Query 004351
Match_columns 759
No_of_seqs 261 out of 1289
Neff 6.2
Searched_HMMs 46136
Date Thu Mar 28 21:57:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004351.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004351hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0446 Vacuolar sorting prote 100.0 2E-59 4.4E-64 544.1 41.0 628 1-748 4-647 (657)
2 smart00053 DYNc Dynamin, GTPas 100.0 4.5E-42 9.8E-47 357.0 25.3 226 1-248 1-229 (240)
3 KOG0447 Dynamin-like GTP bindi 100.0 7.5E-30 1.6E-34 278.9 26.0 287 3-321 283-581 (980)
4 PF00350 Dynamin_N: Dynamin fa 99.9 2.5E-21 5.4E-26 189.4 16.8 167 27-211 1-168 (168)
5 PF01031 Dynamin_M: Dynamin ce 99.8 1.3E-19 2.7E-24 195.1 20.6 264 225-555 2-277 (295)
6 PRK09866 hypothetical protein; 99.4 1.1E-09 2.5E-14 126.2 39.1 45 25-69 70-114 (741)
7 COG0218 Predicted GTPase [Gene 99.4 4.7E-12 1E-16 127.4 13.1 125 23-216 23-150 (200)
8 PF01926 MMR_HSR1: 50S ribosom 98.9 1.1E-08 2.4E-13 94.4 12.4 69 133-210 48-116 (116)
9 PF02421 FeoB_N: Ferrous iron 98.9 4.4E-09 9.6E-14 103.3 8.7 73 132-216 47-120 (156)
10 COG3596 Predicted GTPase [Gene 98.9 3.4E-08 7.4E-13 103.7 14.4 77 131-217 86-164 (296)
11 TIGR03598 GTPase_YsxC ribosome 98.8 3.2E-08 6.8E-13 98.5 13.2 77 133-215 65-143 (179)
12 PRK00454 engB GTP-binding prot 98.8 2.6E-08 5.5E-13 99.7 12.6 78 132-215 70-149 (196)
13 cd01853 Toc34_like Toc34-like 98.8 2.5E-08 5.3E-13 105.4 12.7 131 21-218 28-166 (249)
14 TIGR00991 3a0901s02IAP34 GTP-b 98.8 3.6E-08 7.8E-13 106.5 13.5 138 20-230 34-179 (313)
15 cd01876 YihA_EngB The YihA (En 98.8 2E-08 4.3E-13 96.2 10.0 78 133-216 46-125 (170)
16 TIGR03156 GTP_HflX GTP-binding 98.8 9.5E-08 2.1E-12 105.8 14.9 124 22-214 187-314 (351)
17 cd01887 IF2_eIF5B IF2/eIF5B (i 98.8 5.1E-08 1.1E-12 94.5 11.3 26 25-50 1-26 (168)
18 cd01852 AIG1 AIG1 (avrRpt2-ind 98.8 6E-08 1.3E-12 98.2 11.8 24 26-49 2-25 (196)
19 cd04163 Era Era subfamily. Er 98.7 8.9E-08 1.9E-12 91.3 12.1 74 132-214 51-124 (168)
20 cd04104 p47_IIGP_like p47 (47- 98.7 5.3E-08 1.1E-12 98.9 10.5 26 25-50 2-27 (197)
21 cd01878 HflX HflX subfamily. 98.7 2.3E-07 5.1E-12 93.9 15.2 125 22-215 39-167 (204)
22 PRK00089 era GTPase Era; Revie 98.7 1.4E-07 3E-12 101.3 13.6 74 132-214 53-126 (292)
23 TIGR00436 era GTP-binding prot 98.7 1.6E-07 3.4E-12 100.1 12.8 72 133-214 49-120 (270)
24 cd00880 Era_like Era (E. coli 98.7 2E-07 4.4E-12 87.4 11.5 76 131-216 44-119 (163)
25 COG1160 Predicted GTPases [Gen 98.6 3.2E-07 7E-12 102.4 14.3 122 25-214 4-125 (444)
26 cd01897 NOG NOG1 is a nucleola 98.6 2.5E-07 5.5E-12 89.9 12.0 26 25-50 1-26 (168)
27 PRK11058 GTPase HflX; Provisio 98.6 3.8E-07 8.3E-12 103.4 15.2 124 22-214 195-322 (426)
28 PRK04213 GTP-binding protein; 98.6 2.7E-07 5.9E-12 93.1 12.1 30 21-50 6-35 (201)
29 cd00881 GTP_translation_factor 98.6 2.1E-07 4.7E-12 91.6 10.7 68 131-215 61-128 (189)
30 COG1084 Predicted GTPase [Gene 98.6 3.4E-07 7.4E-12 98.3 12.2 128 20-216 164-295 (346)
31 PF04548 AIG1: AIG1 family; I 98.6 1.5E-07 3.2E-12 96.9 8.9 132 26-229 2-139 (212)
32 PRK03003 GTP-binding protein D 98.6 4.6E-07 1E-11 104.1 13.9 124 22-214 36-159 (472)
33 TIGR03594 GTPase_EngA ribosome 98.5 6.6E-07 1.4E-11 101.2 13.3 74 133-215 48-121 (429)
34 cd01850 CDC_Septin CDC/Septin. 98.5 1.1E-06 2.4E-11 94.3 14.2 26 26-51 6-31 (276)
35 cd01894 EngA1 EngA1 subfamily. 98.5 5.8E-07 1.3E-11 85.6 10.7 75 132-215 45-119 (157)
36 cd04164 trmE TrmE (MnmE, ThdF, 98.5 1.5E-06 3.2E-11 82.7 13.1 73 132-215 49-121 (157)
37 cd01895 EngA2 EngA2 subfamily. 98.5 1.2E-06 2.6E-11 84.5 12.6 78 132-215 50-127 (174)
38 cd04171 SelB SelB subfamily. 98.5 8.6E-07 1.9E-11 85.3 11.4 65 132-214 51-117 (164)
39 cd01898 Obg Obg subfamily. Th 98.5 5.1E-07 1.1E-11 87.8 9.7 24 26-49 2-25 (170)
40 TIGR00993 3a0901s04IAP86 chlor 98.5 1.5E-06 3.2E-11 101.3 14.8 92 132-230 166-267 (763)
41 COG1159 Era GTPase [General fu 98.5 1.1E-06 2.4E-11 93.6 12.5 76 132-217 54-130 (298)
42 PRK00093 GTP-binding protein D 98.5 1.1E-06 2.3E-11 99.8 13.2 125 23-214 172-297 (435)
43 PRK00093 GTP-binding protein D 98.5 1.3E-06 2.8E-11 99.2 13.8 74 132-214 49-122 (435)
44 cd00154 Rab Rab family. Rab G 98.5 1.1E-06 2.3E-11 83.2 11.0 80 132-228 49-132 (159)
45 PRK12298 obgE GTPase CgtA; Rev 98.5 1.1E-06 2.3E-11 98.7 12.0 25 24-48 159-183 (390)
46 TIGR00450 mnmE_trmE_thdF tRNA 98.4 2.1E-06 4.4E-11 98.0 13.8 71 133-214 252-323 (442)
47 cd04165 GTPBP1_like GTPBP1-lik 98.4 1.3E-06 2.9E-11 90.9 10.7 74 126-215 78-152 (224)
48 cd01890 LepA LepA subfamily. 98.4 1.7E-06 3.6E-11 85.2 10.2 66 132-214 67-132 (179)
49 COG0486 ThdF Predicted GTPase 98.4 3E-06 6.5E-11 95.1 13.2 142 3-216 196-339 (454)
50 PRK05291 trmE tRNA modificatio 98.4 3E-06 6.4E-11 96.9 13.3 27 23-49 214-240 (449)
51 cd01879 FeoB Ferrous iron tran 98.4 1.8E-06 3.8E-11 82.7 9.5 71 132-215 43-115 (158)
52 cd04154 Arl2 Arl2 subfamily. 98.4 2.6E-06 5.7E-11 83.9 10.9 29 21-49 11-39 (173)
53 PRK12297 obgE GTPase CgtA; Rev 98.4 2.3E-06 5E-11 96.8 11.6 25 24-48 158-182 (424)
54 cd01868 Rab11_like Rab11-like. 98.3 3.5E-06 7.6E-11 81.7 11.4 67 133-215 53-122 (165)
55 PRK15494 era GTPase Era; Provi 98.3 3.7E-06 7.9E-11 92.8 12.8 25 26-50 54-78 (339)
56 cd04119 RJL RJL (RabJ-Like) su 98.3 2.5E-06 5.5E-11 82.2 10.3 25 26-50 2-26 (168)
57 TIGR03594 GTPase_EngA ribosome 98.3 4E-06 8.8E-11 94.8 13.1 75 133-214 221-296 (429)
58 PRK12299 obgE GTPase CgtA; Rev 98.3 3.6E-06 7.9E-11 92.7 12.2 25 24-48 158-182 (335)
59 PRK09518 bifunctional cytidyla 98.3 3.4E-06 7.3E-11 101.8 13.0 123 23-214 274-396 (712)
60 COG1160 Predicted GTPases [Gen 98.3 9.2E-06 2E-10 91.0 15.3 127 23-216 177-304 (444)
61 PRK03003 GTP-binding protein D 98.3 3.4E-06 7.4E-11 97.0 12.4 76 133-215 260-336 (472)
62 cd04152 Arl4_Arl7 Arl4/Arl7 su 98.3 3.1E-06 6.6E-11 84.6 10.5 66 132-214 52-122 (183)
63 cd01891 TypA_BipA TypA (tyrosi 98.3 3.4E-06 7.4E-11 85.0 10.8 67 131-214 64-130 (194)
64 cd04159 Arl10_like Arl10-like 98.3 3.8E-06 8.2E-11 79.6 10.5 25 26-50 1-25 (159)
65 cd01861 Rab6 Rab6 subfamily. 98.3 4.1E-06 8.9E-11 80.7 10.7 25 26-50 2-26 (161)
66 cd04157 Arl6 Arl6 subfamily. 98.3 3.9E-06 8.5E-11 80.8 10.5 66 132-214 45-117 (162)
67 PF05049 IIGP: Interferon-indu 98.3 2.8E-06 6.1E-11 94.2 10.2 136 4-213 17-153 (376)
68 PRK12296 obgE GTPase CgtA; Rev 98.3 4.4E-06 9.5E-11 96.0 11.9 25 24-48 159-183 (500)
69 TIGR02729 Obg_CgtA Obg family 98.3 4.3E-06 9.3E-11 91.9 11.4 25 24-48 157-181 (329)
70 cd01866 Rab2 Rab2 subfamily. 98.3 5.9E-06 1.3E-10 81.0 11.2 28 24-51 4-31 (168)
71 cd01864 Rab19 Rab19 subfamily. 98.3 6.2E-06 1.3E-10 80.2 11.2 67 133-215 53-122 (165)
72 cd04114 Rab30 Rab30 subfamily. 98.3 5E-06 1.1E-10 80.8 10.5 65 133-214 57-125 (169)
73 smart00175 RAB Rab subfamily o 98.3 5.6E-06 1.2E-10 79.7 10.6 66 133-215 50-119 (164)
74 PF00009 GTP_EFTU: Elongation 98.3 4.7E-06 1E-10 83.7 10.3 81 117-214 54-135 (188)
75 cd01862 Rab7 Rab7 subfamily. 98.3 5.6E-06 1.2E-10 80.5 10.6 25 26-50 2-26 (172)
76 cd01867 Rab8_Rab10_Rab13_like 98.2 8.3E-06 1.8E-10 79.7 11.5 66 133-215 53-122 (167)
77 cd01865 Rab3 Rab3 subfamily. 98.2 9.1E-06 2E-10 79.3 11.8 66 133-215 51-120 (165)
78 cd04122 Rab14 Rab14 subfamily. 98.2 9E-06 2E-10 79.3 11.5 66 133-215 52-121 (166)
79 cd04142 RRP22 RRP22 subfamily. 98.2 9.6E-06 2.1E-10 82.6 11.9 25 26-50 2-26 (198)
80 cd01893 Miro1 Miro1 subfamily. 98.2 5.9E-06 1.3E-10 80.8 9.9 25 26-50 2-26 (166)
81 cd01863 Rab18 Rab18 subfamily. 98.2 6.9E-06 1.5E-10 79.2 10.2 25 26-50 2-26 (161)
82 PRK09518 bifunctional cytidyla 98.2 8.5E-06 1.9E-10 98.3 12.8 125 23-215 449-575 (712)
83 cd04160 Arfrp1 Arfrp1 subfamil 98.2 8.5E-06 1.8E-10 79.1 10.5 68 131-214 49-120 (167)
84 TIGR00491 aIF-2 translation in 98.2 9.3E-06 2E-10 95.5 12.6 133 22-214 2-134 (590)
85 cd01881 Obg_like The Obg-like 98.2 3.4E-06 7.3E-11 82.2 7.6 21 29-49 1-21 (176)
86 cd00878 Arf_Arl Arf (ADP-ribos 98.2 8.3E-06 1.8E-10 78.5 10.2 68 132-215 43-114 (158)
87 cd04101 RabL4 RabL4 (Rab-like4 98.2 6.2E-06 1.3E-10 79.8 9.3 64 133-214 53-120 (164)
88 CHL00189 infB translation init 98.2 7.9E-06 1.7E-10 97.9 11.9 117 23-214 243-360 (742)
89 cd00879 Sar1 Sar1 subfamily. 98.2 1.8E-05 3.9E-10 78.9 12.5 39 8-50 7-45 (190)
90 cd04106 Rab23_lke Rab23-like s 98.2 1.3E-05 2.8E-10 77.2 11.1 66 132-215 51-120 (162)
91 cd04166 CysN_ATPS CysN_ATPS su 98.2 8.3E-06 1.8E-10 83.5 10.0 80 116-214 62-143 (208)
92 cd04113 Rab4 Rab4 subfamily. 98.2 1.6E-05 3.5E-10 76.7 11.5 68 132-215 49-119 (161)
93 smart00178 SAR Sar1p-like memb 98.2 1.4E-05 3E-10 80.1 11.3 29 22-50 15-43 (184)
94 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 98.2 1.7E-05 3.7E-10 77.1 11.6 66 133-215 52-121 (166)
95 TIGR00487 IF-2 translation ini 98.2 1E-05 2.2E-10 95.3 11.7 115 23-214 86-200 (587)
96 cd04145 M_R_Ras_like M-Ras/R-R 98.1 1.5E-05 3.3E-10 76.8 10.7 67 132-215 50-121 (164)
97 cd01860 Rab5_related Rab5-rela 98.1 1.7E-05 3.6E-10 76.6 10.9 26 26-51 3-28 (163)
98 cd04167 Snu114p Snu114p subfam 98.1 1.4E-05 3.1E-10 82.0 10.4 66 132-214 71-136 (213)
99 cd01886 EF-G Elongation factor 98.1 1.4E-05 3.1E-10 85.5 10.7 80 117-214 50-129 (270)
100 cd04168 TetM_like Tet(M)-like 98.1 1E-05 2.2E-10 84.9 9.4 66 132-214 64-129 (237)
101 cd04124 RabL2 RabL2 subfamily. 98.1 1.3E-05 2.7E-10 78.2 9.3 65 133-214 50-117 (161)
102 cd04112 Rab26 Rab26 subfamily. 98.1 2.3E-05 5.1E-10 78.7 11.5 66 133-215 51-120 (191)
103 cd04156 ARLTS1 ARLTS1 subfamil 98.1 2.2E-05 4.8E-10 75.6 10.9 25 26-50 1-25 (160)
104 cd01888 eIF2_gamma eIF2-gamma 98.1 1.9E-05 4.1E-10 80.6 10.7 23 26-48 2-24 (203)
105 cd04138 H_N_K_Ras_like H-Ras/N 98.1 1.9E-05 4.1E-10 75.6 10.0 67 133-215 50-120 (162)
106 cd04155 Arl3 Arl3 subfamily. 98.1 2.6E-05 5.6E-10 76.2 10.9 27 23-49 13-39 (173)
107 cd04136 Rap_like Rap-like subf 98.1 1.8E-05 3.9E-10 76.2 9.6 26 25-50 2-27 (163)
108 TIGR00231 small_GTP small GTP- 98.1 1.9E-05 4.2E-10 73.9 9.4 26 25-50 2-27 (161)
109 cd04115 Rab33B_Rab33A Rab33B/R 98.1 1.5E-05 3.3E-10 78.2 9.0 67 133-214 52-122 (170)
110 cd04175 Rap1 Rap1 subgroup. T 98.1 2.1E-05 4.5E-10 76.3 9.8 67 132-214 49-119 (164)
111 cd04123 Rab21 Rab21 subfamily. 98.1 4.1E-05 8.9E-10 73.3 11.7 25 26-50 2-26 (162)
112 smart00173 RAS Ras subfamily o 98.1 2.7E-05 5.8E-10 75.3 10.5 25 26-50 2-26 (164)
113 cd00882 Ras_like_GTPase Ras-li 98.0 1.7E-05 3.6E-10 73.1 8.6 69 132-216 45-117 (157)
114 cd01884 EF_Tu EF-Tu subfamily. 98.0 2E-05 4.3E-10 80.3 9.8 67 131-214 64-131 (195)
115 cd04162 Arl9_Arfrp2_like Arl9/ 98.0 2.4E-05 5.1E-10 76.8 10.1 67 132-214 44-112 (164)
116 cd04108 Rab36_Rab34 Rab34/Rab3 98.0 2.4E-05 5.2E-10 77.3 9.9 25 26-50 2-26 (170)
117 cd04127 Rab27A Rab27a subfamil 98.0 3.2E-05 7E-10 76.2 10.8 27 25-51 5-31 (180)
118 cd04161 Arl2l1_Arl13_like Arl2 98.0 3.4E-05 7.5E-10 75.8 10.8 66 132-214 43-113 (167)
119 PRK09554 feoB ferrous iron tra 98.0 2.2E-05 4.8E-10 95.2 11.3 74 132-214 50-125 (772)
120 PRK05306 infB translation init 98.0 2E-05 4.3E-10 95.4 10.8 66 132-214 337-402 (787)
121 cd04139 RalA_RalB RalA/RalB su 98.0 3E-05 6.5E-10 74.5 10.1 67 133-215 49-119 (164)
122 cd04151 Arl1 Arl1 subfamily. 98.0 3.3E-05 7.1E-10 74.7 10.4 66 132-214 43-113 (158)
123 cd01889 SelB_euk SelB subfamil 98.0 2.4E-05 5.2E-10 78.7 9.8 22 26-47 2-23 (192)
124 cd04169 RF3 RF3 subfamily. Pe 98.0 5.3E-05 1.1E-09 81.0 12.7 72 125-214 65-136 (267)
125 cd04110 Rab35 Rab35 subfamily. 98.0 4.1E-05 8.9E-10 77.6 11.2 27 24-50 6-32 (199)
126 cd04170 EF-G_bact Elongation f 98.0 2E-05 4.3E-10 83.9 9.3 66 132-214 64-129 (268)
127 TIGR02528 EutP ethanolamine ut 98.0 3.1E-05 6.7E-10 73.4 9.7 24 26-49 2-25 (142)
128 PRK04004 translation initiatio 98.0 3.3E-05 7.2E-10 91.1 12.0 30 21-50 3-32 (586)
129 PF00735 Septin: Septin; Inte 98.0 3.9E-05 8.5E-10 82.6 11.5 82 132-216 63-157 (281)
130 cd04125 RabA_like RabA-like su 98.0 4.6E-05 1E-09 76.1 11.3 65 133-214 50-118 (188)
131 cd00876 Ras Ras family. The R 98.0 4.8E-05 1E-09 72.6 11.0 25 26-50 1-25 (160)
132 cd04141 Rit_Rin_Ric Rit/Rin/Ri 98.0 3.4E-05 7.4E-10 76.4 10.0 66 133-214 51-120 (172)
133 cd04111 Rab39 Rab39 subfamily. 98.0 4.3E-05 9.4E-10 78.5 11.1 27 25-51 3-29 (211)
134 cd04116 Rab9 Rab9 subfamily. 98.0 3.8E-05 8.3E-10 74.9 10.1 27 25-51 6-32 (170)
135 PLN03127 Elongation factor Tu; 98.0 2.2E-05 4.7E-10 89.8 9.6 82 116-215 109-191 (447)
136 PLN03108 Rab family protein; P 98.0 5.7E-05 1.2E-09 77.4 11.7 27 25-51 7-33 (210)
137 PF10662 PduV-EutP: Ethanolami 98.0 2.8E-05 6E-10 75.4 8.8 25 26-50 3-27 (143)
138 cd04107 Rab32_Rab38 Rab38/Rab3 98.0 3.6E-05 7.7E-10 78.0 10.1 25 26-50 2-26 (201)
139 KOG0448 Mitofusin 1 GTPase, in 98.0 0.00084 1.8E-08 78.3 22.0 176 8-216 95-276 (749)
140 cd04109 Rab28 Rab28 subfamily. 98.0 4.2E-05 9.1E-10 78.6 10.3 25 26-50 2-26 (215)
141 TIGR00475 selB selenocysteine- 98.0 3.1E-05 6.8E-10 91.3 10.5 65 132-215 50-117 (581)
142 cd04118 Rab24 Rab24 subfamily. 97.9 4.1E-05 8.9E-10 76.6 9.8 25 26-50 2-26 (193)
143 cd04140 ARHI_like ARHI subfami 97.9 3.9E-05 8.4E-10 74.8 9.4 25 26-50 3-27 (165)
144 cd04147 Ras_dva Ras-dva subfam 97.9 3.7E-05 7.9E-10 77.8 9.1 25 26-50 1-25 (198)
145 cd04153 Arl5_Arl8 Arl5/Arl8 su 97.9 6.2E-05 1.4E-09 74.4 10.4 27 24-50 15-41 (174)
146 KOG1191 Mitochondrial GTPase [ 97.9 4.6E-05 9.9E-10 85.8 10.2 124 25-216 269-404 (531)
147 KOG2486 Predicted GTPase [Gene 97.9 2.5E-05 5.5E-10 82.4 7.6 77 132-214 183-261 (320)
148 cd04176 Rap2 Rap2 subgroup. T 97.9 4.1E-05 9E-10 74.0 8.6 25 26-50 3-27 (163)
149 cd04158 ARD1 ARD1 subfamily. 97.9 5.3E-05 1.2E-09 74.4 9.3 67 132-214 43-113 (169)
150 cd01883 EF1_alpha Eukaryotic e 97.9 3.9E-05 8.5E-10 79.3 8.5 82 116-214 62-150 (219)
151 cd01885 EF2 EF2 (for archaea a 97.9 4.6E-05 1E-09 79.3 8.9 66 132-214 73-138 (222)
152 PLN03118 Rab family protein; P 97.9 6.5E-05 1.4E-09 76.8 9.9 26 25-50 15-40 (211)
153 cd04177 RSR1 RSR1 subgroup. R 97.9 8.5E-05 1.8E-09 72.6 10.2 67 133-215 50-120 (168)
154 cd01896 DRG The developmentall 97.9 0.00011 2.3E-09 77.0 11.5 24 26-49 2-25 (233)
155 CHL00071 tufA elongation facto 97.9 7.1E-05 1.5E-09 84.7 10.8 67 132-215 75-142 (409)
156 cd04149 Arf6 Arf6 subfamily. 97.9 0.00014 3.1E-09 71.6 11.7 79 133-229 54-136 (168)
157 cd04120 Rab12 Rab12 subfamily. 97.8 5.4E-05 1.2E-09 77.6 8.9 67 132-214 49-118 (202)
158 PLN03110 Rab GTPase; Provision 97.8 0.0001 2.2E-09 76.0 10.9 66 133-214 62-130 (216)
159 cd04137 RheB Rheb (Ras Homolog 97.8 0.00013 2.7E-09 72.1 10.9 25 26-50 3-27 (180)
160 smart00174 RHO Rho (Ras homolo 97.8 3.5E-05 7.7E-10 75.3 6.9 24 27-50 1-24 (174)
161 COG1100 GTPase SAR1 and relate 97.8 0.00012 2.6E-09 74.5 11.0 67 133-215 55-125 (219)
162 cd00157 Rho Rho (Ras homology) 97.8 5.5E-05 1.2E-09 73.4 8.1 25 26-50 2-26 (171)
163 cd04144 Ras2 Ras2 subfamily. 97.8 7.3E-05 1.6E-09 75.1 9.2 66 133-214 48-119 (190)
164 PLN00223 ADP-ribosylation fact 97.8 0.00029 6.2E-09 70.6 13.4 66 132-214 61-131 (181)
165 COG2262 HflX GTPases [General 97.8 0.00034 7.4E-09 77.7 14.9 140 7-216 175-319 (411)
166 cd04105 SR_beta Signal recogni 97.8 0.00016 3.4E-09 74.0 11.6 26 25-50 1-26 (203)
167 PLN03071 GTP-binding nuclear p 97.8 7.1E-05 1.5E-09 77.4 9.0 66 132-214 62-130 (219)
168 cd04132 Rho4_like Rho4-like su 97.8 0.00011 2.3E-09 73.1 9.9 25 26-50 2-26 (187)
169 PRK10512 selenocysteinyl-tRNA- 97.8 0.0001 2.3E-09 87.4 11.3 56 658-719 521-579 (614)
170 cd04146 RERG_RasL11_like RERG/ 97.8 7.3E-05 1.6E-09 72.7 8.4 25 26-50 1-25 (165)
171 PRK15467 ethanolamine utilizat 97.8 0.00012 2.7E-09 71.7 9.9 23 26-48 3-25 (158)
172 KOG1423 Ras-like GTPase ERA [C 97.8 0.00011 2.4E-09 78.6 10.0 125 26-216 74-200 (379)
173 PRK00049 elongation factor Tu; 97.8 0.00011 2.4E-09 82.8 10.9 80 117-214 61-141 (396)
174 cd04117 Rab15 Rab15 subfamily. 97.8 0.00014 3.1E-09 70.8 10.1 67 133-215 50-119 (161)
175 PTZ00369 Ras-like protein; Pro 97.8 9.1E-05 2E-09 74.3 9.0 27 24-50 5-31 (189)
176 cd04150 Arf1_5_like Arf1-Arf5- 97.7 0.00022 4.8E-09 69.5 10.7 67 132-214 44-114 (159)
177 cd04134 Rho3 Rho3 subfamily. 97.7 6.3E-05 1.4E-09 75.6 6.9 66 132-214 48-117 (189)
178 PTZ00133 ADP-ribosylation fact 97.7 0.00026 5.6E-09 70.9 11.3 66 132-214 61-131 (182)
179 PF08477 Miro: Miro-like prote 97.7 3.8E-05 8.2E-10 70.5 4.8 25 26-50 1-25 (119)
180 smart00177 ARF ARF-like small 97.7 0.00025 5.4E-09 70.3 10.8 67 132-214 57-127 (175)
181 TIGR01394 TypA_BipA GTP-bindin 97.7 0.00013 2.9E-09 86.2 10.3 72 125-214 58-129 (594)
182 PRK10218 GTP-binding protein; 97.7 0.0002 4.4E-09 84.7 11.7 66 132-214 68-133 (607)
183 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 97.7 0.00019 4.1E-09 74.7 10.2 66 132-214 49-118 (222)
184 KOG1954 Endocytosis/signaling 97.7 0.00012 2.5E-09 79.9 8.4 169 21-217 55-227 (532)
185 TIGR00485 EF-Tu translation el 97.7 0.00017 3.7E-09 81.2 10.2 82 116-215 60-142 (394)
186 PRK12739 elongation factor G; 97.7 0.00016 3.5E-09 87.2 10.5 82 116-215 58-139 (691)
187 cd04143 Rhes_like Rhes_like su 97.7 0.00021 4.6E-09 75.5 10.2 25 26-50 2-26 (247)
188 cd01870 RhoA_like RhoA-like su 97.7 0.00014 3E-09 71.2 8.2 26 25-50 2-27 (175)
189 TIGR00484 EF-G translation elo 97.7 0.00012 2.7E-09 88.1 9.4 81 117-215 61-141 (689)
190 cd00877 Ran Ran (Ras-related n 97.7 0.0001 2.2E-09 72.4 7.1 25 26-50 2-26 (166)
191 PRK12736 elongation factor Tu; 97.7 0.00024 5.3E-09 80.0 11.0 81 116-214 60-141 (394)
192 cd04121 Rab40 Rab40 subfamily. 97.7 0.00025 5.3E-09 71.9 10.0 66 132-214 55-123 (189)
193 TIGR02034 CysN sulfate adenyly 97.6 0.00018 4E-09 81.3 9.9 80 116-214 65-146 (406)
194 cd04135 Tc10 TC10 subfamily. 97.6 0.00012 2.6E-09 71.6 7.3 25 26-50 2-26 (174)
195 TIGR01393 lepA GTP-binding pro 97.6 0.00023 5.1E-09 84.2 10.9 66 132-214 70-135 (595)
196 PRK12735 elongation factor Tu; 97.6 0.00026 5.7E-09 79.8 10.6 66 132-214 75-141 (396)
197 cd04131 Rnd Rnd subfamily. Th 97.6 0.00018 3.8E-09 72.0 8.2 112 26-214 3-118 (178)
198 TIGR00437 feoB ferrous iron tr 97.6 0.00021 4.5E-09 84.6 9.9 70 133-214 42-112 (591)
199 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 97.6 0.00034 7.3E-09 73.4 10.2 65 133-214 62-130 (232)
200 PF00071 Ras: Ras family; Int 97.6 0.00043 9.4E-09 66.7 10.2 67 133-215 49-118 (162)
201 PLN03126 Elongation factor Tu; 97.6 0.00048 1E-08 79.5 12.2 81 117-215 130-211 (478)
202 cd01874 Cdc42 Cdc42 subfamily. 97.6 0.00029 6.4E-09 70.0 8.9 65 133-214 50-118 (175)
203 cd04128 Spg1 Spg1p. Spg1p (se 97.6 0.00036 7.7E-09 70.0 9.4 66 132-214 49-117 (182)
204 PRK05124 cysN sulfate adenylyl 97.5 0.00025 5.3E-09 81.9 9.2 28 21-48 24-51 (474)
205 cd01900 YchF YchF subfamily. 97.5 0.00027 5.8E-09 75.9 8.8 37 27-63 1-37 (274)
206 PRK00741 prfC peptide chain re 97.5 0.00035 7.6E-09 81.6 10.4 73 124-214 72-144 (526)
207 cd04148 RGK RGK subfamily. Th 97.5 0.00032 6.9E-09 72.7 9.1 25 26-50 2-26 (221)
208 PF05879 RHD3: Root hair defec 97.5 0.045 9.8E-07 66.7 28.5 87 650-742 421-527 (742)
209 cd04126 Rab20 Rab20 subfamily. 97.5 0.00047 1E-08 71.7 10.2 25 26-50 2-26 (220)
210 PRK05506 bifunctional sulfate 97.5 0.00024 5.2E-09 84.8 9.1 24 25-48 25-48 (632)
211 PRK12317 elongation factor 1-a 97.5 0.00021 4.4E-09 81.3 8.1 79 116-214 69-152 (425)
212 cd01871 Rac1_like Rac1-like su 97.5 0.00038 8.2E-09 69.1 9.0 65 133-214 50-118 (174)
213 TIGR03680 eif2g_arch translati 97.5 0.00032 6.9E-09 79.4 9.4 23 26-48 6-28 (406)
214 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 97.5 0.00045 9.8E-09 69.5 9.4 66 132-214 53-122 (182)
215 cd01892 Miro2 Miro2 subfamily. 97.5 0.00042 9.1E-09 68.3 8.9 26 25-50 5-30 (169)
216 cd01855 YqeH YqeH. YqeH is an 97.5 0.00018 3.9E-09 72.4 6.4 26 25-50 128-153 (190)
217 COG0370 FeoB Fe2+ transport sy 97.5 0.00063 1.4E-08 79.8 11.4 119 25-216 4-123 (653)
218 PRK00007 elongation factor G; 97.5 0.00034 7.4E-09 84.4 9.7 82 116-215 60-141 (693)
219 PRK05433 GTP-binding protein L 97.5 0.00064 1.4E-08 80.6 11.7 66 132-214 74-139 (600)
220 cd04130 Wrch_1 Wrch-1 subfamil 97.5 0.00028 6.1E-09 69.4 7.2 25 26-50 2-26 (173)
221 COG2229 Predicted GTPase [Gene 97.5 0.0019 4.2E-08 64.7 12.9 141 21-230 7-148 (187)
222 cd01875 RhoG RhoG subfamily. 97.4 0.00063 1.4E-08 68.6 9.3 66 132-214 51-120 (191)
223 PTZ00258 GTP-binding protein; 97.4 0.00048 1E-08 77.3 9.2 46 19-64 16-61 (390)
224 TIGR00483 EF-1_alpha translati 97.4 0.00062 1.3E-08 77.5 9.4 80 116-214 70-154 (426)
225 cd01899 Ygr210 Ygr210 subfamil 97.4 0.00051 1.1E-08 75.3 8.3 37 27-63 1-37 (318)
226 cd01857 HSR1_MMR1 HSR1/MMR1. 97.4 0.00037 8.1E-09 66.9 6.4 25 26-50 85-109 (141)
227 PRK09602 translation-associate 97.4 0.00042 9.1E-09 78.2 7.8 39 25-63 2-40 (396)
228 KOG2655 Septin family protein 97.3 0.0009 1.9E-08 73.9 10.0 83 132-217 79-174 (366)
229 PRK13351 elongation factor G; 97.3 0.0011 2.3E-08 80.1 11.1 68 131-215 72-139 (687)
230 TIGR00490 aEF-2 translation el 97.3 0.00093 2E-08 81.0 10.6 67 132-215 86-152 (720)
231 TIGR00503 prfC peptide chain r 97.3 0.00096 2.1E-08 78.0 10.3 74 123-214 72-145 (527)
232 smart00176 RAN Ran (Ras-relate 97.3 0.00061 1.3E-08 69.7 7.6 66 132-214 44-112 (200)
233 PRK04000 translation initiatio 97.3 0.00091 2E-08 75.9 9.5 22 26-47 11-32 (411)
234 PRK09601 GTP-binding protein Y 97.3 0.001 2.2E-08 74.0 9.6 38 25-62 3-40 (364)
235 COG5019 CDC3 Septin family pro 97.2 0.0017 3.6E-08 71.4 10.6 82 132-216 82-177 (373)
236 PLN00116 translation elongatio 97.2 0.002 4.4E-08 79.3 12.1 66 133-215 99-164 (843)
237 cd04102 RabL3 RabL3 (Rab-like3 97.2 0.0032 6.9E-08 64.7 11.3 25 26-50 2-26 (202)
238 cd04133 Rop_like Rop subfamily 97.2 0.0013 2.8E-08 65.9 8.2 66 132-214 49-118 (176)
239 cd04129 Rho2 Rho2 subfamily. 97.1 0.0014 3E-08 65.6 7.7 25 26-50 3-27 (187)
240 PTZ00327 eukaryotic translatio 97.1 0.0019 4E-08 74.3 9.5 23 26-48 36-58 (460)
241 PRK07560 elongation factor EF- 97.1 0.003 6.5E-08 76.8 11.8 66 132-214 87-152 (731)
242 PTZ00141 elongation factor 1- 97.1 0.0013 2.7E-08 75.5 7.9 80 117-213 71-157 (446)
243 TIGR01425 SRP54_euk signal rec 97.0 0.0093 2E-07 67.9 14.0 71 132-215 183-253 (429)
244 PRK13768 GTPase; Provisional 97.0 0.0033 7.2E-08 66.7 9.8 76 132-216 97-177 (253)
245 PTZ00416 elongation factor 2; 97.0 0.0038 8.3E-08 76.9 11.3 65 133-214 93-157 (836)
246 PLN00043 elongation factor 1-a 96.9 0.002 4.3E-08 73.9 7.2 67 132-214 85-158 (447)
247 KOG1489 Predicted GTP-binding 96.8 0.0041 8.8E-08 67.2 8.5 25 24-48 196-220 (366)
248 PF00025 Arf: ADP-ribosylation 96.8 0.0048 1E-07 61.5 8.4 79 132-229 58-141 (175)
249 cd01882 BMS1 Bms1. Bms1 is an 96.8 0.006 1.3E-07 63.6 9.2 26 22-47 36-62 (225)
250 TIGR02836 spore_IV_A stage IV 96.7 0.0072 1.6E-07 67.9 9.4 165 9-214 5-193 (492)
251 PLN00023 GTP-binding protein; 96.6 0.0071 1.5E-07 66.4 9.1 30 21-50 18-47 (334)
252 PRK09435 membrane ATPase/prote 96.6 0.011 2.4E-07 65.2 10.7 23 25-47 57-79 (332)
253 PRK12740 elongation factor G; 96.6 0.012 2.6E-07 70.9 11.1 67 132-215 60-126 (668)
254 KOG1490 GTP-binding protein CR 96.5 0.0055 1.2E-07 69.6 7.5 79 131-217 214-297 (620)
255 PF09439 SRPRB: Signal recogni 96.5 0.0044 9.6E-08 62.6 6.1 27 24-50 3-29 (181)
256 PRK10416 signal recognition pa 96.5 0.006 1.3E-07 67.0 7.2 23 26-48 116-138 (318)
257 COG1163 DRG Predicted GTPase [ 96.4 0.0066 1.4E-07 65.9 6.5 26 25-50 64-89 (365)
258 PRK14974 cell division protein 96.3 0.013 2.7E-07 64.9 8.6 71 132-215 223-293 (336)
259 PRK11889 flhF flagellar biosyn 96.3 0.0066 1.4E-07 68.2 6.1 71 132-215 321-391 (436)
260 PTZ00132 GTP-binding nuclear p 96.3 0.038 8.2E-07 56.5 11.3 31 20-50 5-35 (215)
261 cd01858 NGP_1 NGP-1. Autoanti 96.2 0.0092 2E-07 58.2 6.2 28 26-53 104-131 (157)
262 PRK06731 flhF flagellar biosyn 96.2 0.025 5.3E-07 60.8 9.9 71 132-215 155-225 (270)
263 TIGR00064 ftsY signal recognit 96.2 0.087 1.9E-06 56.7 14.0 73 132-215 155-231 (272)
264 TIGR03597 GTPase_YqeH ribosome 96.2 0.0074 1.6E-07 67.4 6.1 24 25-48 155-178 (360)
265 cd01873 RhoBTB RhoBTB subfamil 96.1 0.02 4.3E-07 58.3 8.3 64 132-214 66-133 (195)
266 KOG0094 GTPase Rab6/YPT6/Ryh1, 96.1 0.033 7.2E-07 56.6 9.5 58 159-216 82-143 (221)
267 KOG1547 Septin CDC10 and relat 96.1 0.03 6.4E-07 58.5 9.3 25 26-50 48-72 (336)
268 PRK00771 signal recognition pa 96.1 0.011 2.4E-07 67.6 6.9 70 133-215 177-246 (437)
269 cd01851 GBP Guanylate-binding 96.0 0.0047 1E-07 64.4 3.3 28 23-50 6-35 (224)
270 PRK12726 flagellar biosynthesi 96.0 0.037 8E-07 62.1 10.3 70 132-214 286-355 (407)
271 PRK13796 GTPase YqeH; Provisio 96.0 0.013 2.9E-07 65.4 7.0 23 26-48 162-184 (365)
272 COG1161 Predicted GTPases [Gen 96.0 0.017 3.6E-07 63.6 7.6 24 26-49 134-157 (322)
273 PF00448 SRP54: SRP54-type pro 96.0 0.044 9.5E-07 56.1 9.9 22 27-48 4-25 (196)
274 PRK14723 flhF flagellar biosyn 95.9 0.034 7.5E-07 67.3 10.4 24 26-49 187-210 (767)
275 cd01849 YlqF_related_GTPase Yl 95.9 0.0098 2.1E-07 57.9 4.7 45 22-66 98-143 (155)
276 PRK10867 signal recognition pa 95.8 0.052 1.1E-06 62.1 10.7 70 132-214 184-253 (433)
277 cd04178 Nucleostemin_like Nucl 95.7 0.02 4.4E-07 57.3 6.3 28 25-52 118-145 (172)
278 cd03114 ArgK-like The function 95.7 0.08 1.7E-06 51.7 10.2 22 27-48 2-23 (148)
279 PRK14722 flhF flagellar biosyn 95.6 0.021 4.5E-07 64.1 6.6 24 26-49 139-162 (374)
280 PRK05703 flhF flagellar biosyn 95.6 0.027 5.8E-07 64.4 7.3 71 132-214 300-370 (424)
281 TIGR00750 lao LAO/AO transport 95.6 0.079 1.7E-06 57.7 10.6 25 23-47 33-57 (300)
282 KOG0446 Vacuolar sorting prote 95.5 0.22 4.7E-06 59.9 14.8 90 649-742 566-655 (657)
283 COG4917 EutP Ethanolamine util 95.5 0.041 9E-07 52.3 6.8 27 26-52 3-29 (148)
284 COG5256 TEF1 Translation elong 95.5 0.14 3E-06 57.6 12.0 81 116-215 70-159 (428)
285 PF03029 ATP_bind_1: Conserved 95.3 0.018 4E-07 60.6 4.5 37 29-71 1-37 (238)
286 KOG1532 GTPase XAB1, interacts 95.3 0.089 1.9E-06 56.1 9.3 28 23-50 18-45 (366)
287 TIGR00959 ffh signal recogniti 95.3 0.05 1.1E-06 62.1 8.2 70 132-214 183-252 (428)
288 PRK12724 flagellar biosynthesi 95.2 0.06 1.3E-06 61.2 8.4 72 132-214 300-372 (432)
289 cd03115 SRP The signal recogni 95.1 0.14 3.1E-06 50.5 9.9 72 132-216 83-154 (173)
290 PRK14721 flhF flagellar biosyn 95.1 0.05 1.1E-06 61.9 7.3 71 132-215 270-340 (420)
291 PRK12727 flagellar biosynthesi 94.8 0.089 1.9E-06 61.4 8.5 22 26-47 352-373 (559)
292 KOG0078 GTP-binding protein SE 94.8 0.21 4.6E-06 51.3 10.2 67 133-215 62-131 (207)
293 KOG0395 Ras-related GTPase [Ge 94.8 0.087 1.9E-06 53.9 7.5 116 24-215 3-122 (196)
294 COG0536 Obg Predicted GTPase [ 94.6 0.12 2.7E-06 56.7 8.5 22 27-48 162-183 (369)
295 COG3840 ThiQ ABC-type thiamine 94.6 0.024 5.2E-07 57.3 2.7 28 26-53 27-54 (231)
296 cd01856 YlqF YlqF. Proteins o 94.5 0.043 9.2E-07 54.4 4.5 29 24-52 115-143 (171)
297 KOG0084 GTPase Rab1/YPT1, smal 94.5 0.19 4E-06 51.3 9.0 130 24-228 9-141 (205)
298 TIGR00092 GTP-binding protein 94.5 0.17 3.7E-06 56.6 9.5 24 26-49 4-27 (368)
299 PRK14845 translation initiatio 94.4 0.15 3.4E-06 63.9 10.0 67 131-214 525-591 (1049)
300 PRK12723 flagellar biosynthesi 94.4 0.35 7.7E-06 54.6 11.9 71 132-214 255-325 (388)
301 PF03193 DUF258: Protein of un 94.4 0.03 6.5E-07 55.6 3.0 24 25-48 36-59 (161)
302 TIGR03596 GTPase_YlqF ribosome 94.3 0.083 1.8E-06 56.7 6.4 29 24-52 118-146 (276)
303 COG0532 InfB Translation initi 94.2 0.21 4.6E-06 57.7 9.5 35 22-56 3-37 (509)
304 KOG1145 Mitochondrial translat 93.9 0.33 7.2E-06 56.2 10.2 72 125-213 194-265 (683)
305 TIGR03348 VI_IcmF type VI secr 93.7 0.31 6.7E-06 62.6 10.9 46 4-50 90-136 (1169)
306 PRK06995 flhF flagellar biosyn 93.7 0.25 5.5E-06 57.2 9.2 25 26-50 258-282 (484)
307 PRK09563 rbgA GTPase YlqF; Rev 93.6 0.072 1.6E-06 57.6 4.4 29 24-52 121-149 (287)
308 PF13555 AAA_29: P-loop contai 93.6 0.06 1.3E-06 45.0 2.8 23 26-48 25-47 (62)
309 PF00005 ABC_tran: ABC transpo 93.4 0.058 1.3E-06 50.8 2.9 25 26-50 13-37 (137)
310 PRK12289 GTPase RsgA; Reviewed 93.2 0.08 1.7E-06 59.0 3.9 27 26-52 174-200 (352)
311 KOG2203 GTP-binding protein [G 93.0 0.058 1.3E-06 62.0 2.5 31 20-50 33-63 (772)
312 COG1101 PhnK ABC-type uncharac 92.6 0.08 1.7E-06 54.9 2.7 32 20-51 25-59 (263)
313 KOG0458 Elongation factor 1 al 92.6 0.32 7E-06 56.6 7.7 81 115-214 239-328 (603)
314 TIGR03263 guanyl_kin guanylate 92.5 0.1 2.3E-06 51.6 3.4 21 27-47 4-24 (180)
315 PRK12288 GTPase RsgA; Reviewed 92.5 0.082 1.8E-06 58.8 2.9 25 26-50 207-231 (347)
316 cd01854 YjeQ_engC YjeQ/EngC. 92.5 0.11 2.5E-06 56.1 3.8 29 25-53 162-190 (287)
317 cd00071 GMPK Guanosine monopho 92.5 0.11 2.3E-06 50.1 3.2 21 27-47 2-22 (137)
318 KOG0091 GTPase Rab39, small G 92.5 1.3 2.8E-05 44.2 10.5 116 26-215 10-130 (213)
319 KOG0075 GTP-binding ADP-ribosy 92.5 0.49 1.1E-05 46.3 7.6 64 133-213 66-134 (186)
320 COG0480 FusA Translation elong 92.3 0.43 9.4E-06 57.7 8.7 83 117-218 63-145 (697)
321 TIGR00157 ribosome small subun 92.3 0.13 2.8E-06 54.4 3.8 28 25-52 121-148 (245)
322 cd04103 Centaurin_gamma Centau 92.3 0.1 2.2E-06 50.9 2.9 25 26-50 2-26 (158)
323 KOG0092 GTPase Rab5/YPT51 and 92.1 0.35 7.7E-06 49.1 6.5 26 26-51 7-32 (200)
324 KOG0093 GTPase Rab3, small G p 92.1 0.64 1.4E-05 45.5 7.9 65 133-213 71-138 (193)
325 KOG1707 Predicted Ras related/ 92.0 0.2 4.4E-06 58.3 5.2 27 25-51 10-36 (625)
326 KOG0090 Signal recognition par 92.0 0.78 1.7E-05 47.6 8.8 23 25-47 39-61 (238)
327 PRK00098 GTPase RsgA; Reviewed 91.9 0.15 3.3E-06 55.4 4.1 25 26-50 166-190 (298)
328 PRK11174 cysteine/glutathione 91.9 2 4.4E-05 50.9 13.8 25 26-51 378-402 (588)
329 KOG1144 Translation initiation 91.9 1.2 2.7E-05 53.2 11.4 134 20-215 471-606 (1064)
330 COG1136 SalX ABC-type antimicr 91.8 0.12 2.6E-06 54.1 2.9 25 26-50 33-57 (226)
331 TIGR02868 CydC thiol reductant 91.6 0.89 1.9E-05 53.1 10.2 25 26-50 363-387 (529)
332 COG1116 TauB ABC-type nitrate/ 91.4 0.14 3E-06 54.1 2.9 26 27-52 32-57 (248)
333 PF03205 MobB: Molybdopterin g 91.3 0.16 3.5E-06 49.2 3.0 24 25-48 1-24 (140)
334 TIGR01166 cbiO cobalt transpor 91.2 0.15 3.2E-06 51.3 2.8 25 26-50 20-44 (190)
335 TIGR02673 FtsE cell division A 91.2 0.15 3.2E-06 52.1 2.8 25 26-50 30-54 (214)
336 KOG0410 Predicted GTP binding 91.2 0.18 3.9E-06 55.1 3.4 39 20-58 174-212 (410)
337 cd03224 ABC_TM1139_LivF_branch 91.2 0.15 3.2E-06 52.4 2.8 25 26-50 28-52 (222)
338 cd03216 ABC_Carb_Monos_I This 91.1 0.16 3.5E-06 50.0 2.9 25 26-50 28-52 (163)
339 COG3910 Predicted ATPase [Gene 91.1 0.17 3.7E-06 51.5 3.1 33 21-53 34-67 (233)
340 PF13191 AAA_16: AAA ATPase do 91.1 0.26 5.7E-06 48.4 4.4 41 7-48 8-48 (185)
341 cd03369 ABCC_NFT1 Domain 2 of 91.1 0.17 3.7E-06 51.6 3.1 31 26-58 36-66 (207)
342 TIGR01360 aden_kin_iso1 adenyl 91.0 0.17 3.7E-06 50.2 3.0 28 23-50 2-32 (188)
343 cd03215 ABC_Carb_Monos_II This 91.0 0.18 3.9E-06 50.5 3.2 25 26-50 28-52 (182)
344 COG3276 SelB Selenocysteine-sp 91.0 0.97 2.1E-05 51.3 9.1 65 133-216 51-118 (447)
345 cd03273 ABC_SMC2_euk Eukaryoti 91.0 0.16 3.5E-06 53.5 2.9 27 21-47 22-48 (251)
346 PRK13541 cytochrome c biogenes 91.0 0.16 3.4E-06 51.4 2.7 25 26-50 28-52 (195)
347 COG4559 ABC-type hemin transpo 90.9 0.18 3.8E-06 52.3 3.0 31 26-58 29-59 (259)
348 PRK15177 Vi polysaccharide exp 90.9 0.18 3.8E-06 52.0 3.1 29 27-57 16-44 (213)
349 PRK00300 gmk guanylate kinase; 90.9 0.18 3.9E-06 51.1 3.0 22 26-47 7-28 (205)
350 TIGR00960 3a0501s02 Type II (G 90.9 0.16 3.5E-06 52.0 2.7 25 26-50 31-55 (216)
351 cd03263 ABC_subfamily_A The AB 90.9 0.16 3.6E-06 52.0 2.8 25 26-50 30-54 (220)
352 TIGR03608 L_ocin_972_ABC putat 90.8 0.17 3.6E-06 51.4 2.7 25 26-50 26-50 (206)
353 KOG3883 Ras family small GTPas 90.8 2.5 5.3E-05 41.8 10.4 69 132-216 60-133 (198)
354 cd03269 ABC_putative_ATPase Th 90.8 0.18 3.8E-06 51.5 2.9 29 22-50 23-52 (210)
355 KOG0095 GTPase Rab30, small G 90.7 1.5 3.2E-05 43.0 8.8 116 24-214 7-125 (213)
356 cd03266 ABC_NatA_sodium_export 90.7 0.17 3.8E-06 51.8 2.8 24 27-50 34-57 (218)
357 cd03225 ABC_cobalt_CbiO_domain 90.7 0.18 3.9E-06 51.4 2.9 25 26-50 29-53 (211)
358 cd03226 ABC_cobalt_CbiO_domain 90.7 0.18 3.9E-06 51.3 2.9 25 26-50 28-52 (205)
359 cd03221 ABCF_EF-3 ABCF_EF-3 E 90.7 0.19 4E-06 48.6 2.8 24 27-50 29-52 (144)
360 cd03222 ABC_RNaseL_inhibitor T 90.7 0.17 3.6E-06 51.0 2.6 25 26-50 27-51 (177)
361 cd03293 ABC_NrtD_SsuB_transpor 90.7 0.18 3.9E-06 51.8 2.9 25 26-50 32-56 (220)
362 cd01859 MJ1464 MJ1464. This f 90.6 0.47 1E-05 45.9 5.6 25 24-48 101-125 (156)
363 cd03255 ABC_MJ0796_Lo1CDE_FtsE 90.6 0.18 3.9E-06 51.6 2.8 25 26-50 32-56 (218)
364 PF13521 AAA_28: AAA domain; P 90.6 0.16 3.5E-06 49.7 2.3 22 26-47 1-22 (163)
365 cd03218 ABC_YhbG The ABC trans 90.5 0.18 4E-06 52.1 2.8 25 26-50 28-52 (232)
366 KOG2485 Conserved ATP/GTP bind 90.5 0.65 1.4E-05 50.6 6.9 30 21-50 140-169 (335)
367 cd03261 ABC_Org_Solvent_Resist 90.5 0.19 4.1E-06 52.2 2.9 25 26-50 28-52 (235)
368 PRK13540 cytochrome c biogenes 90.5 0.19 4.2E-06 50.9 2.9 25 26-50 29-53 (200)
369 cd03256 ABC_PhnC_transporter A 90.4 0.19 4.1E-06 52.3 2.8 25 26-50 29-53 (241)
370 TIGR02315 ABC_phnC phosphonate 90.4 0.18 4E-06 52.5 2.7 25 26-50 30-54 (243)
371 cd03249 ABC_MTABC3_MDL1_MDL2 M 90.4 0.22 4.8E-06 51.8 3.3 30 26-57 31-60 (238)
372 TIGR02211 LolD_lipo_ex lipopro 90.4 0.2 4.3E-06 51.5 2.8 25 26-50 33-57 (221)
373 cd03278 ABC_SMC_barmotin Barmo 90.3 0.13 2.9E-06 52.4 1.6 27 22-48 20-46 (197)
374 cd03290 ABCC_SUR1_N The SUR do 90.3 0.2 4.3E-06 51.5 2.8 25 26-50 29-53 (218)
375 cd03259 ABC_Carb_Solutes_like 90.3 0.21 4.4E-06 51.1 2.9 25 26-50 28-52 (213)
376 PRK14738 gmk guanylate kinase; 90.3 0.3 6.5E-06 50.2 4.1 22 26-47 15-36 (206)
377 PRK11629 lolD lipoprotein tran 90.3 0.2 4.4E-06 52.0 2.9 25 26-50 37-61 (233)
378 cd03232 ABC_PDR_domain2 The pl 90.3 0.22 4.8E-06 50.3 3.1 23 26-48 35-57 (192)
379 cd00267 ABC_ATPase ABC (ATP-bi 90.2 0.23 5.1E-06 48.2 3.1 25 26-50 27-51 (157)
380 PRK11124 artP arginine transpo 90.2 0.21 4.5E-06 52.2 2.9 25 26-50 30-54 (242)
381 TIGR01189 ccmA heme ABC export 90.2 0.22 4.7E-06 50.4 3.0 25 26-50 28-52 (198)
382 cd01130 VirB11-like_ATPase Typ 90.1 0.22 4.8E-06 50.1 2.9 23 26-48 27-49 (186)
383 cd03292 ABC_FtsE_transporter F 90.1 0.22 4.7E-06 50.8 2.9 25 26-50 29-53 (214)
384 cd03230 ABC_DR_subfamily_A Thi 90.1 0.23 5E-06 49.3 2.9 25 26-50 28-52 (173)
385 cd03265 ABC_DrrA DrrA is the A 90.1 0.22 4.8E-06 51.2 2.9 24 27-50 29-52 (220)
386 cd03257 ABC_NikE_OppD_transpor 90.0 0.22 4.7E-06 51.3 2.8 25 26-50 33-57 (228)
387 PRK13539 cytochrome c biogenes 90.0 0.25 5.4E-06 50.5 3.2 25 26-50 30-54 (207)
388 cd03246 ABCC_Protease_Secretio 90.0 0.22 4.8E-06 49.4 2.7 25 26-50 30-54 (173)
389 PRK10247 putative ABC transpor 89.9 0.22 4.8E-06 51.6 2.8 25 26-50 35-59 (225)
390 cd03264 ABC_drug_resistance_li 89.9 0.22 4.8E-06 50.8 2.8 25 26-50 27-51 (211)
391 cd03245 ABCC_bacteriocin_expor 89.9 0.25 5.5E-06 50.7 3.2 31 26-58 32-62 (220)
392 cd03262 ABC_HisP_GlnQ_permease 89.8 0.23 5.1E-06 50.6 2.9 25 26-50 28-52 (213)
393 cd03217 ABC_FeS_Assembly ABC-t 89.7 0.24 5.3E-06 50.3 2.9 23 26-48 28-50 (200)
394 cd03235 ABC_Metallic_Cations A 89.7 0.24 5.3E-06 50.6 2.9 25 26-50 27-51 (213)
395 cd03254 ABCC_Glucan_exporter_l 89.7 0.23 5.1E-06 51.2 2.8 25 26-50 31-55 (229)
396 cd03297 ABC_ModC_molybdenum_tr 89.7 0.24 5.3E-06 50.7 2.9 26 25-50 24-49 (214)
397 cd03253 ABCC_ATM1_transporter 89.7 0.25 5.3E-06 51.3 2.9 25 26-50 29-53 (236)
398 COG4525 TauB ABC-type taurine 89.6 0.23 5E-06 50.9 2.5 28 26-53 33-60 (259)
399 cd03251 ABCC_MsbA MsbA is an e 89.6 0.27 5.8E-06 51.0 3.1 25 26-50 30-54 (234)
400 cd03300 ABC_PotA_N PotA is an 89.6 0.26 5.7E-06 51.2 3.1 31 26-58 28-58 (232)
401 TIGR03410 urea_trans_UrtE urea 89.6 0.24 5.3E-06 51.2 2.8 25 26-50 28-52 (230)
402 TIGR01978 sufC FeS assembly AT 89.6 0.25 5.5E-06 51.4 2.9 23 26-48 28-50 (243)
403 TIGR03864 PQQ_ABC_ATP ABC tran 89.6 0.25 5.4E-06 51.4 2.9 25 26-50 29-53 (236)
404 cd03268 ABC_BcrA_bacitracin_re 89.5 0.26 5.6E-06 50.2 2.9 25 26-50 28-52 (208)
405 cd03260 ABC_PstB_phosphate_tra 89.5 0.23 4.9E-06 51.3 2.5 23 26-48 28-50 (227)
406 KOG0098 GTPase Rab2, small G p 89.5 4.6 9.9E-05 41.2 11.5 119 23-216 5-126 (216)
407 cd03247 ABCC_cytochrome_bd The 89.5 0.25 5.5E-06 49.1 2.8 25 26-50 30-54 (178)
408 cd03250 ABCC_MRP_domain1 Domai 89.5 0.25 5.5E-06 50.1 2.8 25 26-50 33-57 (204)
409 PRK10584 putative ABC transpor 89.5 0.25 5.4E-06 51.1 2.8 25 26-50 38-62 (228)
410 PF04670 Gtr1_RagA: Gtr1/RagA 89.5 2.4 5.2E-05 44.7 10.1 25 26-50 1-25 (232)
411 PRK14250 phosphate ABC transpo 89.5 0.28 6.1E-06 51.3 3.2 31 26-58 31-61 (241)
412 cd03258 ABC_MetN_methionine_tr 89.5 0.26 5.7E-06 51.1 2.9 25 26-50 33-57 (233)
413 cd03219 ABC_Mj1267_LivG_branch 89.4 0.25 5.4E-06 51.3 2.7 25 26-50 28-52 (236)
414 cd03301 ABC_MalK_N The N-termi 89.4 0.27 5.8E-06 50.2 2.9 25 26-50 28-52 (213)
415 cd03223 ABCD_peroxisomal_ALDP 89.3 0.28 6.1E-06 48.5 2.9 25 26-50 29-53 (166)
416 PRK10895 lipopolysaccharide AB 89.3 0.29 6.3E-06 51.0 3.2 25 26-50 31-55 (241)
417 cd03237 ABC_RNaseL_inhibitor_d 89.3 0.27 5.9E-06 52.0 2.9 25 26-50 27-51 (246)
418 TIGR01184 ntrCD nitrate transp 89.3 0.27 5.8E-06 51.1 2.9 25 26-50 13-37 (230)
419 PRK13643 cbiO cobalt transport 89.3 0.28 6E-06 53.0 3.1 25 26-50 34-58 (288)
420 PRK13538 cytochrome c biogenes 89.3 0.28 6.2E-06 49.9 3.0 25 26-50 29-53 (204)
421 PRK14269 phosphate ABC transpo 89.3 0.28 6.1E-06 51.4 3.0 23 26-48 30-52 (246)
422 cd03231 ABC_CcmA_heme_exporter 89.2 0.27 6E-06 49.9 2.8 25 26-50 28-52 (201)
423 PRK13649 cbiO cobalt transport 89.2 0.27 5.8E-06 52.7 2.9 25 26-50 35-59 (280)
424 cd03229 ABC_Class3 This class 89.2 0.29 6.3E-06 48.8 2.9 25 26-50 28-52 (178)
425 cd03240 ABC_Rad50 The catalyti 89.2 0.33 7.1E-06 49.8 3.3 30 21-50 19-52 (204)
426 PRK11248 tauB taurine transpor 89.1 0.28 6E-06 52.0 2.8 25 26-50 29-53 (255)
427 COG1162 Predicted GTPases [Gen 89.0 0.22 4.8E-06 54.1 2.0 21 26-46 166-186 (301)
428 KOG0780 Signal recognition par 89.0 0.64 1.4E-05 52.0 5.5 71 132-217 184-256 (483)
429 cd03296 ABC_CysA_sulfate_impor 89.0 0.29 6.4E-06 51.0 2.9 25 26-50 30-54 (239)
430 TIGR03740 galliderm_ABC gallid 89.0 0.3 6.4E-06 50.4 2.9 25 26-50 28-52 (223)
431 PRK10619 histidine/lysine/argi 89.0 0.31 6.7E-06 51.5 3.1 30 27-58 34-63 (257)
432 COG4107 PhnK ABC-type phosphon 89.0 0.34 7.3E-06 48.8 3.1 31 26-58 34-64 (258)
433 KOG0468 U5 snRNP-specific prot 88.9 1.6 3.4E-05 51.8 8.8 141 21-219 125-267 (971)
434 TIGR02324 CP_lyasePhnL phospho 88.9 0.3 6.5E-06 50.3 2.9 25 26-50 36-60 (224)
435 CHL00131 ycf16 sulfate ABC tra 88.9 0.31 6.8E-06 51.1 3.1 23 26-48 35-57 (252)
436 COG1121 ZnuC ABC-type Mn/Zn tr 88.9 0.29 6.4E-06 52.1 2.8 32 27-60 33-64 (254)
437 cd03244 ABCC_MRP_domain2 Domai 88.9 0.31 6.6E-06 50.1 2.9 25 26-50 32-56 (221)
438 cd03236 ABC_RNaseL_inhibitor_d 88.9 0.3 6.5E-06 51.9 2.9 30 26-57 28-57 (255)
439 cd03228 ABCC_MRP_Like The MRP 88.8 0.32 7E-06 48.1 2.9 25 26-50 30-54 (171)
440 cd03275 ABC_SMC1_euk Eukaryoti 88.8 0.27 5.8E-06 51.8 2.4 26 25-50 23-48 (247)
441 cd03214 ABC_Iron-Siderophores_ 88.7 0.32 6.9E-06 48.6 2.8 25 26-50 27-51 (180)
442 PRK13638 cbiO cobalt transport 88.7 0.29 6.3E-06 52.2 2.7 25 26-50 29-53 (271)
443 PRK10908 cell division protein 88.7 0.32 6.9E-06 50.1 2.9 25 26-50 30-54 (222)
444 PRK15112 antimicrobial peptide 88.7 0.31 6.7E-06 51.9 2.8 25 26-50 41-65 (267)
445 PRK13645 cbiO cobalt transport 88.6 0.31 6.7E-06 52.6 2.9 25 26-50 39-63 (289)
446 TIGR03411 urea_trans_UrtD urea 88.6 0.32 6.9E-06 50.7 2.9 25 26-50 30-54 (242)
447 PRK14240 phosphate transporter 88.6 0.32 7E-06 51.0 2.9 23 26-48 31-53 (250)
448 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 88.6 0.32 7E-06 50.4 2.9 25 26-50 50-74 (224)
449 cd03298 ABC_ThiQ_thiamine_tran 88.5 0.33 7.1E-06 49.5 2.8 25 26-50 26-50 (211)
450 PRK14262 phosphate ABC transpo 88.5 0.31 6.6E-06 51.2 2.6 23 26-48 31-53 (250)
451 PRK14246 phosphate ABC transpo 88.4 0.34 7.5E-06 51.4 3.0 27 26-52 38-64 (257)
452 COG1341 Predicted GTPase or GT 88.4 2.5 5.3E-05 47.8 9.7 27 23-49 72-98 (398)
453 PRK11614 livF leucine/isoleuci 88.4 0.33 7.1E-06 50.5 2.8 25 26-50 33-57 (237)
454 PRK13851 type IV secretion sys 88.4 0.34 7.3E-06 54.0 3.0 31 26-58 164-194 (344)
455 PF13304 AAA_21: AAA domain; P 88.4 0.14 3.1E-06 51.3 0.0 21 28-48 3-23 (303)
456 PRK13632 cbiO cobalt transport 88.3 0.33 7.1E-06 51.9 2.7 25 26-50 37-61 (271)
457 PRK11701 phnK phosphonate C-P 88.3 0.35 7.6E-06 51.1 3.0 25 26-50 34-58 (258)
458 PRK13633 cobalt transporter AT 88.3 0.33 7.2E-06 52.1 2.8 25 26-50 38-62 (280)
459 PRK10575 iron-hydroxamate tran 88.2 0.33 7.2E-06 51.6 2.7 25 26-50 39-63 (265)
460 cd03252 ABCC_Hemolysin The ABC 88.2 0.34 7.4E-06 50.3 2.8 25 26-50 30-54 (237)
461 PRK10078 ribose 1,5-bisphospho 88.2 0.35 7.6E-06 48.6 2.8 23 26-48 4-26 (186)
462 PRK11264 putative amino-acid A 88.2 0.35 7.6E-06 50.7 2.9 25 26-50 31-55 (250)
463 cd03233 ABC_PDR_domain1 The pl 88.2 0.34 7.4E-06 49.4 2.7 24 26-49 35-58 (202)
464 PRK11247 ssuB aliphatic sulfon 88.1 0.35 7.7E-06 51.4 2.9 25 26-50 40-64 (257)
465 TIGR02770 nickel_nikD nickel i 88.1 0.34 7.4E-06 50.3 2.7 25 26-50 14-38 (230)
466 cd03248 ABCC_TAP TAP, the Tran 88.1 0.36 7.8E-06 49.8 2.9 25 26-50 42-66 (226)
467 cd03294 ABC_Pro_Gly_Bertaine T 88.1 0.36 7.8E-06 51.5 2.9 25 26-50 52-76 (269)
468 PRK13648 cbiO cobalt transport 88.1 0.34 7.5E-06 51.6 2.7 25 26-50 37-61 (269)
469 COG3839 MalK ABC-type sugar tr 88.0 0.35 7.6E-06 53.6 2.8 25 26-50 31-55 (338)
470 PRK13652 cbiO cobalt transport 88.0 0.36 7.8E-06 51.7 2.9 25 26-50 32-56 (277)
471 PRK03695 vitamin B12-transport 88.0 0.36 7.9E-06 50.8 2.9 23 26-48 24-46 (248)
472 cd03295 ABC_OpuCA_Osmoprotecti 88.0 0.37 8E-06 50.4 2.9 25 26-50 29-53 (242)
473 PRK14239 phosphate transporter 88.0 0.35 7.6E-06 50.8 2.7 23 26-48 33-55 (252)
474 TIGR02323 CP_lyasePhnK phospho 88.0 0.36 7.8E-06 50.7 2.8 25 26-50 31-55 (253)
475 PRK14261 phosphate ABC transpo 88.0 0.35 7.6E-06 50.9 2.7 23 26-48 34-56 (253)
476 PRK10771 thiQ thiamine transpo 88.0 0.38 8.2E-06 49.9 2.9 25 26-50 27-51 (232)
477 PRK14273 phosphate ABC transpo 87.9 0.35 7.6E-06 50.9 2.7 25 26-50 35-59 (254)
478 PRK11300 livG leucine/isoleuci 87.9 0.37 7.9E-06 50.7 2.8 25 26-50 33-57 (255)
479 TIGR02769 nickel_nikE nickel i 87.8 0.37 8E-06 51.2 2.8 25 26-50 39-63 (265)
480 PRK13543 cytochrome c biogenes 87.8 0.41 8.9E-06 49.2 3.0 25 26-50 39-63 (214)
481 KOG0079 GTP-binding protein H- 87.8 2.1 4.5E-05 42.1 7.5 69 159-228 68-139 (198)
482 PRK14247 phosphate ABC transpo 87.7 0.36 7.9E-06 50.6 2.6 23 26-48 31-53 (250)
483 PRK09580 sufC cysteine desulfu 87.7 0.37 8.1E-06 50.4 2.7 23 26-48 29-51 (248)
484 PRK13646 cbiO cobalt transport 87.7 0.37 8.1E-06 51.9 2.8 25 26-50 35-59 (286)
485 TIGR00968 3a0106s01 sulfate AB 87.7 0.42 9.1E-06 49.9 3.1 25 26-50 28-52 (237)
486 TIGR01277 thiQ thiamine ABC tr 87.7 0.41 8.9E-06 49.0 2.9 25 26-50 26-50 (213)
487 PRK14242 phosphate transporter 87.6 0.36 7.8E-06 50.7 2.5 22 26-47 34-55 (253)
488 cd03267 ABC_NatA_like Similar 87.6 0.38 8.3E-06 50.2 2.7 25 26-50 49-73 (236)
489 TIGR00972 3a0107s01c2 phosphat 87.6 0.4 8.6E-06 50.3 2.8 25 26-50 29-53 (247)
490 PRK13651 cobalt transporter AT 87.5 0.38 8.3E-06 52.5 2.8 25 26-50 35-59 (305)
491 PRK14241 phosphate transporter 87.5 0.38 8.3E-06 50.8 2.7 25 26-50 32-56 (258)
492 PRK13548 hmuV hemin importer A 87.5 0.4 8.7E-06 50.8 2.8 25 26-50 30-54 (258)
493 PRK11831 putative ABC transpor 87.5 0.4 8.7E-06 51.1 2.8 25 26-50 35-59 (269)
494 PRK14274 phosphate ABC transpo 87.5 0.38 8.2E-06 50.9 2.6 24 26-49 40-63 (259)
495 PRK15056 manganese/iron transp 87.4 0.42 9E-06 51.1 2.9 25 26-50 35-59 (272)
496 TIGR03771 anch_rpt_ABC anchore 87.4 0.42 9E-06 49.5 2.8 25 26-50 8-32 (223)
497 PRK13641 cbiO cobalt transport 87.4 0.42 9.1E-06 51.5 2.9 25 26-50 35-59 (287)
498 PRK13635 cbiO cobalt transport 87.4 0.42 9.1E-06 51.4 2.9 25 26-50 35-59 (279)
499 TIGR03005 ectoine_ehuA ectoine 87.4 0.43 9.2E-06 50.2 2.9 25 26-50 28-52 (252)
500 PRK09984 phosphonate/organopho 87.3 0.4 8.6E-06 50.8 2.7 25 26-50 32-56 (262)
No 1
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=100.00 E-value=2e-59 Score=544.06 Aligned_cols=628 Identities=19% Similarity=0.185 Sum_probs=480.3
Q ss_pred CccHHHHHHHHHHhhhhcC--CCCCCCEEEEEeccCCchHHHHHHHhCCccceecCccccccceEEEEeeCCCCCCCceE
Q 004351 1 MHSLYEAYNELHGLAQELE--TPFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCH 78 (759)
Q Consensus 1 m~~L~~~~n~L~~l~~~~~--~~i~lPqIVVVG~QSsGKSSLLEAL~G~~fp~~g~g~cTR~P~~l~l~~~~~~~~~~~~ 78 (759)
|+.+++.+|+||+....++ ..+++|+|||||+||+|||||||+|+|+.|.|||.|+|||||++++|.+......|.+.
T Consensus 4 ~~~li~~vn~lqd~~~~l~~~~~i~lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~givTRrPlvlqL~~~~~~~~e~~~ 83 (657)
T KOG0446|consen 4 MRLLIPLSNPLQDKLEILGSSSFIPLPQIVVVGGQSSGKSSVLESLVGFVFLPRGVGIVTRRPLILQLSIVAGGDEEEAS 83 (657)
T ss_pred hhhccccchHHHHHHHHhcCCCcccCCceEEecCCCCcchhHHHHhhccccccccccceecccceeecccccCCcccchh
Confidence 7889999999999988775 56999999999999999999999999999999999999999999999998765445555
Q ss_pred EecCCCCCCcccccChHHHHHHHHHHHhhhhhccCCCccccceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHH
Q 004351 79 LASSDVDPTLAQEKSLQEIQSFIEAENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQA 158 (759)
Q Consensus 79 i~~~d~~~~~~~~~~~~~l~~~Ie~~~~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~~~q~~~~e~~~ 158 (759)
+...+ ......|++++++.|+.+++++.|.+ +++|+.+|.|+|.+|++++||+|||||++.+++++||++++
T Consensus 84 f~~h~---~~~~~~D~~~vrkeI~~et~~~~g~~--kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp~di~--- 155 (657)
T KOG0446|consen 84 FLTHD---KKKRFTDFEEVRKEIRSETDRITGSN--KGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPDDIE--- 155 (657)
T ss_pred ccccc---cccccCCHHHHHHHHHhhHHHhcCCC--CCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCCccHH---
Confidence 54322 45677899999999999999999876 89999999999999999999999999999999999998774
Q ss_pred HHHHHHHHHHhcCccceeEeeccc-CCcCcHHHHHHHHHhCcCCCeEEEEecCCCcccccccChhhHHHhhCCCCCCCCc
Q 004351 159 RAVESLVRAKMQHREFIILCLEDC-SDWSNATTRRVVMQIDPELKRTIIVSTKLDTKIPQFARASDVEVFLSPPACTLDG 237 (759)
Q Consensus 159 ~~v~~lv~~Yi~~~~~IIL~V~~~-~D~~~~~~l~lar~~Dp~g~RTIgVlTK~D~~~~~~~~~~~~~~~L~~~~~~l~~ 237 (759)
.++++|++.|++++++|||+|.++ .|++|++++++|+++||.|.|||||+||+|++ ++|+++...|.|+. .+
T Consensus 156 ~qI~~mi~~yi~~~~~iILav~~an~d~ats~alkiarevDp~g~RTigvitK~Dlm----dkGt~~~~~L~g~~---~~ 228 (657)
T KOG0446|consen 156 EEIKSMIEEYIEKPNRIILAVTPANSDIATSPALVVAREVDPGGSRTLEVITKFDFM----DKGTNAVTRLVGRP---IT 228 (657)
T ss_pred HHHHHHHHHhccccchhhhhccchhhhhhcCHHHHHHHhhCCCccchhHHhhhHHhh----hcCCcceeeecCCc---cc
Confidence 678899999999999999999866 79999999999999999999999999999995 66778888888866 34
Q ss_pred ccccCCCeeeecCCCCccCCCCCCCCCHHHHHHhhhhHHHhHHHHHHHHh--cCCccccccCCcchHHHHHHHHHHHHHH
Q 004351 238 FILGGSPFFTSVPSGRVGTGHDSVYSSNEEFKQAIFIREMEDITSLEEKL--GRSLSKQERSRIGVSKLRSFLEELLQKR 315 (759)
Q Consensus 238 ~~LG~~~ffvs~P~~rvg~~~d~v~rs~~~~~~~~~~~e~~d~~~lE~~f--~~~w~~~~~~r~Gi~~Lr~~Ls~lL~~~ 315 (759)
+++| |+.. ++|++.++..+.+..++. ..|..| ..+-++....++|+++|.+.|+..|..|
T Consensus 229 l~~g---~v~v------------vnR~q~di~~~k~~~~al---~~e~~~f~~~p~y~~~~~~~g~p~La~~L~~~l~~h 290 (657)
T KOG0446|consen 229 LKVG---YVGV------------VNRSQSIIDFKKSILEAL---NDEVPSFESVPSYPILLTISGVPYLALLLPGYLQSH 290 (657)
T ss_pred cccc---eeee------------eccchhhhhhhhhHHHHH---HhhhhhhhccccccccccccCcchHHHHHHHHHHHH
Confidence 5554 4432 356677766555443332 234443 6677777777799999999999999999
Q ss_pred HHhhhhhhHHHHHHHhhhHHHHHHHHHHHHhhcCc--cch--hhhhHHHHHHHHHHHHHhhcccccCCCcccchhhhhhh
Q 004351 316 YMDSVPMIIPLLEKEYCSTTRKLNEINKELSTLDE--VKL--KEKGRVFHDLFLTKLSLLLKGTVVAPPDKFGETLQNER 391 (759)
Q Consensus 316 i~~~LP~i~~~L~~e~~~i~~~L~~~~~eL~~Lg~--~~~--~~~~~~~~~~F~~~is~~l~G~~~a~~~~~g~tl~de~ 391 (759)
|++++|.|...|+ .++.+.+++|.++|. +.. .......+..|+..+...+.|...
T Consensus 291 i~~~lP~l~~~i~-------~~~~~~~~el~~~g~~~~~~~~~~~ll~~i~~~~~~~~~~v~g~~~-------------- 349 (657)
T KOG0446|consen 291 IRDQLPELKTKIN-------KLLEKYQDELNRIGAVDVDLANSAALLAIIREDPRGLRTGVIGKLD-------------- 349 (657)
T ss_pred HHhcCcHHHHHHH-------HHHHHHHHHHHHhcccCCccchhhHHHHHHHHHHHHHHHhhccccc--------------
Confidence 9999999999885 588999999999995 221 122345578899888888887632
Q ss_pred hcCCcccCCCCCCCCcccCCCCcceeechhHHHHHHHHh-h-hhcCcccCCCCCHHHHHHHhCccccCCCCcc--hhhHH
Q 004351 392 INGGAFVGTDGLQFPHKLIPNAGMRLYGGAQYHRAMAEF-R-FMVGGIKCPPITREEIVNACGVEDIHDGTNY--SRTAC 467 (759)
Q Consensus 392 ~~~g~~~~~~G~~~~~~~~p~~~~rL~gGaq~~R~l~Ef-~-~~~~~~~~p~~s~eeia~a~g~~~~~~~~~~--~~aa~ 467 (759)
+ +| +-.|.|||...+.++++ . ......++-.++..+|..++-....+.-..| +.++.
T Consensus 350 ----------~-------~~--~~elsggari~~~F~~~f~~~i~~i~~~~~~~~~~i~~~i~~~~G~~~~lf~p~~afe 410 (657)
T KOG0446|consen 350 ----------L-------VP--TKALSGGARINYPFHGGFPGVIKKLPPDRKLLGQNIEKLVSEASGIRPSLFVPESSFE 410 (657)
T ss_pred ----------c-------cc--hhcccchhhhhhhhhhccchhhhcCCcchhhhHHHHHHHHHhccCCCccccCChHHHH
Confidence 1 23 44688999999999994 3 3333334445677777776633232222223 88888
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhh
Q 004351 468 VIAVAKARDTFEPFLHQLGCRLLHILKRLLPISIYLLQKEGEYLSGHEVFLRRVASAFNNFAESTERACREKCMEDLVST 547 (759)
Q Consensus 468 ~ia~~~~~~~~~Pl~~~l~~r~~~il~rl~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~fv~~~~~~c~~~~~~~l~s~ 547 (759)
.|+....+..-+|.+.++- .|.+.+..++...+.+- .+.+||.+...+.++...|+++.....++++++-.+-.
T Consensus 411 ~lvk~~i~~l~~p~l~~v~----~v~~el~~~~~~~~~~~--~l~rfp~l~~~~~~~~~~~~~~~~~~t~~~v~~~i~~e 484 (657)
T KOG0446|consen 411 SLVKGQIQSLRDPSLKCVE----EVHRELVRIVADSIRAT--ELKRFPVLYSELVEIASSLIAEGLDETKKAVKNLIDLE 484 (657)
T ss_pred HHHHHHHHHHhhhHHHHHH----HHHHHHHHHHHHHhhhH--HHHHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 8888888888888886654 46777777777777642 68899999999999999999999999999999777666
Q ss_pred hhhh-h--hccccccchhhhhhhcccCCccccccccccCCCCcccccccccccCccCCCCCcccccccccccCCCCCCcc
Q 004351 548 TRYV-T--WSLHNKNRAGLRQFLDSFGSTEQSAVLSNSLSMPLCQESSFVSVANEKHDTKPRTDVKLSQVASGVDSSSSV 624 (759)
Q Consensus 548 t~~v-~--w~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (759)
..|+ | |+..+. .++.++..... ++ .+..... + . . -+..
T Consensus 485 ~~yinT~h~df~~~----~~~al~~~~~~---~~---~~~~~~~---~--------------~----~--------~~~~ 525 (657)
T KOG0446|consen 485 QSYLNTDHPDFRSL----TDSALSSVTSP---SI---AAMKLIS---A--------------Q----L--------LKEE 525 (657)
T ss_pred HHHhcCcChhhhhh----HHHHHHHhhcc---cc---ccccccc---c--------------c----c--------cccc
Confidence 6666 3 444322 21222121100 00 0000000 0 0 0 0111
Q ss_pred chhhhHHHHhhhhhhhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhhhhhhHHHHHHHHhhcccchh
Q 004351 625 QTTETRLADLLDNTLWNRRLAPSSERIVYALVQQIFHGIREYFLASAELKFNCFLLMPVVDKLPALLREDLESAFEGDLD 704 (759)
Q Consensus 625 ~~~~~~~~~~~~~~l~~r~~~~~s~~~V~~l~~~~f~~iR~~~~~~~~~k~n~ffL~P~~~~l~~~l~~~l~~~~~~~~~ 704 (759)
..+.....+.+.+..|+..+.+.......+...+.+..+...+.++....|+|+=+++++|..|.+|.-.|...+.++|.
T Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sY~~iv~~~i~d~vpk~i~~~lv~~~k~~l~ 605 (657)
T KOG0446|consen 526 LGECNSALKAIKNAVGSIRLDPSDIVLSRALVLKKRECKETEEISSCPESYLNIVSDKLVDTVPKALNHELLNEFKDDLP 605 (657)
T ss_pred cccccchhhhhcchhhhhhhcccchhhhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22233566777777888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hhhchhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004351 705 NVFDITNLRHSLSQQKSDTEIEMKRIKKLKEKFKLIHEQFISHH 748 (759)
Q Consensus 705 ~~f~~~~~~~~l~~~~~~l~~~~~~~~~~~~kf~~~~~~l~~~~ 748 (759)
..|+..-.+ . .++.++|..|...+++-+++++.--+.|+.+.
T Consensus 606 ~~l~~~L~~-~-~~~~~~ll~E~~~i~~~R~~~~~~l~~L~~a~ 647 (657)
T KOG0446|consen 606 NELDQRLYA-G-DEQLESLLKEDPRIKRRRELQQKRLLALQKAL 647 (657)
T ss_pred HHHHHHHHh-c-hhHHHHHHccCHHHHHHHHHHHHHHHHHHHHH
Confidence 888877666 4 77777777777777777777777666665554
No 2
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=100.00 E-value=4.5e-42 Score=357.03 Aligned_cols=226 Identities=27% Similarity=0.359 Sum_probs=188.8
Q ss_pred CccHHHHHHHHHHhhhh--cCCCCCCCEEEEEeccCCchHHHHHHHhCCccceecCccccccceEEEEeeCCCCCCCceE
Q 004351 1 MHSLYEAYNELHGLAQE--LETPFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCH 78 (759)
Q Consensus 1 m~~L~~~~n~L~~l~~~--~~~~i~lPqIVVVG~QSsGKSSLLEAL~G~~fp~~g~g~cTR~P~~l~l~~~~~~~~~~~~ 78 (759)
|+.|...+|+|+.+... +++.+++|+|||||+||+|||||||+|+|.+|.|++.|+|||||++|+|++.+. .|.+.
T Consensus 1 ~~~~~~l~~~i~~l~~~~G~~~~i~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~--~~~~~ 78 (240)
T smart00053 1 MEKLIPLVNKLQDAFSALGQEKDLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSST--EYAEF 78 (240)
T ss_pred CccHHHHHHHHHHHHHHcCCCCCCCCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCC--cceEE
Confidence 67777777776666433 457899999999999999999999999999976799999999999999998654 35555
Q ss_pred EecCCCCCCcccccChHHHHHHHHHHHhhhhhccCCCccccceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHH
Q 004351 79 LASSDVDPTLAQEKSLQEIQSFIEAENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQA 158 (759)
Q Consensus 79 i~~~d~~~~~~~~~~~~~l~~~Ie~~~~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~~~q~~~~e~~~ 158 (759)
+... .....+++++++.|+++++++.+.+ ++||+++|+|+|++|++|+|+||||||++..+.++++. ...
T Consensus 79 ~~~~-----~~~~~~~~~v~~~i~~~~~~~~~~~--~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~---~~~ 148 (240)
T smart00053 79 LHCK-----GKKFTDFDEVRNEIEAETDRVTGTN--KGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPP---DIE 148 (240)
T ss_pred EecC-----CcccCCHHHHHHHHHHHHHHhcCCC--CcccCcceEEEEeCCCCCceEEEeCCCccccccCCccH---HHH
Confidence 5432 2455689999999999999887654 78999999999999999999999999998776555543 345
Q ss_pred HHHHHHHHHHhcCccceeEeeccc-CCcCcHHHHHHHHHhCcCCCeEEEEecCCCcccccccChhhHHHhhCCCCCCCCc
Q 004351 159 RAVESLVRAKMQHREFIILCLEDC-SDWSNATTRRVVMQIDPELKRTIIVSTKLDTKIPQFARASDVEVFLSPPACTLDG 237 (759)
Q Consensus 159 ~~v~~lv~~Yi~~~~~IIL~V~~~-~D~~~~~~l~lar~~Dp~g~RTIgVlTK~D~~~~~~~~~~~~~~~L~~~~~~l~~ 237 (759)
..+++|+..||+++++|||+|+++ .|+.++.++++++++||.+.|||||+||+|...+ +++|.++|.|... +
T Consensus 149 ~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~~~rti~ViTK~D~~~~----~~~~~~~~~~~~~---~ 221 (240)
T smart00053 149 EQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDPQGERTIGVITKLDLMDE----GTDARDILENKLL---P 221 (240)
T ss_pred HHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHHcCCcEEEEEECCCCCCc----cHHHHHHHhCCcc---c
Confidence 789999999999999999999976 6999999999999999999999999999999743 4568999998653 3
Q ss_pred ccccCCCeeee
Q 004351 238 FILGGSPFFTS 248 (759)
Q Consensus 238 ~~LG~~~ffvs 248 (759)
+.+ |||+.
T Consensus 222 l~~---g~~~v 229 (240)
T smart00053 222 LRR---GYIGV 229 (240)
T ss_pred cCC---CEEEE
Confidence 344 58874
No 3
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=99.97 E-value=7.5e-30 Score=278.87 Aligned_cols=287 Identities=25% Similarity=0.362 Sum_probs=212.6
Q ss_pred cHHHHHHHHHHhhhhcC----CCCCCCEEEEEeccCCchHHHHHHHhCCc-cceecCccccccceEEEEeeCCCCCCCce
Q 004351 3 SLYEAYNELHGLAQELE----TPFDAPAVLVVGHQTDGKSALVEALMGFQ-FNHVGGGTKTRRPITLHMKYNPLCELPLC 77 (759)
Q Consensus 3 ~L~~~~n~L~~l~~~~~----~~i~lPqIVVVG~QSsGKSSLLEAL~G~~-fp~~g~g~cTR~P~~l~l~~~~~~~~~~~ 77 (759)
.|||.|.+..++-.+.+ ..=.||++|||||||+||+||||.|...+ ||+..+.+.||.|+-++|..+|.. +
T Consensus 283 SLIDMYSEVLD~Ls~YD~sYnt~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyH----V 358 (980)
T KOG0447|consen 283 SLIDMYSEVLDVLSDYDASYNTQDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHH----V 358 (980)
T ss_pred HHHHHHHHHHHHHhcccccccccccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcch----h
Confidence 58899998888876654 34579999999999999999999999999 564444578999999999988753 2
Q ss_pred EEecCCCCC-CcccccChHHHHHHHHHHHhhhhhccCCCccccceEEEEEEecCCCCcEEEeCCCCcCCCC-CCCchhhH
Q 004351 78 HLASSDVDP-TLAQEKSLQEIQSFIEAENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAP-GRKNRALQ 155 (759)
Q Consensus 78 ~i~~~d~~~-~~~~~~~~~~l~~~Ie~~~~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~-~~q~~~~e 155 (759)
..+.+.++. ...++.|+.++++.++-....--+ +++.+|+.+|.+.+.||+++.+.||||||++..-+ +-.+.
T Consensus 359 AqFrDSsREfDLTKE~DLq~LR~e~E~RMr~sVr--~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~d--- 433 (980)
T KOG0447|consen 359 ALFKDSSREFDLTKEEDLAALRHEIELRMRKNVK--EGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPD--- 433 (980)
T ss_pred hhhccccccccccchhHHHHHHHHHHHHHHhccc--CCcccccceEEEeecCCCcceeEEecCCchhhhhccccccc---
Confidence 222222222 234667888888887743322112 23789999999999999999999999999998654 33322
Q ss_pred HHHHHHHHHHHHHhcCccceeEeeccc-CCcCcHHHHHHHHHhCcCCCeEEEEecCCCcccccccChhhHHHhhCCCCCC
Q 004351 156 DQARAVESLVRAKMQHREFIILCLEDC-SDWSNATTRRVVMQIDPELKRTIIVSTKLDTKIPQFARASDVEVFLSPPACT 234 (759)
Q Consensus 156 ~~~~~v~~lv~~Yi~~~~~IIL~V~~~-~D~~~~~~l~lar~~Dp~g~RTIgVlTK~D~~~~~~~~~~~~~~~L~~~~~~ 234 (759)
..+.|-.|.+.||++||+||||+.++ .|...+..-+++..+||.|.|||+|+||.|+.....+.+.-...+|+|+--+
T Consensus 434 -TKd~I~~msKayM~NPNAIILCIQDGSVDAERSnVTDLVsq~DP~GrRTIfVLTKVDlAEknlA~PdRI~kIleGKLFP 512 (980)
T KOG0447|consen 434 -TKETIFSISKAYMQNPNAIILCIQDGSVDAERSIVTDLVSQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQIIEGKLFP 512 (980)
T ss_pred -chHHHHHHHHHHhcCCCeEEEEeccCCcchhhhhHHHHHHhcCCCCCeeEEEEeecchhhhccCCHHHHHHHHhcCccc
Confidence 25678899999999999999999987 5888899999999999999999999999999888778888888999995421
Q ss_pred CCcccccCCCeeeecCCCCccCCCCCCCCCHHHHHHhhhhHHHhHHHHHHHHh-cCCcc---ccccCCcchHHHHHHHHH
Q 004351 235 LDGFILGGSPFFTSVPSGRVGTGHDSVYSSNEEFKQAIFIREMEDITSLEEKL-GRSLS---KQERSRIGVSKLRSFLEE 310 (759)
Q Consensus 235 l~~~~LG~~~ffvs~P~~rvg~~~d~v~rs~~~~~~~~~~~e~~d~~~lE~~f-~~~w~---~~~~~r~Gi~~Lr~~Ls~ 310 (759)
-..|| ||..+ .|+ |.. ..|.+++++ -.|++| ++.+- -+-++.+-+.+|--..|.
T Consensus 513 --MKALG---YfaVV-TGr-Gns----sdSIdaIR~-----------YEE~FF~nSkLl~~~vlkphQvTtRNlSLAVSD 570 (980)
T KOG0447|consen 513 --MKALG---YFAVV-TGK-GNS----SESIEAIRE-----------YEEEFFQNSKLLKTSMLKAHQVTTRNLSLAVSD 570 (980)
T ss_pred --hhhcc---eeEEE-ecC-CCc----chhHHHHHH-----------HHHHHhhhhHHHHhhccchhhhcccchhHHHHH
Confidence 13455 55543 344 211 123344432 123333 22221 246778889999999999
Q ss_pred HHHHHHHhhhh
Q 004351 311 LLQKRYMDSVP 321 (759)
Q Consensus 311 lL~~~i~~~LP 321 (759)
-+|+.+++++-
T Consensus 571 cFWkMVResiE 581 (980)
T KOG0447|consen 571 CFWKMVRESVE 581 (980)
T ss_pred HHHHHHHHHHH
Confidence 99999887654
No 4
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.87 E-value=2.5e-21 Score=189.40 Aligned_cols=167 Identities=27% Similarity=0.367 Sum_probs=127.2
Q ss_pred EEEEeccCCchHHHHHHHhCCccceecCccccccceEEEEeeCCCCCCCceEEecCCCCCCcccccChHHHHHHHHHHHh
Q 004351 27 VLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEIQSFIEAENM 106 (759)
Q Consensus 27 IVVVG~QSsGKSSLLEAL~G~~fp~~g~g~cTR~P~~l~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~l~~~Ie~~~~ 106 (759)
|+|+|.+|||||||||||+|.++.|++.+.||++|++++...++............+ ......+++++.+.+.....
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 77 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKD---GSEEFEELNELREQIDEEFD 77 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEE---ETEEBCCHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCcccccccccceeEEEecccCccccccccccccc---cccchhhHHHHHHhhhcccc
Confidence 799999999999999999999987799999999999999988876442222222211 23456778888888877665
Q ss_pred hhhhccCCCccccceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecc-cCCc
Q 004351 107 RLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLED-CSDW 185 (759)
Q Consensus 107 ~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~-~~D~ 185 (759)
...+.. ..++..++.+....+...+++||||||+....... .+++.+|+. ...++++|.+ ..++
T Consensus 78 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~------------~~~~~~~~~-~~d~vi~V~~~~~~~ 142 (168)
T PF00350_consen 78 SIEGKL--EQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEH------------TEITEEYLP-KADVVIFVVDANQDL 142 (168)
T ss_dssp HHHTSS--S-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTT------------SHHHHHHHS-TTEEEEEEEETTSTG
T ss_pred cccccc--cccccceeEEeeccccccceEEEeCCccccchhhh------------HHHHHHhhc-cCCEEEEEeccCccc
Confidence 554322 46888899999999999999999999997632211 178999994 4556666654 4678
Q ss_pred CcHHHHHHHHHhCcCCCeEEEEecCC
Q 004351 186 SNATTRRVVMQIDPELKRTIIVSTKL 211 (759)
Q Consensus 186 ~~~~~l~lar~~Dp~g~RTIgVlTK~ 211 (759)
.+++...+.+..++...|+|+|+||+
T Consensus 143 ~~~~~~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 143 TESDMEFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp GGHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred chHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 88888999999999999999999995
No 5
>PF01031 Dynamin_M: Dynamin central region; InterPro: IPR000375 Dynamin is a microtubule-associated force-producing protein of 100 Kd which is involved in the production of microtubule bundles. At the N terminus of dynamin is a GTPase domain (see IPR001401 from INTERPRO), and at the C terminus is a PH domain (see IPR001849 from INTERPRO). Between these two domains lies a central region of unknown function, which this entry represents.; GO: 0005525 GTP binding; PDB: 3ZVR_A 2AKA_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D 1JWY_B 1JX2_B 3SZR_A ....
Probab=99.84 E-value=1.3e-19 Score=195.06 Aligned_cols=264 Identities=18% Similarity=0.196 Sum_probs=191.3
Q ss_pred HHhhCCCCCCCCcccccCCCeeeecCCCCccCCCCCCCCCHHHHHHhhhhHHHhHHHHHHHHh--cCCccccccCCcchH
Q 004351 225 EVFLSPPACTLDGFILGGSPFFTSVPSGRVGTGHDSVYSSNEEFKQAIFIREMEDITSLEEKL--GRSLSKQERSRIGVS 302 (759)
Q Consensus 225 ~~~L~~~~~~l~~~~LG~~~ffvs~P~~rvg~~~d~v~rs~~~~~~~~~~~e~~d~~~lE~~f--~~~w~~~~~~r~Gi~ 302 (759)
.++|.|.. .++++| ||+. +|||++++..+.+..++. ..|..| ++||++.+++++|++
T Consensus 2 ~~iL~n~~---~pLklG---y~~V------------~nrsq~di~~~~s~~~a~---~~E~~fF~~~~~~~~~~~~~G~~ 60 (295)
T PF01031_consen 2 MDILRNKV---IPLKLG---YVGV------------KNRSQQDINDGKSIEEAR---QKEKEFFSNHPWYSSPADRCGTP 60 (295)
T ss_dssp HHHHTTSS---S--TT----EEEE--------------S-HHHHHTTEEHHHHH---HHHHHHHHHSTTTGGGGGGSSHH
T ss_pred hHHhCCCe---eccCCC---eEEE------------ecCCccccccCCCHHHHH---HHHHHHHhcccccCCcccccchH
Confidence 46788866 455655 7764 467899998888776654 345554 555555599999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHhhhHHHHHHHHHHHHhhcCccch-hhhh-H----HHHHHHHHHHHHhhcccc
Q 004351 303 KLRSFLEELLQKRYMDSVPMIIPLLEKEYCSTTRKLNEINKELSTLDEVKL-KEKG-R----VFHDLFLTKLSLLLKGTV 376 (759)
Q Consensus 303 ~Lr~~Ls~lL~~~i~~~LP~i~~~L~~e~~~i~~~L~~~~~eL~~Lg~~~~-~~~~-~----~~~~~F~~~is~~l~G~~ 376 (759)
+|+.+|+++|.+||+++||.|...|+ .+|.+++++|++||+++. +... + ..+..|++.+...++|.+
T Consensus 61 ~L~~~L~~~L~~~I~~~LP~l~~~I~-------~~l~~~~~eL~~lG~~~~~~~~~~~~~l~~~~~~f~~~~~~~i~G~~ 133 (295)
T PF01031_consen 61 ALRKRLSELLVEHIRKSLPSLKSEIQ-------KKLQEAEKELKRLGPPRPETPEEQRAYLLQIISKFSRIFKDAIDGEY 133 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHTHHHCSSSCHHHHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHH-------HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 99999999999999999999998874 689999999999999988 4443 2 236889999999999876
Q ss_pred cCCCcccchhhhhhhhcCCcccCCCCCCCCcccCCCCcceeechhHHHHHHHHh-hhhcC-cccCCCCCHHHHHHHhCcc
Q 004351 377 VAPPDKFGETLQNERINGGAFVGTDGLQFPHKLIPNAGMRLYGGAQYHRAMAEF-RFMVG-GIKCPPITREEIVNACGVE 454 (759)
Q Consensus 377 ~a~~~~~g~tl~de~~~~g~~~~~~G~~~~~~~~p~~~~rL~gGaq~~R~l~Ef-~~~~~-~~~~p~~s~eeia~a~g~~ 454 (759)
.. .+ ....|.|||.++++++++ ..... .-.+..++.++|..++...
T Consensus 134 ~~-------------------------~~-------~~~~l~~~ari~~~f~~~~~~~~~~~~~~~~~~~~eI~~~i~~~ 181 (295)
T PF01031_consen 134 SD-------------------------EF-------STNELRGGARIRYIFNEWFDKFLEKIDPFEDLSDEEIRTAIRNS 181 (295)
T ss_dssp -------------------------------------TTS--HHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHH-
T ss_pred cc-------------------------cc-------cccccchhhHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHhh
Confidence 31 00 234688999999999996 22222 2234457899999988654
Q ss_pred ccCCCCcc--hhhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHhhccccccchHHHHHHHHHHHHHHHHH
Q 004351 455 DIHDGTNY--SRTACVIAVAKARDTFEPFLHQLGCRLLHILKRLLPISIYLLQKEGEYLSGHEVFLRRVASAFNNFAEST 532 (759)
Q Consensus 455 ~~~~~~~~--~~aa~~ia~~~~~~~~~Pl~~~l~~r~~~il~rl~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~fv~~~ 532 (759)
.+-..|+| ..+...|.+...+.|-+|.+.++-. |...+..++..++.+ .+.+||.+..+++++...++++.
T Consensus 182 ~G~elp~f~p~~afe~Li~~~i~~l~~Pa~~cv~~----V~~~l~~i~~~~~~~---~~~~fp~L~~~i~~~v~~~l~~~ 254 (295)
T PF01031_consen 182 RGRELPGFVPESAFESLIRKQIEKLEEPALQCVEE----VHEELQRIVEQVLEK---EFERFPNLKEAIKEAVQQLLEEC 254 (295)
T ss_dssp -S-SSS-SCCHHHHHHHHHHHHHTTHHHHHHHHHH----HHHHHHHHHHHHHCH---HHTTSHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhHHHHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHHHHhhcch---hcCCchHHHHHHHHHHHHHHHHH
Confidence 44455555 8999999999999998888766543 455556666666653 57789999999999999999999
Q ss_pred HHHHHHHhHHhhhhhhhhhhhcc
Q 004351 533 ERACREKCMEDLVSTTRYVTWSL 555 (759)
Q Consensus 533 ~~~c~~~~~~~l~s~t~~v~w~l 555 (759)
.+.|++++.+-++.-+.|++-.-
T Consensus 255 ~~~a~~~i~~li~~E~~~i~T~~ 277 (295)
T PF01031_consen 255 REPAKEMIENLIDMELSYINTQH 277 (295)
T ss_dssp HHHHHHHHHHHHHHHTTS--TTS
T ss_pred HHHHHHHHHHHHHHhcccCCCCC
Confidence 99999999999998877777543
No 6
>PRK09866 hypothetical protein; Provisional
Probab=99.43 E-value=1.1e-09 Score=126.19 Aligned_cols=45 Identities=20% Similarity=0.253 Sum_probs=40.6
Q ss_pred CEEEEEeccCCchHHHHHHHhCCccceecCccccccceEEEEeeC
Q 004351 25 PAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYN 69 (759)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~~fp~~g~g~cTR~P~~l~l~~~ 69 (759)
|.++|||..|+|||||+|+|+|..+.|++...+|.+|+.++..++
T Consensus 70 ~~valvG~sgaGKSTLiNaL~G~~Vlpt~~~~~t~lpT~i~~~pg 114 (741)
T PRK09866 70 MVLAIVGTMKAGKSTTINAIVGTEVLPNRNRPMTALPTLIRHTPG 114 (741)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCccccCCCcccccccEEEEecCC
Confidence 999999999999999999999999988999999999996655443
No 7
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.37 E-value=4.7e-12 Score=127.42 Aligned_cols=125 Identities=20% Similarity=0.224 Sum_probs=94.3
Q ss_pred CCCEEEEEeccCCchHHHHHHHhCCc-cceecCccccccceEEEEeeCCCCCCCceEEecCCCCCCcccccChHHHHHHH
Q 004351 23 DAPAVLVVGHQTDGKSALVEALMGFQ-FNHVGGGTKTRRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEIQSFI 101 (759)
Q Consensus 23 ~lPqIVVVG~QSsGKSSLLEAL~G~~-fp~~g~g~cTR~P~~l~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~l~~~I 101 (759)
++|+|+++|..++||||+||+|+|.. +.+++ ..|+.+ +.
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtS--------------ktPGrT----------------q~---------- 62 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTS--------------KTPGRT----------------QL---------- 62 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecC--------------CCCCcc----------------ce----------
Confidence 78999999999999999999999977 54331 112110 00
Q ss_pred HHHHhhhhhccCCCccccceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEee--
Q 004351 102 EAENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCL-- 179 (759)
Q Consensus 102 e~~~~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V-- 179 (759)
+-.-++. ..+.||||||++...... +..+.+..|+.+|++.+.+|..+|
T Consensus 63 -------------------iNff~~~----~~~~lVDlPGYGyAkv~k------~~~e~w~~~i~~YL~~R~~L~~vvll 113 (200)
T COG0218 63 -------------------INFFEVD----DELRLVDLPGYGYAKVPK------EVKEKWKKLIEEYLEKRANLKGVVLL 113 (200)
T ss_pred -------------------eEEEEec----CcEEEEeCCCcccccCCH------HHHHHHHHHHHHHHhhchhheEEEEE
Confidence 0011221 228899999999876532 346789999999999988877775
Q ss_pred cccCCcCcHHHHHHHHHhCcCCCeEEEEecCCCcccc
Q 004351 180 EDCSDWSNATTRRVVMQIDPELKRTIIVSTKLDTKIP 216 (759)
Q Consensus 180 ~~~~D~~~~~~l~lar~~Dp~g~RTIgVlTK~D~~~~ 216 (759)
+|+.......+.+|...+...|..++.|+||+|++..
T Consensus 114 iD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~ 150 (200)
T COG0218 114 IDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKK 150 (200)
T ss_pred EECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCCh
Confidence 5887777777889999999999999999999999853
No 8
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=98.93 E-value=1.1e-08 Score=94.41 Aligned_cols=69 Identities=16% Similarity=0.372 Sum_probs=42.8
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHHHHHhCcCCCeEEEEecC
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTK 210 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~RTIgVlTK 210 (759)
.+.|+||||+...... ......+ ..+.+.+...+.+|++|. +.+..+.....+.+++. .+.+++.|+||
T Consensus 48 ~~~~vDtpG~~~~~~~------~~~~~~~-~~~~~~~~~~d~ii~vv~-~~~~~~~~~~~~~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 48 KFILVDTPGINDGESQ------DNDGKEI-RKFLEQISKSDLIIYVVD-ASNPITEDDKNILRELK-NKKPIILVLNK 116 (116)
T ss_dssp EEEEEESSSCSSSSHH------HHHHHHH-HHHHHHHCTESEEEEEEE-TTSHSHHHHHHHHHHHH-TTSEEEEEEES
T ss_pred eEEEEeCCCCcccchh------hHHHHHH-HHHHHHHHHCCEEEEEEE-CCCCCCHHHHHHHHHHh-cCCCEEEEEcC
Confidence 4579999999764310 1111223 334455566665555554 54444555667777776 78999999998
No 9
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=98.89 E-value=4.4e-09 Score=103.28 Aligned_cols=73 Identities=15% Similarity=0.256 Sum_probs=46.4
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhc-CccceeEeecccCCcCcHHHHHHHHHhCcCCCeEEEEecC
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQ-HREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTK 210 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~-~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~RTIgVlTK 210 (759)
..+.||||||+.+-.... .-+.+..+|+. ++-.+|++|+|++.+ ...+.+..++-..|.++|.|+||
T Consensus 47 ~~~~lvDlPG~ysl~~~s----------~ee~v~~~~l~~~~~D~ii~VvDa~~l--~r~l~l~~ql~e~g~P~vvvlN~ 114 (156)
T PF02421_consen 47 QQVELVDLPGIYSLSSKS----------EEERVARDYLLSEKPDLIIVVVDATNL--ERNLYLTLQLLELGIPVVVVLNK 114 (156)
T ss_dssp EEEEEEE----SSSSSSS----------HHHHHHHHHHHHTSSSEEEEEEEGGGH--HHHHHHHHHHHHTTSSEEEEEET
T ss_pred ceEEEEECCCcccCCCCC----------cHHHHHHHHHhhcCCCEEEEECCCCCH--HHHHHHHHHHHHcCCCEEEEEeC
Confidence 467899999997643211 11356677774 444466666666433 34567888887889999999999
Q ss_pred CCcccc
Q 004351 211 LDTKIP 216 (759)
Q Consensus 211 ~D~~~~ 216 (759)
+|....
T Consensus 115 ~D~a~~ 120 (156)
T PF02421_consen 115 MDEAER 120 (156)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999743
No 10
>COG3596 Predicted GTPase [General function prediction only]
Probab=98.86 E-value=3.4e-08 Score=103.73 Aligned_cols=77 Identities=25% Similarity=0.268 Sum_probs=56.9
Q ss_pred CCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHHHHHhCcC--CCeEEEEe
Q 004351 131 CPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPE--LKRTIIVS 208 (759)
Q Consensus 131 ~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~--g~RTIgVl 208 (759)
..+|+|.|+||+.....++ ...+.++.+|+...+ ++|++.++.|-+-+.+.++++.+--. +.|+|+|+
T Consensus 86 ~~~l~lwDtPG~gdg~~~D---------~~~r~~~~d~l~~~D-LvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~V 155 (296)
T COG3596 86 GENLVLWDTPGLGDGKDKD---------AEHRQLYRDYLPKLD-LVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVV 155 (296)
T ss_pred ccceEEecCCCcccchhhh---------HHHHHHHHHHhhhcc-EEEEeccCCCccccCCHHHHHHHHHhccCceeEEEE
Confidence 3689999999998764332 346788999997777 88888877666666666666655322 27999999
Q ss_pred cCCCccccc
Q 004351 209 TKLDTKIPQ 217 (759)
Q Consensus 209 TK~D~~~~~ 217 (759)
|..|+..|.
T Consensus 156 tQ~D~a~p~ 164 (296)
T COG3596 156 TQADRAEPG 164 (296)
T ss_pred ehhhhhccc
Confidence 999998664
No 11
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=98.85 E-value=3.2e-08 Score=98.47 Aligned_cols=77 Identities=17% Similarity=0.175 Sum_probs=50.8
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCcc--ceeEeecccCCcCcHHHHHHHHHhCcCCCeEEEEecC
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHRE--FIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTK 210 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~--~IIL~V~~~~D~~~~~~l~lar~~Dp~g~RTIgVlTK 210 (759)
++.|+||||+...... +.....+..++..|++... ..++.|.+++.-.......+.+.++..+.+.++|+||
T Consensus 65 ~~~liDtpG~~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK 138 (179)
T TIGR03598 65 GFRLVDLPGYGYAKVS------KEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTK 138 (179)
T ss_pred cEEEEeCCCCccccCC------hhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEC
Confidence 6899999998664321 1224567788888987543 2344444543323344455666667778899999999
Q ss_pred CCccc
Q 004351 211 LDTKI 215 (759)
Q Consensus 211 ~D~~~ 215 (759)
+|+..
T Consensus 139 ~D~~~ 143 (179)
T TIGR03598 139 ADKLK 143 (179)
T ss_pred cccCC
Confidence 99863
No 12
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.85 E-value=2.6e-08 Score=99.65 Aligned_cols=78 Identities=18% Similarity=0.212 Sum_probs=49.5
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccce--eEeecccCCcCcHHHHHHHHHhCcCCCeEEEEec
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFI--ILCLEDCSDWSNATTRRVVMQIDPELKRTIIVST 209 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~I--IL~V~~~~D~~~~~~l~lar~~Dp~g~RTIgVlT 209 (759)
.++.|+||||+..... + .........++..|++..+.+ ++.|.+..+........+.+.++..+...+.|+|
T Consensus 70 ~~l~l~DtpG~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~n 143 (196)
T PRK00454 70 DKLRLVDLPGYGYAKV---S---KEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLT 143 (196)
T ss_pred CeEEEeCCCCCCCcCC---C---chHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEE
Confidence 5799999999865321 1 122355678888999877653 3333444332333333444555556778999999
Q ss_pred CCCccc
Q 004351 210 KLDTKI 215 (759)
Q Consensus 210 K~D~~~ 215 (759)
|+|+..
T Consensus 144 K~Dl~~ 149 (196)
T PRK00454 144 KADKLK 149 (196)
T ss_pred CcccCC
Confidence 999963
No 13
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.84 E-value=2.5e-08 Score=105.37 Aligned_cols=131 Identities=21% Similarity=0.259 Sum_probs=76.0
Q ss_pred CCCCCEEEEEeccCCchHHHHHHHhCCccceecCc-cccccceEEEEeeCCCCCCCceEEecCCCCCCcccccChHHHHH
Q 004351 21 PFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGG-TKTRRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEIQS 99 (759)
Q Consensus 21 ~i~lPqIVVVG~QSsGKSSLLEAL~G~~fp~~g~g-~cTR~P~~l~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~l~~ 99 (759)
.-.-..|+|+|..|+|||||+|+|+|.....++.. .+|+.+.
T Consensus 28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~------------------------------------- 70 (249)
T cd01853 28 LDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVR------------------------------------- 70 (249)
T ss_pred ccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEE-------------------------------------
Confidence 44556999999999999999999999875433211 1111100
Q ss_pred HHHHHHhhhhhccCCCccccceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCc-cceeEe
Q 004351 100 FIEAENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHR-EFIILC 178 (759)
Q Consensus 100 ~Ie~~~~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~-~~IIL~ 178 (759)
..... .+...++||||||+.....+. ...+.+.+.+.+|++.. -.+||+
T Consensus 71 -----------------------~~~~~-~~g~~i~vIDTPGl~~~~~~~------~~~~~~~~~I~~~l~~~~idvIL~ 120 (249)
T cd01853 71 -----------------------EVSGT-VDGFKLNIIDTPGLLESVMDQ------RVNRKILSSIKRYLKKKTPDVVLY 120 (249)
T ss_pred -----------------------EEEEE-ECCeEEEEEECCCcCcchhhH------HHHHHHHHHHHHHHhccCCCEEEE
Confidence 00000 123468999999997653211 11234556778898732 335555
Q ss_pred ec--ccCCcCcH--HHHHHHHH-hCcC-CCeEEEEecCCCcccccc
Q 004351 179 LE--DCSDWSNA--TTRRVVMQ-IDPE-LKRTIIVSTKLDTKIPQF 218 (759)
Q Consensus 179 V~--~~~D~~~~--~~l~lar~-~Dp~-g~RTIgVlTK~D~~~~~~ 218 (759)
|. +....... ..++..++ +.+. -.++|.|+||.|...|+.
T Consensus 121 V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~~ 166 (249)
T cd01853 121 VDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPDG 166 (249)
T ss_pred EEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCCC
Confidence 53 33222222 33333333 2211 157999999999987763
No 14
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.82 E-value=3.6e-08 Score=106.46 Aligned_cols=138 Identities=20% Similarity=0.281 Sum_probs=80.3
Q ss_pred CCCCCCEEEEEeccCCchHHHHHHHhCCccceecC-ccccccceEEEEeeCCCCCCCceEEecCCCCCCcccccChHHHH
Q 004351 20 TPFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGG-GTKTRRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEIQ 98 (759)
Q Consensus 20 ~~i~lPqIVVVG~QSsGKSSLLEAL~G~~fp~~g~-g~cTR~P~~l~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~l~ 98 (759)
...+.+.|+|+|..|+||||++|+|+|.....++. ..+|..|+.
T Consensus 34 ~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~----------------------------------- 78 (313)
T TIGR00991 34 EDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMM----------------------------------- 78 (313)
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEE-----------------------------------
Confidence 35778899999999999999999999988642210 001111100
Q ss_pred HHHHHHHhhhhhccCCCccccceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcC--cccee
Q 004351 99 SFIEAENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQH--REFII 176 (759)
Q Consensus 99 ~~Ie~~~~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~--~~~II 176 (759)
....+ +...+++|||||+.... ..-+.+.+.++.|+.. ++.++
T Consensus 79 -----------------------~~~~~---~G~~l~VIDTPGL~d~~---------~~~e~~~~~ik~~l~~~g~DvVL 123 (313)
T TIGR00991 79 -----------------------VSRTR---AGFTLNIIDTPGLIEGG---------YINDQAVNIIKRFLLGKTIDVLL 123 (313)
T ss_pred -----------------------EEEEE---CCeEEEEEECCCCCchH---------HHHHHHHHHHHHHhhcCCCCEEE
Confidence 00001 23468999999998641 1123345677777753 44444
Q ss_pred Eee-cccCCc--CcHHHHHHHHHh--CcCCCeEEEEecCCCcccccccChhhHHHhhCC
Q 004351 177 LCL-EDCSDW--SNATTRRVVMQI--DPELKRTIIVSTKLDTKIPQFARASDVEVFLSP 230 (759)
Q Consensus 177 L~V-~~~~D~--~~~~~l~lar~~--Dp~g~RTIgVlTK~D~~~~~~~~~~~~~~~L~~ 230 (759)
++. .+.... .....++..+.+ +.--.++|.|+|+.|...|+ +.+.+.|+..
T Consensus 124 yV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd---~~~~e~fv~~ 179 (313)
T TIGR00991 124 YVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPD---GLEYNDFFSK 179 (313)
T ss_pred EEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCC---CCCHHHHHHh
Confidence 443 233222 223345544443 11226899999999987553 3456666644
No 15
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.81 E-value=2e-08 Score=96.15 Aligned_cols=78 Identities=15% Similarity=0.187 Sum_probs=51.9
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccce--eEeecccCCcCcHHHHHHHHHhCcCCCeEEEEecC
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFI--ILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTK 210 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~I--IL~V~~~~D~~~~~~l~lar~~Dp~g~RTIgVlTK 210 (759)
.++++|+||+....... .....+..++..|+...+.+ ++.|.+.....+....++.+.++..+...+.|+||
T Consensus 46 ~~~~~D~~g~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK 119 (170)
T cd01876 46 KFRLVDLPGYGYAKVSK------EVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTK 119 (170)
T ss_pred eEEEecCCCccccccCH------HHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEc
Confidence 89999999997653311 12345667888899876554 33444443333444455666666667789999999
Q ss_pred CCcccc
Q 004351 211 LDTKIP 216 (759)
Q Consensus 211 ~D~~~~ 216 (759)
+|+..+
T Consensus 120 ~D~~~~ 125 (170)
T cd01876 120 ADKLKK 125 (170)
T ss_pred hhcCCh
Confidence 999644
No 16
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=98.77 E-value=9.5e-08 Score=105.77 Aligned_cols=124 Identities=23% Similarity=0.321 Sum_probs=75.5
Q ss_pred CCCCEEEEEeccCCchHHHHHHHhCCccceecCccccccceEEEEeeCCCCCCCceEEecCCCCCCcccccChHHHHHHH
Q 004351 22 FDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEIQSFI 101 (759)
Q Consensus 22 i~lPqIVVVG~QSsGKSSLLEAL~G~~fp~~g~g~cTR~P~~l~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~l~~~I 101 (759)
-..|.|++||..++|||||+|+|+|..+...+.-..|+-|
T Consensus 187 ~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~---------------------------------------- 226 (351)
T TIGR03156 187 ADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDP---------------------------------------- 226 (351)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCC----------------------------------------
Confidence 3679999999999999999999999764322111112111
Q ss_pred HHHHhhhhhccCCCccccceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecc
Q 004351 102 EAENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLED 181 (759)
Q Consensus 102 e~~~~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~ 181 (759)
..-.+..|+...+.|+||||+++.-+ . ..++.++.. .+++.+.+.|++ |.+
T Consensus 227 --------------------~~~~i~~~~~~~i~l~DT~G~~~~l~----~---~lie~f~~t-le~~~~ADlil~-VvD 277 (351)
T TIGR03156 227 --------------------TTRRLDLPDGGEVLLTDTVGFIRDLP----H---ELVAAFRAT-LEEVREADLLLH-VVD 277 (351)
T ss_pred --------------------EEEEEEeCCCceEEEEecCcccccCC----H---HHHHHHHHH-HHHHHhCCEEEE-EEE
Confidence 11122333345789999999965321 1 112334443 345667775554 544
Q ss_pred cCCcCcHH----HHHHHHHhCcCCCeEEEEecCCCcc
Q 004351 182 CSDWSNAT----TRRVVMQIDPELKRTIIVSTKLDTK 214 (759)
Q Consensus 182 ~~D~~~~~----~l~lar~~Dp~g~RTIgVlTK~D~~ 214 (759)
+++....+ +..+.+++.-.+...|.|+||.|+.
T Consensus 278 ~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~ 314 (351)
T TIGR03156 278 ASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLL 314 (351)
T ss_pred CCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCC
Confidence 43332222 2356666655567899999999985
No 17
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=98.77 E-value=5.1e-08 Score=94.48 Aligned_cols=26 Identities=31% Similarity=0.572 Sum_probs=24.3
Q ss_pred CEEEEEeccCCchHHHHHHHhCCccc
Q 004351 25 PAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
|.|+|+|..++|||||+++|++-.+.
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~ 26 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVA 26 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccc
Confidence 78999999999999999999988775
No 18
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=98.76 E-value=6e-08 Score=98.16 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=22.4
Q ss_pred EEEEEeccCCchHHHHHHHhCCcc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQF 49 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~f 49 (759)
+|++||..++|||||+|+|+|...
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~ 25 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREV 25 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCc
Confidence 699999999999999999999874
No 19
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.75 E-value=8.9e-08 Score=91.30 Aligned_cols=74 Identities=12% Similarity=0.274 Sum_probs=46.7
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHHHHHhCcCCCeEEEEecCC
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKL 211 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~RTIgVlTK~ 211 (759)
..+.++|+||+...... ....+..+...++...+.+++++... +...+....+.+.+...+...++|+||.
T Consensus 51 ~~~~liDtpG~~~~~~~--------~~~~~~~~~~~~~~~~d~i~~v~d~~-~~~~~~~~~~~~~~~~~~~~~iiv~nK~ 121 (168)
T cd04163 51 AQIIFVDTPGIHKPKKK--------LGERMVKAAWSALKDVDLVLFVVDAS-EPIGEGDEFILELLKKSKTPVILVLNKI 121 (168)
T ss_pred eEEEEEECCCCCcchHH--------HHHHHHHHHHHHHHhCCEEEEEEECC-CccCchHHHHHHHHHHhCCCEEEEEEch
Confidence 46889999999764321 11224456677787888776665433 2223333344444444467799999999
Q ss_pred Ccc
Q 004351 212 DTK 214 (759)
Q Consensus 212 D~~ 214 (759)
|+.
T Consensus 122 Dl~ 124 (168)
T cd04163 122 DLV 124 (168)
T ss_pred hcc
Confidence 986
No 20
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.73 E-value=5.3e-08 Score=98.87 Aligned_cols=26 Identities=31% Similarity=0.498 Sum_probs=24.0
Q ss_pred CEEEEEeccCCchHHHHHHHhCCccc
Q 004351 25 PAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
..|+++|+.++|||||+|+|+|..++
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~ 27 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHE 27 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCC
Confidence 46999999999999999999998876
No 21
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=98.73 E-value=2.3e-07 Score=93.87 Aligned_cols=125 Identities=24% Similarity=0.302 Sum_probs=73.0
Q ss_pred CCCCEEEEEeccCCchHHHHHHHhCCccceecCccccccceEEEEeeCCCCCCCceEEecCCCCCCcccccChHHHHHHH
Q 004351 22 FDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEIQSFI 101 (759)
Q Consensus 22 i~lPqIVVVG~QSsGKSSLLEAL~G~~fp~~g~g~cTR~P~~l~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~l~~~I 101 (759)
-..|.|+|+|..++||||||++|+|-.+...+....|.-|
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~---------------------------------------- 78 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDP---------------------------------------- 78 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccc----------------------------------------
Confidence 4579999999999999999999999875422111111000
Q ss_pred HHHHhhhhhccCCCccccceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecc
Q 004351 102 EAENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLED 181 (759)
Q Consensus 102 e~~~~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~ 181 (759)
....+..++...++|+||||+..... .........+. .++.+.+.+++++ +
T Consensus 79 --------------------~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~~~-~~~~~~d~ii~v~-D 129 (204)
T cd01878 79 --------------------TTRRLRLPDGREVLLTDTVGFIRDLP-------HQLVEAFRSTL-EEVAEADLLLHVV-D 129 (204)
T ss_pred --------------------eeEEEEecCCceEEEeCCCccccCCC-------HHHHHHHHHHH-HHHhcCCeEEEEE-E
Confidence 00111122223688999999964321 11122233333 3345566555554 4
Q ss_pred cCCcCc----HHHHHHHHHhCcCCCeEEEEecCCCccc
Q 004351 182 CSDWSN----ATTRRVVMQIDPELKRTIIVSTKLDTKI 215 (759)
Q Consensus 182 ~~D~~~----~~~l~lar~~Dp~g~RTIgVlTK~D~~~ 215 (759)
+++... ..+.++.+.+...+.+.|+|+||.|+..
T Consensus 130 ~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~ 167 (204)
T cd01878 130 ASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLD 167 (204)
T ss_pred CCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCC
Confidence 332222 2234566666656678999999999953
No 22
>PRK00089 era GTPase Era; Reviewed
Probab=98.71 E-value=1.4e-07 Score=101.34 Aligned_cols=74 Identities=15% Similarity=0.325 Sum_probs=46.4
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHHHHHhCcCCCeEEEEecCC
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKL 211 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~RTIgVlTK~ 211 (759)
..++||||||+..... .........+..++...+.+++++.....+ ......+++.+...+.+.+.|+||.
T Consensus 53 ~qi~~iDTPG~~~~~~--------~l~~~~~~~~~~~~~~~D~il~vvd~~~~~-~~~~~~i~~~l~~~~~pvilVlNKi 123 (292)
T PRK00089 53 AQIIFVDTPGIHKPKR--------ALNRAMNKAAWSSLKDVDLVLFVVDADEKI-GPGDEFILEKLKKVKTPVILVLNKI 123 (292)
T ss_pred ceEEEEECCCCCCchh--------HHHHHHHHHHHHHHhcCCEEEEEEeCCCCC-ChhHHHHHHHHhhcCCCEEEEEECC
Confidence 4689999999975431 111223455666777888777665433322 3334445555544467899999999
Q ss_pred Ccc
Q 004351 212 DTK 214 (759)
Q Consensus 212 D~~ 214 (759)
|+.
T Consensus 124 Dl~ 126 (292)
T PRK00089 124 DLV 126 (292)
T ss_pred cCC
Confidence 996
No 23
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=98.68 E-value=1.6e-07 Score=100.14 Aligned_cols=72 Identities=21% Similarity=0.418 Sum_probs=43.5
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHHHHHhCcCCCeEEEEecCCC
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKLD 212 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~RTIgVlTK~D 212 (759)
.+.|+||||+..... .......+.+..++...+.+++++ ++++..... ..+...+...+..+|.|+||.|
T Consensus 49 qii~vDTPG~~~~~~--------~l~~~~~~~~~~~l~~aDvvl~Vv-D~~~~~~~~-~~i~~~l~~~~~p~ilV~NK~D 118 (270)
T TIGR00436 49 QIIFIDTPGFHEKKH--------SLNRLMMKEARSAIGGVDLILFVV-DSDQWNGDG-EFVLTKLQNLKRPVVLTRNKLD 118 (270)
T ss_pred EEEEEECcCCCCCcc--------hHHHHHHHHHHHHHhhCCEEEEEE-ECCCCCchH-HHHHHHHHhcCCCEEEEEECee
Confidence 478999999976421 011223344567787777666655 443333322 3333444445678999999999
Q ss_pred cc
Q 004351 213 TK 214 (759)
Q Consensus 213 ~~ 214 (759)
+.
T Consensus 119 l~ 120 (270)
T TIGR00436 119 NK 120 (270)
T ss_pred CC
Confidence 96
No 24
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=98.66 E-value=2e-07 Score=87.39 Aligned_cols=76 Identities=18% Similarity=0.288 Sum_probs=48.0
Q ss_pred CCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHHHHHhCcCCCeEEEEecC
Q 004351 131 CPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTK 210 (759)
Q Consensus 131 ~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~RTIgVlTK 210 (759)
..+++|+|+||+....... .....+...++...+.+++++.... ........+.......+...+.|+||
T Consensus 44 ~~~~~~~Dt~g~~~~~~~~---------~~~~~~~~~~~~~~d~il~v~~~~~-~~~~~~~~~~~~~~~~~~~~ivv~nK 113 (163)
T cd00880 44 LGPVVLIDTPGIDEAGGLG---------REREELARRVLERADLILFVVDADL-RADEEEEKLLELLRERGKPVLLVLNK 113 (163)
T ss_pred CCcEEEEECCCCCccccch---------hhHHHHHHHHHHhCCEEEEEEeCCC-CCCHHHHHHHHHHHhcCCeEEEEEEc
Confidence 5789999999997654211 1112456677778887776664432 22322222344444457789999999
Q ss_pred CCcccc
Q 004351 211 LDTKIP 216 (759)
Q Consensus 211 ~D~~~~ 216 (759)
.|+..+
T Consensus 114 ~D~~~~ 119 (163)
T cd00880 114 IDLLPE 119 (163)
T ss_pred cccCCh
Confidence 999744
No 25
>COG1160 Predicted GTPases [General function prediction only]
Probab=98.64 E-value=3.2e-07 Score=102.44 Aligned_cols=122 Identities=20% Similarity=0.281 Sum_probs=84.0
Q ss_pred CEEEEEeccCCchHHHHHHHhCCccceecCccccccceEEEEeeCCCCCCCceEEecCCCCCCcccccChHHHHHHHHHH
Q 004351 25 PAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEIQSFIEAE 104 (759)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~~fp~~g~g~cTR~P~~l~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~l~~~Ie~~ 104 (759)
|.|++||..+.|||||.|.|+|.+..-+..-
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~------------------------------------------------- 34 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDT------------------------------------------------- 34 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecC-------------------------------------------------
Confidence 8999999999999999999999887544210
Q ss_pred HhhhhhccCCCccccceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCC
Q 004351 105 NMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSD 184 (759)
Q Consensus 105 ~~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D 184 (759)
.+.+.|.++=..+.-+. .+.+|||+|+..... +.....+...+..-|...+.||+ |+++..
T Consensus 35 ----------pGvTRDr~y~~~~~~~~-~f~lIDTgGl~~~~~-------~~l~~~i~~Qa~~Ai~eADvilf-vVD~~~ 95 (444)
T COG1160 35 ----------PGVTRDRIYGDAEWLGR-EFILIDTGGLDDGDE-------DELQELIREQALIAIEEADVILF-VVDGRE 95 (444)
T ss_pred ----------CCCccCCccceeEEcCc-eEEEEECCCCCcCCc-------hHHHHHHHHHHHHHHHhCCEEEE-EEeCCC
Confidence 01222222222222222 389999999986432 12235566666777777775554 555555
Q ss_pred cCcHHHHHHHHHhCcCCCeEEEEecCCCcc
Q 004351 185 WSNATTRRVVMQIDPELKRTIIVSTKLDTK 214 (759)
Q Consensus 185 ~~~~~~l~lar~~Dp~g~RTIgVlTK~D~~ 214 (759)
-.+..+..+|+.+-+....+|.|+||+|..
T Consensus 96 Git~~D~~ia~~Lr~~~kpviLvvNK~D~~ 125 (444)
T COG1160 96 GITPADEEIAKILRRSKKPVILVVNKIDNL 125 (444)
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEEcccCc
Confidence 567777888888888789999999999986
No 26
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=98.64 E-value=2.5e-07 Score=89.90 Aligned_cols=26 Identities=31% Similarity=0.469 Sum_probs=24.0
Q ss_pred CEEEEEeccCCchHHHHHHHhCCccc
Q 004351 25 PAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
|.|+++|.+++|||||+++|+|..+.
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~ 26 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPE 26 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCc
Confidence 78999999999999999999997764
No 27
>PRK11058 GTPase HflX; Provisional
Probab=98.64 E-value=3.8e-07 Score=103.41 Aligned_cols=124 Identities=21% Similarity=0.277 Sum_probs=73.7
Q ss_pred CCCCEEEEEeccCCchHHHHHHHhCCccceecCccccccceEEEEeeCCCCCCCceEEecCCCCCCcccccChHHHHHHH
Q 004351 22 FDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEIQSFI 101 (759)
Q Consensus 22 i~lPqIVVVG~QSsGKSSLLEAL~G~~fp~~g~g~cTR~P~~l~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~l~~~I 101 (759)
-.+|.|++||.+++|||||+|+|+|-.+...+.-..|+-|+
T Consensus 195 ~~~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~--------------------------------------- 235 (426)
T PRK11058 195 ADVPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPT--------------------------------------- 235 (426)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCc---------------------------------------
Confidence 46799999999999999999999997765211101111111
Q ss_pred HHHHhhhhhccCCCccccceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecc
Q 004351 102 EAENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLED 181 (759)
Q Consensus 102 e~~~~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~ 181 (759)
.-.+..++.....|+||||+.+.. +. ..++.+... ..++.+.+.+| +|.+
T Consensus 236 ---------------------~~~i~l~~~~~~~l~DTaG~~r~l----p~---~lve~f~~t-l~~~~~ADlIL-~VvD 285 (426)
T PRK11058 236 ---------------------LRRIDVADVGETVLADTVGFIRHL----PH---DLVAAFKAT-LQETRQATLLL-HVVD 285 (426)
T ss_pred ---------------------eEEEEeCCCCeEEEEecCcccccC----CH---HHHHHHHHH-HHHhhcCCEEE-EEEe
Confidence 001111222246799999996531 11 112333343 34566666555 4554
Q ss_pred cCCcCcHH----HHHHHHHhCcCCCeEEEEecCCCcc
Q 004351 182 CSDWSNAT----TRRVVMQIDPELKRTIIVSTKLDTK 214 (759)
Q Consensus 182 ~~D~~~~~----~l~lar~~Dp~g~RTIgVlTK~D~~ 214 (759)
+++..... +.++.+++...+.+.|.|+||+|+.
T Consensus 286 aS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~ 322 (426)
T PRK11058 286 AADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDML 322 (426)
T ss_pred CCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCC
Confidence 44333222 2355677765678899999999985
No 28
>PRK04213 GTP-binding protein; Provisional
Probab=98.63 E-value=2.7e-07 Score=93.06 Aligned_cols=30 Identities=37% Similarity=0.583 Sum_probs=26.2
Q ss_pred CCCCCEEEEEeccCCchHHHHHHHhCCccc
Q 004351 21 PFDAPAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 21 ~i~lPqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
+-..|.|+++|..++|||||+++|+|..++
T Consensus 6 ~~~~~~i~i~G~~~~GKSsLin~l~~~~~~ 35 (201)
T PRK04213 6 PDRKPEIVFVGRSNVGKSTLVRELTGKKVR 35 (201)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCc
Confidence 345689999999999999999999987764
No 29
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=98.61 E-value=2.1e-07 Score=91.58 Aligned_cols=68 Identities=21% Similarity=0.162 Sum_probs=43.9
Q ss_pred CCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHHHHHhCcCCCeEEEEecC
Q 004351 131 CPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTK 210 (759)
Q Consensus 131 ~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~RTIgVlTK 210 (759)
...++||||||... ...+...|++..+.+++++. +.+.......++...+.-.+...++|+||
T Consensus 61 ~~~~~liDtpG~~~----------------~~~~~~~~~~~~d~~i~v~d-~~~~~~~~~~~~~~~~~~~~~~i~iv~nK 123 (189)
T cd00881 61 DRRVNFIDTPGHED----------------FSSEVIRGLSVSDGAILVVD-ANEGVQPQTREHLRIAREGGLPIIVAINK 123 (189)
T ss_pred CEEEEEEeCCCcHH----------------HHHHHHHHHHhcCEEEEEEE-CCCCCcHHHHHHHHHHHHCCCCeEEEEEC
Confidence 45799999999742 12455667777887776654 33222333334333333356789999999
Q ss_pred CCccc
Q 004351 211 LDTKI 215 (759)
Q Consensus 211 ~D~~~ 215 (759)
.|+..
T Consensus 124 ~D~~~ 128 (189)
T cd00881 124 IDRVG 128 (189)
T ss_pred CCCcc
Confidence 99974
No 30
>COG1084 Predicted GTPase [General function prediction only]
Probab=98.59 E-value=3.4e-07 Score=98.33 Aligned_cols=128 Identities=25% Similarity=0.277 Sum_probs=81.2
Q ss_pred CCCCCCEEEEEeccCCchHHHHHHHhCCccceecCccccccceEEEEeeCCCCCCCceEEecCCCCCCcccccChHHHHH
Q 004351 20 TPFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEIQS 99 (759)
Q Consensus 20 ~~i~lPqIVVVG~QSsGKSSLLEAL~G~~fp~~g~g~cTR~P~~l~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~l~~ 99 (759)
...++|.|||+|-.|+||||||.+|+|.+.- +.. .||..+
T Consensus 164 Idp~~pTivVaG~PNVGKSSlv~~lT~AkpE-vA~------------------------------YPFTTK--------- 203 (346)
T COG1084 164 IDPDLPTIVVAGYPNVGKSSLVRKLTTAKPE-VAP------------------------------YPFTTK--------- 203 (346)
T ss_pred CCCCCCeEEEecCCCCcHHHHHHHHhcCCCc-cCC------------------------------CCcccc---------
Confidence 4678999999999999999999999998732 210 111111
Q ss_pred HHHHHHhhhhhccCCCccccceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEee
Q 004351 100 FIEAENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCL 179 (759)
Q Consensus 100 ~Ie~~~~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V 179 (759)
-|.|--..-..-..-+|||||+-.-+..+ ...|+...-.-+++=..+||++
T Consensus 204 ---------------------~i~vGhfe~~~~R~QvIDTPGlLDRPl~E--------rN~IE~qAi~AL~hl~~~IlF~ 254 (346)
T COG1084 204 ---------------------GIHVGHFERGYLRIQVIDTPGLLDRPLEE--------RNEIERQAILALRHLAGVILFL 254 (346)
T ss_pred ---------------------ceeEeeeecCCceEEEecCCcccCCChHH--------hcHHHHHHHHHHHHhcCeEEEE
Confidence 11111111112345679999998765432 3445555555566667788888
Q ss_pred cccC---CcCcHHHHHHHHHhCcCCC-eEEEEecCCCcccc
Q 004351 180 EDCS---DWSNATTRRVVMQIDPELK-RTIIVSTKLDTKIP 216 (759)
Q Consensus 180 ~~~~---D~~~~~~l~lar~~Dp~g~-RTIgVlTK~D~~~~ 216 (759)
.|.+ -+.-..=..+.+++.+... +++.|+||.|...+
T Consensus 255 ~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~~ 295 (346)
T COG1084 255 FDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIADE 295 (346)
T ss_pred EcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEecccccch
Confidence 7543 2223333456666666555 79999999998743
No 31
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.58 E-value=1.5e-07 Score=96.91 Aligned_cols=132 Identities=21% Similarity=0.317 Sum_probs=71.0
Q ss_pred EEEEEeccCCchHHHHHHHhCCccceecC--ccccccceEEEEeeCCCCCCCceEEecCCCCCCcccccChHHHHHHHHH
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFNHVGG--GTKTRRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEIQSFIEA 103 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp~~g~--g~cTR~P~~l~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~l~~~Ie~ 103 (759)
+||++|..++||||++|+|+|....+.+. ..||+. |...
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~----------------~~~~----------------------- 42 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQE----------------CQKY----------------------- 42 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-----------------EEE-----------------------
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeeccccCCcccc----------------ccee-----------------------
Confidence 69999999999999999999999643321 111111 0000
Q ss_pred HHhhhhhccCCCccccceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccC
Q 004351 104 ENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCS 183 (759)
Q Consensus 104 ~~~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~ 183 (759)
.-++ +...+++|||||+...... + +.....+.+.+......++.++|++...
T Consensus 43 -------------------~~~~---~g~~v~VIDTPGl~d~~~~--~---~~~~~~i~~~l~~~~~g~ha~llVi~~~- 94 (212)
T PF04548_consen 43 -------------------SGEV---DGRQVTVIDTPGLFDSDGS--D---EEIIREIKRCLSLCSPGPHAFLLVIPLG- 94 (212)
T ss_dssp -------------------EEEE---TTEEEEEEE--SSEETTEE--H---HHHHHHHHHHHHHTTT-ESEEEEEEETT-
T ss_pred -------------------eeee---cceEEEEEeCCCCCCCccc--H---HHHHHHHHHHHHhccCCCeEEEEEEecC-
Confidence 0011 2256899999999765321 1 1122333333333344577777766544
Q ss_pred CcCcH--HHHHHHH-HhCc-CCCeEEEEecCCCcccccccChhhHHHhhC
Q 004351 184 DWSNA--TTRRVVM-QIDP-ELKRTIIVSTKLDTKIPQFARASDVEVFLS 229 (759)
Q Consensus 184 D~~~~--~~l~lar-~~Dp-~g~RTIgVlTK~D~~~~~~~~~~~~~~~L~ 229 (759)
.+... .+++..+ -+.+ --.+||.|+|..|...+. +.++|++
T Consensus 95 r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~-----~~~~~l~ 139 (212)
T PF04548_consen 95 RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELEDD-----SLEDYLK 139 (212)
T ss_dssp B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTT-----THHHHHH
T ss_pred cchHHHHHHHHHHHHHccHHHHhHhhHHhhhccccccc-----cHHHHHh
Confidence 45433 3444444 3443 236899999999986432 2555554
No 32
>PRK03003 GTP-binding protein Der; Reviewed
Probab=98.58 E-value=4.6e-07 Score=104.14 Aligned_cols=124 Identities=23% Similarity=0.305 Sum_probs=78.1
Q ss_pred CCCCEEEEEeccCCchHHHHHHHhCCccceecCccccccceEEEEeeCCCCCCCceEEecCCCCCCcccccChHHHHHHH
Q 004351 22 FDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEIQSFI 101 (759)
Q Consensus 22 i~lPqIVVVG~QSsGKSSLLEAL~G~~fp~~g~g~cTR~P~~l~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~l~~~I 101 (759)
-..|.|++||..++|||||+++|+|..+..++. .+
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~--------------~~------------------------------- 70 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGRREAVVED--------------VP------------------------------- 70 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCcCcccccC--------------CC-------------------------------
Confidence 467999999999999999999999866431110 00
Q ss_pred HHHHhhhhhccCCCccccceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecc
Q 004351 102 EAENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLED 181 (759)
Q Consensus 102 e~~~~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~ 181 (759)
+.+.+.+...+...+ ..+.|+||||+..... .....+...+..|++..+.||++|-
T Consensus 71 --------------gvT~d~~~~~~~~~~-~~~~l~DT~G~~~~~~--------~~~~~~~~~~~~~~~~aD~il~VvD- 126 (472)
T PRK03003 71 --------------GVTRDRVSYDAEWNG-RRFTVVDTGGWEPDAK--------GLQASVAEQAEVAMRTADAVLFVVD- 126 (472)
T ss_pred --------------CCCEeeEEEEEEECC-cEEEEEeCCCcCCcch--------hHHHHHHHHHHHHHHhCCEEEEEEE-
Confidence 011111122222222 2478999999864221 1224566778889988887766654
Q ss_pred cCCcCcHHHHHHHHHhCcCCCeEEEEecCCCcc
Q 004351 182 CSDWSNATTRRVVMQIDPELKRTIIVSTKLDTK 214 (759)
Q Consensus 182 ~~D~~~~~~l~lar~~Dp~g~RTIgVlTK~D~~ 214 (759)
+++..+.....++..+...+...|.|+||+|+.
T Consensus 127 ~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~ 159 (472)
T PRK03003 127 ATVGATATDEAVARVLRRSGKPVILAANKVDDE 159 (472)
T ss_pred CCCCCCHHHHHHHHHHHHcCCCEEEEEECccCC
Confidence 332233334455555555678999999999984
No 33
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=98.54 E-value=6.6e-07 Score=101.20 Aligned_cols=74 Identities=16% Similarity=0.285 Sum_probs=50.8
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHHHHHhCcCCCeEEEEecCCC
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKLD 212 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~RTIgVlTK~D 212 (759)
.++||||||+.... ......+.+++..+++..+.++++| ++.+..+.....+++.+...+...|.|+||+|
T Consensus 48 ~~~liDTpG~~~~~--------~~~~~~~~~~~~~~~~~ad~vl~vv-D~~~~~~~~d~~i~~~l~~~~~piilVvNK~D 118 (429)
T TIGR03594 48 EFILIDTGGIEEDD--------DGLDKQIREQAEIAIEEADVILFVV-DGREGLTPEDEEIAKWLRKSGKPVILVANKID 118 (429)
T ss_pred EEEEEECCCCCCcc--------hhHHHHHHHHHHHHHhhCCEEEEEE-eCCCCCCHHHHHHHHHHHHhCCCEEEEEECcc
Confidence 48999999985321 1123556788888998888665555 44444455555666666556788999999999
Q ss_pred ccc
Q 004351 213 TKI 215 (759)
Q Consensus 213 ~~~ 215 (759)
+..
T Consensus 119 ~~~ 121 (429)
T TIGR03594 119 GKK 121 (429)
T ss_pred CCc
Confidence 863
No 34
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=98.53 E-value=1.1e-06 Score=94.27 Aligned_cols=26 Identities=27% Similarity=0.477 Sum_probs=24.0
Q ss_pred EEEEEeccCCchHHHHHHHhCCccce
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFNH 51 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp~ 51 (759)
.|+|||+.|+|||||+|+|.|-.+.+
T Consensus 6 ~I~vvG~sg~GKSTliN~L~~~~~~~ 31 (276)
T cd01850 6 NIMVVGESGLGKSTFINTLFNTKLIP 31 (276)
T ss_pred EEEEEcCCCCCHHHHHHHHHcCCCcc
Confidence 69999999999999999999988764
No 35
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.53 E-value=5.8e-07 Score=85.63 Aligned_cols=75 Identities=13% Similarity=0.245 Sum_probs=43.8
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHHHHHhCcCCCeEEEEecCC
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKL 211 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~RTIgVlTK~ 211 (759)
..+.++||||+..... .....+......++...+.+++++.... ..+.....+.+.+...+...|+|+||+
T Consensus 45 ~~~~i~DtpG~~~~~~--------~~~~~~~~~~~~~~~~~d~ii~v~d~~~-~~~~~~~~~~~~~~~~~~piiiv~nK~ 115 (157)
T cd01894 45 REFILIDTGGIEPDDE--------GISKEIREQAELAIEEADVILFVVDGRE-GLTPADEEIAKYLRKSKKPVILVVNKV 115 (157)
T ss_pred eEEEEEECCCCCCchh--------HHHHHHHHHHHHHHHhCCEEEEEEeccc-cCCccHHHHHHHHHhcCCCEEEEEECc
Confidence 4688999999976421 0112233445566777776665554322 122222333343433468899999999
Q ss_pred Cccc
Q 004351 212 DTKI 215 (759)
Q Consensus 212 D~~~ 215 (759)
|+..
T Consensus 116 D~~~ 119 (157)
T cd01894 116 DNIK 119 (157)
T ss_pred ccCC
Confidence 9964
No 36
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=98.51 E-value=1.5e-06 Score=82.68 Aligned_cols=73 Identities=18% Similarity=0.261 Sum_probs=42.9
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHHHHHhCcCCCeEEEEecCC
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKL 211 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~RTIgVlTK~ 211 (759)
..++++||||+...... .+ ...-..+..++.+.+.+++++ ++++.......++... ..+.+.|.|+||.
T Consensus 49 ~~~~i~DtpG~~~~~~~-----~~---~~~~~~~~~~~~~~~~~v~v~-d~~~~~~~~~~~~~~~--~~~~~vi~v~nK~ 117 (157)
T cd04164 49 IPVRLIDTAGIRETEDE-----IE---KIGIERAREAIEEADLVLFVI-DASRGLDEEDLEILEL--PADKPIIVVLNKS 117 (157)
T ss_pred EEEEEEECCCcCCCcch-----HH---HHHHHHHHHHHhhCCEEEEEE-ECCCCCCHHHHHHHHh--hcCCCEEEEEEch
Confidence 46899999998654311 11 111134445566666555544 4433334444444444 3467899999999
Q ss_pred Cccc
Q 004351 212 DTKI 215 (759)
Q Consensus 212 D~~~ 215 (759)
|+..
T Consensus 118 D~~~ 121 (157)
T cd04164 118 DLLP 121 (157)
T ss_pred hcCC
Confidence 9963
No 37
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.51 E-value=1.2e-06 Score=84.52 Aligned_cols=78 Identities=21% Similarity=0.247 Sum_probs=44.2
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHHHHHhCcCCCeEEEEecCC
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKL 211 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~RTIgVlTK~ 211 (759)
.++++||+||+........ .++. .. ... ...++...+.+++++ ++++..+.....+.+.+...+...+.|+||+
T Consensus 50 ~~~~iiDtpG~~~~~~~~~--~~e~-~~-~~~-~~~~~~~~d~vi~v~-d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~ 123 (174)
T cd01895 50 KKYTLIDTAGIRRKGKVEE--GIEK-YS-VLR-TLKAIERADVVLLVI-DATEGITEQDLRIAGLILEEGKALVIVVNKW 123 (174)
T ss_pred eeEEEEECCCCccccchhc--cHHH-HH-HHH-HHHHHhhcCeEEEEE-eCCCCcchhHHHHHHHHHhcCCCEEEEEecc
Confidence 3578999999976421110 0110 00 111 224455666666555 4433334445556666555578899999999
Q ss_pred Cccc
Q 004351 212 DTKI 215 (759)
Q Consensus 212 D~~~ 215 (759)
|+..
T Consensus 124 Dl~~ 127 (174)
T cd01895 124 DLVE 127 (174)
T ss_pred ccCC
Confidence 9864
No 38
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=98.51 E-value=8.6e-07 Score=85.26 Aligned_cols=65 Identities=20% Similarity=0.233 Sum_probs=39.2
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcH--HHHHHHHHhCcCCCeEEEEec
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNA--TTRRVVMQIDPELKRTIIVST 209 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~--~~l~lar~~Dp~g~RTIgVlT 209 (759)
..++++||||... ....+..|+...+.+++++....++..+ ..+.+++... ....|.|+|
T Consensus 51 ~~~~~~DtpG~~~----------------~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~--~~~~ilv~N 112 (164)
T cd04171 51 KRLGFIDVPGHEK----------------FIKNMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLG--IKRGLVVLT 112 (164)
T ss_pred cEEEEEECCChHH----------------HHHHHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhC--CCcEEEEEE
Confidence 4799999999621 1134456777788777665433333222 2233443332 137999999
Q ss_pred CCCcc
Q 004351 210 KLDTK 214 (759)
Q Consensus 210 K~D~~ 214 (759)
|.|+.
T Consensus 113 K~Dl~ 117 (164)
T cd04171 113 KADLV 117 (164)
T ss_pred Ccccc
Confidence 99985
No 39
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=98.50 E-value=5.1e-07 Score=87.76 Aligned_cols=24 Identities=33% Similarity=0.374 Sum_probs=21.6
Q ss_pred EEEEEeccCCchHHHHHHHhCCcc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQF 49 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~f 49 (759)
.|++||..++|||||+++|+|...
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~ 25 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKP 25 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCc
Confidence 489999999999999999998654
No 40
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.50 E-value=1.5e-06 Score=101.28 Aligned_cols=92 Identities=20% Similarity=0.308 Sum_probs=55.6
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcC--ccceeEeecc--c--CCcCcHHHHHHHHHhCc--CCCe
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQH--REFIILCLED--C--SDWSNATTRRVVMQIDP--ELKR 203 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~--~~~IIL~V~~--~--~D~~~~~~l~lar~~Dp--~g~R 203 (759)
..++||||||+....... .....+...+..|++. ++ ++|+|.. . .|.....+++..+++=. --.+
T Consensus 166 ~~L~VIDTPGL~dt~~dq------~~neeILk~Ik~~Lsk~gpD-VVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~ 238 (763)
T TIGR00993 166 VKIRVIDTPGLKSSASDQ------SKNEKILSSVKKFIKKNPPD-IVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFN 238 (763)
T ss_pred ceEEEEECCCCCccccch------HHHHHHHHHHHHHHhcCCCC-EEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcC
Confidence 458999999998753211 1234556667778773 54 5555532 2 24344445665544422 2268
Q ss_pred EEEEecCCCcccccccC--hhhHHHhhCC
Q 004351 204 TIIVSTKLDTKIPQFAR--ASDVEVFLSP 230 (759)
Q Consensus 204 TIgVlTK~D~~~~~~~~--~~~~~~~L~~ 230 (759)
||.|+|..|.+.|+..+ ....++|+..
T Consensus 239 tIVVFThgD~lppdg~ng~~~tye~fv~~ 267 (763)
T TIGR00993 239 AIVTLTHAASAPPDGPNGTPLSYDVFVAQ 267 (763)
T ss_pred EEEEEeCCccCCCCCCCCCCcCHHHHHhh
Confidence 99999999999765322 2456667654
No 41
>COG1159 Era GTPase [General function prediction only]
Probab=98.49 E-value=1.1e-06 Score=93.60 Aligned_cols=76 Identities=21% Similarity=0.458 Sum_probs=45.5
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCC-cCcHHHHHHHHHhCcCCCeEEEEecC
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSD-WSNATTRRVVMQIDPELKRTIIVSTK 210 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D-~~~~~~l~lar~~Dp~g~RTIgVlTK 210 (759)
....||||||+..... ..-+..-+.+.+-++.-+ +||+|+++.+ |.. .+..++..+.....+.|.++||
T Consensus 54 ~QiIfvDTPGih~pk~--------~l~~~m~~~a~~sl~dvD-lilfvvd~~~~~~~-~d~~il~~lk~~~~pvil~iNK 123 (298)
T COG1159 54 AQIIFVDTPGIHKPKH--------ALGELMNKAARSALKDVD-LILFVVDADEGWGP-GDEFILEQLKKTKTPVILVVNK 123 (298)
T ss_pred ceEEEEeCCCCCCcch--------HHHHHHHHHHHHHhccCc-EEEEEEeccccCCc-cHHHHHHHHhhcCCCeEEEEEc
Confidence 4688999999987521 111223344455555555 4555555433 333 3444444444455789999999
Q ss_pred CCccccc
Q 004351 211 LDTKIPQ 217 (759)
Q Consensus 211 ~D~~~~~ 217 (759)
.|+..+.
T Consensus 124 ID~~~~~ 130 (298)
T COG1159 124 IDKVKPK 130 (298)
T ss_pred cccCCcH
Confidence 9997543
No 42
>PRK00093 GTP-binding protein Der; Reviewed
Probab=98.48 E-value=1.1e-06 Score=99.82 Aligned_cols=125 Identities=18% Similarity=0.199 Sum_probs=75.1
Q ss_pred CCCEEEEEeccCCchHHHHHHHhCCccceecCccccccceEEEEeeCCCCCCCceEEecCCCCCCcccccChHHHHHHHH
Q 004351 23 DAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEIQSFIE 102 (759)
Q Consensus 23 ~lPqIVVVG~QSsGKSSLLEAL~G~~fp~~g~g~cTR~P~~l~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~l~~~Ie 102 (759)
+.+.|+|+|..++|||||+|+|+|.....++...
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~---------------------------------------------- 205 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIA---------------------------------------------- 205 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCC----------------------------------------------
Confidence 4578999999999999999999987632121000
Q ss_pred HHHhhhhhccCCCccccceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHH-HHHHHHhcCccceeEeecc
Q 004351 103 AENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVE-SLVRAKMQHREFIILCLED 181 (759)
Q Consensus 103 ~~~~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~-~lv~~Yi~~~~~IIL~V~~ 181 (759)
+.+.+.+...+.. +...++||||||+.....-. ...+... .-..++++..+.+|+++.
T Consensus 206 -------------gtt~~~~~~~~~~-~~~~~~lvDT~G~~~~~~~~------~~~e~~~~~~~~~~~~~ad~~ilViD- 264 (435)
T PRK00093 206 -------------GTTRDSIDTPFER-DGQKYTLIDTAGIRRKGKVT------EGVEKYSVIRTLKAIERADVVLLVID- 264 (435)
T ss_pred -------------CceEEEEEEEEEE-CCeeEEEEECCCCCCCcchh------hHHHHHHHHHHHHHHHHCCEEEEEEe-
Confidence 0001111122221 23457899999997643211 1111111 112356777776665554
Q ss_pred cCCcCcHHHHHHHHHhCcCCCeEEEEecCCCcc
Q 004351 182 CSDWSNATTRRVVMQIDPELKRTIIVSTKLDTK 214 (759)
Q Consensus 182 ~~D~~~~~~l~lar~~Dp~g~RTIgVlTK~D~~ 214 (759)
+.+..+.....+++.+...|...|.|+||+|+.
T Consensus 265 ~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~ 297 (435)
T PRK00093 265 ATEGITEQDLRIAGLALEAGRALVIVVNKWDLV 297 (435)
T ss_pred CCCCCCHHHHHHHHHHHHcCCcEEEEEECccCC
Confidence 433345556677777766788999999999986
No 43
>PRK00093 GTP-binding protein Der; Reviewed
Probab=98.48 E-value=1.3e-06 Score=99.17 Aligned_cols=74 Identities=14% Similarity=0.256 Sum_probs=48.6
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHHHHHhCcCCCeEEEEecCC
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKL 211 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~RTIgVlTK~ 211 (759)
..+.|+||||+.... ......+...+..++...+.+|++|.. .+..+.....+++.+...+...|.|+||+
T Consensus 49 ~~~~liDT~G~~~~~--------~~~~~~~~~~~~~~~~~ad~il~vvd~-~~~~~~~~~~~~~~l~~~~~piilv~NK~ 119 (435)
T PRK00093 49 REFILIDTGGIEPDD--------DGFEKQIREQAELAIEEADVILFVVDG-RAGLTPADEEIAKILRKSNKPVILVVNKV 119 (435)
T ss_pred cEEEEEECCCCCCcc--------hhHHHHHHHHHHHHHHhCCEEEEEEEC-CCCCCHHHHHHHHHHHHcCCcEEEEEECc
Confidence 468999999997621 112345667778888888877766643 33233333444444444578999999999
Q ss_pred Ccc
Q 004351 212 DTK 214 (759)
Q Consensus 212 D~~ 214 (759)
|..
T Consensus 120 D~~ 122 (435)
T PRK00093 120 DGP 122 (435)
T ss_pred cCc
Confidence 964
No 44
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=98.48 E-value=1.1e-06 Score=83.21 Aligned_cols=80 Identities=19% Similarity=0.190 Sum_probs=47.7
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCc----HHHHHHHHHhCcCCCeEEEE
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSN----ATTRRVVMQIDPELKRTIIV 207 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~----~~~l~lar~~Dp~g~RTIgV 207 (759)
.+++++|+||... ...+...++++.+.+|+++.... ..+ ..++.........+..++.|
T Consensus 49 ~~~~l~D~~g~~~----------------~~~~~~~~~~~~d~ii~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv 111 (159)
T cd00154 49 VKLQIWDTAGQER----------------FRSITPSYYRGAHGAILVYDITN-RESFENLDKWLKELKEYAPENIPIILV 111 (159)
T ss_pred EEEEEEecCChHH----------------HHHHHHHHhcCCCEEEEEEECCC-HHHHHHHHHHHHHHHHhCCCCCcEEEE
Confidence 3678999999721 23467788888887777665332 111 12333444443345789999
Q ss_pred ecCCCcccccccChhhHHHhh
Q 004351 208 STKLDTKIPQFARASDVEVFL 228 (759)
Q Consensus 208 lTK~D~~~~~~~~~~~~~~~L 228 (759)
+||.|+..+.........++.
T Consensus 112 ~nK~D~~~~~~~~~~~~~~~~ 132 (159)
T cd00154 112 GNKIDLEDQRQVSTEEAQQFA 132 (159)
T ss_pred EEcccccccccccHHHHHHHH
Confidence 999999623222234444443
No 45
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=98.45 E-value=1.1e-06 Score=98.68 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=22.9
Q ss_pred CCEEEEEeccCCchHHHHHHHhCCc
Q 004351 24 APAVLVVGHQTDGKSALVEALMGFQ 48 (759)
Q Consensus 24 lPqIVVVG~QSsGKSSLLEAL~G~~ 48 (759)
+..|++||..++|||||||+|++..
T Consensus 159 iadValVG~PNaGKSTLln~Lt~~k 183 (390)
T PRK12298 159 LADVGLLGLPNAGKSTFIRAVSAAK 183 (390)
T ss_pred cccEEEEcCCCCCHHHHHHHHhCCc
Confidence 3589999999999999999999876
No 46
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=98.43 E-value=2.1e-06 Score=97.99 Aligned_cols=71 Identities=18% Similarity=0.306 Sum_probs=42.1
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHH-HHHHHHHhcCccceeEeecccCCcCcHHHHHHHHHhCcCCCeEEEEecCC
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAV-ESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKL 211 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v-~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~RTIgVlTK~ 211 (759)
.+.|+||||+.... ...+.. -.....|++..+.+|+++...+. .+.+.. +...+...+...|.|+||.
T Consensus 252 ~v~l~DTaG~~~~~---------~~ie~~gi~~~~~~~~~aD~il~V~D~s~~-~s~~~~-~l~~~~~~~~piIlV~NK~ 320 (442)
T TIGR00450 252 LIKLLDTAGIREHA---------DFVERLGIEKSFKAIKQADLVIYVLDASQP-LTKDDF-LIIDLNKSKKPFILVLNKI 320 (442)
T ss_pred EEEEeeCCCcccch---------hHHHHHHHHHHHHHHhhCCEEEEEEECCCC-CChhHH-HHHHHhhCCCCEEEEEECc
Confidence 46899999996431 001111 13456788888877766543322 222222 3444444567899999999
Q ss_pred Ccc
Q 004351 212 DTK 214 (759)
Q Consensus 212 D~~ 214 (759)
|+.
T Consensus 321 Dl~ 323 (442)
T TIGR00450 321 DLK 323 (442)
T ss_pred cCC
Confidence 985
No 47
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=98.41 E-value=1.3e-06 Score=90.86 Aligned_cols=74 Identities=14% Similarity=0.027 Sum_probs=47.6
Q ss_pred EEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhc-CccceeEeecccCCcCcHHHHHHHHHhCcCCCeE
Q 004351 126 VEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQ-HREFIILCLEDCSDWSNATTRRVVMQIDPELKRT 204 (759)
Q Consensus 126 I~~p~~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~-~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~RT 204 (759)
+.......++||||||... ....++..... .++.++ +|+++.+-......+++..+...|...
T Consensus 78 ~~~~~~~~i~liDtpG~~~---------------~~~~~~~~~~~~~~D~~l-lVvda~~g~~~~d~~~l~~l~~~~ip~ 141 (224)
T cd04165 78 ICEKSSKLVTFIDLAGHER---------------YLKTTLFGLTGYAPDYAM-LVVAANAGIIGMTKEHLGLALALNIPV 141 (224)
T ss_pred eeeeCCcEEEEEECCCcHH---------------HHHHHHHhhcccCCCEEE-EEEECCCCCcHHHHHHHHHHHHcCCCE
Confidence 3334456899999999632 22344544332 345444 455554334566677777777778889
Q ss_pred EEEecCCCccc
Q 004351 205 IIVSTKLDTKI 215 (759)
Q Consensus 205 IgVlTK~D~~~ 215 (759)
|+|+||+|+..
T Consensus 142 ivvvNK~D~~~ 152 (224)
T cd04165 142 FVVVTKIDLAP 152 (224)
T ss_pred EEEEECccccC
Confidence 99999999863
No 48
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=98.38 E-value=1.7e-06 Score=85.17 Aligned_cols=66 Identities=23% Similarity=0.169 Sum_probs=42.3
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHHHHHhCcCCCeEEEEecCC
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKL 211 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~RTIgVlTK~ 211 (759)
..+.|+||||... ...++..|+...+.+|+++-.... .....+.....+...+...|.|+||.
T Consensus 67 ~~~~l~Dt~G~~~----------------~~~~~~~~~~~ad~~i~v~D~~~~-~~~~~~~~~~~~~~~~~~iiiv~NK~ 129 (179)
T cd01890 67 YLLNLIDTPGHVD----------------FSYEVSRSLAACEGALLLVDATQG-VEAQTLANFYLALENNLEIIPVINKI 129 (179)
T ss_pred EEEEEEECCCChh----------------hHHHHHHHHHhcCeEEEEEECCCC-ccHhhHHHHHHHHHcCCCEEEEEECC
Confidence 4688999999843 124666788888887776643322 22223333333333567899999999
Q ss_pred Ccc
Q 004351 212 DTK 214 (759)
Q Consensus 212 D~~ 214 (759)
|+.
T Consensus 130 Dl~ 132 (179)
T cd01890 130 DLP 132 (179)
T ss_pred CCC
Confidence 984
No 49
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=98.38 E-value=3e-06 Score=95.09 Aligned_cols=142 Identities=19% Similarity=0.267 Sum_probs=85.5
Q ss_pred cHHHHHHHHHHhhhhcCCCCCC-CEEEEEeccCCchHHHHHHHhCCccceecCccccccceEEEEeeCCCCCCCceEEec
Q 004351 3 SLYEAYNELHGLAQELETPFDA-PAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCHLAS 81 (759)
Q Consensus 3 ~L~~~~n~L~~l~~~~~~~i~l-PqIVVVG~QSsGKSSLLEAL~G~~fp~~g~g~cTR~P~~l~l~~~~~~~~~~~~i~~ 81 (759)
++.+.++++..-+.. ++.+.= -.+|++|..++|||||||||+|..-..+..
T Consensus 196 ~~~~~l~~ll~~~~~-g~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTd--------------------------- 247 (454)
T COG0486 196 ELIAELDELLATAKQ-GKILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTD--------------------------- 247 (454)
T ss_pred HHHHHHHHHHHhhhh-hhhhhcCceEEEECCCCCcHHHHHHHHhcCCceEecC---------------------------
Confidence 455566666666543 333333 379999999999999999999988543210
Q ss_pred CCCCCCcccccChHHHHHHHHHHHhhhhhccCCCccccceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHH-HHHH
Q 004351 82 SDVDPTLAQEKSLQEIQSFIEAENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQD-QARA 160 (759)
Q Consensus 82 ~d~~~~~~~~~~~~~l~~~Ie~~~~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~~~q~~~~e~-~~~~ 160 (759)
+ .+-+.|+|+-.|.- +..++.|+||-|+..... -+|. .++
T Consensus 248 --------------------------I------~GTTRDviee~i~i-~G~pv~l~DTAGiRet~d-----~VE~iGIe- 288 (454)
T COG0486 248 --------------------------I------AGTTRDVIEEDINL-NGIPVRLVDTAGIRETDD-----VVERIGIE- 288 (454)
T ss_pred --------------------------C------CCCccceEEEEEEE-CCEEEEEEecCCcccCcc-----HHHHHHHH-
Confidence 0 11223444444433 246799999999975321 1111 122
Q ss_pred HHHHHHHHhcCccceeEeecccCCcCcHHHHHHHHHhCcCCCeEEEEecCCCcccc
Q 004351 161 VESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKLDTKIP 216 (759)
Q Consensus 161 v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~RTIgVlTK~D~~~~ 216 (759)
-.++-++..+ +||+|.+++.........+.. .-|.+.+++.|+||.|+..+
T Consensus 289 ---Rs~~~i~~AD-lvL~v~D~~~~~~~~d~~~~~-~~~~~~~~i~v~NK~DL~~~ 339 (454)
T COG0486 289 ---RAKKAIEEAD-LVLFVLDASQPLDKEDLALIE-LLPKKKPIIVVLNKADLVSK 339 (454)
T ss_pred ---HHHHHHHhCC-EEEEEEeCCCCCchhhHHHHH-hcccCCCEEEEEechhcccc
Confidence 2233444555 666666665433334444443 45678899999999999754
No 50
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=98.37 E-value=3e-06 Score=96.94 Aligned_cols=27 Identities=33% Similarity=0.540 Sum_probs=24.0
Q ss_pred CCCEEEEEeccCCchHHHHHHHhCCcc
Q 004351 23 DAPAVLVVGHQTDGKSALVEALMGFQF 49 (759)
Q Consensus 23 ~lPqIVVVG~QSsGKSSLLEAL~G~~f 49 (759)
+-+.|+++|..++|||||+|+|+|..+
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~ 240 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEER 240 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 347899999999999999999998764
No 51
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=98.36 E-value=1.8e-06 Score=82.70 Aligned_cols=71 Identities=15% Similarity=0.239 Sum_probs=42.0
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhc--CccceeEeecccCCcCcHHHHHHHHHhCcCCCeEEEEec
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQ--HREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVST 209 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~--~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~RTIgVlT 209 (759)
.++.|+||||......-. .-..+...|+. +.+.+|+ |.+.++..+ ......++...+...|.|+|
T Consensus 43 ~~~~liDtpG~~~~~~~~----------~~~~~~~~~~~~~~~d~vi~-v~d~~~~~~--~~~~~~~~~~~~~~~iiv~N 109 (158)
T cd01879 43 KEIEIVDLPGTYSLSPYS----------EDEKVARDFLLGEKPDLIVN-VVDATNLER--NLYLTLQLLELGLPVVVALN 109 (158)
T ss_pred eEEEEEECCCccccCCCC----------hhHHHHHHHhcCCCCcEEEE-EeeCCcchh--HHHHHHHHHHcCCCEEEEEe
Confidence 478999999996532111 01245666775 5555554 444433322 22333344445678999999
Q ss_pred CCCccc
Q 004351 210 KLDTKI 215 (759)
Q Consensus 210 K~D~~~ 215 (759)
|.|+..
T Consensus 110 K~Dl~~ 115 (158)
T cd01879 110 MIDEAE 115 (158)
T ss_pred hhhhcc
Confidence 999953
No 52
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=98.36 E-value=2.6e-06 Score=83.85 Aligned_cols=29 Identities=21% Similarity=0.446 Sum_probs=24.9
Q ss_pred CCCCCEEEEEeccCCchHHHHHHHhCCcc
Q 004351 21 PFDAPAVLVVGHQTDGKSALVEALMGFQF 49 (759)
Q Consensus 21 ~i~lPqIVVVG~QSsGKSSLLEAL~G~~f 49 (759)
.-.-+.|+++|+.++|||||+++|+|..+
T Consensus 11 ~~~~~kv~ivG~~~~GKTsL~~~l~~~~~ 39 (173)
T cd04154 11 KEREMRILILGLDNAGKTTILKKLLGEDI 39 (173)
T ss_pred CCCccEEEEECCCCCCHHHHHHHHccCCC
Confidence 34557899999999999999999998744
No 53
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=98.35 E-value=2.3e-06 Score=96.84 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=22.9
Q ss_pred CCEEEEEeccCCchHHHHHHHhCCc
Q 004351 24 APAVLVVGHQTDGKSALVEALMGFQ 48 (759)
Q Consensus 24 lPqIVVVG~QSsGKSSLLEAL~G~~ 48 (759)
++.|++||..++||||||++|++..
T Consensus 158 ~adVglVG~pNaGKSTLLn~Lt~ak 182 (424)
T PRK12297 158 LADVGLVGFPNVGKSTLLSVVSNAK 182 (424)
T ss_pred cCcEEEEcCCCCCHHHHHHHHHcCC
Confidence 3599999999999999999999866
No 54
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=98.35 E-value=3.5e-06 Score=81.72 Aligned_cols=67 Identities=13% Similarity=0.064 Sum_probs=44.1
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccC--CcC-cHHHHHHHHHhCcCCCeEEEEec
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCS--DWS-NATTRRVVMQIDPELKRTIIVST 209 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~--D~~-~~~~l~lar~~Dp~g~RTIgVlT 209 (759)
.+.|+|+||.. ....+...|+++.+.+|+++...+ .+. -..++..+++..+.+...+.|.|
T Consensus 53 ~~~l~D~~g~~----------------~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~n 116 (165)
T cd01868 53 KAQIWDTAGQE----------------RYRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGN 116 (165)
T ss_pred EEEEEeCCChH----------------HHHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEE
Confidence 57889999962 233567788888777777764321 111 12244555666666778999999
Q ss_pred CCCccc
Q 004351 210 KLDTKI 215 (759)
Q Consensus 210 K~D~~~ 215 (759)
|.|+..
T Consensus 117 K~Dl~~ 122 (165)
T cd01868 117 KSDLRH 122 (165)
T ss_pred Cccccc
Confidence 999853
No 55
>PRK15494 era GTPase Era; Provisional
Probab=98.35 E-value=3.7e-06 Score=92.83 Aligned_cols=25 Identities=28% Similarity=0.644 Sum_probs=23.5
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.|++||+.++|||||+|+|+|..+.
T Consensus 54 kV~ivG~~nvGKSTLin~l~~~k~~ 78 (339)
T PRK15494 54 SVCIIGRPNSGKSTLLNRIIGEKLS 78 (339)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCcee
Confidence 7999999999999999999998874
No 56
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=98.35 E-value=2.5e-06 Score=82.17 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=23.5
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.|+|+|+.++|||||+++|++..|+
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~ 26 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFV 26 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC
Confidence 5899999999999999999998886
No 57
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=98.33 E-value=4e-06 Score=94.82 Aligned_cols=75 Identities=19% Similarity=0.199 Sum_probs=47.5
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHH-HHHHHHhcCccceeEeecccCCcCcHHHHHHHHHhCcCCCeEEEEecCC
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVE-SLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKL 211 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~-~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~RTIgVlTK~ 211 (759)
.++|+||||+.....-.. ..+... .....+++..+.+|+++ ++.+..+....++++.+...|.+.|.|+||+
T Consensus 221 ~~~liDT~G~~~~~~~~~------~~e~~~~~~~~~~~~~ad~~ilV~-D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~ 293 (429)
T TIGR03594 221 KYLLIDTAGIRRKGKVTE------GVEKYSVLRTLKAIERADVVLLVL-DATEGITEQDLRIAGLILEAGKALVIVVNKW 293 (429)
T ss_pred EEEEEECCCccccccchh------hHHHHHHHHHHHHHHhCCEEEEEE-ECCCCccHHHHHHHHHHHHcCCcEEEEEECc
Confidence 588999999976432110 011111 12345677777666655 4434445555667777666788999999999
Q ss_pred Ccc
Q 004351 212 DTK 214 (759)
Q Consensus 212 D~~ 214 (759)
|+.
T Consensus 294 Dl~ 296 (429)
T TIGR03594 294 DLV 296 (429)
T ss_pred ccC
Confidence 996
No 58
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=98.33 E-value=3.6e-06 Score=92.69 Aligned_cols=25 Identities=32% Similarity=0.403 Sum_probs=23.1
Q ss_pred CCEEEEEeccCCchHHHHHHHhCCc
Q 004351 24 APAVLVVGHQTDGKSALVEALMGFQ 48 (759)
Q Consensus 24 lPqIVVVG~QSsGKSSLLEAL~G~~ 48 (759)
++.|.+||-.+|||||||++|++..
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~a~ 182 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSAAK 182 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHcCC
Confidence 5789999999999999999999865
No 59
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.33 E-value=3.4e-06 Score=101.77 Aligned_cols=123 Identities=20% Similarity=0.315 Sum_probs=77.5
Q ss_pred CCCEEEEEeccCCchHHHHHHHhCCccceecCccccccceEEEEeeCCCCCCCceEEecCCCCCCcccccChHHHHHHHH
Q 004351 23 DAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEIQSFIE 102 (759)
Q Consensus 23 ~lPqIVVVG~QSsGKSSLLEAL~G~~fp~~g~g~cTR~P~~l~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~l~~~Ie 102 (759)
.+|.|++||..++|||||+|+|+|..+..++.. +
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~--------------p-------------------------------- 307 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDT--------------P-------------------------------- 307 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCC--------------C--------------------------------
Confidence 458899999999999999999998764322100 0
Q ss_pred HHHhhhhhccCCCccccceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeeccc
Q 004351 103 AENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDC 182 (759)
Q Consensus 103 ~~~~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~ 182 (759)
+++.+.+....+.. ..++.|+||||+..... .+ ...+.+.+..|+...+.+|++| ++
T Consensus 308 -------------GvT~d~~~~~~~~~-~~~~~liDT~G~~~~~~-----~~---~~~~~~~~~~~~~~aD~iL~Vv-Da 364 (712)
T PRK09518 308 -------------GVTRDRVSYDAEWA-GTDFKLVDTGGWEADVE-----GI---DSAIASQAQIAVSLADAVVFVV-DG 364 (712)
T ss_pred -------------CeeEEEEEEEEEEC-CEEEEEEeCCCcCCCCc-----cH---HHHHHHHHHHHHHhCCEEEEEE-EC
Confidence 01111122222221 23588999999864221 11 2345566777888888666655 44
Q ss_pred CCcCcHHHHHHHHHhCcCCCeEEEEecCCCcc
Q 004351 183 SDWSNATTRRVVMQIDPELKRTIIVSTKLDTK 214 (759)
Q Consensus 183 ~D~~~~~~l~lar~~Dp~g~RTIgVlTK~D~~ 214 (759)
.+-.+.....+++.+...+...|.|+||.|+.
T Consensus 365 ~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~ 396 (712)
T PRK09518 365 QVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQ 396 (712)
T ss_pred CCCCCHHHHHHHHHHHhcCCCEEEEEECcccc
Confidence 33233344456666667789999999999985
No 60
>COG1160 Predicted GTPases [General function prediction only]
Probab=98.32 E-value=9.2e-06 Score=91.02 Aligned_cols=127 Identities=20% Similarity=0.240 Sum_probs=84.3
Q ss_pred CCCEEEEEeccCCchHHHHHHHhCCccceecCccccccceEEEEeeCCCCCCCceEEecCCCCCCcccccChHHHHHHHH
Q 004351 23 DAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEIQSFIE 102 (759)
Q Consensus 23 ~lPqIVVVG~QSsGKSSLLEAL~G~~fp~~g~g~cTR~P~~l~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~l~~~Ie 102 (759)
+.-+|++||..++|||||+|+|+|-.-.-++.-
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~----------------------------------------------- 209 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDI----------------------------------------------- 209 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCC-----------------------------------------------
Confidence 356899999999999999999999773222100
Q ss_pred HHHhhhhhccCCCccccceEEEEEEecCCCCcEEEeCCCCcCCCCCCC-chhhHHHHHHHHHHHHHHhcCccceeEeecc
Q 004351 103 AENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRK-NRALQDQARAVESLVRAKMQHREFIILCLED 181 (759)
Q Consensus 103 ~~~~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~~~q-~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~ 181 (759)
.+-+.|.|.+.++. +.-..+||||-|+.+...=.. -+.. +-.+.... |... .+++.|.+
T Consensus 210 ------------aGTTRD~I~~~~e~-~~~~~~liDTAGiRrk~ki~e~~E~~-Sv~rt~~a-----I~~a-~vvllviD 269 (444)
T COG1160 210 ------------AGTTRDSIDIEFER-DGRKYVLIDTAGIRRKGKITESVEKY-SVARTLKA-----IERA-DVVLLVID 269 (444)
T ss_pred ------------CCccccceeeeEEE-CCeEEEEEECCCCCcccccccceEEE-eehhhHhH-----Hhhc-CEEEEEEE
Confidence 12233455555554 345789999999987543111 0000 11121112 2233 46667777
Q ss_pred cCCcCcHHHHHHHHHhCcCCCeEEEEecCCCcccc
Q 004351 182 CSDWSNATTRRVVMQIDPELKRTIIVSTKLDTKIP 216 (759)
Q Consensus 182 ~~D~~~~~~l~lar~~Dp~g~RTIgVlTK~D~~~~ 216 (759)
+.+.-+.+..+++..+-..|.-.|.|++|+|++..
T Consensus 270 a~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~~~ 304 (444)
T COG1160 270 ATEGISEQDLRIAGLIEEAGRGIVIVVNKWDLVEE 304 (444)
T ss_pred CCCCchHHHHHHHHHHHHcCCCeEEEEEccccCCc
Confidence 77777778899999888899999999999999764
No 61
>PRK03003 GTP-binding protein Der; Reviewed
Probab=98.32 E-value=3.4e-06 Score=97.02 Aligned_cols=76 Identities=18% Similarity=0.197 Sum_probs=47.0
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHH-HHHHhcCccceeEeecccCCcCcHHHHHHHHHhCcCCCeEEEEecCC
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESL-VRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKL 211 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~l-v~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~RTIgVlTK~ 211 (759)
.+.|+||||+.+...... ..+....+ ...++++.+.+|+++ ++++..+...++++..+...+...|.|+||+
T Consensus 260 ~~~l~DTaG~~~~~~~~~------~~e~~~~~~~~~~i~~ad~vilV~-Da~~~~s~~~~~~~~~~~~~~~piIiV~NK~ 332 (472)
T PRK03003 260 TWRFVDTAGLRRRVKQAS------GHEYYASLRTHAAIEAAEVAVVLI-DASEPISEQDQRVLSMVIEAGRALVLAFNKW 332 (472)
T ss_pred EEEEEECCCccccccccc------hHHHHHHHHHHHHHhcCCEEEEEE-eCCCCCCHHHHHHHHHHHHcCCCEEEEEECc
Confidence 357899999965432110 01222222 234677777766655 4444445555666766666788999999999
Q ss_pred Cccc
Q 004351 212 DTKI 215 (759)
Q Consensus 212 D~~~ 215 (759)
|+..
T Consensus 333 Dl~~ 336 (472)
T PRK03003 333 DLVD 336 (472)
T ss_pred ccCC
Confidence 9963
No 62
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=98.32 E-value=3.1e-06 Score=84.60 Aligned_cols=66 Identities=11% Similarity=0.150 Sum_probs=41.2
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCc-HH---HH-HHHHHhCcCCCeEEE
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSN-AT---TR-RVVMQIDPELKRTII 206 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~-~~---~l-~lar~~Dp~g~RTIg 206 (759)
-.|.|+||||.. ....+...|+++.+.+|+++. +++..+ .. .+ ++.+.....+...+.
T Consensus 52 ~~l~l~Dt~G~~----------------~~~~~~~~~~~~~d~ii~v~D-~~~~~~~~~~~~~~~~i~~~~~~~~~p~ii 114 (183)
T cd04152 52 ITFHFWDVGGQE----------------KLRPLWKSYTRCTDGIVFVVD-SVDVERMEEAKTELHKITRFSENQGVPVLV 114 (183)
T ss_pred eEEEEEECCCcH----------------hHHHHHHHHhccCCEEEEEEE-CCCHHHHHHHHHHHHHHHhhhhcCCCcEEE
Confidence 457899999962 123566778888887776664 333221 11 11 233333445678999
Q ss_pred EecCCCcc
Q 004351 207 VSTKLDTK 214 (759)
Q Consensus 207 VlTK~D~~ 214 (759)
|+||.|+.
T Consensus 115 v~NK~D~~ 122 (183)
T cd04152 115 LANKQDLP 122 (183)
T ss_pred EEECcCcc
Confidence 99999984
No 63
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=98.32 E-value=3.4e-06 Score=84.99 Aligned_cols=67 Identities=21% Similarity=0.229 Sum_probs=45.2
Q ss_pred CCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHHHHHhCcCCCeEEEEecC
Q 004351 131 CPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTK 210 (759)
Q Consensus 131 ~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~RTIgVlTK 210 (759)
...+.|+||||... ...++..|+++.+.+|+++....... .....+.+.+...+.+.+.|+||
T Consensus 64 ~~~~~l~DtpG~~~----------------~~~~~~~~~~~~d~~ilV~d~~~~~~-~~~~~~~~~~~~~~~p~iiv~NK 126 (194)
T cd01891 64 DTKINIVDTPGHAD----------------FGGEVERVLSMVDGVLLLVDASEGPM-PQTRFVLKKALELGLKPIVVINK 126 (194)
T ss_pred CEEEEEEECCCcHH----------------HHHHHHHHHHhcCEEEEEEECCCCcc-HHHHHHHHHHHHcCCCEEEEEEC
Confidence 35789999999732 23567788999988887665433222 22233344444457889999999
Q ss_pred CCcc
Q 004351 211 LDTK 214 (759)
Q Consensus 211 ~D~~ 214 (759)
.|+.
T Consensus 127 ~Dl~ 130 (194)
T cd01891 127 IDRP 130 (194)
T ss_pred CCCC
Confidence 9985
No 64
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=98.32 E-value=3.8e-06 Score=79.58 Aligned_cols=25 Identities=40% Similarity=0.664 Sum_probs=23.2
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
+|+++|.+++|||||+++|.|..|+
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~ 25 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFS 25 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCC
Confidence 5899999999999999999998875
No 65
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=98.31 E-value=4.1e-06 Score=80.66 Aligned_cols=25 Identities=24% Similarity=0.507 Sum_probs=23.3
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.|+++|+.++|||||+++|+|..+.
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~ 26 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFD 26 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC
Confidence 5899999999999999999998876
No 66
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=98.30 E-value=3.9e-06 Score=80.75 Aligned_cols=66 Identities=15% Similarity=0.194 Sum_probs=41.2
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCc----HHHHHHHHH---hCcCCCeE
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSN----ATTRRVVMQ---IDPELKRT 204 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~----~~~l~lar~---~Dp~g~RT 204 (759)
..+.|+||||... ...+...|+++.+.+|+++... +... ...+..+.. +...+.+.
T Consensus 45 ~~~~l~Dt~G~~~----------------~~~~~~~~~~~~d~ii~v~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 107 (162)
T cd04157 45 LSFTAFDMSGQGK----------------YRGLWEHYYKNIQGIIFVIDSS-DRLRLVVVKDELELLLNHPDIKHRRVPI 107 (162)
T ss_pred EEEEEEECCCCHh----------------hHHHHHHHHccCCEEEEEEeCC-cHHHHHHHHHHHHHHHcCcccccCCCCE
Confidence 3578999999732 2356677888888877765432 2221 112222222 12346789
Q ss_pred EEEecCCCcc
Q 004351 205 IIVSTKLDTK 214 (759)
Q Consensus 205 IgVlTK~D~~ 214 (759)
+.|+||.|+.
T Consensus 108 iiv~NK~Dl~ 117 (162)
T cd04157 108 LFFANKMDLP 117 (162)
T ss_pred EEEEeCcccc
Confidence 9999999985
No 67
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.29 E-value=2.8e-06 Score=94.17 Aligned_cols=136 Identities=21% Similarity=0.323 Sum_probs=69.6
Q ss_pred HHHHHHHHHHhhhhcCCCCCCCEEEEEeccCCchHHHHHHHhCCccceecCccccccceEEEEeeCCCCCCCceEEecCC
Q 004351 4 LYEAYNELHGLAQELETPFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCHLASSD 83 (759)
Q Consensus 4 L~~~~n~L~~l~~~~~~~i~lPqIVVVG~QSsGKSSLLEAL~G~~fp~~g~g~cTR~P~~l~l~~~~~~~~~~~~i~~~d 83 (759)
+-++.+.++..-..+. ..++ .|+|+|+.|+||||+||||-|+.= -+.|. .+.
T Consensus 17 ~~~~~s~i~~~l~~~~-~~~l-~IaV~G~sGsGKSSfINalrGl~~--~d~~a-----------------A~t------- 68 (376)
T PF05049_consen 17 LQEVVSKIREALKDID-NAPL-NIAVTGESGSGKSSFINALRGLGH--EDEGA-----------------APT------- 68 (376)
T ss_dssp HHHHHHHHHHHHHHHH-H--E-EEEEEESTTSSHHHHHHHHTT--T--TSTTS-------------------S-------
T ss_pred HHHHHHHHHHHHHHhh-cCce-EEEEECCCCCCHHHHHHHHhCCCC--CCcCc-----------------CCC-------
Confidence 4455666666543331 2223 899999999999999999998751 11110 000
Q ss_pred CCCCcccccChHHHHHHHHHHHhhhhhccCCCccccceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHH
Q 004351 84 VDPTLAQEKSLQEIQSFIEAENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVES 163 (759)
Q Consensus 84 ~~~~~~~~~~~~~l~~~Ie~~~~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~ 163 (759)
+-.+++ - + .-.-..|..||.+|.||||++... .+ .. +
T Consensus 69 ----Gv~etT-----------------------~--~--~~~Y~~p~~pnv~lWDlPG~gt~~---f~------~~---~ 105 (376)
T PF05049_consen 69 ----GVVETT-----------------------M--E--PTPYPHPKFPNVTLWDLPGIGTPN---FP------PE---E 105 (376)
T ss_dssp ----SSHSCC-----------------------T--S---EEEE-SS-TTEEEEEE--GGGSS-----------HH---H
T ss_pred ----CCCcCC-----------------------C--C--CeeCCCCCCCCCeEEeCCCCCCCC---CC------HH---H
Confidence 000000 0 0 113345788999999999997542 11 11 1
Q ss_pred HHHHH-hcCccceeEeecccCCcCcHHHHHHHHHhCcCCCeEEEEecCCCc
Q 004351 164 LVRAK-MQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKLDT 213 (759)
Q Consensus 164 lv~~Y-i~~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~RTIgVlTK~D~ 213 (759)
-..+. +.+=+.+|+ |.+. --......+|+++.--|.+..+|-||.|.
T Consensus 106 Yl~~~~~~~yD~fii-i~s~--rf~~ndv~La~~i~~~gK~fyfVRTKvD~ 153 (376)
T PF05049_consen 106 YLKEVKFYRYDFFII-ISSE--RFTENDVQLAKEIQRMGKKFYFVRTKVDS 153 (376)
T ss_dssp HHHHTTGGG-SEEEE-EESS--S--HHHHHHHHHHHHTT-EEEEEE--HHH
T ss_pred HHHHccccccCEEEE-EeCC--CCchhhHHHHHHHHHcCCcEEEEEecccc
Confidence 11111 223343333 3332 22345678888888889999999999996
No 68
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=98.28 E-value=4.4e-06 Score=96.05 Aligned_cols=25 Identities=36% Similarity=0.493 Sum_probs=23.0
Q ss_pred CCEEEEEeccCCchHHHHHHHhCCc
Q 004351 24 APAVLVVGHQTDGKSALVEALMGFQ 48 (759)
Q Consensus 24 lPqIVVVG~QSsGKSSLLEAL~G~~ 48 (759)
++.|++||..|+||||||++|++..
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~ak 183 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAK 183 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCC
Confidence 5789999999999999999999864
No 69
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=98.28 E-value=4.3e-06 Score=91.93 Aligned_cols=25 Identities=32% Similarity=0.403 Sum_probs=23.1
Q ss_pred CCEEEEEeccCCchHHHHHHHhCCc
Q 004351 24 APAVLVVGHQTDGKSALVEALMGFQ 48 (759)
Q Consensus 24 lPqIVVVG~QSsGKSSLLEAL~G~~ 48 (759)
++.|++||..++||||||++|++..
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~ 181 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAK 181 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCC
Confidence 4789999999999999999999865
No 70
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=98.28 E-value=5.9e-06 Score=80.95 Aligned_cols=28 Identities=21% Similarity=0.324 Sum_probs=25.0
Q ss_pred CCEEEEEeccCCchHHHHHHHhCCccce
Q 004351 24 APAVLVVGHQTDGKSALVEALMGFQFNH 51 (759)
Q Consensus 24 lPqIVVVG~QSsGKSSLLEAL~G~~fp~ 51 (759)
+..|+|||++++|||||++.+++..+++
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~ 31 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQP 31 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCC
Confidence 3589999999999999999999988764
No 71
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.27 E-value=6.2e-06 Score=80.24 Aligned_cols=67 Identities=13% Similarity=0.123 Sum_probs=44.8
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCC--cC-cHHHHHHHHHhCcCCCeEEEEec
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSD--WS-NATTRRVVMQIDPELKRTIIVST 209 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D--~~-~~~~l~lar~~Dp~g~RTIgVlT 209 (759)
.+.|+|+||-. ....+...|++..+.+++++...+. +. ...++...+...+.+...|.|.|
T Consensus 53 ~l~i~D~~G~~----------------~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~n 116 (165)
T cd01864 53 KLQIWDTAGQE----------------RFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGN 116 (165)
T ss_pred EEEEEECCChH----------------HHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEE
Confidence 67899999941 2345778888888888877643321 11 12345555555566678999999
Q ss_pred CCCccc
Q 004351 210 KLDTKI 215 (759)
Q Consensus 210 K~D~~~ 215 (759)
|.|+..
T Consensus 117 K~Dl~~ 122 (165)
T cd01864 117 KCDLEE 122 (165)
T ss_pred Cccccc
Confidence 999863
No 72
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.27 E-value=5e-06 Score=80.82 Aligned_cols=65 Identities=23% Similarity=0.218 Sum_probs=42.0
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCc----HHHHHHHHHhCcCCCeEEEEe
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSN----ATTRRVVMQIDPELKRTIIVS 208 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~----~~~l~lar~~Dp~g~RTIgVl 208 (759)
.+.++|+||... ...+...|++..+.+++++.. ++..+ ..++...+.+.+.+...|.|.
T Consensus 57 ~~~~~D~~g~~~----------------~~~~~~~~~~~~d~~i~v~d~-~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~ 119 (169)
T cd04114 57 KLQIWDTAGQER----------------FRSITQSYYRSANALILTYDI-TCEESFRCLPEWLREIEQYANNKVITILVG 119 (169)
T ss_pred EEEEEECCCcHH----------------HHHHHHHHhcCCCEEEEEEEC-cCHHHHHHHHHHHHHHHHhCCCCCeEEEEE
Confidence 467899999521 234556788888877776642 22111 233444566566677889999
Q ss_pred cCCCcc
Q 004351 209 TKLDTK 214 (759)
Q Consensus 209 TK~D~~ 214 (759)
||.|+.
T Consensus 120 NK~D~~ 125 (169)
T cd04114 120 NKIDLA 125 (169)
T ss_pred ECcccc
Confidence 999985
No 73
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=98.26 E-value=5.6e-06 Score=79.69 Aligned_cols=66 Identities=15% Similarity=0.080 Sum_probs=42.2
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHH----HHHHHHHhCcCCCeEEEEe
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNAT----TRRVVMQIDPELKRTIIVS 208 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~----~l~lar~~Dp~g~RTIgVl 208 (759)
.+.++|+||.. ....+...|+++.+.+|+++... +..+.+ ++.........+...+.|.
T Consensus 50 ~~~l~D~~G~~----------------~~~~~~~~~~~~~d~~ilv~d~~-~~~s~~~~~~~l~~~~~~~~~~~pivvv~ 112 (164)
T smart00175 50 KLQIWDTAGQE----------------RFRSITSSYYRGAVGALLVYDIT-NRESFENLKNWLKELREYADPNVVIMLVG 112 (164)
T ss_pred EEEEEECCChH----------------HHHHHHHHHhCCCCEEEEEEECC-CHHHHHHHHHHHHHHHHhCCCCCeEEEEE
Confidence 46799999942 12357778888888888777533 222222 2233333332468899999
Q ss_pred cCCCccc
Q 004351 209 TKLDTKI 215 (759)
Q Consensus 209 TK~D~~~ 215 (759)
||.|+..
T Consensus 113 nK~D~~~ 119 (164)
T smart00175 113 NKSDLED 119 (164)
T ss_pred Echhccc
Confidence 9999864
No 74
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=98.26 E-value=4.7e-06 Score=83.71 Aligned_cols=81 Identities=20% Similarity=0.266 Sum_probs=49.0
Q ss_pred cccceEEEEEE-ecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHHHH
Q 004351 117 FSAKEIIIKVE-FKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVM 195 (759)
Q Consensus 117 fS~d~I~leI~-~p~~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar 195 (759)
++-+.-...+. ......++|||+||.. +.+.++. .-++..+.+|++|.+ .+.......+.++
T Consensus 54 ~ti~~~~~~~~~~~~~~~i~~iDtPG~~---------------~f~~~~~-~~~~~~D~ailvVda-~~g~~~~~~~~l~ 116 (188)
T PF00009_consen 54 ITIDLSFISFEKNENNRKITLIDTPGHE---------------DFIKEMI-RGLRQADIAILVVDA-NDGIQPQTEEHLK 116 (188)
T ss_dssp SSSSSEEEEEEBTESSEEEEEEEESSSH---------------HHHHHHH-HHHTTSSEEEEEEET-TTBSTHHHHHHHH
T ss_pred cccccccccccccccccceeeccccccc---------------ceeeccc-ceecccccceeeeec-ccccccccccccc
Confidence 33333334444 3345789999999962 1222333 347778877666643 3334445555555
Q ss_pred HhCcCCCeEEEEecCCCcc
Q 004351 196 QIDPELKRTIIVSTKLDTK 214 (759)
Q Consensus 196 ~~Dp~g~RTIgVlTK~D~~ 214 (759)
.+...+.+.|+|+||+|+.
T Consensus 117 ~~~~~~~p~ivvlNK~D~~ 135 (188)
T PF00009_consen 117 ILRELGIPIIVVLNKMDLI 135 (188)
T ss_dssp HHHHTT-SEEEEEETCTSS
T ss_pred cccccccceEEeeeeccch
Confidence 5555566799999999997
No 75
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=98.26 E-value=5.6e-06 Score=80.48 Aligned_cols=25 Identities=24% Similarity=0.543 Sum_probs=23.1
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.|+|+|+.++|||||+++|++..++
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~ 26 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFS 26 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 5899999999999999999998775
No 76
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=98.25 E-value=8.3e-06 Score=79.72 Aligned_cols=66 Identities=23% Similarity=0.178 Sum_probs=43.9
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCc----HHHHHHHHHhCcCCCeEEEEe
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSN----ATTRRVVMQIDPELKRTIIVS 208 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~----~~~l~lar~~Dp~g~RTIgVl 208 (759)
.+.|+|+||... ...+...|+++.+.+|+++... +..+ ..++...+...+.+...+.|.
T Consensus 53 ~l~l~D~~g~~~----------------~~~~~~~~~~~ad~~i~v~d~~-~~~s~~~~~~~~~~i~~~~~~~~p~iiv~ 115 (167)
T cd01867 53 KLQIWDTAGQER----------------FRTITTAYYRGAMGIILVYDIT-DEKSFENIRNWMRNIEEHASEDVERMLVG 115 (167)
T ss_pred EEEEEeCCchHH----------------HHHHHHHHhCCCCEEEEEEECc-CHHHHHhHHHHHHHHHHhCCCCCcEEEEE
Confidence 578899999521 2356678888888888776422 1111 223444555566678899999
Q ss_pred cCCCccc
Q 004351 209 TKLDTKI 215 (759)
Q Consensus 209 TK~D~~~ 215 (759)
||.|+..
T Consensus 116 nK~Dl~~ 122 (167)
T cd01867 116 NKCDMEE 122 (167)
T ss_pred ECccccc
Confidence 9999963
No 77
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=98.25 E-value=9.1e-06 Score=79.28 Aligned_cols=66 Identities=18% Similarity=0.105 Sum_probs=43.6
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcC----cHHHHHHHHHhCcCCCeEEEEe
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWS----NATTRRVVMQIDPELKRTIIVS 208 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~----~~~~l~lar~~Dp~g~RTIgVl 208 (759)
.+.|+|+||... ...+...|+++.+.+++++..+ +.. ...+++..+...+.....+.|.
T Consensus 51 ~~~l~Dt~g~~~----------------~~~~~~~~~~~~~~~l~v~d~~-~~~s~~~~~~~~~~i~~~~~~~~piivv~ 113 (165)
T cd01865 51 KLQIWDTAGQER----------------YRTITTAYYRGAMGFILMYDIT-NEESFNAVQDWSTQIKTYSWDNAQVILVG 113 (165)
T ss_pred EEEEEECCChHH----------------HHHHHHHHccCCcEEEEEEECC-CHHHHHHHHHHHHHHHHhCCCCCCEEEEE
Confidence 467899999622 2356678888888877776422 211 1234444555566667899999
Q ss_pred cCCCccc
Q 004351 209 TKLDTKI 215 (759)
Q Consensus 209 TK~D~~~ 215 (759)
||.|+..
T Consensus 114 nK~Dl~~ 120 (165)
T cd01865 114 NKCDMED 120 (165)
T ss_pred ECcccCc
Confidence 9999854
No 78
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=98.24 E-value=9e-06 Score=79.28 Aligned_cols=66 Identities=14% Similarity=0.123 Sum_probs=43.7
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCc----HHHHHHHHHhCcCCCeEEEEe
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSN----ATTRRVVMQIDPELKRTIIVS 208 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~----~~~l~lar~~Dp~g~RTIgVl 208 (759)
.|.|.|+||.. ....+...|+++.+.+|+++..++ ..+ ..++..++.........+.|.
T Consensus 52 ~l~i~Dt~G~~----------------~~~~~~~~~~~~~~~~ilv~d~~~-~~s~~~~~~~~~~~~~~~~~~~~iiiv~ 114 (166)
T cd04122 52 KLQIWDTAGQE----------------RFRAVTRSYYRGAAGALMVYDITR-RSTYNHLSSWLTDARNLTNPNTVIFLIG 114 (166)
T ss_pred EEEEEECCCcH----------------HHHHHHHHHhcCCCEEEEEEECCC-HHHHHHHHHHHHHHHHhCCCCCeEEEEE
Confidence 57789999952 234667889999988888775332 111 223444445544457899999
Q ss_pred cCCCccc
Q 004351 209 TKLDTKI 215 (759)
Q Consensus 209 TK~D~~~ 215 (759)
||.|+..
T Consensus 115 nK~Dl~~ 121 (166)
T cd04122 115 NKADLEA 121 (166)
T ss_pred ECccccc
Confidence 9999853
No 79
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=98.23 E-value=9.6e-06 Score=82.60 Aligned_cols=25 Identities=32% Similarity=0.521 Sum_probs=23.4
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.|||+|++++|||||++.+++-.|+
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f~ 26 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEFP 26 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCC
Confidence 5899999999999999999998886
No 80
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.23 E-value=5.9e-06 Score=80.81 Aligned_cols=25 Identities=28% Similarity=0.575 Sum_probs=23.3
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.|++||+.++|||||++++.+-.|+
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~ 26 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFP 26 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCC
Confidence 5899999999999999999998876
No 81
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=98.23 E-value=6.9e-06 Score=79.22 Aligned_cols=25 Identities=28% Similarity=0.487 Sum_probs=23.0
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.|+|+|..++|||||+++|++..++
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~ 26 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFD 26 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC
Confidence 5899999999999999999988775
No 82
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.21 E-value=8.5e-06 Score=98.30 Aligned_cols=125 Identities=22% Similarity=0.256 Sum_probs=74.9
Q ss_pred CCCEEEEEeccCCchHHHHHHHhCCccceecC-ccccccceEEEEeeCCCCCCCceEEecCCCCCCcccccChHHHHHHH
Q 004351 23 DAPAVLVVGHQTDGKSALVEALMGFQFNHVGG-GTKTRRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEIQSFI 101 (759)
Q Consensus 23 ~lPqIVVVG~QSsGKSSLLEAL~G~~fp~~g~-g~cTR~P~~l~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~l~~~I 101 (759)
..|.|+++|..++|||||+|+|+|-.+..++. ...||-+
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~---------------------------------------- 488 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDP---------------------------------------- 488 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCc----------------------------------------
Confidence 46899999999999999999999976431110 0011100
Q ss_pred HHHHhhhhhccCCCccccceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHH-HHHHhcCccceeEeec
Q 004351 102 EAENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESL-VRAKMQHREFIILCLE 180 (759)
Q Consensus 102 e~~~~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~l-v~~Yi~~~~~IIL~V~ 180 (759)
+ ...+++. ...++|+||||+........ ..+....+ ...+++..+.+|+++
T Consensus 489 ---------------~---~~~~~~~---~~~~~liDTaG~~~~~~~~~------~~e~~~~~r~~~~i~~advvilVi- 540 (712)
T PRK09518 489 ---------------V---DEIVEID---GEDWLFIDTAGIKRRQHKLT------GAEYYSSLRTQAAIERSELALFLF- 540 (712)
T ss_pred ---------------c---eeEEEEC---CCEEEEEECCCcccCcccch------hHHHHHHHHHHHHhhcCCEEEEEE-
Confidence 0 0011221 23467999999965332110 01111122 235567777666554
Q ss_pred ccCCcCcHHHHHHHHHhCcCCCeEEEEecCCCccc
Q 004351 181 DCSDWSNATTRRVVMQIDPELKRTIIVSTKLDTKI 215 (759)
Q Consensus 181 ~~~D~~~~~~l~lar~~Dp~g~RTIgVlTK~D~~~ 215 (759)
++++-.+.....++..+...|...|.|+||+|+..
T Consensus 541 Dat~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~~ 575 (712)
T PRK09518 541 DASQPISEQDLKVMSMAVDAGRALVLVFNKWDLMD 575 (712)
T ss_pred ECCCCCCHHHHHHHHHHHHcCCCEEEEEEchhcCC
Confidence 44443445556677777667889999999999963
No 83
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=98.21 E-value=8.5e-06 Score=79.06 Aligned_cols=68 Identities=18% Similarity=0.128 Sum_probs=41.6
Q ss_pred CCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHH----HHHHHHhCcCCCeEEE
Q 004351 131 CPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATT----RRVVMQIDPELKRTII 206 (759)
Q Consensus 131 ~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~----l~lar~~Dp~g~RTIg 206 (759)
...+.++||||... ...+...|++..+.+++++-....-.-... ..+.+.....+.+.|.
T Consensus 49 ~~~~~l~Dt~G~~~----------------~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~il 112 (167)
T cd04160 49 NARLKFWDLGGQES----------------LRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLI 112 (167)
T ss_pred CEEEEEEECCCChh----------------hHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEE
Confidence 35789999999732 224667788888877776643221011111 2222322334678999
Q ss_pred EecCCCcc
Q 004351 207 VSTKLDTK 214 (759)
Q Consensus 207 VlTK~D~~ 214 (759)
|+||.|+.
T Consensus 113 v~NK~D~~ 120 (167)
T cd04160 113 LANKQDLP 120 (167)
T ss_pred EEEccccc
Confidence 99999974
No 84
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=98.20 E-value=9.3e-06 Score=95.54 Aligned_cols=133 Identities=23% Similarity=0.317 Sum_probs=75.4
Q ss_pred CCCCEEEEEeccCCchHHHHHHHhCCccceecCccccccceEEEEeeCCCCCCCceEEecCCCCCCcccccChHHHHHHH
Q 004351 22 FDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEIQSFI 101 (759)
Q Consensus 22 i~lPqIVVVG~QSsGKSSLLEAL~G~~fp~~g~g~cTR~P~~l~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~l~~~I 101 (759)
+..|-|+++|+.++||||||++|+|..|.....|..|+-. .....+-+ ...
T Consensus 2 ~r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~i--------------G~~~v~~~------------~~~--- 52 (590)
T TIGR00491 2 LRSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHI--------------GATEIPMD------------VIE--- 52 (590)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccccccccCCceeccc--------------CeeEeeec------------ccc---
Confidence 4579999999999999999999999987643334444210 00000000 000
Q ss_pred HHHHhhhhhccCCCccccceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecc
Q 004351 102 EAENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLED 181 (759)
Q Consensus 102 e~~~~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~ 181 (759)
.+.+ .. .. ..++..+ .+.++|+||||... ...|...|.+..+.+||++..
T Consensus 53 -----~~~~-----~~-~~--~~~v~~~-~~~l~~iDTpG~e~----------------f~~l~~~~~~~aD~~IlVvD~ 102 (590)
T TIGR00491 53 -----GICG-----DL-LK--KFKIRLK-IPGLLFIDTPGHEA----------------FTNLRKRGGALADLAILIVDI 102 (590)
T ss_pred -----cccc-----cc-cc--ccccccc-cCcEEEEECCCcHh----------------HHHHHHHHHhhCCEEEEEEEC
Confidence 0000 00 00 1122211 35799999999621 224556677777877776643
Q ss_pred cCCcCcHHHHHHHHHhCcCCCeEEEEecCCCcc
Q 004351 182 CSDWSNATTRRVVMQIDPELKRTIIVSTKLDTK 214 (759)
Q Consensus 182 ~~D~~~~~~l~lar~~Dp~g~RTIgVlTK~D~~ 214 (759)
...+ .....+.+..+...+...|.|+||.|+.
T Consensus 103 ~~g~-~~qt~e~i~~l~~~~vpiIVv~NK~Dl~ 134 (590)
T TIGR00491 103 NEGF-KPQTQEALNILRMYKTPFVVAANKIDRI 134 (590)
T ss_pred CcCC-CHhHHHHHHHHHHcCCCEEEEEECCCcc
Confidence 3222 2233343344444567899999999985
No 85
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=98.20 E-value=3.4e-06 Score=82.22 Aligned_cols=21 Identities=38% Similarity=0.449 Sum_probs=19.5
Q ss_pred EEeccCCchHHHHHHHhCCcc
Q 004351 29 VVGHQTDGKSALVEALMGFQF 49 (759)
Q Consensus 29 VVG~QSsGKSSLLEAL~G~~f 49 (759)
++|++++|||||+++|+|..+
T Consensus 1 iiG~~~~GKStll~~l~~~~~ 21 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP 21 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc
Confidence 589999999999999999876
No 86
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=98.20 E-value=8.3e-06 Score=78.54 Aligned_cols=68 Identities=13% Similarity=0.156 Sum_probs=41.7
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCC--c--CcHHHHHHHHHhCcCCCeEEEE
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSD--W--SNATTRRVVMQIDPELKRTIIV 207 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D--~--~~~~~l~lar~~Dp~g~RTIgV 207 (759)
..+.|+|+||... ...+...|++..+.+++++-.... + .......+.+.....+...+.|
T Consensus 43 ~~~~i~D~~G~~~----------------~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv 106 (158)
T cd00878 43 VSFTVWDVGGQDK----------------IRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIF 106 (158)
T ss_pred EEEEEEECCCChh----------------hHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEE
Confidence 4689999999632 124556777777777765533221 1 1111123334344567889999
Q ss_pred ecCCCccc
Q 004351 208 STKLDTKI 215 (759)
Q Consensus 208 lTK~D~~~ 215 (759)
+||.|+..
T Consensus 107 ~nK~D~~~ 114 (158)
T cd00878 107 ANKQDLPG 114 (158)
T ss_pred eeccCCcc
Confidence 99999863
No 87
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=98.20 E-value=6.2e-06 Score=79.80 Aligned_cols=64 Identities=17% Similarity=0.219 Sum_probs=42.0
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCc----HHHHHHHHHhCcCCCeEEEEe
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSN----ATTRRVVMQIDPELKRTIIVS 208 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~----~~~l~lar~~Dp~g~RTIgVl 208 (759)
.+.++|+||. .....|...|+.+.+.+++++... +..+ ..++...+... .+...|.|.
T Consensus 53 ~l~i~Dt~G~----------------~~~~~~~~~~~~~~d~ii~v~d~~-~~~s~~~~~~~~~~~~~~~-~~~p~ilv~ 114 (164)
T cd04101 53 ELFIFDSAGQ----------------ELYSDMVSNYWESPSVFILVYDVS-NKASFENCSRWVNKVRTAS-KHMPGVLVG 114 (164)
T ss_pred EEEEEECCCH----------------HHHHHHHHHHhCCCCEEEEEEECc-CHHHHHHHHHHHHHHHHhC-CCCCEEEEE
Confidence 5778999995 123467888998888777766432 2221 22344444444 347899999
Q ss_pred cCCCcc
Q 004351 209 TKLDTK 214 (759)
Q Consensus 209 TK~D~~ 214 (759)
||.|+.
T Consensus 115 nK~Dl~ 120 (164)
T cd04101 115 NKMDLA 120 (164)
T ss_pred ECcccc
Confidence 999985
No 88
>CHL00189 infB translation initiation factor 2; Provisional
Probab=98.19 E-value=7.9e-06 Score=97.94 Aligned_cols=117 Identities=21% Similarity=0.327 Sum_probs=74.5
Q ss_pred CCCEEEEEeccCCchHHHHHHHhCCccceecCccccccceEEEEeeCCCCCCCceEEecCCCCCCcccccChHHHHHHHH
Q 004351 23 DAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEIQSFIE 102 (759)
Q Consensus 23 ~lPqIVVVG~QSsGKSSLLEAL~G~~fp~~g~g~cTR~P~~l~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~l~~~Ie 102 (759)
..|.|+|+|+.++|||||+++|.+-.+.....+..| ...
T Consensus 243 r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiT--------------------q~i--------------------- 281 (742)
T CHL00189 243 RPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGIT--------------------QKI--------------------- 281 (742)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhccCccccCCccc--------------------ccc---------------------
Confidence 568999999999999999999988776521100000 000
Q ss_pred HHHhhhhhccCCCccccceEEEEEEe-cCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecc
Q 004351 103 AENMRLERESNSNQFSAKEIIIKVEF-KYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLED 181 (759)
Q Consensus 103 ~~~~~l~~~~~~~~fS~d~I~leI~~-p~~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~ 181 (759)
..+ .+.+.. .....++|+||||.. ....|...|+...+.+||+| +
T Consensus 282 ------------~~~-----~v~~~~~~~~~kItfiDTPGhe----------------~F~~mr~rg~~~aDiaILVV-D 327 (742)
T CHL00189 282 ------------GAY-----EVEFEYKDENQKIVFLDTPGHE----------------AFSSMRSRGANVTDIAILII-A 327 (742)
T ss_pred ------------ceE-----EEEEEecCCceEEEEEECCcHH----------------HHHHHHHHHHHHCCEEEEEE-E
Confidence 001 111111 123578999999962 12356667888888787776 4
Q ss_pred cCCcCcHHHHHHHHHhCcCCCeEEEEecCCCcc
Q 004351 182 CSDWSNATTRRVVMQIDPELKRTIIVSTKLDTK 214 (759)
Q Consensus 182 ~~D~~~~~~l~lar~~Dp~g~RTIgVlTK~D~~ 214 (759)
+.+-...+..+.++.+...+.+.|.|+||+|+.
T Consensus 328 A~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~ 360 (742)
T CHL00189 328 ADDGVKPQTIEAINYIQAANVPIIVAINKIDKA 360 (742)
T ss_pred CcCCCChhhHHHHHHHHhcCceEEEEEECCCcc
Confidence 433333444455555556678899999999985
No 89
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=98.18 E-value=1.8e-05 Score=78.93 Aligned_cols=39 Identities=26% Similarity=0.385 Sum_probs=30.0
Q ss_pred HHHHHHhhhhcCCCCCCCEEEEEeccCCchHHHHHHHhCCccc
Q 004351 8 YNELHGLAQELETPFDAPAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 8 ~n~L~~l~~~~~~~i~lPqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
+|=|..++ ....-+.|+++|..++|||||+++|+|-.+.
T Consensus 7 ~~~~~~~~----~~~~~~ki~ilG~~~~GKStLi~~l~~~~~~ 45 (190)
T cd00879 7 YNVLSSLG----LYNKEAKILFLGLDNAGKTTLLHMLKDDRLA 45 (190)
T ss_pred HHHHHHhh----cccCCCEEEEECCCCCCHHHHHHHHhcCCCc
Confidence 33344444 3456789999999999999999999986653
No 90
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=98.18 E-value=1.3e-05 Score=77.23 Aligned_cols=66 Identities=18% Similarity=0.161 Sum_probs=41.5
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCc----HHHHHHHHHhCcCCCeEEEE
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSN----ATTRRVVMQIDPELKRTIIV 207 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~----~~~l~lar~~Dp~g~RTIgV 207 (759)
..+.|+|+||.. ....+...|+++.+.+++++...+ ... ..++...+... .+...|.|
T Consensus 51 ~~~~i~D~~G~~----------------~~~~~~~~~~~~~~~~v~v~d~~~-~~s~~~l~~~~~~~~~~~-~~~p~iiv 112 (162)
T cd04106 51 VRLMLWDTAGQE----------------EFDAITKAYYRGAQACILVFSTTD-RESFEAIESWKEKVEAEC-GDIPMVLV 112 (162)
T ss_pred EEEEEeeCCchH----------------HHHHhHHHHhcCCCEEEEEEECCC-HHHHHHHHHHHHHHHHhC-CCCCEEEE
Confidence 358899999941 234667889988888777764321 111 11233333322 35789999
Q ss_pred ecCCCccc
Q 004351 208 STKLDTKI 215 (759)
Q Consensus 208 lTK~D~~~ 215 (759)
.||.|+..
T Consensus 113 ~nK~Dl~~ 120 (162)
T cd04106 113 QTKIDLLD 120 (162)
T ss_pred EEChhccc
Confidence 99999864
No 91
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=98.17 E-value=8.3e-06 Score=83.52 Aligned_cols=80 Identities=13% Similarity=0.170 Sum_probs=44.9
Q ss_pred ccccceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHH--HHHH
Q 004351 116 QFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNAT--TRRV 193 (759)
Q Consensus 116 ~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~--~l~l 193 (759)
+++.+.....++.. ...+.|+||||... ....+ ..+++..+.+|+++.....+..+. ...+
T Consensus 62 g~T~~~~~~~~~~~-~~~~~liDTpG~~~---------------~~~~~-~~~~~~ad~~llVvD~~~~~~~~~~~~~~~ 124 (208)
T cd04166 62 GITIDVAYRYFSTP-KRKFIIADTPGHEQ---------------YTRNM-VTGASTADLAILLVDARKGVLEQTRRHSYI 124 (208)
T ss_pred CcCeecceeEEecC-CceEEEEECCcHHH---------------HHHHH-HHhhhhCCEEEEEEECCCCccHhHHHHHHH
Confidence 45555555555443 45789999999721 11122 346677777776664333332221 2334
Q ss_pred HHHhCcCCCeEEEEecCCCcc
Q 004351 194 VMQIDPELKRTIIVSTKLDTK 214 (759)
Q Consensus 194 ar~~Dp~g~RTIgVlTK~D~~ 214 (759)
++... ..+.|+|+||.|+.
T Consensus 125 ~~~~~--~~~iIvviNK~D~~ 143 (208)
T cd04166 125 LSLLG--IRHVVVAVNKMDLV 143 (208)
T ss_pred HHHcC--CCcEEEEEEchhcc
Confidence 44432 13578899999985
No 92
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=98.17 E-value=1.6e-05 Score=76.74 Aligned_cols=68 Identities=21% Similarity=0.082 Sum_probs=43.4
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCc---HHHHHHHHHhCcCCCeEEEEe
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSN---ATTRRVVMQIDPELKRTIIVS 208 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~---~~~l~lar~~Dp~g~RTIgVl 208 (759)
..+.|+|+||.. ....+...|+++.+.+|+++...+...- ..++...+.+...+...+.|.
T Consensus 49 ~~l~l~D~~G~~----------------~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~ 112 (161)
T cd04113 49 VKLQIWDTAGQE----------------RFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVG 112 (161)
T ss_pred EEEEEEECcchH----------------HHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEE
Confidence 357899999962 1235677888888888877643321111 123344444444467899999
Q ss_pred cCCCccc
Q 004351 209 TKLDTKI 215 (759)
Q Consensus 209 TK~D~~~ 215 (759)
||.|+..
T Consensus 113 nK~D~~~ 119 (161)
T cd04113 113 NKSDLAD 119 (161)
T ss_pred Echhcch
Confidence 9999864
No 93
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=98.17 E-value=1.4e-05 Score=80.08 Aligned_cols=29 Identities=21% Similarity=0.351 Sum_probs=25.0
Q ss_pred CCCCEEEEEeccCCchHHHHHHHhCCccc
Q 004351 22 FDAPAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 22 i~lPqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
-.-+.|+++|..++||||+++.|+|-.|.
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~ 43 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLA 43 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCc
Confidence 33488999999999999999999987653
No 94
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=98.16 E-value=1.7e-05 Score=77.12 Aligned_cols=66 Identities=17% Similarity=0.146 Sum_probs=42.7
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCc----HHHHHHHHHhCcCCCeEEEEe
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSN----ATTRRVVMQIDPELKRTIIVS 208 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~----~~~l~lar~~Dp~g~RTIgVl 208 (759)
.+.|+|+||.. ....+...|+++.+.+|+++...+ ..+ ..++...+.....+...|.|.
T Consensus 52 ~~~i~D~~G~~----------------~~~~~~~~~~~~~~~ii~v~d~~~-~~s~~~l~~~~~~~~~~~~~~~~~iiv~ 114 (166)
T cd01869 52 KLQIWDTAGQE----------------RFRTITSSYYRGAHGIIIVYDVTD-QESFNNVKQWLQEIDRYASENVNKLLVG 114 (166)
T ss_pred EEEEEECCCcH----------------hHHHHHHHHhCcCCEEEEEEECcC-HHHHHhHHHHHHHHHHhCCCCCcEEEEE
Confidence 46789999942 123577788888888887774322 111 123344444444567889999
Q ss_pred cCCCccc
Q 004351 209 TKLDTKI 215 (759)
Q Consensus 209 TK~D~~~ 215 (759)
||.|+..
T Consensus 115 nK~Dl~~ 121 (166)
T cd01869 115 NKCDLTD 121 (166)
T ss_pred EChhccc
Confidence 9999853
No 95
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=98.16 E-value=1e-05 Score=95.26 Aligned_cols=115 Identities=21% Similarity=0.279 Sum_probs=73.0
Q ss_pred CCCEEEEEeccCCchHHHHHHHhCCccceecCccccccceEEEEeeCCCCCCCceEEecCCCCCCcccccChHHHHHHHH
Q 004351 23 DAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEIQSFIE 102 (759)
Q Consensus 23 ~lPqIVVVG~QSsGKSSLLEAL~G~~fp~~g~g~cTR~P~~l~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~l~~~Ie 102 (759)
..|.|+++|+.++||||||++|.+-.|.....+..| ...
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT--------------------~~i--------------------- 124 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGIT--------------------QHI--------------------- 124 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcccccCCcee--------------------ecc---------------------
Confidence 458999999999999999999998777532111100 000
Q ss_pred HHHhhhhhccCCCccccceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeeccc
Q 004351 103 AENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDC 182 (759)
Q Consensus 103 ~~~~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~ 182 (759)
+. ..+..++...++|+||||... ...|...+....+.+||+| ++
T Consensus 125 -------------g~------~~v~~~~~~~i~~iDTPGhe~----------------F~~~r~rga~~aDiaILVV-da 168 (587)
T TIGR00487 125 -------------GA------YHVENEDGKMITFLDTPGHEA----------------FTSMRARGAKVTDIVVLVV-AA 168 (587)
T ss_pred -------------eE------EEEEECCCcEEEEEECCCCcc----------------hhhHHHhhhccCCEEEEEE-EC
Confidence 00 011112222689999999632 1245556777777777776 44
Q ss_pred CCcCcHHHHHHHHHhCcCCCeEEEEecCCCcc
Q 004351 183 SDWSNATTRRVVMQIDPELKRTIIVSTKLDTK 214 (759)
Q Consensus 183 ~D~~~~~~l~lar~~Dp~g~RTIgVlTK~D~~ 214 (759)
++....++.+.++.+...+...|.|+||.|+.
T Consensus 169 ~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~ 200 (587)
T TIGR00487 169 DDGVMPQTIEAISHAKAANVPIIVAINKIDKP 200 (587)
T ss_pred CCCCCHhHHHHHHHHHHcCCCEEEEEECcccc
Confidence 44334445555555555677899999999984
No 96
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=98.14 E-value=1.5e-05 Score=76.77 Aligned_cols=67 Identities=21% Similarity=0.217 Sum_probs=42.5
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcH----HH-HHHHHHhCcCCCeEEE
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNA----TT-RRVVMQIDPELKRTII 206 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~----~~-l~lar~~Dp~g~RTIg 206 (759)
..+.|+||||... ...+...|++..+.+|+++... +..+- .+ ..+.+..+..+...|.
T Consensus 50 ~~~~i~Dt~G~~~----------------~~~~~~~~~~~~~~~ilv~d~~-~~~s~~~~~~~~~~~~~~~~~~~~piii 112 (164)
T cd04145 50 AILDILDTAGQEE----------------FSAMREQYMRTGEGFLLVFSVT-DRGSFEEVDKFHTQILRVKDRDEFPMIL 112 (164)
T ss_pred EEEEEEECCCCcc----------------hhHHHHHHHhhCCEEEEEEECC-CHHHHHHHHHHHHHHHHHhCCCCCCEEE
Confidence 3577899999632 2357778888888888776422 22211 11 1233334455678999
Q ss_pred EecCCCccc
Q 004351 207 VSTKLDTKI 215 (759)
Q Consensus 207 VlTK~D~~~ 215 (759)
|+||.|+..
T Consensus 113 v~NK~Dl~~ 121 (164)
T cd04145 113 VGNKADLEH 121 (164)
T ss_pred EeeCccccc
Confidence 999999853
No 97
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=98.14 E-value=1.7e-05 Score=76.56 Aligned_cols=26 Identities=27% Similarity=0.502 Sum_probs=24.0
Q ss_pred EEEEEeccCCchHHHHHHHhCCccce
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFNH 51 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp~ 51 (759)
.|+|+|+.++|||||+++|++..+++
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~~~ 28 (163)
T cd01860 3 KLVLLGDSSVGKSSLVLRFVKNEFSE 28 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCC
Confidence 58999999999999999999999863
No 98
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=98.12 E-value=1.4e-05 Score=81.97 Aligned_cols=66 Identities=23% Similarity=0.271 Sum_probs=44.0
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHHHHHhCcCCCeEEEEecCC
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKL 211 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~RTIgVlTK~ 211 (759)
..++|+||||...- ...+..|+...+.++++|-.... ......++.+.+...+...+.|+||.
T Consensus 71 ~~i~iiDtpG~~~f----------------~~~~~~~~~~aD~~llVvD~~~~-~~~~~~~~~~~~~~~~~p~iiviNK~ 133 (213)
T cd04167 71 YLFNIIDTPGHVNF----------------MDEVAAALRLSDGVVLVVDVVEG-VTSNTERLIRHAILEGLPIVLVINKI 133 (213)
T ss_pred EEEEEEECCCCcch----------------HHHHHHHHHhCCEEEEEEECCCC-CCHHHHHHHHHHHHcCCCEEEEEECc
Confidence 46899999998431 13456777788888877743322 22233444444444567899999999
Q ss_pred Ccc
Q 004351 212 DTK 214 (759)
Q Consensus 212 D~~ 214 (759)
|++
T Consensus 134 D~~ 136 (213)
T cd04167 134 DRL 136 (213)
T ss_pred ccC
Confidence 986
No 99
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=98.11 E-value=1.4e-05 Score=85.51 Aligned_cols=80 Identities=20% Similarity=0.181 Sum_probs=50.0
Q ss_pred cccceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHHHHH
Q 004351 117 FSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQ 196 (759)
Q Consensus 117 fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~ 196 (759)
+|-+.....+++.+ ..++||||||...- . .-+..+++..+.+|++| ++.+-......++.+.
T Consensus 50 iti~~~~~~~~~~~-~~i~liDTPG~~df------------~----~~~~~~l~~aD~ailVV-Da~~g~~~~t~~~~~~ 111 (270)
T cd01886 50 ITIQSAATTCFWKD-HRINIIDTPGHVDF------------T----IEVERSLRVLDGAVAVF-DAVAGVEPQTETVWRQ 111 (270)
T ss_pred cCeeccEEEEEECC-EEEEEEECCCcHHH------------H----HHHHHHHHHcCEEEEEE-ECCCCCCHHHHHHHHH
Confidence 34333344555443 47899999997421 1 23456777777777655 4433234444555665
Q ss_pred hCcCCCeEEEEecCCCcc
Q 004351 197 IDPELKRTIIVSTKLDTK 214 (759)
Q Consensus 197 ~Dp~g~RTIgVlTK~D~~ 214 (759)
+...+.+.|+|+||.|+.
T Consensus 112 ~~~~~~p~ivviNK~D~~ 129 (270)
T cd01886 112 ADRYNVPRIAFVNKMDRT 129 (270)
T ss_pred HHHcCCCEEEEEECCCCC
Confidence 556678899999999985
No 100
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=98.11 E-value=1e-05 Score=84.91 Aligned_cols=66 Identities=24% Similarity=0.243 Sum_probs=44.4
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHHHHHhCcCCCeEEEEecCC
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKL 211 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~RTIgVlTK~ 211 (759)
..++|+||||...- ...+..|++..+.+|++|...... ......+.+.++..+.+.|.|+||.
T Consensus 64 ~~i~liDTPG~~~f----------------~~~~~~~l~~aD~~IlVvd~~~g~-~~~~~~~~~~~~~~~~P~iivvNK~ 126 (237)
T cd04168 64 TKVNLIDTPGHMDF----------------IAEVERSLSVLDGAILVISAVEGV-QAQTRILWRLLRKLNIPTIIFVNKI 126 (237)
T ss_pred EEEEEEeCCCccch----------------HHHHHHHHHHhCeEEEEEeCCCCC-CHHHHHHHHHHHHcCCCEEEEEECc
Confidence 47999999999431 133566778888888777544332 2333444444444578899999999
Q ss_pred Ccc
Q 004351 212 DTK 214 (759)
Q Consensus 212 D~~ 214 (759)
|+.
T Consensus 127 D~~ 129 (237)
T cd04168 127 DRA 129 (237)
T ss_pred ccc
Confidence 985
No 101
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=98.10 E-value=1.3e-05 Score=78.15 Aligned_cols=65 Identities=15% Similarity=0.169 Sum_probs=42.5
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcC---cHHHHHHHHHhCcCCCeEEEEec
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWS---NATTRRVVMQIDPELKRTIIVST 209 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~---~~~~l~lar~~Dp~g~RTIgVlT 209 (759)
.+.|.||||-. ....+...|+++.+.+|+++...+... -..++...++..+ ....|.|+|
T Consensus 50 ~~~i~Dt~G~~----------------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~p~ivv~n 112 (161)
T cd04124 50 LVDFWDTAGQE----------------RFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRP-EIPCIVVAN 112 (161)
T ss_pred EEEEEeCCCch----------------hhhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEE
Confidence 56789999952 233677889999988887764332111 1223444455443 468999999
Q ss_pred CCCcc
Q 004351 210 KLDTK 214 (759)
Q Consensus 210 K~D~~ 214 (759)
|.|+.
T Consensus 113 K~Dl~ 117 (161)
T cd04124 113 KIDLD 117 (161)
T ss_pred CccCc
Confidence 99983
No 102
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.10 E-value=2.3e-05 Score=78.71 Aligned_cols=66 Identities=17% Similarity=0.141 Sum_probs=44.3
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCc----HHHHHHHHHhCcCCCeEEEEe
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSN----ATTRRVVMQIDPELKRTIIVS 208 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~----~~~l~lar~~Dp~g~RTIgVl 208 (759)
.+.|+|+||-. ....+...|++..+.+|+++... +..+ ..++..+++..+.+...|.|+
T Consensus 51 ~~~i~Dt~G~~----------------~~~~~~~~~~~~ad~~i~v~D~~-~~~s~~~~~~~~~~i~~~~~~~~piiiv~ 113 (191)
T cd04112 51 KLQIWDTAGQE----------------RFRSVTHAYYRDAHALLLLYDIT-NKASFDNIRAWLTEIKEYAQEDVVIMLLG 113 (191)
T ss_pred EEEEEeCCCcH----------------HHHHhhHHHccCCCEEEEEEECC-CHHHHHHHHHHHHHHHHhCCCCCcEEEEE
Confidence 47799999941 12356677888888777666422 2111 224556667777778899999
Q ss_pred cCCCccc
Q 004351 209 TKLDTKI 215 (759)
Q Consensus 209 TK~D~~~ 215 (759)
||.|+..
T Consensus 114 NK~Dl~~ 120 (191)
T cd04112 114 NKADMSG 120 (191)
T ss_pred Ecccchh
Confidence 9999853
No 103
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=98.10 E-value=2.2e-05 Score=75.57 Aligned_cols=25 Identities=32% Similarity=0.445 Sum_probs=22.8
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
+|+++|..++|||||+++|++..+.
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~ 25 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELV 25 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcc
Confidence 5899999999999999999988764
No 104
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=98.09 E-value=1.9e-05 Score=80.60 Aligned_cols=23 Identities=43% Similarity=0.635 Sum_probs=21.0
Q ss_pred EEEEEeccCCchHHHHHHHhCCc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQ 48 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~ 48 (759)
.|+++|+.++|||||+++|+|..
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~~ 24 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGVW 24 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999874
No 105
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=98.08 E-value=1.9e-05 Score=75.56 Aligned_cols=67 Identities=19% Similarity=0.195 Sum_probs=42.3
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccC--CcCcH-HH-HHHHHHhCcCCCeEEEEe
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCS--DWSNA-TT-RRVVMQIDPELKRTIIVS 208 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~--D~~~~-~~-l~lar~~Dp~g~RTIgVl 208 (759)
.+.++|+||-.. ...|...|+++.+.+++++...+ .+.+. .+ ..+.+..+..+...|.|.
T Consensus 50 ~~~i~Dt~G~~~----------------~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~ 113 (162)
T cd04138 50 LLDILDTAGQEE----------------YSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVG 113 (162)
T ss_pred EEEEEECCCCcc----------------hHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 466899999522 33677789999888887764221 11111 11 223333445577899999
Q ss_pred cCCCccc
Q 004351 209 TKLDTKI 215 (759)
Q Consensus 209 TK~D~~~ 215 (759)
||.|+..
T Consensus 114 nK~Dl~~ 120 (162)
T cd04138 114 NKCDLAA 120 (162)
T ss_pred ECccccc
Confidence 9999853
No 106
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=98.07 E-value=2.6e-05 Score=76.25 Aligned_cols=27 Identities=22% Similarity=0.577 Sum_probs=24.1
Q ss_pred CCCEEEEEeccCCchHHHHHHHhCCcc
Q 004351 23 DAPAVLVVGHQTDGKSALVEALMGFQF 49 (759)
Q Consensus 23 ~lPqIVVVG~QSsGKSSLLEAL~G~~f 49 (759)
.-..|+++|..++|||||+++|.|..+
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~ 39 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDI 39 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCC
Confidence 357899999999999999999998754
No 107
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=98.07 E-value=1.8e-05 Score=76.22 Aligned_cols=26 Identities=35% Similarity=0.321 Sum_probs=23.3
Q ss_pred CEEEEEeccCCchHHHHHHHhCCccc
Q 004351 25 PAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
..|+++|+.++|||||++.+++-.|.
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~ 27 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFV 27 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC
Confidence 47999999999999999999977664
No 108
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=98.06 E-value=1.9e-05 Score=73.91 Aligned_cols=26 Identities=35% Similarity=0.609 Sum_probs=23.9
Q ss_pred CEEEEEeccCCchHHHHHHHhCCccc
Q 004351 25 PAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
+.|+++|..++|||||+++|++..++
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~ 27 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFI 27 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCc
Confidence 57999999999999999999998855
No 109
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=98.06 E-value=1.5e-05 Score=78.18 Aligned_cols=67 Identities=18% Similarity=0.129 Sum_probs=41.7
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCc---HHHHHHHHHh-CcCCCeEEEEe
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSN---ATTRRVVMQI-DPELKRTIIVS 208 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~---~~~l~lar~~-Dp~g~RTIgVl 208 (759)
.+.|+|+||.... -..+...|+++.+.+|+++...+...- ..++..++.. .......|.|.
T Consensus 52 ~~~i~Dt~G~~~~---------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~ 116 (170)
T cd04115 52 KVQLWDTAGQERF---------------RKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVG 116 (170)
T ss_pred EEEEEeCCChHHH---------------HHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEE
Confidence 5779999995210 114677888899988887653321111 1233333333 23457899999
Q ss_pred cCCCcc
Q 004351 209 TKLDTK 214 (759)
Q Consensus 209 TK~D~~ 214 (759)
||.|+.
T Consensus 117 nK~Dl~ 122 (170)
T cd04115 117 NKCDLR 122 (170)
T ss_pred ECccch
Confidence 999985
No 110
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=98.06 E-value=2.1e-05 Score=76.34 Aligned_cols=67 Identities=21% Similarity=0.253 Sum_probs=42.1
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCC--cCc-HHHHH-HHHHhCcCCCeEEEE
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSD--WSN-ATTRR-VVMQIDPELKRTIIV 207 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D--~~~-~~~l~-lar~~Dp~g~RTIgV 207 (759)
..|.|+||||... ...+...|+++.+.+|+++...+. +.. ..+.. +.+.....+...|.|
T Consensus 49 ~~l~i~Dt~G~~~----------------~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv 112 (164)
T cd04175 49 CMLEILDTAGTEQ----------------FTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILV 112 (164)
T ss_pred EEEEEEECCCccc----------------chhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence 4678999999632 225666788899988887642211 111 11222 223334456789999
Q ss_pred ecCCCcc
Q 004351 208 STKLDTK 214 (759)
Q Consensus 208 lTK~D~~ 214 (759)
.||.|+.
T Consensus 113 ~nK~Dl~ 119 (164)
T cd04175 113 GNKCDLE 119 (164)
T ss_pred EECCcch
Confidence 9999985
No 111
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=98.05 E-value=4.1e-05 Score=73.26 Aligned_cols=25 Identities=32% Similarity=0.503 Sum_probs=23.1
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.|+|+|..++||||++++|.+..++
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~ 26 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFN 26 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC
Confidence 5899999999999999999998875
No 112
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=98.05 E-value=2.7e-05 Score=75.35 Aligned_cols=25 Identities=32% Similarity=0.384 Sum_probs=23.3
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.|+|+|+.++|||||+++|.+..|+
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~ 26 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFV 26 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCC
Confidence 6899999999999999999988876
No 113
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=98.05 E-value=1.7e-05 Score=73.14 Aligned_cols=69 Identities=25% Similarity=0.198 Sum_probs=42.5
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHH----HHHHHhCcCCCeEEEE
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTR----RVVMQIDPELKRTIIV 207 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l----~lar~~Dp~g~RTIgV 207 (759)
..++++|+||..... .....+++..+.+|+++............ .........+...++|
T Consensus 45 ~~~~l~D~~g~~~~~----------------~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv 108 (157)
T cd00882 45 VKLQIWDTAGQERFR----------------SLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILV 108 (157)
T ss_pred EEEEEEecCChHHHH----------------hHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEE
Confidence 468899999985421 22256677777777666433221111111 2333445567899999
Q ss_pred ecCCCcccc
Q 004351 208 STKLDTKIP 216 (759)
Q Consensus 208 lTK~D~~~~ 216 (759)
+||.|+...
T Consensus 109 ~nk~D~~~~ 117 (157)
T cd00882 109 GNKIDLPEE 117 (157)
T ss_pred Eeccccccc
Confidence 999998644
No 114
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.05 E-value=2e-05 Score=80.34 Aligned_cols=67 Identities=13% Similarity=0.164 Sum_probs=40.8
Q ss_pred CCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHHHHHhCcCCC-eEEEEec
Q 004351 131 CPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELK-RTIIVST 209 (759)
Q Consensus 131 ~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~-RTIgVlT 209 (759)
...++||||||... .+..+.. -+...+.++++|.+... ......++++.+...|. +.|+|+|
T Consensus 64 ~~~i~~iDtPG~~~---------------~~~~~~~-~~~~~D~~ilVvda~~g-~~~~~~~~~~~~~~~~~~~iIvviN 126 (195)
T cd01884 64 NRHYAHVDCPGHAD---------------YIKNMIT-GAAQMDGAILVVSATDG-PMPQTREHLLLARQVGVPYIVVFLN 126 (195)
T ss_pred CeEEEEEECcCHHH---------------HHHHHHH-HhhhCCEEEEEEECCCC-CcHHHHHHHHHHHHcCCCcEEEEEe
Confidence 35689999999831 1223322 34466666665543332 33445555555555665 4789999
Q ss_pred CCCcc
Q 004351 210 KLDTK 214 (759)
Q Consensus 210 K~D~~ 214 (759)
|+|+.
T Consensus 127 K~D~~ 131 (195)
T cd01884 127 KADMV 131 (195)
T ss_pred CCCCC
Confidence 99986
No 115
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=98.05 E-value=2.4e-05 Score=76.81 Aligned_cols=67 Identities=10% Similarity=0.186 Sum_probs=40.7
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHHHHHh--CcCCCeEEEEec
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQI--DPELKRTIIVST 209 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~~--Dp~g~RTIgVlT 209 (759)
..|.|+|+||-.. .+.+...|+++.+.+|+++-..+...-..+.....++ +..+...|.|.|
T Consensus 44 ~~l~i~Dt~G~~~----------------~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~N 107 (164)
T cd04162 44 AIMELLEIGGSQN----------------LRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLAN 107 (164)
T ss_pred eEEEEEECCCCcc----------------hhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEe
Confidence 3588999999632 1245567898999888766432211111122222222 225788999999
Q ss_pred CCCcc
Q 004351 210 KLDTK 214 (759)
Q Consensus 210 K~D~~ 214 (759)
|.|+.
T Consensus 108 K~Dl~ 112 (164)
T cd04162 108 KQDLP 112 (164)
T ss_pred CcCCc
Confidence 99984
No 116
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=98.04 E-value=2.4e-05 Score=77.31 Aligned_cols=25 Identities=32% Similarity=0.521 Sum_probs=23.5
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.||+||+.++|||||++++++-.|+
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~ 26 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFD 26 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 5899999999999999999998886
No 117
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=98.03 E-value=3.2e-05 Score=76.16 Aligned_cols=27 Identities=22% Similarity=0.336 Sum_probs=24.7
Q ss_pred CEEEEEeccCCchHHHHHHHhCCccce
Q 004351 25 PAVLVVGHQTDGKSALVEALMGFQFNH 51 (759)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~~fp~ 51 (759)
..||++|+.++|||||++.+++-.|+.
T Consensus 5 ~ki~ivG~~~vGKTsli~~~~~~~~~~ 31 (180)
T cd04127 5 IKFLALGDSGVGKTSFLYQYTDNKFNP 31 (180)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCc
Confidence 579999999999999999999988863
No 118
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=98.03 E-value=3.4e-05 Score=75.81 Aligned_cols=66 Identities=14% Similarity=0.165 Sum_probs=41.7
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCc-HHHHHHHH----HhCcCCCeEEE
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSN-ATTRRVVM----QIDPELKRTII 206 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~-~~~l~lar----~~Dp~g~RTIg 206 (759)
..+.++|+||-. ..+.+...|+++.+.+|+++- +++... ..+..... .....+...+.
T Consensus 43 ~~~~i~D~~G~~----------------~~~~~~~~~~~~a~~ii~V~D-~s~~~s~~~~~~~l~~l~~~~~~~~~pili 105 (167)
T cd04161 43 YEVCIFDLGGGA----------------NFRGIWVNYYAEAHGLVFVVD-SSDDDRVQEVKEILRELLQHPRVSGKPILV 105 (167)
T ss_pred EEEEEEECCCcH----------------HHHHHHHHHHcCCCEEEEEEE-CCchhHHHHHHHHHHHHHcCccccCCcEEE
Confidence 468899999952 133667889999988887663 332222 11222222 21224678999
Q ss_pred EecCCCcc
Q 004351 207 VSTKLDTK 214 (759)
Q Consensus 207 VlTK~D~~ 214 (759)
|+||.|+.
T Consensus 106 v~NK~Dl~ 113 (167)
T cd04161 106 LANKQDKK 113 (167)
T ss_pred EEeCCCCc
Confidence 99999984
No 119
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=98.03 E-value=2.2e-05 Score=95.15 Aligned_cols=74 Identities=15% Similarity=0.182 Sum_probs=43.7
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhc--CccceeEeecccCCcCcHHHHHHHHHhCcCCCeEEEEec
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQ--HREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVST 209 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~--~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~RTIgVlT 209 (759)
..+++|||||+..-....... ..-+.+...|+. .++.+ +.|.|+++... .+.+..++...|.++|.|+|
T Consensus 50 ~~i~lvDtPG~ysl~~~~~~~------s~~E~i~~~~l~~~~aD~v-I~VvDat~ler--~l~l~~ql~e~giPvIvVlN 120 (772)
T PRK09554 50 HQVTLVDLPGTYSLTTISSQT------SLDEQIACHYILSGDADLL-INVVDASNLER--NLYLTLQLLELGIPCIVALN 120 (772)
T ss_pred eEEEEEECCCccccccccccc------cHHHHHHHHHHhccCCCEE-EEEecCCcchh--hHHHHHHHHHcCCCEEEEEE
Confidence 358899999997643211100 111235566764 44444 55556544332 23344555556889999999
Q ss_pred CCCcc
Q 004351 210 KLDTK 214 (759)
Q Consensus 210 K~D~~ 214 (759)
|.|+.
T Consensus 121 K~Dl~ 125 (772)
T PRK09554 121 MLDIA 125 (772)
T ss_pred chhhh
Confidence 99985
No 120
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=98.03 E-value=2e-05 Score=95.36 Aligned_cols=66 Identities=20% Similarity=0.246 Sum_probs=44.4
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHHHHHhCcCCCeEEEEecCC
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKL 211 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~RTIgVlTK~ 211 (759)
..++|+||||...- ..|...+++..+.+||+| +++|-...++.+.++.++..+...|+|+||+
T Consensus 337 ~~ItfiDTPGhe~F----------------~~m~~rga~~aDiaILVV-dAddGv~~qT~e~i~~a~~~~vPiIVviNKi 399 (787)
T PRK05306 337 GKITFLDTPGHEAF----------------TAMRARGAQVTDIVVLVV-AADDGVMPQTIEAINHAKAAGVPIIVAINKI 399 (787)
T ss_pred EEEEEEECCCCccc----------------hhHHHhhhhhCCEEEEEE-ECCCCCCHhHHHHHHHHHhcCCcEEEEEECc
Confidence 36899999996321 245566777777777766 4433333444455555555678899999999
Q ss_pred Ccc
Q 004351 212 DTK 214 (759)
Q Consensus 212 D~~ 214 (759)
|+.
T Consensus 400 Dl~ 402 (787)
T PRK05306 400 DKP 402 (787)
T ss_pred ccc
Confidence 984
No 121
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=98.02 E-value=3e-05 Score=74.49 Aligned_cols=67 Identities=16% Similarity=0.162 Sum_probs=41.8
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccC----CcCcHHHHHHHHHhCcCCCeEEEEe
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCS----DWSNATTRRVVMQIDPELKRTIIVS 208 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~----D~~~~~~l~lar~~Dp~g~RTIgVl 208 (759)
.+.|+|+||... ...+...|++..+.+++++...+ +........+.+..++.....|.|+
T Consensus 49 ~~~i~D~~g~~~----------------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~ 112 (164)
T cd04139 49 QLNILDTAGQED----------------YAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVG 112 (164)
T ss_pred EEEEEECCChhh----------------hhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 467899999632 22456678888888887764221 1111112233333345678899999
Q ss_pred cCCCccc
Q 004351 209 TKLDTKI 215 (759)
Q Consensus 209 TK~D~~~ 215 (759)
||.|+..
T Consensus 113 NK~D~~~ 119 (164)
T cd04139 113 NKCDLED 119 (164)
T ss_pred Ecccccc
Confidence 9999853
No 122
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=98.02 E-value=3.3e-05 Score=74.70 Aligned_cols=66 Identities=12% Similarity=0.194 Sum_probs=41.5
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCc-----HHHHHHHHHhCcCCCeEEE
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSN-----ATTRRVVMQIDPELKRTII 206 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~-----~~~l~lar~~Dp~g~RTIg 206 (759)
..+.|+|+||... .+.+...|++..+.+|+++. +++..+ .....+.+.....+...+.
T Consensus 43 ~~~~i~Dt~G~~~----------------~~~~~~~~~~~~~~ii~v~d-~~~~~~~~~~~~~~~~~~~~~~~~~~piii 105 (158)
T cd04151 43 LKFQVWDLGGQTS----------------IRPYWRCYYSNTDAIIYVVD-STDRDRLGTAKEELHAMLEEEELKGAVLLV 105 (158)
T ss_pred EEEEEEECCCCHH----------------HHHHHHHHhcCCCEEEEEEE-CCCHHHHHHHHHHHHHHHhchhhcCCcEEE
Confidence 3578899999732 23566788888888877664 322211 1112233333334678999
Q ss_pred EecCCCcc
Q 004351 207 VSTKLDTK 214 (759)
Q Consensus 207 VlTK~D~~ 214 (759)
|+||.|+.
T Consensus 106 v~nK~Dl~ 113 (158)
T cd04151 106 FANKQDMP 113 (158)
T ss_pred EEeCCCCC
Confidence 99999985
No 123
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=98.02 E-value=2.4e-05 Score=78.67 Aligned_cols=22 Identities=41% Similarity=0.582 Sum_probs=20.6
Q ss_pred EEEEEeccCCchHHHHHHHhCC
Q 004351 26 AVLVVGHQTDGKSALVEALMGF 47 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~ 47 (759)
.|+++|+.++|||||+++|++.
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~ 23 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEI 23 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhc
Confidence 5899999999999999999975
No 124
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=98.01 E-value=5.3e-05 Score=80.99 Aligned_cols=72 Identities=15% Similarity=0.210 Sum_probs=45.8
Q ss_pred EEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHHHHHhCcCCCeE
Q 004351 125 KVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRT 204 (759)
Q Consensus 125 eI~~p~~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~RT 204 (759)
.+++. ...+.|+||||... ....+..+++..+.+|+++.+...+. .....+.+..+..+...
T Consensus 65 ~~~~~-~~~i~liDTPG~~d----------------f~~~~~~~l~~aD~~IlVvda~~g~~-~~~~~i~~~~~~~~~P~ 126 (267)
T cd04169 65 QFEYR-DCVINLLDTPGHED----------------FSEDTYRTLTAVDSAVMVIDAAKGVE-PQTRKLFEVCRLRGIPI 126 (267)
T ss_pred EEeeC-CEEEEEEECCCchH----------------HHHHHHHHHHHCCEEEEEEECCCCcc-HHHHHHHHHHHhcCCCE
Confidence 44443 35789999999732 11334566778888887765443333 23334445555567789
Q ss_pred EEEecCCCcc
Q 004351 205 IIVSTKLDTK 214 (759)
Q Consensus 205 IgVlTK~D~~ 214 (759)
|+|+||.|+.
T Consensus 127 iivvNK~D~~ 136 (267)
T cd04169 127 ITFINKLDRE 136 (267)
T ss_pred EEEEECCccC
Confidence 9999999974
No 125
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=98.01 E-value=4.1e-05 Score=77.60 Aligned_cols=27 Identities=26% Similarity=0.390 Sum_probs=24.5
Q ss_pred CCEEEEEeccCCchHHHHHHHhCCccc
Q 004351 24 APAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 24 lPqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
...|||||+.++|||||++.+.+-.|.
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~~ 32 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTFS 32 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 468999999999999999999987775
No 126
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=98.01 E-value=2e-05 Score=83.92 Aligned_cols=66 Identities=20% Similarity=0.249 Sum_probs=42.7
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHHHHHhCcCCCeEEEEecCC
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKL 211 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~RTIgVlTK~ 211 (759)
..++||||||... ....+..++...+.+|+++.+. +........+.+.++-.+...+.|+||.
T Consensus 64 ~~i~liDtPG~~~----------------f~~~~~~~l~~aD~~i~Vvd~~-~g~~~~~~~~~~~~~~~~~p~iivvNK~ 126 (268)
T cd04170 64 HKINLIDTPGYAD----------------FVGETRAALRAADAALVVVSAQ-SGVEVGTEKLWEFADEAGIPRIIFINKM 126 (268)
T ss_pred EEEEEEECcCHHH----------------HHHHHHHHHHHCCEEEEEEeCC-CCCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 5799999999842 1133455666777777665433 2223334445555555677899999999
Q ss_pred Ccc
Q 004351 212 DTK 214 (759)
Q Consensus 212 D~~ 214 (759)
|+.
T Consensus 127 D~~ 129 (268)
T cd04170 127 DRE 129 (268)
T ss_pred ccC
Confidence 985
No 127
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=98.01 E-value=3.1e-05 Score=73.40 Aligned_cols=24 Identities=29% Similarity=0.522 Sum_probs=21.5
Q ss_pred EEEEEeccCCchHHHHHHHhCCcc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQF 49 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~f 49 (759)
.|++||+.++|||||+++|+|..+
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~ 25 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI 25 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc
Confidence 689999999999999999987643
No 128
>PRK04004 translation initiation factor IF-2; Validated
Probab=98.00 E-value=3.3e-05 Score=91.07 Aligned_cols=30 Identities=30% Similarity=0.608 Sum_probs=26.5
Q ss_pred CCCCCEEEEEeccCCchHHHHHHHhCCccc
Q 004351 21 PFDAPAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 21 ~i~lPqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
...-|.|+++|+.++||||||++|.|..+.
T Consensus 3 ~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~ 32 (586)
T PRK04004 3 KLRQPIVVVLGHVDHGKTTLLDKIRGTAVA 32 (586)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCcccc
Confidence 456799999999999999999999887654
No 129
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.00 E-value=3.9e-05 Score=82.62 Aligned_cols=82 Identities=21% Similarity=0.220 Sum_probs=49.0
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCcc-------------ceeEeecccCCcCcHHHHHHHHHhC
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHRE-------------FIILCLEDCSDWSNATTRRVVMQID 198 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~-------------~IIL~V~~~~D~~~~~~l~lar~~D 198 (759)
.+|+||||||++..-... ...+....-|++--..|+..+. +.+.++.++..--...+++..+++.
T Consensus 63 l~LtiiDTpGfGd~i~n~--~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls 140 (281)
T PF00735_consen 63 LNLTIIDTPGFGDNIDNS--DCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLS 140 (281)
T ss_dssp EEEEEEEEC-CSSSSTHC--HHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHT
T ss_pred eEEEEEeCCCccccccch--hhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhc
Confidence 489999999997643211 1122334455555556665222 2333444544334466788889887
Q ss_pred cCCCeEEEEecCCCcccc
Q 004351 199 PELKRTIIVSTKLDTKIP 216 (759)
Q Consensus 199 p~g~RTIgVlTK~D~~~~ 216 (759)
.. ...|-|+.|.|.+.+
T Consensus 141 ~~-vNvIPvIaKaD~lt~ 157 (281)
T PF00735_consen 141 KR-VNVIPVIAKADTLTP 157 (281)
T ss_dssp TT-SEEEEEESTGGGS-H
T ss_pred cc-ccEEeEEecccccCH
Confidence 64 779999999999854
No 130
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.00 E-value=4.6e-05 Score=76.11 Aligned_cols=65 Identities=20% Similarity=0.102 Sum_probs=42.7
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCc----HHHHHHHHHhCcCCCeEEEEe
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSN----ATTRRVVMQIDPELKRTIIVS 208 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~----~~~l~lar~~Dp~g~RTIgVl 208 (759)
.+.|+|+||... ...+...|+++.+.+|+++...+ ... ..++...+...+.....|+|.
T Consensus 50 ~~~i~Dt~g~~~----------------~~~~~~~~~~~~d~iilv~d~~~-~~s~~~i~~~~~~i~~~~~~~~~~ivv~ 112 (188)
T cd04125 50 KLQIWDTNGQER----------------FRSLNNSYYRGAHGYLLVYDVTD-QESFENLKFWINEINRYARENVIKVIVA 112 (188)
T ss_pred EEEEEECCCcHH----------------HHhhHHHHccCCCEEEEEEECcC-HHHHHHHHHHHHHHHHhCCCCCeEEEEE
Confidence 577899999521 23567788888888888774322 111 123444455555556789999
Q ss_pred cCCCcc
Q 004351 209 TKLDTK 214 (759)
Q Consensus 209 TK~D~~ 214 (759)
||.|+.
T Consensus 113 nK~Dl~ 118 (188)
T cd04125 113 NKSDLV 118 (188)
T ss_pred ECCCCc
Confidence 999986
No 131
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=98.00 E-value=4.8e-05 Score=72.61 Aligned_cols=25 Identities=32% Similarity=0.364 Sum_probs=22.6
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.|+|+|..++|||||+++|++..+.
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~ 25 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFV 25 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC
Confidence 4899999999999999999988764
No 132
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=97.99 E-value=3.4e-05 Score=76.38 Aligned_cols=66 Identities=20% Similarity=0.339 Sum_probs=42.8
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccC--CcCc-HHHHHHHHHh-CcCCCeEEEEe
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCS--DWSN-ATTRRVVMQI-DPELKRTIIVS 208 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~--D~~~-~~~l~lar~~-Dp~g~RTIgVl 208 (759)
.|.|+|+||-.. ...|...|+...+.+|+++...+ -+.+ ..+....++. ...+.+.|.|.
T Consensus 51 ~l~i~Dt~G~~~----------------~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvg 114 (172)
T cd04141 51 LLDILDTAGQAE----------------FTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVG 114 (172)
T ss_pred EEEEEeCCCchh----------------hHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 578899999732 23677788989888888864321 1111 1123334443 33467899999
Q ss_pred cCCCcc
Q 004351 209 TKLDTK 214 (759)
Q Consensus 209 TK~D~~ 214 (759)
||.|+.
T Consensus 115 NK~Dl~ 120 (172)
T cd04141 115 NKVDLE 120 (172)
T ss_pred EChhhh
Confidence 999984
No 133
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.99 E-value=4.3e-05 Score=78.47 Aligned_cols=27 Identities=30% Similarity=0.458 Sum_probs=24.4
Q ss_pred CEEEEEeccCCchHHHHHHHhCCccce
Q 004351 25 PAVLVVGHQTDGKSALVEALMGFQFNH 51 (759)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~~fp~ 51 (759)
..|+|+|+.++||||||+.+++..|++
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~ 29 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAE 29 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC
Confidence 479999999999999999999988763
No 134
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=97.98 E-value=3.8e-05 Score=74.94 Aligned_cols=27 Identities=26% Similarity=0.444 Sum_probs=24.2
Q ss_pred CEEEEEeccCCchHHHHHHHhCCccce
Q 004351 25 PAVLVVGHQTDGKSALVEALMGFQFNH 51 (759)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~~fp~ 51 (759)
-.|+|+|+.++|||||++.+++-.|++
T Consensus 6 ~ki~vvG~~~~GKTsli~~~~~~~~~~ 32 (170)
T cd04116 6 LKVILLGDGGVGKSSLMNRYVTNKFDT 32 (170)
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCc
Confidence 579999999999999999999877763
No 135
>PLN03127 Elongation factor Tu; Provisional
Probab=97.98 E-value=2.2e-05 Score=89.82 Aligned_cols=82 Identities=13% Similarity=0.124 Sum_probs=49.0
Q ss_pred ccccceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHHHH
Q 004351 116 QFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVM 195 (759)
Q Consensus 116 ~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar 195 (759)
+++-+...+..+.++ ..++||||||... .+.+|+... ...+.++|+ +++.+....+..+.+.
T Consensus 109 GiTi~~~~~~~~~~~-~~i~~iDtPGh~~---------------f~~~~~~g~-~~aD~allV-Vda~~g~~~qt~e~l~ 170 (447)
T PLN03127 109 GITIATAHVEYETAK-RHYAHVDCPGHAD---------------YVKNMITGA-AQMDGGILV-VSAPDGPMPQTKEHIL 170 (447)
T ss_pred CceeeeeEEEEcCCC-eEEEEEECCCccc---------------hHHHHHHHH-hhCCEEEEE-EECCCCCchhHHHHHH
Confidence 455555555555432 4689999999831 233555443 345555554 4454333444556666
Q ss_pred HhCcCCCe-EEEEecCCCccc
Q 004351 196 QIDPELKR-TIIVSTKLDTKI 215 (759)
Q Consensus 196 ~~Dp~g~R-TIgVlTK~D~~~ 215 (759)
.+...|.+ .|.|+||+|++.
T Consensus 171 ~~~~~gip~iIvviNKiDlv~ 191 (447)
T PLN03127 171 LARQVGVPSLVVFLNKVDVVD 191 (447)
T ss_pred HHHHcCCCeEEEEEEeeccCC
Confidence 66656766 478999999863
No 136
>PLN03108 Rab family protein; Provisional
Probab=97.98 E-value=5.7e-05 Score=77.43 Aligned_cols=27 Identities=22% Similarity=0.351 Sum_probs=24.5
Q ss_pred CEEEEEeccCCchHHHHHHHhCCccce
Q 004351 25 PAVLVVGHQTDGKSALVEALMGFQFNH 51 (759)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~~fp~ 51 (759)
-.|||+|+.++|||||++.|++..|.+
T Consensus 7 ~kivivG~~gvGKStLi~~l~~~~~~~ 33 (210)
T PLN03108 7 FKYIIIGDTGVGKSCLLLQFTDKRFQP 33 (210)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCC
Confidence 579999999999999999999988763
No 137
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=97.98 E-value=2.8e-05 Score=75.40 Aligned_cols=25 Identities=28% Similarity=0.573 Sum_probs=22.9
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
+|.+||..+||||||+++|.|....
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~ 27 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIR 27 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCC
Confidence 6899999999999999999997765
No 138
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.97 E-value=3.6e-05 Score=78.02 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=23.1
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.|||+|+.++|||||++.+++-.|+
T Consensus 2 KivivG~~~vGKTsli~~l~~~~~~ 26 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGIFS 26 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC
Confidence 5899999999999999999988775
No 139
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=0.00084 Score=78.29 Aligned_cols=176 Identities=16% Similarity=0.284 Sum_probs=104.0
Q ss_pred HHHHHHhhhhcCCCCCCCEEEEEeccCCchHHHHHHHhCCccceecCccccccceEEEEeeCCCCCCCceEEecCCCCCC
Q 004351 8 YNELHGLAQELETPFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCHLASSDVDPT 87 (759)
Q Consensus 8 ~n~L~~l~~~~~~~i~lPqIVVVG~QSsGKSSLLEAL~G~~fp~~g~g~cTR~P~~l~l~~~~~~~~~~~~i~~~d~~~~ 87 (759)
-++|..+...+.. .--.|++.|+.|+|||||+||++--++.|.|.|.||=|=.+|.=. . ...++...++
T Consensus 95 ~~~l~~i~~~l~r--~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~Vega--d---G~e~vl~~~~---- 163 (749)
T KOG0448|consen 95 EDKLDAIDEVLAR--RHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGA--D---GAEAVLATEG---- 163 (749)
T ss_pred HHHHHHHHHHHhh--cccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeeccc--C---CcceeeccCC----
Confidence 3445555433322 234689999999999999999999999889999999765544321 1 1234444322
Q ss_pred cccccChHHHHHHHHHHHhhhhhccCCCccccceEEEEEEecC--C----CCcEEEeCCCCcCCCCCCCchhhHHHHHHH
Q 004351 88 LAQEKSLQEIQSFIEAENMRLERESNSNQFSAKEIIIKVEFKY--C----PNLTIIDTPGLIAPAPGRKNRALQDQARAV 161 (759)
Q Consensus 88 ~~~~~~~~~l~~~Ie~~~~~l~~~~~~~~fS~d~I~leI~~p~--~----p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v 161 (759)
.+...+..-+...+.. +..+. . -...--++|..|+ | -++.+||-||+.-.+. .
T Consensus 164 s~ek~d~~ti~~~~ha----L~~~~---~-~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se-------------~ 222 (749)
T KOG0448|consen 164 SEEKIDMKTINQLAHA----LKPDK---D-LGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSE-------------L 222 (749)
T ss_pred CcccccHHHHhHHHHh----cCccc---c-cCcceEEEEEecCccchhhhccceeccCCCCCCchh-------------h
Confidence 1222333333322222 11111 0 1122356666665 2 3899999999976431 1
Q ss_pred HHHHHHHhcCccceeEeecccCCcCcHHHHHHHHHhCcCCCeEEEEecCCCcccc
Q 004351 162 ESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKLDTKIP 216 (759)
Q Consensus 162 ~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~RTIgVlTK~D~~~~ 216 (759)
..-|.++....+-.||+|.+-+.+.. .+.++.+.+-.+-....++.+|+|....
T Consensus 223 tswid~~cldaDVfVlV~NaEntlt~-sek~Ff~~vs~~KpniFIlnnkwDasas 276 (749)
T KOG0448|consen 223 TSWIDSFCLDADVFVLVVNAENTLTL-SEKQFFHKVSEEKPNIFILNNKWDASAS 276 (749)
T ss_pred hHHHHHHhhcCCeEEEEecCccHhHH-HHHHHHHHhhccCCcEEEEechhhhhcc
Confidence 24556667778888887766554433 3455666555443445666678899743
No 140
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=97.96 E-value=4.2e-05 Score=78.57 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=22.9
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.|++||+.++|||||++.|++-.|+
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~~ 26 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGFG 26 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCC
Confidence 5899999999999999999987775
No 141
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=97.95 E-value=3.1e-05 Score=91.31 Aligned_cols=65 Identities=22% Similarity=0.110 Sum_probs=40.2
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcC--cHHHHHHHHHhCcCCCe-EEEEe
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWS--NATTRRVVMQIDPELKR-TIIVS 208 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~--~~~~l~lar~~Dp~g~R-TIgVl 208 (759)
..++|||+||.- ..+.+| ..++.+.+.+||+|.....+. +.+.+.+++. .|.. .|.|+
T Consensus 50 ~~v~~iDtPGhe---------------~f~~~~-~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~---lgi~~iIVVl 110 (581)
T TIGR00475 50 YRLGFIDVPGHE---------------KFISNA-IAGGGGIDAALLVVDADEGVMTQTGEHLAVLDL---LGIPHTIVVI 110 (581)
T ss_pred EEEEEEECCCHH---------------HHHHHH-HhhhccCCEEEEEEECCCCCcHHHHHHHHHHHH---cCCCeEEEEE
Confidence 578999999951 123344 456677777777654333222 2223344443 4555 99999
Q ss_pred cCCCccc
Q 004351 209 TKLDTKI 215 (759)
Q Consensus 209 TK~D~~~ 215 (759)
||+|+..
T Consensus 111 NK~Dlv~ 117 (581)
T TIGR00475 111 TKADRVN 117 (581)
T ss_pred ECCCCCC
Confidence 9999964
No 142
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=97.95 E-value=4.1e-05 Score=76.61 Aligned_cols=25 Identities=32% Similarity=0.588 Sum_probs=23.1
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.|+|+|+.++|||||++++++-.|.
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~~ 26 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRFL 26 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcC
Confidence 6999999999999999999987775
No 143
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=97.94 E-value=3.9e-05 Score=74.82 Aligned_cols=25 Identities=36% Similarity=0.409 Sum_probs=23.2
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.|+++|+.++|||||++++++-.|+
T Consensus 3 kv~~vG~~~vGKTsli~~~~~~~f~ 27 (165)
T cd04140 3 RVVVFGAGGVGKSSLVLRFVKGTFR 27 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC
Confidence 6899999999999999999988875
No 144
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=97.92 E-value=3.7e-05 Score=77.83 Aligned_cols=25 Identities=24% Similarity=0.433 Sum_probs=22.6
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.|+|||+.++|||||++.+++-.|+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~ 25 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFE 25 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC
Confidence 4899999999999999999987765
No 145
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=97.92 E-value=6.2e-05 Score=74.40 Aligned_cols=27 Identities=19% Similarity=0.290 Sum_probs=23.5
Q ss_pred CCEEEEEeccCCchHHHHHHHhCCccc
Q 004351 24 APAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 24 lPqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
-..|+++|.+++|||||++.|++-.|.
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~ 41 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVV 41 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCC
Confidence 358999999999999999999876654
No 146
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=97.91 E-value=4.6e-05 Score=85.80 Aligned_cols=124 Identities=20% Similarity=0.223 Sum_probs=72.2
Q ss_pred CEEEEEeccCCchHHHHHHHhCCccceecCccccccceEEEEeeCCCCCCCceEEecCCCCCCcccccChHHHHHHHHHH
Q 004351 25 PAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEIQSFIEAE 104 (759)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~~fp~~g~g~cTR~P~~l~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~l~~~Ie~~ 104 (759)
++||++|..++|||||||||+.-+.-.++.-
T Consensus 269 l~iaIvGrPNvGKSSLlNaL~~~drsIVSpv------------------------------------------------- 299 (531)
T KOG1191|consen 269 LQIAIVGRPNVGKSSLLNALSREDRSIVSPV------------------------------------------------- 299 (531)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCceEeCCC-------------------------------------------------
Confidence 7999999999999999999998775433110
Q ss_pred HhhhhhccCCCccccceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCC
Q 004351 105 NMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSD 184 (759)
Q Consensus 105 ~~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D 184 (759)
.+-+.|.|...+. ++.....|+||-|+... .++..+. ..+ +-.++-+...+ +|++|+++..
T Consensus 300 ----------~GTTRDaiea~v~-~~G~~v~L~DTAGiRe~-~~~~iE~--~gI----~rA~k~~~~ad-vi~~vvda~~ 360 (531)
T KOG1191|consen 300 ----------PGTTRDAIEAQVT-VNGVPVRLSDTAGIREE-SNDGIEA--LGI----ERARKRIERAD-VILLVVDAEE 360 (531)
T ss_pred ----------CCcchhhheeEee-cCCeEEEEEeccccccc-cCChhHH--HhH----HHHHHHHhhcC-EEEEEecccc
Confidence 1223345555555 56677899999999872 2222111 112 22344455555 4445544421
Q ss_pred cCcHHHHHHHHHhCcCC------------CeEEEEecCCCcccc
Q 004351 185 WSNATTRRVVMQIDPEL------------KRTIIVSTKLDTKIP 216 (759)
Q Consensus 185 ~~~~~~l~lar~~Dp~g------------~RTIgVlTK~D~~~~ 216 (759)
-.+.+.+.+++.+-..| .|-|.|.+|.|...+
T Consensus 361 ~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~ 404 (531)
T KOG1191|consen 361 SDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSK 404 (531)
T ss_pred cccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCc
Confidence 11222334333332222 477888999998765
No 147
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=97.90 E-value=2.5e-05 Score=82.40 Aligned_cols=77 Identities=17% Similarity=0.123 Sum_probs=54.7
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEee--cccCCcCcHHHHHHHHHhCcCCCeEEEEec
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCL--EDCSDWSNATTRRVVMQIDPELKRTIIVST 209 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V--~~~~D~~~~~~l~lar~~Dp~g~RTIgVlT 209 (759)
-.+++||+||+.++.-|... ...+.++++.|..++++++-+. ++++-..+..+...+..+...+-....|+|
T Consensus 183 ~~~~~vDlPG~~~a~y~~~~------~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~~VP~t~vfT 256 (320)
T KOG2486|consen 183 KSWYEVDLPGYGRAGYGFEL------PADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGENNVPMTSVFT 256 (320)
T ss_pred ceEEEEecCCcccccCCccC------cchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhcCCCeEEeee
Confidence 46899999998887654432 3557799999999988877543 344322333345556666667788999999
Q ss_pred CCCcc
Q 004351 210 KLDTK 214 (759)
Q Consensus 210 K~D~~ 214 (759)
|+|+.
T Consensus 257 K~DK~ 261 (320)
T KOG2486|consen 257 KCDKQ 261 (320)
T ss_pred hhhhh
Confidence 99995
No 148
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=97.90 E-value=4.1e-05 Score=74.05 Aligned_cols=25 Identities=36% Similarity=0.410 Sum_probs=23.0
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.|+++|+.++|||||++.+.+-.|+
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~~~~ 27 (163)
T cd04176 3 KVVVLGSGGVGKSALTVQFVSGTFI 27 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC
Confidence 6999999999999999999987776
No 149
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=97.89 E-value=5.3e-05 Score=74.44 Aligned_cols=67 Identities=15% Similarity=0.189 Sum_probs=40.4
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCC--cCcH-HH-HHHHHHhCcCCCeEEEE
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSD--WSNA-TT-RRVVMQIDPELKRTIIV 207 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D--~~~~-~~-l~lar~~Dp~g~RTIgV 207 (759)
..+.++|+||.... ..+...|+...+.+|+++..++. +.+. .+ ..+.+.........|.|
T Consensus 43 ~~i~l~Dt~G~~~~----------------~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv 106 (169)
T cd04158 43 LKFTIWDVGGKHKL----------------RPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIF 106 (169)
T ss_pred EEEEEEECCCChhc----------------chHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEE
Confidence 46889999997421 24566788888888877753321 1111 11 12222212234679999
Q ss_pred ecCCCcc
Q 004351 208 STKLDTK 214 (759)
Q Consensus 208 lTK~D~~ 214 (759)
.||.|+.
T Consensus 107 ~NK~Dl~ 113 (169)
T cd04158 107 ANKQDVA 113 (169)
T ss_pred EeCcCcc
Confidence 9999984
No 150
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=97.88 E-value=3.9e-05 Score=79.25 Aligned_cols=82 Identities=18% Similarity=0.214 Sum_probs=45.5
Q ss_pred ccccceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccC-C-----cCcHH
Q 004351 116 QFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCS-D-----WSNAT 189 (759)
Q Consensus 116 ~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~-D-----~~~~~ 189 (759)
+.+.+.....+... ...++|+||||... .+..+ ..++...+.+|++|-+.. + -...+
T Consensus 62 g~T~d~~~~~~~~~-~~~i~liDtpG~~~---------------~~~~~-~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~ 124 (219)
T cd01883 62 GVTIDVGLAKFETE-KYRFTILDAPGHRD---------------FVPNM-ITGASQADVAVLVVDARKGEFEAGFEKGGQ 124 (219)
T ss_pred ccCeecceEEEeeC-CeEEEEEECCChHH---------------HHHHH-HHHhhhCCEEEEEEECCCCccccccccccc
Confidence 45556555566553 46899999999721 11122 345666776666553322 1 11122
Q ss_pred HHHHHHHhCcCC-CeEEEEecCCCcc
Q 004351 190 TRRVVMQIDPEL-KRTIIVSTKLDTK 214 (759)
Q Consensus 190 ~l~lar~~Dp~g-~RTIgVlTK~D~~ 214 (759)
..+..+..+-.+ .+.|+|+||.|+.
T Consensus 125 ~~~~~~~~~~~~~~~iiivvNK~Dl~ 150 (219)
T cd01883 125 TREHALLARTLGVKQLIVAVNKMDDV 150 (219)
T ss_pred hHHHHHHHHHcCCCeEEEEEEccccc
Confidence 222222222233 5788999999986
No 151
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=97.87 E-value=4.6e-05 Score=79.33 Aligned_cols=66 Identities=21% Similarity=0.264 Sum_probs=46.8
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHHHHHhCcCCCeEEEEecCC
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKL 211 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~RTIgVlTK~ 211 (759)
..+.|+||||...- ...+..+++..+.+||+|..... .......+++.+...+.+.|.|+||.
T Consensus 73 ~~i~iiDTPG~~~f----------------~~~~~~~l~~aD~~ilVvD~~~g-~~~~t~~~l~~~~~~~~p~ilviNKi 135 (222)
T cd01885 73 YLINLIDSPGHVDF----------------SSEVTAALRLCDGALVVVDAVEG-VCVQTETVLRQALKERVKPVLVINKI 135 (222)
T ss_pred eEEEEECCCCcccc----------------HHHHHHHHHhcCeeEEEEECCCC-CCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 46899999998531 14567778888888876643322 33445666666666678899999999
Q ss_pred Ccc
Q 004351 212 DTK 214 (759)
Q Consensus 212 D~~ 214 (759)
|+.
T Consensus 136 D~~ 138 (222)
T cd01885 136 DRL 138 (222)
T ss_pred Ccc
Confidence 985
No 152
>PLN03118 Rab family protein; Provisional
Probab=97.87 E-value=6.5e-05 Score=76.78 Aligned_cols=26 Identities=23% Similarity=0.416 Sum_probs=23.3
Q ss_pred CEEEEEeccCCchHHHHHHHhCCccc
Q 004351 25 PAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.+|+|||+.++|||||+++|++-.+.
T Consensus 15 ~kv~ivG~~~vGKTsli~~l~~~~~~ 40 (211)
T PLN03118 15 FKILLIGDSGVGKSSLLVSFISSSVE 40 (211)
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCC
Confidence 48999999999999999999987653
No 153
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=97.86 E-value=8.5e-05 Score=72.64 Aligned_cols=67 Identities=19% Similarity=0.254 Sum_probs=41.2
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCC--cC-cHHHHHHHHH-hCcCCCeEEEEe
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSD--WS-NATTRRVVMQ-IDPELKRTIIVS 208 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D--~~-~~~~l~lar~-~Dp~g~RTIgVl 208 (759)
.+.|+|+||... ...|...|++..+.+++++...+. +. ...+...... .+..+...|.|.
T Consensus 50 ~~~i~Dt~G~~~----------------~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~ 113 (168)
T cd04177 50 DLEILDTAGTEQ----------------FTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVG 113 (168)
T ss_pred EEEEEeCCCccc----------------chhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEE
Confidence 678899999632 225667778888878777643221 11 1112232322 345567789999
Q ss_pred cCCCccc
Q 004351 209 TKLDTKI 215 (759)
Q Consensus 209 TK~D~~~ 215 (759)
||.|+..
T Consensus 114 nK~D~~~ 120 (168)
T cd04177 114 NKADLED 120 (168)
T ss_pred EChhccc
Confidence 9999854
No 154
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=97.86 E-value=0.00011 Score=76.98 Aligned_cols=24 Identities=33% Similarity=0.420 Sum_probs=22.2
Q ss_pred EEEEEeccCCchHHHHHHHhCCcc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQF 49 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~f 49 (759)
+|+++|..|+|||||+++|+|...
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~ 25 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKS 25 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc
Confidence 689999999999999999999864
No 155
>CHL00071 tufA elongation factor Tu
Probab=97.86 E-value=7.1e-05 Score=84.75 Aligned_cols=67 Identities=15% Similarity=0.176 Sum_probs=41.4
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHHHHHhCcCCCe-EEEEecC
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKR-TIIVSTK 210 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~R-TIgVlTK 210 (759)
..++||||||.. +.+..|+.. +...+.++|+|. +.+-......+.++.++..|.+ .|.|+||
T Consensus 75 ~~~~~iDtPGh~---------------~~~~~~~~~-~~~~D~~ilVvd-a~~g~~~qt~~~~~~~~~~g~~~iIvvvNK 137 (409)
T CHL00071 75 RHYAHVDCPGHA---------------DYVKNMITG-AAQMDGAILVVS-AADGPMPQTKEHILLAKQVGVPNIVVFLNK 137 (409)
T ss_pred eEEEEEECCChH---------------HHHHHHHHH-HHhCCEEEEEEE-CCCCCcHHHHHHHHHHHHcCCCEEEEEEEc
Confidence 468899999952 234455443 445666665554 4332334455555556656665 6789999
Q ss_pred CCccc
Q 004351 211 LDTKI 215 (759)
Q Consensus 211 ~D~~~ 215 (759)
+|+..
T Consensus 138 ~D~~~ 142 (409)
T CHL00071 138 EDQVD 142 (409)
T ss_pred cCCCC
Confidence 99964
No 156
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=97.85 E-value=0.00014 Score=71.62 Aligned_cols=79 Identities=11% Similarity=0.152 Sum_probs=45.6
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHH----HHHHhCcCCCeEEEEe
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRR----VVMQIDPELKRTIIVS 208 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~----lar~~Dp~g~RTIgVl 208 (759)
.+.|+|+||... .+.+...|+++.+.+|+++-..+.-.-..+.+ +.+.....+...+.|.
T Consensus 54 ~~~l~Dt~G~~~----------------~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~ 117 (168)
T cd04149 54 KFNVWDVGGQDK----------------IRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFA 117 (168)
T ss_pred EEEEEECCCCHH----------------HHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEE
Confidence 588999999732 23456678888888877764332111112222 2222112356899999
Q ss_pred cCCCcccccccChhhHHHhhC
Q 004351 209 TKLDTKIPQFARASDVEVFLS 229 (759)
Q Consensus 209 TK~D~~~~~~~~~~~~~~~L~ 229 (759)
||.|+... ....++..++.
T Consensus 118 NK~Dl~~~--~~~~~i~~~~~ 136 (168)
T cd04149 118 NKQDLPDA--MKPHEIQEKLG 136 (168)
T ss_pred ECcCCccC--CCHHHHHHHcC
Confidence 99998421 12345555553
No 157
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=97.85 E-value=5.4e-05 Score=77.57 Aligned_cols=67 Identities=22% Similarity=0.269 Sum_probs=46.3
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccC--CcCc-HHHHHHHHHhCcCCCeEEEEe
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCS--DWSN-ATTRRVVMQIDPELKRTIIVS 208 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~--D~~~-~~~l~lar~~Dp~g~RTIgVl 208 (759)
..|.|.||||-. ..+.|...|+++.+.+|+++..++ -+.+ ..++...+...+.+...|.|.
T Consensus 49 v~l~iwDtaGqe----------------~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVg 112 (202)
T cd04120 49 IRLQIWDTAGQE----------------RFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVG 112 (202)
T ss_pred EEEEEEeCCCch----------------hhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEE
Confidence 467889999962 234677889999999988764221 1111 234556666666678899999
Q ss_pred cCCCcc
Q 004351 209 TKLDTK 214 (759)
Q Consensus 209 TK~D~~ 214 (759)
||.|+.
T Consensus 113 NK~DL~ 118 (202)
T cd04120 113 NKLDCE 118 (202)
T ss_pred ECcccc
Confidence 999984
No 158
>PLN03110 Rab GTPase; Provisional
Probab=97.85 E-value=0.0001 Score=76.01 Aligned_cols=66 Identities=15% Similarity=0.089 Sum_probs=44.1
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccC--CcCc-HHHHHHHHHhCcCCCeEEEEec
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCS--DWSN-ATTRRVVMQIDPELKRTIIVST 209 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~--D~~~-~~~l~lar~~Dp~g~RTIgVlT 209 (759)
.+.|+|+||-. ....+...|+++.+.+|+++...+ .+.+ ..++..++...+.+...|+|.|
T Consensus 62 ~l~l~Dt~G~~----------------~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~n 125 (216)
T PLN03110 62 KAQIWDTAGQE----------------RYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGN 125 (216)
T ss_pred EEEEEECCCcH----------------HHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEE
Confidence 57789999942 234677888988777766654221 1111 2355666666666778999999
Q ss_pred CCCcc
Q 004351 210 KLDTK 214 (759)
Q Consensus 210 K~D~~ 214 (759)
|.|+.
T Consensus 126 K~Dl~ 130 (216)
T PLN03110 126 KSDLN 130 (216)
T ss_pred Chhcc
Confidence 99984
No 159
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=97.83 E-value=0.00013 Score=72.07 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=22.9
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.|+++|..++|||||++.+++..|+
T Consensus 3 kv~l~G~~g~GKTtl~~~~~~~~~~ 27 (180)
T cd04137 3 KIAVLGSRSVGKSSLTVQFVEGHFV 27 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCc
Confidence 5899999999999999999987775
No 160
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=97.83 E-value=3.5e-05 Score=75.34 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=22.4
Q ss_pred EEEEeccCCchHHHHHHHhCCccc
Q 004351 27 VLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 27 IVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
|+|+|+.++|||||++.+.+-.|+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~ 24 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFP 24 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCC
Confidence 689999999999999999998876
No 161
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=97.82 E-value=0.00012 Score=74.53 Aligned_cols=67 Identities=19% Similarity=0.200 Sum_probs=51.6
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeeccc----CCcCcHHHHHHHHHhCcCCCeEEEEe
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDC----SDWSNATTRRVVMQIDPELKRTIIVS 208 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~----~D~~~~~~l~lar~~Dp~g~RTIgVl 208 (759)
.+.++|++|. ..++.+...|...++.+++++... .+.....+...++..++.....|.|.
T Consensus 55 ~~~~~Dt~gq----------------~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~ 118 (219)
T COG1100 55 KLQLWDTAGQ----------------EEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVG 118 (219)
T ss_pred EEEeecCCCH----------------HHHHHHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEe
Confidence 4778999997 235588889999999999887432 24455556777777777778999999
Q ss_pred cCCCccc
Q 004351 209 TKLDTKI 215 (759)
Q Consensus 209 TK~D~~~ 215 (759)
+|.|+..
T Consensus 119 nK~Dl~~ 125 (219)
T COG1100 119 NKIDLFD 125 (219)
T ss_pred ccccccc
Confidence 9999953
No 162
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=97.82 E-value=5.5e-05 Score=73.40 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=23.4
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.|+++|+.++|||||+++|++-.++
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~~ 26 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKFP 26 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC
Confidence 5899999999999999999999885
No 163
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=97.82 E-value=7.3e-05 Score=75.08 Aligned_cols=66 Identities=21% Similarity=0.231 Sum_probs=41.2
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccC--CcCc-HHHHHHHHHhC---cCCCeEEE
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCS--DWSN-ATTRRVVMQID---PELKRTII 206 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~--D~~~-~~~l~lar~~D---p~g~RTIg 206 (759)
.|.|+||||... ...+...|++..+.+|+++...+ .+.. ..++...+.+. +.....|.
T Consensus 48 ~l~i~Dt~G~~~----------------~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piil 111 (190)
T cd04144 48 MLEVLDTAGQEE----------------YTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMI 111 (190)
T ss_pred EEEEEECCCchh----------------hHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEE
Confidence 588999999521 22466678888888887764221 1111 12333334333 34568999
Q ss_pred EecCCCcc
Q 004351 207 VSTKLDTK 214 (759)
Q Consensus 207 VlTK~D~~ 214 (759)
|.||.|+.
T Consensus 112 vgNK~Dl~ 119 (190)
T cd04144 112 VGNKCDKV 119 (190)
T ss_pred EEEChhcc
Confidence 99999985
No 164
>PLN00223 ADP-ribosylation factor; Provisional
Probab=97.82 E-value=0.00029 Score=70.57 Aligned_cols=66 Identities=17% Similarity=0.231 Sum_probs=41.0
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCc-HHHHHHHHH-hC---cCCCeEEE
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSN-ATTRRVVMQ-ID---PELKRTII 206 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~-~~~l~lar~-~D---p~g~RTIg 206 (759)
-.+.|+|+||-. ..+.+...|+++.+.+|+|+-.+ +..+ ..+...... +. ......+.
T Consensus 61 ~~~~i~D~~Gq~----------------~~~~~~~~~~~~a~~iI~V~D~s-~~~s~~~~~~~l~~~l~~~~~~~~piil 123 (181)
T PLN00223 61 ISFTVWDVGGQD----------------KIRPLWRHYFQNTQGLIFVVDSN-DRDRVVEARDELHRMLNEDELRDAVLLV 123 (181)
T ss_pred EEEEEEECCCCH----------------HHHHHHHHHhccCCEEEEEEeCC-cHHHHHHHHHHHHHHhcCHhhCCCCEEE
Confidence 358899999941 23467788999998888766432 2211 122222222 22 23568999
Q ss_pred EecCCCcc
Q 004351 207 VSTKLDTK 214 (759)
Q Consensus 207 VlTK~D~~ 214 (759)
|.||.|+.
T Consensus 124 v~NK~Dl~ 131 (181)
T PLN00223 124 FANKQDLP 131 (181)
T ss_pred EEECCCCC
Confidence 99999984
No 165
>COG2262 HflX GTPases [General function prediction only]
Probab=97.82 E-value=0.00034 Score=77.69 Aligned_cols=140 Identities=22% Similarity=0.269 Sum_probs=84.5
Q ss_pred HHHHHHHhhhhcCCCCCCCEEEEEeccCCchHHHHHHHhCCccceecCccccccceEEEEeeCCCCCCCceEEecCCCCC
Q 004351 7 AYNELHGLAQELETPFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCHLASSDVDP 86 (759)
Q Consensus 7 ~~n~L~~l~~~~~~~i~lPqIVVVG~QSsGKSSLLEAL~G~~fp~~g~g~cTR~P~~l~l~~~~~~~~~~~~i~~~d~~~ 86 (759)
.+.+=+...+.-...-.+|.|..||=.+||||||+|+|+|-..+..+.=..|--|
T Consensus 175 ~v~~~R~~~R~~R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdp------------------------- 229 (411)
T COG2262 175 NVEKAREPRRKKRSRSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDP------------------------- 229 (411)
T ss_pred HHHHHHHHHhhhhcccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccC-------------------------
Confidence 3444444444334678999999999999999999999998776522111111000
Q ss_pred CcccccChHHHHHHHHHHHhhhhhccCCCccccceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhh-HHHHHHHHHHH
Q 004351 87 TLAQEKSLQEIQSFIEAENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRAL-QDQARAVESLV 165 (759)
Q Consensus 87 ~~~~~~~~~~l~~~Ie~~~~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~~~q~~~~-e~~~~~v~~lv 165 (759)
. .=.+.-++.-...|-||=|+++.-+ ..+ ++.....++
T Consensus 230 ---------------------------------t--tR~~~l~~g~~vlLtDTVGFI~~LP----~~LV~AFksTLEE-- 268 (411)
T COG2262 230 ---------------------------------T--TRRIELGDGRKVLLTDTVGFIRDLP----HPLVEAFKSTLEE-- 268 (411)
T ss_pred ---------------------------------c--eeEEEeCCCceEEEecCccCcccCC----hHHHHHHHHHHHH--
Confidence 0 0022223345678899999998542 211 112222222
Q ss_pred HHHhcCccceeEeecccCCcCcHH----HHHHHHHhCcCCCeEEEEecCCCcccc
Q 004351 166 RAKMQHREFIILCLEDCSDWSNAT----TRRVVMQIDPELKRTIIVSTKLDTKIP 216 (759)
Q Consensus 166 ~~Yi~~~~~IIL~V~~~~D~~~~~----~l~lar~~Dp~g~RTIgVlTK~D~~~~ 216 (759)
+...+ ++|.|+|++|....+ ..++.++++-...++|.|+||.|++.+
T Consensus 269 ---~~~aD-lllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~ 319 (411)
T COG2262 269 ---VKEAD-LLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLED 319 (411)
T ss_pred ---hhcCC-EEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCc
Confidence 22444 556666665443322 356778887777999999999999744
No 166
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=97.82 E-value=0.00016 Score=74.02 Aligned_cols=26 Identities=35% Similarity=0.599 Sum_probs=24.3
Q ss_pred CEEEEEeccCCchHHHHHHHhCCccc
Q 004351 25 PAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
|.|+++|..++|||||+..|.+..++
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~ 26 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYR 26 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCC
Confidence 78999999999999999999998775
No 167
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=97.81 E-value=7.1e-05 Score=77.39 Aligned_cols=66 Identities=17% Similarity=0.159 Sum_probs=42.4
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCc---HHHHHHHHHhCcCCCeEEEEe
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSN---ATTRRVVMQIDPELKRTIIVS 208 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~---~~~l~lar~~Dp~g~RTIgVl 208 (759)
..|.|.|+||... ...+...|.++.+.+|+++..++...- ..++..++...+ +...|.|.
T Consensus 62 ~~l~i~Dt~G~~~----------------~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~-~~piilvg 124 (219)
T PLN03071 62 IRFYCWDTAGQEK----------------FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCG 124 (219)
T ss_pred EEEEEEECCCchh----------------hhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCC-CCcEEEEE
Confidence 3678999999732 125666788888888877643221111 123444444443 57899999
Q ss_pred cCCCcc
Q 004351 209 TKLDTK 214 (759)
Q Consensus 209 TK~D~~ 214 (759)
||.|+.
T Consensus 125 NK~Dl~ 130 (219)
T PLN03071 125 NKVDVK 130 (219)
T ss_pred Echhhh
Confidence 999984
No 168
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=97.80 E-value=0.00011 Score=73.10 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=23.3
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.|+|+|+.++|||||++.+.+-.|+
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~~ 26 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKFP 26 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCC
Confidence 6899999999999999999988876
No 169
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=97.79 E-value=0.0001 Score=87.40 Aligned_cols=56 Identities=9% Similarity=0.000 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHH---HHHhhhhhcchhhhhhhhhHHHHHHHHhhcccchhhhhchhhHHHHHHhh
Q 004351 658 QIFHGIREYFLA---SAELKFNCFLLMPVVDKLPALLREDLESAFEGDLDNVFDITNLRHSLSQQ 719 (759)
Q Consensus 658 ~~f~~iR~~~~~---~~~~k~n~ffL~P~~~~l~~~l~~~l~~~~~~~~~~~f~~~~~~~~l~~~ 719 (759)
..+..+=..+++ -+.+.=+.||..-.+.++-..|++.+.. ..-|+++.+|+.|.--
T Consensus 521 ~~~~~~l~~l~~~g~lv~l~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~r~~~g~s 579 (614)
T PRK10512 521 QAMRLTLRQAAQQGIITAIVKDRYYRNDRIVQFANMIRELDQE------CGSTCAADFRDRLGVG 579 (614)
T ss_pred HHHHHHHHHHHHCCCEEEecCCEEECHHHHHHHHHHHHHHHhh------CCcEeHHHHHHHhCcc
Confidence 334444444443 4566678999999999998888888733 2358888888888766
No 170
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=97.79 E-value=7.3e-05 Score=72.68 Aligned_cols=25 Identities=36% Similarity=0.456 Sum_probs=22.2
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.|+|||+.++|||||++++++..|.
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~ 25 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFI 25 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccc
Confidence 3899999999999999999976664
No 171
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=97.79 E-value=0.00012 Score=71.68 Aligned_cols=23 Identities=35% Similarity=0.462 Sum_probs=21.2
Q ss_pred EEEEEeccCCchHHHHHHHhCCc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQ 48 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~ 48 (759)
+|+++|..++|||||+++|.|..
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~ 25 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNY 25 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 69999999999999999999853
No 172
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=97.78 E-value=0.00011 Score=78.60 Aligned_cols=125 Identities=19% Similarity=0.269 Sum_probs=78.2
Q ss_pred EEEEEeccCCchHHHHHHHhCCccceecCccccccceEEEEeeCCCCCCCceEEecCCCCCCcccccChHHHHHHHHHHH
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEIQSFIEAEN 105 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp~~g~g~cTR~P~~l~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~l~~~Ie~~~ 105 (759)
+|+|||..++|||+|.|.++|.++.++..-+-| .++.+
T Consensus 74 ~vavIG~PNvGKStLtN~mig~kv~~vS~K~~T----------------Tr~~i-------------------------- 111 (379)
T KOG1423|consen 74 YVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHT----------------TRHRI-------------------------- 111 (379)
T ss_pred EEEEEcCCCcchhhhhhHhhCCccccccccccc----------------eeeee--------------------------
Confidence 799999999999999999999997655322111 01111
Q ss_pred hhhhhccCCCccccceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeeccc--C
Q 004351 106 MRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDC--S 183 (759)
Q Consensus 106 ~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~--~ 183 (759)
+-|....-..|.|+||||++......+...+ .-+..-.+.-+.+.+.+++++-++ .
T Consensus 112 ------------------lgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~----~s~lq~~~~a~q~AD~vvVv~Das~tr 169 (379)
T KOG1423|consen 112 ------------------LGIITSGETQLVFYDTPGLVSKKMHRRHHLM----MSVLQNPRDAAQNADCVVVVVDASATR 169 (379)
T ss_pred ------------------eEEEecCceEEEEecCCcccccchhhhHHHH----HHhhhCHHHHHhhCCEEEEEEeccCCc
Confidence 0111122356899999999986644432211 112223344466667666555333 4
Q ss_pred CcCcHHHHHHHHHhCcCCCeEEEEecCCCcccc
Q 004351 184 DWSNATTRRVVMQIDPELKRTIIVSTKLDTKIP 216 (759)
Q Consensus 184 D~~~~~~l~lar~~Dp~g~RTIgVlTK~D~~~~ 216 (759)
..-+...+.+.+++- ....|.|++|.|+..+
T Consensus 170 ~~l~p~vl~~l~~ys--~ips~lvmnkid~~k~ 200 (379)
T KOG1423|consen 170 TPLHPRVLHMLEEYS--KIPSILVMNKIDKLKQ 200 (379)
T ss_pred CccChHHHHHHHHHh--cCCceeeccchhcchh
Confidence 555566788888874 3468999999999643
No 173
>PRK00049 elongation factor Tu; Reviewed
Probab=97.78 E-value=0.00011 Score=82.81 Aligned_cols=80 Identities=16% Similarity=0.165 Sum_probs=44.7
Q ss_pred cccceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHHHHH
Q 004351 117 FSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQ 196 (759)
Q Consensus 117 fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~ 196 (759)
.+-+...+.... ....++||||||.. +.+.++... +...+.++|+| ++.+-....+.+++..
T Consensus 61 ~Ti~~~~~~~~~-~~~~i~~iDtPG~~---------------~f~~~~~~~-~~~aD~~llVV-Da~~g~~~qt~~~~~~ 122 (396)
T PRK00049 61 ITINTAHVEYET-EKRHYAHVDCPGHA---------------DYVKNMITG-AAQMDGAILVV-SAADGPMPQTREHILL 122 (396)
T ss_pred eEEeeeEEEEcC-CCeEEEEEECCCHH---------------HHHHHHHhh-hccCCEEEEEE-ECCCCCchHHHHHHHH
Confidence 443443334332 23468999999972 223344433 45666666655 4433233444444444
Q ss_pred hCcCCCeEE-EEecCCCcc
Q 004351 197 IDPELKRTI-IVSTKLDTK 214 (759)
Q Consensus 197 ~Dp~g~RTI-gVlTK~D~~ 214 (759)
+...|.+.+ .|+||+|+.
T Consensus 123 ~~~~g~p~iiVvvNK~D~~ 141 (396)
T PRK00049 123 ARQVGVPYIVVFLNKCDMV 141 (396)
T ss_pred HHHcCCCEEEEEEeecCCc
Confidence 454566665 689999996
No 174
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=97.78 E-value=0.00014 Score=70.84 Aligned_cols=67 Identities=19% Similarity=0.237 Sum_probs=42.3
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCC--cC-cHHHHHHHHHhCcCCCeEEEEec
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSD--WS-NATTRRVVMQIDPELKRTIIVST 209 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D--~~-~~~~l~lar~~Dp~g~RTIgVlT 209 (759)
.|.|.|+||-.. ...+...|..+.+.+++++...+. +. -..++..++...+.....+.|.|
T Consensus 50 ~l~i~D~~g~~~----------------~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgn 113 (161)
T cd04117 50 RIQIWDTAGQER----------------YQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGN 113 (161)
T ss_pred EEEEEeCCCcHh----------------HHhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEE
Confidence 577899999522 235677888888888877642211 10 11233333444455678999999
Q ss_pred CCCccc
Q 004351 210 KLDTKI 215 (759)
Q Consensus 210 K~D~~~ 215 (759)
|.|+..
T Consensus 114 K~Dl~~ 119 (161)
T cd04117 114 KADEEQ 119 (161)
T ss_pred Cccccc
Confidence 999853
No 175
>PTZ00369 Ras-like protein; Provisional
Probab=97.77 E-value=9.1e-05 Score=74.30 Aligned_cols=27 Identities=33% Similarity=0.352 Sum_probs=24.3
Q ss_pred CCEEEEEeccCCchHHHHHHHhCCccc
Q 004351 24 APAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 24 lPqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
-+.|||+|+.++|||||++.+.+-.|+
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~ 31 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFI 31 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 368999999999999999999987775
No 176
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=97.74 E-value=0.00022 Score=69.53 Aligned_cols=67 Identities=15% Similarity=0.181 Sum_probs=40.5
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHHHHHh----CcCCCeEEEE
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQI----DPELKRTIIV 207 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~~----Dp~g~RTIgV 207 (759)
-.+.|.|+||... ...+...|+++.+.+|+++-.++.-.-..+.+..+++ .-.....+.|
T Consensus 44 ~~~~l~D~~G~~~----------------~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv 107 (159)
T cd04150 44 ISFTVWDVGGQDK----------------IRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVF 107 (159)
T ss_pred EEEEEEECCCCHh----------------HHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEE
Confidence 4588999999732 2356678999998888776433211111122222222 1123678999
Q ss_pred ecCCCcc
Q 004351 208 STKLDTK 214 (759)
Q Consensus 208 lTK~D~~ 214 (759)
.||.|+.
T Consensus 108 ~NK~Dl~ 114 (159)
T cd04150 108 ANKQDLP 114 (159)
T ss_pred EECCCCC
Confidence 9999984
No 177
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=97.73 E-value=6.3e-05 Score=75.56 Aligned_cols=66 Identities=21% Similarity=0.300 Sum_probs=42.2
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeec-cc-CCcCcH--HHHHHHHHhCcCCCeEEEE
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLE-DC-SDWSNA--TTRRVVMQIDPELKRTIIV 207 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~-~~-~D~~~~--~~l~lar~~Dp~g~RTIgV 207 (759)
..|.|.|+||--.. ..+...|.+..+.+||+.. .. ..+.+. .++..++...+ +...|.|
T Consensus 48 ~~l~i~Dt~G~~~~----------------~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~-~~piilv 110 (189)
T cd04134 48 IELSLWDTAGQEEF----------------DRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCP-GVKLVLV 110 (189)
T ss_pred EEEEEEECCCChhc----------------cccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEE
Confidence 36788999996321 1344457788888888764 22 223222 24555555444 5779999
Q ss_pred ecCCCcc
Q 004351 208 STKLDTK 214 (759)
Q Consensus 208 lTK~D~~ 214 (759)
.||.|+.
T Consensus 111 gNK~Dl~ 117 (189)
T cd04134 111 ALKCDLR 117 (189)
T ss_pred EEChhhc
Confidence 9999985
No 178
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=97.72 E-value=0.00026 Score=70.88 Aligned_cols=66 Identities=17% Similarity=0.200 Sum_probs=40.1
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCc-HHHHHHHHHh-C---cCCCeEEE
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSN-ATTRRVVMQI-D---PELKRTII 206 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~-~~~l~lar~~-D---p~g~RTIg 206 (759)
-.+.|+|+||... .+.+...|++..+.+|+++..+ +..+ ..+.....++ . -.....|.
T Consensus 61 ~~~~l~D~~G~~~----------------~~~~~~~~~~~ad~iI~v~D~t-~~~s~~~~~~~l~~~~~~~~~~~~piil 123 (182)
T PTZ00133 61 LKFTMWDVGGQDK----------------LRPLWRHYYQNTNGLIFVVDSN-DRERIGDAREELERMLSEDELRDAVLLV 123 (182)
T ss_pred EEEEEEECCCCHh----------------HHHHHHHHhcCCCEEEEEEeCC-CHHHHHHHHHHHHHHHhCHhhcCCCEEE
Confidence 3588999999722 3357778999999888776432 2111 1112222221 1 12357899
Q ss_pred EecCCCcc
Q 004351 207 VSTKLDTK 214 (759)
Q Consensus 207 VlTK~D~~ 214 (759)
|.||.|+.
T Consensus 124 v~NK~Dl~ 131 (182)
T PTZ00133 124 FANKQDLP 131 (182)
T ss_pred EEeCCCCC
Confidence 99999974
No 179
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=97.72 E-value=3.8e-05 Score=70.52 Aligned_cols=25 Identities=32% Similarity=0.594 Sum_probs=22.2
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
+|+|+|+.++||||||++|.+..++
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~ 25 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFP 25 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCc
Confidence 5899999999999999999999986
No 180
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=97.71 E-value=0.00025 Score=70.32 Aligned_cols=67 Identities=13% Similarity=0.152 Sum_probs=40.6
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHHHHHh----CcCCCeEEEE
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQI----DPELKRTIIV 207 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~~----Dp~g~RTIgV 207 (759)
..+.|+|+||... .+.+...|+++.+.+|+++-.++.-.-..+.+....+ .......+.|
T Consensus 57 ~~l~l~D~~G~~~----------------~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv 120 (175)
T smart00177 57 ISFTVWDVGGQDK----------------IRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVF 120 (175)
T ss_pred EEEEEEECCCChh----------------hHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEE
Confidence 4688999999632 2357788899999887766432211111122222222 1234678999
Q ss_pred ecCCCcc
Q 004351 208 STKLDTK 214 (759)
Q Consensus 208 lTK~D~~ 214 (759)
.||.|+.
T Consensus 121 ~NK~Dl~ 127 (175)
T smart00177 121 ANKQDLP 127 (175)
T ss_pred EeCcCcc
Confidence 9999984
No 181
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=97.71 E-value=0.00013 Score=86.18 Aligned_cols=72 Identities=19% Similarity=0.240 Sum_probs=46.2
Q ss_pred EEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHHHHHhCcCCCeE
Q 004351 125 KVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRT 204 (759)
Q Consensus 125 eI~~p~~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~RT 204 (759)
.+.+.+ ..++||||||... ....+..|++..+.++|+|.+...+.. ......+.+.-.+.+.
T Consensus 58 ~v~~~~-~kinlIDTPGh~D----------------F~~ev~~~l~~aD~alLVVDa~~G~~~-qT~~~l~~a~~~~ip~ 119 (594)
T TIGR01394 58 AIRYNG-TKINIVDTPGHAD----------------FGGEVERVLGMVDGVLLLVDASEGPMP-QTRFVLKKALELGLKP 119 (594)
T ss_pred EEEECC-EEEEEEECCCHHH----------------HHHHHHHHHHhCCEEEEEEeCCCCCcH-HHHHHHHHHHHCCCCE
Confidence 344433 5799999999722 224567788888888887754433322 2333333333356789
Q ss_pred EEEecCCCcc
Q 004351 205 IIVSTKLDTK 214 (759)
Q Consensus 205 IgVlTK~D~~ 214 (759)
|.|+||.|+.
T Consensus 120 IVviNKiD~~ 129 (594)
T TIGR01394 120 IVVINKIDRP 129 (594)
T ss_pred EEEEECCCCC
Confidence 9999999984
No 182
>PRK10218 GTP-binding protein; Provisional
Probab=97.70 E-value=0.0002 Score=84.70 Aligned_cols=66 Identities=23% Similarity=0.216 Sum_probs=44.2
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHHHHHhCcCCCeEEEEecCC
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKL 211 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~RTIgVlTK~ 211 (759)
..+.|+||||...- ...+..|++..+.+||+|-+...+.. ......+.+...|.+.|+|+||.
T Consensus 68 ~~inliDTPG~~df----------------~~~v~~~l~~aDg~ILVVDa~~G~~~-qt~~~l~~a~~~gip~IVviNKi 130 (607)
T PRK10218 68 YRINIVDTPGHADF----------------GGEVERVMSMVDSVLLVVDAFDGPMP-QTRFVTKKAFAYGLKPIVVINKV 130 (607)
T ss_pred EEEEEEECCCcchh----------------HHHHHHHHHhCCEEEEEEecccCccH-HHHHHHHHHHHcCCCEEEEEECc
Confidence 57999999997331 24566788889988887754333222 23333444444577889999999
Q ss_pred Ccc
Q 004351 212 DTK 214 (759)
Q Consensus 212 D~~ 214 (759)
|+.
T Consensus 131 D~~ 133 (607)
T PRK10218 131 DRP 133 (607)
T ss_pred CCC
Confidence 984
No 183
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=97.70 E-value=0.00019 Score=74.71 Aligned_cols=66 Identities=15% Similarity=0.288 Sum_probs=41.7
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccC--CcCc--HHHHHHHHHhCcCCCeEEEE
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCS--DWSN--ATTRRVVMQIDPELKRTIIV 207 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~--D~~~--~~~l~lar~~Dp~g~RTIgV 207 (759)
..|.|.||+|-.. ...+...|+++.+.+|+|+...+ .+.+ ..+....+...| +...|.|
T Consensus 49 v~L~iwDt~G~e~----------------~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~-~~piiLV 111 (222)
T cd04173 49 IELNMWDTSGSSY----------------YDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCP-NAKVVLV 111 (222)
T ss_pred EEEEEEeCCCcHH----------------HHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEE
Confidence 3678899999622 22455568888888888774322 1111 123334444444 4789999
Q ss_pred ecCCCcc
Q 004351 208 STKLDTK 214 (759)
Q Consensus 208 lTK~D~~ 214 (759)
.||.|+.
T Consensus 112 gnK~DL~ 118 (222)
T cd04173 112 GCKLDMR 118 (222)
T ss_pred EECcccc
Confidence 9999985
No 184
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.68 E-value=0.00012 Score=79.86 Aligned_cols=169 Identities=21% Similarity=0.279 Sum_probs=91.1
Q ss_pred CCCCCEEEEEeccCCchHHHHHHHhCCccce--ecCcccc-ccceEEEEeeCCCCCCCceEEecCCCCCCcccccChHHH
Q 004351 21 PFDAPAVLVVGHQTDGKSALVEALMGFQFNH--VGGGTKT-RRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEI 97 (759)
Q Consensus 21 ~i~lPqIVVVG~QSsGKSSLLEAL~G~~fp~--~g~g~cT-R~P~~l~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~l 97 (759)
...-|-|.++|.=|.||||+|+-|++-.||- .|....| || .+.|.-+.....|.-.+..+ ....|..+
T Consensus 55 fd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~F--i~vM~G~~e~~ipGnal~vd-------~~~pF~gL 125 (532)
T KOG1954|consen 55 FDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRF--IAVMHGDEEGSIPGNALVVD-------AKKPFRGL 125 (532)
T ss_pred cccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCccee--EEEEecCcccccCCceeeec-------CCCchhhh
Confidence 4567999999999999999999999999981 1222222 22 11121111111121111111 11223333
Q ss_pred HHHHHHHHhhhhhccCCCccccceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeE
Q 004351 98 QSFIEAENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIIL 177 (759)
Q Consensus 98 ~~~Ie~~~~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL 177 (759)
..+=..-..+. .+..+..+-+...||||+|||-+.....-++ .-..-..+.=|+.+-+.|||
T Consensus 126 ~~FG~aflnRf-------------~csqmp~~vLe~vtiVdtPGILsgeKQrisR-----~ydF~~v~~WFaeR~D~IiL 187 (532)
T KOG1954|consen 126 NKFGNAFLNRF-------------MCSQLPNQVLESVTIVDTPGILSGEKQRISR-----GYDFTGVLEWFAERVDRIIL 187 (532)
T ss_pred hhhHHHHHHHH-------------HHhcCChhhhhheeeeccCcccccchhcccc-----cCChHHHHHHHHHhccEEEE
Confidence 32211111111 1223333345679999999998765321111 01122445556777777777
Q ss_pred eeccc-CCcCcHHHHHHHHHhCcCCCeEEEEecCCCccccc
Q 004351 178 CLEDC-SDWSNATTRRVVMQIDPELKRTIIVSTKLDTKIPQ 217 (759)
Q Consensus 178 ~V~~~-~D~~~~~~l~lar~~Dp~g~RTIgVlTK~D~~~~~ 217 (759)
+.-+. -|+.. +.-+.+..+.-.-..+-.|++|+|.+.++
T Consensus 188 lfD~hKLDIsd-Ef~~vi~aLkG~EdkiRVVLNKADqVdtq 227 (532)
T KOG1954|consen 188 LFDAHKLDISD-EFKRVIDALKGHEDKIRVVLNKADQVDTQ 227 (532)
T ss_pred EechhhccccH-HHHHHHHHhhCCcceeEEEeccccccCHH
Confidence 76543 24332 33445555655556788999999998665
No 185
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=97.68 E-value=0.00017 Score=81.25 Aligned_cols=82 Identities=16% Similarity=0.163 Sum_probs=46.5
Q ss_pred ccccceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHHHH
Q 004351 116 QFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVM 195 (759)
Q Consensus 116 ~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar 195 (759)
+.+-+...+.++.. ...++||||||... -+.+|+.. +...+.++|+| ++.+-......+.+.
T Consensus 60 G~Ti~~~~~~~~~~-~~~~~liDtpGh~~---------------f~~~~~~~-~~~~D~~ilVv-da~~g~~~qt~e~l~ 121 (394)
T TIGR00485 60 GITINTAHVEYETE-NRHYAHVDCPGHAD---------------YVKNMITG-AAQMDGAILVV-SATDGPMPQTREHIL 121 (394)
T ss_pred CcceeeEEEEEcCC-CEEEEEEECCchHH---------------HHHHHHHH-HhhCCEEEEEE-ECCCCCcHHHHHHHH
Confidence 45545555555432 24689999999721 12344332 34566666655 443322334445555
Q ss_pred HhCcCCCeEE-EEecCCCccc
Q 004351 196 QIDPELKRTI-IVSTKLDTKI 215 (759)
Q Consensus 196 ~~Dp~g~RTI-gVlTK~D~~~ 215 (759)
.+...|...+ .|+||+|+..
T Consensus 122 ~~~~~gi~~iIvvvNK~Dl~~ 142 (394)
T TIGR00485 122 LARQVGVPYIVVFLNKCDMVD 142 (394)
T ss_pred HHHHcCCCEEEEEEEecccCC
Confidence 5555566655 6899999864
No 186
>PRK12739 elongation factor G; Reviewed
Probab=97.68 E-value=0.00016 Score=87.16 Aligned_cols=82 Identities=18% Similarity=0.166 Sum_probs=52.6
Q ss_pred ccccceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHHHH
Q 004351 116 QFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVM 195 (759)
Q Consensus 116 ~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar 195 (759)
+++-+...+.++.. ...++||||||... ....+..++...+.+|++| ++.+........+++
T Consensus 58 giti~~~~~~~~~~-~~~i~liDTPG~~~----------------f~~e~~~al~~~D~~ilVv-Da~~g~~~qt~~i~~ 119 (691)
T PRK12739 58 GITITSAATTCFWK-GHRINIIDTPGHVD----------------FTIEVERSLRVLDGAVAVF-DAVSGVEPQSETVWR 119 (691)
T ss_pred CCCccceeEEEEEC-CEEEEEEcCCCHHH----------------HHHHHHHHHHHhCeEEEEE-eCCCCCCHHHHHHHH
Confidence 34444444455443 35799999999732 0123566666677666555 443333455567777
Q ss_pred HhCcCCCeEEEEecCCCccc
Q 004351 196 QIDPELKRTIIVSTKLDTKI 215 (759)
Q Consensus 196 ~~Dp~g~RTIgVlTK~D~~~ 215 (759)
.+...|...|.|+||+|+..
T Consensus 120 ~~~~~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 120 QADKYGVPRIVFVNKMDRIG 139 (691)
T ss_pred HHHHcCCCEEEEEECCCCCC
Confidence 77777889999999999963
No 187
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=97.67 E-value=0.00021 Score=75.50 Aligned_cols=25 Identities=32% Similarity=0.618 Sum_probs=23.3
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.|||+|+.++|||||++.+++-+|+
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f~ 26 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRFE 26 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCC
Confidence 5899999999999999999988886
No 188
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=97.67 E-value=0.00014 Score=71.21 Aligned_cols=26 Identities=27% Similarity=0.402 Sum_probs=24.0
Q ss_pred CEEEEEeccCCchHHHHHHHhCCccc
Q 004351 25 PAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
..|+|+|+.++|||||+..+.+-.|+
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~ 27 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFP 27 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 57999999999999999999998876
No 189
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=97.66 E-value=0.00012 Score=88.09 Aligned_cols=81 Identities=19% Similarity=0.155 Sum_probs=51.3
Q ss_pred cccceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHHHHH
Q 004351 117 FSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQ 196 (759)
Q Consensus 117 fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~ 196 (759)
++-+.....++..+ ..++||||||...-. ..+..+++..+.+|++|. +.+-.......+.+.
T Consensus 61 iti~~~~~~~~~~~-~~i~liDTPG~~~~~----------------~~~~~~l~~~D~~ilVvd-a~~g~~~~~~~~~~~ 122 (689)
T TIGR00484 61 ITITSAATTVFWKG-HRINIIDTPGHVDFT----------------VEVERSLRVLDGAVAVLD-AVGGVQPQSETVWRQ 122 (689)
T ss_pred CCEecceEEEEECC-eEEEEEECCCCcchh----------------HHHHHHHHHhCEEEEEEe-CCCCCChhHHHHHHH
Confidence 44344445555543 579999999995411 134566767776666654 433233344556666
Q ss_pred hCcCCCeEEEEecCCCccc
Q 004351 197 IDPELKRTIIVSTKLDTKI 215 (759)
Q Consensus 197 ~Dp~g~RTIgVlTK~D~~~ 215 (759)
+...+...|.|+||+|+..
T Consensus 123 ~~~~~~p~ivviNK~D~~~ 141 (689)
T TIGR00484 123 ANRYEVPRIAFVNKMDKTG 141 (689)
T ss_pred HHHcCCCEEEEEECCCCCC
Confidence 6666788999999999863
No 190
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=97.66 E-value=0.0001 Score=72.39 Aligned_cols=25 Identities=24% Similarity=0.473 Sum_probs=22.1
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.|+|+|++++|||||++.++.-.|.
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~ 26 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGEFE 26 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC
Confidence 5899999999999999999866653
No 191
>PRK12736 elongation factor Tu; Reviewed
Probab=97.65 E-value=0.00024 Score=80.02 Aligned_cols=81 Identities=15% Similarity=0.168 Sum_probs=44.5
Q ss_pred ccccceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHHHH
Q 004351 116 QFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVM 195 (759)
Q Consensus 116 ~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar 195 (759)
+.+-+...+..+. ....++|||+||.. +.+.+|+.. +...+.++|+|. +.+-......+.++
T Consensus 60 g~T~~~~~~~~~~-~~~~i~~iDtPGh~---------------~f~~~~~~~-~~~~d~~llVvd-~~~g~~~~t~~~~~ 121 (394)
T PRK12736 60 GITINTAHVEYET-EKRHYAHVDCPGHA---------------DYVKNMITG-AAQMDGAILVVA-ATDGPMPQTREHIL 121 (394)
T ss_pred CccEEEEeeEecC-CCcEEEEEECCCHH---------------HHHHHHHHH-HhhCCEEEEEEE-CCCCCchhHHHHHH
Confidence 3444444344333 23478999999952 223345444 345566665554 43222333444444
Q ss_pred HhCcCCCe-EEEEecCCCcc
Q 004351 196 QIDPELKR-TIIVSTKLDTK 214 (759)
Q Consensus 196 ~~Dp~g~R-TIgVlTK~D~~ 214 (759)
.+...|.. .|.|+||+|+.
T Consensus 122 ~~~~~g~~~~IvviNK~D~~ 141 (394)
T PRK12736 122 LARQVGVPYLVVFLNKVDLV 141 (394)
T ss_pred HHHHcCCCEEEEEEEecCCc
Confidence 44445665 57889999986
No 192
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=97.65 E-value=0.00025 Score=71.89 Aligned_cols=66 Identities=18% Similarity=0.196 Sum_probs=43.9
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccC--CcCc-HHHHHHHHHhCcCCCeEEEEe
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCS--DWSN-ATTRRVVMQIDPELKRTIIVS 208 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~--D~~~-~~~l~lar~~Dp~g~RTIgVl 208 (759)
..|.|.||||-.. ...|...|.+..+.+||++...+ .+.+ ..+++.++...| ....|.|.
T Consensus 55 ~~l~iwDt~G~~~----------------~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~-~~piilVG 117 (189)
T cd04121 55 VKLQLWDTSGQGR----------------FCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAP-GVPKILVG 117 (189)
T ss_pred EEEEEEeCCCcHH----------------HHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEE
Confidence 4578899999732 33677889999998888874322 1111 224444455444 57889999
Q ss_pred cCCCcc
Q 004351 209 TKLDTK 214 (759)
Q Consensus 209 TK~D~~ 214 (759)
||.|+.
T Consensus 118 NK~DL~ 123 (189)
T cd04121 118 NRLHLA 123 (189)
T ss_pred ECccch
Confidence 999985
No 193
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=97.64 E-value=0.00018 Score=81.34 Aligned_cols=80 Identities=9% Similarity=0.166 Sum_probs=46.8
Q ss_pred ccccceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcC--cHHHHHH
Q 004351 116 QFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWS--NATTRRV 193 (759)
Q Consensus 116 ~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~--~~~~l~l 193 (759)
++|-+.....++.++ ..++||||||.. +.+.+|+.. +...+.+||+|.+...+. +.+.+.+
T Consensus 65 giTid~~~~~~~~~~-~~~~liDtPGh~---------------~f~~~~~~~-~~~aD~allVVda~~G~~~qt~~~~~~ 127 (406)
T TIGR02034 65 GITIDVAYRYFSTDK-RKFIVADTPGHE---------------QYTRNMATG-ASTADLAVLLVDARKGVLEQTRRHSYI 127 (406)
T ss_pred CcCeEeeeEEEccCC-eEEEEEeCCCHH---------------HHHHHHHHH-HhhCCEEEEEEECCCCCccccHHHHHH
Confidence 444454444554443 478999999952 123344443 456776766664433332 3334555
Q ss_pred HHHhCcCCCeEEEEecCCCcc
Q 004351 194 VMQIDPELKRTIIVSTKLDTK 214 (759)
Q Consensus 194 ar~~Dp~g~RTIgVlTK~D~~ 214 (759)
++.+. ..+.|.|+||+|+.
T Consensus 128 ~~~~~--~~~iivviNK~D~~ 146 (406)
T TIGR02034 128 ASLLG--IRHVVLAVNKMDLV 146 (406)
T ss_pred HHHcC--CCcEEEEEEecccc
Confidence 65553 23578899999986
No 194
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=97.64 E-value=0.00012 Score=71.64 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=23.2
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.|+|+|+.++|||||++.+.+-.|+
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~~ 26 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAFP 26 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC
Confidence 5899999999999999999998876
No 195
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=97.63 E-value=0.00023 Score=84.21 Aligned_cols=66 Identities=23% Similarity=0.167 Sum_probs=41.6
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHHHHHhCcCCCeEEEEecCC
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKL 211 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~RTIgVlTK~ 211 (759)
..++|+||||... ...++..|++..+.+||+|........+. ..........+...|.|+||.
T Consensus 70 ~~l~liDTPG~~d----------------F~~~v~~~l~~aD~aILVvDat~g~~~qt-~~~~~~~~~~~ipiIiViNKi 132 (595)
T TIGR01393 70 YVLNLIDTPGHVD----------------FSYEVSRSLAACEGALLLVDAAQGIEAQT-LANVYLALENDLEIIPVINKI 132 (595)
T ss_pred EEEEEEECCCcHH----------------HHHHHHHHHHhCCEEEEEecCCCCCCHhH-HHHHHHHHHcCCCEEEEEECc
Confidence 4689999999943 22456678888888877664433333322 222111112356799999999
Q ss_pred Ccc
Q 004351 212 DTK 214 (759)
Q Consensus 212 D~~ 214 (759)
|+.
T Consensus 133 Dl~ 135 (595)
T TIGR01393 133 DLP 135 (595)
T ss_pred CCC
Confidence 984
No 196
>PRK12735 elongation factor Tu; Reviewed
Probab=97.62 E-value=0.00026 Score=79.84 Aligned_cols=66 Identities=17% Similarity=0.175 Sum_probs=39.4
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHHHHHhCcCCCeEE-EEecC
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTI-IVSTK 210 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~RTI-gVlTK 210 (759)
..++||||||.. +.+.+|+.. +...+.++|+|.+...+. ....+.+..+...|.+.| .|+||
T Consensus 75 ~~i~~iDtPGh~---------------~f~~~~~~~-~~~aD~~llVvda~~g~~-~qt~e~l~~~~~~gi~~iivvvNK 137 (396)
T PRK12735 75 RHYAHVDCPGHA---------------DYVKNMITG-AAQMDGAILVVSAADGPM-PQTREHILLARQVGVPYIVVFLNK 137 (396)
T ss_pred cEEEEEECCCHH---------------HHHHHHHhh-hccCCEEEEEEECCCCCc-hhHHHHHHHHHHcCCCeEEEEEEe
Confidence 468999999972 223344433 445666666554333233 334455555555666665 57999
Q ss_pred CCcc
Q 004351 211 LDTK 214 (759)
Q Consensus 211 ~D~~ 214 (759)
+|+.
T Consensus 138 ~Dl~ 141 (396)
T PRK12735 138 CDMV 141 (396)
T ss_pred cCCc
Confidence 9986
No 197
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.62 E-value=0.00018 Score=72.00 Aligned_cols=112 Identities=16% Similarity=0.296 Sum_probs=69.9
Q ss_pred EEEEEeccCCchHHHHHHHhCCccceecCccccccceEEEEeeCCCCCCCceEEecCCCCCCcccccChHHHHHHHHHHH
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEIQSFIEAEN 105 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp~~g~g~cTR~P~~l~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~l~~~Ie~~~ 105 (759)
.||++|+.++|||||+..+.+-.|+.. - .||.- +
T Consensus 3 Kiv~vG~~~vGKTsli~~~~~~~f~~~--~----~~t~~------------------~---------------------- 36 (178)
T cd04131 3 KIVVVGDVQCGKTALLQVFAKDCYPET--Y----VPTVF------------------E---------------------- 36 (178)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCCC--c----CCceE------------------E----------------------
Confidence 599999999999999999999888721 0 11100 0
Q ss_pred hhhhhccCCCccccceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeeccc--C
Q 004351 106 MRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDC--S 183 (759)
Q Consensus 106 ~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~--~ 183 (759)
.|+ ..+++.+ ....|.|.||||-.. ...+...|.++.+.+||+..-. .
T Consensus 37 ----------~~~---~~~~~~~-~~~~l~iwDt~G~~~----------------~~~~~~~~~~~a~~~ilvfdit~~~ 86 (178)
T cd04131 37 ----------NYT---ASFEIDE-QRIELSLWDTSGSPY----------------YDNVRPLCYPDSDAVLICFDISRPE 86 (178)
T ss_pred ----------EEE---EEEEECC-EEEEEEEEECCCchh----------------hhhcchhhcCCCCEEEEEEECCChh
Confidence 010 0112221 123688899999522 1245556888888888776422 1
Q ss_pred CcCc--HHHHHHHHHhCcCCCeEEEEecCCCcc
Q 004351 184 DWSN--ATTRRVVMQIDPELKRTIIVSTKLDTK 214 (759)
Q Consensus 184 D~~~--~~~l~lar~~Dp~g~RTIgVlTK~D~~ 214 (759)
-+.+ ..+...+++..| ....|.|.||.|+.
T Consensus 87 Sf~~~~~~w~~~i~~~~~-~~~iilVgnK~DL~ 118 (178)
T cd04131 87 TLDSVLKKWRGEIQEFCP-NTKVLLVGCKTDLR 118 (178)
T ss_pred hHHHHHHHHHHHHHHHCC-CCCEEEEEEChhhh
Confidence 2222 235555666665 47899999999984
No 198
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=97.60 E-value=0.00021 Score=84.62 Aligned_cols=70 Identities=16% Similarity=0.221 Sum_probs=43.7
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcC-ccceeEeecccCCcCcHHHHHHHHHhCcCCCeEEEEecCC
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQH-REFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKL 211 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~-~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~RTIgVlTK~ 211 (759)
.+.++||||...-.... .-+.+.+.|+.. .-.+++.|.|+++.. ..+.+..++...+.+.|.|+||.
T Consensus 42 ~i~lvDtPG~~~~~~~s----------~~e~v~~~~l~~~~aDvvI~VvDat~le--r~l~l~~ql~~~~~PiIIVlNK~ 109 (591)
T TIGR00437 42 DIEIVDLPGIYSLTTFS----------LEEEVARDYLLNEKPDLVVNVVDASNLE--RNLYLTLQLLELGIPMILALNLV 109 (591)
T ss_pred EEEEEECCCccccCccc----------hHHHHHHHHHhhcCCCEEEEEecCCcch--hhHHHHHHHHhcCCCEEEEEehh
Confidence 47899999996542211 112455666653 234555566654432 23555556655688999999999
Q ss_pred Ccc
Q 004351 212 DTK 214 (759)
Q Consensus 212 D~~ 214 (759)
|+.
T Consensus 110 Dl~ 112 (591)
T TIGR00437 110 DEA 112 (591)
T ss_pred HHH
Confidence 985
No 199
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.59 E-value=0.00034 Score=73.38 Aligned_cols=65 Identities=17% Similarity=0.313 Sum_probs=43.5
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccC--CcCc--HHHHHHHHHhCcCCCeEEEEe
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCS--DWSN--ATTRRVVMQIDPELKRTIIVS 208 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~--D~~~--~~~l~lar~~Dp~g~RTIgVl 208 (759)
.|.|.||||-. ..+.+...|+++.+.+|||..-.+ -+.+ ..+...++...| ....|.|.
T Consensus 62 ~l~iwDTaG~e----------------~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~-~~piilVg 124 (232)
T cd04174 62 ELSLWDTSGSP----------------YYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCP-STRILLIG 124 (232)
T ss_pred EEEEEeCCCch----------------hhHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCC-CCCEEEEE
Confidence 57889999852 123566779999998887764221 1222 234556666655 46789999
Q ss_pred cCCCcc
Q 004351 209 TKLDTK 214 (759)
Q Consensus 209 TK~D~~ 214 (759)
||.|+.
T Consensus 125 NK~DL~ 130 (232)
T cd04174 125 CKTDLR 130 (232)
T ss_pred ECcccc
Confidence 999974
No 200
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=97.58 E-value=0.00043 Score=66.71 Aligned_cols=67 Identities=24% Similarity=0.251 Sum_probs=45.5
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccC--CcC-cHHHHHHHHHhCcCCCeEEEEec
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCS--DWS-NATTRRVVMQIDPELKRTIIVST 209 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~--D~~-~~~~l~lar~~Dp~g~RTIgVlT 209 (759)
.|.|.|+||-.. ...+...++++.+.+|++....+ -+. -..++...+...+.....+.|.|
T Consensus 49 ~l~i~D~~g~~~----------------~~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~ 112 (162)
T PF00071_consen 49 NLEIWDTSGQER----------------FDSLRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGN 112 (162)
T ss_dssp EEEEEEETTSGG----------------GHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEE
T ss_pred cccccccccccc----------------ccccccccccccccccccccccccccccccccccccccccccccccceeeec
Confidence 678899998521 12455677888998888874221 111 12456667777776678999999
Q ss_pred CCCccc
Q 004351 210 KLDTKI 215 (759)
Q Consensus 210 K~D~~~ 215 (759)
|.|+..
T Consensus 113 K~D~~~ 118 (162)
T PF00071_consen 113 KSDLSD 118 (162)
T ss_dssp TTTGGG
T ss_pred cccccc
Confidence 999864
No 201
>PLN03126 Elongation factor Tu; Provisional
Probab=97.58 E-value=0.00048 Score=79.49 Aligned_cols=81 Identities=14% Similarity=0.161 Sum_probs=45.9
Q ss_pred cccceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHHHHH
Q 004351 117 FSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQ 196 (759)
Q Consensus 117 fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~ 196 (759)
++-+.....++.. ...++|||+||.. +.+.+|+.. +...+..+|+|. +.+-......+.++.
T Consensus 130 iTi~~~~~~~~~~-~~~i~liDtPGh~---------------~f~~~~~~g-~~~aD~ailVVd-a~~G~~~qt~e~~~~ 191 (478)
T PLN03126 130 ITINTATVEYETE-NRHYAHVDCPGHA---------------DYVKNMITG-AAQMDGAILVVS-GADGPMPQTKEHILL 191 (478)
T ss_pred eeEEEEEEEEecC-CcEEEEEECCCHH---------------HHHHHHHHH-HhhCCEEEEEEE-CCCCCcHHHHHHHHH
Confidence 3334334444433 3478999999972 223355443 345666666554 332223334444444
Q ss_pred hCcCCCe-EEEEecCCCccc
Q 004351 197 IDPELKR-TIIVSTKLDTKI 215 (759)
Q Consensus 197 ~Dp~g~R-TIgVlTK~D~~~ 215 (759)
++-.|.+ .|.|+||+|+..
T Consensus 192 ~~~~gi~~iIvvvNK~Dl~~ 211 (478)
T PLN03126 192 AKQVGVPNMVVFLNKQDQVD 211 (478)
T ss_pred HHHcCCCeEEEEEecccccC
Confidence 5555665 778999999964
No 202
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=97.56 E-value=0.00029 Score=69.96 Aligned_cols=65 Identities=18% Similarity=0.315 Sum_probs=42.1
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccC--CcCcH--HHHHHHHHhCcCCCeEEEEe
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCS--DWSNA--TTRRVVMQIDPELKRTIIVS 208 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~--D~~~~--~~l~lar~~Dp~g~RTIgVl 208 (759)
.|.|.|+||-... ..+-..|+++.+.+|||+...+ .+.+. .+....+...| ....|.|.
T Consensus 50 ~l~i~Dt~G~~~~----------------~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~-~~piilvg 112 (175)
T cd01874 50 TLGLFDTAGQEDY----------------DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVG 112 (175)
T ss_pred EEEEEECCCccch----------------hhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEE
Confidence 5789999998432 1344568888998888874322 12221 24444554444 47899999
Q ss_pred cCCCcc
Q 004351 209 TKLDTK 214 (759)
Q Consensus 209 TK~D~~ 214 (759)
||.|+.
T Consensus 113 nK~Dl~ 118 (175)
T cd01874 113 TQIDLR 118 (175)
T ss_pred ECHhhh
Confidence 999984
No 203
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=97.55 E-value=0.00036 Score=70.01 Aligned_cols=66 Identities=15% Similarity=0.111 Sum_probs=41.9
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCC--cCc-HHHHHHHHHhCcCCCeEEEEe
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSD--WSN-ATTRRVVMQIDPELKRTIIVS 208 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D--~~~-~~~l~lar~~Dp~g~RTIgVl 208 (759)
..|.|.|++|-.. ...+...|+++.+.+++++..++. +.+ ..++..++...+.... |.|.
T Consensus 49 ~~l~iwDt~G~~~----------------~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVg 111 (182)
T cd04128 49 ITFSIWDLGGQRE----------------FINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVG 111 (182)
T ss_pred EEEEEEeCCCchh----------------HHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEE
Confidence 3677899998622 235667788888888877743221 111 2345556665554444 7899
Q ss_pred cCCCcc
Q 004351 209 TKLDTK 214 (759)
Q Consensus 209 TK~D~~ 214 (759)
||.|+.
T Consensus 112 nK~Dl~ 117 (182)
T cd04128 112 TKYDLF 117 (182)
T ss_pred Echhcc
Confidence 999985
No 204
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=97.54 E-value=0.00025 Score=81.88 Aligned_cols=28 Identities=29% Similarity=0.298 Sum_probs=24.7
Q ss_pred CCCCCEEEEEeccCCchHHHHHHHhCCc
Q 004351 21 PFDAPAVLVVGHQTDGKSALVEALMGFQ 48 (759)
Q Consensus 21 ~i~lPqIVVVG~QSsGKSSLLEAL~G~~ 48 (759)
.-+...|||||+.++|||||+++|+...
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~ 51 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDT 51 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhc
Confidence 4566899999999999999999998764
No 205
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=97.54 E-value=0.00027 Score=75.88 Aligned_cols=37 Identities=27% Similarity=0.176 Sum_probs=29.1
Q ss_pred EEEEeccCCchHHHHHHHhCCccceecCccccccceE
Q 004351 27 VLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPIT 63 (759)
Q Consensus 27 IVVVG~QSsGKSSLLEAL~G~~fp~~g~g~cTR~P~~ 63 (759)
|.+||-.++|||||+|+|+|.......-..||+-|..
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~ 37 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNV 37 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhcee
Confidence 5789999999999999999999754444556666643
No 206
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=97.54 E-value=0.00035 Score=81.56 Aligned_cols=73 Identities=12% Similarity=0.181 Sum_probs=47.0
Q ss_pred EEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHHHHHhCcCCCe
Q 004351 124 IKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKR 203 (759)
Q Consensus 124 leI~~p~~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~R 203 (759)
+.+.+.+ ..++|+||||...- ...+..++...+.+|++|.+...+. .....+.+..+..+..
T Consensus 72 ~~~~~~~-~~inliDTPG~~df----------------~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~~~iP 133 (526)
T PRK00741 72 MQFPYRD-CLINLLDTPGHEDF----------------SEDTYRTLTAVDSALMVIDAAKGVE-PQTRKLMEVCRLRDTP 133 (526)
T ss_pred EEEEECC-EEEEEEECCCchhh----------------HHHHHHHHHHCCEEEEEEecCCCCC-HHHHHHHHHHHhcCCC
Confidence 3444432 46999999997321 1345667777888877664433333 2344555555556788
Q ss_pred EEEEecCCCcc
Q 004351 204 TIIVSTKLDTK 214 (759)
Q Consensus 204 TIgVlTK~D~~ 214 (759)
.|.|+||.|+.
T Consensus 134 iiv~iNK~D~~ 144 (526)
T PRK00741 134 IFTFINKLDRD 144 (526)
T ss_pred EEEEEECCccc
Confidence 99999999984
No 207
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=97.53 E-value=0.00032 Score=72.67 Aligned_cols=25 Identities=24% Similarity=0.441 Sum_probs=22.1
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.|++||+.++|||||++.+++-.|.
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~~~~~ 26 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTSGEYD 26 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCcC
Confidence 6999999999999999999865553
No 208
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=97.53 E-value=0.045 Score=66.66 Aligned_cols=87 Identities=16% Similarity=0.146 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhhhhhhHHHHHHHHhhcccchhh--------------------hhch
Q 004351 650 RIVYALVQQIFHGIREYFLASAELKFNCFLLMPVVDKLPALLREDLESAFEGDLDN--------------------VFDI 709 (759)
Q Consensus 650 ~~V~~l~~~~f~~iR~~~~~~~~~k~n~ffL~P~~~~l~~~l~~~l~~~~~~~~~~--------------------~f~~ 709 (759)
.-+..|++++...++..+...|..-|+.- -.++|..|+..+..+.+.-+.. -|..
T Consensus 421 ~el~~l~~~~eK~l~~~l~e~v~~~l~~~-----~~d~Wd~I~~~f~~~~~~~~~~~~~~~~~f~~s~~e~~~~~~~lr~ 495 (742)
T PF05879_consen 421 EELNELVARIEKKLKSELKEPVESLLENP-----SPDMWDRIRKLFESATESAVSKFSDRLKGFGLSEEENEKALKKLRR 495 (742)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHhCC-----ChhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Confidence 44567777777777777777777777662 2666666666666555432211 1211
Q ss_pred hhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 004351 710 TNLRHSLSQQKSDTEIEMKRIKKLKEKFKLIHE 742 (759)
Q Consensus 710 ~~~~~~l~~~~~~l~~~~~~~~~~~~kf~~~~~ 742 (759)
.++..|+.+-++...+-.-+.++++.|....+
T Consensus 496 -~aw~~l~~ki~e~~~~~~ll~~LkdRFe~~Fr 527 (742)
T PF05879_consen 496 -KAWSVLREKIREEASEDNLLIRLKDRFEDKFR 527 (742)
T ss_pred -HHHHHHHHHHHHHHhHhHHHHHHHHHHHHHhC
Confidence 22456666666666666777888888886654
No 209
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=97.52 E-value=0.00047 Score=71.66 Aligned_cols=25 Identities=28% Similarity=0.529 Sum_probs=23.0
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.|||||+.++|||||++.+++-.|+
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~f~ 26 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERRFK 26 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCC
Confidence 5899999999999999999988875
No 210
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=97.52 E-value=0.00024 Score=84.79 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=21.9
Q ss_pred CEEEEEeccCCchHHHHHHHhCCc
Q 004351 25 PAVLVVGHQTDGKSALVEALMGFQ 48 (759)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~~ 48 (759)
..||+||+.++|||||+++|++..
T Consensus 25 ~~i~iiGh~~~GKSTL~~~Ll~~~ 48 (632)
T PRK05506 25 LRFITCGSVDDGKSTLIGRLLYDS 48 (632)
T ss_pred eEEEEECCCCCChHHHHHHHHHHh
Confidence 469999999999999999999865
No 211
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=97.52 E-value=0.00021 Score=81.29 Aligned_cols=79 Identities=15% Similarity=0.148 Sum_probs=45.2
Q ss_pred ccccceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccC--CcCc--HHHH
Q 004351 116 QFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCS--DWSN--ATTR 191 (759)
Q Consensus 116 ~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~--D~~~--~~~l 191 (759)
+.+-+.....+...+ ..++|+||||... .+.+|+ ..+...+.+||+|.... .+.. ...+
T Consensus 69 G~T~d~~~~~~~~~~-~~i~liDtpG~~~---------------~~~~~~-~~~~~aD~~ilVvDa~~~~~~~~~~~~~~ 131 (425)
T PRK12317 69 GVTIDLAHKKFETDK-YYFTIVDCPGHRD---------------FVKNMI-TGASQADAAVLVVAADDAGGVMPQTREHV 131 (425)
T ss_pred CccceeeeEEEecCC-eEEEEEECCCccc---------------chhhHh-hchhcCCEEEEEEEcccCCCCCcchHHHH
Confidence 455565555665533 5799999999621 112333 23556776666554322 2222 2234
Q ss_pred HHHHHhCcCC-CeEEEEecCCCcc
Q 004351 192 RVVMQIDPEL-KRTIIVSTKLDTK 214 (759)
Q Consensus 192 ~lar~~Dp~g-~RTIgVlTK~D~~ 214 (759)
.+++.. + .+.|.|+||.|+.
T Consensus 132 ~~~~~~---~~~~iivviNK~Dl~ 152 (425)
T PRK12317 132 FLARTL---GINQLIVAINKMDAV 152 (425)
T ss_pred HHHHHc---CCCeEEEEEEccccc
Confidence 444443 4 3588999999986
No 212
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=97.52 E-value=0.00038 Score=69.13 Aligned_cols=65 Identities=26% Similarity=0.349 Sum_probs=41.2
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccC--CcCcH--HHHHHHHHhCcCCCeEEEEe
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCS--DWSNA--TTRRVVMQIDPELKRTIIVS 208 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~--D~~~~--~~l~lar~~Dp~g~RTIgVl 208 (759)
.|.|.||||-.. ...+...|+++.+.+|+++..++ .+.+. .+....+...+ ....|.|.
T Consensus 50 ~l~i~Dt~G~~~----------------~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~-~~piilvg 112 (174)
T cd01871 50 NLGLWDTAGQED----------------YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVG 112 (174)
T ss_pred EEEEEECCCchh----------------hhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEe
Confidence 567999999522 12455668888888888764322 11121 23444444444 57899999
Q ss_pred cCCCcc
Q 004351 209 TKLDTK 214 (759)
Q Consensus 209 TK~D~~ 214 (759)
||.|+.
T Consensus 113 nK~Dl~ 118 (174)
T cd01871 113 TKLDLR 118 (174)
T ss_pred eChhhc
Confidence 999984
No 213
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=97.51 E-value=0.00032 Score=79.38 Aligned_cols=23 Identities=39% Similarity=0.606 Sum_probs=21.0
Q ss_pred EEEEEeccCCchHHHHHHHhCCc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQ 48 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~ 48 (759)
.|+++|+.++|||||+++|+|..
T Consensus 6 ~i~iiG~~~~GKSTL~~~Lt~~~ 28 (406)
T TIGR03680 6 NIGMVGHVDHGKTTLTKALTGVW 28 (406)
T ss_pred EEEEEccCCCCHHHHHHHHhCee
Confidence 58999999999999999998753
No 214
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=97.50 E-value=0.00045 Score=69.46 Aligned_cols=66 Identities=14% Similarity=0.278 Sum_probs=44.2
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccC--CcCc--HHHHHHHHHhCcCCCeEEEE
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCS--DWSN--ATTRRVVMQIDPELKRTIIV 207 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~--D~~~--~~~l~lar~~Dp~g~RTIgV 207 (759)
..|.|.||+|-.. ...+...|+++.+.+|||+.-.+ .+.+ ..+...+++..| ....|.|
T Consensus 53 ~~l~iwDtaG~e~----------------~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~-~~piilV 115 (182)
T cd04172 53 IELSLWDTSGSPY----------------YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLV 115 (182)
T ss_pred EEEEEEECCCchh----------------hHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEEE
Confidence 3578899998521 23566678999998888774222 2222 235556666665 4789999
Q ss_pred ecCCCcc
Q 004351 208 STKLDTK 214 (759)
Q Consensus 208 lTK~D~~ 214 (759)
.||.|+.
T Consensus 116 gNK~DL~ 122 (182)
T cd04172 116 GCKSDLR 122 (182)
T ss_pred eEChhhh
Confidence 9999984
No 215
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=97.49 E-value=0.00042 Score=68.32 Aligned_cols=26 Identities=38% Similarity=0.618 Sum_probs=24.0
Q ss_pred CEEEEEeccCCchHHHHHHHhCCccc
Q 004351 25 PAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
-.|+++|+.++|||||++.+++-.|+
T Consensus 5 ~kv~~vG~~~vGKTsli~~~~~~~f~ 30 (169)
T cd01892 5 FLCFVLGAKGSGKSALLRAFLGRSFS 30 (169)
T ss_pred EEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 46999999999999999999998886
No 216
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.49 E-value=0.00018 Score=72.41 Aligned_cols=26 Identities=38% Similarity=0.454 Sum_probs=23.6
Q ss_pred CEEEEEeccCCchHHHHHHHhCCccc
Q 004351 25 PAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
..+++||..++|||||+|+|.+....
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~~ 153 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDNG 153 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhccc
Confidence 57999999999999999999988753
No 217
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=97.48 E-value=0.00063 Score=79.80 Aligned_cols=119 Identities=21% Similarity=0.264 Sum_probs=75.2
Q ss_pred CEEEEEeccCCchHHHHHHHhCCccceecCccccccceEEEEeeCCCCCCCceEEecCCCCCCcccccChHHHHHHHHHH
Q 004351 25 PAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEIQSFIEAE 104 (759)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~~fp~~g~g~cTR~P~~l~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~l~~~Ie~~ 104 (759)
.+++.+|+.++||||+.|+|+|-..- +|. . |.+++... +
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q~-VgN-----------------w--pGvTVEkk--------e------------- 42 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQK-VGN-----------------W--PGVTVEKK--------E------------- 42 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCce-ecC-----------------C--CCeeEEEE--------E-------------
Confidence 45999999999999999999998864 331 0 12222110 0
Q ss_pred HhhhhhccCCCccccceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCcc-ceeEeecccC
Q 004351 105 NMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHRE-FIILCLEDCS 183 (759)
Q Consensus 105 ~~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~-~IIL~V~~~~ 183 (759)
| .++.. ....++|||||+.+-..... -+..+++|+.+.+ .+|+.|+|+.
T Consensus 43 -----g------------~~~~~---~~~i~ivDLPG~YSL~~~S~----------DE~Var~~ll~~~~D~ivnVvDAt 92 (653)
T COG0370 43 -----G------------KLKYK---GHEIEIVDLPGTYSLTAYSE----------DEKVARDFLLEGKPDLIVNVVDAT 92 (653)
T ss_pred -----E------------EEEec---CceEEEEeCCCcCCCCCCCc----------hHHHHHHHHhcCCCCEEEEEcccc
Confidence 0 11111 12478999999987543221 2367788887444 7788888764
Q ss_pred CcCcHHHHHHHHHhCcCCCeEEEEecCCCcccc
Q 004351 184 DWSNATTRRVVMQIDPELKRTIIVSTKLDTKIP 216 (759)
Q Consensus 184 D~~~~~~l~lar~~Dp~g~RTIgVlTK~D~~~~ 216 (759)
.+.. .+.+.-++=.-|..+|.++|+.|...+
T Consensus 93 nLeR--nLyltlQLlE~g~p~ilaLNm~D~A~~ 123 (653)
T COG0370 93 NLER--NLYLTLQLLELGIPMILALNMIDEAKK 123 (653)
T ss_pred hHHH--HHHHHHHHHHcCCCeEEEeccHhhHHh
Confidence 3322 244444444457779999999998644
No 218
>PRK00007 elongation factor G; Reviewed
Probab=97.48 E-value=0.00034 Score=84.36 Aligned_cols=82 Identities=18% Similarity=0.146 Sum_probs=51.1
Q ss_pred ccccceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHHHH
Q 004351 116 QFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVM 195 (759)
Q Consensus 116 ~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar 195 (759)
+++-+...+.+... ...++||||||...- .. + +..-+..-+.++| |+++.+....+...+++
T Consensus 60 g~ti~~~~~~~~~~-~~~~~liDTPG~~~f-----------~~----e-v~~al~~~D~~vl-Vvda~~g~~~qt~~~~~ 121 (693)
T PRK00007 60 GITITSAATTCFWK-DHRINIIDTPGHVDF-----------TI----E-VERSLRVLDGAVA-VFDAVGGVEPQSETVWR 121 (693)
T ss_pred CCCEeccEEEEEEC-CeEEEEEeCCCcHHH-----------HH----H-HHHHHHHcCEEEE-EEECCCCcchhhHHHHH
Confidence 34444444455554 358999999997321 11 1 2333344455554 44554444556677777
Q ss_pred HhCcCCCeEEEEecCCCccc
Q 004351 196 QIDPELKRTIIVSTKLDTKI 215 (759)
Q Consensus 196 ~~Dp~g~RTIgVlTK~D~~~ 215 (759)
.+...|...|.|+||+|+..
T Consensus 122 ~~~~~~~p~iv~vNK~D~~~ 141 (693)
T PRK00007 122 QADKYKVPRIAFVNKMDRTG 141 (693)
T ss_pred HHHHcCCCEEEEEECCCCCC
Confidence 77778889999999999864
No 219
>PRK05433 GTP-binding protein LepA; Provisional
Probab=97.47 E-value=0.00064 Score=80.64 Aligned_cols=66 Identities=23% Similarity=0.164 Sum_probs=42.3
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHHHHHhCcCCCeEEEEecCC
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKL 211 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~RTIgVlTK~ 211 (759)
..++|+||||... ....+..|++..+.+||+|.....+..+ .......+...+...|.|+||.
T Consensus 74 ~~lnLiDTPGh~d----------------F~~~v~~sl~~aD~aILVVDas~gv~~q-t~~~~~~~~~~~lpiIvViNKi 136 (600)
T PRK05433 74 YILNLIDTPGHVD----------------FSYEVSRSLAACEGALLVVDASQGVEAQ-TLANVYLALENDLEIIPVLNKI 136 (600)
T ss_pred EEEEEEECCCcHH----------------HHHHHHHHHHHCCEEEEEEECCCCCCHH-HHHHHHHHHHCCCCEEEEEECC
Confidence 4689999999943 1244667888888877766543333333 2222222223466799999999
Q ss_pred Ccc
Q 004351 212 DTK 214 (759)
Q Consensus 212 D~~ 214 (759)
|+.
T Consensus 137 Dl~ 139 (600)
T PRK05433 137 DLP 139 (600)
T ss_pred CCC
Confidence 984
No 220
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=97.46 E-value=0.00028 Score=69.38 Aligned_cols=25 Identities=20% Similarity=0.367 Sum_probs=22.5
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
+|+++|+.++|||||+..+.+-.|+
T Consensus 2 k~~i~G~~~~GKtsl~~~~~~~~~~ 26 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTNGYP 26 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC
Confidence 5899999999999999999887775
No 221
>COG2229 Predicted GTPase [General function prediction only]
Probab=97.46 E-value=0.0019 Score=64.69 Aligned_cols=141 Identities=11% Similarity=0.066 Sum_probs=85.4
Q ss_pred CCCCCEEEEEeccCCchHHHHHHHhCCccceecCccccccceEEEEeeCCCCCCCceEEecCCCCCCcccccChHHHHHH
Q 004351 21 PFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEIQSF 100 (759)
Q Consensus 21 ~i~lPqIVVVG~QSsGKSSLLEAL~G~~fp~~g~g~cTR~P~~l~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~l~~~ 100 (759)
.+--+.|||+|.+++||++++++|+-.+.+.+.. ..+ + ++. .+.+
T Consensus 7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~-~~~----------~-------------~s~-k~kr---------- 51 (187)
T COG2229 7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEA-DAS----------S-------------VSG-KGKR---------- 51 (187)
T ss_pred cccceeEEEEcccccchhhHHHHhhccccceeec-ccc----------c-------------ccc-cccc----------
Confidence 4556789999999999999999999998764321 000 0 000 0000
Q ss_pred HHHHHhhhhhccCCCccccceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeec
Q 004351 101 IEAENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLE 180 (759)
Q Consensus 101 Ie~~~~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~ 180 (759)
+ ..+..|.-.+++. +-..+.|+||||=-+ ..=|..-|.+....+|++|-
T Consensus 52 -----------~--tTva~D~g~~~~~--~~~~v~LfgtPGq~R----------------F~fm~~~l~~ga~gaivlVD 100 (187)
T COG2229 52 -----------P--TTVAMDFGSIELD--EDTGVHLFGTPGQER----------------FKFMWEILSRGAVGAIVLVD 100 (187)
T ss_pred -----------c--eeEeecccceEEc--CcceEEEecCCCcHH----------------HHHHHHHHhCCcceEEEEEe
Confidence 0 1222232233332 235789999999733 33566667777666665553
Q ss_pred ccCCcCcHHHHHHHHHhCcCC-CeEEEEecCCCcccccccChhhHHHhhCC
Q 004351 181 DCSDWSNATTRRVVMQIDPEL-KRTIIVSTKLDTKIPQFARASDVEVFLSP 230 (759)
Q Consensus 181 ~~~D~~~~~~l~lar~~Dp~g-~RTIgVlTK~D~~~~~~~~~~~~~~~L~~ 230 (759)
+++..+..+..+...+.-.. .+.+..+||.|+-.. -....+..+|.-
T Consensus 101 -ss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a--~ppe~i~e~l~~ 148 (187)
T COG2229 101 -SSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDA--LPPEKIREALKL 148 (187)
T ss_pred -cCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCC--CCHHHHHHHHHh
Confidence 33333336667766665555 789999999999532 234566666654
No 222
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=97.42 E-value=0.00063 Score=68.59 Aligned_cols=66 Identities=23% Similarity=0.307 Sum_probs=42.1
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccC--CcCcH--HHHHHHHHhCcCCCeEEEE
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCS--DWSNA--TTRRVVMQIDPELKRTIIV 207 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~--D~~~~--~~l~lar~~Dp~g~RTIgV 207 (759)
..|.|.||||--. .+.|...|.++.+.+|+++.-.+ -+.+. .+...++...+ +...|.|
T Consensus 51 ~~l~i~Dt~G~e~----------------~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~-~~piilv 113 (191)
T cd01875 51 VSLNLWDTAGQEE----------------YDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCP-NVPILLV 113 (191)
T ss_pred EEEEEEECCCchh----------------hhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEE
Confidence 4578899998722 33567778999998888764221 12221 23333344334 5788999
Q ss_pred ecCCCcc
Q 004351 208 STKLDTK 214 (759)
Q Consensus 208 lTK~D~~ 214 (759)
.||.|+.
T Consensus 114 gNK~DL~ 120 (191)
T cd01875 114 GTKKDLR 120 (191)
T ss_pred EeChhhh
Confidence 9999984
No 223
>PTZ00258 GTP-binding protein; Provisional
Probab=97.42 E-value=0.00048 Score=77.34 Aligned_cols=46 Identities=26% Similarity=0.105 Sum_probs=35.1
Q ss_pred CCCCCCCEEEEEeccCCchHHHHHHHhCCccceecCccccccceEE
Q 004351 19 ETPFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITL 64 (759)
Q Consensus 19 ~~~i~lPqIVVVG~QSsGKSSLLEAL~G~~fp~~g~g~cTR~P~~l 64 (759)
+....-.+|++||-.++|||||+|+|+|.......--.||+-|..-
T Consensus 16 ~~~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g 61 (390)
T PTZ00258 16 GRPGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTA 61 (390)
T ss_pred ccCCCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEE
Confidence 3445566899999999999999999999886543344567666643
No 224
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=97.36 E-value=0.00062 Score=77.46 Aligned_cols=80 Identities=14% Similarity=0.198 Sum_probs=46.8
Q ss_pred ccccceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCC---cCcH--HH
Q 004351 116 QFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSD---WSNA--TT 190 (759)
Q Consensus 116 ~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D---~~~~--~~ 190 (759)
+++-+.....+...+ ..++|+|+||.. +.+..+.. ++...+.+||+|..... ...+ ..
T Consensus 70 g~Tid~~~~~~~~~~-~~i~iiDtpGh~---------------~f~~~~~~-~~~~aD~~ilVvDa~~~~~~~~~~t~~~ 132 (426)
T TIGR00483 70 GVTIDVAHWKFETDK-YEVTIVDCPGHR---------------DFIKNMIT-GASQADAAVLVVAVGDGEFEVQPQTREH 132 (426)
T ss_pred CceEEEEEEEEccCC-eEEEEEECCCHH---------------HHHHHHHh-hhhhCCEEEEEEECCCCCcccCCchHHH
Confidence 455555555555443 479999999941 12234433 56778877777643321 2222 22
Q ss_pred HHHHHHhCcCCCeEEEEecCCCcc
Q 004351 191 RRVVMQIDPELKRTIIVSTKLDTK 214 (759)
Q Consensus 191 l~lar~~Dp~g~RTIgVlTK~D~~ 214 (759)
+.+++.+. ..+.|.|+||.|+.
T Consensus 133 ~~~~~~~~--~~~iIVviNK~Dl~ 154 (426)
T TIGR00483 133 AFLARTLG--INQLIVAINKMDSV 154 (426)
T ss_pred HHHHHHcC--CCeEEEEEEChhcc
Confidence 34555543 24688999999985
No 225
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=97.36 E-value=0.00051 Score=75.32 Aligned_cols=37 Identities=22% Similarity=0.161 Sum_probs=29.5
Q ss_pred EEEEeccCCchHHHHHHHhCCccceecCccccccceE
Q 004351 27 VLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPIT 63 (759)
Q Consensus 27 IVVVG~QSsGKSSLLEAL~G~~fp~~g~g~cTR~P~~ 63 (759)
|++||..|+|||||+++|++.++....--.||+-|+.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~ 37 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNV 37 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCcccccee
Confidence 5799999999999999999998753333347777764
No 226
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.35 E-value=0.00037 Score=66.89 Aligned_cols=25 Identities=36% Similarity=0.464 Sum_probs=22.7
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.++++|.+|+|||||+|+|.|..++
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~ 109 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKV 109 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCce
Confidence 7999999999999999999987654
No 227
>PRK09602 translation-associated GTPase; Reviewed
Probab=97.35 E-value=0.00042 Score=78.18 Aligned_cols=39 Identities=21% Similarity=0.114 Sum_probs=31.8
Q ss_pred CEEEEEeccCCchHHHHHHHhCCccceecCccccccceE
Q 004351 25 PAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPIT 63 (759)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~~fp~~g~g~cTR~P~~ 63 (759)
.+|++||..++|||||+|+|++-.+...+-..||+-|+.
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~ 40 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNV 40 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeee
Confidence 479999999999999999999998764344557777764
No 228
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.35 E-value=0.0009 Score=73.88 Aligned_cols=83 Identities=17% Similarity=0.172 Sum_probs=51.2
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCc-------------cceeEeecccCCcCcHHHHHHHHHhC
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHR-------------EFIILCLEDCSDWSNATTRRVVMQID 198 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~-------------~~IIL~V~~~~D~~~~~~l~lar~~D 198 (759)
.+||+|||||++..-..... -+...+-+++.-..|+..+ |+.+.++.+...--..-+..+.+++.
T Consensus 79 l~LtvidtPGfGD~vdns~~--w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~ 156 (366)
T KOG2655|consen 79 LNLTVIDTPGFGDAVDNSNC--WRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLS 156 (366)
T ss_pred EeeEEeccCCCccccccccc--chhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHh
Confidence 47899999999876533221 1233566667777887532 22333344544433344555666664
Q ss_pred cCCCeEEEEecCCCccccc
Q 004351 199 PELKRTIIVSTKLDTKIPQ 217 (759)
Q Consensus 199 p~g~RTIgVlTK~D~~~~~ 217 (759)
. .-..|.|+.|.|.+.++
T Consensus 157 ~-~vNiIPVI~KaD~lT~~ 174 (366)
T KOG2655|consen 157 K-KVNLIPVIAKADTLTKD 174 (366)
T ss_pred c-cccccceeeccccCCHH
Confidence 3 46799999999998654
No 229
>PRK13351 elongation factor G; Reviewed
Probab=97.31 E-value=0.0011 Score=80.11 Aligned_cols=68 Identities=21% Similarity=0.209 Sum_probs=46.3
Q ss_pred CCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHHHHHhCcCCCeEEEEecC
Q 004351 131 CPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTK 210 (759)
Q Consensus 131 ~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~RTIgVlTK 210 (759)
...+.|+||||... ...++..|++..+.+|+++.... -.......+.+.++..+.+.+.|+||
T Consensus 72 ~~~i~liDtPG~~d----------------f~~~~~~~l~~aD~~ilVvd~~~-~~~~~~~~~~~~~~~~~~p~iiviNK 134 (687)
T PRK13351 72 NHRINLIDTPGHID----------------FTGEVERSLRVLDGAVVVFDAVT-GVQPQTETVWRQADRYGIPRLIFINK 134 (687)
T ss_pred CEEEEEEECCCcHH----------------HHHHHHHHHHhCCEEEEEEeCCC-CCCHHHHHHHHHHHhcCCCEEEEEEC
Confidence 35799999999842 12456778888887777664332 22333445555566667889999999
Q ss_pred CCccc
Q 004351 211 LDTKI 215 (759)
Q Consensus 211 ~D~~~ 215 (759)
.|+..
T Consensus 135 ~D~~~ 139 (687)
T PRK13351 135 MDRVG 139 (687)
T ss_pred CCCCC
Confidence 99863
No 230
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=97.31 E-value=0.00093 Score=81.00 Aligned_cols=67 Identities=22% Similarity=0.214 Sum_probs=44.0
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHHHHHhCcCCCeEEEEecCC
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKL 211 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~RTIgVlTK~ 211 (759)
..+.||||||...-. ..+..++...+.+|++|.....+ ..+...+.+.+...+.+.|.|+||.
T Consensus 86 ~~i~liDTPG~~~f~----------------~~~~~al~~aD~~llVvda~~g~-~~~t~~~~~~~~~~~~p~ivviNKi 148 (720)
T TIGR00490 86 YLINLIDTPGHVDFG----------------GDVTRAMRAVDGAIVVVCAVEGV-MPQTETVLRQALKENVKPVLFINKV 148 (720)
T ss_pred eEEEEEeCCCccccH----------------HHHHHHHHhcCEEEEEEecCCCC-CccHHHHHHHHHHcCCCEEEEEECh
Confidence 578999999995421 23456777888888777433222 2333444554444566779999999
Q ss_pred Cccc
Q 004351 212 DTKI 215 (759)
Q Consensus 212 D~~~ 215 (759)
|+..
T Consensus 149 D~~~ 152 (720)
T TIGR00490 149 DRLI 152 (720)
T ss_pred hccc
Confidence 9864
No 231
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=97.31 E-value=0.00096 Score=77.97 Aligned_cols=74 Identities=12% Similarity=0.205 Sum_probs=44.8
Q ss_pred EEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHHHHHhCcCCC
Q 004351 123 IIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELK 202 (759)
Q Consensus 123 ~leI~~p~~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~ 202 (759)
.+.+.+. ...+.|+||||... ....+..++...+.+|++|.+...+.. ....+.+..+..+.
T Consensus 72 ~~~~~~~-~~~inliDTPG~~d----------------f~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~~~~ 133 (527)
T TIGR00503 72 VMQFPYR-DCLVNLLDTPGHED----------------FSEDTYRTLTAVDNCLMVIDAAKGVET-RTRKLMEVTRLRDT 133 (527)
T ss_pred EEEEeeC-CeEEEEEECCChhh----------------HHHHHHHHHHhCCEEEEEEECCCCCCH-HHHHHHHHHHhcCC
Confidence 3344443 35789999999832 112345667778888776644332222 22333333334567
Q ss_pred eEEEEecCCCcc
Q 004351 203 RTIIVSTKLDTK 214 (759)
Q Consensus 203 RTIgVlTK~D~~ 214 (759)
..|.|+||.|+.
T Consensus 134 PiivviNKiD~~ 145 (527)
T TIGR00503 134 PIFTFMNKLDRD 145 (527)
T ss_pred CEEEEEECcccc
Confidence 899999999984
No 232
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=97.30 E-value=0.00061 Score=69.74 Aligned_cols=66 Identities=15% Similarity=0.214 Sum_probs=43.4
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCC--cCc-HHHHHHHHHhCcCCCeEEEEe
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSD--WSN-ATTRRVVMQIDPELKRTIIVS 208 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D--~~~-~~~l~lar~~Dp~g~RTIgVl 208 (759)
..|.|.|+||-.. ...|...|.++.+.+|+|+...+. +.+ ..++..+++..+ +...|.|.
T Consensus 44 ~~l~iwDt~G~e~----------------~~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~-~~piilvg 106 (200)
T smart00176 44 IRFNVWDTAGQEK----------------FGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCE-NIPIVLCG 106 (200)
T ss_pred EEEEEEECCCchh----------------hhhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCC-CCCEEEEE
Confidence 3578899999732 336677899999988877632221 111 134444555543 67899999
Q ss_pred cCCCcc
Q 004351 209 TKLDTK 214 (759)
Q Consensus 209 TK~D~~ 214 (759)
||.|+.
T Consensus 107 NK~Dl~ 112 (200)
T smart00176 107 NKVDVK 112 (200)
T ss_pred ECcccc
Confidence 999984
No 233
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=97.28 E-value=0.00091 Score=75.90 Aligned_cols=22 Identities=45% Similarity=0.733 Sum_probs=20.4
Q ss_pred EEEEEeccCCchHHHHHHHhCC
Q 004351 26 AVLVVGHQTDGKSALVEALMGF 47 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~ 47 (759)
.|+|+|+-++|||||+++|+|.
T Consensus 11 ni~v~Gh~d~GKSTL~~~L~~~ 32 (411)
T PRK04000 11 NIGMVGHVDHGKTTLVQALTGV 32 (411)
T ss_pred EEEEEccCCCCHHHHHHHhhCe
Confidence 5899999999999999999774
No 234
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=97.28 E-value=0.001 Score=73.97 Aligned_cols=38 Identities=26% Similarity=0.121 Sum_probs=29.4
Q ss_pred CEEEEEeccCCchHHHHHHHhCCccceecCccccccce
Q 004351 25 PAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPI 62 (759)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~~fp~~g~g~cTR~P~ 62 (759)
.+|.+||-.++|||||+|+|+|.+.....--.||+-|.
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~ 40 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPN 40 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccce
Confidence 58999999999999999999998843222245666654
No 235
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=97.25 E-value=0.0017 Score=71.44 Aligned_cols=82 Identities=17% Similarity=0.145 Sum_probs=54.9
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCc--------------cceeEeecccCCcCcHHHHHHHHHh
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHR--------------EFIILCLEDCSDWSNATTRRVVMQI 197 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~--------------~~IIL~V~~~~D~~~~~~l~lar~~ 197 (759)
.+||+|||||++..-..... -+..+.-+++.-..|+.+. |+.+.++.+..+--..-.+++.+++
T Consensus 82 ~~l~vIDtpGfGD~idNs~~--we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~l 159 (373)
T COG5019 82 LNLTVIDTPGFGDFIDNSKC--WEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRL 159 (373)
T ss_pred EEEEEeccCCcccccccccc--HHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHH
Confidence 47999999999876543222 2345677778888887521 2333444555555555567777777
Q ss_pred CcCCCeEEEEecCCCcccc
Q 004351 198 DPELKRTIIVSTKLDTKIP 216 (759)
Q Consensus 198 Dp~g~RTIgVlTK~D~~~~ 216 (759)
.. --..|-|+.|.|.+.+
T Consensus 160 s~-~vNlIPVI~KaD~lT~ 177 (373)
T COG5019 160 SK-RVNLIPVIAKADTLTD 177 (373)
T ss_pred hc-ccCeeeeeeccccCCH
Confidence 64 3579999999999864
No 236
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=97.20 E-value=0.002 Score=79.34 Aligned_cols=66 Identities=18% Similarity=0.250 Sum_probs=42.0
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHHHHHhCcCCCeEEEEecCCC
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKLD 212 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~RTIgVlTK~D 212 (759)
.++||||||... -+.++ ..-++-.+..||+|.+...+ ......+.+.+...+...|.++||+|
T Consensus 99 ~inliDtPGh~d---------------F~~e~-~~al~~~D~ailVvda~~Gv-~~~t~~~~~~~~~~~~p~i~~iNK~D 161 (843)
T PLN00116 99 LINLIDSPGHVD---------------FSSEV-TAALRITDGALVVVDCIEGV-CVQTETVLRQALGERIRPVLTVNKMD 161 (843)
T ss_pred EEEEECCCCHHH---------------HHHHH-HHHHhhcCEEEEEEECCCCC-cccHHHHHHHHHHCCCCEEEEEECCc
Confidence 468999999832 12232 23345566666666433322 33345566666667888999999999
Q ss_pred ccc
Q 004351 213 TKI 215 (759)
Q Consensus 213 ~~~ 215 (759)
+..
T Consensus 162 ~~~ 164 (843)
T PLN00116 162 RCF 164 (843)
T ss_pred ccc
Confidence 974
No 237
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=97.17 E-value=0.0032 Score=64.68 Aligned_cols=25 Identities=44% Similarity=0.454 Sum_probs=23.5
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.||++|+.++|||||+..+++-.|+
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~f~ 26 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQVL 26 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC
Confidence 5899999999999999999998886
No 238
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=97.16 E-value=0.0013 Score=65.88 Aligned_cols=66 Identities=21% Similarity=0.260 Sum_probs=45.1
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeeccc--CCcCc--HHHHHHHHHhCcCCCeEEEE
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDC--SDWSN--ATTRRVVMQIDPELKRTIIV 207 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~--~D~~~--~~~l~lar~~Dp~g~RTIgV 207 (759)
.+|.|.||+|-.. .+.|...|+++.+.+|||.... .-+.+ ..++..++...+ ....|.|
T Consensus 49 v~l~i~Dt~G~~~----------------~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~-~~piilv 111 (176)
T cd04133 49 VNLGLWDTAGQED----------------YNRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAP-NVPIVLV 111 (176)
T ss_pred EEEEEEECCCCcc----------------ccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCC-CCCEEEE
Confidence 4688999999733 2245566899999898887422 22323 235555666554 5789999
Q ss_pred ecCCCcc
Q 004351 208 STKLDTK 214 (759)
Q Consensus 208 lTK~D~~ 214 (759)
.||.|+.
T Consensus 112 gnK~Dl~ 118 (176)
T cd04133 112 GTKLDLR 118 (176)
T ss_pred EeChhhc
Confidence 9999985
No 239
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=97.10 E-value=0.0014 Score=65.60 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=22.2
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.|+|+|+.++|||||++.|.+-.|+
T Consensus 3 Ki~ivG~~g~GKStLl~~l~~~~~~ 27 (187)
T cd04129 3 KLVIVGDGACGKTSLLSVFTLGEFP 27 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC
Confidence 5899999999999999999866665
No 240
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=97.09 E-value=0.0019 Score=74.33 Aligned_cols=23 Identities=39% Similarity=0.664 Sum_probs=21.3
Q ss_pred EEEEEeccCCchHHHHHHHhCCc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQ 48 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~ 48 (759)
.|.++|+--.|||||+.||+|+.
T Consensus 36 ~ig~~GHVDhGKTtLv~aLtg~~ 58 (460)
T PTZ00327 36 NIGTIGHVAHGKSTVVKALSGVK 58 (460)
T ss_pred EEEEEccCCCCHHHHHHHHhCCC
Confidence 48899999999999999999875
No 241
>PRK07560 elongation factor EF-2; Reviewed
Probab=97.08 E-value=0.003 Score=76.78 Aligned_cols=66 Identities=21% Similarity=0.230 Sum_probs=40.6
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHHHHHhCcCCCeEEEEecCC
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKL 211 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~RTIgVlTK~ 211 (759)
..++||||||...- ...+...+...+..|++|.+... .......+.+.+...+...|.|+||.
T Consensus 87 ~~i~liDtPG~~df----------------~~~~~~~l~~~D~avlVvda~~g-~~~~t~~~~~~~~~~~~~~iv~iNK~ 149 (731)
T PRK07560 87 YLINLIDTPGHVDF----------------GGDVTRAMRAVDGAIVVVDAVEG-VMPQTETVLRQALRERVKPVLFINKV 149 (731)
T ss_pred EEEEEEcCCCccCh----------------HHHHHHHHHhcCEEEEEEECCCC-CCccHHHHHHHHHHcCCCeEEEEECc
Confidence 45899999999541 02334455566777765543322 23334444444444466789999999
Q ss_pred Ccc
Q 004351 212 DTK 214 (759)
Q Consensus 212 D~~ 214 (759)
|+.
T Consensus 150 D~~ 152 (731)
T PRK07560 150 DRL 152 (731)
T ss_pred hhh
Confidence 986
No 242
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=97.07 E-value=0.0013 Score=75.52 Aligned_cols=80 Identities=19% Similarity=0.218 Sum_probs=44.5
Q ss_pred cccceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcC------cHHH
Q 004351 117 FSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWS------NATT 190 (759)
Q Consensus 117 fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~------~~~~ 190 (759)
.+-+.-...+++. ...++|||+||.. +.+.+|+.. +...+..||+|.+...+- ..+.
T Consensus 71 iTid~~~~~~~~~-~~~i~lIDtPGh~---------------~f~~~~~~g-~~~aD~ailVVda~~G~~e~~~~~~~qT 133 (446)
T PTZ00141 71 ITIDIALWKFETP-KYYFTIIDAPGHR---------------DFIKNMITG-TSQADVAILVVASTAGEFEAGISKDGQT 133 (446)
T ss_pred EeEEeeeEEEccC-CeEEEEEECCChH---------------HHHHHHHHh-hhhcCEEEEEEEcCCCceecccCCCccH
Confidence 4333333344332 3578999999952 234455544 567777777665432220 1233
Q ss_pred HHHHHHhCcCCC-eEEEEecCCCc
Q 004351 191 RRVVMQIDPELK-RTIIVSTKLDT 213 (759)
Q Consensus 191 l~lar~~Dp~g~-RTIgVlTK~D~ 213 (759)
.+.++.++-.|. +.|.|+||+|.
T Consensus 134 ~eh~~~~~~~gi~~iiv~vNKmD~ 157 (446)
T PTZ00141 134 REHALLAFTLGVKQMIVCINKMDD 157 (446)
T ss_pred HHHHHHHHHcCCCeEEEEEEcccc
Confidence 333333444464 46799999995
No 243
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.01 E-value=0.0093 Score=67.86 Aligned_cols=71 Identities=14% Similarity=0.194 Sum_probs=42.6
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHHHHHhCcCCCeEEEEecCC
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKL 211 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~RTIgVlTK~ 211 (759)
.++.||||||..... +....+...+. + ..+|+.++|++.+.. -+.+...++.+.....-+-.|+||.
T Consensus 183 ~DvViIDTaGr~~~d--------~~lm~El~~i~-~-~~~p~e~lLVlda~~---Gq~a~~~a~~F~~~~~~~g~IlTKl 249 (429)
T TIGR01425 183 FDIIIVDTSGRHKQE--------DSLFEEMLQVA-E-AIQPDNIIFVMDGSI---GQAAEAQAKAFKDSVDVGSVIITKL 249 (429)
T ss_pred CCEEEEECCCCCcch--------HHHHHHHHHHh-h-hcCCcEEEEEecccc---ChhHHHHHHHHHhccCCcEEEEECc
Confidence 478999999975421 12233333333 1 235666666665432 2445666666654445688999999
Q ss_pred Cccc
Q 004351 212 DTKI 215 (759)
Q Consensus 212 D~~~ 215 (759)
|-..
T Consensus 250 D~~a 253 (429)
T TIGR01425 250 DGHA 253 (429)
T ss_pred cCCC
Confidence 9853
No 244
>PRK13768 GTPase; Provisional
Probab=97.00 E-value=0.0033 Score=66.69 Aligned_cols=76 Identities=16% Similarity=0.090 Sum_probs=42.5
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHHHHHhC-----cCCCeEEE
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQID-----PELKRTII 206 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~~D-----p~g~RTIg 206 (759)
.+..|||+||......- ......+++.+......++++|+|+....+.........+. ..+...|.
T Consensus 97 ~~~~~~d~~g~~~~~~~---------~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~ 167 (253)
T PRK13768 97 ADYVLVDTPGQMELFAF---------RESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIP 167 (253)
T ss_pred CCEEEEeCCcHHHHHhh---------hHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 47899999998654211 12233344333322255666677664334333332222111 24678999
Q ss_pred EecCCCcccc
Q 004351 207 VSTKLDTKIP 216 (759)
Q Consensus 207 VlTK~D~~~~ 216 (759)
|+||.|+...
T Consensus 168 v~nK~D~~~~ 177 (253)
T PRK13768 168 VLNKADLLSE 177 (253)
T ss_pred EEEhHhhcCc
Confidence 9999999643
No 245
>PTZ00416 elongation factor 2; Provisional
Probab=96.96 E-value=0.0038 Score=76.88 Aligned_cols=65 Identities=20% Similarity=0.267 Sum_probs=42.1
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHHHHHhCcCCCeEEEEecCCC
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKLD 212 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~RTIgVlTK~D 212 (759)
.++||||||...- +.+ +..-+...+..|++|.+...+ ......+.+.+...+...|.|+||+|
T Consensus 93 ~i~liDtPG~~~f---------------~~~-~~~al~~~D~ailVvda~~g~-~~~t~~~~~~~~~~~~p~iv~iNK~D 155 (836)
T PTZ00416 93 LINLIDSPGHVDF---------------SSE-VTAALRVTDGALVVVDCVEGV-CVQTETVLRQALQERIRPVLFINKVD 155 (836)
T ss_pred EEEEEcCCCHHhH---------------HHH-HHHHHhcCCeEEEEEECCCCc-CccHHHHHHHHHHcCCCEEEEEEChh
Confidence 4899999999431 112 233355667776655433333 33345666666666788999999999
Q ss_pred cc
Q 004351 213 TK 214 (759)
Q Consensus 213 ~~ 214 (759)
+.
T Consensus 156 ~~ 157 (836)
T PTZ00416 156 RA 157 (836)
T ss_pred hh
Confidence 96
No 246
>PLN00043 elongation factor 1-alpha; Provisional
Probab=96.87 E-value=0.002 Score=73.93 Aligned_cols=67 Identities=16% Similarity=0.282 Sum_probs=40.3
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCC-cC-----cHHHHHHHHHhCcCCC-eE
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSD-WS-----NATTRRVVMQIDPELK-RT 204 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D-~~-----~~~~l~lar~~Dp~g~-RT 204 (759)
..++|||+||-. +-+.+|+ .++...+..||+|.+... +. ..+..+.+..++..|. +.
T Consensus 85 ~~i~liDtPGh~---------------df~~~~~-~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~i 148 (447)
T PLN00043 85 YYCTVIDAPGHR---------------DFIKNMI-TGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQM 148 (447)
T ss_pred EEEEEEECCCHH---------------HHHHHHH-hhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcE
Confidence 479999999961 2334444 456788888887754322 11 0123333333334455 46
Q ss_pred EEEecCCCcc
Q 004351 205 IIVSTKLDTK 214 (759)
Q Consensus 205 IgVlTK~D~~ 214 (759)
|.|+||+|+.
T Consensus 149 IV~vNKmD~~ 158 (447)
T PLN00043 149 ICCCNKMDAT 158 (447)
T ss_pred EEEEEcccCC
Confidence 8889999975
No 247
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=96.81 E-value=0.0041 Score=67.21 Aligned_cols=25 Identities=36% Similarity=0.433 Sum_probs=22.3
Q ss_pred CCEEEEEeccCCchHHHHHHHhCCc
Q 004351 24 APAVLVVGHQTDGKSALVEALMGFQ 48 (759)
Q Consensus 24 lPqIVVVG~QSsGKSSLLEAL~G~~ 48 (759)
++.|-.||=.+|||||||+||+..+
T Consensus 196 iadvGLVG~PNAGKSTLL~als~AK 220 (366)
T KOG1489|consen 196 IADVGLVGFPNAGKSTLLNALSRAK 220 (366)
T ss_pred ecccceecCCCCcHHHHHHHhhccC
Confidence 4667889999999999999999876
No 248
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=96.79 E-value=0.0048 Score=61.48 Aligned_cols=79 Identities=20% Similarity=0.241 Sum_probs=45.8
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcC-cHHHHHHHHH-h---CcCCCeEEE
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWS-NATTRRVVMQ-I---DPELKRTII 206 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~-~~~~l~lar~-~---Dp~g~RTIg 206 (759)
..+++.|++|=.. .+.+-+.|.++.+.||++| |++|.. -.++...... + .-.+.+.+.
T Consensus 58 ~~~~~~d~gG~~~----------------~~~~w~~y~~~~~~iIfVv-Dssd~~~l~e~~~~L~~ll~~~~~~~~piLI 120 (175)
T PF00025_consen 58 YSLTIWDLGGQES----------------FRPLWKSYFQNADGIIFVV-DSSDPERLQEAKEELKELLNDPELKDIPILI 120 (175)
T ss_dssp EEEEEEEESSSGG----------------GGGGGGGGHTTESEEEEEE-ETTGGGGHHHHHHHHHHHHTSGGGTTSEEEE
T ss_pred EEEEEEecccccc----------------ccccceeeccccceeEEEE-ecccceeecccccchhhhcchhhcccceEEE
Confidence 4688899998532 1245566888877776655 444332 2333332222 1 224678999
Q ss_pred EecCCCcccccccChhhHHHhhC
Q 004351 207 VSTKLDTKIPQFARASDVEVFLS 229 (759)
Q Consensus 207 VlTK~D~~~~~~~~~~~~~~~L~ 229 (759)
++||.|+.. .-...+...+|.
T Consensus 121 l~NK~D~~~--~~~~~~i~~~l~ 141 (175)
T PF00025_consen 121 LANKQDLPD--AMSEEEIKEYLG 141 (175)
T ss_dssp EEESTTSTT--SSTHHHHHHHTT
T ss_pred EeccccccC--cchhhHHHhhhh
Confidence 999999742 223455555554
No 249
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=96.75 E-value=0.006 Score=63.55 Aligned_cols=26 Identities=35% Similarity=0.451 Sum_probs=21.9
Q ss_pred CCCCE-EEEEeccCCchHHHHHHHhCC
Q 004351 22 FDAPA-VLVVGHQTDGKSALVEALMGF 47 (759)
Q Consensus 22 i~lPq-IVVVG~QSsGKSSLLEAL~G~ 47 (759)
...|. |+|+|..++|||||+++|.+.
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~ 62 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKN 62 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34454 899999999999999999874
No 250
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=96.67 E-value=0.0072 Score=67.95 Aligned_cols=165 Identities=16% Similarity=0.177 Sum_probs=84.8
Q ss_pred HHHHHhhhhcCCCCCCCEEEEEeccCCchHHHHHHHhCCccceecCccccccceEEEEeeCCCCCCCceEEecCCCCCCc
Q 004351 9 NELHGLAQELETPFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCHLASSDVDPTL 88 (759)
Q Consensus 9 n~L~~l~~~~~~~i~lPqIVVVG~QSsGKSSLLEAL~G~~fp~~g~g~cTR~P~~l~l~~~~~~~~~~~~i~~~d~~~~~ 88 (759)
|=.++++...|..+ .|.|||...+||||++++++|.=+.|.=.+.-
T Consensus 5 ~iykDIa~RT~G~I---yIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~------------------------------- 50 (492)
T TIGR02836 5 DIYKDIAERTQGDI---YIGVVGPVRTGKSTFIKKFMELLVLPNISNEY------------------------------- 50 (492)
T ss_pred hHHHHHHHHhCCcE---EEEEEcCCCCChHHHHHHHHhhhccccccchh-------------------------------
Confidence 33444544444444 58999999999999999999986543200000
Q ss_pred ccccChHHHHHHHHHHHhhhhhc---cCCCcc-ccceEEEEEEecCCCCcEEEeCCCCcCCC-CCCCchhhH--------
Q 004351 89 AQEKSLQEIQSFIEAENMRLERE---SNSNQF-SAKEIIIKVEFKYCPNLTIIDTPGLIAPA-PGRKNRALQ-------- 155 (759)
Q Consensus 89 ~~~~~~~~l~~~Ie~~~~~l~~~---~~~~~f-S~d~I~leI~~p~~p~LtLVDLPGl~~~~-~~~q~~~~e-------- 155 (759)
.+....|+|+.. .+|. +....| -.+.+.|.+..----+..|||++|+.-.. .|.....-.
T Consensus 51 ~k~Ra~DELpqs-------~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~ 123 (492)
T TIGR02836 51 DKERAQDELPQS-------AAGKTIMTTEPKFVPNEAVEININEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWY 123 (492)
T ss_pred HHhHHHhccCcC-------CCCCCcccCCCccccCcceEEeccCCCcccEEEEECCCcccCCCccceeccccccccCCcc
Confidence 000001111100 0010 000122 22333333322122478999999997643 232211000
Q ss_pred ----HHHHHHHHHHHHHhcCccceeEeec-ccC--CcC----cHHHHHHHHHhCcCCCeEEEEecCCCcc
Q 004351 156 ----DQARAVESLVRAKMQHREFIILCLE-DCS--DWS----NATTRRVVMQIDPELKRTIIVSTKLDTK 214 (759)
Q Consensus 156 ----~~~~~v~~lv~~Yi~~~~~IIL~V~-~~~--D~~----~~~~l~lar~~Dp~g~RTIgVlTK~D~~ 214 (759)
..-...+-=.++-|...-+|.|+|. +++ |+. .....+.+.++...+...|.|+||.|-.
T Consensus 124 d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eLk~~~kPfiivlN~~dp~ 193 (492)
T TIGR02836 124 DYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEELKELNKPFIILLNSTHPY 193 (492)
T ss_pred cccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHHHhcCCCEEEEEECcCCC
Confidence 0000011113444554566777765 652 333 2234677788888899999999999954
No 251
>PLN00023 GTP-binding protein; Provisional
Probab=96.65 E-value=0.0071 Score=66.43 Aligned_cols=30 Identities=37% Similarity=0.380 Sum_probs=26.4
Q ss_pred CCCCCEEEEEeccCCchHHHHHHHhCCccc
Q 004351 21 PFDAPAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 21 ~i~lPqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
....-.|||||+.++||||||..|++-.|.
T Consensus 18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~ 47 (334)
T PLN00023 18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSSI 47 (334)
T ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCcc
Confidence 455568999999999999999999998875
No 252
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.64 E-value=0.011 Score=65.23 Aligned_cols=23 Identities=30% Similarity=0.290 Sum_probs=20.3
Q ss_pred CEEEEEeccCCchHHHHHHHhCC
Q 004351 25 PAVLVVGHQTDGKSALVEALMGF 47 (759)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~ 47 (759)
..|.|.|.+|+|||||+++|...
T Consensus 57 ~~igi~G~~GaGKSTl~~~l~~~ 79 (332)
T PRK09435 57 LRIGITGVPGVGKSTFIEALGMH 79 (332)
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998654
No 253
>PRK12740 elongation factor G; Reviewed
Probab=96.55 E-value=0.012 Score=70.94 Aligned_cols=67 Identities=19% Similarity=0.213 Sum_probs=44.6
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHHHHHhCcCCCeEEEEecCC
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKL 211 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~RTIgVlTK~ 211 (759)
..++||||||... ....+..++...+.+|++|.+..+ .......+.+.+...+.+.|.|+||.
T Consensus 60 ~~i~liDtPG~~~----------------~~~~~~~~l~~aD~vllvvd~~~~-~~~~~~~~~~~~~~~~~p~iiv~NK~ 122 (668)
T PRK12740 60 HKINLIDTPGHVD----------------FTGEVERALRVLDGAVVVVCAVGG-VEPQTETVWRQAEKYGVPRIIFVNKM 122 (668)
T ss_pred EEEEEEECCCcHH----------------HHHHHHHHHHHhCeEEEEEeCCCC-cCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 5799999999842 113345667777777766644332 23444455555555678899999999
Q ss_pred Cccc
Q 004351 212 DTKI 215 (759)
Q Consensus 212 D~~~ 215 (759)
|+..
T Consensus 123 D~~~ 126 (668)
T PRK12740 123 DRAG 126 (668)
T ss_pred CCCC
Confidence 9863
No 254
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=96.54 E-value=0.0055 Score=69.56 Aligned_cols=79 Identities=27% Similarity=0.422 Sum_probs=54.5
Q ss_pred CCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccC---CcCcHHHHHHHHHhCcCC--CeEE
Q 004351 131 CPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCS---DWSNATTRRVVMQIDPEL--KRTI 205 (759)
Q Consensus 131 ~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~---D~~~~~~l~lar~~Dp~g--~RTI 205 (759)
+.-+.+||||||-..+. ++...|+-..-.-|.+=++-+|.+.+-+ ..+-.+=+++-..+.|.. .-+|
T Consensus 214 YlrwQViDTPGILD~pl--------EdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~I 285 (620)
T KOG1490|consen 214 YLRWQVIDTPGILDRPE--------EDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTI 285 (620)
T ss_pred eeeeeecCCccccCcch--------hhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceE
Confidence 34577899999988663 2334455555566777777788876532 344444467777887754 5699
Q ss_pred EEecCCCccccc
Q 004351 206 IVSTKLDTKIPQ 217 (759)
Q Consensus 206 gVlTK~D~~~~~ 217 (759)
.|++|+|.+.++
T Consensus 286 lvlNK~D~m~~e 297 (620)
T KOG1490|consen 286 LVLNKIDAMRPE 297 (620)
T ss_pred EEeecccccCcc
Confidence 999999998664
No 255
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=96.52 E-value=0.0044 Score=62.61 Aligned_cols=27 Identities=37% Similarity=0.507 Sum_probs=20.9
Q ss_pred CCEEEEEeccCCchHHHHHHHhCCccc
Q 004351 24 APAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 24 lPqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
-|.|+++|..+|||++|+..|..-.++
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~ 29 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTV 29 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS--
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcC
Confidence 488999999999999999999987654
No 256
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.46 E-value=0.006 Score=67.01 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=20.6
Q ss_pred EEEEEeccCCchHHHHHHHhCCc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQ 48 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~ 48 (759)
-|+++|.+|+||||++-.|.+.-
T Consensus 116 vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 116 VILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 47899999999999999999864
No 257
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=96.36 E-value=0.0066 Score=65.87 Aligned_cols=26 Identities=31% Similarity=0.428 Sum_probs=23.2
Q ss_pred CEEEEEeccCCchHHHHHHHhCCccc
Q 004351 25 PAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
-|+++||-.|+||||||++|+|..--
T Consensus 64 a~v~lVGfPsvGKStLL~~LTnt~se 89 (365)
T COG1163 64 ATVALVGFPSVGKSTLLNKLTNTKSE 89 (365)
T ss_pred eEEEEEcCCCccHHHHHHHHhCCCcc
Confidence 37999999999999999999997743
No 258
>PRK14974 cell division protein FtsY; Provisional
Probab=96.31 E-value=0.013 Score=64.93 Aligned_cols=71 Identities=14% Similarity=0.276 Sum_probs=43.5
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHHHHHhCcCCCeEEEEecCC
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKL 211 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~RTIgVlTK~ 211 (759)
.++.||||||..... .......+.+++ ..+|+.++|++.+.. -+.+.+.++.+...-.=+-.|+||.
T Consensus 223 ~DvVLIDTaGr~~~~--------~~lm~eL~~i~~--~~~pd~~iLVl~a~~---g~d~~~~a~~f~~~~~~~giIlTKl 289 (336)
T PRK14974 223 IDVVLIDTAGRMHTD--------ANLMDELKKIVR--VTKPDLVIFVGDALA---GNDAVEQAREFNEAVGIDGVILTKV 289 (336)
T ss_pred CCEEEEECCCccCCc--------HHHHHHHHHHHH--hhCCceEEEeecccc---chhHHHHHHHHHhcCCCCEEEEeee
Confidence 469999999997642 122344444432 235676666554422 3456666666654333478899999
Q ss_pred Cccc
Q 004351 212 DTKI 215 (759)
Q Consensus 212 D~~~ 215 (759)
|...
T Consensus 290 D~~~ 293 (336)
T PRK14974 290 DADA 293 (336)
T ss_pred cCCC
Confidence 9853
No 259
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.26 E-value=0.0066 Score=68.17 Aligned_cols=71 Identities=18% Similarity=0.208 Sum_probs=43.8
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHHHHHhCcCCCeEEEEecCC
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKL 211 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~RTIgVlTK~ 211 (759)
.++.||||||-.... ...+..+..++.. ..|+.++|++.++. ...+...+++.+..- .=+=.|+||.
T Consensus 321 ~DvVLIDTaGRs~kd--------~~lm~EL~~~lk~--~~PdevlLVLsATt--k~~d~~~i~~~F~~~-~idglI~TKL 387 (436)
T PRK11889 321 VDYILIDTAGKNYRA--------SETVEEMIETMGQ--VEPDYICLTLSASM--KSKDMIEIITNFKDI-HIDGIVFTKF 387 (436)
T ss_pred CCEEEEeCccccCcC--------HHHHHHHHHHHhh--cCCCeEEEEECCcc--ChHHHHHHHHHhcCC-CCCEEEEEcc
Confidence 478899999996532 1223444444432 24666677665432 234557788888763 3466789999
Q ss_pred Cccc
Q 004351 212 DTKI 215 (759)
Q Consensus 212 D~~~ 215 (759)
|-..
T Consensus 388 DET~ 391 (436)
T PRK11889 388 DETA 391 (436)
T ss_pred cCCC
Confidence 9864
No 260
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=96.26 E-value=0.038 Score=56.54 Aligned_cols=31 Identities=19% Similarity=0.309 Sum_probs=23.4
Q ss_pred CCCCCCEEEEEeccCCchHHHHHHHhCCccc
Q 004351 20 TPFDAPAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 20 ~~i~lPqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.....-.|+++|+.++|||||++.++.-.|+
T Consensus 5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~ 35 (215)
T PTZ00132 5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFE 35 (215)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHhCCCC
Confidence 3445568999999999999999755444454
No 261
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=96.21 E-value=0.0092 Score=58.18 Aligned_cols=28 Identities=25% Similarity=0.350 Sum_probs=24.1
Q ss_pred EEEEEeccCCchHHHHHHHhCCccceec
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFNHVG 53 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp~~g 53 (759)
.|+++|.+++|||||+|+|.|....+++
T Consensus 104 ~v~~~G~~nvGKStliN~l~~~~~~~~~ 131 (157)
T cd01858 104 SVGFIGYPNVGKSSIINTLRSKKVCKVA 131 (157)
T ss_pred EEEEEeCCCCChHHHHHHHhcCCceeeC
Confidence 5789999999999999999998765443
No 262
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.21 E-value=0.025 Score=60.82 Aligned_cols=71 Identities=18% Similarity=0.204 Sum_probs=43.3
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHHHHHhCcCCCeEEEEecCC
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKL 211 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~RTIgVlTK~ 211 (759)
.++.|||+||-.... ....+...+++. ...++.++|++.++. ..+++.+.++.+.+- .=+=.|+||.
T Consensus 155 ~D~ViIDt~Gr~~~~--------~~~l~el~~~~~--~~~~~~~~LVl~a~~--~~~d~~~~~~~f~~~-~~~~~I~TKl 221 (270)
T PRK06731 155 VDYILIDTAGKNYRA--------SETVEEMIETMG--QVEPDYICLTLSASM--KSKDMIEIITNFKDI-HIDGIVFTKF 221 (270)
T ss_pred CCEEEEECCCCCcCC--------HHHHHHHHHHHh--hhCCCeEEEEEcCcc--CHHHHHHHHHHhCCC-CCCEEEEEee
Confidence 478899999996532 122333333332 224555666665542 234567788888764 3455689999
Q ss_pred Cccc
Q 004351 212 DTKI 215 (759)
Q Consensus 212 D~~~ 215 (759)
|-..
T Consensus 222 Det~ 225 (270)
T PRK06731 222 DETA 225 (270)
T ss_pred cCCC
Confidence 9864
No 263
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.19 E-value=0.087 Score=56.69 Aligned_cols=73 Identities=16% Similarity=0.226 Sum_probs=39.9
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHH---HHHhc-CccceeEeecccCCcCcHHHHHHHHHhCcCCCeEEEE
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLV---RAKMQ-HREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIV 207 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv---~~Yi~-~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~RTIgV 207 (759)
.++.||||||..... ....++++.+. ...+. .++.++|++.+. ..+.++..++.+.....-+-.|
T Consensus 155 ~D~ViIDT~G~~~~d--------~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~---~~~~~~~~~~~f~~~~~~~g~I 223 (272)
T TIGR00064 155 IDVVLIDTAGRLQNK--------VNLMDELKKIKRVIKKVDKDAPDEVLLVLDAT---TGQNALEQAKVFNEAVGLTGII 223 (272)
T ss_pred CCEEEEeCCCCCcch--------HHHHHHHHHHHHHHhcccCCCCceEEEEEECC---CCHHHHHHHHHHHhhCCCCEEE
Confidence 578999999996631 12233333333 22222 255566655443 2333444444443222347889
Q ss_pred ecCCCccc
Q 004351 208 STKLDTKI 215 (759)
Q Consensus 208 lTK~D~~~ 215 (759)
+||.|-..
T Consensus 224 lTKlDe~~ 231 (272)
T TIGR00064 224 LTKLDGTA 231 (272)
T ss_pred EEccCCCC
Confidence 99999853
No 264
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=96.19 E-value=0.0074 Score=67.36 Aligned_cols=24 Identities=38% Similarity=0.501 Sum_probs=22.1
Q ss_pred CEEEEEeccCCchHHHHHHHhCCc
Q 004351 25 PAVLVVGHQTDGKSALVEALMGFQ 48 (759)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~~ 48 (759)
-.+++||.+++|||||+|+|++..
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~ 178 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQN 178 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhc
Confidence 489999999999999999999864
No 265
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=96.11 E-value=0.02 Score=58.30 Aligned_cols=64 Identities=23% Similarity=0.259 Sum_probs=40.1
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccC--CcCcH--HHHHHHHHhCcCCCeEEEE
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCS--DWSNA--TTRRVVMQIDPELKRTIIV 207 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~--D~~~~--~~l~lar~~Dp~g~RTIgV 207 (759)
..|.|.||+|... .+...|+++.+.+||+..-.+ -+.+. .+...++...+ ....|.|
T Consensus 66 v~l~iwDTaG~~~------------------~~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~-~~piilv 126 (195)
T cd01873 66 VSLRLWDTFGDHD------------------KDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCP-RVPVILV 126 (195)
T ss_pred EEEEEEeCCCChh------------------hhhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCC-CCCEEEE
Confidence 3578899999732 112347888888887764221 12222 24455555444 4678999
Q ss_pred ecCCCcc
Q 004351 208 STKLDTK 214 (759)
Q Consensus 208 lTK~D~~ 214 (759)
.||.|+.
T Consensus 127 gNK~DL~ 133 (195)
T cd01873 127 GCKLDLR 133 (195)
T ss_pred EEchhcc
Confidence 9999985
No 266
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.11 E-value=0.033 Score=56.58 Aligned_cols=58 Identities=12% Similarity=0.150 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhcCccceeEeec--ccCCc-CcHHHHHHHHHh-CcCCCeEEEEecCCCcccc
Q 004351 159 RAVESLVRAKMQHREFIILCLE--DCSDW-SNATTRRVVMQI-DPELKRTIIVSTKLDTKIP 216 (759)
Q Consensus 159 ~~v~~lv~~Yi~~~~~IIL~V~--~~~D~-~~~~~l~lar~~-Dp~g~RTIgVlTK~D~~~~ 216 (759)
+..+.|+-.|+++...+|++.- +-+-+ .+..|++-++.- ++++-..+.|-||.|++.+
T Consensus 82 ERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dk 143 (221)
T KOG0094|consen 82 ERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDK 143 (221)
T ss_pred HHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccch
Confidence 4678999999999887776642 22222 234566655444 4445678889999999743
No 267
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=96.09 E-value=0.03 Score=58.54 Aligned_cols=25 Identities=32% Similarity=0.539 Sum_probs=22.6
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.|.|||..+.|||||+|.|..-.+-
T Consensus 48 NIMVVgqSglgkstlinTlf~s~v~ 72 (336)
T KOG1547|consen 48 NIMVVGQSGLGKSTLINTLFKSHVS 72 (336)
T ss_pred EEEEEecCCCCchhhHHHHHHHHHh
Confidence 5899999999999999999887765
No 268
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.09 E-value=0.011 Score=67.57 Aligned_cols=70 Identities=17% Similarity=0.259 Sum_probs=44.2
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHHHHHhCcCCCeEEEEecCCC
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKLD 212 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~RTIgVlTK~D 212 (759)
++.||||||..... +...+++..+.. .+ .++.++|++.+.. .+++.+.++.+...-.-+-.|+||.|
T Consensus 177 DvVIIDTAGr~~~d--------~~lm~El~~l~~-~~-~pdevlLVvda~~---gq~av~~a~~F~~~l~i~gvIlTKlD 243 (437)
T PRK00771 177 DVIIVDTAGRHALE--------EDLIEEMKEIKE-AV-KPDEVLLVIDATI---GQQAKNQAKAFHEAVGIGGIIITKLD 243 (437)
T ss_pred CEEEEECCCcccch--------HHHHHHHHHHHH-Hh-cccceeEEEeccc---cHHHHHHHHHHHhcCCCCEEEEeccc
Confidence 78999999986532 122333333322 22 4666666655433 25677788887765556778999999
Q ss_pred ccc
Q 004351 213 TKI 215 (759)
Q Consensus 213 ~~~ 215 (759)
-..
T Consensus 244 ~~a 246 (437)
T PRK00771 244 GTA 246 (437)
T ss_pred CCC
Confidence 853
No 269
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=96.04 E-value=0.0047 Score=64.41 Aligned_cols=28 Identities=39% Similarity=0.579 Sum_probs=24.8
Q ss_pred CCCEEEEEeccCCchHHHHHHHhCC--ccc
Q 004351 23 DAPAVLVVGHQTDGKSALVEALMGF--QFN 50 (759)
Q Consensus 23 ~lPqIVVVG~QSsGKSSLLEAL~G~--~fp 50 (759)
++=.|.|+|.+++|||+|||.|+|. .|.
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~ 35 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFD 35 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCCeE
Confidence 3446899999999999999999999 787
No 270
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.01 E-value=0.037 Score=62.10 Aligned_cols=70 Identities=14% Similarity=0.183 Sum_probs=38.7
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHHHHHhCcCCCeEEEEecCC
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKL 211 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~RTIgVlTK~ 211 (759)
-++.||||||..... ......+..+.. .+ +++-++|++.++. ..++...+++.+..-+ -+-.|+||.
T Consensus 286 ~D~VLIDTAGr~~~d--------~~~l~EL~~l~~-~~-~p~~~~LVLsag~--~~~d~~~i~~~f~~l~-i~glI~TKL 352 (407)
T PRK12726 286 VDHILIDTVGRNYLA--------EESVSEISAYTD-VV-HPDLTCFTFSSGM--KSADVMTILPKLAEIP-IDGFIITKM 352 (407)
T ss_pred CCEEEEECCCCCccC--------HHHHHHHHHHhh-cc-CCceEEEECCCcc--cHHHHHHHHHhcCcCC-CCEEEEEcc
Confidence 478999999996532 122333333322 12 4444444443322 2344556666666533 355679999
Q ss_pred Ccc
Q 004351 212 DTK 214 (759)
Q Consensus 212 D~~ 214 (759)
|-.
T Consensus 353 DET 355 (407)
T PRK12726 353 DET 355 (407)
T ss_pred cCC
Confidence 985
No 271
>PRK13796 GTPase YqeH; Provisional
Probab=95.99 E-value=0.013 Score=65.44 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=21.0
Q ss_pred EEEEEeccCCchHHHHHHHhCCc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQ 48 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~ 48 (759)
.++|||.+++|||||||+|++..
T Consensus 162 ~v~vvG~~NvGKSTLiN~L~~~~ 184 (365)
T PRK13796 162 DVYVVGVTNVGKSTLINRIIKEI 184 (365)
T ss_pred eEEEEcCCCCcHHHHHHHHHhhc
Confidence 68999999999999999999744
No 272
>COG1161 Predicted GTPases [General function prediction only]
Probab=95.99 E-value=0.017 Score=63.63 Aligned_cols=24 Identities=42% Similarity=0.538 Sum_probs=22.6
Q ss_pred EEEEEeccCCchHHHHHHHhCCcc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQF 49 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~f 49 (759)
.+.|||-.++|||||||+|+|...
T Consensus 134 ~v~vvG~PNVGKSslIN~L~~k~~ 157 (322)
T COG1161 134 RVGVVGYPNVGKSTLINRLLGKKV 157 (322)
T ss_pred EEEEEcCCCCcHHHHHHHHhcccc
Confidence 489999999999999999999986
No 273
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.95 E-value=0.044 Score=56.11 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=18.7
Q ss_pred EEEEeccCCchHHHHHHHhCCc
Q 004351 27 VLVVGHQTDGKSALVEALMGFQ 48 (759)
Q Consensus 27 IVVVG~QSsGKSSLLEAL~G~~ 48 (759)
|++||.+|+||+|.+=-|.-.-
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~ 25 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARL 25 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCchHhHHHHHHHHH
Confidence 7899999999999998777543
No 274
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.93 E-value=0.034 Score=67.27 Aligned_cols=24 Identities=21% Similarity=0.223 Sum_probs=21.2
Q ss_pred EEEEEeccCCchHHHHHHHhCCcc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQF 49 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~f 49 (759)
-|++||.+|+||||.+--|.+.-.
T Consensus 187 Vi~lVGpnGvGKTTTiaKLA~~~~ 210 (767)
T PRK14723 187 VLALVGPTGVGKTTTTAKLAARCV 210 (767)
T ss_pred EEEEECCCCCcHHHHHHHHHhhHH
Confidence 468999999999999999999753
No 275
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=95.90 E-value=0.0098 Score=57.91 Aligned_cols=45 Identities=24% Similarity=0.229 Sum_probs=34.4
Q ss_pred CCCCEEEEEeccCCchHHHHHHHhCCccceec-CccccccceEEEE
Q 004351 22 FDAPAVLVVGHQTDGKSALVEALMGFQFNHVG-GGTKTRRPITLHM 66 (759)
Q Consensus 22 i~lPqIVVVG~QSsGKSSLLEAL~G~~fp~~g-~g~cTR~P~~l~l 66 (759)
..-++++++|..++||||++|+|+|..-..++ ...+||.+..+.+
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~ 143 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKL 143 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEe
Confidence 45688999999999999999999997632233 3466787776654
No 276
>PRK10867 signal recognition particle protein; Provisional
Probab=95.81 E-value=0.052 Score=62.10 Aligned_cols=70 Identities=19% Similarity=0.314 Sum_probs=43.8
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHHHHHhCcCCCeEEEEecCC
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKL 211 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~RTIgVlTK~ 211 (759)
.++.||||||..... +.....+..+ .+.+ .|+.++|++.+. ..+.+.+.++.+.....-+-.|+||.
T Consensus 184 ~DvVIIDTaGrl~~d--------~~lm~eL~~i-~~~v-~p~evllVlda~---~gq~av~~a~~F~~~~~i~giIlTKl 250 (433)
T PRK10867 184 YDVVIVDTAGRLHID--------EELMDELKAI-KAAV-NPDEILLVVDAM---TGQDAVNTAKAFNEALGLTGVILTKL 250 (433)
T ss_pred CCEEEEeCCCCcccC--------HHHHHHHHHH-HHhh-CCCeEEEEEecc---cHHHHHHHHHHHHhhCCCCEEEEeCc
Confidence 578999999986532 1223333333 2233 455565555432 34677888888775555678899999
Q ss_pred Ccc
Q 004351 212 DTK 214 (759)
Q Consensus 212 D~~ 214 (759)
|-.
T Consensus 251 D~~ 253 (433)
T PRK10867 251 DGD 253 (433)
T ss_pred cCc
Confidence 964
No 277
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=95.74 E-value=0.02 Score=57.33 Aligned_cols=28 Identities=36% Similarity=0.367 Sum_probs=24.5
Q ss_pred CEEEEEeccCCchHHHHHHHhCCcccee
Q 004351 25 PAVLVVGHQTDGKSALVEALMGFQFNHV 52 (759)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~~fp~~ 52 (759)
-+++|+|..++|||||+|+|+|....++
T Consensus 118 ~~~~~vG~pnvGKSslin~l~~~~~~~~ 145 (172)
T cd04178 118 ITVGVVGFPNVGKSSLINSLKRSRACNV 145 (172)
T ss_pred cEEEEEcCCCCCHHHHHHHHhCccccee
Confidence 5899999999999999999999775434
No 278
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=95.70 E-value=0.08 Score=51.65 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=19.5
Q ss_pred EEEEeccCCchHHHHHHHhCCc
Q 004351 27 VLVVGHQTDGKSALVEALMGFQ 48 (759)
Q Consensus 27 IVVVG~QSsGKSSLLEAL~G~~ 48 (759)
|.++|..++|||+++..|...-
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~ 23 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITAL 23 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHH
Confidence 7899999999999999997653
No 279
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.65 E-value=0.021 Score=64.08 Aligned_cols=24 Identities=17% Similarity=0.174 Sum_probs=21.4
Q ss_pred EEEEEeccCCchHHHHHHHhCCcc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQF 49 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~f 49 (759)
-++++|..|+|||+++-.|.+.-.
T Consensus 139 ii~lvGptGvGKTTtiakLA~~~~ 162 (374)
T PRK14722 139 VFALMGPTGVGKTTTTAKLAARCV 162 (374)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998643
No 280
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.58 E-value=0.027 Score=64.36 Aligned_cols=71 Identities=15% Similarity=0.159 Sum_probs=42.6
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHHHHHhCcCCCeEEEEecCC
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKL 211 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~RTIgVlTK~ 211 (759)
.++.||||||..... ......+..++.. ...+..++|++.+.. ......++++.+..-+. +=.|+||.
T Consensus 300 ~DlVlIDt~G~~~~d--------~~~~~~L~~ll~~-~~~~~~~~LVl~a~~--~~~~l~~~~~~f~~~~~-~~vI~TKl 367 (424)
T PRK05703 300 CDVILIDTAGRSQRD--------KRLIEELKALIEF-SGEPIDVYLVLSATT--KYEDLKDIYKHFSRLPL-DGLIFTKL 367 (424)
T ss_pred CCEEEEeCCCCCCCC--------HHHHHHHHHHHhc-cCCCCeEEEEEECCC--CHHHHHHHHHHhCCCCC-CEEEEecc
Confidence 589999999995431 1224445555552 224445566655432 23344566677765553 45789999
Q ss_pred Ccc
Q 004351 212 DTK 214 (759)
Q Consensus 212 D~~ 214 (759)
|-.
T Consensus 368 Det 370 (424)
T PRK05703 368 DET 370 (424)
T ss_pred ccc
Confidence 985
No 281
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=95.56 E-value=0.079 Score=57.67 Aligned_cols=25 Identities=40% Similarity=0.364 Sum_probs=22.0
Q ss_pred CCCEEEEEeccCCchHHHHHHHhCC
Q 004351 23 DAPAVLVVGHQTDGKSALVEALMGF 47 (759)
Q Consensus 23 ~lPqIVVVG~QSsGKSSLLEAL~G~ 47 (759)
.-+.|+|+|.+|+|||||++.|.+.
T Consensus 33 ~~~~i~i~G~~G~GKttl~~~l~~~ 57 (300)
T TIGR00750 33 NAHRVGITGTPGAGKSTLLEALGME 57 (300)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3567899999999999999999875
No 282
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=95.50 E-value=0.22 Score=59.88 Aligned_cols=90 Identities=11% Similarity=0.147 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhhhhhhHHHHHHHHhhcccchhhhhchhhHHHHHHhhhhhHHHHHH
Q 004351 649 ERIVYALVQQIFHGIREYFLASAELKFNCFLLMPVVDKLPALLREDLESAFEGDLDNVFDITNLRHSLSQQKSDTEIEMK 728 (759)
Q Consensus 649 ~~~V~~l~~~~f~~iR~~~~~~~~~k~n~ffL~P~~~~l~~~l~~~l~~~~~~~~~~~f~~~~~~~~l~~~~~~l~~~~~ 728 (759)
..+...++..-|.-++..++-+|+.-.|++++-++-++|+.+|-.+|.. .+++++ +|-... ..+.++|+.++..++
T Consensus 566 ~~~i~~~~~sY~~iv~~~i~d~vpk~i~~~lv~~~k~~l~~~l~~~L~~-~~~~~~-~ll~E~--~~i~~~R~~~~~~l~ 641 (657)
T KOG0446|consen 566 TEEISSCPESYLNIVSDKLVDTVPKALNHELLNEFKDDLPNELDQRLYA-GDEQLE-SLLKED--PRIKRRRELQQKRLL 641 (657)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chhHHH-HHHccC--HHHHHHHHHHHHHHH
Confidence 4667778888888888999999999999999999999999999999999 655554 555554 788899999999999
Q ss_pred HHHHHHHHHHHHHH
Q 004351 729 RIKKLKEKFKLIHE 742 (759)
Q Consensus 729 ~~~~~~~kf~~~~~ 742 (759)
.+++++.-+..+..
T Consensus 642 ~L~~a~~ii~~~~~ 655 (657)
T KOG0446|consen 642 ALQKALSILATVAQ 655 (657)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999988887754
No 283
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=95.47 E-value=0.041 Score=52.25 Aligned_cols=27 Identities=26% Similarity=0.306 Sum_probs=24.4
Q ss_pred EEEEEeccCCchHHHHHHHhCCcccee
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFNHV 52 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp~~ 52 (759)
+|.+||..|+||++|.++|-|-...++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~lyk 29 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLYK 29 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhhc
Confidence 689999999999999999999987644
No 284
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=95.45 E-value=0.14 Score=57.57 Aligned_cols=81 Identities=19% Similarity=0.271 Sum_probs=50.1
Q ss_pred ccccceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccC-C------cCcH
Q 004351 116 QFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCS-D------WSNA 188 (759)
Q Consensus 116 ~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~-D------~~~~ 188 (759)
+++-+.-....+.+ .+++||||+||- + +-+.+|+.. ++..++-||+|.+.. . ...|
T Consensus 70 GvTi~~~~~~fet~-k~~~tIiDaPGH-r--------------dFvknmItG-asqAD~aVLVV~a~~~efE~g~~~~gQ 132 (428)
T COG5256 70 GVTIDVAHSKFETD-KYNFTIIDAPGH-R--------------DFVKNMITG-ASQADVAVLVVDARDGEFEAGFGVGGQ 132 (428)
T ss_pred ceEEEEEEEEeecC-CceEEEeeCCch-H--------------HHHHHhhcc-hhhccEEEEEEECCCCccccccccCCc
Confidence 34434444444443 468999999993 2 456677765 456677777775432 2 2222
Q ss_pred --HHHHHHHHhCcCCCeEEEEecCCCccc
Q 004351 189 --TTRRVVMQIDPELKRTIIVSTKLDTKI 215 (759)
Q Consensus 189 --~~l~lar~~Dp~g~RTIgVlTK~D~~~ 215 (759)
+-.-+++.+. -..-|.++||+|...
T Consensus 133 trEH~~La~tlG--i~~lIVavNKMD~v~ 159 (428)
T COG5256 133 TREHAFLARTLG--IKQLIVAVNKMDLVS 159 (428)
T ss_pred hhHHHHHHHhcC--CceEEEEEEcccccc
Confidence 2344666653 368899999999963
No 285
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=95.32 E-value=0.018 Score=60.64 Aligned_cols=37 Identities=16% Similarity=0.217 Sum_probs=23.6
Q ss_pred EEeccCCchHHHHHHHhCCccceecCccccccceEEEEeeCCC
Q 004351 29 VVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPL 71 (759)
Q Consensus 29 VVG~QSsGKSSLLEAL~G~~fp~~g~g~cTR~P~~l~l~~~~~ 71 (759)
|+|.-||||||+..++..+--- . -|.+..|.|-++..
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~-~-----~~~~~~vNLDPa~~ 37 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLES-N-----GRDVYIVNLDPAVE 37 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTT-T------S-EEEEE--TT-S
T ss_pred CCCCCCCCHHHHHHHHHHHHHh-c-----cCCceEEEcchHhc
Confidence 7999999999999999874421 1 26677777765543
No 286
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.28 E-value=0.089 Score=56.14 Aligned_cols=28 Identities=25% Similarity=0.388 Sum_probs=23.8
Q ss_pred CCCEEEEEeccCCchHHHHHHHhCCccc
Q 004351 23 DAPAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 23 ~lPqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.-+-|+|||--||||++++.-|.+.-.-
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~ 45 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHA 45 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhh
Confidence 3457999999999999999999887653
No 287
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.28 E-value=0.05 Score=62.12 Aligned_cols=70 Identities=19% Similarity=0.283 Sum_probs=44.6
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHHHHHhCcCCCeEEEEecCC
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKL 211 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~RTIgVlTK~ 211 (759)
.++.||||||..... .....++..+.. +-+|+.++|++.+. ..+++.+.|+.+...-.-+=.|+||.
T Consensus 183 ~DvVIIDTaGr~~~d--------~~l~~eL~~i~~--~~~p~e~lLVvda~---tgq~~~~~a~~f~~~v~i~giIlTKl 249 (428)
T TIGR00959 183 FDVVIVDTAGRLQID--------EELMEELAAIKE--ILNPDEILLVVDAM---TGQDAVNTAKTFNERLGLTGVVLTKL 249 (428)
T ss_pred CCEEEEeCCCccccC--------HHHHHHHHHHHH--hhCCceEEEEEecc---chHHHHHHHHHHHhhCCCCEEEEeCc
Confidence 578999999986532 122344434432 23566666666533 34677888887765445677889999
Q ss_pred Ccc
Q 004351 212 DTK 214 (759)
Q Consensus 212 D~~ 214 (759)
|-.
T Consensus 250 D~~ 252 (428)
T TIGR00959 250 DGD 252 (428)
T ss_pred cCc
Confidence 964
No 288
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.20 E-value=0.06 Score=61.18 Aligned_cols=72 Identities=25% Similarity=0.205 Sum_probs=41.6
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhc-CccceeEeecccCCcCcHHHHHHHHHhCcCCCeEEEEecC
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQ-HREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTK 210 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~-~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~RTIgVlTK 210 (759)
.++.||||||..... ....+.+.++....-. .+...+|++.+.. ......++++.+..-+ =+=.|+||
T Consensus 300 ~D~VLIDTaGr~~rd--------~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~--~~~~~~~~~~~f~~~~-~~glIlTK 368 (432)
T PRK12724 300 SELILIDTAGYSHRN--------LEQLERMQSFYSCFGEKDSVENLLVLSSTS--SYHHTLTVLKAYESLN-YRRILLTK 368 (432)
T ss_pred CCEEEEeCCCCCccC--------HHHHHHHHHHHHhhcCCCCCeEEEEEeCCC--CHHHHHHHHHHhcCCC-CCEEEEEc
Confidence 578999999986432 1234444444432211 2445666666543 2334556666665433 35578999
Q ss_pred CCcc
Q 004351 211 LDTK 214 (759)
Q Consensus 211 ~D~~ 214 (759)
.|-.
T Consensus 369 LDEt 372 (432)
T PRK12724 369 LDEA 372 (432)
T ss_pred ccCC
Confidence 9985
No 289
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.10 E-value=0.14 Score=50.51 Aligned_cols=72 Identities=17% Similarity=0.248 Sum_probs=39.9
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHHHHHhCcCCCeEEEEecCC
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKL 211 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~RTIgVlTK~ 211 (759)
.++.|||+||..... ......+..+.. . ..+..++|++.+. ....+.+.+..+-....-+-.|+||.
T Consensus 83 ~d~viiDt~g~~~~~--------~~~l~~l~~l~~-~-~~~~~~~lVv~~~---~~~~~~~~~~~~~~~~~~~~viltk~ 149 (173)
T cd03115 83 FDVVIVDTAGRLQID--------ENLMEELKKIKR-V-VKPDEVLLVVDAM---TGQDAVNQAKAFNEALGITGVILTKL 149 (173)
T ss_pred CCEEEEECcccchhh--------HHHHHHHHHHHh-h-cCCCeEEEEEECC---CChHHHHHHHHHHhhCCCCEEEEECC
Confidence 568899999996531 112333333322 2 2366666666543 22334455555432222578899999
Q ss_pred Ccccc
Q 004351 212 DTKIP 216 (759)
Q Consensus 212 D~~~~ 216 (759)
|....
T Consensus 150 D~~~~ 154 (173)
T cd03115 150 DGDAR 154 (173)
T ss_pred cCCCC
Confidence 98643
No 290
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.06 E-value=0.05 Score=61.92 Aligned_cols=71 Identities=23% Similarity=0.186 Sum_probs=41.3
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHHHHHhCcCCCeEEEEecCC
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKL 211 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~RTIgVlTK~ 211 (759)
.++.||||+|..+.. ....+++..+.. ...+...+|++.++. ......++++.+...+ =+=.|+||.
T Consensus 270 ~d~VLIDTaGrsqrd--------~~~~~~l~~l~~--~~~~~~~~LVl~at~--~~~~~~~~~~~f~~~~-~~~~I~TKl 336 (420)
T PRK14721 270 KHMVLIDTVGMSQRD--------QMLAEQIAMLSQ--CGTQVKHLLLLNATS--SGDTLDEVISAYQGHG-IHGCIITKV 336 (420)
T ss_pred CCEEEecCCCCCcch--------HHHHHHHHHHhc--cCCCceEEEEEcCCC--CHHHHHHHHHHhcCCC-CCEEEEEee
Confidence 478999999986531 112333333321 224556677776543 2334456667766543 355789999
Q ss_pred Cccc
Q 004351 212 DTKI 215 (759)
Q Consensus 212 D~~~ 215 (759)
|-..
T Consensus 337 DEt~ 340 (420)
T PRK14721 337 DEAA 340 (420)
T ss_pred eCCC
Confidence 9853
No 291
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.81 E-value=0.089 Score=61.35 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=20.0
Q ss_pred EEEEEeccCCchHHHHHHHhCC
Q 004351 26 AVLVVGHQTDGKSALVEALMGF 47 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~ 47 (759)
-|+++|..|+|||+++..|.+.
T Consensus 352 vIaLVGPtGvGKTTtaakLAa~ 373 (559)
T PRK12727 352 VIALVGPTGAGKTTTIAKLAQR 373 (559)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999874
No 292
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.77 E-value=0.21 Score=51.29 Aligned_cols=67 Identities=19% Similarity=0.169 Sum_probs=50.1
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCc--Cc-HHHHHHHHHhCcCCCeEEEEec
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDW--SN-ATTRRVVMQIDPELKRTIIVST 209 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~--~~-~~~l~lar~~Dp~g~RTIgVlT 209 (759)
-|-|.||-|= +..+.|..+|.+....|+|++--+++. .| ..|++.+++.-+.+-..+.|-|
T Consensus 62 ~lQiWDtaGQ----------------erf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGN 125 (207)
T KOG0078|consen 62 KLQIWDTAGQ----------------ERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGN 125 (207)
T ss_pred EEEEEEcccc----------------hhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeec
Confidence 4667887664 345689999999999999987432222 22 2277888888888899999999
Q ss_pred CCCccc
Q 004351 210 KLDTKI 215 (759)
Q Consensus 210 K~D~~~ 215 (759)
|+|+..
T Consensus 126 K~D~~~ 131 (207)
T KOG0078|consen 126 KCDLEE 131 (207)
T ss_pred cccccc
Confidence 999965
No 293
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=94.76 E-value=0.087 Score=53.95 Aligned_cols=116 Identities=23% Similarity=0.249 Sum_probs=70.0
Q ss_pred CCEEEEEeccCCchHHHHHHHhCCccceecCccccccceEEEEeeCCCCCCCceEEecCCCCCCcccccChHHHHHHHHH
Q 004351 24 APAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEIQSFIEA 103 (759)
Q Consensus 24 lPqIVVVG~QSsGKSSLLEAL~G~~fp~~g~g~cTR~P~~l~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~l~~~Ie~ 103 (759)
...|||+|..+.|||+|.--+++-.|... +.|+.. |
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~---------------y~ptie---------d-------------------- 38 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFVED---------------YDPTIE---------D-------------------- 38 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccccccc---------------cCCCcc---------c--------------------
Confidence 35799999999999999888888887621 222210 0
Q ss_pred HHhhhhhccCCCccccceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeeccc-
Q 004351 104 ENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDC- 182 (759)
Q Consensus 104 ~~~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~- 182 (759)
+-..++. |. -..-.|.|+|++|-. ....|-..||...+..+|+..-+
T Consensus 39 -------------~y~k~~~--v~-~~~~~l~ilDt~g~~----------------~~~~~~~~~~~~~~gF~lVysitd 86 (196)
T KOG0395|consen 39 -------------SYRKELT--VD-GEVCMLEILDTAGQE----------------EFSAMRDLYIRNGDGFLLVYSITD 86 (196)
T ss_pred -------------cceEEEE--EC-CEEEEEEEEcCCCcc----------------cChHHHHHhhccCcEEEEEEECCC
Confidence 0001111 11 122356699999921 11256778999999998876422
Q ss_pred -C--CcCcHHHHHHHHHhCcCCCeEEEEecCCCccc
Q 004351 183 -S--DWSNATTRRVVMQIDPELKRTIIVSTKLDTKI 215 (759)
Q Consensus 183 -~--D~~~~~~l~lar~~Dp~g~RTIgVlTK~D~~~ 215 (759)
. +....-..++.+.-+..--++|.|.||.|+..
T Consensus 87 ~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~ 122 (196)
T KOG0395|consen 87 RSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLER 122 (196)
T ss_pred HHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchh
Confidence 1 22222222333333444468999999999953
No 294
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=94.63 E-value=0.12 Score=56.68 Aligned_cols=22 Identities=36% Similarity=0.456 Sum_probs=19.5
Q ss_pred EEEEeccCCchHHHHHHHhCCc
Q 004351 27 VLVVGHQTDGKSALVEALMGFQ 48 (759)
Q Consensus 27 IVVVG~QSsGKSSLLEAL~G~~ 48 (759)
|-.||=.|+||||||++++..+
T Consensus 162 VGLVG~PNaGKSTlls~vS~Ak 183 (369)
T COG0536 162 VGLVGLPNAGKSTLLSAVSAAK 183 (369)
T ss_pred cccccCCCCcHHHHHHHHhhcC
Confidence 4578999999999999998766
No 295
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=94.57 E-value=0.024 Score=57.33 Aligned_cols=28 Identities=32% Similarity=0.570 Sum_probs=25.0
Q ss_pred EEEEEeccCCchHHHHHHHhCCccceec
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFNHVG 53 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp~~g 53 (759)
.+.|+|..+||||+|||-|.||..|..|
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAGF~~P~~G 54 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAGFETPASG 54 (231)
T ss_pred EEEEECCCCccHHHHHHHHHhccCCCCc
Confidence 4779999999999999999999999543
No 296
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=94.55 E-value=0.043 Score=54.40 Aligned_cols=29 Identities=34% Similarity=0.457 Sum_probs=25.2
Q ss_pred CCEEEEEeccCCchHHHHHHHhCCcccee
Q 004351 24 APAVLVVGHQTDGKSALVEALMGFQFNHV 52 (759)
Q Consensus 24 lPqIVVVG~QSsGKSSLLEAL~G~~fp~~ 52 (759)
.+.++++|.+++|||||+++|.+..+..+
T Consensus 115 ~~~~~~~G~~~vGKstlin~l~~~~~~~~ 143 (171)
T cd01856 115 GIRAMVVGIPNVGKSTLINRLRGKKVAKV 143 (171)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCceee
Confidence 35899999999999999999999887433
No 297
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.54 E-value=0.19 Score=51.29 Aligned_cols=130 Identities=17% Similarity=0.214 Sum_probs=82.1
Q ss_pred CCEEEEEeccCCchHHHHHHHhCCccceecCccccccceEEEEeeCCCCCCCceEEecCCCCCCcccccChHHHHHHHHH
Q 004351 24 APAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEIQSFIEA 103 (759)
Q Consensus 24 lPqIVVVG~QSsGKSSLLEAL~G~~fp~~g~g~cTR~P~~l~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~l~~~Ie~ 103 (759)
+-.|+++||.+.|||-|+--+.+-.|+-+ -..| |.
T Consensus 9 lFKiiliGds~VGKtCL~~Rf~~~~f~e~--~~sT---IG---------------------------------------- 43 (205)
T KOG0084|consen 9 LFKIILIGDSGVGKTCLLLRFKDDTFTES--YIST---IG---------------------------------------- 43 (205)
T ss_pred EEEEEEECCCCcChhhhhhhhccCCcchh--hcce---ee----------------------------------------
Confidence 56799999999999999999888888721 1110 00
Q ss_pred HHhhhhhccCCCccccceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeec--c
Q 004351 104 ENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLE--D 181 (759)
Q Consensus 104 ~~~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~--~ 181 (759)
-.|. ...+++.|... -|-|=||-|= +..+.++.+|-++.|.||++.- .
T Consensus 44 -----------VDf~--~rt~e~~gk~i-KlQIWDTAGQ----------------ERFrtit~syYR~ahGii~vyDiT~ 93 (205)
T KOG0084|consen 44 -----------VDFK--IRTVELDGKTI-KLQIWDTAGQ----------------ERFRTITSSYYRGAHGIIFVYDITK 93 (205)
T ss_pred -----------eEEE--EEEeeecceEE-EEEeeecccc----------------HHHhhhhHhhccCCCeEEEEEEccc
Confidence 0121 22344444433 5666776653 4577999999999999998852 2
Q ss_pred cCCcCc-HHHHHHHHHhCcCCCeEEEEecCCCcccccccChhhHHHhh
Q 004351 182 CSDWSN-ATTRRVVMQIDPELKRTIIVSTKLDTKIPQFARASDVEVFL 228 (759)
Q Consensus 182 ~~D~~~-~~~l~lar~~Dp~g~RTIgVlTK~D~~~~~~~~~~~~~~~L 228 (759)
-.-+.+ ..|+.=++++-...-.-+.|-+|.|+.....-...++..|.
T Consensus 94 ~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa 141 (205)
T KOG0084|consen 94 QESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFA 141 (205)
T ss_pred HHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHH
Confidence 111222 23455555555556678999999999755443344555553
No 298
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=94.47 E-value=0.17 Score=56.61 Aligned_cols=24 Identities=29% Similarity=0.207 Sum_probs=22.4
Q ss_pred EEEEEeccCCchHHHHHHHhCCcc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQF 49 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~f 49 (759)
.+-+||-.++|||||+++|++...
T Consensus 4 k~GivGlPn~GKSTlfnaLT~~~~ 27 (368)
T TIGR00092 4 SGGIVGLPNVGKSTLFAATTNLLG 27 (368)
T ss_pred eEEEECCCCCChHHHHHHHhCCCc
Confidence 578999999999999999999987
No 299
>PRK14845 translation initiation factor IF-2; Provisional
Probab=94.44 E-value=0.15 Score=63.90 Aligned_cols=67 Identities=21% Similarity=0.284 Sum_probs=40.4
Q ss_pred CCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHHHHHhCcCCCeEEEEecC
Q 004351 131 CPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTK 210 (759)
Q Consensus 131 ~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~RTIgVlTK 210 (759)
.|.++|+||||... ...|...+....+.++|+|.....+. ......+..+...+...|.|+||
T Consensus 525 ~p~i~fiDTPGhe~----------------F~~lr~~g~~~aDivlLVVDa~~Gi~-~qT~e~I~~lk~~~iPiIVViNK 587 (1049)
T PRK14845 525 IPGLLFIDTPGHEA----------------FTSLRKRGGSLADLAVLVVDINEGFK-PQTIEAINILRQYKTPFVVAANK 587 (1049)
T ss_pred cCcEEEEECCCcHH----------------HHHHHHhhcccCCEEEEEEECcccCC-HhHHHHHHHHHHcCCCEEEEEEC
Confidence 58899999999411 12444555666666666554322222 23333333333346689999999
Q ss_pred CCcc
Q 004351 211 LDTK 214 (759)
Q Consensus 211 ~D~~ 214 (759)
+|+.
T Consensus 588 iDL~ 591 (1049)
T PRK14845 588 IDLI 591 (1049)
T ss_pred CCCc
Confidence 9985
No 300
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.40 E-value=0.35 Score=54.64 Aligned_cols=71 Identities=18% Similarity=0.238 Sum_probs=40.4
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHHHHHhCcCCCeEEEEecCC
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKL 211 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~RTIgVlTK~ 211 (759)
.++.||||||..... ......+.+++.. +..+..++|++.+... .....++.+.+.+-+ -+=.|+||.
T Consensus 255 ~DlVLIDTaGr~~~~--------~~~l~el~~~l~~-~~~~~e~~LVlsat~~--~~~~~~~~~~~~~~~-~~~~I~TKl 322 (388)
T PRK12723 255 FDLVLVDTIGKSPKD--------FMKLAEMKELLNA-CGRDAEFHLAVSSTTK--TSDVKEIFHQFSPFS-YKTVIFTKL 322 (388)
T ss_pred CCEEEEcCCCCCccC--------HHHHHHHHHHHHh-cCCCCeEEEEEcCCCC--HHHHHHHHHHhcCCC-CCEEEEEec
Confidence 479999999986421 1123444444433 2234356677765432 223345666664422 356789999
Q ss_pred Ccc
Q 004351 212 DTK 214 (759)
Q Consensus 212 D~~ 214 (759)
|-.
T Consensus 323 Det 325 (388)
T PRK12723 323 DET 325 (388)
T ss_pred cCC
Confidence 985
No 301
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=94.39 E-value=0.03 Score=55.62 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=22.6
Q ss_pred CEEEEEeccCCchHHHHHHHhCCc
Q 004351 25 PAVLVVGHQTDGKSALVEALMGFQ 48 (759)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~~ 48 (759)
..+|++|..|+|||||||+|+|-.
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 689999999999999999999975
No 302
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=94.29 E-value=0.083 Score=56.75 Aligned_cols=29 Identities=31% Similarity=0.463 Sum_probs=25.0
Q ss_pred CCEEEEEeccCCchHHHHHHHhCCcccee
Q 004351 24 APAVLVVGHQTDGKSALVEALMGFQFNHV 52 (759)
Q Consensus 24 lPqIVVVG~QSsGKSSLLEAL~G~~fp~~ 52 (759)
..+++|||.+++|||||+|+|+|.....+
T Consensus 118 ~~~~~~vG~~nvGKSslin~l~~~~~~~~ 146 (276)
T TIGR03596 118 PIRAMIVGIPNVGKSTLINRLAGKKVAKV 146 (276)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCcccc
Confidence 35799999999999999999999876544
No 303
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=94.15 E-value=0.21 Score=57.67 Aligned_cols=35 Identities=23% Similarity=0.452 Sum_probs=27.5
Q ss_pred CCCCEEEEEeccCCchHHHHHHHhCCccceecCcc
Q 004351 22 FDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGT 56 (759)
Q Consensus 22 i~lPqIVVVG~QSsGKSSLLEAL~G~~fp~~g~g~ 56 (759)
...|-++|+|+-=-||||||-.|=+-.+-....|.
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGG 37 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGG 37 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCccccccCCc
Confidence 45689999999999999999999777765443333
No 304
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=93.87 E-value=0.33 Score=56.21 Aligned_cols=72 Identities=17% Similarity=0.181 Sum_probs=42.4
Q ss_pred EEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHHHHHhCcCCCeE
Q 004351 125 KVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRT 204 (759)
Q Consensus 125 eI~~p~~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~RT 204 (759)
.+.-|..-..||.||||--.- ..|=.+ -.+-..|+..|+++.|-.-.++++.++.+...+-..
T Consensus 194 ~V~~p~G~~iTFLDTPGHaAF----------------~aMRaR-GA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~Vpi 256 (683)
T KOG1145|consen 194 TVTLPSGKSITFLDTPGHAAF----------------SAMRAR-GANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPI 256 (683)
T ss_pred EEecCCCCEEEEecCCcHHHH----------------HHHHhc-cCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCE
Confidence 455566678999999997321 122111 123334666666655444444444444443345679
Q ss_pred EEEecCCCc
Q 004351 205 IIVSTKLDT 213 (759)
Q Consensus 205 IgVlTK~D~ 213 (759)
|..+||+|+
T Consensus 257 VvAinKiDk 265 (683)
T KOG1145|consen 257 VVAINKIDK 265 (683)
T ss_pred EEEEeccCC
Confidence 999999997
No 305
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=93.73 E-value=0.31 Score=62.59 Aligned_cols=46 Identities=28% Similarity=0.406 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhhhh-cCCCCCCCEEEEEeccCCchHHHHHHHhCCccc
Q 004351 4 LYEAYNELHGLAQE-LETPFDAPAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 4 L~~~~n~L~~l~~~-~~~~i~lPqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
+-+++..|+...-. -+.-..||=.+|+|..+|||||+|..- |..||
T Consensus 90 ~~~a~~~Lk~~~~~~~~~lY~LPWYlviG~~gsGKtt~l~~s-gl~~p 136 (1169)
T TIGR03348 90 FNEALALLKRSRLGGRRYLYDLPWYLVIGPPGSGKTTLLQNS-GLKFP 136 (1169)
T ss_pred HHHHHHHHhhccccCchhhhcCCCEEEECCCCCchhHHHHhC-CCCCc
Confidence 34555555544310 123569999999999999999999987 88887
No 306
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.69 E-value=0.25 Score=57.24 Aligned_cols=25 Identities=16% Similarity=0.138 Sum_probs=21.8
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
-|.+||.+|+||||++--|.+.-.+
T Consensus 258 Vi~LvGpnGvGKTTTiaKLA~~~~~ 282 (484)
T PRK06995 258 VFALMGPTGVGKTTTTAKLAARCVM 282 (484)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHH
Confidence 3789999999999999999986544
No 307
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=93.62 E-value=0.072 Score=57.58 Aligned_cols=29 Identities=28% Similarity=0.455 Sum_probs=24.7
Q ss_pred CCEEEEEeccCCchHHHHHHHhCCcccee
Q 004351 24 APAVLVVGHQTDGKSALVEALMGFQFNHV 52 (759)
Q Consensus 24 lPqIVVVG~QSsGKSSLLEAL~G~~fp~~ 52 (759)
-..++|||..++|||||+|+|.|.....+
T Consensus 121 ~~~~~~~G~pnvGKSsliN~l~~~~~~~~ 149 (287)
T PRK09563 121 AIRAMIIGIPNVGKSTLINRLAGKKIAKT 149 (287)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcccc
Confidence 34799999999999999999999875433
No 308
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=93.57 E-value=0.06 Score=45.04 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=20.0
Q ss_pred EEEEEeccCCchHHHHHHHhCCc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQ 48 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~ 48 (759)
-.++.|+.+|||||+|+||.=.=
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999986433
No 309
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=93.44 E-value=0.058 Score=50.80 Aligned_cols=25 Identities=40% Similarity=0.549 Sum_probs=23.0
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
-++|+|..++|||+||++|+|.--|
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~~~ 37 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLLPP 37 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSSHE
T ss_pred EEEEEccCCCccccceeeecccccc
Confidence 4789999999999999999999766
No 310
>PRK12289 GTPase RsgA; Reviewed
Probab=93.16 E-value=0.08 Score=59.04 Aligned_cols=27 Identities=30% Similarity=0.282 Sum_probs=23.0
Q ss_pred EEEEEeccCCchHHHHHHHhCCcccee
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFNHV 52 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp~~ 52 (759)
.+|++|..|+|||||||+|+|-.-..+
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t 200 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRV 200 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCcccccc
Confidence 489999999999999999998664433
No 311
>KOG2203 consensus GTP-binding protein [General function prediction only]
Probab=93.04 E-value=0.058 Score=61.98 Aligned_cols=31 Identities=35% Similarity=0.560 Sum_probs=27.8
Q ss_pred CCCCCCEEEEEeccCCchHHHHHHHhCCccc
Q 004351 20 TPFDAPAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 20 ~~i~lPqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
-.++---|.|+|.||||||+|||-|.|-.|-
T Consensus 33 ~Gl~YhVVavmG~QSSGKSTLLN~LFgTnF~ 63 (772)
T KOG2203|consen 33 CGLSYHVVAVMGSQSSGKSTLLNHLFGTNFR 63 (772)
T ss_pred cCcceeEEEEecCcccchHHHHHHHhccChH
Confidence 4567778999999999999999999999985
No 312
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=92.64 E-value=0.08 Score=54.94 Aligned_cols=32 Identities=28% Similarity=0.391 Sum_probs=26.9
Q ss_pred CCCCCCE---EEEEeccCCchHHHHHHHhCCccce
Q 004351 20 TPFDAPA---VLVVGHQTDGKSALVEALMGFQFNH 51 (759)
Q Consensus 20 ~~i~lPq---IVVVG~QSsGKSSLLEAL~G~~fp~ 51 (759)
..+++|+ ++|+|..+||||+|+++|+|--.|.
T Consensus 25 ~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t 59 (263)
T COG1101 25 LSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPT 59 (263)
T ss_pred CceeecCCceEEEEcCCCccHHHHHHHhhCccccC
Confidence 4555664 8999999999999999999987773
No 313
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=92.55 E-value=0.32 Score=56.64 Aligned_cols=81 Identities=14% Similarity=0.277 Sum_probs=48.1
Q ss_pred CccccceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeeccc-CCc-----CcH
Q 004351 115 NQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDC-SDW-----SNA 188 (759)
Q Consensus 115 ~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~-~D~-----~~~ 188 (759)
.+|+-++=...++ +.-..+||+|.||... -+-+|+.. +...+.-||||.++ ..| .+.
T Consensus 239 rGvTm~v~~~~fe-s~~~~~tliDaPGhkd---------------Fi~nmi~g-~sqaD~avLvvd~s~~~FE~gfd~~g 301 (603)
T KOG0458|consen 239 RGVTMDVKTTWFE-SKSKIVTLIDAPGHKD---------------FIPNMISG-ASQADVAVLVVDASTGEFESGFDPGG 301 (603)
T ss_pred cceeEEeeeEEEe-cCceeEEEecCCCccc---------------cchhhhcc-ccccceEEEEEECCcchhhhccCCCC
Confidence 3577666666666 4457899999999422 12244443 23445566766433 212 222
Q ss_pred HH---HHHHHHhCcCCCeEEEEecCCCcc
Q 004351 189 TT---RRVVMQIDPELKRTIIVSTKLDTK 214 (759)
Q Consensus 189 ~~---l~lar~~Dp~g~RTIgVlTK~D~~ 214 (759)
+. ..+++.+. -...|+++||+|++
T Consensus 302 QtrEha~llr~Lg--i~qlivaiNKmD~V 328 (603)
T KOG0458|consen 302 QTREHALLLRSLG--ISQLIVAINKMDLV 328 (603)
T ss_pred chHHHHHHHHHcC--cceEEEEeeccccc
Confidence 33 33445553 35788999999997
No 314
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=92.54 E-value=0.1 Score=51.61 Aligned_cols=21 Identities=38% Similarity=0.547 Sum_probs=20.0
Q ss_pred EEEEeccCCchHHHHHHHhCC
Q 004351 27 VLVVGHQTDGKSALVEALMGF 47 (759)
Q Consensus 27 IVVVG~QSsGKSSLLEAL~G~ 47 (759)
||++|..+||||||++.|.+.
T Consensus 4 i~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 4 IVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEECCCCCCHHHHHHHHHcc
Confidence 899999999999999999995
No 315
>PRK12288 GTPase RsgA; Reviewed
Probab=92.53 E-value=0.082 Score=58.85 Aligned_cols=25 Identities=32% Similarity=0.353 Sum_probs=22.3
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.+|++|..|+|||||||+|+|-.-.
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~ 231 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEI 231 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccce
Confidence 3899999999999999999987644
No 316
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=92.48 E-value=0.11 Score=56.11 Aligned_cols=29 Identities=31% Similarity=0.351 Sum_probs=25.4
Q ss_pred CEEEEEeccCCchHHHHHHHhCCccceec
Q 004351 25 PAVLVVGHQTDGKSALVEALMGFQFNHVG 53 (759)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~~fp~~g 53 (759)
..++++|..++|||||+|+|+|...+.+|
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g 190 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATG 190 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhcccc
Confidence 46999999999999999999998876443
No 317
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=92.48 E-value=0.11 Score=50.05 Aligned_cols=21 Identities=29% Similarity=0.453 Sum_probs=19.8
Q ss_pred EEEEeccCCchHHHHHHHhCC
Q 004351 27 VLVVGHQTDGKSALVEALMGF 47 (759)
Q Consensus 27 IVVVG~QSsGKSSLLEAL~G~ 47 (759)
|+++|..++|||||++.|.+.
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 789999999999999999985
No 318
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=92.46 E-value=1.3 Score=44.18 Aligned_cols=116 Identities=20% Similarity=0.307 Sum_probs=69.6
Q ss_pred EEEEEeccCCchHHHHHHHhCCccceecCccccccceEEEEeeCCCCCCCceEEecCCCCCCcccccChHHHHHHHHHHH
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEIQSFIEAEN 105 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp~~g~g~cTR~P~~l~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~l~~~Ie~~~ 105 (759)
+++||||...||||||.-++.-+|+-- .+| .+ ..+=+.+.|+
T Consensus 10 rlivigdstvgkssll~~ft~gkfael---------------sdp-----tv---------------gvdffarlie--- 51 (213)
T KOG0091|consen 10 RLIVIGDSTVGKSSLLRYFTEGKFAEL---------------SDP-----TV---------------GVDFFARLIE--- 51 (213)
T ss_pred EEEEEcCCcccHHHHHHHHhcCccccc---------------CCC-----cc---------------chHHHHHHHh---
Confidence 689999999999999999999998721 022 11 1122344443
Q ss_pred hhhhhccCCCccccceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccC--
Q 004351 106 MRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCS-- 183 (759)
Q Consensus 106 ~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~-- 183 (759)
|.. +. + ..|.|-||.|- +..+++.++|-+|.=.++|+.--.+
T Consensus 52 --~~p-----g~-----r--------iklqlwdtagq----------------erfrsitksyyrnsvgvllvyditnr~ 95 (213)
T KOG0091|consen 52 --LRP-----GY-----R--------IKLQLWDTAGQ----------------ERFRSITKSYYRNSVGVLLVYDITNRE 95 (213)
T ss_pred --cCC-----Cc-----E--------EEEEEeeccch----------------HHHHHHHHHHhhcccceEEEEeccchh
Confidence 111 11 1 23566787664 4577999999988777666542111
Q ss_pred CcC-cHHHH-HHHHHhC-cCCCeEEEEecCCCccc
Q 004351 184 DWS-NATTR-RVVMQID-PELKRTIIVSTKLDTKI 215 (759)
Q Consensus 184 D~~-~~~~l-~lar~~D-p~g~RTIgVlTK~D~~~ 215 (759)
-+. -..++ +.++.+- |...=...|-+|.|+..
T Consensus 96 sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~S 130 (213)
T KOG0091|consen 96 SFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQS 130 (213)
T ss_pred hHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhh
Confidence 111 11232 3344444 66555667889999963
No 319
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=92.46 E-value=0.49 Score=46.28 Aligned_cols=64 Identities=9% Similarity=0.090 Sum_probs=40.9
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHH-----HHHHHHHhCcCCCeEEEE
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNAT-----TRRVVMQIDPELKRTIIV 207 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~-----~l~lar~~Dp~g~RTIgV 207 (759)
...+.|+||-.+ .+.|=..|.+.-+.|+.+|-++. ..+-+ -..+.-+--=.|...+..
T Consensus 66 tiklwD~gGq~r----------------frsmWerycR~v~aivY~VDaad-~~k~~~sr~EL~~LL~k~~l~gip~LVL 128 (186)
T KOG0075|consen 66 TIKLWDLGGQPR----------------FRSMWERYCRGVSAIVYVVDAAD-PDKLEASRSELHDLLDKPSLTGIPLLVL 128 (186)
T ss_pred EEEEEecCCCcc----------------HHHHHHHHhhcCcEEEEEeecCC-cccchhhHHHHHHHhcchhhcCCcEEEe
Confidence 445689998632 45788889988888887775442 22222 222332222367788888
Q ss_pred ecCCCc
Q 004351 208 STKLDT 213 (759)
Q Consensus 208 lTK~D~ 213 (759)
-||.|+
T Consensus 129 GnK~d~ 134 (186)
T KOG0075|consen 129 GNKIDL 134 (186)
T ss_pred cccccC
Confidence 899998
No 320
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=92.31 E-value=0.43 Score=57.72 Aligned_cols=83 Identities=19% Similarity=0.159 Sum_probs=49.6
Q ss_pred cccceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHHHHH
Q 004351 117 FSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQ 196 (759)
Q Consensus 117 fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~ 196 (759)
+....+.+..++ -.-++||||||-+.-. .+..+.| +--+..+++ +++.+-...+...+.|+
T Consensus 63 I~saa~s~~~~~--~~~iNlIDTPGHVDFt-----------~EV~rsl-----rvlDgavvV-vdaveGV~~QTEtv~rq 123 (697)
T COG0480 63 ITSAATTLFWKG--DYRINLIDTPGHVDFT-----------IEVERSL-----RVLDGAVVV-VDAVEGVEPQTETVWRQ 123 (697)
T ss_pred EeeeeeEEEEcC--ceEEEEeCCCCccccH-----------HHHHHHH-----HhhcceEEE-EECCCCeeecHHHHHHH
Confidence 334444455443 3468999999997542 1212222 222333433 34433334445566677
Q ss_pred hCcCCCeEEEEecCCCcccccc
Q 004351 197 IDPELKRTIIVSTKLDTKIPQF 218 (759)
Q Consensus 197 ~Dp~g~RTIgVlTK~D~~~~~~ 218 (759)
++..+-+.|.++||.|.+.-++
T Consensus 124 a~~~~vp~i~fiNKmDR~~a~~ 145 (697)
T COG0480 124 ADKYGVPRILFVNKMDRLGADF 145 (697)
T ss_pred HhhcCCCeEEEEECccccccCh
Confidence 7778899999999999986554
No 321
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=92.27 E-value=0.13 Score=54.45 Aligned_cols=28 Identities=29% Similarity=0.286 Sum_probs=24.0
Q ss_pred CEEEEEeccCCchHHHHHHHhCCcccee
Q 004351 25 PAVLVVGHQTDGKSALVEALMGFQFNHV 52 (759)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~~fp~~ 52 (759)
-.++++|..++|||||||+|.|..-..+
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t 148 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQV 148 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccc
Confidence 4789999999999999999999765433
No 322
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=92.25 E-value=0.1 Score=50.95 Aligned_cols=25 Identities=32% Similarity=0.420 Sum_probs=22.7
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.|+|+|+.++|||||+..+++-.|+
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f~ 26 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSYV 26 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCC
Confidence 5899999999999999998877776
No 323
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.15 E-value=0.35 Score=49.14 Aligned_cols=26 Identities=35% Similarity=0.488 Sum_probs=23.6
Q ss_pred EEEEEeccCCchHHHHHHHhCCccce
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFNH 51 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp~ 51 (759)
.||++|+.|+|||||+.-.+--+|.+
T Consensus 7 KvvLLG~~~VGKSSlV~Rfvk~~F~e 32 (200)
T KOG0092|consen 7 KVVLLGDSGVGKSSLVLRFVKDQFHE 32 (200)
T ss_pred EEEEECCCCCCchhhhhhhhhCcccc
Confidence 58999999999999999998888873
No 324
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.09 E-value=0.64 Score=45.46 Aligned_cols=65 Identities=20% Similarity=0.146 Sum_probs=45.5
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCC---cCcHHHHHHHHHhCcCCCeEEEEec
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSD---WSNATTRRVVMQIDPELKRTIIVST 209 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D---~~~~~~l~lar~~Dp~g~RTIgVlT 209 (759)
.|.+-||.|- +..+.+...|++....+||+.--.++ .+-+.+.-.++.+--.....|.|.|
T Consensus 71 klQiwDTagq----------------EryrtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgn 134 (193)
T KOG0093|consen 71 KLQIWDTAGQ----------------ERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGN 134 (193)
T ss_pred EEEEEecccc----------------hhhhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEec
Confidence 4566787765 23568899999999999999732221 1223344455666666778999999
Q ss_pred CCCc
Q 004351 210 KLDT 213 (759)
Q Consensus 210 K~D~ 213 (759)
|+|+
T Consensus 135 KCDm 138 (193)
T KOG0093|consen 135 KCDM 138 (193)
T ss_pred ccCC
Confidence 9998
No 325
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=92.02 E-value=0.2 Score=58.27 Aligned_cols=27 Identities=22% Similarity=0.491 Sum_probs=25.1
Q ss_pred CEEEEEeccCCchHHHHHHHhCCccce
Q 004351 25 PAVLVVGHQTDGKSALVEALMGFQFNH 51 (759)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~~fp~ 51 (759)
=+||+|||.++|||||+=||++-.||+
T Consensus 10 VRIvliGD~G~GKtSLImSL~~eef~~ 36 (625)
T KOG1707|consen 10 VRIVLIGDEGVGKTSLIMSLLEEEFVD 36 (625)
T ss_pred eEEEEECCCCccHHHHHHHHHhhhccc
Confidence 379999999999999999999999874
No 326
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.97 E-value=0.78 Score=47.55 Aligned_cols=23 Identities=39% Similarity=0.521 Sum_probs=19.1
Q ss_pred CEEEEEeccCCchHHHHHHHhCC
Q 004351 25 PAVLVVGHQTDGKSALVEALMGF 47 (759)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~ 47 (759)
|.+..+|.+.|||+||+=-|+--
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~g 61 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITG 61 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcC
Confidence 89999999999999987555443
No 327
>PRK00098 GTPase RsgA; Reviewed
Probab=91.93 E-value=0.15 Score=55.39 Aligned_cols=25 Identities=28% Similarity=0.244 Sum_probs=22.8
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.++++|..++|||||||+|+|..-+
T Consensus 166 ~~~~~G~sgvGKStlin~l~~~~~~ 190 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLNALAPDLEL 190 (298)
T ss_pred eEEEECCCCCCHHHHHHHHhCCcCC
Confidence 5899999999999999999998755
No 328
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=91.92 E-value=2 Score=50.89 Aligned_cols=25 Identities=36% Similarity=0.640 Sum_probs=23.1
Q ss_pred EEEEEeccCCchHHHHHHHhCCccce
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFNH 51 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp~ 51 (759)
.+++||..|||||||++.|+|+- |.
T Consensus 378 ~vaIvG~SGsGKSTL~~lL~g~~-p~ 402 (588)
T PRK11174 378 RIALVGPSGAGKTSLLNALLGFL-PY 402 (588)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC-CC
Confidence 47999999999999999999998 74
No 329
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=91.88 E-value=1.2 Score=53.17 Aligned_cols=134 Identities=19% Similarity=0.268 Sum_probs=79.3
Q ss_pred CCCCCCEEEEEeccCCchHHHHHHHhCCccceecCccccccceEEEEeeCCCCCCCceEEecCCCCCCcccccChHHHHH
Q 004351 20 TPFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEIQS 99 (759)
Q Consensus 20 ~~i~lPqIVVVG~QSsGKSSLLEAL~G~~fp~~g~g~cTR~P~~l~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~l~~ 99 (759)
..+.-|-++|+|+.-+||+-||.-|-|-.+--...|+.| ...+..+++.+.|.+
T Consensus 471 ~~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggit--------------------------qqIgAt~fp~~ni~e 524 (1064)
T KOG1144|consen 471 ENLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGIT--------------------------QQIGATYFPAENIRE 524 (1064)
T ss_pred hhcCCceEEEeecccccchHHHHHhhcccccccccccee--------------------------eeccccccchHHHHH
Confidence 578889999999999999999999988765322222222 011233444444544
Q ss_pred HHHHHHhhhhhccCCCccccceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEee
Q 004351 100 FIEAENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCL 179 (759)
Q Consensus 100 ~Ie~~~~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V 179 (759)
... .+.... ...| ..|.|-+|||||--+- .+|=...-+.-+-.||+|
T Consensus 525 ~tk----~~~~~~-K~~~------------kvPg~lvIdtpghEsF----------------tnlRsrgsslC~~aIlvv 571 (1064)
T KOG1144|consen 525 KTK----ELKKDA-KKRL------------KVPGLLVIDTPGHESF----------------TNLRSRGSSLCDLAILVV 571 (1064)
T ss_pred HHH----HHHhhh-hhhc------------CCCeeEEecCCCchhh----------------hhhhhccccccceEEEEe
Confidence 332 222111 0112 3699999999995321 123222233344455555
Q ss_pred c--ccCCcCcHHHHHHHHHhCcCCCeEEEEecCCCccc
Q 004351 180 E--DCSDWSNATTRRVVMQIDPELKRTIIVSTKLDTKI 215 (759)
Q Consensus 180 ~--~~~D~~~~~~l~lar~~Dp~g~RTIgVlTK~D~~~ 215 (759)
- .+-+..+-+.+.+.|.- ....|..++|+|.+.
T Consensus 572 dImhGlepqtiESi~lLR~r---ktpFivALNKiDRLY 606 (1064)
T KOG1144|consen 572 DIMHGLEPQTIESINLLRMR---KTPFIVALNKIDRLY 606 (1064)
T ss_pred ehhccCCcchhHHHHHHHhc---CCCeEEeehhhhhhc
Confidence 2 23455566667777653 456999999999864
No 330
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=91.84 E-value=0.12 Score=54.15 Aligned_cols=25 Identities=36% Similarity=0.473 Sum_probs=23.7
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
-++++|..|||||+||+-|.|+.=|
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld~p 57 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLDKP 57 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcccCC
Confidence 3889999999999999999999988
No 331
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=91.62 E-value=0.89 Score=53.14 Aligned_cols=25 Identities=32% Similarity=0.425 Sum_probs=22.9
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.+++||+.|||||||++.|+|+--|
T Consensus 363 ~vaIvG~SGsGKSTLl~lL~g~~~p 387 (529)
T TIGR02868 363 RVAILGPSGSGKSTLLMLLTGLLDP 387 (529)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 3799999999999999999999766
No 332
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=91.40 E-value=0.14 Score=54.12 Aligned_cols=26 Identities=27% Similarity=0.424 Sum_probs=23.9
Q ss_pred EEEEeccCCchHHHHHHHhCCcccee
Q 004351 27 VLVVGHQTDGKSALVEALMGFQFNHV 52 (759)
Q Consensus 27 IVVVG~QSsGKSSLLEAL~G~~fp~~ 52 (759)
+.++|..|+||||||+.|.|..-|..
T Consensus 32 vsilGpSGcGKSTLLriiAGL~~p~~ 57 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAGLEKPTS 57 (248)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 78999999999999999999998843
No 333
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=91.31 E-value=0.16 Score=49.18 Aligned_cols=24 Identities=38% Similarity=0.621 Sum_probs=21.2
Q ss_pred CEEEEEeccCCchHHHHHHHhCCc
Q 004351 25 PAVLVVGHQTDGKSALVEALMGFQ 48 (759)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~~ 48 (759)
|.|.|||..+||||||++.|+..=
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l 24 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL 24 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 789999999999999999998763
No 334
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=91.24 E-value=0.15 Score=51.25 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=22.6
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
-++++|..||||||||+.|+|.--|
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~~~ 44 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLLRP 44 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4789999999999999999998654
No 335
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=91.21 E-value=0.15 Score=52.13 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=22.4
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.++++|..|||||||++.|+|..-|
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl~~~ 54 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGALTP 54 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4789999999999999999998655
No 336
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=91.18 E-value=0.18 Score=55.06 Aligned_cols=39 Identities=28% Similarity=0.275 Sum_probs=32.9
Q ss_pred CCCCCCEEEEEeccCCchHHHHHHHhCCccceecCcccc
Q 004351 20 TPFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKT 58 (759)
Q Consensus 20 ~~i~lPqIVVVG~QSsGKSSLLEAL~G~~fp~~g~g~cT 58 (759)
...+.|.|.|||=.++||||||++|++..+-|.+.=..|
T Consensus 174 ~~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFAT 212 (410)
T KOG0410|consen 174 EGESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFAT 212 (410)
T ss_pred ccCCCceEEEEeecCccHHHHHHHHHhhhcCccchhhee
Confidence 567999999999999999999999999998766543333
No 337
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=91.17 E-value=0.15 Score=52.35 Aligned_cols=25 Identities=28% Similarity=0.539 Sum_probs=22.7
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.++++|..||||||||+.|+|.--|
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~~~ 52 (222)
T cd03224 28 IVALLGRNGAGKTTLLKTIMGLLPP 52 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4789999999999999999999755
No 338
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=91.13 E-value=0.16 Score=49.99 Aligned_cols=25 Identities=28% Similarity=0.410 Sum_probs=22.5
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.++++|..++||||||+.|+|..-|
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~~~ 52 (163)
T cd03216 28 VHALLGENGAGKSTLMKILSGLYKP 52 (163)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4679999999999999999999755
No 339
>COG3910 Predicted ATPase [General function prediction only]
Probab=91.12 E-value=0.17 Score=51.49 Aligned_cols=33 Identities=42% Similarity=0.788 Sum_probs=27.6
Q ss_pred CCCCCEEEEEeccCCchHHHHHHHh-CCccceec
Q 004351 21 PFDAPAVLVVGHQTDGKSALVEALM-GFQFNHVG 53 (759)
Q Consensus 21 ~i~lPqIVVVG~QSsGKSSLLEAL~-G~~fp~~g 53 (759)
.+..|--+++|+.++|||+|||||. |..|.+.|
T Consensus 34 eF~apIT~i~GENGsGKSTLLEaiA~~~~~n~aG 67 (233)
T COG3910 34 EFRAPITFITGENGSGKSTLLEAIAAGMGFNAAG 67 (233)
T ss_pred cccCceEEEEcCCCccHHHHHHHHHhhccccccC
Confidence 5677888999999999999999995 56677544
No 340
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=91.11 E-value=0.26 Score=48.38 Aligned_cols=41 Identities=22% Similarity=0.326 Sum_probs=23.8
Q ss_pred HHHHHHHhhhhcCCCCCCCEEEEEeccCCchHHHHHHHhCCc
Q 004351 7 AYNELHGLAQELETPFDAPAVLVVGHQTDGKSALVEALMGFQ 48 (759)
Q Consensus 7 ~~n~L~~l~~~~~~~i~lPqIVVVG~QSsGKSSLLEAL~G~~ 48 (759)
.+++|.++-. ....-+-+-++|+|..|+|||+||+++...-
T Consensus 8 e~~~l~~~l~-~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 8 EIERLRDLLD-AAQSGSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp HHHHHHHTTG-GTSS-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHcCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3455555442 2344455889999999999999999877544
No 341
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=91.07 E-value=0.17 Score=51.55 Aligned_cols=31 Identities=32% Similarity=0.416 Sum_probs=25.3
Q ss_pred EEEEEeccCCchHHHHHHHhCCccceecCcccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFNHVGGGTKT 58 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp~~g~g~cT 58 (759)
.++++|..++|||+||++|+|.--| ..|.++
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~ 66 (207)
T cd03369 36 KIGIVGRTGAGKSTLILALFRFLEA--EEGKIE 66 (207)
T ss_pred EEEEECCCCCCHHHHHHHHhcccCC--CCCeEE
Confidence 4789999999999999999998655 345543
No 342
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=91.04 E-value=0.17 Score=50.17 Aligned_cols=28 Identities=25% Similarity=0.511 Sum_probs=25.2
Q ss_pred CCCEEEEEeccCCchHHHHHHHh---CCccc
Q 004351 23 DAPAVLVVGHQTDGKSALVEALM---GFQFN 50 (759)
Q Consensus 23 ~lPqIVVVG~QSsGKSSLLEAL~---G~~fp 50 (759)
+.|-|+|+|..||||||+.+.|. |+..+
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~ 32 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKYGFTHL 32 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 46899999999999999999999 87765
No 343
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=91.03 E-value=0.18 Score=50.48 Aligned_cols=25 Identities=32% Similarity=0.486 Sum_probs=22.9
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.++++|..++|||||++.|+|..-|
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~~ 52 (182)
T cd03215 28 IVGIAGLVGNGQTELAEALFGLRPP 52 (182)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5799999999999999999999755
No 344
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=91.03 E-value=0.97 Score=51.34 Aligned_cols=65 Identities=20% Similarity=0.174 Sum_probs=39.6
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeeccc--CCcCcHHHHHHHHHhCcCCC-eEEEEec
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDC--SDWSNATTRRVVMQIDPELK-RTIIVST 209 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~--~D~~~~~~l~lar~~Dp~g~-RTIgVlT 209 (759)
.++|||.||.- +.+.+|+.. +.--++-+|+|.+. -++.+-+-+.++ |--|. +-|.|+|
T Consensus 51 ~~~fIDvpgh~---------------~~i~~miag-~~~~d~alLvV~~deGl~~qtgEhL~iL---dllgi~~giivlt 111 (447)
T COG3276 51 VMGFIDVPGHP---------------DFISNLLAG-LGGIDYALLVVAADEGLMAQTGEHLLIL---DLLGIKNGIIVLT 111 (447)
T ss_pred ceEEeeCCCcH---------------HHHHHHHhh-hcCCceEEEEEeCccCcchhhHHHHHHH---HhcCCCceEEEEe
Confidence 79999999992 456677654 22234444444322 244444444444 44454 5599999
Q ss_pred CCCcccc
Q 004351 210 KLDTKIP 216 (759)
Q Consensus 210 K~D~~~~ 216 (759)
|.|...+
T Consensus 112 k~D~~d~ 118 (447)
T COG3276 112 KADRVDE 118 (447)
T ss_pred ccccccH
Confidence 9999743
No 345
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=91.01 E-value=0.16 Score=53.54 Aligned_cols=27 Identities=26% Similarity=0.379 Sum_probs=23.7
Q ss_pred CCCCCEEEEEeccCCchHHHHHHHhCC
Q 004351 21 PFDAPAVLVVGHQTDGKSALVEALMGF 47 (759)
Q Consensus 21 ~i~lPqIVVVG~QSsGKSSLLEAL~G~ 47 (759)
.++.+-.++||+.+||||+||+||.|.
T Consensus 22 ~~~~~~~~IvG~NGsGKStll~Ai~~l 48 (251)
T cd03273 22 GFDPQFNAITGLNGSGKSNILDAICFV 48 (251)
T ss_pred cCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 445677999999999999999999876
No 346
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=90.99 E-value=0.16 Score=51.39 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=22.8
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.++++|..|+|||+|++.|+|..-|
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~~ 52 (195)
T PRK13541 28 ITYIKGANGCGKSSLLRMIAGIMQP 52 (195)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 5789999999999999999998755
No 347
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=90.95 E-value=0.18 Score=52.34 Aligned_cols=31 Identities=32% Similarity=0.433 Sum_probs=26.8
Q ss_pred EEEEEeccCCchHHHHHHHhCCccceecCcccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFNHVGGGTKT 58 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp~~g~g~cT 58 (759)
-++++|..++|||+||.+|+|.--| ++|-||
T Consensus 29 v~ailGPNGAGKSTlLk~LsGel~p--~~G~v~ 59 (259)
T COG4559 29 VLAILGPNGAGKSTLLKALSGELSP--DSGEVT 59 (259)
T ss_pred EEEEECCCCccHHHHHHHhhCccCC--CCCeEe
Confidence 4789999999999999999998877 456665
No 348
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=90.92 E-value=0.18 Score=52.03 Aligned_cols=29 Identities=21% Similarity=0.342 Sum_probs=24.1
Q ss_pred EEEEeccCCchHHHHHHHhCCccceecCccc
Q 004351 27 VLVVGHQTDGKSALVEALMGFQFNHVGGGTK 57 (759)
Q Consensus 27 IVVVG~QSsGKSSLLEAL~G~~fp~~g~g~c 57 (759)
++++|..+|||||||+.|+|.--| .+|..
T Consensus 16 ~~l~G~NGsGKSTLlk~i~Gl~~~--~sG~i 44 (213)
T PRK15177 16 IGILAAPGSGKTTLTRLLCGLDAP--DEGDF 44 (213)
T ss_pred EEEECCCCCCHHHHHHHHhCCccC--CCCCE
Confidence 679999999999999999999755 34544
No 349
>PRK00300 gmk guanylate kinase; Provisional
Probab=90.89 E-value=0.18 Score=51.12 Aligned_cols=22 Identities=36% Similarity=0.534 Sum_probs=20.6
Q ss_pred EEEEEeccCCchHHHHHHHhCC
Q 004351 26 AVLVVGHQTDGKSALVEALMGF 47 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~ 47 (759)
-|+++|..+||||||+..|.+.
T Consensus 7 ~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 7 LIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999999996
No 350
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=90.89 E-value=0.16 Score=52.03 Aligned_cols=25 Identities=32% Similarity=0.646 Sum_probs=22.6
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.++++|..|||||||++.|+|.--|
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~~~ 55 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGIEKP 55 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4789999999999999999998655
No 351
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=90.88 E-value=0.16 Score=52.04 Aligned_cols=25 Identities=24% Similarity=0.317 Sum_probs=22.4
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
-++++|..+||||+|++.|+|.--|
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~~ 54 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGELRP 54 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3789999999999999999998655
No 352
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=90.81 E-value=0.17 Score=51.37 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=22.5
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.++++|..|+||||||+.|+|.--|
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~~~ 50 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLLEKF 50 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4789999999999999999998655
No 353
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=90.81 E-value=2.5 Score=41.81 Aligned_cols=69 Identities=22% Similarity=0.280 Sum_probs=44.5
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHH-HHHhCc----CCCeEEE
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRV-VMQIDP----ELKRTII 206 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~l-ar~~Dp----~g~RTIg 206 (759)
..|.|.||-|+-..+ .+|-+.|.+-++..+|+-... |...-+.+++ -+++|. .--..+.
T Consensus 60 E~l~lyDTaGlq~~~---------------~eLprhy~q~aDafVLVYs~~-d~eSf~rv~llKk~Idk~KdKKEvpiVV 123 (198)
T KOG3883|consen 60 EQLRLYDTAGLQGGQ---------------QELPRHYFQFADAFVLVYSPM-DPESFQRVELLKKEIDKHKDKKEVPIVV 123 (198)
T ss_pred heEEEeecccccCch---------------hhhhHhHhccCceEEEEecCC-CHHHHHHHHHHHHHHhhccccccccEEE
Confidence 357889999995431 157789999999999887644 2333333333 355654 2234566
Q ss_pred EecCCCcccc
Q 004351 207 VSTKLDTKIP 216 (759)
Q Consensus 207 VlTK~D~~~~ 216 (759)
..+|.|+..|
T Consensus 124 LaN~rdr~~p 133 (198)
T KOG3883|consen 124 LANKRDRAEP 133 (198)
T ss_pred Eechhhcccc
Confidence 6799998654
No 354
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.81 E-value=0.18 Score=51.49 Aligned_cols=29 Identities=14% Similarity=0.354 Sum_probs=23.7
Q ss_pred CCCCE-EEEEeccCCchHHHHHHHhCCccc
Q 004351 22 FDAPA-VLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 22 i~lPq-IVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
+.-.+ ++++|..+|||||||..|+|.--|
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~ 52 (210)
T cd03269 23 VEKGEIFGLLGPNGAGKTTTIRMILGIILP 52 (210)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 34344 579999999999999999998644
No 355
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.73 E-value=1.5 Score=43.01 Aligned_cols=116 Identities=22% Similarity=0.226 Sum_probs=77.5
Q ss_pred CCEEEEEeccCCchHHHHHHHhCCccceecCccccccceEEEEeeCCCCCCCceEEecCCCCCCcccccChHHHHHHHHH
Q 004351 24 APAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEIQSFIEA 103 (759)
Q Consensus 24 lPqIVVVG~QSsGKSSLLEAL~G~~fp~~g~g~cTR~P~~l~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~l~~~Ie~ 103 (759)
|-.||.||+-+.||+-|+.-++.-=||| |.|..- .+-++.
T Consensus 7 lfkivlvgnagvgktclvrrftqglfpp-gqgati-----------------gvdfmi---------------------- 46 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGLFPP-GQGATI-----------------GVDFMI---------------------- 46 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccCCCC-CCCcee-----------------eeeEEE----------------------
Confidence 5689999999999999999999988996 322110 000100
Q ss_pred HHhhhhhccCCCccccceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEee-ccc
Q 004351 104 ENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCL-EDC 182 (759)
Q Consensus 104 ~~~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V-~~~ 182 (759)
-.++|.+. -..|.|-||.|- +..+++..+|-+..+++||+- +.|
T Consensus 47 ------------------ktvev~ge-kiklqiwdtagq----------------erfrsitqsyyrsahalilvydisc 91 (213)
T KOG0095|consen 47 ------------------KTVEVNGE-KIKLQIWDTAGQ----------------ERFRSITQSYYRSAHALILVYDISC 91 (213)
T ss_pred ------------------EEEEECCe-EEEEEEeeccch----------------HHHHHHHHHHhhhcceEEEEEeccc
Confidence 01222211 124556777664 457799999999999999985 233
Q ss_pred --CCcCcHHHHHHHHHhCcCCCeEEEEecCCCcc
Q 004351 183 --SDWSNATTRRVVMQIDPELKRTIIVSTKLDTK 214 (759)
Q Consensus 183 --~D~~~~~~l~lar~~Dp~g~RTIgVlTK~D~~ 214 (759)
+=-+-.+|++-+.++-...-=+|.|-+|.|+.
T Consensus 92 qpsfdclpewlreie~yan~kvlkilvgnk~d~~ 125 (213)
T KOG0095|consen 92 QPSFDCLPEWLREIEQYANNKVLKILVGNKIDLA 125 (213)
T ss_pred CcchhhhHHHHHHHHHHhhcceEEEeeccccchh
Confidence 22244567777777766656688999999984
No 356
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=90.72 E-value=0.17 Score=51.77 Aligned_cols=24 Identities=21% Similarity=0.302 Sum_probs=21.9
Q ss_pred EEEEeccCCchHHHHHHHhCCccc
Q 004351 27 VLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 27 IVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
++++|..++||||||+.|+|.--|
T Consensus 34 ~~i~G~nGsGKSTLl~~l~Gl~~~ 57 (218)
T cd03266 34 TGLLGPNGAGKTTTLRMLAGLLEP 57 (218)
T ss_pred EEEECCCCCCHHHHHHHHhCCcCC
Confidence 679999999999999999998655
No 357
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=90.70 E-value=0.18 Score=51.41 Aligned_cols=25 Identities=40% Similarity=0.501 Sum_probs=22.2
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.++++|..||||||||+.|+|.--|
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~~~ 53 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGLLGP 53 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 3789999999999999999998644
No 358
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=90.70 E-value=0.18 Score=51.26 Aligned_cols=25 Identities=24% Similarity=0.446 Sum_probs=22.6
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.++++|..+|||||||+.|+|.--|
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~~p 52 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGLIKE 52 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4789999999999999999998655
No 359
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=90.69 E-value=0.19 Score=48.64 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=21.6
Q ss_pred EEEEeccCCchHHHHHHHhCCccc
Q 004351 27 VLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 27 IVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
++++|..++|||+|++.|+|.--|
T Consensus 29 ~~i~G~nGsGKStLl~~l~G~~~~ 52 (144)
T cd03221 29 IGLVGRNGAGKSTLLKLIAGELEP 52 (144)
T ss_pred EEEECCCCCCHHHHHHHHcCCCCC
Confidence 569999999999999999998644
No 360
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=90.69 E-value=0.17 Score=51.03 Aligned_cols=25 Identities=28% Similarity=0.411 Sum_probs=22.7
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.++++|..+||||||++.|+|.--|
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~~p 51 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQLIP 51 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCCCC
Confidence 4789999999999999999998755
No 361
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.68 E-value=0.18 Score=51.84 Aligned_cols=25 Identities=32% Similarity=0.438 Sum_probs=22.4
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.++++|..|||||||++.|+|..-|
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl~~~ 56 (220)
T cd03293 32 FVALVGPSGCGKSTLLRIIAGLERP 56 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3789999999999999999998655
No 362
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=90.60 E-value=0.47 Score=45.94 Aligned_cols=25 Identities=40% Similarity=0.469 Sum_probs=22.2
Q ss_pred CCEEEEEeccCCchHHHHHHHhCCc
Q 004351 24 APAVLVVGHQTDGKSALVEALMGFQ 48 (759)
Q Consensus 24 lPqIVVVG~QSsGKSSLLEAL~G~~ 48 (759)
...++++|.+++||||++++|.|..
T Consensus 101 ~~~~~~ig~~~~Gkssl~~~l~~~~ 125 (156)
T cd01859 101 EGKVGVVGYPNVGKSSIINALKGRH 125 (156)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578999999999999999998754
No 363
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=90.59 E-value=0.18 Score=51.64 Aligned_cols=25 Identities=36% Similarity=0.480 Sum_probs=22.4
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.++++|..||||||||.+|+|.--|
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl~~~ 56 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLDRP 56 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCcCC
Confidence 4789999999999999999998544
No 364
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=90.58 E-value=0.16 Score=49.72 Aligned_cols=22 Identities=32% Similarity=0.599 Sum_probs=17.9
Q ss_pred EEEEEeccCCchHHHHHHHhCC
Q 004351 26 AVLVVGHQTDGKSALVEALMGF 47 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~ 47 (759)
+||++|..|+|||||+++|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 5899999999999999999966
No 365
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=90.55 E-value=0.18 Score=52.13 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=22.4
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.++++|..||||||||+.|+|.--|
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~~p 52 (232)
T cd03218 28 IVGLLGPNGAGKTTTFYMIVGLVKP 52 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4789999999999999999998644
No 366
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=90.54 E-value=0.65 Score=50.60 Aligned_cols=30 Identities=33% Similarity=0.407 Sum_probs=25.2
Q ss_pred CCCCCEEEEEeccCCchHHHHHHHhCCccc
Q 004351 21 PFDAPAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 21 ~i~lPqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.-.-+.+-|||-.+.|||||+||+-...+-
T Consensus 140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lr 169 (335)
T KOG2485|consen 140 LNSEYNVMVVGVPNVGKSSLINALRNVHLR 169 (335)
T ss_pred cCCceeEEEEcCCCCChHHHHHHHHHHHhh
Confidence 345689999999999999999998776653
No 367
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.51 E-value=0.19 Score=52.24 Aligned_cols=25 Identities=24% Similarity=0.481 Sum_probs=22.6
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.++++|..||||||||+.|+|.--|
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~p 52 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGLLRP 52 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4889999999999999999998655
No 368
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=90.48 E-value=0.19 Score=50.93 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=22.8
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.++++|..++|||+|++.|+|.--|
T Consensus 29 ~~~l~G~nGsGKSTLl~~i~G~~~~ 53 (200)
T PRK13540 29 LLHLKGSNGAGKTTLLKLIAGLLNP 53 (200)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4789999999999999999998755
No 369
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.45 E-value=0.19 Score=52.26 Aligned_cols=25 Identities=32% Similarity=0.434 Sum_probs=22.6
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
-++++|..|||||||++.|+|.--|
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~~~ 53 (241)
T cd03256 29 FVALIGPSGAGKSTLLRCLNGLVEP 53 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCC
Confidence 4789999999999999999998655
No 370
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=90.41 E-value=0.18 Score=52.50 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=22.5
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
-++++|..||||||||++|+|.--|
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl~~~ 54 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLRCINRLVEP 54 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCC
Confidence 4789999999999999999998644
No 371
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=90.39 E-value=0.22 Score=51.79 Aligned_cols=30 Identities=33% Similarity=0.354 Sum_probs=24.6
Q ss_pred EEEEEeccCCchHHHHHHHhCCccceecCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFNHVGGGTK 57 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp~~g~g~c 57 (759)
.+.++|..+||||||+++|+|.--| .+|.+
T Consensus 31 ~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i 60 (238)
T cd03249 31 TVALVGSSGCGKSTVVSLLERFYDP--TSGEI 60 (238)
T ss_pred EEEEEeCCCCCHHHHHHHHhccCCC--CCCEE
Confidence 4799999999999999999998644 24544
No 372
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=90.35 E-value=0.2 Score=51.50 Aligned_cols=25 Identities=36% Similarity=0.501 Sum_probs=22.5
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.++++|..+|||||||..|+|.--|
T Consensus 33 ~~~i~G~nGsGKSTLl~~i~G~~~~ 57 (221)
T TIGR02211 33 IVAIVGSSGSGKSTLLHLLGGLDNP 57 (221)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5789999999999999999998655
No 373
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=90.33 E-value=0.13 Score=52.39 Aligned_cols=27 Identities=26% Similarity=0.409 Sum_probs=22.7
Q ss_pred CCCCEEEEEeccCCchHHHHHHHhCCc
Q 004351 22 FDAPAVLVVGHQTDGKSALVEALMGFQ 48 (759)
Q Consensus 22 i~lPqIVVVG~QSsGKSSLLEAL~G~~ 48 (759)
+.-.-++++|..++|||+|+++|.|.-
T Consensus 20 ~~~g~~~i~G~nGsGKStll~al~~l~ 46 (197)
T cd03278 20 FPPGLTAIVGPNGSGKSNIIDAIRWVL 46 (197)
T ss_pred cCCCcEEEECCCCCCHHHHHHHHHHHh
Confidence 333468999999999999999998773
No 374
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=90.31 E-value=0.2 Score=51.46 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=23.1
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.++++|..++|||+||+.|.|..-|
T Consensus 29 ~~~i~G~nGsGKSTLl~~i~G~~~~ 53 (218)
T cd03290 29 LTMIVGQVGCGKSSLLLAILGEMQT 53 (218)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCC
Confidence 5899999999999999999999755
No 375
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.29 E-value=0.21 Score=51.11 Aligned_cols=25 Identities=20% Similarity=0.381 Sum_probs=22.3
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.++++|..|||||||+..|+|.--|
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~p 52 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGLERP 52 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3789999999999999999998644
No 376
>PRK14738 gmk guanylate kinase; Provisional
Probab=90.28 E-value=0.3 Score=50.16 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=19.3
Q ss_pred EEEEEeccCCchHHHHHHHhCC
Q 004351 26 AVLVVGHQTDGKSALVEALMGF 47 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~ 47 (759)
-||++|..|+|||||+++|...
T Consensus 15 ~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 15 LVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred EEEEECcCCCCHHHHHHHHHhc
Confidence 4678899999999999999854
No 377
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=90.27 E-value=0.2 Score=52.01 Aligned_cols=25 Identities=32% Similarity=0.490 Sum_probs=22.3
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
-++++|..||||||||+.|+|.--|
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~Gl~~~ 61 (233)
T PRK11629 37 MMAIVGSSGSGKSTLLHLLGGLDTP 61 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4789999999999999999998644
No 378
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.26 E-value=0.22 Score=50.29 Aligned_cols=23 Identities=26% Similarity=0.515 Sum_probs=21.2
Q ss_pred EEEEEeccCCchHHHHHHHhCCc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQ 48 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~ 48 (759)
.++++|..++||||||..|.|..
T Consensus 35 ~~~l~G~nGsGKSTLl~~l~G~~ 57 (192)
T cd03232 35 LTALMGESGAGKTTLLDVLAGRK 57 (192)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46899999999999999999975
No 379
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.24 E-value=0.23 Score=48.21 Aligned_cols=25 Identities=36% Similarity=0.511 Sum_probs=22.5
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.++++|..++|||+|+++|+|.--|
T Consensus 27 ~~~i~G~nGsGKStll~~l~g~~~~ 51 (157)
T cd00267 27 IVALVGPNGSGKSTLLRAIAGLLKP 51 (157)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5789999999999999999998644
No 380
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=90.22 E-value=0.21 Score=52.20 Aligned_cols=25 Identities=24% Similarity=0.445 Sum_probs=22.5
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.++++|..|+|||||++.|+|..-|
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~~~ 54 (242)
T PRK11124 30 TLVLLGPSGAGKSSLLRVLNLLEMP 54 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4789999999999999999998755
No 381
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=90.20 E-value=0.22 Score=50.42 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=22.5
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.++++|..+||||+|++.|+|.--|
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~~ 52 (198)
T TIGR01189 28 ALQVTGPNGIGKTTLLRILAGLLRP 52 (198)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4789999999999999999998655
No 382
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=90.13 E-value=0.22 Score=50.14 Aligned_cols=23 Identities=35% Similarity=0.680 Sum_probs=21.3
Q ss_pred EEEEEeccCCchHHHHHHHhCCc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQ 48 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~ 48 (759)
-++++|..+|||||++++|+|.-
T Consensus 27 ~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 27 NILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 48999999999999999999974
No 383
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=90.09 E-value=0.22 Score=50.84 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=22.1
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.++++|..||||||||..|+|.--|
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~~ 53 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKEELP 53 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 3679999999999999999998544
No 384
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.06 E-value=0.23 Score=49.28 Aligned_cols=25 Identities=20% Similarity=0.400 Sum_probs=22.4
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.++++|..++|||+|+..|+|.--|
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~~~ 52 (173)
T cd03230 28 IYGLLGPNGAGKTTLIKIILGLLKP 52 (173)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4789999999999999999998644
No 385
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.06 E-value=0.22 Score=51.21 Aligned_cols=24 Identities=17% Similarity=0.235 Sum_probs=21.6
Q ss_pred EEEEeccCCchHHHHHHHhCCccc
Q 004351 27 VLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 27 IVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
++++|..|||||||++.|+|.--|
T Consensus 29 ~~i~G~nGsGKSTLl~~i~G~~~~ 52 (220)
T cd03265 29 FGLLGPNGAGKTTTIKMLTTLLKP 52 (220)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC
Confidence 679999999999999999998544
No 386
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=90.04 E-value=0.22 Score=51.31 Aligned_cols=25 Identities=32% Similarity=0.503 Sum_probs=22.8
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.++++|..+|||||||+.|+|.--|
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G~~~~ 57 (228)
T cd03257 33 TLGLVGESGSGKSTLARAILGLLKP 57 (228)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5899999999999999999998645
No 387
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=89.97 E-value=0.25 Score=50.49 Aligned_cols=25 Identities=24% Similarity=0.464 Sum_probs=22.5
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.++++|..++|||||++.|+|..-|
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~~~ 54 (207)
T PRK13539 30 ALVLTGPNGSGKTTLLRLIAGLLPP 54 (207)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4679999999999999999998755
No 388
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=89.96 E-value=0.22 Score=49.39 Aligned_cols=25 Identities=24% Similarity=0.499 Sum_probs=22.5
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.++++|..++||||||..|+|.--|
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~~~ 54 (173)
T cd03246 30 SLAIIGPSGSGKSTLARLILGLLRP 54 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCC
Confidence 4789999999999999999998644
No 389
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=89.94 E-value=0.22 Score=51.57 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=22.3
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
-++++|..+|||||||+.|+|.--|
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~G~~~~ 59 (225)
T PRK10247 35 FKLITGPSGCGKSTLLKIVASLISP 59 (225)
T ss_pred EEEEECCCCCCHHHHHHHHhcccCC
Confidence 4789999999999999999998644
No 390
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.93 E-value=0.22 Score=50.79 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=22.5
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.++++|..|+||||||+.|.|.-=|
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~~~ 51 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLTPP 51 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCCCC
Confidence 7899999999999999999998534
No 391
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=89.92 E-value=0.25 Score=50.67 Aligned_cols=31 Identities=29% Similarity=0.452 Sum_probs=24.8
Q ss_pred EEEEEeccCCchHHHHHHHhCCccceecCcccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFNHVGGGTKT 58 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp~~g~g~cT 58 (759)
-+.++|..+||||+||..|+|.--| ..|.++
T Consensus 32 ~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~ 62 (220)
T cd03245 32 KVAIIGRVGSGKSTLLKLLAGLYKP--TSGSVL 62 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhcCcCC--CCCeEE
Confidence 3779999999999999999998644 245443
No 392
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=89.83 E-value=0.23 Score=50.57 Aligned_cols=25 Identities=24% Similarity=0.414 Sum_probs=22.5
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.++++|..|||||+||..|+|.--|
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~~ 52 (213)
T cd03262 28 VVVIIGPSGSGKSTLLRCINLLEEP 52 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4789999999999999999998644
No 393
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=89.74 E-value=0.24 Score=50.33 Aligned_cols=23 Identities=30% Similarity=0.549 Sum_probs=21.4
Q ss_pred EEEEEeccCCchHHHHHHHhCCc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQ 48 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~ 48 (759)
.++++|..++|||+|++.|+|..
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (200)
T cd03217 28 VHALMGPNGSGKSTLAKTIMGHP 50 (200)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999985
No 394
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=89.73 E-value=0.24 Score=50.57 Aligned_cols=25 Identities=32% Similarity=0.534 Sum_probs=22.6
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.++++|..+|||||||+.|+|.--|
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~G~~~p 51 (213)
T cd03235 27 FLAIVGPNGAGKSTLLKAILGLLKP 51 (213)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCC
Confidence 4789999999999999999998655
No 395
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.71 E-value=0.23 Score=51.21 Aligned_cols=25 Identities=36% Similarity=0.525 Sum_probs=22.3
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.+.++|..++||||||++|+|.--|
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~~~ 55 (229)
T cd03254 31 TVAIVGPTGAGKTTLINLLMRFYDP 55 (229)
T ss_pred EEEEECCCCCCHHHHHHHHhcCcCC
Confidence 3789999999999999999998644
No 396
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.68 E-value=0.24 Score=50.66 Aligned_cols=26 Identities=23% Similarity=0.392 Sum_probs=23.0
Q ss_pred CEEEEEeccCCchHHHHHHHhCCccc
Q 004351 25 PAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
-.++++|..|+||||||+.|+|.--|
T Consensus 24 e~~~i~G~nGsGKSTLl~~l~G~~~~ 49 (214)
T cd03297 24 EVTGIFGASGAGKSTLLRCIAGLEKP 49 (214)
T ss_pred eeEEEECCCCCCHHHHHHHHhCCCCC
Confidence 45789999999999999999998644
No 397
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.66 E-value=0.25 Score=51.32 Aligned_cols=25 Identities=32% Similarity=0.441 Sum_probs=22.5
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.++++|..+||||+||+.|.|..-|
T Consensus 29 ~~~l~G~nGsGKSTLl~~i~Gl~~~ 53 (236)
T cd03253 29 KVAIVGPSGSGKSTILRLLFRFYDV 53 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhcccCC
Confidence 4689999999999999999998755
No 398
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=89.65 E-value=0.23 Score=50.93 Aligned_cols=28 Identities=32% Similarity=0.519 Sum_probs=25.1
Q ss_pred EEEEEeccCCchHHHHHHHhCCccceec
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFNHVG 53 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp~~g 53 (759)
-+||+|..++|||||||-+.|+-=|.+|
T Consensus 33 ~vv~lGpSGcGKTTLLnl~AGf~~P~~G 60 (259)
T COG4525 33 LVVVLGPSGCGKTTLLNLIAGFVTPSRG 60 (259)
T ss_pred EEEEEcCCCccHHHHHHHHhcCcCcccc
Confidence 5899999999999999999999988554
No 399
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.61 E-value=0.27 Score=50.97 Aligned_cols=25 Identities=36% Similarity=0.412 Sum_probs=22.7
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
-+.++|..+||||||++.|+|.--|
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~p 54 (234)
T cd03251 30 TVALVGPSGSGKSTLVNLIPRFYDV 54 (234)
T ss_pred EEEEECCCCCCHHHHHHHHhccccC
Confidence 4789999999999999999999755
No 400
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.60 E-value=0.26 Score=51.20 Aligned_cols=31 Identities=23% Similarity=0.379 Sum_probs=25.5
Q ss_pred EEEEEeccCCchHHHHHHHhCCccceecCcccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFNHVGGGTKT 58 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp~~g~g~cT 58 (759)
.++++|..++|||+|++.|.|.--| ..|.++
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~g~~~~--~~G~i~ 58 (232)
T cd03300 28 FFTLLGPSGCGKTTLLRLIAGFETP--TSGEIL 58 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC--CceEEE
Confidence 5889999999999999999999865 235443
No 401
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=89.60 E-value=0.24 Score=51.20 Aligned_cols=25 Identities=32% Similarity=0.488 Sum_probs=22.8
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.++++|..|||||+||..|+|.--|
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~~ 52 (230)
T TIGR03410 28 VTCVLGRNGVGKTTLLKTLMGLLPV 52 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4899999999999999999998755
No 402
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=89.59 E-value=0.25 Score=51.39 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=21.4
Q ss_pred EEEEEeccCCchHHHHHHHhCCc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQ 48 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~ 48 (759)
.++++|..||||||||+.|+|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (243)
T TIGR01978 28 IHAIMGPNGSGKSTLSKTIAGHP 50 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999984
No 403
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=89.55 E-value=0.25 Score=51.42 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=22.3
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.++++|..+||||||+..|+|.--|
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~p 53 (236)
T TIGR03864 29 FVALLGPNGAGKSTLFSLLTRLYVA 53 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCC
Confidence 4679999999999999999998645
No 404
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=89.54 E-value=0.26 Score=50.20 Aligned_cols=25 Identities=16% Similarity=0.283 Sum_probs=22.2
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.++++|..++||||||+.|+|.--|
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~~~ 52 (208)
T cd03268 28 IYGFLGPNGAGKTTTMKIILGLIKP 52 (208)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCC
Confidence 3789999999999999999998644
No 405
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=89.53 E-value=0.23 Score=51.31 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=21.4
Q ss_pred EEEEEeccCCchHHHHHHHhCCc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQ 48 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~ 48 (759)
-++++|..|||||||++.|+|.-
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 28 ITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 47899999999999999999986
No 406
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.53 E-value=4.6 Score=41.24 Aligned_cols=119 Identities=18% Similarity=0.166 Sum_probs=75.5
Q ss_pred CCCEEEEEeccCCchHHHHHHHhCCccceecCccccccceEEEEeeCCCCCCCceEEecCCCCCCcccccChHHHHHHHH
Q 004351 23 DAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEIQSFIE 102 (759)
Q Consensus 23 ~lPqIVVVG~QSsGKSSLLEAL~G~~fp~~g~g~cTR~P~~l~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~l~~~Ie 102 (759)
.+-..+++||-+.|||+||--.+.-+|-|+-. +. +-+-.+ .+.
T Consensus 5 ~~fKyIiiGd~gVGKSclllrf~~krF~~~hd-------~T-------------iGvefg------~r~----------- 47 (216)
T KOG0098|consen 5 YLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHD-------LT-------------IGVEFG------ARM----------- 47 (216)
T ss_pred ceEEEEEECCCCccHHHHHHHHhccCcccccc-------ce-------------eeeeec------eeE-----------
Confidence 44578999999999999999999999865411 11 111110 010
Q ss_pred HHHhhhhhccCCCccccceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEee-cc
Q 004351 103 AENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCL-ED 181 (759)
Q Consensus 103 ~~~~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V-~~ 181 (759)
-.+..++|.|. |-||-|- +..++++.+|-+.....||+- +.
T Consensus 48 ------------~~id~k~IKlq----------iwDtaGq----------------e~frsv~~syYr~a~GalLVydit 89 (216)
T KOG0098|consen 48 ------------VTIDGKQIKLQ----------IWDTAGQ----------------ESFRSVTRSYYRGAAGALLVYDIT 89 (216)
T ss_pred ------------EEEcCceEEEE----------EEecCCc----------------HHHHHHHHHHhccCcceEEEEEcc
Confidence 01233445444 4677665 346789999999998888875 22
Q ss_pred cCC--cCcHHHHHHHHHhCcCCCeEEEEecCCCcccc
Q 004351 182 CSD--WSNATTRRVVMQIDPELKRTIIVSTKLDTKIP 216 (759)
Q Consensus 182 ~~D--~~~~~~l~lar~~Dp~g~RTIgVlTK~D~~~~ 216 (759)
..+ ..-..++.=+++.--..--.+.+-+|.|+...
T Consensus 90 ~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~r 126 (216)
T KOG0098|consen 90 RRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEAR 126 (216)
T ss_pred chhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhcc
Confidence 221 12344677777774445667788899999643
No 407
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=89.52 E-value=0.25 Score=49.14 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=22.2
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.++++|..++|||+|++.|+|.--|
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~~~ 54 (178)
T cd03247 30 KIALLGRSGSGKSTLLQLLTGDLKP 54 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCC
Confidence 3679999999999999999998644
No 408
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=89.52 E-value=0.25 Score=50.13 Aligned_cols=25 Identities=40% Similarity=0.497 Sum_probs=22.5
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
-++++|..++|||||++.|+|..-|
T Consensus 33 ~~~i~G~nG~GKSTLl~~i~G~~~~ 57 (204)
T cd03250 33 LVAIVGPVGSGKSSLLSALLGELEK 57 (204)
T ss_pred EEEEECCCCCCHHHHHHHHhCcCCC
Confidence 4789999999999999999998655
No 409
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=89.52 E-value=0.25 Score=51.08 Aligned_cols=25 Identities=28% Similarity=0.538 Sum_probs=22.6
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
-++++|..|+|||||++.|+|.--|
T Consensus 38 ~~~i~G~nGsGKSTLl~~i~Gl~~p 62 (228)
T PRK10584 38 TIALIGESGSGKSTLLAILAGLDDG 62 (228)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC
Confidence 5899999999999999999998644
No 410
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=89.47 E-value=2.4 Score=44.68 Aligned_cols=25 Identities=16% Similarity=0.337 Sum_probs=20.2
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.|+.+|..+|||||..+-|.+---|
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p 25 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSP 25 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---G
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCc
Confidence 4899999999999999999876555
No 411
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=89.45 E-value=0.28 Score=51.32 Aligned_cols=31 Identities=23% Similarity=0.264 Sum_probs=24.8
Q ss_pred EEEEEeccCCchHHHHHHHhCCccceecCcccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFNHVGGGTKT 58 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp~~g~g~cT 58 (759)
.++++|..+||||+|+..|+|.--| ..|.++
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~ 61 (241)
T PRK14250 31 IYTIVGPSGAGKSTLIKLINRLIDP--TEGSIL 61 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC--CCcEEE
Confidence 4789999999999999999998544 345443
No 412
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.45 E-value=0.26 Score=51.08 Aligned_cols=25 Identities=24% Similarity=0.461 Sum_probs=22.6
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.++++|..|||||||+..|+|.--|
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~G~~~~ 57 (233)
T cd03258 33 IFGIIGRSGAGKSTLIRCINGLERP 57 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5789999999999999999998644
No 413
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=89.42 E-value=0.25 Score=51.26 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=22.2
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.++++|..||||||||..|+|.--|
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~~~ 52 (236)
T cd03219 28 IHGLIGPNGAGKTTLFNLISGFLRP 52 (236)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCC
Confidence 4789999999999999999998544
No 414
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=89.39 E-value=0.27 Score=50.18 Aligned_cols=25 Identities=20% Similarity=0.369 Sum_probs=22.3
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.+.++|..+|||||||..|+|.--|
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~~ 52 (213)
T cd03301 28 FVVLLGPSGCGKTTTLRMIAGLEEP 52 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4679999999999999999998645
No 415
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=89.33 E-value=0.28 Score=48.46 Aligned_cols=25 Identities=36% Similarity=0.464 Sum_probs=22.5
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.++++|..+||||||++.|+|.--|
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~~ 53 (166)
T cd03223 29 RLLITGPSGTGKSSLFRALAGLWPW 53 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4799999999999999999998644
No 416
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=89.32 E-value=0.29 Score=51.03 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=22.4
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.++++|..++|||+||+.|.|.--|
T Consensus 31 ~~~l~G~nGsGKSTLl~~l~G~~~~ 55 (241)
T PRK10895 31 IVGLLGPNGAGKTTTFYMVVGIVPR 55 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4789999999999999999998644
No 417
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=89.32 E-value=0.27 Score=51.95 Aligned_cols=25 Identities=20% Similarity=0.357 Sum_probs=22.7
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.++++|..++||||||..|+|.--|
T Consensus 27 ~~~i~G~NGsGKSTLlk~L~G~~~p 51 (246)
T cd03237 27 VIGILGPNGIGKTTFIKMLAGVLKP 51 (246)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcC
Confidence 4789999999999999999998755
No 418
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=89.30 E-value=0.27 Score=51.14 Aligned_cols=25 Identities=28% Similarity=0.488 Sum_probs=22.7
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
-++++|..|||||||++.|+|.--|
T Consensus 13 ~~~i~G~nGsGKSTLl~~l~Gl~~p 37 (230)
T TIGR01184 13 FISLIGHSGCGKSTLLNLISGLAQP 37 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4799999999999999999999655
No 419
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=89.30 E-value=0.28 Score=52.99 Aligned_cols=25 Identities=32% Similarity=0.509 Sum_probs=23.0
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.++++|..+||||+|++.|.|.--|
T Consensus 34 ~v~i~G~nGsGKSTLl~~l~Gl~~p 58 (288)
T PRK13643 34 YTALIGHTGSGKSTLLQHLNGLLQP 58 (288)
T ss_pred EEEEECCCCChHHHHHHHHhcCCCC
Confidence 4899999999999999999998766
No 420
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=89.25 E-value=0.28 Score=49.89 Aligned_cols=25 Identities=28% Similarity=0.428 Sum_probs=22.8
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.++++|..+||||+|++.|+|.--|
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~~p 53 (204)
T PRK13538 29 LVQIEGPNGAGKTSLLRILAGLARP 53 (204)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5789999999999999999998655
No 421
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=89.25 E-value=0.28 Score=51.45 Aligned_cols=23 Identities=17% Similarity=0.335 Sum_probs=21.4
Q ss_pred EEEEEeccCCchHHHHHHHhCCc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQ 48 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~ 48 (759)
.+.++|..|||||||++.|.|..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (246)
T PRK14269 30 ITALIGASGCGKSTFLRCFNRMN 52 (246)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 57899999999999999999984
No 422
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=89.25 E-value=0.27 Score=49.94 Aligned_cols=25 Identities=32% Similarity=0.485 Sum_probs=22.4
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.+.++|..++|||||++.|+|.--|
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~~ 52 (201)
T cd03231 28 ALQVTGPNGSGKTTLLRILAGLSPP 52 (201)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4789999999999999999998644
No 423
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=89.22 E-value=0.27 Score=52.69 Aligned_cols=25 Identities=28% Similarity=0.535 Sum_probs=22.5
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.++++|..||||||||+.|+|.--|
T Consensus 35 ~~~l~G~nGsGKSTLl~~i~Gl~~p 59 (280)
T PRK13649 35 YTAFIGHTGSGKSTIMQLLNGLHVP 59 (280)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4679999999999999999998655
No 424
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.20 E-value=0.29 Score=48.77 Aligned_cols=25 Identities=28% Similarity=0.494 Sum_probs=21.9
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.+.++|..++|||+|+.+|+|.--|
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~~ 52 (178)
T cd03229 28 IVALLGPSGSGKSTLLRCIAGLEEP 52 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4679999999999999999998533
No 425
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=89.16 E-value=0.33 Score=49.81 Aligned_cols=30 Identities=37% Similarity=0.555 Sum_probs=25.3
Q ss_pred CCCCCEEEEEeccCCchHHHHHHHh----CCccc
Q 004351 21 PFDAPAVLVVGHQTDGKSALVEALM----GFQFN 50 (759)
Q Consensus 21 ~i~lPqIVVVG~QSsGKSSLLEAL~----G~~fp 50 (759)
.++-+-++++|+.++||||||+||. |..+|
T Consensus 19 ~~~~g~~~i~G~NGsGKTTLl~ai~~~l~G~~~~ 52 (204)
T cd03240 19 EFFSPLTLIVGQNGAGKTTIIEALKYALTGELPP 52 (204)
T ss_pred ecCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCc
Confidence 3555688999999999999999994 88765
No 426
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=89.09 E-value=0.28 Score=52.02 Aligned_cols=25 Identities=28% Similarity=0.473 Sum_probs=22.4
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.++++|..||||||||+.|+|.--|
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~~p 53 (255)
T PRK11248 29 LLVVLGPSGCGKTTLLNLIAGFVPY 53 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3789999999999999999998644
No 427
>COG1162 Predicted GTPases [General function prediction only]
Probab=89.00 E-value=0.22 Score=54.14 Aligned_cols=21 Identities=33% Similarity=0.585 Sum_probs=19.7
Q ss_pred EEEEEeccCCchHHHHHHHhC
Q 004351 26 AVLVVGHQTDGKSALVEALMG 46 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G 46 (759)
..|++|..|.|||||||+|.+
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p 186 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLP 186 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCc
Confidence 578999999999999999998
No 428
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.99 E-value=0.64 Score=51.98 Aligned_cols=71 Identities=17% Similarity=0.228 Sum_probs=42.7
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHH--HHHhcCccceeEeecccCCcCcHHHHHHHHHhCcCCCeEEEEec
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLV--RAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVST 209 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv--~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~RTIgVlT 209 (759)
-++.||||-|-.+.. .+..++|. .+.+ +|+.||+++-++ .-|.+...|+.+.-.-.=+-.++|
T Consensus 184 fdvIIvDTSGRh~qe-----------~sLfeEM~~v~~ai-~Pd~vi~VmDas---iGQaae~Qa~aFk~~vdvg~vIlT 248 (483)
T KOG0780|consen 184 FDVIIVDTSGRHKQE-----------ASLFEEMKQVSKAI-KPDEIIFVMDAS---IGQAAEAQARAFKETVDVGAVILT 248 (483)
T ss_pred CcEEEEeCCCchhhh-----------HHHHHHHHHHHhhc-CCCeEEEEEecc---ccHhHHHHHHHHHHhhccceEEEE
Confidence 478999999975521 23444442 3344 466666655433 234455556555544455778999
Q ss_pred CCCccccc
Q 004351 210 KLDTKIPQ 217 (759)
Q Consensus 210 K~D~~~~~ 217 (759)
|.|--..+
T Consensus 249 KlDGhakG 256 (483)
T KOG0780|consen 249 KLDGHAKG 256 (483)
T ss_pred ecccCCCC
Confidence 99976444
No 429
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=88.97 E-value=0.29 Score=51.02 Aligned_cols=25 Identities=24% Similarity=0.466 Sum_probs=22.2
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.+.++|..|||||||+..|+|.--|
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~~ 54 (239)
T cd03296 30 LVALLGPSGSGKTTLLRLIAGLERP 54 (239)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3679999999999999999998655
No 430
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=88.97 E-value=0.3 Score=50.38 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=22.2
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.++++|..++||||||+.|+|.--|
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~~ 52 (223)
T TIGR03740 28 VYGLLGPNGAGKSTLLKMITGILRP 52 (223)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4789999999999999999998544
No 431
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=88.97 E-value=0.31 Score=51.49 Aligned_cols=30 Identities=17% Similarity=0.346 Sum_probs=24.3
Q ss_pred EEEEeccCCchHHHHHHHhCCccceecCcccc
Q 004351 27 VLVVGHQTDGKSALVEALMGFQFNHVGGGTKT 58 (759)
Q Consensus 27 IVVVG~QSsGKSSLLEAL~G~~fp~~g~g~cT 58 (759)
+.++|..++|||||++.|.|.--| ..|.++
T Consensus 34 ~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~ 63 (257)
T PRK10619 34 ISIIGSSGSGKSTFLRCINFLEKP--SEGSIV 63 (257)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC--CCeEEE
Confidence 569999999999999999998655 235443
No 432
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=88.96 E-value=0.34 Score=48.84 Aligned_cols=31 Identities=29% Similarity=0.438 Sum_probs=25.9
Q ss_pred EEEEEeccCCchHHHHHHHhCCccceecCcccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFNHVGGGTKT 58 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp~~g~g~cT 58 (759)
-+.+||+.+||||+||++|+|.=.| +.|+.|
T Consensus 34 VLgiVGESGSGKtTLL~~is~rl~p--~~G~v~ 64 (258)
T COG4107 34 VLGIVGESGSGKTTLLKCISGRLTP--DAGTVT 64 (258)
T ss_pred EEEEEecCCCcHHhHHHHHhcccCC--CCCeEE
Confidence 5789999999999999999998766 355554
No 433
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=88.95 E-value=1.6 Score=51.85 Aligned_cols=141 Identities=18% Similarity=0.239 Sum_probs=78.1
Q ss_pred CCCCCEEEEEeccCCchHHHHHHHhCCccceecCccccccceEEEEeeCCCCCCCceEEecCCCCCCcccccChHHHHHH
Q 004351 21 PFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEIQSF 100 (759)
Q Consensus 21 ~i~lPqIVVVG~QSsGKSSLLEAL~G~~fp~~g~g~cTR~P~~l~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~l~~~ 100 (759)
+-.+-.+.++|.-.+|||+|+.-|++..-| . ++.+.+..|++.+..-
T Consensus 125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp-~-----~~~~~e~~lrytD~l~--------------------------- 171 (971)
T KOG0468|consen 125 PERIRNVGLVGHLHHGKTALMDLLVEQTHP-D-----FSKNTEADLRYTDTLF--------------------------- 171 (971)
T ss_pred cceEEEEEEeeccccChhHHHHhhceeccc-c-----ccccccccccccccch---------------------------
Confidence 333445789999999999999999998876 2 1223333444443210
Q ss_pred HHHHHhhhhhccCCCccccceEEEEEEecCC--CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEe
Q 004351 101 IEAENMRLERESNSNQFSAKEIIIKVEFKYC--PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILC 178 (759)
Q Consensus 101 Ie~~~~~l~~~~~~~~fS~d~I~leI~~p~~--p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~ 178 (759)
.|+ + + + ..+...+..|-++.... .-++|+||||-..-. .+++.. +.-.+.++|+
T Consensus 172 ~E~--e---R-g--~sIK~~p~Tl~l~D~~~KS~l~nilDTPGHVnF~---------------DE~ta~-l~~sDgvVlv 227 (971)
T KOG0468|consen 172 YEQ--E---R-G--CSIKSTPVTLVLSDSKGKSYLMNILDTPGHVNFS---------------DETTAS-LRLSDGVVLV 227 (971)
T ss_pred hhH--h---c-C--ceEeecceEEEEecCcCceeeeeeecCCCcccch---------------HHHHHH-hhhcceEEEE
Confidence 000 0 0 0 22333344444433221 358899999986531 122222 2334555555
Q ss_pred ecccCCcCcHHHHHHHHHhCcCCCeEEEEecCCCccccccc
Q 004351 179 LEDCSDWSNATTRRVVMQIDPELKRTIIVSTKLDTKIPQFA 219 (759)
Q Consensus 179 V~~~~D~~~~~~l~lar~~Dp~g~RTIgVlTK~D~~~~~~~ 219 (759)
|-.. +-..-..-++++.+-.+....+.|++|.|.++-++.
T Consensus 228 vDv~-EGVmlntEr~ikhaiq~~~~i~vviNKiDRLilELk 267 (971)
T KOG0468|consen 228 VDVA-EGVMLNTERIIKHAIQNRLPIVVVINKVDRLILELK 267 (971)
T ss_pred EEcc-cCceeeHHHHHHHHHhccCcEEEEEehhHHHHHHhc
Confidence 4322 212222345555555566779999999999876653
No 434
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=88.94 E-value=0.3 Score=50.33 Aligned_cols=25 Identities=28% Similarity=0.389 Sum_probs=22.5
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.++++|..++|||+||+.|+|.--|
T Consensus 36 ~~~l~G~nGsGKSTLl~~i~G~~~~ 60 (224)
T TIGR02324 36 CVALSGPSGAGKSTLLKSLYANYLP 60 (224)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4889999999999999999998544
No 435
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=88.93 E-value=0.31 Score=51.12 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=21.1
Q ss_pred EEEEEeccCCchHHHHHHHhCCc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQ 48 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~ 48 (759)
.++++|..+||||+|++.|+|..
T Consensus 35 ~~~i~G~nGsGKSTLl~~i~Gl~ 57 (252)
T CHL00131 35 IHAIMGPNGSGKSTLSKVIAGHP 57 (252)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 47799999999999999999974
No 436
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=88.91 E-value=0.29 Score=52.08 Aligned_cols=32 Identities=25% Similarity=0.397 Sum_probs=26.2
Q ss_pred EEEEeccCCchHHHHHHHhCCccceecCcccccc
Q 004351 27 VLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRR 60 (759)
Q Consensus 27 IVVVG~QSsGKSSLLEAL~G~~fp~~g~g~cTR~ 60 (759)
+.+||..+||||||+.+|+|+--|. .|.++-+
T Consensus 33 ~~iiGPNGaGKSTLlK~iLGll~p~--~G~i~~~ 64 (254)
T COG1121 33 TALIGPNGAGKSTLLKAILGLLKPS--SGEIKIF 64 (254)
T ss_pred EEEECCCCCCHHHHHHHHhCCCcCC--cceEEEc
Confidence 7899999999999999999987774 3555533
No 437
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=88.90 E-value=0.31 Score=50.07 Aligned_cols=25 Identities=36% Similarity=0.380 Sum_probs=22.4
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
-++++|..++|||+|++.|+|..-|
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~G~~~~ 56 (221)
T cd03244 32 KVGIVGRTGSGKSSLLLALFRLVEL 56 (221)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC
Confidence 4789999999999999999998654
No 438
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=88.88 E-value=0.3 Score=51.95 Aligned_cols=30 Identities=27% Similarity=0.171 Sum_probs=25.0
Q ss_pred EEEEEeccCCchHHHHHHHhCCccceecCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFNHVGGGTK 57 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp~~g~g~c 57 (759)
.+.++|..+|||||||+.|+|+-=| . .|.+
T Consensus 28 ~~~IvG~nGsGKSTLlk~l~Gl~~p-~-~G~I 57 (255)
T cd03236 28 VLGLVGPNGIGKSTALKILAGKLKP-N-LGKF 57 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCC-C-CceE
Confidence 5899999999999999999999644 3 4444
No 439
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=88.85 E-value=0.32 Score=48.11 Aligned_cols=25 Identities=32% Similarity=0.434 Sum_probs=22.7
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.++++|..++|||+|+..|+|.--|
T Consensus 30 ~~~l~G~nGsGKstLl~~i~G~~~~ 54 (171)
T cd03228 30 KVAIVGPSGSGKSTLLKLLLRLYDP 54 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC
Confidence 5899999999999999999998644
No 440
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=88.78 E-value=0.27 Score=51.82 Aligned_cols=26 Identities=23% Similarity=0.257 Sum_probs=22.8
Q ss_pred CEEEEEeccCCchHHHHHHHhCCccc
Q 004351 25 PAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
+-.+++|..+|||||||+||.+.-.+
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l~~ 48 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVLGE 48 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 46899999999999999999976544
No 441
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=88.73 E-value=0.32 Score=48.59 Aligned_cols=25 Identities=32% Similarity=0.457 Sum_probs=22.4
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.++++|..++|||||++.|+|.--|
T Consensus 27 ~~~l~G~nGsGKStLl~~i~G~~~~ 51 (180)
T cd03214 27 IVGILGPNGAGKSTLLKTLAGLLKP 51 (180)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4789999999999999999998644
No 442
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=88.73 E-value=0.29 Score=52.19 Aligned_cols=25 Identities=32% Similarity=0.308 Sum_probs=22.5
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.++++|..||||||||..|+|.--|
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~~p 53 (271)
T PRK13638 29 VTGLVGANGCGKSTLFMNLSGLLRP 53 (271)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCC
Confidence 4789999999999999999998655
No 443
>PRK10908 cell division protein FtsE; Provisional
Probab=88.71 E-value=0.32 Score=50.11 Aligned_cols=25 Identities=28% Similarity=0.535 Sum_probs=22.3
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.++++|..+||||||+..|+|.--|
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~~~ 54 (222)
T PRK10908 30 MAFLTGHSGAGKSTLLKLICGIERP 54 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4679999999999999999998754
No 444
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=88.67 E-value=0.31 Score=51.94 Aligned_cols=25 Identities=28% Similarity=0.488 Sum_probs=22.4
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.++++|..|+||||||+.|+|.--|
T Consensus 41 ~~~i~G~NGsGKSTLl~~l~Gl~~p 65 (267)
T PRK15112 41 TLAIIGENGSGKSTLAKMLAGMIEP 65 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCCC
Confidence 4789999999999999999998655
No 445
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=88.65 E-value=0.31 Score=52.56 Aligned_cols=25 Identities=24% Similarity=0.466 Sum_probs=22.6
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.++++|..||||||||..|+|.--|
T Consensus 39 ~~~l~G~nGsGKSTLl~~l~Gl~~p 63 (289)
T PRK13645 39 VTCVIGTTGSGKSTMIQLTNGLIIS 63 (289)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4789999999999999999998655
No 446
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=88.63 E-value=0.32 Score=50.74 Aligned_cols=25 Identities=16% Similarity=0.403 Sum_probs=22.2
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.++++|..++||||||..|+|.--|
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~G~~~p 54 (242)
T TIGR03411 30 LRVIIGPNGAGKTTMMDVITGKTRP 54 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3679999999999999999998645
No 447
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=88.59 E-value=0.32 Score=51.01 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=21.1
Q ss_pred EEEEEeccCCchHHHHHHHhCCc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQ 48 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~ 48 (759)
.++++|..|||||+||+.|+|.-
T Consensus 31 ~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14240 31 VTALIGPSGCGKSTFLRTLNRMN 53 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 47899999999999999999974
No 448
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=88.57 E-value=0.32 Score=50.39 Aligned_cols=25 Identities=28% Similarity=0.422 Sum_probs=22.3
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.++++|..+||||||++.|+|.--|
T Consensus 50 ~~~i~G~nGsGKSTLl~~l~G~~~p 74 (224)
T cd03220 50 RIGLIGRNGAGKSTLLRLLAGIYPP 74 (224)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4789999999999999999998544
No 449
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=88.50 E-value=0.33 Score=49.54 Aligned_cols=25 Identities=32% Similarity=0.561 Sum_probs=22.7
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.++++|..+|||||||..|+|.--|
T Consensus 26 ~~~l~G~nGsGKSTLl~~l~gl~~~ 50 (211)
T cd03298 26 ITAIVGPSGSGKSTLLNLIAGFETP 50 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4899999999999999999999644
No 450
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=88.49 E-value=0.31 Score=51.19 Aligned_cols=23 Identities=17% Similarity=0.388 Sum_probs=21.0
Q ss_pred EEEEEeccCCchHHHHHHHhCCc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQ 48 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~ 48 (759)
.++++|..|+|||||+++|+|.-
T Consensus 31 ~~~i~G~nGsGKSTLl~~i~Gl~ 53 (250)
T PRK14262 31 ITAIIGPSGCGKTTLLRSINRMN 53 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 37799999999999999999974
No 451
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=88.42 E-value=0.34 Score=51.36 Aligned_cols=27 Identities=22% Similarity=0.169 Sum_probs=24.0
Q ss_pred EEEEEeccCCchHHHHHHHhCCcccee
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFNHV 52 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp~~ 52 (759)
.++++|..++|||+||+.|+|..-|..
T Consensus 38 ~~~i~G~nGsGKSTLl~~iaG~~~~~~ 64 (257)
T PRK14246 38 IFGIMGPSGSGKSTLLKVLNRLIEIYD 64 (257)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence 689999999999999999999876643
No 452
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=88.39 E-value=2.5 Score=47.75 Aligned_cols=27 Identities=33% Similarity=0.393 Sum_probs=22.0
Q ss_pred CCCEEEEEeccCCchHHHHHHHhCCcc
Q 004351 23 DAPAVLVVGHQTDGKSALVEALMGFQF 49 (759)
Q Consensus 23 ~lPqIVVVG~QSsGKSSLLEAL~G~~f 49 (759)
.-|.+.|||++.||||||..-|+..-+
T Consensus 72 ~~~~vmvvG~vDSGKSTLt~~LaN~~l 98 (398)
T COG1341 72 KVGVVMVVGPVDSGKSTLTTYLANKLL 98 (398)
T ss_pred CCcEEEEECCcCcCHHHHHHHHHHHHh
Confidence 457999999999999999877765443
No 453
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=88.39 E-value=0.33 Score=50.53 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=22.4
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.++++|..++|||+|+++|+|.--|
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G~~~p 57 (237)
T PRK11614 33 IVTLIGANGAGKTTLLGTLCGDPRA 57 (237)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCC
Confidence 4679999999999999999999655
No 454
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=88.39 E-value=0.34 Score=53.97 Aligned_cols=31 Identities=19% Similarity=0.306 Sum_probs=24.5
Q ss_pred EEEEEeccCCchHHHHHHHhCCccceecCcccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFNHVGGGTKT 58 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp~~g~g~cT 58 (759)
-|+|+|..||||||+++||++. +|+ +..+.|
T Consensus 164 nilI~G~tGSGKTTll~aLl~~-i~~-~~rivt 194 (344)
T PRK13851 164 TMLLCGPTGSGKTTMSKTLISA-IPP-QERLIT 194 (344)
T ss_pred eEEEECCCCccHHHHHHHHHcc-cCC-CCCEEE
Confidence 4999999999999999999986 443 334443
No 455
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=88.35 E-value=0.14 Score=51.31 Aligned_cols=21 Identities=29% Similarity=0.520 Sum_probs=0.0
Q ss_pred EEEeccCCchHHHHHHHhCCc
Q 004351 28 LVVGHQTDGKSALVEALMGFQ 48 (759)
Q Consensus 28 VVVG~QSsGKSSLLEAL~G~~ 48 (759)
|+||..+||||++|+||..+-
T Consensus 3 viiG~N~sGKS~il~ai~~~~ 23 (303)
T PF13304_consen 3 VIIGPNGSGKSNILEAIYFLF 23 (303)
T ss_dssp ---------------------
T ss_pred ccccccccccccccccccccc
Confidence 789999999999999998764
No 456
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=88.30 E-value=0.33 Score=51.87 Aligned_cols=25 Identities=32% Similarity=0.515 Sum_probs=22.4
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
-++++|..||||||||..|+|.--|
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~Gl~~p 61 (271)
T PRK13632 37 YVAILGHNGSGKSTISKILTGLLKP 61 (271)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4779999999999999999999644
No 457
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=88.30 E-value=0.35 Score=51.08 Aligned_cols=25 Identities=28% Similarity=0.357 Sum_probs=22.8
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.++++|..|||||+|+..|+|.--|
T Consensus 34 ~~~i~G~nGsGKSTLl~~l~Gl~~p 58 (258)
T PRK11701 34 VLGIVGESGSGKTTLLNALSARLAP 58 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5889999999999999999998655
No 458
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=88.25 E-value=0.33 Score=52.10 Aligned_cols=25 Identities=16% Similarity=0.414 Sum_probs=22.8
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.++++|..++|||+||.+|+|.--|
T Consensus 38 ~~~l~G~nGsGKSTLl~~l~Gl~~~ 62 (280)
T PRK13633 38 FLVILGRNGSGKSTIAKHMNALLIP 62 (280)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3789999999999999999999766
No 459
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=88.24 E-value=0.33 Score=51.59 Aligned_cols=25 Identities=32% Similarity=0.396 Sum_probs=22.2
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.++++|..|||||+|+++|+|.--|
T Consensus 39 ~~~i~G~nGsGKSTLl~~l~Gl~~~ 63 (265)
T PRK10575 39 VTGLIGHNGSGKSTLLKMLGRHQPP 63 (265)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCC
Confidence 4689999999999999999998644
No 460
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=88.20 E-value=0.34 Score=50.32 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=22.8
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.+.++|..+||||+||+.|+|.--|
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~~ 54 (237)
T cd03252 30 VVGIVGRSGSGKSTLTKLIQRFYVP 54 (237)
T ss_pred EEEEECCCCCCHHHHHHHHhcCcCC
Confidence 4889999999999999999999755
No 461
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=88.19 E-value=0.35 Score=48.58 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=20.8
Q ss_pred EEEEEeccCCchHHHHHHHhCCc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQ 48 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~ 48 (759)
-||++|..|||||||+..|.+..
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 37899999999999999998864
No 462
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=88.19 E-value=0.35 Score=50.66 Aligned_cols=25 Identities=20% Similarity=0.383 Sum_probs=22.1
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.++++|..|||||+|++.|+|.--|
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~~~ 55 (250)
T PRK11264 31 VVAIIGPSGSGKTTLLRCINLLEQP 55 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 3679999999999999999998644
No 463
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=88.17 E-value=0.34 Score=49.37 Aligned_cols=24 Identities=38% Similarity=0.430 Sum_probs=22.1
Q ss_pred EEEEEeccCCchHHHHHHHhCCcc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQF 49 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~f 49 (759)
.++++|..++|||+||+.|+|..-
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 35 MVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred EEEEECCCCCCHHHHHHHhcccCC
Confidence 578999999999999999999964
No 464
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=88.14 E-value=0.35 Score=51.41 Aligned_cols=25 Identities=40% Similarity=0.506 Sum_probs=22.7
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.++++|..||||||||..|+|.--|
T Consensus 40 ~~~I~G~NGsGKSTLlk~l~Gl~~p 64 (257)
T PRK11247 40 FVAVVGRSGCGKSTLLRLLAGLETP 64 (257)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4789999999999999999998655
No 465
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=88.11 E-value=0.34 Score=50.26 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=22.0
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
-++++|..||||||||+.|+|.-=|
T Consensus 14 ~~~i~G~nGsGKSTLl~~l~Gl~~p 38 (230)
T TIGR02770 14 VLALVGESGSGKSLTCLAILGLLPP 38 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 3779999999999999999998533
No 466
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=88.10 E-value=0.36 Score=49.78 Aligned_cols=25 Identities=32% Similarity=0.401 Sum_probs=22.4
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.++++|..++|||+|+++|+|.--|
T Consensus 42 ~~~i~G~nGsGKSTLl~~l~Gl~~~ 66 (226)
T cd03248 42 VTALVGPSGSGKSTVVALLENFYQP 66 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcCcCC
Confidence 4799999999999999999998644
No 467
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=88.07 E-value=0.36 Score=51.51 Aligned_cols=25 Identities=20% Similarity=0.325 Sum_probs=22.6
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.+.++|..||||||||+.|+|.--|
T Consensus 52 ~~~l~G~nGsGKSTLl~~L~Gl~~p 76 (269)
T cd03294 52 IFVIMGLSGSGKSTLLRCINRLIEP 76 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4789999999999999999998755
No 468
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=88.06 E-value=0.34 Score=51.58 Aligned_cols=25 Identities=28% Similarity=0.509 Sum_probs=22.4
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.++++|..|||||||++.|+|.--|
T Consensus 37 ~~~I~G~nGsGKSTLl~~i~Gl~~~ 61 (269)
T PRK13648 37 WTSIVGHNGSGKSTIAKLMIGIEKV 61 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4789999999999999999998644
No 469
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=88.03 E-value=0.35 Score=53.58 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=23.4
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
-+|++|..|+||||+|+.|.|+.=|
T Consensus 31 f~vllGPSGcGKSTlLr~IAGLe~~ 55 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGLEEP 55 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3899999999999999999999977
No 470
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=88.02 E-value=0.36 Score=51.74 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=22.4
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.++++|..|||||+|++.|+|.--|
T Consensus 32 ~~~i~G~NGsGKSTLl~~l~Gl~~p 56 (277)
T PRK13652 32 RIAVIGPNGAGKSTLFRHFNGILKP 56 (277)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 3679999999999999999998655
No 471
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=88.02 E-value=0.36 Score=50.80 Aligned_cols=23 Identities=30% Similarity=0.523 Sum_probs=21.2
Q ss_pred EEEEEeccCCchHHHHHHHhCCc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQ 48 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~ 48 (759)
-++++|..+||||+|++.|+|..
T Consensus 24 i~~l~G~nGsGKSTLl~~l~Gl~ 46 (248)
T PRK03695 24 ILHLVGPNGAGKSTLLARMAGLL 46 (248)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 36799999999999999999985
No 472
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=88.00 E-value=0.37 Score=50.38 Aligned_cols=25 Identities=12% Similarity=0.254 Sum_probs=22.0
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.++++|..|+|||+||..|+|.--|
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~~ 53 (242)
T cd03295 29 FLVLIGPSGSGKTTTMKMINRLIEP 53 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4679999999999999999998644
No 473
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=87.98 E-value=0.35 Score=50.76 Aligned_cols=23 Identities=22% Similarity=0.433 Sum_probs=21.1
Q ss_pred EEEEEeccCCchHHHHHHHhCCc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQ 48 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~ 48 (759)
.++++|..||||||||+.|+|.-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (252)
T PRK14239 33 ITALIGPSGSGKSTLLRSINRMN 55 (252)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 48899999999999999999973
No 474
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=87.97 E-value=0.36 Score=50.73 Aligned_cols=25 Identities=32% Similarity=0.409 Sum_probs=22.4
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.++++|..|||||+||+.|+|..=|
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~~~ 55 (253)
T TIGR02323 31 VLGIVGESGSGKSTLLGCLAGRLAP 55 (253)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4799999999999999999998644
No 475
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=87.97 E-value=0.35 Score=50.90 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=21.0
Q ss_pred EEEEEeccCCchHHHHHHHhCCc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQ 48 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~ 48 (759)
.++++|..+||||||++.|+|.-
T Consensus 34 ~~~i~G~nGsGKSTLl~~l~Gl~ 56 (253)
T PRK14261 34 VTALIGPSGCGKSTLLRCFNRMN 56 (253)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 47899999999999999999973
No 476
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=87.96 E-value=0.38 Score=49.93 Aligned_cols=25 Identities=32% Similarity=0.533 Sum_probs=22.7
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.++++|..++|||+||..|+|.--|
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~~~ 51 (232)
T PRK10771 27 RVAILGPSGAGKSTLLNLIAGFLTP 51 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4779999999999999999999755
No 477
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=87.95 E-value=0.35 Score=50.93 Aligned_cols=25 Identities=20% Similarity=0.232 Sum_probs=22.5
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.++++|..+|||||||++|+|.--|
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~Gl~~~ 59 (254)
T PRK14273 35 ITALIGPSGCGKSTFLRTLNRMNDL 59 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhccccC
Confidence 5789999999999999999998654
No 478
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=87.85 E-value=0.37 Score=50.69 Aligned_cols=25 Identities=28% Similarity=0.487 Sum_probs=22.2
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
-++++|..|||||+|+..|+|.--|
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~~~ 57 (255)
T PRK11300 33 IVSLIGPNGAGKTTVFNCLTGFYKP 57 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCC
Confidence 4679999999999999999998644
No 479
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=87.82 E-value=0.37 Score=51.24 Aligned_cols=25 Identities=32% Similarity=0.469 Sum_probs=22.5
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.++++|..+||||+||..|+|.--|
T Consensus 39 ~~~i~G~nGsGKSTLl~~l~Gl~~p 63 (265)
T TIGR02769 39 TVGLLGRSGCGKSTLARLLLGLEKP 63 (265)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5789999999999999999998644
No 480
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=87.82 E-value=0.41 Score=49.17 Aligned_cols=25 Identities=36% Similarity=0.569 Sum_probs=22.1
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.++++|..++|||+|++.|+|.-=|
T Consensus 39 ~~~i~G~nGsGKSTLl~~i~G~~~~ 63 (214)
T PRK13543 39 ALLVQGDNGAGKTTLLRVLAGLLHV 63 (214)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCCC
Confidence 4779999999999999999998544
No 481
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=87.82 E-value=2.1 Score=42.07 Aligned_cols=69 Identities=10% Similarity=0.124 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhcCccceeEee--cccCCcCc-HHHHHHHHHhCcCCCeEEEEecCCCcccccccChhhHHHhh
Q 004351 159 RAVESLVRAKMQHREFIILCL--EDCSDWSN-ATTRRVVMQIDPELKRTIIVSTKLDTKIPQFARASDVEVFL 228 (759)
Q Consensus 159 ~~v~~lv~~Yi~~~~~IIL~V--~~~~D~~~-~~~l~lar~~Dp~g~RTIgVlTK~D~~~~~~~~~~~~~~~L 228 (759)
+..+.|...|-+.++.+|++- ...--+.| ..+++-++.-.|. -.-|.|-+|.|.-....-...++.+|-
T Consensus 68 ErFrtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncds-v~~vLVGNK~d~~~RrvV~t~dAr~~A 139 (198)
T KOG0079|consen 68 ERFRTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDS-VPKVLVGNKNDDPERRVVDTEDARAFA 139 (198)
T ss_pred HHHHHHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCcc-ccceecccCCCCccceeeehHHHHHHH
Confidence 567799999999999988774 22222333 4466666655443 455779999998544433345665553
No 482
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=87.75 E-value=0.36 Score=50.62 Aligned_cols=23 Identities=22% Similarity=0.354 Sum_probs=21.3
Q ss_pred EEEEEeccCCchHHHHHHHhCCc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQ 48 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~ 48 (759)
.++++|..|||||||++.|+|.-
T Consensus 31 ~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 31 ITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 47899999999999999999985
No 483
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=87.74 E-value=0.37 Score=50.35 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=21.4
Q ss_pred EEEEEeccCCchHHHHHHHhCCc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQ 48 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~ 48 (759)
.++++|..++|||+|++.|+|.-
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~ 51 (248)
T PRK09580 29 VHAIMGPNGSGKSTLSATLAGRE 51 (248)
T ss_pred EEEEECCCCCCHHHHHHHHcCCc
Confidence 47899999999999999999985
No 484
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=87.70 E-value=0.37 Score=51.91 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=22.8
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.++++|..|||||||+..|+|.--|
T Consensus 35 ~~~i~G~nGsGKSTLl~~L~Gl~~p 59 (286)
T PRK13646 35 YYAIVGQTGSGKSTLIQNINALLKP 59 (286)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 3799999999999999999998755
No 485
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=87.70 E-value=0.42 Score=49.87 Aligned_cols=25 Identities=28% Similarity=0.489 Sum_probs=22.2
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.++++|..++|||+|++.|+|.--|
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~~~ 52 (237)
T TIGR00968 28 LVALLGPSGSGKSTLLRIIAGLEQP 52 (237)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4789999999999999999998544
No 486
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=87.66 E-value=0.41 Score=49.02 Aligned_cols=25 Identities=32% Similarity=0.501 Sum_probs=22.4
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.+.++|..+||||||+++|+|.--|
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~~~ 50 (213)
T TIGR01277 26 IVAIMGPSGAGKSTLLNLIAGFIEP 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4789999999999999999998644
No 487
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=87.61 E-value=0.36 Score=50.75 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=20.7
Q ss_pred EEEEEeccCCchHHHHHHHhCC
Q 004351 26 AVLVVGHQTDGKSALVEALMGF 47 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~ 47 (759)
.++++|..|||||+||+.|+|.
T Consensus 34 ~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 34 VTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4789999999999999999997
No 488
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=87.60 E-value=0.38 Score=50.19 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=22.3
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.++++|..+|||||||..|+|.--|
T Consensus 49 ~~~i~G~NGsGKSTLl~~i~Gl~~p 73 (236)
T cd03267 49 IVGFIGPNGAGKTTTLKILSGLLQP 73 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCC
Confidence 3679999999999999999998655
No 489
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=87.58 E-value=0.4 Score=50.29 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=22.6
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.++++|..+||||+||..|+|.--|
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~p 53 (247)
T TIGR00972 29 VTALIGPSGCGKSTLLRSLNRMNDL 53 (247)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCC
Confidence 4779999999999999999999755
No 490
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=87.55 E-value=0.38 Score=52.50 Aligned_cols=25 Identities=20% Similarity=0.489 Sum_probs=22.7
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.++++|..+||||+|++.|+|+--|
T Consensus 35 ~v~iiG~nGsGKSTLl~~L~Gl~~p 59 (305)
T PRK13651 35 FIAIIGQTGSGKTTFIEHLNALLLP 59 (305)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCC
Confidence 4899999999999999999998644
No 491
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=87.51 E-value=0.38 Score=50.81 Aligned_cols=25 Identities=20% Similarity=0.244 Sum_probs=22.2
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.+.++|..+|||||||+.|+|.--|
T Consensus 32 ~~~i~G~nGsGKSTLl~~laGl~~~ 56 (258)
T PRK14241 32 VTAFIGPSGCGKSTVLRTLNRMHEV 56 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCc
Confidence 3789999999999999999998643
No 492
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=87.50 E-value=0.4 Score=50.80 Aligned_cols=25 Identities=36% Similarity=0.444 Sum_probs=22.0
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
-++++|..||||||||+.|+|.--|
T Consensus 30 ~~~i~G~nGsGKSTLl~~i~G~~~p 54 (258)
T PRK13548 30 VVAILGPNGAGKSTLLRALSGELSP 54 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3679999999999999999998544
No 493
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=87.48 E-value=0.4 Score=51.13 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=22.6
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.++++|..+||||+||..|+|.--|
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~Gl~~p 59 (269)
T PRK11831 35 ITAIMGPSGIGKTTLLRLIGGQIAP 59 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4889999999999999999998644
No 494
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=87.47 E-value=0.38 Score=50.88 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=21.8
Q ss_pred EEEEEeccCCchHHHHHHHhCCcc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQF 49 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~f 49 (759)
.++++|..|||||+||+.|+|.--
T Consensus 40 ~~~l~G~nGsGKSTLl~~l~G~~~ 63 (259)
T PRK14274 40 VTAIIGPSGCGKSTFIKTLNLMIQ 63 (259)
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 488999999999999999999753
No 495
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=87.38 E-value=0.42 Score=51.08 Aligned_cols=25 Identities=44% Similarity=0.567 Sum_probs=22.4
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.++++|..|||||+||+.|+|.--|
T Consensus 35 ~~~l~G~nGsGKSTLl~~l~Gl~~p 59 (272)
T PRK15056 35 IAALVGVNGSGKSTLFKALMGFVRL 59 (272)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5789999999999999999998544
No 496
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=87.37 E-value=0.42 Score=49.49 Aligned_cols=25 Identities=24% Similarity=0.437 Sum_probs=22.4
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.+.++|..+||||+|+..|+|..=|
T Consensus 8 ~~~l~G~nGsGKSTLl~~l~G~~~~ 32 (223)
T TIGR03771 8 LLGLLGPNGAGKTTLLRAILGLIPP 32 (223)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4789999999999999999998644
No 497
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=87.36 E-value=0.42 Score=51.53 Aligned_cols=25 Identities=32% Similarity=0.437 Sum_probs=22.3
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.++++|..++||||||+.|+|.-=|
T Consensus 35 ~~~iiG~NGaGKSTLl~~l~Gl~~p 59 (287)
T PRK13641 35 FVALVGHTGSGKSTLMQHFNALLKP 59 (287)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4679999999999999999998655
No 498
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=87.36 E-value=0.42 Score=51.36 Aligned_cols=25 Identities=40% Similarity=0.593 Sum_probs=22.4
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.++++|..|+||||||+.|+|.--|
T Consensus 35 ~~~i~G~nGaGKSTLl~~i~G~~~p 59 (279)
T PRK13635 35 WVAIVGHNGSGKSTLAKLLNGLLLP 59 (279)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCC
Confidence 4689999999999999999999644
No 499
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=87.36 E-value=0.43 Score=50.22 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=22.5
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.++++|..++|||+|++.|+|.--|
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~~ 52 (252)
T TIGR03005 28 KVALIGPSGSGKSTILRILMTLEPI 52 (252)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4789999999999999999998655
No 500
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=87.34 E-value=0.4 Score=50.79 Aligned_cols=25 Identities=32% Similarity=0.477 Sum_probs=22.6
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.++++|..|||||+|+..|+|.--|
T Consensus 32 ~~~i~G~nGsGKSTLl~~i~G~~~p 56 (262)
T PRK09984 32 MVALLGPSGSGKSTLLRHLSGLITG 56 (262)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCC
Confidence 5899999999999999999998644
Done!