Query 004352
Match_columns 759
No_of_seqs 652 out of 4151
Neff 11.7
Searched_HMMs 29240
Date Mon Mar 25 22:29:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004352.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004352hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 2E-39 6.9E-44 354.1 42.3 524 86-648 63-595 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.9E-39 6.6E-44 354.2 39.8 487 181-682 84-593 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 1.6E-27 5.4E-32 244.4 46.9 364 295-671 8-371 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 1.8E-27 6.2E-32 244.0 46.0 378 261-651 9-387 (388)
5 4g26_A Pentatricopeptide repea 100.0 6.5E-27 2.2E-31 242.1 23.0 185 149-333 29-222 (501)
6 2gw1_A Mitochondrial precursor 99.9 1.2E-24 4.2E-29 232.6 40.2 457 181-677 6-487 (514)
7 4g26_A Pentatricopeptide repea 99.9 1.2E-26 4.2E-31 240.0 23.0 184 114-297 29-221 (501)
8 2gw1_A Mitochondrial precursor 99.9 6.2E-24 2.1E-28 227.1 40.4 459 146-643 6-489 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 1.2E-22 4.2E-27 212.9 39.6 325 321-680 26-370 (450)
10 3fp2_A TPR repeat-containing p 99.9 1.8E-23 6.3E-28 224.7 33.2 445 181-674 25-497 (537)
11 2y4t_A DNAJ homolog subfamily 99.9 2.1E-22 7.3E-27 211.0 38.9 366 269-671 10-413 (450)
12 3fp2_A TPR repeat-containing p 99.9 5E-22 1.7E-26 213.5 40.6 444 145-631 24-491 (537)
13 1xi4_A Clathrin heavy chain; a 99.9 8E-18 2.7E-22 183.7 63.6 377 220-657 989-1375(1630)
14 1xi4_A Clathrin heavy chain; a 99.9 9.9E-17 3.4E-21 175.3 67.6 570 37-693 982-1584(1630)
15 3ieg_A DNAJ homolog subfamily 99.9 5.8E-20 2E-24 186.1 39.8 318 323-675 5-342 (359)
16 3ieg_A DNAJ homolog subfamily 99.9 3.1E-20 1.1E-24 188.1 35.9 302 390-700 2-334 (359)
17 2xm6_A Protein corresponding t 99.9 3E-18 1E-22 180.7 49.8 382 320-732 38-467 (490)
18 2xm6_A Protein corresponding t 99.9 1.7E-17 5.9E-22 174.9 52.8 352 285-667 38-433 (490)
19 3hym_B Cell division cycle pro 99.9 3.9E-19 1.3E-23 177.6 32.9 292 390-689 21-322 (330)
20 3hym_B Cell division cycle pro 99.9 6.8E-19 2.3E-23 175.8 33.2 292 353-653 19-321 (330)
21 2ooe_A Cleavage stimulation fa 99.8 2.3E-17 8E-22 175.8 43.2 436 204-700 2-491 (530)
22 1fch_A Peroxisomal targeting s 99.8 2.3E-19 7.7E-24 182.4 25.1 286 404-699 38-357 (368)
23 2ooe_A Cleavage stimulation fa 99.8 6.2E-17 2.1E-21 172.5 43.7 440 27-525 2-492 (530)
24 1fch_A Peroxisomal targeting s 99.8 1.3E-18 4.3E-23 176.8 25.5 309 330-665 34-358 (368)
25 4eqf_A PEX5-related protein; a 99.8 1.5E-18 5E-23 176.0 24.9 262 428-697 67-352 (365)
26 4g1t_A Interferon-induced prot 99.8 8.9E-17 3.1E-21 169.3 37.0 386 321-739 51-466 (472)
27 4g1t_A Interferon-induced prot 99.8 9.6E-17 3.3E-21 169.0 36.1 277 371-665 153-458 (472)
28 3mkr_A Coatomer subunit epsilo 99.8 1.5E-17 5E-22 160.8 27.1 272 401-694 9-287 (291)
29 3cv0_A Peroxisome targeting si 99.8 1.6E-17 5.5E-22 165.6 26.9 261 431-700 26-314 (327)
30 4eqf_A PEX5-related protein; a 99.8 1.1E-17 3.8E-22 169.5 24.9 274 356-663 65-353 (365)
31 1b89_A Protein (clathrin heavy 99.8 1.5E-16 5.2E-21 155.9 30.9 289 9-342 8-303 (449)
32 3mkr_A Coatomer subunit epsilo 99.8 2.4E-17 8.1E-22 159.4 24.7 255 433-706 6-267 (291)
33 3cv0_A Peroxisome targeting si 99.8 3.6E-17 1.2E-21 163.0 24.5 281 355-665 20-314 (327)
34 1b89_A Protein (clathrin heavy 99.8 8.3E-17 2.8E-21 157.7 22.6 346 299-698 16-369 (449)
35 3uq3_A Heat shock protein STI1 99.7 9.1E-16 3.1E-20 146.9 26.1 223 428-665 7-235 (258)
36 2pl2_A Hypothetical conserved 99.7 2.4E-16 8.2E-21 145.5 20.4 198 494-699 3-212 (217)
37 3e4b_A ALGK; tetratricopeptide 99.7 2E-15 6.7E-20 156.2 26.2 188 498-702 178-388 (452)
38 3e4b_A ALGK; tetratricopeptide 99.7 3.3E-15 1.1E-19 154.5 27.1 377 293-700 10-420 (452)
39 3uq3_A Heat shock protein STI1 99.7 2.6E-15 8.9E-20 143.7 24.3 224 461-700 5-235 (258)
40 2pl2_A Hypothetical conserved 99.7 2.5E-15 8.6E-20 138.6 21.9 201 458-665 2-213 (217)
41 3u4t_A TPR repeat-containing p 99.7 7.5E-15 2.5E-19 141.7 25.9 238 431-675 8-257 (272)
42 3u4t_A TPR repeat-containing p 99.7 4E-15 1.4E-19 143.6 23.2 236 462-706 4-253 (272)
43 2h6f_A Protein farnesyltransfe 99.7 6.4E-15 2.2E-19 147.0 24.1 195 462-663 98-302 (382)
44 2h6f_A Protein farnesyltransfe 99.7 2E-14 6.9E-19 143.4 26.5 241 427-677 98-357 (382)
45 4e6h_A MRNA 3'-END-processing 99.7 2.8E-12 9.4E-17 136.7 43.7 474 162-682 48-584 (679)
46 1ouv_A Conserved hypothetical 99.7 2E-13 6.7E-18 131.6 32.0 223 460-701 5-251 (273)
47 2ho1_A Type 4 fimbrial biogene 99.7 3.7E-14 1.3E-18 135.0 25.8 206 462-674 38-244 (252)
48 2q7f_A YRRB protein; TPR, prot 99.6 8.5E-15 2.9E-19 138.6 20.5 210 460-677 22-231 (243)
49 1ouv_A Conserved hypothetical 99.6 3.6E-13 1.2E-17 129.7 32.0 229 425-674 5-257 (273)
50 2vq2_A PILW, putative fimbrial 99.6 6.8E-14 2.3E-18 130.5 25.5 199 462-665 9-210 (225)
51 1xnf_A Lipoprotein NLPI; TPR, 99.6 2.4E-14 8.3E-19 138.4 22.3 244 439-695 18-269 (275)
52 2vq2_A PILW, putative fimbrial 99.6 8.6E-14 2.9E-18 129.8 25.2 201 495-700 7-210 (225)
53 2ho1_A Type 4 fimbrial biogene 99.6 9.3E-14 3.2E-18 132.2 25.7 201 496-701 37-238 (252)
54 3vtx_A MAMA; tetratricopeptide 99.6 6.7E-14 2.3E-18 125.7 22.3 172 495-673 4-175 (184)
55 1xnf_A Lipoprotein NLPI; TPR, 99.6 7.9E-15 2.7E-19 141.8 17.3 223 16-245 17-244 (275)
56 2q7f_A YRRB protein; TPR, prot 99.6 3.1E-14 1E-18 134.7 20.4 203 495-706 22-225 (243)
57 4e6h_A MRNA 3'-END-processing 99.6 1.6E-11 5.3E-16 130.9 42.4 444 19-491 47-571 (679)
58 3spa_A Mtrpol, DNA-directed RN 99.6 3.5E-15 1.2E-19 158.3 13.1 112 182-293 128-243 (1134)
59 3spa_A Mtrpol, DNA-directed RN 99.6 3.6E-15 1.2E-19 158.1 12.8 119 145-263 126-248 (1134)
60 4a1s_A PINS, partner of inscut 99.6 2.8E-14 9.6E-19 147.1 19.1 265 433-700 55-371 (411)
61 3vtx_A MAMA; tetratricopeptide 99.6 2.5E-13 8.5E-18 121.9 21.7 169 530-706 4-173 (184)
62 3sf4_A G-protein-signaling mod 99.6 8.6E-14 2.9E-18 143.2 20.3 271 429-700 12-335 (406)
63 3ro2_A PINS homolog, G-protein 99.6 1.3E-13 4.4E-18 137.8 19.3 264 434-700 13-331 (338)
64 2ond_A Cleavage stimulation fa 99.6 3.8E-12 1.3E-16 124.7 28.9 221 443-671 33-273 (308)
65 4a1s_A PINS, partner of inscut 99.5 1.1E-13 3.7E-18 142.6 18.7 278 360-671 52-375 (411)
66 3sf4_A G-protein-signaling mod 99.5 9.3E-14 3.2E-18 143.0 18.0 276 359-665 12-335 (406)
67 4abn_A Tetratricopeptide repea 99.5 2.3E-13 7.8E-18 141.7 20.6 213 476-698 83-318 (474)
68 2ond_A Cleavage stimulation fa 99.5 4.8E-12 1.6E-16 123.9 28.0 218 478-700 33-269 (308)
69 3ulq_A Response regulator aspa 99.5 9.9E-13 3.4E-17 133.7 23.4 231 467-700 109-367 (383)
70 3ro2_A PINS homolog, G-protein 99.5 2.7E-13 9.2E-18 135.4 18.1 276 361-670 10-334 (338)
71 4i17_A Hypothetical protein; T 99.5 2E-12 6.8E-17 120.6 21.0 151 460-614 6-165 (228)
72 3ulq_A Response regulator aspa 99.5 2.2E-12 7.6E-17 131.1 23.0 231 432-665 109-367 (383)
73 4abn_A Tetratricopeptide repea 99.5 8.7E-13 3E-17 137.3 20.0 213 442-662 84-317 (474)
74 4i17_A Hypothetical protein; T 99.5 5.9E-12 2E-16 117.4 23.6 205 530-744 6-221 (228)
75 3nf1_A KLC 1, kinesin light ch 99.5 1.5E-12 5.1E-17 128.3 18.1 237 462-700 28-306 (311)
76 3nf1_A KLC 1, kinesin light ch 99.5 2E-12 6.8E-17 127.4 18.2 238 495-734 26-309 (311)
77 4gyw_A UDP-N-acetylglucosamine 99.4 2.5E-12 8.4E-17 138.9 20.1 162 532-700 10-173 (723)
78 3q15_A PSP28, response regulat 99.4 1.7E-11 5.8E-16 124.2 24.6 231 467-700 107-364 (378)
79 3as5_A MAMA; tetratricopeptide 99.4 9.5E-12 3.3E-16 111.7 18.3 161 534-700 11-172 (186)
80 4gyw_A UDP-N-acetylglucosamine 99.4 4.4E-12 1.5E-16 137.0 18.4 165 495-665 8-173 (723)
81 3as5_A MAMA; tetratricopeptide 99.4 1.4E-11 4.7E-16 110.7 18.6 170 496-672 8-177 (186)
82 1hz4_A MALT regulatory protein 99.4 1.2E-10 4E-15 118.0 26.4 295 435-735 23-352 (373)
83 3q15_A PSP28, response regulat 99.4 7E-11 2.4E-15 119.7 23.9 310 1-313 3-363 (378)
84 1qqe_A Vesicular transport pro 99.4 1.9E-11 6.5E-16 118.5 17.6 198 505-706 46-272 (292)
85 1hz4_A MALT regulatory protein 99.3 5.3E-10 1.8E-14 113.1 28.2 265 401-665 24-321 (373)
86 3urz_A Uncharacterized protein 99.3 5.3E-11 1.8E-15 108.7 17.5 133 537-676 60-194 (208)
87 3urz_A Uncharacterized protein 99.3 4.1E-11 1.4E-15 109.3 15.4 129 571-706 59-189 (208)
88 3edt_B KLC 2, kinesin light ch 99.3 3.4E-11 1.2E-15 116.6 15.4 205 496-700 43-280 (283)
89 3edt_B KLC 2, kinesin light ch 99.3 5E-11 1.7E-15 115.4 16.1 223 508-732 13-281 (283)
90 3mv2_B Coatomer subunit epsilo 99.3 7.1E-10 2.4E-14 104.2 23.0 79 480-559 85-164 (310)
91 4ga2_A E3 SUMO-protein ligase 99.3 1.1E-11 3.6E-16 106.2 9.8 144 537-687 3-149 (150)
92 3qky_A Outer membrane assembly 99.3 3.1E-10 1.1E-14 108.1 20.0 170 496-672 15-228 (261)
93 3qky_A Outer membrane assembly 99.3 2.5E-10 8.7E-15 108.7 19.2 167 529-700 13-223 (261)
94 1qqe_A Vesicular transport pro 99.2 2.1E-10 7.2E-15 111.1 18.0 215 441-676 32-277 (292)
95 3mv2_B Coatomer subunit epsilo 99.2 3E-09 1E-13 100.0 23.2 145 515-664 85-238 (310)
96 2yhc_A BAMD, UPF0169 lipoprote 99.2 1.2E-09 4.1E-14 101.1 20.0 184 496-702 4-214 (225)
97 2fo7_A Synthetic consensus TPR 99.2 9E-10 3.1E-14 92.5 16.8 125 571-700 6-131 (136)
98 2pzi_A Probable serine/threoni 99.2 4.5E-10 1.6E-14 122.4 18.3 173 507-687 402-583 (681)
99 3rjv_A Putative SEL1 repeat pr 99.2 2.7E-09 9.3E-14 97.4 20.5 174 514-702 4-198 (212)
100 2pzi_A Probable serine/threoni 99.2 5.8E-10 2E-14 121.5 18.3 247 472-739 402-665 (681)
101 2uy1_A Cleavage stimulation fa 99.2 5.3E-08 1.8E-12 100.9 31.8 123 568-699 288-411 (493)
102 2fo7_A Synthetic consensus TPR 99.2 1.6E-09 5.3E-14 91.1 16.9 133 533-671 3-135 (136)
103 2yhc_A BAMD, UPF0169 lipoprote 99.2 2.9E-09 1E-13 98.5 20.1 187 460-671 3-216 (225)
104 3rjv_A Putative SEL1 repeat pr 99.1 3E-09 1E-13 97.2 19.5 175 479-667 4-198 (212)
105 4ga2_A E3 SUMO-protein ligase 99.1 1.8E-10 6E-15 98.6 10.3 145 10-160 3-148 (150)
106 2r5s_A Uncharacterized protein 99.1 4E-10 1.4E-14 99.7 12.9 156 536-698 11-170 (176)
107 3qou_A Protein YBBN; thioredox 99.1 9.1E-10 3.1E-14 106.1 16.0 160 497-663 118-281 (287)
108 4gco_A Protein STI-1; structur 99.1 7.7E-10 2.6E-14 91.0 12.9 109 566-679 13-121 (126)
109 3dra_A Protein farnesyltransfe 99.1 3.5E-08 1.2E-12 94.0 26.0 223 477-706 49-291 (306)
110 2uy1_A Cleavage stimulation fa 99.1 2E-07 6.7E-12 96.6 33.2 125 532-665 287-412 (493)
111 3qou_A Protein YBBN; thioredox 99.1 2.9E-09 9.8E-14 102.6 17.6 166 529-700 115-283 (287)
112 2r5s_A Uncharacterized protein 99.1 1.7E-09 5.8E-14 95.6 14.4 160 499-665 9-172 (176)
113 3gyz_A Chaperone protein IPGC; 99.1 1.9E-09 6.4E-14 91.4 13.7 104 565-673 35-138 (151)
114 2vsy_A XCC0866; transferase, g 99.1 1.7E-09 5.9E-14 116.0 17.0 158 509-673 2-162 (568)
115 3dra_A Protein farnesyltransfe 99.1 7.9E-08 2.7E-12 91.6 26.5 217 57-279 50-286 (306)
116 2vsy_A XCC0866; transferase, g 99.0 2.9E-09 9.8E-14 114.3 17.0 153 544-702 2-158 (568)
117 1hh8_A P67PHOX, NCF-2, neutrop 99.0 1E-08 3.4E-13 94.1 17.6 131 534-672 9-154 (213)
118 3gyz_A Chaperone protein IPGC; 99.0 1.6E-09 5.3E-14 91.9 11.0 121 569-701 12-133 (151)
119 2ifu_A Gamma-SNAP; membrane fu 99.0 2.6E-09 9.1E-14 104.2 13.5 97 568-665 78-183 (307)
120 2ifu_A Gamma-SNAP; membrane fu 99.0 5.7E-09 2E-13 101.8 15.6 185 505-694 45-254 (307)
121 2vgx_A Chaperone SYCD; alterna 99.0 2.3E-09 8E-14 91.1 10.0 104 565-673 20-123 (148)
122 3dss_A Geranylgeranyl transfer 99.0 1.4E-07 4.8E-12 90.3 22.9 184 547-738 90-310 (331)
123 3u3w_A Transcriptional activat 98.9 1.3E-07 4.3E-12 91.6 22.6 164 537-700 81-265 (293)
124 4f3v_A ESX-1 secretion system 98.9 5.3E-09 1.8E-13 96.9 11.9 186 508-700 18-236 (282)
125 1a17_A Serine/threonine protei 98.9 2.8E-08 9.5E-13 86.9 15.6 130 566-700 13-145 (166)
126 2qfc_A PLCR protein; TPR, HTH, 98.9 1.4E-07 4.9E-12 91.2 22.0 166 533-700 77-265 (293)
127 2e2e_A Formate-dependent nitri 98.9 7.5E-09 2.6E-13 91.6 11.8 126 543-674 22-150 (177)
128 3upv_A Heat shock protein STI1 98.9 2.4E-08 8.3E-13 82.4 14.1 111 565-680 3-119 (126)
129 3dss_A Geranylgeranyl transfer 98.9 4.2E-07 1.4E-11 87.1 24.3 185 512-706 90-307 (331)
130 2vgx_A Chaperone SYCD; alterna 98.9 3.6E-09 1.2E-13 90.0 8.8 109 587-700 8-117 (148)
131 4gco_A Protein STI-1; structur 98.9 3.5E-08 1.2E-12 81.1 14.2 109 532-645 14-123 (126)
132 2qfc_A PLCR protein; TPR, HTH, 98.9 2E-07 6.7E-12 90.2 22.0 168 498-665 77-265 (293)
133 2c2l_A CHIP, carboxy terminus 98.9 1E-08 3.5E-13 98.3 12.4 194 495-700 3-198 (281)
134 4gcn_A Protein STI-1; structur 98.9 2.5E-08 8.5E-13 82.2 12.6 106 567-676 9-120 (127)
135 3q7a_A Farnesyltransferase alp 98.9 1.2E-06 4E-11 84.3 25.5 175 14-195 64-256 (349)
136 1hh8_A P67PHOX, NCF-2, neutrop 98.9 8.7E-08 3E-12 87.8 17.4 130 499-637 9-154 (213)
137 4f3v_A ESX-1 secretion system 98.9 5.9E-08 2E-12 90.0 15.6 194 473-676 18-244 (282)
138 2xcb_A PCRH, regulatory protei 98.9 1.6E-08 5.4E-13 85.6 11.0 106 565-675 17-122 (142)
139 1a17_A Serine/threonine protei 98.9 8E-08 2.7E-12 83.9 15.9 130 532-665 14-145 (166)
140 3u3w_A Transcriptional activat 98.8 8.2E-07 2.8E-11 85.8 23.8 98 568-665 157-265 (293)
141 2lni_A Stress-induced-phosphop 98.8 5.6E-08 1.9E-12 81.1 13.6 106 563-673 13-118 (133)
142 2c2l_A CHIP, carboxy terminus 98.8 9.8E-09 3.4E-13 98.4 9.7 190 530-732 3-199 (281)
143 3q7a_A Farnesyltransferase alp 98.8 1.7E-06 6E-11 83.1 25.0 184 42-231 56-257 (349)
144 2e2e_A Formate-dependent nitri 98.8 2.3E-08 7.9E-13 88.5 11.2 124 576-706 20-147 (177)
145 2vyi_A SGTA protein; chaperone 98.8 6.8E-08 2.3E-12 80.2 13.3 118 565-687 11-129 (131)
146 4gcn_A Protein STI-1; structur 98.8 2E-08 6.7E-13 82.8 9.4 105 601-708 7-119 (127)
147 1elw_A TPR1-domain of HOP; HOP 98.8 1.5E-07 5.2E-12 76.3 14.9 106 566-676 4-109 (118)
148 1p5q_A FKBP52, FK506-binding p 98.8 7.5E-08 2.5E-12 94.9 15.0 131 565-700 146-293 (336)
149 3gw4_A Uncharacterized protein 98.8 4.8E-08 1.6E-12 88.7 12.8 157 543-700 4-175 (203)
150 2fbn_A 70 kDa peptidylprolyl i 98.8 8.2E-09 2.8E-13 93.3 7.3 130 566-700 38-185 (198)
151 1na0_A Designed protein CTPR3; 98.8 1.3E-07 4.6E-12 77.6 14.2 104 566-674 9-112 (125)
152 3sz7_A HSC70 cochaperone (SGT) 98.8 5.4E-08 1.9E-12 84.7 12.3 106 564-674 9-114 (164)
153 1hxi_A PEX5, peroxisome target 98.8 5E-08 1.7E-12 79.5 11.0 97 569-671 20-117 (121)
154 2vyi_A SGTA protein; chaperone 98.8 1.4E-07 4.9E-12 78.2 14.2 120 530-653 11-130 (131)
155 2lni_A Stress-induced-phosphop 98.8 1.4E-07 4.9E-12 78.5 14.1 118 530-652 15-133 (133)
156 1na0_A Designed protein CTPR3; 98.7 3.3E-07 1.1E-11 75.2 15.2 116 531-650 9-124 (125)
157 3gw4_A Uncharacterized protein 98.7 2.1E-07 7.3E-12 84.3 15.3 157 508-665 4-175 (203)
158 2xcb_A PCRH, regulatory protei 98.7 5.7E-08 1.9E-12 82.1 10.3 108 588-700 6-114 (142)
159 3q49_B STIP1 homology and U bo 98.7 1.5E-07 5E-12 79.0 12.6 99 564-665 7-105 (137)
160 1p5q_A FKBP52, FK506-binding p 98.7 2E-07 7E-12 91.8 15.5 97 566-665 196-293 (336)
161 1elr_A TPR2A-domain of HOP; HO 98.7 1.4E-07 4.6E-12 78.4 11.1 110 566-679 4-119 (131)
162 2dba_A Smooth muscle cell asso 98.7 5.2E-07 1.8E-11 76.8 14.8 113 564-681 26-141 (148)
163 2kck_A TPR repeat; tetratricop 98.6 2.2E-07 7.6E-12 74.5 11.0 98 600-700 4-105 (112)
164 2kck_A TPR repeat; tetratricop 98.6 3.4E-07 1.2E-11 73.4 12.1 103 564-671 4-109 (112)
165 2xev_A YBGF; tetratricopeptide 98.6 5.2E-07 1.8E-11 74.6 13.3 103 570-677 6-114 (129)
166 3upv_A Heat shock protein STI1 98.6 6.3E-07 2.2E-11 73.7 13.5 98 531-631 4-101 (126)
167 1elw_A TPR1-domain of HOP; HOP 98.6 9.5E-07 3.3E-11 71.5 14.5 110 531-645 4-114 (118)
168 2fbn_A 70 kDa peptidylprolyl i 98.6 7.3E-08 2.5E-12 87.0 8.0 155 6-166 6-176 (198)
169 1hxi_A PEX5, peroxisome target 98.5 7.1E-07 2.4E-11 72.5 11.4 100 532-636 18-117 (121)
170 3sz7_A HSC70 cochaperone (SGT) 98.5 1.1E-06 3.8E-11 76.3 13.3 99 530-631 10-108 (164)
171 3k9i_A BH0479 protein; putativ 98.5 1.6E-07 5.5E-12 76.1 7.3 95 578-675 2-97 (117)
172 3q49_B STIP1 homology and U bo 98.5 1E-06 3.4E-11 73.8 12.5 100 529-631 7-106 (137)
173 2hr2_A Hypothetical protein; a 98.5 3.4E-07 1.2E-11 76.2 9.1 95 569-665 14-130 (159)
174 3rkv_A Putative peptidylprolyl 98.5 7.4E-07 2.5E-11 77.2 11.5 108 569-679 14-138 (162)
175 4b4t_Q 26S proteasome regulato 98.5 7.6E-06 2.6E-10 84.4 20.1 198 433-630 11-244 (434)
176 1wao_1 Serine/threonine protei 98.5 3.7E-07 1.3E-11 94.5 9.9 121 571-696 11-134 (477)
177 2if4_A ATFKBP42; FKBP-like, al 98.5 3.7E-07 1.3E-11 90.0 9.5 94 604-700 232-327 (338)
178 1kt0_A FKBP51, 51 kDa FK506-bi 98.5 1.4E-06 4.9E-11 89.7 14.3 129 566-699 268-413 (457)
179 1elr_A TPR2A-domain of HOP; HO 98.5 1.1E-06 3.9E-11 72.7 11.2 111 532-647 5-122 (131)
180 1ihg_A Cyclophilin 40; ppiase 98.5 1E-06 3.5E-11 87.7 12.6 119 569-693 226-362 (370)
181 2dba_A Smooth muscle cell asso 98.5 3.7E-06 1.3E-10 71.3 14.6 111 530-646 27-142 (148)
182 2hr2_A Hypothetical protein; a 98.5 1.2E-06 4E-11 73.0 10.6 94 603-700 12-130 (159)
183 2xev_A YBGF; tetratricopeptide 98.4 5.2E-06 1.8E-10 68.5 14.7 95 534-631 5-105 (129)
184 1zu2_A Mitochondrial import re 98.4 4.1E-07 1.4E-11 75.5 7.2 96 578-679 14-131 (158)
185 1wao_1 Serine/threonine protei 98.4 1.4E-07 4.7E-12 97.8 5.0 121 537-661 12-134 (477)
186 4b4t_Q 26S proteasome regulato 98.4 1.3E-05 4.4E-10 82.6 19.5 167 534-700 58-244 (434)
187 3k9i_A BH0479 protein; putativ 98.4 5.7E-07 1.9E-11 72.8 7.2 87 543-631 2-90 (117)
188 3ro3_A PINS homolog, G-protein 98.4 1.9E-06 6.6E-11 74.5 10.9 134 567-700 10-157 (164)
189 3ro3_A PINS homolog, G-protein 98.4 2.1E-06 7.3E-11 74.2 11.1 133 533-665 11-157 (164)
190 2if4_A ATFKBP42; FKBP-like, al 98.3 1.1E-06 3.8E-11 86.5 9.4 154 495-673 178-333 (338)
191 1dce_A Protein (RAB geranylger 98.3 2.2E-05 7.5E-10 82.7 19.3 173 511-690 44-244 (567)
192 1kt0_A FKBP51, 51 kDa FK506-bi 98.3 5.4E-06 1.9E-10 85.4 14.4 96 566-665 317-414 (457)
193 1dce_A Protein (RAB geranylger 98.3 1.4E-05 4.9E-10 84.1 17.2 114 548-665 46-172 (567)
194 1ihg_A Cyclophilin 40; ppiase 98.3 5.3E-06 1.8E-10 82.5 13.2 91 565-658 272-362 (370)
195 3rkv_A Putative peptidylprolyl 98.3 8.9E-06 3E-10 70.3 12.6 99 40-141 11-127 (162)
196 2kat_A Uncharacterized protein 98.2 6.4E-06 2.2E-10 66.2 10.3 83 583-670 2-84 (115)
197 2l6j_A TPR repeat-containing p 98.1 2.9E-06 9.9E-11 67.7 5.7 61 567-629 5-65 (111)
198 3n71_A Histone lysine methyltr 98.1 2.1E-05 7.3E-10 80.5 13.4 126 575-700 318-463 (490)
199 2l6j_A TPR repeat-containing p 98.1 2.1E-06 7.2E-11 68.5 4.8 94 601-697 3-103 (111)
200 1zu2_A Mitochondrial import re 98.0 1.6E-05 5.4E-10 66.0 8.5 95 543-642 14-129 (158)
201 1klx_A Cysteine rich protein B 98.0 0.00011 3.8E-09 60.9 13.9 108 546-665 10-125 (138)
202 1klx_A Cysteine rich protein B 98.0 0.00013 4.4E-09 60.6 14.2 112 580-703 9-128 (138)
203 1na3_A Designed protein CTPR2; 98.0 4.4E-05 1.5E-09 57.9 10.6 62 603-665 10-71 (91)
204 3n71_A Histone lysine methyltr 98.0 2.7E-05 9.3E-10 79.8 11.7 125 541-665 319-463 (490)
205 3ma5_A Tetratricopeptide repea 98.0 2.8E-05 9.5E-10 60.4 8.2 67 598-665 3-69 (100)
206 3ly7_A Transcriptional activat 97.9 0.00023 7.9E-09 68.2 15.0 75 598-676 273-347 (372)
207 1na3_A Designed protein CTPR2; 97.9 0.00013 4.5E-09 55.2 11.0 82 40-124 9-90 (91)
208 2kat_A Uncharacterized protein 97.8 9.8E-05 3.3E-09 59.1 9.6 78 22-103 3-80 (115)
209 3ma5_A Tetratricopeptide repea 97.7 0.00014 4.8E-09 56.3 9.0 67 563-631 4-70 (100)
210 3ly7_A Transcriptional activat 97.7 0.00031 1.1E-08 67.4 12.3 119 582-706 215-342 (372)
211 2kc7_A BFR218_protein; tetratr 97.6 6.2E-05 2.1E-09 58.3 5.5 63 608-673 6-69 (99)
212 2kc7_A BFR218_protein; tetratr 97.6 6.6E-05 2.2E-09 58.1 5.2 82 572-665 6-89 (99)
213 3bee_A Putative YFRE protein; 97.5 0.0006 2.1E-08 51.4 9.6 65 599-665 3-71 (93)
214 3qwp_A SET and MYND domain-con 97.5 0.00064 2.2E-08 68.6 12.5 108 573-680 294-417 (429)
215 1pc2_A Mitochondria fission pr 97.5 0.00093 3.2E-08 54.7 10.2 92 582-678 14-110 (152)
216 3qww_A SET and MYND domain-con 97.5 0.00026 9E-09 71.2 8.5 87 579-665 311-410 (433)
217 1pc2_A Mitochondria fission pr 97.4 0.0011 3.9E-08 54.2 9.5 85 618-707 14-104 (152)
218 3bee_A Putative YFRE protein; 97.3 0.0019 6.5E-08 48.6 9.6 67 563-631 3-72 (93)
219 3qww_A SET and MYND domain-con 97.2 0.00086 2.9E-08 67.5 8.8 87 544-630 311-410 (433)
220 2v5f_A Prolyl 4-hydroxylase su 97.1 0.003 1E-07 49.0 9.4 71 603-675 6-82 (104)
221 3qwp_A SET and MYND domain-con 97.1 0.0017 5.8E-08 65.5 9.3 91 540-630 296-399 (429)
222 3u64_A Protein TP_0956; tetrat 96.9 0.033 1.1E-06 51.1 15.2 83 618-704 179-272 (301)
223 2v5f_A Prolyl 4-hydroxylase su 96.7 0.012 4.1E-07 45.5 9.9 68 39-106 4-76 (104)
224 1nzn_A CGI-135 protein, fissio 96.7 0.014 5E-07 45.8 9.6 92 582-678 17-113 (126)
225 3lvg_A Clathrin heavy chain 1; 96.6 6E-05 2.1E-09 73.3 -4.7 182 77-278 55-256 (624)
226 3u64_A Protein TP_0956; tetrat 96.5 0.027 9.1E-07 51.7 11.5 81 582-666 179-269 (301)
227 4h7y_A Dual specificity protei 96.5 0.08 2.7E-06 42.6 12.6 49 616-665 74-122 (161)
228 4h7y_A Dual specificity protei 96.5 0.018 6.2E-07 46.2 9.0 105 599-706 10-128 (161)
229 3mkq_A Coatomer beta'-subunit; 96.3 0.2 6.8E-06 56.0 20.3 75 430-522 633-707 (814)
230 3mkq_A Coatomer beta'-subunit; 96.2 0.19 6.7E-06 56.1 19.7 45 542-592 663-707 (814)
231 1nzn_A CGI-135 protein, fissio 96.2 0.041 1.4E-06 43.2 9.4 86 617-706 16-106 (126)
232 3mkq_B Coatomer subunit alpha; 96.1 0.27 9.1E-06 41.4 14.6 100 51-172 16-115 (177)
233 3lvg_A Clathrin heavy chain 1; 96.0 2.1E-05 7.4E-10 76.4 -11.6 224 180-439 53-276 (624)
234 3mkq_B Coatomer subunit alpha; 95.9 0.56 1.9E-05 39.5 15.7 44 543-592 17-60 (177)
235 4ady_A RPN2, 26S proteasome re 95.8 3 0.0001 45.7 45.5 263 365-640 383-664 (963)
236 1wy6_A Hypothetical protein ST 95.6 0.61 2.1E-05 36.7 14.5 65 498-563 93-157 (172)
237 1y8m_A FIS1; mitochondria, unk 95.4 0.33 1.1E-05 38.8 12.0 78 599-678 36-116 (144)
238 4ady_A RPN2, 26S proteasome re 95.4 4.1 0.00014 44.6 42.8 153 401-559 500-657 (963)
239 1qsa_A Protein (soluble lytic 95.1 2.3 7.9E-05 44.7 20.8 314 366-700 16-347 (618)
240 3o48_A Mitochondria fission 1 95.0 0.25 8.7E-06 38.9 10.0 75 600-678 38-117 (134)
241 3ffl_A Anaphase-promoting comp 94.9 0.22 7.5E-06 41.1 9.8 55 12-66 28-89 (167)
242 3txn_A 26S proteasome regulato 94.4 2.7 9.1E-05 41.1 18.1 131 462-593 20-166 (394)
243 4gns_B Protein CSD3, chitin bi 94.1 0.38 1.3E-05 51.5 12.3 53 609-663 344-397 (754)
244 4b4t_P 26S proteasome regulato 94.0 5.1 0.00017 40.3 20.0 164 535-698 141-321 (445)
245 4b4t_P 26S proteasome regulato 94.0 5.8 0.0002 39.9 20.4 99 567-665 138-246 (445)
246 1y8m_A FIS1; mitochondria, unk 93.9 1.6 5.3E-05 35.0 12.3 70 634-707 36-110 (144)
247 1wy6_A Hypothetical protein ST 93.8 1.9 6.6E-05 33.9 15.4 137 16-176 19-155 (172)
248 3ffl_A Anaphase-promoting comp 93.6 0.28 9.7E-06 40.5 7.9 125 569-706 23-156 (167)
249 3o48_A Mitochondria fission 1 93.5 0.76 2.6E-05 36.3 9.8 70 634-707 37-111 (134)
250 2ff4_A Probable regulatory pro 93.3 1.6 5.3E-05 43.2 14.6 74 604-678 173-251 (388)
251 2ff4_A Probable regulatory pro 93.2 0.98 3.3E-05 44.7 12.9 71 78-149 173-248 (388)
252 1zbp_A Hypothetical protein VP 93.1 0.95 3.2E-05 40.9 11.2 58 575-636 6-63 (273)
253 3lpz_A GET4 (YOR164C homolog); 92.2 7.9 0.00027 36.6 18.7 167 463-664 37-214 (336)
254 4gns_B Protein CSD3, chitin bi 91.5 0.97 3.3E-05 48.4 10.9 50 542-592 348-397 (754)
255 1v54_E Cytochrome C oxidase po 90.2 1.5 5.3E-05 32.3 7.5 62 546-609 25-86 (109)
256 4fhn_B Nucleoporin NUP120; pro 89.8 5.9 0.0002 45.8 16.3 210 501-732 817-1050(1139)
257 4fhn_B Nucleoporin NUP120; pro 89.6 6.9 0.00024 45.2 16.7 51 46-102 818-868 (1139)
258 2wpv_A GET4, UPF0363 protein Y 89.4 14 0.00048 34.6 18.3 112 464-590 36-158 (312)
259 1zbp_A Hypothetical protein VP 88.9 2.5 8.5E-05 38.3 9.6 55 540-595 6-60 (273)
260 4b4t_R RPN7, 26S proteasome re 87.2 6.7 0.00023 39.3 12.9 120 546-665 109-236 (429)
261 3esl_A Checkpoint serine/threo 85.9 3.3 0.00011 35.5 8.2 57 615-671 92-149 (202)
262 2y69_E Cytochrome C oxidase su 84.4 5.7 0.00019 31.2 7.9 60 548-609 70-129 (152)
263 2wpv_A GET4, UPF0363 protein Y 84.3 27 0.00094 32.7 20.2 25 601-625 133-157 (312)
264 1v54_E Cytochrome C oxidase po 83.9 5.1 0.00017 29.6 7.1 63 617-680 25-87 (109)
265 1qsa_A Protein (soluble lytic 83.2 49 0.0017 34.8 35.6 116 475-594 228-347 (618)
266 4b4t_R RPN7, 26S proteasome re 80.1 16 0.00056 36.5 12.2 98 533-630 133-236 (429)
267 2wvi_A Mitotic checkpoint seri 78.0 4 0.00014 33.8 5.6 53 620-672 78-131 (164)
268 4a1g_A Mitotic checkpoint seri 76.1 25 0.00085 28.6 9.7 51 621-671 84-135 (152)
269 3esl_A Checkpoint serine/threo 75.3 23 0.00078 30.4 9.7 55 581-635 94-148 (202)
270 2y69_E Cytochrome C oxidase su 74.9 15 0.00052 28.9 7.6 60 620-680 71-130 (152)
271 4a1g_A Mitotic checkpoint seri 66.5 47 0.0016 27.0 9.3 53 583-635 82-134 (152)
272 3txn_A 26S proteasome regulato 66.4 1E+02 0.0034 30.1 26.2 222 466-703 104-345 (394)
273 4aez_C MAD3, mitotic spindle c 64.1 6.2 0.00021 34.5 4.0 53 619-671 131-184 (223)
274 2uwj_G Type III export protein 64.1 39 0.0013 24.9 7.3 77 231-315 21-97 (115)
275 2p58_C Putative type III secre 63.8 42 0.0014 24.8 7.7 49 260-314 49-97 (116)
276 2wvi_A Mitotic checkpoint seri 62.7 54 0.0019 27.1 9.1 54 583-636 77-130 (164)
277 1ya0_A SMG-7 transcript varian 59.7 55 0.0019 33.2 10.6 78 533-613 154-231 (497)
278 3mv2_A Coatomer subunit alpha; 56.6 89 0.003 29.2 10.4 66 620-700 188-255 (325)
279 1bpo_A Protein (clathrin); cla 56.4 1.5E+02 0.0052 29.4 12.3 51 14-68 339-389 (494)
280 2uwj_G Type III export protein 53.1 66 0.0023 23.8 9.0 79 125-211 20-98 (115)
281 2p58_C Putative type III secre 51.5 71 0.0024 23.6 9.7 78 125-210 21-98 (116)
282 3bu8_A Telomeric repeat-bindin 51.0 47 0.0016 28.6 6.9 52 20-71 88-145 (235)
283 1o9d_A 14-3-3-like protein C; 49.7 1.5E+02 0.0051 26.8 13.3 48 653-700 151-206 (260)
284 4aez_C MAD3, mitotic spindle c 48.8 76 0.0026 27.8 8.2 53 583-635 131-183 (223)
285 3eiq_C Programmed cell death p 48.1 1.1E+02 0.0037 29.4 10.0 63 360-423 221-285 (358)
286 1wdy_A 2-5A-dependent ribonucl 44.0 1.8E+02 0.0062 26.2 13.2 22 298-319 191-212 (285)
287 2l2e_A Calcium-binding protein 43.9 1.4E+02 0.0049 24.9 10.1 101 3-103 6-109 (190)
288 1s6c_A KV4 potassium channel-i 42.3 1.5E+02 0.005 24.6 11.9 99 5-103 1-102 (183)
289 1wdy_A 2-5A-dependent ribonucl 42.0 1.9E+02 0.0067 26.0 11.4 13 157-169 13-25 (285)
290 4b4t_S RPN3, 26S proteasome re 41.8 2.9E+02 0.01 28.0 14.2 66 566-631 231-299 (523)
291 3lpz_A GET4 (YOR164C homolog); 41.7 2.3E+02 0.0079 26.7 26.5 111 359-484 38-159 (336)
292 3kea_A K1L; tropism, ANK repea 40.3 1.7E+02 0.0059 26.7 10.3 18 363-380 165-182 (285)
293 1ya0_A SMG-7 transcript varian 39.6 1.9E+02 0.0067 29.2 10.9 78 79-158 155-232 (497)
294 3kae_A CDC27, possible protein 39.2 1.6E+02 0.0056 24.3 10.4 98 540-665 42-142 (242)
295 4gq2_M Nucleoporin NUP120; bet 39.1 2.3E+02 0.0078 31.8 12.5 52 537-593 816-867 (950)
296 1g8i_A Frequenin, neuronal cal 39.0 1.7E+02 0.0058 24.4 9.8 103 1-103 1-109 (190)
297 4b4t_S RPN3, 26S proteasome re 38.4 3.3E+02 0.011 27.6 12.9 66 75-140 230-299 (523)
298 2r9g_A AAA ATPase, central reg 38.1 1.9E+02 0.0065 24.7 9.9 37 508-545 26-62 (204)
299 2d2s_A Exocyst complex compone 37.3 1.3E+02 0.0044 26.8 8.2 91 45-138 23-118 (235)
300 1bpo_A Protein (clathrin); cla 37.1 2.9E+02 0.0098 27.5 10.9 112 53-170 342-453 (494)
301 4gq2_M Nucleoporin NUP120; bet 35.6 3.5E+02 0.012 30.2 13.3 109 46-160 816-950 (950)
302 1fpw_A Yeast frequenin, calciu 34.1 2E+02 0.007 23.9 12.4 50 1-50 1-55 (190)
303 2d2s_A Exocyst complex compone 32.9 2.2E+02 0.0075 25.3 8.9 21 293-313 25-45 (235)
304 3eu9_A Huntingtin-interacting 31.3 2.6E+02 0.0088 24.2 10.0 6 227-232 50-55 (240)
305 2b7e_A PRE-mRNA processing pro 31.2 41 0.0014 22.0 2.8 33 197-229 2-35 (59)
306 2ijq_A Hypothetical protein; s 30.9 1.8E+02 0.006 24.0 7.2 54 612-665 42-103 (161)
307 2r9g_A AAA ATPase, central reg 30.8 2.5E+02 0.0087 24.0 9.7 29 404-433 27-55 (204)
308 2qx5_A Nucleoporin NIC96; mRNA 30.4 5.1E+02 0.017 27.4 19.1 43 255-298 156-198 (661)
309 3hra_A Ankyrin repeat family p 30.3 2.2E+02 0.0074 23.9 8.7 12 332-343 80-91 (201)
310 3kea_A K1L; tropism, ANK repea 30.1 2.6E+02 0.0088 25.5 9.7 20 327-346 164-183 (285)
311 3bu8_A Telomeric repeat-bindin 29.4 1.8E+02 0.0063 25.1 7.1 22 644-665 121-142 (235)
312 2p1h_A APAF-1, apoptotic prote 29.1 1.6E+02 0.0056 21.3 6.6 26 5-30 37-62 (94)
313 4ets_A Ferric uptake regulatio 28.9 92 0.0032 25.7 5.5 70 20-91 13-84 (162)
314 3bge_A Predicted ATPase; struc 28.4 2.8E+02 0.0095 23.7 9.8 35 509-543 20-54 (201)
315 3ygs_P Procaspase 9; apoptosis 28.3 1.3E+02 0.0045 22.1 5.7 50 5-59 36-87 (97)
316 3eu9_A Huntingtin-interacting 28.1 2.1E+02 0.0072 24.8 8.5 15 156-170 49-63 (240)
317 3jxi_A Vanilloid receptor-rela 27.7 1.2E+02 0.0041 27.2 6.8 19 228-246 14-32 (260)
318 2jul_A Calsenilin; EF-hand, ca 27.6 3.2E+02 0.011 24.4 9.6 167 4-172 73-255 (256)
319 3pvs_A Replication-associated 27.4 4.7E+02 0.016 26.0 12.9 38 508-545 267-304 (447)
320 3ltm_A Alpha-REP4; protein eng 27.3 2.9E+02 0.0099 23.5 21.4 59 180-243 125-183 (211)
321 3hra_A Ankyrin repeat family p 27.0 2.8E+02 0.0095 23.2 10.7 15 157-171 13-27 (201)
322 2w57_A Ferric uptake regulatio 26.8 1.4E+02 0.0047 24.2 6.1 57 694-750 4-66 (150)
323 3ctd_A Putative ATPase, AAA fa 26.2 3.2E+02 0.011 23.6 9.9 56 509-564 48-108 (213)
324 3jxi_A Vanilloid receptor-rela 26.0 89 0.003 28.1 5.5 20 192-211 13-32 (260)
325 1mzb_A Ferric uptake regulatio 25.1 1.6E+02 0.0053 23.3 6.1 55 696-750 7-67 (136)
326 3eyy_A Putative iron uptake re 24.4 1.1E+02 0.0036 24.7 5.0 57 693-750 5-66 (145)
327 3bqo_A Telomeric repeat-bindin 24.2 1E+02 0.0035 26.2 4.7 23 48-70 125-147 (211)
328 3ctd_A Putative ATPase, AAA fa 23.8 3.5E+02 0.012 23.3 9.0 33 404-436 48-80 (213)
329 2nsz_A Programmed cell death p 23.1 2.7E+02 0.0093 21.7 7.7 65 183-248 9-75 (129)
330 2ion_A PDCD4, programmed cell 22.6 2.1E+02 0.0072 23.2 6.4 65 183-248 11-77 (152)
331 2ion_A PDCD4, programmed cell 22.6 2.5E+02 0.0085 22.8 6.8 63 79-142 12-76 (152)
332 2fu4_A Ferric uptake regulatio 22.6 2E+02 0.0068 20.0 6.6 55 696-750 6-66 (83)
333 2fe3_A Peroxide operon regulat 22.0 3E+02 0.01 21.9 7.4 40 31-71 13-52 (145)
334 4b4t_O 26S proteasome regulato 21.8 5.5E+02 0.019 24.9 10.8 58 537-594 82-155 (393)
335 1k1a_A B-cell lymphoma 3-encod 21.7 3.9E+02 0.013 23.1 10.4 22 225-246 15-36 (241)
336 1k1a_A B-cell lymphoma 3-encod 21.7 3.9E+02 0.013 23.1 11.5 21 191-211 16-36 (241)
337 3ltm_A Alpha-REP4; protein eng 21.0 3.8E+02 0.013 22.7 20.8 141 110-266 32-172 (211)
338 2xig_A Ferric uptake regulatio 21.0 3.3E+02 0.011 21.9 7.9 60 207-267 18-77 (150)
339 2nsz_A Programmed cell death p 20.4 3.1E+02 0.011 21.4 8.2 63 79-142 10-74 (129)
340 2bwb_A Ubiquitin-like protein 20.3 1.1E+02 0.0038 18.7 3.2 27 1-27 17-43 (46)
341 2fe3_A Peroxide operon regulat 20.3 3.3E+02 0.011 21.7 8.1 59 207-266 13-71 (145)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2e-39 Score=354.11 Aligned_cols=524 Identities=10% Similarity=-0.055 Sum_probs=376.2
Q ss_pred HHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhH
Q 004352 86 YGRRGKVQEAVDVFERMDFYNCEPTVLSYNTIMNILVEYGYFSQVHKVYMRMRNKGIVPDVYTFVIRIKSFCRTRRPHVA 165 (759)
Q Consensus 86 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 165 (759)
+.+.|.+..+...+..+. .+++..|+.++..|.+.|++++|..+|+++... .|+..++..++.+|.+.|++++|
T Consensus 63 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A 136 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDS----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARA 136 (597)
T ss_dssp -----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccccCccCCCCCccccch----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHH
Confidence 345566666666666554 467888999999999999999999999999864 47888888999999999999999
Q ss_pred HHHHhhchhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 004352 166 LRLLKNMPSQGFEPNAVAYCTLIAGFYEENHNVEAYELFDEMLGMGISPDIATFNKLIHTLCKKGNVRESEKLFNKVLKR 245 (759)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 245 (759)
..+|+.+... +++..+++.++..|.+.|++++|+++|+++.. +.. ....+.+.++ ...
T Consensus 137 ~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~----~~~~~~~~~~-----------~~~ 194 (597)
T 2xpi_A 137 KCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNP-----FRK----DEKNANKLLM-----------QDG 194 (597)
T ss_dssp HHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCT-----TC--------------C-----------CCS
T ss_pred HHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCC-----ccc----cccccccccc-----------ccc
Confidence 9999988654 57888999999999999999999999985321 110 0001111111 112
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhCCChHHHH--HH-HHHHHHCCCCCChh
Q 004352 246 GVSPNLFTFNMFIQGLCRKGAISEAISLLDSLGREDLTPDVVTYNTLMCGLCKNSKVVEAE--YY-LHKMVNEGLEPDGF 322 (759)
Q Consensus 246 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~--~~-~~~~~~~~~~~~~~ 322 (759)
+.+++..+|+.++.+|.+.|++++|.+.|+++.+.+ +.+...+..+...+...+..+.+. .+ +..+...+..+...
T Consensus 195 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 273 (597)
T 2xpi_A 195 GIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRS 273 (597)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHH
Confidence 344456666777777777777777777777766543 223334444443333222221111 11 34444443344445
Q ss_pred cHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 004352 323 SYNAVIDGYCKAGMISSADKILNDAIFKGFVPDEFTYCSLINGLCQDGDVDRAMAVYVKALEKGLKPSIVLYNTLIKGLS 402 (759)
Q Consensus 323 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 402 (759)
+|..++..|.+.|++++|.++|+.+... +++..+++.++..|.+.|++++|..+|+++.+.++. +..+++.++.++.
T Consensus 274 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~ 350 (597)
T 2xpi_A 274 LYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLH 350 (597)
T ss_dssp HHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHH
T ss_pred HHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHH
Confidence 5666677777888888888888877665 467778888888888888888888888888877654 6777888888888
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 004352 403 QQGLILQALQLMNEMSESGCCPDMWTYNIVINGLCKMGCVSDANNLVNDAISKGYIPDIFTFNTLIDGYCKQLKMEIAIE 482 (759)
Q Consensus 403 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 482 (759)
+.|++++|..+++++.... +.+..++..++..|.+.|++++|..+|+++.+.. +.+..+|+.++..|.+.|++++|.+
T Consensus 351 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 428 (597)
T 2xpi_A 351 ESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAIS 428 (597)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888888887653 3467778888888888888888888888887653 4467788888888888888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHC--
Q 004352 483 ILNTMWSHGVTPDVITYNSLLNGLCKAAKSEDVMETFKTMIEKRCVPNIITYSILGESLCKAHKITEAFNLLEEMENK-- 560 (759)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-- 560 (759)
+|+++.+.+ +.+..+|..++.+|.+.|++++|.++|+++.+.. +.+..++..++..|.+.|++++|..+|+++.+.
T Consensus 429 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 506 (597)
T 2xpi_A 429 AYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVK 506 (597)
T ss_dssp HHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhh
Confidence 888888764 3467788888888888889999999888888764 346778888888888999999999998888765
Q ss_pred --CCCcc--HHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 004352 561 --GLTLD--TVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPD 636 (759)
Q Consensus 561 --~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 636 (759)
+..|+ ..+|..++.+|.+.|++++|.+.|+++.+. .|++..+|..++.+|...|++++|.+.|+++.+.. +.+
T Consensus 507 ~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-p~~ 583 (597)
T 2xpi_A 507 KTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL--STNDANVHTAIALVYLHKKIPGLAITHLHESLAIS-PNE 583 (597)
T ss_dssp HSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred ccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCC
Confidence 45666 778899999999999999999999999888 68888999999999999999999999999998763 334
Q ss_pred HhhHHHHHHHHH
Q 004352 637 NYTYRIMIDSFC 648 (759)
Q Consensus 637 ~~~~~~l~~~~~ 648 (759)
...+..+..+|.
T Consensus 584 ~~~~~~l~~~~~ 595 (597)
T 2xpi_A 584 IMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHHTTC
T ss_pred hHHHHHHHHHHh
Confidence 777777776553
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.9e-39 Score=354.23 Aligned_cols=487 Identities=11% Similarity=0.005 Sum_probs=371.6
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 004352 181 AVAYCTLIAGFYEENHNVEAYELFDEMLGMGISPDIATFNKLIHTLCKKGNVRESEKLFNKVLKRGVSPNLFTFNMFIQG 260 (759)
Q Consensus 181 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 260 (759)
...|+.++..+.+.|++++|+.+|+++... .|+..++..++.+|.+.|++++|..+|+.+... +++..+++.++.+
T Consensus 84 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 159 (597)
T 2xpi_A 84 EDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFC 159 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHH
Confidence 444444444444444444444444444432 234344444444444444444444444444322 3344444444444
Q ss_pred HHhcCCHHHHHHHHHHHh---------------hCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhcHH
Q 004352 261 LCRKGAISEAISLLDSLG---------------REDLTPDVVTYNTLMCGLCKNSKVVEAEYYLHKMVNEGLEPDGFSYN 325 (759)
Q Consensus 261 ~~~~g~~~~a~~~~~~~~---------------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 325 (759)
|.+.|++++|.++|+++. ..+.+++..+|+.++.+|.+.|++++|...|+++.+.+.. +...+.
T Consensus 160 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ 238 (597)
T 2xpi_A 160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFD 238 (597)
T ss_dssp HHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred HHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHH
Confidence 444444444444444221 1233457889999999999999999999999999986422 444555
Q ss_pred HHHHHHHHcCChhH--HHHH-HHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 004352 326 AVIDGYCKAGMISS--ADKI-LNDAIFKGFVPDEFTYCSLINGLCQDGDVDRAMAVYVKALEKGLKPSIVLYNTLIKGLS 402 (759)
Q Consensus 326 ~ll~~~~~~~~~~~--a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 402 (759)
.+...+...+..+. +..+ +..+...+..+...+++.++..|.+.|++++|..+|+++.+. +++..+|+.++..|.
T Consensus 239 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~ 316 (597)
T 2xpi_A 239 QLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLF 316 (597)
T ss_dssp HHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHH
T ss_pred HHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHH
Confidence 55544433322222 1111 444554444445556777788999999999999999998876 469999999999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 004352 403 QQGLILQALQLMNEMSESGCCPDMWTYNIVINGLCKMGCVSDANNLVNDAISKGYIPDIFTFNTLIDGYCKQLKMEIAIE 482 (759)
Q Consensus 403 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 482 (759)
+.|++++|..+|+++.+.+. .+..++..++.++...|++++|..+++.+.... +.+..+++.++..|.+.|++++|.+
T Consensus 317 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 394 (597)
T 2xpi_A 317 VRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARR 394 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHH
Confidence 99999999999999998753 377789999999999999999999999998654 5578899999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004352 483 ILNTMWSHGVTPDVITYNSLLNGLCKAAKSEDVMETFKTMIEKRCVPNIITYSILGESLCKAHKITEAFNLLEEMENKGL 562 (759)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 562 (759)
+|+++.+.. +.+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.+|...|++++|..+|+++.+. .
T Consensus 395 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~ 471 (597)
T 2xpi_A 395 YFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL-F 471 (597)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-C
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-C
Confidence 999998753 3468899999999999999999999999999874 457889999999999999999999999999986 4
Q ss_pred CccHHHHHHHHHHHHccCChhhHHHHHHHHHHc----cCCCCc-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 004352 563 TLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQ----YKISHT-TATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDN 637 (759)
Q Consensus 563 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 637 (759)
+.+..+|..++.+|.+.|++++|+++|+++.+. ...|.+ ..+|..++.+|...|++++|++.++++.+.+ +.+.
T Consensus 472 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~ 550 (597)
T 2xpi_A 472 QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDA 550 (597)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCH
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCh
Confidence 568899999999999999999999999999876 224443 7899999999999999999999999999774 4469
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004352 638 YTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSLSTIGRVINCL 682 (759)
Q Consensus 638 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 682 (759)
.+|..++.+|...|++++|..+++++++ +.|++......+..+
T Consensus 551 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~l~~~ 593 (597)
T 2xpi_A 551 NVHTAIALVYLHKKIPGLAITHLHESLA--ISPNEIMASDLLKRA 593 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCChHHHHHHHHH
Confidence 9999999999999999999999999999 889877666555544
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=1.6e-27 Score=244.40 Aligned_cols=364 Identities=15% Similarity=0.044 Sum_probs=212.2
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHH
Q 004352 295 GLCKNSKVVEAEYYLHKMVNEGLEPDGFSYNAVIDGYCKAGMISSADKILNDAIFKGFVPDEFTYCSLINGLCQDGDVDR 374 (759)
Q Consensus 295 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 374 (759)
.+.+.|++++|...+..+.... +.+...+..+...+...|+++.|...++.+.... +.+...+..+...+.+.|++++
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 3444555555555555554431 1123334444445555555555555555555432 2244455555566666666666
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004352 375 AMAVYVKALEKGLKPSIVLYNTLIKGLSQQGLILQALQLMNEMSESGCCPDMWTYNIVINGLCKMGCVSDANNLVNDAIS 454 (759)
Q Consensus 375 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 454 (759)
|...|+++....+. +...|..+..++...|++++|...|+++.+.. +.+...+..+...+...|++++|...|+++..
T Consensus 86 A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 86 AIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 66666665554332 44455556666666666666666666555542 11233444555555556666666666666555
Q ss_pred CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcH
Q 004352 455 KGYIPDIFTFNTLIDGYCKQLKMEIAIEILNTMWSHGVTPDVITYNSLLNGLCKAAKSEDVMETFKTMIEKRCVPNIITY 534 (759)
Q Consensus 455 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 534 (759)
.. +.+..++..+...+...|++++|...|+++.+.+ +.+...+..+..++...|++++|+..|++..... +.+..++
T Consensus 164 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 240 (388)
T 1w3b_A 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVH 240 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHH
Confidence 42 2345556666666666666666666666666543 2245556666666666666666666666666542 2245566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHh
Q 004352 535 SILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSE 614 (759)
Q Consensus 535 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 614 (759)
..++.++...|++++|...++++.+. .+.+..++..++.++.+.|++++|+..|+++.+. .|++..++..++.++..
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIEL-QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT-CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHH
Confidence 66666666666666666666666664 2334556666666666667777777777766666 56666666666777777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 004352 615 KLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPS 671 (759)
Q Consensus 615 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 671 (759)
.|++++|+..++++.+.. +.+..++..++.++...|++++|+..++++++ +.|+
T Consensus 318 ~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~ 371 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPT 371 (388)
T ss_dssp TTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTT
T ss_pred cCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCC
Confidence 777777777777666431 22356666666666777777777777777666 5565
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=1.8e-27 Score=243.98 Aligned_cols=378 Identities=14% Similarity=0.074 Sum_probs=232.2
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHHcCChhHH
Q 004352 261 LCRKGAISEAISLLDSLGREDLTPDVVTYNTLMCGLCKNSKVVEAEYYLHKMVNEGLEPDGFSYNAVIDGYCKAGMISSA 340 (759)
Q Consensus 261 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 340 (759)
+.+.|++++|.+.++.+.+.. +.+...+..+...+...|++++|...++...... +.+..+|..+...+.+.|++++|
T Consensus 9 ~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A 86 (388)
T 1w3b_A 9 EYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHH
Confidence 334444455544444443331 2222333333444444555555555554444431 22344455555555555555555
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004352 341 DKILNDAIFKGFVPDEFTYCSLINGLCQDGDVDRAMAVYVKALEKGLKPSIVLYNTLIKGLSQQGLILQALQLMNEMSES 420 (759)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 420 (759)
...|+++.... +.+...+..++.++.+.|++++|...|.++.+..+. +...+..+...+...|++++|...|+++...
T Consensus 87 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 164 (388)
T 1w3b_A 87 IEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIET 164 (388)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 55555554432 112334555555555555555555555555554333 3444555555555556666666666555554
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004352 421 GCCPDMWTYNIVINGLCKMGCVSDANNLVNDAISKGYIPDIFTFNTLIDGYCKQLKMEIAIEILNTMWSHGVTPDVITYN 500 (759)
Q Consensus 421 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 500 (759)
. +.+..++..+...+...|++++|...|+++.... +.+...+..+...+...|++++|...+++..... +.+..++.
T Consensus 165 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 241 (388)
T 1w3b_A 165 Q-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHG 241 (388)
T ss_dssp C-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHH
Confidence 2 2234555556666666666666666666665543 3345566666677777777777777777766643 22466677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccC
Q 004352 501 SLLNGLCKAAKSEDVMETFKTMIEKRCVPNIITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSG 580 (759)
Q Consensus 501 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 580 (759)
.+..++...|++++|++.|+++.+.+ +.+..++..++.++...|++++|...++++.+. .+.+..++..++.++...|
T Consensus 242 ~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g 319 (388)
T 1w3b_A 242 NLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQG 319 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHcC
Confidence 77777777777777777777777653 234566777777777888888888888887775 4567777888888888888
Q ss_pred ChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcC
Q 004352 581 DLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPD-NYTYRIMIDSFCKTG 651 (759)
Q Consensus 581 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 651 (759)
++++|+..|+++.+. .|++..++..++.+|...|++++|+..|+++.+. .|+ ...|..++.++...|
T Consensus 320 ~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 320 NIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp CHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHhHHHHHHHcc
Confidence 888888888888776 6777888888888888888888888888888754 454 677777777766655
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=6.5e-27 Score=242.12 Aligned_cols=185 Identities=14% Similarity=0.216 Sum_probs=130.3
Q ss_pred HHHHHHHHHccCChhhHHHHHhhchhCCCCCCHHhHHHHHHHHHhcC---------ChhHHHHHHHHHHhCCCCCChhhH
Q 004352 149 FVIRIKSFCRTRRPHVALRLLKNMPSQGFEPNAVAYCTLIAGFYEEN---------HNVEAYELFDEMLGMGISPDIATF 219 (759)
Q Consensus 149 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---------~~~~a~~~~~~~~~~~~~~~~~~~ 219 (759)
++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|.+.+ +.+.|.++|++|...|+.||..||
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 34444444444444444444444444444444444444444444333 346677777777777777788888
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhC
Q 004352 220 NKLIHTLCKKGNVRESEKLFNKVLKRGVSPNLFTFNMFIQGLCRKGAISEAISLLDSLGREDLTPDVVTYNTLMCGLCKN 299 (759)
Q Consensus 220 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 299 (759)
+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~ 188 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT 188 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence 88888888888888888888888777777788888888888888888888888888887777777888888888888888
Q ss_pred CChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHH
Q 004352 300 SKVVEAEYYLHKMVNEGLEPDGFSYNAVIDGYCK 333 (759)
Q Consensus 300 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 333 (759)
|++++|.++|++|.+.+..|+..||+.++..|..
T Consensus 189 g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 189 KNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 8888888888888777777788888777777665
No 6
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.2e-24 Score=232.57 Aligned_cols=457 Identities=11% Similarity=0.002 Sum_probs=242.7
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 004352 181 AVAYCTLIAGFYEENHNVEAYELFDEMLGMGISPDIATFNKLIHTLCKKGNVRESEKLFNKVLKRGVSPNLFTFNMFIQG 260 (759)
Q Consensus 181 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 260 (759)
...+......+.+.|++++|+..|+++.+.+ |+...+..+..++.+.|++++|...++++++.+ +.+...+..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 3455556666666677777777777766653 466666666666666677777777666666553 2245566666666
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHHcCChhHH
Q 004352 261 LCRKGAISEAISLLDSLGREDLTPDVVTYNTLMCGLCKNSKVVEAEYYLHKMVNEGLEPDGFSYNAVIDGYCKAGMISSA 340 (759)
Q Consensus 261 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 340 (759)
+...|++++|...|+.+...+ +++......++..+........+.+.+..+...+..|+...+..-........
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----- 156 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQE----- 156 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC--------------------------------
T ss_pred HHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhcc-----
Confidence 666666666666666666554 23333333333333332222222222222222211111111110000000000
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh---cCCHHHHHHHHHHH
Q 004352 341 DKILNDAIFKGFVPDEFTYCSLINGLCQDGDVDRAMAVYVKALEKGLKPSIVLYNTLIKGLSQ---QGLILQALQLMNEM 417 (759)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~ 417 (759)
..|+.... ..+........... ....+.+...+......+.. .|++++|...++++
T Consensus 157 -----------~~~~~~~~----~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 215 (514)
T 2gw1_A 157 -----------NLPSVTSM----ASFFGIFKPELTFA------NYDESNEADKELMNGLSNLYKRSPESYDKADESFTKA 215 (514)
T ss_dssp -----------CCCCHHHH----HHHHTTSCCCCCCS------SCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHH
T ss_pred -----------CCchhHHH----HHHHhhcCHHHHHH------HhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHH
Confidence 01111000 00000000000000 00001123333333333333 56677777777666
Q ss_pred Hh-----CCCCC--------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 004352 418 SE-----SGCCP--------DMWTYNIVINGLCKMGCVSDANNLVNDAISKGYIPDIFTFNTLIDGYCKQLKMEIAIEIL 484 (759)
Q Consensus 418 ~~-----~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 484 (759)
.. ....| +..++..+...+...|++++|...++.+..... +...+..+...|...|++++|...+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~ 293 (514)
T 2gw1_A 216 ARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP--RVNSYIYMALIMADRNDSTEYYNYF 293 (514)
T ss_dssp HHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHTSSCCTTGGGHH
T ss_pred HHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCc--cHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 65 21111 233455556666666667777666666665532 2556666666666677777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 004352 485 NTMWSHGVTPDVITYNSLLNGLCKAAKSEDVMETFKTMIEKRCVPNIITYSILGESLCKAHKITEAFNLLEEMENKGLTL 564 (759)
Q Consensus 485 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 564 (759)
+++.... +.+...+..+..++...|++++|+..|+++.+.. +.+...+..++..+...|++++|...++++.+. .+.
T Consensus 294 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~ 370 (514)
T 2gw1_A 294 DKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK-FPE 370 (514)
T ss_dssp HHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH-STT
T ss_pred HHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-ccc
Confidence 6666543 2245566666666667777777777777666653 224556666666666677777777777766654 233
Q ss_pred cHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCch------hhHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCC
Q 004352 565 DTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTT------ATYNIMINAFSE---KLNFYMAEKLFYEMSEKGCPP 635 (759)
Q Consensus 565 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p 635 (759)
+...+..++.+|...|++++|...|+++... .|.+. ..+..++.++.. .|++++|+..++++.+.. +.
T Consensus 371 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~ 447 (514)
T 2gw1_A 371 APEVPNFFAEILTDKNDFDKALKQYDLAIEL--ENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PR 447 (514)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TT
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--hhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cc
Confidence 4556666666777777777777777766655 33332 266667777777 677777777777766542 23
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 004352 636 DNYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSLSTIGR 677 (759)
Q Consensus 636 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ 677 (759)
+..++..++.++...|++++|..+++++++ +.|+......
T Consensus 448 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~ 487 (514)
T 2gw1_A 448 SEQAKIGLAQMKLQQEDIDEAITLFEESAD--LARTMEEKLQ 487 (514)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hccccHHHHH
Confidence 366666677777777777777777777776 6666554433
No 7
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=1.2e-26 Score=240.03 Aligned_cols=184 Identities=12% Similarity=0.215 Sum_probs=94.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC---------hhhHHHHHhhchhCCCCCCHHhH
Q 004352 114 YNTIMNILVEYGYFSQVHKVYMRMRNKGIVPDVYTFVIRIKSFCRTRR---------PHVALRLLKNMPSQGFEPNAVAY 184 (759)
Q Consensus 114 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~A~~~~~~~~~~~~~~~~~~~ 184 (759)
++.+|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.+. .+.|.++|++|...|+.||..+|
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 444444444555555555555555444444555555555544443332 33455555555555555555555
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 004352 185 CTLIAGFYEENHNVEAYELFDEMLGMGISPDIATFNKLIHTLCKKGNVRESEKLFNKVLKRGVSPNLFTFNMFIQGLCRK 264 (759)
Q Consensus 185 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 264 (759)
+++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|.+.|+.||..+|++|+.+|++.
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~ 188 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT 188 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHH
Q 004352 265 GAISEAISLLDSLGREDLTPDVVTYNTLMCGLC 297 (759)
Q Consensus 265 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 297 (759)
|++++|.+++++|.+.+..|+..||+.++..+.
T Consensus 189 g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 189 KNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp TCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence 555555555555555555555555555554444
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=6.2e-24 Score=227.11 Aligned_cols=459 Identities=10% Similarity=-0.031 Sum_probs=332.4
Q ss_pred HHHHHHHHHHHHccCChhhHHHHHhhchhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 004352 146 VYTFVIRIKSFCRTRRPHVALRLLKNMPSQGFEPNAVAYCTLIAGFYEENHNVEAYELFDEMLGMGISPDIATFNKLIHT 225 (759)
Q Consensus 146 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 225 (759)
...+......+.+.|++++|...|+++...+ |+..+|..++..+...|++++|+..|+++.+.+ +.+..++..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 5667888899999999999999999999986 789999999999999999999999999999875 3366788999999
Q ss_pred HHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhCCChHHH
Q 004352 226 LCKKGNVRESEKLFNKVLKRGVSPNLFTFNMFIQGLCRKGAISEAISLLDSLGREDLTPDVVTYNTLMCGLCKNSKVVEA 305 (759)
Q Consensus 226 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 305 (759)
+...|++++|...|+.+...+. ++......++..+........+.+.+..+...+..|+...+......
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---------- 151 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKER---------- 151 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC--------------------------------
T ss_pred HHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHH----------
Confidence 9999999999999999998854 34444455555554444444444444444333222222221111000
Q ss_pred HHHHHHHHHCCCCCChhcHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHh---cCCHHHHHHHHHHH
Q 004352 306 EYYLHKMVNEGLEPDGFSYNAVIDGYCKAGMISSADKILNDAIFKGFVPDEFTYCSLINGLCQ---DGDVDRAMAVYVKA 382 (759)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~ 382 (759)
.......|+...... +.......... .....+.+...+......+.. .|++++|..+|+++
T Consensus 152 ------~~~~~~~~~~~~~~~----~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 215 (514)
T 2gw1_A 152 ------KDKQENLPSVTSMAS----FFGIFKPELTF------ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKA 215 (514)
T ss_dssp -----------CCCCHHHHHH----HHTTSCCCCCC------SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHH
T ss_pred ------HhhccCCchhHHHHH----HHhhcCHHHHH------HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHH
Confidence 000111222222111 11111100000 000001123344444444444 78889999988888
Q ss_pred HH-----c--CC------CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 004352 383 LE-----K--GL------KPSIVLYNTLIKGLSQQGLILQALQLMNEMSESGCCPDMWTYNIVINGLCKMGCVSDANNLV 449 (759)
Q Consensus 383 ~~-----~--~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 449 (759)
.. . .+ +.+...+..+...+...|++++|...++++.... |+...+..+...+...|++++|...+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~ 293 (514)
T 2gw1_A 216 ARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYF 293 (514)
T ss_dssp HHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHH
T ss_pred HHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 77 3 11 1235577788888999999999999999988864 33778888889999999999999999
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 004352 450 NDAISKGYIPDIFTFNTLIDGYCKQLKMEIAIEILNTMWSHGVTPDVITYNSLLNGLCKAAKSEDVMETFKTMIEKRCVP 529 (759)
Q Consensus 450 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 529 (759)
+.+.... +.+..++..+...|...|++++|...++++.+... .+...+..+..++...|++++|+..++++.+.. +.
T Consensus 294 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~ 370 (514)
T 2gw1_A 294 DKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PE 370 (514)
T ss_dssp HHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TT
T ss_pred HHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-cc
Confidence 9988764 44677888899999999999999999999988743 356788889999999999999999999998863 34
Q ss_pred ChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-Ccc----HHHHHHHHHHHHc---cCChhhHHHHHHHHHHccCCCCc
Q 004352 530 NIITYSILGESLCKAHKITEAFNLLEEMENKGL-TLD----TVAFGTLINGFCN---SGDLDGAYQLFRRMEDQYKISHT 601 (759)
Q Consensus 530 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~ 601 (759)
+...+..++..+...|++++|...++++.+... .++ ...+..++.++.. .|++++|...|+++... .|.+
T Consensus 371 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~ 448 (514)
T 2gw1_A 371 APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL--DPRS 448 (514)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH--CTTC
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh--Cccc
Confidence 677888999999999999999999999887421 111 3378889999999 99999999999999988 7888
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HhhHHHH
Q 004352 602 TATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPD-NYTYRIM 643 (759)
Q Consensus 602 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l 643 (759)
..++..++.+|...|++++|...|+++.+. .|+ ...+..+
T Consensus 449 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~ 489 (514)
T 2gw1_A 449 EQAKIGLAQMKLQQEDIDEAITLFEESADL--ARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--ccccHHHHHHH
Confidence 999999999999999999999999999976 466 4444443
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=1.2e-22 Score=212.86 Aligned_cols=325 Identities=10% Similarity=0.008 Sum_probs=209.2
Q ss_pred hhcHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 004352 321 GFSYNAVIDGYCKAGMISSADKILNDAIFKGFVPDEFTYCSLINGLCQDGDVDRAMAVYVKALEKGLKPSIVLYNTLIKG 400 (759)
Q Consensus 321 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 400 (759)
...+..+...+.+.|++++|...|+.+.... +.+...+..++.++...|++++|...|+++.+.++. +...+..+...
T Consensus 26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 103 (450)
T 2y4t_A 26 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHH
Confidence 3344445555555555555555555554432 223444455555555555555555555555544333 34445555555
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 004352 401 LSQQGLILQALQLMNEMSESGCCPDM----WTYNIVINGLCKMGCVSDANNLVNDAISKGYIPDIFTFNTLIDGYCKQLK 476 (759)
Q Consensus 401 ~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 476 (759)
|...|++++|...|+++.... |+. ..+..+...+.. ..+..+...+...|+
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~~~ 158 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEM-----------------------QRLRSQALNAFGSGD 158 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTC
T ss_pred HHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHcCC
Confidence 555555555555555554432 221 222222222100 011222444667788
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHH
Q 004352 477 MEIAIEILNTMWSHGVTPDVITYNSLLNGLCKAAKSEDVMETFKTMIEKRCVPNIITYSILGESLCKAHKITEAFNLLEE 556 (759)
Q Consensus 477 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 556 (759)
+++|...|+++.+.. +.+...+..++.+|...|++++|+..|+++.+.. +.+..++..++.++...|++++|...+++
T Consensus 159 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 236 (450)
T 2y4t_A 159 YTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRE 236 (450)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 888888888777653 3366777777778888888888888888777653 34567777778888888888888888888
Q ss_pred HHHCCCCccHHHHHHH------------HHHHHccCChhhHHHHHHHHHHccCCCCc----hhhHHHHHHHHHhcCCHHH
Q 004352 557 MENKGLTLDTVAFGTL------------INGFCNSGDLDGAYQLFRRMEDQYKISHT----TATYNIMINAFSEKLNFYM 620 (759)
Q Consensus 557 ~~~~~~~~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~ 620 (759)
+... .+.+...+..+ +.+|...|++++|+..|+++... .|.+ ..++..++.++...|++++
T Consensus 237 ~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~ 313 (450)
T 2y4t_A 237 CLKL-DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVE 313 (450)
T ss_dssp HHHH-CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHh-CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHH
Confidence 7765 23344444443 78888899999999999999887 5655 3477888899999999999
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004352 621 AEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSLSTIGRVIN 680 (759)
Q Consensus 621 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 680 (759)
|+..++++.+.. +.+..+|..++.+|...|++++|+..++++++ +.|++......+.
T Consensus 314 A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 314 AIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQIREGLE 370 (450)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHH
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence 999999988653 34588899999999999999999999999998 7887655544443
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.93 E-value=1.8e-23 Score=224.73 Aligned_cols=445 Identities=12% Similarity=0.048 Sum_probs=233.7
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 004352 181 AVAYCTLIAGFYEENHNVEAYELFDEMLGMGISPDIATFNKLIHTLCKKGNVRESEKLFNKVLKRGVSPNLFTFNMFIQG 260 (759)
Q Consensus 181 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 260 (759)
...|..+...+.+.|++++|++.|+++.+.. +.+..++..+..++.+.|++++|.+.++++++.+ +.+...+..+...
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 4556666677777777777777777776653 2255666667777777777777777777776653 2255666666677
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCC--CCCChhcHHHHHHHHHHcCChh
Q 004352 261 LCRKGAISEAISLLDSLGREDLTPDVVTYNTLMCGLCKNSKVVEAEYYLHKMVNEG--LEPDGFSYNAVIDGYCKAGMIS 338 (759)
Q Consensus 261 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~ 338 (759)
+...|++++|...|+.+. . .|+. ....+..+...+...+|...++.+.... ..+........+..+....+.+
T Consensus 103 ~~~~g~~~~A~~~~~~~~-~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVLS-L--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHcCCHHHHHHHHHHHh-c--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 777777777777775332 1 1111 1111223333333445555555553320 0000011112222233333333
Q ss_pred HHHHHHHHHHhCCCCCCcc---cHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 004352 339 SADKILNDAIFKGFVPDEF---TYCSLINGLCQDGDVDRAMAVYVKALEKGLKPSIVLYNTLIKGLSQQGLILQALQLMN 415 (759)
Q Consensus 339 ~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 415 (759)
.+...+.... ..+.. ....+...+...+ .......+++++|..+++
T Consensus 178 ~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~---------------------------~~~~~a~~~~~~A~~~~~ 226 (537)
T 3fp2_A 178 LEVSSVNTSS----NYDTAYALLSDALQRLYSATD---------------------------EGYLVANDLLTKSTDMYH 226 (537)
T ss_dssp HHHHTSCCCC----SSCSSHHHHHHHHHHHHTCSH---------------------------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcc----ccccHHHHHHHHHHHHHHhhh---------------------------hhhHHHHHHHHHHHHHHH
Confidence 3222211111 00100 1111111111000 000011234566666666
Q ss_pred HHHhCCCCCCH-------HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004352 416 EMSESGCCPDM-------WTYNIVINGLCKMGCVSDANNLVNDAISKGYIPDIFTFNTLIDGYCKQLKMEIAIEILNTMW 488 (759)
Q Consensus 416 ~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 488 (759)
++.+.... +. .++..+...+...|++++|...++.+... .|+...+..+...|...|++++|...++++.
T Consensus 227 ~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 303 (537)
T 3fp2_A 227 SLLSANTV-DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAV 303 (537)
T ss_dssp HHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHH
T ss_pred HHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHh
Confidence 66554211 11 13444445555666666666666666654 2335556666666666666666666666666
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHH
Q 004352 489 SHGVTPDVITYNSLLNGLCKAAKSEDVMETFKTMIEKRCVPNIITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVA 568 (759)
Q Consensus 489 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 568 (759)
+.. +.+..++..+..++...|++++|+..|+++.+.. +.+...+..++.++...|++++|...++++.+. .+.+...
T Consensus 304 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~ 380 (537)
T 3fp2_A 304 DLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK-FPTLPEV 380 (537)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCTHH
T ss_pred ccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCChHH
Confidence 543 2245566666666666677777777766666653 224456666666666677777777777666665 2445556
Q ss_pred HHHHHHHHHccCChhhHHHHHHHHHHccCCCCch------hhHHHHHHHHHhc----------CCHHHHHHHHHHHHHcC
Q 004352 569 FGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTT------ATYNIMINAFSEK----------LNFYMAEKLFYEMSEKG 632 (759)
Q Consensus 569 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~ 632 (759)
+..++.++...|++++|+..|+++... .|.+. ..+..++.++... |++++|+..++++.+..
T Consensus 381 ~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 458 (537)
T 3fp2_A 381 PTFFAEILTDRGDFDTAIKQYDIAKRL--EEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD 458 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHc--CCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC
Confidence 666666677777777777777766554 22221 1233445556666 77777777777766542
Q ss_pred CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH
Q 004352 633 CPPDNYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSLST 674 (759)
Q Consensus 633 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 674 (759)
+.+..++..++.+|...|++++|+..|+++++ +.|+...
T Consensus 459 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~~~~~~ 497 (537)
T 3fp2_A 459 -PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI--LARTMDE 497 (537)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HC--CHH
T ss_pred -CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCcHH
Confidence 33366666677777777777777777777776 5555433
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=2.1e-22 Score=211.00 Aligned_cols=366 Identities=12% Similarity=0.023 Sum_probs=257.1
Q ss_pred HHHHHHHHHhhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHHcCChhHHHHHHHHHH
Q 004352 269 EAISLLDSLGREDLTPDVVTYNTLMCGLCKNSKVVEAEYYLHKMVNEGLEPDGFSYNAVIDGYCKAGMISSADKILNDAI 348 (759)
Q Consensus 269 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 348 (759)
.+...+..+.... +.+...+..+...+.+.|++++|...|+++.... +.+..++..+...+...|++++|...++.+.
T Consensus 10 ~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 87 (450)
T 2y4t_A 10 GVDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVI 87 (450)
T ss_dssp --------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3444455554333 5567788999999999999999999999999863 4467889999999999999999999999999
Q ss_pred hCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 004352 349 FKGFVPDEFTYCSLINGLCQDGDVDRAMAVYVKALEKGLKPSI---VLYNTLIKGLSQQGLILQALQLMNEMSESGCCPD 425 (759)
Q Consensus 349 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 425 (759)
..+ +.+...+..++.+|.+.|++++|...|+++....+. +. ..+..++..+...
T Consensus 88 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~--------------------- 144 (450)
T 2y4t_A 88 QLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQ--------------------- 144 (450)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHH---------------------
T ss_pred hcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHH---------------------
Confidence 875 336778899999999999999999999999987543 44 5666665442111
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004352 426 MWTYNIVINGLCKMGCVSDANNLVNDAISKGYIPDIFTFNTLIDGYCKQLKMEIAIEILNTMWSHGVTPDVITYNSLLNG 505 (759)
Q Consensus 426 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 505 (759)
.+..+...+...|++++|...++.+.... +.+..++..++.+|...|++++|...|+++.+.. +.+..++..++.+
T Consensus 145 --~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 220 (450)
T 2y4t_A 145 --RLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTL 220 (450)
T ss_dssp --HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHH
T ss_pred --HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 12223334555666666666666666543 3355666666666667777777777776666542 2356666666777
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChhcHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCcc----HHHH
Q 004352 506 LCKAAKSEDVMETFKTMIEKRCVPNIITYSIL------------GESLCKAHKITEAFNLLEEMENKGLTLD----TVAF 569 (759)
Q Consensus 506 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~ 569 (759)
|...|++++|+..|+++.... +.+...+..+ +..+...|++++|...++++.+.. +.+ ...+
T Consensus 221 ~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~ 298 (450)
T 2y4t_A 221 YYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSIAEYTVRSK 298 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CSSHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CcchHHHHHHH
Confidence 777777777777777766542 1223333333 778888899999999999888752 222 3467
Q ss_pred HHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HhhHHHHHHH--
Q 004352 570 GTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPD-NYTYRIMIDS-- 646 (759)
Q Consensus 570 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~-- 646 (759)
..++.++.+.|++++|+..++++... .|++..+|..++.+|...|++++|+..++++.+. .|+ ..++..+..+
T Consensus 299 ~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~ 374 (450)
T 2y4t_A 299 ERICHCFSKDEKPVEAIRVCSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH--NENDQQIREGLEKAQR 374 (450)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcchHHHHHHHHHHHH
Confidence 88888899999999999999998887 7888889999999999999999999999999854 565 6677766643
Q ss_pred ----------HHhcC-----ChHHHHHHHHH-HHhCCCCCC
Q 004352 647 ----------FCKTG-----GINSGYCLLLE-NIDKGFIPS 671 (759)
Q Consensus 647 ----------~~~~g-----~~~~A~~~~~~-~~~~g~~p~ 671 (759)
|...| +.+++.+.+++ +++ ..|+
T Consensus 375 ~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~--~~pd 413 (450)
T 2y4t_A 375 LLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQ--WHPD 413 (450)
T ss_dssp HHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHH--SCGG
T ss_pred HhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHH--hCCC
Confidence 33333 55677777776 555 4454
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=5e-22 Score=213.50 Aligned_cols=444 Identities=12% Similarity=0.028 Sum_probs=301.5
Q ss_pred CHHHHHHHHHHHHccCChhhHHHHHhhchhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 004352 145 DVYTFVIRIKSFCRTRRPHVALRLLKNMPSQGFEPNAVAYCTLIAGFYEENHNVEAYELFDEMLGMGISPDIATFNKLIH 224 (759)
Q Consensus 145 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 224 (759)
....+..+...+.+.|++++|...|+++...+ |.+..+|..+...+...|++++|++.|+++.+.+ +.+..++..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 35678888999999999999999999999886 6788999999999999999999999999999875 336778888999
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCCCcchHHHHHHHHHhCCCh
Q 004352 225 TLCKKGNVRESEKLFNKVLKRGVSPNLFTFNMFIQGLCRKGAISEAISLLDSLGRED--LTPDVVTYNTLMCGLCKNSKV 302 (759)
Q Consensus 225 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~ 302 (759)
++...|++++|...|+ .... .|+. ....+..+...+....|...++.+.... ..+........+..+....+.
T Consensus 102 ~~~~~g~~~~A~~~~~-~~~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLS-VLSL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176 (537)
T ss_dssp HHHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCH
T ss_pred HHHHcCCHHHHHHHHH-HHhc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcCh
Confidence 9999999999999997 4333 2222 2223445556667788999999987542 122233344555666667776
Q ss_pred HHHHHHHHHHHHCCCCCChhcHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHH
Q 004352 303 VEAEYYLHKMVNEGLEPDGFSYNAVIDGYCKAGMISSADKILNDAIFKGFVPDEFTYCSLINGLCQDGDVDRAMAVYVKA 382 (759)
Q Consensus 303 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 382 (759)
+.+...+..... .+. .+..+...+... ... + ........|++++|..+++++
T Consensus 177 ~~~~~~~~~~~~----~~~-~~~~~~~~l~~~-------------~~~----~------~~~~~~a~~~~~~A~~~~~~~ 228 (537)
T 3fp2_A 177 HLEVSSVNTSSN----YDT-AYALLSDALQRL-------------YSA----T------DEGYLVANDLLTKSTDMYHSL 228 (537)
T ss_dssp HHHHHTSCCCCS----SCS-SHHHHHHHHHHH-------------HTC----S------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccc----ccc-HHHHHHHHHHHH-------------HHh----h------hhhhHHHHHHHHHHHHHHHHH
Confidence 666544333221 111 122222222111 000 0 000111133455555555555
Q ss_pred HHcCCCCCH-------HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 004352 383 LEKGLKPSI-------VLYNTLIKGLSQQGLILQALQLMNEMSESGCCPDMWTYNIVINGLCKMGCVSDANNLVNDAISK 455 (759)
Q Consensus 383 ~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 455 (759)
.+..+. +. .++..+...+...|++++|...++++... .|+...+..+...+...|++++|...++.+...
T Consensus 229 l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 305 (537)
T 3fp2_A 229 LSANTV-DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDL 305 (537)
T ss_dssp HC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHH
T ss_pred HHHCCC-cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhcc
Confidence 554332 21 23444555666677777777777777765 344666667777777777777777777777765
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHH
Q 004352 456 GYIPDIFTFNTLIDGYCKQLKMEIAIEILNTMWSHGVTPDVITYNSLLNGLCKAAKSEDVMETFKTMIEKRCVPNIITYS 535 (759)
Q Consensus 456 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 535 (759)
. +.+..++..+...|...|++++|...++++.+... .+...+..+..++...|++++|+..++++.+.. +.+...+.
T Consensus 306 ~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~ 382 (537)
T 3fp2_A 306 N-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPT 382 (537)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHH
T ss_pred C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHH
Confidence 3 34567777777888888888888888888776532 245677778888888888888888888887763 33566777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC-----CCccHHHHHHHHHHHHcc----------CChhhHHHHHHHHHHccCCCC
Q 004352 536 ILGESLCKAHKITEAFNLLEEMENKG-----LTLDTVAFGTLINGFCNS----------GDLDGAYQLFRRMEDQYKISH 600 (759)
Q Consensus 536 ~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~ 600 (759)
.++..+...|++++|...++++.+.. .......+.....++... |++++|+..|+++... .|.
T Consensus 383 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~ 460 (537)
T 3fp2_A 383 FFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL--DPR 460 (537)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH--CTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh--CCC
Confidence 88888888888888888888877531 111222244555667777 9999999999999888 788
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004352 601 TTATYNIMINAFSEKLNFYMAEKLFYEMSEK 631 (759)
Q Consensus 601 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 631 (759)
+..++..++.+|...|++++|++.|+++.+.
T Consensus 461 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 461 SEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 8889999999999999999999999998865
No 13
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.91 E-value=8e-18 Score=183.72 Aligned_cols=377 Identities=12% Similarity=0.123 Sum_probs=234.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHH
Q 004352 220 NKLIHTLCKKGNVRESEKLFNKVLKRGV--SPNLFTFNMFIQGLCRKGAISEAISLLDSLGREDLTPDVVTYNTLMCGLC 297 (759)
Q Consensus 220 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 297 (759)
...+.+|...|.+.+|.++++++.-.+- ..+....+.++.+..+. +..+..+..+..... ....+...+.
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d~~eIA~Iai 1060 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DAPDIANIAI 1060 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------cHHHHHHHHH
Confidence 4455666677777777777777763311 12334455566555555 445555555554311 1333556666
Q ss_pred hCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHH
Q 004352 298 KNSKVVEAEYYLHKMVNEGLEPDGFSYNAVIDGYCKAGMISSADKILNDAIFKGFVPDEFTYCSLINGLCQDGDVDRAMA 377 (759)
Q Consensus 298 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 377 (759)
..|.+++|..+|++... .....+.+ +...+++++|.++.++. .++.+|..+..++...|++++|+.
T Consensus 1061 ~lglyEEAf~IYkKa~~-----~~~A~~VL---ie~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAId 1126 (1630)
T 1xi4_A 1061 SNELFEEAFAIFRKFDV-----NTSAVQVL---IEHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAID 1126 (1630)
T ss_pred hCCCHHHHHHHHHHcCC-----HHHHHHHH---HHHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 77777777777777421 11112222 22566677777776644 245667777777777777777777
Q ss_pred HHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 004352 378 VYVKALEKGLKPSIVLYNTLIKGLSQQGLILQALQLMNEMSESGCCPDMWTYNIVINGLCKMGCVSDANNLVNDAISKGY 457 (759)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 457 (759)
.|.+. .+...|..++.++.+.|++++|.+.|....+.. +++...+.++.+|++.+++++...+ +.
T Consensus 1127 sYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f----I~--- 1191 (1630)
T 1xi4_A 1127 SYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF----IN--- 1191 (1630)
T ss_pred HHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH----Hh---
Confidence 77553 266667777777777777777777777666543 2322333466677777766643333 21
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHH
Q 004352 458 IPDIFTFNTLIDGYCKQLKMEIAIEILNTMWSHGVTPDVITYNSLLNGLCKAAKSEDVMETFKTMIEKRCVPNIITYSIL 537 (759)
Q Consensus 458 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 537 (759)
.++...+..+...|...|++++|...|..+ ..|..++.++.+.|++++|++.+++. .+..+|..+
T Consensus 1192 ~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev 1256 (1630)
T 1xi4_A 1192 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEV 1256 (1630)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHH
Confidence 334555666777777777777777777764 25677777777777777777777765 245677777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhc--
Q 004352 538 GESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEK-- 615 (759)
Q Consensus 538 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 615 (759)
..+|...|++..|...... +..++..+..++..|.+.|.+++|+.+++..... .+.+...|..++.+|.+.
T Consensus 1257 ~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~L--eraH~gmftELaiLyaKy~p 1329 (1630)
T 1xi4_A 1257 CFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGL--ERAHMGMFTELAILYSKFKP 1329 (1630)
T ss_pred HHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--ChhHhHHHHHHHHHHHhCCH
Confidence 7777777777777765553 2235555667777777777777777777777666 455666666666666643
Q ss_pred CCHHHHHHHHHHHHHcCCCC------CHhhHHHHHHHHHhcCChHHHH
Q 004352 616 LNFYMAEKLFYEMSEKGCPP------DNYTYRIMIDSFCKTGGINSGY 657 (759)
Q Consensus 616 g~~~~A~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~A~ 657 (759)
++..++.++|..-. +++| +...|..++-.|.+.|+++.|.
T Consensus 1330 eklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1330 QKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 45566666655443 3333 3556777777777777777776
No 14
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.90 E-value=9.9e-17 Score=175.27 Aligned_cols=570 Identities=11% Similarity=0.089 Sum_probs=379.1
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCC-CCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHH
Q 004352 37 KHTLLTYKYMIDKLGFHGNFEEMENLLLEMRMDVD-DSLLEGVHIGVMRNYGRRGKVQEAVDVFERMDFYNCEPTVLSYN 115 (759)
Q Consensus 37 ~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 115 (759)
+.++.--...++.|..+|.+.+|+++++++..... .+.....-+.++++..+. +..+..++..+... .+ ..
T Consensus 982 ~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~----~d---~~ 1053 (1630)
T 1xi4_A 982 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN----YD---AP 1053 (1630)
T ss_pred ccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh----cc---HH
Confidence 34455556788889999999999999999985442 222455666677777766 55666666665541 22 33
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHhhchhCCCCCCHHhHHHHHHHHHhcC
Q 004352 116 TIMNILVEYGYFSQVHKVYMRMRNKGIVPDVYTFVIRIKSFCRTRRPHVALRLLKNMPSQGFEPNAVAYCTLIAGFYEEN 195 (759)
Q Consensus 116 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 195 (759)
.+...+...|.+++|..+|++.. -.....+.++. ..+++++|.++.+++ .+..+|..+..++...|
T Consensus 1054 eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G 1119 (1630)
T 1xi4_A 1054 DIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKG 1119 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCC
Confidence 47788889999999999999963 12223333332 668899999998865 24788899999999999
Q ss_pred ChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004352 196 HNVEAYELFDEMLGMGISPDIATFNKLIHTLCKKGNVRESEKLFNKVLKRGVSPNLFTFNMFIQGLCRKGAISEAISLLD 275 (759)
Q Consensus 196 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 275 (759)
++++|++.|.+. -|...|..++..+.+.|++++|.+.+....+.. ++....+.++.+|++.+++++.....
T Consensus 1120 ~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI- 1190 (1630)
T 1xi4_A 1120 MVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI- 1190 (1630)
T ss_pred CHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH-
Confidence 999999999664 367778889999999999999999998887764 33333445888899998888644432
Q ss_pred HHhhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC
Q 004352 276 SLGREDLTPDVVTYNTLMCGLCKNSKVVEAEYYLHKMVNEGLEPDGFSYNAVIDGYCKAGMISSADKILNDAIFKGFVPD 355 (759)
Q Consensus 276 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 355 (759)
. .++...|..+...|...|++++|..+|... ..|..+...+.+.|+++.|.+.+++.. +
T Consensus 1191 --~----~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n 1249 (1630)
T 1xi4_A 1191 --N----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------S 1249 (1630)
T ss_pred --h----CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------C
Confidence 1 456667778888999999999999999885 368889999999999999999998762 6
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004352 356 EFTYCSLINGLCQDGDVDRAMAVYVKALEKGLKPSIVLYNTLIKGLSQQGLILQALQLMNEMSESGCCPDMWTYNIVING 435 (759)
Q Consensus 356 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 435 (759)
..+|..+..+|...|++..|..+...+. .++..+..++..|.+.|.+++|+.+++...... +.....|+-+...
T Consensus 1250 ~~aWkev~~acve~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiL 1323 (1630)
T 1xi4_A 1250 TRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAIL 1323 (1630)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHH
Confidence 6888888899999999999988776432 367777788999999999999999998887653 2233455555555
Q ss_pred HHh--cCChHHHHHHHHHHHHCC----CCCCHhhHHHHHHHHHhcCCHHHHHHH-------------HHHHHHCCCCCCH
Q 004352 436 LCK--MGCVSDANNLVNDAISKG----YIPDIFTFNTLIDGYCKQLKMEIAIEI-------------LNTMWSHGVTPDV 496 (759)
Q Consensus 436 ~~~--~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~-------------~~~~~~~~~~~~~ 496 (759)
+++ -++..++.+.|..-.... ...+...|..++..|.+.|+++.|... |...+.. ..++
T Consensus 1324 yaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~k--v~n~ 1401 (1630)
T 1xi4_A 1324 YSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK--VANV 1401 (1630)
T ss_pred HHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcc--cccH
Confidence 554 334444555554332210 012456788888999999999988732 2222221 3366
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHH
Q 004352 497 ITYNSLLNGLCKAAKSEDVMETFKTMIEKRCVPNIITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGF 576 (759)
Q Consensus 497 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 576 (759)
..|...+..|... ...++.-+...+.. ..-+...+..+.+.++..-+..+++.+...+ +..+-..+.+.|
T Consensus 1402 elyykai~Fyl~~--~P~~lndLl~~l~~-----rlD~~R~V~l~~~~~~l~lik~yl~~vq~~n---~~~Vneal~el~ 1471 (1630)
T 1xi4_A 1402 ELYYRAIQFYLEF--KPLLLNDLLMVLSP-----RLDHTRAVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLF 1471 (1630)
T ss_pred HHHHHHHHHHHhh--ChHHHHHHHHHhhh-----cCChHHHHHHHHHcCChHHhHHHHHHHHHhc---chhhhHHHHHHh
Confidence 6777777766632 22222222222211 1123445556666777777777776665432 222233444444
Q ss_pred HccCChhhH------------HHHHHHHHHccCCCCchhhHHHHH-HHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHH
Q 004352 577 CNSGDLDGA------------YQLFRRMEDQYKISHTTATYNIMI-NAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIM 643 (759)
Q Consensus 577 ~~~g~~~~A------------~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 643 (759)
....+++.- ..+-+++.+. ...-+..++ .+|.++|+|..|++++++.. -|.-.
T Consensus 1472 ieeed~~~Lr~si~~~~nfd~~~La~~lekh-----eLl~frrIAa~ly~~n~~~~~ai~l~k~d~---------l~~dA 1537 (1630)
T 1xi4_A 1472 ITEEDYQALRTSIDAYDNFDNISLAQRLEKH-----ELIEFRRIAAYLFKGNNRWKQSVELCKKDS---------LYKDA 1537 (1630)
T ss_pred cCccchHHHHHHHhhccCcCHHHHHHHhhhh-----hHHHHHHHHHHHHHhcCcHHHHHHHHHhcc---------CHHHH
Confidence 444443321 1111222211 112223343 45556688988888887652 34456
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHH
Q 004352 644 IDSFCKTGGINSGYCLLLENIDKGFIPSLSTIGRVINCLCVDHRVHEAVG 693 (759)
Q Consensus 644 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 693 (759)
+.+..++|+.+.+..++.-.+.. -+.+.+-..+-.++..-+.|-+.+
T Consensus 1538 m~~a~~S~d~e~~e~ll~~F~~~---~~~E~f~a~Ly~cy~l~~pd~vle 1584 (1630)
T 1xi4_A 1538 MQYASESKDTELAEELLQWFLQE---EKRECFGACLFTCYDLLRPDVVLE 1584 (1630)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc---CChhHHHHHHHHHhccCCchHHHH
Confidence 66778888888888887777763 245556666666666666666665
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.90 E-value=5.8e-20 Score=186.07 Aligned_cols=318 Identities=10% Similarity=0.022 Sum_probs=172.3
Q ss_pred cHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 004352 323 SYNAVIDGYCKAGMISSADKILNDAIFKGFVPDEFTYCSLINGLCQDGDVDRAMAVYVKALEKGLKPSIVLYNTLIKGLS 402 (759)
Q Consensus 323 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 402 (759)
.+..+...+...|++++|...++.+.... +.+...+..+...+...|++++|...++++.+..+. +...+..+...+.
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHHHHH
Confidence 34444445555555555555555554432 123444445555555555555555555555544322 3444455555555
Q ss_pred hcCCHHHHHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHH
Q 004352 403 QQGLILQALQLMNEMSESGCCP----DMWTYNIVINGLCKMGCVSDANNLVNDAISKGYIPDIFTFNTLIDGYCKQLKME 478 (759)
Q Consensus 403 ~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 478 (759)
..|++++|...++++.+. .| +...+..+..... ...+..+...+...|+++
T Consensus 83 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHH
T ss_pred HcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHH
Confidence 555555555555555443 12 1111111110000 001112244555666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004352 479 IAIEILNTMWSHGVTPDVITYNSLLNGLCKAAKSEDVMETFKTMIEKRCVPNIITYSILGESLCKAHKITEAFNLLEEME 558 (759)
Q Consensus 479 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 558 (759)
+|...++++.+.. +.+...+..+..++...|++++|+..++++.+.. +.+..++..++..+...|++++|...++++.
T Consensus 138 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 138 AAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6666666665542 2345556666666666666666666666666542 3345556666666666666666666666666
Q ss_pred HCCCCccHHHHH------------HHHHHHHccCChhhHHHHHHHHHHccCCCCchh----hHHHHHHHHHhcCCHHHHH
Q 004352 559 NKGLTLDTVAFG------------TLINGFCNSGDLDGAYQLFRRMEDQYKISHTTA----TYNIMINAFSEKLNFYMAE 622 (759)
Q Consensus 559 ~~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~ 622 (759)
+. .+.+...+. .++..+...|++++|+..++++... .|.+.. .+..++.++...|++++|+
T Consensus 216 ~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 216 KL-DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSVAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp HH-CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hh-CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHHccCHHHHH
Confidence 54 122332222 2255566777777777777777766 444442 2445666777777777777
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH
Q 004352 623 KLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSLSTI 675 (759)
Q Consensus 623 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 675 (759)
..++++.+.. +.+..+|..++.++...|++++|...++++++ +.|++...
T Consensus 293 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~ 342 (359)
T 3ieg_A 293 RICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE--HNENDQQI 342 (359)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHH
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCChHH
Confidence 7777776542 33466777777777777777777777777777 66664443
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.89 E-value=3.1e-20 Score=188.07 Aligned_cols=302 Identities=12% Similarity=0.050 Sum_probs=166.4
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 004352 390 SIVLYNTLIKGLSQQGLILQALQLMNEMSESGCCPDMWTYNIVINGLCKMGCVSDANNLVNDAISKGYIPDIFTFNTLID 469 (759)
Q Consensus 390 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 469 (759)
++..+..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++.+.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 45567777777888888888888888877753 2356677777777888888888888888877653 335677777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHH
Q 004352 470 GYCKQLKMEIAIEILNTMWSHGVT--PDVITYNSL------------LNGLCKAAKSEDVMETFKTMIEKRCVPNIITYS 535 (759)
Q Consensus 470 ~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 535 (759)
.+...|++++|...++++.+.... .+...+..+ ...+...|++++|++.++++.+.. +.+...+.
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 158 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRE 158 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHH
Confidence 888888888888888887765310 133333333 244445555555555555555442 22344445
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHH-------
Q 004352 536 ILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIM------- 608 (759)
Q Consensus 536 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l------- 608 (759)
.++..+...|++++|...++++.+. .+.+...+..++.+|...|++++|...|+++... .|.+...+..+
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~ 235 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKL-KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLN 235 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTT-CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHH
Confidence 5555555555555555555555543 2334445555555555555555555555555544 34443333211
Q ss_pred -----HHHHHhcCCHHHHHHHHHHHHHcCCCCCH----hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHH
Q 004352 609 -----INAFSEKLNFYMAEKLFYEMSEKGCPPDN----YTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPS-LSTIGRV 678 (759)
Q Consensus 609 -----~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l 678 (759)
+..+...|++++|+..++++.+.. +.+. ..+..++.++...|++++|+..++++++ ..|+ ...+..+
T Consensus 236 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~ 312 (359)
T 3ieg_A 236 KLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQ--MEPDNVNALKDR 312 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCcccHHHHHHH
Confidence 334444555555555555544431 1112 1123344444555555555555555554 3342 2333333
Q ss_pred HHHHHhcCcHHHHHHHHHHHHH
Q 004352 679 INCLCVDHRVHEAVGFVHLMVQ 700 (759)
Q Consensus 679 ~~~~~~~g~~~~A~~~~~~~~~ 700 (759)
...+...|++++|.+.++++.+
T Consensus 313 ~~~~~~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 313 AEAYLIEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 3444445555555555555444
No 17
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.89 E-value=3e-18 Score=180.68 Aligned_cols=382 Identities=12% Similarity=0.052 Sum_probs=245.9
Q ss_pred ChhcHHHHHHHHHH----cCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCH
Q 004352 320 DGFSYNAVIDGYCK----AGMISSADKILNDAIFKGFVPDEFTYCSLINGLCQ----DGDVDRAMAVYVKALEKGLKPSI 391 (759)
Q Consensus 320 ~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~ 391 (759)
+...+..+...|.. .++++.|...|+...+.+ ++..+..+...|.. .+++++|..+|++..+.+ ++
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 44455555555555 566777777777666553 44556666666666 667777777777766653 55
Q ss_pred HhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHhh
Q 004352 392 VLYNTLIKGLSQ----QGLILQALQLMNEMSESGCCPDMWTYNIVINGLCK----MGCVSDANNLVNDAISKGYIPDIFT 463 (759)
Q Consensus 392 ~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 463 (759)
..+..|...|.. .+++++|+..|++..+.| +...+..+...|.. .+++++|...|++..+.+ +...
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 556666666666 567777777777766654 45555666666665 567777777777776653 5666
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhcHH
Q 004352 464 FNTLIDGYCK----QLKMEIAIEILNTMWSHGVTPDVITYNSLLNGLCK----AAKSEDVMETFKTMIEKRCVPNIITYS 535 (759)
Q Consensus 464 ~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 535 (759)
+..+...|.. .+++++|.+.|++..+.+ +...+..+...|.. .+++++|..+|++..+.+ +...+.
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 259 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQF 259 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 6666666666 677777777777777653 45566666666665 667777777777776653 445566
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHcc-----CChhhHHHHHHHHHHccCCCCchhhHH
Q 004352 536 ILGESLCK----AHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNS-----GDLDGAYQLFRRMEDQYKISHTTATYN 606 (759)
Q Consensus 536 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~ 606 (759)
.++..+.. .+++++|..+|++..+.+ +...+..+...|... +++++|+..|+++.+. .++..+.
T Consensus 260 ~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~ 332 (490)
T 2xm6_A 260 RLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----GDATAQA 332 (490)
T ss_dssp HHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----TCHHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----CCHHHHH
Confidence 66666666 677777777777776653 445566666666665 7777777777777665 2445667
Q ss_pred HHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004352 607 IMINAFSEKL---NFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCK----TGGINSGYCLLLENIDKGFIPSLSTIGRVI 679 (759)
Q Consensus 607 ~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 679 (759)
.++.+|...| ++++|+++|+++.+. .++..+..|+..|.. .+++++|+.+|+++.+.| +...+..+.
T Consensus 333 ~lg~~y~~~g~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg 406 (490)
T 2xm6_A 333 NLGAIYFRLGSEEEHKKAVEWFRKAAAK---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLG 406 (490)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHhCCCcccHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHH
Confidence 7777777655 677777777777765 356677777777777 677788888888777743 344555566
Q ss_pred HHHHh----cCcHHHHHHHHHHHHHCCCC-Cc--hHHHHHhc-cccccccchHHHHHHHhc
Q 004352 680 NCLCV----DHRVHEAVGFVHLMVQKGIV-PE--VVNTIFEA-DKREVASPKIVVEDLLKK 732 (759)
Q Consensus 680 ~~~~~----~g~~~~A~~~~~~~~~~~~~-p~--~~~~~~~~-~~~~~~~a~~~~~~~~~~ 732 (759)
..+.. .++.++|..+++++.+.+.. |+ .....+.. .....+.+....+++.+.
T Consensus 407 ~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~~~~~a~~~a~~~~~~ 467 (490)
T 2xm6_A 407 EIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAKQLQQAELLSQQYIEK 467 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHhHHHHHHHHHHHHHHH
Confidence 65655 67788888888877775543 22 11112222 223334455555555554
No 18
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.88 E-value=1.7e-17 Score=174.87 Aligned_cols=352 Identities=14% Similarity=0.076 Sum_probs=265.9
Q ss_pred CcchHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHH----cCChhHHHHHHHHHHhCCCCCCc
Q 004352 285 DVVTYNTLMCGLCK----NSKVVEAEYYLHKMVNEGLEPDGFSYNAVIDGYCK----AGMISSADKILNDAIFKGFVPDE 356 (759)
Q Consensus 285 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 356 (759)
+...+..+...|.. .+++++|...|++..+.| +...+..+...|.. .+++++|.+.|++....+ ++
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 44445555555555 566666666666666543 44455566666666 667777777777776654 44
Q ss_pred ccHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHH
Q 004352 357 FTYCSLINGLCQ----DGDVDRAMAVYVKALEKGLKPSIVLYNTLIKGLSQ----QGLILQALQLMNEMSESGCCPDMWT 428 (759)
Q Consensus 357 ~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 428 (759)
..+..+...|.. .+++++|...|++..+.+ ++..+..|...|.. .+++++|+..|++..+.| +...
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 556666666666 677788888887777664 56667777777766 677888888888877764 5667
Q ss_pred HHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004352 429 YNIVINGLCK----MGCVSDANNLVNDAISKGYIPDIFTFNTLIDGYCK----QLKMEIAIEILNTMWSHGVTPDVITYN 500 (759)
Q Consensus 429 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~ 500 (759)
+..+...|.. .+++++|..+|+...+.+ +...+..+...|.. .+++++|...|++..+.+ +...+.
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 259 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQF 259 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 7777777776 788888888888877764 56667777777775 788888888888888753 556677
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCccHHHHHH
Q 004352 501 SLLNGLCK----AAKSEDVMETFKTMIEKRCVPNIITYSILGESLCKA-----HKITEAFNLLEEMENKGLTLDTVAFGT 571 (759)
Q Consensus 501 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~ 571 (759)
.+...|.. .+++++|+..|++..+.+ +...+..++..|... +++++|...+++..+.+ +...+..
T Consensus 260 ~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 333 (490)
T 2xm6_A 260 RLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQAN 333 (490)
T ss_dssp HHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHH
Confidence 77777777 788999999999888764 556777788888776 89999999999998864 4567778
Q ss_pred HHHHHHccC---ChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 004352 572 LINGFCNSG---DLDGAYQLFRRMEDQYKISHTTATYNIMINAFSE----KLNFYMAEKLFYEMSEKGCPPDNYTYRIMI 644 (759)
Q Consensus 572 l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 644 (759)
+..+|...| ++++|++.|++..+. .++..+..++.+|.. .+++++|+.+|+++.+.+ ++..+..|+
T Consensus 334 lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg 406 (490)
T 2xm6_A 334 LGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLG 406 (490)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHH
Confidence 888887766 789999999999876 367889999999998 899999999999998764 577888899
Q ss_pred HHHHh----cCChHHHHHHHHHHHhCC
Q 004352 645 DSFCK----TGGINSGYCLLLENIDKG 667 (759)
Q Consensus 645 ~~~~~----~g~~~~A~~~~~~~~~~g 667 (759)
..|.. .+++++|..+|+++.+.|
T Consensus 407 ~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 407 EIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 99988 899999999999999843
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.86 E-value=3.9e-19 Score=177.63 Aligned_cols=292 Identities=9% Similarity=-0.009 Sum_probs=185.5
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 004352 390 SIVLYNTLIKGLSQQGLILQALQLMNEMSESGCCPDMWTYNIVINGLCKMGCVSDANNLVNDAISKGYIPDIFTFNTLID 469 (759)
Q Consensus 390 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 469 (759)
+...+..+...+...|++++|..+++++.+.. +.+...+..++..+...|++++|..+++++.... +.+...+..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 34444455555555555555555555555442 1233344444555555566666666666655542 234555666666
Q ss_pred HHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHH
Q 004352 470 GYCKQL-KMEIAIEILNTMWSHGVTPDVITYNSLLNGLCKAAKSEDVMETFKTMIEKRCVPNIITYSILGESLCKAHKIT 548 (759)
Q Consensus 470 ~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 548 (759)
.+...| ++++|...|+++.... +.+...|..+..++...|++++|+..|+++.+.. +.+...+..++..+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 666666 6666777766666543 2245566666777777777777777777776653 224455666777777777777
Q ss_pred HHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccC-------CCCchhhHHHHHHHHHhcCCHHHH
Q 004352 549 EAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYK-------ISHTTATYNIMINAFSEKLNFYMA 621 (759)
Q Consensus 549 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A 621 (759)
+|...++++.+. .+.+...+..++.++...|++++|...++++..... .|....++..++.++...|++++|
T Consensus 177 ~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSI-APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHh-CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 777777777765 345667777777777778888888888777766421 145566778888888888888888
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH-HHHHHHH-HhcCcHH
Q 004352 622 EKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSLSTI-GRVINCL-CVDHRVH 689 (759)
Q Consensus 622 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~-~~l~~~~-~~~g~~~ 689 (759)
+..++++.+.. +.+..+|..++.++...|++++|..+++++++ +.|++... ..+..++ ...|+.+
T Consensus 256 ~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 256 LDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALG--LRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT--TCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHc--cCCCchHHHHHHHHHHHHHhCchh
Confidence 88888877653 33467777888888888888888888888877 66754433 4444444 3445543
No 20
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.86 E-value=6.8e-19 Score=175.82 Aligned_cols=292 Identities=11% Similarity=-0.036 Sum_probs=220.9
Q ss_pred CCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 004352 353 VPDEFTYCSLINGLCQDGDVDRAMAVYVKALEKGLKPSIVLYNTLIKGLSQQGLILQALQLMNEMSESGCCPDMWTYNIV 432 (759)
Q Consensus 353 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 432 (759)
+.+...+..++..+...|++++|..+|+++....+. +...+..++..+...|++++|...++++.+.. +.+...+..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 345566667777777777888888877777776544 55566666677777778888888877777653 2355667777
Q ss_pred HHHHHhcC-ChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004352 433 INGLCKMG-CVSDANNLVNDAISKGYIPDIFTFNTLIDGYCKQLKMEIAIEILNTMWSHGVTPDVITYNSLLNGLCKAAK 511 (759)
Q Consensus 433 ~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 511 (759)
...+...| ++++|...++.+.... +.+...+..+...+...|++++|...++++.+... .+...+..+...+...|+
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-GCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhh
Confidence 77777777 7888888888777654 33566777788888888888888888888777532 245566667788888888
Q ss_pred HHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CCccHHHHHHHHHHHHccCChh
Q 004352 512 SEDVMETFKTMIEKRCVPNIITYSILGESLCKAHKITEAFNLLEEMENKG--------LTLDTVAFGTLINGFCNSGDLD 583 (759)
Q Consensus 512 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~ 583 (759)
+++|...++++.+.. +.+...+..++..+...|++++|...++++.+.. .+....++..++.+|...|+++
T Consensus 175 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 175 SKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 888888888887763 3456778888888888888888888888887631 1344568888999999999999
Q ss_pred hHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHhhHHHHHHHH-HhcCCh
Q 004352 584 GAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPP-DNYTYRIMIDSF-CKTGGI 653 (759)
Q Consensus 584 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~-~~~g~~ 653 (759)
+|+..|+++.+. .|.+..++..++.++...|++++|...++++.+. .| +...+..++.++ ...|+.
T Consensus 254 ~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 254 EALDYHRQALVL--IPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL--RRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT--CSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHhh--CccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhCch
Confidence 999999999988 7888899999999999999999999999999854 45 477888888877 455554
No 21
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.85 E-value=2.3e-17 Score=175.78 Aligned_cols=436 Identities=9% Similarity=0.071 Sum_probs=225.7
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 004352 204 FDEMLGMGISPDIATFNKLIHTLCKKGNVRESEKLFNKVLKRGVSPNLFTFNMFIQGLCRKGAISEAISLLDSLGREDLT 283 (759)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 283 (759)
|++.++.. +-+...|..++. +.+.|+++.|..+|+++++. .+.+...|..++..+.+.|++++|..+|++.... .
T Consensus 2 le~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~ 76 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--V 76 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--C
T ss_pred hhhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--C
Confidence 44444442 336677887777 46788899999999888876 3446778888888888888999999999888866 3
Q ss_pred CCcchHHHHHHHH-HhCCChHHHHH----HHHHHHHC-CCCC-ChhcHHHHHHHHHH---------cCChhHHHHHHHHH
Q 004352 284 PDVVTYNTLMCGL-CKNSKVVEAEY----YLHKMVNE-GLEP-DGFSYNAVIDGYCK---------AGMISSADKILNDA 347 (759)
Q Consensus 284 ~~~~~~~~l~~~~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~ll~~~~~---------~~~~~~a~~~~~~~ 347 (759)
|+...|...+... ...|+.++|.+ +|+..... |..| +...|...+....+ .|+++.|..+|+++
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 5666676666433 34566666654 55555442 4333 33455555554433 45555555555555
Q ss_pred HhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 004352 348 IFKGFVPDEFTYCSLINGLCQDGDVDRAMAVYVKALEKGLKPSIVLYNTLIKGLSQQGLILQALQLMNEMSESGCCPDMW 427 (759)
Q Consensus 348 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 427 (759)
+.. |... ...+...|.. ++... +..+...++. ...+++..|..++..+...
T Consensus 157 l~~---P~~~-~~~~~~~~~~---~e~~~-------------~~~~~~~~l~--~~~~~~~~A~~~~~~~~~~------- 207 (530)
T 2ooe_A 157 CVN---PMIN-IEQLWRDYNK---YEEGI-------------NIHLAKKMIE--DRSRDYMNARRVAKEYETV------- 207 (530)
T ss_dssp TTS---CCTT-HHHHHHHHHH---HHHHH-------------CHHHHHHHHH--TTHHHHHHHHHHHHHHHHH-------
T ss_pred Hhc---hhhh-HHHHHHHHHH---HHHhh-------------chhHHHHHHH--HhhHHHHHHHHHHHHHHHH-------
Confidence 542 1110 0000001100 00000 0000000000 0112233343333321100
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCC---CCCC--------HhhHHHHHHHHHhc----CCH----HHHHHHHHHHH
Q 004352 428 TYNIVINGLCKMGCVSDANNLVNDAISKG---YIPD--------IFTFNTLIDGYCKQ----LKM----EIAIEILNTMW 488 (759)
Q Consensus 428 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~--------~~~~~~l~~~~~~~----~~~----~~A~~~~~~~~ 488 (759)
....+.. ++|+ ...|...+...... ++. ..+..+|++++
T Consensus 208 ----------------------~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al 265 (530)
T 2ooe_A 208 ----------------------MKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCL 265 (530)
T ss_dssp ----------------------HHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHH
T ss_pred ----------------------HHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHH
Confidence 0000000 1111 12222222211111 111 24555565555
Q ss_pred HCCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHH
Q 004352 489 SHGVTPDVITYNSLLNGLCK-------AAKSE-------DVMETFKTMIEKRCVPNIITYSILGESLCKAHKITEAFNLL 554 (759)
Q Consensus 489 ~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 554 (759)
... +.+...|..++..+.+ .|+++ +|..+|++.++.-.+.+...+..++..+...|++++|..+|
T Consensus 266 ~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~ 344 (530)
T 2ooe_A 266 LVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIY 344 (530)
T ss_dssp HHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 532 2245556555555543 45554 66666666664211224555666666666666666666666
Q ss_pred HHHHHCCCCccH-HHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHH-HHhcCCHHHHHHHHHHHHHcC
Q 004352 555 EEMENKGLTLDT-VAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINA-FSEKLNFYMAEKLFYEMSEKG 632 (759)
Q Consensus 555 ~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~ 632 (759)
+++++.. +.+. ..|..++..+.+.|++++|+.+|+++.+. .|.+...|...+.. +...|++++|..+|+++++..
T Consensus 345 ~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~ 421 (530)
T 2ooe_A 345 NRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY 421 (530)
T ss_dssp HHHHHSS-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHhCcc-ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC
Confidence 6666641 2222 35666666666666677777777666655 33344444333332 234666777777777666542
Q ss_pred CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 004352 633 CPPDNYTYRIMIDSFCKTGGINSGYCLLLENIDKG-FIPS--LSTIGRVINCLCVDHRVHEAVGFVHLMVQ 700 (759)
Q Consensus 633 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 700 (759)
+.++..|..++..+...|+.++|..+|++++..+ ..|+ ...|...+......|+.+.+.++.+++.+
T Consensus 422 -p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 422 -GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp -TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2236666666666666677777777777776631 1221 22344444444556777777777766665
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.84 E-value=2.3e-19 Score=182.38 Aligned_cols=286 Identities=12% Similarity=-0.037 Sum_probs=200.2
Q ss_pred cCCHHHHHH-HHHHHHhCCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHH
Q 004352 404 QGLILQALQ-LMNEMSESGC---CPDMWTYNIVINGLCKMGCVSDANNLVNDAISKGYIPDIFTFNTLIDGYCKQLKMEI 479 (759)
Q Consensus 404 ~~~~~~a~~-~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 479 (759)
.|++++|+. .+++...... ..+...+..+...+...|++++|...++.+.+.. +.+..++..+..+|...|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 355666665 5554433211 0123345556666666666666666666666653 3355666666666777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHH----------------HHHHHHHh
Q 004352 480 AIEILNTMWSHGVTPDVITYNSLLNGLCKAAKSEDVMETFKTMIEKRCVPNIITYS----------------ILGESLCK 543 (759)
Q Consensus 480 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----------------~l~~~~~~ 543 (759)
|...|+++.+.. +.+..++..+..++...|++++|+..++++...... +...+. .+...+ .
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 193 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLL-S 193 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHH-H
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHh-h
Confidence 777777666653 235666666677777777777777777777665321 111111 233344 8
Q ss_pred cCCHHHHHHHHHHHHHCCCCc--cHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHH
Q 004352 544 AHKITEAFNLLEEMENKGLTL--DTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMA 621 (759)
Q Consensus 544 ~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 621 (759)
.|++++|...++++.+.. +. +..++..++.+|...|++++|+..|+++... .|.+..++..++.++...|++++|
T Consensus 194 ~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred cccHHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHH
Confidence 889999999999998763 33 5788889999999999999999999999888 788889999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC------------HHHHHHHHHHHHhcCcHH
Q 004352 622 EKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPS------------LSTIGRVINCLCVDHRVH 689 (759)
Q Consensus 622 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~------------~~~~~~l~~~~~~~g~~~ 689 (759)
+..++++.+.. +.+..++..++.+|...|++++|+..++++++ +.|+ ...+..+..++...|+++
T Consensus 271 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 347 (368)
T 1fch_A 271 VAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALN--MQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSD 347 (368)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHHTC------CCCCCHHHHHHHHHHHHHHTCGG
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCCCccccccchhhHHHHHHHHHHHHhCChH
Confidence 99999998763 34588899999999999999999999999987 4443 466777888888999999
Q ss_pred HHHHHHHHHH
Q 004352 690 EAVGFVHLMV 699 (759)
Q Consensus 690 ~A~~~~~~~~ 699 (759)
+|..++++..
T Consensus 348 ~A~~~~~~~l 357 (368)
T 1fch_A 348 AYGAADARDL 357 (368)
T ss_dssp GHHHHHTTCH
T ss_pred hHHHhHHHHH
Confidence 9998887644
No 23
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.84 E-value=6.2e-17 Score=172.50 Aligned_cols=440 Identities=9% Similarity=0.006 Sum_probs=254.7
Q ss_pred HHHhhhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCC
Q 004352 27 FNSVKREDGFKHTLLTYKYMIDKLGFHGNFEEMENLLLEMRMDVDDSLLEGVHIGVMRNYGRRGKVQEAVDVFERMDFYN 106 (759)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 106 (759)
|+...+..| -+...|..++.. .+.|++++|..+|+++....|. +..+|...+..+.+.|++++|..+|+++....
T Consensus 2 le~al~~~P--~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~--~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~ 76 (530)
T 2ooe_A 2 AEKKLEENP--YDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPS--SGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV 76 (530)
T ss_dssp HHHHHHHCT--TCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC
T ss_pred hhhHhhhCC--CCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Confidence 444444433 256667777763 5677777777777777777776 77777777777777777777777777777553
Q ss_pred CCCCHHHHHHHHHHH-HHcCChhHHHH----HHHHHHHC-CCCC-CHHHHHHHHHHHHccCChhhHHHHHhhchhCCCCC
Q 004352 107 CEPTVLSYNTIMNIL-VEYGYFSQVHK----VYMRMRNK-GIVP-DVYTFVIRIKSFCRTRRPHVALRLLKNMPSQGFEP 179 (759)
Q Consensus 107 ~~~~~~~~~~l~~~~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 179 (759)
|++..|...+... ...|+.+.|.+ +|++.+.. |..| +...|...+........ .+
T Consensus 77 --p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~-------------~~--- 138 (530)
T 2ooe_A 77 --LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEA-------------VG--- 138 (530)
T ss_dssp --CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCC-------------CS---
T ss_pred --CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCC-------------cc---
Confidence 4666666666433 34566665544 55555432 3222 34555555544332000 00
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 004352 180 NAVAYCTLIAGFYEENHNVEAYELFDEMLGMGISPDIATFNKLIHTLCKKGNVRESEKLFNKVLKRGVSPNLFTFNMFIQ 259 (759)
Q Consensus 180 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 259 (759)
.+...|+++.|..+|++.++....+....|..........|. ..+..++.
T Consensus 139 ----------~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~-~~~~~~l~------------------- 188 (530)
T 2ooe_A 139 ----------SYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINI-HLAKKMIE------------------- 188 (530)
T ss_dssp ----------STTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCH-HHHHHHHH-------------------
T ss_pred ----------cHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhch-hHHHHHHH-------------------
Confidence 001134444555555554442100001111111110000000 00000000
Q ss_pred HHHhcCCHHHHHHHHHH------HhhCC---CCCC--------cchHHHHHHHHHhC----CCh----HHHHHHHHHHHH
Q 004352 260 GLCRKGAISEAISLLDS------LGRED---LTPD--------VVTYNTLMCGLCKN----SKV----VEAEYYLHKMVN 314 (759)
Q Consensus 260 ~~~~~g~~~~a~~~~~~------~~~~~---~~~~--------~~~~~~l~~~~~~~----~~~----~~a~~~~~~~~~ 314 (759)
.+.+++..|..++.. ..... ++|+ ...|...+...... ++. ..+..+|++...
T Consensus 189 --~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~ 266 (530)
T 2ooe_A 189 --DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLL 266 (530)
T ss_dssp --TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHH
T ss_pred --HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHH
Confidence 011122223322222 11110 1222 12333333222221 122 356667777766
Q ss_pred CCCCCChhcHHHHHHHHHH-------cCChh-------HHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHH
Q 004352 315 EGLEPDGFSYNAVIDGYCK-------AGMIS-------SADKILNDAIFKGFVPDEFTYCSLINGLCQDGDVDRAMAVYV 380 (759)
Q Consensus 315 ~~~~~~~~~~~~ll~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 380 (759)
.. +.+...|...+..+.+ .|+++ .|..++++++..-.+.+...+..++..+.+.|++++|..+|+
T Consensus 267 ~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~ 345 (530)
T 2ooe_A 267 VL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYN 345 (530)
T ss_dssp HH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 52 3355666666666654 57776 788888888763223456778888888888888888888888
Q ss_pred HHHHcCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCChHHHHHHHHHHHHCCCC
Q 004352 381 KALEKGLKPSI-VLYNTLIKGLSQQGLILQALQLMNEMSESGCCPDMWTYNIVING-LCKMGCVSDANNLVNDAISKGYI 458 (759)
Q Consensus 381 ~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~ 458 (759)
++++..+. +. ..|..++..+.+.|++++|..+|++..+... .+...+...... +...|++++|..+|+..++.. +
T Consensus 346 ~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p 422 (530)
T 2ooe_A 346 RLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-G 422 (530)
T ss_dssp HHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-T
T ss_pred HHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-C
Confidence 88886433 32 4788888888888888889888888887532 223333332222 335788999999998887763 3
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004352 459 PDIFTFNTLIDGYCKQLKMEIAIEILNTMWSHGV-TP--DVITYNSLLNGLCKAAKSEDVMETFKTMIEK 525 (759)
Q Consensus 459 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 525 (759)
.++..|..++..+.+.|+.++|..+|++....+. .| ....|...+......|+.+.+..+++++.+.
T Consensus 423 ~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 423 DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4678888888888888999999999998887632 22 2447877788878889999999888888775
No 24
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.82 E-value=1.3e-18 Score=176.83 Aligned_cols=309 Identities=10% Similarity=-0.032 Sum_probs=206.1
Q ss_pred HHHHcCChhHHHH-HHHHHHhCCCC---CCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC
Q 004352 330 GYCKAGMISSADK-ILNDAIFKGFV---PDEFTYCSLINGLCQDGDVDRAMAVYVKALEKGLKPSIVLYNTLIKGLSQQG 405 (759)
Q Consensus 330 ~~~~~~~~~~a~~-~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 405 (759)
.+...|+++.|.+ .+++....... .+...+..+...+...|++++|...|+++.+..+. +...+..+...+...|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENE 112 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCc
Confidence 3445566666666 66654433111 12445666667777777777777777777766543 5666666667777777
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 004352 406 LILQALQLMNEMSESGCCPDMWTYNIVINGLCKMGCVSDANNLVNDAISKGYIPDIFTFNTLIDGYCKQLKMEIAIEILN 485 (759)
Q Consensus 406 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 485 (759)
++++|...++++.+.. +.+..++..+...+...|++++|...++.+...... +...+..+... ..
T Consensus 113 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~------ 177 (368)
T 1fch_A 113 QELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AG------ 177 (368)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC--------------------
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hh------
Confidence 7777777777666653 235556666666666666666666666666655311 22111111000 00
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 004352 486 TMWSHGVTPDVITYNSLLNGLCKAAKSEDVMETFKTMIEKRCVP-NIITYSILGESLCKAHKITEAFNLLEEMENKGLTL 564 (759)
Q Consensus 486 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 564 (759)
. ..+ ...+..+...+ ..|++++|+..|+++.+..... +..++..++..+...|++++|...++++.+. .+.
T Consensus 178 -~----~~~-~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~~~ 249 (368)
T 1fch_A 178 -G----AGL-GPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV-RPN 249 (368)
T ss_dssp --------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT
T ss_pred -h----hcc-cHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CcC
Confidence 0 000 01111233333 7889999999999998864221 4678888999999999999999999999886 355
Q ss_pred cHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--------
Q 004352 565 DTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPD-------- 636 (759)
Q Consensus 565 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-------- 636 (759)
+..++..++.+|...|++++|+..|+++... .|.+..++..++.+|...|++++|+..|+++.+.. +.+
T Consensus 250 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~ 326 (368)
T 1fch_A 250 DYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ-RKSRGPRGEGG 326 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HTC------CC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCCCcccccc
Confidence 7888999999999999999999999999988 78889999999999999999999999999988652 222
Q ss_pred ---HhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004352 637 ---NYTYRIMIDSFCKTGGINSGYCLLLENID 665 (759)
Q Consensus 637 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 665 (759)
..+|..++.+|...|++++|..++++.++
T Consensus 327 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 327 AMSENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp CCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred chhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 57899999999999999999998876554
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.82 E-value=1.5e-18 Score=176.03 Aligned_cols=262 Identities=12% Similarity=-0.033 Sum_probs=191.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004352 428 TYNIVINGLCKMGCVSDANNLVNDAISKGYIPDIFTFNTLIDGYCKQLKMEIAIEILNTMWSHGVTPDVITYNSLLNGLC 507 (759)
Q Consensus 428 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 507 (759)
.+..+...+.+.|++++|...|+.++... +.+..++..+...|...|++++|...|+++.+.. +.+..++..+..+|.
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYT 144 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 45555666666666666666666666543 3356666667777777777777777777766653 224666777777777
Q ss_pred hcCCHHHHHHHHHHHHHcCCC---------CChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc--cHHHHHHHHHHH
Q 004352 508 KAAKSEDVMETFKTMIEKRCV---------PNIITYSILGESLCKAHKITEAFNLLEEMENKGLTL--DTVAFGTLINGF 576 (759)
Q Consensus 508 ~~~~~~~a~~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~ 576 (759)
..|++++|+..|+++.+.... .....+..++..+...|++++|..+++++.+.. +. +..++..++.+|
T Consensus 145 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~~~ 223 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTGLGVLF 223 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHHHHHHH
Confidence 777777777777777664211 012233345778888999999999999998863 33 688899999999
Q ss_pred HccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHH
Q 004352 577 CNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSG 656 (759)
Q Consensus 577 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 656 (759)
...|++++|+..|+++.+. .|.+..+|..++.+|...|++++|+..|+++++.. +.+..+|..++.+|...|++++|
T Consensus 224 ~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 224 HLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999988 78889999999999999999999999999998763 33488899999999999999999
Q ss_pred HHHHHHHHhCCCCCC-------------HHHHHHHHHHHHhcCcHHHHHHHHHH
Q 004352 657 YCLLLENIDKGFIPS-------------LSTIGRVINCLCVDHRVHEAVGFVHL 697 (759)
Q Consensus 657 ~~~~~~~~~~g~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~ 697 (759)
+..++++++ +.|+ ...+..+..++...|+.+.|.+..++
T Consensus 301 ~~~~~~al~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 301 VSNFLTALS--LQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHH--HHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHH--hCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999987 4443 35566777777888999888877665
No 26
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.81 E-value=8.9e-17 Score=169.26 Aligned_cols=386 Identities=10% Similarity=-0.062 Sum_probs=201.6
Q ss_pred hhcHHHHHHHHHHcCChhHHHHHHHHHHhC-----C---CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----C
Q 004352 321 GFSYNAVIDGYCKAGMISSADKILNDAIFK-----G---FVPDEFTYCSLINGLCQDGDVDRAMAVYVKALEKG-----L 387 (759)
Q Consensus 321 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~ 387 (759)
...|+.+...+...|++++|++.|++.++. + .+....+|..+..+|...|++++|...++++.+.. .
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 345666666666677777777777665431 0 11123455666666666677777766666655420 0
Q ss_pred --CCCHHhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH---HHhcCChHHHHHHHHHHHHCCCCCC
Q 004352 388 --KPSIVLYNTLIKGLSQQ--GLILQALQLMNEMSESGCCPDMWTYNIVING---LCKMGCVSDANNLVNDAISKGYIPD 460 (759)
Q Consensus 388 --~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~~ 460 (759)
.....++..+..++... +++++|+..|++..+... -+...+..+..+ +...++.++|...+++.++.. +.+
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p-~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~ 208 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP-KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDN 208 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSC
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccc
Confidence 01233444444444332 346666666666665421 123333333322 223455556666666655542 223
Q ss_pred HhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHH
Q 004352 461 IFTFNTLIDGYCK----QLKMEIAIEILNTMWSHGVTPDVITYNSLLNGLCKAAKSEDVMETFKTMIEKRCVPNIITYSI 536 (759)
Q Consensus 461 ~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 536 (759)
..++..+...+.. .+++++|.+.+++..... +.+...+..+...|...|++++|+..+++..+.. +.+..++..
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 286 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQ 286 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHH
Confidence 4444444333332 345556666666555542 2245555566666666666666666666665542 223334444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcC
Q 004352 537 LGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKL 616 (759)
Q Consensus 537 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 616 (759)
++.+|...+... ... .. ..........+.+++|...++++... .|.+..++..++.+|...|
T Consensus 287 lg~~y~~~~~~~---------~~~-~~------~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~lg~~~~~~~ 348 (472)
T 4g1t_A 287 IGCCYRAKVFQV---------MNL-RE------NGMYGKRKLLELIGHAVAHLKKADEA--NDNLFRVCSILASLHALAD 348 (472)
T ss_dssp HHHHHHHHHHHH---------HHC-------------CHHHHHHHHHHHHHHHHHHHHH--CTTTCCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh---------hhH-HH------HHHHHHHHHHhhHHHHHHHHHHHhhc--CCchhhhhhhHHHHHHHhc
Confidence 444432211000 000 00 00000111123467899999999888 7888999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCH--hhHHHHHH-HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHH
Q 004352 617 NFYMAEKLFYEMSEKGCPPDN--YTYRIMID-SFCKTGGINSGYCLLLENIDKGFIPSLSTIGRVINCLCVDHRVHEAVG 693 (759)
Q Consensus 617 ~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 693 (759)
++++|+..|+++++...+|.. ..+..++. .....|++++|+..|+++++ +.|+....... .+.+.+
T Consensus 349 ~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~~~~~~~---------~~~l~~ 417 (472)
T 4g1t_A 349 QYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKSREKEKM---------KDKLQK 417 (472)
T ss_dssp CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCCHHHHHH---------HHHHHH
T ss_pred cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHHHHHH---------HHHHHH
Confidence 999999999999976433321 23444443 34578999999999999999 88876544333 234455
Q ss_pred HHHHHHHC-CCCCchHHHHHhc--cccccccchHHHHHHHhcCCCchHH
Q 004352 694 FVHLMVQK-GIVPEVVNTIFEA--DKREVASPKIVVEDLLKKSHITYYA 739 (759)
Q Consensus 694 ~~~~~~~~-~~~p~~~~~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~ 739 (759)
++++.... +-.+..+..+... ..|++++|...|+++++.++...+.
T Consensus 418 ~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a 466 (472)
T 4g1t_A 418 IAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSA 466 (472)
T ss_dssp HHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-------------------
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcH
Confidence 56665552 2233355544444 7899999999999999998874443
No 27
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.81 E-value=9.6e-17 Score=169.02 Aligned_cols=277 Identities=14% Similarity=-0.005 Sum_probs=137.0
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH---HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChH
Q 004352 371 DVDRAMAVYVKALEKGLKPSIVLYNTLIKGL---SQQGLILQALQLMNEMSESGCCPDMWTYNIVINGLCK----MGCVS 443 (759)
Q Consensus 371 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~ 443 (759)
++++|+..|+++.+..+. ++..+..+..++ ...++.++|++.+++..+.. +.+..++..+...+.. .++++
T Consensus 153 ~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~ 230 (472)
T 4g1t_A 153 QNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEG 230 (472)
T ss_dssp HHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------C
T ss_pred cHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHH
Confidence 455555555555554433 333333333332 22344455555555554432 1133333333333222 23445
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---------------
Q 004352 444 DANNLVNDAISKGYIPDIFTFNTLIDGYCKQLKMEIAIEILNTMWSHGVTPDVITYNSLLNGLCK--------------- 508 (759)
Q Consensus 444 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------------- 508 (759)
+|...+++..... +.+..++..+...|...|++++|...++++.+.. +.+..++..+..+|..
T Consensus 231 ~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~ 308 (472)
T 4g1t_A 231 EGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYG 308 (472)
T ss_dssp HHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC------C
T ss_pred HHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 5555555555442 3344555555555666666666666666555542 1134444444443322
Q ss_pred ----cCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHH--HHHHHHH-HHHccCC
Q 004352 509 ----AAKSEDVMETFKTMIEKRCVPNIITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTV--AFGTLIN-GFCNSGD 581 (759)
Q Consensus 509 ----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~g~ 581 (759)
.+..++|...++...+.. +.+..++..++..+...|++++|...|+++++...++... .+..+.. .+...|+
T Consensus 309 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (472)
T 4g1t_A 309 KRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKC 387 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCC
Confidence 223456677777766653 3355667777777777788888888887777653332221 1222222 2345677
Q ss_pred hhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHH
Q 004352 582 LDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCLLL 661 (759)
Q Consensus 582 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 661 (759)
+++|+..|+++... .|.+... .+....+..++++.++.. |.++.+|..++.+|...|++++|+.+|+
T Consensus 388 ~~~Ai~~y~kal~i--~~~~~~~----------~~~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~ 454 (472)
T 4g1t_A 388 EDKAIHHFIEGVKI--NQKSREK----------EKMKDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSE 454 (472)
T ss_dssp HHHHHHHHHHHHHS--CCCCHHH----------HHHHHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHHHHhc--CcccHHH----------HHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 77777777777766 4443221 122233445555555442 3446777777777777777777777777
Q ss_pred HHHh
Q 004352 662 ENID 665 (759)
Q Consensus 662 ~~~~ 665 (759)
++++
T Consensus 455 kALe 458 (472)
T 4g1t_A 455 RGLE 458 (472)
T ss_dssp ----
T ss_pred HHHh
Confidence 7777
No 28
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.80 E-value=1.5e-17 Score=160.84 Aligned_cols=272 Identities=13% Similarity=0.059 Sum_probs=187.0
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHH
Q 004352 401 LSQQGLILQALQLMNEMSESGCCPDM--WTYNIVINGLCKMGCVSDANNLVNDAISKGYIPDIFTFNTLIDGYCKQLKME 478 (759)
Q Consensus 401 ~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 478 (759)
....|++..|+..++..... .|+. .....+.++|...|+++.|...++. ..+|+..++..+...+...++.+
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHH
Confidence 44567777777777665433 2222 2344556777777777777765543 12445566677777777777788
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHH
Q 004352 479 IAIEILNTMWSHGVTP-DVITYNSLLNGLCKAAKSEDVMETFKTMIEKRCVPNIITYSILGESLCKAHKITEAFNLLEEM 557 (759)
Q Consensus 479 ~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 557 (759)
+|++.++++...+..| +...+..+..++...|++++|++.+++ +.+...+..++..+.+.|++++|...++++
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 8888888777655333 455666666777788888888877776 346667777788888888888888888888
Q ss_pred HHCCCCccHH-H--HHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 004352 558 ENKGLTLDTV-A--FGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCP 634 (759)
Q Consensus 558 ~~~~~~~~~~-~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 634 (759)
.+.. |+.. . ...++..+...|++++|..+|+++.+. .|+++.+++.++.++...|++++|+..++++++.. |
T Consensus 157 ~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p 231 (291)
T 3mkr_A 157 QDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-S 231 (291)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 7652 3321 1 122334445568888888888888887 78888888888888888888888888888888663 3
Q ss_pred CCHhhHHHHHHHHHhcCChHH-HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHH
Q 004352 635 PDNYTYRIMIDSFCKTGGINS-GYCLLLENIDKGFIPSLSTIGRVINCLCVDHRVHEAVGF 694 (759)
Q Consensus 635 p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 694 (759)
.++.++..++.++...|+.++ +..+++++++ +.|+++....+ ..+.+.+++|..-
T Consensus 232 ~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~~~~~~d~---~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 232 GHPETLINLVVLSQHLGKPPEVTNRYLSQLKD--AHRSHPFIKEY---RAKENDFDRLVLQ 287 (291)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHHHHHH---HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--hCCCChHHHHH---HHHHHHHHHHHHH
Confidence 347888888888888888866 5688888888 77876654322 2344555555443
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.80 E-value=1.6e-17 Score=165.55 Aligned_cols=261 Identities=13% Similarity=-0.002 Sum_probs=179.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004352 431 IVINGLCKMGCVSDANNLVNDAISKGYIPDIFTFNTLIDGYCKQLKMEIAIEILNTMWSHGVTPDVITYNSLLNGLCKAA 510 (759)
Q Consensus 431 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 510 (759)
.....+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+..++...|
T Consensus 26 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~ 103 (327)
T 3cv0_A 26 EEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEH 103 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcC
Confidence 33344444444444544444444432 2234444445555555555555555555554432 224445555555555555
Q ss_pred CHHHHHHHHHHHHHcCCCCChhcHHHH--------------HH-HHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHH
Q 004352 511 KSEDVMETFKTMIEKRCVPNIITYSIL--------------GE-SLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLING 575 (759)
Q Consensus 511 ~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 575 (759)
++++|+..++++.+.. +.+...+..+ .. .+...|++++|...++++.+. .+.+...+..++.+
T Consensus 104 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~ 181 (327)
T 3cv0_A 104 NANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM-NPNDAQLHASLGVL 181 (327)
T ss_dssp CHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHH-STTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhh-CCCCHHHHHHHHHH
Confidence 5555555555555442 1122222222 22 366778899999999999876 35578888999999
Q ss_pred HHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHH
Q 004352 576 FCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINS 655 (759)
Q Consensus 576 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 655 (759)
|...|++++|...++++... .|.+..++..++.++...|++++|+..++++.+.. +.+..++..++.++...|++++
T Consensus 182 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~ 258 (327)
T 3cv0_A 182 YNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDL 258 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHH
Confidence 99999999999999999988 78888999999999999999999999999998763 4458889999999999999999
Q ss_pred HHHHHHHHHhCCCCCC-------------HHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 004352 656 GYCLLLENIDKGFIPS-------------LSTIGRVINCLCVDHRVHEAVGFVHLMVQ 700 (759)
Q Consensus 656 A~~~~~~~~~~g~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 700 (759)
|+..++++++ ..|+ ...+..+...+...|++++|..++++..+
T Consensus 259 A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 259 AAKQLVRAIY--MQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp HHHHHHHHHH--HHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred HHHHHHHHHH--hCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 9999999988 5566 44556677777899999999998876543
No 30
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.79 E-value=1.1e-17 Score=169.50 Aligned_cols=274 Identities=9% Similarity=-0.043 Sum_probs=182.6
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004352 356 EFTYCSLINGLCQDGDVDRAMAVYVKALEKGLKPSIVLYNTLIKGLSQQGLILQALQLMNEMSESGCCPDMWTYNIVING 435 (759)
Q Consensus 356 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 435 (759)
...+..+...+.+.|++++|..+|+++....+. +..++..+...+...|++++|+..|+++.... +.+..++..+...
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 334556666666666666666666666665443 55556666666666666666666666655542 1234455555555
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004352 436 LCKMGCVSDANNLVNDAISKGYIPD-IFTFNTLIDGYCKQLKMEIAIEILNTMWSHGVTPDVITYNSLLNGLCKAAKSED 514 (759)
Q Consensus 436 ~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 514 (759)
|...|++++|...++++.+.. |+ ...+..+. .....+..+...+...|++++
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~-------------------------~~~~~~~~l~~~~~~~g~~~~ 195 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN--PKYKYLVKNKK-------------------------GSPGLTRRMSKSPVDSSVLEG 195 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--HHHHCC--------------------------------------------CCHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhC--ccchHHHhhhc-------------------------cchHHHHHHHHHHhhhhhHHH
Confidence 555555555555555554431 11 11111000 012234445677788888888
Q ss_pred HHHHHHHHHHcCCC-CChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHH
Q 004352 515 VMETFKTMIEKRCV-PNIITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRME 593 (759)
Q Consensus 515 a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 593 (759)
|+..|+++.+.... ++..++..++..+...|++++|...++++.+. .+.+..++..++.+|...|++++|+..|+++.
T Consensus 196 A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 274 (365)
T 4eqf_A 196 VKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV-RPEDYSLWNRLGATLANGDRSEEAVEAYTRAL 274 (365)
T ss_dssp HHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88888888876422 15678888888888899999999999998876 45578888999999999999999999999998
Q ss_pred HccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-------------CHhhHHHHHHHHHhcCChHHHHHHH
Q 004352 594 DQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPP-------------DNYTYRIMIDSFCKTGGINSGYCLL 660 (759)
Q Consensus 594 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-------------~~~~~~~l~~~~~~~g~~~~A~~~~ 660 (759)
.. .|.+..++..++.+|...|++++|+..|+++.+. .| +..+|..+..++...|+.+.+..+.
T Consensus 275 ~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 350 (365)
T 4eqf_A 275 EI--QPGFIRSRYNLGISCINLGAYREAVSNFLTALSL--QRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAAN 350 (365)
T ss_dssp HH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--HHCC------------CHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hc--CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 88 7888899999999999999999999999998864 22 2578999999999999999988877
Q ss_pred HHH
Q 004352 661 LEN 663 (759)
Q Consensus 661 ~~~ 663 (759)
++.
T Consensus 351 ~~~ 353 (365)
T 4eqf_A 351 LGD 353 (365)
T ss_dssp TTC
T ss_pred Hhh
Confidence 664
No 31
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.79 E-value=1.5e-16 Score=155.87 Aligned_cols=289 Identities=11% Similarity=0.051 Sum_probs=103.3
Q ss_pred HHHHHHhcCCChHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHh
Q 004352 9 HVAAVVKHQKNPLTALEMFNSVKREDGFKHTLLTYKYMIDKLGFHGNFEEMENLLLEMRMDVDDSLLEGVHIGVMRNYGR 88 (759)
Q Consensus 9 ~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 88 (759)
-+..++...|+.++|.++++.. +.+.+|..++.++.+.|++++|++.|.++. +...+..++..+..
T Consensus 8 a~~~ll~~~~~ld~A~~fae~~-------~~~~vWs~La~A~l~~g~~~eAIdsfika~-------D~~~y~~V~~~ae~ 73 (449)
T 1b89_A 8 AVQVLIEHIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDSYIKAD-------DPSSYMEVVQAANT 73 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHccCHHHHHHHHHhC-------CChHHHHHHHHHHHHcCCHHHHHHHHHcCC-------CHHHHHHHHHHHHh
Confidence 3555666777888888888875 123577788888888888888888886531 33467777777778
Q ss_pred cCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHH
Q 004352 89 RGKVQEAVDVFERMDFYNCEPTVLSYNTIMNILVEYGYFSQVHKVYMRMRNKGIVPDVYTFVIRIKSFCRTRRPHVALRL 168 (759)
Q Consensus 89 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 168 (759)
.|++++|+.+++...+. .+++.+.+.++.+|.+.|++.++.++++ .|+..+|..++..|...|.+++|...
T Consensus 74 ~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~ 144 (449)
T 1b89_A 74 SGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLL 144 (449)
T ss_dssp -------------------------------------CHHHHTTTTT-------CC----------------CTTTHHHH
T ss_pred CCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88888888877666643 3446667778888888888887776663 26666788888888888888888888
Q ss_pred HhhchhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCC
Q 004352 169 LKNMPSQGFEPNAVAYCTLIAGFYEENHNVEAYELFDEMLGMGISPDIATFNKLIHTLCKKGNVRESEKLFNKVLKRGVS 248 (759)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 248 (759)
|..+ ..|..++..+.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+ .
T Consensus 145 Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~ 204 (449)
T 1b89_A 145 YNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----V 204 (449)
T ss_dssp HHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----T
T ss_pred HHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----H
Confidence 8765 35777888888888888888888777 26677788888888888888875544332 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHC-CCCC------Ch
Q 004352 249 PNLFTFNMFIQGLCRKGAISEAISLLDSLGREDLTPDVVTYNTLMCGLCKNSKVVEAEYYLHKMVNE-GLEP------DG 321 (759)
Q Consensus 249 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~------~~ 321 (759)
..+.-...++..|.+.|.+++|..+++...... +.....|+-|.-.+++- .+++..+.++..... +++| +.
T Consensus 205 ~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~ 282 (449)
T 1b89_A 205 VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQA 282 (449)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTT
T ss_pred hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 233334457777777888888888777776543 33344455554444432 233322222222111 1222 33
Q ss_pred hcHHHHHHHHHHcCChhHHHH
Q 004352 322 FSYNAVIDGYCKAGMISSADK 342 (759)
Q Consensus 322 ~~~~~ll~~~~~~~~~~~a~~ 342 (759)
..|..+.-.|...++++.|..
T Consensus 283 ~~w~e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 283 HLWAELVFLYDKYEEYDNAII 303 (449)
T ss_dssp TCHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhhchHHHHHH
Confidence 455555555555555555544
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.79 E-value=2.4e-17 Score=159.39 Aligned_cols=255 Identities=13% Similarity=0.117 Sum_probs=202.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004352 433 INGLCKMGCVSDANNLVNDAISKGYIPD--IFTFNTLIDGYCKQLKMEIAIEILNTMWSHGVTPDVITYNSLLNGLCKAA 510 (759)
Q Consensus 433 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 510 (759)
++.....|++..|+..++..... .|+ ......+..+|...|+++.|+..++.. -+|+..++..+...+...+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCC
Confidence 34556789999999988776443 333 235566788999999999999876542 3567778888888999999
Q ss_pred CHHHHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHH
Q 004352 511 KSEDVMETFKTMIEKRCVP-NIITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLF 589 (759)
Q Consensus 511 ~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 589 (759)
+.++|++.++++...+..| +...+..++.++...|++++|+..+++ +.+...+..++.+|.+.|++++|.+.|
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999998875444 556677888999999999999999987 567888899999999999999999999
Q ss_pred HHHHHccCCCCchhhHHH--HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 004352 590 RRMEDQYKISHTTATYNI--MINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCLLLENIDKG 667 (759)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 667 (759)
+++... .|++...... ++..+...|++++|+.+|+++.+. .+.++..|+.++.++...|++++|...++++++
T Consensus 154 ~~~~~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~-- 228 (291)
T 3mkr_A 154 KKMQDQ--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALD-- 228 (291)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred HHHHhh--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--
Confidence 999988 5655432222 234444568999999999999987 356688999999999999999999999999999
Q ss_pred CCCC-HHHHHHHHHHHHhcCcHHH-HHHHHHHHHHCCCCCc
Q 004352 668 FIPS-LSTIGRVINCLCVDHRVHE-AVGFVHLMVQKGIVPE 706 (759)
Q Consensus 668 ~~p~-~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~p~ 706 (759)
..|+ ...+..++..+...|+.++ +.++++++.+ +.|+
T Consensus 229 ~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~ 267 (291)
T 3mkr_A 229 KDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD--AHRS 267 (291)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTT
T ss_pred hCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--hCCC
Confidence 7786 4456677777788898876 5689999887 5666
No 33
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.77 E-value=3.6e-17 Score=163.01 Aligned_cols=281 Identities=9% Similarity=-0.054 Sum_probs=203.1
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004352 355 DEFTYCSLINGLCQDGDVDRAMAVYVKALEKGLKPSIVLYNTLIKGLSQQGLILQALQLMNEMSESGCCPDMWTYNIVIN 434 (759)
Q Consensus 355 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 434 (759)
+...+..+...+...|++++|..+|+++.+..+. +...+..+...+...|++++|...++++.+.. +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 3445566777777788888888888877776544 66677777777777777777777777777653 235566666677
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HH-HHHhcCCH
Q 004352 435 GLCKMGCVSDANNLVNDAISKGYIPDIFTFNTLIDGYCKQLKMEIAIEILNTMWSHGVTPDVITYNSL-LN-GLCKAAKS 512 (759)
Q Consensus 435 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l-~~-~~~~~~~~ 512 (759)
.+...|++++|...++.+.... +.+...+..+... .|+......+ .. .+...|++
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~ 154 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEY 154 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTS-TTTTTC------------------------------------------CCTTSHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccH
Confidence 7777777777777777776653 1122222222100 0111111122 22 25677888
Q ss_pred HHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHH
Q 004352 513 EDVMETFKTMIEKRCVPNIITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRM 592 (759)
Q Consensus 513 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 592 (759)
++|...++++.+.. +.+...+..++..+...|++++|...++++.+. .+.+...+..++.++...|++++|...|+++
T Consensus 155 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 232 (327)
T 3cv0_A 155 RECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL-RPDDAQLWNKLGATLANGNRPQEALDAYNRA 232 (327)
T ss_dssp HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888888888764 336778888888889999999999999998876 3556788889999999999999999999999
Q ss_pred HHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC------------CHhhHHHHHHHHHhcCChHHHHHHH
Q 004352 593 EDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPP------------DNYTYRIMIDSFCKTGGINSGYCLL 660 (759)
Q Consensus 593 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p------------~~~~~~~l~~~~~~~g~~~~A~~~~ 660 (759)
... .|.+..++..++.++...|++++|.+.++++.+.. +. +..+|..++.++...|++++|..++
T Consensus 233 ~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 309 (327)
T 3cv0_A 233 LDI--NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQ-VGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTY 309 (327)
T ss_dssp HHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHT
T ss_pred HHc--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 888 78888999999999999999999999999988653 22 3678889999999999999999998
Q ss_pred HHHHh
Q 004352 661 LENID 665 (759)
Q Consensus 661 ~~~~~ 665 (759)
+++++
T Consensus 310 ~~~l~ 314 (327)
T 3cv0_A 310 AQNVE 314 (327)
T ss_dssp TCCSH
T ss_pred HHHHH
Confidence 87654
No 34
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.76 E-value=8.3e-17 Score=157.74 Aligned_cols=346 Identities=13% Similarity=0.109 Sum_probs=130.1
Q ss_pred CCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHH
Q 004352 299 NSKVVEAEYYLHKMVNEGLEPDGFSYNAVIDGYCKAGMISSADKILNDAIFKGFVPDEFTYCSLINGLCQDGDVDRAMAV 378 (759)
Q Consensus 299 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 378 (759)
.|++++|.++++++. ++.+|..++.++.+.|++++|++.|.+. +|...|..++..+...|++++|+.+
T Consensus 16 ~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~y 83 (449)
T 1b89_A 16 IGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 344555555555541 1235555555555555555555555431 2444555555555556666666665
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 004352 379 YVKALEKGLKPSIVLYNTLIKGLSQQGLILQALQLMNEMSESGCCPDMWTYNIVINGLCKMGCVSDANNLVNDAISKGYI 458 (759)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 458 (759)
++..++. .+++.+.+.++.+|.+.|++.++.++++ .|+..+|..+...|...|.+++|..+|..+
T Consensus 84 l~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------ 148 (449)
T 1b89_A 84 LQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------ 148 (449)
T ss_dssp ---------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT------
T ss_pred HHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh------
Confidence 5544442 2234555556666666666666555542 245556666666666777777777666644
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHH
Q 004352 459 PDIFTFNTLIDGYCKQLKMEIAIEILNTMWSHGVTPDVITYNSLLNGLCKAAKSEDVMETFKTMIEKRCVPNIITYSILG 538 (759)
Q Consensus 459 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 538 (759)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+. .++.....++
T Consensus 149 ---~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~lv 214 (449)
T 1b89_A 149 ---SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELI 214 (449)
T ss_dssp ---TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHHH
T ss_pred ---hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHHH
Confidence 35667777777777777777777766 156677777777777777777754443321 2333344566
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHcc--CChhhHHHHHHHHHHccCCCC------chhhHHHHHH
Q 004352 539 ESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNS--GDLDGAYQLFRRMEDQYKISH------TTATYNIMIN 610 (759)
Q Consensus 539 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~~------~~~~~~~l~~ 610 (759)
..|.+.|++++|+.+++..+... +-....|..+.-+|++- +++.+.++.|. ..-+.|+ +...|..+..
T Consensus 215 ~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~---~~ini~k~~~~~~~~~~w~e~~~ 290 (449)
T 1b89_A 215 NYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW---SRVNIPKVLRAAEQAHLWAELVF 290 (449)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS---TTSCHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HHhcCcHHHHHHHHHHHHHHHHH
Confidence 67777777777777777776553 44555566665555542 23333444333 2222232 4667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHH
Q 004352 611 AFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSLSTIGRVINCLCVDHRVHE 690 (759)
Q Consensus 611 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~ 690 (759)
.|...++++.|... |.+. +|+..--...-....+..+.+--.+...=-+. ..| ..++.++..+...=+...
T Consensus 291 ly~~~~e~d~A~~t---m~~h--~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~--~~p--~~l~~ll~~l~~~ld~~r 361 (449)
T 1b89_A 291 LYDKYEEYDNAIIT---MMNH--PTDAWKEGQFKDIITKVANVELYYRAIQFYLE--FKP--LLLNDLLMVLSPRLDHTR 361 (449)
T ss_dssp HHHHTTCHHHHHHH---HHHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHH--HCG--GGHHHHHHHHGGGCCHHH
T ss_pred HHHhhchHHHHHHH---HHhC--ChhhhhhHHHHHHHhchhHHHHHHHHHHHHHh--cCH--HHHHHHHHHHHhccCcHH
Confidence 77777777777653 3332 33332223333333444443332222222222 223 224445555555555555
Q ss_pred HHHHHHHH
Q 004352 691 AVGFVHLM 698 (759)
Q Consensus 691 A~~~~~~~ 698 (759)
+...+++.
T Consensus 362 ~v~~~~~~ 369 (449)
T 1b89_A 362 AVNYFSKV 369 (449)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 55555443
No 35
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.73 E-value=9.1e-16 Score=146.86 Aligned_cols=223 Identities=15% Similarity=0.082 Sum_probs=142.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CC----HHHHHH
Q 004352 428 TYNIVINGLCKMGCVSDANNLVNDAISKGYIPDIFTFNTLIDGYCKQLKMEIAIEILNTMWSHGVT--PD----VITYNS 501 (759)
Q Consensus 428 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~----~~~~~~ 501 (759)
.+..+...+...|++++|...++.+.+.. .+...+..+...|...|++++|...++++.+.... ++ ..++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 34445555555566666666665555544 45555556666666666666666666655543110 11 355666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCC
Q 004352 502 LLNGLCKAAKSEDVMETFKTMIEKRCVPNIITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGD 581 (759)
Q Consensus 502 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 581 (759)
+..++...|++++|+..|+++.+.. |+ ...+...|++++|...++.+... .+.+...+..++..+...|+
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~--~~-------~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEH--RT-------ADILTKLRNAEKELKKAEAEAYV-NPEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CC-------HHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC--ch-------hHHHHHHhHHHHHHHHHHHHHHc-CcchHHHHHHHHHHHHHhcC
Confidence 6666667777777777777666642 33 23345556677777777777664 23455566677777777777
Q ss_pred hhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHH
Q 004352 582 LDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCLLL 661 (759)
Q Consensus 582 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 661 (759)
+++|+..|+++... .|.+..++..++.++...|++++|+..++++++.. +.+..+|..++.++...|++++|...++
T Consensus 155 ~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 155 WPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 77777777777776 66677777777777777777777777777777652 3336677777777777777777777777
Q ss_pred HHHh
Q 004352 662 ENID 665 (759)
Q Consensus 662 ~~~~ 665 (759)
++++
T Consensus 232 ~a~~ 235 (258)
T 3uq3_A 232 AART 235 (258)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7776
No 36
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.73 E-value=2.4e-16 Score=145.48 Aligned_cols=198 Identities=10% Similarity=0.018 Sum_probs=130.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHH
Q 004352 494 PDVITYNSLLNGLCKAAKSEDVMETFKTMIEKRCVPNIITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLI 573 (759)
Q Consensus 494 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 573 (759)
++...+..+...+.+.|++++|+..|++.++.. +.+...+..++.++...|++++|+..++++++. .|.+...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~-~P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVAR-TPRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCcHHHHHHHH
Confidence 344555556666666666666666666666543 234556666666666666666666666666654 244555666666
Q ss_pred HHHHcc-----------CChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHH
Q 004352 574 NGFCNS-----------GDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRI 642 (759)
Q Consensus 574 ~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 642 (759)
.++... |++++|+..|+++.+. .|.+...+..++.++...|++++|+..|+++++.. .++..+..
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 666666 8888888888888887 78888888888888888888888888888888775 66788888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCcHHHHHHHHHHHH
Q 004352 643 MIDSFCKTGGINSGYCLLLENIDKGFIPSLS-TIGRVINCLCVDHRVHEAVGFVHLMV 699 (759)
Q Consensus 643 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~ 699 (759)
++.++...|++++|+..|+++++ +.|++. .+..+...+...|++++|++.+++..
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~--~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALE--QAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 88888888888888888888888 677644 44455556678888888888887754
No 37
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.71 E-value=2e-15 Score=156.22 Aligned_cols=188 Identities=12% Similarity=0.057 Sum_probs=90.9
Q ss_pred HHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCccHHHHH
Q 004352 498 TYNSLLNGLCKAA---KSEDVMETFKTMIEKRCVPNIITYSILGESLCKA----HKITEAFNLLEEMENKGLTLDTVAFG 570 (759)
Q Consensus 498 ~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~ 570 (759)
.+..+...|...| +.++|++.|++..+.+ .++...+..++..|... +++++|..+|++.. +-++..+.
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa----~g~~~a~~ 252 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA----PGYPASWV 252 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG----GGSTHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc----CCCHHHHH
Confidence 4445555555555 5555555555555544 22333334444444332 45555555555554 22334444
Q ss_pred HHHHH-H--HccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcC-----CHHHHHHHHHHHHHcCCCCCHhhHHH
Q 004352 571 TLING-F--CNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKL-----NFYMAEKLFYEMSEKGCPPDNYTYRI 642 (759)
Q Consensus 571 ~l~~~-~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~p~~~~~~~ 642 (759)
.+..+ | ...+++++|+..|++..+. .++.++..++.+|. .| ++++|+.+|+++. +-++..+..
T Consensus 253 ~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~----g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa----~g~~~A~~~ 323 (452)
T 3e4b_A 253 SLAQLLYDFPELGDVEQMMKYLDNGRAA----DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV----GREVAADYY 323 (452)
T ss_dssp HHHHHHHHSGGGCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT----TTCHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh----CCCHHHHHH
Confidence 44444 2 3455555666666555543 14455555555555 33 5566666655554 223445555
Q ss_pred HHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCcHHHHHHHHHHHHHCC
Q 004352 643 MIDSFCK----TGGINSGYCLLLENIDKGFIPSLSTIGRVINCLCV----DHRVHEAVGFVHLMVQKG 702 (759)
Q Consensus 643 l~~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 702 (759)
|+..|.. ..++++|..+|+++.+.|. ......+...+.. ..+.++|..+++++.+.|
T Consensus 324 Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 324 LGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp HHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 5554443 2255666666666555331 1222233333321 235556666666655544
No 38
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.70 E-value=3.3e-15 Score=154.50 Aligned_cols=377 Identities=12% Similarity=0.040 Sum_probs=224.6
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHHcCCh---hHHHHHHHHHHhCCCCCCcccHHHHHHHHHhc
Q 004352 293 MCGLCKNSKVVEAEYYLHKMVNEGLEPDGFSYNAVIDGYCKAGMI---SSADKILNDAIFKGFVPDEFTYCSLINGLCQD 369 (759)
Q Consensus 293 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 369 (759)
...+.+.|++++|..+|++..+.| +...+..+...|...|+. ++|...|++.... ++..+..+...+...
T Consensus 10 a~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~ 82 (452)
T 3e4b_A 10 ANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAK 82 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHTC
T ss_pred HHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhC
Confidence 344445555666666665555543 222233333444445555 5666666665533 344444555534333
Q ss_pred C-----CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 004352 370 G-----DVDRAMAVYVKALEKGLKPSIVLYNTLIKGLSQQGLI---LQALQLMNEMSESGCCPDMWTYNIVINGLCKMGC 441 (759)
Q Consensus 370 ~-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 441 (759)
+ +.++|...|++..+.|.. ..+..|...|...+.. .++.+.+......| +......+...|...+.
T Consensus 83 ~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~ 156 (452)
T 3e4b_A 83 PGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGT 156 (452)
T ss_dssp --CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTC
T ss_pred CCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCC
Confidence 3 566666666666665422 2455555555544332 23444555544443 33445556666666664
Q ss_pred hHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHHH
Q 004352 442 VSDANNLVNDAISKGYIPDIFTFNTLIDGYCKQL---KMEIAIEILNTMWSHGVTPDVITYNSLLNGLCKA----AKSED 514 (759)
Q Consensus 442 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~ 514 (759)
++++......+.+.-...++..+..+...|...| +.++|++.|++..+.| +++...+..+...|... +++++
T Consensus 157 ~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~ 235 (452)
T 3e4b_A 157 YDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKT 235 (452)
T ss_dssp GGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHH
T ss_pred cccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHH
Confidence 4444333222222111224447778888888888 8888999998888876 34555556677777554 68899
Q ss_pred HHHHHHHHHHcCCCCChhcHHHHHHH-H--HhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccC-----ChhhHH
Q 004352 515 VMETFKTMIEKRCVPNIITYSILGES-L--CKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSG-----DLDGAY 586 (759)
Q Consensus 515 a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~ 586 (759)
|+..|++.. . -+...+..++.. + ...+++++|..+|++..+.| +...+..+..+|. .| ++++|+
T Consensus 236 A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~ 307 (452)
T 3e4b_A 236 AQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAE 307 (452)
T ss_dssp HHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHH
T ss_pred HHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHH
Confidence 999999887 3 356677777776 4 46789999999999998876 6677778887777 55 899999
Q ss_pred HHHHHHHHccCCCCchhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh----cCChHHHHH
Q 004352 587 QLFRRMEDQYKISHTTATYNIMINAFSE----KLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCK----TGGINSGYC 658 (759)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~ 658 (759)
..|++.. +.++..+..++.+|.. ..++++|..+|++..+.| ++.....|+..|.. ..+.++|..
T Consensus 308 ~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~ 379 (452)
T 3e4b_A 308 AHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYV 379 (452)
T ss_dssp HHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHH
T ss_pred HHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHH
Confidence 9999887 4577888999988887 449999999999998765 34566777777764 468999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 004352 659 LLLENIDKGFIPSLSTIGRVINCLCVDHRVHEAVGFVHLMVQ 700 (759)
Q Consensus 659 ~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 700 (759)
+|+++.+.|. |+.......+......++..+|..+.++-..
T Consensus 380 ~~~~A~~~g~-~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 380 FSQLAKAQDT-PEANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHHHTTCC-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCC-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 9999998652 1212111222222334566777777766544
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.70 E-value=2.6e-15 Score=143.66 Aligned_cols=224 Identities=12% Similarity=0.100 Sum_probs=192.5
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CC----hhcH
Q 004352 461 IFTFNTLIDGYCKQLKMEIAIEILNTMWSHGVTPDVITYNSLLNGLCKAAKSEDVMETFKTMIEKRCV--PN----IITY 534 (759)
Q Consensus 461 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~ 534 (759)
...+..+...+...|++++|...|+++.+.. .+...+..+..++...|++++|+..++++.+.... ++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4567788889999999999999999999876 67889999999999999999999999998875311 12 4788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHh
Q 004352 535 SILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSE 614 (759)
Q Consensus 535 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 614 (759)
..++..+...|++++|...++++.+. .|+. ..+...|++++|...++++... .|.+...+..++.++..
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHH
Confidence 89999999999999999999999985 3443 3466678899999999999987 78888999999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCcHHHHHH
Q 004352 615 KLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPS-LSTIGRVINCLCVDHRVHEAVG 693 (759)
Q Consensus 615 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~ 693 (759)
.|++++|+..++++.+.. +.+..+|..++.++...|++++|+..++++++ ..|+ ...+..+...+...|++++|.+
T Consensus 152 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~g~~~~A~~ 228 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIE--KDPNFVRAYIRKATAQIAVKEYASALE 228 (258)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 999999999999999763 44588899999999999999999999999998 6676 5556667777789999999999
Q ss_pred HHHHHHH
Q 004352 694 FVHLMVQ 700 (759)
Q Consensus 694 ~~~~~~~ 700 (759)
.++++.+
T Consensus 229 ~~~~a~~ 235 (258)
T 3uq3_A 229 TLDAART 235 (258)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999887
No 40
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.69 E-value=2.5e-15 Score=138.62 Aligned_cols=201 Identities=11% Similarity=0.003 Sum_probs=142.0
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHH
Q 004352 458 IPDIFTFNTLIDGYCKQLKMEIAIEILNTMWSHGVTPDVITYNSLLNGLCKAAKSEDVMETFKTMIEKRCVPNIITYSIL 537 (759)
Q Consensus 458 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 537 (759)
+++...+..+...+.+.|++++|...|++.++.. +.+...+..+..++.+.|++++|+..|++.++.. +.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 4456666777777777777777777777777653 2356677777777777777777877777777764 3355677777
Q ss_pred HHHHHhc-----------CCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHH
Q 004352 538 GESLCKA-----------HKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYN 606 (759)
Q Consensus 538 ~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 606 (759)
+.++... |++++|+..+++.++. .|.+...+..+..+|...|++++|+..|+++.+. . +++..+.
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~-~~~~~~~ 155 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV-NPRYAPLHLQRGLVYALLGERDKAEASLKQALAL--E-DTPEIRS 155 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C-CCHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--c-cchHHHH
Confidence 7777777 8888888888888876 3456778888888888899999999999988887 4 6788888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004352 607 IMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCLLLENID 665 (759)
Q Consensus 607 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 665 (759)
.++.+|...|++++|+..|+++++.. |.+...+..++.++...|++++|+..+++...
T Consensus 156 ~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 156 ALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC----------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 88889999999999999999888753 33477888888888889999999888887653
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.69 E-value=7.5e-15 Score=141.71 Aligned_cols=238 Identities=12% Similarity=0.078 Sum_probs=118.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHh
Q 004352 431 IVINGLCKMGCVSDANNLVNDAISKGYIPDIFTFNTLIDGYCKQLKMEIAIEILNTMWSHGVTPD--VITYNSLLNGLCK 508 (759)
Q Consensus 431 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~ 508 (759)
.....+...|++++|...++.+.+.. +.+...+..+...|...|++++|+..++++.+....|+ ...|..+..++..
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~ 86 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMK 86 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 34444555555555555555555442 22333455555555555555555555555554221111 2234555555555
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHH
Q 004352 509 AAKSEDVMETFKTMIEKRCVPNIITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQL 588 (759)
Q Consensus 509 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 588 (759)
.|++++|+..|++..+.. +.+..++..++..+...|++++|...++++.+. .+.+...+..+...+...+++++|+..
T Consensus 87 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 87 KGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-TTTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-SCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-CCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555542 223445555555555555555555555555544 233444444444222223455555555
Q ss_pred HHHHHHccCCCCchhhHHHHHHHHHhcCC---HHHHHHHHHHHHHcC-CCCC------HhhHHHHHHHHHhcCChHHHHH
Q 004352 589 FRRMEDQYKISHTTATYNIMINAFSEKLN---FYMAEKLFYEMSEKG-CPPD------NYTYRIMIDSFCKTGGINSGYC 658 (759)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~p~------~~~~~~l~~~~~~~g~~~~A~~ 658 (759)
|+++.+. .|.+...+..++.++...|+ +++|+..++++.+.. -.|+ ..+|..++..|...|++++|+.
T Consensus 165 ~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 242 (272)
T 3u4t_A 165 FVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADA 242 (272)
T ss_dssp HHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 5555555 45555555555555555555 555555555554321 0122 1344555555555555555655
Q ss_pred HHHHHHhCCCCCCHHHH
Q 004352 659 LLLENIDKGFIPSLSTI 675 (759)
Q Consensus 659 ~~~~~~~~g~~p~~~~~ 675 (759)
+++++++ +.|++...
T Consensus 243 ~~~~al~--~~p~~~~a 257 (272)
T 3u4t_A 243 AWKNILA--LDPTNKKA 257 (272)
T ss_dssp HHHHHHH--HCTTCHHH
T ss_pred HHHHHHh--cCccHHHH
Confidence 5555555 55554433
No 42
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.68 E-value=4e-15 Score=143.59 Aligned_cols=236 Identities=14% Similarity=0.062 Sum_probs=173.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh----cHHHH
Q 004352 462 FTFNTLIDGYCKQLKMEIAIEILNTMWSHGVTPDVITYNSLLNGLCKAAKSEDVMETFKTMIEKRCVPNII----TYSIL 537 (759)
Q Consensus 462 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l 537 (759)
..+......+...|++++|+..|+++.+... .+...+..+..++...|++++|+..++++.+.. ++.. .+..+
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~l 80 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV--NATKAKSADFEYY 80 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS--CTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc--CchhHHHHHHHHH
Confidence 3455666777888888888888888887642 245577778888888888888888888888742 3333 37788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCC
Q 004352 538 GESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLN 617 (759)
Q Consensus 538 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 617 (759)
+..+...|++++|...++++.+. .+.+..++..++.+|...|++++|+..|+++.+. .|.+...+..++..+...++
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~ 157 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDR-DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKE 157 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcccHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHH
Confidence 88888888888888888888875 3446677888888888888888888888888877 77788888888834444458
Q ss_pred HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC---hHHHHHHHHHHHhC-CCCCCH------HHHHHHHHHHHhcCc
Q 004352 618 FYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGG---INSGYCLLLENIDK-GFIPSL------STIGRVINCLCVDHR 687 (759)
Q Consensus 618 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~-g~~p~~------~~~~~l~~~~~~~g~ 687 (759)
+++|+..++++.+.. +.+...+..++.++...|+ +++|+..++++++. .-.|+. ..+..+...+...|+
T Consensus 158 ~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 236 (272)
T 3u4t_A 158 YVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRD 236 (272)
T ss_dssp HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCC
Confidence 888888888888653 3336777778888888887 77888888888762 111331 344455666677888
Q ss_pred HHHHHHHHHHHHHCCCCCc
Q 004352 688 VHEAVGFVHLMVQKGIVPE 706 (759)
Q Consensus 688 ~~~A~~~~~~~~~~~~~p~ 706 (759)
+++|.++++++.+ +.|+
T Consensus 237 ~~~A~~~~~~al~--~~p~ 253 (272)
T 3u4t_A 237 KVKADAAWKNILA--LDPT 253 (272)
T ss_dssp HHHHHHHHHHHHH--HCTT
T ss_pred HHHHHHHHHHHHh--cCcc
Confidence 8888888888877 4555
No 43
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.68 E-value=6.4e-15 Score=147.04 Aligned_cols=195 Identities=11% Similarity=0.025 Sum_probs=100.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCChhcHHHHHHH
Q 004352 462 FTFNTLIDGYCKQLKMEIAIEILNTMWSHGVTPDVITYNSLLNGLCKAAK-SEDVMETFKTMIEKRCVPNIITYSILGES 540 (759)
Q Consensus 462 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 540 (759)
..|..+...+...|++++|+..+++++.... -+...|+.+..++...|+ +++|+..|+++++.+ +-+...|..++.+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 3444455555555555555555555555421 134455555555555554 555555555555543 2244455555555
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHh-cCCHH
Q 004352 541 LCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSE-KLNFY 619 (759)
Q Consensus 541 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~ 619 (759)
+...|++++|+..|+++++. -+.+...|..+..++...|++++|+..|+++++. .|.+..+|+.++.++.. .|..+
T Consensus 176 ~~~~g~~~eAl~~~~kal~l-dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQ-DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHccCHHHHHHHHHHHHHh-CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcch
Confidence 55555555555555555554 2334455555555555555555555555555555 55555555555555555 33334
Q ss_pred HH-----HHHHHHHHHcCCCCC-HhhHHHHHHHHHhcC--ChHHHHHHHHHH
Q 004352 620 MA-----EKLFYEMSEKGCPPD-NYTYRIMIDSFCKTG--GINSGYCLLLEN 663 (759)
Q Consensus 620 ~A-----~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g--~~~~A~~~~~~~ 663 (759)
+| +..|+++++. .|+ ...|..++.++...| ++++|+..+.++
T Consensus 253 eA~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~ 302 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL 302 (382)
T ss_dssp HHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHh
Confidence 44 3555555543 232 445555555555544 355555555554
No 44
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.67 E-value=2e-14 Score=143.40 Aligned_cols=241 Identities=10% Similarity=0.045 Sum_probs=196.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004352 427 WTYNIVINGLCKMGCVSDANNLVNDAISKGYIPDIFTFNTLIDGYCKQLK-MEIAIEILNTMWSHGVTPDVITYNSLLNG 505 (759)
Q Consensus 427 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 505 (759)
..+..+...+...|++++|+..+++++... +.+...|+.+..++...|+ +++|+..|++++.... -+...|..+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHH
Confidence 456666677778888888888888888764 4467788888888888886 9999999998888643 367888888999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHc-cCChhh
Q 004352 506 LCKAAKSEDVMETFKTMIEKRCVPNIITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCN-SGDLDG 584 (759)
Q Consensus 506 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~ 584 (759)
+...|++++|+..|+++++.+ +-+...|..++.++...|++++|+..++++++. .+.+...|+.+..++.. .|..++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l-~P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE-DVRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCcchH
Confidence 999999999999999998875 336778889999999999999999999999987 35578888999888888 666588
Q ss_pred H-----HHHHHHHHHccCCCCchhhHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC------
Q 004352 585 A-----YQLFRRMEDQYKISHTTATYNIMINAFSEKL--NFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTG------ 651 (759)
Q Consensus 585 A-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g------ 651 (759)
| +..|++++.. .|.+..+|+.++.++...| ++++|++.++++ +. -+.+...+..++.+|...|
T Consensus 254 A~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccc
Confidence 8 5889999988 8999999999999999988 689999999988 33 2344788899999998874
Q ss_pred --C-hHHHHHHHHHH-HhCCCCCCHHHHHH
Q 004352 652 --G-INSGYCLLLEN-IDKGFIPSLSTIGR 677 (759)
Q Consensus 652 --~-~~~A~~~~~~~-~~~g~~p~~~~~~~ 677 (759)
+ +++|+.+++++ ++ ++|....++.
T Consensus 330 ~~~~~~~A~~~~~~l~~~--~DP~r~~~w~ 357 (382)
T 2h6f_A 330 KEDILNKALELCEILAKE--KDTIRKEYWR 357 (382)
T ss_dssp HHHHHHHHHHHHHHHHHT--TCGGGHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH--hCchhHHHHH
Confidence 3 58999999999 88 8897655543
No 45
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.66 E-value=2.8e-12 Score=136.66 Aligned_cols=474 Identities=12% Similarity=0.080 Sum_probs=264.4
Q ss_pred hhhHHHHHhhchhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC---hhHHHHH
Q 004352 162 PHVALRLLKNMPSQGFEPNAVAYCTLIAGFYEENHNVEAYELFDEMLGMGISPDIATFNKLIHTLCKKGN---VRESEKL 238 (759)
Q Consensus 162 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~ 238 (759)
..+.+..|+..+..+ +-|..+|..++..+.+.+.++.+..+|++++.. .+.....|...+..-.+.|+ ++.+..+
T Consensus 48 ~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp CSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 444555556555555 567777888877777777777777778777765 23345556666666666677 7777777
Q ss_pred HHHHhhCC-CCCCHHHHHHHHHHHHhcCCH--------HHHHHHHHHHhh-CCC-CCC-cchHHHHHHHHHh--------
Q 004352 239 FNKVLKRG-VSPNLFTFNMFIQGLCRKGAI--------SEAISLLDSLGR-EDL-TPD-VVTYNTLMCGLCK-------- 298 (759)
Q Consensus 239 ~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~--------~~a~~~~~~~~~-~~~-~~~-~~~~~~l~~~~~~-------- 298 (759)
|++.+... ..|++..|...+....+.++. +.+.++|+.... .|. .++ ...|...+.....
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 77777653 136777777766665554443 223355555432 233 232 3455555544322
Q ss_pred -CCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHH
Q 004352 299 -NSKVVEAEYYLHKMVNEGLEPDGFSYNAVIDGYCKAGMISSADKILNDAIFKGFVPDEFTYCSLINGLCQDGDVDRAMA 377 (759)
Q Consensus 299 -~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 377 (759)
.++++.+..+|++.+.. +.. . +..+-..|.. ++. -. +..+...++.- ...+++.|..
T Consensus 206 eq~~~~~~R~iy~raL~i--P~~-~-~~~~w~~Y~~---fe~-------~~------~~~~a~~~~~e--~~~~y~~Ar~ 263 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLCQ--PMD-C-LESMWQRYTQ---WEQ-------DV------NQLTARRHIGE--LSAQYMNARS 263 (679)
T ss_dssp HHHHHHHHHHHHHHHTTS--CCS-S-HHHHHHHHHH---HHH-------HH------CTTTHHHHHHH--HHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhC--ccH-H-HHHHHHHHHH---HHH-------hc------CcchHHHHHHH--hhHHHHHHHH
Confidence 12334455555555421 111 0 1111111100 000 00 00000011100 0112333333
Q ss_pred HHHHHHHc--CCC---CCH-HhHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-------ChH
Q 004352 378 VYVKALEK--GLK---PSI-VLYNTLIKGLSQQG-LILQALQLMNEMSESGCCPDMWTYNIVINGLCKMG-------CVS 443 (759)
Q Consensus 378 ~~~~~~~~--~~~---~~~-~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~ 443 (759)
.+.++... ++. |.. ...+ ....-..+ .....+ ..|...+.---..+ ..+
T Consensus 264 ~~~e~~~~~~~l~r~~p~~~~~~~--~~~~p~~~~~~~~ql---------------~lW~~yi~fEk~~~~~l~~~~~~~ 326 (679)
T 4e6h_A 264 LYQDWLNITKGLKRNLPITLNQAT--ESNLPKPNEYDVQQL---------------LIWLEWIRWESDNKLELSDDLHKA 326 (679)
T ss_dssp HHHHHHHHTTTCCCCCCSSSTTCC--TTTSCCTTCCCHHHH---------------HHHHHHHHHHHTCTTCCCHHHHHH
T ss_pred HHHHHHHHHHhHhhccccccccch--hccCCCCchhHHHHH---------------HHHHHHHHHHHhCCccccchhhHH
Confidence 33332211 000 000 0000 00000000 000001 12222222111111 122
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004352 444 DANNLVNDAISKGYIPDIFTFNTLIDGYCKQLKMEIAI-EILNTMWSHGVTPDVITYNSLLNGLCKAAKSEDVMETFKTM 522 (759)
Q Consensus 444 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 522 (759)
.+..+|++++... +.....|...+..+...|+.++|. .+|++.... .+.+...|...+......|+++.|.++|+.+
T Consensus 327 Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~ 404 (679)
T 4e6h_A 327 RMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSC 404 (679)
T ss_dssp HHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3455666666542 446677777777777777777775 888877764 3345666667777777778888888888877
Q ss_pred HHcCC---------CCC------------hhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHcc-C
Q 004352 523 IEKRC---------VPN------------IITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNS-G 580 (759)
Q Consensus 523 ~~~~~---------~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g 580 (759)
++... .|+ ...|...+....+.|..+.|..+|.++++.........|...+..-.+. +
T Consensus 405 l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~ 484 (679)
T 4e6h_A 405 IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISK 484 (679)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTS
T ss_pred HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCC
Confidence 75310 121 2356777777778888999999999998751122344555444444444 4
Q ss_pred ChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHhhHHHHHHHHHhcCChHHHHH
Q 004352 581 DLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPP--DNYTYRIMIDSFCKTGGINSGYC 658 (759)
Q Consensus 581 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~ 658 (759)
+.+.|.++|+...+. .|.++..|...+......|+.+.|..+|+++++...++ ....|..++..-...|+.+.+..
T Consensus 485 d~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~ 562 (679)
T 4e6h_A 485 DTKTACKVLELGLKY--FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRT 562 (679)
T ss_dssp CCHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHH
T ss_pred CHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 589999999999988 77788888888888888899999999999998763212 24678888888888899999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHH
Q 004352 659 LLLENIDKGFIPSLSTIGRVINCL 682 (759)
Q Consensus 659 ~~~~~~~~g~~p~~~~~~~l~~~~ 682 (759)
+.+++.+ ..|+......+...|
T Consensus 563 v~~R~~~--~~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 563 LEKRFFE--KFPEVNKLEEFTNKY 584 (679)
T ss_dssp HHHHHHH--HSTTCCHHHHHHHHT
T ss_pred HHHHHHH--hCCCCcHHHHHHHHh
Confidence 9999998 778766666665555
No 46
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.66 E-value=2e-13 Score=131.61 Aligned_cols=223 Identities=8% Similarity=-0.013 Sum_probs=141.9
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhcHH
Q 004352 460 DIFTFNTLIDGYCKQLKMEIAIEILNTMWSHGVTPDVITYNSLLNGLCK----AAKSEDVMETFKTMIEKRCVPNIITYS 535 (759)
Q Consensus 460 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 535 (759)
++.++..+...|...|++++|...|++..+. .+...+..+...|.. .+++++|+..|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4455555666666666666666666666652 244556666666666 666666666666666654 455666
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHc----cCChhhHHHHHHHHHHccCCCCchhhHHH
Q 004352 536 ILGESLCK----AHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCN----SGDLDGAYQLFRRMEDQYKISHTTATYNI 607 (759)
Q Consensus 536 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 607 (759)
.++..|.. .+++++|...+++..+.+ +...+..+..+|.. .+++++|+..|+++.+.. +...+..
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~----~~~a~~~ 151 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN----DGDGCTI 151 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT----CHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC----cHHHHHH
Confidence 66666666 667777777777666653 55566666666666 677777777777766651 4456666
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004352 608 MINAFSE----KLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCK----TGGINSGYCLLLENIDKGFIPSLSTIGRVI 679 (759)
Q Consensus 608 l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 679 (759)
++.+|.. .+++++|+..|+++.+.+ +...+..++.+|.. .+++++|+.+++++++ ..| ...+..+.
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~--~~~-~~a~~~l~ 225 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACE--LEN-GGGCFNLG 225 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHH--TTC-HHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHh--CCC-HHHHHHHH
Confidence 6666666 667777777777766542 34566666666666 6777777777777776 333 34445555
Q ss_pred HHHHh----cCcHHHHHHHHHHHHHC
Q 004352 680 NCLCV----DHRVHEAVGFVHLMVQK 701 (759)
Q Consensus 680 ~~~~~----~g~~~~A~~~~~~~~~~ 701 (759)
..+.. .+++++|.++++++.+.
T Consensus 226 ~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 226 AMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 55555 66777777777776663
No 47
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.66 E-value=3.7e-14 Score=134.96 Aligned_cols=206 Identities=12% Similarity=0.038 Sum_probs=105.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHH
Q 004352 462 FTFNTLIDGYCKQLKMEIAIEILNTMWSHGVTPDVITYNSLLNGLCKAAKSEDVMETFKTMIEKRCVPNIITYSILGESL 541 (759)
Q Consensus 462 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 541 (759)
..+..+...+...|++++|...|+++.+.. +.+...+..+..++...|++++|.+.++++.+.. +.+...+..++..+
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 334444555555555555555555555432 2234455555555555555555555555555442 22344455555555
Q ss_pred HhcCCHHHHHHHHHHHHHCC-CCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHH
Q 004352 542 CKAHKITEAFNLLEEMENKG-LTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYM 620 (759)
Q Consensus 542 ~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 620 (759)
...|++++|..+++++.+.+ .+.+...+..++.+|...|++++|...|+++... .|.+...+..++.++...|++++
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--NRNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHH
Confidence 55555555555555555411 1223444555555555555555555555555554 44455555555555555555555
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH
Q 004352 621 AEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSLST 674 (759)
Q Consensus 621 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 674 (759)
|...++++.+.. +.+...+..++..+...|++++|..+++++++ ..|+...
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~ 244 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR--LYPGSLE 244 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTSHH
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH--HCCCCHH
Confidence 555555555331 22344455555555555555555555555555 4444433
No 48
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.65 E-value=8.5e-15 Score=138.59 Aligned_cols=210 Identities=14% Similarity=0.057 Sum_probs=125.0
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHH
Q 004352 460 DIFTFNTLIDGYCKQLKMEIAIEILNTMWSHGVTPDVITYNSLLNGLCKAAKSEDVMETFKTMIEKRCVPNIITYSILGE 539 (759)
Q Consensus 460 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 539 (759)
....+..+...+...|++++|...|+++.+.. +.+...+..+..++...|++++|+..++++.+.. +.+...+..++.
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 34455556666666777777777777766643 2356666666667777777777777777766653 234556666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHH
Q 004352 540 SLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFY 619 (759)
Q Consensus 540 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 619 (759)
.+...|++++|...++++.+. .+.+...+..++.++...|++++|+..++++... .|.+...+..++.++...|+++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRA-GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHhccHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHH
Confidence 677777777777777776664 2445566666677777777777777777777666 5666667777777777777777
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 004352 620 MAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSLSTIGR 677 (759)
Q Consensus 620 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ 677 (759)
+|+..++++.+.. +.+..++..++.+|...|++++|+.+++++++ +.|++.....
T Consensus 177 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~ 231 (243)
T 2q7f_A 177 EALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAID--IQPDHMLALH 231 (243)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH--HCTTCHHHHH
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc--cCcchHHHHH
Confidence 7777777766542 33466666777777777777777777777776 5565544433
No 49
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.65 E-value=3.6e-13 Score=129.74 Aligned_cols=229 Identities=10% Similarity=-0.023 Sum_probs=175.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004352 425 DMWTYNIVINGLCKMGCVSDANNLVNDAISKGYIPDIFTFNTLIDGYCK----QLKMEIAIEILNTMWSHGVTPDVITYN 500 (759)
Q Consensus 425 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~ 500 (759)
+..++..+...+...|++++|...|++..+. .+...+..+...|.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4455666666677777777777777777663 245566667777777 778888888888777764 666777
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCccHHHHHHH
Q 004352 501 SLLNGLCK----AAKSEDVMETFKTMIEKRCVPNIITYSILGESLCK----AHKITEAFNLLEEMENKGLTLDTVAFGTL 572 (759)
Q Consensus 501 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 572 (759)
.+...|.. .+++++|+..|++..+.+ +...+..++..|.. .+++++|...+++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 77777777 788888888888887764 56777778888887 888888888888888764 55667777
Q ss_pred HHHHHc----cCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 004352 573 INGFCN----SGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSE----KLNFYMAEKLFYEMSEKGCPPDNYTYRIMI 644 (759)
Q Consensus 573 ~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 644 (759)
..+|.. .+++++|+..|++..+. .++..+..++.+|.. .+++++|+..++++.+.+ | ...+..++
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~-~~a~~~l~ 225 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--N-GGGCFNLG 225 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--C-HHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC--C-HHHHHHHH
Confidence 777877 88899999999888876 246778888888888 889999999999988763 2 66778888
Q ss_pred HHHHh----cCChHHHHHHHHHHHhCCCCCCHHH
Q 004352 645 DSFCK----TGGINSGYCLLLENIDKGFIPSLST 674 (759)
Q Consensus 645 ~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~ 674 (759)
.+|.. .+++++|+.+++++++ ..|+...
T Consensus 226 ~~~~~g~~~~~~~~~A~~~~~~a~~--~~~~~a~ 257 (273)
T 1ouv_A 226 AMQYNGEGVTRNEKQAIENFKKGCK--LGAKGAC 257 (273)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHH--HTCHHHH
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHH--cCCHHHH
Confidence 88888 8999999999999988 5565443
No 50
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.64 E-value=6.8e-14 Score=130.49 Aligned_cols=199 Identities=9% Similarity=0.002 Sum_probs=86.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHH
Q 004352 462 FTFNTLIDGYCKQLKMEIAIEILNTMWSHGVTPDVITYNSLLNGLCKAAKSEDVMETFKTMIEKRCVPNIITYSILGESL 541 (759)
Q Consensus 462 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 541 (759)
..+..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|.+.++++.+.. +.+..++..++..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 334444444444445555544444444432 1233444444444444444444444444444432 12333444444444
Q ss_pred Hhc-CCHHHHHHHHHHHHHCC-CCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHH
Q 004352 542 CKA-HKITEAFNLLEEMENKG-LTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFY 619 (759)
Q Consensus 542 ~~~-~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 619 (759)
... |++++|...++++.+.+ .+.+...+..++.++...|++++|+..++++.+. .|.+...+..++.++...|+++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHH
T ss_pred HHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHH
Confidence 444 44444444444444311 1112333444444444444444444444444444 3444444444444444444444
Q ss_pred HHHHHHHHHHHcCCC-CCHhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004352 620 MAEKLFYEMSEKGCP-PDNYTYRIMIDSFCKTGGINSGYCLLLENID 665 (759)
Q Consensus 620 ~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 665 (759)
+|...++++.+.. + .+...+..+...+...|+.+.|..+++.+.+
T Consensus 165 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 165 DADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 4444444444331 1 2233333333444444444444444444443
No 51
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.63 E-value=2.4e-14 Score=138.35 Aligned_cols=244 Identities=9% Similarity=-0.088 Sum_probs=160.6
Q ss_pred cCChHHHHHHHHHHHHCCC---CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004352 439 MGCVSDANNLVNDAISKGY---IPDIFTFNTLIDGYCKQLKMEIAIEILNTMWSHGVTPDVITYNSLLNGLCKAAKSEDV 515 (759)
Q Consensus 439 ~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 515 (759)
.|++++|...++.+.+... +.+..++..+...|...|++++|...|+++.+.. +.+..++..+..++...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 4556667777766665421 1134556666777777777777777777777653 23566777777777777777777
Q ss_pred HHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHc
Q 004352 516 METFKTMIEKRCVPNIITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQ 595 (759)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 595 (759)
+..|+++++.. +.+...+..++.++...|++++|...++++.+.. |+..........+...|++++|...++.....
T Consensus 97 ~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 97 YEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 77777777753 3356677777777777888888888887777642 22222233334445668888888888777766
Q ss_pred cCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-----HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 004352 596 YKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPD-----NYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIP 670 (759)
Q Consensus 596 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 670 (759)
.|++...+. ++..+...++.++|+..++++.+. .|+ ..++..++.+|...|++++|+.+++++++ ..|
T Consensus 174 --~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p 246 (275)
T 1xnf_A 174 --SDKEQWGWN-IVEFYLGNISEQTLMERLKADATD--NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA--NNV 246 (275)
T ss_dssp --SCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCS--HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCC
T ss_pred --CCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcc--cccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh--CCc
Confidence 555554443 666667777778888888877643 232 46777888888888888888888888888 667
Q ss_pred CHHHHHHHHHHHHhcCcHHHHHHHH
Q 004352 671 SLSTIGRVINCLCVDHRVHEAVGFV 695 (759)
Q Consensus 671 ~~~~~~~l~~~~~~~g~~~~A~~~~ 695 (759)
++... ....+...|++++|++.+
T Consensus 247 ~~~~~--~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 247 HNFVE--HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp TTCHH--HHHHHHHHHHHHHC----
T ss_pred hhHHH--HHHHHHHHHHHHhhHHHH
Confidence 54322 234556778888877765
No 52
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.63 E-value=8.6e-14 Score=129.80 Aligned_cols=201 Identities=6% Similarity=-0.065 Sum_probs=167.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHH
Q 004352 495 DVITYNSLLNGLCKAAKSEDVMETFKTMIEKRCVPNIITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLIN 574 (759)
Q Consensus 495 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 574 (759)
+...+..+...+...|++++|++.++++.+.. +.+...+..++..+...|++++|...++++.+. .+.+...+..++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSI-KPDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh-CCCChHHHHHHHH
Confidence 56678888889999999999999999998864 345778888999999999999999999999886 3557788888999
Q ss_pred HHHcc-CChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCh
Q 004352 575 GFCNS-GDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGI 653 (759)
Q Consensus 575 ~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 653 (759)
+|... |++++|+..++++......|.+...+..++.++...|++++|+..++++.+.. +.+..++..++.++...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 99999 99999999999998833366678889999999999999999999999998763 33488888999999999999
Q ss_pred HHHHHHHHHHHhCCCCC-CHHHHHHHH-HHHHhcCcHHHHHHHHHHHHH
Q 004352 654 NSGYCLLLENIDKGFIP-SLSTIGRVI-NCLCVDHRVHEAVGFVHLMVQ 700 (759)
Q Consensus 654 ~~A~~~~~~~~~~g~~p-~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~ 700 (759)
++|..+++++++ ..| +.......+ ..+...|+.++|..+++.+..
T Consensus 164 ~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 164 GDADYYFKKYQS--RVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHH--HHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--hCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 999999999988 666 544444444 444788999999999999876
No 53
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.63 E-value=9.3e-14 Score=132.19 Aligned_cols=201 Identities=9% Similarity=-0.076 Sum_probs=170.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHH
Q 004352 496 VITYNSLLNGLCKAAKSEDVMETFKTMIEKRCVPNIITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLING 575 (759)
Q Consensus 496 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 575 (759)
...+..+...+...|++++|+..|+++.+.. +.+...+..++..+...|++++|...++++.+. .+.+...+..++.+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALAS-DSRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CcCcHHHHHHHHHH
Confidence 5667888888999999999999999998874 346778889999999999999999999999886 35577888999999
Q ss_pred HHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHH
Q 004352 576 FCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINS 655 (759)
Q Consensus 576 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 655 (759)
|...|++++|++.|+++......|.+...+..++.++...|++++|+..++++.+.. +.+..++..++.++...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999998822367788899999999999999999999999998763 3458889999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCcHHHHHHHHHHHHHC
Q 004352 656 GYCLLLENIDKGFIPSLS-TIGRVINCLCVDHRVHEAVGFVHLMVQK 701 (759)
Q Consensus 656 A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 701 (759)
|..+++++++ ..|+.. .+..+...+...|++++|.++++++.+.
T Consensus 194 A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQ--GGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHT--TSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--hCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 9999999998 666544 4455556667899999999999999873
No 54
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.62 E-value=6.7e-14 Score=125.66 Aligned_cols=172 Identities=10% Similarity=0.038 Sum_probs=115.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHH
Q 004352 495 DVITYNSLLNGLCKAAKSEDVMETFKTMIEKRCVPNIITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLIN 574 (759)
Q Consensus 495 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 574 (759)
+...|..+..+|...|++++|++.|++.++.. +-+..++..++.++...|++++|...+..+... .+.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL-DTTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CchhHHHHHHHHH
Confidence 45566666666777777777777777766653 224556666666777777777777777766654 3445556666666
Q ss_pred HHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChH
Q 004352 575 GFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGIN 654 (759)
Q Consensus 575 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 654 (759)
.+...++++.|...+.++... .|.+..++..++.+|...|++++|++.|+++++.. |.+..+|..++.+|...|+++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHH
Confidence 677777777777777777766 66667777777777777777777777777776542 333666777777777777777
Q ss_pred HHHHHHHHHHhCCCCCCHH
Q 004352 655 SGYCLLLENIDKGFIPSLS 673 (759)
Q Consensus 655 ~A~~~~~~~~~~g~~p~~~ 673 (759)
+|+..|+++++ +.|++.
T Consensus 159 ~A~~~~~~al~--~~p~~a 175 (184)
T 3vtx_A 159 EAVKYFKKALE--KEEKKA 175 (184)
T ss_dssp HHHHHHHHHHH--TTHHHH
T ss_pred HHHHHHHHHHh--CCccCH
Confidence 77777777777 666554
No 55
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.62 E-value=7.9e-15 Score=141.83 Aligned_cols=223 Identities=9% Similarity=-0.054 Sum_probs=140.2
Q ss_pred cCCChHHHHHHHHHhhhcCCCCC--CHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChh
Q 004352 16 HQKNPLTALEMFNSVKREDGFKH--TLLTYKYMIDKLGFHGNFEEMENLLLEMRMDVDDSLLEGVHIGVMRNYGRRGKVQ 93 (759)
Q Consensus 16 ~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 93 (759)
.++++++|+..|+.+....+..+ ....+..++.++...|++++|...|+.+...+|. +..++..++.+|...|+++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD--MPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHTTCHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHccCHH
Confidence 45677888888887766422111 3456677777777788888888888887777776 6777777777888888888
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHhhch
Q 004352 94 EAVDVFERMDFYNCEPTVLSYNTIMNILVEYGYFSQVHKVYMRMRNKGIVPDVYTFVIRIKSFCRTRRPHVALRLLKNMP 173 (759)
Q Consensus 94 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 173 (759)
+|+..|+++.... +.+...+..++.++...|++++|...|+++.+.. |+.......+..+...|++++|...+++..
T Consensus 95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 8888887777554 3456667777777777777777777777777643 433333333344455567777777776655
Q ss_pred hCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC---ChhhHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 004352 174 SQGFEPNAVAYCTLIAGFYEENHNVEAYELFDEMLGMGISP---DIATFNKLIHTLCKKGNVRESEKLFNKVLKR 245 (759)
Q Consensus 174 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 245 (759)
... +++...+. ++..+...++.++|++.+++........ +...+..+...+...|++++|...|++++..
T Consensus 172 ~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 172 EKS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hcC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 543 33333333 4555556666666666666665432110 1344555555555666666666666655554
No 56
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.62 E-value=3.1e-14 Score=134.73 Aligned_cols=203 Identities=11% Similarity=0.081 Sum_probs=155.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHH
Q 004352 495 DVITYNSLLNGLCKAAKSEDVMETFKTMIEKRCVPNIITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLIN 574 (759)
Q Consensus 495 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 574 (759)
....+..+...+...|++++|+..|+++.+.. +.+...+..++..+...|++++|...++++.+. .+.+...+..++.
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALEL-DSSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCcchHHHHHHHH
Confidence 45567777888889999999999999998763 446778888899999999999999999999876 3557788888999
Q ss_pred HHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChH
Q 004352 575 GFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGIN 654 (759)
Q Consensus 575 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 654 (759)
+|...|++++|...++++... .|.+...+..++.++...|++++|+..++++.+.. +.+..++..++.++...|+++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHH
Confidence 999999999999999999888 77888899999999999999999999999998763 445888889999999999999
Q ss_pred HHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCc
Q 004352 655 SGYCLLLENIDKGFIPS-LSTIGRVINCLCVDHRVHEAVGFVHLMVQKGIVPE 706 (759)
Q Consensus 655 ~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 706 (759)
+|+.+++++++ ..|+ ...+..+...+...|++++|.+.++++.+ ..|+
T Consensus 177 ~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~p~ 225 (243)
T 2q7f_A 177 EALSQFAAVTE--QDPGHADAFYNAGVTYAYKENREKALEMLDKAID--IQPD 225 (243)
T ss_dssp HHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH--HCTT
T ss_pred HHHHHHHHHHH--hCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHc--cCcc
Confidence 99999999988 5665 45556677777889999999999999887 4555
No 57
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.61 E-value=1.6e-11 Score=130.89 Aligned_cols=444 Identities=10% Similarity=0.028 Sum_probs=279.5
Q ss_pred ChHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCC---hhHH
Q 004352 19 NPLTALEMFNSVKREDGFKHTLLTYKYMIDKLGFHGNFEEMENLLLEMRMDVDDSLLEGVHIGVMRNYGRRGK---VQEA 95 (759)
Q Consensus 19 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A 95 (759)
.+.+-+..|+..+...+ .+...|..++..+.+.+.++.+..+|+++....|. ....|...+....+.|+ ++.+
T Consensus 47 ~~~d~i~~lE~~l~~np--~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~--~~~lW~~Yi~~E~~~~~~~~~~~v 122 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQP--TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPL--MANIWCMRLSLEFDKMEELDAAVI 122 (679)
T ss_dssp CCSCHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHTC--CCCHHHH
T ss_pred CCHHHHHHHHHHHHHCc--CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHhhCCcchHHHH
Confidence 45667777787777654 48899999999999999999999999999999998 88899999999889998 9999
Q ss_pred HHHHHHhhhCC-CCCCHHHHHHHHHHHHHcCCh--------hHHHHHHHHHHHC-CC-CC-CHHHHHHHHHHHHc-----
Q 004352 96 VDVFERMDFYN-CEPTVLSYNTIMNILVEYGYF--------SQVHKVYMRMRNK-GI-VP-DVYTFVIRIKSFCR----- 158 (759)
Q Consensus 96 ~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~--------~~a~~~~~~~~~~-~~-~~-~~~~~~~l~~~~~~----- 158 (759)
..+|++..... .+|++..|...+....+.++. +.+.++|+..+.. |. .+ +...|...+.....
T Consensus 123 ~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~ 202 (679)
T 4e6h_A 123 EPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVN 202 (679)
T ss_dssp HHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCS
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccC
Confidence 99999998654 138888999888776665554 3355788887653 55 44 45678777765432
Q ss_pred ----cCChhhHHHHHhhchhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhH
Q 004352 159 ----TRRPHVALRLLKNMPSQGFEPNAVAYCTLIAGFYEENHNVEAYELFDEMLGMGISPDIATFNKLIHTLCKKGNVRE 234 (759)
Q Consensus 159 ----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 234 (759)
.++.+.++.+|+.+.......-..+|......-...+ ...+..++.+. ..+++.
T Consensus 203 ~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~-~~~a~~~~~e~---------------------~~~y~~ 260 (679)
T 4e6h_A 203 KFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVN-QLTARRHIGEL---------------------SAQYMN 260 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHC-TTTHHHHHHHH---------------------HHHHHH
T ss_pred cHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcC-cchHHHHHHHh---------------------hHHHHH
Confidence 3456778889988875321112233433222111111 11111111111 011222
Q ss_pred HHHHHHHHhhC--CC----C-----------C-----C---HHHHHHHHHHHHhcC-------CHHHHHHHHHHHhhCCC
Q 004352 235 SEKLFNKVLKR--GV----S-----------P-----N---LFTFNMFIQGLCRKG-------AISEAISLLDSLGREDL 282 (759)
Q Consensus 235 a~~~~~~~~~~--~~----~-----------~-----~---~~~~~~l~~~~~~~g-------~~~~a~~~~~~~~~~~~ 282 (759)
|...+.++... ++ + | + ...|...+..--..+ ..+.+..+|++.....
T Consensus 261 Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~- 339 (679)
T 4e6h_A 261 ARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV- 339 (679)
T ss_dssp HHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-
Confidence 22222221100 00 0 0 0 123444444332222 1234455666665442
Q ss_pred CCCcchHHHHHHHHHhCCChHHHH-HHHHHHHHCCCCCChhcHHHHHHHHHHcCChhHHHHHHHHHHhCC---------C
Q 004352 283 TPDVVTYNTLMCGLCKNSKVVEAE-YYLHKMVNEGLEPDGFSYNAVIDGYCKAGMISSADKILNDAIFKG---------F 352 (759)
Q Consensus 283 ~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---------~ 352 (759)
+.+...|...+..+...|+.++|. .+|++.... .+.+...|...+....+.|+++.|.++|+.++... .
T Consensus 340 p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~ 418 (679)
T 4e6h_A 340 CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMED 418 (679)
T ss_dssp TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 445666777777777777777775 777777764 33344455666677777778888888877776531 0
Q ss_pred CC------------CcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc-CCHHHHHHHHHHHHh
Q 004352 353 VP------------DEFTYCSLINGLCQDGDVDRAMAVYVKALEKGLKPSIVLYNTLIKGLSQQ-GLILQALQLMNEMSE 419 (759)
Q Consensus 353 ~~------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~ 419 (759)
.| ...+|...+....+.|+.+.|+.+|..+++..+......|...+..-.+. ++.+.|..+|+...+
T Consensus 419 ~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk 498 (679)
T 4e6h_A 419 DPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLK 498 (679)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHH
T ss_pred cCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 12 12357777777777888888888888887751122333443333333333 447888888888877
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004352 420 SGCCPDMWTYNIVINGLCKMGCVSDANNLVNDAISKGYIP--DIFTFNTLIDGYCKQLKMEIAIEILNTMWSHG 491 (759)
Q Consensus 420 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 491 (759)
. ++.+...+...+......|+.+.|..+|+..+....++ ....|...+..-.+.|+.+.+.++.+++.+.-
T Consensus 499 ~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 499 Y-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp H-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred H-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 6 34455666677777778888889999998888764321 34567777777778899999999999888763
No 58
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.60 E-value=3.5e-15 Score=158.27 Aligned_cols=112 Identities=14% Similarity=0.186 Sum_probs=58.6
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHh---CCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHH
Q 004352 182 VAYCTLIAGFYEENHNVEAYELFDEMLG---MGISPDIATFNKLIHTLCKKGNVRESEKLFNKVLKRGVSPNLFTFNMFI 258 (759)
Q Consensus 182 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 258 (759)
.+||++|.+|++.|+.++|.++|++|.+ .|..||..|||.||.+|++.|++++|.++|++|.+.|+.||..||+++|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 3455555555555555555555544432 2445555555555555555555555555555555555555555555555
Q ss_pred HHHHhcCCH-HHHHHHHHHHhhCCCCCCcchHHHHH
Q 004352 259 QGLCRKGAI-SEAISLLDSLGREDLTPDVVTYNTLM 293 (759)
Q Consensus 259 ~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~ 293 (759)
.++++.|+. ++|.++|++|...|+.||..+|+.++
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll 243 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLL 243 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCC
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhccccc
Confidence 555555542 44555555555555555555555444
No 59
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.60 E-value=3.6e-15 Score=158.11 Aligned_cols=119 Identities=12% Similarity=0.144 Sum_probs=97.4
Q ss_pred CHHHHHHHHHHHHccCChhhHHHHHhhchh---CCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHH
Q 004352 145 DVYTFVIRIKSFCRTRRPHVALRLLKNMPS---QGFEPNAVAYCTLIAGFYEENHNVEAYELFDEMLGMGISPDIATFNK 221 (759)
Q Consensus 145 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 221 (759)
-..||+++|.+|++.|+.++|.++|+.|.+ .|+.||+.+||+||.+|++.|++++|.++|++|...|+.||..||+.
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 356788888888888888888888876553 46788888888888888888888888888888888888888888888
Q ss_pred HHHHHHhcCCh-hHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 004352 222 LIHTLCKKGNV-RESEKLFNKVLKRGVSPNLFTFNMFIQGLCR 263 (759)
Q Consensus 222 l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 263 (759)
+|.++++.|+. +.|.++|++|.+.|+.||..+|+.++....+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 88888888874 6788888888888888888888887765544
No 60
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.59 E-value=2.8e-14 Score=147.08 Aligned_cols=265 Identities=13% Similarity=0.060 Sum_probs=165.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCH----hhHHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCCCHHHHHHHH
Q 004352 433 INGLCKMGCVSDANNLVNDAISKGYIPDI----FTFNTLIDGYCKQLKMEIAIEILNTMWSH----G-VTPDVITYNSLL 503 (759)
Q Consensus 433 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~-~~~~~~~~~~l~ 503 (759)
...+...|++++|...++++.+.. +.+. .++..+...|...|++++|...++++... + .+.....+..+.
T Consensus 55 g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 133 (411)
T 4a1s_A 55 GERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLG 133 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHH
Confidence 334444455555555555444432 1111 23444455555555555555555544432 0 011234455555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc----C-CCCChhcHHHHHHHHHhcCC-----------------HHHHHHHHHHHHHC-
Q 004352 504 NGLCKAAKSEDVMETFKTMIEK----R-CVPNIITYSILGESLCKAHK-----------------ITEAFNLLEEMENK- 560 (759)
Q Consensus 504 ~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~~~~~~- 560 (759)
..|...|++++|+..+++..+. + ......++..++..+...|+ +++|...+++..+.
T Consensus 134 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~ 213 (411)
T 4a1s_A 134 NTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLM 213 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 6666666666666666665543 1 01123356666677777777 77777777766542
Q ss_pred ---CC-CccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCc----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004352 561 ---GL-TLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHT----TATYNIMINAFSEKLNFYMAEKLFYEMSEKG 632 (759)
Q Consensus 561 ---~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 632 (759)
+. +.....+..+..+|...|++++|+..++++........+ ..++..++.+|...|++++|+..++++.+..
T Consensus 214 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 293 (411)
T 4a1s_A 214 RDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALA 293 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 11 122346777888888899999999999888765211111 2377888999999999999999998877541
Q ss_pred CC-C----CHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-------HHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 004352 633 CP-P----DNYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPS-------LSTIGRVINCLCVDHRVHEAVGFVHLMVQ 700 (759)
Q Consensus 633 ~~-p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 700 (759)
-. . ...++..++.++...|++++|+.+++++++ +.++ ...+..+...+...|++++|.++++++.+
T Consensus 294 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 294 VELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLA--IAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 00 1 146788888999999999999999999886 3221 22445666677889999999999999987
No 61
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.58 E-value=2.5e-13 Score=121.93 Aligned_cols=169 Identities=10% Similarity=0.010 Sum_probs=149.6
Q ss_pred ChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHH
Q 004352 530 NIITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMI 609 (759)
Q Consensus 530 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 609 (759)
+...|..++..+...|++++|+..|+++++. .|.+..++..++.+|...|++++|+..++.+... .|.+...+..++
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA-DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 5678889999999999999999999999987 3567888999999999999999999999999988 788899999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCcH
Q 004352 610 NAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSL-STIGRVINCLCVDHRV 688 (759)
Q Consensus 610 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~ 688 (759)
..+...++++.|...++++.+.. +.+...+..++.++...|++++|+..|+++++ +.|+. ..+..+..++...|++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTIS--IKPGFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHH--hcchhhhHHHHHHHHHHHCCCH
Confidence 99999999999999999998763 44588899999999999999999999999999 77864 5566777777899999
Q ss_pred HHHHHHHHHHHHCCCCCc
Q 004352 689 HEAVGFVHLMVQKGIVPE 706 (759)
Q Consensus 689 ~~A~~~~~~~~~~~~~p~ 706 (759)
++|++.++++++ ++|+
T Consensus 158 ~~A~~~~~~al~--~~p~ 173 (184)
T 3vtx_A 158 DEAVKYFKKALE--KEEK 173 (184)
T ss_dssp HHHHHHHHHHHH--TTHH
T ss_pred HHHHHHHHHHHh--CCcc
Confidence 999999999988 6676
No 62
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.57 E-value=8.6e-14 Score=143.22 Aligned_cols=271 Identities=14% Similarity=0.074 Sum_probs=161.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHH
Q 004352 429 YNIVINGLCKMGCVSDANNLVNDAISKGYIPD----IFTFNTLIDGYCKQLKMEIAIEILNTMWSH----GVTP-DVITY 499 (759)
Q Consensus 429 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~ 499 (759)
+......+...|++++|...++++.... +.+ ..++..+...|...|++++|...++++... +-.| ...++
T Consensus 12 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 90 (406)
T 3sf4_A 12 LALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 90 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 3333444444444444444444444432 111 123444444555555555555555544321 1011 13344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----hhcHHHHHHHHHhcCC--------------------HHHHHHHH
Q 004352 500 NSLLNGLCKAAKSEDVMETFKTMIEKRC-VPN----IITYSILGESLCKAHK--------------------ITEAFNLL 554 (759)
Q Consensus 500 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~--------------------~~~a~~~~ 554 (759)
..+...+...|++++|+..+++..+... .++ ..++..++..+...|+ +++|...+
T Consensus 91 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 170 (406)
T 3sf4_A 91 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFY 170 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 5555556666666666666665554310 001 2355666666666677 77777777
Q ss_pred HHHHHC----CC-CccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCC----chhhHHHHHHHHHhcCCHHHHHHHH
Q 004352 555 EEMENK----GL-TLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISH----TTATYNIMINAFSEKLNFYMAEKLF 625 (759)
Q Consensus 555 ~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~ 625 (759)
++..+. +. +....++..+..+|...|++++|+..++++.......+ ...++..++.+|...|++++|+..+
T Consensus 171 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 250 (406)
T 3sf4_A 171 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 250 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 666542 11 11234577778888888888888888888876521111 1337788888899999999999999
Q ss_pred HHHHHcC----CCCC-HhhHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCcHHHHHHHH
Q 004352 626 YEMSEKG----CPPD-NYTYRIMIDSFCKTGGINSGYCLLLENIDK----GFIPS-LSTIGRVINCLCVDHRVHEAVGFV 695 (759)
Q Consensus 626 ~~~~~~~----~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 695 (759)
+++.+.. -.+. ..++..++.+|...|++++|+.+++++++. +-.+. ...+..+...+...|++++|..++
T Consensus 251 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 330 (406)
T 3sf4_A 251 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFA 330 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8876431 1111 457788888999999999999999988762 11111 334455666667889999999999
Q ss_pred HHHHH
Q 004352 696 HLMVQ 700 (759)
Q Consensus 696 ~~~~~ 700 (759)
+++.+
T Consensus 331 ~~al~ 335 (406)
T 3sf4_A 331 EKHLE 335 (406)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88765
No 63
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.56 E-value=1.3e-13 Score=137.80 Aligned_cols=264 Identities=15% Similarity=0.104 Sum_probs=160.1
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHH
Q 004352 434 NGLCKMGCVSDANNLVNDAISKGYIPD----IFTFNTLIDGYCKQLKMEIAIEILNTMWSH----GVT-PDVITYNSLLN 504 (759)
Q Consensus 434 ~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~ 504 (759)
..+...|++++|...++++.+.. +.+ ...+..+...|...|++++|...+++.... +.. ....++..+..
T Consensus 13 ~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 91 (338)
T 3ro2_A 13 ERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGN 91 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 33444444455554444444432 111 233444445555555555555555544321 101 11334555556
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCC-CCC----hhcHHHHHHHHHhcCC--------------------HHHHHHHHHHHHH
Q 004352 505 GLCKAAKSEDVMETFKTMIEKRC-VPN----IITYSILGESLCKAHK--------------------ITEAFNLLEEMEN 559 (759)
Q Consensus 505 ~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~~ 559 (759)
.+...|++++|...+++..+... .++ ..++..++..+...|+ +++|...+++...
T Consensus 92 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~ 171 (338)
T 3ro2_A 92 TLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLS 171 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 66666666666666666554310 011 2255566666666676 7777777766553
Q ss_pred C----CC-CccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCC----CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004352 560 K----GL-TLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKI----SHTTATYNIMINAFSEKLNFYMAEKLFYEMSE 630 (759)
Q Consensus 560 ~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 630 (759)
. +. +....++..+...|...|++++|...++++...... +....++..++.++...|++++|...++++.+
T Consensus 172 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 251 (338)
T 3ro2_A 172 LVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLL 251 (338)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 11 112345777788888888888888888887654211 11233778888889999999999999988764
Q ss_pred cC----CCCC-HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-------HHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 004352 631 KG----CPPD-NYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPS-------LSTIGRVINCLCVDHRVHEAVGFVHLM 698 (759)
Q Consensus 631 ~~----~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~ 698 (759)
.. .++. ..++..++.++...|++++|..+++++++ +.|. ...+..+...+...|++++|..+++++
T Consensus 252 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (338)
T 3ro2_A 252 LARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA--IAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 329 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 31 1111 45778888899999999999999999876 3221 224455666678889999999999998
Q ss_pred HH
Q 004352 699 VQ 700 (759)
Q Consensus 699 ~~ 700 (759)
.+
T Consensus 330 ~~ 331 (338)
T 3ro2_A 330 LE 331 (338)
T ss_dssp HH
T ss_pred HH
Confidence 76
No 64
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.55 E-value=3.8e-12 Score=124.70 Aligned_cols=221 Identities=11% Similarity=0.016 Sum_probs=140.3
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHH-------hcCCH-------HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004352 443 SDANNLVNDAISKGYIPDIFTFNTLIDGYC-------KQLKM-------EIAIEILNTMWSHGVTPDVITYNSLLNGLCK 508 (759)
Q Consensus 443 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 508 (759)
++|..+|++++... +.++..|..++..+. ..|++ ++|..+|++.+..-.+.+...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45556666665542 335556665555554 23654 6777777777762112245567777777777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC-hh-cHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHH-ccCChhhH
Q 004352 509 AAKSEDVMETFKTMIEKRCVPN-II-TYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFC-NSGDLDGA 585 (759)
Q Consensus 509 ~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A 585 (759)
.|++++|..+|+++++. .|+ .. .|..++..+.+.|++++|..+|+++++.. +.+...|...+.... ..|++++|
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 77777777777777764 333 32 56667777777777777777777777652 334444444333322 25777777
Q ss_pred HHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCC--HhhHHHHHHHHHhcCChHHHHHHHHH
Q 004352 586 YQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKG-CPPD--NYTYRIMIDSFCKTGGINSGYCLLLE 662 (759)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~ 662 (759)
..+|+++.+. .|.++..|..++..+...|++++|+.+|+++++.. ++|+ ...|..++..+...|+.++|..++++
T Consensus 189 ~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 189 FKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7777777776 56677777777777777777777777777777642 3442 45667777777777777777777777
Q ss_pred HHhCCCCCC
Q 004352 663 NIDKGFIPS 671 (759)
Q Consensus 663 ~~~~g~~p~ 671 (759)
+++ ..|+
T Consensus 267 a~~--~~p~ 273 (308)
T 2ond_A 267 RFT--AFRE 273 (308)
T ss_dssp HHH--HTTT
T ss_pred HHH--Hccc
Confidence 776 5554
No 65
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.55 E-value=1.1e-13 Score=142.64 Aligned_cols=278 Identities=13% Similarity=0.066 Sum_probs=171.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004352 360 CSLINGLCQDGDVDRAMAVYVKALEKGLKPSI----VLYNTLIKGLSQQGLILQALQLMNEMSESGCCPDMWTYNIVING 435 (759)
Q Consensus 360 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 435 (759)
..+...+...|++++|+..|+++.+..+. +. ..+..+...|...|++++|...+++.....
T Consensus 52 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------------- 116 (411)
T 4a1s_A 52 ALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLA-------------- 116 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--------------
Confidence 34445555566666666666665555332 22 244455555555555555555555543320
Q ss_pred HHhcCChHHHHHHHHHHHHCC-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHHhc
Q 004352 436 LCKMGCVSDANNLVNDAISKG-YIPDIFTFNTLIDGYCKQLKMEIAIEILNTMWSH----G-VTPDVITYNSLLNGLCKA 509 (759)
Q Consensus 436 ~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~ 509 (759)
...+ .+....++..+...|...|++++|...++++... + .+....++..+...|...
T Consensus 117 -----------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 179 (411)
T 4a1s_A 117 -----------------KSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAK 179 (411)
T ss_dssp -----------------HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred -----------------HHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHc
Confidence 0000 0112234444555555555555555555554432 0 011233555666666666
Q ss_pred CC-----------------HHHHHHHHHHHHHc----CC-CCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----
Q 004352 510 AK-----------------SEDVMETFKTMIEK----RC-VPNIITYSILGESLCKAHKITEAFNLLEEMENKGL----- 562 (759)
Q Consensus 510 ~~-----------------~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----- 562 (759)
|+ +++|++.+++..+. +. .....++..++..+...|++++|...+++..+...
T Consensus 180 g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 259 (411)
T 4a1s_A 180 GKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDR 259 (411)
T ss_dssp HHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred CcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCc
Confidence 66 67777766665442 11 11233677778888888888888888888775310
Q ss_pred CccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCC----CchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC
Q 004352 563 TLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKIS----HTTATYNIMINAFSEKLNFYMAEKLFYEMSEK----GCP 634 (759)
Q Consensus 563 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~ 634 (759)
.....++..+..+|...|++++|+..++++....... ....++..++.++...|++++|..+++++.+. +..
T Consensus 260 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 339 (411)
T 4a1s_A 260 AAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDR 339 (411)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh
Confidence 0112367788889999999999999999887652111 12567888999999999999999999988754 111
Q ss_pred CC-HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 004352 635 PD-NYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPS 671 (759)
Q Consensus 635 p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 671 (759)
+. ..++..++.+|...|++++|..+++++++ +.+.
T Consensus 340 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~~~ 375 (411)
T 4a1s_A 340 IGEARACWSLGNAHSAIGGHERALKYAEQHLQ--LAXX 375 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH--HHhh
Confidence 11 45788889999999999999999999998 5554
No 66
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.55 E-value=9.3e-14 Score=142.95 Aligned_cols=276 Identities=11% Similarity=0.063 Sum_probs=171.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004352 359 YCSLINGLCQDGDVDRAMAVYVKALEKGLKPS---IVLYNTLIKGLSQQGLILQALQLMNEMSESGCCPDMWTYNIVING 435 (759)
Q Consensus 359 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 435 (759)
+......+...|++++|...|+++....+... ...+..+...+...|++++|...+++.....
T Consensus 12 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------------- 77 (406)
T 3sf4_A 12 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA-------------- 77 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH--------------
Confidence 34455555566666666666666655533211 1344455555555555555555555543210
Q ss_pred HHhcCChHHHHHHHHHHHHCCCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHhc
Q 004352 436 LCKMGCVSDANNLVNDAISKGYI-PDIFTFNTLIDGYCKQLKMEIAIEILNTMWSHGV-----TPDVITYNSLLNGLCKA 509 (759)
Q Consensus 436 ~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~ 509 (759)
...+.. ....++..+...|...|++++|...+++...... .....++..+...|...
T Consensus 78 -----------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 140 (406)
T 3sf4_A 78 -----------------RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAK 140 (406)
T ss_dssp -----------------HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred -----------------HhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHc
Confidence 000000 0123344455555555555555555555443200 00133555666666667
Q ss_pred CC--------------------HHHHHHHHHHHHHc----CCCC-ChhcHHHHHHHHHhcCCHHHHHHHHHHHHHC----
Q 004352 510 AK--------------------SEDVMETFKTMIEK----RCVP-NIITYSILGESLCKAHKITEAFNLLEEMENK---- 560 (759)
Q Consensus 510 ~~--------------------~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 560 (759)
|+ +++|+..+++.... +..| ...++..++..+...|++++|...++++.+.
T Consensus 141 g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 220 (406)
T 3sf4_A 141 GKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 220 (406)
T ss_dssp HHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHT
T ss_pred CCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc
Confidence 77 77777777665542 1111 2336777788888888999888888887753
Q ss_pred CCC-ccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCC----chhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----
Q 004352 561 GLT-LDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISH----TTATYNIMINAFSEKLNFYMAEKLFYEMSEK---- 631 (759)
Q Consensus 561 ~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 631 (759)
+.+ ....++..++.+|...|++++|...++++.......+ ...++..++.+|...|++++|+..++++.+.
T Consensus 221 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 300 (406)
T 3sf4_A 221 GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 300 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhc
Confidence 111 1123678888899999999999999998876521111 1567888999999999999999999988753
Q ss_pred CCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004352 632 GCPPD-NYTYRIMIDSFCKTGGINSGYCLLLENID 665 (759)
Q Consensus 632 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 665 (759)
+-.+. ..++..++.+|...|++++|+.+++++++
T Consensus 301 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 301 NDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11111 56788899999999999999999999886
No 67
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.54 E-value=2.3e-13 Score=141.69 Aligned_cols=213 Identities=9% Similarity=-0.017 Sum_probs=178.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHH
Q 004352 476 KMEIAIEILNTMWSHGVTPDVITYNSLLNGLCKAAKS-EDVMETFKTMIEKRCVPNIITYSILGESLCKAHKITEAFNLL 554 (759)
Q Consensus 476 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 554 (759)
.+++++..++...... +.+...+..+..++...|++ ++|++.|++.++.. +.+...+..++.+|...|++++|...|
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3566677777666542 34678888888888999999 99999999988874 335778899999999999999999999
Q ss_pred HHHHHCCCCccHHHHHHHHHHHHcc---------CChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhc--------CC
Q 004352 555 EEMENKGLTLDTVAFGTLINGFCNS---------GDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEK--------LN 617 (759)
Q Consensus 555 ~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~ 617 (759)
+++++. .|+...+..+..+|... |++++|+..|+++.+. .|.+...|..++.+|... |+
T Consensus 161 ~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 161 SGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccch
Confidence 999885 45678888899999998 9999999999999998 888999999999999998 99
Q ss_pred HHHHHHHHHHHHHcCCCC----CHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCcHHHHH
Q 004352 618 FYMAEKLFYEMSEKGCPP----DNYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSLS-TIGRVINCLCVDHRVHEAV 692 (759)
Q Consensus 618 ~~~A~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~ 692 (759)
+++|+..|+++++. .| +...|..++.+|...|++++|+..|+++++ +.|+.. .+..+...+...|++++|+
T Consensus 237 ~~~A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~a~~~l~~~~~~lg~~~eAi 312 (474)
T 4abn_A 237 SQQALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA--LDPAWPEPQQREQQLLEFLSRLTSLL 312 (474)
T ss_dssp HHHHHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999976 45 588999999999999999999999999999 778755 4556666668889999999
Q ss_pred HHHHHH
Q 004352 693 GFVHLM 698 (759)
Q Consensus 693 ~~~~~~ 698 (759)
+.+.++
T Consensus 313 ~~~~~~ 318 (474)
T 4abn_A 313 ESKGKT 318 (474)
T ss_dssp HHTTTC
T ss_pred HHhccc
Confidence 866553
No 68
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.53 E-value=4.8e-12 Score=123.92 Aligned_cols=218 Identities=8% Similarity=-0.006 Sum_probs=163.6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------cCCH-------HHHHHHHHHHHHcCCCCChhcHHHHHHHHHh
Q 004352 478 EIAIEILNTMWSHGVTPDVITYNSLLNGLCK-------AAKS-------EDVMETFKTMIEKRCVPNIITYSILGESLCK 543 (759)
Q Consensus 478 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 543 (759)
++|..+|++++... +.++..|..++..+.. .|++ ++|..+|++.++.-.+.+...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 67888888888753 3467788888777653 4775 8899999988873112345578888888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCccHH-HHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHH-hcCCHHHH
Q 004352 544 AHKITEAFNLLEEMENKGLTLDTV-AFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFS-EKLNFYMA 621 (759)
Q Consensus 544 ~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A 621 (759)
.|++++|..+|+++++.. +.+.. +|..++..+.+.|++++|+.+|+++.+. .|++...|...+.... ..|++++|
T Consensus 112 ~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 899999999999988752 22343 7888888888889999999999998887 5666666665554433 36889999
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 004352 622 EKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCLLLENIDK-GFIPS--LSTIGRVINCLCVDHRVHEAVGFVHLM 698 (759)
Q Consensus 622 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 698 (759)
..+|+++++.. +.+...|..++..+...|++++|+.+|+++++. .+.|+ ...|..++......|+.++|..+++++
T Consensus 189 ~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999888652 334788888888888889999999999998884 23553 345555666667789999999998888
Q ss_pred HH
Q 004352 699 VQ 700 (759)
Q Consensus 699 ~~ 700 (759)
.+
T Consensus 268 ~~ 269 (308)
T 2ond_A 268 FT 269 (308)
T ss_dssp HH
T ss_pred HH
Confidence 87
No 69
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.53 E-value=9.9e-13 Score=133.71 Aligned_cols=231 Identities=9% Similarity=-0.014 Sum_probs=167.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CC-----ChhcHH
Q 004352 467 LIDGYCKQLKMEIAIEILNTMWSH----GVTP-DVITYNSLLNGLCKAAKSEDVMETFKTMIEKRC-VP-----NIITYS 535 (759)
Q Consensus 467 l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~-----~~~~~~ 535 (759)
....+...|++++|...+++..+. +-.+ ...++..+..+|...|++++|+..+++..+... .+ ...++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 455677888889998888888764 1111 245677888888889999999988888776411 11 134677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----CCC-ccHHHHHHHHHHHHccCChhhHHHHHHHHHHcc---CC-CCchhhHH
Q 004352 536 ILGESLCKAHKITEAFNLLEEMENK----GLT-LDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQY---KI-SHTTATYN 606 (759)
Q Consensus 536 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~-~~~~~~~~ 606 (759)
.++.+|...|++++|...++++.+. +.+ ....++..++.+|...|++++|+..|+++.... .. |....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8888889999999999999888753 111 112467888899999999999999999887721 13 66677888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCC---CCC-HhhHHHHHHHHHhcCC---hHHHHHHHHHHHhCCCCCCHH-HHHHH
Q 004352 607 IMINAFSEKLNFYMAEKLFYEMSEKGC---PPD-NYTYRIMIDSFCKTGG---INSGYCLLLENIDKGFIPSLS-TIGRV 678 (759)
Q Consensus 607 ~l~~~~~~~g~~~~A~~~~~~~~~~~~---~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g~~p~~~-~~~~l 678 (759)
.++.+|...|++++|...++++.+..- .|. ...+..++..+...|+ +++|+.++++. +..|+.. .+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 999999999999999999998775310 122 3345677788888888 77777777765 2334333 34456
Q ss_pred HHHHHhcCcHHHHHHHHHHHHH
Q 004352 679 INCLCVDHRVHEAVGFVHLMVQ 700 (759)
Q Consensus 679 ~~~~~~~g~~~~A~~~~~~~~~ 700 (759)
...+...|++++|..+++++.+
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 6666889999999999999875
No 70
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.52 E-value=2.7e-13 Score=135.41 Aligned_cols=276 Identities=11% Similarity=0.072 Sum_probs=166.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004352 361 SLINGLCQDGDVDRAMAVYVKALEKGLKPS----IVLYNTLIKGLSQQGLILQALQLMNEMSESGCCPDMWTYNIVINGL 436 (759)
Q Consensus 361 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 436 (759)
.....+...|++++|...|+++.+..+. + ...+..+...+...|++++|...+++.....
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------------- 73 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA--------------- 73 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh---------------
Confidence 3445555566666666666666555332 2 2344455555555566666655555543310
Q ss_pred HhcCChHHHHHHHHHHHHCCC-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcC
Q 004352 437 CKMGCVSDANNLVNDAISKGY-IPDIFTFNTLIDGYCKQLKMEIAIEILNTMWSHGV-TPD----VITYNSLLNGLCKAA 510 (759)
Q Consensus 437 ~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~ 510 (759)
...+. +....++..+...|...|++++|...+++..+... .++ ..++..+...+...|
T Consensus 74 ----------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~ 137 (338)
T 3ro2_A 74 ----------------RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKG 137 (338)
T ss_dssp ----------------HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------hcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcC
Confidence 00000 01123344445555555555555555555433200 011 224555555666666
Q ss_pred C--------------------HHHHHHHHHHHHHc----CCC-CChhcHHHHHHHHHhcCCHHHHHHHHHHHHHC----C
Q 004352 511 K--------------------SEDVMETFKTMIEK----RCV-PNIITYSILGESLCKAHKITEAFNLLEEMENK----G 561 (759)
Q Consensus 511 ~--------------------~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~ 561 (759)
+ +++|.+.+++.... +.. ....++..++..+...|++++|...++++.+. +
T Consensus 138 ~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 217 (338)
T 3ro2_A 138 KSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG 217 (338)
T ss_dssp HTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred cccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC
Confidence 6 66666666655432 111 12335667777888888888888888887653 1
Q ss_pred C-CccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCC----chhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----C
Q 004352 562 L-TLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISH----TTATYNIMINAFSEKLNFYMAEKLFYEMSEK----G 632 (759)
Q Consensus 562 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~ 632 (759)
. .....++..++.++...|++++|...++++.......+ ...++..++.++...|++++|...++++.+. +
T Consensus 218 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 297 (338)
T 3ro2_A 218 DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK 297 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Confidence 1 11233677888888999999999999988876521111 1567788899999999999999999988653 1
Q ss_pred CCCC-HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 004352 633 CPPD-NYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIP 670 (759)
Q Consensus 633 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 670 (759)
-++. ..++..++.+|...|++++|..+++++++ +.+
T Consensus 298 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~ 334 (338)
T 3ro2_A 298 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE--ISR 334 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--C--
T ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH--HHH
Confidence 1111 45788899999999999999999999998 544
No 71
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.50 E-value=2e-12 Score=120.64 Aligned_cols=151 Identities=13% Similarity=0.058 Sum_probs=72.6
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHH
Q 004352 460 DIFTFNTLIDGYCKQLKMEIAIEILNTMWSHGVTPDVITYNSLLNGLCKAAKSEDVMETFKTMIEKRCVPNIITYSILGE 539 (759)
Q Consensus 460 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 539 (759)
++..+......+...|++++|+..|++..+...+++...+..+..++...|++++|+..|++.++.. +.+...+..++.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 3444455555555555555555555555544322344444445555555555555555555555432 113334445555
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCccH-------HHHHHHHHHHHccCChhhHHHHHHHHHHccCCCC--chhhHHHHHH
Q 004352 540 SLCKAHKITEAFNLLEEMENKGLTLDT-------VAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISH--TTATYNIMIN 610 (759)
Q Consensus 540 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~l~~ 610 (759)
++...|++++|...++++++. .+.+. ..|..+...+...|++++|+..|+++.+. .|. +...+..++.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA-VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH-CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHH
Confidence 555555555555555555443 12222 23444444445555555555555555444 444 4444455554
Q ss_pred HHHh
Q 004352 611 AFSE 614 (759)
Q Consensus 611 ~~~~ 614 (759)
+|..
T Consensus 162 ~~~~ 165 (228)
T 4i17_A 162 LFYN 165 (228)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 72
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.50 E-value=2.2e-12 Score=131.13 Aligned_cols=231 Identities=8% Similarity=-0.046 Sum_probs=174.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--C----CCCHHHHH
Q 004352 432 VINGLCKMGCVSDANNLVNDAISK----GYIP-DIFTFNTLIDGYCKQLKMEIAIEILNTMWSHG--V----TPDVITYN 500 (759)
Q Consensus 432 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~----~~~~~~~~ 500 (759)
....+...|++++|...+++.... +.++ ...++..+...|...|+++.|...+++..+.. . .....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 445566788888888888887754 1111 23567778888888899988888888876531 1 11235677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----hhcHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CccHHHHH
Q 004352 501 SLLNGLCKAAKSEDVMETFKTMIEKRCV-PN----IITYSILGESLCKAHKITEAFNLLEEMENK----GL-TLDTVAFG 570 (759)
Q Consensus 501 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~ 570 (759)
.+..+|...|++++|++.|++.++.... ++ ..++..++.+|...|++++|...+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8888899999999999999888764111 11 237888999999999999999999998872 23 44567788
Q ss_pred HHHHHHHccCChhhHHHHHHHHHHccC---CCCchhhHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCC-HhhHHHH
Q 004352 571 TLINGFCNSGDLDGAYQLFRRMEDQYK---ISHTTATYNIMINAFSEKLN---FYMAEKLFYEMSEKGCPPD-NYTYRIM 643 (759)
Q Consensus 571 ~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~~~~~l 643 (759)
.++.+|...|++++|...++++..... .|.....+..++..+...|+ +.+|+.++++. +..|+ ..++..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 999999999999999999999876521 23333446778889999999 88888888876 33344 5678889
Q ss_pred HHHHHhcCChHHHHHHHHHHHh
Q 004352 644 IDSFCKTGGINSGYCLLLENID 665 (759)
Q Consensus 644 ~~~~~~~g~~~~A~~~~~~~~~ 665 (759)
+..|...|++++|..+++++++
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999999886
No 73
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.49 E-value=8.7e-13 Score=137.28 Aligned_cols=213 Identities=9% Similarity=-0.039 Sum_probs=163.8
Q ss_pred hHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004352 442 VSDANNLVNDAISKGYIPDIFTFNTLIDGYCKQLKM-EIAIEILNTMWSHGVTPDVITYNSLLNGLCKAAKSEDVMETFK 520 (759)
Q Consensus 442 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 520 (759)
++++...++...... +.+...+..+...|...|++ ++|++.|+++.+.. +.+...|..+..+|...|++++|++.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 445555555544432 34666777777777777887 88888887777653 2246777778888888888888888888
Q ss_pred HHHHcCCCCChhcHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHcc--------CChh
Q 004352 521 TMIEKRCVPNIITYSILGESLCKA---------HKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNS--------GDLD 583 (759)
Q Consensus 521 ~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~ 583 (759)
+.++. .|+...+..++.++... |++++|...++++++. .+.+...|..+..+|... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM-DVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 88775 35567777778888777 8888888888888876 355677888888888888 8899
Q ss_pred hHHHHHHHHHHccCCC---CchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHH
Q 004352 584 GAYQLFRRMEDQYKIS---HTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCLL 660 (759)
Q Consensus 584 ~A~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 660 (759)
+|+..|+++... .| .++..|..++.+|...|++++|+..|+++.+.. +.+..++..+..++...|++++|+..+
T Consensus 239 ~A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 239 QALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999887 67 788899999999999999999999999988763 334778888888899889888888765
Q ss_pred HH
Q 004352 661 LE 662 (759)
Q Consensus 661 ~~ 662 (759)
.+
T Consensus 316 ~~ 317 (474)
T 4abn_A 316 GK 317 (474)
T ss_dssp TT
T ss_pred cc
Confidence 44
No 74
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.49 E-value=5.9e-12 Score=117.38 Aligned_cols=205 Identities=11% Similarity=-0.065 Sum_probs=114.4
Q ss_pred ChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHH
Q 004352 530 NIITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMI 609 (759)
Q Consensus 530 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 609 (759)
++..+...+..+...|++++|+..|+++++...+++...+..++.++...|++++|+..|+++... .|.+..+|..++
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHH
Confidence 344555556666666666666666666665432245555555666666666666666666666665 566666666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCH-------hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHH-HHHH
Q 004352 610 NAFSEKLNFYMAEKLFYEMSEKGCPPDN-------YTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPS--LSTI-GRVI 679 (759)
Q Consensus 610 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~-~~l~ 679 (759)
.+|...|++++|+..++++++.. +.+. .+|..++..+...|++++|+..++++++ +.|+ .... ..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD--VTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SSCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh--cCCCcccHHHHHHHH
Confidence 66666666666666666666542 2223 3466666666666777777777777766 5665 3333 3333
Q ss_pred HHHHhcCcHHHHHHHHHHHHHCCC-CCchHHHHHhccccccccchHHHHHHHhcCCCchHHHHHHH
Q 004352 680 NCLCVDHRVHEAVGFVHLMVQKGI-VPEVVNTIFEADKREVASPKIVVEDLLKKSHITYYAYELLF 744 (759)
Q Consensus 680 ~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 744 (759)
..+...|+ ..++++...+. .+..+........+.+++|...++++++.+|....+..++.
T Consensus 161 ~~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~ 221 (228)
T 4i17_A 161 VLFYNNGA-----DVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQD 221 (228)
T ss_dssp HHHHHHHH-----HHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 33333332 22333333111 11122222222445567777777777777776555544443
No 75
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.46 E-value=1.5e-12 Score=128.30 Aligned_cols=237 Identities=13% Similarity=0.037 Sum_probs=118.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CC-
Q 004352 462 FTFNTLIDGYCKQLKMEIAIEILNTMWSH-------GVTPDVITYNSLLNGLCKAAKSEDVMETFKTMIEK------RC- 527 (759)
Q Consensus 462 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~- 527 (759)
.++..+...+...|++++|...++++.+. ..+.....+..+..+|...|++++|...+++.+.. +.
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34444555555555555555555555441 11122344555555555556666666555555442 11
Q ss_pred CCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHC------C-CCccHHHHHHHHHHHHccCChhhHHHHHHHHHHc-----
Q 004352 528 VPNIITYSILGESLCKAHKITEAFNLLEEMENK------G-LTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQ----- 595 (759)
Q Consensus 528 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----- 595 (759)
+....++..++..+...|++++|...++++.+. + .+.....+..++.+|...|++++|+.+|+++...
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 112334555566666666666666666665542 1 1223344566666667777777777777666554
Q ss_pred -cCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCC-Hhh------HHHHHHHHHhcCChHHHHHHH
Q 004352 596 -YKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEK-------GCPPD-NYT------YRIMIDSFCKTGGINSGYCLL 660 (759)
Q Consensus 596 -~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~p~-~~~------~~~l~~~~~~~g~~~~A~~~~ 660 (759)
...|....++..++.+|...|++++|+..++++.+. ...+. ... +..+...+...+.+.+|...+
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 267 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWY 267 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHH
Confidence 223334556666677777777777777777766642 11121 111 122222333445555556666
Q ss_pred HHHHhCCCCCCH-HHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 004352 661 LENIDKGFIPSL-STIGRVINCLCVDHRVHEAVGFVHLMVQ 700 (759)
Q Consensus 661 ~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 700 (759)
+++.. ..|+. ..+..+...+...|++++|.++++++.+
T Consensus 268 ~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 268 KACKV--DSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp --------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hhcCC--CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66655 34443 3344555555677777777777777665
No 76
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.45 E-value=2e-12 Score=127.43 Aligned_cols=238 Identities=13% Similarity=0.079 Sum_probs=171.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHC------C
Q 004352 495 DVITYNSLLNGLCKAAKSEDVMETFKTMIEK-------RCVPNIITYSILGESLCKAHKITEAFNLLEEMENK------G 561 (759)
Q Consensus 495 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~ 561 (759)
+..++..+...+...|++++|+.+++++.+. ..+.....+..++..+...|++++|...++++... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4667888899999999999999999999873 22334567888999999999999999999998864 1
Q ss_pred -CCccHHHHHHHHHHHHccCChhhHHHHHHHHHHc------cCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc---
Q 004352 562 -LTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQ------YKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEK--- 631 (759)
Q Consensus 562 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 631 (759)
.+....++..++..|...|++++|...++++.+. ...|....++..++.++...|++++|+.+++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 2334567888999999999999999999999876 223556778899999999999999999999998864
Q ss_pred ---CCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHHHhC-------CCCCCHHHHHH-------HHHHHHhcCcHHHHHH
Q 004352 632 ---GCPPD-NYTYRIMIDSFCKTGGINSGYCLLLENIDK-------GFIPSLSTIGR-------VINCLCVDHRVHEAVG 693 (759)
Q Consensus 632 ---~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------g~~p~~~~~~~-------l~~~~~~~g~~~~A~~ 693 (759)
+..|+ ..++..++.+|...|++++|+.+++++++. ...|....... ....+...+.+.+|..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 22343 567889999999999999999999999862 12222222222 2222235567777777
Q ss_pred HHHHHHHCCCCCc---hHHHHHhc--cccccccchHHHHHHHhcCC
Q 004352 694 FVHLMVQKGIVPE---VVNTIFEA--DKREVASPKIVVEDLLKKSH 734 (759)
Q Consensus 694 ~~~~~~~~~~~p~---~~~~~~~~--~~~~~~~a~~~~~~~~~~~~ 734 (759)
.+++... ..|. .+..+... ..|++++|...++++++..+
T Consensus 266 ~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 266 WYKACKV--DSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHhhcCC--CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 8877765 3455 33333333 88999999999999988644
No 77
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.45 E-value=2.5e-12 Score=138.93 Aligned_cols=162 Identities=14% Similarity=0.115 Sum_probs=87.9
Q ss_pred hcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHH
Q 004352 532 ITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINA 611 (759)
Q Consensus 532 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 611 (759)
.++..++.++...|++++|+..|+++++. .+.+..++..+..+|.+.|++++|+..|+++.+. .|.+..+|..++.+
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l-~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 34555555555555555555555555543 2334455555555555555555555555555555 55555555555555
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCcHH
Q 004352 612 FSEKLNFYMAEKLFYEMSEKGCPPD-NYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSL-STIGRVINCLCVDHRVH 689 (759)
Q Consensus 612 ~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~ 689 (759)
|...|++++|++.|+++++. .|+ ..+|..++.+|...|++++|+..|+++++ +.|+. ..+..+...+...|+++
T Consensus 87 l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~--l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALK--LKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHhhhhhHHHhcccHH
Confidence 55555555555555555543 233 55555555555555555555555555555 55542 23334444445555555
Q ss_pred HHHHHHHHHHH
Q 004352 690 EAVGFVHLMVQ 700 (759)
Q Consensus 690 ~A~~~~~~~~~ 700 (759)
+|.+.++++.+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555543
No 78
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.44 E-value=1.7e-11 Score=124.23 Aligned_cols=231 Identities=10% Similarity=-0.014 Sum_probs=161.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CC-----ChhcHH
Q 004352 467 LIDGYCKQLKMEIAIEILNTMWSHGV-TPD----VITYNSLLNGLCKAAKSEDVMETFKTMIEKRC-VP-----NIITYS 535 (759)
Q Consensus 467 l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~-----~~~~~~ 535 (759)
....+...|++++|...|+++.+... .++ ..++..+..+|...|+++.|+..+++..+... .+ ...++.
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 44456678888888888888775411 122 44677778888888888888888888775310 11 134677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----CCC-ccHHHHHHHHHHHHccCChhhHHHHHHHHHHcc---CCCCchhhHHH
Q 004352 536 ILGESLCKAHKITEAFNLLEEMENK----GLT-LDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQY---KISHTTATYNI 607 (759)
Q Consensus 536 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~~ 607 (759)
.++.+|...|++++|...++++.+. +.+ ....++..++.+|...|++++|+..|+++.... ..|....++..
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 266 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFG 266 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence 7888888889999998888887753 111 123467778888888999999999998887711 25666778888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCC---CCC-HhhHHHHHHHHHhcCC---hHHHHHHHHHHHhCCCCCCHH-HHHHHH
Q 004352 608 MINAFSEKLNFYMAEKLFYEMSEKGC---PPD-NYTYRIMIDSFCKTGG---INSGYCLLLENIDKGFIPSLS-TIGRVI 679 (759)
Q Consensus 608 l~~~~~~~g~~~~A~~~~~~~~~~~~---~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g~~p~~~-~~~~l~ 679 (759)
++.++...|++++|...++++.+..- .|. ...+..+...+...|+ +.+|+.++++. +..|+.. .+..+.
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la 343 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSAA 343 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHH
Confidence 88999999999999999988876421 122 3445566667777777 77777777762 2333333 334555
Q ss_pred HHHHhcCcHHHHHHHHHHHHH
Q 004352 680 NCLCVDHRVHEAVGFVHLMVQ 700 (759)
Q Consensus 680 ~~~~~~g~~~~A~~~~~~~~~ 700 (759)
..+...|++++|.+.++++.+
T Consensus 344 ~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 344 AVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 666788999999999888765
No 79
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.41 E-value=9.5e-12 Score=111.72 Aligned_cols=161 Identities=15% Similarity=0.120 Sum_probs=80.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHH
Q 004352 534 YSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFS 613 (759)
Q Consensus 534 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 613 (759)
+..++..+...|++++|...++++.+. .+.+...+..++.++...|++++|...++++... .|.+...+..++.++.
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDA-DAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCT-TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh-CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHH
Confidence 333444444445555555555444433 2234444555555555555555555555555544 4445555555555555
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCcHHHHH
Q 004352 614 EKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPS-LSTIGRVINCLCVDHRVHEAV 692 (759)
Q Consensus 614 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~ 692 (759)
..|++++|.+.++++.+.. +.+...+..++.++...|++++|..+++++++ ..|+ ...+..+...+...|++++|.
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALG--LRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHh--cCccchHHHHHHHHHHHHcCCHHHHH
Confidence 5555555555555555432 22344555555555555555555555555555 3333 233334444445555555555
Q ss_pred HHHHHHHH
Q 004352 693 GFVHLMVQ 700 (759)
Q Consensus 693 ~~~~~~~~ 700 (759)
++++++.+
T Consensus 165 ~~~~~~~~ 172 (186)
T 3as5_A 165 PHFKKANE 172 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555544
No 80
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.41 E-value=4.4e-12 Score=136.95 Aligned_cols=165 Identities=15% Similarity=0.063 Sum_probs=140.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHH
Q 004352 495 DVITYNSLLNGLCKAAKSEDVMETFKTMIEKRCVPNIITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLIN 574 (759)
Q Consensus 495 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 574 (759)
+...++.+..+|.+.|++++|++.|++.++.. +-+..++..++.+|.+.|++++|+..|+++++. -+.+...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l-~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI-SPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHH
Confidence 35678888888888888888888888888764 235678888888888889999999999888876 3456788889999
Q ss_pred HHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCCh
Q 004352 575 GFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPD-NYTYRIMIDSFCKTGGI 653 (759)
Q Consensus 575 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 653 (759)
+|...|++++|++.|+++.+. .|.+..+|+.++.+|...|++++|++.|+++++. .|+ ...|..++.++...|++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccH
Confidence 999999999999999999988 8888999999999999999999999999999865 465 78889999999999999
Q ss_pred HHHHHHHHHHHh
Q 004352 654 NSGYCLLLENID 665 (759)
Q Consensus 654 ~~A~~~~~~~~~ 665 (759)
++|...++++++
T Consensus 162 ~~A~~~~~kal~ 173 (723)
T 4gyw_A 162 TDYDERMKKLVS 173 (723)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988876
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.40 E-value=1.4e-11 Score=110.66 Aligned_cols=170 Identities=12% Similarity=0.030 Sum_probs=149.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHH
Q 004352 496 VITYNSLLNGLCKAAKSEDVMETFKTMIEKRCVPNIITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLING 575 (759)
Q Consensus 496 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 575 (759)
...+..+...+...|++++|+..++++.+.. +.+...+..++..+...|++++|...++++.+. .+.+...+..++..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD-APDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHH
Confidence 4567778888999999999999999988763 346778889999999999999999999999886 45678888999999
Q ss_pred HHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHH
Q 004352 576 FCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINS 655 (759)
Q Consensus 576 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 655 (759)
+...|++++|...++++... .|.+...+..++.++...|++++|+..++++.+.. +.+..++..++.++...|++++
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999988 78889999999999999999999999999998763 4458899999999999999999
Q ss_pred HHHHHHHHHhCCCCCCH
Q 004352 656 GYCLLLENIDKGFIPSL 672 (759)
Q Consensus 656 A~~~~~~~~~~g~~p~~ 672 (759)
|..+++++++ ..|+.
T Consensus 163 A~~~~~~~~~--~~~~~ 177 (186)
T 3as5_A 163 ALPHFKKANE--LDEGA 177 (186)
T ss_dssp HHHHHHHHHH--HHHCC
T ss_pred HHHHHHHHHH--cCCCc
Confidence 9999999988 55543
No 82
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.39 E-value=1.2e-10 Score=117.96 Aligned_cols=295 Identities=11% Similarity=0.030 Sum_probs=177.3
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHh----hHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHH
Q 004352 435 GLCKMGCVSDANNLVNDAISKGYIPDIF----TFNTLIDGYCKQLKMEIAIEILNTMWSHGV-TPD----VITYNSLLNG 505 (759)
Q Consensus 435 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~ 505 (759)
.+...|++++|...+++........+.. +++.+...+...|++++|...+++...... .++ ..++..+...
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 3445566666666666555443211211 344455556666777777766666553210 011 1234556666
Q ss_pred HHhcCCHHHHHHHHHHHHHc----CCC--C-ChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----CccHHHHHHHHH
Q 004352 506 LCKAAKSEDVMETFKTMIEK----RCV--P-NIITYSILGESLCKAHKITEAFNLLEEMENKGL----TLDTVAFGTLIN 574 (759)
Q Consensus 506 ~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~ 574 (759)
+...|++++|...+++.... +.. | ....+..++..+...|++++|...+++...... +.....+..+..
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 182 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 77778888887777776653 111 2 123455677777888888888888888765311 112345677778
Q ss_pred HHHccCChhhHHHHHHHHHHccCCCCchhhHH-----HHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HhhHHHHHHH
Q 004352 575 GFCNSGDLDGAYQLFRRMEDQYKISHTTATYN-----IMINAFSEKLNFYMAEKLFYEMSEKGCPPD---NYTYRIMIDS 646 (759)
Q Consensus 575 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~ 646 (759)
.+...|++++|...+++.......+.....+. ..+..+...|++++|..+++++.+....+. ...+..++.+
T Consensus 183 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~ 262 (373)
T 1hz4_A 183 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA 262 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHH
Confidence 88888999999888888876532222211222 233457788999999999888775321111 2246677788
Q ss_pred HHhcCChHHHHHHHHHHHhC----CCCCCHH-HHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCc--hHHHHHhcccccc
Q 004352 647 FCKTGGINSGYCLLLENIDK----GFIPSLS-TIGRVINCLCVDHRVHEAVGFVHLMVQKGIVPE--VVNTIFEADKREV 719 (759)
Q Consensus 647 ~~~~g~~~~A~~~~~~~~~~----g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~~~~~~~~ 719 (759)
+...|++++|...++++++. |..++.. .+..+...+...|+.++|...++++... .++ ....++ ..|
T Consensus 263 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~--~~~~g~~~~~~--~~g-- 336 (373)
T 1hz4_A 263 QILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL--ANRTGFISHFV--IEG-- 336 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHHHCCCHHHH--TTH--
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--hccccHHHHHH--Hcc--
Confidence 88999999999999988752 1111222 3344455567889999999999988762 221 111111 233
Q ss_pred ccchHHHHHHHhcCCC
Q 004352 720 ASPKIVVEDLLKKSHI 735 (759)
Q Consensus 720 ~~a~~~~~~~~~~~~~ 735 (759)
+....+++++....+.
T Consensus 337 ~~~~~ll~~~~~~~~~ 352 (373)
T 1hz4_A 337 EAMAQQLRQLIQLNTL 352 (373)
T ss_dssp HHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHhCCCC
Confidence 4566777778777665
No 83
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.38 E-value=7e-11 Score=119.67 Aligned_cols=310 Identities=10% Similarity=-0.020 Sum_probs=185.0
Q ss_pred CCCCCCHHHHHHHHh------cCCChHHHHHHHHHhhhc-CCCCCCHHHH--HHHHHH--HHhCCChHHHH---------
Q 004352 1 MGRSVLPKHVAAVVK------HQKNPLTALEMFNSVKRE-DGFKHTLLTY--KYMIDK--LGFHGNFEEME--------- 60 (759)
Q Consensus 1 ~~~~l~~~~~~~~l~------~~~~~~~A~~~~~~~~~~-~~~~~~~~~~--~~l~~~--l~~~~~~~~A~--------- 60 (759)
|..++++..++..|. .++++++|.++++.+... .....+.... ..++.. ....+.+..+.
T Consensus 3 ~~~~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~ 82 (378)
T 3q15_A 3 MSQAIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVT 82 (378)
T ss_dssp ---CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHH
T ss_pred ccccccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchH
Confidence 667788899998886 689999999999987543 2333344332 222221 11112222222
Q ss_pred HHHHHHHhcCCC---CccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCC-CC----CHHHHHHHHHHHHHcCChhHHHH
Q 004352 61 NLLLEMRMDVDD---SLLEGVHIGVMRNYGRRGKVQEAVDVFERMDFYNC-EP----TVLSYNTIMNILVEYGYFSQVHK 132 (759)
Q Consensus 61 ~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~ 132 (759)
..++.+...... ...-..+...+..+...|++++|+..|+++..... .+ ...++..++.+|...|+++.|..
T Consensus 83 ~~l~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~ 162 (378)
T 3q15_A 83 ELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMY 162 (378)
T ss_dssp HHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 445544332211 00011344567778899999999999988763210 12 24567788888999999999999
Q ss_pred HHHHHHHCC--C---CC-CHHHHHHHHHHHHccCChhhHHHHHhhchhC----CC-CCCHHhHHHHHHHHHhcCChhHHH
Q 004352 133 VYMRMRNKG--I---VP-DVYTFVIRIKSFCRTRRPHVALRLLKNMPSQ----GF-EPNAVAYCTLIAGFYEENHNVEAY 201 (759)
Q Consensus 133 ~~~~~~~~~--~---~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~ 201 (759)
.+.+..+.. . .+ ...+++.+...|...|++++|.+.|++.... +- .....+++.+...+...|++++|+
T Consensus 163 ~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~ 242 (378)
T 3q15_A 163 HILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAV 242 (378)
T ss_dssp HHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 988877531 1 11 2456777788888888888888888776653 10 011345667777777888888888
Q ss_pred HHHHHHHh-----CCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCC----CCCHHHHHHHHHHHHhcCC---HHH
Q 004352 202 ELFDEMLG-----MGISPDIATFNKLIHTLCKKGNVRESEKLFNKVLKRGV----SPNLFTFNMFIQGLCRKGA---ISE 269 (759)
Q Consensus 202 ~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~---~~~ 269 (759)
+.|++... .... ...++..+...+.+.|++++|...+++..+... +.....+..+...+...++ +.+
T Consensus 243 ~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~ 321 (378)
T 3q15_A 243 EHFQKAAKVSREKVPDL-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHD 321 (378)
T ss_dssp HHHHHHHHHHHHHCGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHHHHHHHHHhhCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 88887765 3222 255666677777778888888888777765421 1112334444455555666 556
Q ss_pred HHHHHHHHhhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHH
Q 004352 270 AISLLDSLGREDLTPDVVTYNTLMCGLCKNSKVVEAEYYLHKMV 313 (759)
Q Consensus 270 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 313 (759)
|+..++..... +.....+..+...|...|++++|...|++..
T Consensus 322 al~~~~~~~~~--~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 322 LLSYFEKKNLH--AYIEACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHHHHTTCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhCCCh--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 66655552210 1122334455566666666666666666554
No 84
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.36 E-value=1.9e-11 Score=118.49 Aligned_cols=198 Identities=9% Similarity=-0.037 Sum_probs=124.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHc----CCCCC-hhcHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCc-cHHHHHHHHH
Q 004352 505 GLCKAAKSEDVMETFKTMIEK----RCVPN-IITYSILGESLCKAHKITEAFNLLEEMENK----GLTL-DTVAFGTLIN 574 (759)
Q Consensus 505 ~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~ 574 (759)
.|...|++++|++.|++.... +.+++ ..++..++.+|...|++++|+..+++.++. |... ...++..+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455566677776666665543 11111 345666777777777777777777776643 1111 1346777888
Q ss_pred HHHcc-CChhhHHHHHHHHHHccCCCCc----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH------hhHHHH
Q 004352 575 GFCNS-GDLDGAYQLFRRMEDQYKISHT----TATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDN------YTYRIM 643 (759)
Q Consensus 575 ~~~~~-g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~------~~~~~l 643 (759)
+|... |++++|+..|+++.+......+ ..++..++.++...|++++|+..|+++.+....... .+|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 88885 8888888888888775211111 356778888888888888888888888865311111 146777
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHH------HHHHHHHHH--hcCcHHHHHHHHHHHHHCCCCCc
Q 004352 644 IDSFCKTGGINSGYCLLLENIDKGFIPSLST------IGRVINCLC--VDHRVHEAVGFVHLMVQKGIVPE 706 (759)
Q Consensus 644 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~------~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~p~ 706 (759)
+.++...|++++|+..++++++ +.|+... +..++..+. ..+++++|++.++++.. ++|.
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~--l~~~ 272 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR--LDKW 272 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC--CCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc--cHHH
Confidence 7888888889999988888887 6675432 222333332 34667788877777643 4444
No 85
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.34 E-value=5.3e-10 Score=113.12 Aligned_cols=265 Identities=13% Similarity=0.057 Sum_probs=156.3
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HhhHHHHHHHH
Q 004352 401 LSQQGLILQALQLMNEMSESGCCPDMW----TYNIVINGLCKMGCVSDANNLVNDAISKGY-IPD----IFTFNTLIDGY 471 (759)
Q Consensus 401 ~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~ 471 (759)
+...|++++|...+++........+.. .+..+...+...|++++|...+++...... ..+ ..++..+...+
T Consensus 24 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 103 (373)
T 1hz4_A 24 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL 103 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 344555555555555544432111111 233344445555666666666555443210 011 12244555666
Q ss_pred HhcCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--C--ChhcHHHHHHH
Q 004352 472 CKQLKMEIAIEILNTMWSH----GVT--P-DVITYNSLLNGLCKAAKSEDVMETFKTMIEKRCV--P--NIITYSILGES 540 (759)
Q Consensus 472 ~~~~~~~~A~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~--~~~~~~~l~~~ 540 (759)
...|++++|...+++.... +.. | ....+..+...+...|++++|...+++....... + ...++..++..
T Consensus 104 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 183 (373)
T 1hz4_A 104 FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQC 183 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHH
Confidence 7777777777777766542 111 2 2334555667777778888888888777654211 1 12356667777
Q ss_pred HHhcCCHHHHHHHHHHHHHCC--CCccHHHHH----HHHHHHHccCChhhHHHHHHHHHHccCCCCc--hhhHHHHHHHH
Q 004352 541 LCKAHKITEAFNLLEEMENKG--LTLDTVAFG----TLINGFCNSGDLDGAYQLFRRMEDQYKISHT--TATYNIMINAF 612 (759)
Q Consensus 541 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~ 612 (759)
+...|++++|...+++..... ......... ..+..+...|++++|...+++.......++. ...+..++.++
T Consensus 184 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~ 263 (373)
T 1hz4_A 184 SLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQ 263 (373)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHH
Confidence 788888888888888876531 111111111 2334467888888888888887654211111 22456778888
Q ss_pred HhcCCHHHHHHHHHHHHHc----CCCCCH-hhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004352 613 SEKLNFYMAEKLFYEMSEK----GCPPDN-YTYRIMIDSFCKTGGINSGYCLLLENID 665 (759)
Q Consensus 613 ~~~g~~~~A~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 665 (759)
...|++++|...++++.+. +.+++. .++..++.++...|++++|...+++++.
T Consensus 264 ~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 264 ILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 8889999998888887643 211222 3666777888889999999999998876
No 86
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.32 E-value=5.3e-11 Score=108.66 Aligned_cols=133 Identities=14% Similarity=0.019 Sum_probs=90.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcC
Q 004352 537 LGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKL 616 (759)
Q Consensus 537 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 616 (759)
++.++...|++++|+..|+++++. .|.+...+..+..+|...|++++|+..|+++.+. .|.+..+|..++.+|...|
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQK-APNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHh
Confidence 677777778888888888777775 3456777777777777888888888888887777 7777777777777776554
Q ss_pred C--HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 004352 617 N--FYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSLSTIG 676 (759)
Q Consensus 617 ~--~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 676 (759)
+ ...+...++++. ..+|....+...+.++...|++++|+..|+++++ +.|+.....
T Consensus 137 ~~~~~~~~~~~~~~~--~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~ 194 (208)
T 3urz_A 137 EQEKKKLETDYKKLS--SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQK 194 (208)
T ss_dssp HHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHH
T ss_pred HHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHH
Confidence 3 444555565554 2223334455566667777788888888888877 777755443
No 87
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.30 E-value=4.1e-11 Score=109.35 Aligned_cols=129 Identities=8% Similarity=-0.028 Sum_probs=89.5
Q ss_pred HHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc
Q 004352 571 TLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKT 650 (759)
Q Consensus 571 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 650 (759)
.+..+|...|++++|+..|+++.+. .|.+..++..++.++...|++++|+..|+++++.. |.+..+|..++.+|...
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 3777888888888888888888887 78888888888888888888888888888888653 33477788888777665
Q ss_pred CC--hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCc
Q 004352 651 GG--INSGYCLLLENIDKGFIPSLSTIGRVINCLCVDHRVHEAVGFVHLMVQKGIVPE 706 (759)
Q Consensus 651 g~--~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 706 (759)
|+ .+.+...++++.. ..|....++....++...|++++|+..++++++ +.|+
T Consensus 136 ~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~ 189 (208)
T 3urz_A 136 AEQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPS 189 (208)
T ss_dssp HHHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCC
T ss_pred hHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCC
Confidence 53 3445555655544 333333344455555667888888888888776 4554
No 88
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.29 E-value=3.4e-11 Score=116.56 Aligned_cols=205 Identities=12% Similarity=0.006 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CC-CCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHC------C-
Q 004352 496 VITYNSLLNGLCKAAKSEDVMETFKTMIEK------RC-VPNIITYSILGESLCKAHKITEAFNLLEEMENK------G- 561 (759)
Q Consensus 496 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~- 561 (759)
..++..+..+|...|++++|+..++++++. +. +....++..++..+...|++++|...++++.+. .
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 344555555555666666666666555543 11 112335556666666666666666666666543 1
Q ss_pred CCccHHHHHHHHHHHHccCChhhHHHHHHHHHHc------cCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----
Q 004352 562 LTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQ------YKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEK---- 631 (759)
Q Consensus 562 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 631 (759)
.+....++..++.+|...|++++|...++++... ...|....++..++.+|...|++++|+.+++++.+.
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 1223455666677777777777777777776654 123344566677777777777777777777776643
Q ss_pred ---CCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHHH--hC-C-CCCCH-HHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 004352 632 ---GCPPD-NYTYRIMIDSFCKTGGINSGYCLLLENI--DK-G-FIPSL-STIGRVINCLCVDHRVHEAVGFVHLMVQ 700 (759)
Q Consensus 632 ---~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-g-~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 700 (759)
...+. ...|..+...+...+....+..+..... +. + ..|+. ..+..+...+...|++++|.++++++.+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 12232 3344444444444333333222211111 10 1 12332 2334555556777888888888877764
No 89
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.29 E-value=5e-11 Score=115.38 Aligned_cols=223 Identities=12% Similarity=0.032 Sum_probs=153.6
Q ss_pred hcCCHHHHHHHHHHHHHc-------CCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHC------C-CCccHHHHHHHH
Q 004352 508 KAAKSEDVMETFKTMIEK-------RCVPNIITYSILGESLCKAHKITEAFNLLEEMENK------G-LTLDTVAFGTLI 573 (759)
Q Consensus 508 ~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~ 573 (759)
..|++++|+..|++.++. +.+....++..++..+...|++++|...++++.+. + .+....++..++
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 456666666666655542 21224567888999999999999999999998864 1 233456788999
Q ss_pred HHHHccCChhhHHHHHHHHHHc------cCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCCC-HhhH
Q 004352 574 NGFCNSGDLDGAYQLFRRMEDQ------YKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEK------GCPPD-NYTY 640 (759)
Q Consensus 574 ~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~p~-~~~~ 640 (759)
.+|...|++++|+..|+++... ...|....++..++.+|...|++++|+.+++++.+. +-.|+ ..++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 9999999999999999999876 223566888999999999999999999999998865 11333 5788
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHH-hcC------cHHHHHHHHHHHHHCCCCCc
Q 004352 641 RIMIDSFCKTGGINSGYCLLLENIDK-------GFIPSLSTIGRVINCLC-VDH------RVHEAVGFVHLMVQKGIVPE 706 (759)
Q Consensus 641 ~~l~~~~~~~g~~~~A~~~~~~~~~~-------g~~p~~~~~~~l~~~~~-~~g------~~~~A~~~~~~~~~~~~~p~ 706 (759)
..++.+|...|++++|+.+++++++. ...|...........+. ..+ .+.++..+++.... ..|+
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 250 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV--DSPT 250 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC--CCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC--CCHH
Confidence 89999999999999999999999862 12333333333333332 222 23333333332211 2233
Q ss_pred h---HHHHHhc--cccccccchHHHHHHHhc
Q 004352 707 V---VNTIFEA--DKREVASPKIVVEDLLKK 732 (759)
Q Consensus 707 ~---~~~~~~~--~~~~~~~a~~~~~~~~~~ 732 (759)
. +..+... ..|++++|...++++++.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2 2223233 789999999999998874
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.29 E-value=7.1e-10 Score=104.19 Aligned_cols=79 Identities=13% Similarity=0.069 Sum_probs=37.7
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCChhcHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004352 480 AIEILNTMWSHGVTPDVITYNSLLNGLCKAAKSEDVMETFKTMIEKRC-VPNIITYSILGESLCKAHKITEAFNLLEEME 558 (759)
Q Consensus 480 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 558 (759)
|+..|++....+ .++..++..+..++...|++++|++++.+.+..+. .-+...+...+..+.+.|+.+.|.+.++.|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 444444444332 23333334444555555555555555555544321 1133444455555555555555555555554
Q ss_pred H
Q 004352 559 N 559 (759)
Q Consensus 559 ~ 559 (759)
+
T Consensus 164 ~ 164 (310)
T 3mv2_B 164 N 164 (310)
T ss_dssp H
T ss_pred h
Confidence 4
No 91
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.28 E-value=1.1e-11 Score=106.22 Aligned_cols=144 Identities=8% Similarity=0.031 Sum_probs=109.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcC
Q 004352 537 LGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKL 616 (759)
Q Consensus 537 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 616 (759)
|+..+...|++++|+..++..... .+.+...+..+..+|...|++++|++.|+++.+. .|.++.+|..++.+|...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~-~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPS-PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCS-HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhccc-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC
Confidence 445556677888888888887654 2334455677888888999999999999998888 8888889999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCChHHHHHH-HHHHHhCCCCCCHHHHHHHHHHH-HhcCc
Q 004352 617 NFYMAEKLFYEMSEKGCPPD-NYTYRIMIDSFCKTGGINSGYCL-LLENIDKGFIPSLSTIGRVINCL-CVDHR 687 (759)
Q Consensus 617 ~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~g~~p~~~~~~~l~~~~-~~~g~ 687 (759)
++++|+..|+++++. .|+ ..+|..++.+|...|++++|... ++++++ +.|+++..+.+...+ ...|+
T Consensus 80 ~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~--l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 80 NTDKAVECYRRSVEL--NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK--LFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTCCC
T ss_pred chHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhCc
Confidence 999999999998865 454 78888888888899988776654 588888 888877666655544 44553
No 92
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.26 E-value=3.1e-10 Score=108.11 Aligned_cols=170 Identities=10% Similarity=0.003 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---hhcHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCccHHHHH
Q 004352 496 VITYNSLLNGLCKAAKSEDVMETFKTMIEKRCVPN---IITYSILGESLCKAHKITEAFNLLEEMENKG--LTLDTVAFG 570 (759)
Q Consensus 496 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~ 570 (759)
...+..+...+.+.|++++|+..|+++++.. +.+ ...+..++.++...|++++|...|+++++.. .+.....+.
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 3334444444445555555555555554432 111 2344444555555555555555555554431 111233344
Q ss_pred HHHHHHHc--------cCChhhHHHHHHHHHHccCCCCchhhH-----------------HHHHHHHHhcCCHHHHHHHH
Q 004352 571 TLINGFCN--------SGDLDGAYQLFRRMEDQYKISHTTATY-----------------NIMINAFSEKLNFYMAEKLF 625 (759)
Q Consensus 571 ~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~-----------------~~l~~~~~~~g~~~~A~~~~ 625 (759)
.+..++.. .|++++|+..|+++... .|.+.... ..++.+|...|++++|+..|
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 171 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY 171 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 44445544 55555555555555555 34443333 44556666666666666666
Q ss_pred HHHHHcCCCCC----HhhHHHHHHHHHhc----------CChHHHHHHHHHHHhCCCCCCH
Q 004352 626 YEMSEKGCPPD----NYTYRIMIDSFCKT----------GGINSGYCLLLENIDKGFIPSL 672 (759)
Q Consensus 626 ~~~~~~~~~p~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~g~~p~~ 672 (759)
+++++. .|+ ...+..++.+|... |++++|+..++++++ ..|++
T Consensus 172 ~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~ 228 (261)
T 3qky_A 172 EAVFDA--YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ--IFPDS 228 (261)
T ss_dssp HHHHHH--CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH--HCTTC
T ss_pred HHHHHH--CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH--HCCCC
Confidence 666544 222 23455555555544 556666666666665 44543
No 93
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.26 E-value=2.5e-10 Score=108.72 Aligned_cols=167 Identities=10% Similarity=0.008 Sum_probs=124.3
Q ss_pred CChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcc---HHHHHHHHHHHHccCChhhHHHHHHHHHHccC-CCCchhh
Q 004352 529 PNIITYSILGESLCKAHKITEAFNLLEEMENKGLTLD---TVAFGTLINGFCNSGDLDGAYQLFRRMEDQYK-ISHTTAT 604 (759)
Q Consensus 529 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~ 604 (759)
.+...+...+..+...|++++|+..|+++++. .|.+ ...+..++.+|...|++++|+..|+++..... .|....+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTY-GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG-CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 35567777888888899999999999998876 2334 67788888889999999999999999988732 2234567
Q ss_pred HHHHHHHHHh--------cCCHHHHHHHHHHHHHcCCCCC-HhhH-----------------HHHHHHHHhcCChHHHHH
Q 004352 605 YNIMINAFSE--------KLNFYMAEKLFYEMSEKGCPPD-NYTY-----------------RIMIDSFCKTGGINSGYC 658 (759)
Q Consensus 605 ~~~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~p~-~~~~-----------------~~l~~~~~~~g~~~~A~~ 658 (759)
+..++.++.. .|++++|+..|+++++. .|+ ...+ ..++.+|...|++++|+.
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 169 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAV 169 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 7888888888 89999999999998876 344 3444 455777888888888888
Q ss_pred HHHHHHhCCCCCC----HHHHHHHHHHHHhc----------CcHHHHHHHHHHHHH
Q 004352 659 LLLENIDKGFIPS----LSTIGRVINCLCVD----------HRVHEAVGFVHLMVQ 700 (759)
Q Consensus 659 ~~~~~~~~g~~p~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~ 700 (759)
.|+++++ ..|+ ...+..+..++... |++++|+..++++.+
T Consensus 170 ~~~~~l~--~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~ 223 (261)
T 3qky_A 170 TYEAVFD--AYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ 223 (261)
T ss_dssp HHHHHHH--HCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH--HCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH
Confidence 8888887 5554 23444555555544 777778887777776
No 94
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.25 E-value=2.1e-10 Score=111.07 Aligned_cols=215 Identities=13% Similarity=0.018 Sum_probs=157.8
Q ss_pred ChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHH
Q 004352 441 CVSDANNLVNDAISKGYIPDIFTFNTLIDGYCKQLKMEIAIEILNTMWSH----GVTPD-VITYNSLLNGLCKAAKSEDV 515 (759)
Q Consensus 441 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a 515 (759)
++++|...+... +..|...|++++|...|.+.... +-+++ ..+|+.+..+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 477777777665 34577889999999998887653 21111 46788889999999999999
Q ss_pred HHHHHHHHHcCCC-CC----hhcHHHHHHHHHhc-CCHHHHHHHHHHHHHCC----CCc-cHHHHHHHHHHHHccCChhh
Q 004352 516 METFKTMIEKRCV-PN----IITYSILGESLCKA-HKITEAFNLLEEMENKG----LTL-DTVAFGTLINGFCNSGDLDG 584 (759)
Q Consensus 516 ~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~g~~~~ 584 (759)
+..|++.++.... .+ ..++..++.+|... |++++|+..|++.++.. .+. ...++..++.+|...|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 9999988764111 11 34788889999996 99999999999988641 111 13568889999999999999
Q ss_pred HHHHHHHHHHccCCCCchh-------hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHh------hHHHHHHHHH--h
Q 004352 585 AYQLFRRMEDQYKISHTTA-------TYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNY------TYRIMIDSFC--K 649 (759)
Q Consensus 585 A~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~------~~~~l~~~~~--~ 649 (759)
|+..|+++... .|.+.. .|..++.++...|++++|+..|++.++ +.|+.. .+..++.++. .
T Consensus 177 A~~~~~~al~~--~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~ 252 (292)
T 1qqe_A 177 ASDIYSKLIKS--SMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGD 252 (292)
T ss_dssp HHHHHHHHHHT--TSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHH--HhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCC
Confidence 99999999987 343322 578889999999999999999999984 355521 2444555554 4
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHH
Q 004352 650 TGGINSGYCLLLENIDKGFIPSLSTIG 676 (759)
Q Consensus 650 ~g~~~~A~~~~~~~~~~g~~p~~~~~~ 676 (759)
.+++++|+..|+++.. +.|......
T Consensus 253 ~~~~~~A~~~~~~~~~--l~~~~~~~~ 277 (292)
T 1qqe_A 253 SEQLSEHCKEFDNFMR--LDKWKITIL 277 (292)
T ss_dssp TTTHHHHHHHHTTSSC--CCHHHHHHH
T ss_pred HHHHHHHHHHhccCCc--cHHHHHHHH
Confidence 5679999999988877 677654443
No 95
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.22 E-value=3e-09 Score=100.02 Aligned_cols=145 Identities=9% Similarity=0.010 Sum_probs=68.0
Q ss_pred HHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CccHHHHHHHHHHHHccCChhhHHHHHHHHH
Q 004352 515 VMETFKTMIEKRCVPNIITYSILGESLCKAHKITEAFNLLEEMENKGL-TLDTVAFGTLINGFCNSGDLDGAYQLFRRME 593 (759)
Q Consensus 515 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 593 (759)
|+..+++....+ .++..++..++.++...|++++|++++.+.+..+. ..+...+...+..+.+.|+.+.|.+.++++.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 445555554432 23333444555555555555555555555544321 1244455555555555555555555555555
Q ss_pred HccCCCC----chhhHHHHH--HHHHhcC--CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 004352 594 DQYKISH----TTATYNIMI--NAFSEKL--NFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCLLLENI 664 (759)
Q Consensus 594 ~~~~~~~----~~~~~~~l~--~~~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 664 (759)
+. .|+ +..+...++ ++....| ++.+|..+|+++.+. .|+..+...+..++...|++++|...++.+.
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44 331 112222222 2233333 555555555555433 3432222223335555555555555555443
No 96
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.20 E-value=1.2e-09 Score=101.12 Aligned_cols=184 Identities=6% Similarity=-0.056 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-C-ChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccH---HHHH
Q 004352 496 VITYNSLLNGLCKAAKSEDVMETFKTMIEKRCV-P-NIITYSILGESLCKAHKITEAFNLLEEMENKGLTLDT---VAFG 570 (759)
Q Consensus 496 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~ 570 (759)
...+..+...+...|++++|+..|+++++.... | ....+..++.++...|++++|+..|+++++.. |.+. ..+.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-P~~~~~~~a~~ 82 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCcHHHHHH
Confidence 444555666677777777777777777765321 1 12356667777777777777777777777642 2121 2344
Q ss_pred HHHHHHHc------------------cCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004352 571 TLINGFCN------------------SGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKG 632 (759)
Q Consensus 571 ~l~~~~~~------------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 632 (759)
.+..++.. .|++++|+..|+++.+. .|.+...+......... ...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~----------~~~~---- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFL----------KDRL---- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHH----------HHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHH----------HHHH----
Confidence 44444443 34445555555555544 34433332211110000 0000
Q ss_pred CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCcHHHHHHHHHHHHHCC
Q 004352 633 CPPDNYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSL----STIGRVINCLCVDHRVHEAVGFVHLMVQKG 702 (759)
Q Consensus 633 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 702 (759)
......++..+...|++++|+..|+++++ ..|+. ..+..+..++.+.|++++|.+.++++...+
T Consensus 147 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 ----AKYEYSVAEYYTERGAWVAVVNRVEGMLR--DYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHH--HCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 01113566788899999999999999998 66764 345667777789999999999999888743
No 97
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.19 E-value=9e-10 Score=92.55 Aligned_cols=125 Identities=14% Similarity=0.224 Sum_probs=52.9
Q ss_pred HHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc
Q 004352 571 TLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKT 650 (759)
Q Consensus 571 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 650 (759)
.++..+...|++++|..+++++... .|.+...+..++..+...|++++|..+++++.+.. +.+...+..++.++...
T Consensus 6 ~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 6 NLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHh
Confidence 3334444444444444444444433 33334444444444444444444444444444331 22233444444444444
Q ss_pred CChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 004352 651 GGINSGYCLLLENIDKGFIPS-LSTIGRVINCLCVDHRVHEAVGFVHLMVQ 700 (759)
Q Consensus 651 g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 700 (759)
|++++|+.+++++++ ..|+ ...+..+...+...|++++|..+++++..
T Consensus 83 ~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 83 GDYDEAIEYYQKALE--LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 444444444444444 2232 22233333333444444444444444443
No 98
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.18 E-value=4.5e-10 Score=122.35 Aligned_cols=173 Identities=10% Similarity=-0.031 Sum_probs=140.9
Q ss_pred HhcCCHHHHHHHHHHHH--------HcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHc
Q 004352 507 CKAAKSEDVMETFKTMI--------EKRCVPNIITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCN 578 (759)
Q Consensus 507 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 578 (759)
...|++++|++.+++.. +.. +.+...+..++.++...|++++|+..++++++. .+.+...|..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAER-VGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc-CcchHHHHHHHHHHHHH
Confidence 67889999999999988 432 345677888899999999999999999999886 35577888889999999
Q ss_pred cCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHH
Q 004352 579 SGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYC 658 (759)
Q Consensus 579 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 658 (759)
.|++++|+..|+++.+. .|.+...|..++.++...|++++ ++.|+++++.. +.+...|..++.++...|++++|+.
T Consensus 480 ~g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999988 88889999999999999999999 99999998763 3347889999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHH-HHHHHHHhcCc
Q 004352 659 LLLENIDKGFIPSLSTIG-RVINCLCVDHR 687 (759)
Q Consensus 659 ~~~~~~~~g~~p~~~~~~-~l~~~~~~~g~ 687 (759)
.|+++++ +.|+..... .+...+...|+
T Consensus 556 ~~~~al~--l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPP--TSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCT--TSTTHHHHHHHHHHHTC----
T ss_pred HHHhhcc--cCcccHHHHHHHHHHHHccCC
Confidence 9999988 888865554 44444444443
No 99
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.17 E-value=2.7e-09 Score=97.45 Aligned_cols=174 Identities=9% Similarity=0.016 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccC----ChhhHHHHH
Q 004352 514 DVMETFKTMIEKRCVPNIITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSG----DLDGAYQLF 589 (759)
Q Consensus 514 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~ 589 (759)
+|++.|++..+.| ++..+..++..|...+++++|..+|++..+.+ ++..+..+...|.. + ++++|+..|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3556666666654 56666677777777777777777777777654 55666666666666 5 777788877
Q ss_pred HHHHHccCCCCchhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCC---HhhHHHHHHHHHh----cCChHHHHH
Q 004352 590 RRMEDQYKISHTTATYNIMINAFSE----KLNFYMAEKLFYEMSEKGCPPD---NYTYRIMIDSFCK----TGGINSGYC 658 (759)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~----~g~~~~A~~ 658 (759)
++..+. .++.++..++.+|.. .+++++|+.+|+++.+.+ |. +..+..|+..|.. .+++++|+.
T Consensus 77 ~~A~~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 150 (212)
T 3rjv_A 77 EKAVEA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDS--ESDAAVDAQMLLGLIYASGVHGPEDDVKASE 150 (212)
T ss_dssp HHHHHT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST--TSHHHHHHHHHHHHHHHHTSSSSCCHHHHHH
T ss_pred HHHHHC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC--CCcchHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 777543 356677777777776 677888888888877554 32 6677777777777 677888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhc-C-----cHHHHHHHHHHHHHCC
Q 004352 659 LLLENIDKGFIPSLSTIGRVINCLCVD-H-----RVHEAVGFVHLMVQKG 702 (759)
Q Consensus 659 ~~~~~~~~g~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~ 702 (759)
+|+++.+ ..++......+...+... | +.++|..++++..+.|
T Consensus 151 ~~~~A~~--~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 151 YFKGSSS--LSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHH--TSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHH--cCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 8888877 323344455555555322 3 7888888888877754
No 100
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.16 E-value=5.8e-10 Score=121.54 Aligned_cols=247 Identities=7% Similarity=-0.071 Sum_probs=181.1
Q ss_pred HhcCCHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHh
Q 004352 472 CKQLKMEIAIEILNTMW--------SHGVTPDVITYNSLLNGLCKAAKSEDVMETFKTMIEKRCVPNIITYSILGESLCK 543 (759)
Q Consensus 472 ~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 543 (759)
...|++++|++.+++.. +.. +.+...+..+..++...|++++|+..|+++++.+ +.+...+..++.++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 67899999999999998 432 3356788889999999999999999999999874 3467889999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHH
Q 004352 544 AHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEK 623 (759)
Q Consensus 544 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 623 (759)
.|++++|...|+++++. .+.+...+..+..+|...|++++ +..|+++.+. .|.+..+|..++.++...|++++|++
T Consensus 480 ~g~~~~A~~~~~~al~l-~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDT-FPGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHHH-STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999986 35577889999999999999999 9999999998 89999999999999999999999999
Q ss_pred HHHHHHHcCCCCC-HhhHHHHHHHHHhcCChHHH-----HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 004352 624 LFYEMSEKGCPPD-NYTYRIMIDSFCKTGGINSG-----YCLLLENIDKGFIPSLSTIGRVINCLCVDHRVHEAVGFVHL 697 (759)
Q Consensus 624 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A-----~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 697 (759)
.|+++.+. .|+ ...+..++.++...|+.+++ .+..+.... +.++......+... -++.+..+
T Consensus 556 ~~~~al~l--~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~--~~~~~~~~~~l~~~-----ll~~~l~~--- 623 (681)
T 2pzi_A 556 TLDEVPPT--SRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEA--LPPTEPRVLQIRAL-----VLGGALDW--- 623 (681)
T ss_dssp HHHTSCTT--STTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHT--SCTTSTTHHHHHHH-----HHHHHHHH---
T ss_pred HHHhhccc--CcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhh--CCCCcHHHHHHHHH-----HHHHHHHH---
Confidence 99999854 676 77888888888776663332 223333333 44554443322111 11111111
Q ss_pred HHHCCCCCchHHHHHhc---cccccccchHHHHHHHhcCCCchHH
Q 004352 698 MVQKGIVPEVVNTIFEA---DKREVASPKIVVEDLLKKSHITYYA 739 (759)
Q Consensus 698 ~~~~~~~p~~~~~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~ 739 (759)
.. ...|+ +..+++. ..+-...+.+.|+++....+.+..-
T Consensus 624 ~~--~~~~~-~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~~~r 665 (681)
T 2pzi_A 624 LK--DNKAS-TNHILGFPFTSHGLRLGVEASLRSLARVAPTQRHR 665 (681)
T ss_dssp HT--SCCCS-SSEETTEESSHHHHHHHHHHHHHHHHHHCSSHHHH
T ss_pred HH--ccCCC-CcccCCCCCChHHHHHHHHHHHHHHHHhCCChHHH
Confidence 11 23444 3345555 3344456888888888877765543
No 101
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.16 E-value=5.3e-08 Score=100.93 Aligned_cols=123 Identities=9% Similarity=-0.062 Sum_probs=56.2
Q ss_pred HHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 004352 568 AFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKL-NFYMAEKLFYEMSEKGCPPDNYTYRIMIDS 646 (759)
Q Consensus 568 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 646 (759)
+|...+..+.+.+..+.|..+|+++ .. .+.+...|...+..-...+ +.+.|..+|+.+.+.. +.++..|...+..
T Consensus 288 lw~~y~~~~~r~~~~~~AR~i~~~A-~~--~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~ 363 (493)
T 2uy1_A 288 LRINHLNYVLKKRGLELFRKLFIEL-GN--EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHH-TT--SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh-hC--CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 3444455444555555555555555 21 1122333333332222222 4555555555555431 2223444444444
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 004352 647 FCKTGGINSGYCLLLENIDKGFIPSLSTIGRVINCLCVDHRVHEAVGFVHLMV 699 (759)
Q Consensus 647 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 699 (759)
....|+.+.|..+|+++. .....|...+..-...|+.+.+.++++++.
T Consensus 364 e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 364 LLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455555555655555541 122333333332244556555555555544
No 102
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.16 E-value=1.6e-09 Score=91.06 Aligned_cols=133 Identities=15% Similarity=0.232 Sum_probs=118.0
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHH
Q 004352 533 TYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAF 612 (759)
Q Consensus 533 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 612 (759)
.+..++..+...|++++|..+++++.+. .+.+...+..++..+...|++++|...++++... .|.+...+..++.++
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALEL-DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHc-CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 5677888999999999999999999886 3557788888999999999999999999999988 778888999999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 004352 613 SEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPS 671 (759)
Q Consensus 613 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 671 (759)
...|++++|+.+++++.+.. +.+..++..++.++...|++++|...++++++ ..|+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE--LDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--HSTT
T ss_pred HHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc--cCCC
Confidence 99999999999999998763 44588899999999999999999999999988 5564
No 103
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.15 E-value=2.9e-09 Score=98.47 Aligned_cols=187 Identities=9% Similarity=-0.023 Sum_probs=134.2
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh---hcH
Q 004352 460 DIFTFNTLIDGYCKQLKMEIAIEILNTMWSHGVT-P-DVITYNSLLNGLCKAAKSEDVMETFKTMIEKRCVPNI---ITY 534 (759)
Q Consensus 460 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~ 534 (759)
+...+..+...+...|++++|+..|+++.+..+. | ....+..++.++.+.|++++|+..|+++++..+. +. ..+
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~-~~~~~~a~ 81 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT-HPNIDYVM 81 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CCcHHHHH
Confidence 4455667778899999999999999999975322 1 1357888899999999999999999999987422 22 245
Q ss_pred HHHHHHHHh------------------cCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHcc
Q 004352 535 SILGESLCK------------------AHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQY 596 (759)
Q Consensus 535 ~~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 596 (759)
..++.++.. .|++++|...|+++++. .|.+...+...... ..+...
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-~P~~~~a~~a~~~l--------------~~~~~~- 145 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG-YPNSQYTTDATKRL--------------VFLKDR- 145 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT-CTTCTTHHHHHHHH--------------HHHHHH-
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH-CcCChhHHHHHHHH--------------HHHHHH-
Confidence 666666654 57899999999999986 34344333222111 111110
Q ss_pred CCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-H---hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 004352 597 KISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPD-N---YTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPS 671 (759)
Q Consensus 597 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 671 (759)
.......++..|...|++++|+..|+++++. .|+ + ..+..++.++.+.|++++|+..++++.. ..|+
T Consensus 146 ----~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~--~~~~ 216 (225)
T 2yhc_A 146 ----LAKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA--NSSN 216 (225)
T ss_dssp ----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--CCSC
T ss_pred ----HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCC
Confidence 1122346778888999999999999999876 344 2 5688888899999999999999998887 4454
No 104
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.15 E-value=3e-09 Score=97.20 Aligned_cols=175 Identities=11% Similarity=0.016 Sum_probs=132.1
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcC----CHHHHHHHH
Q 004352 479 IAIEILNTMWSHGVTPDVITYNSLLNGLCKAAKSEDVMETFKTMIEKRCVPNIITYSILGESLCKAH----KITEAFNLL 554 (759)
Q Consensus 479 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~ 554 (759)
+|.+.|++..+.| ++..+..+...|...+++++|++.|++..+.+ +...+..++..|.. + ++++|..+|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4566677776653 66777777777777888888888888877764 56667777777766 5 788888888
Q ss_pred HHHHHCCCCccHHHHHHHHHHHHc----cCChhhHHHHHHHHHHccCCC--CchhhHHHHHHHHHh----cCCHHHHHHH
Q 004352 555 EEMENKGLTLDTVAFGTLINGFCN----SGDLDGAYQLFRRMEDQYKIS--HTTATYNIMINAFSE----KLNFYMAEKL 624 (759)
Q Consensus 555 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~----~g~~~~A~~~ 624 (759)
++..+.+ +...+..+..+|.. .+++++|+..|++..+. .+ .++.++..++.+|.. .+++++|+.+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 151 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD--SESDAAVDAQMLLGLIYASGVHGPEDDVKASEY 151 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS--TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc--CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 8887654 56677777777776 78888899888888876 33 237788888888888 7789999999
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHhc-C-----ChHHHHHHHHHHHhCC
Q 004352 625 FYEMSEKGCPPDNYTYRIMIDSFCKT-G-----GINSGYCLLLENIDKG 667 (759)
Q Consensus 625 ~~~~~~~~~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~g 667 (759)
|+++.+. +++...+..|+..|... | ++++|+.+|+++.+.|
T Consensus 152 ~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 152 FKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 9998865 34556777788877653 3 8899999999988854
No 105
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.14 E-value=1.8e-10 Score=98.56 Aligned_cols=145 Identities=8% Similarity=-0.033 Sum_probs=81.5
Q ss_pred HHHHHhcCCChHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhc
Q 004352 10 VAAVVKHQKNPLTALEMFNSVKREDGFKHTLLTYKYMIDKLGFHGNFEEMENLLLEMRMDVDDSLLEGVHIGVMRNYGRR 89 (759)
Q Consensus 10 ~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 89 (759)
|+.+...+|++++|+..|+.+....+ ..+..+..++.+|.+.|++++|++.|+++...+|. +..++..++.+|...
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p--~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~--~~~a~~~lg~~~~~~ 78 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPR--QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER--DPKAHRFLGLLYELE 78 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHH--HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHT
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCc--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHc
Confidence 34444555666666666666543321 12234445666666666666666666666666666 666666666666666
Q ss_pred CChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCChhHHHHH-HHHHHHCCCCCCHHHHHHHHHHHHccC
Q 004352 90 GKVQEAVDVFERMDFYNCEPTVLSYNTIMNILVEYGYFSQVHKV-YMRMRNKGIVPDVYTFVIRIKSFCRTR 160 (759)
Q Consensus 90 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~ 160 (759)
|++++|+..|+++.... +.++.+|..+..+|.+.|++++|... +++.++.. |.++.+|......+...|
T Consensus 79 ~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 79 ENTDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred CchHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 66666666666666544 34555666666666666666554443 35555532 224455555555444444
No 106
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.14 E-value=4e-10 Score=99.72 Aligned_cols=156 Identities=8% Similarity=-0.012 Sum_probs=65.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHH-Hh
Q 004352 536 ILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAF-SE 614 (759)
Q Consensus 536 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~ 614 (759)
..+..+...|++++|...++++++. .|.+...+..+..++...|++++|+..|+++... .| ++..+..++... ..
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~-~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p-~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDE-LQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQ-DNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHH-HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cC-ChHHHHHHHHHHHHh
Confidence 3344444444444444444444432 1223444444444444444444444444444433 22 222222222111 11
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCcHHHH
Q 004352 615 KLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPS---LSTIGRVINCLCVDHRVHEA 691 (759)
Q Consensus 615 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~---~~~~~~l~~~~~~~g~~~~A 691 (759)
.+...+|+..++++++.. |.+...+..++.++...|++++|+..|+++++ ..|+ ...+..+...+...|+.++|
T Consensus 87 ~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 87 QAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILK--VNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred hcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHH--hCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 112223444444444331 11244445555555555555555555555554 3332 12333344444445555555
Q ss_pred HHHHHHH
Q 004352 692 VGFVHLM 698 (759)
Q Consensus 692 ~~~~~~~ 698 (759)
...|++.
T Consensus 164 ~~~y~~a 170 (176)
T 2r5s_A 164 ASKYRRQ 170 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555444
No 107
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.13 E-value=9.1e-10 Score=106.08 Aligned_cols=160 Identities=10% Similarity=-0.040 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHH-HHHHHHH
Q 004352 497 ITYNSLLNGLCKAAKSEDVMETFKTMIEKRCVPNIITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVA-FGTLING 575 (759)
Q Consensus 497 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~ 575 (759)
..+..+...+...|++++|...|++.++.. +.+...+..++.++...|++++|...++++... .|+... .......
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~ 194 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHHH
Confidence 334444444445555555555555544432 123344444444555555555555555444432 122221 1111122
Q ss_pred HHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HhhHHHHHHHHHhcCC
Q 004352 576 FCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPD---NYTYRIMIDSFCKTGG 652 (759)
Q Consensus 576 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~ 652 (759)
+...++.++|+..+++.... .|++...+..++.++...|++++|+..|+++++.. |+ ...+..++.++...|+
T Consensus 195 l~~~~~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~--p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRXD--LTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTGGGGHHHHHHHHHHHHHCT
T ss_pred HHhhcccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc--cccccchHHHHHHHHHHHcCC
Confidence 33444444444445444444 44444444445555555555555555554444331 22 3344444444444444
Q ss_pred hHHHHHHHHHH
Q 004352 653 INSGYCLLLEN 663 (759)
Q Consensus 653 ~~~A~~~~~~~ 663 (759)
.++|...+++.
T Consensus 271 ~~~a~~~~r~a 281 (287)
T 3qou_A 271 GDALASXYRRQ 281 (287)
T ss_dssp TCHHHHHHHHH
T ss_pred CCcHHHHHHHH
Confidence 44444444443
No 108
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.12 E-value=7.7e-10 Score=91.05 Aligned_cols=109 Identities=9% Similarity=-0.001 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 004352 566 TVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMID 645 (759)
Q Consensus 566 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 645 (759)
...+...+..|.+.|++++|+..|+++++. .|.+..+|..++.+|...|++++|+..++++++.. +.+...|..++.
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~ 89 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAA 89 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHH
Confidence 345667778888888888888888888887 78888888888888888888888888888888653 334778888888
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004352 646 SFCKTGGINSGYCLLLENIDKGFIPSLSTIGRVI 679 (759)
Q Consensus 646 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 679 (759)
++...|++++|+..|+++++ +.|++.....-+
T Consensus 90 ~~~~~~~~~~A~~~~~~al~--l~P~~~~a~~~l 121 (126)
T 4gco_A 90 CLVAMREWSKAQRAYEDALQ--VDPSNEEAREGV 121 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH--HCcCCHHHHHHH
Confidence 88888888888888888888 778766554433
No 109
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.12 E-value=3.5e-08 Score=94.04 Aligned_cols=223 Identities=10% Similarity=-0.011 Sum_probs=149.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCChhcHHHHHHHH----Hhc---CCH
Q 004352 477 MEIAIEILNTMWSHGVTPDVITYNSLLNGLCKAA--KSEDVMETFKTMIEKRCVPNIITYSILGESL----CKA---HKI 547 (759)
Q Consensus 477 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~~ 547 (759)
.++|+.+++.++..++ -+...|+.-..++...+ +++++++.++.++..++ -+..+|+.-...+ ... +++
T Consensus 49 s~~aL~~t~~~L~~nP-~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 49 SERALHITELGINELA-SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp SHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CHHHHHHHHHHHHHCc-HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHhccccCCH
Confidence 3567777777776532 24556666666666666 77777777777777642 2444555544444 444 677
Q ss_pred HHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChh--hHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCC------HH
Q 004352 548 TEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLD--GAYQLFRRMEDQYKISHTTATYNIMINAFSEKLN------FY 619 (759)
Q Consensus 548 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~ 619 (759)
++++.+++.+.+. .+-+..+|+.-..++.+.|.++ ++++.++++.+. .|.+..+|+....++...++ ++
T Consensus 127 ~~EL~~~~~~l~~-~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 127 YREFDILEAMLSS-DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp HHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhHH
Confidence 7888888888775 3556777777666777777777 888888888877 77788888888877777776 78
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHH-HHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCcHHHHHHHHH
Q 004352 620 MAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINS-GYCLLLENIDKG-FIP-SLSTIGRVINCLCVDHRVHEAVGFVH 696 (759)
Q Consensus 620 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~g-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 696 (759)
++++.+++++... +-|...|+.+...+.+.|+... ...+.+++++.+ ..| +...+..+...+.+.|+.++|+++++
T Consensus 204 eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 204 EELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 8888888887653 4457788888887777777444 445666555411 113 44555566666677788888888888
Q ss_pred HHHHCCCCCc
Q 004352 697 LMVQKGIVPE 706 (759)
Q Consensus 697 ~~~~~~~~p~ 706 (759)
.+.++ ++|-
T Consensus 283 ~l~~~-~Dpi 291 (306)
T 3dra_A 283 LLKSK-YNPI 291 (306)
T ss_dssp HHHHT-TCGG
T ss_pred HHHhc-cChH
Confidence 87652 4444
No 110
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.11 E-value=2e-07 Score=96.64 Aligned_cols=125 Identities=12% Similarity=-0.019 Sum_probs=82.5
Q ss_pred hcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccC-ChhhHHHHHHHHHHccCCCCchhhHHHHHH
Q 004352 532 ITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSG-DLDGAYQLFRRMEDQYKISHTTATYNIMIN 610 (759)
Q Consensus 532 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 610 (759)
..|...+..+.+.+..+.|..+|+++ +. .+.+...|...+..-...+ +.+.|..+|+...+. .|.++..+...+.
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~--~~~~~~~~~~yid 362 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK--HPDSTLLKEEFFL 362 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 34555555555666777788888777 32 1234444544333333333 588888888888877 4556666666777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004352 611 AFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCLLLENID 665 (759)
Q Consensus 611 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 665 (759)
.....|+.+.|..+|+++. .....|...+..-...|+.+.+..+++++.+
T Consensus 363 ~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 363 FLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7777788888888888872 2456677777766777888888888887764
No 111
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.09 E-value=2.9e-09 Score=102.58 Aligned_cols=166 Identities=10% Similarity=-0.041 Sum_probs=125.4
Q ss_pred CChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHH
Q 004352 529 PNIITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIM 608 (759)
Q Consensus 529 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 608 (759)
.+...+..++..+...|++++|...++++.+. .|.+...+..++.++...|++++|...++++... .|+........
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~ 191 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQL-SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVA 191 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHH
Confidence 34556677778888888888888888888876 3556777888888888888888888888888776 55544444445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhc
Q 004352 609 INAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSL---STIGRVINCLCVD 685 (759)
Q Consensus 609 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~---~~~~~l~~~~~~~ 685 (759)
...+...++.++|+..++++.+.. |.+...+..++.++...|++++|+..+.++++ ..|+. ..+..++..+...
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~--~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLR--XDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHh--cccccccchHHHHHHHHHHHc
Confidence 555777788888888888888663 33477888888888888888888888888888 66754 3455666666778
Q ss_pred CcHHHHHHHHHHHHH
Q 004352 686 HRVHEAVGFVHLMVQ 700 (759)
Q Consensus 686 g~~~~A~~~~~~~~~ 700 (759)
|+.++|...+++...
T Consensus 269 g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 269 GTGDALASXYRRQLY 283 (287)
T ss_dssp CTTCHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHH
Confidence 888888888877654
No 112
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.08 E-value=1.7e-09 Score=95.63 Aligned_cols=160 Identities=8% Similarity=-0.013 Sum_probs=116.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHH-HH
Q 004352 499 YNSLLNGLCKAAKSEDVMETFKTMIEKRCVPNIITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLING-FC 577 (759)
Q Consensus 499 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~ 577 (759)
+......+...|++++|+..|++.++.. +.+...+..++.++...|++++|...++++.... |+...+...... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 3445556677777777777777776653 2355667777777777788888888777776542 244333222212 12
Q ss_pred ccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HhhHHHHHHHHHhcCChH
Q 004352 578 NSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPD---NYTYRIMIDSFCKTGGIN 654 (759)
Q Consensus 578 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~ 654 (759)
..+...+|+..++++.+. .|.+...+..++.++...|++++|+..|+++++. .|+ ...+..++.++...|+.+
T Consensus 86 ~~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~a~~~l~~~~~~~g~~~ 161 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKV--NLGAQDGEVKKTFMDILSALGQGN 161 (176)
T ss_dssp HHHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTTTTTHHHHHHHHHHHHHCSSC
T ss_pred hhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CcccChHHHHHHHHHHHHHhCCCC
Confidence 223445678889999888 8888999999999999999999999999999865 444 457888999999999999
Q ss_pred HHHHHHHHHHh
Q 004352 655 SGYCLLLENID 665 (759)
Q Consensus 655 ~A~~~~~~~~~ 665 (759)
+|...|++++.
T Consensus 162 ~A~~~y~~al~ 172 (176)
T 2r5s_A 162 AIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 99999998764
No 113
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.08 E-value=1.9e-09 Score=91.40 Aligned_cols=104 Identities=13% Similarity=-0.053 Sum_probs=82.9
Q ss_pred cHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 004352 565 DTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMI 644 (759)
Q Consensus 565 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 644 (759)
+...+..+...+...|++++|+..|+++... .|.++..|..++.+|...|++++|+..|+++++.. |.++..|..++
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg 111 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHH
Confidence 4556777778888888888888888888887 78888888888888888888888888888888653 33477888888
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 004352 645 DSFCKTGGINSGYCLLLENIDKGFIPSLS 673 (759)
Q Consensus 645 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 673 (759)
.+|...|++++|+..|+++++ +.|+.+
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~--l~~~~~ 138 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQ--HSNDEK 138 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HCCCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH--hCCCHH
Confidence 888888888888888888888 677765
No 114
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.08 E-value=1.7e-09 Score=116.00 Aligned_cols=158 Identities=8% Similarity=0.001 Sum_probs=110.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHH
Q 004352 509 AAKSEDVMETFKTMIEKRCVPNIITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQL 588 (759)
Q Consensus 509 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 588 (759)
.|++++|++.|++..+.. +.+...+..++..+...|++++|...+++..+. .+.+...+..+..+|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL-HPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT-STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 366777777777776653 234667777888888888888888888888775 345677788888888888888888888
Q ss_pred HHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc---CChHHHHHHHHHHHh
Q 004352 589 FRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKT---GGINSGYCLLLENID 665 (759)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~ 665 (759)
|+++.+. .|.+...+..++.+|...|++++|++.++++.+.. +.+...+..++.++... |++++|...++++++
T Consensus 80 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 8888887 77788888888888888888888888888888653 33477788888888888 888888888888887
Q ss_pred CCCCCCHH
Q 004352 666 KGFIPSLS 673 (759)
Q Consensus 666 ~g~~p~~~ 673 (759)
..|+..
T Consensus 157 --~~p~~~ 162 (568)
T 2vsy_A 157 --QGVGAV 162 (568)
T ss_dssp --HTCCCS
T ss_pred --cCCccc
Confidence 556543
No 115
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.08 E-value=7.9e-08 Score=91.63 Aligned_cols=217 Identities=11% Similarity=0.024 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcC--ChhHHHHHHHHhhhCCCCCCHHHHHHHHHHH----HHc---CCh
Q 004352 57 EEMENLLLEMRMDVDDSLLEGVHIGVMRNYGRRG--KVQEAVDVFERMDFYNCEPTVLSYNTIMNIL----VEY---GYF 127 (759)
Q Consensus 57 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~~ 127 (759)
++|+.++..++..+|. ...+|+.-..++...| ++++++.+++.+...+ +.+..+|+.-..++ ... +++
T Consensus 50 ~~aL~~t~~~L~~nP~--~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 50 ERALHITELGINELAS--HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp HHHHHHHHHHHHHCTT--CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred HHHHHHHHHHHHHCcH--HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCH
Confidence 3455555555555554 4445555555554444 5555555555554433 23333444433333 333 445
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChh--hHHHHHhhchhCCCCCCHHhHHHHHHHHHhcCC------hhH
Q 004352 128 SQVHKVYMRMRNKGIVPDVYTFVIRIKSFCRTRRPH--VALRLLKNMPSQGFEPNAVAYCTLIAGFYEENH------NVE 199 (759)
Q Consensus 128 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~ 199 (759)
++++.+++.+.+.. +-+..+|....-++.+.|.++ ++++.++.+.+.+ +.|..+|+--...+...+. +++
T Consensus 127 ~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 127 YREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHH
Confidence 55555555555432 224444444444444445444 5555555555544 3344445444444444333 555
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCh-hHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004352 200 AYELFDEMLGMGISPDIATFNKLIHTLCKKGNV-RESEKLFNKVLKRG--VSPNLFTFNMFIQGLCRKGAISEAISLLDS 276 (759)
Q Consensus 200 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 276 (759)
+++.+++++...+. |...|+.+...+.+.|+. +.+..+...+.+.+ -..+...+..++..|.+.|+.++|.++++.
T Consensus 205 El~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 205 ELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp HHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 55555555554322 455555555555555542 22334444443322 122445555556666666666666666666
Q ss_pred Hhh
Q 004352 277 LGR 279 (759)
Q Consensus 277 ~~~ 279 (759)
+..
T Consensus 284 l~~ 286 (306)
T 3dra_A 284 LKS 286 (306)
T ss_dssp HHH
T ss_pred HHh
Confidence 553
No 116
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.05 E-value=2.9e-09 Score=114.27 Aligned_cols=153 Identities=12% Similarity=0.021 Sum_probs=120.0
Q ss_pred cCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHH
Q 004352 544 AHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEK 623 (759)
Q Consensus 544 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 623 (759)
.|++++|...++++.+. .+.+...+..+...|...|++++|++.|+++.+. .|.+...+..++.+|...|++++|++
T Consensus 2 ~g~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH-RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 47889999999999876 3557888999999999999999999999999998 88899999999999999999999999
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhc---CcHHHHHHHHHHHH
Q 004352 624 LFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSL-STIGRVINCLCVD---HRVHEAVGFVHLMV 699 (759)
Q Consensus 624 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~---g~~~~A~~~~~~~~ 699 (759)
.++++.+.. +.+...+..++.++...|++++|+..++++++ +.|+. ..+..+...+... |+.++|.+.++++.
T Consensus 79 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 79 LLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQ--LLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 999999763 34588999999999999999999999999999 77864 4556677777888 99999999999998
Q ss_pred HCC
Q 004352 700 QKG 702 (759)
Q Consensus 700 ~~~ 702 (759)
+.+
T Consensus 156 ~~~ 158 (568)
T 2vsy_A 156 AQG 158 (568)
T ss_dssp HHT
T ss_pred hcC
Confidence 843
No 117
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.03 E-value=1e-08 Score=94.13 Aligned_cols=131 Identities=9% Similarity=-0.064 Sum_probs=102.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHH
Q 004352 534 YSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFS 613 (759)
Q Consensus 534 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 613 (759)
+..++..+...|++++|...++++. +++...+..++.+|...|++++|+..|+++... .|.+..++..++.+|.
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHH
Confidence 4456666777788888888877763 456777888888888888888888888888877 6777888888888888
Q ss_pred hcCCHHHHHHHHHHHHHcC--------------CCCC-HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 004352 614 EKLNFYMAEKLFYEMSEKG--------------CPPD-NYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSL 672 (759)
Q Consensus 614 ~~g~~~~A~~~~~~~~~~~--------------~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 672 (759)
..|++++|++.|+++.+.. ..|+ ..++..++.++...|++++|+..++++++ +.|+.
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~ 154 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS--MKSEP 154 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCSG
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH--cCccc
Confidence 8888888888888887642 1111 36788888899999999999999999998 77764
No 118
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.03 E-value=1.6e-09 Score=91.89 Aligned_cols=121 Identities=10% Similarity=-0.024 Sum_probs=99.4
Q ss_pred HHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHH
Q 004352 569 FGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFC 648 (759)
Q Consensus 569 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 648 (759)
...+.+.+...+.+.++ ... .|.+...+..++..+...|++++|+..|+++++.. |.++..|..++.+|.
T Consensus 12 ~~~l~~~~~~~~~l~~a-------l~l--~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~ 81 (151)
T 3gyz_A 12 STAVIDAINSGATLKDI-------NAI--PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQ 81 (151)
T ss_dssp HHHHHHHHHTSCCTGGG-------CCS--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHH-------hCC--CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34455555544444444 333 67788899999999999999999999999999763 345899999999999
Q ss_pred hcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHC
Q 004352 649 KTGGINSGYCLLLENIDKGFIPS-LSTIGRVINCLCVDHRVHEAVGFVHLMVQK 701 (759)
Q Consensus 649 ~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 701 (759)
..|++++|+..|+++++ +.|+ ...+..+..++...|++++|+..|+++.+.
T Consensus 82 ~~g~~~~Ai~~~~~al~--l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 82 IKEQFQQAADLYAVAFA--LGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HTTCHHHHHHHHHHHHH--HSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHh--hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999 8886 455567777889999999999999999983
No 119
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.01 E-value=2.6e-09 Score=104.17 Aligned_cols=97 Identities=9% Similarity=-0.013 Sum_probs=44.2
Q ss_pred HHHHHHHHHHccCChhhHHHHHHHHHHccCCCC----chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CC-C-Hh
Q 004352 568 AFGTLINGFCNSGDLDGAYQLFRRMEDQYKISH----TTATYNIMINAFSEKLNFYMAEKLFYEMSEKGC---PP-D-NY 638 (759)
Q Consensus 568 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~p-~-~~ 638 (759)
++..+..+|...|++++|+..|++..+...... ...++..++.+|.. |++++|+..|+++++..- .+ . ..
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~ 156 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAE 156 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHH
Confidence 344444455555555555555555443311111 12344445555544 555555555555443210 00 0 23
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004352 639 TYRIMIDSFCKTGGINSGYCLLLENID 665 (759)
Q Consensus 639 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 665 (759)
++..++.+|...|++++|+.+|+++++
T Consensus 157 ~~~~lg~~~~~~g~~~~A~~~~~~al~ 183 (307)
T 2ifu_A 157 LIGKASRLLVRQQKFDEAAASLQKEKS 183 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445555555555555555555555554
No 120
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.00 E-value=5.7e-09 Score=101.77 Aligned_cols=185 Identities=11% Similarity=0.083 Sum_probs=119.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCC---CC--ChhcHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCc-cHHHHHHHHH
Q 004352 505 GLCKAAKSEDVMETFKTMIEKRC---VP--NIITYSILGESLCKAHKITEAFNLLEEMENK----GLTL-DTVAFGTLIN 574 (759)
Q Consensus 505 ~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~ 574 (759)
.|...|++++|...|.+...... .+ -..++..++.+|...|++++|+..+++.++. |.+. ...++..+..
T Consensus 45 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 124 (307)
T 2ifu_A 45 AFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGK 124 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44555666666666665544210 00 1235666667777777777777777776542 1111 2356777888
Q ss_pred HHHccCChhhHHHHHHHHHHccCCCC----chhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HhhHHHHHH
Q 004352 575 GFCNSGDLDGAYQLFRRMEDQYKISH----TTATYNIMINAFSEKLNFYMAEKLFYEMSEK----GCPPD-NYTYRIMID 645 (759)
Q Consensus 575 ~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~ 645 (759)
+|.. |++++|+..|+++.+...... ...++..++.+|...|++++|+..|+++++. +..+. ..++..++.
T Consensus 125 ~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~ 203 (307)
T 2ifu_A 125 LMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVL 203 (307)
T ss_dssp HHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Confidence 8888 999999999998876521111 1467888899999999999999999998753 11111 236677777
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCC---HHH---HHHHHHHHHhcCcHHHHHHH
Q 004352 646 SFCKTGGINSGYCLLLENIDKGFIPS---LST---IGRVINCLCVDHRVHEAVGF 694 (759)
Q Consensus 646 ~~~~~g~~~~A~~~~~~~~~~g~~p~---~~~---~~~l~~~~~~~g~~~~A~~~ 694 (759)
++...|++++|+..|++++ . .|+ ... ...++.. +..|+.+.+.++
T Consensus 204 ~~~~~g~~~~A~~~~~~al-~--~p~~~~~~e~~~l~~l~~~-~~~~d~~~~~~~ 254 (307)
T 2ifu_A 204 VQLHRADYVAAQKCVRESY-S--IPGFSGSEDCAALEDLLQA-YDEQDEEQLLRV 254 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHT-T--STTSTTSHHHHHHHHHHHH-HHTTCHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHh-C--CCCCCCCHHHHHHHHHHHH-HHhcCHHHHHHH
Confidence 8888899999999999988 3 342 111 2222322 466777666663
No 121
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.97 E-value=2.3e-09 Score=91.15 Aligned_cols=104 Identities=9% Similarity=-0.028 Sum_probs=75.3
Q ss_pred cHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 004352 565 DTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMI 644 (759)
Q Consensus 565 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 644 (759)
+...+..+...+...|++++|+..|+++... .|.+...|..++.++...|++++|+..|+++++.. +.++..+..++
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg 96 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAA 96 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHH
Confidence 4555666777777777788887777777777 67777777777777777777877877777777552 33467777777
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 004352 645 DSFCKTGGINSGYCLLLENIDKGFIPSLS 673 (759)
Q Consensus 645 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 673 (759)
.+|...|++++|+..|+++++ +.|+++
T Consensus 97 ~~~~~~g~~~~A~~~~~~al~--~~p~~~ 123 (148)
T 2vgx_A 97 ECLLQXGELAEAESGLFLAQE--LIANXP 123 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HHTTCG
T ss_pred HHHHHcCCHHHHHHHHHHHHH--HCcCCC
Confidence 777777888888877777777 555433
No 122
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.96 E-value=1.4e-07 Score=90.32 Aligned_cols=184 Identities=6% Similarity=-0.095 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccC--ChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCC-HHHHHH
Q 004352 547 ITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSG--DLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLN-FYMAEK 623 (759)
Q Consensus 547 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~ 623 (759)
+++++.+++.++.. .|-+..+|+.-..++...| .+++++.+++++.+. .|.+..+|+....++...|. ++++++
T Consensus 90 l~~EL~~~~~~L~~-~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~--dprNy~AW~~R~~vl~~l~~~~~eel~ 166 (331)
T 3dss_A 90 VKAELGFLESCLRV-NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELA 166 (331)
T ss_dssp HHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 45667777777664 3446666666666666666 367777777777777 77777777777777777776 577777
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHHhc--------------CChHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhc---
Q 004352 624 LFYEMSEKGCPPDNYTYRIMIDSFCKT--------------GGINSGYCLLLENIDKGFIPSLSTIG-RVINCLCVD--- 685 (759)
Q Consensus 624 ~~~~~~~~~~~p~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~g~~p~~~~~~-~l~~~~~~~--- 685 (759)
.+.++++.. +-|...|+....++... +.+++++.++.+++. ..|++.+.. .+...+...
T Consensus 167 ~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~--~~P~d~SaW~Y~r~ll~~~~~~ 243 (331)
T 3dss_A 167 FTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGAGSGR 243 (331)
T ss_dssp HHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHSSSCG
T ss_pred HHHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccCc
Confidence 777777653 34567777766665554 446778888888877 667544443 333334333
Q ss_pred --------CcHHHHHHHHHHHHHCCCCCc-hHHHH--H---hc--cccccccchHHHHHHHhcCCCchH
Q 004352 686 --------HRVHEAVGFVHLMVQKGIVPE-VVNTI--F---EA--DKREVASPKIVVEDLLKKSHITYY 738 (759)
Q Consensus 686 --------g~~~~A~~~~~~~~~~~~~p~-~~~~~--~---~~--~~~~~~~a~~~~~~~~~~~~~~~~ 738 (759)
+..+++++.++++.+ +.|+ .|+-+ + .. ..|..++....++++.+.||.-.-
T Consensus 244 ~~~~~~~~~~l~~el~~~~elle--~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~ 310 (331)
T 3dss_A 244 CELSVEKSTVLQSELESCKELQE--LEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA 310 (331)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHH
T ss_pred cccchHHHHHHHHHHHHHHHHHh--hCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhh
Confidence 357788888888877 6677 33221 1 11 345666777888888887776443
No 123
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.94 E-value=1.3e-07 Score=91.61 Aligned_cols=164 Identities=10% Similarity=-0.036 Sum_probs=123.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC-CCccH----HHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCc----hhhHHH
Q 004352 537 LGESLCKAHKITEAFNLLEEMENKG-LTLDT----VAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHT----TATYNI 607 (759)
Q Consensus 537 l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~ 607 (759)
.+..+...|++++|..++++..+.. ..++. ..+..+...+...|++++|+..|+++.......++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 4566778899999999999988742 12222 12335677778888999999999999885323333 336899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc-----CCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCC-HHHHH
Q 004352 608 MINAFSEKLNFYMAEKLFYEMSEK-----GCPPD-NYTYRIMIDSFCKTGGINSGYCLLLENIDK----GFIPS-LSTIG 676 (759)
Q Consensus 608 l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~-~~~~~ 676 (759)
++.+|...|++++|+.+|+++++. +..+. ..++..++.+|...|++++|+.+++++++. +..+. ...+.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 999999999999999999998841 11222 458899999999999999999999998861 22233 45566
Q ss_pred HHHHHHHhcC-cHHHHHHHHHHHHH
Q 004352 677 RVINCLCVDH-RVHEAVGFVHLMVQ 700 (759)
Q Consensus 677 ~l~~~~~~~g-~~~~A~~~~~~~~~ 700 (759)
.+..++...| .+++|.+.++++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 6777778899 57999999999875
No 124
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.94 E-value=5.3e-09 Score=96.93 Aligned_cols=186 Identities=8% Similarity=-0.065 Sum_probs=109.8
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhcHHHH-------HHHHHhcCCHHHHHHHHHHHHHCCCCccHHH--H---------
Q 004352 508 KAAKSEDVMETFKTMIEKRCVPNIITYSIL-------GESLCKAHKITEAFNLLEEMENKGLTLDTVA--F--------- 569 (759)
Q Consensus 508 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~--------- 569 (759)
..++...|.+.|.++.... +-....|..+ ..++...++..+++..+..... +.|+... +
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 5677777777777777763 2245566655 4444444444444444444333 3333221 1
Q ss_pred -----------HHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--
Q 004352 570 -----------GTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPD-- 636 (759)
Q Consensus 570 -----------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-- 636 (759)
..++.++...|++++|.+.|+.+... .|.+. ....++..+.+.+++++|+..|+...+.. .|.
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~ 170 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLA 170 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccH
Confidence 12445666677777777777766654 45455 66666667777777777777776554321 111
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-H-HHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 004352 637 NYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPS-L-STIGRVINCLCVDHRVHEAVGFVHLMVQ 700 (759)
Q Consensus 637 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 700 (759)
..++..++.++...|++++|+..|+++......|. . ........++.+.|+.++|..+|+++..
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a 236 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT 236 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 23566677777777777777777777764222253 2 3445555566677777777777777776
No 125
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.92 E-value=2.8e-08 Score=86.85 Aligned_cols=130 Identities=11% Similarity=-0.008 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 004352 566 TVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMID 645 (759)
Q Consensus 566 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 645 (759)
...+..++..+...|++++|...|+++... .|.+..++..++.++...|++++|+..++++.+.. +.+..+|..++.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~ 89 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 345677778888899999999999999887 77888889999999999999999999999988763 445788888999
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHH---HHHHHHHhcCcHHHHHHHHHHHHH
Q 004352 646 SFCKTGGINSGYCLLLENIDKGFIPSLSTIG---RVINCLCVDHRVHEAVGFVHLMVQ 700 (759)
Q Consensus 646 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~ 700 (759)
++...|++++|+..++++++ +.|+..... .....+...|++++|++.+++...
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVK--VKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999999999998 667544332 233335678999999998887654
No 126
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.92 E-value=1.4e-07 Score=91.20 Aligned_cols=166 Identities=10% Similarity=-0.040 Sum_probs=113.5
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcc-----HHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCc----hh
Q 004352 533 TYSILGESLCKAHKITEAFNLLEEMENKGLTLD-----TVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHT----TA 603 (759)
Q Consensus 533 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~ 603 (759)
.+...+..+...|++++|...++...+...... ...+..+...+...|++++|+..++++........+ ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344455666777788888887777766421111 122344566677788888888888888764221111 44
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCC----HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC------
Q 004352 604 TYNIMINAFSEKLNFYMAEKLFYEMSEK--GCPPD----NYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPS------ 671 (759)
Q Consensus 604 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~------ 671 (759)
+++.++.+|...|++++|+..|+++.+. ..+.+ ..++..++.+|...|++++|+.+++++++ +.++
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~--~~~~~~~~~~ 234 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIE--ISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHTTBCSS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHH--HHHhcCcHHH
Confidence 7788888888899999999998887721 11111 25788888899999999999999998876 2222
Q ss_pred -HHHHHHHHHHHHhcCcHHHH-HHHHHHHHH
Q 004352 672 -LSTIGRVINCLCVDHRVHEA-VGFVHLMVQ 700 (759)
Q Consensus 672 -~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 700 (759)
...+..+..++...|++++| ...++++..
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 44556677777888999999 777887754
No 127
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.92 E-value=7.5e-09 Score=91.64 Aligned_cols=126 Identities=6% Similarity=0.047 Sum_probs=78.2
Q ss_pred hcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHH-HHhcCCH--H
Q 004352 543 KAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINA-FSEKLNF--Y 619 (759)
Q Consensus 543 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~ 619 (759)
..|++++|...++...+. .+.+...+..++.+|...|++++|+..|+++... .|.+...+..++.+ +...|++ +
T Consensus 22 ~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRA-NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp -----CCCCHHHHHHHHH-CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hccCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcchH
Confidence 345666666666666654 2445566666666677777777777777776666 55666666666666 5566666 7
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH
Q 004352 620 MAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSLST 674 (759)
Q Consensus 620 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 674 (759)
+|+..++++++.. +.+...+..++.++...|++++|+..++++++ ..|++..
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~ 150 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMD--LNSPRIN 150 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCCTTSC
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh--hCCCCcc
Confidence 7777777766542 22356666666677777777777777777776 5555433
No 128
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.92 E-value=2.4e-08 Score=82.41 Aligned_cols=111 Identities=14% Similarity=0.022 Sum_probs=88.0
Q ss_pred cHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 004352 565 DTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMI 644 (759)
Q Consensus 565 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 644 (759)
+...+...+..+...|++++|+..|+++... .|.+...|..++.++...|++++|+..++++++.. +.+...|..++
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 79 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKA 79 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 3456677778888888888888888888887 78888888888888888888888888888888653 33477888888
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCC------CCHHHHHHHHH
Q 004352 645 DSFCKTGGINSGYCLLLENIDKGFI------PSLSTIGRVIN 680 (759)
Q Consensus 645 ~~~~~~g~~~~A~~~~~~~~~~g~~------p~~~~~~~l~~ 680 (759)
.++...|++++|+..++++++ +. |++......+.
T Consensus 80 ~~~~~~~~~~~A~~~~~~al~--~~p~~~~~p~~~~~~~~l~ 119 (126)
T 3upv_A 80 TAQIAVKEYASALETLDAART--KDAEVNNGSSAREIDQLYY 119 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HHHHHHTTTTHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHHH--hCcccCCchhHHHHHHHHH
Confidence 888888899999888888888 66 66655544443
No 129
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.91 E-value=4.2e-07 Score=87.07 Aligned_cols=185 Identities=6% Similarity=-0.077 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCC-hhhHHHH
Q 004352 512 SEDVMETFKTMIEKRCVPNIITYSILGESLCKAH--KITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGD-LDGAYQL 588 (759)
Q Consensus 512 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~ 588 (759)
+++++.+++.++... +-+..+|..-..++...+ .+++++.+++.+.+. .+-+..+|+.-..++...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~-dprNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA-DERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 456677777777654 235666666666666666 377777777777775 34466666666666666676 4778888
Q ss_pred HHHHHHccCCCCchhhHHHHHHHHHhc--------------CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc----
Q 004352 589 FRRMEDQYKISHTTATYNIMINAFSEK--------------LNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKT---- 650 (759)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---- 650 (759)
++.+++. .|.+..+|+....++... +.++++++.+.+++... |-|...|+.+-..+...
T Consensus 168 ~~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~ 244 (331)
T 3dss_A 168 TDSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRC 244 (331)
T ss_dssp HHHHHHH--CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGG
T ss_pred HHHHHHH--CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCcc
Confidence 8888777 777777887777776655 45778888888887653 44577787776666555
Q ss_pred -------CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-----HhcCcHHHHHHHHHHHHHCCCCCc
Q 004352 651 -------GGINSGYCLLLENIDKGFIPSLSTIGRVINCL-----CVDHRVHEAVGFVHLMVQKGIVPE 706 (759)
Q Consensus 651 -------g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~-----~~~g~~~~A~~~~~~~~~~~~~p~ 706 (759)
+.+++++..++++++ +.|++. |..+..++ -..|..++...++.++.+ ++|.
T Consensus 245 ~~~~~~~~~l~~el~~~~elle--~~pd~~-w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~Dp~ 307 (331)
T 3dss_A 245 ELSVEKSTVLQSELESCKELQE--LEPENK-WCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPM 307 (331)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHH--HCTTCH-HHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH--HCGG
T ss_pred ccchHHHHHHHHHHHHHHHHHh--hCcccc-hHHHHHHHHHHhhcccccHHHHHHHHHHHHH--hCcc
Confidence 457888999999998 788752 32211111 246788888889999887 7776
No 130
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.90 E-value=3.6e-09 Score=89.97 Aligned_cols=109 Identities=10% Similarity=-0.058 Sum_probs=94.4
Q ss_pred HHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 004352 587 QLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCLLLENIDK 666 (759)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 666 (759)
..|+++... .|.+...+..++..+...|++++|+..|+++++.. +.+...|..++.+|...|++++|+..|+++++
T Consensus 8 ~~~~~al~~--~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~- 83 (148)
T 2vgx_A 8 GTIAMLNEI--SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV- 83 (148)
T ss_dssp CSHHHHTTC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred hhHHHHHcC--CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-
Confidence 456666666 67788899999999999999999999999999763 44688999999999999999999999999999
Q ss_pred CCCCCH-HHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 004352 667 GFIPSL-STIGRVINCLCVDHRVHEAVGFVHLMVQ 700 (759)
Q Consensus 667 g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 700 (759)
+.|++ ..+..+..++...|++++|.+.++++.+
T Consensus 84 -l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 84 -MDIXEPRFPFHAAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp -HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -cCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77864 4556677777899999999999999987
No 131
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.90 E-value=3.5e-08 Score=81.05 Aligned_cols=109 Identities=8% Similarity=0.010 Sum_probs=84.2
Q ss_pred hcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHH
Q 004352 532 ITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINA 611 (759)
Q Consensus 532 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 611 (759)
..+...+..+.+.|++++|+..|+++++. .|.+...|..+..+|...|++++|+..|+++++. .|.+..+|..++.+
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~ 90 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKR-DPENAILYSNRAACLTKLMEFQRALDDCDTCIRL--DSKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh--hhhhhHHHHHHHHH
Confidence 35566777778888888888888887775 3557777888888888888888888888888887 77788888888888
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCC-HhhHHHHHH
Q 004352 612 FSEKLNFYMAEKLFYEMSEKGCPPD-NYTYRIMID 645 (759)
Q Consensus 612 ~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~ 645 (759)
+...|++++|++.|+++++. .|+ ...+..+..
T Consensus 91 ~~~~~~~~~A~~~~~~al~l--~P~~~~a~~~l~~ 123 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQV--DPSNEEAREGVRN 123 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH--CcCCHHHHHHHHH
Confidence 88888888888888888865 454 555555544
No 132
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.90 E-value=2e-07 Score=90.23 Aligned_cols=168 Identities=11% Similarity=0.029 Sum_probs=121.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-----hhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---Ccc--HH
Q 004352 498 TYNSLLNGLCKAAKSEDVMETFKTMIEKRCVPN-----IITYSILGESLCKAHKITEAFNLLEEMENKGL---TLD--TV 567 (759)
Q Consensus 498 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~ 567 (759)
.+...+..+...|++++|.+.+++..+...... ...+..++..+...|++++|...++++..... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344456667778888888888877776532111 01234456667778899999999988875311 111 45
Q ss_pred HHHHHHHHHHccCChhhHHHHHHHHHHccC-CCCc----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCCC-H
Q 004352 568 AFGTLINGFCNSGDLDGAYQLFRRMEDQYK-ISHT----TATYNIMINAFSEKLNFYMAEKLFYEMSEKG----CPPD-N 637 (759)
Q Consensus 568 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~p~-~ 637 (759)
+++.++..|...|++++|+..|+++.+... .|.+ ..++..++.+|...|++++|+..++++++.. .... .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 788889999999999999999999873211 3332 2588899999999999999999999987531 1111 6
Q ss_pred hhHHHHHHHHHhcCChHHH-HHHHHHHHh
Q 004352 638 YTYRIMIDSFCKTGGINSG-YCLLLENID 665 (759)
Q Consensus 638 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 665 (759)
.+|..++.+|...|++++| ..++++++.
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 7889999999999999999 888998875
No 133
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.89 E-value=1e-08 Score=98.30 Aligned_cols=194 Identities=9% Similarity=-0.030 Sum_probs=136.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHH
Q 004352 495 DVITYNSLLNGLCKAAKSEDVMETFKTMIEKRCVPNIITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLIN 574 (759)
Q Consensus 495 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 574 (759)
+...+..+...+...|++++|+..|++.++.. +.+...+..++.++...|++++|...++++++. .+.+...+..++.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALEL-DGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CCCCHHHHHHHHH
Confidence 45667777788888888888888888888763 336777888888888899999999999988876 3557778888889
Q ss_pred HHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChH
Q 004352 575 GFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGIN 654 (759)
Q Consensus 575 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 654 (759)
+|...|++++|+..|+++.+. .|.+...+...+...... .++... ........+++......+... ..|+++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~i~~~l~~l--~~~~~~ 152 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL--AKEQRLNFGDDIPSALRI---AKKKRW-NSIEERRIHQESELHSYLTRL--IAAERE 152 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--HHHTTCCCCSHHHHHHHH---HHHHHH-HHHHHTCCCCCCHHHHHHHHH--HHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CccchhhHHHHHHHHHHH---HHHHHH-HHHHHHHHhhhHHHHHHHHHH--HHHHHH
Confidence 999999999999999988876 443332222222222211 112222 222223345556655555443 379999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHH-Hh-cCcHHHHHHHHHHHHH
Q 004352 655 SGYCLLLENIDKGFIPSLSTIGRVINCL-CV-DHRVHEAVGFVHLMVQ 700 (759)
Q Consensus 655 ~A~~~~~~~~~~g~~p~~~~~~~l~~~~-~~-~g~~~~A~~~~~~~~~ 700 (759)
+|+..++++++ +.|++.....-+..+ .. .+.+++|.++|+++.+
T Consensus 153 ~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 153 RELEECQRNHE--GHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHTTTSGGGT--TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHhhhc--cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999999998 789877665555544 33 3789999999998865
No 134
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.87 E-value=2.5e-08 Score=82.15 Aligned_cols=106 Identities=13% Similarity=0.101 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCC----HhhH
Q 004352 567 VAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKG--CPPD----NYTY 640 (759)
Q Consensus 567 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~----~~~~ 640 (759)
..+..++..+.+.|++++|+..|+++++. .|.+..+|..++.+|...|++++|++.++++++.. ..++ ..+|
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 44667777888888888888888888877 77788888888888888888888888888877531 0111 2356
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 004352 641 RIMIDSFCKTGGINSGYCLLLENIDKGFIPSLSTIG 676 (759)
Q Consensus 641 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 676 (759)
..++.++...|++++|+..|+++++ ..|++....
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~ 120 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLS--EFRDPELVK 120 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHHH
Confidence 6777778888888888888888887 667655443
No 135
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.87 E-value=1.2e-06 Score=84.33 Aligned_cols=175 Identities=10% Similarity=-0.014 Sum_probs=92.7
Q ss_pred HhcCCChHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhCC-ChHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhc-C-
Q 004352 14 VKHQKNPLTALEMFNSVKREDGFKHTLLTYKYMIDKLGFHG-NFEEMENLLLEMRMDVDDSLLEGVHIGVMRNYGRR-G- 90 (759)
Q Consensus 14 l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g- 90 (759)
+...+..++|++.++.++...+. ...+|..-..++...| .+++++..++.++..+|. +..+|+....++... +
T Consensus 64 ~~~~e~se~AL~lt~~~L~~nP~--~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK--ny~aW~hR~wlL~~l~~~ 139 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMNPA--HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK--SYQVWHHRLLLLDRISPQ 139 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHHHHCCS
T ss_pred HHhCCCCHHHHHHHHHHHHhCch--hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHhcCC
Confidence 33444455666666666554322 3444555555555555 366666666666666665 555666555555544 4
Q ss_pred ChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCChh--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC-
Q 004352 91 KVQEAVDVFERMDFYNCEPTVLSYNTIMNILVEYGYFS--------QVHKVYMRMRNKGIVPDVYTFVIRIKSFCRTRR- 161 (759)
Q Consensus 91 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 161 (759)
++++++++++++.... +.|..+|+...-++.+.+.++ ++++.++++++.. +.|..+|+.....+.+.++
T Consensus 140 ~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~ 217 (349)
T 3q7a_A 140 DPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGA 217 (349)
T ss_dssp CCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTC
T ss_pred ChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcccc
Confidence 5666666666666444 445555655555544444444 5666666665543 2355555555555555444
Q ss_pred ------hhhHHHHHhhchhCCCCCCHHhHHHHHHHHHhcC
Q 004352 162 ------PHVALRLLKNMPSQGFEPNAVAYCTLIAGFYEEN 195 (759)
Q Consensus 162 ------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 195 (759)
++++++.++++...+ +-|..+|+-+-..+.+.|
T Consensus 218 ~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~ 256 (349)
T 3q7a_A 218 ETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFS 256 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred ccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 344555555544443 344455544444444333
No 136
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.86 E-value=8.7e-08 Score=87.78 Aligned_cols=130 Identities=12% Similarity=0.006 Sum_probs=99.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHc
Q 004352 499 YNSLLNGLCKAAKSEDVMETFKTMIEKRCVPNIITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCN 578 (759)
Q Consensus 499 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 578 (759)
+..+...+...|++++|+..|++.. .|+...+..++.++...|++++|...++++.+. .+.+...+..++.+|..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINR-DKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CccchHHHHHHHHHHHH
Confidence 4455666677788888887777663 456677777888888888888888888887775 34567777888888888
Q ss_pred cCChhhHHHHHHHHHHccCCCCch----------------hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 004352 579 SGDLDGAYQLFRRMEDQYKISHTT----------------ATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDN 637 (759)
Q Consensus 579 ~g~~~~A~~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 637 (759)
.|++++|+..|+++... .|.+. .++..++.++...|++++|+..++++.+. .|+.
T Consensus 84 ~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~ 154 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQ--LRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM--KSEP 154 (213)
T ss_dssp TTCHHHHHHHHHHHHHT--TTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCSG
T ss_pred cccHHHHHHHHHHHHHh--CCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc--Cccc
Confidence 88888888888888876 44443 78889999999999999999999999854 5653
No 137
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.85 E-value=5.9e-08 Score=89.96 Aligned_cols=194 Identities=9% Similarity=-0.032 Sum_probs=144.6
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-------HHHHHhcCCHHHHHHHHHHHHHcCCCCCh--------------
Q 004352 473 KQLKMEIAIEILNTMWSHGVTPDVITYNSL-------LNGLCKAAKSEDVMETFKTMIEKRCVPNI-------------- 531 (759)
Q Consensus 473 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------------- 531 (759)
..++...|.+.|.++....+ -....|..+ ..++...++..+++..++.-+.. .|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP-~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l--~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDE-SACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI--SMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--CGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhCh-hhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--ChhhhhhhhccCCccccc
Confidence 68999999999999998742 257788887 46666666666776666665542 2211
Q ss_pred --------hcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCc--
Q 004352 532 --------ITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHT-- 601 (759)
Q Consensus 532 --------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-- 601 (759)
.....+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+..... .++.
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~--~d~~~~ 170 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW--PDKFLA 170 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC--SCHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc--CCcccH
Confidence 123346677888999999999999887643 43336667777889999999999999866543 1121
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 004352 602 TATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPD--NYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSLSTIG 676 (759)
Q Consensus 602 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 676 (759)
..++..++.++...|++++|+..|++.......|. ...+...+.++.+.|+.++|...|+++.. ..|+ ....
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a--~~P~-~~~~ 244 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT--THPE-PKVA 244 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSCC-HHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCc-HHHH
Confidence 34788899999999999999999999985433254 45778888899999999999999999999 7788 4433
No 138
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.85 E-value=1.6e-08 Score=85.56 Aligned_cols=106 Identities=7% Similarity=-0.090 Sum_probs=78.4
Q ss_pred cHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 004352 565 DTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMI 644 (759)
Q Consensus 565 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 644 (759)
+...+..+...+...|++++|+..|+++... .|.+...|..++.++...|++++|+..|+++++.. +.++..+..++
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 93 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAA 93 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHH
Confidence 4445666677777788888888888888777 77777888888888888888888888888877653 33467777777
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHH
Q 004352 645 DSFCKTGGINSGYCLLLENIDKGFIPSLSTI 675 (759)
Q Consensus 645 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 675 (759)
.++...|++++|+..|+++++ +.|+++.+
T Consensus 94 ~~~~~~g~~~~A~~~~~~al~--~~p~~~~~ 122 (142)
T 2xcb_A 94 ECHLQLGDLDGAESGFYSARA--LAAAQPAH 122 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HHHTCGGG
T ss_pred HHHHHcCCHHHHHHHHHHHHH--hCCCCcch
Confidence 888888888888888888877 55554433
No 139
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.85 E-value=8e-08 Score=83.85 Aligned_cols=130 Identities=9% Similarity=-0.016 Sum_probs=99.0
Q ss_pred hcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHH
Q 004352 532 ITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINA 611 (759)
Q Consensus 532 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 611 (759)
..+..++..+...|++++|...+++..+. .+.+..++..++.++...|++++|+..++++... .|.+...+..++.+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIEL-NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 34566677777788888888888887775 3446777888888888888888888888888887 67788888888888
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHH--HHHHhcCChHHHHHHHHHHHh
Q 004352 612 FSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMI--DSFCKTGGINSGYCLLLENID 665 (759)
Q Consensus 612 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~ 665 (759)
+...|++++|+..++++.+.. +.+...+..+. ..+...|++++|+..+.+...
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 888888999988888888653 33455554333 347778888888888887653
No 140
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.83 E-value=8.2e-07 Score=85.82 Aligned_cols=98 Identities=10% Similarity=-0.069 Sum_probs=55.5
Q ss_pred HHHHHHHHHHccCChhhHHHHHHHHHHcc-----CCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-H
Q 004352 568 AFGTLINGFCNSGDLDGAYQLFRRMEDQY-----KISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEK----GCPPD-N 637 (759)
Q Consensus 568 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~ 637 (759)
+++.++.+|...|++++|+..|+++.+.. ..+....++..++.+|...|++++|+..++++++. +..+. .
T Consensus 157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~ 236 (293)
T 3u3w_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence 35555555555555555555555554210 11222345566666666666666666666665532 11222 4
Q ss_pred hhHHHHHHHHHhcCC-hHHHHHHHHHHHh
Q 004352 638 YTYRIMIDSFCKTGG-INSGYCLLLENID 665 (759)
Q Consensus 638 ~~~~~l~~~~~~~g~-~~~A~~~~~~~~~ 665 (759)
.+|..++.++...|+ +++|+..+++++.
T Consensus 237 ~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 567777777777773 5777777777664
No 141
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.83 E-value=5.6e-08 Score=81.08 Aligned_cols=106 Identities=13% Similarity=0.070 Sum_probs=74.7
Q ss_pred CccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHH
Q 004352 563 TLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRI 642 (759)
Q Consensus 563 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 642 (759)
+.+...+..++..+...|++++|+..|+++... .|.+..++..++.++...|++++|+..++++.+.. +.+..++..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 89 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTR 89 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHH
Confidence 344556667777777777777777777777766 66667777777777777777777777777777652 334667777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 004352 643 MIDSFCKTGGINSGYCLLLENIDKGFIPSLS 673 (759)
Q Consensus 643 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 673 (759)
++.++...|++++|+..++++++ ..|+..
T Consensus 90 la~~~~~~~~~~~A~~~~~~~~~--~~p~~~ 118 (133)
T 2lni_A 90 KAAALEAMKDYTKAMDVYQKALD--LDSSCK 118 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HCGGGT
T ss_pred HHHHHHHHhhHHHHHHHHHHHHH--hCCCch
Confidence 77777777777777777777777 556543
No 142
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.82 E-value=9.8e-09 Score=98.39 Aligned_cols=190 Identities=10% Similarity=-0.043 Sum_probs=131.3
Q ss_pred ChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHH
Q 004352 530 NIITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMI 609 (759)
Q Consensus 530 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 609 (759)
+...+..++..+...|++++|...|+++++. .+.+...+..+..+|...|++++|+..++++.+. .|.+...+..++
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR-NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 4566778888899999999999999999886 3557888899999999999999999999999988 888899999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcH
Q 004352 610 NAFSEKLNFYMAEKLFYEMSEKGCPPD-NYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSLSTIGRVINCLCVDHRV 688 (759)
Q Consensus 610 ~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~ 688 (759)
.+|...|++++|+..|+++.+. .|+ ...+...++...+. .++......... ..|+...+...+..+ ..|++
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~~~~~~~---~~~~~~~~~~~~--~~~~~~~i~~~l~~l-~~~~~ 151 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSL--AKEQRLNFGDDIPSALRI---AKKKRWNSIEER--RIHQESELHSYLTRL-IAAER 151 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--HHHTTCCCCSHHHHHHHH---HHHHHHHHHHHT--CCCCCCHHHHHHHHH-HHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CccchhhHHHHHHHHHHH---HHHHHHHHHHHH--HHhhhHHHHHHHHHH-HHHHH
Confidence 9999999999999999998865 343 22222222222211 222222222222 334333333333333 37899
Q ss_pred HHHHHHHHHHHHCCCCCchH--HHHHhc----cccccccchHHHHHHHhc
Q 004352 689 HEAVGFVHLMVQKGIVPEVV--NTIFEA----DKREVASPKIVVEDLLKK 732 (759)
Q Consensus 689 ~~A~~~~~~~~~~~~~p~~~--~~~~~~----~~~~~~~a~~~~~~~~~~ 732 (759)
++|++.++++.+ ..|+.. ..-+.. ..+.+++|..+++++.+.
T Consensus 152 ~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 152 ERELEECQRNHE--GHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHTTTSGGGT--TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHHhhhc--cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999998876 566621 111111 346677888888877664
No 143
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.82 E-value=1.7e-06 Score=83.11 Aligned_cols=184 Identities=8% Similarity=-0.101 Sum_probs=140.7
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcC-ChhHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 004352 42 TYKYMIDKLGFHGNFEEMENLLLEMRMDVDDSLLEGVHIGVMRNYGRRG-KVQEAVDVFERMDFYNCEPTVLSYNTIMNI 120 (759)
Q Consensus 42 ~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 120 (759)
.+..+...+...+..++|++++..++..+|. ...+|+....++...| ++++++.+++.+...+ +.+..+|+.-..+
T Consensus 56 ~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~--~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wl 132 (349)
T 3q7a_A 56 AMDYFRAIAAKEEKSERALELTEIIVRMNPA--HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLL 132 (349)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhCch--hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 3344444445556678999999999999998 8889999888888888 5999999999999776 6778889988888
Q ss_pred HHHc-C-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChh--------hHHHHHhhchhCCCCCCHHhHHHHHHH
Q 004352 121 LVEY-G-YFSQVHKVYMRMRNKGIVPDVYTFVIRIKSFCRTRRPH--------VALRLLKNMPSQGFEPNAVAYCTLIAG 190 (759)
Q Consensus 121 ~~~~-~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~A~~~~~~~~~~~~~~~~~~~~~l~~~ 190 (759)
+... + ++++++.+++.+.+.. +.|..+|+...-++.+.|.++ ++++.++++.+.+ +.|..+|+-....
T Consensus 133 L~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~l 210 (349)
T 3q7a_A 133 LDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYL 210 (349)
T ss_dssp HHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 8876 7 8899999999999865 457778887776666666666 7888888888876 5678888887777
Q ss_pred HHhcCC-------hhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 004352 191 FYEENH-------NVEAYELFDEMLGMGISPDIATFNKLIHTLCKKGN 231 (759)
Q Consensus 191 ~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 231 (759)
+.+.++ ++++++.+++++...+. |...|+.+-..+.+.|.
T Consensus 211 L~~l~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 211 RVSRPGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HTTSTTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHhccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCC
Confidence 777665 56777777777765433 66667666665655554
No 144
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.81 E-value=2.3e-08 Score=88.46 Aligned_cols=124 Identities=3% Similarity=0.064 Sum_probs=102.9
Q ss_pred HHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHH-HHhcCCh-
Q 004352 576 FCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDS-FCKTGGI- 653 (759)
Q Consensus 576 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~- 653 (759)
+...|++++|+..++..... .|.+...|..++.+|...|++++|+..|+++.+.. +.+...+..++.+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CC-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcc
Confidence 34678999999999999988 88899999999999999999999999999999763 4457888889988 7899998
Q ss_pred -HHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCc
Q 004352 654 -NSGYCLLLENIDKGFIPSL-STIGRVINCLCVDHRVHEAVGFVHLMVQKGIVPE 706 (759)
Q Consensus 654 -~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 706 (759)
++|+..++++++ ..|+. ..+..+...+...|++++|...++++.+ ..|+
T Consensus 97 ~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~ 147 (177)
T 2e2e_A 97 TAQTRAMIDKALA--LDSNEITALMLLASDAFMQANYAQAIELWQKVMD--LNSP 147 (177)
T ss_dssp CHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCCT
T ss_pred hHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh--hCCC
Confidence 999999999999 77864 4555666677899999999999999988 4444
No 145
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.80 E-value=6.8e-08 Score=80.21 Aligned_cols=118 Identities=9% Similarity=-0.011 Sum_probs=76.3
Q ss_pred cHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 004352 565 DTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMI 644 (759)
Q Consensus 565 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 644 (759)
+...+..++..+...|++++|+..|+++... .|.+...+..++.++...|++++|+..++++.+.. +.+...+..++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~ 87 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHH
Confidence 3445666666677777777777777777766 56666777777777777777777777777776542 33366677777
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCc
Q 004352 645 DSFCKTGGINSGYCLLLENIDKGFIPSLS-TIGRVINCLCVDHR 687 (759)
Q Consensus 645 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~ 687 (759)
.++...|++++|..+++++++ ..|+.. .+..+...+...|+
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALE--LDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCHHHHHHHHHHHHh--cCccchHHHHHHHHHHHHHhc
Confidence 777777777777777777776 556433 33334444444443
No 146
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.80 E-value=2e-08 Score=82.76 Aligned_cols=105 Identities=14% Similarity=0.102 Sum_probs=84.5
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--------
Q 004352 601 TTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSL-------- 672 (759)
Q Consensus 601 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-------- 672 (759)
....+..++..+...|++++|+..|+++++.. |.+..+|..++.+|...|++++|+..++++++ +.|+.
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~a 83 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVE--VGRETRADYKLIA 83 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH--hCcccchhhHHHH
Confidence 45677889999999999999999999999763 33488899999999999999999999999997 55532
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCchH
Q 004352 673 STIGRVINCLCVDHRVHEAVGFVHLMVQKGIVPEVV 708 (759)
Q Consensus 673 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 708 (759)
..+..+...+...|++++|++.+++.+....+|+..
T Consensus 84 ~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~~ 119 (127)
T 4gcn_A 84 KAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELV 119 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCHHHH
Confidence 244556666788999999999999988744445443
No 147
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.80 E-value=1.5e-07 Score=76.33 Aligned_cols=106 Identities=12% Similarity=0.046 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 004352 566 TVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMID 645 (759)
Q Consensus 566 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 645 (759)
...+..++..+...|++++|+..|+++... .|.+...+..++.++...|++++|+..++++.+.. +.+...+..++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 80 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 455667777777888888888888888777 67777788888888888888888888888877653 334777777888
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 004352 646 SFCKTGGINSGYCLLLENIDKGFIPSLSTIG 676 (759)
Q Consensus 646 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 676 (759)
++...|++++|...++++++ ..|+.....
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~ 109 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLK--HEANNPQLK 109 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHT--TCTTCHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH--cCCCCHHHH
Confidence 88888888888888888887 667654443
No 148
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.79 E-value=7.5e-08 Score=94.90 Aligned_cols=131 Identities=8% Similarity=0.010 Sum_probs=100.7
Q ss_pred cHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCc---------------hhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004352 565 DTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHT---------------TATYNIMINAFSEKLNFYMAEKLFYEMS 629 (759)
Q Consensus 565 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 629 (759)
+...+..+...|.+.|++++|+..|+++... .|.+ ..+|..++.+|...|++++|+..+++++
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 223 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL 223 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4456667777777778888888888877776 5555 5788889999999999999999999988
Q ss_pred HcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCcHHHH-HHHHHHHHH
Q 004352 630 EKGCPPDNYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSLSTI-GRVINCLCVDHRVHEA-VGFVHLMVQ 700 (759)
Q Consensus 630 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~-~~l~~~~~~~g~~~~A-~~~~~~~~~ 700 (759)
+.. +.+...|..++.+|...|++++|+..|+++++ +.|++... ..+..++...|+.++| .+.+++|..
T Consensus 224 ~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 224 ELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQ--LYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 763 33578888888999999999999999999998 77865444 4555555778888888 446666654
No 149
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.79 E-value=4.8e-08 Score=88.71 Aligned_cols=157 Identities=11% Similarity=-0.033 Sum_probs=88.0
Q ss_pred hcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccC----CCCchhhHHHHHHHHHhcCCH
Q 004352 543 KAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYK----ISHTTATYNIMINAFSEKLNF 618 (759)
Q Consensus 543 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~ 618 (759)
..|++++|.++++.+... ......++..+...+...|++++|...++++..... .+....++..++.++...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 345666666644443321 223445566666666666666666666666655211 223345566667777777777
Q ss_pred HHHHHHHHHHHHc----CCCC-C-HhhHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCH----HHHHHHHHHHHhcCc
Q 004352 619 YMAEKLFYEMSEK----GCPP-D-NYTYRIMIDSFCKTGGINSGYCLLLENIDKG-FIPSL----STIGRVINCLCVDHR 687 (759)
Q Consensus 619 ~~A~~~~~~~~~~----~~~p-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~p~~----~~~~~l~~~~~~~g~ 687 (759)
++|+..++++.+. +-.| . ..++..++.++...|++++|+.+++++++.. -.++. ..+..+...+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 7777777665542 1011 1 3456667777777777777777777776410 01111 122344555567777
Q ss_pred HHHHHHHHHHHHH
Q 004352 688 VHEAVGFVHLMVQ 700 (759)
Q Consensus 688 ~~~A~~~~~~~~~ 700 (759)
+++|...+++..+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777777654
No 150
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.78 E-value=8.2e-09 Score=93.32 Aligned_cols=130 Identities=10% Similarity=0.009 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCch----------------hhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004352 566 TVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTT----------------ATYNIMINAFSEKLNFYMAEKLFYEMS 629 (759)
Q Consensus 566 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~ 629 (759)
...+..+...+...|++++|+..|+++... .|.++ .++..++.+|...|++++|+..+++++
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 115 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL 115 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 344556666777777777777777777765 44443 677888888888888888888888888
Q ss_pred HcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCcHHHHH-HHHHHHHH
Q 004352 630 EKGCPPDNYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSLSTIG-RVINCLCVDHRVHEAV-GFVHLMVQ 700 (759)
Q Consensus 630 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~-~l~~~~~~~g~~~~A~-~~~~~~~~ 700 (759)
+.. +.+..++..++.+|...|++++|+..|+++++ +.|+..... .+..++...++.+++. ..+..+..
T Consensus 116 ~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 116 KID-KNNVKALYKLGVANMYFGFLEEAKENLYKAAS--LNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred HhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 653 33477888888888888888888888888888 677654444 3444445666666666 45555543
No 151
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.78 E-value=1.3e-07 Score=77.60 Aligned_cols=104 Identities=14% Similarity=0.253 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 004352 566 TVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMID 645 (759)
Q Consensus 566 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 645 (759)
...+..++..+...|++++|...|+++... .|.+..++..++.++...|++++|+.+++++.+.. +.+..++..++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 85 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHH
Confidence 455666666777777777777777777766 56666677777777777777777777777776542 334666777777
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHH
Q 004352 646 SFCKTGGINSGYCLLLENIDKGFIPSLST 674 (759)
Q Consensus 646 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 674 (759)
++...|++++|..+++++++ ..|+...
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~--~~~~~~~ 112 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALE--LDPNNAE 112 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HCTTCHH
T ss_pred HHHHhcCHHHHHHHHHHHHH--hCCCcHH
Confidence 77777777777777777776 5565433
No 152
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.78 E-value=5.4e-08 Score=84.69 Aligned_cols=106 Identities=8% Similarity=-0.075 Sum_probs=87.4
Q ss_pred ccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHH
Q 004352 564 LDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIM 643 (759)
Q Consensus 564 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 643 (759)
.+...+..+...+...|++++|+..|+++... .|.+...|..++.+|...|++++|+..++++++.. +.+...|..+
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 85 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRL 85 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 35566778888888889999999999988888 78888888888999999999999999999888763 3347888888
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHH
Q 004352 644 IDSFCKTGGINSGYCLLLENIDKGFIPSLST 674 (759)
Q Consensus 644 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 674 (759)
+.+|...|++++|+..|+++++ +.|++..
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~--~~p~~~~ 114 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIE--AEGNGGS 114 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HHSSSCC
T ss_pred HHHHHHccCHHHHHHHHHHHHH--hCCCchH
Confidence 8888999999999999999888 6676544
No 153
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.77 E-value=5e-08 Score=79.45 Aligned_cols=97 Identities=11% Similarity=-0.055 Sum_probs=59.0
Q ss_pred HHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHhhHHHHHHHH
Q 004352 569 FGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPP-DNYTYRIMIDSF 647 (759)
Q Consensus 569 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~ 647 (759)
+..+...+.+.|++++|+..|+++... .|.+...|..++.++...|++++|+..|+++++. .| +...+..++.++
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSH 95 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 344455566666666666666666666 5666666666666666666666666666666654 33 355666666666
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCC
Q 004352 648 CKTGGINSGYCLLLENIDKGFIPS 671 (759)
Q Consensus 648 ~~~g~~~~A~~~~~~~~~~g~~p~ 671 (759)
...|++++|+..++++++ ..|+
T Consensus 96 ~~~g~~~~A~~~~~~al~--~~P~ 117 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLL--SQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC------
T ss_pred HHcCCHHHHHHHHHHHHH--hCcC
Confidence 666666666666666666 5554
No 154
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.77 E-value=1.4e-07 Score=78.22 Aligned_cols=120 Identities=15% Similarity=0.050 Sum_probs=91.3
Q ss_pred ChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHH
Q 004352 530 NIITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMI 609 (759)
Q Consensus 530 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 609 (759)
+...+..++..+...|++++|...++++... .+.+...+..++.++...|++++|+..++++... .|.+...+..++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~ 87 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIEL-NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--DPAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc--CccCHHHHHHHH
Confidence 3445666777777778888888888887765 3446777778888888888888888888888877 677788888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCh
Q 004352 610 NAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGI 653 (759)
Q Consensus 610 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 653 (759)
.++...|++++|+..++++.+.. +.+...+..++.++...|++
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 88888888888888888887653 33467777777777777764
No 155
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.77 E-value=1.4e-07 Score=78.52 Aligned_cols=118 Identities=7% Similarity=-0.019 Sum_probs=89.6
Q ss_pred ChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHH
Q 004352 530 NIITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMI 609 (759)
Q Consensus 530 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 609 (759)
+...+..++..+...|++++|...++++.+. .+.+...+..++.+|...|++++|+..++++... .|.+...+..++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la 91 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKR-NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL--EPTFIKGYTRKA 91 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT-CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCchHHHHHHH
Confidence 3446677777777888888888888887765 3446777788888888888888888888888877 677788888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCC
Q 004352 610 NAFSEKLNFYMAEKLFYEMSEKGCPPD-NYTYRIMIDSFCKTGG 652 (759)
Q Consensus 610 ~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 652 (759)
.++...|++++|+..++++.+. .|+ ...+..+..++...|+
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDL--DSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHhhHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhcC
Confidence 8888888888888888888765 343 5667777777666553
No 156
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.74 E-value=3.3e-07 Score=75.19 Aligned_cols=116 Identities=16% Similarity=0.180 Sum_probs=76.9
Q ss_pred hhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHH
Q 004352 531 IITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMIN 610 (759)
Q Consensus 531 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 610 (759)
...+..++..+...|++++|...++++.+. .+.+...+..++.++...|++++|+..++++... .|.+..++..++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~ 85 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL-DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHH
Confidence 345556666666677777777777776654 2345666667777777777777777777777766 5666777777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc
Q 004352 611 AFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKT 650 (759)
Q Consensus 611 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 650 (759)
++...|++++|...++++.+.. +.+...+..+..++...
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhc
Confidence 7777777777777777777542 23355566665555443
No 157
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.73 E-value=2.1e-07 Score=84.34 Aligned_cols=157 Identities=11% Similarity=0.007 Sum_probs=98.0
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CccHHHHHHHHHHHHccCCh
Q 004352 508 KAAKSEDVMETFKTMIEKRCVPNIITYSILGESLCKAHKITEAFNLLEEMENK----GL-TLDTVAFGTLINGFCNSGDL 582 (759)
Q Consensus 508 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~ 582 (759)
..|++++|.+.++.+.. ........+..++..+...|++++|...+++.... +. +....++..+...|...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 34566666664433322 11223445666666666667777776666666541 11 12344566777778888888
Q ss_pred hhHHHHHHHHHHccC-CC----CchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCC--HhhHHHHHHHHHhcCC
Q 004352 583 DGAYQLFRRMEDQYK-IS----HTTATYNIMINAFSEKLNFYMAEKLFYEMSEKG---CPPD--NYTYRIMIDSFCKTGG 652 (759)
Q Consensus 583 ~~A~~~~~~~~~~~~-~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~p~--~~~~~~l~~~~~~~g~ 652 (759)
++|...+++...... .+ ....++..++.++...|++++|...+++..+.. -.+. ..++..++.++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 888888877765421 11 224557778888888888888888888776421 0111 2346778888889999
Q ss_pred hHHHHHHHHHHHh
Q 004352 653 INSGYCLLLENID 665 (759)
Q Consensus 653 ~~~A~~~~~~~~~ 665 (759)
+++|..+++++++
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999888875
No 158
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.72 E-value=5.7e-08 Score=82.05 Aligned_cols=108 Identities=7% Similarity=-0.154 Sum_probs=89.6
Q ss_pred HHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 004352 588 LFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCLLLENIDKG 667 (759)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 667 (759)
.|+++... .|.+...+..++..+...|++++|+..|+++++.. +.+...|..++.++...|++++|+..|+++++
T Consensus 6 ~l~~al~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-- 80 (142)
T 2xcb_A 6 TLAMLRGL--SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGAL-- 80 (142)
T ss_dssp ---CCTTC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred hHHHHHcC--CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--
Confidence 34444444 67778888899999999999999999999999763 44588999999999999999999999999999
Q ss_pred CCCCHH-HHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 004352 668 FIPSLS-TIGRVINCLCVDHRVHEAVGFVHLMVQ 700 (759)
Q Consensus 668 ~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 700 (759)
+.|++. .+..+..++...|++++|.+.++++.+
T Consensus 81 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 81 MDINEPRFPFHAAECHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 778654 455667777899999999999999887
No 159
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.72 E-value=1.5e-07 Score=79.02 Aligned_cols=99 Identities=7% Similarity=-0.111 Sum_probs=73.5
Q ss_pred ccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHH
Q 004352 564 LDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIM 643 (759)
Q Consensus 564 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 643 (759)
.+...+..++..+...|++++|+..|+++... .|.+...|..++.++...|++++|+..++++++.. +.+...|..+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 83 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 83 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHH
Confidence 45666777777777777777777777777777 66777777777777777777777777777777653 3346677777
Q ss_pred HHHHHhcCChHHHHHHHHHHHh
Q 004352 644 IDSFCKTGGINSGYCLLLENID 665 (759)
Q Consensus 644 ~~~~~~~g~~~~A~~~~~~~~~ 665 (759)
+.++...|++++|+..++++++
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 7777777888888877777776
No 160
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.72 E-value=2e-07 Score=91.75 Aligned_cols=97 Identities=9% Similarity=-0.049 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 004352 566 TVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMID 645 (759)
Q Consensus 566 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 645 (759)
..+|..+..+|.+.|++++|+..|+++... .|.+..+|..++.+|...|++++|+..|+++++.. +.+..++..+..
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~ 272 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALEL--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAV 272 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 567888899999999999999999999988 78899999999999999999999999999998763 334788888999
Q ss_pred HHHhcCChHHH-HHHHHHHHh
Q 004352 646 SFCKTGGINSG-YCLLLENID 665 (759)
Q Consensus 646 ~~~~~g~~~~A-~~~~~~~~~ 665 (759)
++...|++++| ...+++++.
T Consensus 273 ~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 273 CQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988 556676654
No 161
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.68 E-value=1.4e-07 Score=78.39 Aligned_cols=110 Identities=13% Similarity=0.116 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCC----Hhh
Q 004352 566 TVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGC--PPD----NYT 639 (759)
Q Consensus 566 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~----~~~ 639 (759)
...+..++..+...|++++|+..|+++... .|.+...+..++.++...|++++|+..++++.+... +++ ..+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 345667777777888888888888888777 677777788888888888888888888887775420 111 566
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004352 640 YRIMIDSFCKTGGINSGYCLLLENIDKGFIPSLSTIGRVI 679 (759)
Q Consensus 640 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 679 (759)
+..++.++...|++++|...++++++ ..|+......+.
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~l~ 119 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLA--EHRTPDVLKKCQ 119 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH--hCCCHHHHHHHH
Confidence 77777888888888888888888887 566654444333
No 162
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.67 E-value=5.2e-07 Score=76.77 Aligned_cols=113 Identities=12% Similarity=0.047 Sum_probs=76.0
Q ss_pred ccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCc---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhH
Q 004352 564 LDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHT---TATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTY 640 (759)
Q Consensus 564 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 640 (759)
.+...+..+...+...|++++|+..|+++... .|.+ ...+..++.+|...|++++|+..++++.+.. +.+...+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 34556666677777777777777777777765 4544 6667777777777777777777777776542 2346667
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004352 641 RIMIDSFCKTGGINSGYCLLLENIDKGFIPSLSTIGRVINC 681 (759)
Q Consensus 641 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 681 (759)
..++.++...|++++|...++++++ +.|+.......+..
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~ 141 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVS--LEPKNKVFQEALRN 141 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH--HCSSCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHH
Confidence 7777777777777777777777777 66665544444333
No 163
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.64 E-value=2.2e-07 Score=74.50 Aligned_cols=98 Identities=10% Similarity=-0.039 Sum_probs=44.3
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---HHHHH
Q 004352 600 HTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPS---LSTIG 676 (759)
Q Consensus 600 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~---~~~~~ 676 (759)
.+...+..++..+...|++++|+..++++.+.. +.+..+|..++.++...|++++|+..++++++ ..|+ ...+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~ 80 (112)
T 2kck_A 4 QNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVIN--VIEDEYNKDVWA 80 (112)
T ss_dssp SSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TSCCTTCHHHHH
T ss_pred CcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCcccchHHHHH
Confidence 334444444444444455555555554444331 22244444444444555555555555555544 3333 22233
Q ss_pred HHHHHHHhc-CcHHHHHHHHHHHHH
Q 004352 677 RVINCLCVD-HRVHEAVGFVHLMVQ 700 (759)
Q Consensus 677 ~l~~~~~~~-g~~~~A~~~~~~~~~ 700 (759)
.+...+... |++++|.+.++++..
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 81 AKADALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHHHHHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhh
Confidence 333333444 555555555554444
No 164
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.64 E-value=3.4e-07 Score=73.35 Aligned_cols=103 Identities=7% Similarity=-0.080 Sum_probs=91.7
Q ss_pred ccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHhhHH
Q 004352 564 LDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPP--DNYTYR 641 (759)
Q Consensus 564 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~ 641 (759)
.+...+..++..+...|++++|+..|+++.+. .|.+...+..++.++...|++++|+..++++.+.. +. +..++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~ 80 (112)
T 2kck_A 4 QNPEEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWA 80 (112)
T ss_dssp SSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHH
T ss_pred CcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHH
Confidence 35567788889999999999999999999998 78889999999999999999999999999999763 44 578899
Q ss_pred HHHHHHHhc-CChHHHHHHHHHHHhCCCCCC
Q 004352 642 IMIDSFCKT-GGINSGYCLLLENIDKGFIPS 671 (759)
Q Consensus 642 ~l~~~~~~~-g~~~~A~~~~~~~~~~g~~p~ 671 (759)
.++.++... |++++|+.+++++++ ..|+
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~--~~p~ 109 (112)
T 2kck_A 81 AKADALRYIEGKEVEAEIAEARAKL--EHHH 109 (112)
T ss_dssp HHHHHHTTCSSCSHHHHHHHHHHGG--GCCC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhh--cccC
Confidence 999999999 999999999999998 5554
No 165
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.63 E-value=5.2e-07 Score=74.61 Aligned_cols=103 Identities=16% Similarity=0.096 Sum_probs=68.2
Q ss_pred HHHHHHHHccCChhhHHHHHHHHHHccCCCCch---hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HhhHHHH
Q 004352 570 GTLINGFCNSGDLDGAYQLFRRMEDQYKISHTT---ATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPD---NYTYRIM 643 (759)
Q Consensus 570 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l 643 (759)
..++..+...|++++|+..|+.+... .|.+. ..+..++.++...|++++|+..|+++.+.. +.+ ..++..+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~l 82 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLEL--YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHH
Confidence 34555666777777777777777766 45554 566677777777777777777777776542 222 4556667
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 004352 644 IDSFCKTGGINSGYCLLLENIDKGFIPSLSTIGR 677 (759)
Q Consensus 644 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ 677 (759)
+.++...|++++|+..++++++ ..|+......
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~ 114 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVAT--QYPGSDAARV 114 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HSTTSHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH--HCCCChHHHH
Confidence 7777777777777777777776 5565544433
No 166
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.62 E-value=6.3e-07 Score=73.72 Aligned_cols=98 Identities=10% Similarity=0.028 Sum_probs=80.1
Q ss_pred hhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHH
Q 004352 531 IITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMIN 610 (759)
Q Consensus 531 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 610 (759)
...+...+..+...|++++|+..|++.++. .+.+...|..+..+|...|++++|+..|+++... .|.+...|..++.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 80 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKR-APEDARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHH
Confidence 345666777778888888888888888776 3556778888888888888888888888888888 7888888888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 004352 611 AFSEKLNFYMAEKLFYEMSEK 631 (759)
Q Consensus 611 ~~~~~g~~~~A~~~~~~~~~~ 631 (759)
++...|++++|+..|+++.+.
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHh
Confidence 888888999998888888754
No 167
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.62 E-value=9.5e-07 Score=71.48 Aligned_cols=110 Identities=14% Similarity=0.087 Sum_probs=81.9
Q ss_pred hhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHH
Q 004352 531 IITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMIN 610 (759)
Q Consensus 531 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 610 (759)
...+..++..+...|++++|...++..... .+.+...+..++.++...|++++|...++++... .|.+...+..++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~ 80 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL-DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--KPDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH-CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--CcccHHHHHHHHH
Confidence 345666677777778888888888887765 3446777777888888888888888888888877 6777888888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCC-HhhHHHHHH
Q 004352 611 AFSEKLNFYMAEKLFYEMSEKGCPPD-NYTYRIMID 645 (759)
Q Consensus 611 ~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~ 645 (759)
++...|++++|...++++.+. .|+ ...+..+..
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~ 114 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKH--EANNPQLKEGLQN 114 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHc--CCCCHHHHHHHHH
Confidence 888888888888888888754 344 555555444
No 168
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.61 E-value=7.3e-08 Score=86.98 Aligned_cols=155 Identities=7% Similarity=-0.001 Sum_probs=90.9
Q ss_pred CHHHHHHHHhcCCChHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCccH---------
Q 004352 6 LPKHVAAVVKHQKNPLTALEMFNSVKREDGFKHTLLTYKYMIDKLGFHGNFEEMENLLLEMRMDVDDSLLE--------- 76 (759)
Q Consensus 6 ~~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~--------- 76 (759)
.+.+....+...+.++.|.+.++...... ......+..++..+...|++++|...|+.+....|. ..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~ 81 (198)
T 2fbn_A 6 HHHHHSSGRENLYFQGAKKSIYDYTDEEK--VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIH--TEEWDDQILLD 81 (198)
T ss_dssp ----------------CCCSGGGCCHHHH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT--CTTCCCHHHHH
T ss_pred cccchhhhhhhhhhccccCchhhCCHHHH--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc--ccccchhhHHH
Confidence 34444444445555666665555432221 112445667788888888888888888888877655 33
Q ss_pred -------HHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHH
Q 004352 77 -------GVHIGVMRNYGRRGKVQEAVDVFERMDFYNCEPTVLSYNTIMNILVEYGYFSQVHKVYMRMRNKGIVPDVYTF 149 (759)
Q Consensus 77 -------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 149 (759)
.++..++.+|...|++++|+..++++.... +.+...+..+..+|...|++++|+..|++..+.. +.+..++
T Consensus 82 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 159 (198)
T 2fbn_A 82 KKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIR 159 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHH
Confidence 567777777777777777777777776554 4566677777777777777777777777777653 2345556
Q ss_pred HHHHHHHHccCChhhHH
Q 004352 150 VIRIKSFCRTRRPHVAL 166 (759)
Q Consensus 150 ~~l~~~~~~~~~~~~A~ 166 (759)
..+..++...++.+++.
T Consensus 160 ~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 160 NSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666555555555444
No 169
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.54 E-value=7.1e-07 Score=72.50 Aligned_cols=100 Identities=14% Similarity=-0.040 Sum_probs=86.9
Q ss_pred hcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHH
Q 004352 532 ITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINA 611 (759)
Q Consensus 532 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 611 (759)
..+..++..+...|++++|...++++++. .+.+...|..+..++...|++++|+..|+++.+. .|.+...+..++.+
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~-~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~la~~ 94 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQK-EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVS 94 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 45667788889999999999999999986 4568888999999999999999999999999998 88899999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCC
Q 004352 612 FSEKLNFYMAEKLFYEMSEKGCPPD 636 (759)
Q Consensus 612 ~~~~g~~~~A~~~~~~~~~~~~~p~ 636 (759)
+...|++++|+..++++++. .|+
T Consensus 95 ~~~~g~~~~A~~~~~~al~~--~P~ 117 (121)
T 1hxi_A 95 HTNEHNANAALASLRAWLLS--QPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHC------
T ss_pred HHHcCCHHHHHHHHHHHHHh--CcC
Confidence 99999999999999999854 554
No 170
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.53 E-value=1.1e-06 Score=76.28 Aligned_cols=99 Identities=9% Similarity=0.032 Sum_probs=77.4
Q ss_pred ChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHH
Q 004352 530 NIITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMI 609 (759)
Q Consensus 530 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 609 (759)
+...+..++..+...|++++|+..|++.++. .+.+...|..+..+|...|++++|+..|+++... .|.+...|..++
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI-APANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 3445667777777788888888888887775 3446777788888888888888888888888887 777788888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 004352 610 NAFSEKLNFYMAEKLFYEMSEK 631 (759)
Q Consensus 610 ~~~~~~g~~~~A~~~~~~~~~~ 631 (759)
.+|...|++++|+..|+++++.
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHh
Confidence 8888888888888888888765
No 171
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.53 E-value=1.6e-07 Score=76.08 Aligned_cols=95 Identities=16% Similarity=0.045 Sum_probs=65.3
Q ss_pred ccCChhhHHHHHHHHHHccC-CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHH
Q 004352 578 NSGDLDGAYQLFRRMEDQYK-ISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSG 656 (759)
Q Consensus 578 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 656 (759)
..|++++|+..|+++.+... .|.+..++..++.+|...|++++|+..++++++.. +.+..++..++.++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 35777888888888776510 25566777788888888888888888888887653 33477777788888888888888
Q ss_pred HHHHHHHHhCCCCCCHHHH
Q 004352 657 YCLLLENIDKGFIPSLSTI 675 (759)
Q Consensus 657 ~~~~~~~~~~g~~p~~~~~ 675 (759)
+..++++++ ..|++...
T Consensus 81 ~~~~~~al~--~~p~~~~~ 97 (117)
T 3k9i_A 81 VELLLKIIA--ETSDDETI 97 (117)
T ss_dssp HHHHHHHHH--HHCCCHHH
T ss_pred HHHHHHHHH--hCCCcHHH
Confidence 888888877 55655443
No 172
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.53 E-value=1e-06 Score=73.78 Aligned_cols=100 Identities=13% Similarity=0.008 Sum_probs=80.6
Q ss_pred CChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHH
Q 004352 529 PNIITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIM 608 (759)
Q Consensus 529 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 608 (759)
.+...+..++..+...|++++|...|+.++.. .+.+...+..+..++...|++++|+..++++... .|.+...+..+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 83 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR-NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFL 83 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh-CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CchhHHHHHHH
Confidence 35567777778888888888888888887775 3456777888888888888888888888888887 77788888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc
Q 004352 609 INAFSEKLNFYMAEKLFYEMSEK 631 (759)
Q Consensus 609 ~~~~~~~g~~~~A~~~~~~~~~~ 631 (759)
+.++...|++++|+..|+++.+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 88888888888888888888754
No 173
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.53 E-value=3.4e-07 Score=76.23 Aligned_cols=95 Identities=11% Similarity=-0.082 Sum_probs=51.3
Q ss_pred HHHHHHHHHccCChhhHHHHHHHHHHccCCCC-------c-----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----
Q 004352 569 FGTLINGFCNSGDLDGAYQLFRRMEDQYKISH-------T-----TATYNIMINAFSEKLNFYMAEKLFYEMSEK----- 631 (759)
Q Consensus 569 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-------~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----- 631 (759)
+......+...|++++|+..|+++++. .|. + ...|..++.++...|++++|+..++++++.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 344445555666666666666666655 333 1 125555555555666666666555555532
Q ss_pred CCCCC-HhhH----HHHHHHHHhcCChHHHHHHHHHHHh
Q 004352 632 GCPPD-NYTY----RIMIDSFCKTGGINSGYCLLLENID 665 (759)
Q Consensus 632 ~~~p~-~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~ 665 (759)
.+.|+ ...| ...+.++...|++++|+..|+++++
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 01343 4455 5555555555555555555555554
No 174
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.51 E-value=7.4e-07 Score=77.21 Aligned_cols=108 Identities=11% Similarity=0.036 Sum_probs=74.5
Q ss_pred HHHHHHHHHccCChhhHHHHHHHHHHcc------C----------CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004352 569 FGTLINGFCNSGDLDGAYQLFRRMEDQY------K----------ISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKG 632 (759)
Q Consensus 569 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 632 (759)
+...+..+.+.|++++|+..|.++.... . .|.+..+|..++.+|...|++++|+..++++++..
T Consensus 14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~ 93 (162)
T 3rkv_A 14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE 93 (162)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 4444455555555555555555554430 0 23455778888888888888888888888888653
Q ss_pred CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHH
Q 004352 633 CPPDNYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSLS-TIGRVI 679 (759)
Q Consensus 633 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~ 679 (759)
+.+...|..++.+|...|++++|+..|+++++ +.|++. .....+
T Consensus 94 -p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~l 138 (162)
T 3rkv_A 94 -ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR--NHPAAASVVAREM 138 (162)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCGGGHHHHHHHH
T ss_pred -CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh--cCCCCHHHHHHHH
Confidence 33477888888888888888888888888888 778765 444333
No 175
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.48 E-value=7.6e-06 Score=84.35 Aligned_cols=198 Identities=9% Similarity=-0.060 Sum_probs=89.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCH----------------hhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCC
Q 004352 433 INGLCKMGCVSDANNLVNDAISKGYIPDI----------------FTFNTLIDGYCKQLKMEIAIEILNTMWSHG-VTPD 495 (759)
Q Consensus 433 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 495 (759)
.+.+...|++++|.+.|..+++....... ..+..++..|...|++++|.+.+..+...- ..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 34456667777777777777665322110 124455555666666666666655544320 0111
Q ss_pred HH----HHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-ChhcHHHHHHHHHhcCCHHHHHHHHHHHHHC--C---
Q 004352 496 VI----TYNSLLNGLCKAAKSEDVMETFKTMIEK----RCVP-NIITYSILGESLCKAHKITEAFNLLEEMENK--G--- 561 (759)
Q Consensus 496 ~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~--- 561 (759)
.. +.+.+...+...|+++.|.++++..... +..+ ...++..++..+...|++++|..+++++... +
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 11 1122222223345555555555554432 1111 1224444555555555555555555554432 1
Q ss_pred CCccHHHHHHHHHHHHccCChhhHHHHHHHHHHcc---CCCCc--hhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004352 562 LTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQY---KISHT--TATYNIMINAFSEKLNFYMAEKLFYEMSE 630 (759)
Q Consensus 562 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 630 (759)
.+.....+..++..|...|++++|..+++++.... ..|+. ...+..++..+...|++++|...|.++.+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11112344445555555555555555555544321 01111 12333444444455555555555555443
No 176
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.47 E-value=3.7e-07 Score=94.51 Aligned_cols=121 Identities=12% Similarity=0.030 Sum_probs=82.3
Q ss_pred HHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc
Q 004352 571 TLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKT 650 (759)
Q Consensus 571 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 650 (759)
.++..+.+.|++++|++.|+++.+. .|.+..+|..++.+|...|++++|++.++++++.. +.+..+|..++.+|...
T Consensus 11 ~lg~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~ 87 (477)
T 1wao_1 11 TQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMAL 87 (477)
T ss_dssp SSSSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 3344566677888888888888777 67777788888888888888888888888877652 23367777778888888
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHH-HHHHHHH--HHhcCcHHHHHHHHH
Q 004352 651 GGINSGYCLLLENIDKGFIPSLST-IGRVINC--LCVDHRVHEAVGFVH 696 (759)
Q Consensus 651 g~~~~A~~~~~~~~~~g~~p~~~~-~~~l~~~--~~~~g~~~~A~~~~~ 696 (759)
|++++|+..++++++ +.|+... +..+..+ +...|++++|++.++
T Consensus 88 g~~~eA~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 88 GKFRAALRDYETVVK--VKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp TCHHHHHHHHHHHHH--HSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 888888888888877 5565333 3333333 456788888888777
No 177
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.47 E-value=3.7e-07 Score=89.95 Aligned_cols=94 Identities=7% Similarity=-0.044 Sum_probs=43.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-
Q 004352 604 TYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSLSTIGRVINCL- 682 (759)
Q Consensus 604 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~- 682 (759)
+|..++.+|...|++++|+..++++++.. +.+...|..++.+|...|++++|+..|+++++ +.|++......+..+
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~~a~~~L~~l~ 308 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDKAIRRELRALA 308 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHH
Confidence 66777777777777777777777777552 23466777777777777777777777777776 667655554444433
Q ss_pred -HhcCcHHHHHHHHHHHHH
Q 004352 683 -CVDHRVHEAVGFVHLMVQ 700 (759)
Q Consensus 683 -~~~g~~~~A~~~~~~~~~ 700 (759)
...+..+++.+.+++|..
T Consensus 309 ~~~~~~~~~a~~~~~~~l~ 327 (338)
T 2if4_A 309 EQEKALYQKQKEMYKGIFK 327 (338)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHHhhC
Confidence 234566666666666654
No 178
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.47 E-value=1.4e-06 Score=89.74 Aligned_cols=129 Identities=7% Similarity=-0.027 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCc---------------hhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004352 566 TVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHT---------------TATYNIMINAFSEKLNFYMAEKLFYEMSE 630 (759)
Q Consensus 566 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 630 (759)
...+..+...|.+.|++++|+..|+++... .|.+ ..+|..++.+|...|++++|+..++++++
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 334555666666666666666666666665 3444 57788888888888899999888888886
Q ss_pred cCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHhcCcHHHHHH-HHHHHH
Q 004352 631 KGCPPDNYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSLSTIGR-VINCLCVDHRVHEAVG-FVHLMV 699 (759)
Q Consensus 631 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~-l~~~~~~~g~~~~A~~-~~~~~~ 699 (759)
.. +.+...|..++.+|...|++++|+..|+++++ +.|++..... +...+...|+.++|.+ .+++|.
T Consensus 346 ~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 346 LD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TC----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred cC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 63 33478888888888889999999999999888 7787655544 4444467777777764 455554
No 179
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.47 E-value=1.1e-06 Score=72.66 Aligned_cols=111 Identities=9% Similarity=0.101 Sum_probs=75.2
Q ss_pred hcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCc-------hhh
Q 004352 532 ITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHT-------TAT 604 (759)
Q Consensus 532 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~ 604 (759)
..+..++..+...|++++|...++++.+. .+.+...+..++.+|...|++++|+..++++... .|.+ ..+
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKEL-DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV--GRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhh--ccccchhHHHHHHH
Confidence 34555666666777777777777777665 2445666777777777777777777777777665 3333 667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 004352 605 YNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSF 647 (759)
Q Consensus 605 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 647 (759)
+..++.++...|++++|.+.|+++.+. .|+...+..+..+.
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~ 122 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHHH
Confidence 777788888888888888888887765 45655555554443
No 180
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.47 E-value=1e-06 Score=87.70 Aligned_cols=119 Identities=9% Similarity=-0.000 Sum_probs=86.1
Q ss_pred HHHHHHHHHccCChhhHHHHHHHHHH----------------ccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004352 569 FGTLINGFCNSGDLDGAYQLFRRMED----------------QYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKG 632 (759)
Q Consensus 569 ~~~l~~~~~~~g~~~~A~~~~~~~~~----------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 632 (759)
+..+...+.+.|++++|+..|+++.+ . .|.+..+|..++.+|...|++++|+..++++++.
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~--~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~- 302 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKL--QPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI- 302 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGG--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHH--HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-
Confidence 33444455555555555555555544 3 4556788889999999999999999999999864
Q ss_pred CCCC-HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHhcCcHHHHHH
Q 004352 633 CPPD-NYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSLSTIGR-VINCLCVDHRVHEAVG 693 (759)
Q Consensus 633 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~-l~~~~~~~g~~~~A~~ 693 (759)
.|+ ...|..++.+|...|++++|+..|+++++ +.|++..... +...+...++.+++.+
T Consensus 303 -~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~--l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 303 -DPSNTKALYRRAQGWQGLKEYDQALADLKKAQE--IAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 454 78888899999999999999999999998 7786554444 4444456677776654
No 181
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.46 E-value=3.7e-06 Score=71.32 Aligned_cols=111 Identities=10% Similarity=-0.038 Sum_probs=83.2
Q ss_pred ChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcc----HHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhH
Q 004352 530 NIITYSILGESLCKAHKITEAFNLLEEMENKGLTLD----TVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATY 605 (759)
Q Consensus 530 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 605 (759)
+...+..++..+...|++++|...|++..+. .|+ ...+..+..+|...|++++|+..++++... .|.+...+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~ 102 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--DGGDVKAL 102 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TSCCHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CccCHHHH
Confidence 4456666777777778888888888877764 233 567777888888888888888888888877 67778888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HhhHHHHHHH
Q 004352 606 NIMINAFSEKLNFYMAEKLFYEMSEKGCPPD-NYTYRIMIDS 646 (759)
Q Consensus 606 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~ 646 (759)
..++.++...|++++|+..|+++.+. .|+ ...+..+...
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSL--EPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHH
Confidence 88888888888888888888888865 344 5555544443
No 182
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.46 E-value=1.2e-06 Score=72.96 Aligned_cols=94 Identities=7% Similarity=-0.132 Sum_probs=81.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--------H-----hhHHHHHHHHHhcCChHHHHHHHHHHHhCCC-
Q 004352 603 ATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPD--------N-----YTYRIMIDSFCKTGGINSGYCLLLENIDKGF- 668 (759)
Q Consensus 603 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--------~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~- 668 (759)
..+...+..+...|++++|+..|+++++. .|+ . .+|..++.++...|++++|+..++++++ +
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~--l~ 87 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH--YF 87 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hh
Confidence 45677888899999999999999999965 444 2 3899999999999999999999999999 7
Q ss_pred ------CCCHH-HH----HHHHHHHHhcCcHHHHHHHHHHHHH
Q 004352 669 ------IPSLS-TI----GRVINCLCVDHRVHEAVGFVHLMVQ 700 (759)
Q Consensus 669 ------~p~~~-~~----~~l~~~~~~~g~~~~A~~~~~~~~~ 700 (759)
.|+.. .| +....++...|++++|+..|++..+
T Consensus 88 n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 88 NRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 89754 45 5777888999999999999999987
No 183
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.45 E-value=5.2e-06 Score=68.45 Aligned_cols=95 Identities=11% Similarity=-0.033 Sum_probs=71.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccH---HHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCc---hhhHHH
Q 004352 534 YSILGESLCKAHKITEAFNLLEEMENKGLTLDT---VAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHT---TATYNI 607 (759)
Q Consensus 534 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~ 607 (759)
+..++..+...|++++|...++.+.+.. +.+. ..+..++.++...|++++|+..|+++... .|.+ +.++..
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~ 81 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR--YPTHDKAAGGLLK 81 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--CCCCcccHHHHHH
Confidence 4456666777788888888888877642 2233 46777778888888888888888888877 5666 667788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Q 004352 608 MINAFSEKLNFYMAEKLFYEMSEK 631 (759)
Q Consensus 608 l~~~~~~~g~~~~A~~~~~~~~~~ 631 (759)
++.++...|++++|+..|+++.+.
T Consensus 82 la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 888888888888888888888765
No 184
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.43 E-value=4.1e-07 Score=75.53 Aligned_cols=96 Identities=9% Similarity=-0.026 Sum_probs=75.4
Q ss_pred ccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCH----------HHHHHHHHHHHHcCCCCC-HhhHHHHHHH
Q 004352 578 NSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNF----------YMAEKLFYEMSEKGCPPD-NYTYRIMIDS 646 (759)
Q Consensus 578 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~p~-~~~~~~l~~~ 646 (759)
+.+.+++|++.+++..+. .|.+...|..++.++...+++ ++|+..|+++++. .|+ ..+|..++.+
T Consensus 14 r~~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~~A~~~LG~a 89 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcHHHHHHHHHH
Confidence 445678888888888887 788888888888888877664 5888888888865 565 7788888888
Q ss_pred HHhc-----------CChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004352 647 FCKT-----------GGINSGYCLLLENIDKGFIPSLSTIGRVI 679 (759)
Q Consensus 647 ~~~~-----------g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 679 (759)
|... |++++|+.+|+++++ +.|++..+...+
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al 131 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSL 131 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 8876 489999999999999 889876554443
No 185
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.42 E-value=1.4e-07 Score=97.77 Aligned_cols=121 Identities=10% Similarity=-0.005 Sum_probs=91.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcC
Q 004352 537 LGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKL 616 (759)
Q Consensus 537 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 616 (759)
++..+...|++++|...++++++. .+.+...+..+..+|.+.|++++|+..++++.+. .|.+..+|..++.+|...|
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIEL-NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALG 88 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC
Confidence 344456778888888888888876 3456778888888888888888888888888887 7888888888888888888
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhhHHHHHHH--HHhcCChHHHHHHHH
Q 004352 617 NFYMAEKLFYEMSEKGCPPDNYTYRIMIDS--FCKTGGINSGYCLLL 661 (759)
Q Consensus 617 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~g~~~~A~~~~~ 661 (759)
++++|++.|+++++.. +.+...+..+..+ +...|++++|+..++
T Consensus 89 ~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 89 KFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp CHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 8888888888888653 2235666666666 777888888888888
No 186
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.40 E-value=1.3e-05 Score=82.62 Aligned_cols=167 Identities=9% Similarity=0.052 Sum_probs=84.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCcc---HHHHHHHHHHHHccCChhhHHHHHHHHHHc----cCCCCchhh
Q 004352 534 YSILGESLCKAHKITEAFNLLEEMENK--GLTLD---TVAFGTLINGFCNSGDLDGAYQLFRRMEDQ----YKISHTTAT 604 (759)
Q Consensus 534 ~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~ 604 (759)
+..++..|...|++++|.+.+..+... .+... ..+...+...+...|++++|..+++..... ...+....+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 445556666666666666666555432 11100 112223333444556666666666655432 112223445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc--CC--CCC-HhhHHHHHHHHHhcCChHHHHHHHHHHHhC--CC-CCC--HHH
Q 004352 605 YNIMINAFSEKLNFYMAEKLFYEMSEK--GC--PPD-NYTYRIMIDSFCKTGGINSGYCLLLENIDK--GF-IPS--LST 674 (759)
Q Consensus 605 ~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~--~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~-~p~--~~~ 674 (759)
+..++..|...|++++|..+++++... +. .+. ..++..++..|...|++++|..+++++... .. .|. ...
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 566666677777777777766665432 11 111 345666666777777777777777666531 01 111 111
Q ss_pred HHHHHHHH-HhcCcHHHHHHHHHHHHH
Q 004352 675 IGRVINCL-CVDHRVHEAVGFVHLMVQ 700 (759)
Q Consensus 675 ~~~l~~~~-~~~g~~~~A~~~~~~~~~ 700 (759)
+...+..+ ...|++++|.+.+.+..+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 22222222 456777777666666543
No 187
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.39 E-value=5.7e-07 Score=72.76 Aligned_cols=87 Identities=11% Similarity=0.013 Sum_probs=69.6
Q ss_pred hcCCHHHHHHHHHHHHHCC--CCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHH
Q 004352 543 KAHKITEAFNLLEEMENKG--LTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYM 620 (759)
Q Consensus 543 ~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 620 (759)
..|++++|+..|+++++.+ .+.+...+..+..+|...|++++|+..|+++.+. .|.++.++..++.++...|++++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--FPNHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHcCCHHH
Confidence 3577888888888888753 2445667888888999999999999999999888 78888999999999999999999
Q ss_pred HHHHHHHHHHc
Q 004352 621 AEKLFYEMSEK 631 (759)
Q Consensus 621 A~~~~~~~~~~ 631 (759)
|+..++++++.
T Consensus 80 A~~~~~~al~~ 90 (117)
T 3k9i_A 80 GVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998865
No 188
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.38 E-value=1.9e-06 Score=74.49 Aligned_cols=134 Identities=13% Similarity=-0.018 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCc----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-H
Q 004352 567 VAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHT----TATYNIMINAFSEKLNFYMAEKLFYEMSEK----GCPPD-N 637 (759)
Q Consensus 567 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~ 637 (759)
.++..+...|...|++++|+..++++.+.....++ ..++..++.++...|++++|+..++++.+. +-++. .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 34566666777777777777777776654211111 246677788888888888888888876643 11111 4
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 004352 638 YTYRIMIDSFCKTGGINSGYCLLLENIDK----GFIPS-LSTIGRVINCLCVDHRVHEAVGFVHLMVQ 700 (759)
Q Consensus 638 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 700 (759)
.++..++.++...|++++|..+++++++. +..+. ...+..+...+...|++++|.+.+++..+
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 56777888888889999999988888752 11111 22334555566788999999998888765
No 189
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.38 E-value=2.1e-06 Score=74.21 Aligned_cols=133 Identities=10% Similarity=0.108 Sum_probs=83.0
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCC----chh
Q 004352 533 TYSILGESLCKAHKITEAFNLLEEMENK----GL-TLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISH----TTA 603 (759)
Q Consensus 533 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~ 603 (759)
++..++..+...|++++|...+++..+. +. .....++..+...+...|++++|...++++.......+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444555555555555555555555432 00 00113456666777777777777777777655421111 145
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004352 604 TYNIMINAFSEKLNFYMAEKLFYEMSEK----GCPPD-NYTYRIMIDSFCKTGGINSGYCLLLENID 665 (759)
Q Consensus 604 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 665 (759)
++..++.++...|++++|+..++++.+. +.++. ..++..++.++...|++++|..+++++++
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 6677778888888888888888776643 11111 45677788888899999999999988876
No 190
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.34 E-value=1.1e-06 Score=86.47 Aligned_cols=154 Identities=11% Similarity=-0.060 Sum_probs=87.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHH
Q 004352 495 DVITYNSLLNGLCKAAKSEDVMETFKTMIEKRCVPNIITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLIN 574 (759)
Q Consensus 495 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 574 (759)
....+..+...+.+.|++++|+..|++.+.. .|+... +...++.+++...+ ...+|..+..
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l----------~~~~~~nla~ 238 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV----------KNPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH----------HTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH----------HHHHHHHHHH
Confidence 3455667777778888888888888887765 233221 12223333333222 1136788899
Q ss_pred HHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HhhHHHHHHH-HHhcCC
Q 004352 575 GFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPD-NYTYRIMIDS-FCKTGG 652 (759)
Q Consensus 575 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~-~~~~g~ 652 (759)
+|.+.|++++|+..++++... .|.+..+|..++.+|...|++++|+..|+++++. .|+ ..++..+..+ ....+.
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~ 314 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKAL 314 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998 8889999999999999999999999999999854 565 6666666665 345677
Q ss_pred hHHHHHHHHHHHhCCCCCCHH
Q 004352 653 INSGYCLLLENIDKGFIPSLS 673 (759)
Q Consensus 653 ~~~A~~~~~~~~~~g~~p~~~ 673 (759)
.+.+...|.+++. ..|++.
T Consensus 315 ~~~a~~~~~~~l~--~~p~~~ 333 (338)
T 2if4_A 315 YQKQKEMYKGIFK--GKDEGG 333 (338)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHhhC--CCCCCC
Confidence 8889999999988 666543
No 191
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.33 E-value=2.2e-05 Score=82.69 Aligned_cols=173 Identities=7% Similarity=-0.079 Sum_probs=132.8
Q ss_pred CHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccC
Q 004352 511 KSEDVMETFKTMIEKRCVPNIITYSILGESLCKAHK----------ITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSG 580 (759)
Q Consensus 511 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 580 (759)
..++|++.++.++..+ +-+...|+.-..++...|+ ++++...++.+.+. .+-+..+|..-..++.+.|
T Consensus 44 ~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~-~pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV-NPKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcc
Confidence 3467788888888764 2245566666666666666 88899999999886 4567888888888888888
Q ss_pred --ChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc-------
Q 004352 581 --DLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKL-NFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKT------- 650 (759)
Q Consensus 581 --~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~------- 650 (759)
+++++++.++++.+. .|.+..+|+....++...| .++++++.++++++.. +-|..+|+..+.++...
T Consensus 122 ~~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 122 EPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred cccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccc
Confidence 669999999999998 8889999999999999988 8999999999998653 33588888888877663
Q ss_pred -------CChHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCcHHH
Q 004352 651 -------GGINSGYCLLLENIDKGFIPSLSTIG-RVINCLCVDHRVHE 690 (759)
Q Consensus 651 -------g~~~~A~~~~~~~~~~g~~p~~~~~~-~l~~~~~~~g~~~~ 690 (759)
+.++++++++.+++. +.|++.... .....+...++.++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~--~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHH--HCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHHh--hCCCCccHHHHHHHHHhcCCCccc
Confidence 567899999999998 788755544 44444455666444
No 192
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.33 E-value=5.4e-06 Score=85.43 Aligned_cols=96 Identities=14% Similarity=-0.052 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HhhHHHHH
Q 004352 566 TVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPD-NYTYRIMI 644 (759)
Q Consensus 566 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~ 644 (759)
..+|..+..+|.+.|++++|+..|++++.. .|.+..+|..++.+|...|++++|+..|+++++. .|+ ..++..+.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~ 392 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGL--DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQIS 392 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 567888899999999999999999999998 8889999999999999999999999999999954 565 77888888
Q ss_pred HHHHhcCChHHHHH-HHHHHHh
Q 004352 645 DSFCKTGGINSGYC-LLLENID 665 (759)
Q Consensus 645 ~~~~~~g~~~~A~~-~~~~~~~ 665 (759)
.++...|+++++.+ .+.+|..
T Consensus 393 ~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 393 MCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 89999998887764 4555543
No 193
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.30 E-value=1.4e-05 Score=84.12 Aligned_cols=114 Identities=6% Similarity=-0.063 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCC----------hhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcC-
Q 004352 548 TEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGD----------LDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKL- 616 (759)
Q Consensus 548 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 616 (759)
++|.+.++.++.. -+-+..+|+.-..++...|+ ++++++.++.+... .|.+..+|+...+++...+
T Consensus 46 eeal~~~~~~l~~-nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 46 ESVLELTSQILGA-NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp HHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHH-CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHccc
Confidence 4445555555543 12334444444444444444 55555555555554 5555555555555555555
Q ss_pred -CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC-ChHHHHHHHHHHHh
Q 004352 617 -NFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTG-GINSGYCLLLENID 665 (759)
Q Consensus 617 -~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 665 (759)
+++++++.++++.+.. +-+..+|+.-..++...| .+++++.++.++++
T Consensus 123 ~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~ 172 (567)
T 1dce_A 123 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT 172 (567)
T ss_dssp CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT
T ss_pred ccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 4455555555555442 223455555555555555 45555555555555
No 194
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.30 E-value=5.3e-06 Score=82.48 Aligned_cols=91 Identities=10% Similarity=-0.057 Sum_probs=76.0
Q ss_pred cHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 004352 565 DTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMI 644 (759)
Q Consensus 565 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 644 (759)
+..+|..+..+|.+.|++++|+..++++.+. .|.+..+|..++.+|...|++++|+..|+++.+.. +.+...+..+.
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~ 348 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEI--DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELL 348 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 5567888888999999999999999999987 78888999999999999999999999999998763 33477778888
Q ss_pred HHHHhcCChHHHHH
Q 004352 645 DSFCKTGGINSGYC 658 (759)
Q Consensus 645 ~~~~~~g~~~~A~~ 658 (759)
.++...++.+++.+
T Consensus 349 ~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 349 KVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888777777654
No 195
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.28 E-value=8.9e-06 Score=70.27 Aligned_cols=99 Identities=7% Similarity=-0.034 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhc------------------CCCCccHHHHHHHHHHHHhcCChhHHHHHHHH
Q 004352 40 LLTYKYMIDKLGFHGNFEEMENLLLEMRMD------------------VDDSLLEGVHIGVMRNYGRRGKVQEAVDVFER 101 (759)
Q Consensus 40 ~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~------------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 101 (759)
...+...+..+.+.|++++|...|..+... .|. ...++..++.+|.+.|++++|+..+++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~nla~~~~~~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRK--NIPLYANMSQCYLNIGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHT--HHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHH--HHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 446677888888888999998888888876 333 456777788888888888888888888
Q ss_pred hhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 004352 102 MDFYNCEPTVLSYNTIMNILVEYGYFSQVHKVYMRMRNKG 141 (759)
Q Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 141 (759)
+.... +.++..|..++.+|...|++++|...|++.++..
T Consensus 89 al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 89 VLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 77654 5567778888888888888888888888887753
No 196
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.25 E-value=6.4e-06 Score=66.20 Aligned_cols=83 Identities=8% Similarity=0.017 Sum_probs=68.2
Q ss_pred hhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHH
Q 004352 583 DGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCLLLE 662 (759)
Q Consensus 583 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 662 (759)
++|+..|+++... .|.+...+..++.+|...|++++|+..|+++++.. +.+...|..++.++...|++++|+..|++
T Consensus 2 ~~a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 2 QAITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CCHHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4677888888877 78888888889999999999999999999888663 33477888888889999999999999998
Q ss_pred HHhCCCCC
Q 004352 663 NIDKGFIP 670 (759)
Q Consensus 663 ~~~~g~~p 670 (759)
+++ +.|
T Consensus 79 al~--~~~ 84 (115)
T 2kat_A 79 GLA--AAQ 84 (115)
T ss_dssp HHH--HHH
T ss_pred HHH--hcc
Confidence 887 544
No 197
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.13 E-value=2.9e-06 Score=67.73 Aligned_cols=61 Identities=10% Similarity=0.012 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004352 567 VAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMS 629 (759)
Q Consensus 567 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 629 (759)
..+..+...+...|++++|+..|+++... .|.+...+..++.++...|++++|+..+++++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 65 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITA--QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGL 65 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 33444444444555555555555555444 44444444444445555555555555554444
No 198
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.12 E-value=2.1e-05 Score=80.51 Aligned_cols=126 Identities=11% Similarity=-0.033 Sum_probs=88.6
Q ss_pred HHHccCChhhHHHHHHHHHHcc------CCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCC---CC-HhhHH
Q 004352 575 GFCNSGDLDGAYQLFRRMEDQY------KISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEK---GCP---PD-NYTYR 641 (759)
Q Consensus 575 ~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~---p~-~~~~~ 641 (759)
.+...|++++|+.++++..+.. ..|....+++.++.+|...|++++|+.+++++++. -+. |+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 4557788888888887776532 13345667788888888888888888888876642 122 33 46788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhC---CCCCCHHHHH----HHHHHHHhcCcHHHHHHHHHHHHH
Q 004352 642 IMIDSFCKTGGINSGYCLLLENIDK---GFIPSLSTIG----RVINCLCVDHRVHEAVGFVHLMVQ 700 (759)
Q Consensus 642 ~l~~~~~~~g~~~~A~~~~~~~~~~---g~~p~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~ 700 (759)
.|+..|...|++++|+.+++++++- -+-|+.+... .+..++...|++++|...++++.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999998741 1235433332 233333577889999999998876
No 199
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.12 E-value=2.1e-06 Score=68.55 Aligned_cols=94 Identities=11% Similarity=0.006 Sum_probs=72.5
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-------H
Q 004352 601 TTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSL-------S 673 (759)
Q Consensus 601 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-------~ 673 (759)
+...+..++..+...|++++|+..|+++++.. +.+..+|..++.++...|++++|+..++++++ +.|+. .
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR--YTSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SCSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCccHHHHHHH
Confidence 45678889999999999999999999999763 44588899999999999999999999999999 77874 2
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHH
Q 004352 674 TIGRVINCLCVDHRVHEAVGFVHL 697 (759)
Q Consensus 674 ~~~~l~~~~~~~g~~~~A~~~~~~ 697 (759)
.+..+...+...|+.++|+..+++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHHHH
Confidence 333444444555555555544433
No 200
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.04 E-value=1.6e-05 Score=66.05 Aligned_cols=95 Identities=16% Similarity=0.118 Sum_probs=71.1
Q ss_pred hcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCC----------hhhHHHHHHHHHHccCCCCchhhHHHHHHHH
Q 004352 543 KAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGD----------LDGAYQLFRRMEDQYKISHTTATYNIMINAF 612 (759)
Q Consensus 543 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 612 (759)
+.+.+++|...++..++. -|.+...|..+..++...++ +++|+..|+++++. .|.+..+|..++.+|
T Consensus 14 r~~~feeA~~~~~~Ai~l-~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~~A~~~LG~ay 90 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKS-NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcHHHHHHHHHHH
Confidence 445566666666666665 24466666666666666555 56999999999999 899999999999999
Q ss_pred HhcC-----------CHHHHHHHHHHHHHcCCCCCHhhHHH
Q 004352 613 SEKL-----------NFYMAEKLFYEMSEKGCPPDNYTYRI 642 (759)
Q Consensus 613 ~~~g-----------~~~~A~~~~~~~~~~~~~p~~~~~~~ 642 (759)
...| ++++|++.|+++++. .|+...|..
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~ 129 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLK 129 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHH
Confidence 8774 899999999999965 687554433
No 201
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.04 E-value=0.00011 Score=60.94 Aligned_cols=108 Identities=6% Similarity=-0.018 Sum_probs=52.9
Q ss_pred CHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHh----cCCHHHH
Q 004352 546 KITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSE----KLNFYMA 621 (759)
Q Consensus 546 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A 621 (759)
++++|..+|++..+.+. ++.. +...|...+.+++|++.|++..+. .++..+..++.+|.. .+++++|
T Consensus 10 d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 10 DLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHHH
Confidence 34455555555554431 1111 444444444455555555555443 234455555555554 4555555
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHh----cCChHHHHHHHHHHHh
Q 004352 622 EKLFYEMSEKGCPPDNYTYRIMIDSFCK----TGGINSGYCLLLENID 665 (759)
Q Consensus 622 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~ 665 (759)
+++|+++.+.+ ++..+..|+..|.. .+++++|+.+|+++.+
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHH
Confidence 55555555432 34444555555554 4555555555555555
No 202
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.03 E-value=0.00013 Score=60.58 Aligned_cols=112 Identities=10% Similarity=-0.024 Sum_probs=90.9
Q ss_pred CChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh----cCChHH
Q 004352 580 GDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCK----TGGINS 655 (759)
Q Consensus 580 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~ 655 (759)
+++++|++.|++..+.. ++... ++..|...+..++|+++|+++.+.+ ++..+..|+..|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g----~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN----EMFGC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT----CTTHH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC----CHhhh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHH
Confidence 46889999999998873 22333 8888888888999999999998764 67788889988888 889999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCcHHHHHHHHHHHHHCCC
Q 004352 656 GYCLLLENIDKGFIPSLSTIGRVINCLCV----DHRVHEAVGFVHLMVQKGI 703 (759)
Q Consensus 656 A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 703 (759)
|+.+|+++.+.| +......+...+.. .++.++|.+++++..+.|.
T Consensus 80 A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 999999999853 45666677777766 7899999999999988653
No 203
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.03 E-value=4.4e-05 Score=57.94 Aligned_cols=62 Identities=11% Similarity=0.210 Sum_probs=28.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004352 603 ATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCLLLENID 665 (759)
Q Consensus 603 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 665 (759)
..+..++..+...|++++|+..++++.+.. +.+..++..++.++...|++++|+..++++++
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 344444444444444444444444444331 12244444444444444555555555544444
No 204
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.02 E-value=2.7e-05 Score=79.77 Aligned_cols=125 Identities=9% Similarity=-0.057 Sum_probs=77.7
Q ss_pred HHhcCCHHHHHHHHHHHHHC-----C--CCccHHHHHHHHHHHHccCChhhHHHHHHHHHHcc------CCCCchhhHHH
Q 004352 541 LCKAHKITEAFNLLEEMENK-----G--LTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQY------KISHTTATYNI 607 (759)
Q Consensus 541 ~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~~ 607 (759)
+...|++++|..++++.++. | .+....+++.++.+|...|++++|..+++++.+.. ..|....+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 33556666666666665532 1 11223456677777777777777777777665421 23445666777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc---CCCCC----HhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004352 608 MINAFSEKLNFYMAEKLFYEMSEK---GCPPD----NYTYRIMIDSFCKTGGINSGYCLLLENID 665 (759)
Q Consensus 608 l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 665 (759)
++.+|...|++++|+.+++++++. -+-|| ..+...+..++...|.+++|...|.++.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777776532 11233 23445566677778888888888887765
No 205
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.96 E-value=2.8e-05 Score=60.39 Aligned_cols=67 Identities=16% Similarity=0.075 Sum_probs=49.3
Q ss_pred CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004352 598 ISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCLLLENID 665 (759)
Q Consensus 598 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 665 (759)
.|.++..+..++.+|...|++++|+..|+++++.. +.+..+|..++.+|...|++++|+..++++++
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 46677777788888888888888888888877653 23366777788888888888888888888776
No 206
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.91 E-value=0.00023 Score=68.23 Aligned_cols=75 Identities=11% Similarity=0.022 Sum_probs=57.5
Q ss_pred CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 004352 598 ISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSLSTIG 676 (759)
Q Consensus 598 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 676 (759)
.|.++.+|..++..+...|++++|+..+++++.. .|+...|..++..+...|++++|...|++++. +.|...++.
T Consensus 273 ~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L--n~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~ 347 (372)
T 3ly7_A 273 LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL--EMSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLY 347 (372)
T ss_dssp GTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHH
T ss_pred CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHH
Confidence 5667777777777777778888888888888866 36777777777788888888888888888888 778776543
No 207
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.90 E-value=0.00013 Score=55.23 Aligned_cols=82 Identities=9% Similarity=0.064 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 004352 40 LLTYKYMIDKLGFHGNFEEMENLLLEMRMDVDDSLLEGVHIGVMRNYGRRGKVQEAVDVFERMDFYNCEPTVLSYNTIMN 119 (759)
Q Consensus 40 ~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 119 (759)
...+..++..+...|++++|...|+.+....|. +..++..++.++...|++++|+..|++..... +.+...+..+..
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~ 85 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN--NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 445666777777777777787777777777766 66777777777777777777777777776544 345556666665
Q ss_pred HHHHc
Q 004352 120 ILVEY 124 (759)
Q Consensus 120 ~~~~~ 124 (759)
++...
T Consensus 86 ~~~~~ 90 (91)
T 1na3_A 86 AKQKQ 90 (91)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 55443
No 208
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.82 E-value=9.8e-05 Score=59.10 Aligned_cols=78 Identities=10% Similarity=-0.031 Sum_probs=42.0
Q ss_pred HHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHH
Q 004352 22 TALEMFNSVKREDGFKHTLLTYKYMIDKLGFHGNFEEMENLLLEMRMDVDDSLLEGVHIGVMRNYGRRGKVQEAVDVFER 101 (759)
Q Consensus 22 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 101 (759)
.|++.|+.+....+ .+...+..++.++...|++++|...|+.+...+|. ...++..++.+|...|++++|+..|++
T Consensus 3 ~a~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 3 AITERLEAMLAQGT--DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT--YSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CHHHHHHHHHTTTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC--CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34555555544432 23445555555555555555555555555555554 455555555555555555555555555
Q ss_pred hh
Q 004352 102 MD 103 (759)
Q Consensus 102 ~~ 103 (759)
..
T Consensus 79 al 80 (115)
T 2kat_A 79 GL 80 (115)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 209
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.74 E-value=0.00014 Score=56.29 Aligned_cols=67 Identities=13% Similarity=0.046 Sum_probs=57.9
Q ss_pred CccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004352 563 TLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEK 631 (759)
Q Consensus 563 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 631 (759)
+.+...+..+..+|...|++++|+..|+++.+. .|.+..+|..++.+|...|++++|+..|+++++.
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 446778888889999999999999999999988 7888889999999999999999999999988754
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.71 E-value=0.00031 Score=67.37 Aligned_cols=119 Identities=13% Similarity=0.000 Sum_probs=80.4
Q ss_pred hhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhc---C--C---HHHHHHHHHHHHHc-CCCCCHhhHHHHHHHHHhcCC
Q 004352 582 LDGAYQLFRRMEDQYKISHTTATYNIMINAFSEK---L--N---FYMAEKLFYEMSEK-GCPPDNYTYRIMIDSFCKTGG 652 (759)
Q Consensus 582 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g--~---~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~ 652 (759)
..+|+.+|+++.+. .|.....|..++.+|... + . .......++..... .-+.++.+|..+...+...|+
T Consensus 215 ~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd 292 (372)
T 3ly7_A 215 LNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGK 292 (372)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCC
Confidence 45677777777766 666666666555554311 1 0 11111112221111 114458888888888888899
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCc
Q 004352 653 INSGYCLLLENIDKGFIPSLSTIGRVINCLCVDHRVHEAVGFVHLMVQKGIVPE 706 (759)
Q Consensus 653 ~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 706 (759)
+++|+..+++++. ++|+...+..+...+...|++++|.+.++++.. ++|.
T Consensus 293 ~d~A~~~l~rAl~--Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~ 342 (372)
T 3ly7_A 293 TDESYQAINTGID--LEMSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPG 342 (372)
T ss_dssp HHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCS
T ss_pred HHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCC
Confidence 9999999999999 778876666666677899999999999999998 5565
No 211
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.64 E-value=6.2e-05 Score=58.27 Aligned_cols=63 Identities=16% Similarity=0.199 Sum_probs=37.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHh-hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 004352 608 MINAFSEKLNFYMAEKLFYEMSEKGCPPDNY-TYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSLS 673 (759)
Q Consensus 608 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 673 (759)
.+..+...|++++|+..++++++.. +.+.. .|..++.++...|++++|+..|+++++ +.|+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~ 69 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE--LNPDSP 69 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTST
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCcH
Confidence 4455556666666666666666542 22345 566666666666666666666666666 555543
No 212
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.61 E-value=6.6e-05 Score=58.13 Aligned_cols=82 Identities=17% Similarity=0.159 Sum_probs=56.9
Q ss_pred HHHHHHccCChhhHHHHHHHHHHccCCCCchh-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHh
Q 004352 572 LINGFCNSGDLDGAYQLFRRMEDQYKISHTTA-TYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPD-NYTYRIMIDSFCK 649 (759)
Q Consensus 572 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 649 (759)
.+..+...|++++|+..|+++.+. .|.+.. .+..++.+|...|++++|+..|+++++. .|+ ..++..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~------- 74 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL--NPDSPALQAR------- 74 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTHHHHH-------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHHHHH-------
Confidence 455667778888888888888777 677777 8888888888888888888888888765 344 333311
Q ss_pred cCChHHHHHHHHHHHh
Q 004352 650 TGGINSGYCLLLENID 665 (759)
Q Consensus 650 ~g~~~~A~~~~~~~~~ 665 (759)
+.+.+++..+++...
T Consensus 75 -~~~~~a~~~~~~~~~ 89 (99)
T 2kc7_A 75 -KMVMDILNFYNKDMY 89 (99)
T ss_dssp -HHHHHHHHHHCCTTH
T ss_pred -HHHHHHHHHHHHHhc
Confidence 445556666655544
No 213
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.55 E-value=0.0006 Score=51.38 Aligned_cols=65 Identities=6% Similarity=-0.045 Sum_probs=37.1
Q ss_pred CCchhhHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004352 599 SHTTATYNIMINAFSEKLN---FYMAEKLFYEMSEKGCPPD-NYTYRIMIDSFCKTGGINSGYCLLLENID 665 (759)
Q Consensus 599 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 665 (759)
|+++..+..++.++...++ .++|..+++++++. .|+ ...+..++..+...|++++|+.+|+++++
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--EPYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4555555666655543333 46666666666644 333 55555555666666666666666666665
No 214
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.53 E-value=0.00064 Score=68.58 Aligned_cols=108 Identities=10% Similarity=-0.121 Sum_probs=74.1
Q ss_pred HHHHHccCChhhHHHHHHHHHHccC------CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCC---C-Hhh
Q 004352 573 INGFCNSGDLDGAYQLFRRMEDQYK------ISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEK---GCPP---D-NYT 639 (759)
Q Consensus 573 ~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p---~-~~~ 639 (759)
+.-+...|++++|+.++++..+... .|....+++.++.+|...|++++|+.+++++++- -+.| + ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 3445567888888888888875421 2334567788888888888888888888877642 1223 3 457
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhC---CCCCCHHHHHHHHH
Q 004352 640 YRIMIDSFCKTGGINSGYCLLLENIDK---GFIPSLSTIGRVIN 680 (759)
Q Consensus 640 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---g~~p~~~~~~~l~~ 680 (759)
++.|+..|...|++++|+.+++++++- -+-|+.+....+..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~ 417 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLIL 417 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 888889999999999999999988741 12355554444433
No 215
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.46 E-value=0.00093 Score=54.75 Aligned_cols=92 Identities=10% Similarity=-0.043 Sum_probs=64.2
Q ss_pred hhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCC--CHhhHHHHHHHHHhcCChHHH
Q 004352 582 LDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKL---NFYMAEKLFYEMSEKGCPP--DNYTYRIMIDSFCKTGGINSG 656 (759)
Q Consensus 582 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A 656 (759)
+..+.+-|.+.... .+++..+...+++++.+.+ +.++++.+++++.+.. .| +...+..|+-+|.+.|++++|
T Consensus 14 l~~~~~~y~~e~~~--~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 14 LLKFEKKFQSEKAA--GSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHT--TCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHcc--CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 34455555555554 4567777777888888777 5567888888877653 24 256777777788888888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHH
Q 004352 657 YCLLLENIDKGFIPSLSTIGRV 678 (759)
Q Consensus 657 ~~~~~~~~~~g~~p~~~~~~~l 678 (759)
+++++.+++ +.|++.-...+
T Consensus 91 ~~y~~~lL~--ieP~n~QA~~L 110 (152)
T 1pc2_A 91 LKYVRGLLQ--TEPQNNQAKEL 110 (152)
T ss_dssp HHHHHHHHH--HCTTCHHHHHH
T ss_pred HHHHHHHHh--cCCCCHHHHHH
Confidence 888888888 77866544444
No 216
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.46 E-value=0.00026 Score=71.18 Aligned_cols=87 Identities=6% Similarity=-0.087 Sum_probs=56.9
Q ss_pred cCChhhHHHHHHHHHHcc------CCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCC-HhhHHHHHH
Q 004352 579 SGDLDGAYQLFRRMEDQY------KISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEK-----G-CPPD-NYTYRIMID 645 (759)
Q Consensus 579 ~g~~~~A~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~p~-~~~~~~l~~ 645 (759)
.|++++|+.++++..+.. ..|....+++.++.+|...|++++|+.+++++++- | -.|+ ..+++.|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 456666666666665421 12333455666777777777777777777765532 2 1233 467888888
Q ss_pred HHHhcCChHHHHHHHHHHHh
Q 004352 646 SFCKTGGINSGYCLLLENID 665 (759)
Q Consensus 646 ~~~~~g~~~~A~~~~~~~~~ 665 (759)
.|...|++++|+.+++++++
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 88899999999988888875
No 217
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.36 E-value=0.0011 Score=54.21 Aligned_cols=85 Identities=16% Similarity=0.064 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC---ChHHHHHHHHHHHhCCCC-C--CHHHHHHHHHHHHhcCcHHHH
Q 004352 618 FYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTG---GINSGYCLLLENIDKGFI-P--SLSTIGRVINCLCVDHRVHEA 691 (759)
Q Consensus 618 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~g~~-p--~~~~~~~l~~~~~~~g~~~~A 691 (759)
...+.+.|.+..+.+ +++..+...+++++.+++ ++++++.++++.++ .. | +...++.+.-++++.|++++|
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~--~~~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLP--KGSKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH--HSCHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh--cCCccchHHHHHHHHHHHHHccCHHHH
Confidence 455667777776665 578899999999999998 67799999999998 44 6 356677788888999999999
Q ss_pred HHHHHHHHHCCCCCch
Q 004352 692 VGFVHLMVQKGIVPEV 707 (759)
Q Consensus 692 ~~~~~~~~~~~~~p~~ 707 (759)
.++++++++ +.|+.
T Consensus 91 ~~y~~~lL~--ieP~n 104 (152)
T 1pc2_A 91 LKYVRGLLQ--TEPQN 104 (152)
T ss_dssp HHHHHHHHH--HCTTC
T ss_pred HHHHHHHHh--cCCCC
Confidence 999999998 78863
No 218
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.29 E-value=0.0019 Score=48.61 Aligned_cols=67 Identities=9% Similarity=0.064 Sum_probs=58.7
Q ss_pred CccHHHHHHHHHHHHccCC---hhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004352 563 TLDTVAFGTLINGFCNSGD---LDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEK 631 (759)
Q Consensus 563 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 631 (759)
+.++..+..+..++...++ .++|..+++++... .|.++.+...++..+...|++++|+..|+++++.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5677888888888765555 78999999999998 8999999999999999999999999999999965
No 219
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.20 E-value=0.00086 Score=67.46 Aligned_cols=87 Identities=11% Similarity=0.023 Sum_probs=63.9
Q ss_pred cCCHHHHHHHHHHHHHC-----C--CCccHHHHHHHHHHHHccCChhhHHHHHHHHHHcc------CCCCchhhHHHHHH
Q 004352 544 AHKITEAFNLLEEMENK-----G--LTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQY------KISHTTATYNIMIN 610 (759)
Q Consensus 544 ~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~~l~~ 610 (759)
.|++++|..++++.++. | .+....+++.++.+|...|++++|+.+++++.+.. ..|....+++.++.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 45677777777766542 1 12224567788888888888888888888876532 24556778899999
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 004352 611 AFSEKLNFYMAEKLFYEMSE 630 (759)
Q Consensus 611 ~~~~~g~~~~A~~~~~~~~~ 630 (759)
+|..+|++++|+.+|+++++
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 99999999999999998764
No 220
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.11 E-value=0.003 Score=48.98 Aligned_cols=71 Identities=7% Similarity=0.050 Sum_probs=51.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----C-CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH
Q 004352 603 ATYNIMINAFSEKLNFYMAEKLFYEMSEKG-----C-PPDNYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSLSTI 675 (759)
Q Consensus 603 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 675 (759)
.-+..++..+...|++..|+..|+++.+.. . .+...++..|+.++.+.|+++.|+.+++++++ +.|+....
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~~~~ 82 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEHQRA 82 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCCHHH
Confidence 345567777777777777777777766531 1 12366788888888888999999999988888 77876544
No 221
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.05 E-value=0.0017 Score=65.50 Aligned_cols=91 Identities=13% Similarity=0.025 Sum_probs=66.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHC---CC----CccHHHHHHHHHHHHccCChhhHHHHHHHHHHcc------CCCCchhhHH
Q 004352 540 SLCKAHKITEAFNLLEEMENK---GL----TLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQY------KISHTTATYN 606 (759)
Q Consensus 540 ~~~~~~~~~~a~~~~~~~~~~---~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~ 606 (759)
.+...|++++|..++++.++. -+ +....+++.++.+|...|++++|+.+++++.... ..|....+++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 344567777777777777643 11 1224567788888888888888888888776532 2455567788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 004352 607 IMINAFSEKLNFYMAEKLFYEMSE 630 (759)
Q Consensus 607 ~l~~~~~~~g~~~~A~~~~~~~~~ 630 (759)
.++.+|...|++++|+.+++++++
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Confidence 899999999999999999998764
No 222
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.89 E-value=0.033 Score=51.11 Aligned_cols=83 Identities=7% Similarity=0.069 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHcCCCCC---HhhHHHHHHHHHh-----cCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHh-cC
Q 004352 618 FYMAEKLFYEMSEKGCPPD---NYTYRIMIDSFCK-----TGGINSGYCLLLENIDKGFIPS--LSTIGRVINCLCV-DH 686 (759)
Q Consensus 618 ~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~-~g 686 (759)
...|..+++++++. .|+ ...|..++..|.. -|+.++|...|+++++ +.|+ ..........++. .|
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~--LnP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR--YCSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH--HCCTTCSHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH--hCCCCCchHHHHHHHHHHHhcC
Confidence 56677777777754 465 4577777777777 3888888888888888 7774 3444445555555 48
Q ss_pred cHHHHHHHHHHHHHCCCC
Q 004352 687 RVHEAVGFVHLMVQKGIV 704 (759)
Q Consensus 687 ~~~~A~~~~~~~~~~~~~ 704 (759)
+.++|.+++++.++.+..
T Consensus 255 d~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPE 272 (301)
T ss_dssp CHHHHHHHHHHHHHCCGG
T ss_pred CHHHHHHHHHHHHcCCCC
Confidence 888888888888775554
No 223
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.73 E-value=0.012 Score=45.49 Aligned_cols=68 Identities=7% Similarity=-0.098 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHhcC-----CCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCC
Q 004352 39 TLLTYKYMIDKLGFHGNFEEMENLLLEMRMDV-----DDSLLEGVHIGVMRNYGRRGKVQEAVDVFERMDFYN 106 (759)
Q Consensus 39 ~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 106 (759)
+...+..++..+...|++.+|..+|+.+.... +......++..++.++.+.|+++.|+..++++....
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 45556677788888888888888887777643 111245677777777777777777777777776543
No 224
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.66 E-value=0.014 Score=45.76 Aligned_cols=92 Identities=10% Similarity=-0.081 Sum_probs=58.3
Q ss_pred hhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHH---HHHHHHHHHHcCCCC--CHhhHHHHHHHHHhcCChHHH
Q 004352 582 LDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYM---AEKLFYEMSEKGCPP--DNYTYRIMIDSFCKTGGINSG 656 (759)
Q Consensus 582 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A 656 (759)
+..+.+-|...... .+++..+-..+++++.+..+..+ ++.+++.+...+ .| .......|+-++.+.|+|++|
T Consensus 17 l~~~~~~y~~e~~~--~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 17 LLKFEKKFQSEKAA--GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHH--SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence 44445555555444 34566666777777777665555 777777776543 23 245556666777888888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHH
Q 004352 657 YCLLLENIDKGFIPSLSTIGRV 678 (759)
Q Consensus 657 ~~~~~~~~~~g~~p~~~~~~~l 678 (759)
+.+++.+++ ..|++.-...|
T Consensus 94 ~~~~~~lL~--~eP~n~QA~~L 113 (126)
T 1nzn_A 94 LKYVRGLLQ--TEPQNNQAKEL 113 (126)
T ss_dssp HHHHHHHHH--HCTTCHHHHHH
T ss_pred HHHHHHHHH--hCCCCHHHHHH
Confidence 888888887 77765544433
No 225
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.64 E-value=6e-05 Score=73.32 Aligned_cols=182 Identities=17% Similarity=0.226 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004352 77 GVHIGVMRNYGRRGKVQEAVDVFERMDFYNCEPTVLSYNTIMNILVEYGYFSQVHKVYMRMRNKGIVPDVYTFVIRIKSF 156 (759)
Q Consensus 77 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 156 (759)
.+|..++.++...+...+|++.|-+.. |+..|..++.+..+.|.+++.+..+.-..+.. .++.+=+.|+-+|
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsyIkA~------Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ay 126 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSYIKAD------DPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFAL 126 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSSCCCS------CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHH
T ss_pred cHHHHHHHHHHccCchHHHHHHHHhCC------ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHH
Confidence 455555555555555555555442222 33335555555555555555555544443332 2222333455555
Q ss_pred HccCChhhHHHHHhhchhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC--------------------CCCCh
Q 004352 157 CRTRRPHVALRLLKNMPSQGFEPNAVAYCTLIAGFYEENHNVEAYELFDEMLGMG--------------------ISPDI 216 (759)
Q Consensus 157 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------------------~~~~~ 216 (759)
++.++..+-.+++. .||..-...+..-|...|.++.|.-+|..+.... -..++
T Consensus 127 Ak~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ 199 (624)
T 3lvg_A 127 AKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANST 199 (624)
T ss_dssp HTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSS
T ss_pred HhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCCh
Confidence 55555443222211 1333334444444444444444444443332100 01244
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 004352 217 ATFNKLIHTLCKKGNVRESEKLFNKVLKRGVSPNLFTFNMFIQGLCRKGAISEAISLLDSLG 278 (759)
Q Consensus 217 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 278 (759)
.||..+-.+|...+.+..|.-.--.++-.. | -...++..|-..|.+++-+.+++.-.
T Consensus 200 ktWKeV~~ACvd~~EfrLAqicGLniIvha---d--eL~elv~~YE~~G~f~ELIsLlEagl 256 (624)
T 3lvg_A 200 RTWKEVCFACVDGKEFRLAQMCGLHIVVHA---D--ELEELINYYQDRGYFEELITMLEAAL 256 (624)
T ss_dssp CSHHHHTHHHHHSCTTTTTTHHHHHHHCCS---S--CCSGGGSSSSTTCCCTTSTTTHHHHT
T ss_pred hHHHHHHHHHhCchHHHHHHHhcchhcccH---H--HHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 556666666666666655544433333221 1 11123444555555555555555544
No 226
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.48 E-value=0.027 Score=51.70 Aligned_cols=81 Identities=12% Similarity=0.087 Sum_probs=62.4
Q ss_pred hhhHHHHHHHHHHccCCCC--chhhHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCC--HhhHHHHHHHHHh-cC
Q 004352 582 LDGAYQLFRRMEDQYKISH--TTATYNIMINAFSE-----KLNFYMAEKLFYEMSEKGCPPD--NYTYRIMIDSFCK-TG 651 (759)
Q Consensus 582 ~~~A~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~-~g 651 (759)
...|...++++.+. .|. +...|..++..|.. -|+.++|.++|+++++. .|+ ..++..++..++. .|
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--nP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--CSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--CCTTCSHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--CCCCCchHHHHHHHHHHHhcC
Confidence 56777788888887 665 56688888888887 48888888888888865 453 6777777777777 48
Q ss_pred ChHHHHHHHHHHHhC
Q 004352 652 GINSGYCLLLENIDK 666 (759)
Q Consensus 652 ~~~~A~~~~~~~~~~ 666 (759)
+.++|..++++++..
T Consensus 255 d~~~a~~~L~kAL~a 269 (301)
T 3u64_A 255 NRAGFDEALDRALAI 269 (301)
T ss_dssp CHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHcC
Confidence 888888888888883
No 227
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.46 E-value=0.08 Score=42.59 Aligned_cols=49 Identities=10% Similarity=0.006 Sum_probs=23.3
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004352 616 LNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCLLLENID 665 (759)
Q Consensus 616 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 665 (759)
++.++|.++|+.+++.+ +-=...|...+.--.++|++..|.+++.+++.
T Consensus 74 ~D~d~aR~vy~~a~~~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG 122 (161)
T 4h7y_A 74 QEPDDARDYFQMARANC-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVE 122 (161)
T ss_dssp HCGGGCHHHHHHHHHHC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc
Confidence 45555555555554321 11144444444444555555555555555555
No 228
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.46 E-value=0.018 Score=46.25 Aligned_cols=105 Identities=9% Similarity=0.054 Sum_probs=52.7
Q ss_pred CCchhhHHHHHHHHHhcCCH------HHHHHHHHHHHHcCCCCCH-hhHHHHHH------HHHhcCChHHHHHHHHHHHh
Q 004352 599 SHTTATYNIMINAFSEKLNF------YMAEKLFYEMSEKGCPPDN-YTYRIMID------SFCKTGGINSGYCLLLENID 665 (759)
Q Consensus 599 ~~~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~~~~p~~-~~~~~l~~------~~~~~g~~~~A~~~~~~~~~ 665 (759)
|.+..+|-..+...-..|+. ++.++.|+++... +||+. ..|...+. .+...+|.++|..+|+.+++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 44555555555554444554 5555555555543 34431 11111111 12334677777777777765
Q ss_pred CCCCCCHHHHHHHHHHH-HhcCcHHHHHHHHHHHHHCCCCCc
Q 004352 666 KGFIPSLSTIGRVINCL-CVDHRVHEAVGFVHLMVQKGIVPE 706 (759)
Q Consensus 666 ~g~~p~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~p~ 706 (759)
+...........+-+ .++|+...|.+++.+....+.+|.
T Consensus 89 --~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 89 --NCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp --HCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred --HhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 222222222333333 567777777777777776555554
No 229
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.29 E-value=0.2 Score=55.99 Aligned_cols=75 Identities=13% Similarity=0.073 Sum_probs=42.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004352 430 NIVINGLCKMGCVSDANNLVNDAISKGYIPDIFTFNTLIDGYCKQLKMEIAIEILNTMWSHGVTPDVITYNSLLNGLCKA 509 (759)
Q Consensus 430 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 509 (759)
..++..+.+.|..+.|.++.++ .. .-.......|+++.|.++.+.+ .+...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~---------~~---~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD---------QD---QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC---------HH---HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCC---------cc---hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 4555556666666666654421 11 1123345566777766664322 2556677777777777
Q ss_pred CCHHHHHHHHHHH
Q 004352 510 AKSEDVMETFKTM 522 (759)
Q Consensus 510 ~~~~~a~~~~~~~ 522 (759)
++++.|.++|.++
T Consensus 695 ~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 695 FNFKLAIEAFTNA 707 (814)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHc
Confidence 7777777666654
No 230
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.20 E-value=0.19 Score=56.06 Aligned_cols=45 Identities=18% Similarity=0.138 Sum_probs=23.0
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHH
Q 004352 542 CKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRM 592 (759)
Q Consensus 542 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 592 (759)
...|++++|.++.+.+ .+...|..++..+.+.|+++.|.+.|.++
T Consensus 663 l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3445555555543221 24455555555555555555555555544
No 231
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.15 E-value=0.041 Score=43.24 Aligned_cols=86 Identities=19% Similarity=0.113 Sum_probs=66.8
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHH---HHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCcHHHH
Q 004352 617 NFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINS---GYCLLLENIDKGFIP--SLSTIGRVINCLCVDHRVHEA 691 (759)
Q Consensus 617 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~g~~~~A 691 (759)
.+..+.+.|.+....+ .|+..+-..+++++.++.+..+ ++.+++...+.+ .| .....+.+.-++++.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence 3455666676666555 4788888899999999987766 999999988842 24 345556777778999999999
Q ss_pred HHHHHHHHHCCCCCc
Q 004352 692 VGFVHLMVQKGIVPE 706 (759)
Q Consensus 692 ~~~~~~~~~~~~~p~ 706 (759)
.++++.+++ +.|+
T Consensus 94 ~~~~~~lL~--~eP~ 106 (126)
T 1nzn_A 94 LKYVRGLLQ--TEPQ 106 (126)
T ss_dssp HHHHHHHHH--HCTT
T ss_pred HHHHHHHHH--hCCC
Confidence 999999998 6776
No 232
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.07 E-value=0.27 Score=41.43 Aligned_cols=100 Identities=7% Similarity=0.041 Sum_probs=65.2
Q ss_pred HhCCChHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCChhHH
Q 004352 51 GFHGNFEEMENLLLEMRMDVDDSLLEGVHIGVMRNYGRRGKVQEAVDVFERMDFYNCEPTVLSYNTIMNILVEYGYFSQV 130 (759)
Q Consensus 51 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 130 (759)
...|+++.|.++.+.+ . +...|..++.....+|+++-|..+|.+... +..+.-.|.-.|+.+..
T Consensus 16 L~lg~l~~A~e~a~~l-----~--~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL-----N--DSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHTTCHHHHHHHHHHH-----C--CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HhcCCHHHHHHHHHHh-----C--CHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 4678888887776554 2 566788888888888888888888877662 33444556667776666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHhhc
Q 004352 131 HKVYMRMRNKGIVPDVYTFVIRIKSFCRTRRPHVALRLLKNM 172 (759)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 172 (759)
.++-+.....| -++.....+...|+++++.++|.+.
T Consensus 80 ~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 80 SKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 55555544443 1344455556667777777777543
No 233
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.01 E-value=2.1e-05 Score=76.37 Aligned_cols=224 Identities=11% Similarity=0.109 Sum_probs=128.8
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 004352 180 NAVAYCTLIAGFYEENHNVEAYELFDEMLGMGISPDIATFNKLIHTLCKKGNVRESEKLFNKVLKRGVSPNLFTFNMFIQ 259 (759)
Q Consensus 180 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 259 (759)
.+.+|..|..+....+...+|++.|-+. -|+..|..++.+..+.|.++.-...+....+..- ++.+=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHH
Confidence 3456777777777777777777665321 2556677778888888888877777766655422 3334456777
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHHcCChhH
Q 004352 260 GLCRKGAISEAISLLDSLGREDLTPDVVTYNTLMCGLCKNSKVVEAEYYLHKMVNEGLEPDGFSYNAVIDGYCKAGMISS 339 (759)
Q Consensus 260 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 339 (759)
+|++.++..+-.+++. .||..-...+.+-|...|.++.|.-+|..+.. |..|...+.+.|++..
T Consensus 125 ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq~ 188 (624)
T 3lvg_A 125 ALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQA 188 (624)
T ss_dssp HHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGS
T ss_pred HHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHH
Confidence 7777776554333221 45666666666666677777666555543322 2222333445555555
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004352 340 ADKILNDAIFKGFVPDEFTYCSLINGLCQDGDVDRAMAVYVKALEKGLKPSIVLYNTLIKGLSQQGLILQALQLMNEMSE 419 (759)
Q Consensus 340 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 419 (759)
|.+.-++ ..++.+|..+-.+|...+++.-|..+--.++-. +.....++..|-..|.+++-+.+++.-..
T Consensus 189 AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglg 257 (624)
T 3lvg_A 189 AVDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALG 257 (624)
T ss_dssp STTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTT
T ss_pred HHHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhC
Confidence 5433221 226667777777777777766665554443321 12223345556666777777776666553
Q ss_pred CCCCCCHHHHHHHHHHHHhc
Q 004352 420 SGCCPDMWTYNIVINGLCKM 439 (759)
Q Consensus 420 ~~~~~~~~~~~~l~~~~~~~ 439 (759)
. -+...-.++-+.-.|++-
T Consensus 258 l-ErAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 258 L-ERAHMGMFTELAILYSKF 276 (624)
T ss_dssp S-TTCCHHHHHHHHHHHHSS
T ss_pred C-CchhHHHHHHHHHHHHhc
Confidence 2 123444555555555553
No 234
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.88 E-value=0.56 Score=39.49 Aligned_cols=44 Identities=14% Similarity=0.252 Sum_probs=21.5
Q ss_pred hcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHH
Q 004352 543 KAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRM 592 (759)
Q Consensus 543 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 592 (759)
..|+++.|.++.+.+ .+...|..+.......|+++-|.+.|.+.
T Consensus 17 ~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 345555555544433 13444555555555555555555555444
No 235
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.79 E-value=3 Score=45.73 Aligned_cols=263 Identities=10% Similarity=0.003 Sum_probs=134.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCC---HH--HHHHHHHH
Q 004352 365 GLCQDGDVDRAMAVYVKALEKGLKPS--IVLYNTLIKGLSQQGLILQALQLMNEMSESGC--CPD---MW--TYNIVING 435 (759)
Q Consensus 365 ~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~---~~--~~~~l~~~ 435 (759)
+....|+.++++.++......+...+ ...-..+.-+....|...++..++.......- .-+ .. .-..+.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 35566777777777766554210112 22333344445556665667777766554311 000 11 11122222
Q ss_pred HHhcCC-hHHHHHHHHHHHHCCCCCCH--hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH--HHHHHHhcC
Q 004352 436 LCKMGC-VSDANNLVNDAISKGYIPDI--FTFNTLIDGYCKQLKMEIAIEILNTMWSHGVTPDVITYNS--LLNGLCKAA 510 (759)
Q Consensus 436 ~~~~~~-~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~ 510 (759)
..-.|. -+++...+..++... .+.. ..-.++...+...|+.+....+++.+.+.. +...... +.-++...|
T Consensus 463 la~~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g 538 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYG 538 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTT
T ss_pred HHhcCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCC
Confidence 222332 245566666655532 1111 112233344556778777777777776642 2233333 333444678
Q ss_pred CHHHHHHHHHHHHHcCCCCChh--cHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHH
Q 004352 511 KSEDVMETFKTMIEKRCVPNII--TYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQL 588 (759)
Q Consensus 511 ~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 588 (759)
+.+.+-.+.+.+.... .|... ....++-+|+..|+......++..+... ...+......+.-++...|+.+.+.++
T Consensus 539 ~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 539 RQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp CGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred ChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 8888777777776531 22221 1223455667788887777788888764 223333333333344456777767777
Q ss_pred HHHHHHccCCCCchhhHHHHH--HHHHhcCC-HHHHHHHHHHHHHcCCCCCHhhH
Q 004352 589 FRRMEDQYKISHTTATYNIMI--NAFSEKLN-FYMAEKLFYEMSEKGCPPDNYTY 640 (759)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~ 640 (759)
++.+.+. . ++.+-...+ -+....|+ ..+|+..+..+.. .+|..+-
T Consensus 617 v~~L~~~--~--d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vr 664 (963)
T 4ady_A 617 VQLLSKS--H--NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVR 664 (963)
T ss_dssp TTTGGGC--S--CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHH
T ss_pred HHHHHhc--C--CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHH
Confidence 6655543 2 333333333 33333444 3678888888863 3554433
No 236
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.63 E-value=0.61 Score=36.66 Aligned_cols=65 Identities=18% Similarity=0.166 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 004352 498 TYNSLLNGLCKAAKSEDVMETFKTMIEKRCVPNIITYSILGESLCKAHKITEAFNLLEEMENKGLT 563 (759)
Q Consensus 498 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 563 (759)
.....+.....+|+.++--+++..+... .+|++..+..+..+|.+.|+..++.+++.++-+.|++
T Consensus 93 ~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 93 HVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 3444445555666666666666664332 3555666666666666666666666666666665543
No 237
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.44 E-value=0.33 Score=38.81 Aligned_cols=78 Identities=6% Similarity=-0.010 Sum_probs=49.6
Q ss_pred CCchhhHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH
Q 004352 599 SHTTATYNIMINAFSEKLN---FYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSLSTI 675 (759)
Q Consensus 599 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 675 (759)
.++..+-..+++++.+..+ ..+++.+++.+...+-.-.......|.-++.+.|+|++|+++.+.+++ ..|++.-.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n~QA 113 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNKQV 113 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCCHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCcHHH
Confidence 4556666667777776654 345677777776643111245566666777888888888888888887 77765544
Q ss_pred HHH
Q 004352 676 GRV 678 (759)
Q Consensus 676 ~~l 678 (759)
..|
T Consensus 114 ~~L 116 (144)
T 1y8m_A 114 GAL 116 (144)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 238
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.38 E-value=4.1 Score=44.64 Aligned_cols=153 Identities=12% Similarity=0.063 Sum_probs=67.8
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCChHHHHHHHHHHHHCCCCCCHhhH--HHHHHHHHhcCC
Q 004352 401 LSQQGLILQALQLMNEMSESGCCPDMWTYNIVING--LCKMGCVSDANNLVNDAISKGYIPDIFTF--NTLIDGYCKQLK 476 (759)
Q Consensus 401 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~ 476 (759)
+.-.|+.+....++..+.+. .+......+.-+ +...|+.+.+..+.+.+.... .|....- ..+.-+|+..|+
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~---~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn 575 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQET---QHGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGN 575 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCC
T ss_pred hcccCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCC
Confidence 33445555555555555543 122222223333 335566666666666665431 1111111 123334566677
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCH-HHHHHHHH
Q 004352 477 MEIAIEILNTMWSHGVTPDVITYNSLLNGLCKAAKSEDVMETFKTMIEKRCVPNIITYSILGESLCKAHKI-TEAFNLLE 555 (759)
Q Consensus 477 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~ 555 (759)
.....++++.+.+.. ..++.....+.-++...|+.+.+.++++.+.+.+ .|....-..+.-+....|+. .++...+.
T Consensus 576 ~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~ 653 (963)
T 4ady_A 576 NSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLD 653 (963)
T ss_dssp HHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 666666777666541 1122222222233344555555555555444432 22222222222222223322 45666666
Q ss_pred HHHH
Q 004352 556 EMEN 559 (759)
Q Consensus 556 ~~~~ 559 (759)
.+..
T Consensus 654 ~L~~ 657 (963)
T 4ady_A 654 PLTK 657 (963)
T ss_dssp HHHT
T ss_pred HHcc
Confidence 6653
No 239
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=95.08 E-value=2.3 Score=44.70 Aligned_cols=314 Identities=10% Similarity=0.020 Sum_probs=154.6
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 004352 366 LCQDGDVDRAMAVYVKALEKGLKPSIVLYNTLIKGLSQQGLILQALQLMNEMSESGCCPDMWTYNIVINGLCKMGCVSDA 445 (759)
Q Consensus 366 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 445 (759)
..+.|+++.+..+...+....+. ....|..+.... ......+....+.+... .+.....-...+..+.+.+++...
T Consensus 16 a~~~~~~~~~~~l~~~l~~~pL~-~yl~y~~l~~~l-~~~~~~ev~~Fl~~~~~--~p~~~~Lr~~~l~~l~~~~~w~~~ 91 (618)
T 1qsa_A 16 AWDNRQMDVVEQMMPGLKDYPLY-PYLEYRQITDDL-MNQPAVTVTNFVRANPT--LPPARTLQSRFVNELARREDWRGL 91 (618)
T ss_dssp HHHTTCHHHHHHHSGGGTTSTTH-HHHHHHHHHHTG-GGCCHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHCCCHHHHHHHHHhhcCCCcH-HHHHHHHHHhCc-ccCCHHHHHHHHHHCCC--ChhHHHHHHHHHHHHHhCCCHHHH
Confidence 34567777776665544322111 111232222211 12244544444443221 111122334445566677777766
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHH
Q 004352 446 NNLVNDAISKGYIPDIFTFNTLIDGYCKQLKMEIAIEILNTMWSHGVTPDVITYNSLLNGLCKAAKSE--DVMETFKTMI 523 (759)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~ 523 (759)
..++.. .+.+...-.....+....|+..+|......+-..|. ..+..+..++..+.+.|... ....-+..+.
T Consensus 92 l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al 165 (618)
T 1qsa_A 92 LAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLFSVWRASGKQDPLAYLERIRLAM 165 (618)
T ss_dssp HHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 654432 244555555666777788888878777777665542 24456677777777666443 3344444444
Q ss_pred HcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHH--------------HHHHHHccCChhhHHHHH
Q 004352 524 EKRCVPNIITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGT--------------LINGFCNSGDLDGAYQLF 589 (759)
Q Consensus 524 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--------------l~~~~~~~g~~~~A~~~~ 589 (759)
..+ +......+...+ . .........+..+.+. +++...... .+.-+ ...+.+.|...+
T Consensus 166 ~~~---~~~~a~~l~~~l-~-~~~~~~a~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~rl-ar~d~~~A~~~~ 237 (618)
T 1qsa_A 166 KAG---NTGLVTVLAGQM-P-ADYQTIASAIISLANN--PNTVLTFARTTGATDFTRQMAAVAFASV-ARQDAENARLMI 237 (618)
T ss_dssp HTT---CHHHHHHHHHTC-C-GGGHHHHHHHHHHHHC--GGGHHHHHHHSCCCHHHHHHHHHHHHHH-HHHCHHHHHHHH
T ss_pred HCC---CHHHHHHHHHhC-C-HHHHHHHHHHHHHHhC--hHhHHHHHhccCCChhhHHHHHHHHHHH-HhcCHHHHHHHH
Confidence 443 222222222211 0 1111111222223322 223222211 11112 234678888888
Q ss_pred HHHHHccCCCCch--hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 004352 590 RRMEDQYKISHTT--ATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCLLLENIDKG 667 (759)
Q Consensus 590 ~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 667 (759)
..........+.. ..+..++..+...+...++...+.+.... .++.....-.+....+.|+++.|...|..+...
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~- 314 (618)
T 1qsa_A 238 PSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGLNTWLARLPME- 314 (618)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTT-
T ss_pred HhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHHHHHHHHcccc-
Confidence 8776543221111 11122222333344355666677665543 333333333333344678899988888876541
Q ss_pred CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 004352 668 FIPSLSTIGRVINCLCVDHRVHEAVGFVHLMVQ 700 (759)
Q Consensus 668 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 700 (759)
......-.+.+...+...|+.++|..+|+++..
T Consensus 315 ~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 315 AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 111233445666666788898889888888864
No 240
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=95.02 E-value=0.25 Score=38.90 Aligned_cols=75 Identities=7% Similarity=-0.004 Sum_probs=47.0
Q ss_pred CchhhHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCC-C-HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH
Q 004352 600 HTTATYNIMINAFSEKLN---FYMAEKLFYEMSEKGCPP-D-NYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSLST 674 (759)
Q Consensus 600 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 674 (759)
+++.+-..+++++.+..+ ..+++.+++.+.+.+ | . ...+..|+-++.+.|++++|+++.+.+++ ..|++.-
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N~Q 113 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNKQ 113 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTCHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCCHH
Confidence 344555566666665543 345666676666543 3 2 45666666777777777777777777777 6776554
Q ss_pred HHHH
Q 004352 675 IGRV 678 (759)
Q Consensus 675 ~~~l 678 (759)
...+
T Consensus 114 A~~L 117 (134)
T 3o48_A 114 VGAL 117 (134)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 241
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=94.87 E-value=0.22 Score=41.11 Aligned_cols=55 Identities=5% Similarity=-0.124 Sum_probs=28.0
Q ss_pred HHHhcCCChHHHHHHHHHhhhcCCCCCC---H----HHHHHHHHHHHhCCChHHHHHHHHHH
Q 004352 12 AVVKHQKNPLTALEMFNSVKREDGFKHT---L----LTYKYMIDKLGFHGNFEEMENLLLEM 66 (759)
Q Consensus 12 ~~l~~~~~~~~A~~~~~~~~~~~~~~~~---~----~~~~~l~~~l~~~~~~~~A~~~~~~~ 66 (759)
.-+-..+-++.|.-..+.+....+..|+ + .++..++.++...|+|.+|...|+.+
T Consensus 28 k~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 28 RDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3334455566665555554332211222 1 24455666666666666666666664
No 242
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=94.42 E-value=2.7 Score=41.14 Aligned_cols=131 Identities=13% Similarity=0.004 Sum_probs=62.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC---CHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCChhcH--
Q 004352 462 FTFNTLIDGYCKQLKMEIAIEILNTMWSH-GVTP---DVITYNSLLNGLCKA-AKSEDVMETFKTMIEKRCVPNIITY-- 534 (759)
Q Consensus 462 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~-- 534 (759)
.....|...|.+.|+.++..+++...... +..| .......++..+... +..+.-.++..+.++-. .-...+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 45566777888888888877777765432 0011 122344455555442 22333333333333210 0011122
Q ss_pred ----HHHHHHHHhcCCHHHHHHHHHHHHHC--CCCcc---HHHHHHHHHHHHccCChhhHHHHHHHHH
Q 004352 535 ----SILGESLCKAHKITEAFNLLEEMENK--GLTLD---TVAFGTLINGFCNSGDLDGAYQLFRRME 593 (759)
Q Consensus 535 ----~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 593 (759)
..++..|...|++.+|..++..+.+. ..... .+++..-+..|...+++.++...+..+.
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 14555566666666666666555542 11101 1223334455555666666666665554
No 243
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.10 E-value=0.38 Score=51.46 Aligned_cols=53 Identities=9% Similarity=0.014 Sum_probs=33.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHH
Q 004352 609 INAFSEKLNFYMAEKLFYEMSEKGCPPD-NYTYRIMIDSFCKTGGINSGYCLLLEN 663 (759)
Q Consensus 609 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 663 (759)
+..+...|+++-|+++.++++.. .|+ ..+|..|..+|...|+++.|+-.+..+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 34455566677777777766654 343 666777777777777777776666554
No 244
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.03 E-value=5.1 Score=40.34 Aligned_cols=164 Identities=15% Similarity=0.064 Sum_probs=90.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC--CCCcc---HHHHHHHHHHHHccCChhhHHHHHHHHHHcc-CCCCc----hhh
Q 004352 535 SILGESLCKAHKITEAFNLLEEMENK--GLTLD---TVAFGTLINGFCNSGDLDGAYQLFRRMEDQY-KISHT----TAT 604 (759)
Q Consensus 535 ~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~----~~~ 604 (759)
..++..+...|++.+|..++..+... +.... ...+...++.|...+++..|..++.++.... ..+++ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 46777788888888888888887642 21111 2355666778888889988888888764311 12222 244
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHhhH----HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004352 605 YNIMINAFSEKLNFYMAEKLFYEMSEKG-CPPDNYTY----RIMIDSFCKTGGINSGYCLLLENIDKGFIPSLSTIGRVI 679 (759)
Q Consensus 605 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 679 (759)
+...+..+...++|.+|-+.|.++.+.. ...|...+ ..++.+..-.+....--.++.+.......++.+.+..++
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~ 300 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLV 300 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHH
Confidence 5666777788888888888887775431 11122222 112221122221122222222222211224455666666
Q ss_pred HHHH--hcCcHHHHHHHHHHH
Q 004352 680 NCLC--VDHRVHEAVGFVHLM 698 (759)
Q Consensus 680 ~~~~--~~g~~~~A~~~~~~~ 698 (759)
..+. ...+|+.+.+.+...
T Consensus 301 k~f~~~~L~~~~~~~~~~~~~ 321 (445)
T 4b4t_P 301 KLFTTNELMRWPIVQKTYEPV 321 (445)
T ss_dssp HHHHHCCSSSHHHHHHHTCSS
T ss_pred HHHHhchHhhhHHHHHHHHHH
Confidence 6663 345677766666554
No 245
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.96 E-value=5.8 Score=39.90 Aligned_cols=99 Identities=11% Similarity=-0.048 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCc----hhhHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCC--
Q 004352 567 VAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHT----TATYNIMINAFSEKLNFYMAEKLFYEMSE----KGCPPD-- 636 (759)
Q Consensus 567 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~-- 636 (759)
.....++..|...|++.+|.+++..+........+ ...+...++.|...+++..|..+++++.. ...+|+
T Consensus 138 rl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk 217 (445)
T 4b4t_P 138 RVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLK 217 (445)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHH
Confidence 34567889999999999999999998754222222 45677778999999999999999998743 222233
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004352 637 NYTYRIMIDSFCKTGGINSGYCLLLENID 665 (759)
Q Consensus 637 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 665 (759)
...+...+..+...++|.+|-..|.++.+
T Consensus 218 ~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 218 LEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 24556677788899999999999998875
No 246
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=93.85 E-value=1.6 Score=35.01 Aligned_cols=70 Identities=7% Similarity=-0.108 Sum_probs=57.9
Q ss_pred CCCHhhHHHHHHHHHhcCCh---HHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCch
Q 004352 634 PPDNYTYRIMIDSFCKTGGI---NSGYCLLLENIDKGFIP--SLSTIGRVINCLCVDHRVHEAVGFVHLMVQKGIVPEV 707 (759)
Q Consensus 634 ~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 707 (759)
.|+..+-..+.+++.++.+. .+++.+++...+ -.| .....+.+.-++++.|++++|.++.+.+++ +.|+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~--~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYK--EAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHH--HCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh--cCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCc
Confidence 57788888899999998764 578999999988 445 456667788888999999999999999999 77873
No 247
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.83 E-value=1.9 Score=33.93 Aligned_cols=137 Identities=14% Similarity=0.071 Sum_probs=78.3
Q ss_pred cCCChHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHH
Q 004352 16 HQKNPLTALEMFNSVKREDGFKHTLLTYKYMIDKLGFHGNFEEMENLLLEMRMDVDDSLLEGVHIGVMRNYGRRGKVQEA 95 (759)
Q Consensus 16 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 95 (759)
..|..++..++.......+ +..-|++++--...+-+=+-..+.++.+-+.+.- ...|++...
T Consensus 19 ldG~v~qGveii~k~~~ss----ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKrV 80 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKSS----TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKSV 80 (172)
T ss_dssp HTTCHHHHHHHHHHHHHHS----CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHHH
T ss_pred HhhhHHHHHHHHHHHcCCC----CccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHHH
Confidence 3566666666666544432 2344455554444455555555555555554422 245556666
Q ss_pred HHHHHHhhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHhhchhC
Q 004352 96 VDVFERMDFYNCEPTVLSYNTIMNILVEYGYFSQVHKVYMRMRNKGIVPDVYTFVIRIKSFCRTRRPHVALRLLKNMPSQ 175 (759)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 175 (759)
+.++-.+- .+..-....+..+..+|.-++..+++..+... -+|++.....+..+|.+.|+..+|.+++.+.-+.
T Consensus 81 i~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 81 VECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 66665543 23333455566667777777777777775442 2466666667777777777777777777776666
Q ss_pred C
Q 004352 176 G 176 (759)
Q Consensus 176 ~ 176 (759)
|
T Consensus 155 G 155 (172)
T 1wy6_A 155 G 155 (172)
T ss_dssp T
T ss_pred h
Confidence 5
No 248
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=93.55 E-value=0.28 Score=40.45 Aligned_cols=125 Identities=6% Similarity=0.009 Sum_probs=63.0
Q ss_pred HHHHHHHHHccCChhhHHHHHHHHHHccCCCCch-------hhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHhh
Q 004352 569 FGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTT-------ATYNIMINAFSEKLNFYMAEKLFYEMSEK--GCPPDNYT 639 (759)
Q Consensus 569 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~ 639 (759)
+..-+..+...|.++.|+-+...+......+++. .++..+++++...+++..|...|+++++. .+.....+
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 3444556666777777777766655542222221 23455556666666666666666665432 11111111
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCc
Q 004352 640 YRIMIDSFCKTGGINSGYCLLLENIDKGFIPSLSTIGRVINCLCVDHRVHEAVGFVHLMVQKGIVPE 706 (759)
Q Consensus 640 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 706 (759)
...+.. ...... -.. +.++.+.-+.+..|+.+.|++++|+.+++.+..+.-.|.
T Consensus 103 ~~~~~~----~ss~p~-------s~~--~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~k 156 (167)
T 3ffl_A 103 RPSTGN----SASTPQ-------SQC--LPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPK 156 (167)
T ss_dssp -------------------------C--CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHH
T ss_pred cccccc----cCCCcc-------ccc--ccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHH
Confidence 111100 000000 001 223445556777788899999999999988765444454
No 249
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=93.51 E-value=0.76 Score=36.25 Aligned_cols=70 Identities=7% Similarity=-0.084 Sum_probs=57.8
Q ss_pred CCCHhhHHHHHHHHHhcCCh---HHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCch
Q 004352 634 PPDNYTYRIMIDSFCKTGGI---NSGYCLLLENIDKGFIP--SLSTIGRVINCLCVDHRVHEAVGFVHLMVQKGIVPEV 707 (759)
Q Consensus 634 ~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 707 (759)
.|++.+-..+++++.++.+. .+++.+++.+.+. .| ....++.+.-++++.|++++|.++.+.+++ +.|+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~--~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N 111 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 111 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTC
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCC
Confidence 57788888899999988764 5789999999883 46 356677888888999999999999999998 77873
No 250
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.33 E-value=1.6 Score=43.19 Aligned_cols=74 Identities=7% Similarity=-0.082 Sum_probs=54.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCCCCHHHHHHH
Q 004352 604 TYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCLLLENID-----KGFIPSLSTIGRV 678 (759)
Q Consensus 604 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~p~~~~~~~l 678 (759)
+...++..+...|++.+|+..++.+.... +-+...|..++.++.+.|+..+|+..|++..+ .|+.|+..+-...
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 34456677778888888888888887653 44677888888888888888888888887643 3888876655433
No 251
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.17 E-value=0.98 Score=44.66 Aligned_cols=71 Identities=14% Similarity=0.134 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH-----CCCCCCHHHH
Q 004352 78 VHIGVMRNYGRRGKVQEAVDVFERMDFYNCEPTVLSYNTIMNILVEYGYFSQVHKVYMRMRN-----KGIVPDVYTF 149 (759)
Q Consensus 78 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 149 (759)
+...++..+...|++++|+..+..+.... +.+...|..++.++.+.|+..+|++.|+++.+ .|+.|+..+-
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 34445566666666666666666665443 44556666666777777777777666666543 2666665543
No 252
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=93.13 E-value=0.95 Score=40.92 Aligned_cols=58 Identities=14% Similarity=0.158 Sum_probs=39.0
Q ss_pred HHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 004352 575 GFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPD 636 (759)
Q Consensus 575 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 636 (759)
...+.|++++|+.....-++. .|.|...-..++..++-.|+++.|.+-++.+.+. .|+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--~p~ 63 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPE 63 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGG
T ss_pred HHHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--Cch
Confidence 345667777777777766666 6777777777777777777777777777766644 454
No 253
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=92.22 E-value=7.9 Score=36.59 Aligned_cols=167 Identities=11% Similarity=0.041 Sum_probs=92.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH----HHHHHcCCCCChhcHHHHH
Q 004352 463 TFNTLIDGYCKQLKMEIAIEILNTMWSHGVTPDVITYNSLLNGLCKAAKSEDVMETF----KTMIEKRCVPNIITYSILG 538 (759)
Q Consensus 463 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~~~~~~~~~~~~~~~~l~ 538 (759)
++.++..-|.+.+++++|++++..-.. .+.+.|+...|.++. +-+.+.+++++......++
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA~---------------~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVSQ---------------TLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 344455568888888888887654332 244556665554443 4444557788888877888
Q ss_pred HHHHhcCCH-HHHHHHHHHHHH----CC--CCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHH
Q 004352 539 ESLCKAHKI-TEAFNLLEEMEN----KG--LTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINA 611 (759)
Q Consensus 539 ~~~~~~~~~-~~a~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 611 (759)
..+.....- ..=..+.+++++ .| ..-|+.....+...|.+.+++.+|...|- . +..+.+..+..+..-
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l---g~~~s~~~~a~mL~e 176 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--L---GTKESPEVLARMEYE 176 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--T---SCTTHHHHHHHHHHH
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--h---cCCchHHHHHHHHHH
Confidence 777655431 122334444432 12 23467777778888888888888877772 1 122223444444333
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 004352 612 FSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCLLLENI 664 (759)
Q Consensus 612 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 664 (759)
+...+... ++|..+-..++ -|.-.++...|...+....
T Consensus 177 w~~~~~~~--------------e~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 177 WYKQDESH--------------TAPLYCARAVL-PYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHHTSCGG--------------GHHHHHHHHHH-HHHHTTCHHHHHHHHHHHH
T ss_pred HHHhcCCc--------------cHHHHHHHHHH-HHHHhCCHHHHHHHHHHHH
Confidence 32222111 11222223333 3566788888888766654
No 254
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=91.54 E-value=0.97 Score=48.42 Aligned_cols=50 Identities=8% Similarity=-0.020 Sum_probs=25.5
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHH
Q 004352 542 CKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRM 592 (759)
Q Consensus 542 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 592 (759)
...|+++.|..+-++.... .|.+..+|..|+.+|...|+++.|+-.+..+
T Consensus 348 l~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 348 LNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred hccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3445555555555555543 3344555555555555555555555544443
No 255
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=90.23 E-value=1.5 Score=32.29 Aligned_cols=62 Identities=11% Similarity=0.127 Sum_probs=45.5
Q ss_pred CHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHH
Q 004352 546 KITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMI 609 (759)
Q Consensus 546 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 609 (759)
+.-+..+-++.+...+.-|++.+..+.+++|.+.+++..|+++++.+..+.+. ...+|..++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~--~~~iY~~~l 86 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP--HKEIYPYVI 86 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT--CTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC--chhhHHHHH
Confidence 34456666777777778888888888888998889999999998888877433 334555444
No 256
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=89.81 E-value=5.9 Score=45.75 Aligned_cols=210 Identities=13% Similarity=0.123 Sum_probs=106.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccC
Q 004352 501 SLLNGLCKAAKSEDVMETFKTMIEKRCVPNIITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSG 580 (759)
Q Consensus 501 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 580 (759)
.++..+...+.++-+.++..-. +-++.....++.++...|++++|..+|++.-.. +..+.... .
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~-~~~~~~l~----------~ 880 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLV-LYSHTSQF----------A 880 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCS-CTTCCCSC----------S
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhh-hcccchhh----------h
Confidence 4555566667776665543322 223444456677777788888888887765321 11110000 0
Q ss_pred ChhhHHHHHHHHHHccC-CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----hhHHHHHHHHHhcCChHH
Q 004352 581 DLDGAYQLFRRMEDQYK-ISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDN----YTYRIMIDSFCKTGGINS 655 (759)
Q Consensus 581 ~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~ 655 (759)
... -+..+..... ...-...|..++..+.+.|.++.++++.+.+++..-+.+. ..|..+...+...|++++
T Consensus 881 ~~~----~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~ 956 (1139)
T 4fhn_B 881 VLR----EFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDA 956 (1139)
T ss_dssp SHH----HHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGG
T ss_pred hhc----ccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHH
Confidence 000 0111111100 1112344566667777777777777777777654212221 146667777777888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHH------------HHHHHHHHHHH----CCCCCchHHHHHhc--ccc
Q 004352 656 GYCLLLENIDKGFIPSLSTIGRVINCLCVDHRVH------------EAVGFVHLMVQ----KGIVPEVVNTIFEA--DKR 717 (759)
Q Consensus 656 A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~------------~A~~~~~~~~~----~~~~p~~~~~~~~~--~~~ 717 (759)
|...+-.+.. ..-....+..++..++..|..+ +..+++..-.+ -.-.|+.+.-++.. .+|
T Consensus 957 Ay~aL~~~pd--~~~r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~ 1034 (1139)
T 4fhn_B 957 AHVALMVLST--TPLKKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQ 1034 (1139)
T ss_dssp GGHHHHHHHH--SSSCHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCC--HHHHHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccC
Confidence 8777766655 2223455555655555444433 33333322111 11234434434433 444
Q ss_pred c-cccchHHHHHHHhc
Q 004352 718 E-VASPKIVVEDLLKK 732 (759)
Q Consensus 718 ~-~~~a~~~~~~~~~~ 732 (759)
+ ..-|..+|+++.+.
T Consensus 1035 dyR~AA~vmYe~~~RL 1050 (1139)
T 4fhn_B 1035 NYRDAAAIIYEKLSRY 1050 (1139)
T ss_dssp TTSCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHh
Confidence 4 45566778877664
No 257
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=89.63 E-value=6.9 Score=45.17 Aligned_cols=51 Identities=14% Similarity=0.099 Sum_probs=27.4
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 004352 46 MIDKLGFHGNFEEMENLLLEMRMDVDDSLLEGVHIGVMRNYGRRGKVQEAVDVFERM 102 (759)
Q Consensus 46 l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 102 (759)
++..|...+..+.|.++..-. +. +....+.+++++...|++++|..+|.+.
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~----~~--~~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWL----NS--DPIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHS----CC--CHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHhhhHHHHHHHhhhc----cC--CcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 444455555555554432211 22 3333455666777777777777777654
No 258
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=89.43 E-value=14 Score=34.65 Aligned_cols=112 Identities=14% Similarity=0.093 Sum_probs=61.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH----HHHHHHcCCCCChhcHHHHHH
Q 004352 464 FNTLIDGYCKQLKMEIAIEILNTMWSHGVTPDVITYNSLLNGLCKAAKSEDVMET----FKTMIEKRCVPNIITYSILGE 539 (759)
Q Consensus 464 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~l~~ 539 (759)
|.++..-|.+++++++|++++..-.. .+.+.|+...|.++ .+-..+.+.+++......++.
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~ 100 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVR 100 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 34445557777777777777554332 23445665554443 333444566777777777776
Q ss_pred HHHhcCCH-HHHHHHHHHHHH----CC--CCccHHHHHHHHHHHHccCChhhHHHHHH
Q 004352 540 SLCKAHKI-TEAFNLLEEMEN----KG--LTLDTVAFGTLINGFCNSGDLDGAYQLFR 590 (759)
Q Consensus 540 ~~~~~~~~-~~a~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 590 (759)
.+...... ..-.++++.+++ .| ..-++.....+...|.+.|++.+|...|-
T Consensus 101 l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 101 LIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 66543211 112333333332 11 12366666777777777777777776663
No 259
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=88.94 E-value=2.5 Score=38.26 Aligned_cols=55 Identities=18% Similarity=0.225 Sum_probs=37.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHc
Q 004352 540 SLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQ 595 (759)
Q Consensus 540 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 595 (759)
...+.|+.++++.....-++. -|.|...-..++..+|-.|++++|.+-++.+.+.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~-~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKA-SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHT-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHh-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 344567777777777666665 3556666666777777777777777777776666
No 260
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.21 E-value=6.7 Score=39.26 Aligned_cols=120 Identities=12% Similarity=0.026 Sum_probs=77.3
Q ss_pred CHHHHHHHHHHHHHCCC-Cc-cHHHHHHHHHHHHccCChhhHHHHHHHHHHccCC-CCchhhHHHHHHHHHhcCCHHHHH
Q 004352 546 KITEAFNLLEEMENKGL-TL-DTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKI-SHTTATYNIMINAFSEKLNFYMAE 622 (759)
Q Consensus 546 ~~~~a~~~~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 622 (759)
..++.....+...+... .. -..+...++..|.+.|++++|.+.|.++...... ..-...+..+++++...+++..+.
T Consensus 109 ~l~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~ 188 (429)
T 4b4t_R 109 KIKELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVK 188 (429)
T ss_dssp CHHHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHH
Confidence 34555555555554321 11 2335677888899999999999999988775432 234567777888888889999998
Q ss_pred HHHHHHHHc---CCCCCHh--hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004352 623 KLFYEMSEK---GCPPDNY--TYRIMIDSFCKTGGINSGYCLLLENID 665 (759)
Q Consensus 623 ~~~~~~~~~---~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~ 665 (759)
..++++... +-.|+.. ....-+..+...++|.+|-..|-++..
T Consensus 189 ~~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 189 EKLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhc
Confidence 888887543 2122211 112223345567888888888888776
No 261
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=85.94 E-value=3.3 Score=35.49 Aligned_cols=57 Identities=19% Similarity=0.130 Sum_probs=41.1
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 004352 615 KLNFYMAEKLFYEMSEKGCPPD-NYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPS 671 (759)
Q Consensus 615 ~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 671 (759)
.++..++..+|..|..+++--. +..|...+..+...|++++|..+|+..++.+-.|-
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 3446677777777777766555 56677777777788888888888888887766663
No 262
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=84.36 E-value=5.7 Score=31.21 Aligned_cols=60 Identities=12% Similarity=0.133 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHH
Q 004352 548 TEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMI 609 (759)
Q Consensus 548 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 609 (759)
-+..+-++.+...+.-|++.+....+.+|.+.+|+..|+++|+.+..+.+. ...+|..++
T Consensus 70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~--~~~iY~y~l 129 (152)
T 2y69_E 70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP--HKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT--CTTHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCC--chhhHHHHH
Confidence 345666677777778889999999999999999999999999998888433 344555544
No 263
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=84.27 E-value=27 Score=32.69 Aligned_cols=25 Identities=24% Similarity=0.175 Sum_probs=12.5
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHH
Q 004352 601 TTATYNIMINAFSEKLNFYMAEKLF 625 (759)
Q Consensus 601 ~~~~~~~l~~~~~~~g~~~~A~~~~ 625 (759)
++..+..++..|.+.|++.+|..+|
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 3444455555555555555554443
No 264
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=83.86 E-value=5.1 Score=29.64 Aligned_cols=63 Identities=14% Similarity=0.057 Sum_probs=46.4
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004352 617 NFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSLSTIGRVIN 680 (759)
Q Consensus 617 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 680 (759)
+.=+..+-++.+....+-|++.+....+.+|.+.+++..|+++++-...+ ..+....|..++.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence 34456666677776688899999999999999999999999999987643 2333444555543
No 265
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=83.20 E-value=49 Score=34.77 Aligned_cols=116 Identities=7% Similarity=-0.083 Sum_probs=71.5
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHH----HHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHH
Q 004352 475 LKMEIAIEILNTMWSHGVTPDVITYNSLLN----GLCKAAKSEDVMETFKTMIEKRCVPNIITYSILGESLCKAHKITEA 550 (759)
Q Consensus 475 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 550 (759)
.+.+.|...+........ .+......+-. .....+...++...+....... ++.......+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHH
Confidence 478899999988765332 23332222222 2223343556666666655432 2333333344444567999999
Q ss_pred HHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHH
Q 004352 551 FNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMED 594 (759)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 594 (759)
...|+.+... .........-+.+++...|+.++|..+|+.+..
T Consensus 305 ~~~~~~l~~~-~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHcccc-ccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 9999887653 122455556677788889999999999999874
No 266
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.07 E-value=16 Score=36.46 Aligned_cols=98 Identities=14% Similarity=-0.046 Sum_probs=46.7
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHH---
Q 004352 533 TYSILGESLCKAHKITEAFNLLEEMENK--GLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNI--- 607 (759)
Q Consensus 533 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~--- 607 (759)
+...++..|.+.|+++.|.+.+.++... +...-...+...++.+...+++..+...+.++.......++....+.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 3444555555555555555555555442 12222344555555555556666666665555443222222222111
Q ss_pred -HHHHHHhcCCHHHHHHHHHHHHH
Q 004352 608 -MINAFSEKLNFYMAEKLFYEMSE 630 (759)
Q Consensus 608 -l~~~~~~~g~~~~A~~~~~~~~~ 630 (759)
.+..+...+++.+|-+.|-++..
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 12222345666666666655543
No 267
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=78.04 E-value=4 Score=33.83 Aligned_cols=53 Identities=9% Similarity=0.117 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 004352 620 MAEKLFYEMSEKGCPPD-NYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSL 672 (759)
Q Consensus 620 ~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 672 (759)
++..+|+.|..+++--. +..|...+..+-..|++.+|..+|+..++.+-.|-.
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 35667777777766555 566677777777788888888888888877666743
No 268
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=76.07 E-value=25 Score=28.63 Aligned_cols=51 Identities=14% Similarity=0.156 Sum_probs=33.4
Q ss_pred HHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 004352 621 AEKLFYEMSEKGCPPD-NYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPS 671 (759)
Q Consensus 621 A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 671 (759)
+..+|+.|..+++--. +..|...+..+...|++++|..+|+..++++-.|-
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 5666666666655444 55566666666777777777777777777655663
No 269
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=75.28 E-value=23 Score=30.43 Aligned_cols=55 Identities=16% Similarity=0.204 Sum_probs=29.2
Q ss_pred ChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 004352 581 DLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPP 635 (759)
Q Consensus 581 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 635 (759)
...++..+|.-+...+.-......|...+..+...|++.+|.++|+.-++.+-.|
T Consensus 94 ~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 94 NFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp CHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3445555555555544333444555555555555566666666665555544444
No 270
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=74.86 E-value=15 Score=28.90 Aligned_cols=60 Identities=15% Similarity=0.038 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004352 620 MAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSLSTIGRVIN 680 (759)
Q Consensus 620 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 680 (759)
+..+-++.+...++-|++.+....+.+|.+.+|+..|+++++-...+ ..+....|..++.
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 34555666666688999999999999999999999999999988643 3344445655554
No 271
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=66.49 E-value=47 Score=27.03 Aligned_cols=53 Identities=9% Similarity=0.067 Sum_probs=35.7
Q ss_pred hhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 004352 583 DGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPP 635 (759)
Q Consensus 583 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 635 (759)
+++.++|.-+...+.-......|...+..+...|++.+|.++|+.-++.+-.|
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 44677777776665445556666777777777777777777777776665555
No 272
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=66.42 E-value=1e+02 Score=30.12 Aligned_cols=222 Identities=12% Similarity=-0.003 Sum_probs=107.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCChhcH----
Q 004352 466 TLIDGYCKQLKMEIAIEILNTMWSHGVTPD-----VITYNSLLNGLCKAAKSEDVMETFKTMIEK--RCVPNIITY---- 534 (759)
Q Consensus 466 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~---- 534 (759)
.++..|...|++.+|.+++.++.+.=-..| ...+..-+..|...++...+...+...... .+.+++...
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 567788888888888888877765311111 233445566777888888888888776543 122333222
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHHHHHC----CCCc--cHHHHHHHHHHHHccCChhhHHHHHH-HHHHccCCCCchhhHH
Q 004352 535 SILGESLC-KAHKITEAFNLLEEMENK----GLTL--DTVAFGTLINGFCNSGDLDGAYQLFR-RMEDQYKISHTTATYN 606 (759)
Q Consensus 535 ~~l~~~~~-~~~~~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~ 606 (759)
..-+..+. ..++|.+|...|-+..+. +.+. +...|..+ +-.-.++..+-..++. .....+ ..|....+.
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL--~aLl~~~r~el~~~l~~~~~~~~-~~pei~~l~ 260 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLL--CKIMLGQSDDVNQLVSGKLAITY-SGRDIDAMK 260 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--HHHHTTCGGGHHHHHHSHHHHTT-CSHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHH--HHHHcCCHHHHHHHhcccccccc-CCccHHHHH
Confidence 22233445 678888888777666532 1110 11122222 2222344333333332 111221 223344444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhc
Q 004352 607 IMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIP-SLSTIGRVINCLCVD 685 (759)
Q Consensus 607 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~ 685 (759)
.++.+| ..+++.+...+++.... .+..|+.....+-..+.. --...+.++.+ | ...++..+...+. .
T Consensus 261 ~L~~a~-~~~dl~~f~~iL~~~~~-~l~~D~~l~~h~~~L~~~-----Ir~~~L~~i~~----pYsrIsl~~iA~~l~-l 328 (394)
T 3txn_A 261 SVAEAS-HKRSLADFQAALKEYKK-ELAEDVIVQAHLGTLYDT-----MLEQNLCRIIE----PYSRVQVAHVAESIQ-L 328 (394)
T ss_dssp HHHHHH-HTTCHHHHHHHHHHSTT-TTTTSHHHHHHHHHHHHH-----HHHHHHHHHHT----TCSEEEHHHHHHHHT-C
T ss_pred HHHHHH-HhCCHHHHHHHHHHHHH-HHhcChHHHHHHHHHHHH-----HHHHHHHHHhH----hhceeeHHHHHHHHC-c
Confidence 455443 44566666665555432 244454322111110000 00112222222 3 3334444444442 2
Q ss_pred CcHHHHHHHHHHHHHCCC
Q 004352 686 HRVHEAVGFVHLMVQKGI 703 (759)
Q Consensus 686 g~~~~A~~~~~~~~~~~~ 703 (759)
..+++...+-+|...|.
T Consensus 329 -s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 329 -PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp -CHHHHHHHHHHHHHTTS
T ss_pred -CHHHHHHHHHHHHHCCC
Confidence 67888888888887554
No 273
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=64.14 E-value=6.2 Score=34.54 Aligned_cols=53 Identities=11% Similarity=0.040 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 004352 619 YMAEKLFYEMSEKGCPPD-NYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPS 671 (759)
Q Consensus 619 ~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 671 (759)
+++..+|..|..+++--. +..|...+..+...|++.+|..+|+..++++-.|-
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 466677777777766555 56677777777788888888888888887666663
No 274
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=64.10 E-value=39 Score=24.91 Aligned_cols=77 Identities=13% Similarity=0.044 Sum_probs=36.8
Q ss_pred ChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhCCChHHHHHHHH
Q 004352 231 NVRESEKLFNKVLKRGVSPNLFTFNMFIQGLCRKGAISEAISLLDSLGREDLTPDVVTYNTLMCGLCKNSKVVEAEYYLH 310 (759)
Q Consensus 231 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 310 (759)
..++|..+-+.+...+. ...+-.+-+..+...|++++|..+.+... .||...|-+|.. .+.|..+++...+.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 34555555555544432 11111222234455666666665554443 555555554433 24555555555555
Q ss_pred HHHHC
Q 004352 311 KMVNE 315 (759)
Q Consensus 311 ~~~~~ 315 (759)
++...
T Consensus 93 ~la~s 97 (115)
T 2uwj_G 93 GLGGS 97 (115)
T ss_dssp HHHTC
T ss_pred HHHhC
Confidence 55444
No 275
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=63.85 E-value=42 Score=24.81 Aligned_cols=49 Identities=18% Similarity=0.215 Sum_probs=22.8
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHH
Q 004352 260 GLCRKGAISEAISLLDSLGREDLTPDVVTYNTLMCGLCKNSKVVEAEYYLHKMVN 314 (759)
Q Consensus 260 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 314 (759)
.+...|++++|..+.+... .||...|-+|... +.|..+++...+.++..
T Consensus 49 SLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~--rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 49 SLMNRGDYASALQQGNKLA----YPDLEPWLALCEY--RLGLGSALESRLNRLAR 97 (116)
T ss_dssp HHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHHH--HHTCHHHHHHHHHHHTT
T ss_pred HHHcchhHHHHHHhcCCCC----CchHHHHHHHHHH--hcccHHHHHHHHHHHHh
Confidence 3445555555555544443 4555555444322 34444444444444433
No 276
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=62.67 E-value=54 Score=27.09 Aligned_cols=54 Identities=15% Similarity=0.209 Sum_probs=35.9
Q ss_pred hhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 004352 583 DGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPD 636 (759)
Q Consensus 583 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 636 (759)
+++..+|..+...+.-......|...+..+-..|++.+|.++|+.-++.+-.|-
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 346666777766654455566666777777777777777777777776655554
No 277
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=59.71 E-value=55 Score=33.18 Aligned_cols=78 Identities=13% Similarity=0.034 Sum_probs=46.9
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHH
Q 004352 533 TYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAF 612 (759)
Q Consensus 533 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 612 (759)
++..++........++.|...|..+... .|.+...|+.++-.....|+.-+|.-.|-+.... ..|.+.+..++...+
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~-~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~--~~Pf~~a~~nL~~~f 230 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQL-VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV--KFPFPAASTNLQKAL 230 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS--SBCCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHh-CCCCCchHHHHHHHHhcccccHHHHHHHHHHHhc--CCCChhHHHHHHHHH
Confidence 3444555555556667777777777665 4555566777666666666666666666555544 445555666555554
Q ss_pred H
Q 004352 613 S 613 (759)
Q Consensus 613 ~ 613 (759)
.
T Consensus 231 ~ 231 (497)
T 1ya0_A 231 S 231 (497)
T ss_dssp H
T ss_pred H
Confidence 4
No 278
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=56.60 E-value=89 Score=29.20 Aligned_cols=66 Identities=12% Similarity=0.041 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHcCCCCC--HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 004352 620 MAEKLFYEMSEKGCPPD--NYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSLSTIGRVINCLCVDHRVHEAVGFVHL 697 (759)
Q Consensus 620 ~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 697 (759)
...++.--+-...+.|. ..++..-+..+.+.+++..|..+.+++++ +.|+.. ..++|.+++..
T Consensus 188 R~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLe--l~p~~~-------------~a~qArkil~~ 252 (325)
T 3mv2_A 188 RMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLK--IISSGP-------------RAEQARKIKNK 252 (325)
T ss_dssp HHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCSSH-------------HHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCHH-------------HHHHHHHHHHH
Confidence 33444444444455665 45667777788999999999999999999 666422 33446666655
Q ss_pred HHH
Q 004352 698 MVQ 700 (759)
Q Consensus 698 ~~~ 700 (759)
--+
T Consensus 253 ce~ 255 (325)
T 3mv2_A 253 ADS 255 (325)
T ss_dssp HHT
T ss_pred Hhc
Confidence 544
No 279
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=56.36 E-value=1.5e+02 Score=29.39 Aligned_cols=51 Identities=18% Similarity=0.145 Sum_probs=25.4
Q ss_pred HhcCCChHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Q 004352 14 VKHQKNPLTALEMFNSVKREDGFKHTLLTYKYMIDKLGFHGNFEEMENLLLEMRM 68 (759)
Q Consensus 14 l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~ 68 (759)
.....+++.|+++-.+. - .+-....|..-...|...|++++|.++-.....
T Consensus 339 ~~~l~n~~lA~~lA~R~-~---LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~ 389 (494)
T 1bpo_A 339 TNVLQNPDLALRMAVRN-N---LAGAEELFARKFNALFAQGNYSEAAKVAANAPK 389 (494)
T ss_dssp HHTTCCHHHHHHHHHHT-T---CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG
T ss_pred hhccCCHHHHHHHHHhc-C---CccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc
Confidence 33445555555554442 1 222344455555555566666666555544433
No 280
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=53.11 E-value=66 Score=23.75 Aligned_cols=79 Identities=16% Similarity=0.154 Sum_probs=43.2
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHhhchhCCCCCCHHhHHHHHHHHHhcCChhHHHHHH
Q 004352 125 GYFSQVHKVYMRMRNKGIVPDVYTFVIRIKSFCRTRRPHVALRLLKNMPSQGFEPNAVAYCTLIAGFYEENHNVEAYELF 204 (759)
Q Consensus 125 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 204 (759)
...++|..+-+.+...+. ...+-.+.+..+...|+|++|..+.+... .||...|.++.. .+.|-.+++..-+
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL 91 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRL 91 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHH
Confidence 345666666666655432 22222233344566677777776665554 466666666644 3555555555555
Q ss_pred HHHHhCC
Q 004352 205 DEMLGMG 211 (759)
Q Consensus 205 ~~~~~~~ 211 (759)
.++...|
T Consensus 92 ~~la~sg 98 (115)
T 2uwj_G 92 AGLGGSS 98 (115)
T ss_dssp HHHHTCS
T ss_pred HHHHhCC
Confidence 5555443
No 281
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=51.50 E-value=71 Score=23.64 Aligned_cols=78 Identities=14% Similarity=0.157 Sum_probs=41.0
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHhhchhCCCCCCHHhHHHHHHHHHhcCChhHHHHHH
Q 004352 125 GYFSQVHKVYMRMRNKGIVPDVYTFVIRIKSFCRTRRPHVALRLLKNMPSQGFEPNAVAYCTLIAGFYEENHNVEAYELF 204 (759)
Q Consensus 125 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 204 (759)
...++|..+-+.+...+. ...+-.+.+..+...|+|++|..+.+... .||...|.++.. .+.|-.+++..-+
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL 92 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRL 92 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHH
Confidence 345666666665555432 22222223334556677777776666554 466666666644 3455555555545
Q ss_pred HHHHhC
Q 004352 205 DEMLGM 210 (759)
Q Consensus 205 ~~~~~~ 210 (759)
.++...
T Consensus 93 ~~la~s 98 (116)
T 2p58_C 93 NRLARS 98 (116)
T ss_dssp HHHTTC
T ss_pred HHHHhC
Confidence 455444
No 282
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=50.97 E-value=47 Score=28.59 Aligned_cols=52 Identities=12% Similarity=0.079 Sum_probs=25.5
Q ss_pred hHHHHHHHHHhhhcCCCCCCHH------HHHHHHHHHHhCCChHHHHHHHHHHHhcCC
Q 004352 20 PLTALEMFNSVKREDGFKHTLL------TYKYMIDKLGFHGNFEEMENLLLEMRMDVD 71 (759)
Q Consensus 20 ~~~A~~~~~~~~~~~~~~~~~~------~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~ 71 (759)
...|+.+++.+.+..+...... .-...+-+|.+.|.|++|.+++++.....+
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~ 145 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDP 145 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCG
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCC
Confidence 3556666666555432211110 111234445566666666666666655443
No 283
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=49.69 E-value=1.5e+02 Score=26.77 Aligned_cols=48 Identities=8% Similarity=0.007 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHHh---CCCCCCHHHHHHHHHHH----H-hcCcHHHHHHHHHHHHH
Q 004352 653 INSGYCLLLENID---KGFIPSLSTIGRVINCL----C-VDHRVHEAVGFVHLMVQ 700 (759)
Q Consensus 653 ~~~A~~~~~~~~~---~g~~p~~~~~~~l~~~~----~-~~g~~~~A~~~~~~~~~ 700 (759)
.+.|...|+.+.+ ..+.|..+....+.-++ + -.|+.++|..+.+++.+
T Consensus 151 ~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd 206 (260)
T 1o9d_A 151 AESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 206 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3566777777653 13788877776555444 2 47999999998888754
No 284
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=48.78 E-value=76 Score=27.80 Aligned_cols=53 Identities=17% Similarity=0.231 Sum_probs=30.6
Q ss_pred hhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 004352 583 DGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPP 635 (759)
Q Consensus 583 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 635 (759)
+++..+|..+...+.-......|...+..+...|++.+|.++|+.-++.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 45556666665554444445555566666666666666666666655554444
No 285
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=48.14 E-value=1.1e+02 Score=29.36 Aligned_cols=63 Identities=16% Similarity=0.211 Sum_probs=30.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCC
Q 004352 360 CSLINGLCQDGDVDRAMAVYVKALEKGLKPSIVLYNTLIKGLSQQGL--ILQALQLMNEMSESGCC 423 (759)
Q Consensus 360 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~ 423 (759)
..++.-|...|+.++|..+++++....+. ...+...+..++-+.++ .+....++..+...|+-
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~gll 285 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 285 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCC
Confidence 45566666677777777777666421111 12222333333333222 33455566666655443
No 286
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=43.96 E-value=1.8e+02 Score=26.17 Aligned_cols=22 Identities=18% Similarity=0.262 Sum_probs=10.0
Q ss_pred hCCChHHHHHHHHHHHHCCCCC
Q 004352 298 KNSKVVEAEYYLHKMVNEGLEP 319 (759)
Q Consensus 298 ~~~~~~~a~~~~~~~~~~~~~~ 319 (759)
..+......++++.+.+.|..+
T Consensus 191 ~~~~~~~~~~i~~~Ll~~g~~~ 212 (285)
T 1wdy_A 191 LSSDDSDVEAITHLLLDHGADV 212 (285)
T ss_dssp HCSCTTTHHHHHHHHHHTTCCS
T ss_pred HccccchHHHHHHHHHHcCCCC
Confidence 3444333444455555554443
No 287
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding protein; HET: MYR; NMR {Schizosaccharomyces pombe}
Probab=43.94 E-value=1.4e+02 Score=24.94 Aligned_cols=101 Identities=8% Similarity=0.055 Sum_probs=48.4
Q ss_pred CCCCHHHHHHHHhcCC-ChHHHHHHHHHhhhc-CCCCCCHHHHHHHHHHHHhCCCh-HHHHHHHHHHHhcCCCCccHHHH
Q 004352 3 RSVLPKHVAAVVKHQK-NPLTALEMFNSVKRE-DGFKHTLLTYKYMIDKLGFHGNF-EEMENLLLEMRMDVDDSLLEGVH 79 (759)
Q Consensus 3 ~~l~~~~~~~~l~~~~-~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~ 79 (759)
..+++..+..+....+ ...+..++|+..-.. .....+..-+..++..+...+.. .+...+|..+-.......+..-+
T Consensus 6 ~~l~~~el~~~~~~~~~~~~el~~~f~~~D~~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~f~~~D~d~~G~i~~~ef 85 (190)
T 2l2e_A 6 SKLSQDQLQDLVRSTRFDKKELQQWYKGFFKDCPSGHLNKSEFQKIYKQFFPFGDPSAFAEYVFNVFDADKNGYIDFKEF 85 (190)
T ss_dssp CCSCHHHHHHHHHHHCSCSHHHHHHHHHHHHHSCCCEECHHHHHHHHHHHCCCSCHHHHHHHHHHHHCSSSTTCEEHHHH
T ss_pred ccCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHhCCCCCccHHHHHHHHHhcCCCCCeEeHHHH
Confidence 6899999999887532 445555666654333 22345556566666555332222 23344454443333332233333
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhh
Q 004352 80 IGVMRNYGRRGKVQEAVDVFERMD 103 (759)
Q Consensus 80 ~~l~~~~~~~g~~~~A~~~~~~~~ 103 (759)
..++.........+....+|..+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~f~~~D 109 (190)
T 2l2e_A 86 ICALSVTSRGELNDKLIWAFQLYD 109 (190)
T ss_dssp HHHHTTSSCSCSHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCHHHHHHHHHhHcc
Confidence 322222222223344455555443
No 288
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=42.27 E-value=1.5e+02 Score=24.63 Aligned_cols=99 Identities=10% Similarity=-0.002 Sum_probs=38.6
Q ss_pred CCHHHHHHHHhcCC-ChHHHHHHHHHhhh-cCCCCCCHHHHHHHHHHHHhC-CChHHHHHHHHHHHhcCCCCccHHHHHH
Q 004352 5 VLPKHVAAVVKHQK-NPLTALEMFNSVKR-EDGFKHTLLTYKYMIDKLGFH-GNFEEMENLLLEMRMDVDDSLLEGVHIG 81 (759)
Q Consensus 5 l~~~~~~~~l~~~~-~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 81 (759)
+++..+..+....+ ...+..++|+.... ......+..-+..++..+... ....+...+|..+-..+....+-.-+..
T Consensus 1 l~~~el~~l~~~~~~s~~~i~~l~~~fd~~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~Ef~~ 80 (183)
T 1s6c_A 1 HRPEGLEQLEAQTNFTKRELQVLYRGFKNEXPSGVVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVKFEDFVT 80 (183)
T ss_dssp -----CHHHHHHSSCCHHHHHHHHHHHHHHCTTSEECHHHHHHHHHHHSTTSCCHHHHHHHHHHHCTTCSSCEEHHHHHH
T ss_pred CChHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHcCCCChHHHHHHHHHHhCCCCCCcEeHHHHHH
Confidence 45666666766443 23333333332222 112234455555555444322 2334445555554443333333333333
Q ss_pred HHHHHHhcCChhHHHHHHHHhh
Q 004352 82 VMRNYGRRGKVQEAVDVFERMD 103 (759)
Q Consensus 82 l~~~~~~~g~~~~A~~~~~~~~ 103 (759)
++.........+....+|..+-
T Consensus 81 ~~~~~~~~~~~~~~~~~f~~~D 102 (183)
T 1s6c_A 81 ALSILLRGTVHEKLRWTFNLYD 102 (183)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHC
T ss_pred HHHHHcCCCHHHHHHHHHHHhC
Confidence 3333333333334444454443
No 289
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=42.01 E-value=1.9e+02 Score=25.96 Aligned_cols=13 Identities=15% Similarity=0.271 Sum_probs=5.5
Q ss_pred HccCChhhHHHHH
Q 004352 157 CRTRRPHVALRLL 169 (759)
Q Consensus 157 ~~~~~~~~A~~~~ 169 (759)
++.|+.+....++
T Consensus 13 ~~~g~~~~v~~Ll 25 (285)
T 1wdy_A 13 VQNEDVDLVQQLL 25 (285)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHcCCHHHHHHHH
Confidence 3444444443333
No 290
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=41.76 E-value=2.9e+02 Score=27.97 Aligned_cols=66 Identities=14% Similarity=0.255 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCc---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004352 566 TVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHT---TATYNIMINAFSEKLNFYMAEKLFYEMSEK 631 (759)
Q Consensus 566 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 631 (759)
...++.+++.|...+.++.|..+..+..--....++ ...+..++..+.-.+++.+|.+.+..+..+
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 345777888888888888888888776411000111 222344567777888888888888887754
No 291
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=41.72 E-value=2.3e+02 Score=26.75 Aligned_cols=111 Identities=14% Similarity=0.068 Sum_probs=55.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHH----HHHHHHhCCCCCCHHHHHHHHH
Q 004352 359 YCSLINGLCQDGDVDRAMAVYVKALEKGLKPSIVLYNTLIKGLSQQGLILQALQ----LMNEMSESGCCPDMWTYNIVIN 434 (759)
Q Consensus 359 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~----~~~~~~~~~~~~~~~~~~~l~~ 434 (759)
+.++..-|.+.+++++|++++..-.. .+.+.|+...|.+ +++.+.+.+++++......++.
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~GA~---------------~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~ 102 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASVSQ---------------TLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLG 102 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 33455556666677766666543221 1233343333322 2233444455555555555555
Q ss_pred HHHhcCChH-HHHHHHHHHH----HCC--CCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 004352 435 GLCKMGCVS-DANNLVNDAI----SKG--YIPDIFTFNTLIDGYCKQLKMEIAIEIL 484 (759)
Q Consensus 435 ~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 484 (759)
.+.....-+ .=..+.+.++ +.| ..-|+.....+...|.+.+++.+|..-|
T Consensus 103 L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 103 CLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 554433211 1112222222 111 2346677777888888888888887766
No 292
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=40.29 E-value=1.7e+02 Score=26.74 Aligned_cols=18 Identities=22% Similarity=0.278 Sum_probs=7.8
Q ss_pred HHHHHhcCCHHHHHHHHH
Q 004352 363 INGLCQDGDVDRAMAVYV 380 (759)
Q Consensus 363 ~~~~~~~~~~~~A~~~~~ 380 (759)
+...+..|..+-+.-+++
T Consensus 165 L~~A~~~g~~~~v~~Ll~ 182 (285)
T 3kea_A 165 IHITIKNGHVDMMILLLD 182 (285)
T ss_dssp HHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcChHHHHHHHHH
Confidence 333444555544444433
No 293
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=39.60 E-value=1.9e+02 Score=29.22 Aligned_cols=78 Identities=12% Similarity=0.016 Sum_probs=41.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 004352 79 HIGVMRNYGRRGKVQEAVDVFERMDFYNCEPTVLSYNTIMNILVEYGYFSQVHKVYMRMRNKGIVPDVYTFVIRIKSFCR 158 (759)
Q Consensus 79 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 158 (759)
+..++....-...++.|..+|.++.... |.+...||.+.-.....|+.-+|.-.|-+..... .|-..+...+...+.+
T Consensus 155 l~~LGDL~RY~~~~~~A~~~Y~~A~~~~-P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~-~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 155 LVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHHHHHHHhC-CCCCchHHHHHHHHhcccccHHHHHHHHHHHhcC-CCChhHHHHHHHHHHH
Confidence 3344444444555666666666655443 3344456666665555665555555555554432 3455555555555543
No 294
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=39.24 E-value=1.6e+02 Score=24.34 Aligned_cols=98 Identities=14% Similarity=0.069 Sum_probs=52.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCC-CCchhhHHHHHHHHHhcCCH
Q 004352 540 SLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKI-SHTTATYNIMINAFSEKLNF 618 (759)
Q Consensus 540 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~ 618 (759)
.+--.|.+..+.-++.. .. +..+..--.-+|.+..++..|+..++.+.+.... .|+..+-
T Consensus 42 ~LyyngEY~R~Lf~L~~-----lN-T~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~------------- 102 (242)
T 3kae_A 42 VLYLNGEYTRALFHLHK-----LN-TCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDAR------------- 102 (242)
T ss_dssp HHHHTTCHHHHHHHHHT-----CC-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHH-------------
T ss_pred hhhhcchHhHHHHHHHh-----cc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccc-------------
Confidence 34456777766655432 12 2222122223677788888888888888743211 1111110
Q ss_pred HHHHHHHHHHHHcCCCC-C-HhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004352 619 YMAEKLFYEMSEKGCPP-D-NYTYRIMIDSFCKTGGINSGYCLLLENID 665 (759)
Q Consensus 619 ~~A~~~~~~~~~~~~~p-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 665 (759)
++.+ -+.| | ...++.++..|...|+.++|+.++.....
T Consensus 103 ------~~~f---fvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~ 142 (242)
T 3kae_A 103 ------IQEM---FVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFG 142 (242)
T ss_dssp ------HHTT---SCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------ccee---eeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcC
Confidence 0111 1222 3 34456666677788888888888777655
No 295
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=39.11 E-value=2.3e+02 Score=31.79 Aligned_cols=52 Identities=19% Similarity=0.131 Sum_probs=26.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHH
Q 004352 537 LGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRME 593 (759)
Q Consensus 537 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 593 (759)
+...|...|.++-+.++..- .+.++..-..++.+|...|++++|...|+++.
T Consensus 816 l~~~L~~~~~~~~a~eL~~~-----~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGG-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHhcHHHHHHHHHhh-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 44445555555544332211 23333333445566666666666666666554
No 296
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein, EF-hand, calcium ION, metal binding protein; HET: 1PE P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A
Probab=39.00 E-value=1.7e+02 Score=24.41 Aligned_cols=103 Identities=10% Similarity=0.082 Sum_probs=50.2
Q ss_pred CC---CCCCHHHHHHHHhcCC-ChHHHHHHHHHhhhc-CCCCCCHHHHHHHHHHHHhCCC-hHHHHHHHHHHHhcCCCCc
Q 004352 1 MG---RSVLPKHVAAVVKHQK-NPLTALEMFNSVKRE-DGFKHTLLTYKYMIDKLGFHGN-FEEMENLLLEMRMDVDDSL 74 (759)
Q Consensus 1 ~~---~~l~~~~~~~~l~~~~-~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~-~~~A~~~~~~~~~~~~~~~ 74 (759)
|| +.+++..+..+....+ ..++..++|+..-.. .....+..-+..++..+...+. ......+|..+-.......
T Consensus 1 MG~~~~~l~~~~l~~l~~~~~~~~~~i~~~f~~fd~~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~f~~~D~d~~g~i 80 (190)
T 1g8i_A 1 MGKSNSKLKPEVVEELTRKTYFTEKEVQQWYKGFIKDCPSGQLDAAGFQKIYKQFFPFGDPTKFATFVFNVFDENKDGRI 80 (190)
T ss_dssp ---CCCSCCHHHHHHHHHTSSSCHHHHHHHHHHHHHHCTTSEEEHHHHHHHHHHHCTTSCTHHHHHHHHHHHCTTCSSEE
T ss_pred CCcccccCCHHHHHHHHHccCCCHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCCCCeE
Confidence 66 5689999999987543 445555555543322 2223455555555555522232 2334444554433333323
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 004352 75 LEGVHIGVMRNYGRRGKVQEAVDVFERMD 103 (759)
Q Consensus 75 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 103 (759)
+..-+..++.........+....+|..+.
T Consensus 81 ~~~ef~~~~~~~~~~~~~~~~~~~f~~~D 109 (190)
T 1g8i_A 81 EFSEFIQALSVTSRGTLDEKLRWAFKLYD 109 (190)
T ss_dssp EHHHHHHHHHHHHHCCHHHHHHHHHHHHC
T ss_pred eHHHHHHHHHHhcCCCHHHHHHHHHHhhc
Confidence 33344444444433333445555565554
No 297
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=38.37 E-value=3.3e+02 Score=27.60 Aligned_cols=66 Identities=12% Similarity=0.160 Sum_probs=46.7
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCC-CCCH--HH-HHHHHHHHHHcCChhHHHHHHHHHHHC
Q 004352 75 LEGVHIGVMRNYGRRGKVQEAVDVFERMDFYNC-EPTV--LS-YNTIMNILVEYGYFSQVHKVYMRMRNK 140 (759)
Q Consensus 75 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~--~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~ 140 (759)
...+++.+++.|...+.++.|..+..+...... .+|. .. +..+++.+.-.+++.+|.+.+....+.
T Consensus 230 qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 230 KAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred hHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 456788889999999999999999988762110 1121 12 234577788888999998888887764
No 298
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=38.09 E-value=1.9e+02 Score=24.72 Aligned_cols=37 Identities=5% Similarity=0.062 Sum_probs=20.2
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcC
Q 004352 508 KAAKSEDVMETFKTMIEKRCVPNIITYSILGESLCKAH 545 (759)
Q Consensus 508 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 545 (759)
+-.+++.|+-++-+|++.| .|....-..++.+....|
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 3456666666666666666 444444444444444444
No 299
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=37.33 E-value=1.3e+02 Score=26.76 Aligned_cols=91 Identities=11% Similarity=0.116 Sum_probs=44.7
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhcC---CCCc--cHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 004352 45 YMIDKLGFHGNFEEMENLLLEMRMDV---DDSL--LEGVHIGVMRNYGRRGKVQEAVDVFERMDFYNCEPTVLSYNTIMN 119 (759)
Q Consensus 45 ~l~~~l~~~~~~~~A~~~~~~~~~~~---~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 119 (759)
--+.++...++|++|.+++++..... +... ........+..-.....-.-+..+.+.+.. ..+.......+.
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~ 99 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHH
Confidence 35667778899999999888665433 1100 011122222222222222223333333321 234444555556
Q ss_pred HHHHcCChhHHHHHHHHHH
Q 004352 120 ILVEYGYFSQVHKVYMRMR 138 (759)
Q Consensus 120 ~~~~~~~~~~a~~~~~~~~ 138 (759)
.+.+.|+.++|.++|-+..
T Consensus 100 ~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHHH
Confidence 6666666666666666554
No 300
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=37.14 E-value=2.9e+02 Score=27.50 Aligned_cols=112 Identities=13% Similarity=0.079 Sum_probs=67.8
Q ss_pred CCChHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 004352 53 HGNFEEMENLLLEMRMDVDDSLLEGVHIGVMRNYGRRGKVQEAVDVFERMDFYNCEPTVLSYNTIMNILVEYGYFSQVHK 132 (759)
Q Consensus 53 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 132 (759)
..+.+.|.++..+.-- |. .++.|......+..+|+|++|.++-...+. |.-.++.+.+.+-++=...|+....+.
T Consensus 342 l~n~~lA~~lA~R~~L--pG--Ad~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~ 416 (494)
T 1bpo_A 342 LQNPDLALRMAVRNNL--AG--AEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQ 416 (494)
T ss_dssp TCCHHHHHHHHHHTTC--SS--CHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHH
T ss_pred cCCHHHHHHHHHhcCC--cc--HHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHH
Confidence 4566666655443221 44 667788888889999999999988877652 334556665554443344566666777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHh
Q 004352 133 VYMRMRNKGIVPDVYTFVIRIKSFCRTRRPHVALRLLK 170 (759)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 170 (759)
+|.-+.+.| ..+..--.-+++.-...|+.+-..+++.
T Consensus 417 YF~~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekWl~ 453 (494)
T 1bpo_A 417 YFGILLDQG-QLNKYESLELCRPVLQQGRKQLLEKWLK 453 (494)
T ss_dssp HHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHhccC-ccchHHhhHHhHHHHhccHHHHHHHHHh
Confidence 777777665 3444333344555555555555555443
No 301
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=35.57 E-value=3.5e+02 Score=30.24 Aligned_cols=109 Identities=13% Similarity=0.080 Sum_probs=62.1
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhh---------------------h
Q 004352 46 MIDKLGFHGNFEEMENLLLEMRMDVDDSLLEGVHIGVMRNYGRRGKVQEAVDVFERMD---------------------F 104 (759)
Q Consensus 46 l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------------------~ 104 (759)
++..|...|.++.|.++. .--|. ++..-+.++++|...|++++|..+|+++. .
T Consensus 816 l~~~L~~~~~~~~a~eL~----~~~~~--t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLI----GWLNS--DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHG----GGCCS--SHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHH----hhcCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCc
Confidence 444555555555444322 22222 22233456666666666666666665432 0
Q ss_pred CCCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccC
Q 004352 105 YNCE-PTVLSYNTIMNILVEYGYFSQVHKVYMRMRNKGIVPDV----YTFVIRIKSFCRTR 160 (759)
Q Consensus 105 ~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~ 160 (759)
.... ....-|..++..+-+.+.++.+.++....++.--+.|. ..|..+.++.+..|
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 0001 12234778999999999999999999998875322233 35667777766544
No 302
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2ju0_A
Probab=34.06 E-value=2e+02 Score=23.88 Aligned_cols=50 Identities=6% Similarity=0.093 Sum_probs=27.4
Q ss_pred CC---CCCCHHHHHHHHhcCC-ChHHHHHHHHHhhhc-CCCCCCHHHHHHHHHHH
Q 004352 1 MG---RSVLPKHVAAVVKHQK-NPLTALEMFNSVKRE-DGFKHTLLTYKYMIDKL 50 (759)
Q Consensus 1 ~~---~~l~~~~~~~~l~~~~-~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~l 50 (759)
|| +++++..+..+....+ ..++..++|+..-.. .....+..-+..++..+
T Consensus 1 MG~~~~~l~~~~l~~l~~~~~~~~~~i~~~~~~fd~~~~~G~i~~~e~~~~l~~~ 55 (190)
T 1fpw_A 1 MGAKTSKLSKDDLTCLKQSTYFDRREIQQWHKGFLRDCPSGQLAREDFVKIYKQF 55 (190)
T ss_dssp CCCCSCCSTTHHHHHHTTTCCSTHHHHHHHHHHHHHHCTTCCEEHHHHHHHHHHH
T ss_pred CCcccCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCcCcHHHHHHHHHHH
Confidence 66 5688999998887533 344444444443222 12244555555555544
No 303
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=32.92 E-value=2.2e+02 Score=25.26 Aligned_cols=21 Identities=10% Similarity=-0.179 Sum_probs=13.3
Q ss_pred HHHHHhCCChHHHHHHHHHHH
Q 004352 293 MCGLCKNSKVVEAEYYLHKMV 313 (759)
Q Consensus 293 ~~~~~~~~~~~~a~~~~~~~~ 313 (759)
++.+....++++|..++++..
T Consensus 25 LDv~IA~r~feeAv~lle~~~ 45 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIE 45 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHH
Confidence 455666667777766666554
No 304
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=31.28 E-value=2.6e+02 Score=24.21 Aligned_cols=6 Identities=0% Similarity=0.169 Sum_probs=2.4
Q ss_pred HhcCCh
Q 004352 227 CKKGNV 232 (759)
Q Consensus 227 ~~~g~~ 232 (759)
+..|+.
T Consensus 50 ~~~~~~ 55 (240)
T 3eu9_A 50 AINNRI 55 (240)
T ss_dssp HHTTCH
T ss_pred HHhCCH
Confidence 333443
No 305
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=31.18 E-value=41 Score=21.99 Aligned_cols=33 Identities=24% Similarity=0.302 Sum_probs=22.1
Q ss_pred hhHHHHHHHHHHhCCCCCChhhHHHHHHHH-Hhc
Q 004352 197 NVEAYELFDEMLGMGISPDIATFNKLIHTL-CKK 229 (759)
Q Consensus 197 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~ 229 (759)
.++|.+.|.+|++..-.++..||...+..+ ++.
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i~i~D 35 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISELGTRD 35 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCC
Confidence 357777788777655444667788777777 443
No 306
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=30.94 E-value=1.8e+02 Score=23.98 Aligned_cols=54 Identities=7% Similarity=-0.031 Sum_probs=34.7
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCC--CHhhHHHHHH------HHHhcCChHHHHHHHHHHHh
Q 004352 612 FSEKLNFYMAEKLFYEMSEKGCPP--DNYTYRIMID------SFCKTGGINSGYCLLLENID 665 (759)
Q Consensus 612 ~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~------~~~~~g~~~~A~~~~~~~~~ 665 (759)
+...|++=+|-++++.+-...-.+ +...|..|+. ...+.|+...|..++.+++.
T Consensus 42 lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 42 LYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 334477777777777766543334 3444555554 23457999999999998876
No 307
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=30.79 E-value=2.5e+02 Score=23.98 Aligned_cols=29 Identities=14% Similarity=0.167 Sum_probs=16.5
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004352 404 QGLILQALQLMNEMSESGCCPDMWTYNIVI 433 (759)
Q Consensus 404 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 433 (759)
..+.+.|+-.+.+|++.| .|....-..++
T Consensus 27 GSDpDAAly~LaRml~~G-Dp~~IaRRLvi 55 (204)
T 2r9g_A 27 GSDVDAALHYLARLVEAG-DLASICRRLMV 55 (204)
T ss_dssp TTCHHHHHHHHHHHHHHT-CHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcC-CHHHHHHHHHH
Confidence 356677777777777766 44333333333
No 308
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=30.43 E-value=5.1e+02 Score=27.36 Aligned_cols=43 Identities=21% Similarity=0.119 Sum_probs=24.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHh
Q 004352 255 NMFIQGLCRKGAISEAISLLDSLGREDLTPDVVTYNTLMCGLCK 298 (759)
Q Consensus 255 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 298 (759)
-.++-.+.++|++++|.++.++....- ..-...+...+..|+.
T Consensus 156 Wa~IyY~LR~G~~~~A~e~~~~~~~~~-~~~d~~F~~~l~~~~~ 198 (661)
T 2qx5_A 156 WALIFYLLRAGLIKEALQVLVENKANI-KKVEQSFLTYFKAYAS 198 (661)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHTGGGC------CHHHHHHHC--
T ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhhH-hhhhHHHHHHHHHHHh
Confidence 356777889999999998887765321 1111345555555543
No 309
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=30.32 E-value=2.2e+02 Score=23.93 Aligned_cols=12 Identities=8% Similarity=-0.025 Sum_probs=4.8
Q ss_pred HHcCChhHHHHH
Q 004352 332 CKAGMISSADKI 343 (759)
Q Consensus 332 ~~~~~~~~a~~~ 343 (759)
+..|+.+-+..+
T Consensus 80 ~~~~~~~~~~~L 91 (201)
T 3hra_A 80 GAQGRTEILAYM 91 (201)
T ss_dssp HHTTCHHHHHHH
T ss_pred HHcCCHHHHHHH
Confidence 334444433333
No 310
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=30.10 E-value=2.6e+02 Score=25.49 Aligned_cols=20 Identities=20% Similarity=0.117 Sum_probs=9.6
Q ss_pred HHHHHHHcCChhHHHHHHHH
Q 004352 327 VIDGYCKAGMISSADKILND 346 (759)
Q Consensus 327 ll~~~~~~~~~~~a~~~~~~ 346 (759)
.+...+..|..+-+.-+++.
T Consensus 164 ~L~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 164 CIHITIKNGHVDMMILLLDY 183 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcChHHHHHHHHHc
Confidence 33344455555555444443
No 311
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=29.38 E-value=1.8e+02 Score=25.11 Aligned_cols=22 Identities=9% Similarity=0.083 Sum_probs=13.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHh
Q 004352 644 IDSFCKTGGINSGYCLLLENID 665 (759)
Q Consensus 644 ~~~~~~~g~~~~A~~~~~~~~~ 665 (759)
+..|.+.|.+++|.+++++...
T Consensus 121 V~VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 121 VIICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHHhcchHHHHHHHHHHhc
Confidence 3456666666666666666655
No 312
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=29.14 E-value=1.6e+02 Score=21.26 Aligned_cols=26 Identities=8% Similarity=0.038 Sum_probs=11.1
Q ss_pred CCHHHHHHHHhcCCChHHHHHHHHHh
Q 004352 5 VLPKHVAAVVKHQKNPLTALEMFNSV 30 (759)
Q Consensus 5 l~~~~~~~~l~~~~~~~~A~~~~~~~ 30 (759)
+|..+...+.......+.|..+++.+
T Consensus 37 lt~~~~e~I~~~~t~~~kar~Lld~l 62 (94)
T 2p1h_A 37 LTISEEEKVRNEPTQQQRAAMLIKMI 62 (94)
T ss_dssp SCHHHHHHHHTSSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHcCCChHHHHHHHHHHH
Confidence 33344444443344444444444443
No 313
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=28.89 E-value=92 Score=25.71 Aligned_cols=70 Identities=16% Similarity=0.113 Sum_probs=40.7
Q ss_pred hHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhc--CCCCccHHHHHHHHHHHHhcCC
Q 004352 20 PLTALEMFNSVKREDGFKHTLLTYKYMIDKLGFHGNFEEMENLLLEMRMD--VDDSLLEGVHIGVMRNYGRRGK 91 (759)
Q Consensus 20 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~ 91 (759)
.+.+++.+...++..|.+.++. ...++..+...++.-.|.++++.+.+. +|. .+....+.-+..+...|-
T Consensus 13 ~~~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~-is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 13 YDVLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLN-VGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGC-CCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCC-CCHHHHHHHHHHHHHCCC
Confidence 4566666666666667766554 355666666666677777777777665 433 133333333444444443
No 314
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=28.38 E-value=2.8e+02 Score=23.67 Aligned_cols=35 Identities=6% Similarity=0.105 Sum_probs=17.4
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHh
Q 004352 509 AAKSEDVMETFKTMIEKRCVPNIITYSILGESLCK 543 (759)
Q Consensus 509 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 543 (759)
-.+++.|+-++-+|++.|..|....-..++.+...
T Consensus 20 GSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsED 54 (201)
T 3bge_A 20 GSAPDAALYWYARILTAGGDPLYVARRLLAIASED 54 (201)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhh
Confidence 34566666666666665544443333334444333
No 315
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=28.33 E-value=1.3e+02 Score=22.10 Aligned_cols=50 Identities=10% Similarity=0.053 Sum_probs=22.7
Q ss_pred CCHHHHHHHHhc-C-CChHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCChHHH
Q 004352 5 VLPKHVAAVVKH-Q-KNPLTALEMFNSVKREDGFKHTLLTYKYMIDKLGFHGNFEEM 59 (759)
Q Consensus 5 l~~~~~~~~l~~-~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~A 59 (759)
||......+... + .+.+.|.++++.+.+. .+.+|..++.+|...|....|
T Consensus 36 lt~~~~e~I~~~~~~t~~~~ar~Lld~L~~r-----G~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 36 FRPHMIEDIQRAGSGSRRDQARQLIIDLETR-----GSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp SCHHHHHHHHTSTTCCHHHHHHHHHHHHTTS-----CTTHHHHHHHHHHTTTCHHHH
T ss_pred CCHHHHHHHHhccCCChHHHHHHHHHHHHHc-----ChHHHHHHHHHHHHcCcHHHH
Confidence 344444444443 2 3455555555554332 234455555555444443333
No 316
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=28.11 E-value=2.1e+02 Score=24.82 Aligned_cols=15 Identities=7% Similarity=0.002 Sum_probs=6.3
Q ss_pred HHccCChhhHHHHHh
Q 004352 156 FCRTRRPHVALRLLK 170 (759)
Q Consensus 156 ~~~~~~~~~A~~~~~ 170 (759)
.+..|+.+-+..+++
T Consensus 49 A~~~~~~~~v~~Ll~ 63 (240)
T 3eu9_A 49 AAINNRIDLVKYYIS 63 (240)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHH
Confidence 334444444443333
No 317
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=27.73 E-value=1.2e+02 Score=27.18 Aligned_cols=19 Identities=21% Similarity=0.296 Sum_probs=8.8
Q ss_pred hcCChhHHHHHHHHHhhCC
Q 004352 228 KKGNVRESEKLFNKVLKRG 246 (759)
Q Consensus 228 ~~g~~~~a~~~~~~~~~~~ 246 (759)
+.|+.+....+++.+.+.|
T Consensus 14 ~~g~~~~v~~ll~~l~~~~ 32 (260)
T 3jxi_A 14 SRGSPDGLEGLLSFLLTHK 32 (260)
T ss_dssp HHTCGGGGTTHHHHHHHHT
T ss_pred HhCCHHHHHHHHHHHHhcC
Confidence 4455555444444444433
No 318
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus}
Probab=27.64 E-value=3.2e+02 Score=24.37 Aligned_cols=167 Identities=13% Similarity=0.091 Sum_probs=87.4
Q ss_pred CCCHHHHHHHHhcCC-ChHHHHHHHHHhhhc-CCCCCCHHHHHHHHHHHHhCC-ChHHHHHHHHHHHhcCCCCccHHHHH
Q 004352 4 SVLPKHVAAVVKHQK-NPLTALEMFNSVKRE-DGFKHTLLTYKYMIDKLGFHG-NFEEMENLLLEMRMDVDDSLLEGVHI 80 (759)
Q Consensus 4 ~l~~~~~~~~l~~~~-~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~ 80 (759)
.+++..+..+....+ ..++...+|+..... .....+..-+..++..+...+ ....+..+|..+-..+....+-.-+.
T Consensus 73 ~l~~e~l~~l~~~~~~s~~ei~~l~~~fd~~~~~G~I~~~ef~~~l~~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~ 152 (256)
T 2jul_A 73 RHQPEGLDQLQAQTKFTKKELQSLYRGFKNECPTGLVDEDTFKLIYSQFFPQGDATTYAHFLFNAFDADGNGAIHFEDFV 152 (256)
T ss_dssp ---CTHHHHHHHHTTSCHHHHHHHHHHHHHHCTTSSEEHHHHHHHHHHHCCSSCCHHHHHHHHHHSSCSCCSEECSHHHH
T ss_pred cCCHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCCcCCHHHHHHHHHHHcccCCcHHHHHHHHHHhccCCCCcCcHHHHH
Confidence 466777877776443 334444445443332 222455566666665554322 23456667776654444434444455
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhhCC-CCCCHHHHHHHHHHHHH-cC-----------ChhHHHHHHHHHHHCCCCCCHH
Q 004352 81 GVMRNYGRRGKVQEAVDVFERMDFYN-CEPTVLSYNTIMNILVE-YG-----------YFSQVHKVYMRMRNKGIVPDVY 147 (759)
Q Consensus 81 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~-~~-----------~~~~a~~~~~~~~~~~~~~~~~ 147 (759)
.++.........+....+|..+...+ ..-+..-+..++..+.. .| .-+.+..+|..+-..+ ....
T Consensus 153 ~~l~~~~~~~~~~~l~~~F~~~D~d~dG~I~~~Ef~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~D~d~--dG~I 230 (256)
T 2jul_A 153 VGLSILLRGTVHEKLKWAFNLYDINKDGCITKEEMLAIMKSIYDMMGRHTYPILREDAPLEHVERFFQKMDRNQ--DGVV 230 (256)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHTCCSSSSCBCHHHHHHHHHHHHHHCCCCCSCCSCCCCHHHHHHHHHHHSCCST--TCSB
T ss_pred HHHHHHhccChHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHhCCCCCcccchhhHHHHHHHHHHHHCCCC--CCcE
Confidence 55555554445566777787765322 13455555555544322 13 2244566666653332 2234
Q ss_pred HHHHHHHHHHccCChhhHHHHHhhc
Q 004352 148 TFVIRIKSFCRTRRPHVALRLLKNM 172 (759)
Q Consensus 148 ~~~~l~~~~~~~~~~~~A~~~~~~~ 172 (759)
++.-+...+.+....-++...|+.+
T Consensus 231 s~~Ef~~~~~~~~~l~~~l~~~d~~ 255 (256)
T 2jul_A 231 TIDEFLETCQKDENIMNSMQLFENV 255 (256)
T ss_dssp CHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred eHHHHHHHHHhCHHHHHHHHhhccc
Confidence 5666677777777777777777654
No 319
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=27.38 E-value=4.7e+02 Score=25.97 Aligned_cols=38 Identities=8% Similarity=0.086 Sum_probs=24.7
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcC
Q 004352 508 KAAKSEDVMETFKTMIEKRCVPNIITYSILGESLCKAH 545 (759)
Q Consensus 508 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 545 (759)
+..+.+.|+.++.+|++.|..|....-..+..+...-|
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig 304 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVG 304 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccc
Confidence 45688888888889988876655444444444444433
No 320
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=27.25 E-value=2.9e+02 Score=23.49 Aligned_cols=59 Identities=14% Similarity=0.026 Sum_probs=23.5
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHh
Q 004352 180 NAVAYCTLIAGFYEENHNVEAYELFDEMLGMGISPDIATFNKLIHTLCKKGNVRESEKLFNKVL 243 (759)
Q Consensus 180 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 243 (759)
+..+-...+.++...++. ++...+..+.+ .++...-...+.++.+.+. +.+...+..+.
T Consensus 125 ~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l 183 (211)
T 3ltm_A 125 DWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGEIGG-ERVRAAMEKLA 183 (211)
T ss_dssp SHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-hhHHHHHHHHH
Confidence 344444444444444432 23333333332 2344444444444444444 23333333333
No 321
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=27.04 E-value=2.8e+02 Score=23.21 Aligned_cols=15 Identities=13% Similarity=0.293 Sum_probs=8.0
Q ss_pred HccCChhhHHHHHhh
Q 004352 157 CRTRRPHVALRLLKN 171 (759)
Q Consensus 157 ~~~~~~~~A~~~~~~ 171 (759)
+..|+.+....++..
T Consensus 13 ~~~g~~~~v~~ll~~ 27 (201)
T 3hra_A 13 ANQRDTKKVKEILQD 27 (201)
T ss_dssp HHTTCHHHHHHHHTC
T ss_pred HHhccHHHHHHHHHc
Confidence 445555555555543
No 322
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=26.79 E-value=1.4e+02 Score=24.21 Aligned_cols=57 Identities=12% Similarity=0.045 Sum_probs=0.0
Q ss_pred HHHHHHHCCCCCc-hHHHHHhc--ccc-ccccchHHHHHHHhcCCC--chHHHHHHHhhhhhh
Q 004352 694 FVHLMVQKGIVPE-VVNTIFEA--DKR-EVASPKIVVEDLLKKSHI--TYYAYELLFDGIRDK 750 (759)
Q Consensus 694 ~~~~~~~~~~~p~-~~~~~~~~--~~~-~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 750 (759)
..+.+.+.|+++. .-..++.. ..+ .+-.|.++++.+.+.++. +.|+|..|....+.|
T Consensus 4 ~~~~l~~~g~r~T~qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 4 NNQALKDAGLKVTLPRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
No 323
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=26.16 E-value=3.2e+02 Score=23.61 Aligned_cols=56 Identities=14% Similarity=0.144 Sum_probs=27.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCC-----HHHHHHHHHHHHHCCCCc
Q 004352 509 AAKSEDVMETFKTMIEKRCVPNIITYSILGESLCKAHK-----ITEAFNLLEEMENKGLTL 564 (759)
Q Consensus 509 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~ 564 (759)
-.+++.|+-++-+|++.|..|....-..++.+....|. ...|...++.....|.|-
T Consensus 48 GSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE 108 (213)
T 3ctd_A 48 GSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFPE 108 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTTT
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCH
Confidence 34566666666666666544444444444444444332 223344444444445443
No 324
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=26.04 E-value=89 Score=28.07 Aligned_cols=20 Identities=10% Similarity=-0.059 Sum_probs=9.7
Q ss_pred HhcCChhHHHHHHHHHHhCC
Q 004352 192 YEENHNVEAYELFDEMLGMG 211 (759)
Q Consensus 192 ~~~~~~~~a~~~~~~~~~~~ 211 (759)
++.|+.+....+++.+.+.+
T Consensus 13 ~~~g~~~~v~~ll~~l~~~~ 32 (260)
T 3jxi_A 13 VSRGSPDGLEGLLSFLLTHK 32 (260)
T ss_dssp HHHTCGGGGTTHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHhcC
Confidence 34555555555555444433
No 325
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=25.10 E-value=1.6e+02 Score=23.32 Aligned_cols=55 Identities=13% Similarity=0.040 Sum_probs=0.0
Q ss_pred HHHHHCCCCCc-hHHHHHhc--ccc-ccccchHHHHHHHhc--CCCchHHHHHHHhhhhhh
Q 004352 696 HLMVQKGIVPE-VVNTIFEA--DKR-EVASPKIVVEDLLKK--SHITYYAYELLFDGIRDK 750 (759)
Q Consensus 696 ~~~~~~~~~p~-~~~~~~~~--~~~-~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 750 (759)
+.+.+.|++++ .-..++.. ..+ .+-.|.++++.+.+. +..+.|++..|....+.|
T Consensus 7 ~~l~~~g~r~T~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 7 SELRKAGLKVTLPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
No 326
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=24.35 E-value=1.1e+02 Score=24.71 Aligned_cols=57 Identities=16% Similarity=0.061 Sum_probs=0.0
Q ss_pred HHHHHHHHCCCCCc-hHHHHHhc--cccccccchHHHHHHHhcCCC--chHHHHHHHhhhhhh
Q 004352 693 GFVHLMVQKGIVPE-VVNTIFEA--DKREVASPKIVVEDLLKKSHI--TYYAYELLFDGIRDK 750 (759)
Q Consensus 693 ~~~~~~~~~~~~p~-~~~~~~~~--~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 750 (759)
.+.+.+.++|+++. .-..++.. ..+ +-.|..+++.+.+.++. +.|+|..|....+.|
T Consensus 5 ~~~~~L~~~g~r~T~qR~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 5 DWKSDLRQRGYRLTPQRQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp THHHHHHTTTCCCCHHHHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCcCHHHHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
No 327
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=24.16 E-value=1e+02 Score=26.20 Aligned_cols=23 Identities=26% Similarity=0.239 Sum_probs=9.9
Q ss_pred HHHHhCCChHHHHHHHHHHHhcC
Q 004352 48 DKLGFHGNFEEMENLLLEMRMDV 70 (759)
Q Consensus 48 ~~l~~~~~~~~A~~~~~~~~~~~ 70 (759)
-+|.+.|.+++|.++|++.....
T Consensus 125 ~VCiekg~Fk~A~eiLkr~f~~~ 147 (211)
T 3bqo_A 125 AVCMENGNFKEAEEVFERIFGDP 147 (211)
T ss_dssp HHHHHTTCHHHHHHHHHHHC---
T ss_pred HHHHHccchHHHHHHHHHHhcCC
Confidence 34445555555555555544333
No 328
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=23.77 E-value=3.5e+02 Score=23.32 Aligned_cols=33 Identities=18% Similarity=0.174 Sum_probs=19.2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004352 404 QGLILQALQLMNEMSESGCCPDMWTYNIVINGL 436 (759)
Q Consensus 404 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 436 (759)
..+.+.|+-.+-+|++.|-.|....-..++-+.
T Consensus 48 GSDpDAALywLaRMl~~GEDp~~IaRRLvi~As 80 (213)
T 3ctd_A 48 GSDPDATLYWLANMVEAGEDPNFIFRRLLISAC 80 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 466777777777777776554444333333333
No 329
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=23.06 E-value=2.7e+02 Score=21.73 Aligned_cols=65 Identities=12% Similarity=0.103 Sum_probs=33.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC--hhHHHHHHHHHhhCCCC
Q 004352 183 AYCTLIAGFYEENHNVEAYELFDEMLGMGISPDIATFNKLIHTLCKKGN--VRESEKLFNKVLKRGVS 248 (759)
Q Consensus 183 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~ 248 (759)
....++.-|...|+.++|...++++.... .........+..++-+.++ .+.+..++..+.+.|+-
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~-f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCc-cHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 34566777777778888877777764210 0011222333333333322 34556666666655544
No 330
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=22.60 E-value=2.1e+02 Score=23.23 Aligned_cols=65 Identities=12% Similarity=0.103 Sum_probs=33.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC--hhHHHHHHHHHhhCCCC
Q 004352 183 AYCTLIAGFYEENHNVEAYELFDEMLGMGISPDIATFNKLIHTLCKKGN--VRESEKLFNKVLKRGVS 248 (759)
Q Consensus 183 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~ 248 (759)
....++.-|...++.++|...++++.... .........+..++-+.++ .+.+..++..+...++-
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~-f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCc-chHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 34566777777777777777777764210 0011222233333333222 34455666666555443
No 331
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=22.58 E-value=2.5e+02 Score=22.79 Aligned_cols=63 Identities=16% Similarity=0.254 Sum_probs=33.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHHCCC
Q 004352 79 HIGVMRNYGRRGKVQEAVDVFERMDFYNCEPTVLSYNTIMNILVEYGY--FSQVHKVYMRMRNKGI 142 (759)
Q Consensus 79 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~ 142 (759)
...++.-|...|+.++|..+++.+.... .........+..++-+.+. .+.+..++..+...++
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~-f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~ 76 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 76 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCc-chHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 3456677777777777777777765211 1122233334444443222 3345666666665553
No 332
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=22.58 E-value=2e+02 Score=19.98 Aligned_cols=55 Identities=13% Similarity=0.043 Sum_probs=34.2
Q ss_pred HHHHHCCCCCc-hHHHHHhc--ccc-ccccchHHHHHHHhcC--CCchHHHHHHHhhhhhh
Q 004352 696 HLMVQKGIVPE-VVNTIFEA--DKR-EVASPKIVVEDLLKKS--HITYYAYELLFDGIRDK 750 (759)
Q Consensus 696 ~~~~~~~~~p~-~~~~~~~~--~~~-~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 750 (759)
+.+.+.|+... ....++.. ..+ ..-.+.++++.+.+.+ ..+.|++..|....+.|
T Consensus 6 ~~l~~~g~~~t~~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 6 TALKKAGLKVTLPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCcCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 34556676666 33334444 333 5677888888888764 45667777776665554
No 333
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=21.99 E-value=3e+02 Score=21.91 Aligned_cols=40 Identities=10% Similarity=0.098 Sum_probs=20.2
Q ss_pred hhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCC
Q 004352 31 KREDGFKHTLLTYKYMIDKLGFHGNFEEMENLLLEMRMDVD 71 (759)
Q Consensus 31 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~ 71 (759)
++..|.+.++.- ..++..+...+..-.|.++++.+.+..|
T Consensus 13 l~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~~~ 52 (145)
T 2fe3_A 13 LKETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGKFP 52 (145)
T ss_dssp HHHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGGCT
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCC
Confidence 344455554442 3444455444555556666666555543
No 334
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.83 E-value=5.5e+02 Score=24.86 Aligned_cols=58 Identities=17% Similarity=0.175 Sum_probs=40.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC----------------CccHHHHHHHHHHHHccCChhhHHHHHHHHHH
Q 004352 537 LGESLCKAHKITEAFNLLEEMENKGL----------------TLDTVAFGTLINGFCNSGDLDGAYQLFRRMED 594 (759)
Q Consensus 537 l~~~~~~~~~~~~a~~~~~~~~~~~~----------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 594 (759)
++.++....+.+++.++++.+...-. .........++..|...|+.++|..+++++..
T Consensus 82 ~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~ 155 (393)
T 4b4t_O 82 LLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEK 155 (393)
T ss_dssp THHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 45566677888999999988875310 11233445667778888899999888888764
No 335
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=21.73 E-value=3.9e+02 Score=23.06 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=10.6
Q ss_pred HHHhcCChhHHHHHHHHHhhCC
Q 004352 225 TLCKKGNVRESEKLFNKVLKRG 246 (759)
Q Consensus 225 ~~~~~g~~~~a~~~~~~~~~~~ 246 (759)
..+..|+.+.+..+++.+.+.|
T Consensus 15 ~A~~~g~~~~v~~Ll~~~~~~~ 36 (241)
T 1k1a_A 15 IAVVQGNLPAVHRLVNLFQQGG 36 (241)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHhcC
Confidence 3344455555555555444433
No 336
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=21.72 E-value=3.9e+02 Score=23.06 Aligned_cols=21 Identities=10% Similarity=-0.043 Sum_probs=10.3
Q ss_pred HHhcCChhHHHHHHHHHHhCC
Q 004352 191 FYEENHNVEAYELFDEMLGMG 211 (759)
Q Consensus 191 ~~~~~~~~~a~~~~~~~~~~~ 211 (759)
.+..|+.+-...+++.+.+.+
T Consensus 16 A~~~g~~~~v~~Ll~~~~~~~ 36 (241)
T 1k1a_A 16 AVVQGNLPAVHRLVNLFQQGG 36 (241)
T ss_dssp HHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHhcC
Confidence 344555555555555444444
No 337
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=20.98 E-value=3.8e+02 Score=22.67 Aligned_cols=141 Identities=12% Similarity=0.058 Sum_probs=62.9
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHhhchhCCCCCCHHhHHHHHH
Q 004352 110 TVLSYNTIMNILVEYGYFSQVHKVYMRMRNKGIVPDVYTFVIRIKSFCRTRRPHVALRLLKNMPSQGFEPNAVAYCTLIA 189 (759)
Q Consensus 110 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 189 (759)
+...-...+..+.+.+. ..+...+.++.. .++.......+.++...+..+....+... .. .++..+-...+.
T Consensus 32 ~~~vR~~A~~~L~~~~~-~~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~~~~~L~~~-l~---~~~~~vr~~a~~ 103 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGD-ERAVEPLIKALK---DEDAWVRRAAADALGQIGDERAVEPLIKA-LK---DEDGWVRQSAAV 103 (211)
T ss_dssp SHHHHHHHHHHHHHHCC-GGGHHHHHHHTT---CSCHHHHHHHHHHHHHHCCGGGHHHHHHH-TT---CSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCC-ccHHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHHHHHHHHH-Hc---CCCHHHHHHHHH
Confidence 33333334444444443 223333333333 13444444445555555543332222222 22 234555555555
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 004352 190 GFYEENHNVEAYELFDEMLGMGISPDIATFNKLIHTLCKKGNVRESEKLFNKVLKRGVSPNLFTFNMFIQGLCRKGA 266 (759)
Q Consensus 190 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 266 (759)
++.+.++. ++...+..+.. .++...-...+.++...|+.+ +...+..+.+ .++..+-...+.++.+.+.
T Consensus 104 aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 104 ALGQIGDE-RAVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG 172 (211)
T ss_dssp HHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS
T ss_pred HHHHhCcH-HHHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc
Confidence 55555553 23344444443 345555555556666665543 3333333332 2355555555555555554
No 338
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=20.95 E-value=3.3e+02 Score=21.90 Aligned_cols=60 Identities=10% Similarity=0.193 Sum_probs=34.5
Q ss_pred HHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH
Q 004352 207 MLGMGISPDIATFNKLIHTLCKKGNVRESEKLFNKVLKRGVSPNLFTFNMFIQGLCRKGAI 267 (759)
Q Consensus 207 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 267 (759)
+.+.|..++. .-..++..+...+..-.|.++++.+.+.+...+..|....+..+...|-+
T Consensus 18 l~~~g~r~T~-qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 18 IKKNGLKNSK-QREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHCC--CHH-HHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 4455555333 23344555556666777788887777666555666655556666665543
No 339
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=20.35 E-value=3.1e+02 Score=21.39 Aligned_cols=63 Identities=16% Similarity=0.254 Sum_probs=33.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHHCCC
Q 004352 79 HIGVMRNYGRRGKVQEAVDVFERMDFYNCEPTVLSYNTIMNILVEYGY--FSQVHKVYMRMRNKGI 142 (759)
Q Consensus 79 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~ 142 (759)
...++.-|...|+.++|..+++.+.... .........+..++-+.+. .+.+..++..+...|+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~-f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~ 74 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 74 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCc-cHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 3456677777777777777777765211 1122233334444443321 2445666666666554
No 340
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=20.34 E-value=1.1e+02 Score=18.70 Aligned_cols=27 Identities=26% Similarity=0.270 Sum_probs=15.0
Q ss_pred CCCCCCHHHHHHHHhcCCChHHHHHHH
Q 004352 1 MGRSVLPKHVAAVVKHQKNPLTALEMF 27 (759)
Q Consensus 1 ~~~~l~~~~~~~~l~~~~~~~~A~~~~ 27 (759)
||..-....+..+....|+++.|++.+
T Consensus 17 MGF~d~~~~~~AL~~~~gnv~~Ave~L 43 (46)
T 2bwb_A 17 MGFFDFDRNVAALRRSGGSVQGALDSL 43 (46)
T ss_dssp TTCCCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHhCCCHHHHHHHH
Confidence 554323334555555667777777654
No 341
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=20.31 E-value=3.3e+02 Score=21.69 Aligned_cols=59 Identities=7% Similarity=0.064 Sum_probs=34.8
Q ss_pred HHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 004352 207 MLGMGISPDIATFNKLIHTLCKKGNVRESEKLFNKVLKRGVSPNLFTFNMFIQGLCRKGA 266 (759)
Q Consensus 207 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 266 (759)
+.+.|..++.. -..++..+...+..-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 13 l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 13 LKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 44556554443 233445555556666777777777766655566665555666666554
Done!