Query 004351
Match_columns 759
No_of_seqs 261 out of 1289
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 22:27:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004351.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004351hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zvr_A Dynamin-1; hydrolase, D 100.0 2E-46 6.7E-51 442.2 45.9 469 1-555 26-510 (772)
2 3szr_A Interferon-induced GTP- 100.0 4.1E-45 1.4E-49 426.0 46.9 562 3-736 26-602 (608)
3 3t34_A Dynamin-related protein 100.0 3.3E-40 1.1E-44 361.0 28.8 315 1-356 1-328 (360)
4 2x2e_A Dynamin-1; nitration, h 100.0 7.3E-35 2.5E-39 318.1 34.3 327 1-372 6-342 (353)
5 1jwy_B Dynamin A GTPase domain 100.0 9.3E-30 3.2E-34 271.3 28.8 307 2-348 1-315 (315)
6 2aka_B Dynamin-1; fusion prote 100.0 2.4E-28 8.4E-33 257.8 30.1 292 1-329 1-297 (299)
7 2j69_A Bacterial dynamin-like 99.6 1.3E-13 4.6E-18 163.0 22.8 172 23-216 68-245 (695)
8 4dhe_A Probable GTP-binding pr 99.0 1.8E-09 6.3E-14 107.9 12.9 129 22-215 27-158 (223)
9 2qpt_A EH domain-containing pr 99.0 5.5E-10 1.9E-14 128.8 9.5 167 23-215 64-232 (550)
10 3pqc_A Probable GTP-binding pr 98.9 1E-08 3.5E-13 99.4 14.2 77 133-215 69-147 (195)
11 1svi_A GTP-binding protein YSX 98.9 8.8E-09 3E-13 100.4 12.9 126 22-215 21-148 (195)
12 3t5d_A Septin-7; GTP-binding p 98.9 1.7E-08 5.6E-13 105.8 14.0 80 133-215 66-158 (274)
13 3lxx_A GTPase IMAP family memb 98.8 8.7E-09 3E-13 105.2 10.2 126 23-215 28-159 (239)
14 3iby_A Ferrous iron transport 98.8 1.4E-08 5E-13 105.7 11.0 122 24-215 1-124 (256)
15 1wf3_A GTP-binding protein; GT 98.7 6.9E-08 2.4E-12 103.0 13.5 124 22-215 5-131 (301)
16 2cxx_A Probable GTP-binding pr 98.7 5.6E-08 1.9E-12 93.9 11.6 122 24-215 1-136 (190)
17 1h65_A Chloroplast outer envel 98.7 1.1E-07 3.7E-12 99.2 13.0 30 21-50 36-65 (270)
18 4dcu_A GTP-binding protein ENG 98.7 3.9E-08 1.3E-12 110.5 10.2 126 20-214 19-144 (456)
19 2xtp_A GTPase IMAP family memb 98.7 8.2E-08 2.8E-12 99.1 11.7 76 133-214 72-152 (260)
20 3iev_A GTP-binding protein ERA 98.7 1.2E-07 4.3E-12 101.1 13.5 125 23-214 9-135 (308)
21 2dyk_A GTP-binding protein; GT 98.7 8.7E-08 3E-12 89.9 10.6 71 133-215 50-122 (161)
22 2qu8_A Putative nucleolar GTP- 98.6 1.6E-07 5.3E-12 94.9 12.3 27 24-50 29-55 (228)
23 2lkc_A Translation initiation 98.6 4.7E-08 1.6E-12 93.5 7.0 115 23-215 7-121 (178)
24 3def_A T7I23.11 protein; chlor 98.6 2.7E-07 9.1E-12 95.9 12.3 29 22-50 34-62 (262)
25 1mky_A Probable GTP-binding pr 98.6 1.4E-07 4.9E-12 105.4 10.9 74 133-214 50-123 (439)
26 3i8s_A Ferrous iron transport 98.6 1.4E-07 4.6E-12 99.1 9.9 122 24-215 3-126 (274)
27 3lxw_A GTPase IMAP family memb 98.6 1.3E-07 4.4E-12 97.7 9.0 26 25-50 22-47 (247)
28 2f7s_A C25KG, RAS-related prot 98.5 3.7E-07 1.3E-11 90.8 11.6 66 133-214 85-154 (217)
29 3clv_A RAB5 protein, putative; 98.5 2.2E-07 7.5E-12 90.0 9.5 29 23-51 6-34 (208)
30 2ged_A SR-beta, signal recogni 98.5 2.9E-07 9.8E-12 89.6 9.4 30 21-50 45-74 (193)
31 1u8z_A RAS-related protein RAL 98.5 3.2E-07 1.1E-11 86.1 9.4 66 133-215 53-123 (168)
32 2hjg_A GTP-binding protein ENG 98.5 2.6E-07 8.7E-12 103.3 10.0 74 132-214 51-124 (436)
33 2y8e_A RAB-protein 6, GH09086P 98.5 1.3E-07 4.4E-12 90.1 6.6 31 20-50 10-40 (179)
34 2bme_A RAB4A, RAS-related prot 98.5 2.9E-07 1E-11 88.7 9.0 67 133-215 60-129 (186)
35 3tkl_A RAS-related protein RAB 98.5 4.3E-07 1.5E-11 88.3 10.1 68 133-216 66-136 (196)
36 2il1_A RAB12; G-protein, GDP, 98.5 3.6E-07 1.2E-11 89.5 9.3 67 133-215 76-145 (192)
37 1z0f_A RAB14, member RAS oncog 98.5 8E-07 2.7E-11 84.5 11.5 67 133-215 65-134 (179)
38 3a1s_A Iron(II) transport prot 98.5 4.1E-07 1.4E-11 94.7 10.1 118 24-215 5-124 (258)
39 2fn4_A P23, RAS-related protei 98.5 3.5E-07 1.2E-11 87.2 8.8 28 23-50 8-35 (181)
40 1g16_A RAS-related protein SEC 98.4 3E-07 1E-11 86.8 7.8 66 133-214 53-121 (170)
41 2fh5_B SR-beta, signal recogni 98.4 7.6E-07 2.6E-11 88.3 11.1 28 23-50 6-33 (214)
42 2gj8_A MNME, tRNA modification 98.4 1.2E-06 4E-11 84.7 12.1 74 133-214 53-128 (172)
43 2g6b_A RAS-related protein RAB 98.4 5.2E-07 1.8E-11 86.3 9.5 67 133-215 61-130 (180)
44 3tw8_B RAS-related protein RAB 98.4 1.9E-07 6.5E-12 89.1 6.3 28 23-50 8-35 (181)
45 1z06_A RAS-related protein RAB 98.4 9.6E-07 3.3E-11 85.8 11.4 67 133-215 70-141 (189)
46 3cph_A RAS-related protein SEC 98.4 3.3E-07 1.1E-11 90.4 8.0 66 133-214 70-138 (213)
47 1c1y_A RAS-related protein RAP 98.4 8.6E-07 2.9E-11 83.4 10.5 67 133-215 52-122 (167)
48 1z0j_A RAB-22, RAS-related pro 98.4 4E-07 1.4E-11 85.9 8.2 67 133-215 56-125 (170)
49 3k53_A Ferrous iron transport 98.4 4.7E-07 1.6E-11 94.4 9.4 28 23-50 2-29 (271)
50 1nrj_B SR-beta, signal recogni 98.4 5.8E-07 2E-11 89.4 9.7 30 21-50 9-38 (218)
51 2ce2_X GTPase HRAS; signaling 98.4 4.4E-07 1.5E-11 84.8 8.3 26 25-50 4-29 (166)
52 2a9k_A RAS-related protein RAL 98.4 5.9E-07 2E-11 86.1 9.3 30 21-50 15-44 (187)
53 1f6b_A SAR1; gtpases, N-termin 98.4 3.2E-07 1.1E-11 90.6 7.5 34 17-50 18-51 (198)
54 4dcu_A GTP-binding protein ENG 98.4 3.5E-07 1.2E-11 102.8 8.7 77 133-216 244-321 (456)
55 1ek0_A Protein (GTP-binding pr 98.4 2.6E-07 9E-12 87.0 6.5 67 133-215 53-122 (170)
56 1zj6_A ADP-ribosylation factor 98.4 1.3E-06 4.5E-11 84.7 11.6 28 23-50 15-42 (187)
57 1ky3_A GTP-binding protein YPT 98.4 1.6E-07 5.6E-12 89.7 5.0 28 23-50 7-34 (182)
58 1kao_A RAP2A; GTP-binding prot 98.4 8.5E-07 2.9E-11 83.1 9.8 66 133-215 52-122 (167)
59 2oil_A CATX-8, RAS-related pro 98.4 5.5E-07 1.9E-11 87.7 8.8 66 133-215 75-144 (193)
60 1zbd_A Rabphilin-3A; G protein 98.4 8.6E-07 2.9E-11 87.0 10.1 66 133-215 58-127 (203)
61 1z08_A RAS-related protein RAB 98.4 3.5E-07 1.2E-11 86.5 7.1 26 25-50 7-32 (170)
62 3q72_A GTP-binding protein RAD 98.4 5.4E-07 1.8E-11 85.0 8.3 27 24-50 2-28 (166)
63 2bov_A RAla, RAS-related prote 98.4 8.3E-07 2.9E-11 86.9 9.9 30 21-50 11-40 (206)
64 1z2a_A RAS-related protein RAB 98.4 3.2E-07 1.1E-11 86.4 6.6 26 25-50 6-31 (168)
65 1r8s_A ADP-ribosylation factor 98.4 1.2E-06 4.2E-11 82.3 10.2 68 132-215 44-115 (164)
66 4bas_A ADP-ribosylation factor 98.4 4.5E-07 1.5E-11 88.3 7.3 30 21-50 14-43 (199)
67 2wji_A Ferrous iron transport 98.4 1.2E-06 4.1E-11 83.6 10.2 26 25-50 4-29 (165)
68 1wms_A RAB-9, RAB9, RAS-relate 98.4 3.6E-07 1.2E-11 87.2 6.5 27 24-50 7-33 (177)
69 2nzj_A GTP-binding protein REM 98.4 1.4E-06 4.9E-11 82.6 10.6 27 24-50 4-30 (175)
70 2efe_B Small GTP-binding prote 98.4 8.8E-07 3E-11 84.7 9.2 66 133-215 62-131 (181)
71 3bc1_A RAS-related protein RAB 98.4 1.8E-06 6.2E-11 83.1 11.4 67 133-215 71-141 (195)
72 4djt_A GTP-binding nuclear pro 98.4 5E-07 1.7E-11 89.9 7.2 68 133-216 62-132 (218)
73 2erx_A GTP-binding protein DI- 98.3 8.3E-07 2.8E-11 83.7 8.2 26 25-50 4-29 (172)
74 2gf9_A RAS-related protein RAB 98.3 1.2E-06 4.2E-11 85.0 9.6 67 133-215 72-141 (189)
75 4dsu_A GTPase KRAS, isoform 2B 98.3 7.1E-07 2.4E-11 85.9 7.7 66 133-214 53-122 (189)
76 1zd9_A ADP-ribosylation factor 98.3 1.6E-06 5.3E-11 84.5 10.1 67 132-215 67-138 (188)
77 1ega_A Protein (GTP-binding pr 98.3 5.1E-07 1.8E-11 96.1 7.1 123 22-215 6-130 (301)
78 2fg5_A RAB-22B, RAS-related pr 98.3 1.1E-06 3.7E-11 85.9 8.9 66 133-215 73-142 (192)
79 2p5s_A RAS and EF-hand domain 98.3 6.9E-07 2.4E-11 87.8 7.4 66 133-214 78-146 (199)
80 2o52_A RAS-related protein RAB 98.3 7.6E-07 2.6E-11 87.9 7.7 67 133-215 75-144 (200)
81 2h17_A ADP-ribosylation factor 98.3 1.1E-06 3.7E-11 85.0 8.4 28 22-49 19-46 (181)
82 2bcg_Y Protein YP2, GTP-bindin 98.3 1.1E-06 3.7E-11 86.6 8.5 66 133-215 58-127 (206)
83 2a5j_A RAS-related protein RAB 98.3 1.4E-06 4.8E-11 84.9 9.1 67 133-215 71-140 (191)
84 3b1v_A Ferrous iron uptake tra 98.3 1.2E-06 4.3E-11 92.0 9.3 70 132-214 49-120 (272)
85 1upt_A ARL1, ADP-ribosylation 98.3 7.1E-07 2.4E-11 84.4 6.7 68 132-215 51-122 (171)
86 3dz8_A RAS-related protein RAB 98.3 1E-06 3.5E-11 85.9 8.0 67 133-215 73-142 (191)
87 3con_A GTPase NRAS; structural 98.3 9.3E-07 3.2E-11 85.7 7.7 67 133-215 70-140 (190)
88 2hxs_A RAB-26, RAS-related pro 98.3 6.7E-07 2.3E-11 85.3 6.6 27 24-50 6-32 (178)
89 1moz_A ARL1, ADP-ribosylation 98.3 2.3E-06 7.8E-11 82.1 10.3 27 23-49 17-43 (183)
90 2ew1_A RAS-related protein RAB 98.3 1.2E-06 4.2E-11 87.0 8.7 66 133-215 76-145 (201)
91 2wjg_A FEOB, ferrous iron tran 98.3 2.2E-06 7.4E-11 82.8 10.1 30 21-50 4-33 (188)
92 3q85_A GTP-binding protein REM 98.3 1.7E-06 5.7E-11 81.8 8.9 27 24-50 2-28 (169)
93 3oes_A GTPase rhebl1; small GT 98.3 8.5E-07 2.9E-11 87.3 7.0 28 23-50 23-50 (201)
94 3gee_A MNME, tRNA modification 98.3 6.1E-07 2.1E-11 101.7 6.7 72 133-215 282-357 (476)
95 2qtf_A Protein HFLX, GTP-bindi 98.3 3.9E-06 1.3E-10 91.9 12.8 123 23-215 178-306 (364)
96 1x3s_A RAS-related protein RAB 98.3 1.2E-06 4E-11 84.9 7.6 28 23-50 14-41 (195)
97 2hup_A RAS-related protein RAB 98.3 3.2E-06 1.1E-10 83.5 10.7 67 133-215 79-148 (201)
98 3t5g_A GTP-binding protein RHE 98.3 1.5E-06 5.1E-11 83.4 7.9 27 24-50 6-32 (181)
99 3llu_A RAS-related GTP-binding 98.3 3.7E-06 1.3E-10 82.5 10.8 118 23-215 19-143 (196)
100 1ksh_A ARF-like protein 2; sma 98.3 2E-06 7E-11 83.0 8.8 68 132-215 62-133 (186)
101 2hjg_A GTP-binding protein ENG 98.3 6.2E-07 2.1E-11 100.2 5.8 76 133-215 224-300 (436)
102 2yc2_C IFT27, small RAB-relate 98.3 8.3E-07 2.8E-11 86.9 6.0 66 133-215 74-146 (208)
103 1r2q_A RAS-related protein RAB 98.3 1.1E-06 3.8E-11 82.7 6.7 27 24-50 6-32 (170)
104 1m2o_B GTP-binding protein SAR 98.2 1.8E-06 6.1E-11 84.6 8.3 30 21-50 20-49 (190)
105 3kkq_A RAS-related protein M-R 98.2 2.8E-06 9.6E-11 81.6 9.5 30 21-50 15-44 (183)
106 2h57_A ADP-ribosylation factor 98.2 1.8E-06 6.3E-11 83.9 7.6 27 22-48 19-45 (190)
107 2fu5_C RAS-related protein RAB 98.2 5.1E-07 1.7E-11 86.9 3.5 66 133-215 58-127 (183)
108 1xzp_A Probable tRNA modificat 98.2 1.6E-06 5.4E-11 98.4 8.1 71 133-214 292-363 (482)
109 1fzq_A ADP-ribosylation factor 98.2 5.9E-06 2E-10 80.1 11.0 29 21-49 13-41 (181)
110 2e87_A Hypothetical protein PH 98.2 1.8E-05 6.2E-10 86.0 15.9 28 22-49 165-192 (357)
111 3qq5_A Small GTP-binding prote 98.2 2.2E-06 7.7E-11 95.6 8.9 123 23-216 33-155 (423)
112 1vg8_A RAS-related protein RAB 98.2 7.4E-07 2.5E-11 87.5 4.3 28 23-50 7-34 (207)
113 2b6h_A ADP-ribosylation factor 98.2 3.2E-06 1.1E-10 82.9 8.6 27 24-50 29-55 (192)
114 2qag_B Septin-6, protein NEDD5 98.2 3.5E-06 1.2E-10 94.0 9.7 84 132-216 95-191 (427)
115 3cpj_B GTP-binding protein YPT 98.2 2.6E-06 9E-11 85.4 7.6 27 24-50 13-39 (223)
116 2x77_A ADP-ribosylation factor 98.2 2.9E-06 9.8E-11 82.3 7.5 28 23-50 21-48 (189)
117 3sop_A Neuronal-specific septi 98.2 7.5E-06 2.6E-10 86.0 11.1 26 26-51 4-29 (270)
118 1pui_A ENGB, probable GTP-bind 98.1 9.5E-06 3.2E-10 79.9 11.2 25 25-49 27-51 (210)
119 2qag_C Septin-7; cell cycle, c 98.1 9.7E-06 3.3E-10 90.4 12.5 81 132-216 88-182 (418)
120 3l0i_B RAS-related protein RAB 98.1 4.2E-07 1.4E-11 89.4 1.2 66 133-215 83-152 (199)
121 1lnz_A SPO0B-associated GTP-bi 98.1 9E-07 3.1E-11 96.2 3.8 25 24-48 158-182 (342)
122 2atx_A Small GTP binding prote 98.1 2.5E-06 8.7E-11 83.0 6.6 66 133-215 67-136 (194)
123 2atv_A RERG, RAS-like estrogen 98.1 1E-05 3.6E-10 79.0 10.7 28 23-50 27-54 (196)
124 2qag_A Septin-2, protein NEDD5 98.1 3.8E-06 1.3E-10 91.8 8.1 81 132-215 95-188 (361)
125 2gf0_A GTP-binding protein DI- 98.1 2.4E-06 8.3E-11 83.1 5.9 28 23-50 7-34 (199)
126 2fv8_A H6, RHO-related GTP-bin 98.1 1.7E-06 5.9E-11 85.7 4.8 26 25-50 26-51 (207)
127 1mh1_A RAC1; GTP-binding, GTPa 98.1 2.9E-06 1E-10 81.3 5.9 66 133-215 54-123 (186)
128 2q3h_A RAS homolog gene family 98.1 2.3E-06 7.7E-11 83.9 5.1 29 22-50 18-46 (201)
129 3tr5_A RF-3, peptide chain rel 98.1 7E-06 2.4E-10 94.2 9.3 73 124-214 75-147 (528)
130 2j1l_A RHO-related GTP-binding 98.0 3.4E-06 1.2E-10 84.2 5.6 66 133-215 83-152 (214)
131 2gco_A H9, RHO-related GTP-bin 98.0 3.3E-06 1.1E-10 83.2 5.5 66 133-215 74-143 (201)
132 3izy_P Translation initiation 98.0 1.6E-06 5.4E-11 99.6 3.5 114 24-214 4-117 (537)
133 3geh_A MNME, tRNA modification 98.0 2.5E-06 8.5E-11 96.3 5.0 72 133-215 273-344 (462)
134 3c5c_A RAS-like protein 12; GD 98.0 1.2E-05 4E-10 78.4 8.4 26 25-50 22-47 (187)
135 2j0v_A RAC-like GTP-binding pr 98.0 4.6E-06 1.6E-10 82.5 5.1 65 133-214 58-126 (212)
136 3t1o_A Gliding protein MGLA; G 98.0 5.5E-05 1.9E-09 72.9 12.7 78 133-229 75-161 (198)
137 3cbq_A GTP-binding protein REM 98.0 1.3E-05 4.4E-10 79.0 8.2 28 23-50 22-49 (195)
138 3sjy_A Translation initiation 98.0 9.8E-06 3.3E-10 89.6 8.2 67 132-216 75-144 (403)
139 3bwd_D RAC-like GTP-binding pr 98.0 3.6E-06 1.2E-10 80.5 3.9 27 24-50 8-34 (182)
140 3j2k_7 ERF3, eukaryotic polype 98.0 1E-05 3.5E-10 90.6 8.1 82 117-215 81-169 (439)
141 2iwr_A Centaurin gamma 1; ANK 98.0 9.5E-06 3.2E-10 77.5 6.8 27 24-50 7-33 (178)
142 3reg_A RHO-like small GTPase; 97.9 3.4E-06 1.2E-10 82.3 3.3 28 23-50 22-49 (194)
143 4gzl_A RAS-related C3 botulinu 97.9 3.7E-06 1.3E-10 83.3 3.5 29 22-50 28-56 (204)
144 1m7b_A RND3/RHOE small GTP-bin 97.9 9.7E-06 3.3E-10 78.4 5.6 27 24-50 7-33 (184)
145 1mky_A Probable GTP-binding pr 97.9 1.9E-05 6.6E-10 88.2 8.7 28 23-50 179-206 (439)
146 3th5_A RAS-related C3 botulinu 97.1 1.7E-06 5.7E-11 85.3 0.0 27 24-50 30-56 (204)
147 2elf_A Protein translation elo 97.9 2.4E-05 8.1E-10 85.8 8.8 61 133-213 61-125 (370)
148 3gj0_A GTP-binding nuclear pro 97.9 3.9E-06 1.3E-10 83.8 2.3 66 133-215 65-133 (221)
149 1wb1_A Translation elongation 97.9 2.7E-05 9.2E-10 88.3 9.4 65 132-215 73-139 (482)
150 4a9a_A Ribosome-interacting GT 97.9 1.5E-05 5.1E-10 87.6 6.9 39 24-62 72-110 (376)
151 2h5e_A Peptide chain release f 97.9 4.2E-05 1.4E-09 87.7 10.9 73 125-215 76-148 (529)
152 3p26_A Elongation factor 1 alp 97.9 1.3E-05 4.4E-10 90.8 6.5 83 116-215 96-185 (483)
153 3o47_A ADP-ribosylation factor 97.9 1.9E-05 6.5E-10 85.0 7.5 66 133-215 210-280 (329)
154 3r7w_A Gtpase1, GTP-binding pr 97.8 3.8E-05 1.3E-09 81.7 9.7 71 132-215 52-129 (307)
155 3izq_1 HBS1P, elongation facto 97.8 3.2E-05 1.1E-09 90.1 9.9 27 22-48 165-191 (611)
156 1gwn_A RHO-related GTP-binding 97.8 1.3E-05 4.6E-10 79.7 5.5 26 25-50 29-54 (205)
157 4dkx_A RAS-related protein RAB 97.8 6.6E-05 2.3E-09 76.0 10.3 67 133-215 63-132 (216)
158 3q3j_B RHO-related GTP-binding 97.8 1.9E-05 6.4E-10 79.0 6.1 65 133-214 76-144 (214)
159 3dpu_A RAB family protein; roc 97.8 9.8E-05 3.4E-09 84.5 12.5 30 21-50 38-67 (535)
160 1s0u_A EIF-2-gamma, translatio 97.8 6.3E-05 2.2E-09 83.2 10.5 26 23-48 7-32 (408)
161 1zo1_I IF2, translation initia 97.8 6.9E-06 2.4E-10 93.5 2.7 28 23-50 3-30 (501)
162 2c78_A Elongation factor TU-A; 97.8 4.7E-05 1.6E-09 84.1 8.9 75 122-214 66-141 (405)
163 1zun_B Sulfate adenylate trans 97.8 7.6E-05 2.6E-09 83.3 10.6 65 132-215 104-171 (434)
164 3lvq_E ARF-GAP with SH3 domain 97.8 4.7E-05 1.6E-09 86.0 8.9 26 25-50 323-348 (497)
165 1g7s_A Translation initiation 97.7 1.4E-05 4.8E-10 92.9 4.7 28 23-50 4-31 (594)
166 2wkq_A NPH1-1, RAS-related C3 97.7 1.8E-05 6E-10 83.6 4.9 28 23-50 154-181 (332)
167 1wxq_A GTP-binding protein; st 97.7 2E-05 6.7E-10 87.3 5.4 39 26-64 2-40 (397)
168 1kk1_A EIF2gamma; initiation o 97.7 0.0001 3.6E-09 81.4 11.0 26 23-48 9-34 (410)
169 2ywe_A GTP-binding protein LEP 97.7 4.7E-05 1.6E-09 88.5 8.2 66 132-214 73-138 (600)
170 2xex_A Elongation factor G; GT 97.7 4.7E-05 1.6E-09 90.0 8.0 67 132-215 75-141 (693)
171 2zej_A Dardarin, leucine-rich 97.7 4.3E-05 1.5E-09 74.0 6.0 23 25-47 3-25 (184)
172 3ihw_A Centg3; RAS, centaurin, 97.7 5.5E-05 1.9E-09 73.6 6.6 29 22-50 18-46 (184)
173 1d2e_A Elongation factor TU (E 97.6 0.00011 3.7E-09 81.1 9.6 66 132-214 66-132 (397)
174 2f9l_A RAB11B, member RAS onco 97.6 9.8E-05 3.4E-09 72.4 7.9 27 24-50 5-31 (199)
175 2qnr_A Septin-2, protein NEDD5 97.6 0.00021 7.3E-09 75.9 10.4 25 26-50 20-45 (301)
176 1jny_A EF-1-alpha, elongation 97.6 0.00015 5.1E-09 80.9 9.3 72 125-215 78-158 (435)
177 1f60_A Elongation factor EEF1A 97.6 7.6E-05 2.6E-09 84.0 6.9 25 23-47 6-30 (458)
178 3ec1_A YQEH GTPase; atnos1, at 97.6 1.6E-05 5.6E-10 87.0 1.3 24 25-48 163-186 (369)
179 1oix_A RAS-related protein RAB 97.5 0.00015 5E-09 71.0 7.8 26 25-50 30-55 (191)
180 3h2y_A GTPase family protein; 97.5 3.5E-05 1.2E-09 84.4 3.2 24 25-48 161-184 (368)
181 1n0u_A EF-2, elongation factor 97.5 0.00013 4.4E-09 88.1 8.3 66 132-214 98-163 (842)
182 3cb4_D GTP-binding protein LEP 97.5 9.8E-05 3.3E-09 85.9 7.0 67 132-215 71-137 (599)
183 2rdo_7 EF-G, elongation factor 97.5 0.00027 9.2E-09 83.7 10.8 67 132-215 82-148 (704)
184 3dm5_A SRP54, signal recogniti 97.4 0.0022 7.7E-08 71.7 16.7 70 132-214 183-252 (443)
185 2g3y_A GTP-binding protein GEM 97.4 0.00044 1.5E-08 69.5 9.6 27 23-49 36-62 (211)
186 1dar_A EF-G, elongation factor 97.4 0.0002 6.8E-09 84.7 8.1 67 132-215 77-143 (691)
187 3mca_A HBS1, elongation factor 97.4 1.7E-05 5.9E-10 92.1 -1.2 25 24-48 177-201 (592)
188 2j37_W Signal recognition part 97.4 0.00098 3.3E-08 75.9 13.2 27 26-52 103-135 (504)
189 1tq4_A IIGP1, interferon-induc 97.3 0.00046 1.6E-08 76.8 8.7 71 129-214 117-188 (413)
190 3p32_A Probable GTPase RV1496/ 97.3 0.00038 1.3E-08 75.5 7.8 24 23-46 78-101 (355)
191 1r5b_A Eukaryotic peptide chai 97.2 0.00017 5.8E-09 81.4 4.8 23 24-46 43-65 (467)
192 3avx_A Elongation factor TS, e 97.2 0.0004 1.4E-08 85.5 7.8 66 131-215 358-426 (1289)
193 2dy1_A Elongation factor G; tr 97.1 0.0012 4E-08 77.8 10.2 66 132-214 74-139 (665)
194 2dby_A GTP-binding protein; GD 97.1 0.00075 2.6E-08 73.9 7.7 38 25-62 2-39 (368)
195 2cjw_A GTP-binding protein GEM 97.1 0.00072 2.5E-08 66.1 6.6 25 24-48 6-30 (192)
196 2ohf_A Protein OLA1, GTP-bindi 97.0 0.00069 2.4E-08 74.9 6.7 37 25-61 23-59 (396)
197 1jal_A YCHF protein; nucleotid 97.0 0.00051 1.8E-08 75.1 5.2 26 25-50 3-28 (363)
198 1yrb_A ATP(GTP)binding protein 97.0 0.0056 1.9E-07 62.3 12.6 32 21-52 11-47 (262)
199 3kl4_A SRP54, signal recogniti 96.9 0.00073 2.5E-08 75.6 5.7 73 131-214 179-251 (433)
200 2yhs_A FTSY, cell division pro 96.5 0.0021 7.2E-08 72.9 5.9 71 133-214 377-451 (503)
201 2xxa_A Signal recognition part 96.4 0.028 9.5E-07 62.8 13.9 70 132-214 184-253 (433)
202 2v3c_C SRP54, signal recogniti 96.3 0.0037 1.3E-07 69.8 6.5 70 131-214 180-251 (432)
203 1udx_A The GTP-binding protein 96.3 0.0083 2.8E-07 66.7 9.3 24 25-48 158-181 (416)
204 1vma_A Cell division protein F 96.2 0.0012 4.2E-08 70.4 1.7 24 25-48 104-128 (306)
205 3vqt_A RF-3, peptide chain rel 96.2 0.0056 1.9E-07 70.4 7.1 72 125-214 94-165 (548)
206 3r7w_B Gtpase2, GTP-binding pr 96.1 0.029 1E-06 60.4 11.5 70 132-215 46-120 (331)
207 1rj9_A FTSY, signal recognitio 96.0 0.029 9.9E-07 59.6 11.0 25 26-50 104-128 (304)
208 3e70_C DPA, signal recognition 95.8 0.022 7.6E-07 61.2 9.3 69 133-214 213-281 (328)
209 1j8m_F SRP54, signal recogniti 95.7 0.058 2E-06 57.1 11.8 72 132-214 181-252 (297)
210 4fn5_A EF-G 1, elongation fact 95.4 0.022 7.6E-07 67.4 8.0 82 117-215 66-151 (709)
211 3j25_A Tetracycline resistance 95.0 0.01 3.5E-07 69.4 3.4 67 132-215 67-133 (638)
212 1puj_A YLQF, conserved hypothe 95.0 0.029 9.9E-07 58.9 6.5 29 24-52 120-148 (282)
213 1zu4_A FTSY; GTPase, signal re 94.9 0.14 4.9E-06 54.7 11.7 75 132-214 192-267 (320)
214 2px0_A Flagellar biosynthesis 94.9 0.026 8.8E-07 59.7 5.7 25 26-50 107-131 (296)
215 2ffh_A Protein (FFH); SRP54, s 94.8 0.02 7E-07 63.7 4.8 70 132-214 181-250 (425)
216 3ljb_A Interferon-induced GTP- 94.4 0.31 1E-05 51.0 12.5 98 444-552 65-167 (271)
217 1ni3_A YCHF GTPase, YCHF GTP-b 94.1 0.025 8.5E-07 62.4 3.5 39 24-62 20-59 (392)
218 1ls1_A Signal recognition part 94.0 0.034 1.2E-06 58.7 4.2 71 131-214 180-250 (295)
219 2og2_A Putative signal recogni 93.5 0.29 1E-05 53.2 10.5 26 25-50 157-183 (359)
220 3cnl_A YLQF, putative uncharac 93.5 0.062 2.1E-06 55.8 5.0 26 25-50 100-125 (262)
221 1f5n_A Interferon-induced guan 93.3 0.039 1.3E-06 64.0 3.5 40 516-555 383-422 (592)
222 2www_A Methylmalonic aciduria 93.2 0.05 1.7E-06 58.8 3.8 30 21-50 71-100 (349)
223 2wsm_A Hydrogenase expression/ 92.8 0.048 1.6E-06 53.7 2.9 26 23-48 29-54 (221)
224 2hf9_A Probable hydrogenase ni 92.0 0.082 2.8E-06 52.2 3.4 28 23-50 37-64 (226)
225 2pcj_A ABC transporter, lipopr 91.8 0.08 2.7E-06 53.5 3.1 24 27-50 33-56 (224)
226 1u0l_A Probable GTPase ENGC; p 91.8 0.075 2.6E-06 56.0 2.9 26 26-51 171-196 (301)
227 3tif_A Uncharacterized ABC tra 91.6 0.083 2.9E-06 53.8 3.0 26 26-51 33-58 (235)
228 3kta_A Chromosome segregation 91.4 0.075 2.6E-06 50.8 2.3 26 25-50 27-52 (182)
229 1s96_A Guanylate kinase, GMP k 91.4 0.078 2.7E-06 53.5 2.5 23 26-48 18-40 (219)
230 1mv5_A LMRA, multidrug resista 91.4 0.1 3.4E-06 53.4 3.3 25 26-50 30-54 (243)
231 3c5h_A Glucocorticoid receptor 91.3 0.11 3.9E-06 53.0 3.7 27 21-47 16-51 (255)
232 3q5d_A Atlastin-1; G protein, 91.3 0.11 3.8E-06 58.2 3.7 25 23-47 66-90 (447)
233 1t9h_A YLOQ, probable GTPase E 91.2 0.049 1.7E-06 58.0 0.8 25 26-50 175-199 (307)
234 2onk_A Molybdate/tungstate ABC 91.2 0.099 3.4E-06 53.5 3.0 25 26-50 26-50 (240)
235 1znw_A Guanylate kinase, GMP k 91.1 0.079 2.7E-06 52.3 2.2 22 27-48 23-44 (207)
236 1kgd_A CASK, peripheral plasma 91.1 0.081 2.8E-06 51.1 2.2 22 26-47 7-28 (180)
237 1lvg_A Guanylate kinase, GMP k 91.1 0.08 2.7E-06 52.1 2.2 22 26-47 6-27 (198)
238 2pjz_A Hypothetical protein ST 91.1 0.1 3.4E-06 54.3 3.0 30 21-52 27-57 (263)
239 1sgw_A Putative ABC transporte 91.0 0.11 3.6E-06 52.5 3.0 24 27-50 38-61 (214)
240 2cbz_A Multidrug resistance-as 91.0 0.11 3.8E-06 52.9 3.1 25 26-50 33-57 (237)
241 2rcn_A Probable GTPase ENGC; Y 90.8 0.11 3.8E-06 56.5 3.2 24 26-49 217-240 (358)
242 2ff7_A Alpha-hemolysin translo 90.8 0.11 3.8E-06 53.3 3.0 25 26-50 37-61 (247)
243 4g1u_C Hemin import ATP-bindin 90.7 0.12 4E-06 53.8 3.1 25 26-50 39-63 (266)
244 2pze_A Cystic fibrosis transme 90.7 0.12 4E-06 52.5 3.0 25 26-50 36-60 (229)
245 1g6h_A High-affinity branched- 90.7 0.11 3.9E-06 53.4 3.0 24 27-50 36-59 (257)
246 1b0u_A Histidine permease; ABC 90.7 0.12 3.9E-06 53.7 3.0 24 27-50 35-58 (262)
247 1htw_A HI0065; nucleotide-bind 90.6 0.093 3.2E-06 50.3 2.0 24 27-51 36-59 (158)
248 1ji0_A ABC transporter; ATP bi 90.5 0.12 4.2E-06 52.7 3.0 24 27-50 35-58 (240)
249 1zp6_A Hypothetical protein AT 90.4 0.14 4.7E-06 49.2 3.1 22 26-47 11-32 (191)
250 3tr0_A Guanylate kinase, GMP k 90.3 0.1 3.6E-06 50.6 2.2 22 26-47 9-30 (205)
251 1vpl_A ABC transporter, ATP-bi 90.3 0.13 4.5E-06 53.1 3.0 24 27-50 44-67 (256)
252 3gfo_A Cobalt import ATP-bindi 90.2 0.13 4.5E-06 53.7 3.0 24 27-50 37-60 (275)
253 2bbw_A Adenylate kinase 4, AK4 90.2 0.12 4.2E-06 52.2 2.7 27 25-51 28-57 (246)
254 2olj_A Amino acid ABC transpor 90.1 0.14 4.6E-06 53.3 3.0 24 27-50 53-76 (263)
255 3c8u_A Fructokinase; YP_612366 90.1 0.11 3.7E-06 51.3 2.1 25 26-50 24-48 (208)
256 2ixe_A Antigen peptide transpo 90.1 0.14 4.6E-06 53.4 3.0 25 26-50 47-71 (271)
257 2yz2_A Putative ABC transporte 90.1 0.14 4.7E-06 53.2 3.0 24 27-50 36-59 (266)
258 1ex7_A Guanylate kinase; subst 90.1 0.13 4.3E-06 50.9 2.5 20 27-46 4-23 (186)
259 3a00_A Guanylate kinase, GMP k 90.0 0.11 3.9E-06 50.2 2.1 22 27-48 4-25 (186)
260 2nq2_C Hypothetical ABC transp 89.9 0.15 5E-06 52.6 3.0 30 27-58 34-63 (253)
261 2qi9_C Vitamin B12 import ATP- 89.8 0.15 5.2E-06 52.5 3.0 25 26-50 28-52 (249)
262 3b85_A Phosphate starvation-in 89.7 0.085 2.9E-06 52.8 1.0 30 26-58 24-53 (208)
263 2zu0_C Probable ATP-dependent 89.6 0.14 4.9E-06 53.1 2.7 23 26-48 48-70 (267)
264 1z6g_A Guanylate kinase; struc 89.5 0.13 4.4E-06 51.4 2.2 22 27-48 26-47 (218)
265 2ihy_A ABC transporter, ATP-bi 89.5 0.16 5.5E-06 53.2 3.0 24 27-50 50-73 (279)
266 1np6_A Molybdopterin-guanine d 89.4 0.16 5.6E-06 49.4 2.7 24 24-47 6-29 (174)
267 3tau_A Guanylate kinase, GMP k 89.4 0.19 6.5E-06 49.7 3.2 22 26-47 10-31 (208)
268 2d2e_A SUFC protein; ABC-ATPas 89.4 0.18 6.2E-06 51.7 3.1 23 26-48 31-53 (250)
269 2ghi_A Transport protein; mult 89.3 0.16 5.6E-06 52.4 2.8 23 26-48 48-70 (260)
270 1ye8_A Protein THEP1, hypothet 89.2 0.15 5.3E-06 49.5 2.4 23 26-48 2-24 (178)
271 2pt7_A CAG-ALFA; ATPase, prote 89.1 0.18 6.1E-06 54.1 3.0 25 26-50 173-197 (330)
272 2bbs_A Cystic fibrosis transme 89.1 0.19 6.7E-06 52.9 3.2 25 26-50 66-90 (290)
273 4e22_A Cytidylate kinase; P-lo 88.9 0.19 6.3E-06 51.4 2.8 27 25-51 28-57 (252)
274 3asz_A Uridine kinase; cytidin 88.6 0.17 5.9E-06 49.5 2.3 22 26-47 8-29 (211)
275 2gza_A Type IV secretion syste 88.5 0.24 8.1E-06 53.7 3.5 23 26-48 177-199 (361)
276 1f2t_A RAD50 ABC-ATPase; DNA d 88.3 0.24 8.3E-06 46.6 3.0 24 23-46 22-45 (149)
277 3ney_A 55 kDa erythrocyte memb 88.3 0.18 6.2E-06 50.2 2.2 23 25-47 20-42 (197)
278 2j41_A Guanylate kinase; GMP, 88.2 0.2 6.7E-06 48.6 2.3 25 26-50 8-32 (207)
279 2yv5_A YJEQ protein; hydrolase 88.1 0.24 8.3E-06 52.2 3.2 24 26-50 167-190 (302)
280 3nh6_A ATP-binding cassette SU 88.1 0.18 6E-06 53.7 2.1 26 26-51 82-107 (306)
281 2f1r_A Molybdopterin-guanine d 88.0 0.14 4.7E-06 49.7 1.1 26 25-50 3-28 (171)
282 2eyu_A Twitching motility prot 87.7 0.2 6.7E-06 51.9 2.2 25 26-50 27-51 (261)
283 3ec2_A DNA replication protein 87.6 0.25 8.5E-06 47.2 2.6 45 4-50 19-64 (180)
284 2qor_A Guanylate kinase; phosp 87.5 0.22 7.6E-06 48.8 2.3 22 25-46 13-34 (204)
285 3fvq_A Fe(3+) IONS import ATP- 87.5 0.27 9.2E-06 53.5 3.1 25 27-51 33-57 (359)
286 1z47_A CYSA, putative ABC-tran 87.4 0.26 9E-06 53.5 3.0 25 26-50 43-67 (355)
287 1kag_A SKI, shikimate kinase I 87.4 0.23 7.7E-06 46.9 2.2 22 26-47 6-27 (173)
288 2it1_A 362AA long hypothetical 87.2 0.28 9.4E-06 53.4 3.0 24 27-50 32-55 (362)
289 2v9p_A Replication protein E1; 87.1 0.19 6.4E-06 53.5 1.6 23 26-48 128-150 (305)
290 2yyz_A Sugar ABC transporter, 87.1 0.28 9.6E-06 53.3 3.0 24 27-50 32-55 (359)
291 4gp7_A Metallophosphoesterase; 87.0 0.28 9.7E-06 46.9 2.6 20 27-46 12-31 (171)
292 4a74_A DNA repair and recombin 86.9 0.29 9.8E-06 48.1 2.7 33 21-53 21-54 (231)
293 1g29_1 MALK, maltose transport 86.9 0.29 1E-05 53.4 3.0 24 27-50 32-55 (372)
294 3lnc_A Guanylate kinase, GMP k 86.8 0.21 7.2E-06 49.9 1.7 22 26-47 29-51 (231)
295 3tui_C Methionine import ATP-b 86.6 0.31 1.1E-05 53.1 3.0 25 27-51 57-81 (366)
296 2oap_1 GSPE-2, type II secreti 86.5 0.31 1.1E-05 55.4 3.1 30 27-58 263-292 (511)
297 1v43_A Sugar-binding transport 86.5 0.32 1.1E-05 53.2 3.0 24 27-50 40-63 (372)
298 3d31_A Sulfate/molybdate ABC t 86.5 0.25 8.5E-06 53.5 2.1 25 26-50 28-52 (348)
299 3qf7_A RAD50; ABC-ATPase, ATPa 86.4 0.32 1.1E-05 52.7 3.0 26 21-46 20-45 (365)
300 2vp4_A Deoxynucleoside kinase; 86.4 0.24 8.3E-06 49.7 1.9 22 26-47 22-43 (230)
301 4eun_A Thermoresistant glucoki 86.3 0.28 9.5E-06 47.9 2.2 22 26-47 31-52 (200)
302 3jvv_A Twitching mobility prot 86.2 0.19 6.6E-06 54.5 1.1 25 26-50 125-149 (356)
303 2bdt_A BH3686; alpha-beta prot 86.2 0.28 9.6E-06 47.1 2.2 20 27-46 5-24 (189)
304 3rlf_A Maltose/maltodextrin im 86.0 0.35 1.2E-05 53.0 3.0 25 27-51 32-56 (381)
305 1knq_A Gluconate kinase; ALFA/ 85.8 0.31 1.1E-05 46.2 2.2 21 26-46 10-30 (175)
306 2qm8_A GTPase/ATPase; G protei 85.8 0.29 9.8E-06 52.5 2.2 27 24-50 55-81 (337)
307 1nij_A Hypothetical protein YJ 85.5 0.31 1.1E-05 51.7 2.3 26 23-48 3-28 (318)
308 3aez_A Pantothenate kinase; tr 85.4 0.31 1.1E-05 51.8 2.2 29 22-50 87-116 (312)
309 1cke_A CK, MSSA, protein (cyti 85.1 0.21 7.3E-06 49.3 0.7 35 25-59 6-41 (227)
310 1oxx_K GLCV, glucose, ABC tran 85.0 0.26 8.9E-06 53.4 1.4 25 26-50 33-57 (353)
311 1jjv_A Dephospho-COA kinase; P 84.8 0.37 1.3E-05 47.0 2.3 25 26-50 4-28 (206)
312 1xjc_A MOBB protein homolog; s 84.8 0.43 1.5E-05 46.4 2.7 24 24-47 4-27 (169)
313 3kb2_A SPBC2 prophage-derived 84.4 0.46 1.6E-05 44.3 2.6 22 25-46 2-23 (173)
314 2i3b_A HCR-ntpase, human cance 84.3 0.38 1.3E-05 47.3 2.1 23 26-48 3-25 (189)
315 3gd7_A Fusion complex of cysti 84.3 0.47 1.6E-05 52.1 3.1 23 26-48 49-71 (390)
316 2qt1_A Nicotinamide riboside k 84.3 0.52 1.8E-05 46.0 3.1 28 20-47 16-44 (207)
317 1lw7_A Transcriptional regulat 84.1 0.37 1.3E-05 51.9 2.1 25 26-50 172-196 (365)
318 3uie_A Adenylyl-sulfate kinase 84.1 0.4 1.4E-05 46.7 2.2 23 26-48 27-49 (200)
319 3qks_A DNA double-strand break 84.0 0.52 1.8E-05 46.6 3.0 24 22-45 21-44 (203)
320 2if2_A Dephospho-COA kinase; a 83.9 0.47 1.6E-05 46.1 2.6 25 26-50 3-27 (204)
321 2npi_A Protein CLP1; CLP1-PCF1 83.4 0.39 1.3E-05 53.9 2.0 26 25-50 139-164 (460)
322 3lw7_A Adenylate kinase relate 83.4 0.59 2E-05 43.3 2.9 20 25-44 2-21 (179)
323 1p9r_A General secretion pathw 83.3 0.42 1.4E-05 52.9 2.2 25 26-50 169-193 (418)
324 2jeo_A Uridine-cytidine kinase 83.2 0.45 1.5E-05 48.1 2.2 26 22-47 22-48 (245)
325 1rz3_A Hypothetical protein rb 83.0 0.49 1.7E-05 46.3 2.3 26 22-47 19-45 (201)
326 1sq5_A Pantothenate kinase; P- 83.0 0.48 1.6E-05 50.0 2.3 25 23-47 78-103 (308)
327 2ewv_A Twitching motility prot 82.8 0.46 1.6E-05 51.7 2.2 25 26-50 138-162 (372)
328 2p67_A LAO/AO transport system 82.6 0.53 1.8E-05 50.4 2.5 27 23-49 55-81 (341)
329 2kjq_A DNAA-related protein; s 82.3 0.45 1.5E-05 44.7 1.7 28 23-50 35-62 (149)
330 3qkt_A DNA double-strand break 82.3 0.53 1.8E-05 50.2 2.4 22 25-46 24-45 (339)
331 1yqt_A RNAse L inhibitor; ATP- 82.3 0.63 2.2E-05 53.2 3.2 25 26-50 49-73 (538)
332 3auy_A DNA double-strand break 82.1 0.61 2.1E-05 50.4 2.8 24 22-45 23-46 (371)
333 3t61_A Gluconokinase; PSI-biol 81.7 0.57 2E-05 45.5 2.2 22 25-46 19-40 (202)
334 4aby_A DNA repair protein RECN 81.4 0.29 9.9E-06 53.3 -0.1 26 25-50 61-86 (415)
335 3b60_A Lipid A export ATP-bind 81.4 0.7 2.4E-05 53.1 3.1 25 26-50 371-395 (582)
336 1yqt_A RNAse L inhibitor; ATP- 81.3 0.75 2.6E-05 52.5 3.3 25 26-50 314-338 (538)
337 3ozx_A RNAse L inhibitor; ATP 81.1 0.78 2.7E-05 52.5 3.3 25 26-50 296-320 (538)
338 3b5x_A Lipid A export ATP-bind 80.9 0.68 2.3E-05 53.3 2.8 25 26-50 371-395 (582)
339 1gvn_B Zeta; postsegregational 80.8 1.5 5E-05 45.8 5.1 42 3-46 11-55 (287)
340 2o5v_A DNA replication and rep 80.8 0.6 2.1E-05 50.7 2.2 27 22-48 24-50 (359)
341 2jaq_A Deoxyguanosine kinase; 80.7 0.84 2.9E-05 43.8 3.0 21 26-46 2-22 (205)
342 3bk7_A ABC transporter ATP-bin 80.7 0.76 2.6E-05 53.4 3.1 26 26-51 119-144 (607)
343 2ehv_A Hypothetical protein PH 80.7 0.64 2.2E-05 46.2 2.2 24 26-49 32-55 (251)
344 3bk7_A ABC transporter ATP-bin 80.6 0.82 2.8E-05 53.1 3.3 25 26-50 384-408 (607)
345 3iij_A Coilin-interacting nucl 80.5 0.84 2.9E-05 43.4 2.9 27 24-50 11-40 (180)
346 1gtv_A TMK, thymidylate kinase 80.4 0.56 1.9E-05 45.7 1.6 21 26-46 2-22 (214)
347 3ozx_A RNAse L inhibitor; ATP 80.3 0.82 2.8E-05 52.3 3.1 30 21-50 18-51 (538)
348 3cm0_A Adenylate kinase; ATP-b 80.3 0.87 3E-05 43.3 2.9 25 26-50 6-33 (186)
349 1ixz_A ATP-dependent metallopr 80.3 0.94 3.2E-05 45.6 3.3 26 22-47 46-72 (254)
350 3j16_B RLI1P; ribosome recycli 80.2 0.81 2.8E-05 53.1 3.2 25 26-50 105-129 (608)
351 2yl4_A ATP-binding cassette SU 80.2 0.7 2.4E-05 53.3 2.6 25 26-50 372-396 (595)
352 1e69_A Chromosome segregation 80.1 0.84 2.9E-05 48.3 3.0 23 25-47 25-47 (322)
353 3trf_A Shikimate kinase, SK; a 80.0 1 3.5E-05 42.8 3.3 26 24-49 5-33 (185)
354 3tqc_A Pantothenate kinase; bi 80.0 1.4 5E-05 46.9 4.8 40 8-47 73-115 (321)
355 1nks_A Adenylate kinase; therm 80.0 0.87 3E-05 43.2 2.8 21 26-46 3-23 (194)
356 3euj_A Chromosome partition pr 80.0 0.56 1.9E-05 53.0 1.6 25 26-50 31-55 (483)
357 1ly1_A Polynucleotide kinase; 80.0 0.84 2.9E-05 42.8 2.7 21 26-46 4-24 (181)
358 3qf4_B Uncharacterized ABC tra 79.9 0.74 2.5E-05 53.2 2.7 26 26-51 383-408 (598)
359 4ido_A Atlastin-1; GTPase, GTP 79.7 1.1 3.8E-05 50.2 3.8 20 26-45 69-88 (457)
360 1w1w_A Structural maintenance 79.6 0.68 2.3E-05 51.0 2.2 25 26-50 28-52 (430)
361 1kht_A Adenylate kinase; phosp 79.4 0.89 3E-05 43.1 2.7 21 26-46 5-25 (192)
362 4a82_A Cystic fibrosis transme 79.0 0.71 2.4E-05 53.1 2.1 26 26-51 369-394 (578)
363 3vaa_A Shikimate kinase, SK; s 79.0 0.79 2.7E-05 44.6 2.2 21 26-46 27-47 (199)
364 1qhx_A CPT, protein (chloramph 79.0 0.94 3.2E-05 42.7 2.7 21 26-46 5-25 (178)
365 1qhl_A Protein (cell division 78.8 0.25 8.4E-06 50.3 -1.6 24 27-50 30-53 (227)
366 1iy2_A ATP-dependent metallopr 78.8 1.1 3.8E-05 45.9 3.4 22 26-47 75-96 (278)
367 1odf_A YGR205W, hypothetical 3 78.6 1.9 6.6E-05 45.1 5.2 23 26-48 33-55 (290)
368 3b9q_A Chloroplast SRP recepto 78.5 0.8 2.7E-05 48.4 2.2 26 25-50 100-126 (302)
369 1y63_A LMAJ004144AAA protein; 78.4 0.53 1.8E-05 45.3 0.7 34 25-58 11-46 (184)
370 3qf4_A ABC transporter, ATP-bi 78.3 0.83 2.8E-05 52.7 2.4 25 26-50 371-395 (587)
371 2w58_A DNAI, primosome compone 78.2 2.6 8.8E-05 40.6 5.6 43 6-48 36-78 (202)
372 2rhm_A Putative kinase; P-loop 78.1 1.1 3.6E-05 42.8 2.8 20 26-45 7-26 (193)
373 2v54_A DTMP kinase, thymidylat 78.0 1 3.5E-05 43.4 2.7 22 26-47 6-27 (204)
374 2iyv_A Shikimate kinase, SK; t 78.0 1.1 3.8E-05 42.6 2.9 25 25-49 3-30 (184)
375 2pez_A Bifunctional 3'-phospho 77.8 0.91 3.1E-05 43.1 2.2 22 26-47 7-28 (179)
376 2z0h_A DTMP kinase, thymidylat 77.0 1.1 3.9E-05 42.7 2.6 21 26-46 2-22 (197)
377 2plr_A DTMP kinase, probable t 76.9 1.1 3.9E-05 43.1 2.7 21 26-46 6-26 (213)
378 1lv7_A FTSH; alpha/beta domain 76.6 1.2 4E-05 45.0 2.7 22 26-47 47-68 (257)
379 3j16_B RLI1P; ribosome recycli 76.5 1.3 4.3E-05 51.5 3.3 27 27-53 381-407 (608)
380 2chg_A Replication factor C sm 76.4 2 6.9E-05 41.0 4.2 37 7-47 25-61 (226)
381 1nn5_A Similar to deoxythymidy 76.2 1.3 4.4E-05 43.0 2.8 21 26-46 11-31 (215)
382 2w0m_A SSO2452; RECA, SSPF, un 75.7 1.1 3.8E-05 43.7 2.2 25 26-50 25-49 (235)
383 2wwf_A Thymidilate kinase, put 75.5 1.4 4.7E-05 42.7 2.8 21 26-46 12-32 (212)
384 3bos_A Putative DNA replicatio 75.5 2.8 9.5E-05 40.9 5.0 38 6-47 38-75 (242)
385 2yvu_A Probable adenylyl-sulfa 75.4 1.2 4E-05 42.7 2.2 22 26-47 15-36 (186)
386 1via_A Shikimate kinase; struc 75.3 1.4 4.7E-05 41.7 2.6 22 25-46 5-26 (175)
387 1vht_A Dephospho-COA kinase; s 75.2 1.3 4.3E-05 43.6 2.4 22 26-47 6-27 (218)
388 1jbk_A CLPB protein; beta barr 75.2 3.2 0.00011 38.5 5.2 24 24-47 43-66 (195)
389 2c95_A Adenylate kinase 1; tra 75.1 1.6 5.5E-05 41.6 3.1 21 25-45 10-30 (196)
390 2pbr_A DTMP kinase, thymidylat 74.6 1.5 5E-05 41.7 2.6 21 26-46 2-22 (195)
391 3fb4_A Adenylate kinase; psych 74.2 1.6 5.4E-05 42.7 2.9 20 26-45 2-21 (216)
392 2vli_A Antibiotic resistance p 73.5 1.4 4.7E-05 41.6 2.2 20 26-45 7-26 (183)
393 1cr0_A DNA primase/helicase; R 73.2 1.4 4.8E-05 45.5 2.3 25 26-50 37-61 (296)
394 2iw3_A Elongation factor 3A; a 73.0 1.1 3.8E-05 54.8 1.6 26 26-51 701-726 (986)
395 3dl0_A Adenylate kinase; phosp 73.0 1.8 6E-05 42.4 2.9 34 26-59 2-36 (216)
396 1qf9_A UMP/CMP kinase, protein 72.6 1.8 6.2E-05 40.9 2.8 20 26-45 8-27 (194)
397 1e6c_A Shikimate kinase; phosp 72.5 1.7 6E-05 40.5 2.6 25 25-49 3-30 (173)
398 2pt5_A Shikimate kinase, SK; a 72.2 1.8 6.2E-05 40.3 2.6 21 26-46 2-22 (168)
399 1tev_A UMP-CMP kinase; ploop, 72.2 1.8 6.2E-05 41.0 2.7 20 26-45 5-24 (196)
400 2bwj_A Adenylate kinase 5; pho 72.0 2.1 7.2E-05 40.8 3.1 22 25-46 13-34 (199)
401 1zuh_A Shikimate kinase; alpha 71.7 2.4 8.1E-05 39.7 3.3 28 22-49 5-35 (168)
402 1uf9_A TT1252 protein; P-loop, 71.7 2 6.7E-05 41.2 2.8 22 26-47 10-31 (203)
403 2fna_A Conserved hypothetical 71.6 3.2 0.00011 43.1 4.6 22 25-46 31-52 (357)
404 3ake_A Cytidylate kinase; CMP 71.6 1.8 6.2E-05 41.6 2.5 22 25-46 3-24 (208)
405 2x8a_A Nuclear valosin-contain 71.5 2.3 7.9E-05 43.9 3.5 26 22-47 41-67 (274)
406 1q3t_A Cytidylate kinase; nucl 71.0 2.1 7.1E-05 42.8 2.9 27 24-50 16-45 (236)
407 3m6a_A ATP-dependent protease 70.9 3.6 0.00012 46.8 5.2 46 2-48 87-132 (543)
408 1sxj_E Activator 1 40 kDa subu 70.8 1.6 5.6E-05 45.9 2.2 26 22-47 34-59 (354)
409 1sxj_C Activator 1 40 kDa subu 70.5 2.7 9.1E-05 44.4 3.7 28 23-50 45-72 (340)
410 1m7g_A Adenylylsulfate kinase; 70.5 1.8 6E-05 42.5 2.2 22 26-47 27-48 (211)
411 1in4_A RUVB, holliday junction 70.4 1.8 6.2E-05 45.8 2.4 25 23-47 50-74 (334)
412 3nwj_A ATSK2; P loop, shikimat 70.3 1.7 5.9E-05 44.5 2.2 23 24-46 48-70 (250)
413 2p5t_B PEZT; postsegregational 70.1 3.1 0.00011 42.1 4.0 26 21-46 28-54 (253)
414 1zak_A Adenylate kinase; ATP:A 70.0 2.2 7.5E-05 42.0 2.8 21 25-45 6-26 (222)
415 1svm_A Large T antigen; AAA+ f 70.0 1.7 5.9E-05 47.4 2.2 28 20-47 164-192 (377)
416 1ukz_A Uridylate kinase; trans 70.0 2.1 7.3E-05 41.3 2.6 20 26-45 17-36 (203)
417 3r20_A Cytidylate kinase; stru 69.9 2 6.8E-05 43.7 2.5 25 26-50 11-38 (233)
418 1zd8_A GTP:AMP phosphotransfer 69.9 2.4 8.4E-05 41.9 3.1 21 25-45 8-28 (227)
419 1e4v_A Adenylate kinase; trans 69.3 2.5 8.5E-05 41.4 3.0 21 26-46 2-22 (214)
420 2cdn_A Adenylate kinase; phosp 69.1 2.3 7.9E-05 41.1 2.7 21 26-46 22-42 (201)
421 1fnn_A CDC6P, cell division co 68.7 4.3 0.00015 42.8 5.0 26 23-48 43-68 (389)
422 4f4c_A Multidrug resistance pr 68.4 2.3 7.8E-05 53.8 3.1 27 26-52 446-472 (1321)
423 1n0w_A DNA repair protein RAD5 68.3 2.1 7.1E-05 42.2 2.2 27 21-47 20-47 (243)
424 2cvh_A DNA repair and recombin 68.2 2.1 7.2E-05 41.5 2.2 26 21-46 16-42 (220)
425 2p65_A Hypothetical protein PF 68.1 4.7 0.00016 37.3 4.6 24 24-47 43-66 (187)
426 3a4m_A L-seryl-tRNA(SEC) kinas 67.7 2.4 8.3E-05 43.2 2.6 22 25-46 5-26 (260)
427 2grj_A Dephospho-COA kinase; T 67.7 2.7 9.3E-05 41.2 2.9 27 20-46 8-34 (192)
428 2ze6_A Isopentenyl transferase 67.6 2.1 7.3E-05 43.5 2.2 21 26-46 3-23 (253)
429 2ius_A DNA translocase FTSK; n 67.2 2.3 7.9E-05 48.3 2.5 23 24-46 167-189 (512)
430 4f4c_A Multidrug resistance pr 66.6 2.3 7.7E-05 53.8 2.5 25 26-50 1107-1131(1321)
431 4ad8_A DNA repair protein RECN 66.6 1.1 3.7E-05 50.7 -0.4 23 25-47 61-83 (517)
432 2dpy_A FLII, flagellum-specifi 66.4 2.5 8.5E-05 47.0 2.5 25 26-50 159-183 (438)
433 2xb4_A Adenylate kinase; ATP-b 66.3 2.8 9.5E-05 41.6 2.7 20 26-45 2-21 (223)
434 2ga8_A Hypothetical 39.9 kDa p 66.1 5.6 0.00019 43.1 5.1 25 23-47 23-47 (359)
435 3thx_A DNA mismatch repair pro 66.1 22 0.00076 43.2 10.9 26 26-51 664-697 (934)
436 1njg_A DNA polymerase III subu 66.0 4.2 0.00014 39.0 3.9 21 26-46 47-67 (250)
437 4eaq_A DTMP kinase, thymidylat 65.2 3 0.0001 41.9 2.7 22 26-47 28-49 (229)
438 2obl_A ESCN; ATPase, hydrolase 65.2 2.8 9.5E-05 45.1 2.5 25 26-50 73-97 (347)
439 1aky_A Adenylate kinase; ATP:A 65.1 3.4 0.00012 40.6 3.0 22 25-46 5-26 (220)
440 3cr8_A Sulfate adenylyltranfer 65.1 2 6.8E-05 49.3 1.5 25 26-50 371-395 (552)
441 3g5u_A MCG1178, multidrug resi 64.6 2.8 9.4E-05 52.9 2.7 25 26-50 418-442 (1284)
442 2ce7_A Cell division protein F 64.2 4.5 0.00015 45.5 4.1 24 23-46 47-71 (476)
443 2qby_A CDC6 homolog 1, cell di 63.3 5 0.00017 42.0 4.1 25 24-48 45-69 (386)
444 1nlf_A Regulatory protein REPA 63.2 3 0.0001 42.7 2.3 21 26-46 32-52 (279)
445 3be4_A Adenylate kinase; malar 63.1 3.6 0.00012 40.4 2.8 25 25-49 6-33 (217)
446 3tlx_A Adenylate kinase 2; str 62.2 3.6 0.00012 41.4 2.7 20 26-45 31-50 (243)
447 2f6r_A COA synthase, bifunctio 61.6 3.9 0.00013 42.3 2.8 21 26-46 77-97 (281)
448 1uj2_A Uridine-cytidine kinase 61.5 3.8 0.00013 41.3 2.6 25 26-50 24-49 (252)
449 2qen_A Walker-type ATPase; unk 61.3 4.7 0.00016 41.7 3.4 22 25-46 32-53 (350)
450 1ltq_A Polynucleotide kinase; 61.3 3.8 0.00013 42.2 2.7 21 26-46 4-24 (301)
451 4ag6_A VIRB4 ATPase, type IV s 61.2 3.2 0.00011 44.8 2.2 28 23-50 34-61 (392)
452 1ak2_A Adenylate kinase isoenz 61.1 4.4 0.00015 40.3 3.0 21 25-45 17-37 (233)
453 1l8q_A Chromosomal replication 61.1 5.9 0.0002 41.3 4.1 40 7-48 22-61 (324)
454 3n70_A Transport activator; si 60.7 8.9 0.00031 35.1 4.9 22 27-48 27-48 (145)
455 3g5u_A MCG1178, multidrug resi 60.6 3.8 0.00013 51.7 2.9 26 26-51 1061-1086(1284)
456 2ocp_A DGK, deoxyguanosine kin 60.5 4.2 0.00015 40.5 2.8 21 26-46 4-24 (241)
457 2iw3_A Elongation factor 3A; a 60.5 3.2 0.00011 50.7 2.2 23 26-48 463-485 (986)
458 1p5z_B DCK, deoxycytidine kina 60.4 3.2 0.00011 42.1 1.9 22 25-46 25-46 (263)
459 2iut_A DNA translocase FTSK; n 60.1 3.9 0.00013 47.1 2.6 23 24-46 214-236 (574)
460 3ux8_A Excinuclease ABC, A sub 59.6 3.1 0.00011 48.6 1.8 19 27-45 351-369 (670)
461 2dhr_A FTSH; AAA+ protein, hex 59.0 5.1 0.00018 45.3 3.4 26 22-47 61-87 (499)
462 3ux8_A Excinuclease ABC, A sub 58.8 5.5 0.00019 46.4 3.7 47 163-210 212-262 (670)
463 2v1u_A Cell division control p 58.7 8.2 0.00028 40.5 4.8 25 23-47 43-67 (387)
464 2r62_A Cell division protease 58.3 4.3 0.00015 40.9 2.4 20 27-46 47-66 (268)
465 1sxj_D Activator 1 41 kDa subu 58.1 5.5 0.00019 41.5 3.3 26 23-48 57-82 (353)
466 3co5_A Putative two-component 57.3 11 0.00036 34.5 4.7 22 26-47 29-50 (143)
467 2qz4_A Paraplegin; AAA+, SPG7, 56.8 12 0.00042 37.1 5.5 22 25-46 40-61 (262)
468 1a7j_A Phosphoribulokinase; tr 55.7 4 0.00014 42.6 1.7 22 25-46 6-27 (290)
469 2qby_B CDC6 homolog 3, cell di 54.6 12 0.00041 39.4 5.2 24 24-47 45-68 (384)
470 3uk6_A RUVB-like 2; hexameric 54.5 13 0.00046 39.0 5.6 24 24-47 70-93 (368)
471 3zvl_A Bifunctional polynucleo 54.1 5.6 0.00019 43.6 2.6 21 26-46 260-280 (416)
472 1sxj_B Activator 1 37 kDa subu 53.7 9.8 0.00034 38.9 4.3 25 23-47 41-65 (323)
473 1c9k_A COBU, adenosylcobinamid 53.4 6.8 0.00023 38.3 2.8 21 27-47 2-22 (180)
474 1d2n_A N-ethylmaleimide-sensit 52.8 11 0.00036 38.2 4.3 25 23-47 63-87 (272)
475 4edh_A DTMP kinase, thymidylat 52.8 6.6 0.00023 39.1 2.6 21 26-46 8-28 (213)
476 2qgz_A Helicase loader, putati 52.6 15 0.00051 38.4 5.5 41 7-48 136-176 (308)
477 3syl_A Protein CBBX; photosynt 52.5 11 0.00038 38.6 4.4 25 23-47 66-90 (309)
478 3nmd_A CGMP dependent protein 52.3 8.6 0.00029 32.0 2.8 46 695-740 24-69 (72)
479 3d3q_A TRNA delta(2)-isopenten 52.3 6.5 0.00022 42.3 2.6 22 25-46 8-29 (340)
480 1iqp_A RFCS; clamp loader, ext 52.2 9.7 0.00033 39.0 3.9 37 7-47 33-69 (327)
481 3exa_A TRNA delta(2)-isopenten 52.1 6.6 0.00022 41.9 2.6 22 25-46 4-25 (322)
482 1tue_A Replication protein E1; 52.0 13 0.00045 37.3 4.7 36 5-46 42-80 (212)
483 1bif_A 6-phosphofructo-2-kinas 51.9 6.4 0.00022 43.7 2.7 22 26-47 41-62 (469)
484 2dr3_A UPF0273 protein PH0284; 51.6 7.4 0.00025 38.2 2.8 26 21-46 19-45 (247)
485 2z4s_A Chromosomal replication 51.4 9.6 0.00033 42.1 4.0 39 7-48 116-154 (440)
486 2h92_A Cytidylate kinase; ross 51.4 7.2 0.00025 37.9 2.7 21 26-46 5-25 (219)
487 3tmk_A Thymidylate kinase; pho 50.9 7.7 0.00026 38.8 2.8 21 26-46 7-27 (216)
488 1ewq_A DNA mismatch repair pro 50.8 5.7 0.0002 47.3 2.1 25 26-50 578-602 (765)
489 3pfi_A Holliday junction ATP-d 50.8 13 0.00046 38.6 4.8 24 23-46 54-77 (338)
490 3lv8_A DTMP kinase, thymidylat 50.8 7.6 0.00026 39.4 2.8 21 26-46 29-49 (236)
491 4tmk_A Protein (thymidylate ki 50.8 7.8 0.00027 38.6 2.8 21 26-46 5-25 (213)
492 2qmh_A HPR kinase/phosphorylas 50.6 7.4 0.00025 38.9 2.6 22 26-47 36-57 (205)
493 1wb9_A DNA mismatch repair pro 50.5 5.9 0.0002 47.4 2.2 25 26-50 609-633 (800)
494 4fcw_A Chaperone protein CLPB; 50.0 10 0.00034 38.9 3.6 24 26-49 49-72 (311)
495 3t15_A Ribulose bisphosphate c 50.0 8.9 0.0003 39.7 3.2 26 21-46 32-58 (293)
496 3v9p_A DTMP kinase, thymidylat 50.0 6.5 0.00022 39.7 2.1 21 26-46 27-47 (227)
497 3ld9_A DTMP kinase, thymidylat 49.8 7.8 0.00027 39.0 2.6 21 26-46 23-43 (223)
498 3b9p_A CG5977-PA, isoform A; A 49.4 6.7 0.00023 40.1 2.1 24 24-47 54-77 (297)
499 2chq_A Replication factor C sm 49.3 12 0.00041 38.1 4.1 25 23-47 37-61 (319)
500 3eph_A TRNA isopentenyltransfe 49.0 8.7 0.0003 42.3 3.0 21 25-45 3-23 (409)
No 1
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=100.00 E-value=2e-46 Score=442.20 Aligned_cols=469 Identities=20% Similarity=0.245 Sum_probs=356.1
Q ss_pred CccHHHHHHHHHHhhhhcC--CCCCCCEEEEEeccCCchHHHHHHHhCCccceecCccccccceEEEEeeCCCCCCCceE
Q 004351 1 MHSLYEAYNELHGLAQELE--TPFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCH 78 (759)
Q Consensus 1 m~~L~~~~n~L~~l~~~~~--~~i~lPqIVVVG~QSsGKSSLLEAL~G~~fp~~g~g~cTR~P~~l~l~~~~~~~~~~~~ 78 (759)
|++|++.||+|++..+.++ ..+++|+|||||+||+|||||||+|+|.+|.|+|.|+|||||+++++.+++. .|.+.
T Consensus 26 ~~~li~~inkl~d~l~~lg~~~~i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~--~~~~~ 103 (772)
T 3zvr_A 26 MEDLIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTT--EYAEF 103 (772)
T ss_dssp GGGHHHHHHHHHHHHHTTTCCGGGCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSS--CEEEC
T ss_pred HHHHHHHHHHHHHHHHhcCccccCCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCc--chhhe
Confidence 7899999999999776665 4699999999999999999999999999997799999999999999999875 23332
Q ss_pred EecCCCCCCcccccChHHHHHHHHHHHhhhhhccCCCccccceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHH
Q 004351 79 LASSDVDPTLAQEKSLQEIQSFIEAENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQA 158 (759)
Q Consensus 79 i~~~d~~~~~~~~~~~~~l~~~Ie~~~~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~~~q~~~~e~~~ 158 (759)
+.. .+....+++++.+.|+.++..+.+.+ .+|+.++|.++|.+|++++|+||||||++..+.++++.++ .
T Consensus 104 l~~-----~~~~~~~~~~v~~~I~~~~~~~~g~~--~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di---~ 173 (772)
T 3zvr_A 104 LHC-----KGKKFTDFEEVRLEIEAETDRVTGTN--KGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDI---E 173 (772)
T ss_dssp STT-----TTCCBCCHHHHHHHHHHHHHHHHCST--TCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHH---H
T ss_pred ecc-----CCcccCCHHHHHHHHHHHHhhhcCCC--CcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHH---H
Confidence 211 23566789999999999988887754 6899999999999999999999999999998877777543 4
Q ss_pred HHHHHHHHHHhcCccceeEeeccc-CCcCcHHHHHHHHHhCcCCCeEEEEecCCCcccccccChhhHHHhhCCCCCCCCc
Q 004351 159 RAVESLVRAKMQHREFIILCLEDC-SDWSNATTRRVVMQIDPELKRTIIVSTKLDTKIPQFARASDVEVFLSPPACTLDG 237 (759)
Q Consensus 159 ~~v~~lv~~Yi~~~~~IIL~V~~~-~D~~~~~~l~lar~~Dp~g~RTIgVlTK~D~~~~~~~~~~~~~~~L~~~~~~l~~ 237 (759)
..+.+++..|+..+..+||+|+++ .++..++.+.+++.+++.|.++|+|+||+|++.++ .....++.+.. .+
T Consensus 174 ~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~g~pvIlVlNKiDlv~~~----~~~~~il~~~~---~~ 246 (772)
T 3zvr_A 174 FQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEG----TDARDVLENKL---LP 246 (772)
T ss_dssp HHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCTTCSSEEEEEECTTSSCTT----CCSHHHHTTCS---SC
T ss_pred HHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHhcCCCEEEEEeCcccCCcc----hhhHHHHHHHh---hh
Confidence 577899999999988999999877 57888888899999999999999999999997543 22344554322 12
Q ss_pred ccccCCCeeeecCCC-CccCCCCCCCCCHHHHHHhhhhHHHhHHHHHH-HHh-cCCccccccCCcchHHHHHHHHHHHHH
Q 004351 238 FILGGSPFFTSVPSG-RVGTGHDSVYSSNEEFKQAIFIREMEDITSLE-EKL-GRSLSKQERSRIGVSKLRSFLEELLQK 314 (759)
Q Consensus 238 ~~LG~~~ffvs~P~~-rvg~~~d~v~rs~~~~~~~~~~~e~~d~~~lE-~~f-~~~w~~~~~~r~Gi~~Lr~~Ls~lL~~ 314 (759)
..+ +|+..+|.. ..|.+ -+++.+.+ ..| ..| .+||+....++.|+..|.+.|.+.|..
T Consensus 247 l~l---g~~~VV~iSA~~G~G-------vdeL~eaI---------~~e~~ffpe~P~yd~ltDr~g~~~LaEiLrEkL~~ 307 (772)
T 3zvr_A 247 LRR---GYIGVVNRSQKDIDG-------KKDITAAL---------AAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTN 307 (772)
T ss_dssp CSS---CEEECCCCCCEESSS-------SEEHHHHH---------HHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHH
T ss_pred hhc---cCCceEEeccccccc-------chhHHHHH---------HHHHHhccCCcchhhhhhcccHHHHHHHHHHHHHH
Confidence 223 355444321 11211 12333322 112 234 566667788999999999999999999
Q ss_pred HHHhhhhhhHHHHHHHhhhHHHHHHHHHHHHhhcCccchhh-h-----hHHHHHHHHHHHHHhhcccccCCCcccchhhh
Q 004351 315 RYMDSVPMIIPLLEKEYCSTTRKLNEINKELSTLDEVKLKE-K-----GRVFHDLFLTKLSLLLKGTVVAPPDKFGETLQ 388 (759)
Q Consensus 315 ~i~~~LP~i~~~L~~e~~~i~~~L~~~~~eL~~Lg~~~~~~-~-----~~~~~~~F~~~is~~l~G~~~a~~~~~g~tl~ 388 (759)
||+++||.|...|+ .+|..+..+|+++++.+... . ...++..|++.+.++++|.+..
T Consensus 308 hi~~ELP~l~~~I~-------~~l~s~~vele~~~~~~~~~~~~~~~~ll~~~~~f~~~~~~~i~G~~~~---------- 370 (772)
T 3zvr_A 308 HIRDTLPGLRNKLQ-------SQLLSIEKEVDEYKNFRPDDPARKTKALLQMVQQFAVDFEKRIEGSGDQ---------- 370 (772)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHCCCSSSCSHHHHHHHHHHHHHHHHHHHTC--------------
T ss_pred HHHhhCccHHHHHH-------HHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCCCCC----------
Confidence 99999999998875 58889999999987665422 1 1235789999999999997520
Q ss_pred hhhhcCCcccCCCCCCCCcccCCCCcceeechhHHHHHHHH-hhhhcCcccCCC-CCHHHHHHHhCccccCCCCcc--hh
Q 004351 389 NERINGGAFVGTDGLQFPHKLIPNAGMRLYGGAQYHRAMAE-FRFMVGGIKCPP-ITREEIVNACGVEDIHDGTNY--SR 464 (759)
Q Consensus 389 de~~~~g~~~~~~G~~~~~~~~p~~~~rL~gGaq~~R~l~E-f~~~~~~~~~p~-~s~eeia~a~g~~~~~~~~~~--~~ 464 (759)
-.+..|.|||.++|+++| |......+...+ +++++|..|+-...+.....| +.
T Consensus 371 -----------------------~~~~el~ggari~~if~~~f~~~~~~~~~~~~~~~~~I~~~i~n~~G~~~~lf~p~~ 427 (772)
T 3zvr_A 371 -----------------------IDTYELSGGARINRIFHERFPFELVKMEFDEKELRREISYAIKNIHDIRTGLFTPDL 427 (772)
T ss_dssp ----------------------------CCHHHHHHHHHHTHHHHHHHTTSCCHHHHHHHHHHHHHHCC------CHHHH
T ss_pred -----------------------cCcccCCCCeeeehhHHHHhHHHHhcCCCchhhhHHHHHHHHHhCCCCCCCCCChHH
Confidence 013479999999999999 555555544333 578899988855443333334 77
Q ss_pred hHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHhh
Q 004351 465 TACVIAVAKARDTFEPFLHQLGCRLLHILKRLLPISIYLLQKEGEYLSGHEVFLRRVASAFNNFAESTERACREKCMEDL 544 (759)
Q Consensus 465 aa~~ia~~~~~~~~~Pl~~~l~~r~~~il~rl~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~fv~~~~~~c~~~~~~~l 544 (759)
++..|++.++++|-+|.+.|+-. |...|..++..+. ..+.+||.+..++.++...++++.+..|++.+..=.
T Consensus 428 ~fe~LVk~QI~rl~ePsl~CVdl----V~~eL~~iv~~~~----~~l~RfP~Lr~ei~~iv~~~Lre~~~~t~~~V~~LI 499 (772)
T 3zvr_A 428 AFEATVKKQVQKLKEPSIKCVDM----VVSELTSTIRKCS----EKLQQYPRLREEMERIVTTHIREREGRTKEQVMLLI 499 (772)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHH----HHHHHHHHHHHHG----GGGTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH----HHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78889999999999998876542 3555555555543 468999999999999999999999999999999877
Q ss_pred hhhhhhhhhcc
Q 004351 545 VSTTRYVTWSL 555 (759)
Q Consensus 545 ~s~t~~v~w~l 555 (759)
+.-..||+-+-
T Consensus 500 d~E~ayintnH 510 (772)
T 3zvr_A 500 DIELAYMNTNH 510 (772)
T ss_dssp HHHHTCCCTTC
T ss_pred HHhcCCCCCCC
Confidence 77788888776
No 2
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=100.00 E-value=4.1e-45 Score=426.04 Aligned_cols=562 Identities=17% Similarity=0.190 Sum_probs=382.1
Q ss_pred cHHHHHHHHHHhhhhcCCCCCCCEEEEEeccCCchHHHHHHHhCCccceecCccccccceEEEEeeCCCCCCCceEEecC
Q 004351 3 SLYEAYNELHGLAQELETPFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCHLASS 82 (759)
Q Consensus 3 ~L~~~~n~L~~l~~~~~~~i~lPqIVVVG~QSsGKSSLLEAL~G~~fp~~g~g~cTR~P~~l~l~~~~~~~~~~~~i~~~ 82 (759)
.+++.+|.|+++| ++..+++|+|+|||++||||||||++|+|..+| +++|.||++|+.+.+.+.+....++..+..-
T Consensus 26 ~ll~~id~l~~~g--v~~~l~lp~iaIvG~nGsGKSTLL~~I~Gl~~P-~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v 102 (608)
T 3szr_A 26 PCIDLIDSLRALG--VEQDLALPAIAVIGDQSSGKSSVLEALSGVALP-RGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQ 102 (608)
T ss_dssp HHHHHHHHHHHHS--CCSSCCCCCEECCCCTTSCHHHHHHHHHSCC--------CCCSCEEEEEEECSSSSCCEEEESCC
T ss_pred HHHHHHHHHHhCC--CCCcccCCeEEEECCCCChHHHHHHHHhCCCCC-CCCCeEEEcCEEEEEecCCccccceeEEeee
Confidence 4789999999999 788999999999999999999999999999666 6789999999999988876544555554321
Q ss_pred CCCCCcccccChHHHHHHHHHHHhhhhhccCCCccccceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHH
Q 004351 83 DVDPTLAQEKSLQEIQSFIEAENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVE 162 (759)
Q Consensus 83 d~~~~~~~~~~~~~l~~~Ie~~~~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~ 162 (759)
. ......+...+.+.|..+...+.+.+ .+++.+++.+.+.+|+.|+|+|+|+||++..+.+.++.. ....+.
T Consensus 103 ~---Q~~~l~~~~tv~e~i~~~~~~~~~~~--~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~---~~~~i~ 174 (608)
T 3szr_A 103 D---YEIEISDASEVEKEINKAQNAIAGEG--MGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPAD---IGYKIK 174 (608)
T ss_dssp ------CCCCCHHHHHTTHHHHHHHHHCSS--SCCCSCCEEEEEEESSSCCEEEEECCC------CCSSCS---HHHHHH
T ss_pred c---ccccCCCHHHHHHHHHHHHHHhcCCc--cccchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHH---HHHHHH
Confidence 1 11233455677777777666655543 679999999999999999999999999999877666543 356788
Q ss_pred HHHHHHhcCccceeEeeccc-CCcCcHHHHHHHHHhCcCCCeEEEEecCCCcccccccChhhHHHhhCCCCCCCCccccc
Q 004351 163 SLVRAKMQHREFIILCLEDC-SDWSNATTRRVVMQIDPELKRTIIVSTKLDTKIPQFARASDVEVFLSPPACTLDGFILG 241 (759)
Q Consensus 163 ~lv~~Yi~~~~~IIL~V~~~-~D~~~~~~l~lar~~Dp~g~RTIgVlTK~D~~~~~~~~~~~~~~~L~~~~~~l~~~~LG 241 (759)
+|+.+|++++++|||+|+++ .|.+++.++++++++||.|.|||||+||+|++.++ ....+.+++.|.. .+..+
T Consensus 175 ~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dlv~~g--~~~~~~~~l~~~~---~~l~~- 248 (608)
T 3szr_A 175 TLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVDKG--TEDKVVDVVRNLV---FHLKK- 248 (608)
T ss_dssp HHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGGSSSS--STTCCCCCC--CC---SCCSS-
T ss_pred HHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhhcCcc--cHHHHHHHHhCcc---cccCc-
Confidence 99999999999999998765 69999999999999999999999999999998654 2334556777754 33344
Q ss_pred CCCeeeecCCCCccCCCCCCCCCHHHHHHhhhhHHHhHHHHHHHHh--cCCcccc--ccCCcchHHHHHHHHHHHHHHHH
Q 004351 242 GSPFFTSVPSGRVGTGHDSVYSSNEEFKQAIFIREMEDITSLEEKL--GRSLSKQ--ERSRIGVSKLRSFLEELLQKRYM 317 (759)
Q Consensus 242 ~~~ffvs~P~~rvg~~~d~v~rs~~~~~~~~~~~e~~d~~~lE~~f--~~~w~~~--~~~r~Gi~~Lr~~Ls~lL~~~i~ 317 (759)
+||+.. |++++++..+.+..++ ...|..| .++|++. +.+++|+.+|+++|+++|.+||+
T Consensus 249 --g~~~v~------------nr~~~~~~~~~~~~~~---~~~E~~fF~~~~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~ 311 (608)
T 3szr_A 249 --GYMIVK------------CRGQQEIQDQLSLSEA---LQREKIFFENHPYFRDLLEEGKATVPCLAEKLTSELITHIC 311 (608)
T ss_dssp --CEECCC------------CSCTTCTTTCCCHHHH---TTTHHHHTTTCTTTSGGGGTCC---CCHHHHHHHHHHHHHH
T ss_pred --eEEEEe------------cCchhhcccCCCHHHH---HHHHHHHHccCccccccCccccccHHHHHHHHHHHHHHHHH
Confidence 477642 2333333333333332 2345544 6677653 34699999999999999999999
Q ss_pred hhhhhhHHHHHHHhhhHHHHHHHHHHHHhhcCccch-hhhhH-H----HHHHHHHHHHHhhcccccCCCcccchhhhhhh
Q 004351 318 DSVPMIIPLLEKEYCSTTRKLNEINKELSTLDEVKL-KEKGR-V----FHDLFLTKLSLLLKGTVVAPPDKFGETLQNER 391 (759)
Q Consensus 318 ~~LP~i~~~L~~e~~~i~~~L~~~~~eL~~Lg~~~~-~~~~~-~----~~~~F~~~is~~l~G~~~a~~~~~g~tl~de~ 391 (759)
++||.|...|+ .+|.+++++|++||+++. ++..+ . .+..|.+.+..+++|....
T Consensus 312 ~~lP~l~~~i~-------~~l~~~~~el~~lg~~~~~~~~~~~~~l~~~~~~f~~~~~~~~~g~~~~------------- 371 (608)
T 3szr_A 312 KSLPLLENQIK-------ETHQRITEELQKYGVDIPEDENEKMFFLIDKVNAFNQDITALMQGEETV------------- 371 (608)
T ss_dssp HHHHHHHHHHH-------HHHHHHHHHHHTSCCCCCCSHHHHHHHHHHHHHHHHHHHHHHHSSCCCC-------------
T ss_pred HhhHHHHHHHH-------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCcC-------------
Confidence 99999998874 689999999999999764 33332 2 3578888888888876310
Q ss_pred hcCCcccCCCCCCCCcccCCCCcceeechhHHHHHHHHhhhhcCc--ccCCCCCHHHHHHHhCccccCCCCcc--hhhHH
Q 004351 392 INGGAFVGTDGLQFPHKLIPNAGMRLYGGAQYHRAMAEFRFMVGG--IKCPPITREEIVNACGVEDIHDGTNY--SRTAC 467 (759)
Q Consensus 392 ~~~g~~~~~~G~~~~~~~~p~~~~rL~gGaq~~R~l~Ef~~~~~~--~~~p~~s~eeia~a~g~~~~~~~~~~--~~aa~ 467 (759)
| ....| .++.+++.+++|...... -++.....+||..++....+-..|+| ..+..
T Consensus 372 ----------~---------~~~~~--~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~f~~~~~fe 430 (608)
T 3szr_A 372 ----------G---------EEDIR--LFTRLRHEFHKWSTIIENNFQEGHKILSRKIQKFENQAAAAELPGFVNYRTFE 430 (608)
T ss_dssp ----------C---------TTCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCSSSCSSCTHHHH
T ss_pred ----------C---------Ccccc--HHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHccCCCCCCCccHHHHH
Confidence 0 01223 556777777776322211 11223457788766533222223333 88999
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhh
Q 004351 468 VIAVAKARDTFEPFLHQLGCRLLHILKRLLPISIYLLQKEGEYLSGHEVFLRRVASAFNNFAESTERACREKCMEDLVST 547 (759)
Q Consensus 468 ~ia~~~~~~~~~Pl~~~l~~r~~~il~rl~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~fv~~~~~~c~~~~~~~l~s~ 547 (759)
.|.+++.+.|-+|.+.++-.-.. ++++.+ ..++. ..+.+||.+..+++++...++++.++.|++.+.+.++.-
T Consensus 431 ~lvk~qi~~l~~Pa~~~v~~V~~-~v~~~~---~~~~~---~~f~rfp~L~~~~~~~i~~~~~~~~~~a~~~i~~li~mE 503 (608)
T 3szr_A 431 TIVKQQIKALEEPAVDMLHTVTD-MVRLAF---TDVSI---KNFEEFFNLHRTAKSKIEDIRAEQEREGEKLIRLHFQME 503 (608)
T ss_dssp HHHHHHHGGGHHHHHHHHHHHHH-HHHHHH---HHHHH---HHHSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHH---HHHHH---HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999877654332 333322 22222 247799999999999999999999999999999999876
Q ss_pred hhhhhhccccccchhhhhhhcccCCccccccccccCCCCcccccccccccCccCCCCCcccccccccccCCCCCCccchh
Q 004351 548 TRYVTWSLHNKNRAGLRQFLDSFGSTEQSAVLSNSLSMPLCQESSFVSVANEKHDTKPRTDVKLSQVASGVDSSSSVQTT 627 (759)
Q Consensus 548 t~~v~w~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (759)
..|++-+- .|. + + +
T Consensus 504 ~~~~~~d~---------~~~-----------------------~-------------------------~-~-------- 517 (608)
T 3szr_A 504 QIVYGAFQ---------SSS-----------------------A-------------------------T-D-------- 517 (608)
T ss_dssp HHCCCC--------------------------------------------------------------------------
T ss_pred hccccCCc---------ccc-----------------------C-------------------------C-C--------
Confidence 54432100 000 0 0 0
Q ss_pred hhHHHHhhhhhhhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhhhhhhHHHHHHHHhhcccchhhhh
Q 004351 628 ETRLADLLDNTLWNRRLAPSSERIVYALVQQIFHGIREYFLASAELKFNCFLLMPVVDKLPALLREDLESAFEGDLDNVF 707 (759)
Q Consensus 628 ~~~~~~~~~~~l~~r~~~~~s~~~V~~l~~~~f~~iR~~~~~~~~~k~n~ffL~P~~~~l~~~l~~~l~~~~~~~~~~~f 707 (759)
.+...+..++.--|.-.+..|+-+|++.-..|.+-=..+.|-..|-..|- .+++++++.
T Consensus 518 -------------------~~~~ei~~~l~sY~~iv~~~~~D~vP~~I~~~lv~~~~~~lq~~l~~~l~--~~~~~~~ll 576 (608)
T 3szr_A 518 -------------------SSMEEIFQHLMAYHQEASKRISSHIPLIIQFFMLQTYGQQLQKAMLQLLQ--DKDTYSWLL 576 (608)
T ss_dssp --------------------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHTTTT--CHHHHHHHT
T ss_pred -------------------ccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh--cchhHHHHh
Confidence 01122566777788888999999999888888766666655555544443 234455554
Q ss_pred chhhHHHHHHhhhhhHHHHHHHHHHHHHH
Q 004351 708 DITNLRHSLSQQKSDTEIEMKRIKKLKEK 736 (759)
Q Consensus 708 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~k 736 (759)
.=. ....++|.+|..+++++++.++.
T Consensus 577 ~E~---~~~~~~R~~l~~~~~~L~~A~~~ 602 (608)
T 3szr_A 577 KER---SDTSDKRKFLKERLARLTQARRR 602 (608)
T ss_dssp CCC---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCC---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 433 34556777777778877776543
No 3
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=100.00 E-value=3.3e-40 Score=360.96 Aligned_cols=315 Identities=23% Similarity=0.331 Sum_probs=242.4
Q ss_pred CccHHHHHHHHHHhhhhcCC----------CCCCCEEEEEeccCCchHHHHHHHhCCccceecCccccccceEEEEeeCC
Q 004351 1 MHSLYEAYNELHGLAQELET----------PFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNP 70 (759)
Q Consensus 1 m~~L~~~~n~L~~l~~~~~~----------~i~lPqIVVVG~QSsGKSSLLEAL~G~~fp~~g~g~cTR~P~~l~l~~~~ 70 (759)
|++|+..+|+||++...++. .+++|+|||||+||+|||||||+|+|.+|+|++.|+|||+|+++++.+.+
T Consensus 1 ~~~l~~~~~~l~~~~~~~~~~~~~~~l~~i~~~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~ 80 (360)
T 3t34_A 1 MENLISLVNKIQRACTALGDHGDSSALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKID 80 (360)
T ss_dssp -CCHHHHHHHTTTTTTSCSSCCSSCCC----CCCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECS
T ss_pred ChhHHHHHHHHHHHHHhhCccccccccccccccCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCC
Confidence 99999999999999877653 26999999999999999999999999999889999999999999999887
Q ss_pred CCCCCceEEecCCCCCCcccccChHHHHHHHHHHHhhhhhccCCCccccceEEEEEEecCCCCcEEEeCCCCcCCCCCCC
Q 004351 71 LCELPLCHLASSDVDPTLAQEKSLQEIQSFIEAENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRK 150 (759)
Q Consensus 71 ~~~~~~~~i~~~d~~~~~~~~~~~~~l~~~Ie~~~~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~~~q 150 (759)
....+...+.. ..+....++++++..|..++..+.+.+ .+|+.+++.++|.+|..++|+||||||+.....+++
T Consensus 81 ~~~~~~~~~~~----~~~~~~~~~~~v~~~i~~~~~~~~g~~--~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q 154 (360)
T 3t34_A 81 DGTREYAEFLH----LPRKKFTDFAAVRKEIQDETDRETGRS--KAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQ 154 (360)
T ss_dssp SCSCCEEEETT----STTCCBSCHHHHHHHHHHHHHHTSCTT--CCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTC
T ss_pred Ccccceeeeec----CCCcccCCHHHHHHHHHHHHHHhcCCC--CCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCC
Confidence 65433333322 134567789999999988888876654 689999999999999999999999999999876666
Q ss_pred chhhHHHHHHHHHHHHHHhcCccceeEeeccc-CCcCcHHHHHHHHHhCcCCCeEEEEecCCCcccccccChhhHHHhhC
Q 004351 151 NRALQDQARAVESLVRAKMQHREFIILCLEDC-SDWSNATTRRVVMQIDPELKRTIIVSTKLDTKIPQFARASDVEVFLS 229 (759)
Q Consensus 151 ~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~-~D~~~~~~l~lar~~Dp~g~RTIgVlTK~D~~~~~~~~~~~~~~~L~ 229 (759)
+..+ ...+..++..|+.+++.|||+|.++ .+..++.++.+++.+++.|.|||+|+||+|++.++ ..+.+++.
T Consensus 155 ~~~~---~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~----~~~~~~~~ 227 (360)
T 3t34_A 155 SDSI---VKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKIDLMDKG----TDAVEILE 227 (360)
T ss_dssp CSSH---HHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGGGCCTT----CCSHHHHT
T ss_pred chhH---HHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCccCCCc----ccHHHHHc
Confidence 5443 4577899999999999999998765 68888899999999999999999999999997543 23455565
Q ss_pred CCCCCCCcccccCCCeeeecCCCCccCCCCCCCCCHHHHHHhhhhHHHhHHHHHHHH-h-cCCccccccCCcchHHHHHH
Q 004351 230 PPACTLDGFILGGSPFFTSVPSGRVGTGHDSVYSSNEEFKQAIFIREMEDITSLEEK-L-GRSLSKQERSRIGVSKLRSF 307 (759)
Q Consensus 230 ~~~~~l~~~~LG~~~ffvs~P~~rvg~~~d~v~rs~~~~~~~~~~~e~~d~~~lE~~-f-~~~w~~~~~~r~Gi~~Lr~~ 307 (759)
+.. ..+| .|||... ++|++++.+..+..++. ..|.. | .++|+.....++|+.+|+.+
T Consensus 228 ~~~-----~~~~-~~~~~v~------------~~s~~~i~~~~~~~~~~---~~e~~ff~~~~~~~~~~~~~g~~~L~~~ 286 (360)
T 3t34_A 228 GRS-----FKLK-YPWVGVV------------NRSQADINKNVDMIAAR---KREREYFSNTTEYRHLANKMGSEHLAKM 286 (360)
T ss_dssp TSS-----SCCS-SCCEEEC------------CCCHHHHHTTCCHHHHH---HHHHHHHTTCTTTGGGGGGCSHHHHHHH
T ss_pred Ccc-----cccc-CCeEEEE------------ECChHHhccCCCHHHHH---HHHHHHhcCCCccccchhhcCHHHHHHH
Confidence 532 1234 3566532 34666666555443332 33444 4 66777777889999999999
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHhhhHHHHHHHHHHHHhhcCccchhhh
Q 004351 308 LEELLQKRYMDSVPMIIPLLEKEYCSTTRKLNEINKELSTLDEVKLKEK 356 (759)
Q Consensus 308 Ls~lL~~~i~~~LP~i~~~L~~e~~~i~~~L~~~~~eL~~Lg~~~~~~~ 356 (759)
|+++|.+||+++||.|..+|+ .+|.+++++|++||+++.+..
T Consensus 287 l~~~l~~~i~~~lp~l~~~i~-------~~l~~~~~~l~~lg~~~~~~~ 328 (360)
T 3t34_A 287 LSKHLERVIKSRIPGIQSLIN-------KTVLELETELSRLGKPIAHGT 328 (360)
T ss_dssp HHHHHHHHHHTTCTTHHHHHH-------HHHTTTTCC------------
T ss_pred HHHHHHHHHHHHhHHHHHHHH-------HHHHHHHHHHHHcCCCCCCCH
Confidence 999999999999999998874 689999999999999887543
No 4
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=100.00 E-value=7.3e-35 Score=318.12 Aligned_cols=327 Identities=24% Similarity=0.295 Sum_probs=245.2
Q ss_pred CccHHHHHHHHHHhhhhcC--CCCCCCEEEEEeccCCchHHHHHHHhCCccceecCccccccceEEEEeeCCCCCCCceE
Q 004351 1 MHSLYEAYNELHGLAQELE--TPFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCH 78 (759)
Q Consensus 1 m~~L~~~~n~L~~l~~~~~--~~i~lPqIVVVG~QSsGKSSLLEAL~G~~fp~~g~g~cTR~P~~l~l~~~~~~~~~~~~ 78 (759)
|++|++.+|+|++....++ ..+++|+|+|||++|+|||||||+|+|.+|.|++.++|||+|+++++.+.+. .|.+.
T Consensus 6 ~~~l~~~~~~l~d~l~~~g~~~~~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~--~~~~~ 83 (353)
T 2x2e_A 6 MEDLIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATT--EYAEF 83 (353)
T ss_dssp CCSCHHHHHHHHHHHHTTTCGGGCCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSS--CEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCc--cceee
Confidence 8999999999999765554 4789999999999999999999999999997789999999999999998764 35554
Q ss_pred EecCCCCCCcccccChHHHHHHHHHHHhhhhhccCCCccccceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHH
Q 004351 79 LASSDVDPTLAQEKSLQEIQSFIEAENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQA 158 (759)
Q Consensus 79 i~~~d~~~~~~~~~~~~~l~~~Ie~~~~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~~~q~~~~e~~~ 158 (759)
+.. .+....+++++...|+.++.++.|.+ .+++.+++.+++.+|+.++|+||||||+...+.++++.++ .
T Consensus 84 ~~~-----~~~~~tt~~~v~~~i~~~~~~i~g~~--~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~---~ 153 (353)
T 2x2e_A 84 LHC-----KGKKFTDFEEVRLEIEAETDRVTGTN--KGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDI---E 153 (353)
T ss_dssp TTS-----TTCCBCCHHHHHHHHHHHHHHHHTTT--TCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTH---H
T ss_pred eec-----CCcccCCHHHHHHHHHHHHHHhcccC--CCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhH---H
Confidence 432 23456788999999998888886654 6799999999999999999999999999998877776543 4
Q ss_pred HHHHHHHHHHhcCccceeEeeccc-CCcCcHHHHHHHHHhCcCCCeEEEEecCCCcccccccChhhHHHhhCCCCCCCCc
Q 004351 159 RAVESLVRAKMQHREFIILCLEDC-SDWSNATTRRVVMQIDPELKRTIIVSTKLDTKIPQFARASDVEVFLSPPACTLDG 237 (759)
Q Consensus 159 ~~v~~lv~~Yi~~~~~IIL~V~~~-~D~~~~~~l~lar~~Dp~g~RTIgVlTK~D~~~~~~~~~~~~~~~L~~~~~~l~~ 237 (759)
+.+++|+..|+.+++++||+|.++ .++.++.++.+++.++|.|.|+|+|+||+|+..++ .++..++.+.. ..
T Consensus 154 ~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~~~~~~i~V~NK~Dl~~~~----~~~~~~~~~~~---~~ 226 (353)
T 2x2e_A 154 FQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVDPQGQRTIGVITKLDLMDEG----TDARDVLENKL---LP 226 (353)
T ss_dssp HHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHCTTCTTEEEEEECGGGSCTT----CCCHHHHTTCS---SC
T ss_pred HHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhCcCCCceEEEeccccccCcc----hhHHHHHhCCc---cc
Confidence 578899999999999999998866 57888888889999999999999999999997432 23445666532 12
Q ss_pred ccccCCCeeeecCCCCccCCCCCCCCCHHHHHHhhhhHHHhHHHHHHHH-h--cCCccccccCCcchHHHHHHHHHHHHH
Q 004351 238 FILGGSPFFTSVPSGRVGTGHDSVYSSNEEFKQAIFIREMEDITSLEEK-L--GRSLSKQERSRIGVSKLRSFLEELLQK 314 (759)
Q Consensus 238 ~~LG~~~ffvs~P~~rvg~~~d~v~rs~~~~~~~~~~~e~~d~~~lE~~-f--~~~w~~~~~~r~Gi~~Lr~~Ls~lL~~ 314 (759)
..+ +|+... +.|..+-. ++. +..+.-..|.. | .+.|.. .+.++|+..|++.|++.|.+
T Consensus 227 l~~---~~~~v~------------~~SA~~~~-~i~--~l~~~l~~e~~~f~~~~~~~~-~~~r~~~~~l~~~l~e~l~~ 287 (353)
T 2x2e_A 227 LRR---GYIGVV------------NRSQKDID-GKK--DITAALAAERKFFLSHPSYRH-LADRMGTPYLQKVLNQQLTN 287 (353)
T ss_dssp CTT---CEEECC------------CCCHHHHH-TTC--CHHHHHHHHHHHHHHCTTTGG-GGGGCSHHHHHHHHHHHHHH
T ss_pred ccC---CceEEE------------eCCccccc-ccc--cHHHHHHHHHHHhccCCcccc-cHHhhCHHHHHHHHHHHHHH
Confidence 223 354322 22333221 111 11111111222 3 344555 45799999999999999999
Q ss_pred HHHhhhhhhHHHHHHHhhhHHHHHHHHHHHHhhcCccchhh---hh-HHHHHHHHHHHHHhh
Q 004351 315 RYMDSVPMIIPLLEKEYCSTTRKLNEINKELSTLDEVKLKE---KG-RVFHDLFLTKLSLLL 372 (759)
Q Consensus 315 ~i~~~LP~i~~~L~~e~~~i~~~L~~~~~eL~~Lg~~~~~~---~~-~~~~~~F~~~is~~l 372 (759)
|++++||.+...|+ .++..++.+|+++++.+... .. +.++-.+++.|+..+
T Consensus 288 ~i~~~lP~l~~~i~-------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 342 (353)
T 2x2e_A 288 HIRDTLPGLRNKLQ-------SQLLSIEKEVEEYKNFRPDKHGTDSRVDEMLRMYHALKEAL 342 (353)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHCCCSSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHccCCCCCchhhhhHHHHHHHHHHHHHHHH
Confidence 99999999998875 57889999999997765432 12 245555555555444
No 5
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.97 E-value=9.3e-30 Score=271.27 Aligned_cols=307 Identities=27% Similarity=0.362 Sum_probs=199.5
Q ss_pred ccHHHHHHHHHHhhhhcCC-CCCCCEEEEEeccCCchHHHHHHHhCCccceecCccccccceEEEEeeCCCCC-----CC
Q 004351 2 HSLYEAYNELHGLAQELET-PFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCE-----LP 75 (759)
Q Consensus 2 ~~L~~~~n~L~~l~~~~~~-~i~lPqIVVVG~QSsGKSSLLEAL~G~~fp~~g~g~cTR~P~~l~l~~~~~~~-----~~ 75 (759)
++|++.+|+|+++...++. .+++|+|+|||++|+|||||||+|+|.++.|++.+.|||+|+++++.+.+... ..
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~~~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~ 80 (315)
T 1jwy_B 1 DQLIPVINKLQDVFNTLGSDPLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQE 80 (315)
T ss_dssp CCHHHHHHHHHHHTTTSSSCTTCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCC
T ss_pred CchHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhh
Confidence 5799999999999777765 48999999999999999999999999998678999999999999999875421 11
Q ss_pred ceEEecCCCCCCcccccChHHHHHHHHHHHhhhhhccCCCccccceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhH
Q 004351 76 LCHLASSDVDPTLAQEKSLQEIQSFIEAENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQ 155 (759)
Q Consensus 76 ~~~i~~~d~~~~~~~~~~~~~l~~~Ie~~~~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~~~q~~~~e 155 (759)
...+.. .++....+++++.+.|+.++.++.+.+ .+|+.+++.++|.+|+..+++||||||+...+...++..+
T Consensus 81 ~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~g~~--~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~- 153 (315)
T 1jwy_B 81 WGEFLH----KPNDMFYDFSEIREEIIRDTDRMTGKN--KGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDI- 153 (315)
T ss_dssp EEEESS----STTCCBCCTHHHHHHHHHHCC----------CCCCCEEEEEEETTSCSEEEEECCCCC---------CS-
T ss_pred hhhhhc----ccccccCCHHHHHHHHHHHHHHhcCCC--CCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhH-
Confidence 112211 133456789999999998877766543 5799999999999999999999999999875543333222
Q ss_pred HHHHHHHHHHHHHhcCccceeEeeccc-CCcCcHHHHHHHHHhCcCCCeEEEEecCCCcccccccChhhHHHhhCCCCCC
Q 004351 156 DQARAVESLVRAKMQHREFIILCLEDC-SDWSNATTRRVVMQIDPELKRTIIVSTKLDTKIPQFARASDVEVFLSPPACT 234 (759)
Q Consensus 156 ~~~~~v~~lv~~Yi~~~~~IIL~V~~~-~D~~~~~~l~lar~~Dp~g~RTIgVlTK~D~~~~~~~~~~~~~~~L~~~~~~ 234 (759)
...+..++..|++..+.+|++|.++ .++.++....+++.+++.+.++|+|+||+|+..+. ..+..++....
T Consensus 154 --~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~Dl~~~~----~~~~~~~~~~~-- 225 (315)
T 1jwy_B 154 --EQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLDLMDKG----TDAMEVLTGRV-- 225 (315)
T ss_dssp --HHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECTTSSCSS----CCCHHHHTTSS--
T ss_pred --HHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCcccCCcc----hHHHHHHhCCC--
Confidence 2456789999999999999888764 56666667789999999999999999999997433 22344554311
Q ss_pred CCcccccCCCeeeecCCCCccCCCCCCCCCHHHHHHhhhhHHHhHHHHHHHHh-cCCccccccCCcchHHHHHHHHHHHH
Q 004351 235 LDGFILGGSPFFTSVPSGRVGTGHDSVYSSNEEFKQAIFIREMEDITSLEEKL-GRSLSKQERSRIGVSKLRSFLEELLQ 313 (759)
Q Consensus 235 l~~~~LG~~~ffvs~P~~rvg~~~d~v~rs~~~~~~~~~~~e~~d~~~lE~~f-~~~w~~~~~~r~Gi~~Lr~~Ls~lL~ 313 (759)
.. ++ .+|+-..+ .|...........+.. ..+...| .++|+.....++|...|...|.+.+.
T Consensus 226 -~~--~~-~~~~~v~~------------~sa~~~~~~~gv~~l~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~lre~l~ 287 (315)
T 1jwy_B 226 -IP--LT-LGFIGVIN------------RSQEDIIAKKSIRESL--KSEILYFKNHPIYKSIANRSGTAYLSKTLNKLLM 287 (315)
T ss_dssp -SC--CT-TCEEECCC------------CCHHHHSSSCCHHHHH--HHHHHHHHTCTTGGGSGGGCSHHHHHHHHHHHHH
T ss_pred -cc--CC-CCeEEEec------------CChhhhccCCCHHHHH--HHHHHHHhCCCccccchhccCHHHHHHHHHHHHH
Confidence 11 22 23543222 1222211111111111 1222334 44444456779999999999999999
Q ss_pred HHHHhhhhhhHHHHHHHhhhHHHHHHHHHHHHhhc
Q 004351 314 KRYMDSVPMIIPLLEKEYCSTTRKLNEINKELSTL 348 (759)
Q Consensus 314 ~~i~~~LP~i~~~L~~e~~~i~~~L~~~~~eL~~L 348 (759)
++++++||.+...++ .+|.+++++|++|
T Consensus 288 ~~~~~elP~~~~~i~-------~~l~~~~~~l~~~ 315 (315)
T 1jwy_B 288 FHIRDTLPDLKVKVS-------KMLSDVQGELSTY 315 (315)
T ss_dssp HHHHHHHHHHHHHHH-------HHTC---------
T ss_pred HHHHHHhHHHHHHHH-------HHHHHHHHHHHhC
Confidence 999999999998875 5777888887764
No 6
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.97 E-value=2.4e-28 Score=257.83 Aligned_cols=292 Identities=25% Similarity=0.321 Sum_probs=212.8
Q ss_pred CccHHHHHHHHHHhhhhcC--CCCCCCEEEEEeccCCchHHHHHHHhCCccceecCccccccceEEEEeeCCCCCCCceE
Q 004351 1 MHSLYEAYNELHGLAQELE--TPFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCH 78 (759)
Q Consensus 1 m~~L~~~~n~L~~l~~~~~--~~i~lPqIVVVG~QSsGKSSLLEAL~G~~fp~~g~g~cTR~P~~l~l~~~~~~~~~~~~ 78 (759)
|++|++.+|+|++....++ ...++|+|+|||++|+|||||||+|+|.+|.|++.+.||++|+++++.+.+. .+.+.
T Consensus 1 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~--~~~~~ 78 (299)
T 2aka_B 1 MEDLIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTT--EYAEF 78 (299)
T ss_dssp CTTHHHHHHHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSS--CEEEE
T ss_pred CHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCc--ccchh
Confidence 9999999999998766554 4689999999999999999999999999997788899999999999998764 23333
Q ss_pred EecCCCCCCcccccChHHHHHHHHHHHhhhhhccCCCccccceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHH
Q 004351 79 LASSDVDPTLAQEKSLQEIQSFIEAENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQA 158 (759)
Q Consensus 79 i~~~d~~~~~~~~~~~~~l~~~Ie~~~~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~~~q~~~~e~~~ 158 (759)
+.. .+....+.+.+...++..+.++.|.+ .+++.+++.+++.+|+..+++||||||+.....+++++++ .
T Consensus 79 ~~~-----~g~~~tt~~~~~~~~~~~~~~i~g~~--~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~---~ 148 (299)
T 2aka_B 79 LHC-----KGKKFTDFEEVRLEIEAETDRVTGTN--KGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDI---E 148 (299)
T ss_dssp TTS-----TTCCBCCHHHHHHHHHHHHHHHCSST--TCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTH---H
T ss_pred hhc-----CCcccCCHHHHHHHHHHHHHHhcccC--CCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchH---H
Confidence 322 23345677888888877766665543 5799999999999999999999999999986654444322 3
Q ss_pred HHHHHHHHHHhcCccceeEeeccc-CCcCcHHHHHHHHHhCcCCCeEEEEecCCCcccccccChhhHHHhhCCCCCCCCc
Q 004351 159 RAVESLVRAKMQHREFIILCLEDC-SDWSNATTRRVVMQIDPELKRTIIVSTKLDTKIPQFARASDVEVFLSPPACTLDG 237 (759)
Q Consensus 159 ~~v~~lv~~Yi~~~~~IIL~V~~~-~D~~~~~~l~lar~~Dp~g~RTIgVlTK~D~~~~~~~~~~~~~~~L~~~~~~l~~ 237 (759)
..+..++..|+++.+.+||+|.++ .++..++...+++.+++.+.++|+|+||+|+..+. ..+..++.+.. ..
T Consensus 149 ~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~~i~V~NK~Dl~~~~----~~~~~~~~~~~---~~ 221 (299)
T 2aka_B 149 FQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEG----TDARDVLENKL---LP 221 (299)
T ss_dssp HHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECGGGSCTT----CCCHHHHTTCS---SC
T ss_pred HHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCCCCCeEEEEEEccccCCCC----chHHHHHhCCc---Cc
Confidence 467799999999999999888766 56777777789999999999999999999997432 22344555421 11
Q ss_pred ccccCCCeeeecC-CCCccCCCCCCCCCHHHHHHhhhhHHHhHHHHHHHHh-cCCccccccCCcchHHHHHHHHHHHHHH
Q 004351 238 FILGGSPFFTSVP-SGRVGTGHDSVYSSNEEFKQAIFIREMEDITSLEEKL-GRSLSKQERSRIGVSKLRSFLEELLQKR 315 (759)
Q Consensus 238 ~~LG~~~ffvs~P-~~rvg~~~d~v~rs~~~~~~~~~~~e~~d~~~lE~~f-~~~w~~~~~~r~Gi~~Lr~~Ls~lL~~~ 315 (759)
...| |+...+ |-..|.+ -+++.+.+.. +.+..+ ...|.. .+.++|+..|.+.|.+.|..+
T Consensus 222 ~~~~---~~~v~~~SA~~~~g-------i~~l~~~l~~-------~~~~~~~~~~~~~-~~~r~~~~~l~~~l~~~l~~~ 283 (299)
T 2aka_B 222 LRRG---YIGVVNRSQKDIDG-------KKDITAALAA-------ERKFFLSHPSYRH-LADRMGTPYLQKVLNQQLTNH 283 (299)
T ss_dssp CTTC---EEECCCCCCBCTTS-------CBCHHHHHHH-------HHHHHHHCTTTGG-GGGGCSHHHHHHHHHHHHHHH
T ss_pred CCCC---cEEEECCChhhccc-------cccHHHHHHH-------HHHHHhcCCcccc-chhhhCHHHHHHHHHHHHHHH
Confidence 1122 332111 1111211 1223322211 112222 344554 457999999999999999999
Q ss_pred HHhhhhhhHHHHHH
Q 004351 316 YMDSVPMIIPLLEK 329 (759)
Q Consensus 316 i~~~LP~i~~~L~~ 329 (759)
++++||.++..+++
T Consensus 284 ~~~~lP~~~~~i~~ 297 (299)
T 2aka_B 284 IRDTLPGLRNKLQS 297 (299)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHh
Confidence 99999999888754
No 7
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.56 E-value=1.3e-13 Score=162.99 Aligned_cols=172 Identities=19% Similarity=0.187 Sum_probs=111.3
Q ss_pred CCCEEEEEeccCCchHHHHHHHhCCccceecCccccccceEEEEeeCCCCCCCceEEecCCCCCCcccccChHHHHHHHH
Q 004351 23 DAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEIQSFIE 102 (759)
Q Consensus 23 ~lPqIVVVG~QSsGKSSLLEAL~G~~fp~~g~g~cTR~P~~l~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~l~~~Ie 102 (759)
+-+.|+|+|++|+|||||||+|+|.++.|++.+.||++|+++..... +.+++...+... ....+++.+...+.
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~-----~~~t~~~~~g~~--~~~~~~~~i~~~~~ 140 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPE-----KKVTIHFNDGKS--PQQLDFQNFKYKYT 140 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSS-----CEEEEEESSSCC--CCEEEHHHHHHHSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCC-----CeEEEEEcCCCc--ccccChhhhhhhhc
Confidence 35689999999999999999999999888999999999999976432 233433322111 12223333322110
Q ss_pred ---HHHhhhhhccCCCccccceEEEEEEecCC---CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCcccee
Q 004351 103 ---AENMRLERESNSNQFSAKEIIIKVEFKYC---PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFII 176 (759)
Q Consensus 103 ---~~~~~l~~~~~~~~fS~d~I~leI~~p~~---p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~II 176 (759)
.....+.... ....+++..++|..|.. .+++||||||+.... ....++..|+++.+.+|
T Consensus 141 i~~~~~~~l~~~~--~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~-------------~~~~~~~~~i~~aD~vL 205 (695)
T 2j69_A 141 IDPAEAKKLEQEK--KQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTE-------------ARNELSLGYVNNCHAIL 205 (695)
T ss_dssp CCHHHHHHHHTSS--CCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHH-------------TCHHHHTHHHHSSSEEE
T ss_pred CCHHHHHHHhhcc--ccccccceEEEEEccchhccCCeEEEECCCCCchh-------------hHHHHHHHHHHhCCEEE
Confidence 0111121211 23455777888888863 589999999996521 12367888998887666
Q ss_pred EeecccCCcCcHHHHHHHHHhCcCCCeEEEEecCCCcccc
Q 004351 177 LCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKLDTKIP 216 (759)
Q Consensus 177 L~V~~~~D~~~~~~l~lar~~Dp~g~RTIgVlTK~D~~~~ 216 (759)
+++.+.+.+...+...+.+.+.+.+.++++|+||+|+..+
T Consensus 206 ~Vvda~~~~s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~~~ 245 (695)
T 2j69_A 206 FVMRASQPCTLGERRYLENYIKGRGLTVFFLVNAWDQVRE 245 (695)
T ss_dssp EEEETTSTTCHHHHHHHHHHTTTSCCCEEEEEECGGGGGG
T ss_pred EEEeCCCccchhHHHHHHHHHHhhCCCEEEEEECcccccc
Confidence 6554444444333333445677778889999999999644
No 8
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.01 E-value=1.8e-09 Score=107.90 Aligned_cols=129 Identities=18% Similarity=0.134 Sum_probs=82.5
Q ss_pred CCCCEEEEEeccCCchHHHHHHHhCCcc-ceecCccccccceEEEEeeCCCCCCCceEEecCCCCCCcccccChHHHHHH
Q 004351 22 FDAPAVLVVGHQTDGKSALVEALMGFQF-NHVGGGTKTRRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEIQSF 100 (759)
Q Consensus 22 i~lPqIVVVG~QSsGKSSLLEAL~G~~f-p~~g~g~cTR~P~~l~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~l~~~ 100 (759)
-..|.|+|+|..++|||||+++|+|..+ ..++....
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~------------------------------------------- 63 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPG------------------------------------------- 63 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCC-------------------------------------------
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCC-------------------------------------------
Confidence 3578999999999999999999999763 21110000
Q ss_pred HHHHHhhhhhccCCCccccceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccc--eeEe
Q 004351 101 IEAENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREF--IILC 178 (759)
Q Consensus 101 Ie~~~~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~--IIL~ 178 (759)
.+.+.....+.......++|+||||+....... .....+..++..|+..... ++++
T Consensus 64 ----------------~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~------~~~~~~~~~~~~~~~~~~~~d~vi~ 121 (223)
T 4dhe_A 64 ----------------RTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPG------AAKAHWEQLLSSYLQTRPQLCGMIL 121 (223)
T ss_dssp ----------------SCCCEEEEEESCTTSCSEEEEECCCCCSSCCCS------THHHHHHHHHHHHHHHCTTEEEEEE
T ss_pred ----------------cccceEEEEecCCCCCcEEEEcCCCCCcccCCh------hhHHHHHHHHHHHHhcCcCcCEEEE
Confidence 000111112221223579999999987653322 1235667888999887554 3445
Q ss_pred ecccCCcCcHHHHHHHHHhCcCCCeEEEEecCCCccc
Q 004351 179 LEDCSDWSNATTRRVVMQIDPELKRTIIVSTKLDTKI 215 (759)
Q Consensus 179 V~~~~D~~~~~~l~lar~~Dp~g~RTIgVlTK~D~~~ 215 (759)
|.++.+........+.+.+...+...|.|+||.|+..
T Consensus 122 v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~ 158 (223)
T 4dhe_A 122 MMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLT 158 (223)
T ss_dssp EEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGSC
T ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccCC
Confidence 5555444445556666666656788999999999963
No 9
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.00 E-value=5.5e-10 Score=128.75 Aligned_cols=167 Identities=19% Similarity=0.254 Sum_probs=95.1
Q ss_pred CCCEEEEEeccCCchHHHHHHHhCCccc--eecCccccccceEEEEeeCCCCCCCceEEecCCCCCCcccccChHHHHHH
Q 004351 23 DAPAVLVVGHQTDGKSALVEALMGFQFN--HVGGGTKTRRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEIQSF 100 (759)
Q Consensus 23 ~lPqIVVVG~QSsGKSSLLEAL~G~~fp--~~g~g~cTR~P~~l~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~l~~~ 100 (759)
..|.|+|+|..|+|||||||+|+|..++ +++....|.+.+.+.. +... .+.++. .........+.++
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~--~~~~-----~i~~g~-~l~~~~~~~~~~L--- 132 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMH--GETE-----GTVPGN-ALVVDPEKPFRKL--- 132 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEEC--CSSS-----EEECCC-----------------
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEE--CCcc-----cccCCc-eeeecCcccHHHH---
Confidence 4689999999999999999999999985 4555556644443332 2110 111110 0000000011111
Q ss_pred HHHHHhhhhhccCCCccccceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeec
Q 004351 101 IEAENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLE 180 (759)
Q Consensus 101 Ie~~~~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~ 180 (759)
...+ ..|....+++.+.++....++||||||+.......-... -....++..|+...+.+|++|.
T Consensus 133 --------~~~g--~~~~~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~-----~~f~~~~~~~l~~aD~il~VvD 197 (550)
T 2qpt_A 133 --------NPFG--NTFLNRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRG-----YDFPAVLRWFAERVDLIILLFD 197 (550)
T ss_dssp ---------------CCCTTEEEEECCCHHHHHCEEEECCCBCC-------CC-----SCHHHHHHHHHHHCSEEEEEEE
T ss_pred --------hhhc--ccccccceEEeccccccCCEEEEECcCCCCcchhHHHHH-----hhHHHHHHHHHHhCCEEEEEEe
Confidence 1001 245556566655544445899999999976321100000 0134677888888887776664
Q ss_pred ccCCcCcHHHHHHHHHhCcCCCeEEEEecCCCccc
Q 004351 181 DCSDWSNATTRRVVMQIDPELKRTIIVSTKLDTKI 215 (759)
Q Consensus 181 ~~~D~~~~~~l~lar~~Dp~g~RTIgVlTK~D~~~ 215 (759)
+...-.......+++.+...+.+.+.|+||+|++.
T Consensus 198 a~~~~~~~~~~~~l~~l~~~~~pvilVlNK~Dl~~ 232 (550)
T 2qpt_A 198 AHKLEISDEFSEAIGALRGHEDKIRVVLNKADMVE 232 (550)
T ss_dssp TTSCCCCHHHHHHHHHTTTCGGGEEEEEECGGGSC
T ss_pred CCcCCCCHHHHHHHHHHHhcCCCEEEEEECCCccC
Confidence 43312344556677777777788999999999974
No 10
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=98.93 E-value=1e-08 Score=99.40 Aligned_cols=77 Identities=18% Similarity=0.113 Sum_probs=50.4
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccc--eeEeecccCCcCcHHHHHHHHHhCcCCCeEEEEecC
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREF--IILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTK 210 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~--IIL~V~~~~D~~~~~~l~lar~~Dp~g~RTIgVlTK 210 (759)
.++|+||||+...... .........+...|+..... +++.|.++.+........+.+.+...+...|.|+||
T Consensus 69 ~~~i~Dt~G~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK 142 (195)
T 3pqc_A 69 KYYFVDLPGYGYAKVS------KKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTK 142 (195)
T ss_dssp TEEEEECCCBSSSCCC------HHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred cEEEEECCCCccccCC------hhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEC
Confidence 5889999998654321 12245577888888887643 334455554444444455555555557889999999
Q ss_pred CCccc
Q 004351 211 LDTKI 215 (759)
Q Consensus 211 ~D~~~ 215 (759)
.|+..
T Consensus 143 ~Dl~~ 147 (195)
T 3pqc_A 143 MDKVK 147 (195)
T ss_dssp GGGSC
T ss_pred hhcCC
Confidence 99963
No 11
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=98.91 E-value=8.8e-09 Score=100.42 Aligned_cols=126 Identities=15% Similarity=0.147 Sum_probs=75.6
Q ss_pred CCCCEEEEEeccCCchHHHHHHHhCCccceecCccccccceEEEEeeCCCCCCCceEEecCCCCCCcccccChHHHHHHH
Q 004351 22 FDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEIQSFI 101 (759)
Q Consensus 22 i~lPqIVVVG~QSsGKSSLLEAL~G~~fp~~g~g~cTR~P~~l~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~l~~~I 101 (759)
-..+.|+|+|+.++|||||+++|+|..|...- .+. +.+
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~---------------~~~---~~~------------------------ 58 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLART---------------SSK---PGK------------------------ 58 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC------------------------------------------------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCcccc---------------CCC---CCc------------------------
Confidence 35689999999999999999999998754210 000 000
Q ss_pred HHHHhhhhhccCCCccccceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCcc--ceeEee
Q 004351 102 EAENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHRE--FIILCL 179 (759)
Q Consensus 102 e~~~~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~--~IIL~V 179 (759)
.+ +.....+ ...+.|+||||+..... + .........++..|+.... .++++|
T Consensus 59 --------------t~--~~~~~~~----~~~~~l~Dt~G~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~i~v 112 (195)
T 1svi_A 59 --------------TQ--TLNFYII----NDELHFVDVPGYGFAKV---S---KSEREAWGRMIETYITTREELKAVVQI 112 (195)
T ss_dssp ---------------C--CEEEEEE----TTTEEEEECCCBCCCSS---C---HHHHHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred --------------ee--eEEEEEE----CCcEEEEECCCCCcccc---C---HHHHHHHHHHHHHHHhhhhcCCEEEEE
Confidence 00 0011112 12699999999865432 1 1223556788888887662 234444
Q ss_pred cccCCcCcHHHHHHHHHhCcCCCeEEEEecCCCccc
Q 004351 180 EDCSDWSNATTRRVVMQIDPELKRTIIVSTKLDTKI 215 (759)
Q Consensus 180 ~~~~D~~~~~~l~lar~~Dp~g~RTIgVlTK~D~~~ 215 (759)
.++++..+.....+.+.+...+...+.|+||.|+..
T Consensus 113 ~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~ 148 (195)
T 1svi_A 113 VDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIP 148 (195)
T ss_dssp EETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSC
T ss_pred EECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCC
Confidence 454443444445555555556778999999999964
No 12
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=98.86 E-value=1.7e-08 Score=105.76 Aligned_cols=80 Identities=16% Similarity=0.156 Sum_probs=51.8
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcC-------------ccceeEeecccCCcCcHHHHHHHHHhCc
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQH-------------REFIILCLEDCSDWSNATTRRVVMQIDP 199 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~-------------~~~IIL~V~~~~D~~~~~~l~lar~~Dp 199 (759)
.|+|+||||+........ ........+.+-...|+.. .+.++++|.++..........+.+.+..
T Consensus 66 ~l~liDTpG~~d~~~~~~--~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~ 143 (274)
T 3t5d_A 66 LLTIVDTPGFGDAVDNSN--CWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE 143 (274)
T ss_dssp EEEEEECCCCSCCSCCTT--TTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT
T ss_pred EEEEEECCCccccccchh--hHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc
Confidence 799999999965432211 1122233333444667664 3455666666654455666778888876
Q ss_pred CCCeEEEEecCCCccc
Q 004351 200 ELKRTIIVSTKLDTKI 215 (759)
Q Consensus 200 ~g~RTIgVlTK~D~~~ 215 (759)
+..+|.|+||.|++.
T Consensus 144 -~~pvi~V~nK~D~~~ 158 (274)
T 3t5d_A 144 -KVNIIPLIAKADTLT 158 (274)
T ss_dssp -TSCEEEEESSGGGSC
T ss_pred -cCCEEEEEeccCCCC
Confidence 789999999999964
No 13
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.83 E-value=8.7e-09 Score=105.17 Aligned_cols=126 Identities=15% Similarity=0.219 Sum_probs=70.8
Q ss_pred CCCEEEEEeccCCchHHHHHHHhCCccceecCc--cccccceEEEEeeCCCCCCCceEEecCCCCCCcccccChHHHHHH
Q 004351 23 DAPAVLVVGHQTDGKSALVEALMGFQFNHVGGG--TKTRRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEIQSF 100 (759)
Q Consensus 23 ~lPqIVVVG~QSsGKSSLLEAL~G~~fp~~g~g--~cTR~P~~l~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~l~~~ 100 (759)
..+.|++||..++|||||+|+|+|..++..+.. .+|+.+.
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~-------------------------------------- 69 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCE-------------------------------------- 69 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCE--------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEE--------------------------------------
Confidence 457899999999999999999999887633211 1111100
Q ss_pred HHHHHhhhhhccCCCccccceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeec
Q 004351 101 IEAENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLE 180 (759)
Q Consensus 101 Ie~~~~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~ 180 (759)
...+.+ ....++|+||||+....... +.....+...+..+...++.+|+++.
T Consensus 70 --------------------~~~~~~---~~~~i~liDTpG~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~v~d 121 (239)
T 3lxx_A 70 --------------------KRSSSW---KETELVVVDTPGIFDTEVPN-----AETSKEIIRCILLTSPGPHALLLVVP 121 (239)
T ss_dssp --------------------EEEEEE---TTEEEEEEECCSCC-----C-----HHHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred --------------------EEEEEe---CCceEEEEECCCccCCCCCH-----HHHHHHHHHHHHhcCCCCcEEEEEee
Confidence 001111 11357899999998754322 12234556666667777777777664
Q ss_pred ccCCcCc--HHHHHHHH-HhCc-CCCeEEEEecCCCccc
Q 004351 181 DCSDWSN--ATTRRVVM-QIDP-ELKRTIIVSTKLDTKI 215 (759)
Q Consensus 181 ~~~D~~~--~~~l~lar-~~Dp-~g~RTIgVlTK~D~~~ 215 (759)
.. ++.. ..++.... .+.. ....+|.|+||.|++.
T Consensus 122 ~~-~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~ 159 (239)
T 3lxx_A 122 LG-RYTEEEHKATEKILKMFGERARSFMILIFTRKDDLG 159 (239)
T ss_dssp TT-CCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC-
T ss_pred CC-CCCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCC
Confidence 32 2322 22333222 2211 2346999999999863
No 14
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=98.80 E-value=1.4e-08 Score=105.67 Aligned_cols=122 Identities=17% Similarity=0.200 Sum_probs=76.1
Q ss_pred CCEEEEEeccCCchHHHHHHHhCCccceecCccccccceEEEEeeCCCCCCCceEEecCCCCCCcccccChHHHHHHHHH
Q 004351 24 APAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEIQSFIEA 103 (759)
Q Consensus 24 lPqIVVVG~QSsGKSSLLEAL~G~~fp~~g~g~cTR~P~~l~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~l~~~Ie~ 103 (759)
+|.|+++|+.++|||||+|+|+|..+. ++ +.+...
T Consensus 1 m~kI~lvG~~n~GKSTL~n~L~g~~~~-v~--------------~~pg~T------------------------------ 35 (256)
T 3iby_A 1 MTHALLIGNPNCGKTTLFNALTNANQR-VG--------------NWPGVT------------------------------ 35 (256)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHTTSEE-EE--------------ECTTSS------------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC-cc--------------CCCCce------------------------------
Confidence 489999999999999999999998754 21 111100
Q ss_pred HHhhhhhccCCCccccceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHh--cCccceeEeecc
Q 004351 104 ENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKM--QHREFIILCLED 181 (759)
Q Consensus 104 ~~~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi--~~~~~IIL~V~~ 181 (759)
+ +...-.+...+ ..++|+||||+.......+. ....+.+...|+ .+++.+|+++-.
T Consensus 36 -------------v--~~~~~~~~~~~-~~~~lvDtpG~~~~~~~~~~------~~~~e~i~~~~~~~~~~d~vi~VvDa 93 (256)
T 3iby_A 36 -------------V--EKKTGEFLLGE-HLIEITDLPGVYSLVANAEG------ISQDEQIAAQSVIDLEYDCIINVIDA 93 (256)
T ss_dssp -------------S--EEEEEEEEETT-EEEEEEECCCCSSCC------------CHHHHHHHHHHHHSCCSEEEEEEEG
T ss_pred -------------E--EEEEEEEEECC-eEEEEEeCCCcccccccccC------CCHHHHHHHHHHhhCCCCEEEEEeeC
Confidence 0 00011111111 26899999999765421110 022346778888 777777666543
Q ss_pred cCCcCcHHHHHHHHHhCcCCCeEEEEecCCCccc
Q 004351 182 CSDWSNATTRRVVMQIDPELKRTIIVSTKLDTKI 215 (759)
Q Consensus 182 ~~D~~~~~~l~lar~~Dp~g~RTIgVlTK~D~~~ 215 (759)
++ ....+.+..++...+.+.|.|+||.|+..
T Consensus 94 s~---~~~~~~l~~~l~~~~~pvilv~NK~Dl~~ 124 (256)
T 3iby_A 94 CH---LERHLYLTSQLFELGKPVVVALNMMDIAE 124 (256)
T ss_dssp GG---HHHHHHHHHHHTTSCSCEEEEEECHHHHH
T ss_pred CC---chhHHHHHHHHHHcCCCEEEEEEChhcCC
Confidence 32 23345667777777899999999999864
No 15
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=98.73 E-value=6.9e-08 Score=102.98 Aligned_cols=124 Identities=19% Similarity=0.243 Sum_probs=76.8
Q ss_pred CCCCEEEEEeccCCchHHHHHHHhCCccceecCc-cccccceEEEEeeCCCCCCCceEEecCCCCCCcccccChHHHHHH
Q 004351 22 FDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGG-TKTRRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEIQSF 100 (759)
Q Consensus 22 i~lPqIVVVG~QSsGKSSLLEAL~G~~fp~~g~g-~cTR~P~~l~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~l~~~ 100 (759)
+..+.|++||..++|||||+|+|+|..+..+... ..||..+
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i-------------------------------------- 46 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRL-------------------------------------- 46 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCE--------------------------------------
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEE--------------------------------------
Confidence 3345799999999999999999999887532110 0111000
Q ss_pred HHHHHhhhhhccCCCccccceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeec
Q 004351 101 IEAENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLE 180 (759)
Q Consensus 101 Ie~~~~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~ 180 (759)
.--+.. ....+.|+||||+..... .........+..|++..+.+++++.
T Consensus 47 ----------------------~~i~~~-~~~~l~l~DTpG~~~~~~--------~l~~~~~~~~~~~l~~ad~il~VvD 95 (301)
T 1wf3_A 47 ----------------------RGILTE-GRRQIVFVDTPGLHKPMD--------ALGEFMDQEVYEALADVNAVVWVVD 95 (301)
T ss_dssp ----------------------EEEEEE-TTEEEEEEECCCCCCCCS--------HHHHHHHHHHHHHTSSCSEEEEEEE
T ss_pred ----------------------EEEEEe-CCcEEEEecCccccchhh--------HHHHHHHHHHHHHHhcCCEEEEEEE
Confidence 000111 124688999999975321 1123456778899999887777665
Q ss_pred ccCCcCcHHHHHHHHHhCcC--CCeEEEEecCCCccc
Q 004351 181 DCSDWSNATTRRVVMQIDPE--LKRTIIVSTKLDTKI 215 (759)
Q Consensus 181 ~~~D~~~~~~l~lar~~Dp~--g~RTIgVlTK~D~~~ 215 (759)
..+.+ ......+.+.+... +...|.|+||.|+..
T Consensus 96 ~~~~~-~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~ 131 (301)
T 1wf3_A 96 LRHPP-TPEDELVARALKPLVGKVPILLVGNKLDAAK 131 (301)
T ss_dssp TTSCC-CHHHHHHHHHHGGGTTTSCEEEEEECGGGCS
T ss_pred CCCCC-ChHHHHHHHHHHhhcCCCCEEEEEECcccCC
Confidence 44333 22333343444333 678999999999963
No 16
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=98.72 E-value=5.6e-08 Score=93.94 Aligned_cols=122 Identities=20% Similarity=0.160 Sum_probs=74.4
Q ss_pred CCEEEEEeccCCchHHHHHHHhCCccceecCccccccceEEEEeeCCCCCCCceEEecCCCCCCcccccChHHHHHHHHH
Q 004351 24 APAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEIQSFIEA 103 (759)
Q Consensus 24 lPqIVVVG~QSsGKSSLLEAL~G~~fp~~g~g~cTR~P~~l~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~l~~~Ie~ 103 (759)
++.|+|+|+.++|||||+++|+|-.|+... .+..
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~---------------~~~~------------------------------- 34 (190)
T 2cxx_A 1 MATIIFAGRSNVGKSTLIYRLTGKKVRRGK---------------RPGV------------------------------- 34 (190)
T ss_dssp -CEEEEEEBTTSSHHHHHHHHHSCCCSSSS---------------STTC-------------------------------
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcCCccCC---------------CCCc-------------------------------
Confidence 478999999999999999999998765210 0000
Q ss_pred HHhhhhhccCCCccccceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcC-ccceeEee--c
Q 004351 104 ENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQH-REFIILCL--E 180 (759)
Q Consensus 104 ~~~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~-~~~IIL~V--~ 180 (759)
.+ +...+.+ ..+.|+||||+.....-+ ....+....+...|+.. .+.+++++ .
T Consensus 35 ------------t~--~~~~~~~-----~~~~l~Dt~G~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 90 (190)
T 2cxx_A 35 ------------TR--KIIEIEW-----KNHKIIDMPGFGFMMGLP-----KEVQERIKDEIVHFIEDNAKNIDVAVLVV 90 (190)
T ss_dssp ------------TT--SCEEEEE-----TTEEEEECCCBSCCTTSC-----HHHHHHHHHHHHHHHHHHGGGCCEEEEEE
T ss_pred ------------cc--eeEEEec-----CCEEEEECCCccccccCC-----HHHHHHHHHHHHHHHHhhhccCCEEEEEE
Confidence 01 1111122 179999999986533211 12235667888888886 66555443 4
Q ss_pred ccCCcCcH-----------HHHHHHHHhCcCCCeEEEEecCCCccc
Q 004351 181 DCSDWSNA-----------TTRRVVMQIDPELKRTIIVSTKLDTKI 215 (759)
Q Consensus 181 ~~~D~~~~-----------~~l~lar~~Dp~g~RTIgVlTK~D~~~ 215 (759)
+...+.+. ....+.+.+...+...+.|+||.|+..
T Consensus 91 d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 136 (190)
T 2cxx_A 91 DGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIK 136 (190)
T ss_dssp ETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCS
T ss_pred cchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccC
Confidence 44322111 112344444445778999999999964
No 17
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=98.68 E-value=1.1e-07 Score=99.20 Aligned_cols=30 Identities=27% Similarity=0.444 Sum_probs=26.3
Q ss_pred CCCCCEEEEEeccCCchHHHHHHHhCCccc
Q 004351 21 PFDAPAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 21 ~i~lPqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
...-+.|+|+|..++|||||+|+|+|-.+.
T Consensus 36 ~~~~~~I~vvG~~g~GKSSLin~l~~~~~~ 65 (270)
T 1h65_A 36 DVNSLTILVMGKGGVGKSSTVNSIIGERVV 65 (270)
T ss_dssp TCCEEEEEEEESTTSSHHHHHHHHHTSCCS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHhCCCcc
Confidence 345679999999999999999999998764
No 18
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.67 E-value=3.9e-08 Score=110.54 Aligned_cols=126 Identities=20% Similarity=0.291 Sum_probs=76.0
Q ss_pred CCCCCCEEEEEeccCCchHHHHHHHhCCccceecCccccccceEEEEeeCCCCCCCceEEecCCCCCCcccccChHHHHH
Q 004351 20 TPFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEIQS 99 (759)
Q Consensus 20 ~~i~lPqIVVVG~QSsGKSSLLEAL~G~~fp~~g~g~cTR~P~~l~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~l~~ 99 (759)
.....|.|++||..++|||||+|+|+|..+..+... +
T Consensus 19 ~~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~--------------~----------------------------- 55 (456)
T 4dcu_A 19 SHMGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDT--------------P----------------------------- 55 (456)
T ss_dssp ----CCEEEEECSSSSSHHHHHHHHEEEEEC-------------------------------------------------
T ss_pred hhcCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCC--------------C-----------------------------
Confidence 456789999999999999999999999665322110 0
Q ss_pred HHHHHHhhhhhccCCCccccceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEee
Q 004351 100 FIEAENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCL 179 (759)
Q Consensus 100 ~Ie~~~~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V 179 (759)
+.+.+.....+... ...++|+||||+.....+ ....+..++..|+...+.+|++|
T Consensus 56 ----------------g~t~~~~~~~~~~~-~~~~~liDT~G~~~~~~~--------~~~~~~~~~~~~~~~ad~il~Vv 110 (456)
T 4dcu_A 56 ----------------GVTRDRIYSSAEWL-NYDFNLIDTGGIDIGDEP--------FLAQIRQQAEIAMDEADVIIFMV 110 (456)
T ss_dssp ---------------------CEEEECTTC-SSCCEEECCCC------C--------CHHHHHHHHHHHHHHCSEEEEEE
T ss_pred ----------------CcceeEEEEEEEEC-CceEEEEECCCCCCcchH--------HHHHHHHHHHhhHhhCCEEEEEE
Confidence 01111112222221 247899999999732211 13566788889999888666655
Q ss_pred cccCCcCcHHHHHHHHHhCcCCCeEEEEecCCCcc
Q 004351 180 EDCSDWSNATTRRVVMQIDPELKRTIIVSTKLDTK 214 (759)
Q Consensus 180 ~~~~D~~~~~~l~lar~~Dp~g~RTIgVlTK~D~~ 214 (759)
++.+..+.....+++.+...+...|.|+||.|+.
T Consensus 111 -D~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 111 -NGREGVTAADEEVAKILYRTKKPVVLAVNKLDNT 144 (456)
T ss_dssp -ESSSCSCHHHHHHHHHHTTCCSCEEEEEECC---
T ss_pred -eCCCCCChHHHHHHHHHHHcCCCEEEEEECccch
Confidence 4444445556677777777889999999999985
No 19
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=98.67 E-value=8.2e-08 Score=99.07 Aligned_cols=76 Identities=18% Similarity=0.247 Sum_probs=46.4
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcH--HHHHHHHHh-CcC-CCeEEEEe
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNA--TTRRVVMQI-DPE-LKRTIIVS 208 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~--~~l~lar~~-Dp~-g~RTIgVl 208 (759)
.+.||||||+....... +.....+...+..|++..+.+|+++... ++... ...+.++++ .+. +...|.|+
T Consensus 72 ~i~iiDTpG~~~~~~~~-----~~~~~~i~~~~~~~~~~~d~il~V~d~~-~~~~~~~~~~~~l~~~~~~~~~~~~i~vv 145 (260)
T 2xtp_A 72 EIVIIDTPDMFSWKDHC-----EALYKEVQRCYLLSAPGPHVLLLVTQLG-RYTSQDQQAAQRVKEIFGEDAMGHTIVLF 145 (260)
T ss_dssp EEEEEECCGGGGSSCCC-----HHHHHHHHHHHHHHTTCCSEEEEEEETT-CCCHHHHHHHHHHHHHHCGGGGGGEEEEE
T ss_pred EEEEEECcCCCCCCCCH-----HHHHHHHHHHHHhcCCCCcEEEEEEeCC-CCCHHHHHHHHHHHHHhCchhhccEEEEE
Confidence 58999999998654211 1223345566677888888888776544 33322 233444443 211 34688888
Q ss_pred c-CCCcc
Q 004351 209 T-KLDTK 214 (759)
Q Consensus 209 T-K~D~~ 214 (759)
| |.|+.
T Consensus 146 ~nK~Dl~ 152 (260)
T 2xtp_A 146 THKEDLN 152 (260)
T ss_dssp ECGGGGT
T ss_pred EcccccC
Confidence 8 99996
No 20
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=98.67 E-value=1.2e-07 Score=101.11 Aligned_cols=125 Identities=19% Similarity=0.322 Sum_probs=79.0
Q ss_pred CCCEEEEEeccCCchHHHHHHHhCCccceecCcc-ccccceEEEEeeCCCCCCCceEEecCCCCCCcccccChHHHHHHH
Q 004351 23 DAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGT-KTRRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEIQSFI 101 (759)
Q Consensus 23 ~lPqIVVVG~QSsGKSSLLEAL~G~~fp~~g~g~-cTR~P~~l~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~l~~~I 101 (759)
+...|+++|..++|||||+|+|+|..+..+.... .||.
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~----------------------------------------- 47 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRM----------------------------------------- 47 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCS-----------------------------------------
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceee-----------------------------------------
Confidence 3446999999999999999999998875321111 1111
Q ss_pred HHHHhhhhhccCCCccccceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecc
Q 004351 102 EAENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLED 181 (759)
Q Consensus 102 e~~~~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~ 181 (759)
.+...+..+....++||||||+....... ...+....++..|++..+.+++++..
T Consensus 48 -------------------~~~~~~~~~~~~~i~lvDTPG~~~~~~~~------~l~~~~~~~~~~~l~~aD~il~VvD~ 102 (308)
T 3iev_A 48 -------------------RVLGVKNIPNEAQIIFLDTPGIYEPKKSD------VLGHSMVEIAKQSLEEADVILFMIDA 102 (308)
T ss_dssp -------------------CEEEEEEETTTEEEEEEECCCCCCCCTTC------HHHHHHHHHHHHHHHHCSEEEEEEET
T ss_pred -------------------EEEEEEecCCCCeEEEEECcCCCccccch------hHHHHHHHHHHHHhhcCCEEEEEEeC
Confidence 00111111112358899999998643111 12345567788899888877776654
Q ss_pred cCCcCcHHHHHH-HHHhCcCCCeEEEEecCCCcc
Q 004351 182 CSDWSNATTRRV-VMQIDPELKRTIIVSTKLDTK 214 (759)
Q Consensus 182 ~~D~~~~~~l~l-ar~~Dp~g~RTIgVlTK~D~~ 214 (759)
+. ........+ .+.+...+...|.|+||.|+.
T Consensus 103 ~~-~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~ 135 (308)
T 3iev_A 103 TE-GWRPRDEEIYQNFIKPLNKPVIVVINKIDKI 135 (308)
T ss_dssp TT-BSCHHHHHHHHHHTGGGCCCEEEEEECGGGS
T ss_pred CC-CCCchhHHHHHHHHHhcCCCEEEEEECccCC
Confidence 43 233333444 555555677899999999996
No 21
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=98.66 E-value=8.7e-08 Score=89.86 Aligned_cols=71 Identities=18% Similarity=0.340 Sum_probs=45.8
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcH--HHHHHHHHhCcCCCeEEEEecC
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNA--TTRRVVMQIDPELKRTIIVSTK 210 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~--~~l~lar~~Dp~g~RTIgVlTK 210 (759)
.+.|+|+||...... . ......+...|++..+.+|+++...+.+... ...+..+. .+...+.|+||
T Consensus 50 ~~~l~Dt~G~~~~~~-~--------~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~---~~~p~ilv~nK 117 (161)
T 2dyk_A 50 RFLLVDTGGLWSGDK-W--------EKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRR---KGKPVILVATK 117 (161)
T ss_dssp EEEEEECGGGCSSSS-C--------CHHHHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHH---HTCCEEEEEEC
T ss_pred eEEEEECCCCCCccc-h--------HHHHHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHh---cCCCEEEEEEC
Confidence 578999999976421 0 1334577788898888887766443322222 22333333 45679999999
Q ss_pred CCccc
Q 004351 211 LDTKI 215 (759)
Q Consensus 211 ~D~~~ 215 (759)
.|+..
T Consensus 118 ~Dl~~ 122 (161)
T 2dyk_A 118 VDDPK 122 (161)
T ss_dssp CCSGG
T ss_pred ccccc
Confidence 99963
No 22
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=98.64 E-value=1.6e-07 Score=94.92 Aligned_cols=27 Identities=15% Similarity=0.327 Sum_probs=24.8
Q ss_pred CCEEEEEeccCCchHHHHHHHhCCccc
Q 004351 24 APAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 24 lPqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.+.|+|+|+.++|||||+++|+|-.|.
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~~~~ 55 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRANVD 55 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTTCEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCc
Confidence 468999999999999999999998875
No 23
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=98.61 E-value=4.7e-08 Score=93.48 Aligned_cols=115 Identities=23% Similarity=0.319 Sum_probs=73.2
Q ss_pred CCCEEEEEeccCCchHHHHHHHhCCccceecCccccccceEEEEeeCCCCCCCceEEecCCCCCCcccccChHHHHHHHH
Q 004351 23 DAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEIQSFIE 102 (759)
Q Consensus 23 ~lPqIVVVG~QSsGKSSLLEAL~G~~fp~~g~g~cTR~P~~l~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~l~~~Ie 102 (759)
..+.|+|+|+.++|||||+++|++-.|......+.|.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~------------------------------------------- 43 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQ------------------------------------------- 43 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSST-------------------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeE-------------------------------------------
Confidence 5689999999999999999999998876321000000
Q ss_pred HHHhhhhhccCCCccccceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeeccc
Q 004351 103 AENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDC 182 (759)
Q Consensus 103 ~~~~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~ 182 (759)
.+... .+.+. ...++|+||||..... .+...|+...+.+|+++ +.
T Consensus 44 -------------~~~~~--~~~~~---~~~~~l~Dt~G~~~~~----------------~~~~~~~~~~d~~i~v~-d~ 88 (178)
T 2lkc_A 44 -------------HIGAY--QVTVN---DKKITFLDTPGHEAFT----------------TMRARGAQVTDIVILVV-AA 88 (178)
T ss_dssp -------------TCCCC--EEEET---TEEEEESCCCSSSSSS----------------CSCCSSCCCCCEEEEEE-ET
T ss_pred -------------eeeEE--EEEeC---CceEEEEECCCCHHHH----------------HHHHHHHhhCCEEEEEE-EC
Confidence 00000 11111 1246799999975422 12235666667666665 44
Q ss_pred CCcCcHHHHHHHHHhCcCCCeEEEEecCCCccc
Q 004351 183 SDWSNATTRRVVMQIDPELKRTIIVSTKLDTKI 215 (759)
Q Consensus 183 ~D~~~~~~l~lar~~Dp~g~RTIgVlTK~D~~~ 215 (759)
++......++.++.+...+...+.|+||.|+..
T Consensus 89 ~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~ 121 (178)
T 2lkc_A 89 DDGVMPQTVEAINHAKAANVPIIVAINKMDKPE 121 (178)
T ss_dssp TCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSC
T ss_pred CCCCcHHHHHHHHHHHhCCCCEEEEEECccCCc
Confidence 444456667777777666788999999999963
No 24
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=98.58 E-value=2.7e-07 Score=95.90 Aligned_cols=29 Identities=38% Similarity=0.517 Sum_probs=25.3
Q ss_pred CCCCEEEEEeccCCchHHHHHHHhCCccc
Q 004351 22 FDAPAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 22 i~lPqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
..-..|+|+|+.++|||||+|+|+|..+.
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~ 62 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVV 62 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCc
Confidence 35578999999999999999999997653
No 25
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.57 E-value=1.4e-07 Score=105.43 Aligned_cols=74 Identities=11% Similarity=0.236 Sum_probs=48.0
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHHHHHhCcCCCeEEEEecCCC
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKLD 212 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~RTIgVlTK~D 212 (759)
.+.|+||||+....... + ...+..++..|++..+.+|++| ++.+..+.....+++.+...+..+|.|+||+|
T Consensus 50 ~~~l~DT~G~~~~~~~~----~---~~~~~~~~~~~~~~ad~il~V~-D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D 121 (439)
T 1mky_A 50 TFKLVDTCGVFDNPQDI----I---SQKMKEVTLNMIREADLVLFVV-DGKRGITKEDESLADFLRKSTVDTILVANKAE 121 (439)
T ss_dssp EEEEEECTTTTSSGGGC----C---CHHHHHHHHHHHTTCSEEEEEE-ETTTCCCHHHHHHHHHHHHHTCCEEEEEESCC
T ss_pred EEEEEECCCccccccch----H---HHHHHHHHHHHHHhCCEEEEEE-ECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCC
Confidence 47899999997532100 1 1346688889999998777766 43322333333444444445678999999999
Q ss_pred cc
Q 004351 213 TK 214 (759)
Q Consensus 213 ~~ 214 (759)
+.
T Consensus 122 ~~ 123 (439)
T 1mky_A 122 NL 123 (439)
T ss_dssp SH
T ss_pred Cc
Confidence 84
No 26
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=98.57 E-value=1.4e-07 Score=99.10 Aligned_cols=122 Identities=16% Similarity=0.175 Sum_probs=70.3
Q ss_pred CCEEEEEeccCCchHHHHHHHhCCccceecCccccccceEEEEeeCCCCCCCceEEecCCCCCCcccccChHHHHHHHHH
Q 004351 24 APAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEIQSFIEA 103 (759)
Q Consensus 24 lPqIVVVG~QSsGKSSLLEAL~G~~fp~~g~g~cTR~P~~l~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~l~~~Ie~ 103 (759)
-+.|+++|..++|||||+|+|+|..+. ++ +.+..
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~~-v~--------------~~~g~------------------------------- 36 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQR-VG--------------NWAGV------------------------------- 36 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEE-EE--------------ECTTS-------------------------------
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCcc-cC--------------CCCCe-------------------------------
Confidence 468999999999999999999998864 32 11110
Q ss_pred HHhhhhhccCCCccccceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHh--cCccceeEeecc
Q 004351 104 ENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKM--QHREFIILCLED 181 (759)
Q Consensus 104 ~~~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi--~~~~~IIL~V~~ 181 (759)
+-+...-.+... ...+.|+||||+.....-.... ...+.+.+.|+ .+.+.+|+++ +
T Consensus 37 --------------t~~~~~~~~~~~-~~~~~liDtpG~~~~~~~~~~~------~~~e~i~~~~~~~~~~d~ii~Vv-D 94 (274)
T 3i8s_A 37 --------------TVERKEGQFSTT-DHQVTLVDLPGTYSLTTISSQT------SLDEQIACHYILSGDADLLINVV-D 94 (274)
T ss_dssp --------------SSEEEEEEEECS-SCEEEEEECCCCSCSCC----C------CHHHHHHHHHHHHTCCSEEEEEE-E
T ss_pred --------------eEEEEEEEEEeC-CCceEEEECcCCCccccccccC------CHHHHHHHHHHhhcCCCEEEEEe-c
Confidence 000111112221 2457899999997644211100 11234566676 4666555544 4
Q ss_pred cCCcCcHHHHHHHHHhCcCCCeEEEEecCCCccc
Q 004351 182 CSDWSNATTRRVVMQIDPELKRTIIVSTKLDTKI 215 (759)
Q Consensus 182 ~~D~~~~~~l~lar~~Dp~g~RTIgVlTK~D~~~ 215 (759)
+++. ...+.+..++...+...|.|+||.|+..
T Consensus 95 ~~~~--~~~~~~~~~l~~~~~p~ivv~NK~Dl~~ 126 (274)
T 3i8s_A 95 ASNL--ERNLYLTLQLLELGIPCIVALNMLDIAE 126 (274)
T ss_dssp GGGH--HHHHHHHHHHHHHTCCEEEEEECHHHHH
T ss_pred CCCh--HHHHHHHHHHHhcCCCEEEEEECccchh
Confidence 4322 2233344444344778999999999853
No 27
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=98.55 E-value=1.3e-07 Score=97.71 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=23.9
Q ss_pred CEEEEEeccCCchHHHHHHHhCCccc
Q 004351 25 PAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
..|++||..++|||||+|+|+|..+.
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~~~~ 47 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQRRF 47 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTSCCC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCc
Confidence 47999999999999999999998865
No 28
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=98.53 E-value=3.7e-07 Score=90.78 Aligned_cols=66 Identities=23% Similarity=0.248 Sum_probs=42.3
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHHHHHhCc----CCCeEEEEe
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDP----ELKRTIIVS 208 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~~Dp----~g~RTIgVl 208 (759)
.+.|+||||. .....+...|++..+.+|+++...+...-.........+.. .+...|.|+
T Consensus 85 ~l~l~Dt~G~----------------~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~ 148 (217)
T 2f7s_A 85 HLQLWDTAGQ----------------ERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIG 148 (217)
T ss_dssp EEEEEEEESH----------------HHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEE
T ss_pred EEEEEECCCc----------------HhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEE
Confidence 5789999994 12346788899888887776643321111222233344432 467899999
Q ss_pred cCCCcc
Q 004351 209 TKLDTK 214 (759)
Q Consensus 209 TK~D~~ 214 (759)
||.|+.
T Consensus 149 NK~Dl~ 154 (217)
T 2f7s_A 149 NKADLP 154 (217)
T ss_dssp ECTTCG
T ss_pred ECCccc
Confidence 999985
No 29
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=98.53 E-value=2.2e-07 Score=90.02 Aligned_cols=29 Identities=24% Similarity=0.364 Sum_probs=25.9
Q ss_pred CCCEEEEEeccCCchHHHHHHHhCCccce
Q 004351 23 DAPAVLVVGHQTDGKSALVEALMGFQFNH 51 (759)
Q Consensus 23 ~lPqIVVVG~QSsGKSSLLEAL~G~~fp~ 51 (759)
...+|+|+|+.++|||||+++|+|..|+.
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~ 34 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTFHE 34 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCCCS
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCC
Confidence 34689999999999999999999998863
No 30
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=98.50 E-value=2.9e-07 Score=89.59 Aligned_cols=30 Identities=23% Similarity=0.389 Sum_probs=26.4
Q ss_pred CCCCCEEEEEeccCCchHHHHHHHhCCccc
Q 004351 21 PFDAPAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 21 ~i~lPqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.-..+.|+|+|+.++|||||+++|+|..++
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~ 74 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVR 74 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 356789999999999999999999998875
No 31
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=98.50 E-value=3.2e-07 Score=86.05 Aligned_cols=66 Identities=17% Similarity=0.175 Sum_probs=41.6
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCc----HHHH-HHHHHhCcCCCeEEEE
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSN----ATTR-RVVMQIDPELKRTIIV 207 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~----~~~l-~lar~~Dp~g~RTIgV 207 (759)
.+.|+|+||... ...+...|++..+.+|+++...+ ... ..++ .+.+.....+...+.|
T Consensus 53 ~~~l~D~~G~~~----------------~~~~~~~~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~i~~~~~~~~~piilv 115 (168)
T 1u8z_A 53 QIDILDTAGQED----------------YAAIRDNYFRSGEGFLCVFSITE-MESFAATADFREQILRVKEDENVPFLLV 115 (168)
T ss_dssp EEEEEECCC-------------------CHHHHHHHHHHCSEEEEEEETTC-HHHHHHHHHHHHHHHHHHCCTTSCEEEE
T ss_pred EEEEEECCCcch----------------hHHHHHHHhhcCCEEEEEEECCC-HHHHHHHHHHHHHHHHhcCCCCCcEEEE
Confidence 578999999532 12566788888888877764322 111 1122 2334445557889999
Q ss_pred ecCCCccc
Q 004351 208 STKLDTKI 215 (759)
Q Consensus 208 lTK~D~~~ 215 (759)
+||.|+..
T Consensus 116 ~nK~Dl~~ 123 (168)
T 1u8z_A 116 GNKSDLED 123 (168)
T ss_dssp EECGGGGG
T ss_pred EECccccc
Confidence 99999964
No 32
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=98.49 E-value=2.6e-07 Score=103.33 Aligned_cols=74 Identities=18% Similarity=0.230 Sum_probs=45.6
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHHHHHhCcCCCeEEEEecCC
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKL 211 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~RTIgVlTK~ 211 (759)
..++|+||||+..... .....+..++..|++..+.+|++| ++.+..+.....+++.+...+...|.|+||.
T Consensus 51 ~~~~l~DT~G~~~~~~--------~~~~~~~~~~~~~~~~ad~il~vv-D~~~~~~~~d~~~~~~l~~~~~pvilv~NK~ 121 (436)
T 2hjg_A 51 YDFNLIDTGGIDIGDE--------PFLAQIRQQAEIAMDEADVIIFMV-NGREGVTAADEEVAKILYRTKKPVVLAVNKL 121 (436)
T ss_dssp SCCEEEC-----------------CHHHHHHHHHHHHHHHCSEEEEEE-ETTTCSCHHHHHHHHHHTTCCSCEEEEEECC
T ss_pred ceEEEEECCCCCCcch--------hHHHHHHHHHHHHHHhCCEEEEEE-eCCCCCCHHHHHHHHHHHHcCCCEEEEEECc
Confidence 3689999999964321 112456688888998888776655 4433334445567777777788999999999
Q ss_pred Ccc
Q 004351 212 DTK 214 (759)
Q Consensus 212 D~~ 214 (759)
|+.
T Consensus 122 D~~ 124 (436)
T 2hjg_A 122 DNT 124 (436)
T ss_dssp CC-
T ss_pred cCc
Confidence 985
No 33
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=98.49 E-value=1.3e-07 Score=90.10 Aligned_cols=31 Identities=26% Similarity=0.485 Sum_probs=25.3
Q ss_pred CCCCCCEEEEEeccCCchHHHHHHHhCCccc
Q 004351 20 TPFDAPAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 20 ~~i~lPqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.+..-..|+|+|+.++|||||+++|++-.|+
T Consensus 10 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~ 40 (179)
T 2y8e_A 10 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFD 40 (179)
T ss_dssp --CEEEEEEEEESTTSSHHHHHHHHHHSCCC
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 3344468999999999999999999987775
No 34
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=98.48 E-value=2.9e-07 Score=88.65 Aligned_cols=67 Identities=18% Similarity=0.128 Sum_probs=44.7
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCC--cC-cHHHHHHHHHhCcCCCeEEEEec
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSD--WS-NATTRRVVMQIDPELKRTIIVST 209 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D--~~-~~~~l~lar~~Dp~g~RTIgVlT 209 (759)
.+.|+|+||... ...+...|+++.+.+|+++...+. +. ...++..++.....+...+.|+|
T Consensus 60 ~~~l~Dt~G~~~----------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~n 123 (186)
T 2bme_A 60 KLQIWDTAGQER----------------FRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGN 123 (186)
T ss_dssp EEEEEEECCSGG----------------GHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred EEEEEeCCCcHH----------------HHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEE
Confidence 578999999522 235678899998888877643221 11 12234444555556788999999
Q ss_pred CCCccc
Q 004351 210 KLDTKI 215 (759)
Q Consensus 210 K~D~~~ 215 (759)
|.|+..
T Consensus 124 K~Dl~~ 129 (186)
T 2bme_A 124 KKDLDA 129 (186)
T ss_dssp CGGGGG
T ss_pred Cccccc
Confidence 999953
No 35
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=98.48 E-value=4.3e-07 Score=88.28 Aligned_cols=68 Identities=16% Similarity=0.153 Sum_probs=45.4
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCC--c-CcHHHHHHHHHhCcCCCeEEEEec
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSD--W-SNATTRRVVMQIDPELKRTIIVST 209 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D--~-~~~~~l~lar~~Dp~g~RTIgVlT 209 (759)
.+.|+|+||.... ..+...|++..+.+|+++...+. + ....++..+....+.+...|.|+|
T Consensus 66 ~~~i~Dt~G~~~~----------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~n 129 (196)
T 3tkl_A 66 KLQIWDTAGQERF----------------RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 129 (196)
T ss_dssp EEEEEEECCSGGG----------------CTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred EEEEEECCCcHhh----------------hhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEE
Confidence 5889999995321 24566788888888776643221 1 112345556666666789999999
Q ss_pred CCCcccc
Q 004351 210 KLDTKIP 216 (759)
Q Consensus 210 K~D~~~~ 216 (759)
|.|+...
T Consensus 130 K~Dl~~~ 136 (196)
T 3tkl_A 130 KCDLTTK 136 (196)
T ss_dssp CTTCTTT
T ss_pred Ccccccc
Confidence 9998643
No 36
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=98.47 E-value=3.6e-07 Score=89.48 Aligned_cols=67 Identities=22% Similarity=0.279 Sum_probs=45.7
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccC--CcCc-HHHHHHHHHhCcCCCeEEEEec
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCS--DWSN-ATTRRVVMQIDPELKRTIIVST 209 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~--D~~~-~~~l~lar~~Dp~g~RTIgVlT 209 (759)
.++|+|+||... ...+...|+++.+.+|+++...+ .+.. ..++..++...+.+...|.|+|
T Consensus 76 ~l~l~Dt~G~~~----------------~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~N 139 (192)
T 2il1_A 76 RLQIWDTAGQER----------------FNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGN 139 (192)
T ss_dssp EEEEEEECCSGG----------------GHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred EEEEEeCCCcHH----------------HHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEE
Confidence 588999999522 22566788888887777664322 1111 2345666777777889999999
Q ss_pred CCCccc
Q 004351 210 KLDTKI 215 (759)
Q Consensus 210 K~D~~~ 215 (759)
|.|+..
T Consensus 140 K~Dl~~ 145 (192)
T 2il1_A 140 KLDCET 145 (192)
T ss_dssp CGGGGG
T ss_pred Cccccc
Confidence 999853
No 37
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=98.47 E-value=8e-07 Score=84.55 Aligned_cols=67 Identities=13% Similarity=0.139 Sum_probs=44.4
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCC--cC-cHHHHHHHHHhCcCCCeEEEEec
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSD--WS-NATTRRVVMQIDPELKRTIIVST 209 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D--~~-~~~~l~lar~~Dp~g~RTIgVlT 209 (759)
.+.|+|+||... ...+...|+++.+.+|+++...+. +. ...++..++.....+...+.|+|
T Consensus 65 ~~~l~Dt~G~~~----------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~n 128 (179)
T 1z0f_A 65 KLQIWDTAGQER----------------FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGN 128 (179)
T ss_dssp EEEEEECTTGGG----------------TCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred EEEEEECCCChH----------------hhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEE
Confidence 588999999532 124677888888888777643321 11 12234445565556788999999
Q ss_pred CCCccc
Q 004351 210 KLDTKI 215 (759)
Q Consensus 210 K~D~~~ 215 (759)
|.|+..
T Consensus 129 K~Dl~~ 134 (179)
T 1z0f_A 129 KADLEA 134 (179)
T ss_dssp CTTCGG
T ss_pred Cccccc
Confidence 999964
No 38
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=98.46 E-value=4.1e-07 Score=94.68 Aligned_cols=118 Identities=22% Similarity=0.275 Sum_probs=71.2
Q ss_pred CCEEEEEeccCCchHHHHHHHhCCccceecCccccccceEEEEeeCCCCCCCceEEecCCCCCCcccccChHHHHHHHHH
Q 004351 24 APAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEIQSFIEA 103 (759)
Q Consensus 24 lPqIVVVG~QSsGKSSLLEAL~G~~fp~~g~g~cTR~P~~l~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~l~~~Ie~ 103 (759)
.+.|+++|+.++|||||+++|+|..+. ++. .+..
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~~~-~~~--------------~pg~------------------------------- 38 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTKQY-VAN--------------WPGV------------------------------- 38 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTCEE-EEE--------------CTTS-------------------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCc-ccC--------------CCCc-------------------------------
Confidence 367999999999999999999998875 220 0100
Q ss_pred HHhhhhhccCCCccccceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhc--CccceeEeecc
Q 004351 104 ENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQ--HREFIILCLED 181 (759)
Q Consensus 104 ~~~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~--~~~~IIL~V~~ 181 (759)
.+... ...+... ...+.|+||||........ .-+.+...|+. +.+.+|+ |.+
T Consensus 39 ------------tv~~~--~~~~~~~-~~~~~l~DtpG~~~~~~~~----------~~e~v~~~~~~~~~~d~ii~-V~D 92 (258)
T 3a1s_A 39 ------------TVEKK--EGVFTYK-GYTINLIDLPGTYSLGYSS----------IDEKIARDYLLKGDADLVIL-VAD 92 (258)
T ss_dssp ------------CCEEE--EEEEEET-TEEEEEEECCCCSSCCSSS----------HHHHHHHHHHHHSCCSEEEE-EEE
T ss_pred ------------eEEEE--EEEEEEC-CeEEEEEECCCcCccCCCC----------HHHHHHHHHHhhcCCCEEEE-EeC
Confidence 00000 1111111 2468999999997643211 11256677774 5555554 444
Q ss_pred cCCcCcHHHHHHHHHhCcCCCeEEEEecCCCccc
Q 004351 182 CSDWSNATTRRVVMQIDPELKRTIIVSTKLDTKI 215 (759)
Q Consensus 182 ~~D~~~~~~l~lar~~Dp~g~RTIgVlTK~D~~~ 215 (759)
+++.. ..+.+..++...+..+|.|+||.|+..
T Consensus 93 ~t~~~--~~~~~~~~l~~~~~pvilv~NK~Dl~~ 124 (258)
T 3a1s_A 93 SVNPE--QSLYLLLEILEMEKKVILAMTAIDEAK 124 (258)
T ss_dssp TTSCH--HHHHHHHHHHTTTCCEEEEEECHHHHH
T ss_pred CCchh--hHHHHHHHHHhcCCCEEEEEECcCCCC
Confidence 43332 234455555556789999999999853
No 39
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=98.46 E-value=3.5e-07 Score=87.20 Aligned_cols=28 Identities=32% Similarity=0.379 Sum_probs=24.9
Q ss_pred CCCEEEEEeccCCchHHHHHHHhCCccc
Q 004351 23 DAPAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 23 ~lPqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
..+.|+|+|+.++|||||+++|+|..|.
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~~~ 35 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSYFV 35 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSSCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCcCc
Confidence 4568999999999999999999998764
No 40
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=98.44 E-value=3e-07 Score=86.78 Aligned_cols=66 Identities=21% Similarity=0.214 Sum_probs=42.4
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCC--cCc-HHHHHHHHHhCcCCCeEEEEec
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSD--WSN-ATTRRVVMQIDPELKRTIIVST 209 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D--~~~-~~~l~lar~~Dp~g~RTIgVlT 209 (759)
.+.|+|+||..... .+...|+++.+.+|+++...+. +.. ..++..++...+.+...+.|+|
T Consensus 53 ~~~l~D~~G~~~~~----------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~n 116 (170)
T 1g16_A 53 KLQIWDTAGQERFR----------------TITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGN 116 (170)
T ss_dssp EEEEECCTTGGGTS----------------CCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred EEEEEeCCCChhhh----------------hhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEE
Confidence 57899999964321 3345678888877776643221 111 2344555555556788999999
Q ss_pred CCCcc
Q 004351 210 KLDTK 214 (759)
Q Consensus 210 K~D~~ 214 (759)
|.|+.
T Consensus 117 K~Dl~ 121 (170)
T 1g16_A 117 KSDME 121 (170)
T ss_dssp CTTCT
T ss_pred CccCC
Confidence 99983
No 41
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=98.44 E-value=7.6e-07 Score=88.30 Aligned_cols=28 Identities=36% Similarity=0.427 Sum_probs=24.5
Q ss_pred CCCEEEEEeccCCchHHHHHHHhCCccc
Q 004351 23 DAPAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 23 ~lPqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
..+.|+|+|+.++|||||+++|++-.|+
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~ 33 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYR 33 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcc
Confidence 4578999999999999999999998876
No 42
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=98.44 E-value=1.2e-06 Score=84.66 Aligned_cols=74 Identities=16% Similarity=0.228 Sum_probs=43.5
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccC--CcCcHHHHHHHHHhCcCCCeEEEEecC
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCS--DWSNATTRRVVMQIDPELKRTIIVSTK 210 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~--D~~~~~~l~lar~~Dp~g~RTIgVlTK 210 (759)
.+.++||||+..... ..+. ..+ .....|++..+.+|+++-..+ ......++...++..+.+...|.|+||
T Consensus 53 ~~~l~Dt~G~~~~~~-----~~~~--~~~-~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK 124 (172)
T 2gj8_A 53 PLHIIDTAGLREASD-----EVER--IGI-ERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNK 124 (172)
T ss_dssp EEEEEECCCCSCCSS-----HHHH--HHH-HHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEEC
T ss_pred EEEEEECCCcccchh-----HHHH--HHH-HHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEEC
Confidence 378999999965320 0110 011 123457778887777664322 222334444555555567789999999
Q ss_pred CCcc
Q 004351 211 LDTK 214 (759)
Q Consensus 211 ~D~~ 214 (759)
.|+.
T Consensus 125 ~Dl~ 128 (172)
T 2gj8_A 125 ADIT 128 (172)
T ss_dssp HHHH
T ss_pred ccCC
Confidence 9984
No 43
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.44 E-value=5.2e-07 Score=86.25 Aligned_cols=67 Identities=15% Similarity=0.202 Sum_probs=41.6
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCC--cCc-HHHHHHHHHhCcCCCeEEEEec
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSD--WSN-ATTRRVVMQIDPELKRTIIVST 209 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D--~~~-~~~l~lar~~Dp~g~RTIgVlT 209 (759)
.+.|+|+||... ...+...|+++.+.+|+++...+. +.+ ..++..+....+.+...+.|+|
T Consensus 61 ~~~~~Dt~G~~~----------------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~n 124 (180)
T 2g6b_A 61 KLQMWDTAGQER----------------FRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGN 124 (180)
T ss_dssp EEEEEECCCC------------------------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred EEEEEeCCCcHH----------------HHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEE
Confidence 578999999522 235667788888888877643221 111 2345556666667789999999
Q ss_pred CCCccc
Q 004351 210 KLDTKI 215 (759)
Q Consensus 210 K~D~~~ 215 (759)
|.|+..
T Consensus 125 K~Dl~~ 130 (180)
T 2g6b_A 125 KVDSAH 130 (180)
T ss_dssp CCSTTS
T ss_pred CcccCc
Confidence 999964
No 44
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=98.44 E-value=1.9e-07 Score=89.12 Aligned_cols=28 Identities=25% Similarity=0.381 Sum_probs=24.2
Q ss_pred CCCEEEEEeccCCchHHHHHHHhCCccc
Q 004351 23 DAPAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 23 ~lPqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
..+.|+|+|+.++|||||+++|+|-.++
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~~~ 35 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNTFS 35 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC--
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4679999999999999999999998775
No 45
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=98.44 E-value=9.6e-07 Score=85.83 Aligned_cols=67 Identities=15% Similarity=0.160 Sum_probs=43.4
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHH-HHHHHHhcCccceeEeecccCC--c-CcHHHHH-HHHHhCcCCCeEEEE
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVE-SLVRAKMQHREFIILCLEDCSD--W-SNATTRR-VVMQIDPELKRTIIV 207 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~-~lv~~Yi~~~~~IIL~V~~~~D--~-~~~~~l~-lar~~Dp~g~RTIgV 207 (759)
.+.|+|+||.. ... .+...|+++.+.+|+++...+. + ....++. +.+.....+...|.|
T Consensus 70 ~~~l~Dt~G~~----------------~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv 133 (189)
T 1z06_A 70 KIQLWDTAGQE----------------RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILV 133 (189)
T ss_dssp EEEEEECCCSH----------------HHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEE
T ss_pred EEEEEECCCch----------------hhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence 58899999952 123 5778889888888777643321 1 1122333 334444567889999
Q ss_pred ecCCCccc
Q 004351 208 STKLDTKI 215 (759)
Q Consensus 208 lTK~D~~~ 215 (759)
+||.|+..
T Consensus 134 ~nK~Dl~~ 141 (189)
T 1z06_A 134 GNKCDLRS 141 (189)
T ss_dssp EECTTCGG
T ss_pred EECccccc
Confidence 99999953
No 46
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.43 E-value=3.3e-07 Score=90.42 Aligned_cols=66 Identities=20% Similarity=0.217 Sum_probs=43.2
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCC--cCc-HHHHHHHHHhCcCCCeEEEEec
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSD--WSN-ATTRRVVMQIDPELKRTIIVST 209 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D--~~~-~~~l~lar~~Dp~g~RTIgVlT 209 (759)
.++|+||||.... ..+...|++..+.+|+++..... +.. ..++..+....+.+...|.|+|
T Consensus 70 ~~~l~Dt~G~~~~----------------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~n 133 (213)
T 3cph_A 70 KLQLWDTAGQERF----------------RTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGN 133 (213)
T ss_dssp EEEEECCTTGGGG----------------TCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEE
T ss_pred EEEEEeCCCcHHH----------------HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEE
Confidence 5899999996432 13456778888877776643221 111 2345555565566788999999
Q ss_pred CCCcc
Q 004351 210 KLDTK 214 (759)
Q Consensus 210 K~D~~ 214 (759)
|.|+.
T Consensus 134 K~Dl~ 138 (213)
T 3cph_A 134 KSDME 138 (213)
T ss_dssp CTTCS
T ss_pred CCCCc
Confidence 99983
No 47
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=98.43 E-value=8.6e-07 Score=83.35 Aligned_cols=67 Identities=21% Similarity=0.210 Sum_probs=42.0
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccC--CcCc-HHHHH-HHHHhCcCCCeEEEEe
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCS--DWSN-ATTRR-VVMQIDPELKRTIIVS 208 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~--D~~~-~~~l~-lar~~Dp~g~RTIgVl 208 (759)
.+.|+|+||..... .+...|+++.+.+|+++...+ .+.. ..++. +.+.....+...+.|+
T Consensus 52 ~~~l~D~~G~~~~~----------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~ 115 (167)
T 1c1y_A 52 MLEILDTAGTEQFT----------------AMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVG 115 (167)
T ss_dssp EEEEEEECSSCSST----------------THHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEE
T ss_pred EEEEEECCChHHHH----------------HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEE
Confidence 58899999964321 345667777887777664222 1111 12222 3344455678899999
Q ss_pred cCCCccc
Q 004351 209 TKLDTKI 215 (759)
Q Consensus 209 TK~D~~~ 215 (759)
||.|+..
T Consensus 116 nK~Dl~~ 122 (167)
T 1c1y_A 116 NKCDLED 122 (167)
T ss_dssp ECTTCGG
T ss_pred ECccccc
Confidence 9999964
No 48
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=98.43 E-value=4e-07 Score=85.91 Aligned_cols=67 Identities=21% Similarity=0.162 Sum_probs=43.9
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCC--cCc-HHHHHHHHHhCcCCCeEEEEec
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSD--WSN-ATTRRVVMQIDPELKRTIIVST 209 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D--~~~-~~~l~lar~~Dp~g~RTIgVlT 209 (759)
.+.|+|+||.... ..+...|+++.+.+|+++...+. +.+ ..++..++.........+.|.|
T Consensus 56 ~~~~~Dt~G~~~~----------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~n 119 (170)
T 1z0j_A 56 KFLIWDTAGLERF----------------RALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGN 119 (170)
T ss_dssp EEEEEEECCSGGG----------------GGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEE
T ss_pred EEEEEcCCCchhh----------------hcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEE
Confidence 5789999998321 14556788888887776643321 111 2234455555566778999999
Q ss_pred CCCccc
Q 004351 210 KLDTKI 215 (759)
Q Consensus 210 K~D~~~ 215 (759)
|.|+..
T Consensus 120 K~Dl~~ 125 (170)
T 1z0j_A 120 KCDLTD 125 (170)
T ss_dssp CTTCGG
T ss_pred CCcccc
Confidence 999964
No 49
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=98.43 E-value=4.7e-07 Score=94.41 Aligned_cols=28 Identities=29% Similarity=0.462 Sum_probs=25.6
Q ss_pred CCCEEEEEeccCCchHHHHHHHhCCccc
Q 004351 23 DAPAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 23 ~lPqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
..+.|+++|+.++|||||+|+|+|..+.
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~ 29 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQH 29 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcc
Confidence 4678999999999999999999998874
No 50
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.42 E-value=5.8e-07 Score=89.42 Aligned_cols=30 Identities=23% Similarity=0.400 Sum_probs=26.6
Q ss_pred CCCCCEEEEEeccCCchHHHHHHHhCCccc
Q 004351 21 PFDAPAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 21 ~i~lPqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.-..|.|+|+|+.++|||||+++|++..|+
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~ 38 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVR 38 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCC
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 346799999999999999999999998875
No 51
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=98.42 E-value=4.4e-07 Score=84.76 Aligned_cols=26 Identities=38% Similarity=0.406 Sum_probs=23.6
Q ss_pred CEEEEEeccCCchHHHHHHHhCCccc
Q 004351 25 PAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
..|+|+|+.++|||||+++|++..+.
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~ 29 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFV 29 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCc
Confidence 36999999999999999999988765
No 52
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=98.42 E-value=5.9e-07 Score=86.12 Aligned_cols=30 Identities=33% Similarity=0.354 Sum_probs=25.2
Q ss_pred CCCCCEEEEEeccCCchHHHHHHHhCCccc
Q 004351 21 PFDAPAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 21 ~i~lPqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
......|+|+|+.++|||||+++|++-.|+
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~ 44 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYDEFV 44 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHSCCC
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCC
Confidence 445568999999999999999999987765
No 53
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=98.41 E-value=3.2e-07 Score=90.63 Aligned_cols=34 Identities=18% Similarity=0.213 Sum_probs=26.1
Q ss_pred hcCCCCCCCEEEEEeccCCchHHHHHHHhCCccc
Q 004351 17 ELETPFDAPAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 17 ~~~~~i~lPqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.++-...-..|+++|+.++|||||+++|+|-.|+
T Consensus 18 ~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~ 51 (198)
T 1f6b_A 18 FLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLG 51 (198)
T ss_dssp HHTCTTCCEEEEEEEETTSSHHHHHHHHSCC---
T ss_pred HhhccCCCcEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 3444556679999999999999999999987654
No 54
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.41 E-value=3.5e-07 Score=102.78 Aligned_cols=77 Identities=18% Similarity=0.202 Sum_probs=47.3
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHH-HHHHhcCccceeEeecccCCcCcHHHHHHHHHhCcCCCeEEEEecCC
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESL-VRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKL 211 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~l-v~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~RTIgVlTK~ 211 (759)
.++|+||||+.....-... .+ ....+ ...|++..+.+|+++ ++.+........++..+...+...|.|+||+
T Consensus 244 ~~~l~DT~G~~~~~~~~~~--~e----~~~~~~~~~~~~~ad~~llvi-D~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~ 316 (456)
T 4dcu_A 244 EFVIVDTAGMRKKGKVYET--TE----KYSVLRALKAIDRSEVVAVVL-DGEEGIIEQDKRIAGYAHEAGKAVVIVVNKW 316 (456)
T ss_dssp EEEETTGGGTTTBTTBCCC--CS----HHHHHHHHHHHHHCSEEEEEE-ETTTCCCHHHHHHHHHHHHTTCEEEEEEECG
T ss_pred eEEEEECCCCCcCcccchH--HH----HHHHHHHHHHHhhCCEEEEEE-eCCCCcCHHHHHHHHHHHHcCCCEEEEEECh
Confidence 6899999999765421111 01 11122 235777777666654 4433334455666666655788999999999
Q ss_pred Ccccc
Q 004351 212 DTKIP 216 (759)
Q Consensus 212 D~~~~ 216 (759)
|+...
T Consensus 317 Dl~~~ 321 (456)
T 4dcu_A 317 DAVDK 321 (456)
T ss_dssp GGSCC
T ss_pred hcCCC
Confidence 99743
No 55
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.41 E-value=2.6e-07 Score=87.02 Aligned_cols=67 Identities=15% Similarity=0.068 Sum_probs=41.7
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcH---HHHHHHHHhCcCCCeEEEEec
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNA---TTRRVVMQIDPELKRTIIVST 209 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~---~~l~lar~~Dp~g~RTIgVlT 209 (759)
.+.|+|+||... ...+...|+++.+.+|+++...+...-. .++.......+.+...+.|+|
T Consensus 53 ~~~~~D~~G~~~----------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~n 116 (170)
T 1ek0_A 53 KFEIWDTAGQER----------------FASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGN 116 (170)
T ss_dssp EEEEEEECCSGG----------------GGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred EEEEEECCCChh----------------hhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEE
Confidence 588999999532 1245677888888877766433211111 123333333345678999999
Q ss_pred CCCccc
Q 004351 210 KLDTKI 215 (759)
Q Consensus 210 K~D~~~ 215 (759)
|.|+..
T Consensus 117 K~Dl~~ 122 (170)
T 1ek0_A 117 KIDXLQ 122 (170)
T ss_dssp CGGGGG
T ss_pred CCCccc
Confidence 999864
No 56
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.41 E-value=1.3e-06 Score=84.67 Aligned_cols=28 Identities=18% Similarity=0.300 Sum_probs=24.7
Q ss_pred CCCEEEEEeccCCchHHHHHHHhCCccc
Q 004351 23 DAPAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 23 ~lPqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.-..|+|+|+.++|||||+++|++-.+.
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~ 42 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVV 42 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 3578999999999999999999987664
No 57
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=98.41 E-value=1.6e-07 Score=89.66 Aligned_cols=28 Identities=18% Similarity=0.427 Sum_probs=25.0
Q ss_pred CCCEEEEEeccCCchHHHHHHHhCCccc
Q 004351 23 DAPAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 23 ~lPqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
....|+|+|+.++|||||+++|++-.|+
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~ 34 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKYS 34 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcCC
Confidence 3468999999999999999999988765
No 58
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=98.40 E-value=8.5e-07 Score=83.06 Aligned_cols=66 Identities=20% Similarity=0.178 Sum_probs=42.5
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCc----HHH-HHHHHHhCcCCCeEEEE
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSN----ATT-RRVVMQIDPELKRTIIV 207 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~----~~~-l~lar~~Dp~g~RTIgV 207 (759)
.+.|+|+||.... ..+...|+++.+.+|+++...+ ... ... ..+.+.....+...+.|
T Consensus 52 ~~~l~D~~G~~~~----------------~~~~~~~~~~~~~~i~v~d~~~-~~s~~~~~~~~~~i~~~~~~~~~piilv 114 (167)
T 1kao_A 52 VLEILDTAGTEQF----------------ASMRDLYIKNGQGFILVYSLVN-QQSFQDIKPMRDQIIRVKRYEKVPVILV 114 (167)
T ss_dssp EEEEEECCCTTCC----------------HHHHHHHHHHCSEEEEEEETTC-HHHHHHHHHHHHHHHHHTTTSCCCEEEE
T ss_pred EEEEEECCCchhh----------------HHHHHHHhccCCEEEEEEeCCC-HHHHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence 4889999995321 2456678888887777664322 111 111 23445555567889999
Q ss_pred ecCCCccc
Q 004351 208 STKLDTKI 215 (759)
Q Consensus 208 lTK~D~~~ 215 (759)
+||.|+..
T Consensus 115 ~nK~Dl~~ 122 (167)
T 1kao_A 115 GNKVDLES 122 (167)
T ss_dssp EECGGGGG
T ss_pred EECCcccc
Confidence 99999863
No 59
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=98.40 E-value=5.5e-07 Score=87.73 Aligned_cols=66 Identities=15% Similarity=0.086 Sum_probs=42.8
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCc----HHHHHHHHHhCcCCCeEEEEe
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSN----ATTRRVVMQIDPELKRTIIVS 208 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~----~~~l~lar~~Dp~g~RTIgVl 208 (759)
.++|+|+||..... .+...|+++.+.+|+++...+ ... ..++..+......+...|.|+
T Consensus 75 ~~~i~Dt~G~~~~~----------------~~~~~~~~~~d~vi~v~D~~~-~~s~~~~~~~l~~i~~~~~~~~piilv~ 137 (193)
T 2oil_A 75 KAQIWDTAGLERYR----------------AITSAYYRGAVGALLVFDLTK-HQTYAVVERWLKELYDHAEATIVVMLVG 137 (193)
T ss_dssp EEEEEEESCCCTTC----------------TTHHHHHTTCCEEEEEEETTC-HHHHHTHHHHHHHHHTTSCTTCEEEEEE
T ss_pred EEEEEeCCCchhhh----------------hhhHHHhccCCEEEEEEECCC-HHHHHHHHHHHHHHHHhcCCCCeEEEEE
Confidence 47899999984421 345678888887777654322 111 223444444445577899999
Q ss_pred cCCCccc
Q 004351 209 TKLDTKI 215 (759)
Q Consensus 209 TK~D~~~ 215 (759)
||.|+..
T Consensus 138 nK~Dl~~ 144 (193)
T 2oil_A 138 NKSDLSQ 144 (193)
T ss_dssp ECGGGGG
T ss_pred ECCCccc
Confidence 9999964
No 60
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=98.40 E-value=8.6e-07 Score=87.03 Aligned_cols=66 Identities=18% Similarity=0.136 Sum_probs=44.3
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCc----HHHHHHHHHhCcCCCeEEEEe
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSN----ATTRRVVMQIDPELKRTIIVS 208 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~----~~~l~lar~~Dp~g~RTIgVl 208 (759)
.+.|+|+||... ...+...|+++.+.+|+++...+ ... ..++..+....+.+...|.|+
T Consensus 58 ~~~l~Dt~G~~~----------------~~~~~~~~~~~~d~ii~v~d~~~-~~s~~~~~~~~~~i~~~~~~~~piilv~ 120 (203)
T 1zbd_A 58 KLQIWDTAGLER----------------YRTITTAYYRGAMGFILMYDITN-EESFNAVQDWSTQIKTYSWDNAQVLLVG 120 (203)
T ss_dssp EEEEEEECCSGG----------------GHHHHHTTGGGCSEEEEEEETTC-HHHHHHHHHHHHHHHHHSCSSCEEEEEE
T ss_pred EEEEEECCCchh----------------hcchHHHhhcCCCEEEEEEECcC-HHHHHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 578999999732 12567888988887777664322 111 123444555555678899999
Q ss_pred cCCCccc
Q 004351 209 TKLDTKI 215 (759)
Q Consensus 209 TK~D~~~ 215 (759)
||.|+..
T Consensus 121 nK~Dl~~ 127 (203)
T 1zbd_A 121 NKCDMED 127 (203)
T ss_dssp ECTTCTT
T ss_pred ECcccCc
Confidence 9999864
No 61
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=98.40 E-value=3.5e-07 Score=86.45 Aligned_cols=26 Identities=31% Similarity=0.400 Sum_probs=24.0
Q ss_pred CEEEEEeccCCchHHHHHHHhCCccc
Q 004351 25 PAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
..|+|+|+.++|||||+++|++-.++
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~~~ 32 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCENKFN 32 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCCCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCC
Confidence 58999999999999999999988775
No 62
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=98.40 E-value=5.4e-07 Score=85.01 Aligned_cols=27 Identities=33% Similarity=0.373 Sum_probs=22.5
Q ss_pred CCEEEEEeccCCchHHHHHHHhCCccc
Q 004351 24 APAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 24 lPqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
..+|+++|+.++|||||+++|+|..+.
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~ 28 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDG 28 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC---
T ss_pred eEEEEEECCCCCCHHHHHHHHcCcccc
Confidence 568999999999999999999987764
No 63
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=98.40 E-value=8.3e-07 Score=86.89 Aligned_cols=30 Identities=33% Similarity=0.354 Sum_probs=26.3
Q ss_pred CCCCCEEEEEeccCCchHHHHHHHhCCccc
Q 004351 21 PFDAPAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 21 ~i~lPqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
....+.|+|+|+.++|||||+++|++-.|.
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~ 40 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFV 40 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCC
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCC
Confidence 455679999999999999999999988764
No 64
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=98.40 E-value=3.2e-07 Score=86.44 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=23.6
Q ss_pred CEEEEEeccCCchHHHHHHHhCCccc
Q 004351 25 PAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
..|+|+|+.++|||||+++|++-.++
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~~~~ 31 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKGIFT 31 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCC
T ss_pred EEEEEECcCCCCHHHHHHHHHcCCCC
Confidence 57999999999999999999987765
No 65
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=98.38 E-value=1.2e-06 Score=82.31 Aligned_cols=68 Identities=16% Similarity=0.158 Sum_probs=42.5
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHHHHH----hCcCCCeEEEE
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQ----IDPELKRTIIV 207 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~----~Dp~g~RTIgV 207 (759)
..+.|+||||... .+.+...|+++.+.+|+++...+...-......... ....+...+.|
T Consensus 44 ~~~~i~Dt~G~~~----------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv 107 (164)
T 1r8s_A 44 ISFTVWDVGGQDK----------------IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVF 107 (164)
T ss_dssp CEEEEEECCCCGG----------------GHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEE
T ss_pred EEEEEEEcCCChh----------------hHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEE
Confidence 4689999999732 235677899998888876643321111112222222 23346789999
Q ss_pred ecCCCccc
Q 004351 208 STKLDTKI 215 (759)
Q Consensus 208 lTK~D~~~ 215 (759)
+||.|+..
T Consensus 108 ~nK~Dl~~ 115 (164)
T 1r8s_A 108 ANKQDLPN 115 (164)
T ss_dssp EECTTSTT
T ss_pred EECcCCcC
Confidence 99999953
No 66
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=98.38 E-value=4.5e-07 Score=88.34 Aligned_cols=30 Identities=17% Similarity=0.262 Sum_probs=24.3
Q ss_pred CCCCCEEEEEeccCCchHHHHHHHhCCccc
Q 004351 21 PFDAPAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 21 ~i~lPqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.-..+.|+|+|+.++|||||+++|++-.|.
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~ 43 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSS 43 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSCCC--
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcCCCc
Confidence 345678999999999999999999998876
No 67
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=98.38 E-value=1.2e-06 Score=83.64 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=23.7
Q ss_pred CEEEEEeccCCchHHHHHHHhCCccc
Q 004351 25 PAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
+.|+++|+.++|||||+++|+|..++
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~~ 29 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENVY 29 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSSS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCee
Confidence 57999999999999999999998764
No 68
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=98.37 E-value=3.6e-07 Score=87.18 Aligned_cols=27 Identities=26% Similarity=0.415 Sum_probs=24.3
Q ss_pred CCEEEEEeccCCchHHHHHHHhCCccc
Q 004351 24 APAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 24 lPqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.+.|+|+|+.++|||||+++|++-.|.
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~~~~ 33 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTNKFD 33 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 468999999999999999999987765
No 69
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=98.37 E-value=1.4e-06 Score=82.64 Aligned_cols=27 Identities=26% Similarity=0.321 Sum_probs=22.5
Q ss_pred CCEEEEEeccCCchHHHHHHHhCCccc
Q 004351 24 APAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 24 lPqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.+.|+|+|+.++|||||+++|+|..++
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~~~ 30 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQER 30 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC---
T ss_pred EEEEEEECCCCccHHHHHHHHhcCCCc
Confidence 468999999999999999999998775
No 70
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=98.37 E-value=8.8e-07 Score=84.73 Aligned_cols=66 Identities=14% Similarity=0.041 Sum_probs=41.8
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCc----HHHHHHHHHhCcCCCeEEEEe
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSN----ATTRRVVMQIDPELKRTIIVS 208 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~----~~~l~lar~~Dp~g~RTIgVl 208 (759)
.+.|+|+||... ...+...|++..+.+|+++... +... ..++..+......+...+.|+
T Consensus 62 ~~~i~Dt~G~~~----------------~~~~~~~~~~~~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~~~~~~p~i~v~ 124 (181)
T 2efe_B 62 KFEIWDTAGQER----------------YHSLAPMYYRGAAAAIIVFDVT-NQASFERAKKWVQELQAQGNPNMVMALAG 124 (181)
T ss_dssp EEEEEECCCSGG----------------GGGGTHHHHTTCSEEEEEEETT-CHHHHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred EEEEEeCCCChh----------------hhhhhHHHhccCCEEEEEEECC-CHHHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 588999999532 1245567888888777766432 2211 123333444444467899999
Q ss_pred cCCCccc
Q 004351 209 TKLDTKI 215 (759)
Q Consensus 209 TK~D~~~ 215 (759)
||.|+..
T Consensus 125 nK~Dl~~ 131 (181)
T 2efe_B 125 NKSDLLD 131 (181)
T ss_dssp ECTTCTT
T ss_pred ECCcccc
Confidence 9999964
No 71
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=98.37 E-value=1.8e-06 Score=83.06 Aligned_cols=67 Identities=19% Similarity=0.117 Sum_probs=43.0
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCc---HHHHHHHHHhCc-CCCeEEEEe
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSN---ATTRRVVMQIDP-ELKRTIIVS 208 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~---~~~l~lar~~Dp-~g~RTIgVl 208 (759)
.+.|+||||... ...+...|+++.+.+|+++...+...- ..++..+..... .+...|.|+
T Consensus 71 ~~~l~Dt~G~~~----------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~ 134 (195)
T 3bc1_A 71 HLQLWDTAGLER----------------FRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCG 134 (195)
T ss_dssp EEEEEEECCSGG----------------GHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEE
T ss_pred EEEEEeCCCcHH----------------HHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 588999999732 235678899998888877643221111 122333333322 567899999
Q ss_pred cCCCccc
Q 004351 209 TKLDTKI 215 (759)
Q Consensus 209 TK~D~~~ 215 (759)
||.|+..
T Consensus 135 nK~Dl~~ 141 (195)
T 3bc1_A 135 NKSDLED 141 (195)
T ss_dssp ECTTCGG
T ss_pred ECccccc
Confidence 9999864
No 72
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=98.35 E-value=5e-07 Score=89.89 Aligned_cols=68 Identities=18% Similarity=0.096 Sum_probs=42.8
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCC---cCcHHHHHHHHHhCcCCCeEEEEec
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSD---WSNATTRRVVMQIDPELKRTIIVST 209 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D---~~~~~~l~lar~~Dp~g~RTIgVlT 209 (759)
.+.|+||||..... .+...|+.+.+.+|+++...+. -....++..++...+.+...|.|+|
T Consensus 62 ~~~l~Dt~G~~~~~----------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~n 125 (218)
T 4djt_A 62 KFNVWDTAGQEKKA----------------VLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCAN 125 (218)
T ss_dssp EEEEEEECSGGGTS----------------CCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEE
T ss_pred EEEEEecCCchhhc----------------hHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEE
Confidence 47899999975421 2334567778877776643221 1112344556666566788999999
Q ss_pred CCCcccc
Q 004351 210 KLDTKIP 216 (759)
Q Consensus 210 K~D~~~~ 216 (759)
|.|+...
T Consensus 126 K~Dl~~~ 132 (218)
T 4djt_A 126 KIDIKNR 132 (218)
T ss_dssp CTTCC--
T ss_pred CCCCccc
Confidence 9998643
No 73
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.34 E-value=8.3e-07 Score=83.72 Aligned_cols=26 Identities=35% Similarity=0.315 Sum_probs=23.6
Q ss_pred CEEEEEeccCCchHHHHHHHhCCccc
Q 004351 25 PAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
..|+|+|+.++|||||+++|+|-.++
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~ 29 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKGTFR 29 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTCCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 47999999999999999999997765
No 74
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=98.34 E-value=1.2e-06 Score=85.05 Aligned_cols=67 Identities=16% Similarity=0.124 Sum_probs=42.9
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCC--cC-cHHHHHHHHHhCcCCCeEEEEec
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSD--WS-NATTRRVVMQIDPELKRTIIVST 209 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D--~~-~~~~l~lar~~Dp~g~RTIgVlT 209 (759)
.+.|+|+||..... .+...|+++.+.+|+++...+. +. ...++..++...+.+...|.|+|
T Consensus 72 ~~~l~Dt~G~~~~~----------------~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~n 135 (189)
T 2gf9_A 72 KLQIWDTAGQERYR----------------TITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGN 135 (189)
T ss_dssp EEEEEECCSCCSSC----------------CSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred EEEEEeCCCcHHHh----------------hhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEE
Confidence 57899999964321 2345678888877776643221 11 12234455555556789999999
Q ss_pred CCCccc
Q 004351 210 KLDTKI 215 (759)
Q Consensus 210 K~D~~~ 215 (759)
|.|+..
T Consensus 136 K~Dl~~ 141 (189)
T 2gf9_A 136 KCDLED 141 (189)
T ss_dssp CTTCGG
T ss_pred Cccccc
Confidence 999964
No 75
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=98.34 E-value=7.1e-07 Score=85.86 Aligned_cols=66 Identities=20% Similarity=0.163 Sum_probs=40.2
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCC--cC-cHHHHH-HHHHhCcCCCeEEEEe
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSD--WS-NATTRR-VVMQIDPELKRTIIVS 208 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D--~~-~~~~l~-lar~~Dp~g~RTIgVl 208 (759)
.+.|+|+||.... ..+...|+...+.+|+++...+. +. ...++. +.+.....+...|.|+
T Consensus 53 ~~~i~Dt~G~~~~----------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~ 116 (189)
T 4dsu_A 53 LLDILDTAGQEEY----------------SAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVG 116 (189)
T ss_dssp EEEEEECCCC-------------------CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEE
T ss_pred EEEEEECCCcHHH----------------HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEE
Confidence 4778999995331 24556788888877776643221 11 111222 3333455678899999
Q ss_pred cCCCcc
Q 004351 209 TKLDTK 214 (759)
Q Consensus 209 TK~D~~ 214 (759)
||.|+.
T Consensus 117 nK~Dl~ 122 (189)
T 4dsu_A 117 NKCDLP 122 (189)
T ss_dssp ECTTSS
T ss_pred ECccCc
Confidence 999986
No 76
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=98.33 E-value=1.6e-06 Score=84.50 Aligned_cols=67 Identities=10% Similarity=0.111 Sum_probs=42.2
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCc-HHHHH----HHHHhCcCCCeEEE
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSN-ATTRR----VVMQIDPELKRTII 206 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~-~~~l~----lar~~Dp~g~RTIg 206 (759)
..+.|+|+||.. ....+...|+++.+.+|+++... +... ..... +.+.....+...|.
T Consensus 67 ~~~~l~Dt~G~~----------------~~~~~~~~~~~~~d~ii~v~D~~-~~~s~~~~~~~~~~~~~~~~~~~~piil 129 (188)
T 1zd9_A 67 VTIKLWDIGGQP----------------RFRSMWERYCRGVSAIVYMVDAA-DQEKIEASKNELHNLLDKPQLQGIPVLV 129 (188)
T ss_dssp EEEEEEEECCSH----------------HHHTTHHHHHTTCSEEEEEEETT-CGGGHHHHHHHHHHHHTCGGGTTCCEEE
T ss_pred EEEEEEECCCCH----------------hHHHHHHHHHccCCEEEEEEECC-CHHHHHHHHHHHHHHHhCcccCCCCEEE
Confidence 357899999962 23356778888888877766432 2222 12222 22222235678999
Q ss_pred EecCCCccc
Q 004351 207 VSTKLDTKI 215 (759)
Q Consensus 207 VlTK~D~~~ 215 (759)
|+||.|+..
T Consensus 130 v~NK~Dl~~ 138 (188)
T 1zd9_A 130 LGNKRDLPG 138 (188)
T ss_dssp EEECTTSTT
T ss_pred EEECCCCcc
Confidence 999999963
No 77
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.33 E-value=5.1e-07 Score=96.08 Aligned_cols=123 Identities=20% Similarity=0.291 Sum_probs=71.6
Q ss_pred CCCCEEEEEeccCCchHHHHHHHhCCccceecCcc-ccccceEEEEeeCCCCCCCceEEecCCCCCCcccccChHHHHHH
Q 004351 22 FDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGT-KTRRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEIQSF 100 (759)
Q Consensus 22 i~lPqIVVVG~QSsGKSSLLEAL~G~~fp~~g~g~-cTR~P~~l~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~l~~~ 100 (759)
+.-+.|++||..++|||||+|+|+|..+..++... .||..+
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~-------------------------------------- 47 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRI-------------------------------------- 47 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCE--------------------------------------
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeE--------------------------------------
Confidence 44567999999999999999999998765321100 011000
Q ss_pred HHHHHhhhhhccCCCccccceEEEEEEecCCCCcEEEeCCCCc-CCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEee
Q 004351 101 IEAENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLI-APAPGRKNRALQDQARAVESLVRAKMQHREFIILCL 179 (759)
Q Consensus 101 Ie~~~~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~-~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V 179 (759)
.+ -+.. ....++|+||||+. .. . ..........+..+++..+.+++++
T Consensus 48 --------------~g--------i~~~-~~~~i~~iDTpG~~~~~------~--~~l~~~~~~~~~~~l~~~D~vl~Vv 96 (301)
T 1ega_A 48 --------------VG--------IHTE-GAYQAIYVDTPGLHMEE------K--RAINRLMNKAASSSIGDVELVIFVV 96 (301)
T ss_dssp --------------EE--------EEEE-TTEEEEEESSSSCCHHH------H--HHHHHHHTCCTTSCCCCEEEEEEEE
T ss_pred --------------EE--------EEEE-CCeeEEEEECcCCCccc------h--hhHHHHHHHHHHHHHhcCCEEEEEE
Confidence 00 0111 12368899999995 21 0 0001112223455666666555444
Q ss_pred cccCCcCcHHHHHHHHHhCcCCCeEEEEecCCCccc
Q 004351 180 EDCSDWSNATTRRVVMQIDPELKRTIIVSTKLDTKI 215 (759)
Q Consensus 180 ~~~~D~~~~~~l~lar~~Dp~g~RTIgVlTK~D~~~ 215 (759)
+++++. .....+++.+...+...|.|+||.|+..
T Consensus 97 -d~~~~~-~~~~~i~~~l~~~~~P~ilvlNK~D~~~ 130 (301)
T 1ega_A 97 -EGTRWT-PDDEMVLNKLREGKAPVILAVNKVDNVQ 130 (301)
T ss_dssp -ETTCCC-HHHHHHHHHHHSSSSCEEEEEESTTTCC
T ss_pred -eCCCCC-HHHHHHHHHHHhcCCCEEEEEECcccCc
Confidence 444443 3345566666556788999999999863
No 78
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=98.33 E-value=1.1e-06 Score=85.92 Aligned_cols=66 Identities=17% Similarity=0.083 Sum_probs=43.8
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCc----HHHHHHHHHhCcCCCeEEEEe
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSN----ATTRRVVMQIDPELKRTIIVS 208 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~----~~~l~lar~~Dp~g~RTIgVl 208 (759)
.+.|+|+||.... ..+...|+++.+.+|+++...+ ... ..++..++...+.+...+.|+
T Consensus 73 ~~~i~Dt~G~~~~----------------~~~~~~~~~~~d~iilV~d~~~-~~s~~~~~~~~~~i~~~~~~~~piiiv~ 135 (192)
T 2fg5_A 73 KFLIWDTAGQERF----------------HSLAPMYYRGSAAAVIVYDITK-QDSFYTLKKWVKELKEHGPENIVMAIAG 135 (192)
T ss_dssp EEEEEEECCSGGG----------------GGGTHHHHTTCSEEEEEEETTC-THHHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred EEEEEcCCCchhh----------------HhhhHHhhccCCEEEEEEeCCC-HHHHHHHHHHHHHHHHhCCCCCcEEEEE
Confidence 5789999995321 1455678888887777664322 211 223445566666678999999
Q ss_pred cCCCccc
Q 004351 209 TKLDTKI 215 (759)
Q Consensus 209 TK~D~~~ 215 (759)
||.|+..
T Consensus 136 NK~Dl~~ 142 (192)
T 2fg5_A 136 NKCDLSD 142 (192)
T ss_dssp ECGGGGG
T ss_pred ECccccc
Confidence 9999963
No 79
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=98.32 E-value=6.9e-07 Score=87.84 Aligned_cols=66 Identities=15% Similarity=0.211 Sum_probs=42.1
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCC--cC-cHHHHHHHHHhCcCCCeEEEEec
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSD--WS-NATTRRVVMQIDPELKRTIIVST 209 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D--~~-~~~~l~lar~~Dp~g~RTIgVlT 209 (759)
.++|+|+||... ...+...|++..+.+|+++...+. +. ...++..++.....+...|.|+|
T Consensus 78 ~l~i~Dt~G~~~----------------~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~N 141 (199)
T 2p5s_A 78 VLQLWDTAGQER----------------FRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGN 141 (199)
T ss_dssp EEEEEECTTCTT----------------CHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEE
T ss_pred EEEEEECCCCcc----------------hhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEE
Confidence 588999999532 125667888888888877643221 11 12245555666556778999999
Q ss_pred CCCcc
Q 004351 210 KLDTK 214 (759)
Q Consensus 210 K~D~~ 214 (759)
|.|+.
T Consensus 142 K~Dl~ 146 (199)
T 2p5s_A 142 KADIR 146 (199)
T ss_dssp CGGGH
T ss_pred Ccccc
Confidence 99985
No 80
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=98.32 E-value=7.6e-07 Score=87.86 Aligned_cols=67 Identities=19% Similarity=0.126 Sum_probs=43.0
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCC--cC-cHHHHHHHHHhCcCCCeEEEEec
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSD--WS-NATTRRVVMQIDPELKRTIIVST 209 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D--~~-~~~~l~lar~~Dp~g~RTIgVlT 209 (759)
.+.|+|+||... ...+...|+++.+.+|+++...+. +. ...++..++.....+...|.|+|
T Consensus 75 ~l~l~Dt~G~~~----------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~n 138 (200)
T 2o52_A 75 KLQIWDTAGQER----------------FRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGN 138 (200)
T ss_dssp EEEEECCTTHHH----------------HSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEE
T ss_pred EEEEEcCCCcHh----------------HHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEE
Confidence 688999999522 224556788888888877643221 11 12234444554556788999999
Q ss_pred CCCccc
Q 004351 210 KLDTKI 215 (759)
Q Consensus 210 K~D~~~ 215 (759)
|.|+..
T Consensus 139 K~Dl~~ 144 (200)
T 2o52_A 139 KKDLDP 144 (200)
T ss_dssp CGGGGG
T ss_pred CCCccc
Confidence 999853
No 81
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=98.31 E-value=1.1e-06 Score=84.97 Aligned_cols=28 Identities=18% Similarity=0.293 Sum_probs=24.0
Q ss_pred CCCCEEEEEeccCCchHHHHHHHhCCcc
Q 004351 22 FDAPAVLVVGHQTDGKSALVEALMGFQF 49 (759)
Q Consensus 22 i~lPqIVVVG~QSsGKSSLLEAL~G~~f 49 (759)
.....|+|+|+.++|||||+++|++-.|
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~ 46 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMNEV 46 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTTSC
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3456899999999999999999999876
No 82
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=98.31 E-value=1.1e-06 Score=86.63 Aligned_cols=66 Identities=17% Similarity=0.113 Sum_probs=42.0
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCc----HHHHHHHHHhCcCCCeEEEEe
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSN----ATTRRVVMQIDPELKRTIIVS 208 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~----~~~l~lar~~Dp~g~RTIgVl 208 (759)
.+.|+||||..... .+...|+++.+.+|+++...+ ..+ ..++..++...+.+...|.|+
T Consensus 58 ~~~l~Dt~G~~~~~----------------~~~~~~~~~~d~vilv~d~~~-~~s~~~~~~~~~~i~~~~~~~~piilv~ 120 (206)
T 2bcg_Y 58 KLQIWDTAGQERFR----------------TITSSYYRGSHGIIIVYDVTD-QESFNGVKMWLQEIDRYATSTVLKLLVG 120 (206)
T ss_dssp EEEEECCTTTTTTT----------------CCCGGGGTTCSEEEEEEETTC-HHHHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred EEEEEeCCChHHHH----------------HHHHHhccCCCEEEEEEECcC-HHHHHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 58899999964321 234567878887777664322 111 123444455555578899999
Q ss_pred cCCCccc
Q 004351 209 TKLDTKI 215 (759)
Q Consensus 209 TK~D~~~ 215 (759)
||.|+..
T Consensus 121 nK~Dl~~ 127 (206)
T 2bcg_Y 121 NKCDLKD 127 (206)
T ss_dssp ECTTCTT
T ss_pred ECCCCcc
Confidence 9999964
No 83
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=98.31 E-value=1.4e-06 Score=84.89 Aligned_cols=67 Identities=16% Similarity=0.136 Sum_probs=43.0
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCC--cCc-HHHHHHHHHhCcCCCeEEEEec
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSD--WSN-ATTRRVVMQIDPELKRTIIVST 209 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D--~~~-~~~l~lar~~Dp~g~RTIgVlT 209 (759)
.+.|+|+||.... ..+...|+++.+.+|+++...+. +.. ..++..++...+.+...|.|+|
T Consensus 71 ~~~i~Dt~G~~~~----------------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~n 134 (191)
T 2a5j_A 71 KLQIWDTAGQESF----------------RSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGN 134 (191)
T ss_dssp EEEEECCTTGGGT----------------SCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred EEEEEECCCchhh----------------hhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEE
Confidence 5789999996432 13455688888888776643221 111 2234445555556788999999
Q ss_pred CCCccc
Q 004351 210 KLDTKI 215 (759)
Q Consensus 210 K~D~~~ 215 (759)
|.|+..
T Consensus 135 K~Dl~~ 140 (191)
T 2a5j_A 135 KSDLES 140 (191)
T ss_dssp CTTCGG
T ss_pred CcccCC
Confidence 999953
No 84
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=98.31 E-value=1.2e-06 Score=91.95 Aligned_cols=70 Identities=17% Similarity=0.211 Sum_probs=42.8
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcC--ccceeEeecccCCcCcHHHHHHHHHhCcCCCeEEEEec
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQH--REFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVST 209 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~--~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~RTIgVlT 209 (759)
..+.|+||||...-.... .-+.+...|+.. ++.+| .|.++++.. ..+.+..++...+...|.|+|
T Consensus 49 ~~l~l~DtpG~~~~~~~~----------~~e~v~~~~~~~~~~d~vi-~V~D~t~~e--~~~~~~~~l~~~~~p~ilv~N 115 (272)
T 3b1v_A 49 KDLEIQDLPGIYSMSPYS----------PEAKVARDYLLSQRADSIL-NVVDATNLE--RNLYLTTQLIETGIPVTIALN 115 (272)
T ss_dssp TTEEEEECCCCSCSSCSS----------HHHHHHHHHHHTTCCSEEE-EEEEGGGHH--HHHHHHHHHHHTCSCEEEEEE
T ss_pred CeEEEEECCCcCccCCCC----------hHHHHHHHHHhcCCCCEEE-EEecCCchH--hHHHHHHHHHhcCCCEEEEEE
Confidence 478999999987542211 123567778763 55454 444443322 223344444335788999999
Q ss_pred CCCcc
Q 004351 210 KLDTK 214 (759)
Q Consensus 210 K~D~~ 214 (759)
|.|+.
T Consensus 116 K~Dl~ 120 (272)
T 3b1v_A 116 MIDVL 120 (272)
T ss_dssp CHHHH
T ss_pred ChhhC
Confidence 99985
No 85
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=98.31 E-value=7.1e-07 Score=84.44 Aligned_cols=68 Identities=12% Similarity=0.209 Sum_probs=41.5
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHH----HHHHhCcCCCeEEEE
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRR----VVMQIDPELKRTIIV 207 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~----lar~~Dp~g~RTIgV 207 (759)
..+.|+||||.... ..+...|+++.+.+|+++...+...-..... +.+.....+...+.|
T Consensus 51 ~~~~~~Dt~G~~~~----------------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv 114 (171)
T 1upt_A 51 LKFQVWDLGGLTSI----------------RPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVF 114 (171)
T ss_dssp EEEEEEEECCCGGG----------------GGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEE
T ss_pred EEEEEEECCCChhh----------------hHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEE
Confidence 45889999997431 1345678888887777664332111112222 222222357889999
Q ss_pred ecCCCccc
Q 004351 208 STKLDTKI 215 (759)
Q Consensus 208 lTK~D~~~ 215 (759)
+||.|+..
T Consensus 115 ~nK~Dl~~ 122 (171)
T 1upt_A 115 ANKQDMEQ 122 (171)
T ss_dssp EECTTSTT
T ss_pred EECCCCcC
Confidence 99999963
No 86
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.31 E-value=1e-06 Score=85.93 Aligned_cols=67 Identities=18% Similarity=0.147 Sum_probs=46.2
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccC--Cc-CcHHHHHHHHHhCcCCCeEEEEec
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCS--DW-SNATTRRVVMQIDPELKRTIIVST 209 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~--D~-~~~~~l~lar~~Dp~g~RTIgVlT 209 (759)
.+.|+|+||.. ....+...|+++.+.+|+++...+ .+ ....++..++...+.+...|.|+|
T Consensus 73 ~~~i~Dt~G~~----------------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~n 136 (191)
T 3dz8_A 73 KLQIWDTAGQE----------------RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGN 136 (191)
T ss_dssp EEEEECHHHHH----------------HCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred EEEEEeCCChH----------------HHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEE
Confidence 58899999941 234678889999888887764322 11 112345566666667889999999
Q ss_pred CCCccc
Q 004351 210 KLDTKI 215 (759)
Q Consensus 210 K~D~~~ 215 (759)
|.|+..
T Consensus 137 K~Dl~~ 142 (191)
T 3dz8_A 137 KCDMEE 142 (191)
T ss_dssp CTTCGG
T ss_pred CCCCcc
Confidence 999853
No 87
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=98.31 E-value=9.3e-07 Score=85.71 Aligned_cols=67 Identities=19% Similarity=0.180 Sum_probs=36.1
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCc---HHHHHHHHHh-CcCCCeEEEEe
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSN---ATTRRVVMQI-DPELKRTIIVS 208 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~---~~~l~lar~~-Dp~g~RTIgVl 208 (759)
.+.|+|+||... ...+...|++..+.+|+++...+...- ..++..+... ...+...+.|+
T Consensus 70 ~~~l~Dt~G~~~----------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~ 133 (190)
T 3con_A 70 LLDILDTAGQEE----------------YSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVG 133 (190)
T ss_dssp EEEEEECCC---------------------------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEE
T ss_pred EEEEEECCChHH----------------HHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEE
Confidence 578999999532 225667888888888766643221111 1223333333 33568899999
Q ss_pred cCCCccc
Q 004351 209 TKLDTKI 215 (759)
Q Consensus 209 TK~D~~~ 215 (759)
||.|+..
T Consensus 134 nK~Dl~~ 140 (190)
T 3con_A 134 NKCDLPT 140 (190)
T ss_dssp ECTTCSC
T ss_pred ECCcCCc
Confidence 9999864
No 88
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=98.31 E-value=6.7e-07 Score=85.32 Aligned_cols=27 Identities=22% Similarity=0.432 Sum_probs=24.2
Q ss_pred CCEEEEEeccCCchHHHHHHHhCCccc
Q 004351 24 APAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 24 lPqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
...|+|+|+.++|||||+++|++-.|+
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~~~~ 32 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQETFG 32 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGGGTT
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCcCC
Confidence 458999999999999999999987765
No 89
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.30 E-value=2.3e-06 Score=82.12 Aligned_cols=27 Identities=19% Similarity=0.274 Sum_probs=24.2
Q ss_pred CCCEEEEEeccCCchHHHHHHHhCCcc
Q 004351 23 DAPAVLVVGHQTDGKSALVEALMGFQF 49 (759)
Q Consensus 23 ~lPqIVVVG~QSsGKSSLLEAL~G~~f 49 (759)
.-..|+|+|+.++|||||+++|++-.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~ 43 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEV 43 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCc
Confidence 356899999999999999999997666
No 90
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.30 E-value=1.2e-06 Score=87.04 Aligned_cols=66 Identities=21% Similarity=0.210 Sum_probs=45.2
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCc----HHHHHHHHHhCcCCCeEEEEe
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSN----ATTRRVVMQIDPELKRTIIVS 208 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~----~~~l~lar~~Dp~g~RTIgVl 208 (759)
.+.|+||||... ...+...|+++.+.+|+++...+ ..+ ..++..++...+.+...|.|+
T Consensus 76 ~l~l~Dt~G~~~----------------~~~~~~~~~~~~d~~i~v~D~~~-~~s~~~~~~~~~~i~~~~~~~~piilv~ 138 (201)
T 2ew1_A 76 KLQIWDTAGQER----------------FRSITQSYYRSANALILTYDITC-EESFRCLPEWLREIEQYASNKVITVLVG 138 (201)
T ss_dssp EEEEEEECCSGG----------------GHHHHGGGSTTCSEEEEEEETTC-HHHHHTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred EEEEEECCCcHH----------------HHHHHHHHHhcCCEEEEEEECCC-HHHHHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 478999999521 23567889988888877764322 111 234555666666678899999
Q ss_pred cCCCccc
Q 004351 209 TKLDTKI 215 (759)
Q Consensus 209 TK~D~~~ 215 (759)
||.|+..
T Consensus 139 NK~Dl~~ 145 (201)
T 2ew1_A 139 NKIDLAE 145 (201)
T ss_dssp ECGGGGG
T ss_pred ECCCCcc
Confidence 9999963
No 91
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=98.30 E-value=2.2e-06 Score=82.82 Aligned_cols=30 Identities=23% Similarity=0.393 Sum_probs=26.0
Q ss_pred CCCCCEEEEEeccCCchHHHHHHHhCCccc
Q 004351 21 PFDAPAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 21 ~i~lPqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
+..-+.|+++|+.++|||||+++|+|..+.
T Consensus 4 ~~~~~~i~lvG~~gvGKStL~~~l~~~~~~ 33 (188)
T 2wjg_A 4 HMKSYEIALIGNPNVGKSTIFNALTGENVY 33 (188)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHTTCEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCcc
Confidence 445578999999999999999999997754
No 92
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=98.29 E-value=1.7e-06 Score=81.82 Aligned_cols=27 Identities=33% Similarity=0.418 Sum_probs=22.3
Q ss_pred CCEEEEEeccCCchHHHHHHHhCCccc
Q 004351 24 APAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 24 lPqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
+.+|+|+|+.++|||||+++|+|..+.
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~ 28 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGD 28 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC---
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCc
Confidence 458999999999999999999987765
No 93
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=98.29 E-value=8.5e-07 Score=87.34 Aligned_cols=28 Identities=21% Similarity=0.390 Sum_probs=25.1
Q ss_pred CCCEEEEEeccCCchHHHHHHHhCCccc
Q 004351 23 DAPAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 23 ~lPqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
..+.|+|+|+.++|||||+++|++-.|.
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~~~ 50 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGEFS 50 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCCC
Confidence 4567999999999999999999998775
No 94
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=98.28 E-value=6.1e-07 Score=101.67 Aligned_cols=72 Identities=19% Similarity=0.213 Sum_probs=36.4
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcH----HHHHHHHHhCcCCCeEEEEe
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNA----TTRRVVMQIDPELKRTIIVS 208 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~----~~l~lar~~Dp~g~RTIgVl 208 (759)
.++|+||||+...... ++ ..--.....|+...+.+++++..+. .... ....+.+.+. +...|.|+
T Consensus 282 ~l~liDT~G~~~~~~~-----ve---~~gi~~~~~~~~~aD~vl~VvD~s~-~~s~~~~~~~~~~l~~l~--~~piIvV~ 350 (476)
T 3gee_A 282 MFRLTDTAGLREAGEE-----IE---HEGIRRSRMKMAEADLILYLLDLGT-ERLDDELTEIRELKAAHP--AAKFLTVA 350 (476)
T ss_dssp EEEEEC----------------------------CCCSSCSEEEEEEETTT-CSSGGGHHHHHHHHHHCT--TSEEEEEE
T ss_pred EEEEEECCCCCcchhH-----HH---HHHHHHHHhhcccCCEEEEEEECCC-CcchhhhHHHHHHHHhcC--CCCEEEEE
Confidence 5899999999652100 00 0001234567878776666554332 2222 4566667765 67899999
Q ss_pred cCCCccc
Q 004351 209 TKLDTKI 215 (759)
Q Consensus 209 TK~D~~~ 215 (759)
||.|+..
T Consensus 351 NK~Dl~~ 357 (476)
T 3gee_A 351 NKLDRAA 357 (476)
T ss_dssp ECTTSCT
T ss_pred ECcCCCC
Confidence 9999863
No 95
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.28 E-value=3.9e-06 Score=91.86 Aligned_cols=123 Identities=20% Similarity=0.251 Sum_probs=69.4
Q ss_pred CCCEEEEEeccCCchHHHHHHHhCCccceecCccccccceEEEEeeCCCCCCCceEEecCCCCCCcccccChHHHHHHHH
Q 004351 23 DAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEIQSFIE 102 (759)
Q Consensus 23 ~lPqIVVVG~QSsGKSSLLEAL~G~~fp~~g~g~cTR~P~~l~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~l~~~Ie 102 (759)
.+|.|++||..++|||||||+|+|..++..+.-..|+-|+
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~---------------------------------------- 217 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPK---------------------------------------- 217 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSC----------------------------------------
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCE----------------------------------------
Confidence 5788999999999999999999998764211111111000
Q ss_pred HHHhhhhhccCCCccccceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeeccc
Q 004351 103 AENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDC 182 (759)
Q Consensus 103 ~~~~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~ 182 (759)
.-.+.+ ++ ..+.++||||++...+ .++ ++.++.+ ..++...+.++++ .+.
T Consensus 218 ------------------~~~i~~--~g-~~v~l~DT~G~i~~lp----~~l---ve~f~~t-l~~~~~aD~il~V-vD~ 267 (364)
T 2qtf_A 218 ------------------RYAIPI--NN-RKIMLVDTVGFIRGIP----PQI---VDAFFVT-LSEAKYSDALILV-IDS 267 (364)
T ss_dssp ------------------EEEEEE--TT-EEEEEEECCCBCSSCC----GGG---HHHHHHH-HHGGGGSSEEEEE-EET
T ss_pred ------------------EEEEEE--CC-EEEEEEeCCCchhcCC----HHH---HHHHHHH-HHHHHhCCEEEEE-EEC
Confidence 001222 22 3468999999866321 111 2333344 3466666655554 444
Q ss_pred CCcC--cH----HHHHHHHHhCcCCCeEEEEecCCCccc
Q 004351 183 SDWS--NA----TTRRVVMQIDPELKRTIIVSTKLDTKI 215 (759)
Q Consensus 183 ~D~~--~~----~~l~lar~~Dp~g~RTIgVlTK~D~~~ 215 (759)
++.. .. .+.++.+.+...+...|.|.||+|+..
T Consensus 268 s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~ 306 (364)
T 2qtf_A 268 TFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKIN 306 (364)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCC
T ss_pred CCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCC
Confidence 3322 11 134566777656778999999999964
No 96
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=98.27 E-value=1.2e-06 Score=84.89 Aligned_cols=28 Identities=25% Similarity=0.431 Sum_probs=24.9
Q ss_pred CCCEEEEEeccCCchHHHHHHHhCCccc
Q 004351 23 DAPAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 23 ~lPqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
....|+|+|+.++|||||+++|++-.|.
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~ 41 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFD 41 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 3458999999999999999999988775
No 97
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=98.27 E-value=3.2e-06 Score=83.54 Aligned_cols=67 Identities=15% Similarity=0.120 Sum_probs=44.4
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccC--CcCc-HHHHHHHHHhCcCCCeEEEEec
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCS--DWSN-ATTRRVVMQIDPELKRTIIVST 209 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~--D~~~-~~~l~lar~~Dp~g~RTIgVlT 209 (759)
.+.|+|+||... ...+...|+++.+.+|+++...+ .+.+ ..++..++...+.+...|.|+|
T Consensus 79 ~l~i~Dt~G~~~----------------~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~N 142 (201)
T 2hup_A 79 KLQIWDTAGQER----------------FRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGN 142 (201)
T ss_dssp EEEEECCTTCGG----------------GHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred EEEEEECCCcHh----------------HHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEE
Confidence 688999999622 23567889998888887764322 1111 2234445555556688999999
Q ss_pred CCCccc
Q 004351 210 KLDTKI 215 (759)
Q Consensus 210 K~D~~~ 215 (759)
|.|+..
T Consensus 143 K~Dl~~ 148 (201)
T 2hup_A 143 KSDLSE 148 (201)
T ss_dssp CTTCGG
T ss_pred CCcccc
Confidence 999964
No 98
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=98.26 E-value=1.5e-06 Score=83.45 Aligned_cols=27 Identities=26% Similarity=0.376 Sum_probs=23.8
Q ss_pred CCEEEEEeccCCchHHHHHHHhCCccc
Q 004351 24 APAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 24 lPqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.+.|+|+|+.++|||||+++|++-.|.
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~~~ 32 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQFV 32 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCCC
Confidence 368999999999999999999976664
No 99
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=98.26 E-value=3.7e-06 Score=82.52 Aligned_cols=118 Identities=15% Similarity=0.127 Sum_probs=69.5
Q ss_pred CCCEEEEEeccCCchHHHHHHHhCCccceecCccccccceEEEEeeCCCCCCCceEEecCCCCCCcccccChHHHHHHHH
Q 004351 23 DAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEIQSFIE 102 (759)
Q Consensus 23 ~lPqIVVVG~QSsGKSSLLEAL~G~~fp~~g~g~cTR~P~~l~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~l~~~Ie 102 (759)
....|+++|+.++|||||++.|.|.-.+ . -| ..
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~~~~-~----~~-----------~~------------------------------- 51 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHKMSP-N----ET-----------LF------------------------------- 51 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSCCCG-G----GG-----------GG-------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhcCCC-c----ce-----------ee-------------------------------
Confidence 4578999999999999999999884222 1 00 00
Q ss_pred HHHhhhhhccCCCccccceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHH---HHHhcCccceeEee
Q 004351 103 AENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLV---RAKMQHREFIILCL 179 (759)
Q Consensus 103 ~~~~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv---~~Yi~~~~~IIL~V 179 (759)
..+....+...+.+.....|.|+|+||...-. .+. ..|+++.+.+|+++
T Consensus 52 ------------~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----------------~~~~~~~~~~~~~~~~i~v~ 103 (196)
T 3llu_A 52 ------------LESTNKIYKDDISNSSFVNFQIWDFPGQMDFF----------------DPTFDYEMIFRGTGALIYVI 103 (196)
T ss_dssp ------------CCCCCSCEEEEECCTTSCCEEEEECCSSCCTT----------------CTTCCHHHHHHTCSEEEEEE
T ss_pred ------------eccccceeeeeccCCCeeEEEEEECCCCHHHH----------------hhhhhcccccccCCEEEEEE
Confidence 01111222333332334579999999964321 122 56788888887766
Q ss_pred cccCCc--CcHHHHHHHHHh--CcCCCeEEEEecCCCccc
Q 004351 180 EDCSDW--SNATTRRVVMQI--DPELKRTIIVSTKLDTKI 215 (759)
Q Consensus 180 ~~~~D~--~~~~~l~lar~~--Dp~g~RTIgVlTK~D~~~ 215 (759)
...+.+ .-........++ ...+...|.|.||.|+..
T Consensus 104 d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~ 143 (196)
T 3llu_A 104 DAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLS 143 (196)
T ss_dssp ETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSC
T ss_pred ECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCc
Confidence 433321 111222333333 234678999999999864
No 100
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=98.26 E-value=2e-06 Score=82.98 Aligned_cols=68 Identities=16% Similarity=0.155 Sum_probs=42.2
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHH----HHHHhCcCCCeEEEE
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRR----VVMQIDPELKRTIIV 207 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~----lar~~Dp~g~RTIgV 207 (759)
..+.|+||||... ...+...|+++.+.+|+++...+...-..... +.+.....+...|.|
T Consensus 62 ~~~~~~Dt~G~~~----------------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv 125 (186)
T 1ksh_A 62 FKLNIWDVGGQKS----------------LRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIF 125 (186)
T ss_dssp EEEEEEEECCSHH----------------HHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEE
T ss_pred EEEEEEECCCCHh----------------HHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEE
Confidence 4689999999732 23456778888887777664332111122222 222223356889999
Q ss_pred ecCCCccc
Q 004351 208 STKLDTKI 215 (759)
Q Consensus 208 lTK~D~~~ 215 (759)
+||.|+..
T Consensus 126 ~nK~Dl~~ 133 (186)
T 1ksh_A 126 ANKQDLPG 133 (186)
T ss_dssp EECTTSTT
T ss_pred EeCccCCC
Confidence 99999964
No 101
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=98.25 E-value=6.2e-07 Score=100.22 Aligned_cols=76 Identities=18% Similarity=0.208 Sum_probs=45.8
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHH-HHHHhcCccceeEeecccCCcCcHHHHHHHHHhCcCCCeEEEEecCC
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESL-VRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKL 211 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~l-v~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~RTIgVlTK~ 211 (759)
.++|+||||+.....-.. .++ ....+ ...|++..+.+||++ ++++....+..+++..+...+...|.|+||+
T Consensus 224 ~~~l~DT~G~~~~~~~~~--~~e----~~~~~~~~~~~~~ad~~llv~-D~~~~~s~~~~~~~~~~~~~~~~iiiv~NK~ 296 (436)
T 2hjg_A 224 EFVIVDTAGMRKKGKVYE--TTE----KYSVLRALKAIDRSEVVAVVL-DGEEGIIEQDKRIAGYAHEAGKAVVIVVNKW 296 (436)
T ss_dssp EEEETTHHHHTCBTTBCC--CCS----HHHHHHHHHHHHHCSEEEEEE-ETTTCCCHHHHHHHHHHHHTTCEEEEEEECG
T ss_pred EEEEEECCCcCcCccccc--hHH----HHHHHHHHHHHHhCCEEEEEE-cCCcCCcHHHHHHHHHHHHcCCcEEEEEECc
Confidence 478999999966432111 011 11112 225777777666555 4433334444566666655688999999999
Q ss_pred Cccc
Q 004351 212 DTKI 215 (759)
Q Consensus 212 D~~~ 215 (759)
|+..
T Consensus 297 Dl~~ 300 (436)
T 2hjg_A 297 DAVD 300 (436)
T ss_dssp GGSC
T ss_pred cCCC
Confidence 9964
No 102
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=98.25 E-value=8.3e-07 Score=86.89 Aligned_cols=66 Identities=18% Similarity=0.213 Sum_probs=41.9
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCc----HHHHHHHHHhCc---CCCeEE
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSN----ATTRRVVMQIDP---ELKRTI 205 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~----~~~l~lar~~Dp---~g~RTI 205 (759)
.+.|+|+||.. ....+...|+++.+.+|+++...+ ... ..++..+....+ .+...|
T Consensus 74 ~~~l~Dt~G~~----------------~~~~~~~~~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~i~~~~~~~~~~~pii 136 (208)
T 2yc2_C 74 ELFLLDTAGSD----------------LYKEQISQYWNGVYYAILVFDVSS-MESFESCKAWFELLKSARPDRERPLRAV 136 (208)
T ss_dssp EEEEEETTTTH----------------HHHHHHSTTCCCCCEEEEEEETTC-HHHHHHHHHHHHHHHHHCSCTTSCCEEE
T ss_pred EEEEEECCCcH----------------HHHHHHHHHHhhCcEEEEEEECCC-HHHHHHHHHHHHHHHHhhcccccCCcEE
Confidence 57899999972 234678889988888777664322 111 123444555554 578999
Q ss_pred EEecCCCccc
Q 004351 206 IVSTKLDTKI 215 (759)
Q Consensus 206 gVlTK~D~~~ 215 (759)
.|+||.|+..
T Consensus 137 lv~nK~Dl~~ 146 (208)
T 2yc2_C 137 LVANKTDLPP 146 (208)
T ss_dssp EEEECC----
T ss_pred EEEECcccch
Confidence 9999999964
No 103
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=98.25 E-value=1.1e-06 Score=82.69 Aligned_cols=27 Identities=30% Similarity=0.408 Sum_probs=24.0
Q ss_pred CCEEEEEeccCCchHHHHHHHhCCccc
Q 004351 24 APAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 24 lPqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
...|+|+|+.++|||||+++|++-.+.
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~ 32 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKGQFH 32 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 357999999999999999999987765
No 104
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=98.25 E-value=1.8e-06 Score=84.59 Aligned_cols=30 Identities=20% Similarity=0.248 Sum_probs=23.7
Q ss_pred CCCCCEEEEEeccCCchHHHHHHHhCCccc
Q 004351 21 PFDAPAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 21 ~i~lPqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
...-..|+++|+.++|||||+++|++-.|.
T Consensus 20 ~~~~~ki~~vG~~~vGKSsli~~l~~~~~~ 49 (190)
T 1m2o_B 20 WNKHGKLLFLGLDNAGKTTLLHMLKNDRLA 49 (190)
T ss_dssp ----CEEEEEESTTSSHHHHHHHHHHSCCC
T ss_pred cCCccEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 344568999999999999999999987664
No 105
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=98.24 E-value=2.8e-06 Score=81.65 Aligned_cols=30 Identities=30% Similarity=0.308 Sum_probs=25.4
Q ss_pred CCCCCEEEEEeccCCchHHHHHHHhCCccc
Q 004351 21 PFDAPAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 21 ~i~lPqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
......|+|+|+.++|||||+++|++-.++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~ 44 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFV 44 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCC
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCC
Confidence 344457899999999999999999987765
No 106
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=98.22 E-value=1.8e-06 Score=83.88 Aligned_cols=27 Identities=22% Similarity=0.348 Sum_probs=23.4
Q ss_pred CCCCEEEEEeccCCchHHHHHHHhCCc
Q 004351 22 FDAPAVLVVGHQTDGKSALVEALMGFQ 48 (759)
Q Consensus 22 i~lPqIVVVG~QSsGKSSLLEAL~G~~ 48 (759)
-....|+|+|+.++|||||+++|+|..
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCC
Confidence 345689999999999999999999987
No 107
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=98.21 E-value=5.1e-07 Score=86.88 Aligned_cols=66 Identities=18% Similarity=0.125 Sum_probs=35.5
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCc----HHHHHHHHHhCcCCCeEEEEe
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSN----ATTRRVVMQIDPELKRTIIVS 208 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~----~~~l~lar~~Dp~g~RTIgVl 208 (759)
.+.|+|+||... ...+...|+++.+.+|+++...+ ..+ ..++..+....+.+...|.|+
T Consensus 58 ~~~l~Dt~G~~~----------------~~~~~~~~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~i~~~~~~~~piilv~ 120 (183)
T 2fu5_C 58 KLQIWDTAGQER----------------FRTITTAYYRGAMGIMLVYDITN-EKSFDNIRNWIRNIEEHASADVEKMILG 120 (183)
T ss_dssp EEEEEEC-------------------------CCTTTTTCSEEEEEEETTC-HHHHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred EEEEEcCCCChh----------------hhhhHHHHHhcCCEEEEEEECcC-HHHHHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 588999999632 12455677888887777664322 111 123344444444567899999
Q ss_pred cCCCccc
Q 004351 209 TKLDTKI 215 (759)
Q Consensus 209 TK~D~~~ 215 (759)
||.|+..
T Consensus 121 nK~Dl~~ 127 (183)
T 2fu5_C 121 NKCDVND 127 (183)
T ss_dssp EC--CCS
T ss_pred ECccCCc
Confidence 9999864
No 108
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=98.21 E-value=1.6e-06 Score=98.40 Aligned_cols=71 Identities=18% Similarity=0.298 Sum_probs=42.2
Q ss_pred CcEEEeCCCCc-CCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHHHHHhCcCCCeEEEEecCC
Q 004351 133 NLTIIDTPGLI-APAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKL 211 (759)
Q Consensus 133 ~LtLVDLPGl~-~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~RTIgVlTK~ 211 (759)
.++|+||||+. ......... .+ .....|+++.+.+|+++- .++....+..++...+ .+...|.|+||.
T Consensus 292 ~~~l~DTaG~~~~~~~~ve~~----gi----~~~~~~~~~aD~vl~VvD-~s~~~s~~~~~il~~l--~~~piivV~NK~ 360 (482)
T 1xzp_A 292 LFRIVDTAGVRSETNDLVERL----GI----ERTLQEIEKADIVLFVLD-ASSPLDEEDRKILERI--KNKRYLVVINKV 360 (482)
T ss_dssp EEEEEESSCCCSSCCTTCCCC----CH----HHHHHHHHHCSEEEEEEE-TTSCCCHHHHHHHHHH--TTSSEEEEEEEC
T ss_pred EEEEEECCCccccchhhHHHH----HH----HHHHHHhhcccEEEEEec-CCCCCCHHHHHHHHHh--cCCCEEEEEECc
Confidence 48999999997 432111000 01 234567777776666554 3322333344555555 256799999999
Q ss_pred Ccc
Q 004351 212 DTK 214 (759)
Q Consensus 212 D~~ 214 (759)
|+.
T Consensus 361 DL~ 363 (482)
T 1xzp_A 361 DVV 363 (482)
T ss_dssp SSC
T ss_pred ccc
Confidence 995
No 109
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=98.21 E-value=5.9e-06 Score=80.10 Aligned_cols=29 Identities=24% Similarity=0.444 Sum_probs=25.2
Q ss_pred CCCCCEEEEEeccCCchHHHHHHHhCCcc
Q 004351 21 PFDAPAVLVVGHQTDGKSALVEALMGFQF 49 (759)
Q Consensus 21 ~i~lPqIVVVG~QSsGKSSLLEAL~G~~f 49 (759)
+-..+.|+++|+.++|||||+++|+|..+
T Consensus 13 ~~~~~ki~ivG~~~vGKSsL~~~l~~~~~ 41 (181)
T 1fzq_A 13 PDQEVRILLLGLDNAGKTTLLKQLASEDI 41 (181)
T ss_dssp CSSCEEEEEEESTTSSHHHHHHHHCCSCC
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34567999999999999999999998754
No 110
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.21 E-value=1.8e-05 Score=85.95 Aligned_cols=28 Identities=36% Similarity=0.598 Sum_probs=25.4
Q ss_pred CCCCEEEEEeccCCchHHHHHHHhCCcc
Q 004351 22 FDAPAVLVVGHQTDGKSALVEALMGFQF 49 (759)
Q Consensus 22 i~lPqIVVVG~QSsGKSSLLEAL~G~~f 49 (759)
...+.|++||..++|||||+++|+|..+
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~ 192 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKP 192 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4678999999999999999999999774
No 111
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=98.20 E-value=2.2e-06 Score=95.62 Aligned_cols=123 Identities=19% Similarity=0.200 Sum_probs=69.0
Q ss_pred CCCEEEEEeccCCchHHHHHHHhCCccceecCccccccceEEEEeeCCCCCCCceEEecCCCCCCcccccChHHHHHHHH
Q 004351 23 DAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEIQSFIE 102 (759)
Q Consensus 23 ~lPqIVVVG~QSsGKSSLLEAL~G~~fp~~g~g~cTR~P~~l~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~l~~~Ie 102 (759)
..+.|+|+|+.++|||||+++|+|..+..+.....
T Consensus 33 ~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~g--------------------------------------------- 67 (423)
T 3qq5_A 33 FRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAG--------------------------------------------- 67 (423)
T ss_dssp CCEEEEEECSCSTTTTTTTTSSCC--------------------------------------------------------
T ss_pred CCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCC---------------------------------------------
Confidence 45789999999999999999999987642210000
Q ss_pred HHHhhhhhccCCCccccceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeeccc
Q 004351 103 AENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDC 182 (759)
Q Consensus 103 ~~~~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~ 182 (759)
.+-++....++......++|+||||+.....-.+. .+ +-...|+.+.+.+|+++...
T Consensus 68 --------------tT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~--------~~-~~~~~~l~~aD~vllVvD~~ 124 (423)
T 3qq5_A 68 --------------TTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRL--------RV-EKARRVFYRADCGILVTDSA 124 (423)
T ss_dssp ----------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCC--------CH-HHHHHHHTSCSEEEEECSSS
T ss_pred --------------eeeeeEEEEEEECCCCeEEEEECcCCCcccchhHH--------HH-HHHHHHHhcCCEEEEEEeCC
Confidence 00011111222223337899999999764321111 01 22456777888777766331
Q ss_pred CCcCcHHHHHHHHHhCcCCCeEEEEecCCCcccc
Q 004351 183 SDWSNATTRRVVMQIDPELKRTIIVSTKLDTKIP 216 (759)
Q Consensus 183 ~D~~~~~~l~lar~~Dp~g~RTIgVlTK~D~~~~ 216 (759)
.......++..+++. +...|.|+||.|+...
T Consensus 125 ~~~~~~~~l~~l~~~---~~piIvV~NK~Dl~~~ 155 (423)
T 3qq5_A 125 PTPYEDDVVNLFKEM---EIPFVVVVNKIDVLGE 155 (423)
T ss_dssp CCHHHHHHHHHHHHT---TCCEEEECCCCTTTTC
T ss_pred ChHHHHHHHHHHHhc---CCCEEEEEeCcCCCCc
Confidence 111122234444444 6789999999999643
No 112
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=98.20 E-value=7.4e-07 Score=87.49 Aligned_cols=28 Identities=21% Similarity=0.409 Sum_probs=25.1
Q ss_pred CCCEEEEEeccCCchHHHHHHHhCCccc
Q 004351 23 DAPAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 23 ~lPqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
....|+|+|+.++|||||+++|+|..|.
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~ 34 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKFS 34 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCC
Confidence 3468999999999999999999998875
No 113
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=98.19 E-value=3.2e-06 Score=82.95 Aligned_cols=27 Identities=22% Similarity=0.269 Sum_probs=24.0
Q ss_pred CCEEEEEeccCCchHHHHHHHhCCccc
Q 004351 24 APAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 24 lPqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
-..|+|+|+.++|||||+++|++-.|+
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~~~~~ 55 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKLGEIV 55 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCSSCCE
T ss_pred ccEEEEECCCCCCHHHHHHHHHhCCcc
Confidence 458999999999999999999887664
No 114
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.18 E-value=3.5e-06 Score=94.00 Aligned_cols=84 Identities=13% Similarity=0.154 Sum_probs=49.5
Q ss_pred CCcEEEeCCCCcCCCCCCC-chhh-HHHHHHHHHHHHHHhcCc-------c----ceeEeecccCCcCcHHHHHHHHHhC
Q 004351 132 PNLTIIDTPGLIAPAPGRK-NRAL-QDQARAVESLVRAKMQHR-------E----FIILCLEDCSDWSNATTRRVVMQID 198 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q-~~~~-e~~~~~v~~lv~~Yi~~~-------~----~IIL~V~~~~D~~~~~~l~lar~~D 198 (759)
++||++|+||+........ -..+ +.....+..++..|+.-. + ++++++++++..-+...+.+++.+.
T Consensus 95 ~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~ 174 (427)
T 2qag_B 95 LKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD 174 (427)
T ss_dssp EEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC
T ss_pred cccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 5899999999976432100 0000 011234445555553211 1 2466677765444555689999998
Q ss_pred cCCCeEEEEecCCCcccc
Q 004351 199 PELKRTIIVSTKLDTKIP 216 (759)
Q Consensus 199 p~g~RTIgVlTK~D~~~~ 216 (759)
.+.+.|.|+||.|.+.+
T Consensus 175 -~~~~vI~Vi~KtD~Lt~ 191 (427)
T 2qag_B 175 -SKVNIIPIIAKADAISK 191 (427)
T ss_dssp -SCSEEEEEESCGGGSCH
T ss_pred -hCCCEEEEEcchhccch
Confidence 78899999999999754
No 115
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=98.16 E-value=2.6e-06 Score=85.43 Aligned_cols=27 Identities=26% Similarity=0.426 Sum_probs=24.7
Q ss_pred CCEEEEEeccCCchHHHHHHHhCCccc
Q 004351 24 APAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 24 lPqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
...|+|+|+.++|||||+++|++-.|.
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~~~~~~ 39 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFTKNEFN 39 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHHCCCC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCCCC
Confidence 468999999999999999999998875
No 116
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=98.16 E-value=2.9e-06 Score=82.30 Aligned_cols=28 Identities=21% Similarity=0.220 Sum_probs=24.2
Q ss_pred CCCEEEEEeccCCchHHHHHHHhCCccc
Q 004351 23 DAPAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 23 ~lPqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.-..|+|+|+.++|||||+++|.+-.++
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~ 48 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVV 48 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 3568999999999999999999876654
No 117
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.15 E-value=7.5e-06 Score=85.95 Aligned_cols=26 Identities=38% Similarity=0.549 Sum_probs=22.8
Q ss_pred EEEEEeccCCchHHHHHHHhCCccce
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFNH 51 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp~ 51 (759)
.+.+||..|+||||||++|+|...|.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~ 29 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSR 29 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 58999999999999999999998774
No 118
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.15 E-value=9.5e-06 Score=79.94 Aligned_cols=25 Identities=24% Similarity=0.302 Sum_probs=21.6
Q ss_pred CEEEEEeccCCchHHHHHHHhCCcc
Q 004351 25 PAVLVVGHQTDGKSALVEALMGFQF 49 (759)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~~f 49 (759)
..|+++|..++|||||+++|+|..|
T Consensus 27 ~~v~lvG~~g~GKSTLl~~l~g~~~ 51 (210)
T 1pui_A 27 IEVAFAGRSNAGKSSALNTLTNQKS 51 (210)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC--
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCc
Confidence 3699999999999999999999875
No 119
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.15 E-value=9.7e-06 Score=90.36 Aligned_cols=81 Identities=17% Similarity=0.201 Sum_probs=41.1
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHh-----------cCccc--eeEeeccc-CCcCcHHHHHHHHHh
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKM-----------QHREF--IILCLEDC-SDWSNATTRRVVMQI 197 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi-----------~~~~~--IIL~V~~~-~D~~~~~~l~lar~~ 197 (759)
++|+++|+||+.....+.. ......+.+......|+ .+++. +++++.+. ..+. .....+.+.+
T Consensus 88 ~~Ltv~Dt~g~~~~~~~~~--~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~-~~d~~~lk~L 164 (418)
T 2qag_C 88 LLLTIVDTPGFGDAVDNSN--CWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLK-PLDIEFMKRL 164 (418)
T ss_dssp EEEEEEECC-------------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCC-HHHHHHHHHH
T ss_pred cceeeeechhhhhhccchh--hHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCC-HHHHHHHHHH
Confidence 5799999999976432110 01122333444555564 33432 33344443 2232 3335677777
Q ss_pred CcCCCeEEEEecCCCcccc
Q 004351 198 DPELKRTIIVSTKLDTKIP 216 (759)
Q Consensus 198 Dp~g~RTIgVlTK~D~~~~ 216 (759)
.+ +..+|.|+||+|++.+
T Consensus 165 ~~-~v~iIlVinK~Dll~~ 182 (418)
T 2qag_C 165 HE-KVNIIPLIAKADTLTP 182 (418)
T ss_dssp TT-TSEEEEEEESTTSSCH
T ss_pred hc-cCcEEEEEEcccCccH
Confidence 65 7889999999999743
No 120
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=98.14 E-value=4.2e-07 Score=89.38 Aligned_cols=66 Identities=18% Similarity=0.178 Sum_probs=38.1
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCc----HHHHHHHHHhCcCCCeEEEEe
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSN----ATTRRVVMQIDPELKRTIIVS 208 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~----~~~l~lar~~Dp~g~RTIgVl 208 (759)
.+.|+||||..... .+...|+++.+.+|+++. .++... ..++..+....+.+...|.|+
T Consensus 83 ~~~i~Dt~G~~~~~----------------~~~~~~~~~~d~~i~v~d-~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~ 145 (199)
T 3l0i_B 83 KLQIWDTAGQERFR----------------TITSSYYRGAHGIIVVYD-VTDQESFNNVKQWLQEIDRYASENVNKLLVG 145 (199)
T ss_dssp EEEEECCTTCTTCC----------------CCSCC--CCCSEEEECC--CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-
T ss_pred EEEEEECCCcHhHH----------------HHHHHHhhcCCEEEEEEE-CCCHHHHHHHHHHHHHHHHhccCCCCEEEEE
Confidence 58899999954321 233457777777776653 322222 223444555556678899999
Q ss_pred cCCCccc
Q 004351 209 TKLDTKI 215 (759)
Q Consensus 209 TK~D~~~ 215 (759)
||.|+..
T Consensus 146 nK~Dl~~ 152 (199)
T 3l0i_B 146 NKCDLTT 152 (199)
T ss_dssp CCSSCC-
T ss_pred ECccCCc
Confidence 9999863
No 121
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=98.14 E-value=9e-07 Score=96.16 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=22.9
Q ss_pred CCEEEEEeccCCchHHHHHHHhCCc
Q 004351 24 APAVLVVGHQTDGKSALVEALMGFQ 48 (759)
Q Consensus 24 lPqIVVVG~QSsGKSSLLEAL~G~~ 48 (759)
+|.|++||..++||||||++|++..
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~ 182 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAK 182 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEEC
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCC
Confidence 6789999999999999999998854
No 122
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.13 E-value=2.5e-06 Score=83.02 Aligned_cols=66 Identities=15% Similarity=0.228 Sum_probs=42.0
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCC--cCcH--HHHHHHHHhCcCCCeEEEEe
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSD--WSNA--TTRRVVMQIDPELKRTIIVS 208 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D--~~~~--~~l~lar~~Dp~g~RTIgVl 208 (759)
.+.|+|+||..... .+...|+++.+.+|+++...+. +.+. .++..++...+ +...|.|+
T Consensus 67 ~~~i~D~~G~~~~~----------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~ 129 (194)
T 2atx_A 67 LLGLYDTAGQEDYD----------------RLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP-NVPFLLIG 129 (194)
T ss_dssp EEEEECCCCSSSST----------------TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEE
T ss_pred EEEEEECCCCcchh----------------HHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEE
Confidence 57899999975421 3445678888877776643221 1111 23445555544 67899999
Q ss_pred cCCCccc
Q 004351 209 TKLDTKI 215 (759)
Q Consensus 209 TK~D~~~ 215 (759)
||.|+..
T Consensus 130 nK~Dl~~ 136 (194)
T 2atx_A 130 TQIDLRD 136 (194)
T ss_dssp ECTTSTT
T ss_pred EChhhcc
Confidence 9999953
No 123
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.12 E-value=1e-05 Score=79.02 Aligned_cols=28 Identities=29% Similarity=0.355 Sum_probs=25.0
Q ss_pred CCCEEEEEeccCCchHHHHHHHhCCccc
Q 004351 23 DAPAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 23 ~lPqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
...+|+|+|+.++|||||+++|++-.|+
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~ 54 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFI 54 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCC
Confidence 3468999999999999999999998775
No 124
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.11 E-value=3.8e-06 Score=91.78 Aligned_cols=81 Identities=15% Similarity=0.138 Sum_probs=41.5
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccc-------------eeEeecccCCcCcHHHHHHHHHhC
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREF-------------IILCLEDCSDWSNATTRRVVMQID 198 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~-------------IIL~V~~~~D~~~~~~l~lar~~D 198 (759)
..|+|+||||+........ ........+.+....|+..... ++++|.++...-......+.+.+.
T Consensus 95 ~~l~i~DTpG~gd~~~~~e--~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~ 172 (361)
T 2qag_A 95 LRLTVVDTPGYGDAINCRD--CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH 172 (361)
T ss_dssp EEEEEEC----------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC
T ss_pred cceEEEEeccccccCccHH--HHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc
Confidence 3689999999965431110 0011123344455577765543 333344444444555567777776
Q ss_pred cCCCeEEEEecCCCccc
Q 004351 199 PELKRTIIVSTKLDTKI 215 (759)
Q Consensus 199 p~g~RTIgVlTK~D~~~ 215 (759)
.+...|.|+||+|+..
T Consensus 173 -~~~piIlV~NK~Dl~~ 188 (361)
T 2qag_A 173 -NKVNIVPVIAKADTLT 188 (361)
T ss_dssp -S-SCEEEEEECCSSSC
T ss_pred -cCCCEEEEEECCCCCC
Confidence 4678999999999964
No 125
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.11 E-value=2.4e-06 Score=83.07 Aligned_cols=28 Identities=32% Similarity=0.351 Sum_probs=24.7
Q ss_pred CCCEEEEEeccCCchHHHHHHHhCCccc
Q 004351 23 DAPAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 23 ~lPqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
....|+|+|+.++|||||+++|++-.|.
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~ 34 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFR 34 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCC
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCC
Confidence 3468999999999999999999997664
No 126
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.11 E-value=1.7e-06 Score=85.65 Aligned_cols=26 Identities=27% Similarity=0.393 Sum_probs=23.9
Q ss_pred CEEEEEeccCCchHHHHHHHhCCccc
Q 004351 25 PAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
..|+|+|+.++|||||+++|++-.|+
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~~~ 51 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKDEFP 51 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSCC
T ss_pred cEEEEECcCCCCHHHHHHHHhcCCCC
Confidence 47999999999999999999997775
No 127
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=98.09 E-value=2.9e-06 Score=81.29 Aligned_cols=66 Identities=26% Similarity=0.301 Sum_probs=42.0
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccC--CcCcH--HHHHHHHHhCcCCCeEEEEe
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCS--DWSNA--TTRRVVMQIDPELKRTIIVS 208 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~--D~~~~--~~l~lar~~Dp~g~RTIgVl 208 (759)
.|.|+|+||.... ..+...|+++.+.+|+++...+ .+.+. .++..++...+ +...|.|+
T Consensus 54 ~~~i~Dt~G~~~~----------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~ 116 (186)
T 1mh1_A 54 NLGLWDTAGQEDY----------------DRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVG 116 (186)
T ss_dssp EEEEECCCCSGGG----------------TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST-TSCEEEEE
T ss_pred EEEEEECCCCHhH----------------HHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCC-CCCEEEEe
Confidence 4779999998432 1344567888887777664322 11121 23445555545 67899999
Q ss_pred cCCCccc
Q 004351 209 TKLDTKI 215 (759)
Q Consensus 209 TK~D~~~ 215 (759)
||.|+..
T Consensus 117 nK~Dl~~ 123 (186)
T 1mh1_A 117 TKLDLRD 123 (186)
T ss_dssp ECHHHHT
T ss_pred Ecccccc
Confidence 9999853
No 128
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=98.08 E-value=2.3e-06 Score=83.86 Aligned_cols=29 Identities=21% Similarity=0.242 Sum_probs=21.8
Q ss_pred CCCCEEEEEeccCCchHHHHHHHhCCccc
Q 004351 22 FDAPAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 22 i~lPqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
-....|+|+|+.++|||||+++|++-.|+
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~~~ 46 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNGYP 46 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC----
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCC
Confidence 34568999999999999999999998765
No 129
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=98.06 E-value=7e-06 Score=94.15 Aligned_cols=73 Identities=11% Similarity=0.163 Sum_probs=49.8
Q ss_pred EEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHHHHHhCcCCCe
Q 004351 124 IKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKR 203 (759)
Q Consensus 124 leI~~p~~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~R 203 (759)
+.+.+. ...++||||||...-. ..+..|++..+.+|++|.+. +........+.+.+...+..
T Consensus 75 ~~~~~~-~~~i~liDTPG~~df~----------------~~~~~~l~~aD~allVvDa~-~g~~~~t~~~~~~~~~~~iP 136 (528)
T 3tr5_A 75 MQFPYK-DYLINLLDTPGHADFT----------------EDTYRTLTAVDSALMVIDAA-KGVEPRTIKLMEVCRLRHTP 136 (528)
T ss_dssp EEEEET-TEEEEEECCCCSTTCC----------------HHHHHGGGGCSEEEEEEETT-TCSCHHHHHHHHHHHTTTCC
T ss_pred EEEEeC-CEEEEEEECCCchhHH----------------HHHHHHHHhCCEEEEEEeCC-CCCCHHHHHHHHHHHHcCCC
Confidence 344443 3579999999985421 34677888888777665443 33444555666666666788
Q ss_pred EEEEecCCCcc
Q 004351 204 TIIVSTKLDTK 214 (759)
Q Consensus 204 TIgVlTK~D~~ 214 (759)
.|.|+||.|+.
T Consensus 137 iivviNK~Dl~ 147 (528)
T 3tr5_A 137 IMTFINKMDRD 147 (528)
T ss_dssp EEEEEECTTSC
T ss_pred EEEEEeCCCCc
Confidence 99999999995
No 130
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=98.05 E-value=3.4e-06 Score=84.19 Aligned_cols=66 Identities=23% Similarity=0.245 Sum_probs=32.5
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccC--CcCc--HHHHHHHHHhCcCCCeEEEEe
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCS--DWSN--ATTRRVVMQIDPELKRTIIVS 208 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~--D~~~--~~~l~lar~~Dp~g~RTIgVl 208 (759)
.|.|+|+||... ...+...|+++.+.+|+++...+ .+.+ ..++..++...+ +...|.|+
T Consensus 83 ~l~l~Dt~G~~~----------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~ 145 (214)
T 2j1l_A 83 HLHIWDTAGQDD----------------YDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCK-KVPIIVVG 145 (214)
T ss_dssp EEEEEEC-------------------------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCS-SCCEEEEE
T ss_pred EEEEEECCCchh----------------hhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCC-CCCEEEEE
Confidence 578999999532 22456678888887777664322 1111 123444455443 57899999
Q ss_pred cCCCccc
Q 004351 209 TKLDTKI 215 (759)
Q Consensus 209 TK~D~~~ 215 (759)
||.|+..
T Consensus 146 nK~Dl~~ 152 (214)
T 2j1l_A 146 CKTDLRK 152 (214)
T ss_dssp ECGGGGS
T ss_pred EChhhhc
Confidence 9999963
No 131
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=98.04 E-value=3.3e-06 Score=83.18 Aligned_cols=66 Identities=23% Similarity=0.268 Sum_probs=41.4
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccC--CcCc--HHHHHHHHHhCcCCCeEEEEe
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCS--DWSN--ATTRRVVMQIDPELKRTIIVS 208 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~--D~~~--~~~l~lar~~Dp~g~RTIgVl 208 (759)
.+.|+|+||.... ..+...|+++.+.+|+++...+ .+.. ..+...++...+ +...+.|+
T Consensus 74 ~l~i~Dt~G~~~~----------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~ 136 (201)
T 2gco_A 74 ELALWDTAGQEDY----------------DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVG 136 (201)
T ss_dssp EEEEECCCCSGGG----------------TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEE
T ss_pred EEEEEECCCchhH----------------HHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEE
Confidence 5789999996331 1344458888887777664221 1111 224455555543 67899999
Q ss_pred cCCCccc
Q 004351 209 TKLDTKI 215 (759)
Q Consensus 209 TK~D~~~ 215 (759)
||.|+..
T Consensus 137 nK~Dl~~ 143 (201)
T 2gco_A 137 NKKDLRQ 143 (201)
T ss_dssp ECGGGTT
T ss_pred ecHHhhc
Confidence 9999963
No 132
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=98.04 E-value=1.6e-06 Score=99.55 Aligned_cols=114 Identities=22% Similarity=0.293 Sum_probs=72.3
Q ss_pred CCEEEEEeccCCchHHHHHHHhCCccceecCccccccceEEEEeeCCCCCCCceEEecCCCCCCcccccChHHHHHHHHH
Q 004351 24 APAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEIQSFIEA 103 (759)
Q Consensus 24 lPqIVVVG~QSsGKSSLLEAL~G~~fp~~g~g~cTR~P~~l~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~l~~~Ie~ 103 (759)
.|.|+|+|+.++||||||++|++-.+.....++.|+ ... .
T Consensus 4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~--------------------~i~------~-------------- 43 (537)
T 3izy_P 4 SPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQ--------------------HIG------A-------------- 43 (537)
T ss_dssp CCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCC--------------------CTT------S--------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeE--------------------EEe------E--------------
Confidence 589999999999999999999998876322111110 000 0
Q ss_pred HHhhhhhccCCCccccceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccC
Q 004351 104 ENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCS 183 (759)
Q Consensus 104 ~~~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~ 183 (759)
..+ ..+....++|+||||...-. .+...|++..+.+||+|. ++
T Consensus 44 -----------~~v---------~~~~g~~i~~iDTPGhe~f~----------------~~~~~~~~~aD~vILVVD-a~ 86 (537)
T 3izy_P 44 -----------FLV---------SLPSGEKITFLDTPGHAAFS----------------AMRARGTQVTDIVILVVA-AD 86 (537)
T ss_dssp -----------CCB---------CSSCSSCCBCEECSSSCCTT----------------TSBBSSSBSBSSCEEECB-SS
T ss_pred -----------EEE---------EeCCCCEEEEEECCChHHHH----------------HHHHHHHccCCEEEEEEE-CC
Confidence 000 01112358999999963321 233456677777766654 43
Q ss_pred CcCcHHHHHHHHHhCcCCCeEEEEecCCCcc
Q 004351 184 DWSNATTRRVVMQIDPELKRTIIVSTKLDTK 214 (759)
Q Consensus 184 D~~~~~~l~lar~~Dp~g~RTIgVlTK~D~~ 214 (759)
+-...++.+..+.+...+.+.|.|+||.|+.
T Consensus 87 dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~ 117 (537)
T 3izy_P 87 DGVMKQTVESIQHAKDAHVPIVLAINKCDKA 117 (537)
T ss_dssp SCCCHHHHHHHHHHHTTTCCEEECCBSGGGT
T ss_pred CCccHHHHHHHHHHHHcCCcEEEEEeccccc
Confidence 4445556666666666677899999999985
No 133
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=98.04 E-value=2.5e-06 Score=96.29 Aligned_cols=72 Identities=14% Similarity=0.266 Sum_probs=34.0
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHHHHHhCcCCCeEEEEecCCC
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKLD 212 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~RTIgVlTK~D 212 (759)
+++|+||||+...... ++ ..--.....|+...+.+++++. .++........+.+.+.. ...|.|+||.|
T Consensus 273 ~v~liDT~G~~~~~~~-----ve---~~gi~~~~~~~~~aD~vl~VvD-~s~~~~~~~~~i~~~l~~--~piivV~NK~D 341 (462)
T 3geh_A 273 PVQVLDTAGIRETSDQ-----VE---KIGVERSRQAANTADLVLLTID-AATGWTTGDQEIYEQVKH--RPLILVMNKID 341 (462)
T ss_dssp EEEECC----------------------------CCCCSCSEEEEEEE-TTTCSCHHHHHHHHHHTT--SCEEEEEECTT
T ss_pred EEEEEECCccccchhH-----HH---HHHHHHHhhhhhcCCEEEEEec-cCCCCCHHHHHHHHhccC--CcEEEEEECCC
Confidence 5789999999542100 00 0001224456777776665554 333333344555565543 57999999999
Q ss_pred ccc
Q 004351 213 TKI 215 (759)
Q Consensus 213 ~~~ 215 (759)
+..
T Consensus 342 l~~ 344 (462)
T 3geh_A 342 LVE 344 (462)
T ss_dssp SSC
T ss_pred CCc
Confidence 963
No 134
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=98.00 E-value=1.2e-05 Score=78.41 Aligned_cols=26 Identities=27% Similarity=0.423 Sum_probs=23.8
Q ss_pred CEEEEEeccCCchHHHHHHHhCCccc
Q 004351 25 PAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
-.|+|+|+.++|||||+++|++-.|+
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~~~~ 47 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTKRFI 47 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSCC
T ss_pred EEEEEECCCCCcHHHHHHHHHhCCCC
Confidence 47999999999999999999988775
No 135
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=97.98 E-value=4.6e-06 Score=82.47 Aligned_cols=65 Identities=23% Similarity=0.286 Sum_probs=40.9
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccC--CcCc--HHHHHHHHHhCcCCCeEEEEe
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCS--DWSN--ATTRRVVMQIDPELKRTIIVS 208 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~--D~~~--~~~l~lar~~Dp~g~RTIgVl 208 (759)
.+.|+|+||..... .+...|+++.+.+|+++...+ .+.+ ..++..++...| +...|.|+
T Consensus 58 ~~~i~Dt~G~~~~~----------------~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~ 120 (212)
T 2j0v_A 58 NLGLWDTAGQEDYS----------------RLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAP-NVPIVLVG 120 (212)
T ss_dssp EEEEECCCCCCCCC----------------C--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-TCCEEEEE
T ss_pred EEEEEECCCcHHHH----------------HHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEE
Confidence 57889999985421 234568888888877664221 1111 134455555554 67899999
Q ss_pred cCCCcc
Q 004351 209 TKLDTK 214 (759)
Q Consensus 209 TK~D~~ 214 (759)
||.|+.
T Consensus 121 nK~Dl~ 126 (212)
T 2j0v_A 121 TKLDLR 126 (212)
T ss_dssp ECHHHH
T ss_pred eCHHhh
Confidence 999985
No 136
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=97.98 E-value=5.5e-05 Score=72.88 Aligned_cols=78 Identities=12% Similarity=0.103 Sum_probs=46.5
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcC---cHHHH----HHHHHh--CcCCCe
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWS---NATTR----RVVMQI--DPELKR 203 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~---~~~~l----~lar~~--Dp~g~R 203 (759)
.+.|+||||...- ..+...|+++.+.+|+++... +.. +...+ ....++ ...+..
T Consensus 75 ~~~i~Dt~G~~~~----------------~~~~~~~~~~~d~~i~v~D~~-~~~~~~~~~s~~~l~~~l~~~~~~~~~~p 137 (198)
T 3t1o_A 75 RFHLYTVPGQVFY----------------NASRKLILRGVDGIVFVADSA-PNRLRANAESMRNMRENLAEYGLTLDDVP 137 (198)
T ss_dssp EEEEEECCSCCSC----------------SHHHHHHTTTCCEEEEEEECC-GGGHHHHHHHHHHHHHHHHHTTCCTTSSC
T ss_pred EEEEEeCCChHHH----------------HHHHHHHHhcCCEEEEEEECC-cchhhHhHHHHHHHHHHHHhhccccCCCC
Confidence 4788999997432 146667899988888776433 111 11122 223333 335678
Q ss_pred EEEEecCCCcccccccChhhHHHhhC
Q 004351 204 TIIVSTKLDTKIPQFARASDVEVFLS 229 (759)
Q Consensus 204 TIgVlTK~D~~~~~~~~~~~~~~~L~ 229 (759)
.|.|+||.|+... ....++..++.
T Consensus 138 iilv~NK~Dl~~~--~~~~~~~~~~~ 161 (198)
T 3t1o_A 138 IVIQVNKRDLPDA--LPVEMVRAVVD 161 (198)
T ss_dssp EEEEEECTTSTTC--CCHHHHHHHHC
T ss_pred EEEEEEchhcccc--cCHHHHHHHHH
Confidence 9999999998532 22334445543
No 137
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=97.98 E-value=1.3e-05 Score=78.98 Aligned_cols=28 Identities=32% Similarity=0.394 Sum_probs=24.1
Q ss_pred CCCEEEEEeccCCchHHHHHHHhCCccc
Q 004351 23 DAPAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 23 ~lPqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
....|+|||+.++|||||++.|+|..+.
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~ 49 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGGLQGD 49 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCCEECC
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhccCC
Confidence 3468999999999999999999886653
No 138
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=97.97 E-value=9.8e-06 Score=89.55 Aligned_cols=67 Identities=19% Similarity=0.197 Sum_probs=42.1
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCc---HHHHHHHHHhCcCCCeEEEEe
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSN---ATTRRVVMQIDPELKRTIIVS 208 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~---~~~l~lar~~Dp~g~RTIgVl 208 (759)
..++|+||||... .......|++..+.+||+|.+...... .+.+.+++.+.. ...|.|+
T Consensus 75 ~~~~iiDtPGh~~----------------~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~--~~iivvi 136 (403)
T 3sjy_A 75 RRISFIDAPGHEV----------------LMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGV--KNLIIVQ 136 (403)
T ss_dssp EEEEEEECCCCGG----------------GHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTC--CCEEEEE
T ss_pred ceEEEEECCCcHH----------------HHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCC--CCEEEEE
Confidence 3689999999421 123455677888877777654432222 233455555432 3689999
Q ss_pred cCCCcccc
Q 004351 209 TKLDTKIP 216 (759)
Q Consensus 209 TK~D~~~~ 216 (759)
||.|+..+
T Consensus 137 NK~Dl~~~ 144 (403)
T 3sjy_A 137 NKVDVVSK 144 (403)
T ss_dssp ECGGGSCH
T ss_pred ECccccch
Confidence 99999643
No 139
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=97.97 E-value=3.6e-06 Score=80.54 Aligned_cols=27 Identities=22% Similarity=0.278 Sum_probs=24.4
Q ss_pred CCEEEEEeccCCchHHHHHHHhCCccc
Q 004351 24 APAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 24 lPqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
...|+|+|+.++|||||+++|++-.|+
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~~~~ 34 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSNTFP 34 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSCCC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 468999999999999999999987765
No 140
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=97.96 E-value=1e-05 Score=90.59 Aligned_cols=82 Identities=17% Similarity=0.165 Sum_probs=47.4
Q ss_pred cccceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcC------cHHH
Q 004351 117 FSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWS------NATT 190 (759)
Q Consensus 117 fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~------~~~~ 190 (759)
.+-+.....++.++ ..++|+||||... .+ .....|++..+.+||+|.+..... ..++
T Consensus 81 iTid~~~~~~~~~~-~~~~iiDTPGh~~---------------f~-~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt 143 (439)
T 3j2k_7 81 KTVEVGRAYFETEK-KHFTILDAPGHKS---------------FV-PNMIGGASQADLAVLVISARKGEFETGFEKGGQT 143 (439)
T ss_pred ceEEEeEEEEecCC-eEEEEEECCChHH---------------HH-HHHHhhHhhCCEEEEEEECCCCccccccCCCchH
Confidence 33344444555544 3899999999621 12 344456778887777775433211 1223
Q ss_pred HHHHHHhCcCCCe-EEEEecCCCccc
Q 004351 191 RRVVMQIDPELKR-TIIVSTKLDTKI 215 (759)
Q Consensus 191 l~lar~~Dp~g~R-TIgVlTK~D~~~ 215 (759)
.+.+..+...|.+ .|.|+||.|+..
T Consensus 144 ~e~l~~~~~~~v~~iIvviNK~Dl~~ 169 (439)
T 3j2k_7 144 REHAMLAKTAGVKHLIVLINKMDDPT 169 (439)
T ss_pred HHHHHHHHHcCCCeEEEEeecCCCcc
Confidence 3333333334555 899999999853
No 141
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=97.96 E-value=9.5e-06 Score=77.53 Aligned_cols=27 Identities=22% Similarity=0.388 Sum_probs=24.2
Q ss_pred CCEEEEEeccCCchHHHHHHHhCCccc
Q 004351 24 APAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 24 lPqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
--.|+|+|+.++|||||++.|++-.|.
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~~~~ 33 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTGSYQ 33 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHSCCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCC
Confidence 347999999999999999999998775
No 142
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=97.94 E-value=3.4e-06 Score=82.27 Aligned_cols=28 Identities=29% Similarity=0.345 Sum_probs=24.8
Q ss_pred CCCEEEEEeccCCchHHHHHHHhCCccc
Q 004351 23 DAPAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 23 ~lPqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
....|+|+|+.++|||||+++|++-.|+
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~~~ 49 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGEIP 49 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCC
Confidence 3458999999999999999999998875
No 143
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=97.94 E-value=3.7e-06 Score=83.26 Aligned_cols=29 Identities=28% Similarity=0.283 Sum_probs=24.3
Q ss_pred CCCCEEEEEeccCCchHHHHHHHhCCccc
Q 004351 22 FDAPAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 22 i~lPqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
-+-..|+|+|+.++|||||+++|++-.|.
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~ 56 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFP 56 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCC
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCC
Confidence 34468999999999999999999987765
No 144
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=97.89 E-value=9.7e-06 Score=78.41 Aligned_cols=27 Identities=30% Similarity=0.386 Sum_probs=24.3
Q ss_pred CCEEEEEeccCCchHHHHHHHhCCccc
Q 004351 24 APAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 24 lPqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
...|+|+|+.++|||||+++|++-.|+
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~~~~ 33 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKDCFP 33 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCC
T ss_pred EEEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 357999999999999999999998775
No 145
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.89 E-value=1.9e-05 Score=88.16 Aligned_cols=28 Identities=36% Similarity=0.457 Sum_probs=25.2
Q ss_pred CCCEEEEEeccCCchHHHHHHHhCCccc
Q 004351 23 DAPAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 23 ~lPqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
..+.|++||+.++|||||+++|+|..+.
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~ 206 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERA 206 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTE
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCccc
Confidence 4579999999999999999999998754
No 146
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=97.11 E-value=1.7e-06 Score=85.30 Aligned_cols=27 Identities=30% Similarity=0.357 Sum_probs=24.0
Q ss_pred CCEEEEEeccCCchHHHHHHHhCCccc
Q 004351 24 APAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 24 lPqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
-..|+|+|+.++|||||+++|++-.|+
T Consensus 30 ~~ki~v~G~~~~GKSsli~~l~~~~~~ 56 (204)
T 3th5_A 30 AIKCVVVGDGAVGKTCLLISYTTNAFP 56 (204)
Confidence 457999999999999999999987765
No 147
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=97.87 E-value=2.4e-05 Score=85.82 Aligned_cols=61 Identities=16% Similarity=0.242 Sum_probs=39.0
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCc--HHHHHHHHHhCcCCCeE-EEEec
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSN--ATTRRVVMQIDPELKRT-IIVST 209 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~--~~~l~lar~~Dp~g~RT-IgVlT 209 (759)
.++|+||||...- +.+|+ .+++..+.+||+|. ...+.. .+.+.+++.. |.+. |.|+|
T Consensus 61 ~i~iiDtPGh~~f---------------~~~~~-~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~---~i~~~ivvvN 120 (370)
T 2elf_A 61 NMVFVDAHSYPKT---------------LKSLI-TALNISDIAVLCIP-PQGLDAHTGECIIALDLL---GFKHGIIALT 120 (370)
T ss_dssp EEEEEECTTTTTC---------------HHHHH-HHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHT---TCCEEEEEEC
T ss_pred EEEEEECCChHHH---------------HHHHH-HHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHc---CCCeEEEEEE
Confidence 4899999997431 22333 45678888888776 433332 2334445443 5555 99999
Q ss_pred -CCCc
Q 004351 210 -KLDT 213 (759)
Q Consensus 210 -K~D~ 213 (759)
|+|+
T Consensus 121 NK~Dl 125 (370)
T 2elf_A 121 RSDST 125 (370)
T ss_dssp CGGGS
T ss_pred eccCC
Confidence 9998
No 148
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=97.87 E-value=3.9e-06 Score=83.79 Aligned_cols=66 Identities=17% Similarity=0.202 Sum_probs=40.7
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCC--cCc-HHHHHHHHHhCcCCCeEEEEec
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSD--WSN-ATTRRVVMQIDPELKRTIIVST 209 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D--~~~-~~~l~lar~~Dp~g~RTIgVlT 209 (759)
.+.|+||||..... .+...|+++.+.+|+++...+. +.+ ..++..+....+ +...|.|+|
T Consensus 65 ~~~i~Dt~G~~~~~----------------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ilv~n 127 (221)
T 3gj0_A 65 KFNVWDTAGQEKFG----------------GLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGN 127 (221)
T ss_dssp EEEEEEECSGGGTS----------------CCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHST-TCCEEEEEE
T ss_pred EEEEEeCCChHHHh----------------HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEE
Confidence 57899999964321 3445678888877776643221 111 223444444432 578999999
Q ss_pred CCCccc
Q 004351 210 KLDTKI 215 (759)
Q Consensus 210 K~D~~~ 215 (759)
|.|+..
T Consensus 128 K~Dl~~ 133 (221)
T 3gj0_A 128 KVDIKD 133 (221)
T ss_dssp CTTSSS
T ss_pred CCcccc
Confidence 999863
No 149
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=97.87 E-value=2.7e-05 Score=88.28 Aligned_cols=65 Identities=15% Similarity=0.148 Sum_probs=42.0
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcC--cHHHHHHHHHhCcCCCeEEEEec
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWS--NATTRRVVMQIDPELKRTIIVST 209 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~--~~~~l~lar~~Dp~g~RTIgVlT 209 (759)
..++|+||||.. + ....+..+++..+.+||+|.+...+. +.+.+.+++. .|.+.|.|+|
T Consensus 73 ~~i~iiDtPGh~---------------~-~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~---~~ip~IvviN 133 (482)
T 1wb1_A 73 YRITLVDAPGHA---------------D-LIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDH---FNIPIIVVIT 133 (482)
T ss_dssp EEEEECCCSSHH---------------H-HHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHH---TTCCBCEEEE
T ss_pred EEEEEEECCChH---------------H-HHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHH---cCCCEEEEEE
Confidence 479999999961 1 22445567888887777765433222 2223444444 4677899999
Q ss_pred CCCccc
Q 004351 210 KLDTKI 215 (759)
Q Consensus 210 K~D~~~ 215 (759)
|+|+..
T Consensus 134 K~Dl~~ 139 (482)
T 1wb1_A 134 KSDNAG 139 (482)
T ss_dssp CTTSSC
T ss_pred CCCccc
Confidence 999963
No 150
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=97.86 E-value=1.5e-05 Score=87.62 Aligned_cols=39 Identities=26% Similarity=0.239 Sum_probs=29.8
Q ss_pred CCEEEEEeccCCchHHHHHHHhCCccceecCccccccce
Q 004351 24 APAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPI 62 (759)
Q Consensus 24 lPqIVVVG~QSsGKSSLLEAL~G~~fp~~g~g~cTR~P~ 62 (759)
.++|++||-.|+|||||+|+|+|......+--.|||-|+
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~ 110 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTV 110 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEE
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeee
Confidence 478999999999999999999998754333334555544
No 151
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=97.86 E-value=4.2e-05 Score=87.69 Aligned_cols=73 Identities=14% Similarity=0.203 Sum_probs=50.1
Q ss_pred EEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHHHHHhCcCCCeE
Q 004351 125 KVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRT 204 (759)
Q Consensus 125 eI~~p~~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~RT 204 (759)
.+.+. ...++||||||...-. ..+..|+...+.+|++|.+... .......+.+.+...+...
T Consensus 76 ~~~~~-~~~i~liDTPG~~df~----------------~~~~~~l~~aD~~IlVvDa~~g-~~~~t~~~~~~~~~~~ipi 137 (529)
T 2h5e_A 76 QFPYH-DCLVNLLDTPGHEDFS----------------EDTYRTLTAVDCCLMVIDAAKG-VEDRTRKLMEVTRLRDTPI 137 (529)
T ss_dssp EEEET-TEEEEEECCCCSTTCC----------------HHHHHGGGGCSEEEEEEETTTC-SCHHHHHHHHHHTTTTCCE
T ss_pred EEEEC-CeEEEEEECCCChhHH----------------HHHHHHHHHCCEEEEEEeCCcc-chHHHHHHHHHHHHcCCCE
Confidence 44443 3579999999984321 3456788888887777654432 3344566666666678889
Q ss_pred EEEecCCCccc
Q 004351 205 IIVSTKLDTKI 215 (759)
Q Consensus 205 IgVlTK~D~~~ 215 (759)
|.|+||+|+..
T Consensus 138 ivviNK~Dl~~ 148 (529)
T 2h5e_A 138 LTFMNKLDRDI 148 (529)
T ss_dssp EEEEECTTSCC
T ss_pred EEEEcCcCCcc
Confidence 99999999963
No 152
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=97.85 E-value=1.3e-05 Score=90.77 Aligned_cols=83 Identities=17% Similarity=0.249 Sum_probs=49.0
Q ss_pred ccccceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCC-c-----CcHH
Q 004351 116 QFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSD-W-----SNAT 189 (759)
Q Consensus 116 ~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D-~-----~~~~ 189 (759)
+.+-+.....+..+. ..++|+||||... ...++..|++..+.+||+|.+... . ....
T Consensus 96 GiTi~~~~~~~~~~~-~~~~iiDTPG~~~----------------f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~q 158 (483)
T 3p26_A 96 GVTVSICTSHFSTHR-ANFTIVDAPGHRD----------------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQ 158 (483)
T ss_dssp CSSCCCCEEEEECSS-CEEEEECCCCCGG----------------GHHHHHHHHTTCSEEEEEEECCC------CCCCHH
T ss_pred CcceEeeeEEEecCC-ceEEEEECCCcHH----------------HHHHHHHhhhhCCEEEEEEECCCCccccccchhhh
Confidence 344444455565543 5799999999832 124556788888888877754321 1 1122
Q ss_pred HHHHHHHhCcCC-CeEEEEecCCCccc
Q 004351 190 TRRVVMQIDPEL-KRTIIVSTKLDTKI 215 (759)
Q Consensus 190 ~l~lar~~Dp~g-~RTIgVlTK~D~~~ 215 (759)
..+.+..+...+ .+.|.|+||+|+..
T Consensus 159 t~e~~~~~~~~~~~~iIvviNK~Dl~~ 185 (483)
T 3p26_A 159 TKEHMLLASSLGIHNLIIAMNKMDNVD 185 (483)
T ss_dssp HHHHHHHHHHTTCCCEEEEEECGGGGT
T ss_pred HHHHHHHHHHcCCCcEEEEEECcCccc
Confidence 333333222234 35999999999863
No 153
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=97.85 E-value=1.9e-05 Score=84.97 Aligned_cols=66 Identities=17% Similarity=0.202 Sum_probs=39.3
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcH-H----HHHHHHHhCcCCCeEEEE
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNA-T----TRRVVMQIDPELKRTIIV 207 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~-~----~l~lar~~Dp~g~RTIgV 207 (759)
.++|+||||-.. ...+...|++..+.+|+++... +...- . ...+.+.....+...|.|
T Consensus 210 ~l~i~Dt~G~~~----------------~~~~~~~~~~~ad~vilV~D~~-~~~s~~~~~~~~~~~~~~~~~~~~piilV 272 (329)
T 3o47_A 210 SFTVWDVGGQDK----------------IRPLWRHYFQNTQGLIFVVDSN-DRERVNEAREELMRMLAEDELRDAVLLVF 272 (329)
T ss_dssp EEEEEECC---------------------CCSHHHHHTTEEEEEEEEETT-CSSSHHHHHHHHHHHHTCGGGTTCEEEEE
T ss_pred EEEEEECCCCHh----------------HHHHHHHHhccCCEEEEEEECC-chHHHHHHHHHHHHHHhhhccCCCeEEEE
Confidence 578999999321 2245677888888777766432 22221 1 122333333346789999
Q ss_pred ecCCCccc
Q 004351 208 STKLDTKI 215 (759)
Q Consensus 208 lTK~D~~~ 215 (759)
+||.|+..
T Consensus 273 ~NK~Dl~~ 280 (329)
T 3o47_A 273 ANKQDLPN 280 (329)
T ss_dssp EECTTSTT
T ss_pred EECccCCc
Confidence 99999863
No 154
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=97.85 E-value=3.8e-05 Score=81.72 Aligned_cols=71 Identities=11% Similarity=0.053 Sum_probs=43.0
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHH----HHHHH---HHhCcCCCeE
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNAT----TRRVV---MQIDPELKRT 204 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~----~l~la---r~~Dp~g~RT 204 (759)
..+.|+||||...- .......+...|+++.+.+|+++-.. +...-. +.... +...| +...
T Consensus 52 ~~l~i~Dt~G~~~~-----------~~~~~~~~~~~~~~~ad~vi~V~D~t-~~~s~~~l~~~~~~l~~l~~~~~-~~pi 118 (307)
T 3r7w_A 52 MTLNLWDCGGQDVF-----------MENYFTKQKDHIFQMVQVLIHVFDVE-STEVLKDIEIFAKALKQLRKYSP-DAKI 118 (307)
T ss_dssp EEEEEEEECCSHHH-----------HHHHHTTTHHHHHTTCSEEEEEEETT-CSCHHHHHHHHHHHHHHHHHHCT-TCEE
T ss_pred eEEEEEECCCcHHH-----------hhhhhhhHHHHHhccCCEEEEEEECC-ChhhHHHHHHHHHHHHHHHHhCC-CCeE
Confidence 46889999996321 01112467788888888777766433 222211 12222 33333 5889
Q ss_pred EEEecCCCccc
Q 004351 205 IIVSTKLDTKI 215 (759)
Q Consensus 205 IgVlTK~D~~~ 215 (759)
+.|+||.|+..
T Consensus 119 ilv~NK~Dl~~ 129 (307)
T 3r7w_A 119 FVLLHKMDLVQ 129 (307)
T ss_dssp EEEEECGGGSC
T ss_pred EEEEecccccc
Confidence 99999999864
No 155
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=97.84 E-value=3.2e-05 Score=90.15 Aligned_cols=27 Identities=30% Similarity=0.380 Sum_probs=24.0
Q ss_pred CCCCEEEEEeccCCchHHHHHHHhCCc
Q 004351 22 FDAPAVLVVGHQTDGKSALVEALMGFQ 48 (759)
Q Consensus 22 i~lPqIVVVG~QSsGKSSLLEAL~G~~ 48 (759)
-+...|++||+.++|||||+++|++-.
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~ 191 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDL 191 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhc
Confidence 346689999999999999999999874
No 156
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=97.83 E-value=1.3e-05 Score=79.67 Aligned_cols=26 Identities=31% Similarity=0.406 Sum_probs=24.1
Q ss_pred CEEEEEeccCCchHHHHHHHhCCccc
Q 004351 25 PAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
..|+|+|+.++|||||+++|++-.|+
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~~~~ 54 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKDCFP 54 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 47999999999999999999998875
No 157
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=97.81 E-value=6.6e-05 Score=76.01 Aligned_cols=67 Identities=16% Similarity=0.146 Sum_probs=43.9
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeeccc--CCcC-cHHHHHHHHHhCcCCCeEEEEec
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDC--SDWS-NATTRRVVMQIDPELKRTIIVST 209 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~--~D~~-~~~~l~lar~~Dp~g~RTIgVlT 209 (759)
.|.|.||+|--+ .+.|...|.+..+.+|++..-. ..+. -..++..++...+.....|.|.|
T Consensus 63 ~l~iwDtaGqe~----------------~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgN 126 (216)
T 4dkx_A 63 RLQLWDTAGLER----------------FRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGN 126 (216)
T ss_dssp EEEEECCSCTTT----------------CGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEE
T ss_pred EEEEEECCCchh----------------hhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEee
Confidence 467899999632 1257788999999888876422 1111 12345555555445678999999
Q ss_pred CCCccc
Q 004351 210 KLDTKI 215 (759)
Q Consensus 210 K~D~~~ 215 (759)
|.|+..
T Consensus 127 K~Dl~~ 132 (216)
T 4dkx_A 127 KTDLAD 132 (216)
T ss_dssp CTTCGG
T ss_pred ccchHh
Confidence 999854
No 158
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=97.80 E-value=1.9e-05 Score=78.96 Aligned_cols=65 Identities=17% Similarity=0.307 Sum_probs=42.6
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCC--cCc--HHHHHHHHHhCcCCCeEEEEe
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSD--WSN--ATTRRVVMQIDPELKRTIIVS 208 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D--~~~--~~~l~lar~~Dp~g~RTIgVl 208 (759)
.+.|+|+||.... ..+...|+++.+.+|+++...+. +.+ ..++..++...+ +...|.|.
T Consensus 76 ~l~i~Dt~G~~~~----------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~ 138 (214)
T 3q3j_B 76 ELSLWDTSGSPYY----------------DNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCP-STRVLLIG 138 (214)
T ss_dssp EEEEEEECCSGGG----------------TTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCT-TSEEEEEE
T ss_pred EEEEEECCCCHhH----------------HHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCC-CCCEEEEE
Confidence 4788999996432 13455688888888777643321 111 234555666544 57899999
Q ss_pred cCCCcc
Q 004351 209 TKLDTK 214 (759)
Q Consensus 209 TK~D~~ 214 (759)
||.|+.
T Consensus 139 nK~Dl~ 144 (214)
T 3q3j_B 139 CKTDLR 144 (214)
T ss_dssp ECGGGG
T ss_pred EChhhc
Confidence 999985
No 159
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=97.79 E-value=9.8e-05 Score=84.46 Aligned_cols=30 Identities=27% Similarity=0.533 Sum_probs=23.2
Q ss_pred CCCCCEEEEEeccCCchHHHHHHHhCCccc
Q 004351 21 PFDAPAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 21 ~i~lPqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
...-..|++||+.++|||||+++|+|-.|.
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~ 67 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFD 67 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC----
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 344568999999999999999999998875
No 160
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.78 E-value=6.3e-05 Score=83.16 Aligned_cols=26 Identities=35% Similarity=0.516 Sum_probs=23.1
Q ss_pred CCCEEEEEeccCCchHHHHHHHhCCc
Q 004351 23 DAPAVLVVGHQTDGKSALVEALMGFQ 48 (759)
Q Consensus 23 ~lPqIVVVG~QSsGKSSLLEAL~G~~ 48 (759)
+...|+++|+.++|||||+++|+|..
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~ 32 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVW 32 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCC
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCc
Confidence 44689999999999999999999864
No 161
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=97.78 E-value=6.9e-06 Score=93.51 Aligned_cols=28 Identities=32% Similarity=0.576 Sum_probs=24.7
Q ss_pred CCCEEEEEeccCCchHHHHHHHhCCccc
Q 004351 23 DAPAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 23 ~lPqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
..|.|+++|+.++|||||+++|.+-.+.
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~ 30 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVA 30 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCc
Confidence 3589999999999999999999886654
No 162
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=97.76 E-value=4.7e-05 Score=84.08 Aligned_cols=75 Identities=13% Similarity=0.081 Sum_probs=45.6
Q ss_pred EEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHHHHHhCcCC
Q 004351 122 IIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPEL 201 (759)
Q Consensus 122 I~leI~~p~~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g 201 (759)
..+.+... ...++|+||||...- ......|++..+.+||+|.+.... ..+..+....+...+
T Consensus 66 ~~~~~~~~-~~~~~iiDtpG~~~f----------------~~~~~~~~~~aD~~ilVvda~~g~-~~qt~~~l~~~~~~~ 127 (405)
T 2c78_A 66 AHVEYETA-KRHYSHVDCPGHADY----------------IKNMITGAAQMDGAILVVSAADGP-MPQTREHILLARQVG 127 (405)
T ss_dssp EEEEEECS-SCEEEEEECCCSGGG----------------HHHHHHHHTTCSSEEEEEETTTCC-CHHHHHHHHHHHHTT
T ss_pred eeeEeccC-CeEEEEEECCChHHH----------------HHHHHHHHHHCCEEEEEEECCCCC-cHHHHHHHHHHHHcC
Confidence 34444443 357999999997421 134556788888888777543322 223333333333335
Q ss_pred Ce-EEEEecCCCcc
Q 004351 202 KR-TIIVSTKLDTK 214 (759)
Q Consensus 202 ~R-TIgVlTK~D~~ 214 (759)
.+ .|.|+||.|+.
T Consensus 128 ip~iivviNK~Dl~ 141 (405)
T 2c78_A 128 VPYIVVFMNKVDMV 141 (405)
T ss_dssp CCCEEEEEECGGGC
T ss_pred CCEEEEEEECcccc
Confidence 55 78999999996
No 163
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.75 E-value=7.6e-05 Score=83.26 Aligned_cols=65 Identities=12% Similarity=0.134 Sum_probs=41.2
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCc--HHHHHHHHHhCcCCC-eEEEEe
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSN--ATTRRVVMQIDPELK-RTIIVS 208 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~--~~~l~lar~~Dp~g~-RTIgVl 208 (759)
..++|+||||... ....+..|++..+.+||+|.+...+.. .+.+.+++.. +. ..|.|+
T Consensus 104 ~~~~iiDtpGh~~----------------f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~---~~~~iIvvi 164 (434)
T 1zun_B 104 RKFIIADTPGHEQ----------------YTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLL---GIKHIVVAI 164 (434)
T ss_dssp EEEEEEECCCSGG----------------GHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHT---TCCEEEEEE
T ss_pred ceEEEEECCChHH----------------HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc---CCCeEEEEE
Confidence 4699999999632 113344678888888777754432222 2234455554 43 589999
Q ss_pred cCCCccc
Q 004351 209 TKLDTKI 215 (759)
Q Consensus 209 TK~D~~~ 215 (759)
||+|+..
T Consensus 165 NK~Dl~~ 171 (434)
T 1zun_B 165 NKMDLNG 171 (434)
T ss_dssp ECTTTTT
T ss_pred EcCcCCc
Confidence 9999963
No 164
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=97.75 E-value=4.7e-05 Score=86.04 Aligned_cols=26 Identities=23% Similarity=0.226 Sum_probs=23.4
Q ss_pred CEEEEEeccCCchHHHHHHHhCCccc
Q 004351 25 PAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
..|++||+.++||||||++|++-.+.
T Consensus 323 ~ki~lvG~~nvGKSsLl~~l~~~~~~ 348 (497)
T 3lvq_E 323 MRILMLGLDAAGKTTILYKLKLGQSV 348 (497)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSCC
T ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC
Confidence 47999999999999999999987754
No 165
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=97.75 E-value=1.4e-05 Score=92.87 Aligned_cols=28 Identities=32% Similarity=0.592 Sum_probs=24.9
Q ss_pred CCCEEEEEeccCCchHHHHHHHhCCccc
Q 004351 23 DAPAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 23 ~lPqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
..|.|+++|+.++|||||+++|+|-.+.
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~ 31 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVA 31 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCc
Confidence 5689999999999999999999986553
No 166
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=97.74 E-value=1.8e-05 Score=83.56 Aligned_cols=28 Identities=25% Similarity=0.334 Sum_probs=24.9
Q ss_pred CCCEEEEEeccCCchHHHHHHHhCCccc
Q 004351 23 DAPAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 23 ~lPqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
....|+++|+.++|||||++.+++-.|.
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~ 181 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFP 181 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCC
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCC
Confidence 3478999999999999999999987765
No 167
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=97.74 E-value=2e-05 Score=87.29 Aligned_cols=39 Identities=21% Similarity=0.066 Sum_probs=22.5
Q ss_pred EEEEEeccCCchHHHHHHHhCCccceecCccccccceEE
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITL 64 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp~~g~g~cTR~P~~l 64 (759)
+|++||..++|||||+|+|+|.......--.||+-|+.-
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g 40 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVG 40 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--------------CCEE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceE
Confidence 689999999999999999999884322223467666543
No 168
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=97.72 E-value=0.0001 Score=81.42 Aligned_cols=26 Identities=35% Similarity=0.510 Sum_probs=22.8
Q ss_pred CCCEEEEEeccCCchHHHHHHHhCCc
Q 004351 23 DAPAVLVVGHQTDGKSALVEALMGFQ 48 (759)
Q Consensus 23 ~lPqIVVVG~QSsGKSSLLEAL~G~~ 48 (759)
+...|+++|+.++|||||+++|+|..
T Consensus 9 ~~~~I~iiG~~~~GKSTLi~~L~g~~ 34 (410)
T 1kk1_A 9 AEVNIGMVGHVDHGKTTLTKALTGVW 34 (410)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCc
Confidence 34578999999999999999999864
No 169
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=97.71 E-value=4.7e-05 Score=88.51 Aligned_cols=66 Identities=23% Similarity=0.171 Sum_probs=42.5
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHHHHHhCcCCCeEEEEecCC
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKL 211 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~RTIgVlTK~ 211 (759)
..++|+||||...- ...+..+++..+.+||+|.+... ...+...........+...|.|+||+
T Consensus 73 ~~inliDTPGh~dF----------------~~ev~r~l~~aD~aILVVDa~~g-v~~qt~~~~~~a~~~~ipiIvviNKi 135 (600)
T 2ywe_A 73 YKLHLIDTPGHVDF----------------SYEVSRALAACEGALLLIDASQG-IEAQTVANFWKAVEQDLVIIPVINKI 135 (600)
T ss_dssp EEEEEECCCCSGGG----------------HHHHHHHHHTCSEEEEEEETTTB-CCHHHHHHHHHHHHTTCEEEEEEECT
T ss_pred EEEEEEECCCcHhH----------------HHHHHHHHHhCCEEEEEEECCCC-ccHHHHHHHHHHHHCCCCEEEEEecc
Confidence 46889999998531 13456677788877776644332 23333333333333577899999999
Q ss_pred Ccc
Q 004351 212 DTK 214 (759)
Q Consensus 212 D~~ 214 (759)
|+.
T Consensus 136 Dl~ 138 (600)
T 2ywe_A 136 DLP 138 (600)
T ss_dssp TST
T ss_pred Ccc
Confidence 985
No 170
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=97.69 E-value=4.7e-05 Score=90.02 Aligned_cols=67 Identities=22% Similarity=0.171 Sum_probs=43.9
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHHHHHhCcCCCeEEEEecCC
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKL 211 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~RTIgVlTK~ 211 (759)
..+.||||||...-. ..+..|++..+.+|++|.+.. ........+.+.+...+...|.|+||.
T Consensus 75 ~~i~liDTPG~~df~----------------~~~~~~l~~aD~~llVvDa~~-g~~~~~~~~~~~~~~~~~p~ilviNK~ 137 (693)
T 2xex_A 75 HRVNIIDTPGHVDFT----------------VEVERSLRVLDGAVTVLDAQS-GVEPQTETVWRQATTYGVPRIVFVNKM 137 (693)
T ss_dssp EEEEEECCCCCSSCC----------------HHHHHHHHHCSEEEEEEETTT-BSCHHHHHHHHHHHHTTCCEEEEEECT
T ss_pred eeEEEEECcCCcchH----------------HHHHHHHHHCCEEEEEECCCC-CCcHHHHHHHHHHHHcCCCEEEEEECC
Confidence 579999999996421 234566777777776664332 233334444444444578899999999
Q ss_pred Cccc
Q 004351 212 DTKI 215 (759)
Q Consensus 212 D~~~ 215 (759)
|+..
T Consensus 138 Dl~~ 141 (693)
T 2xex_A 138 DKLG 141 (693)
T ss_dssp TSTT
T ss_pred Cccc
Confidence 9964
No 171
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.66 E-value=4.3e-05 Score=74.01 Aligned_cols=23 Identities=30% Similarity=0.576 Sum_probs=21.5
Q ss_pred CEEEEEeccCCchHHHHHHHhCC
Q 004351 25 PAVLVVGHQTDGKSALVEALMGF 47 (759)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~ 47 (759)
..|+++|+.++|||||++.|+|.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 37999999999999999999996
No 172
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=97.65 E-value=5.5e-05 Score=73.60 Aligned_cols=29 Identities=31% Similarity=0.301 Sum_probs=25.2
Q ss_pred CCCCEEEEEeccCCchHHHHHHHhCCccc
Q 004351 22 FDAPAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 22 i~lPqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
..--.|+++|+.++|||||++.+++-.|+
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~~~~~ 46 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLTGTYV 46 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHHSSCC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 34457999999999999999999988876
No 173
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=97.65 E-value=0.00011 Score=81.07 Aligned_cols=66 Identities=14% Similarity=0.048 Sum_probs=41.3
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHHHHHhCcCCCe-EEEEecC
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKR-TIIVSTK 210 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~R-TIgVlTK 210 (759)
..++|+||||... ....+..|++..+.+||+|.+.... ..+..+....+...+.+ .|.|+||
T Consensus 66 ~~~~iiDtpG~~~----------------f~~~~~~~~~~aD~~ilVvda~~g~-~~qt~e~l~~~~~~~vp~iivviNK 128 (397)
T 1d2e_A 66 RHYAHTDCPGHAD----------------YVKNMITGTAPLDGCILVVAANDGP-MPQTREHLLLARQIGVEHVVVYVNK 128 (397)
T ss_dssp CEEEEEECSSHHH----------------HHHHHHHTSSCCSEEEEEEETTTCS-CHHHHHHHHHHHHTTCCCEEEEEEC
T ss_pred eEEEEEECCChHH----------------HHHHHHhhHhhCCEEEEEEECCCCC-CHHHHHHHHHHHHcCCCeEEEEEEC
Confidence 5799999999721 1234567788888777776543322 22333332333334556 5899999
Q ss_pred CCcc
Q 004351 211 LDTK 214 (759)
Q Consensus 211 ~D~~ 214 (759)
+|+.
T Consensus 129 ~Dl~ 132 (397)
T 1d2e_A 129 ADAV 132 (397)
T ss_dssp GGGC
T ss_pred cccC
Confidence 9996
No 174
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.62 E-value=9.8e-05 Score=72.40 Aligned_cols=27 Identities=30% Similarity=0.431 Sum_probs=24.8
Q ss_pred CCEEEEEeccCCchHHHHHHHhCCccc
Q 004351 24 APAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 24 lPqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
...|+++|+.++||||||+.|+|..|+
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~ 31 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFN 31 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCC
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCC
Confidence 357999999999999999999999876
No 175
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=97.58 E-value=0.00021 Score=75.85 Aligned_cols=25 Identities=32% Similarity=0.533 Sum_probs=20.2
Q ss_pred EEEEEeccCCchHHHHHHHhCCc-cc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQ-FN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~-fp 50 (759)
.|+|||+.|+||||||+.|.|.. +|
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g~~~~~ 45 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFLTDLYP 45 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC-----
T ss_pred EEEEECCCCCCHHHHHHHHhCCCccC
Confidence 57999999999999999999984 55
No 176
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=97.56 E-value=0.00015 Score=80.93 Aligned_cols=72 Identities=21% Similarity=0.205 Sum_probs=44.8
Q ss_pred EEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCC-------cCcHH--HHHHHH
Q 004351 125 KVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSD-------WSNAT--TRRVVM 195 (759)
Q Consensus 125 eI~~p~~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D-------~~~~~--~l~lar 195 (759)
.+.++. ..++|+||||... ....+..|++..+.+||+|.+... |..+. .+.+++
T Consensus 78 ~~~~~~-~~~~iiDtpG~~~----------------f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~ 140 (435)
T 1jny_A 78 RFETKK-YFFTIIDAPGHRD----------------FVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAK 140 (435)
T ss_dssp EEECSS-CEEEECCCSSSTT----------------HHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHH
T ss_pred EEecCC-eEEEEEECCCcHH----------------HHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHH
Confidence 444443 4799999999732 113456688888888877754433 33332 233344
Q ss_pred HhCcCCCeEEEEecCCCccc
Q 004351 196 QIDPELKRTIIVSTKLDTKI 215 (759)
Q Consensus 196 ~~Dp~g~RTIgVlTK~D~~~ 215 (759)
.+. ..+.|.|+||+|+..
T Consensus 141 ~~~--~~~iivviNK~Dl~~ 158 (435)
T 1jny_A 141 TMG--LDQLIVAVNKMDLTE 158 (435)
T ss_dssp HTT--CTTCEEEEECGGGSS
T ss_pred HcC--CCeEEEEEEcccCCC
Confidence 432 135889999999964
No 177
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=97.56 E-value=7.6e-05 Score=83.98 Aligned_cols=25 Identities=32% Similarity=0.388 Sum_probs=22.3
Q ss_pred CCCEEEEEeccCCchHHHHHHHhCC
Q 004351 23 DAPAVLVVGHQTDGKSALVEALMGF 47 (759)
Q Consensus 23 ~lPqIVVVG~QSsGKSSLLEAL~G~ 47 (759)
+...|+++|+.++|||||+++|++.
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~ 30 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYK 30 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHH
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999974
No 178
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.55 E-value=1.6e-05 Score=87.02 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=22.0
Q ss_pred CEEEEEeccCCchHHHHHHHhCCc
Q 004351 25 PAVLVVGHQTDGKSALVEALMGFQ 48 (759)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~~ 48 (759)
..|++||..++|||||+|+|+|..
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~ 186 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEA 186 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEcCCCCchHHHHHHHHhhc
Confidence 479999999999999999999873
No 179
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.53 E-value=0.00015 Score=70.98 Aligned_cols=26 Identities=31% Similarity=0.462 Sum_probs=24.4
Q ss_pred CEEEEEeccCCchHHHHHHHhCCccc
Q 004351 25 PAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
..|+++|+.++||||||+.|+|..++
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~~~ 55 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNEFN 55 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCC
Confidence 47999999999999999999999887
No 180
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.51 E-value=3.5e-05 Score=84.37 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=22.2
Q ss_pred CEEEEEeccCCchHHHHHHHhCCc
Q 004351 25 PAVLVVGHQTDGKSALVEALMGFQ 48 (759)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~~ 48 (759)
..|+++|..++|||||+|+|+|..
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~ 184 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEF 184 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhh
Confidence 479999999999999999999875
No 181
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=97.50 E-value=0.00013 Score=88.13 Aligned_cols=66 Identities=21% Similarity=0.261 Sum_probs=45.0
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHHHHHhCcCCCeEEEEecCC
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKL 211 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~RTIgVlTK~ 211 (759)
..+.||||||...-. ..+..|++..+.+|++|... +....+...+.+.+...+...|.|+||+
T Consensus 98 ~~i~liDTPG~~df~----------------~~~~~~l~~aD~ailVvDa~-~g~~~qt~~~~~~~~~~~~p~ilviNK~ 160 (842)
T 1n0u_A 98 FLINLIDSPGHVDFS----------------SEVTAALRVTDGALVVVDTI-EGVCVQTETVLRQALGERIKPVVVINKV 160 (842)
T ss_dssp EEEEEECCCCCCSSC----------------HHHHHHHHTCSEEEEEEETT-TBSCHHHHHHHHHHHHTTCEEEEEEECH
T ss_pred ceEEEEECcCchhhH----------------HHHHHHHHhCCEEEEEEeCC-CCCCHHHHHHHHHHHHcCCCeEEEEECC
Confidence 368999999986521 34667888888777766433 3333344444455545677899999999
Q ss_pred Ccc
Q 004351 212 DTK 214 (759)
Q Consensus 212 D~~ 214 (759)
|+.
T Consensus 161 D~~ 163 (842)
T 1n0u_A 161 DRA 163 (842)
T ss_dssp HHH
T ss_pred Ccc
Confidence 986
No 182
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=97.50 E-value=9.8e-05 Score=85.86 Aligned_cols=67 Identities=19% Similarity=0.117 Sum_probs=42.3
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHHHHHhCcCCCeEEEEecCC
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKL 211 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~RTIgVlTK~ 211 (759)
..++|+||||...- ...+..+++..+.+||+|.+......+. ..........+...|.|+||.
T Consensus 71 ~~l~liDTPGh~dF----------------~~ev~~~l~~aD~aILVVDa~~gv~~qt-~~~~~~~~~~~ipiIvViNKi 133 (599)
T 3cb4_D 71 YQLNFIDTPGHVDF----------------SYEVSRSLAACEGALLVVDAGQGVEAQT-LANCYTAMEMDLEVVPVLNKI 133 (599)
T ss_dssp EEEEEEECCCCGGG----------------HHHHHHHHHHCSEEEEEEETTTCCCTHH-HHHHHHHHHTTCEEEEEEECT
T ss_pred EEEEEEECCCchHH----------------HHHHHHHHHHCCEEEEEEECCCCCCHHH-HHHHHHHHHCCCCEEEeeecc
Confidence 46899999998431 1346677777887777775443222222 222222223467899999999
Q ss_pred Cccc
Q 004351 212 DTKI 215 (759)
Q Consensus 212 D~~~ 215 (759)
|+..
T Consensus 134 Dl~~ 137 (599)
T 3cb4_D 134 DLPA 137 (599)
T ss_dssp TSTT
T ss_pred Cccc
Confidence 9953
No 183
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=97.50 E-value=0.00027 Score=83.73 Aligned_cols=67 Identities=19% Similarity=0.167 Sum_probs=45.1
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHHHHHhCcCCCeEEEEecCC
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKL 211 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~RTIgVlTK~ 211 (759)
..+.||||||...- ...+..|++..+.+|++|.+... .......+.+.+...+...|.|+||+
T Consensus 82 ~~i~liDTPG~~df----------------~~~~~~~l~~aD~aIlVvDa~~g-v~~qt~~~~~~~~~~~ip~ilviNKi 144 (704)
T 2rdo_7 82 HRINIIDTPGHVDF----------------TIEVERSMRVLDGAVMVYCAVGG-VQPQSETVWRQANKYKVPRIAFVNKM 144 (704)
T ss_pred eeEEEEeCCCccch----------------HHHHHHHHHHCCEEEEEEeCCCC-CcHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 57999999998431 13456677778877776654432 23334444455555677899999999
Q ss_pred Cccc
Q 004351 212 DTKI 215 (759)
Q Consensus 212 D~~~ 215 (759)
|+..
T Consensus 145 D~~~ 148 (704)
T 2rdo_7 145 DRMG 148 (704)
T ss_pred Cccc
Confidence 9864
No 184
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.43 E-value=0.0022 Score=71.74 Aligned_cols=70 Identities=17% Similarity=0.256 Sum_probs=44.6
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHHHHHhCcCCCeEEEEecCC
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKL 211 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~RTIgVlTK~ 211 (759)
.++.||||||..... ......+..+ ...+ .++.++|++.+.. .+.+...++.+++...-+..|+||.
T Consensus 183 ~DvVIIDTaGrl~~d--------~~lm~el~~i-~~~~-~pd~vlLVvDA~~---gq~a~~~a~~f~~~~~i~gVIlTKl 249 (443)
T 3dm5_A 183 VDIIIVDTAGRHKED--------KALIEEMKQI-SNVI-HPHEVILVIDGTI---GQQAYNQALAFKEATPIGSIIVTKL 249 (443)
T ss_dssp CSEEEEECCCCSSCC--------HHHHHHHHHH-HHHH-CCSEEEEEEEGGG---GGGHHHHHHHHHHSCTTEEEEEECC
T ss_pred CCEEEEECCCcccch--------HHHHHHHHHH-HHhh-cCceEEEEEeCCC---chhHHHHHHHHHhhCCCeEEEEECC
Confidence 678999999986532 1223333333 2233 4565555554332 3556777888887777788999999
Q ss_pred Ccc
Q 004351 212 DTK 214 (759)
Q Consensus 212 D~~ 214 (759)
|..
T Consensus 250 D~~ 252 (443)
T 3dm5_A 250 DGS 252 (443)
T ss_dssp SSC
T ss_pred CCc
Confidence 985
No 185
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=97.41 E-value=0.00044 Score=69.55 Aligned_cols=27 Identities=30% Similarity=0.389 Sum_probs=23.3
Q ss_pred CCCEEEEEeccCCchHHHHHHHhCCcc
Q 004351 23 DAPAVLVVGHQTDGKSALVEALMGFQF 49 (759)
Q Consensus 23 ~lPqIVVVG~QSsGKSSLLEAL~G~~f 49 (759)
....||+||+.++|||||++.++|...
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~ 62 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHD 62 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCC
Confidence 346799999999999999999998553
No 186
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=97.41 E-value=0.0002 Score=84.70 Aligned_cols=67 Identities=21% Similarity=0.210 Sum_probs=43.9
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHHHHHhCcCCCeEEEEecCC
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKL 211 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~RTIgVlTK~ 211 (759)
..++||||||...- ...+..|++..+.+|++|.+.. ........+.+.+...+...|.|+||.
T Consensus 77 ~~i~liDTPG~~df----------------~~~~~~~l~~aD~~ilVvDa~~-g~~~~t~~~~~~~~~~~~p~ivviNKi 139 (691)
T 1dar_A 77 HRINIIDTPGHVDF----------------TIEVERSMRVLDGAIVVFDSSQ-GVEPQSETVWRQAEKYKVPRIAFANKM 139 (691)
T ss_dssp EEEEEECCCSSTTC----------------HHHHHHHHHHCSEEEEEEETTT-CSCHHHHHHHHHHHHTTCCEEEEEECT
T ss_pred eEEEEEECcCccch----------------HHHHHHHHHHCCEEEEEEECCC-CcchhhHHHHHHHHHcCCCEEEEEECC
Confidence 57999999998431 1355677777887777665432 223333344334444577899999999
Q ss_pred Cccc
Q 004351 212 DTKI 215 (759)
Q Consensus 212 D~~~ 215 (759)
|+..
T Consensus 140 D~~~ 143 (691)
T 1dar_A 140 DKTG 143 (691)
T ss_dssp TSTT
T ss_pred Cccc
Confidence 9963
No 187
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=97.39 E-value=1.7e-05 Score=92.14 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=22.0
Q ss_pred CCEEEEEeccCCchHHHHHHHhCCc
Q 004351 24 APAVLVVGHQTDGKSALVEALMGFQ 48 (759)
Q Consensus 24 lPqIVVVG~QSsGKSSLLEAL~G~~ 48 (759)
...|++||+.++|||||+++|++..
T Consensus 177 ~~~I~iiG~~d~GKSTLi~~Ll~~~ 201 (592)
T 3mca_A 177 VVHLVVTGHVDSGKSTMLGRIMFEL 201 (592)
T ss_dssp EEEEEEECCSSSTHHHHHHHHHHHH
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3469999999999999999998754
No 188
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.39 E-value=0.00098 Score=75.90 Aligned_cols=27 Identities=26% Similarity=0.481 Sum_probs=23.5
Q ss_pred EEEEEeccCCchHHHHHHHh------CCcccee
Q 004351 26 AVLVVGHQTDGKSALVEALM------GFQFNHV 52 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~------G~~fp~~ 52 (759)
.|+++|.+++||||+++.|+ |.++..+
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllV 135 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLI 135 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 68999999999999999999 7775544
No 189
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.28 E-value=0.00046 Score=76.75 Aligned_cols=71 Identities=17% Similarity=0.263 Sum_probs=42.6
Q ss_pred cCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHH-hcCccceeEeecccCCcCcHHHHHHHHHhCcCCCeEEEE
Q 004351 129 KYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAK-MQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIV 207 (759)
Q Consensus 129 p~~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Y-i~~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~RTIgV 207 (759)
+..++++++|+||+.... . .+.+++... +...+.+ +.+. ... .....+.+++.+-..+.+.+.|
T Consensus 117 ~~~~~ltv~D~~g~~~~~---~---------~~~~~L~~~~L~~~~~~-~~lS-~G~-~~kqrv~la~aL~~~~~p~~lV 181 (413)
T 1tq4_A 117 PNIPNVVFWDLPGIGSTN---F---------PPDTYLEKMKFYEYDFF-IIIS-ATR-FKKNDIDIAKAISMMKKEFYFV 181 (413)
T ss_dssp SSCTTEEEEECCCGGGSS---C---------CHHHHHHHTTGGGCSEE-EEEE-SSC-CCHHHHHHHHHHHHTTCEEEEE
T ss_pred cccCCeeehHhhcccchH---H---------HHHHHHHHcCCCccCCe-EEeC-CCC-ccHHHHHHHHHHHhcCCCeEEE
Confidence 345799999999997521 1 011222221 2222222 2333 222 2455667787777778999999
Q ss_pred ecCCCcc
Q 004351 208 STKLDTK 214 (759)
Q Consensus 208 lTK~D~~ 214 (759)
+||+|++
T Consensus 182 ~tkpdll 188 (413)
T 1tq4_A 182 RTKVDSD 188 (413)
T ss_dssp ECCHHHH
T ss_pred EecCccc
Confidence 9999986
No 190
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.27 E-value=0.00038 Score=75.53 Aligned_cols=24 Identities=38% Similarity=0.320 Sum_probs=22.0
Q ss_pred CCCEEEEEeccCCchHHHHHHHhC
Q 004351 23 DAPAVLVVGHQTDGKSALVEALMG 46 (759)
Q Consensus 23 ~lPqIVVVG~QSsGKSSLLEAL~G 46 (759)
..+.|+++|..|+|||||+++|++
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999974
No 191
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=97.25 E-value=0.00017 Score=81.36 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=21.0
Q ss_pred CCEEEEEeccCCchHHHHHHHhC
Q 004351 24 APAVLVVGHQTDGKSALVEALMG 46 (759)
Q Consensus 24 lPqIVVVG~QSsGKSSLLEAL~G 46 (759)
...|+++|+.++|||||+++|++
T Consensus 43 ~~~i~iiG~vd~GKSTLi~~Ll~ 65 (467)
T 1r5b_A 43 HVNIVFIGHVDAGKSTLGGNILF 65 (467)
T ss_dssp EEEEEEEECGGGTHHHHHHHHHH
T ss_pred eeEEEEEECCCCCHHHHHHHHHH
Confidence 45799999999999999999975
No 192
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=97.21 E-value=0.0004 Score=85.52 Aligned_cols=66 Identities=14% Similarity=0.030 Sum_probs=42.8
Q ss_pred CCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCC--cCcHHHHHHHHHhCcCCCe-EEEE
Q 004351 131 CPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSD--WSNATTRRVVMQIDPELKR-TIIV 207 (759)
Q Consensus 131 ~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D--~~~~~~l~lar~~Dp~g~R-TIgV 207 (759)
...++|+||||... ...++..|++..+.+||+|.+... ..+.+.+.+++.. |.. .|.|
T Consensus 358 ~~kI~IIDTPGHed----------------F~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~l---gIP~IIVV 418 (1289)
T 3avx_A 358 TRHYAHVDCPGHAD----------------YVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQV---GVPYIIVF 418 (1289)
T ss_dssp SCEEEEEECCCHHH----------------HHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHH---TCSCEEEE
T ss_pred CEEEEEEECCChHH----------------HHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHc---CCCeEEEE
Confidence 35799999999721 124455688888888877754321 2233344555543 555 6899
Q ss_pred ecCCCccc
Q 004351 208 STKLDTKI 215 (759)
Q Consensus 208 lTK~D~~~ 215 (759)
+||+|+..
T Consensus 419 INKiDLv~ 426 (1289)
T 3avx_A 419 LNKCDMVD 426 (1289)
T ss_dssp EECCTTCC
T ss_pred Eeeccccc
Confidence 99999963
No 193
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.11 E-value=0.0012 Score=77.77 Aligned_cols=66 Identities=17% Similarity=0.185 Sum_probs=43.1
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHHHHHhCcCCCeEEEEecCC
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKL 211 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~RTIgVlTK~ 211 (759)
..+.|+||||...- ...+..|++..+..++++.+.. -.......+.+.+...+...|.|+||+
T Consensus 74 ~~~nliDTpG~~~f----------------~~~~~~~l~~ad~~ilVvD~~~-g~~~qt~~~~~~~~~~~ip~ilv~NKi 136 (665)
T 2dy1_A 74 HRVFLLDAPGYGDF----------------VGEIRGALEAADAALVAVSAEA-GVQVGTERAWTVAERLGLPRMVVVTKL 136 (665)
T ss_dssp EEEEEEECCCSGGG----------------HHHHHHHHHHCSEEEEEEETTT-CSCHHHHHHHHHHHHTTCCEEEEEECG
T ss_pred EEEEEEeCCCccch----------------HHHHHHHHhhcCcEEEEEcCCc-ccchhHHHHHHHHHHccCCEEEEecCC
Confidence 47899999997431 1456677777777777665332 222333344444444578899999999
Q ss_pred Ccc
Q 004351 212 DTK 214 (759)
Q Consensus 212 D~~ 214 (759)
|+.
T Consensus 137 D~~ 139 (665)
T 2dy1_A 137 DKG 139 (665)
T ss_dssp GGC
T ss_pred chh
Confidence 986
No 194
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=97.08 E-value=0.00075 Score=73.90 Aligned_cols=38 Identities=29% Similarity=0.100 Sum_probs=28.2
Q ss_pred CEEEEEeccCCchHHHHHHHhCCccceecCccccccce
Q 004351 25 PAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPI 62 (759)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~~fp~~g~g~cTR~P~ 62 (759)
..|++||..|+|||||+++|+|...+...-..||..|.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn 39 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKN 39 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTT
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccc
Confidence 47899999999999999999997633222234565554
No 195
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=97.06 E-value=0.00072 Score=66.12 Aligned_cols=25 Identities=32% Similarity=0.480 Sum_probs=22.3
Q ss_pred CCEEEEEeccCCchHHHHHHHhCCc
Q 004351 24 APAVLVVGHQTDGKSALVEALMGFQ 48 (759)
Q Consensus 24 lPqIVVVG~QSsGKSSLLEAL~G~~ 48 (759)
...|++||+.++|||||++.++|..
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~~ 30 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGVH 30 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCc
Confidence 4689999999999999999999743
No 196
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.02 E-value=0.00069 Score=74.87 Aligned_cols=37 Identities=24% Similarity=0.145 Sum_probs=22.0
Q ss_pred CEEEEEeccCCchHHHHHHHhCCccceecCccccccc
Q 004351 25 PAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRP 61 (759)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~~fp~~g~g~cTR~P 61 (759)
..|++||..++|||||+|+|+|..+....--.||.-|
T Consensus 23 ~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p 59 (396)
T 2ohf_A 23 LKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDP 59 (396)
T ss_dssp CCEEEECCSSSSHHHHHHHHHC-------------CC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCc
Confidence 5799999999999999999999876422222344444
No 197
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.98 E-value=0.00051 Score=75.08 Aligned_cols=26 Identities=31% Similarity=0.270 Sum_probs=22.5
Q ss_pred CEEEEEeccCCchHHHHHHHhCCccc
Q 004351 25 PAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
..|++||..++|||||+|+|+|-.+.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~ 28 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIE 28 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC--
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCc
Confidence 47999999999999999999998754
No 198
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.97 E-value=0.0056 Score=62.33 Aligned_cols=32 Identities=22% Similarity=0.349 Sum_probs=25.9
Q ss_pred CCCCCEEEEEeccCCchHHHHHHHh-----CCcccee
Q 004351 21 PFDAPAVLVVGHQTDGKSALVEALM-----GFQFNHV 52 (759)
Q Consensus 21 ~i~lPqIVVVG~QSsGKSSLLEAL~-----G~~fp~~ 52 (759)
.-..+-++++|..|+||||+++.|. |.++..+
T Consensus 11 ~~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vv 47 (262)
T 1yrb_A 11 GMASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYV 47 (262)
T ss_dssp TCCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEE
T ss_pred CcceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEE
Confidence 3456788999999999999999998 7665433
No 199
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.91 E-value=0.00073 Score=75.55 Aligned_cols=73 Identities=12% Similarity=0.187 Sum_probs=42.8
Q ss_pred CCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHHHHHhCcCCCeEEEEecC
Q 004351 131 CPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTK 210 (759)
Q Consensus 131 ~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~RTIgVlTK 210 (759)
.+++.||||||....+. + .....++..+.. .+ +++.++|++.+.. .+.+...++.+++...-+..|+||
T Consensus 179 ~~DvvIIDTaGr~~~~~-d-----~~lm~el~~i~~-~~-~pd~vlLVlDa~~---gq~a~~~a~~f~~~~~~~gVIlTK 247 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYGE-E-----TKLLEEMKEMYD-VL-KPDDVILVIDASI---GQKAYDLASRFHQASPIGSVIITK 247 (433)
T ss_dssp TCSEEEEEECCCSSSCC-T-----THHHHHHHHHHH-HH-CCSEEEEEEEGGG---GGGGHHHHHHHHHHCSSEEEEEEC
T ss_pred CCCEEEEECCCCccccC-C-----HHHHHHHHHHHH-hh-CCcceEEEEeCcc---chHHHHHHHHHhcccCCcEEEEec
Confidence 46888999999755111 1 122333444332 23 4565665554332 234566667666555568899999
Q ss_pred CCcc
Q 004351 211 LDTK 214 (759)
Q Consensus 211 ~D~~ 214 (759)
.|..
T Consensus 248 lD~~ 251 (433)
T 3kl4_A 248 MDGT 251 (433)
T ss_dssp GGGC
T ss_pred cccc
Confidence 9985
No 200
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.53 E-value=0.0021 Score=72.88 Aligned_cols=71 Identities=15% Similarity=0.179 Sum_probs=42.3
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHH---HHHHHHhc-CccceeEeecccCCcCcHHHHHHHHHhCcCCCeEEEEe
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVE---SLVRAKMQ-HREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVS 208 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~---~lv~~Yi~-~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~RTIgVl 208 (759)
++.||||+|..... ...+.... ..++.+.. .|+.++|++.+.. .+.++..++.+.....-|..|+
T Consensus 377 DvVLIDTaGrl~~~--------~~lm~EL~kiv~iar~l~~~~P~evLLvLDatt---Gq~al~~ak~f~~~~~itgvIl 445 (503)
T 2yhs_A 377 DVLIADTAGRLQNK--------SHLMEELKKIVRVMKKLDVEAPHEVMLTIDAST---GQNAVSQAKLFHEAVGLTGITL 445 (503)
T ss_dssp SEEEECCCCSCCCH--------HHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGG---THHHHHHHHHHHHHTCCSEEEE
T ss_pred CEEEEeCCCccchh--------hhHHHHHHHHHHHHHHhccCCCCeeEEEecCcc---cHHHHHHHHHHHhhcCCCEEEE
Confidence 57789999996531 11122222 23332322 3666776654332 3556777777765555688999
Q ss_pred cCCCcc
Q 004351 209 TKLDTK 214 (759)
Q Consensus 209 TK~D~~ 214 (759)
||.|-.
T Consensus 446 TKLD~t 451 (503)
T 2yhs_A 446 TKLDGT 451 (503)
T ss_dssp ECGGGC
T ss_pred EcCCCc
Confidence 999974
No 201
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.39 E-value=0.028 Score=62.78 Aligned_cols=70 Identities=13% Similarity=0.187 Sum_probs=40.6
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHHHHHhCcCCCeEEEEecCC
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKL 211 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~RTIgVlTK~ 211 (759)
.++.||||||..... ......+..+ .++..++.+++++.+.. .+.+...++.+++...-+-.|+||.
T Consensus 184 ~D~VIIDTpG~l~~~--------~~l~~~L~~~--~~~~~p~~vllVvda~~---g~~~~~~~~~f~~~l~i~gvVlnK~ 250 (433)
T 2xxa_A 184 YDVLLVDTAGRLHVD--------EAMMDEIKQV--HASINPVETLFVVDAMT---GQDAANTAKAFNEALPLTGVVLTKV 250 (433)
T ss_dssp CSEEEEECCCCCTTC--------HHHHHHHHHH--HHHSCCSEEEEEEETTB---CTTHHHHHHHHHHHSCCCCEEEECT
T ss_pred CCEEEEECCCccccc--------HHHHHHHHHH--HHhhcCcceeEEeecch---hHHHHHHHHHHhccCCCeEEEEecC
Confidence 478999999976531 1112212121 33446777776664332 2345666777765433355699999
Q ss_pred Ccc
Q 004351 212 DTK 214 (759)
Q Consensus 212 D~~ 214 (759)
|..
T Consensus 251 D~~ 253 (433)
T 2xxa_A 251 DGD 253 (433)
T ss_dssp TSS
T ss_pred CCC
Confidence 985
No 202
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.35 E-value=0.0037 Score=69.82 Aligned_cols=70 Identities=20% Similarity=0.252 Sum_probs=40.6
Q ss_pred CCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHH-HHhcCccceeEeecccCCcCcHHHHHHHHHhCcCC-CeEEEEe
Q 004351 131 CPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVR-AKMQHREFIILCLEDCSDWSNATTRRVVMQIDPEL-KRTIIVS 208 (759)
Q Consensus 131 ~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~-~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g-~RTIgVl 208 (759)
..++.||||||..... ......|.. ..+..++.++++|.+... +.+...++.+.+.. .-+..|+
T Consensus 180 ~~D~vIIDT~G~~~~~-----------~~l~~~l~~i~~~~~~d~vllVvda~~g---~~~~~~~~~~~~~~~~i~gvVl 245 (432)
T 2v3c_C 180 KADVLIIDTAGRHKEE-----------KGLLEEMKQIKEITNPDEIILVIDGTIG---QQAGIQAKAFKEAVGEIGSIIV 245 (432)
T ss_dssp SCSEEEEECCCSCSSH-----------HHHHHHHHHTTSSSCCSEEEEEEEGGGG---GGHHHHHHHHHTTSCSCEEEEE
T ss_pred CCCEEEEcCCCCcccc-----------HHHHHHHHHHHHHhcCcceeEEeecccc---HHHHHHHHHHhhcccCCeEEEE
Confidence 3588999999986521 122223321 112256665555533221 24566677776543 3389999
Q ss_pred cCCCcc
Q 004351 209 TKLDTK 214 (759)
Q Consensus 209 TK~D~~ 214 (759)
||+|..
T Consensus 246 nK~D~~ 251 (432)
T 2v3c_C 246 TKLDGS 251 (432)
T ss_dssp ECSSSC
T ss_pred eCCCCc
Confidence 999985
No 203
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=96.34 E-value=0.0083 Score=66.68 Aligned_cols=24 Identities=33% Similarity=0.418 Sum_probs=22.2
Q ss_pred CEEEEEeccCCchHHHHHHHhCCc
Q 004351 25 PAVLVVGHQTDGKSALVEALMGFQ 48 (759)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~~ 48 (759)
+.|++||..+|||||||++|+|..
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~ 181 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAH 181 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSC
T ss_pred CEEEEECCCCCcHHHHHHHHHcCC
Confidence 568999999999999999999975
No 204
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.22 E-value=0.0012 Score=70.39 Aligned_cols=24 Identities=29% Similarity=0.445 Sum_probs=21.0
Q ss_pred CE-EEEEeccCCchHHHHHHHhCCc
Q 004351 25 PA-VLVVGHQTDGKSALVEALMGFQ 48 (759)
Q Consensus 25 Pq-IVVVG~QSsGKSSLLEAL~G~~ 48 (759)
|+ |+++|.+|+||||++..|.|.-
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHH
Confidence 44 7799999999999999999864
No 205
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=96.19 E-value=0.0056 Score=70.37 Aligned_cols=72 Identities=13% Similarity=0.217 Sum_probs=44.8
Q ss_pred EEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHHHHHhCcCCCeE
Q 004351 125 KVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRT 204 (759)
Q Consensus 125 eI~~p~~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~RT 204 (759)
.+.+.+ ..+.||||||...-. .+ |.+-++--+..||+|.+ .+-...++..+.+.++..+...
T Consensus 94 ~~~~~~-~~iNlIDTPGHvDF~-----------~E-----v~raL~~~DgAvlVvda-~~GV~~qT~~v~~~a~~~~lp~ 155 (548)
T 3vqt_A 94 QFPYRD-RVVNLLDTPGHQDFS-----------ED-----TYRVLTAVDSALVVIDA-AKGVEAQTRKLMDVCRMRATPV 155 (548)
T ss_dssp EEEETT-EEEEEECCCCGGGCS-----------HH-----HHHHHHSCSEEEEEEET-TTBSCHHHHHHHHHHHHTTCCE
T ss_pred EEEECC-EEEEEEeCCCcHHHH-----------HH-----HHHHHHhcCceEEEeec-CCCcccccHHHHHHHHHhCCce
Confidence 444443 468999999996532 11 11223345666655543 3334444555556666678899
Q ss_pred EEEecCCCcc
Q 004351 205 IIVSTKLDTK 214 (759)
Q Consensus 205 IgVlTK~D~~ 214 (759)
|.++||+|..
T Consensus 156 i~fINK~Dr~ 165 (548)
T 3vqt_A 156 MTFVNKMDRE 165 (548)
T ss_dssp EEEEECTTSC
T ss_pred EEEEecccch
Confidence 9999999985
No 206
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=96.07 E-value=0.029 Score=60.40 Aligned_cols=70 Identities=11% Similarity=0.201 Sum_probs=42.7
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcH--HH---HHHHHHhCcCCCeEEE
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNA--TT---RRVVMQIDPELKRTII 206 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~--~~---l~lar~~Dp~g~RTIg 206 (759)
..|.|.||||--+-.. + .+ +...|.++.+.+|+++-..+.+.+. .+ +..+++..| +...+.
T Consensus 46 v~LqIWDTAGQErf~~---~--------~l--~~~~yyr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~-~ipill 111 (331)
T 3r7w_B 46 IDLAVMELPGQLNYFE---P--------SY--DSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNP-SINIEV 111 (331)
T ss_dssp SCEEEEECCSCSSSCC---C--------SH--HHHHHHTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHCT-TCEEEE
T ss_pred EEEEEEECCCchhccc---h--------hh--hhhhhccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcCC-CCcEEE
Confidence 6799999999754310 0 00 3567888888877766432222221 11 222344455 578899
Q ss_pred EecCCCccc
Q 004351 207 VSTKLDTKI 215 (759)
Q Consensus 207 VlTK~D~~~ 215 (759)
|.||.|+..
T Consensus 112 vgNK~DL~~ 120 (331)
T 3r7w_B 112 LIHKVDGLS 120 (331)
T ss_dssp ECCCCCSSC
T ss_pred EEECcccCc
Confidence 999999964
No 207
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.01 E-value=0.029 Score=59.62 Aligned_cols=25 Identities=36% Similarity=0.441 Sum_probs=22.0
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
-|+++|.+||||||++..|.|.--|
T Consensus 104 vi~lvG~nGsGKTTll~~Lagll~~ 128 (304)
T 1rj9_A 104 VVLVVGVNGVGKTTTIAKLGRYYQN 128 (304)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHh
Confidence 4778999999999999999997644
No 208
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.84 E-value=0.022 Score=61.20 Aligned_cols=69 Identities=19% Similarity=0.276 Sum_probs=41.0
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHHHHHhCcCCCeEEEEecCCC
Q 004351 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKLD 212 (759)
Q Consensus 133 ~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~RTIgVlTK~D 212 (759)
++.+||++|...... .....+..+.+... ++..++++-+. ..++++..++.+.....-|+.|+||.|
T Consensus 213 d~vliDtaG~~~~~~--------~l~~eL~~i~ral~--~de~llvLDa~---t~~~~~~~~~~~~~~~~it~iilTKlD 279 (328)
T 3e70_C 213 DVVLIDTAGRSETNR--------NLMDEMKKIARVTK--PNLVIFVGDAL---AGNAIVEQARQFNEAVKIDGIILTKLD 279 (328)
T ss_dssp SEEEEEECCSCCTTT--------CHHHHHHHHHHHHC--CSEEEEEEEGG---GTTHHHHHHHHHHHHSCCCEEEEECGG
T ss_pred hhhHHhhccchhHHH--------HHHHHHHHHHHHhc--CCCCEEEEecH---HHHHHHHHHHHHHHhcCCCEEEEeCcC
Confidence 456899999965321 11333334333322 44444444322 225677777777665567899999999
Q ss_pred cc
Q 004351 213 TK 214 (759)
Q Consensus 213 ~~ 214 (759)
-.
T Consensus 280 ~~ 281 (328)
T 3e70_C 280 AD 281 (328)
T ss_dssp GC
T ss_pred Cc
Confidence 74
No 209
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.73 E-value=0.058 Score=57.09 Aligned_cols=72 Identities=14% Similarity=0.221 Sum_probs=42.1
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHHHHHhCcCCCeEEEEecCC
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKL 211 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~RTIgVlTK~ 211 (759)
.++.||||||..... . . .....++..+ ...+ .++.++|++.+.. .+.+...++.+.+...-+..|+||.
T Consensus 181 ~D~ViIDTpg~~~~~--~-~---~~l~~el~~i-~~~~-~~d~vllVvda~~---g~~~~~~~~~~~~~~~i~gvVlnk~ 249 (297)
T 1j8m_F 181 MEIIIVDTAGRHGYG--E-E---AALLEEMKNI-YEAI-KPDEVTLVIDASI---GQKAYDLASKFNQASKIGTIIITKM 249 (297)
T ss_dssp CSEEEEECCCSCCTT--C-H---HHHHHHHHHH-HHHH-CCSEEEEEEEGGG---GGGHHHHHHHHHHTCTTEEEEEECG
T ss_pred CCEEEEeCCCCcccc--c-H---HHHHHHHHHH-HHHh-cCCEEEEEeeCCc---hHHHHHHHHHHHhhCCCCEEEEeCC
Confidence 578999999997511 0 0 1112222222 2223 5666666654332 3556777777766433378899999
Q ss_pred Ccc
Q 004351 212 DTK 214 (759)
Q Consensus 212 D~~ 214 (759)
|..
T Consensus 250 D~~ 252 (297)
T 1j8m_F 250 DGT 252 (297)
T ss_dssp GGC
T ss_pred CCC
Confidence 985
No 210
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=95.40 E-value=0.022 Score=67.37 Aligned_cols=82 Identities=15% Similarity=0.107 Sum_probs=48.1
Q ss_pred cccceEEEEEEecCC----CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHH
Q 004351 117 FSAKEIIIKVEFKYC----PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRR 192 (759)
Q Consensus 117 fS~d~I~leI~~p~~----p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~ 192 (759)
+....+.+...+... .-+.||||||-..-. .+|.. -++=-+..||+| ++.+-...++..
T Consensus 66 I~s~~~s~~~~~~~~~~~~~~iNlIDTPGHvDF~------------~Ev~~----aLr~~DgavlvV-DaveGV~~qT~~ 128 (709)
T 4fn5_A 66 ITSAAVTTFWKGSRGQYDNYRVNVIDTPGHVDFT------------IEVER----SLRVLDGAVVVF-CGTSGVEPQSET 128 (709)
T ss_dssp --CCEEEEEECCTTSCSCCEEEEEECCCSCTTCH------------HHHHH----HHHHCSEEEEEE-ETTTCSCHHHHH
T ss_pred EEeeeEEEEeccCcCCCCCEEEEEEeCCCCcccH------------HHHHH----HHHHhCeEEEEE-ECCCCCchhHHH
Confidence 334555555544332 258999999986531 11111 122244455444 444444555666
Q ss_pred HHHHhCcCCCeEEEEecCCCccc
Q 004351 193 VVMQIDPELKRTIIVSTKLDTKI 215 (759)
Q Consensus 193 lar~~Dp~g~RTIgVlTK~D~~~ 215 (759)
+.+++...+-+.|.|+||+|...
T Consensus 129 v~~~a~~~~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 129 VWRQANKYGVPRIVYVNKMDRQG 151 (709)
T ss_dssp HHHHHHHHTCCEEEEEECSSSTT
T ss_pred HHHHHHHcCCCeEEEEccccccC
Confidence 66666667889999999999853
No 211
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=95.01 E-value=0.01 Score=69.44 Aligned_cols=67 Identities=24% Similarity=0.199 Sum_probs=40.8
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHHHHHhCcCCCeEEEEecCC
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKL 211 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~RTIgVlTK~ 211 (759)
..++||||||-..-. . -|.+-++--+..||+|.+..-. ..++..+.+.+...+-+.|.++||+
T Consensus 67 ~~iNlIDTPGH~DF~------------~----Ev~raL~~~DgavlVVDa~~GV-~~qT~~v~~~a~~~~lp~i~~INKm 129 (638)
T 3j25_A 67 TKVNIIDTPGHMDFL------------A----EVYRSLSVLDGAILLISAKDGV-QAQTRILFHALRKMGIPTIFFINKI 129 (638)
T ss_dssp CBCCCEECCCSSSTH------------H----HHHHHHTTCSEEECCEESSCTT-CSHHHHHHHHHHHHTCSCEECCEEC
T ss_pred EEEEEEECCCcHHHH------------H----HHHHHHHHhCEEEEEEeCCCCC-cHHHHHHHHHHHHcCCCeEEEEecc
Confidence 468999999986421 1 1223344556666655443222 2334445555555577889999999
Q ss_pred Cccc
Q 004351 212 DTKI 215 (759)
Q Consensus 212 D~~~ 215 (759)
|...
T Consensus 130 Dr~~ 133 (638)
T 3j25_A 130 DQNG 133 (638)
T ss_dssp CSSS
T ss_pred cccc
Confidence 9854
No 212
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=95.00 E-value=0.029 Score=58.91 Aligned_cols=29 Identities=28% Similarity=0.371 Sum_probs=24.1
Q ss_pred CCEEEEEeccCCchHHHHHHHhCCcccee
Q 004351 24 APAVLVVGHQTDGKSALVEALMGFQFNHV 52 (759)
Q Consensus 24 lPqIVVVG~QSsGKSSLLEAL~G~~fp~~ 52 (759)
-..+++||..++|||||+|+|+|.....+
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~~~~~ 148 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKNIAKT 148 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCC--
T ss_pred CceEEEEecCCCchHHHHHHHhcCceeec
Confidence 35799999999999999999999875434
No 213
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.90 E-value=0.14 Score=54.67 Aligned_cols=75 Identities=15% Similarity=0.222 Sum_probs=41.8
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhc-CccceeEeecccCCcCcHHHHHHHHHhCcCCCeEEEEecC
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQ-HREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTK 210 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~-~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~RTIgVlTK 210 (759)
.++.||||||..... ..+-.....+...+...+. .++.++|++.+.. .+.++..++.+.+...-+=.|+||
T Consensus 192 yD~VIIDTpg~l~~~-----~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~---~~~~l~~~~~~~~~~~i~GvVltk 263 (320)
T 1zu4_A 192 YDLLLIDTAGRLQNK-----TNLMAELEKMNKIIQQVEKSAPHEVLLVIDATT---GQNGVIQAEEFSKVADVSGIILTK 263 (320)
T ss_dssp CSEEEEECCCCGGGH-----HHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGG---THHHHHHHHHHTTTSCCCEEEEEC
T ss_pred CCEEEEcCCCccccc-----HHHHHHHHHHHHHHhcccCCCCceEEEEEECCC---cHHHHHHHHHHhhcCCCcEEEEeC
Confidence 578999999986531 0000011112222222222 3555565554432 256777778887655555578999
Q ss_pred CCcc
Q 004351 211 LDTK 214 (759)
Q Consensus 211 ~D~~ 214 (759)
.|..
T Consensus 264 ~d~~ 267 (320)
T 1zu4_A 264 MDST 267 (320)
T ss_dssp GGGC
T ss_pred CCCC
Confidence 9974
No 214
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.85 E-value=0.026 Score=59.73 Aligned_cols=25 Identities=16% Similarity=0.337 Sum_probs=21.7
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
-|+++|.+|+|||+++..|.+.--+
T Consensus 107 vi~lvG~~GsGKTTl~~~LA~~l~~ 131 (296)
T 2px0_A 107 YIVLFGSTGAGKTTTLAKLAAISML 131 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5889999999999999999986543
No 215
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.77 E-value=0.02 Score=63.72 Aligned_cols=70 Identities=21% Similarity=0.304 Sum_probs=41.5
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHHHHHhCcCCCeEEEEecCC
Q 004351 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKL 211 (759)
Q Consensus 132 p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~RTIgVlTK~ 211 (759)
.++.||||||..... ......+..+ ...+ .++.++|++.+.. .+.+...++.+++...-+-.|+||.
T Consensus 181 ~DvVIIDTaG~l~~d--------~~l~~el~~i-~~~~-~pd~vlLVvDa~t---gq~av~~a~~f~~~l~i~GVIlTKl 247 (425)
T 2ffh_A 181 RDLILVDTAGRLQID--------EPLMGELARL-KEVL-GPDEVLLVLDAMT---GQEALSVARAFDEKVGVTGLVLTKL 247 (425)
T ss_dssp CSEEEEECCCCSSCC--------HHHHHHHHHH-HHHH-CCSEEEEEEEGGG---TTHHHHHHHHHHHHTCCCEEEEESG
T ss_pred CCEEEEcCCCccccc--------HHHHHHHHHh-hhcc-CCceEEEEEeccc---hHHHHHHHHHHHhcCCceEEEEeCc
Confidence 578999999976531 1112222222 2222 5666666554332 3566777777776544577799999
Q ss_pred Ccc
Q 004351 212 DTK 214 (759)
Q Consensus 212 D~~ 214 (759)
|..
T Consensus 248 D~~ 250 (425)
T 2ffh_A 248 DGD 250 (425)
T ss_dssp GGC
T ss_pred CCc
Confidence 974
No 216
>3ljb_A Interferon-induced GTP-binding protein MX1; four-helix-bundle, antiviral protein; 2.40A {Homo sapiens}
Probab=94.44 E-value=0.31 Score=51.01 Aligned_cols=98 Identities=13% Similarity=0.072 Sum_probs=71.0
Q ss_pred HHHHHHHhCccccCCCCc---c--hhhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHhhccccccchHHH
Q 004351 444 REEIVNACGVEDIHDGTN---Y--SRTACVIAVAKARDTFEPFLHQLGCRLLHILKRLLPISIYLLQKEGEYLSGHEVFL 518 (759)
Q Consensus 444 ~eeia~a~g~~~~~~~~~---~--~~aa~~ia~~~~~~~~~Pl~~~l~~r~~~il~rl~~i~~~~~~~~~~~~~~~~~f~ 518 (759)
+++|..-. ..|+|+. | ..|..+|.+...+.|-+|-++++-.- ..++++. ...+.. ..+.+||.+.
T Consensus 65 ~~ev~~~e---~~~rGrELPgFv~y~aFE~lVk~qI~~LeePAl~cl~~V-~e~l~~~---~~~i~~---~~F~rFpnL~ 134 (271)
T 3ljb_A 65 SRKIQKFE---NQYRGRELPGFVNYRTFETIVKQQIKALEEPAVDMLHTV-TDMVRLA---FTDVSI---KNFEEFFNLH 134 (271)
T ss_dssp HHHHHHHH---C---------CTTHHHHHHHHHHHHHTTHHHHHHHHHHH-HHHHHHH---HHHHHH---HHHTTSHHHH
T ss_pred HHHHHHHH---HHccCcccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH---HHHHHH---HHHhhhHHHH
Confidence 45666544 3344543 3 88999999999999999998776544 2333333 333333 2577999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhhhhhhhhh
Q 004351 519 RRVASAFNNFAESTERACREKCMEDLVSTTRYVT 552 (759)
Q Consensus 519 ~~~~~~~~~fv~~~~~~c~~~~~~~l~s~t~~v~ 552 (759)
+++++....+..+.++.|++++++.|..-. +|+
T Consensus 135 ~~i~~~i~~i~~~~~~~Ae~~I~~~~~mE~-~vy 167 (271)
T 3ljb_A 135 RTAKSKIEDIRAEQEREGEKLIRLHFQMEQ-IVY 167 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccc
Confidence 999999999999999999999999999876 454
No 217
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=94.06 E-value=0.025 Score=62.35 Aligned_cols=39 Identities=23% Similarity=0.157 Sum_probs=29.0
Q ss_pred CCEEEEEeccCCchHHHHHHHhCCcc-ceecCccccccce
Q 004351 24 APAVLVVGHQTDGKSALVEALMGFQF-NHVGGGTKTRRPI 62 (759)
Q Consensus 24 lPqIVVVG~QSsGKSSLLEAL~G~~f-p~~g~g~cTR~P~ 62 (759)
-..+.+||..++|||||+++|+|..+ ....--.||+-|+
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~ 59 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPE 59 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecce
Confidence 35899999999999999999999776 3222234555544
No 218
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.98 E-value=0.034 Score=58.74 Aligned_cols=71 Identities=21% Similarity=0.292 Sum_probs=40.9
Q ss_pred CCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceeEeecccCCcCcHHHHHHHHHhCcCCCeEEEEecC
Q 004351 131 CPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTK 210 (759)
Q Consensus 131 ~p~LtLVDLPGl~~~~~~~q~~~~e~~~~~v~~lv~~Yi~~~~~IIL~V~~~~D~~~~~~l~lar~~Dp~g~RTIgVlTK 210 (759)
.+++.|||+||..... ......+..+... + .++.+++++.... .+.+.+.++.+.+...-+-.|+||
T Consensus 180 ~~D~viiDtpp~~~~d--------~~~~~~l~~~~~~-~-~~~~~~lv~~~~~---~~~~~~~~~~~~~~~~i~givlnk 246 (295)
T 1ls1_A 180 ARDLILVDTAGRLQID--------EPLMGELARLKEV-L-GPDEVLLVLDAMT---GQEALSVARAFDEKVGVTGLVLTK 246 (295)
T ss_dssp TCCEEEEECCCCSSCC--------HHHHHHHHHHHHH-H-CCSEEEEEEEGGG---THHHHHHHHHHHHHTCCCEEEEEC
T ss_pred CCCEEEEeCCCCcccc--------HHHHHHHHHHhhh-c-CCCEEEEEEeCCC---cHHHHHHHHHHhhcCCCCEEEEEC
Confidence 3689999999886531 1112333333322 2 4666665554332 355666677766543335568999
Q ss_pred CCcc
Q 004351 211 LDTK 214 (759)
Q Consensus 211 ~D~~ 214 (759)
.|..
T Consensus 247 ~d~~ 250 (295)
T 1ls1_A 247 LDGD 250 (295)
T ss_dssp GGGC
T ss_pred CCCC
Confidence 9975
No 219
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.47 E-value=0.29 Score=53.18 Aligned_cols=26 Identities=31% Similarity=0.446 Sum_probs=22.4
Q ss_pred CE-EEEEeccCCchHHHHHHHhCCccc
Q 004351 25 PA-VLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 25 Pq-IVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
|+ |++||.+||||||++..|.|.--|
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhccc
Confidence 54 679999999999999999997544
No 220
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=93.46 E-value=0.062 Score=55.76 Aligned_cols=26 Identities=35% Similarity=0.558 Sum_probs=23.7
Q ss_pred CEEEEEeccCCchHHHHHHHhCCccc
Q 004351 25 PAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
..+++||..++|||||+|+|.|..+.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~ 125 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRAS 125 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-
T ss_pred hheEEeCCCCCCHHHHHHHHhccccc
Confidence 78999999999999999999998765
No 221
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=93.33 E-value=0.039 Score=63.95 Aligned_cols=40 Identities=10% Similarity=0.184 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhhhhhhcc
Q 004351 516 VFLRRVASAFNNFAESTERACREKCMEDLVSTTRYVTWSL 555 (759)
Q Consensus 516 ~f~~~~~~~~~~fv~~~~~~c~~~~~~~l~s~t~~v~w~l 555 (759)
.+...+...|..|+..=+..+...|..=|..+...+.-.+
T Consensus 383 ~L~~~i~~~~~~~~~~N~~~s~~~C~~ll~~l~~~l~~~i 422 (592)
T 1f5n_A 383 ELAAQLEKKRDDFCKQNQEASSDRCSGLLQVIFSPLEEEV 422 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667788888899988888888888887776665554444
No 222
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=93.16 E-value=0.05 Score=58.80 Aligned_cols=30 Identities=23% Similarity=0.097 Sum_probs=25.7
Q ss_pred CCCCCEEEEEeccCCchHHHHHHHhCCccc
Q 004351 21 PFDAPAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 21 ~i~lPqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.-+.|.|+++|..|||||||+|+|+|.-.+
T Consensus 71 ~~~~~~v~lvG~pgaGKSTLln~L~~~~~~ 100 (349)
T 2www_A 71 KPLAFRVGLSGPPGAGKSTFIEYFGKMLTE 100 (349)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred ccCceEEEEEcCCCCCHHHHHHHHHHHhhh
Confidence 345889999999999999999999986443
No 223
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.85 E-value=0.048 Score=53.73 Aligned_cols=26 Identities=27% Similarity=0.325 Sum_probs=23.6
Q ss_pred CCCEEEEEeccCCchHHHHHHHhCCc
Q 004351 23 DAPAVLVVGHQTDGKSALVEALMGFQ 48 (759)
Q Consensus 23 ~lPqIVVVG~QSsGKSSLLEAL~G~~ 48 (759)
..|.|+++|..++|||||+++|++..
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 56899999999999999999999753
No 224
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.02 E-value=0.082 Score=52.20 Aligned_cols=28 Identities=25% Similarity=0.277 Sum_probs=24.9
Q ss_pred CCCEEEEEeccCCchHHHHHHHhCCccc
Q 004351 23 DAPAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 23 ~lPqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
..|.|+|+|+.++|||||++.|++..|.
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~ 64 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKD 64 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 5789999999999999999999987554
No 225
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.83 E-value=0.08 Score=53.48 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=22.0
Q ss_pred EEEEeccCCchHHHHHHHhCCccc
Q 004351 27 VLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 27 IVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
++++|..||||||||+.|+|.--|
T Consensus 33 ~~iiG~nGsGKSTLl~~l~Gl~~p 56 (224)
T 2pcj_A 33 VSIIGASGSGKSTLLYILGLLDAP 56 (224)
T ss_dssp EEEEECTTSCHHHHHHHHTTSSCC
T ss_pred EEEECCCCCCHHHHHHHHhcCCCC
Confidence 679999999999999999999755
No 226
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=91.76 E-value=0.075 Score=56.05 Aligned_cols=26 Identities=23% Similarity=0.107 Sum_probs=23.5
Q ss_pred EEEEEeccCCchHHHHHHHhCCccce
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFNH 51 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp~ 51 (759)
.++++|..++||||||++|.|..-|.
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~~~~ 196 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGLKLR 196 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTCCCC
T ss_pred eEEEECCCCCcHHHHHHHhccccccc
Confidence 57899999999999999999987663
No 227
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.59 E-value=0.083 Score=53.78 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=23.2
Q ss_pred EEEEEeccCCchHHHHHHHhCCccce
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFNH 51 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp~ 51 (759)
-++++|..||||||||+.|+|+--|.
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~~p~ 58 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLDKPT 58 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCS
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC
Confidence 37899999999999999999997663
No 228
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=91.44 E-value=0.075 Score=50.84 Aligned_cols=26 Identities=23% Similarity=0.229 Sum_probs=22.1
Q ss_pred CEEEEEeccCCchHHHHHHHhCCccc
Q 004351 25 PAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.-.+++|..+|||||||+||.+.=.+
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHcC
Confidence 36799999999999999999875443
No 229
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=91.40 E-value=0.078 Score=53.50 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=20.9
Q ss_pred EEEEEeccCCchHHHHHHHhCCc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQ 48 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~ 48 (759)
-++++|..|||||||++.|+|.-
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 47899999999999999999964
No 230
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=91.39 E-value=0.1 Score=53.38 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=22.5
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
-++++|..||||||||+.|+|+--|
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~p 54 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFYQP 54 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 3789999999999999999999655
No 231
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=91.34 E-value=0.11 Score=53.03 Aligned_cols=27 Identities=26% Similarity=0.178 Sum_probs=23.4
Q ss_pred CCCCCEEEEEecc---------CCchHHHHHHHhCC
Q 004351 21 PFDAPAVLVVGHQ---------TDGKSALVEALMGF 47 (759)
Q Consensus 21 ~i~lPqIVVVG~Q---------SsGKSSLLEAL~G~ 47 (759)
.-....|+|||+. ++|||||++.|++-
T Consensus 16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~ 51 (255)
T 3c5h_A 16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRP 51 (255)
T ss_dssp CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCC
T ss_pred CCceeEEEEECCCccccccCCCCcCHHHHHHHHHhc
Confidence 3344589999999 99999999999994
No 232
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=91.25 E-value=0.11 Score=58.18 Aligned_cols=25 Identities=32% Similarity=0.496 Sum_probs=21.5
Q ss_pred CCCEEEEEeccCCchHHHHHHHhCC
Q 004351 23 DAPAVLVVGHQTDGKSALVEALMGF 47 (759)
Q Consensus 23 ~lPqIVVVG~QSsGKSSLLEAL~G~ 47 (759)
++--|.|+|.+++|||+|||.|+|.
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHhhh
Confidence 3345888999999999999999975
No 233
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=91.22 E-value=0.049 Score=58.02 Aligned_cols=25 Identities=24% Similarity=0.201 Sum_probs=20.3
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.++++|..|+|||||||+|+|..-|
T Consensus 175 ~~~lvG~sG~GKSTLln~L~g~~~~ 199 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAISPELGL 199 (307)
T ss_dssp EEEEEESHHHHHHHHHHHHCC----
T ss_pred EEEEECCCCCCHHHHHHHhcccccc
Confidence 6899999999999999999998655
No 234
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=91.17 E-value=0.099 Score=53.53 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=22.5
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
-++++|..||||||||+.|+|.--|
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~~p 50 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIVKP 50 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4679999999999999999999755
No 235
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=91.13 E-value=0.079 Score=52.25 Aligned_cols=22 Identities=32% Similarity=0.372 Sum_probs=20.5
Q ss_pred EEEEeccCCchHHHHHHHhCCc
Q 004351 27 VLVVGHQTDGKSALVEALMGFQ 48 (759)
Q Consensus 27 IVVVG~QSsGKSSLLEAL~G~~ 48 (759)
++++|..|||||||++.|+|.-
T Consensus 23 ~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 23 VVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhhC
Confidence 7799999999999999999974
No 236
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=91.12 E-value=0.081 Score=51.06 Aligned_cols=22 Identities=14% Similarity=0.362 Sum_probs=20.6
Q ss_pred EEEEEeccCCchHHHHHHHhCC
Q 004351 26 AVLVVGHQTDGKSALVEALMGF 47 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~ 47 (759)
-++++|..|||||||++.|.|.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999985
No 237
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=91.11 E-value=0.08 Score=52.11 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=20.6
Q ss_pred EEEEEeccCCchHHHHHHHhCC
Q 004351 26 AVLVVGHQTDGKSALVEALMGF 47 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~ 47 (759)
.++++|..|||||||++.|+|.
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999999995
No 238
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=91.07 E-value=0.1 Score=54.28 Aligned_cols=30 Identities=23% Similarity=0.460 Sum_probs=25.0
Q ss_pred CCCCC-EEEEEeccCCchHHHHHHHhCCcccee
Q 004351 21 PFDAP-AVLVVGHQTDGKSALVEALMGFQFNHV 52 (759)
Q Consensus 21 ~i~lP-qIVVVG~QSsGKSSLLEAL~G~~fp~~ 52 (759)
.++ - .++++|..+|||||||+.|+|.- |..
T Consensus 27 ~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~ 57 (263)
T 2pjz_A 27 EVN-GEKVIILGPNGSGKTTLLRAISGLL-PYS 57 (263)
T ss_dssp EEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCE
T ss_pred EEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCC
Confidence 344 5 46799999999999999999998 743
No 239
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=91.01 E-value=0.11 Score=52.45 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=22.0
Q ss_pred EEEEeccCCchHHHHHHHhCCccc
Q 004351 27 VLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 27 IVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
++++|..||||||||+.|+|.--|
T Consensus 38 ~~iiG~NGsGKSTLlk~l~Gl~~p 61 (214)
T 1sgw_A 38 VNFHGPNGIGKTTLLKTISTYLKP 61 (214)
T ss_dssp EEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEECCCCCCHHHHHHHHhcCCCC
Confidence 679999999999999999998655
No 240
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=90.96 E-value=0.11 Score=52.95 Aligned_cols=25 Identities=40% Similarity=0.401 Sum_probs=22.6
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
-++++|..||||||||+.|+|.--|
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~~p 57 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEMDK 57 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCSEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4789999999999999999999755
No 241
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=90.85 E-value=0.11 Score=56.46 Aligned_cols=24 Identities=38% Similarity=0.589 Sum_probs=22.3
Q ss_pred EEEEEeccCCchHHHHHHHhCCcc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQF 49 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~f 49 (759)
.++++|..|+||||||++|+|..-
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 589999999999999999999875
No 242
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=90.79 E-value=0.11 Score=53.31 Aligned_cols=25 Identities=28% Similarity=0.466 Sum_probs=22.5
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
-++++|..||||||||+.|+|+--|
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~~p 61 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFYIP 61 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 3679999999999999999999755
No 243
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=90.72 E-value=0.12 Score=53.82 Aligned_cols=25 Identities=32% Similarity=0.533 Sum_probs=22.4
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
-++++|..||||||||+.|+|.--|
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~~p 63 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYLSP 63 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSSCC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCC
Confidence 3679999999999999999998655
No 244
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=90.69 E-value=0.12 Score=52.45 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=22.6
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
-++++|..||||||||+.|+|.--|
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~~p 60 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGELEP 60 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcC
Confidence 4779999999999999999999755
No 245
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=90.68 E-value=0.11 Score=53.44 Aligned_cols=24 Identities=33% Similarity=0.654 Sum_probs=22.1
Q ss_pred EEEEeccCCchHHHHHHHhCCccc
Q 004351 27 VLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 27 IVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
++++|..||||||||+.|+|.--|
T Consensus 36 ~~liG~nGsGKSTLlk~l~Gl~~p 59 (257)
T 1g6h_A 36 TLIIGPNGSGKSTLINVITGFLKA 59 (257)
T ss_dssp EEEECSTTSSHHHHHHHHTTSSCC
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC
Confidence 679999999999999999999755
No 246
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=90.66 E-value=0.12 Score=53.66 Aligned_cols=24 Identities=17% Similarity=0.354 Sum_probs=22.0
Q ss_pred EEEEeccCCchHHHHHHHhCCccc
Q 004351 27 VLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 27 IVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
++++|..||||||||..|+|.--|
T Consensus 35 ~~liG~nGsGKSTLlk~l~Gl~~p 58 (262)
T 1b0u_A 35 ISIIGSSGSGKSTFLRCINFLEKP 58 (262)
T ss_dssp EEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEECCCCCCHHHHHHHHhcCCCC
Confidence 679999999999999999999755
No 247
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=90.58 E-value=0.093 Score=50.25 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=21.9
Q ss_pred EEEEeccCCchHHHHHHHhCCccce
Q 004351 27 VLVVGHQTDGKSALVEALMGFQFNH 51 (759)
Q Consensus 27 IVVVG~QSsGKSSLLEAL~G~~fp~ 51 (759)
++++|+.+||||||+.+|+|.- |.
T Consensus 36 v~L~G~nGaGKTTLlr~l~g~l-~~ 59 (158)
T 1htw_A 36 VYLNGDLGAGKTTLTRGMLQGI-GH 59 (158)
T ss_dssp EEEECSTTSSHHHHHHHHHHHT-TC
T ss_pred EEEECCCCCCHHHHHHHHHHhC-CC
Confidence 6799999999999999999987 63
No 248
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.52 E-value=0.12 Score=52.68 Aligned_cols=24 Identities=25% Similarity=0.457 Sum_probs=22.1
Q ss_pred EEEEeccCCchHHHHHHHhCCccc
Q 004351 27 VLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 27 IVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
++++|..||||||||+.|+|.--|
T Consensus 35 ~~l~G~nGsGKSTLl~~l~Gl~~p 58 (240)
T 1ji0_A 35 VTLIGANGAGKTTTLSAIAGLVRA 58 (240)
T ss_dssp EEEECSTTSSHHHHHHHHTTSSCC
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC
Confidence 679999999999999999998755
No 249
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=90.37 E-value=0.14 Score=49.22 Aligned_cols=22 Identities=41% Similarity=0.679 Sum_probs=20.6
Q ss_pred EEEEEeccCCchHHHHHHHhCC
Q 004351 26 AVLVVGHQTDGKSALVEALMGF 47 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~ 47 (759)
-|+++|..|||||||++.|+|.
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 3789999999999999999998
No 250
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=90.32 E-value=0.1 Score=50.58 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=20.5
Q ss_pred EEEEEeccCCchHHHHHHHhCC
Q 004351 26 AVLVVGHQTDGKSALVEALMGF 47 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~ 47 (759)
-|+++|..|||||||++.|.|.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 4789999999999999999997
No 251
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.26 E-value=0.13 Score=53.15 Aligned_cols=24 Identities=13% Similarity=0.191 Sum_probs=22.1
Q ss_pred EEEEeccCCchHHHHHHHhCCccc
Q 004351 27 VLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 27 IVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
++++|..||||||||+.|+|.--|
T Consensus 44 ~~l~G~NGsGKSTLlk~l~Gl~~p 67 (256)
T 1vpl_A 44 FGLIGPNGAGKTTTLRIISTLIKP 67 (256)
T ss_dssp EEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEECCCCCCHHHHHHHHhcCCCC
Confidence 679999999999999999999755
No 252
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=90.20 E-value=0.13 Score=53.74 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=22.1
Q ss_pred EEEEeccCCchHHHHHHHhCCccc
Q 004351 27 VLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 27 IVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
++++|..||||||||+.|+|+--|
T Consensus 37 ~~iiGpnGsGKSTLl~~l~Gl~~p 60 (275)
T 3gfo_A 37 TAILGGNGVGKSTLFQNFNGILKP 60 (275)
T ss_dssp EEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEECCCCCCHHHHHHHHHcCCCC
Confidence 689999999999999999998755
No 253
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=90.19 E-value=0.12 Score=52.21 Aligned_cols=27 Identities=19% Similarity=0.401 Sum_probs=24.4
Q ss_pred CEEEEEeccCCchHHHHHHHh---CCccce
Q 004351 25 PAVLVVGHQTDGKSALVEALM---GFQFNH 51 (759)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~---G~~fp~ 51 (759)
..|+++|..|||||||+..|+ |...|.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 369999999999999999999 998763
No 254
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=90.15 E-value=0.14 Score=53.29 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=22.0
Q ss_pred EEEEeccCCchHHHHHHHhCCccc
Q 004351 27 VLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 27 IVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
++++|..||||||||+.|+|.--|
T Consensus 53 ~~liG~NGsGKSTLlk~l~Gl~~p 76 (263)
T 2olj_A 53 VVVIGPSGSGKSTFLRCLNLLEDF 76 (263)
T ss_dssp EEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEEcCCCCcHHHHHHHHHcCCCC
Confidence 679999999999999999999655
No 255
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=90.14 E-value=0.11 Score=51.32 Aligned_cols=25 Identities=28% Similarity=0.274 Sum_probs=21.6
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
-|+|+|..|||||||++.|.|.--|
T Consensus 24 ~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 24 LVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4679999999999999999997543
No 256
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=90.13 E-value=0.14 Score=53.43 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=22.4
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
-++++|..||||||||+.|+|+--|
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~~p 71 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLYQP 71 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 3679999999999999999999755
No 257
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=90.10 E-value=0.14 Score=53.17 Aligned_cols=24 Identities=33% Similarity=0.540 Sum_probs=21.9
Q ss_pred EEEEeccCCchHHHHHHHhCCccc
Q 004351 27 VLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 27 IVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
++++|..||||||||+.|+|+--|
T Consensus 36 ~~liG~nGsGKSTLl~~i~Gl~~p 59 (266)
T 2yz2_A 36 LLVAGNTGSGKSTLLQIVAGLIEP 59 (266)
T ss_dssp EEEECSTTSSHHHHHHHHTTSSCC
T ss_pred EEEECCCCCcHHHHHHHHhCCCCC
Confidence 679999999999999999999655
No 258
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=90.05 E-value=0.13 Score=50.85 Aligned_cols=20 Identities=30% Similarity=0.615 Sum_probs=18.8
Q ss_pred EEEEeccCCchHHHHHHHhC
Q 004351 27 VLVVGHQTDGKSALVEALMG 46 (759)
Q Consensus 27 IVVVG~QSsGKSSLLEAL~G 46 (759)
||++|..|+||+||++.|+.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999974
No 259
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=90.02 E-value=0.11 Score=50.23 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=20.4
Q ss_pred EEEEeccCCchHHHHHHHhCCc
Q 004351 27 VLVVGHQTDGKSALVEALMGFQ 48 (759)
Q Consensus 27 IVVVG~QSsGKSSLLEAL~G~~ 48 (759)
++++|..|||||||++.|+|.-
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhhC
Confidence 7899999999999999999964
No 260
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=89.88 E-value=0.15 Score=52.62 Aligned_cols=30 Identities=30% Similarity=0.475 Sum_probs=24.6
Q ss_pred EEEEeccCCchHHHHHHHhCCccceecCcccc
Q 004351 27 VLVVGHQTDGKSALVEALMGFQFNHVGGGTKT 58 (759)
Q Consensus 27 IVVVG~QSsGKSSLLEAL~G~~fp~~g~g~cT 58 (759)
++++|..||||||||+.|+|.--|. .|..+
T Consensus 34 ~~l~G~nGsGKSTLl~~l~Gl~~p~--~G~I~ 63 (253)
T 2nq2_C 34 LAVLGQNGCGKSTLLDLLLGIHRPI--QGKIE 63 (253)
T ss_dssp EEEECCSSSSHHHHHHHHTTSSCCS--EEEEE
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--CcEEE
Confidence 6799999999999999999997552 35444
No 261
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=89.82 E-value=0.15 Score=52.46 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=22.4
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
-++++|..||||||||+.|+|.--|
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~~p 52 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMTSG 52 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCC
Confidence 3679999999999999999999755
No 262
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=89.72 E-value=0.085 Score=52.82 Aligned_cols=30 Identities=20% Similarity=0.058 Sum_probs=24.4
Q ss_pred EEEEEeccCCchHHHHHHHhCCccceecCcccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFNHVGGGTKT 58 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp~~g~g~cT 58 (759)
-++++|..+|||||||..|+|. -| . .|...
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl-~p-~-~G~I~ 53 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ-AL-Q-SKQVS 53 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH-HH-H-TTSCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC-CC-c-CCeee
Confidence 3789999999999999999999 44 3 45553
No 263
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=89.63 E-value=0.14 Score=53.06 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=21.0
Q ss_pred EEEEEeccCCchHHHHHHHhCCc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQ 48 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~ 48 (759)
-++++|..||||||||+.|+|..
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCT
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36799999999999999999984
No 264
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=89.54 E-value=0.13 Score=51.43 Aligned_cols=22 Identities=23% Similarity=0.422 Sum_probs=20.7
Q ss_pred EEEEeccCCchHHHHHHHhCCc
Q 004351 27 VLVVGHQTDGKSALVEALMGFQ 48 (759)
Q Consensus 27 IVVVG~QSsGKSSLLEAL~G~~ 48 (759)
++++|..|||||||++.|+|.-
T Consensus 26 ~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 26 LVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhhC
Confidence 7899999999999999999965
No 265
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=89.53 E-value=0.16 Score=53.15 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=22.1
Q ss_pred EEEEeccCCchHHHHHHHhCCccc
Q 004351 27 VLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 27 IVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
++++|..||||||||+.|+|.--|
T Consensus 50 ~~liG~NGsGKSTLlk~l~Gl~~p 73 (279)
T 2ihy_A 50 WILYGLNGAGKTTLLNILNAYEPA 73 (279)
T ss_dssp EEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEECCCCCcHHHHHHHHhCCCCC
Confidence 679999999999999999998755
No 266
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=89.37 E-value=0.16 Score=49.41 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=22.6
Q ss_pred CCEEEEEeccCCchHHHHHHHhCC
Q 004351 24 APAVLVVGHQTDGKSALVEALMGF 47 (759)
Q Consensus 24 lPqIVVVG~QSsGKSSLLEAL~G~ 47 (759)
.|.++++|..+||||||++.|++.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 689999999999999999999985
No 267
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=89.37 E-value=0.19 Score=49.67 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=20.4
Q ss_pred EEEEEeccCCchHHHHHHHhCC
Q 004351 26 AVLVVGHQTDGKSALVEALMGF 47 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~ 47 (759)
-|+++|..|||||||++.|.+.
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 4889999999999999999986
No 268
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=89.35 E-value=0.18 Score=51.72 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=20.9
Q ss_pred EEEEEeccCCchHHHHHHHhCCc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQ 48 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~ 48 (759)
-++++|..||||||||+.|+|..
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl~ 53 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGDP 53 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCT
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36799999999999999999983
No 269
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=89.32 E-value=0.16 Score=52.41 Aligned_cols=23 Identities=35% Similarity=0.583 Sum_probs=21.2
Q ss_pred EEEEEeccCCchHHHHHHHhCCc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQ 48 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~ 48 (759)
-++++|..||||||||+.|+|.-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 37799999999999999999985
No 270
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=89.25 E-value=0.15 Score=49.53 Aligned_cols=23 Identities=22% Similarity=0.440 Sum_probs=21.0
Q ss_pred EEEEEeccCCchHHHHHHHhCCc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQ 48 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~ 48 (759)
.++++|..|||||||++.|+|.-
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999864
No 271
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=89.12 E-value=0.18 Score=54.06 Aligned_cols=25 Identities=28% Similarity=0.529 Sum_probs=22.3
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
-++|+|..||||||||++|+|+--|
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~~~ 197 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFIPK 197 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGSCT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcC
Confidence 4889999999999999999998544
No 272
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=89.09 E-value=0.19 Score=52.87 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=22.5
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
-++++|..||||||||+.|+|.--|
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~~p 90 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGELEP 90 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSSCE
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCC
Confidence 3679999999999999999999755
No 273
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=88.91 E-value=0.19 Score=51.45 Aligned_cols=27 Identities=30% Similarity=0.506 Sum_probs=24.7
Q ss_pred CEEEEEeccCCchHHHHHHHh---CCccce
Q 004351 25 PAVLVVGHQTDGKSALVEALM---GFQFNH 51 (759)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~---G~~fp~ 51 (759)
..|+++|..|||||||+..|. |+.++.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 469999999999999999999 999873
No 274
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=88.64 E-value=0.17 Score=49.49 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=20.2
Q ss_pred EEEEEeccCCchHHHHHHHhCC
Q 004351 26 AVLVVGHQTDGKSALVEALMGF 47 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~ 47 (759)
-|.++|..|||||||++.|.|.
T Consensus 8 ~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999995
No 275
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=88.48 E-value=0.24 Score=53.69 Aligned_cols=23 Identities=35% Similarity=0.544 Sum_probs=21.4
Q ss_pred EEEEEeccCCchHHHHHHHhCCc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQ 48 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~ 48 (759)
-++|+|..|||||||+++|+|+-
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 58999999999999999999975
No 276
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=88.34 E-value=0.24 Score=46.64 Aligned_cols=24 Identities=29% Similarity=0.560 Sum_probs=20.3
Q ss_pred CCCEEEEEeccCCchHHHHHHHhC
Q 004351 23 DAPAVLVVGHQTDGKSALVEALMG 46 (759)
Q Consensus 23 ~lPqIVVVG~QSsGKSSLLEAL~G 46 (759)
+-+-.+++|+.++|||++|+||.-
T Consensus 22 ~~g~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 22 KEGINLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 334679999999999999999863
No 277
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=88.29 E-value=0.18 Score=50.24 Aligned_cols=23 Identities=22% Similarity=0.439 Sum_probs=20.7
Q ss_pred CEEEEEeccCCchHHHHHHHhCC
Q 004351 25 PAVLVVGHQTDGKSALVEALMGF 47 (759)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~ 47 (759)
.-||++|..++|||||++.|.+.
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECcCCCCHHHHHHHHHhh
Confidence 35889999999999999999975
No 278
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=88.17 E-value=0.2 Score=48.61 Aligned_cols=25 Identities=12% Similarity=0.189 Sum_probs=22.1
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
-|+++|..||||||+++.|.|.-.|
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~~~~ 32 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFEDPST 32 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHCTTC
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCC
Confidence 4789999999999999999997544
No 279
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=88.15 E-value=0.24 Score=52.21 Aligned_cols=24 Identities=21% Similarity=0.223 Sum_probs=20.8
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.++++|..|+||||||++|+ ..-|
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~~~~ 190 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-GEEL 190 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-SCCC
T ss_pred EEEEECCCCCCHHHHHHHHH-HhhC
Confidence 57999999999999999999 5433
No 280
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=88.07 E-value=0.18 Score=53.69 Aligned_cols=26 Identities=27% Similarity=0.379 Sum_probs=23.3
Q ss_pred EEEEEeccCCchHHHHHHHhCCccce
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFNH 51 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp~ 51 (759)
.+++||..|||||||++.|+|+--|.
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl~~p~ 107 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRFYDIS 107 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTSSCCS
T ss_pred EEEEECCCCchHHHHHHHHHcCCCCC
Confidence 47899999999999999999987663
No 281
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=87.97 E-value=0.14 Score=49.75 Aligned_cols=26 Identities=23% Similarity=0.399 Sum_probs=23.4
Q ss_pred CEEEEEeccCCchHHHHHHHhCCccc
Q 004351 25 PAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
+.+.|||..+||||||++.|+|+--|
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 67899999999999999999998654
No 282
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=87.74 E-value=0.2 Score=51.89 Aligned_cols=25 Identities=24% Similarity=0.480 Sum_probs=21.9
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
-++|+|..||||||+|.+|+|.--|
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~~~~ 51 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDYINQ 51 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHHhCCC
Confidence 3789999999999999999997544
No 283
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=87.59 E-value=0.25 Score=47.20 Aligned_cols=45 Identities=16% Similarity=0.200 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhhhhcCCCCC-CCEEEEEeccCCchHHHHHHHhCCccc
Q 004351 4 LYEAYNELHGLAQELETPFD-APAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 4 L~~~~n~L~~l~~~~~~~i~-lPqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.-++++.++.+...+. ++ -.-++++|..|+|||+|+.+|.|.-.|
T Consensus 19 ~~~~~~~~~~~~~~~~--~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 64 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFN--PEEGKGLTFVGSPGVGKTHLAVATLKAIYE 64 (180)
T ss_dssp HHHHHHHHHHHHHSCC--GGGCCEEEECCSSSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc--ccCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3456777777764321 11 234899999999999999999987654
No 284
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=87.54 E-value=0.22 Score=48.81 Aligned_cols=22 Identities=27% Similarity=0.611 Sum_probs=19.9
Q ss_pred CEEEEEeccCCchHHHHHHHhC
Q 004351 25 PAVLVVGHQTDGKSALVEALMG 46 (759)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G 46 (759)
.-|+++|..|||||||.+.|..
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999975
No 285
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=87.52 E-value=0.27 Score=53.50 Aligned_cols=25 Identities=28% Similarity=0.611 Sum_probs=22.8
Q ss_pred EEEEeccCCchHHHHHHHhCCccce
Q 004351 27 VLVVGHQTDGKSALVEALMGFQFNH 51 (759)
Q Consensus 27 IVVVG~QSsGKSSLLEAL~G~~fp~ 51 (759)
++++|..||||||||+.|.|+--|.
T Consensus 33 ~~llGpsGsGKSTLLr~iaGl~~p~ 57 (359)
T 3fvq_A 33 LFIIGASGCGKTTLLRCLAGFEQPD 57 (359)
T ss_dssp EEEEESTTSSHHHHHHHHHTSSCCS
T ss_pred EEEECCCCchHHHHHHHHhcCCCCC
Confidence 6799999999999999999998663
No 286
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=87.42 E-value=0.26 Score=53.46 Aligned_cols=25 Identities=20% Similarity=0.414 Sum_probs=22.7
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
-++++|..||||||||+.|+|+--|
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~~p 67 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLERP 67 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCC
Confidence 3789999999999999999999766
No 287
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=87.41 E-value=0.23 Score=46.87 Aligned_cols=22 Identities=27% Similarity=0.382 Sum_probs=20.2
Q ss_pred EEEEEeccCCchHHHHHHHhCC
Q 004351 26 AVLVVGHQTDGKSALVEALMGF 47 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~ 47 (759)
.|+++|..+||||||...|.+.
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 288
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=87.21 E-value=0.28 Score=53.44 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=22.3
Q ss_pred EEEEeccCCchHHHHHHHhCCccc
Q 004351 27 VLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 27 IVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
++++|..||||||||+.|+|+--|
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl~~p 55 (362)
T 2it1_A 32 MALLGPSGSGKSTLLYTIAGIYKP 55 (362)
T ss_dssp EEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEECCCCchHHHHHHHHhcCCCC
Confidence 679999999999999999999766
No 289
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=87.12 E-value=0.19 Score=53.48 Aligned_cols=23 Identities=30% Similarity=0.550 Sum_probs=21.2
Q ss_pred EEEEEeccCCchHHHHHHHhCCc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQ 48 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~ 48 (759)
.+++||..+||||||+..|+|+-
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhhc
Confidence 47899999999999999999975
No 290
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=87.08 E-value=0.28 Score=53.30 Aligned_cols=24 Identities=25% Similarity=0.295 Sum_probs=22.3
Q ss_pred EEEEeccCCchHHHHHHHhCCccc
Q 004351 27 VLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 27 IVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
++++|..||||||||+.|+|+--|
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl~~p 55 (359)
T 2yyz_A 32 VALLGPSGCGKTTTLLMLAGIYKP 55 (359)
T ss_dssp EEEECSTTSSHHHHHHHHHTSSCC
T ss_pred EEEEcCCCchHHHHHHHHHCCCCC
Confidence 679999999999999999999766
No 291
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=86.98 E-value=0.28 Score=46.86 Aligned_cols=20 Identities=25% Similarity=0.504 Sum_probs=17.9
Q ss_pred EEEEeccCCchHHHHHHHhC
Q 004351 27 VLVVGHQTDGKSALVEALMG 46 (759)
Q Consensus 27 IVVVG~QSsGKSSLLEAL~G 46 (759)
++++|..|||||||++.+.+
T Consensus 12 ~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 12 VVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp EEEECCTTSCHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHcc
Confidence 67899999999999998664
No 292
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=86.91 E-value=0.29 Score=48.12 Aligned_cols=33 Identities=21% Similarity=0.168 Sum_probs=24.7
Q ss_pred CCCCCE-EEEEeccCCchHHHHHHHhCCccceec
Q 004351 21 PFDAPA-VLVVGHQTDGKSALVEALMGFQFNHVG 53 (759)
Q Consensus 21 ~i~lPq-IVVVG~QSsGKSSLLEAL~G~~fp~~g 53 (759)
.++--+ ++++|..+||||+|+..|+|.-.++.+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~ 54 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPE 54 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGG
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccc
Confidence 344443 689999999999999999995444333
No 293
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=86.86 E-value=0.29 Score=53.39 Aligned_cols=24 Identities=17% Similarity=0.405 Sum_probs=22.4
Q ss_pred EEEEeccCCchHHHHHHHhCCccc
Q 004351 27 VLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 27 IVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
++++|..||||||||+.|.|+--|
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl~~p 55 (372)
T 1g29_1 32 MILLGPSGCGKTTTLRMIAGLEEP 55 (372)
T ss_dssp EEEECSTTSSHHHHHHHHHTSSCC
T ss_pred EEEECCCCcHHHHHHHHHHcCCCC
Confidence 789999999999999999999766
No 294
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=86.85 E-value=0.21 Score=49.90 Aligned_cols=22 Identities=14% Similarity=0.247 Sum_probs=14.9
Q ss_pred EEEEEeccCCchHHHHHHHh-CC
Q 004351 26 AVLVVGHQTDGKSALVEALM-GF 47 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~-G~ 47 (759)
-|+++|..+||||||++.|. |.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 47899999999999999999 87
No 295
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=86.59 E-value=0.31 Score=53.11 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=22.8
Q ss_pred EEEEeccCCchHHHHHHHhCCccce
Q 004351 27 VLVVGHQTDGKSALVEALMGFQFNH 51 (759)
Q Consensus 27 IVVVG~QSsGKSSLLEAL~G~~fp~ 51 (759)
+.++|..||||||||..|.|.--|.
T Consensus 57 ~~IiGpnGaGKSTLlr~i~GL~~p~ 81 (366)
T 3tui_C 57 YGVIGASGAGKSTLIRCVNLLERPT 81 (366)
T ss_dssp EEEECCTTSSHHHHHHHHHTSSCCS
T ss_pred EEEEcCCCchHHHHHHHHhcCCCCC
Confidence 7899999999999999999997663
No 296
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=86.53 E-value=0.31 Score=55.39 Aligned_cols=30 Identities=27% Similarity=0.440 Sum_probs=24.5
Q ss_pred EEEEeccCCchHHHHHHHhCCccceecCcccc
Q 004351 27 VLVVGHQTDGKSALVEALMGFQFNHVGGGTKT 58 (759)
Q Consensus 27 IVVVG~QSsGKSSLLEAL~G~~fp~~g~g~cT 58 (759)
|+|+|..||||||+|++|+|+- +| +.|.+|
T Consensus 263 i~I~GptGSGKTTlL~aL~~~i-~~-~~giit 292 (511)
T 2oap_1 263 AIVVGETASGKTTTLNAIMMFI-PP-DAKVVS 292 (511)
T ss_dssp EEEEESTTSSHHHHHHHHGGGS-CT-TCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHhhC-CC-CCCEEE
Confidence 8999999999999999999975 32 345544
No 297
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=86.49 E-value=0.32 Score=53.15 Aligned_cols=24 Identities=17% Similarity=0.394 Sum_probs=22.3
Q ss_pred EEEEeccCCchHHHHHHHhCCccc
Q 004351 27 VLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 27 IVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
++++|..||||||||+.|.|+--|
T Consensus 40 ~~llGpnGsGKSTLLr~iaGl~~p 63 (372)
T 1v43_A 40 LVLLGPSGCGKTTTLRMIAGLEEP 63 (372)
T ss_dssp EEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEECCCCChHHHHHHHHHcCCCC
Confidence 689999999999999999999766
No 298
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=86.48 E-value=0.25 Score=53.51 Aligned_cols=25 Identities=24% Similarity=0.549 Sum_probs=22.8
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
-++++|..||||||||+.|+|+--|
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~~p 52 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFHVP 52 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSSCC
T ss_pred EEEEECCCCccHHHHHHHHHcCCCC
Confidence 3789999999999999999999766
No 299
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=86.41 E-value=0.32 Score=52.69 Aligned_cols=26 Identities=35% Similarity=0.432 Sum_probs=21.9
Q ss_pred CCCCCEEEEEeccCCchHHHHHHHhC
Q 004351 21 PFDAPAVLVVGHQTDGKSALVEALMG 46 (759)
Q Consensus 21 ~i~lPqIVVVG~QSsGKSSLLEAL~G 46 (759)
.++-+-.+++|+.||||||+||||+.
T Consensus 20 ~~~~g~~~i~G~NGaGKTTll~ai~~ 45 (365)
T 3qf7_A 20 EFQSGITVVEGPNGAGKSSLFEAISF 45 (365)
T ss_dssp ECCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred ecCCCeEEEECCCCCCHHHHHHHHHH
Confidence 34445688999999999999999983
No 300
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=86.38 E-value=0.24 Score=49.66 Aligned_cols=22 Identities=23% Similarity=0.490 Sum_probs=20.6
Q ss_pred EEEEEeccCCchHHHHHHHhCC
Q 004351 26 AVLVVGHQTDGKSALVEALMGF 47 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~ 47 (759)
-|+++|..+|||||+++.|.|.
T Consensus 22 ~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 22 TVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEEECSTTSCHHHHHHTTGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 3889999999999999999997
No 301
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=86.28 E-value=0.28 Score=47.94 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=19.9
Q ss_pred EEEEEeccCCchHHHHHHHhCC
Q 004351 26 AVLVVGHQTDGKSALVEALMGF 47 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~ 47 (759)
-|+++|..|||||||++.|.|.
T Consensus 31 ~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 31 HVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5889999999999999999764
No 302
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=86.25 E-value=0.19 Score=54.45 Aligned_cols=25 Identities=36% Similarity=0.533 Sum_probs=22.3
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
-++|+|..||||||+|++|+|.--|
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~~~ 149 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYLNN 149 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhcccC
Confidence 4899999999999999999997544
No 303
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=86.22 E-value=0.28 Score=47.14 Aligned_cols=20 Identities=25% Similarity=0.365 Sum_probs=19.0
Q ss_pred EEEEeccCCchHHHHHHHhC
Q 004351 27 VLVVGHQTDGKSALVEALMG 46 (759)
Q Consensus 27 IVVVG~QSsGKSSLLEAL~G 46 (759)
|+++|..|||||||+..|.+
T Consensus 5 i~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 5 YIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHhc
Confidence 68999999999999999987
No 304
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=86.00 E-value=0.35 Score=53.03 Aligned_cols=25 Identities=32% Similarity=0.472 Sum_probs=22.8
Q ss_pred EEEEeccCCchHHHHHHHhCCccce
Q 004351 27 VLVVGHQTDGKSALVEALMGFQFNH 51 (759)
Q Consensus 27 IVVVG~QSsGKSSLLEAL~G~~fp~ 51 (759)
++++|..||||||||..|+|+--|.
T Consensus 32 ~~llGpsGsGKSTLLr~iaGl~~p~ 56 (381)
T 3rlf_A 32 VVFVGPSGCGKSTLLRMIAGLETIT 56 (381)
T ss_dssp EEEECCTTSSHHHHHHHHHTSSCCS
T ss_pred EEEEcCCCchHHHHHHHHHcCCCCC
Confidence 6899999999999999999998663
No 305
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=85.80 E-value=0.31 Score=46.17 Aligned_cols=21 Identities=24% Similarity=0.377 Sum_probs=19.3
Q ss_pred EEEEEeccCCchHHHHHHHhC
Q 004351 26 AVLVVGHQTDGKSALVEALMG 46 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G 46 (759)
-|+++|..|||||||...|.+
T Consensus 10 ~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999875
No 306
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=85.80 E-value=0.29 Score=52.54 Aligned_cols=27 Identities=30% Similarity=0.249 Sum_probs=23.2
Q ss_pred CCEEEEEeccCCchHHHHHHHhCCccc
Q 004351 24 APAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 24 lPqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
-..++++|..||||||||++|+|.-.|
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~g~~~~ 81 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALGSLLTA 81 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 356889999999999999999986544
No 307
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=85.52 E-value=0.31 Score=51.66 Aligned_cols=26 Identities=23% Similarity=0.390 Sum_probs=23.9
Q ss_pred CCCEEEEEeccCCchHHHHHHHhCCc
Q 004351 23 DAPAVLVVGHQTDGKSALVEALMGFQ 48 (759)
Q Consensus 23 ~lPqIVVVG~QSsGKSSLLEAL~G~~ 48 (759)
.+|-++|+|..||||||||+.|.|..
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 36889999999999999999999985
No 308
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=85.41 E-value=0.31 Score=51.80 Aligned_cols=29 Identities=24% Similarity=0.233 Sum_probs=23.8
Q ss_pred CCCCE-EEEEeccCCchHHHHHHHhCCccc
Q 004351 22 FDAPA-VLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 22 i~lPq-IVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
+.-+. |.++|.+|||||||++.|.|.--|
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 55565 678999999999999999997533
No 309
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=85.14 E-value=0.21 Score=49.25 Aligned_cols=35 Identities=26% Similarity=0.451 Sum_probs=25.1
Q ss_pred CEEEEEeccCCchHHHHHHHhCC-ccceecCccccc
Q 004351 25 PAVLVVGHQTDGKSALVEALMGF-QFNHVGGGTKTR 59 (759)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~-~fp~~g~g~cTR 59 (759)
+.|+++|..|||||||.+.|.+. .++..+.|...|
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 46999999999999999999753 333334444433
No 310
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=85.04 E-value=0.26 Score=53.40 Aligned_cols=25 Identities=16% Similarity=0.404 Sum_probs=22.6
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
-++++|..||||||||+.|+|+--|
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~~p 57 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLDVP 57 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCC
Confidence 3679999999999999999999766
No 311
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=84.81 E-value=0.37 Score=46.95 Aligned_cols=25 Identities=16% Similarity=0.254 Sum_probs=21.7
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
-|+++|..||||||+.+.|.+..++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~lg~~ 28 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDLGVP 28 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTTTCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCc
Confidence 5899999999999999999985444
No 312
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=84.77 E-value=0.43 Score=46.36 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=22.0
Q ss_pred CCEEEEEeccCCchHHHHHHHhCC
Q 004351 24 APAVLVVGHQTDGKSALVEALMGF 47 (759)
Q Consensus 24 lPqIVVVG~QSsGKSSLLEAL~G~ 47 (759)
.|.|+++|.++||||+|++.|++.
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 578999999999999999999873
No 313
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=84.35 E-value=0.46 Score=44.35 Aligned_cols=22 Identities=18% Similarity=0.172 Sum_probs=19.5
Q ss_pred CEEEEEeccCCchHHHHHHHhC
Q 004351 25 PAVLVVGHQTDGKSALVEALMG 46 (759)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G 46 (759)
.-|+++|..||||||+.+.|..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999863
No 314
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=84.35 E-value=0.38 Score=47.29 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=20.7
Q ss_pred EEEEEeccCCchHHHHHHHhCCc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQ 48 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~ 48 (759)
.++++|..++|||||+..|+|.-
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 47899999999999999999863
No 315
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=84.33 E-value=0.47 Score=52.14 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=21.3
Q ss_pred EEEEEeccCCchHHHHHHHhCCc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQ 48 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~ 48 (759)
-++++|..+|||||||..|+|+-
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTCS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 47899999999999999999985
No 316
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=84.27 E-value=0.52 Score=45.99 Aligned_cols=28 Identities=18% Similarity=0.222 Sum_probs=23.0
Q ss_pred CCCCCC-EEEEEeccCCchHHHHHHHhCC
Q 004351 20 TPFDAP-AVLVVGHQTDGKSALVEALMGF 47 (759)
Q Consensus 20 ~~i~lP-qIVVVG~QSsGKSSLLEAL~G~ 47 (759)
..+.-+ -|+++|..+||||||.+.|.+.
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 344545 4679999999999999999986
No 317
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=84.09 E-value=0.37 Score=51.89 Aligned_cols=25 Identities=32% Similarity=0.472 Sum_probs=22.5
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.++++|..|||||||++.|.|.--|
T Consensus 172 k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 172 TVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5899999999999999999998544
No 318
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=84.07 E-value=0.4 Score=46.75 Aligned_cols=23 Identities=35% Similarity=0.394 Sum_probs=20.5
Q ss_pred EEEEEeccCCchHHHHHHHhCCc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQ 48 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~ 48 (759)
-|+++|..|||||||..+|.|.-
T Consensus 27 ~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 27 VIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47889999999999999998864
No 319
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=84.05 E-value=0.52 Score=46.56 Aligned_cols=24 Identities=33% Similarity=0.703 Sum_probs=20.1
Q ss_pred CCCCEEEEEeccCCchHHHHHHHh
Q 004351 22 FDAPAVLVVGHQTDGKSALVEALM 45 (759)
Q Consensus 22 i~lPqIVVVG~QSsGKSSLLEAL~ 45 (759)
++-+-.+++|+.++||||+|+||.
T Consensus 21 f~~~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 21 FKEGINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHH
T ss_pred eCCCeEEEEcCCCCCHHHHHHHHH
Confidence 333467999999999999999985
No 320
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=83.92 E-value=0.47 Score=46.07 Aligned_cols=25 Identities=16% Similarity=0.186 Sum_probs=21.5
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.|+++|..+||||||.+.|.+..++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~~g~~ 27 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRELGAY 27 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHHTTCE
T ss_pred EEEEECCCCcCHHHHHHHHHHCCCE
Confidence 5899999999999999999984333
No 321
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=83.42 E-value=0.39 Score=53.90 Aligned_cols=26 Identities=31% Similarity=0.663 Sum_probs=24.3
Q ss_pred CEEEEEeccCCchHHHHHHHhCCccc
Q 004351 25 PAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
+.++++|..+||||||+..|+|.--|
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl~~p 164 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSYALK 164 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHTTHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCcccc
Confidence 67999999999999999999999866
No 322
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=83.36 E-value=0.59 Score=43.29 Aligned_cols=20 Identities=30% Similarity=0.539 Sum_probs=18.8
Q ss_pred CEEEEEeccCCchHHHHHHH
Q 004351 25 PAVLVVGHQTDGKSALVEAL 44 (759)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL 44 (759)
+-|+++|..||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 323
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=83.32 E-value=0.42 Score=52.95 Aligned_cols=25 Identities=28% Similarity=0.230 Sum_probs=21.8
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
-|+|+|..||||||+|.+|+|.--|
T Consensus 169 ii~I~GpnGSGKTTlL~allg~l~~ 193 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQELNS 193 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred eEEEECCCCCCHHHHHHHHHhhcCC
Confidence 3789999999999999999996433
No 324
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=83.24 E-value=0.45 Score=48.11 Aligned_cols=26 Identities=31% Similarity=0.414 Sum_probs=21.1
Q ss_pred CCCCE-EEEEeccCCchHHHHHHHhCC
Q 004351 22 FDAPA-VLVVGHQTDGKSALVEALMGF 47 (759)
Q Consensus 22 i~lPq-IVVVG~QSsGKSSLLEAL~G~ 47 (759)
+.-+. |.++|..+||||||++.|.|.
T Consensus 22 i~~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 22 SMRPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp -CCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34443 779999999999999999884
No 325
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=83.01 E-value=0.49 Score=46.27 Aligned_cols=26 Identities=19% Similarity=0.208 Sum_probs=21.5
Q ss_pred CCCC-EEEEEeccCCchHHHHHHHhCC
Q 004351 22 FDAP-AVLVVGHQTDGKSALVEALMGF 47 (759)
Q Consensus 22 i~lP-qIVVVG~QSsGKSSLLEAL~G~ 47 (759)
..-| -|+++|..+||||||++.|.|.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3334 4789999999999999999874
No 326
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=82.98 E-value=0.48 Score=49.96 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=21.4
Q ss_pred CCC-EEEEEeccCCchHHHHHHHhCC
Q 004351 23 DAP-AVLVVGHQTDGKSALVEALMGF 47 (759)
Q Consensus 23 ~lP-qIVVVG~QSsGKSSLLEAL~G~ 47 (759)
.-+ -|.++|..|||||||++.|.|.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 344 4778999999999999999996
No 327
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=82.80 E-value=0.46 Score=51.69 Aligned_cols=25 Identities=24% Similarity=0.480 Sum_probs=21.8
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
-++|+|..||||||+|.+|+|.--|
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~~~~~ 162 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMIDYINQ 162 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhhcCc
Confidence 3789999999999999999996433
No 328
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=82.61 E-value=0.53 Score=50.39 Aligned_cols=27 Identities=26% Similarity=0.300 Sum_probs=23.2
Q ss_pred CCCEEEEEeccCCchHHHHHHHhCCcc
Q 004351 23 DAPAVLVVGHQTDGKSALVEALMGFQF 49 (759)
Q Consensus 23 ~lPqIVVVG~QSsGKSSLLEAL~G~~f 49 (759)
..+.|+++|..|+||||++++|+|.-.
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~~ 81 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLLI 81 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 457899999999999999999987543
No 329
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=82.31 E-value=0.45 Score=44.73 Aligned_cols=28 Identities=25% Similarity=0.385 Sum_probs=24.0
Q ss_pred CCCEEEEEeccCCchHHHHHHHhCCccc
Q 004351 23 DAPAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 23 ~lPqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
+-.-++++|..++|||+|+.+|.|.-.+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4457999999999999999999996544
No 330
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=82.30 E-value=0.53 Score=50.23 Aligned_cols=22 Identities=32% Similarity=0.604 Sum_probs=19.0
Q ss_pred CEEEEEeccCCchHHHHHHHhC
Q 004351 25 PAVLVVGHQTDGKSALVEALMG 46 (759)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G 46 (759)
.-.+++|+.++|||++|+||..
T Consensus 24 ~~~~i~G~NGsGKS~lleAi~~ 45 (339)
T 3qkt_A 24 GINLIIGQNGSGKSSLLDAILV 45 (339)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999853
No 331
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=82.27 E-value=0.63 Score=53.17 Aligned_cols=25 Identities=36% Similarity=0.424 Sum_probs=22.5
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.++++|..||||||||..|+|.--|
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~~p 73 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQLIP 73 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3779999999999999999998656
No 332
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=82.10 E-value=0.61 Score=50.44 Aligned_cols=24 Identities=33% Similarity=0.664 Sum_probs=20.2
Q ss_pred CCCCEEEEEeccCCchHHHHHHHh
Q 004351 22 FDAPAVLVVGHQTDGKSALVEALM 45 (759)
Q Consensus 22 i~lPqIVVVG~QSsGKSSLLEAL~ 45 (759)
++-.-.|++|+.|||||++||||.
T Consensus 23 f~~gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 23 FEKGIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHH
T ss_pred cCCCeEEEECCCCCCHHHHHHHHH
Confidence 333567999999999999999985
No 333
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=81.67 E-value=0.57 Score=45.52 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=19.6
Q ss_pred CEEEEEeccCCchHHHHHHHhC
Q 004351 25 PAVLVVGHQTDGKSALVEALMG 46 (759)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G 46 (759)
.-|+++|..|||||||.+.|.+
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999864
No 334
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=81.37 E-value=0.29 Score=53.29 Aligned_cols=26 Identities=27% Similarity=0.192 Sum_probs=22.4
Q ss_pred CEEEEEeccCCchHHHHHHHhCCccc
Q 004351 25 PAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
..++++|..|||||+||++|.+.--+
T Consensus 61 G~~~lvG~NGaGKStLl~aI~~l~~~ 86 (415)
T 4aby_A 61 GFCAFTGETGAGKSIIVDALGLLLGG 86 (415)
T ss_dssp SEEEEEESHHHHHHHHTHHHHHHTTC
T ss_pred CcEEEECCCCCCHHHHHHHHHHHhCC
Confidence 37899999999999999999876543
No 335
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=81.36 E-value=0.7 Score=53.12 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=22.7
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.+++||..|||||||++.|.|.--|
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~~~p 395 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRFYDI 395 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTTCC
T ss_pred EEEEECCCCCCHHHHHHHHhhccCC
Confidence 3789999999999999999998755
No 336
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=81.33 E-value=0.75 Score=52.53 Aligned_cols=25 Identities=28% Similarity=0.418 Sum_probs=22.5
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.+.++|..||||||||++|+|.--|
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~~p 338 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVEEP 338 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4779999999999999999998755
No 337
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=81.05 E-value=0.78 Score=52.48 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=22.7
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
-++++|..||||||||++|+|.--|
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~~p 320 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEITA 320 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3689999999999999999998766
No 338
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=80.94 E-value=0.68 Score=53.27 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=22.5
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.+++||..|||||||++.|+|.--|
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~~p 395 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFYDV 395 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 3789999999999999999998755
No 339
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=80.84 E-value=1.5 Score=45.83 Aligned_cols=42 Identities=19% Similarity=0.332 Sum_probs=28.0
Q ss_pred cHHHHHHHHHHhhhhcCCC--CCCCE-EEEEeccCCchHHHHHHHhC
Q 004351 3 SLYEAYNELHGLAQELETP--FDAPA-VLVVGHQTDGKSALVEALMG 46 (759)
Q Consensus 3 ~L~~~~n~L~~l~~~~~~~--i~lPq-IVVVG~QSsGKSSLLEAL~G 46 (759)
++..+++++-.-. ++.. ..-|. ||++|..||||||+...|..
T Consensus 11 ~~~~~~~~~~~~~--l~~~~~~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 11 QFENRLNDNLEEL--IQGKKAVESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp HHHHHHHHHHHHH--HTTCCCCSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--hccccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4455555554443 3322 23353 78899999999999999964
No 340
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=80.84 E-value=0.6 Score=50.67 Aligned_cols=27 Identities=26% Similarity=0.271 Sum_probs=22.3
Q ss_pred CCCCEEEEEeccCCchHHHHHHHhCCc
Q 004351 22 FDAPAVLVVGHQTDGKSALVEALMGFQ 48 (759)
Q Consensus 22 i~lPqIVVVG~QSsGKSSLLEAL~G~~ 48 (759)
++-.-.+++|+.++|||++||||.+.-
T Consensus 24 ~~~g~~~i~G~nG~GKttll~ai~~~~ 50 (359)
T 2o5v_A 24 FPEGVTGIYGENGAGKTNLLEAAYLAL 50 (359)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EcCCeEEEECCCCCChhHHHHHHHHhc
Confidence 333457899999999999999999764
No 341
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=80.75 E-value=0.84 Score=43.80 Aligned_cols=21 Identities=19% Similarity=0.363 Sum_probs=19.4
Q ss_pred EEEEEeccCCchHHHHHHHhC
Q 004351 26 AVLVVGHQTDGKSALVEALMG 46 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G 46 (759)
.|+++|..||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999999976
No 342
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=80.74 E-value=0.76 Score=53.35 Aligned_cols=26 Identities=31% Similarity=0.414 Sum_probs=23.1
Q ss_pred EEEEEeccCCchHHHHHHHhCCccce
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFNH 51 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp~ 51 (759)
.+.++|..||||||||+.|+|.--|.
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll~p~ 144 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQLIPN 144 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCC
T ss_pred EEEEECCCCChHHHHHHHHhCCCCCC
Confidence 37899999999999999999987663
No 343
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=80.68 E-value=0.64 Score=46.19 Aligned_cols=24 Identities=21% Similarity=0.301 Sum_probs=20.4
Q ss_pred EEEEEeccCCchHHHHHHHhCCcc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQF 49 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~f 49 (759)
-++++|..|||||+|+..|++.-+
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~~~~~ 55 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFIYKGA 55 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999995443
No 344
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=80.58 E-value=0.82 Score=53.06 Aligned_cols=25 Identities=28% Similarity=0.418 Sum_probs=22.6
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.++++|..||||||||..|+|.--|
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~~p 408 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVEEP 408 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4789999999999999999998765
No 345
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=80.48 E-value=0.84 Score=43.36 Aligned_cols=27 Identities=30% Similarity=0.576 Sum_probs=23.0
Q ss_pred CCEEEEEeccCCchHHHHHHHh---CCccc
Q 004351 24 APAVLVVGHQTDGKSALVEALM---GFQFN 50 (759)
Q Consensus 24 lPqIVVVG~QSsGKSSLLEAL~---G~~fp 50 (759)
.+-|+++|..+||||++...|. |.++.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~~ 40 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGLKYI 40 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCCEEE
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCeEE
Confidence 4569999999999999999998 66654
No 346
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=80.39 E-value=0.56 Score=45.67 Aligned_cols=21 Identities=38% Similarity=0.572 Sum_probs=19.3
Q ss_pred EEEEEeccCCchHHHHHHHhC
Q 004351 26 AVLVVGHQTDGKSALVEALMG 46 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G 46 (759)
-|+|+|..||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 389999999999999999986
No 347
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=80.29 E-value=0.82 Score=52.30 Aligned_cols=30 Identities=23% Similarity=0.376 Sum_probs=25.2
Q ss_pred CCCCC----EEEEEeccCCchHHHHHHHhCCccc
Q 004351 21 PFDAP----AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 21 ~i~lP----qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.++.| -+.++|..||||||||+.|+|.--|
T Consensus 18 ~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p 51 (538)
T 3ozx_A 18 GLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIP 51 (538)
T ss_dssp CCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 34555 3789999999999999999998766
No 348
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=80.26 E-value=0.87 Score=43.28 Aligned_cols=25 Identities=32% Similarity=0.473 Sum_probs=21.2
Q ss_pred EEEEEeccCCchHHHHHHHh---CCccc
Q 004351 26 AVLVVGHQTDGKSALVEALM---GFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~---G~~fp 50 (759)
-|+++|..+|||||+.+.|. |.++.
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l~~~~i 33 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQELGFKKL 33 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 48999999999999999997 65543
No 349
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=80.25 E-value=0.94 Score=45.63 Aligned_cols=26 Identities=38% Similarity=0.511 Sum_probs=21.9
Q ss_pred CCCC-EEEEEeccCCchHHHHHHHhCC
Q 004351 22 FDAP-AVLVVGHQTDGKSALVEALMGF 47 (759)
Q Consensus 22 i~lP-qIVVVG~QSsGKSSLLEAL~G~ 47 (759)
+.+| -++++|..|+|||+|+.+|.|.
T Consensus 46 ~~~~~g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 46 ARIPKGVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp CCCCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3444 3999999999999999999974
No 350
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=80.23 E-value=0.81 Score=53.12 Aligned_cols=25 Identities=32% Similarity=0.315 Sum_probs=23.0
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
-+.++|..||||||||+.|+|.--|
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll~P 129 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQKP 129 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEECCCCChHHHHHHHHhcCCCC
Confidence 4789999999999999999998766
No 351
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=80.20 E-value=0.7 Score=53.32 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=22.5
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.+++||..|||||||++.|+|.--|
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~~~p 396 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRLYDP 396 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCcCC
Confidence 3789999999999999999998655
No 352
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=80.11 E-value=0.84 Score=48.26 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=20.6
Q ss_pred CEEEEEeccCCchHHHHHHHhCC
Q 004351 25 PAVLVVGHQTDGKSALVEALMGF 47 (759)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~ 47 (759)
.-.+++|+.+||||+||+||...
T Consensus 25 g~~~i~G~NGsGKS~ll~ai~~l 47 (322)
T 1e69_A 25 RVTAIVGPNGSGKSNIIDAIKWV 47 (322)
T ss_dssp SEEEEECCTTTCSTHHHHHHHHT
T ss_pred CcEEEECCCCCcHHHHHHHHHHH
Confidence 46899999999999999999854
No 353
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=80.04 E-value=1 Score=42.78 Aligned_cols=26 Identities=15% Similarity=0.244 Sum_probs=21.9
Q ss_pred CCEEEEEeccCCchHHHHHHHh---CCcc
Q 004351 24 APAVLVVGHQTDGKSALVEALM---GFQF 49 (759)
Q Consensus 24 lPqIVVVG~QSsGKSSLLEAL~---G~~f 49 (759)
.+.|+++|..+|||||+-..|. |.+|
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~ 33 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRIL 33 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 3579999999999999999995 5554
No 354
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=80.01 E-value=1.4 Score=46.94 Aligned_cols=40 Identities=18% Similarity=0.228 Sum_probs=27.2
Q ss_pred HHHHHHhhhhc-CC-CCCCC-EEEEEeccCCchHHHHHHHhCC
Q 004351 8 YNELHGLAQEL-ET-PFDAP-AVLVVGHQTDGKSALVEALMGF 47 (759)
Q Consensus 8 ~n~L~~l~~~~-~~-~i~lP-qIVVVG~QSsGKSSLLEAL~G~ 47 (759)
...|+.+...+ +. .-.-| -|.++|.+|||||||++.|.|.
T Consensus 73 ~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 73 RQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp HHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34455444443 22 12334 4889999999999999999875
No 355
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=80.01 E-value=0.87 Score=43.19 Aligned_cols=21 Identities=24% Similarity=0.283 Sum_probs=19.2
Q ss_pred EEEEEeccCCchHHHHHHHhC
Q 004351 26 AVLVVGHQTDGKSALVEALMG 46 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G 46 (759)
-|+++|..||||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999865
No 356
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=80.00 E-value=0.56 Score=53.01 Aligned_cols=25 Identities=16% Similarity=0.218 Sum_probs=22.4
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
-++++|..||||||||.+|+|.--|
T Consensus 31 ~~~liG~nGsGKSTLl~~l~Gl~~p 55 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVTALIP 55 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred eEEEECCCCCcHHHHHHHHhcCCCC
Confidence 3788999999999999999998655
No 357
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=79.97 E-value=0.84 Score=42.85 Aligned_cols=21 Identities=24% Similarity=0.498 Sum_probs=19.2
Q ss_pred EEEEEeccCCchHHHHHHHhC
Q 004351 26 AVLVVGHQTDGKSALVEALMG 46 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G 46 (759)
-|+++|..+|||||+.+.|..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 488999999999999999975
No 358
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=79.92 E-value=0.74 Score=53.17 Aligned_cols=26 Identities=35% Similarity=0.462 Sum_probs=23.4
Q ss_pred EEEEEeccCCchHHHHHHHhCCccce
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFNH 51 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp~ 51 (759)
.+++||..|||||||++.|.|.-=|.
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~~~p~ 408 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRFYDVD 408 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTSSCCS
T ss_pred EEEEECCCCCcHHHHHHHHhcCcCCC
Confidence 47899999999999999999987663
No 359
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=79.66 E-value=1.1 Score=50.17 Aligned_cols=20 Identities=40% Similarity=0.534 Sum_probs=17.6
Q ss_pred EEEEEeccCCchHHHHHHHh
Q 004351 26 AVLVVGHQTDGKSALVEALM 45 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~ 45 (759)
-|.|+|.+++|||.|||.|+
T Consensus 69 vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 69 AVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp EEEEEEBTTSSHHHHHHHHH
T ss_pred EEEEECCCCCchhHHHHHHH
Confidence 46689999999999999775
No 360
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=79.64 E-value=0.68 Score=50.97 Aligned_cols=25 Identities=20% Similarity=0.214 Sum_probs=22.4
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
-.+++|..++|||+||+||.|.-.+
T Consensus 28 ~~~i~G~nG~GKstll~ai~~~~~~ 52 (430)
T 1w1w_A 28 FTSIIGPNGSGKSNMMDAISFVLGV 52 (430)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHhhhcc
Confidence 5799999999999999999997654
No 361
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=79.43 E-value=0.89 Score=43.12 Aligned_cols=21 Identities=24% Similarity=0.295 Sum_probs=19.2
Q ss_pred EEEEEeccCCchHHHHHHHhC
Q 004351 26 AVLVVGHQTDGKSALVEALMG 46 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G 46 (759)
-|+++|..||||||+.+.|..
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 362
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=78.98 E-value=0.71 Score=53.09 Aligned_cols=26 Identities=31% Similarity=0.359 Sum_probs=23.1
Q ss_pred EEEEEeccCCchHHHHHHHhCCccce
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFNH 51 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp~ 51 (759)
.+++||..|||||||++.|.|.-=|.
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~~~p~ 394 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRFYDVT 394 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTSSCCS
T ss_pred EEEEECCCCChHHHHHHHHhcCCCCC
Confidence 47899999999999999999987663
No 363
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=78.98 E-value=0.79 Score=44.57 Aligned_cols=21 Identities=24% Similarity=0.395 Sum_probs=19.4
Q ss_pred EEEEEeccCCchHHHHHHHhC
Q 004351 26 AVLVVGHQTDGKSALVEALMG 46 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G 46 (759)
.|+++|..|||||||..+|.+
T Consensus 27 ~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999999973
No 364
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=78.96 E-value=0.94 Score=42.70 Aligned_cols=21 Identities=29% Similarity=0.547 Sum_probs=19.1
Q ss_pred EEEEEeccCCchHHHHHHHhC
Q 004351 26 AVLVVGHQTDGKSALVEALMG 46 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G 46 (759)
-|+++|-.||||||+..+|..
T Consensus 5 ~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999875
No 365
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=78.83 E-value=0.25 Score=50.28 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=21.7
Q ss_pred EEEEeccCCchHHHHHHHhCCccc
Q 004351 27 VLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 27 IVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
++++|+.+|||||||.+|.|.-.|
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~~~ 53 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTALIP 53 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhccccc
Confidence 467899999999999999998776
No 366
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=78.82 E-value=1.1 Score=45.93 Aligned_cols=22 Identities=41% Similarity=0.540 Sum_probs=20.4
Q ss_pred EEEEEeccCCchHHHHHHHhCC
Q 004351 26 AVLVVGHQTDGKSALVEALMGF 47 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~ 47 (759)
-++++|..|+|||+|+.+|.|.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 3999999999999999999984
No 367
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=78.59 E-value=1.9 Score=45.10 Aligned_cols=23 Identities=22% Similarity=0.223 Sum_probs=20.4
Q ss_pred EEEEEeccCCchHHHHHHHhCCc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQ 48 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~ 48 (759)
-|.|+|.++||||||.+.|.+.-
T Consensus 33 ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998854
No 368
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=78.54 E-value=0.8 Score=48.37 Aligned_cols=26 Identities=31% Similarity=0.446 Sum_probs=22.4
Q ss_pred CE-EEEEeccCCchHHHHHHHhCCccc
Q 004351 25 PA-VLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 25 Pq-IVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
|+ +++||.+||||||++..|.|.--|
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 44 679999999999999999998544
No 369
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=78.41 E-value=0.53 Score=45.32 Aligned_cols=34 Identities=24% Similarity=0.434 Sum_probs=24.7
Q ss_pred CEEEEEeccCCchHHHHHHHhCC--ccceecCcccc
Q 004351 25 PAVLVVGHQTDGKSALVEALMGF--QFNHVGGGTKT 58 (759)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~--~fp~~g~g~cT 58 (759)
+.|+++|..+|||||+.+.|... .++..+.+...
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~~ 46 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLV 46 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHHH
Confidence 46999999999999999998654 34434444333
No 370
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=78.32 E-value=0.83 Score=52.68 Aligned_cols=25 Identities=28% Similarity=0.329 Sum_probs=22.7
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.+++||..|||||||++.|.|+-=|
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~~~ 395 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRLIDP 395 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCccC
Confidence 4789999999999999999998755
No 371
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=78.24 E-value=2.6 Score=40.63 Aligned_cols=43 Identities=19% Similarity=0.135 Sum_probs=30.0
Q ss_pred HHHHHHHHhhhhcCCCCCCCEEEEEeccCCchHHHHHHHhCCc
Q 004351 6 EAYNELHGLAQELETPFDAPAVLVVGHQTDGKSALVEALMGFQ 48 (759)
Q Consensus 6 ~~~n~L~~l~~~~~~~i~lPqIVVVG~QSsGKSSLLEAL~G~~ 48 (759)
+++..++...........-+-|++.|..|+|||+|+.+|...-
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 36 KAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp HHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4566666665433222222579999999999999999998643
No 372
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=78.13 E-value=1.1 Score=42.76 Aligned_cols=20 Identities=40% Similarity=0.723 Sum_probs=18.3
Q ss_pred EEEEEeccCCchHHHHHHHh
Q 004351 26 AVLVVGHQTDGKSALVEALM 45 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~ 45 (759)
-|+++|..||||||+.+.|.
T Consensus 7 ~I~l~G~~GsGKST~~~~L~ 26 (193)
T 2rhm_A 7 LIIVTGHPATGKTTLSQALA 26 (193)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48999999999999999985
No 373
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=78.00 E-value=1 Score=43.36 Aligned_cols=22 Identities=18% Similarity=0.299 Sum_probs=20.0
Q ss_pred EEEEEeccCCchHHHHHHHhCC
Q 004351 26 AVLVVGHQTDGKSALVEALMGF 47 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~ 47 (759)
-||++|..||||||+.+.|...
T Consensus 6 ~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 6 LIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp EEEEECCTTSSHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999854
No 374
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=77.98 E-value=1.1 Score=42.56 Aligned_cols=25 Identities=32% Similarity=0.549 Sum_probs=21.1
Q ss_pred CEEEEEeccCCchHHHHHHHh---CCcc
Q 004351 25 PAVLVVGHQTDGKSALVEALM---GFQF 49 (759)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~---G~~f 49 (759)
|.|+++|..+||||++-..|. |+++
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~ 30 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGL 30 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCE
Confidence 569999999999999988884 5554
No 375
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=77.85 E-value=0.91 Score=43.14 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=19.7
Q ss_pred EEEEEeccCCchHHHHHHHhCC
Q 004351 26 AVLVVGHQTDGKSALVEALMGF 47 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~ 47 (759)
-|+++|..+|||||+...|.+.
T Consensus 7 ~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999864
No 376
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=77.05 E-value=1.1 Score=42.70 Aligned_cols=21 Identities=24% Similarity=0.308 Sum_probs=19.0
Q ss_pred EEEEEeccCCchHHHHHHHhC
Q 004351 26 AVLVVGHQTDGKSALVEALMG 46 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G 46 (759)
-|++.|..+|||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999999874
No 377
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=76.93 E-value=1.1 Score=43.09 Aligned_cols=21 Identities=24% Similarity=0.265 Sum_probs=19.4
Q ss_pred EEEEEeccCCchHHHHHHHhC
Q 004351 26 AVLVVGHQTDGKSALVEALMG 46 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G 46 (759)
-|+++|..||||||+.+.|..
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999975
No 378
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=76.63 E-value=1.2 Score=45.03 Aligned_cols=22 Identities=41% Similarity=0.602 Sum_probs=20.2
Q ss_pred EEEEEeccCCchHHHHHHHhCC
Q 004351 26 AVLVVGHQTDGKSALVEALMGF 47 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~ 47 (759)
-++++|..|+|||+++.+|.+.
T Consensus 47 ~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 4999999999999999999874
No 379
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=76.52 E-value=1.3 Score=51.49 Aligned_cols=27 Identities=26% Similarity=0.486 Sum_probs=23.6
Q ss_pred EEEEeccCCchHHHHHHHhCCccceec
Q 004351 27 VLVVGHQTDGKSALVEALMGFQFNHVG 53 (759)
Q Consensus 27 IVVVG~QSsGKSSLLEAL~G~~fp~~g 53 (759)
++++|..||||||||+.|+|.--|..|
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~~p~~G 407 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGALKPDEG 407 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSSCCSBC
T ss_pred EEEECCCCCcHHHHHHHHhcCCCCCCC
Confidence 689999999999999999999866433
No 380
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=76.35 E-value=2 Score=40.95 Aligned_cols=37 Identities=27% Similarity=0.343 Sum_probs=26.4
Q ss_pred HHHHHHHhhhhcCCCCCCCEEEEEeccCCchHHHHHHHhCC
Q 004351 7 AYNELHGLAQELETPFDAPAVLVVGHQTDGKSALVEALMGF 47 (759)
Q Consensus 7 ~~n~L~~l~~~~~~~i~lPqIVVVG~QSsGKSSLLEAL~G~ 47 (759)
.+++|+..... -..|.+++.|..|+|||+++.++...
T Consensus 25 ~~~~l~~~l~~----~~~~~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 25 VIQRLKGYVER----KNIPHLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp HHHHHHHHHHT----TCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhC----CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 44555555421 13445999999999999999999753
No 381
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=76.18 E-value=1.3 Score=42.96 Aligned_cols=21 Identities=24% Similarity=0.373 Sum_probs=19.3
Q ss_pred EEEEEeccCCchHHHHHHHhC
Q 004351 26 AVLVVGHQTDGKSALVEALMG 46 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G 46 (759)
-|+++|..||||||+.+.|..
T Consensus 11 ~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 11 LIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999974
No 382
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=75.73 E-value=1.1 Score=43.68 Aligned_cols=25 Identities=12% Similarity=0.242 Sum_probs=21.2
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
-++++|..|+|||+|+..|+|.-.+
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~~~~ 49 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAKGLR 49 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3678999999999999999976544
No 383
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=75.54 E-value=1.4 Score=42.74 Aligned_cols=21 Identities=24% Similarity=0.343 Sum_probs=19.3
Q ss_pred EEEEEeccCCchHHHHHHHhC
Q 004351 26 AVLVVGHQTDGKSALVEALMG 46 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G 46 (759)
-|+++|..||||||+.+.|..
T Consensus 12 ~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 12 FIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999974
No 384
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=75.46 E-value=2.8 Score=40.86 Aligned_cols=38 Identities=21% Similarity=0.277 Sum_probs=28.6
Q ss_pred HHHHHHHHhhhhcCCCCCCCEEEEEeccCCchHHHHHHHhCC
Q 004351 6 EAYNELHGLAQELETPFDAPAVLVVGHQTDGKSALVEALMGF 47 (759)
Q Consensus 6 ~~~n~L~~l~~~~~~~i~lPqIVVVG~QSsGKSSLLEAL~G~ 47 (759)
++++.|+.+... . .-+-++++|..|+|||+++.+|...
T Consensus 38 ~~~~~l~~~~~~---~-~~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 38 ELIGALKSAASG---D-GVQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp HHHHHHHHHHHT---C-SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC---C-CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 455666666521 1 4578999999999999999999764
No 385
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=75.41 E-value=1.2 Score=42.67 Aligned_cols=22 Identities=23% Similarity=0.425 Sum_probs=19.9
Q ss_pred EEEEEeccCCchHHHHHHHhCC
Q 004351 26 AVLVVGHQTDGKSALVEALMGF 47 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~ 47 (759)
-|+++|..+|||||+...|.+.
T Consensus 15 ~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 15 VVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999764
No 386
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=75.27 E-value=1.4 Score=41.70 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=19.6
Q ss_pred CEEEEEeccCCchHHHHHHHhC
Q 004351 25 PAVLVVGHQTDGKSALVEALMG 46 (759)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G 46 (759)
+.|+++|..+|||||+-..|..
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4699999999999999999863
No 387
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=75.18 E-value=1.3 Score=43.58 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=19.9
Q ss_pred EEEEEeccCCchHHHHHHHhCC
Q 004351 26 AVLVVGHQTDGKSALVEALMGF 47 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~ 47 (759)
-|+++|..+|||||+.+.|.+.
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~l 27 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFADL 27 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHc
Confidence 5899999999999999999863
No 388
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=75.16 E-value=3.2 Score=38.49 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=20.7
Q ss_pred CCEEEEEeccCCchHHHHHHHhCC
Q 004351 24 APAVLVVGHQTDGKSALVEALMGF 47 (759)
Q Consensus 24 lPqIVVVG~QSsGKSSLLEAL~G~ 47 (759)
-+.++++|..|+|||+++.++...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999998764
No 389
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=75.09 E-value=1.6 Score=41.57 Aligned_cols=21 Identities=29% Similarity=0.499 Sum_probs=19.3
Q ss_pred CEEEEEeccCCchHHHHHHHh
Q 004351 25 PAVLVVGHQTDGKSALVEALM 45 (759)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~ 45 (759)
+-|+++|..+|||||+.+.|.
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La 30 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIV 30 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999986
No 390
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=74.59 E-value=1.5 Score=41.70 Aligned_cols=21 Identities=19% Similarity=0.284 Sum_probs=18.8
Q ss_pred EEEEEeccCCchHHHHHHHhC
Q 004351 26 AVLVVGHQTDGKSALVEALMG 46 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G 46 (759)
-|+++|..||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999999864
No 391
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=74.25 E-value=1.6 Score=42.65 Aligned_cols=20 Identities=20% Similarity=0.486 Sum_probs=18.3
Q ss_pred EEEEEeccCCchHHHHHHHh
Q 004351 26 AVLVVGHQTDGKSALVEALM 45 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~ 45 (759)
.|+++|..+|||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48999999999999999984
No 392
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=73.50 E-value=1.4 Score=41.63 Aligned_cols=20 Identities=20% Similarity=0.242 Sum_probs=14.6
Q ss_pred EEEEEeccCCchHHHHHHHh
Q 004351 26 AVLVVGHQTDGKSALVEALM 45 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~ 45 (759)
-|+++|..+|||||+.+.|.
T Consensus 7 ~I~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 7 IIWINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp EEEEECCC----CHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999986
No 393
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=73.21 E-value=1.4 Score=45.53 Aligned_cols=25 Identities=20% Similarity=0.082 Sum_probs=22.1
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
-++++|..|+|||+|+..|+|.--|
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~~~~ 61 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQWGT 61 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 3789999999999999999997655
No 394
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=73.04 E-value=1.1 Score=54.76 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=23.3
Q ss_pred EEEEEeccCCchHHHHHHHhCCccce
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFNH 51 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp~ 51 (759)
.++++|..||||||||+.|+|.--|.
T Consensus 701 ivaIiGpNGSGKSTLLklLaGll~P~ 726 (986)
T 2iw3_A 701 RIAVIGPNGAGKSTLINVLTGELLPT 726 (986)
T ss_dssp EEEECSCCCHHHHHHHHHHTTSSCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 47899999999999999999987663
No 395
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=73.02 E-value=1.8 Score=42.37 Aligned_cols=34 Identities=21% Similarity=0.419 Sum_probs=23.5
Q ss_pred EEEEEeccCCchHHHHHHHhC-CccceecCccccc
Q 004351 26 AVLVVGHQTDGKSALVEALMG-FQFNHVGGGTKTR 59 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G-~~fp~~g~g~cTR 59 (759)
.|+++|..+|||||+.+.|.. ..++..+.+-.+|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r 36 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFR 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHH
Confidence 489999999999999999942 3333333333333
No 396
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=72.57 E-value=1.8 Score=40.88 Aligned_cols=20 Identities=25% Similarity=0.474 Sum_probs=18.5
Q ss_pred EEEEEeccCCchHHHHHHHh
Q 004351 26 AVLVVGHQTDGKSALVEALM 45 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~ 45 (759)
-|+++|..+|||||+.+.|.
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~ 27 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIV 27 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999885
No 397
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=72.52 E-value=1.7 Score=40.50 Aligned_cols=25 Identities=24% Similarity=0.571 Sum_probs=20.8
Q ss_pred CEEEEEeccCCchHHHHHHHh---CCcc
Q 004351 25 PAVLVVGHQTDGKSALVEALM---GFQF 49 (759)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~---G~~f 49 (759)
+.|+++|..+|||||+.+.|. |+++
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~ 30 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEF 30 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcE
Confidence 459999999999999998885 5544
No 398
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=72.23 E-value=1.8 Score=40.28 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=18.7
Q ss_pred EEEEEeccCCchHHHHHHHhC
Q 004351 26 AVLVVGHQTDGKSALVEALMG 46 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G 46 (759)
.|+++|..+|||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998853
No 399
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=72.21 E-value=1.8 Score=40.99 Aligned_cols=20 Identities=25% Similarity=0.456 Sum_probs=18.2
Q ss_pred EEEEEeccCCchHHHHHHHh
Q 004351 26 AVLVVGHQTDGKSALVEALM 45 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~ 45 (759)
-|+++|..+|||||+.+.|.
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIV 24 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999998885
No 400
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=72.03 E-value=2.1 Score=40.84 Aligned_cols=22 Identities=23% Similarity=0.478 Sum_probs=19.5
Q ss_pred CEEEEEeccCCchHHHHHHHhC
Q 004351 25 PAVLVVGHQTDGKSALVEALMG 46 (759)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G 46 (759)
+-|+++|..+|||||+...|..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998864
No 401
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=71.69 E-value=2.4 Score=39.67 Aligned_cols=28 Identities=21% Similarity=0.407 Sum_probs=21.4
Q ss_pred CCCCEEEEEeccCCchHHHHHHHh---CCcc
Q 004351 22 FDAPAVLVVGHQTDGKSALVEALM---GFQF 49 (759)
Q Consensus 22 i~lPqIVVVG~QSsGKSSLLEAL~---G~~f 49 (759)
-..--|+++|..+|||||+-..|. |++|
T Consensus 5 ~~~~~i~l~G~~GsGKSTva~~La~~lg~~~ 35 (168)
T 1zuh_A 5 HHMQHLVLIGFMGSGKSSLAQELGLALKLEV 35 (168)
T ss_dssp ---CEEEEESCTTSSHHHHHHHHHHHHTCCE
T ss_pred cccceEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 345679999999999999999884 5554
No 402
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=71.67 E-value=2 Score=41.23 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=20.0
Q ss_pred EEEEEeccCCchHHHHHHHhCC
Q 004351 26 AVLVVGHQTDGKSALVEALMGF 47 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~ 47 (759)
-|+++|..+|||||+.+.|...
T Consensus 10 ~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 5889999999999999999865
No 403
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=71.63 E-value=3.2 Score=43.10 Aligned_cols=22 Identities=32% Similarity=0.605 Sum_probs=20.4
Q ss_pred CEEEEEeccCCchHHHHHHHhC
Q 004351 25 PAVLVVGHQTDGKSALVEALMG 46 (759)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G 46 (759)
|-++|.|..++|||+|+..+..
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~ 52 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGIN 52 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 7899999999999999999874
No 404
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=71.58 E-value=1.8 Score=41.64 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=19.6
Q ss_pred CEEEEEeccCCchHHHHHHHhC
Q 004351 25 PAVLVVGHQTDGKSALVEALMG 46 (759)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G 46 (759)
|-|.+.|..+||||||.+.|.+
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999854
No 405
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=71.52 E-value=2.3 Score=43.93 Aligned_cols=26 Identities=35% Similarity=0.455 Sum_probs=22.3
Q ss_pred CCCCE-EEEEeccCCchHHHHHHHhCC
Q 004351 22 FDAPA-VLVVGHQTDGKSALVEALMGF 47 (759)
Q Consensus 22 i~lPq-IVVVG~QSsGKSSLLEAL~G~ 47 (759)
+.+|. +.++|..|+|||+|+++|.|.
T Consensus 41 l~~~~GvlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 41 LVTPAGVLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp CCCCSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 44443 999999999999999999985
No 406
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=71.00 E-value=2.1 Score=42.77 Aligned_cols=27 Identities=19% Similarity=0.399 Sum_probs=22.2
Q ss_pred CCEEEEEeccCCchHHHHHHHhC---Cccc
Q 004351 24 APAVLVVGHQTDGKSALVEALMG---FQFN 50 (759)
Q Consensus 24 lPqIVVVG~QSsGKSSLLEAL~G---~~fp 50 (759)
-..|+++|..+|||||+.+.|.+ ++++
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~lg~~~~ 45 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKDFGFTYL 45 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHHHCCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcee
Confidence 34689999999999999999974 5554
No 407
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=70.90 E-value=3.6 Score=46.84 Aligned_cols=46 Identities=17% Similarity=0.274 Sum_probs=33.3
Q ss_pred ccHHHHHHHHHHhhhhcCCCCCCCEEEEEeccCCchHHHHHHHhCCc
Q 004351 2 HSLYEAYNELHGLAQELETPFDAPAVLVVGHQTDGKSALVEALMGFQ 48 (759)
Q Consensus 2 ~~L~~~~n~L~~l~~~~~~~i~lPqIVVVG~QSsGKSSLLEAL~G~~ 48 (759)
+++...|.+...+. .++..++-+-++++|+.|+|||+|+.+|.+.-
T Consensus 87 ~~vk~~i~~~~~l~-~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 87 EKVKERILEYLAVQ-KLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp HHHHHHHHHHHHHH-HHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HhcccCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 34455555544443 24556677789999999999999999998754
No 408
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=70.79 E-value=1.6 Score=45.91 Aligned_cols=26 Identities=31% Similarity=0.394 Sum_probs=22.9
Q ss_pred CCCCEEEEEeccCCchHHHHHHHhCC
Q 004351 22 FDAPAVLVVGHQTDGKSALVEALMGF 47 (759)
Q Consensus 22 i~lPqIVVVG~QSsGKSSLLEAL~G~ 47 (759)
-..|.++++|..|+||||++.+|.|.
T Consensus 34 ~~~~~~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 34 RDLPHLLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp TCCCCEEEECSTTSSHHHHHHTHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 35667999999999999999999993
No 409
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=70.46 E-value=2.7 Score=44.40 Aligned_cols=28 Identities=25% Similarity=0.380 Sum_probs=24.1
Q ss_pred CCCEEEEEeccCCchHHHHHHHhCCccc
Q 004351 23 DAPAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 23 ~lPqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.+|.+++.|+.|+|||+++.+|.+.=.+
T Consensus 45 ~~~~~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 45 KLPHLLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp CCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 4577999999999999999999986543
No 410
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=70.46 E-value=1.8 Score=42.48 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=19.7
Q ss_pred EEEEEeccCCchHHHHHHHhCC
Q 004351 26 AVLVVGHQTDGKSALVEALMGF 47 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~ 47 (759)
-|+++|..||||||+...|.+.
T Consensus 27 ~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 27 TIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999764
No 411
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=70.41 E-value=1.8 Score=45.85 Aligned_cols=25 Identities=24% Similarity=0.243 Sum_probs=22.0
Q ss_pred CCCEEEEEeccCCchHHHHHHHhCC
Q 004351 23 DAPAVLVVGHQTDGKSALVEALMGF 47 (759)
Q Consensus 23 ~lPqIVVVG~QSsGKSSLLEAL~G~ 47 (759)
..+.++++|..|+|||+|+.+|.|.
T Consensus 50 ~~~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 50 VLDHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCCCEEEESSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3456999999999999999999885
No 412
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=70.35 E-value=1.7 Score=44.54 Aligned_cols=23 Identities=17% Similarity=0.336 Sum_probs=20.3
Q ss_pred CCEEEEEeccCCchHHHHHHHhC
Q 004351 24 APAVLVVGHQTDGKSALVEALMG 46 (759)
Q Consensus 24 lPqIVVVG~QSsGKSSLLEAL~G 46 (759)
-..|+++|..+||||||.+.|.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35699999999999999999965
No 413
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=70.06 E-value=3.1 Score=42.12 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=21.4
Q ss_pred CCCCC-EEEEEeccCCchHHHHHHHhC
Q 004351 21 PFDAP-AVLVVGHQTDGKSALVEALMG 46 (759)
Q Consensus 21 ~i~lP-qIVVVG~QSsGKSSLLEAL~G 46 (759)
...-| .|+++|..||||||+...|.+
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44445 478999999999999999875
No 414
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=70.05 E-value=2.2 Score=42.01 Aligned_cols=21 Identities=24% Similarity=0.403 Sum_probs=19.0
Q ss_pred CEEEEEeccCCchHHHHHHHh
Q 004351 25 PAVLVVGHQTDGKSALVEALM 45 (759)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~ 45 (759)
..|+++|..+|||||+.+.|.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La 26 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIK 26 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 359999999999999999986
No 415
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=70.03 E-value=1.7 Score=47.38 Aligned_cols=28 Identities=25% Similarity=0.294 Sum_probs=23.2
Q ss_pred CCCCCC-EEEEEeccCCchHHHHHHHhCC
Q 004351 20 TPFDAP-AVLVVGHQTDGKSALVEALMGF 47 (759)
Q Consensus 20 ~~i~lP-qIVVVG~QSsGKSSLLEAL~G~ 47 (759)
..++-+ -|+++|..|+|||||+.+|.|.
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 345555 5789999999999999999983
No 416
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=69.99 E-value=2.1 Score=41.26 Aligned_cols=20 Identities=30% Similarity=0.534 Sum_probs=18.5
Q ss_pred EEEEEeccCCchHHHHHHHh
Q 004351 26 AVLVVGHQTDGKSALVEALM 45 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~ 45 (759)
-|+++|..+|||||+.+.|.
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999886
No 417
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=69.95 E-value=2 Score=43.73 Aligned_cols=25 Identities=32% Similarity=0.441 Sum_probs=22.1
Q ss_pred EEEEEeccCCchHHHHHHHh---CCccc
Q 004351 26 AVLVVGHQTDGKSALVEALM---GFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~---G~~fp 50 (759)
.|+++|..+|||||+.+.|. |+.+.
T Consensus 11 ~i~i~G~~GsGKsTla~~la~~lg~~~~ 38 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVSRGLARALGARYL 38 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 68999999999999999998 76654
No 418
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=69.94 E-value=2.4 Score=41.87 Aligned_cols=21 Identities=14% Similarity=0.352 Sum_probs=19.5
Q ss_pred CEEEEEeccCCchHHHHHHHh
Q 004351 25 PAVLVVGHQTDGKSALVEALM 45 (759)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~ 45 (759)
..|+++|..+|||||+.+.|.
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 469999999999999999987
No 419
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=69.29 E-value=2.5 Score=41.40 Aligned_cols=21 Identities=19% Similarity=0.465 Sum_probs=18.8
Q ss_pred EEEEEeccCCchHHHHHHHhC
Q 004351 26 AVLVVGHQTDGKSALVEALMG 46 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G 46 (759)
.|+++|..+|||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999853
No 420
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=69.05 E-value=2.3 Score=41.09 Aligned_cols=21 Identities=29% Similarity=0.379 Sum_probs=18.9
Q ss_pred EEEEEeccCCchHHHHHHHhC
Q 004351 26 AVLVVGHQTDGKSALVEALMG 46 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G 46 (759)
-|+++|..+|||||+.+.|..
T Consensus 22 ~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998863
No 421
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=68.74 E-value=4.3 Score=42.82 Aligned_cols=26 Identities=19% Similarity=0.359 Sum_probs=22.8
Q ss_pred CCCEEEEEeccCCchHHHHHHHhCCc
Q 004351 23 DAPAVLVVGHQTDGKSALVEALMGFQ 48 (759)
Q Consensus 23 ~lPqIVVVG~QSsGKSSLLEAL~G~~ 48 (759)
..|-++++|..|+|||+|+.++.+.-
T Consensus 43 ~~~~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 43 HYPRATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999998754
No 422
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=68.41 E-value=2.3 Score=53.78 Aligned_cols=27 Identities=26% Similarity=0.331 Sum_probs=23.7
Q ss_pred EEEEEeccCCchHHHHHHHhCCcccee
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFNHV 52 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp~~ 52 (759)
.+++||..|||||||++.|.|+-=|..
T Consensus 446 ~vaivG~sGsGKSTll~ll~~~~~~~~ 472 (1321)
T 4f4c_A 446 TVALVGSSGCGKSTIISLLLRYYDVLK 472 (1321)
T ss_dssp EEEEEECSSSCHHHHHHHHTTSSCCSE
T ss_pred EEEEEecCCCcHHHHHHHhcccccccc
Confidence 478999999999999999999876633
No 423
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=68.28 E-value=2.1 Score=42.24 Aligned_cols=27 Identities=15% Similarity=0.201 Sum_probs=22.3
Q ss_pred CCCCC-EEEEEeccCCchHHHHHHHhCC
Q 004351 21 PFDAP-AVLVVGHQTDGKSALVEALMGF 47 (759)
Q Consensus 21 ~i~lP-qIVVVG~QSsGKSSLLEAL~G~ 47 (759)
.++-. -++++|+.++|||+|+..|++.
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 44444 3689999999999999999994
No 424
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=68.16 E-value=2.1 Score=41.48 Aligned_cols=26 Identities=23% Similarity=0.156 Sum_probs=21.8
Q ss_pred CCCCC-EEEEEeccCCchHHHHHHHhC
Q 004351 21 PFDAP-AVLVVGHQTDGKSALVEALMG 46 (759)
Q Consensus 21 ~i~lP-qIVVVG~QSsGKSSLLEAL~G 46 (759)
.++-. -++++|..++|||+|+..|++
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34444 468999999999999999999
No 425
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=68.09 E-value=4.7 Score=37.34 Aligned_cols=24 Identities=29% Similarity=0.353 Sum_probs=20.8
Q ss_pred CCEEEEEeccCCchHHHHHHHhCC
Q 004351 24 APAVLVVGHQTDGKSALVEALMGF 47 (759)
Q Consensus 24 lPqIVVVG~QSsGKSSLLEAL~G~ 47 (759)
-+-++++|..|+|||+++.++...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999998764
No 426
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=67.74 E-value=2.4 Score=43.18 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=19.7
Q ss_pred CEEEEEeccCCchHHHHHHHhC
Q 004351 25 PAVLVVGHQTDGKSALVEALMG 46 (759)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G 46 (759)
+-|+++|-.||||||+...|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4699999999999999999864
No 427
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=67.73 E-value=2.7 Score=41.19 Aligned_cols=27 Identities=26% Similarity=0.277 Sum_probs=21.2
Q ss_pred CCCCCCEEEEEeccCCchHHHHHHHhC
Q 004351 20 TPFDAPAVLVVGHQTDGKSALVEALMG 46 (759)
Q Consensus 20 ~~i~lPqIVVVG~QSsGKSSLLEAL~G 46 (759)
+.-.-.-|.++|..+|||||+-+.|..
T Consensus 8 ~~~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 8 HHHHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp --CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHH
Confidence 344456799999999999999998863
No 428
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=67.65 E-value=2.1 Score=43.54 Aligned_cols=21 Identities=19% Similarity=0.325 Sum_probs=19.1
Q ss_pred EEEEEeccCCchHHHHHHHhC
Q 004351 26 AVLVVGHQTDGKSALVEALMG 46 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G 46 (759)
-|+|+|..+||||||-.+|.+
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999999975
No 429
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=67.20 E-value=2.3 Score=48.31 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=21.5
Q ss_pred CCEEEEEeccCCchHHHHHHHhC
Q 004351 24 APAVLVVGHQTDGKSALVEALMG 46 (759)
Q Consensus 24 lPqIVVVG~QSsGKSSLLEAL~G 46 (759)
.|.+.|+|..+||||++|++|+.
T Consensus 167 ~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp SCSEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 59999999999999999999875
No 430
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=66.60 E-value=2.3 Score=53.82 Aligned_cols=25 Identities=32% Similarity=0.357 Sum_probs=22.9
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.|.+||..|||||||+..|.|+-=|
T Consensus 1107 ~vaIVG~SGsGKSTL~~lL~rl~~p 1131 (1321)
T 4f4c_A 1107 TLALVGPSGCGKSTVVALLERFYDT 1131 (1321)
T ss_dssp EEEEECSTTSSTTSHHHHHTTSSCC
T ss_pred EEEEECCCCChHHHHHHHHhcCccC
Confidence 4789999999999999999998766
No 431
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=66.56 E-value=1.1 Score=50.73 Aligned_cols=23 Identities=30% Similarity=0.309 Sum_probs=20.0
Q ss_pred CEEEEEeccCCchHHHHHHHhCC
Q 004351 25 PAVLVVGHQTDGKSALVEALMGF 47 (759)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~ 47 (759)
.-.|++|..|||||+||+||.+.
T Consensus 61 g~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 61 GFCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp SEEEEEESHHHHHHHHTHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHH
Confidence 36899999999999999999554
No 432
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=66.37 E-value=2.5 Score=47.00 Aligned_cols=25 Identities=16% Similarity=0.174 Sum_probs=22.2
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.+.++|+.++|||+||..|+|..-|
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~~~ 183 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYTRA 183 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcccCC
Confidence 4789999999999999999998644
No 433
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=66.32 E-value=2.8 Score=41.58 Aligned_cols=20 Identities=20% Similarity=0.361 Sum_probs=18.4
Q ss_pred EEEEEeccCCchHHHHHHHh
Q 004351 26 AVLVVGHQTDGKSALVEALM 45 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~ 45 (759)
.|+++|..+|||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La 21 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVK 21 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48999999999999999985
No 434
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=66.08 E-value=5.6 Score=43.14 Aligned_cols=25 Identities=32% Similarity=0.461 Sum_probs=22.1
Q ss_pred CCCEEEEEeccCCchHHHHHHHhCC
Q 004351 23 DAPAVLVVGHQTDGKSALVEALMGF 47 (759)
Q Consensus 23 ~lPqIVVVG~QSsGKSSLLEAL~G~ 47 (759)
..|.|+++|..|+||||+..+|.+.
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHHH
Confidence 4678999999999999999988763
No 435
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=66.06 E-value=22 Score=43.22 Aligned_cols=26 Identities=19% Similarity=0.328 Sum_probs=22.1
Q ss_pred EEEEEeccCCchHHHHHHH--------hCCccce
Q 004351 26 AVLVVGHQTDGKSALVEAL--------MGFQFNH 51 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL--------~G~~fp~ 51 (759)
-++++|..++|||++|..| +|..+|.
T Consensus 664 i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa 697 (934)
T 3thx_A 664 FHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPC 697 (934)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccc
Confidence 3789999999999999999 6766663
No 436
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=66.00 E-value=4.2 Score=39.02 Aligned_cols=21 Identities=29% Similarity=0.396 Sum_probs=19.3
Q ss_pred EEEEEeccCCchHHHHHHHhC
Q 004351 26 AVLVVGHQTDGKSALVEALMG 46 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G 46 (759)
-+++.|..|+|||+++.++..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999975
No 437
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=65.21 E-value=3 Score=41.88 Aligned_cols=22 Identities=14% Similarity=0.289 Sum_probs=19.8
Q ss_pred EEEEEeccCCchHHHHHHHhCC
Q 004351 26 AVLVVGHQTDGKSALVEALMGF 47 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~ 47 (759)
-||+.|..+|||||+++.|...
T Consensus 28 ~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 28 FITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4899999999999999999863
No 438
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=65.19 E-value=2.8 Score=45.14 Aligned_cols=25 Identities=16% Similarity=0.099 Sum_probs=22.3
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.+.++|+.++|||+||..|+|..-|
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~~~ 97 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGASA 97 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4789999999999999999998644
No 439
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=65.11 E-value=3.4 Score=40.56 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=19.4
Q ss_pred CEEEEEeccCCchHHHHHHHhC
Q 004351 25 PAVLVVGHQTDGKSALVEALMG 46 (759)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G 46 (759)
..|+++|..+|||||+...|..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998853
No 440
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=65.06 E-value=2 Score=49.27 Aligned_cols=25 Identities=32% Similarity=0.409 Sum_probs=21.8
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.|+++|..|||||||+.+|.|.--|
T Consensus 371 iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 371 TVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp EEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCChHHHHHHHHHHhhcc
Confidence 4789999999999999999997544
No 441
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=64.65 E-value=2.8 Score=52.90 Aligned_cols=25 Identities=28% Similarity=0.303 Sum_probs=22.7
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.+++||..|||||||+..|.|+-=|
T Consensus 418 ~~~ivG~sGsGKSTl~~ll~g~~~~ 442 (1284)
T 3g5u_A 418 TVALVGNSGCGKSTTVQLMQRLYDP 442 (1284)
T ss_dssp EEEEECCSSSSHHHHHHHTTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4789999999999999999998755
No 442
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=64.17 E-value=4.5 Score=45.49 Aligned_cols=24 Identities=38% Similarity=0.671 Sum_probs=20.9
Q ss_pred CCC-EEEEEeccCCchHHHHHHHhC
Q 004351 23 DAP-AVLVVGHQTDGKSALVEALMG 46 (759)
Q Consensus 23 ~lP-qIVVVG~QSsGKSSLLEAL~G 46 (759)
.+| -|+++|..|+|||+|+.+|.|
T Consensus 47 ~~p~gvLL~GppGtGKT~Laraia~ 71 (476)
T 2ce7_A 47 RMPKGILLVGPPGTGKTLLARAVAG 71 (476)
T ss_dssp CCCSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHH
Confidence 344 389999999999999999987
No 443
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=63.26 E-value=5 Score=42.03 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=21.6
Q ss_pred CCEEEEEeccCCchHHHHHHHhCCc
Q 004351 24 APAVLVVGHQTDGKSALVEALMGFQ 48 (759)
Q Consensus 24 lPqIVVVG~QSsGKSSLLEAL~G~~ 48 (759)
-.-+++.|..|+|||+|+.++.+.-
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3468999999999999999998753
No 444
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=63.18 E-value=3 Score=42.68 Aligned_cols=21 Identities=29% Similarity=0.223 Sum_probs=19.4
Q ss_pred EEEEEeccCCchHHHHHHHhC
Q 004351 26 AVLVVGHQTDGKSALVEALMG 46 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G 46 (759)
-++++|..|+|||+|+..|+|
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 378999999999999999997
No 445
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=63.09 E-value=3.6 Score=40.41 Aligned_cols=25 Identities=20% Similarity=0.445 Sum_probs=20.9
Q ss_pred CEEEEEeccCCchHHHHHHHh---CCcc
Q 004351 25 PAVLVVGHQTDGKSALVEALM---GFQF 49 (759)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~---G~~f 49 (759)
..|+++|..+|||||+.+.|. |+++
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~ 33 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAH 33 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceE
Confidence 469999999999999999984 5543
No 446
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=62.19 E-value=3.6 Score=41.44 Aligned_cols=20 Identities=20% Similarity=0.263 Sum_probs=18.9
Q ss_pred EEEEEeccCCchHHHHHHHh
Q 004351 26 AVLVVGHQTDGKSALVEALM 45 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~ 45 (759)
.|+++|..+|||||+...|.
T Consensus 31 ~I~l~G~~GsGKsT~a~~L~ 50 (243)
T 3tlx_A 31 RYIFLGAPGSGKGTQSLNLK 50 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 79999999999999999996
No 447
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=61.65 E-value=3.9 Score=42.33 Aligned_cols=21 Identities=24% Similarity=0.357 Sum_probs=19.1
Q ss_pred EEEEEeccCCchHHHHHHHhC
Q 004351 26 AVLVVGHQTDGKSALVEALMG 46 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G 46 (759)
-|+|+|..+|||||+.+.|..
T Consensus 77 iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999973
No 448
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=61.49 E-value=3.8 Score=41.33 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=20.5
Q ss_pred EEEEEeccCCchHHHHHHHhC-Cccc
Q 004351 26 AVLVVGHQTDGKSALVEALMG-FQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G-~~fp 50 (759)
-|++.|..+|||||+-+.|.. ..++
T Consensus 24 iI~I~G~~GSGKST~a~~L~~~lg~~ 49 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQLLGQN 49 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhh
Confidence 589999999999999998855 3443
No 449
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=61.33 E-value=4.7 Score=41.68 Aligned_cols=22 Identities=36% Similarity=0.662 Sum_probs=20.3
Q ss_pred CEEEEEeccCCchHHHHHHHhC
Q 004351 25 PAVLVVGHQTDGKSALVEALMG 46 (759)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G 46 (759)
+-++|.|..++|||||+..+..
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~ 53 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLN 53 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHH
Confidence 7899999999999999999864
No 450
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=61.30 E-value=3.8 Score=42.15 Aligned_cols=21 Identities=24% Similarity=0.498 Sum_probs=19.2
Q ss_pred EEEEEeccCCchHHHHHHHhC
Q 004351 26 AVLVVGHQTDGKSALVEALMG 46 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G 46 (759)
-|+++|..+|||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999975
No 451
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=61.25 E-value=3.2 Score=44.79 Aligned_cols=28 Identities=14% Similarity=0.158 Sum_probs=24.7
Q ss_pred CCCEEEEEeccCCchHHHHHHHhCCccc
Q 004351 23 DAPAVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 23 ~lPqIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
.-|.++|+|..++|||+++..|++.-.+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~ 61 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYM 61 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHH
Confidence 5689999999999999999999986654
No 452
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=61.12 E-value=4.4 Score=40.30 Aligned_cols=21 Identities=19% Similarity=0.298 Sum_probs=19.1
Q ss_pred CEEEEEeccCCchHHHHHHHh
Q 004351 25 PAVLVVGHQTDGKSALVEALM 45 (759)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~ 45 (759)
..|+++|..+|||||+.+.|.
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La 37 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLA 37 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 369999999999999999986
No 453
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=61.09 E-value=5.9 Score=41.26 Aligned_cols=40 Identities=18% Similarity=0.180 Sum_probs=28.8
Q ss_pred HHHHHHHhhhhcCCCCCCCEEEEEeccCCchHHHHHHHhCCc
Q 004351 7 AYNELHGLAQELETPFDAPAVLVVGHQTDGKSALVEALMGFQ 48 (759)
Q Consensus 7 ~~n~L~~l~~~~~~~i~lPqIVVVG~QSsGKSSLLEAL~G~~ 48 (759)
++..++.+... ..-..+-+++.|+.|+|||+|+.+|.+.-
T Consensus 22 a~~~~~~~~~~--~~~~~~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 22 AYEVVKEALEN--LGSLYNPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp HHHHHHHHHHT--TTTSCSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC--cCCCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 45566666532 11134569999999999999999998744
No 454
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=60.69 E-value=8.9 Score=35.08 Aligned_cols=22 Identities=23% Similarity=0.274 Sum_probs=19.7
Q ss_pred EEEEeccCCchHHHHHHHhCCc
Q 004351 27 VLVVGHQTDGKSALVEALMGFQ 48 (759)
Q Consensus 27 IVVVG~QSsGKSSLLEAL~G~~ 48 (759)
|.+.|+.|+|||++..+|....
T Consensus 27 vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 27 VWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp EEEESSTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 7899999999999999997643
No 455
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=60.65 E-value=3.8 Score=51.67 Aligned_cols=26 Identities=31% Similarity=0.342 Sum_probs=23.2
Q ss_pred EEEEEeccCCchHHHHHHHhCCccce
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFNH 51 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp~ 51 (759)
.+.+||..|||||||++.|.|+-=|.
T Consensus 1061 ~v~ivG~sGsGKSTl~~~l~g~~~p~ 1086 (1284)
T 3g5u_A 1061 TLALVGSSGCGKSTVVQLLERFYDPM 1086 (1284)
T ss_dssp EEEEECSSSTTHHHHHHHHTTSSCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCcCCC
Confidence 47899999999999999999987663
No 456
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=60.54 E-value=4.2 Score=40.55 Aligned_cols=21 Identities=29% Similarity=0.385 Sum_probs=18.9
Q ss_pred EEEEEeccCCchHHHHHHHhC
Q 004351 26 AVLVVGHQTDGKSALVEALMG 46 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G 46 (759)
-|++.|..+|||||+.+.|..
T Consensus 4 ~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999999874
No 457
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=60.47 E-value=3.2 Score=50.73 Aligned_cols=23 Identities=30% Similarity=0.290 Sum_probs=20.3
Q ss_pred EEEEEeccCCchHHHHHHHhCCc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQ 48 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~ 48 (759)
.++++|..||||||||..|+|-.
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG~ 485 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANGQ 485 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999999643
No 458
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=60.35 E-value=3.2 Score=42.11 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=19.7
Q ss_pred CEEEEEeccCCchHHHHHHHhC
Q 004351 25 PAVLVVGHQTDGKSALVEALMG 46 (759)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G 46 (759)
.-|++.|..||||||+.+.|..
T Consensus 25 ~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 25 KKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp EEEEEECSTTSSHHHHHTTTGG
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999874
No 459
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=60.12 E-value=3.9 Score=47.09 Aligned_cols=23 Identities=39% Similarity=0.533 Sum_probs=21.3
Q ss_pred CCEEEEEeccCCchHHHHHHHhC
Q 004351 24 APAVLVVGHQTDGKSALVEALMG 46 (759)
Q Consensus 24 lPqIVVVG~QSsGKSSLLEAL~G 46 (759)
.|.+.|+|..+||||.+|++|+.
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~ 236 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLL 236 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCeeEEECCCCCCHHHHHHHHHH
Confidence 59999999999999999999765
No 460
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=59.63 E-value=3.1 Score=48.56 Aligned_cols=19 Identities=42% Similarity=0.620 Sum_probs=17.5
Q ss_pred EEEEeccCCchHHHHHHHh
Q 004351 27 VLVVGHQTDGKSALVEALM 45 (759)
Q Consensus 27 IVVVG~QSsGKSSLLEAL~ 45 (759)
++++|..+|||||||+.|+
T Consensus 351 vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 351 VAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp EEEECSTTSSHHHHHTTTH
T ss_pred EEEEeeCCCCHHHHHHHHH
Confidence 7899999999999998875
No 461
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=59.04 E-value=5.1 Score=45.28 Aligned_cols=26 Identities=38% Similarity=0.511 Sum_probs=22.1
Q ss_pred CCCC-EEEEEeccCCchHHHHHHHhCC
Q 004351 22 FDAP-AVLVVGHQTDGKSALVEALMGF 47 (759)
Q Consensus 22 i~lP-qIVVVG~QSsGKSSLLEAL~G~ 47 (759)
+.+| -+.++|..|+|||+|+.+|.|.
T Consensus 61 ~~ip~GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 61 ARIPKGVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp CCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3444 3999999999999999999975
No 462
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=58.83 E-value=5.5 Score=46.44 Aligned_cols=47 Identities=11% Similarity=-0.037 Sum_probs=26.7
Q ss_pred HHHHHHhcCccc-eeEeecccC--CcCcHHH-HHHHHHhCcCCCeEEEEecC
Q 004351 163 SLVRAKMQHREF-IILCLEDCS--DWSNATT-RRVVMQIDPELKRTIIVSTK 210 (759)
Q Consensus 163 ~lv~~Yi~~~~~-IIL~V~~~~--D~~~~~~-l~lar~~Dp~g~RTIgVlTK 210 (759)
.+.+..+.+|+. |+|+=++.+ |..+... +++.+++...| .||.++|.
T Consensus 212 ~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g-~tvi~vtH 262 (670)
T 3ux8_A 212 RLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLG-NTLIVVEH 262 (670)
T ss_dssp HHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTT-CEEEEECC
T ss_pred HHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcC-CEEEEEeC
Confidence 556666666653 444445542 5555543 55666664333 57777776
No 463
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=58.71 E-value=8.2 Score=40.47 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=21.6
Q ss_pred CCCEEEEEeccCCchHHHHHHHhCC
Q 004351 23 DAPAVLVVGHQTDGKSALVEALMGF 47 (759)
Q Consensus 23 ~lPqIVVVG~QSsGKSSLLEAL~G~ 47 (759)
.-+-+++.|..|+|||+++.++...
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999864
No 464
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=58.30 E-value=4.3 Score=40.87 Aligned_cols=20 Identities=45% Similarity=0.705 Sum_probs=18.8
Q ss_pred EEEEeccCCchHHHHHHHhC
Q 004351 27 VLVVGHQTDGKSALVEALMG 46 (759)
Q Consensus 27 IVVVG~QSsGKSSLLEAL~G 46 (759)
+++.|..|+|||+|..+|.+
T Consensus 47 vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 88999999999999999986
No 465
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=58.12 E-value=5.5 Score=41.52 Aligned_cols=26 Identities=27% Similarity=0.350 Sum_probs=22.5
Q ss_pred CCCEEEEEeccCCchHHHHHHHhCCc
Q 004351 23 DAPAVLVVGHQTDGKSALVEALMGFQ 48 (759)
Q Consensus 23 ~lPqIVVVG~QSsGKSSLLEAL~G~~ 48 (759)
..|.+++.|..|+|||+++.+|.+.-
T Consensus 57 ~~~~~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 57 NLPHMLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp TCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 34669999999999999999998763
No 466
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=57.32 E-value=11 Score=34.54 Aligned_cols=22 Identities=9% Similarity=0.096 Sum_probs=19.6
Q ss_pred EEEEEeccCCchHHHHHHHhCC
Q 004351 26 AVLVVGHQTDGKSALVEALMGF 47 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~ 47 (759)
-|.+.|+.|+|||++..+|...
T Consensus 29 ~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 29 PVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp CEEEEEETTCCHHHHHGGGCCT
T ss_pred cEEEECCCCccHHHHHHHHHHh
Confidence 3889999999999999999764
No 467
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=56.79 E-value=12 Score=37.07 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=19.7
Q ss_pred CEEEEEeccCCchHHHHHHHhC
Q 004351 25 PAVLVVGHQTDGKSALVEALMG 46 (759)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G 46 (759)
+-|++.|..|+|||++..+|..
T Consensus 40 ~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999975
No 468
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=55.74 E-value=4 Score=42.59 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=16.6
Q ss_pred CEEEEEeccCCchHHHHHHHhC
Q 004351 25 PAVLVVGHQTDGKSALVEALMG 46 (759)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G 46 (759)
+-|.|.|..+||||||.+.|..
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998865
No 469
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=54.63 E-value=12 Score=39.42 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=21.0
Q ss_pred CCEEEEEeccCCchHHHHHHHhCC
Q 004351 24 APAVLVVGHQTDGKSALVEALMGF 47 (759)
Q Consensus 24 lPqIVVVG~QSsGKSSLLEAL~G~ 47 (759)
.+-+++.|..|+|||+++.++...
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999999853
No 470
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=54.52 E-value=13 Score=38.96 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=21.0
Q ss_pred CCEEEEEeccCCchHHHHHHHhCC
Q 004351 24 APAVLVVGHQTDGKSALVEALMGF 47 (759)
Q Consensus 24 lPqIVVVG~QSsGKSSLLEAL~G~ 47 (759)
-.-+++.|+.|+|||++..+|...
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 348999999999999999999753
No 471
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=54.09 E-value=5.6 Score=43.62 Aligned_cols=21 Identities=29% Similarity=0.488 Sum_probs=18.7
Q ss_pred EEEEEeccCCchHHHHHHHhC
Q 004351 26 AVLVVGHQTDGKSALVEALMG 46 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G 46 (759)
-||++|..+|||||+...|..
T Consensus 260 lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 260 VVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp EEEEESCTTSSHHHHHHHHTG
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478899999999999999864
No 472
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=53.68 E-value=9.8 Score=38.87 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=21.5
Q ss_pred CCCEEEEEeccCCchHHHHHHHhCC
Q 004351 23 DAPAVLVVGHQTDGKSALVEALMGF 47 (759)
Q Consensus 23 ~lPqIVVVG~QSsGKSSLLEAL~G~ 47 (759)
..|.+++.|+.|+|||+++.++...
T Consensus 41 ~~~~~ll~G~~G~GKt~la~~l~~~ 65 (323)
T 1sxj_B 41 NMPHMIISGMPGIGKTTSVHCLAHE 65 (323)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 3466999999999999999998754
No 473
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=53.42 E-value=6.8 Score=38.25 Aligned_cols=21 Identities=48% Similarity=0.635 Sum_probs=18.8
Q ss_pred EEEEeccCCchHHHHHHHhCC
Q 004351 27 VLVVGHQTDGKSALVEALMGF 47 (759)
Q Consensus 27 IVVVG~QSsGKSSLLEAL~G~ 47 (759)
|.|+|..+||||++-+.|.-.
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999998743
No 474
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=52.85 E-value=11 Score=38.23 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=21.3
Q ss_pred CCCEEEEEeccCCchHHHHHHHhCC
Q 004351 23 DAPAVLVVGHQTDGKSALVEALMGF 47 (759)
Q Consensus 23 ~lPqIVVVG~QSsGKSSLLEAL~G~ 47 (759)
..+.+++.|..|+|||+|..+|...
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3457899999999999999999763
No 475
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=52.80 E-value=6.6 Score=39.05 Aligned_cols=21 Identities=29% Similarity=0.257 Sum_probs=18.7
Q ss_pred EEEEEeccCCchHHHHHHHhC
Q 004351 26 AVLVVGHQTDGKSALVEALMG 46 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G 46 (759)
-||+.|..+|||||+++.|..
T Consensus 8 ~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 8 FVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999999863
No 476
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=52.57 E-value=15 Score=38.45 Aligned_cols=41 Identities=17% Similarity=0.289 Sum_probs=27.7
Q ss_pred HHHHHHHhhhhcCCCCCCCEEEEEeccCCchHHHHHHHhCCc
Q 004351 7 AYNELHGLAQELETPFDAPAVLVVGHQTDGKSALVEALMGFQ 48 (759)
Q Consensus 7 ~~n~L~~l~~~~~~~i~lPqIVVVG~QSsGKSSLLEAL~G~~ 48 (759)
++..+.......... .-+-|++.|+.|+|||.|+.+|...-
T Consensus 136 ~~~~~~~~i~~~~~~-~~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 136 AFSAILDFVEQYPSA-EQKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp HHHHHHHHHHHCSCS-SCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccc-CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 444444454332211 24679999999999999999997643
No 477
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=52.49 E-value=11 Score=38.55 Aligned_cols=25 Identities=16% Similarity=0.324 Sum_probs=21.0
Q ss_pred CCCEEEEEeccCCchHHHHHHHhCC
Q 004351 23 DAPAVLVVGHQTDGKSALVEALMGF 47 (759)
Q Consensus 23 ~lPqIVVVG~QSsGKSSLLEAL~G~ 47 (759)
..+.|++.|+.|+|||++..+|...
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3446999999999999999887654
No 478
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=52.30 E-value=8.6 Score=32.04 Aligned_cols=46 Identities=11% Similarity=0.242 Sum_probs=35.0
Q ss_pred HHhhcccchhhhhchhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 004351 695 LESAFEGDLDNVFDITNLRHSLSQQKSDTEIEMKRIKKLKEKFKLI 740 (759)
Q Consensus 695 l~~~~~~~~~~~f~~~~~~~~l~~~~~~l~~~~~~~~~~~~kf~~~ 740 (759)
|..+-..+.+++..-....+.|+.+.++.+.+++.++.-.+||+++
T Consensus 24 Lq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrSV 69 (72)
T 3nmd_A 24 LQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYRSV 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3444444445566666778999999999999999999999999654
No 479
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=52.26 E-value=6.5 Score=42.28 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=19.5
Q ss_pred CEEEEEeccCCchHHHHHHHhC
Q 004351 25 PAVLVVGHQTDGKSALVEALMG 46 (759)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G 46 (759)
+-|+|+|..+||||+|-..|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 3689999999999999998875
No 480
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=52.24 E-value=9.7 Score=38.99 Aligned_cols=37 Identities=22% Similarity=0.232 Sum_probs=27.2
Q ss_pred HHHHHHHhhhhcCCCCCCCEEEEEeccCCchHHHHHHHhCC
Q 004351 7 AYNELHGLAQELETPFDAPAVLVVGHQTDGKSALVEALMGF 47 (759)
Q Consensus 7 ~~n~L~~l~~~~~~~i~lPqIVVVG~QSsGKSSLLEAL~G~ 47 (759)
.++.|+..... . ..|.+++.|..|+|||++..+|...
T Consensus 33 ~~~~l~~~l~~--~--~~~~~ll~G~~G~GKT~la~~l~~~ 69 (327)
T 1iqp_A 33 IVKRLKHYVKT--G--SMPHLLFAGPPGVGKTTAALALARE 69 (327)
T ss_dssp HHHHHHHHHHH--T--CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHc--C--CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 44555554421 1 4567999999999999999999864
No 481
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=52.13 E-value=6.6 Score=41.94 Aligned_cols=22 Identities=27% Similarity=0.279 Sum_probs=19.7
Q ss_pred CEEEEEeccCCchHHHHHHHhC
Q 004351 25 PAVLVVGHQTDGKSALVEALMG 46 (759)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G 46 (759)
|-|||+|..++|||+|...|..
T Consensus 4 ~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCcCCHHHHHHHHHH
Confidence 5689999999999999999974
No 482
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=52.04 E-value=13 Score=37.27 Aligned_cols=36 Identities=17% Similarity=0.313 Sum_probs=27.3
Q ss_pred HHHHHHHHHhhhhcCCCCCCC---EEEEEeccCCchHHHHHHHhC
Q 004351 5 YEAYNELHGLAQELETPFDAP---AVLVVGHQTDGKSALVEALMG 46 (759)
Q Consensus 5 ~~~~n~L~~l~~~~~~~i~lP---qIVVVG~QSsGKSSLLEAL~G 46 (759)
+..+..|..+.. .+| .|++.|..|+|||++..||..
T Consensus 42 ~~f~~~l~~~~~------~iPkkn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 42 ITFLGALKSFLK------GTPKKNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp HHHHHHHHHHHH------TCTTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHHh------cCCcccEEEEECCCCCCHHHHHHHHHH
Confidence 445666666653 267 799999999999988777765
No 483
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=51.90 E-value=6.4 Score=43.75 Aligned_cols=22 Identities=23% Similarity=0.496 Sum_probs=19.8
Q ss_pred EEEEEeccCCchHHHHHHHhCC
Q 004351 26 AVLVVGHQTDGKSALVEALMGF 47 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~ 47 (759)
.|++||..+|||||+...|...
T Consensus 41 ~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 41 LIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999754
No 484
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=51.56 E-value=7.4 Score=38.17 Aligned_cols=26 Identities=19% Similarity=0.307 Sum_probs=19.6
Q ss_pred CCCCC-EEEEEeccCCchHHHHHHHhC
Q 004351 21 PFDAP-AVLVVGHQTDGKSALVEALMG 46 (759)
Q Consensus 21 ~i~lP-qIVVVG~QSsGKSSLLEAL~G 46 (759)
.++-. -++++|+.++|||+|+..|+.
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 44444 368899999999999776653
No 485
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=51.45 E-value=9.6 Score=42.06 Aligned_cols=39 Identities=18% Similarity=0.307 Sum_probs=28.7
Q ss_pred HHHHHHHhhhhcCCCCCCCEEEEEeccCCchHHHHHHHhCCc
Q 004351 7 AYNELHGLAQELETPFDAPAVLVVGHQTDGKSALVEALMGFQ 48 (759)
Q Consensus 7 ~~n~L~~l~~~~~~~i~lPqIVVVG~QSsGKSSLLEAL~G~~ 48 (759)
++..++.++.. .. ..+-+++.|+.|+|||+|+.+|.+.-
T Consensus 116 a~~~~~~~a~~--~~-~~~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 116 AYHAALEVAKH--PG-RYNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp HHHHHHHHHHS--TT-SSCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC--CC-CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 45566666532 11 15679999999999999999998743
No 486
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=51.41 E-value=7.2 Score=37.90 Aligned_cols=21 Identities=19% Similarity=0.378 Sum_probs=18.8
Q ss_pred EEEEEeccCCchHHHHHHHhC
Q 004351 26 AVLVVGHQTDGKSALVEALMG 46 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G 46 (759)
-|+++|..+||||++...|..
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999988854
No 487
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=50.92 E-value=7.7 Score=38.82 Aligned_cols=21 Identities=24% Similarity=0.408 Sum_probs=19.2
Q ss_pred EEEEEeccCCchHHHHHHHhC
Q 004351 26 AVLVVGHQTDGKSALVEALMG 46 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G 46 (759)
-||+.|..+|||||+++.|..
T Consensus 7 ~i~~eG~~g~GKst~~~~l~~ 27 (216)
T 3tmk_A 7 LILIEGLDRTGKTTQCNILYK 27 (216)
T ss_dssp EEEEEECSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999875
No 488
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=50.84 E-value=5.7 Score=47.28 Aligned_cols=25 Identities=24% Similarity=0.329 Sum_probs=22.6
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
-++++|..++||||+|..|.|+-++
T Consensus 578 i~~I~GpNGsGKSTlLr~iagl~~~ 602 (765)
T 1ewq_A 578 LVLITGPNMAGKSTFLRQTALIALL 602 (765)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCChHHHHHHHHhhhhh
Confidence 4789999999999999999998764
No 489
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=50.83 E-value=13 Score=38.57 Aligned_cols=24 Identities=21% Similarity=0.196 Sum_probs=21.1
Q ss_pred CCCEEEEEeccCCchHHHHHHHhC
Q 004351 23 DAPAVLVVGHQTDGKSALVEALMG 46 (759)
Q Consensus 23 ~lPqIVVVG~QSsGKSSLLEAL~G 46 (759)
..+.|++.|..|+|||+|..+|..
T Consensus 54 ~~~~vll~G~~GtGKT~la~~ia~ 77 (338)
T 3pfi_A 54 CLDHILFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHH
Confidence 456799999999999999999954
No 490
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=50.82 E-value=7.6 Score=39.38 Aligned_cols=21 Identities=19% Similarity=0.441 Sum_probs=19.2
Q ss_pred EEEEEeccCCchHHHHHHHhC
Q 004351 26 AVLVVGHQTDGKSALVEALMG 46 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G 46 (759)
-||+.|..+|||||+++.|..
T Consensus 29 ~i~~eG~~GsGKsT~~~~l~~ 49 (236)
T 3lv8_A 29 FIVIEGLEGAGKSTAIQVVVE 49 (236)
T ss_dssp EEEEEESTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999875
No 491
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=50.79 E-value=7.8 Score=38.60 Aligned_cols=21 Identities=14% Similarity=0.338 Sum_probs=18.9
Q ss_pred EEEEEeccCCchHHHHHHHhC
Q 004351 26 AVLVVGHQTDGKSALVEALMG 46 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G 46 (759)
-||+.|..+|||||+++.|..
T Consensus 5 ~i~~eG~~gsGKsT~~~~l~~ 25 (213)
T 4tmk_A 5 YIVIEGLEGAGKTTARNVVVE 25 (213)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999874
No 492
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=50.55 E-value=7.4 Score=38.88 Aligned_cols=22 Identities=32% Similarity=0.359 Sum_probs=19.7
Q ss_pred EEEEEeccCCchHHHHHHHhCC
Q 004351 26 AVLVVGHQTDGKSALVEALMGF 47 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~ 47 (759)
-|+++|..++|||+|.-.|...
T Consensus 36 ~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 36 GVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4899999999999999999754
No 493
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=50.46 E-value=5.9 Score=47.39 Aligned_cols=25 Identities=16% Similarity=0.286 Sum_probs=22.7
Q ss_pred EEEEEeccCCchHHHHHHHhCCccc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (759)
-++++|..++|||++|..|.|+.++
T Consensus 609 i~~ItGpNGsGKSTlLr~iagl~~~ 633 (800)
T 1wb9_A 609 MLIITGPNMGGKSTYMRQTALIALM 633 (800)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCChHHHHHHHHHHHHH
Confidence 4889999999999999999998765
No 494
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=50.05 E-value=10 Score=38.87 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=21.6
Q ss_pred EEEEEeccCCchHHHHHHHhCCcc
Q 004351 26 AVLVVGHQTDGKSALVEALMGFQF 49 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~f 49 (759)
-++++|+.|+|||++..+|.+.-.
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~~~ 72 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAATLF 72 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHHHHc
Confidence 589999999999999999998654
No 495
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=50.01 E-value=8.9 Score=39.72 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=20.6
Q ss_pred CCCCCEE-EEEeccCCchHHHHHHHhC
Q 004351 21 PFDAPAV-LVVGHQTDGKSALVEALMG 46 (759)
Q Consensus 21 ~i~lPqI-VVVG~QSsGKSSLLEAL~G 46 (759)
.+..|.. .+.|..|+|||+|.++|..
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4566654 4559999999999999974
No 496
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=49.99 E-value=6.5 Score=39.65 Aligned_cols=21 Identities=14% Similarity=0.203 Sum_probs=16.1
Q ss_pred EEEEEeccCCchHHHHHHHhC
Q 004351 26 AVLVVGHQTDGKSALVEALMG 46 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G 46 (759)
-||+.|..+|||||+++.|..
T Consensus 27 ~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 27 FITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp EEEEECCC---CHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999874
No 497
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=49.75 E-value=7.8 Score=39.00 Aligned_cols=21 Identities=19% Similarity=0.215 Sum_probs=18.8
Q ss_pred EEEEEeccCCchHHHHHHHhC
Q 004351 26 AVLVVGHQTDGKSALVEALMG 46 (759)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G 46 (759)
-|++.|..+|||||+.+.|..
T Consensus 23 ~i~~~G~~g~GKst~~~~l~~ 43 (223)
T 3ld9_A 23 FITFEGIDGSGKTTQSHLLAE 43 (223)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488899999999999999864
No 498
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=49.36 E-value=6.7 Score=40.10 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=21.2
Q ss_pred CCEEEEEeccCCchHHHHHHHhCC
Q 004351 24 APAVLVVGHQTDGKSALVEALMGF 47 (759)
Q Consensus 24 lPqIVVVG~QSsGKSSLLEAL~G~ 47 (759)
-.-+++.|..|+|||+++.+|.+.
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 347999999999999999999863
No 499
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=49.33 E-value=12 Score=38.13 Aligned_cols=25 Identities=32% Similarity=0.365 Sum_probs=21.5
Q ss_pred CCCEEEEEeccCCchHHHHHHHhCC
Q 004351 23 DAPAVLVVGHQTDGKSALVEALMGF 47 (759)
Q Consensus 23 ~lPqIVVVG~QSsGKSSLLEAL~G~ 47 (759)
..|.+++.|+.|+|||++..+|...
T Consensus 37 ~~~~~ll~G~~G~GKt~la~~l~~~ 61 (319)
T 2chq_A 37 NIPHLLFSGPPGTGKTATAIALARD 61 (319)
T ss_dssp CCCCEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCeEEEECcCCcCHHHHHHHHHHH
Confidence 4556999999999999999998754
No 500
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=49.03 E-value=8.7 Score=42.34 Aligned_cols=21 Identities=29% Similarity=0.400 Sum_probs=19.0
Q ss_pred CEEEEEeccCCchHHHHHHHh
Q 004351 25 PAVLVVGHQTDGKSALVEALM 45 (759)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~ 45 (759)
|-|||+|..++|||+|...|.
T Consensus 3 ~~i~i~GptgsGKttla~~La 23 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLA 23 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHH
Confidence 568999999999999998886
Done!