RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 004351
(759 letters)
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like
protein 1A, GTPase, membrane fission, motor Pro; HET:
GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Length = 360
Score = 107 bits (268), Expect = 3e-25
Identities = 74/390 (18%), Positives = 145/390 (37%), Gaps = 53/390 (13%)
Query: 1 MHSLYEAYNELHGLAQEL----------ETPFDAPAVLVVGHQTDGKSALVEALMGFQFN 50
M +L N++ L PA+ VVG Q+ GKS+++E+++G F
Sbjct: 1 MENLISLVNKIQRACTALGDHGDSSALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFL 60
Query: 51 HVGGGTKTRRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEIQSFIEAENMRLER 110
G G TRRP+ L ++ + + + + ++ I+ E R
Sbjct: 61 PRGSGIVTRRPLVLQLQKID--DGTREYAEFLHLPRK--KFTDFAAVRKEIQDETDRE-- 114
Query: 111 ESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQ 170
S S+ I + + NLT+ID PGL A ++ ++ +E++VR+ ++
Sbjct: 115 TGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKD---IENMVRSYIE 171
Query: 171 HREFIILCLEDCS-DWSNATTRRVVMQIDPELKRTIIVSTKLD-----TKIPQFARASDV 224
IIL + + D + + ++ ++DP RT V TK+D T +
Sbjct: 172 KPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSF 231
Query: 225 EVFLSPPACTLDGFILGGSPFFTSVPSGRVGTGHDSVYSSNEEFKQAIFIREMEDITSLE 284
++ ++ G V + + N + A R+ E
Sbjct: 232 KLKY--------PWV------------GVVNRSQADI-NKNVDMIAA---RKREREYFSN 267
Query: 285 EKLGRSLSKQERSRIGVSKLRSFLEELLQKRYMDSVPMIIPLLEKEYCSTTRKLNEINKE 344
R L+ +++G L L + L++ +P I L+ K +L+ + K
Sbjct: 268 TTEYRHLA----NKMGSEHLAKMLSKHLERVIKSRIPGIQSLINKTVLELETELSRLGKP 323
Query: 345 LSTLDEVKLKEKGRVFHDLFLTKLSLLLKG 374
++ + ++ +L L
Sbjct: 324 IAHGTDSRVDPAIMERRSAISKRLELYRAA 353
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin,
fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A
{Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Length = 315
Score = 103 bits (257), Expect = 3e-24
Identities = 82/349 (23%), Positives = 146/349 (41%), Gaps = 42/349 (12%)
Query: 4 LYEAYNELHGL-AQELETPFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPI 62
L N+L + P D P ++VVG Q+ GKS+++E ++G F G G TRRP+
Sbjct: 3 LIPVINKLQDVFNTLGSDPLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPL 62
Query: 63 TLHMKYNPLCELPLCHLASSDVDPTLAQE-KSLQEIQSFIEAENMRLERESNSNQFSAKE 121
L + + P+ + + EI+ I + R+ + SA+
Sbjct: 63 ILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEIIRDTDRM--TGKNKGISAQP 120
Query: 122 IIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLED 181
I +K+ + NLT++D PG+ G + ++ Q + +V A ++ + II+ +
Sbjct: 121 INLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQ---IRRMVMAYIKKQNAIIVAVTP 177
Query: 182 CS-DWSNATTRRVVMQIDPELKRTIIVSTKLDTKIPQFARASDVEVFLSPPACTLDGFIL 240
+ D +N+ ++ ++DPE KRTI V TKLD +D L+ L L
Sbjct: 178 ANTDLANSDALQLAKEVDPEGKRTIGVITKLDLMDK----GTDAMEVLTGRVIPLT---L 230
Query: 241 GGSPFFTSVPSGRVGTGHDSVYSSNEEFKQAIFIREMEDITSLEEKLGRS--LSKQERSR 298
G F + N + I + + + E ++ + K +R
Sbjct: 231 G---FIGVI---------------NRSQEDIIAKKSIRESLKSEILYFKNHPIYKSIANR 272
Query: 299 IGVSKLRSFLEELLQKRYMDSVPMIIPLLEKEYCSTTRKLNEINKELST 347
G + L L +LL D++P + + K L+++ ELST
Sbjct: 273 SGTAYLSKTLNKLLMFHIRDTLPDLKVKVSK-------MLSDVQGELST 314
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial
fission, GT stalk, PH, BSE, membrane fission; HET: 1PE;
3.10A {Rattus norvegicus} PDB: 3snh_A
Length = 772
Score = 105 bits (263), Expect = 1e-23
Identities = 86/400 (21%), Positives = 149/400 (37%), Gaps = 49/400 (12%)
Query: 1 MHSLYEAYNELHGLAQEL--ETPFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKT 58
M L N L + D P + VVG Q+ GKS+++E +G F G G T
Sbjct: 26 MEDLIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT 85
Query: 59 RRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSL---QEIQSFIEAENMRLERESNSN 115
RRP+ L L + + + + K +E++ IEAE R+ +
Sbjct: 86 RRPL----------VLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKG- 134
Query: 116 QFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFI 175
S I ++V + NLT++D PG+ G + ++ Q + ++ + +
Sbjct: 135 -ISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQ---IRDMLMQFVTKENCL 190
Query: 176 ILCLEDCS-DWSNATTRRVVMQIDPELKRTIIVSTKLDTKIPQFARASDVEVFLSPPACT 234
IL + + D +N+ ++ ++DP+ +RTI V TKLD +D L
Sbjct: 191 ILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLD----LMDEGTDARDVLENKLLP 246
Query: 235 LD-GFILGGSPFFTSVPSGRVGTGHDSVYSSNEEFKQAIFIREMEDITSLEEKLGRSLSK 293
L G+I G V + + K E L R L+
Sbjct: 247 LRRGYI------------GVVNRSQKDI----DGKKDITAALAAERKFFLSHPSYRHLA- 289
Query: 294 QERSRIGVSKLRSFLEELLQKRYMDSVPMIIPLLEKEYCSTTRKLNEINKELSTLDEVKL 353
R+G L+ L + L D++P + L+ + S ++++E K
Sbjct: 290 ---DRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVDEYKNFRPDDPARKT 346
Query: 354 KEKGRVFHDLFLTKLSLLLKGTVVAPPDKFGETLQNERIN 393
K ++ F ++G+ E RIN
Sbjct: 347 KALLQMVQQ-FAVDFEKRIEGSGDQIDTY--ELSGGARIN 383
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced
antiviral GTPase, membrane associated, PR binding; 3.50A
{Homo sapiens} PDB: 3zys_B
Length = 608
Score = 102 bits (256), Expect = 8e-23
Identities = 67/364 (18%), Positives = 135/364 (37%), Gaps = 40/364 (10%)
Query: 18 LETPFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLC 77
+E PA+ V+G Q+ GKS+++EAL G G G TR P+ L +K +
Sbjct: 39 VEQDLALPAIAVIGDQSSGKSSVLEALSGVALP-RGSGIVTRCPLVLKLKKLVNEDKWRG 97
Query: 78 HLASSDVDPTLAQEKSLQEIQSFIEAENMRLERESNSNQFSAKEIIIKVEFKYCPNLTII 137
++ D + + E++ I + E S + I +++ + P+LT+I
Sbjct: 98 KVSYQDYEIEI---SDASEVEKEINKAQNAIAGEGMG--ISHELITLEISSRDVPDLTLI 152
Query: 138 DTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCS-DWSNATTRRVVMQ 196
D PG+ A G + + + +++L++ +Q +E I L + + D + + +
Sbjct: 153 DLPGITRVAVGNQPADIGYK---IKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQE 209
Query: 197 IDPELKRTIIVSTKLDTKIPQFARASDVEVFLSPPACTLDGFILGGSPFFTSVPSGRVGT 256
+DPE RTI + TK D G V V
Sbjct: 210 VDPEGDRTIGILTKPDLVDK------------------------GTEDKVVDVVRNLVFH 245
Query: 257 -GHDSVYSSNEEFKQAIFIREMEDITSLEEKLGRS----LSKQERSRIGVSKLRSFLEEL 311
+ ++ + + E+ + E + V L L
Sbjct: 246 LKKGYMIVKCRGQQEIQDQLSLSEALQREKIFFENHPYFRDLLEEGKATVPCLAEKLTSE 305
Query: 312 LQKRYMDSVPMIIPLLEKEYCSTTRKLNEINKELSTLDEVKLKEKGRVFHDLFLTKLSLL 371
L S+P++ +++ + T +L + ++ + K+ + F ++ L
Sbjct: 306 LITHICKSLPLLENQIKETHQRITEELQKYGVDIPEDENEKMFFLIDKVNA-FNQDITAL 364
Query: 372 LKGT 375
++G
Sbjct: 365 MQGE 368
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission,
nucleotide-binding, endocytosis, motor protein; HET:
GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Length = 353
Score = 98.1 bits (244), Expect = 3e-22
Identities = 83/372 (22%), Positives = 140/372 (37%), Gaps = 48/372 (12%)
Query: 1 MHSLYEAYNELHGLAQEL--ETPFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKT 58
M L N L + D P + VVG Q+ GKS+++E +G F G G T
Sbjct: 6 MEDLIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT 65
Query: 59 RRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQ---EIQSFIEAENMRLERESNSN 115
RRP+ L L + + + + K E++ IEAE R+ +
Sbjct: 66 RRPL----------VLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV--TGTNK 113
Query: 116 QFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFI 175
S I ++V + NLT++D PG+ G + ++ Q + ++ + +
Sbjct: 114 GISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQ---IRDMLMQFVTKENCL 170
Query: 176 ILCLEDC-SDWSNATTRRVVMQIDPELKRTIIVSTKLDTKIPQFARASDVEVFLSPPACT 234
IL + SD +N+ +V ++DP+ +RTI V TKLD +D L
Sbjct: 171 ILAVSPANSDLANSDALKVAKEVDPQGQRTIGVITKLDLMDE----GTDARDVLENKLLP 226
Query: 235 LD-GFILGGSPFFTSVPSGRVGTGHDSVYSSNEEFKQAIFIREMEDITSLEEKLGRSLSK 293
L G+I V ++ A E L R L+
Sbjct: 227 LRRGYIG-------------VVNRSQKDIDGKKDITAA---LAAERKFFLSHPSYRHLA- 269
Query: 294 QERSRIGVSKLRSFLEELLQKRYMDSVPMIIPLLEKEYCSTTRKLNEINKELSTLDEVK- 352
R+G L+ L + L D++P + L+ + S +++ E
Sbjct: 270 ---DRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVEEYKNFRPDKHGTDS 326
Query: 353 -LKEKGRVFHDL 363
+ E R++H L
Sbjct: 327 RVDEMLRMYHAL 338
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle
protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB:
3l43_A*
Length = 299
Score = 94.6 bits (235), Expect = 2e-21
Identities = 74/334 (22%), Positives = 126/334 (37%), Gaps = 40/334 (11%)
Query: 1 MHSLYEAYNELHGLAQEL--ETPFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKT 58
M L N L + D P + VVG Q+ GKS+++E +G F G G T
Sbjct: 1 MEDLIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT 60
Query: 59 RRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEIQSFIEAENMRLERESNSNQFS 118
RRP+ L + + H +E++ IEAE R+ + S
Sbjct: 61 RRPLVLQLVNSTTEYAEFLHCKGKKF-------TDFEEVRLEIEAETDRV--TGTNKGIS 111
Query: 119 AKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILC 178
I ++V + NLT++D PG+ G + ++ Q + ++ + +IL
Sbjct: 112 PVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQ---IRDMLMQFVTKENCLILA 168
Query: 179 LEDCS-DWSNATTRRVVMQIDPELKRTIIVSTKLDTKIPQFARASDVEVFLSPPACTLD- 236
+ + D +N+ ++ ++DP+ +RTI V TKLD +D L L
Sbjct: 169 VSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDE----GTDARDVLENKLLPLRR 224
Query: 237 GFILGGSPFFTSVPSGRVGTGHDSVYSSNEEFKQAIFIREMEDITSLEEKLGRSLSKQER 296
G+I V ++ A E L R L+
Sbjct: 225 GYIG-------------VVNRSQKDIDGKKDITAA---LAAERKFFLSHPSYRHLA---- 264
Query: 297 SRIGVSKLRSFLEELLQKRYMDSVPMIIPLLEKE 330
R+G L+ L + L D++P + L+ +
Sbjct: 265 DRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQ 298
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 84.9 bits (209), Expect = 5e-17
Identities = 89/574 (15%), Positives = 179/574 (31%), Gaps = 173/574 (30%)
Query: 266 EEFKQAIFI-REMEDITSLEEKLGRS-------LSKQERSRIGVSKLRSFLEELLQKRYM 317
++ ++I E++ I ++ + + LSKQE V K F+EE+L+ Y
Sbjct: 39 QDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEE---MVQK---FVEEVLRINY- 91
Query: 318 DSVPMIIPLLEKEYCSTTRKLNEINKELSTLDEVKLKEKGRVFHDLFLTKLSLLLKGTVV 377
++ ++ E + ++ +L +VF +++L LK
Sbjct: 92 ---KFLMSPIKTEQRQPSMMTRMYIEQRD-----RLYNDNQVFAKYNVSRLQPYLK---- 139
Query: 378 APPDKFGETLQNERINGGAFVGTDGLQFPHKLIPNAGMRLYG--GA----------QYHR 425
L+ L +L P + + G G+ ++
Sbjct: 140 ---------LRQ------------ALL---ELRPAKNVLIDGVLGSGKTWVALDVCLSYK 175
Query: 426 AMAEFRFMV-----GGIKCPPITREEIVNACGVEDIHDGTNYSRTACVIAVAKARDTFEP 480
+ F + P E + D N++ + + +
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID----PNWT------SRSDHSSNIKL 225
Query: 481 FLHQLGCRLLHILK-RLLPISIYLLQKEGEYLSGHEVFLRRVASAFNNFAESTERACREK 539
+H + L +LK + + +L V + +AFN +C+
Sbjct: 226 RIHSIQAELRRLLKSKPYENCLLVLL---------NVQNAKAWNAFNL-------SCKI- 268
Query: 540 CMEDLVSTTRY--VTWSLHNKNRAGLR--QFLDSFGSTEQSAVLSNSLSMPL-------C 588
L+ TTR+ VT L + + E ++L L
Sbjct: 269 ----LL-TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL 323
Query: 589 QESSFV--SVANEKHDTKPRTD----VKLSQVASGVDSS-SSVQTTETR-----LADLLD 636
+ +A D D V ++ + ++SS + ++ E R L+
Sbjct: 324 TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP 383
Query: 637 NT---------LWNRRLAPSSERIV-----YALVQQ-------IFHGIREYFLASAELKF 675
+ +W + +V Y+LV++ I Y ELK
Sbjct: 384 SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI--YL----ELKV 437
Query: 676 NCFLLMPVVDKLPALLREDLES-----AFEGD------LDNVFDITNLRHSLSQQKSDTE 724
+ AL R ++ F+ D LD F +++ H L +
Sbjct: 438 KL-------ENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF-YSHIGHHLKNIEHPER 489
Query: 725 IEMKRIKKLKEKF---KLIHEQFISHHVMSSLSL 755
+ + R+ L +F K+ H+ + S L+
Sbjct: 490 MTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNT 523
Score = 73.3 bits (179), Expect = 2e-13
Identities = 85/558 (15%), Positives = 152/558 (27%), Gaps = 165/558 (29%)
Query: 6 EAYNELHGLAQELETPFDAPAVLVVGHQTDGKSALV-EAL------MGFQFN----HVGG 54
+ Y +L EL A VL+ G GK+ + + F ++
Sbjct: 135 QPYLKLRQALLELR---PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK- 190
Query: 55 GTKTRRPITLHMKYNPLCELPLCHLASSDVDPTLAQE-KSLQEIQSFIEAENMRLERESN 113
P T+ L +DP I+ I + L R
Sbjct: 191 --NCNSPETVLEMLQKLL---------YQIDPNWTSRSDHSSNIKLRIHSIQAELRR--- 236
Query: 114 SNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESL-VRAKMQHR 172
++ ++ C L ++ +Q+ A+A + + K
Sbjct: 237 --------LLKSKPYENC--LLVLLN--------------VQN-AKAWNAFNLSCK---- 267
Query: 173 EFIILCLEDCSDWSNATTR-RVVMQIDPELKRTIIVS-------TKLDTKIPQFARASDV 224
IL TTR + V T I T + K + D
Sbjct: 268 ---IL----------LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK-SLLLKYLDC 313
Query: 225 EVFLSPP-ACTLDGFILGGSPFFTSVPSGRVGTGHDSVYSSNEEFKQAIFIREMEDITSL 283
P T +P S+ + + D + ++ + +K + L
Sbjct: 314 RPQDLPREVLT-------TNPRRLSIIAESI---RDGL-ATWDNWKHV-------NCDKL 355
Query: 284 EEKLGRSLSKQERSRIGVSKLRSFLEELLQKRYMD------SVPMIIP--LLEKEYC-ST 334
+ SL+ E +K + S IP LL +
Sbjct: 356 TTIIESSLNVLE-------------PAEYRKMFDRLSVFPPSAH--IPTILLSLIWFDVI 400
Query: 335 TRKLNEINKEL--STLDEVKLKEKGRVFHDLFLTKLSLLLKGTVVAPPDKFGETLQNERI 392
+ + +L +L E + KE ++ L L +K +++ L +
Sbjct: 401 KSDVMVVVNKLHKYSLVEKQPKESTISIPSIY---LELKVK-----LENEY--ALHRSIV 450
Query: 393 NGGAFVGTDGLQFPHKLIPNAGMRLYGGAQYHRAMAE--------------FRFMVGGIK 438
+ + + P Y +H E FRF+ I+
Sbjct: 451 D--HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIR 508
Query: 439 CPPITREEIVNACG--VEDIHDGTNYSRTACVIAVAKAR--DTFEPFLHQLGCRLLHI-L 493
NA G + + Y C R + FL ++ L+
Sbjct: 509 HDSTAW----NASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKY 564
Query: 494 KRLLPISIYLLQKEGEYL 511
LL I+ L E E +
Sbjct: 565 TDLLRIA---LMAEDEAI 579
Score = 56.4 bits (135), Expect = 3e-08
Identities = 94/650 (14%), Positives = 167/650 (25%), Gaps = 228/650 (35%)
Query: 108 LERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGL------------IAPAPGRKNRA-- 153
++ E+ +Q+ K+I+ E + N D + I + +
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66
Query: 154 -----LQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVS 208
L Q V+ +F+ L + + Q P + + +
Sbjct: 67 LFWTLLSKQEEMVQ----------KFVEEVLRINYKF--LMSPIKTEQRQPSMMTRMYIE 114
Query: 209 T--KLDTKIPQFA-----RASDVEVF------LSP-PACTLDGFILGGSPFFTSVPSGRV 254
+L FA R L P +DG + G SG+
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG--VLG--------SGK- 163
Query: 255 GTGHDSV--------YSSNEEFKQAIF------IREMEDITSLEEKLGRSLSKQ------ 294
+ Y + IF E + + +KL +
Sbjct: 164 -----TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218
Query: 295 --ERSRIGVSKLRSFLEELL-QKRY------MDSV--PMIIPLLEKEYCS---TTRKLNE 340
++ + +++ L LL K Y + +V C TTR
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS-CKILLTTR---- 273
Query: 341 INKELST-LDEVKLKEKGRVFHDLFLTK---LSLLLKGTVVAPPD--------------K 382
K+++ L H + LT SLLLK P D
Sbjct: 274 -FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI 332
Query: 383 FGETLQNE--RINGGAFVGTDGLQ-----FPHKLIPNAGMRLYGGAQYHRAMAEFRFMVG 435
E++++ + V D L + L P A R + ++ F
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP-AEYR-----KMFDRLSVFP---P 383
Query: 436 GIKCPPIT------------REEIVNACGVEDIHDGTNYSRTACVIAVAKARDTFEPFLH 483
P I +VN YS V K +
Sbjct: 384 SAHIPTILLSLIWFDVIKSDVMVVVNKL--------HKYS------LVEKQPKESTISIP 429
Query: 484 QLGCRL---------LHILKRLL-----------------PISIYLLQKEGEYLSGH--- 514
+ L LH + ++ + Y ++ H
Sbjct: 430 SIYLELKVKLENEYALH--RSIVDHYNIPKTFDSDDLIPPYLDQYFYS----HIGHHLKN 483
Query: 515 -----------EVFL---------RRVASAFNNFAESTERACREKCMEDLVSTTRYVTWS 554
VFL R ++A+N ++ L Y+ +
Sbjct: 484 IEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILN------TLQQLKFYKPYICDN 537
Query: 555 LHNKNRAGLRQFLDSFGSTEQSAVLS---NSLSMPLCQESSFVSVANEKH 601
K + LD E++ + S + L + L E + E H
Sbjct: 538 -DPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEA--IFEEAH 584
Score = 40.6 bits (94), Expect = 0.002
Identities = 42/285 (14%), Positives = 84/285 (29%), Gaps = 87/285 (30%)
Query: 478 FEPFLHQLGCRLLHILKRLLPISIYLLQKEGEYLSGHEV--FLRRVASAFNNFAESTERA 535
FE HQ K +L + + +V + + S E +
Sbjct: 9 FETGEHQYQY------KDILSV---FEDAFVDNFDCKDVQDMPKSILSK-----EEIDHI 54
Query: 536 CREKCMEDLVSTTRYVTWSLHNKNRAGLRQFLDSFGSTEQSAVLSNSLSMPLCQESSFV- 594
K D VS T + W+L +K +++F++ L F+
Sbjct: 55 IMSK---DAVSGTLRLFWTLLSKQEEMVQKFVEEV----------------LRINYKFLM 95
Query: 595 -SVANEKHDTKPRTDVKLSQVASGVDSSSSVQTTETRLADLLDNTLWN--RRLAPSS-ER 650
+ E+ T + + Q + L+N + A + R
Sbjct: 96 SPIKTEQRQPSMMTRMYIEQR----------------------DRLYNDNQVFAKYNVSR 133
Query: 651 IVYALVQQIFHGIREYFLASAELKFNCFLL---MPVVDK----LPALLREDLESAFEGDL 703
+ Q + +R+ L EL+ +L + K L L ++ +
Sbjct: 134 L------QPYLKLRQALL---ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF-- 182
Query: 704 DNVFDITNLRHSLSQQKSDTEIEMKRIKKLKEKFKLIHEQFISHH 748
+F + L S + ++ ++KL + H
Sbjct: 183 -KIFWLN-----LKNCNSPETV-LEMLQKLLYQIDPNWTSRSDHS 220
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 78.6 bits (193), Expect = 5e-15
Identities = 108/612 (17%), Positives = 191/612 (31%), Gaps = 230/612 (37%)
Query: 188 ATTRRVVMQIDPELKRTIIVSTKLDTKIPQFARASDV-EVFLSP-PACTLDGFILGGSP- 244
+TR + + L+ ++V T F AS + E F P T +GF P
Sbjct: 4 YSTRPLTLS-HGSLEHVLLVPTAS------FFIASQLQEQFNKILPEPT-EGFAADDEPT 55
Query: 245 --------F--FTS--VPSGRVGTGHDSVYSSNEEFKQAIFIREMEDITSLEEKL----- 287
F + S V +VG + EF+ ++ DI +L KL
Sbjct: 56 TPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENC-YLEG-NDIHALAAKLLQEND 113
Query: 288 --------------------GRSLSKQERSRI------GVSKL----------RSFLEEL 311
R K+ S + G ++L + EEL
Sbjct: 114 TTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEEL 173
Query: 312 LQKRYMDSVPMIIPLLEKEYCSTTRKLNEINKELSTLDEVKLKEKGRVFHDLFLTKLSLL 371
+ Y ++ L++ + L+E+ + +TLD K+ +G L++L
Sbjct: 174 -RDLYQTYHVLVGDLIK----FSAETLSELIR--TTLDAEKVFTQG----------LNIL 216
Query: 372 --LKGTVVAPPDKFGETLQNERINGGAFVGTDGLQFPHKLIPNAGMRLYGGAQYHRAMAE 429
L+ P ++ + + P LI G + A Y A+
Sbjct: 217 EWLENPSNTPDK--------------DYLLSIPISCP--LI---G--VIQLAHY-VVTAK 254
Query: 430 FRFMVGGIKCPPITREEIVNACGV-EDIHDGTNYSRTACVIAVAKARDTFEPFLHQLGCR 488
+ G P R + A G + + TA IA + ++F +
Sbjct: 255 ----LLGF-TPGELRSYLKGATGHSQGL-------VTAVAIAETDSWESF----FVSVRK 298
Query: 489 LLHILKRLLPISIYLLQKEGEYLSGHEVFLRRVASAFNNFAESTE------------RAC 536
+ +L ++ G + +E + + + +S E
Sbjct: 299 AITVL-------FFI----G--VRCYEAY-PNTSLPPSILEDSLENNEGVPSPMLSISNL 344
Query: 537 REKCMEDLVSTT-------RYVTWSLHNKNRAGLRQFLDSFGSTEQSAVLSNSLSMPLCQ 589
++ ++D V+ T + V SL N G + V+S P
Sbjct: 345 TQEQVQDYVNKTNSHLPAGKQVEISLVN----GAKNL-----------VVSGP---P--- 383
Query: 590 ESSFVSVANEKHDTKPRTDVKLSQVASGVDSSSSVQTTETRLADLLDNTLWNRRLAPSSE 649
S + K SG+D S R P SE
Sbjct: 384 -QSLYGLNLTLRKAK---------APSGLDQS--------R--------------IPFSE 411
Query: 650 RIVYALVQQIFHGIREYFLA-SAELKFNCFLLMPVVDKLPA-LLREDLESAFEG-DLD-N 705
R + F R FL ++ F+ LL+P D + L++ ++ F D+
Sbjct: 412 RKL------KFS-NR--FLPVAS--PFHSHLLVPASDLINKDLVKNNVS--FNAKDIQIP 458
Query: 706 VFDI---TNLRH 714
V+D ++LR
Sbjct: 459 VYDTFDGSDLRV 470
Score = 53.9 bits (129), Expect = 2e-07
Identities = 82/546 (15%), Positives = 159/546 (29%), Gaps = 191/546 (34%)
Query: 289 RSLSKQE---RSRIGVSKLRSFLEELLQKRYMDSVPM-------------IIPLLEK--E 330
R L+ + V F+ LQ+++ +P L+ K
Sbjct: 7 RPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLG 66
Query: 331 YCSTTRKLNEINKELSTLDEVKLKEKGRVFHDLFLTK-----LSLLLKGTVVAPPDKFGE 385
Y S + ++ D+V L F + +L L+ L K E
Sbjct: 67 YVS--SLVEP--SKVGQFDQV-LNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKE 121
Query: 386 TLQNERINGGAFVGTDGLQFP-HKLIPNAGMRLYGGAQYHRA--MAEFRFMVGG----IK 438
++N + P K +A L+ A +A F GG
Sbjct: 122 LIKN------YITARIMAKRPFDKKSNSA---LFRAVGEGNAQLVAIF----GGQGNTDD 168
Query: 439 C-----------PPITREEIVNACGVEDIHDGTNYSRTACVIAVAKARDTFEPFLHQLGC 487
+ + I + + + + E G
Sbjct: 169 YFEELRDLYQTYHVLVGDLIKFS--------------AETLSELIRTTLDAEKV-FTQGL 213
Query: 488 RLLHILKR---------LL--PIS---IYLLQKEGEYLSGHEVFLRRVASAFNNFAESTE 533
+L L+ LL PIS I ++Q L+ + V + + +
Sbjct: 214 NILEWLENPSNTPDKDYLLSIPISCPLIGVIQ-----LAHYVVTAKLLGFTPGELRSYLK 268
Query: 534 RACREKCMEDLVSTTRYV----TWSLHNKNRAGLRQFLDSFGSTEQSAVLSNSLSMPLCQ 589
A + LV+ + +W +SF + + A+
Sbjct: 269 GAT--GHSQGLVTAV-AIAETDSW--------------ESFFVSVRKAI----------- 300
Query: 590 ESSFVSVANEKHDTKPRTDVKLSQVASGVDSSS-------SVQ-TTETRLADLLDNTLWN 641
F + ++ P T + S + ++++ S+ T+ ++ D ++ T N
Sbjct: 301 TVLF-FIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKT--N 357
Query: 642 RRLAPSSERIVYALVQQIFHGIREYFLASAELKFN---CFLLMPVVDKLPALLREDLESA 698
L P+ +++ +LV N VV P + L
Sbjct: 358 SHL-PAGKQVEISLV-------------------NGAKNL----VVSGPP----QSLYG- 388
Query: 699 FEGDLDNVFDITNLRHSLSQQKSDTEIEMKRIKKLKEKFKLIHEQF--IS---HHVMSSL 753
L +L + K+ + ++ RI + K K +F ++ H S L
Sbjct: 389 -------------LNLTLRKAKAPSGLDQSRIPFSERKLK-FSNRFLPVASPFH---SHL 431
Query: 754 SLAPSA 759
L P++
Sbjct: 432 -LVPAS 436
Score = 45.8 bits (108), Expect = 6e-05
Identities = 77/475 (16%), Positives = 131/475 (27%), Gaps = 192/475 (40%)
Query: 9 NELHGLAQELETPFDAP-------------AVLVVGHQTD--GKSALVEA-------LMG 46
N++H LA +L D A ++ D SAL A L+
Sbjct: 99 NDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVA 158
Query: 47 FQFNHVGG-GTKTR-----RPITLHMKYNPL-------CELPLCHLASSDVDPTLAQEKS 93
F GG G R L+ Y+ L L L + +D +
Sbjct: 159 -IF---GGQGNTDDYFEELR--DLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQG 212
Query: 94 LQEIQSFIEAENMRLERE-SNSNQFSAKEIIIKVEF-KYCPNLTIID-TPG--------- 141
L I ++E + +++ S S +I ++ Y ++ TPG
Sbjct: 213 LN-ILEWLENPSNTPDKDYLLSIPISCP-LIGVIQLAHYVVTAKLLGFTPGELRSYLKGA 270
Query: 142 -----------LIAPAPGRKNRALQDQARAVESL----VRAKMQHREFIILCL-----ED 181
IA ++ +A+ L VR + + L ED
Sbjct: 271 TGHSQGLVTAVAIAETDSWES-FFVSVRKAITVLFFIGVRC---YEAYPNTSLPPSILED 326
Query: 182 CSDWSNATTRR--VVMQIDPE-LKRTIIVSTKLDTKIPQFARASDVEVFL--SPPACTLD 236
+ + + + E ++ + K ++ +P VE+ L
Sbjct: 327 SLENNEGVPSPMLSISNLTQEQVQDYV---NKTNSHLPA---GKQVEISLVNGA-----K 375
Query: 237 GFILGGSPFFTSVPSGRVGTGHDSVYSSNEEFKQAIFIREMEDITSLEEKLGRSLSKQER 296
++ G P S+Y N +L + ++ S ++
Sbjct: 376 NLVVSGPP--------------QSLYGLN---------------LTLRKA--KAPSGLDQ 404
Query: 297 SRIGVS--KLR---SFLEELLQKRYMDSVPMIIPLLEKEYCSTTRKLNEINKELSTLDEV 351
SRI S KL+ FL P+ P
Sbjct: 405 SRIPFSERKLKFSNRFL------------PVASP-------------------------- 426
Query: 352 KLKEKGRVFHDLFLTKLSLLLKGTVVAPPDKFGETLQNERINGGAFVGTDGLQFP 406
FH S LL D + L + +F D +Q P
Sbjct: 427 --------FH-------SHLLVPAS----DLINKDLVKNNV---SFNAKD-IQIP 458
Score = 43.1 bits (101), Expect = 4e-04
Identities = 30/161 (18%), Positives = 50/161 (31%), Gaps = 26/161 (16%)
Query: 559 NRAGLRQFLDSFGSTEQSAVLSNSLSMPLCQ-ESSFVSVANE-----KHDTKPRTDVKL- 611
+ R S GS E ++ + Q + F + E D +P T +L
Sbjct: 2 DAYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELV 61
Query: 612 ----SQVASGVDSSSSVQTTE---TRLADLLDNTLWNR---RLAPSSERIVYALVQQIFH 661
V+S V+ S Q + L + + L LA + + +
Sbjct: 62 GKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKE 121
Query: 662 GIREYFLASAELKFNCFLLMPVVDKLPALLREDLESAFEGD 702
I+ Y A K P K + L + EG+
Sbjct: 122 LIKNYITARIMAKR------PFDKKSNSAL---FRAVGEGN 153
Score = 42.7 bits (100), Expect = 5e-04
Identities = 64/342 (18%), Positives = 107/342 (31%), Gaps = 121/342 (35%)
Query: 5 YEAYNELHGLAQELETPFDAPAVL--VVGHQTDGKSALVEALMG----FQFNHVGGGTKT 58
Y +L G TP + + L GH +A+ A F +
Sbjct: 249 YVVTAKLLGF-----TPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVS-------V 296
Query: 59 RRPITL--------HMKYNPLCELPLCHLASSDVD-----PT--LA-QEKSLQEIQSFIE 102
R+ IT+ + Y P LP L S ++ P+ L+ + +++Q ++
Sbjct: 297 RKAITVLFFIGVRCYEAY-PNTSLPPSILEDS-LENNEGVPSPMLSISNLTQEQVQDYVN 354
Query: 103 AENMRLERE-----SNSNQFSAKEIIIKVEFKYCPNLTIIDT--P----GLIAPAPGRKN 151
N L S N AK +++ + P GL RK
Sbjct: 355 KTNSHLPAGKQVEISLVN--GAKNLVV--------------SGPPQSLYGLNLTL--RKA 396
Query: 152 RAL--QDQARAVESLVRAKMQHREFI-ILC------LEDCSDWSNATTRRVVMQIDPELK 202
+A DQ+R S + K +R F+ + L SD I+ +L
Sbjct: 397 KAPSGLDQSRIPFSERKLKFSNR-FLPVASPFHSHLLVPASD-----------LINKDLV 444
Query: 203 RTIIVSTKLDTKIPQFA-------RASDVEV--------FLSP---PACT-------LDG 237
+ + D +IP + R + P T LD
Sbjct: 445 KNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILD- 503
Query: 238 FILGGSPFFTS-VPSGRVGTGHDSV------YSSNEE--FKQ 270
F GG+ + GTG + + +++ FKQ
Sbjct: 504 FGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDYGFKQ 545
Score = 42.7 bits (100), Expect = 5e-04
Identities = 51/285 (17%), Positives = 84/285 (29%), Gaps = 106/285 (37%)
Query: 414 GMRLYG---GAQ--YHRAMAEFRFMVGGIKCPPITREEIV-NACGVEDIHDGT------- 460
GM LY AQ ++RA F+ G + +IV N IH G
Sbjct: 1632 GMDLYKTSKAAQDVWNRADNHFKDTYG------FSILDIVINNPVNLTIHFGGEKGKRIR 1685
Query: 461 -NYSRTACVIAVAKARDTFEPFLHQLGCRLLHIL----KRLL-------P------ISIY 502
NYS + + E ++ K LL P + +
Sbjct: 1686 ENYSAMIFE-TIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAF 1744
Query: 503 -LLQKEG-----EYLSGH---EVFLRRVASAFNNFAESTERACREKCM--EDLVSTTRYV 551
L+ +G +GH E +A + A+ M E LV Y
Sbjct: 1745 EDLKSKGLIPADATFAGHSLGEY------AALASLADV---------MSIESLVEVVFY- 1788
Query: 552 TWSLHNKNRAGLRQFL---DSFGSTEQS--AVLSNSLSMPLCQES-------------SF 593
R Q D G + A+ ++ QE+
Sbjct: 1789 --------RGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWL 1840
Query: 594 VSVANEKHDTKPRTDVKLSQ-VASGVDSSSSVQTTETRLADLLDN 637
V + N ++ + Q VA+G ++ T + ++L+
Sbjct: 1841 VEIVN--YNVEN------QQYVAAG--DLRALDT----VTNVLNF 1871
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex,
membrane protein, endocytosis; HET: ANP; 3.10A {Mus
musculus}
Length = 550
Score = 46.3 bits (109), Expect = 3e-05
Identities = 64/446 (14%), Positives = 125/446 (28%), Gaps = 45/446 (10%)
Query: 8 YNELHGLAQELETPFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGG-TKTRRPITLHM 66
+ H A E P VLV G + GK++ ++ L+ + G T M
Sbjct: 49 FGSFHSPALEDADFDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVM 108
Query: 67 KYNPLCELPLCHLASSDVDPTLAQEKSLQEIQSFIEAENMRLERESNSNQFSAKEIIIKV 126
+P L VDP EK +++ F N F + + ++
Sbjct: 109 HGETEGTVPGNALV---VDP----EKPFRKLNPF-------------GNTFLNRFMCAQL 148
Query: 127 EFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWS 186
+ +++IIDTPG+++ A R +R D + + IIL +
Sbjct: 149 PNQVLESISIIDTPGILSGAKQRVSRGY-DFPAVLRWFAERV----DLIILLFDAHKLEI 203
Query: 187 NATTRRVVMQIDPELKRTIIVSTKLDTKIPQFARASDVEVFLSPPACTLDGFILGGSPFF 246
+ + + + +V K D Q + V L + G+P
Sbjct: 204 SDEFSEAIGALRGHEDKIRVVLNKADMVETQ--QLMRVYGALMWALGK-----VVGTPEV 256
Query: 247 TSVPSGRVGTGHDSVYSSNEEFKQAIFIREMEDITSLEEKLGRSLSKQERSRIGVSKLRS 306
V G + + N + DI L R + ++ +
Sbjct: 257 LRVYIGSFWS-QPLLVPDNRRLFELEEQDLFRDIQGLPRHAALRKLNDLVKRARLVRVHA 315
Query: 307 FLEELLQKRYM------DSVPMIIPLLEKEYCSTTRKLNEINKELSTLDEVKLKEKGRVF 360
++ L+K + +I L + + + +S D ++ +
Sbjct: 316 YIISYLKKEMPTVFGKENKKKQLILKLPVIFAKIQLEHH-----ISPGDFPDCQKMQELL 370
Query: 361 HDLFLTKLSLLLKGTVVAPPDKFGETLQNERINGGAFVGTDGLQFPHKLIPNAGMRLYGG 420
TK L + A D + +
Sbjct: 371 MAHDFTKFHSLKPKLLEALDDMLAQDIAKLMPLLRQEELESVEAGVAGGAFEGTRMGPFV 430
Query: 421 AQYHRAMAEFRFMVGGIKCPPITREE 446
+ E + ++
Sbjct: 431 ERGPDEAIEDGEEGSEDDAEWVVTKD 456
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 45.0 bits (105), Expect = 9e-05
Identities = 56/354 (15%), Positives = 112/354 (31%), Gaps = 25/354 (7%)
Query: 3 SLYEAYNELHGLAQELETPFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPI 62
SL ++ ++ L+ +LV+G GKS + AL+G T
Sbjct: 50 SLERDIEDITIASKNLQQG--VFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLT 107
Query: 63 TLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEIQSFIEAENMRLERESNSNQFSAKEI 122
L +Y P E + + P ++ + + AE +LE+E
Sbjct: 108 VL--RYGP--EKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAKKLEQEKKQAFPDVDYA 163
Query: 123 IIKVEFKYCPN-LTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLED 181
+++ + I+D+PGL N ++ + IL +
Sbjct: 164 VVEYPLTLLQKGIEIVDSPGL--------NDTEARNELSLGYVNNCHA------ILFVMR 209
Query: 182 CSDWSNATTRRVVMQIDPEL-KRTIIVSTKLDTKIPQFARASDVEVFLSPPACTLDGFIL 240
S RR + + D DVE L L
Sbjct: 210 ASQPCTLGERRYLENYIKGRGLTVFFLVNAWDQVRESLIDPDDVEE-LQASENRLRQVFN 268
Query: 241 GGSPFFTSVPSGRVGTGHDSVYSSNEEFKQAIFIREMEDITSLEEKLGRSLSKQERSRIG 300
+ +V + SS + ++ + + + + K SL+
Sbjct: 269 ANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLTRERA 328
Query: 301 VSKLRSFLEELLQ--KRYMDSVPMIIPLLEKEYCSTTRKLNEINKELSTLDEVK 352
+++LR ++V IPLLE++ ++++ + E + L ++
Sbjct: 329 IAELRQVRTLARLACNHTREAVARRIPLLEQDVNELKKRIDSVEPEFNKLTGIR 382
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP,
complex, structural G NPPSFA; HET: GDP; 2.35A
{Pyrococcus horikoshii}
Length = 357
Score = 36.0 bits (83), Expect = 0.045
Identities = 19/124 (15%), Positives = 47/124 (37%), Gaps = 20/124 (16%)
Query: 116 QFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFI 175
F+ + I + IIDTPGL+ +R + ++ +E +++ +
Sbjct: 198 PFTTRGINVGQFEDGYFRYQIIDTPGLL-------DRPISERNE-IEKQAILALRYLGNL 249
Query: 176 ILCLEDCSD---WSNATTRRVVMQIDPEL--KRTIIVSTKLD-------TKIPQFARASD 223
I+ + D S+ + + ++ E ++V K+D ++ +F +
Sbjct: 250 IIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENIKRLEKFVKEKG 309
Query: 224 VEVF 227
+
Sbjct: 310 LNPI 313
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.5 bits (78), Expect = 0.048
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 11/32 (34%)
Query: 293 KQERSRIGVSKLRSFLEELLQKRYM-DSVPMI 323
KQ + KL++ L K Y DS P +
Sbjct: 19 KQA-----LKKLQASL-----KLYADDSAPAL 40
Score = 33.4 bits (75), Expect = 0.11
Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 18/36 (50%)
Query: 726 EMKRIKKLKEKFKLIHEQFISHHVMSSLSL-AP-SA 759
E + +KKL+ +SL L A SA
Sbjct: 18 EKQALKKLQ----------------ASLKLYADDSA 37
Score = 29.9 bits (66), Expect = 1.8
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 14/41 (34%)
Query: 657 QQIFHGIREYFLASAELKFNCFLLMPVVDKLPAL-LREDLE 696
Q + ++ L ++ LK L D PAL ++ +E
Sbjct: 20 QAL----KK--LQAS-LK----LYAD--DSAPALAIKATME 47
Score = 29.1 bits (64), Expect = 2.8
Identities = 11/73 (15%), Positives = 25/73 (34%), Gaps = 43/73 (58%)
Query: 90 QEKSLQEIQSFIEAENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGR 149
++++L+++Q+ +++L Y D+ AP
Sbjct: 18 EKQALKKLQA-----SLKL---------------------YAD-----DS----AP---- 38
Query: 150 KNRALQDQARAVE 162
AL +A +E
Sbjct: 39 ---ALAIKA-TME 47
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria,
structural genomics, structural genomics consortium,
SGC, unknown function; HET: GDP; 2.01A {Plasmodium
falciparum}
Length = 228
Score = 32.4 bits (74), Expect = 0.35
Identities = 22/101 (21%), Positives = 38/101 (37%), Gaps = 13/101 (12%)
Query: 117 FSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFII 176
F+ K + + IIDTPGL+ +RA ++ +E + H +I
Sbjct: 61 FTTKNLYVGHFDHKLNKYQIIDTPGLL-------DRAFEN-RNTIEMTTITALAHINGVI 112
Query: 177 LCLEDCSD---WSNATTRRVVMQIDPEL--KRTIIVSTKLD 212
L + D S+ + + I K +I K+D
Sbjct: 113 LFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKID 153
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 32.1 bits (72), Expect = 0.38
Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 5/34 (14%)
Query: 88 LAQEKSLQEIQSFIEAENMRLERESNSNQFSAKE 121
+AQ L + E E++R RE + +
Sbjct: 74 IAQADRLTQ-----EPESIRKWREEQRKRLQELD 102
Score = 29.0 bits (64), Expect = 4.8
Identities = 5/32 (15%), Positives = 21/32 (65%)
Query: 90 QEKSLQEIQSFIEAENMRLERESNSNQFSAKE 121
+EK+ ++++ + + ++ ++E+ +N+ + K
Sbjct: 113 REKAKKDLEEWNQRQSEQVEKNKINNRIADKA 144
>3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8,
structural genomics, P protein structure initiative;
2.00A {Bacteroides vulgatus atcc 8482}
Length = 310
Score = 30.9 bits (70), Expect = 1.5
Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 11/65 (16%)
Query: 649 ERIVYALVQQIFHGIREYFLASAELKFNCF--------LLMPVVDKLPAL---LREDLES 697
E + L +QI G+ S + L + KLP L L D+E+
Sbjct: 77 ETLFGLLTEQILAGLCFGQENSKNATDDNEPCRETASLLAARFISKLPELRRILATDVEA 136
Query: 698 AFEGD 702
A+ GD
Sbjct: 137 AYYGD 141
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex,
transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Length = 460
Score = 30.5 bits (68), Expect = 2.4
Identities = 29/168 (17%), Positives = 49/168 (29%), Gaps = 29/168 (17%)
Query: 5 YEAYNELH-GLAQELETPFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRP-- 61
+ LH L + + F+ P V++VG GK++L L + +P
Sbjct: 118 MKYIYNLHFMLEKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNA-----YQPLY 172
Query: 62 ---------------ITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEIQSFIE---- 102
I+ + L S TL K Q +
Sbjct: 173 INLDPQQPIFTVPGCISATPISDILDAQLPTWGQSLTSGATLLHNK--QPMVKNFGLERI 230
Query: 103 AENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRK 150
EN L E S + ++ + + I+DTP +
Sbjct: 231 NENKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDENLA 278
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 29.4 bits (65), Expect = 4.2
Identities = 15/102 (14%), Positives = 32/102 (31%), Gaps = 8/102 (7%)
Query: 27 VLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLC--------ELPLCH 78
++VVG GKS L+ +L + I ++ +L L
Sbjct: 21 LMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTV 80
Query: 79 LASSDVDPTLAQEKSLQEIQSFIEAENMRLERESNSNQFSAK 120
+ + + + I S+I+ + R + +
Sbjct: 81 VDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHI 122
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 29.3 bits (65), Expect = 5.0
Identities = 29/184 (15%), Positives = 53/184 (28%), Gaps = 29/184 (15%)
Query: 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTR 191
PN+ D PG+ + L + K +F I+ +
Sbjct: 120 PNVVFWDLPGIGST-----------NFPPDTYLEKMKFYEYDFFII---ISATRFKKNDI 165
Query: 192 RVVMQIDPELKRTIIVSTKLDTKIPQFARASDVEVFLSPPACTLDGFILGGSPFFTSVPS 251
+ I K V TK+D + + F +
Sbjct: 166 DIAKAISMMKKEFYFVRTKVD-SDITNEADGEPQTFDKE-------------KVLQDIRL 211
Query: 252 GRVGTGHDSVYSSNEEFKQAIFIREMEDITSLEEKLGRSLSKQERSRIGVSKLRSFLEEL 311
V T ++ + F + D L +KL L +R VS L + + +
Sbjct: 212 NCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYKRHNFMVS-LPNITDSV 270
Query: 312 LQKR 315
++K+
Sbjct: 271 IEKK 274
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography,
emerald biostructures, ATP-binding, cytoplasm,
nucleotide-binding; HET: 5GP; 1.95A {Anaplasma
phagocytophilum}
Length = 231
Score = 27.9 bits (63), Expect = 9.3
Identities = 6/27 (22%), Positives = 13/27 (48%)
Query: 91 EKSLQEIQSFIEAENMRLERESNSNQF 117
E++ I + + AE M+ R+ +
Sbjct: 196 EETADRISNILRAEQMKTCRQVGLREL 222
>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain,
oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus
jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*
Length = 313
Score = 28.3 bits (64), Expect = 9.7
Identities = 14/75 (18%), Positives = 28/75 (37%), Gaps = 27/75 (36%)
Query: 446 EIVNACGVEDIHDGTNYSRTACVIAVAKA--RDTFEPFLHQLGCRLLHILKRLLPISIYL 503
+I+ G G+ + A ++ V + + KRLL +S Y+
Sbjct: 220 QIIRLKG------GSEFGPAAAILNVVRCIVNNE----------------KRLLTLSAYV 257
Query: 504 LQKEGEYLSGHEVFL 518
+GE+ +V +
Sbjct: 258 ---DGEFDGIRDVCI 269
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.385
Gapped
Lambda K H
0.267 0.0610 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,381,814
Number of extensions: 700763
Number of successful extensions: 1477
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1449
Number of HSP's successfully gapped: 49
Length of query: 759
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 658
Effective length of database: 3,881,772
Effective search space: 2554205976
Effective search space used: 2554205976
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.5 bits)