Query 004353
Match_columns 759
No_of_seqs 382 out of 2800
Neff 6.0
Searched_HMMs 46136
Date Thu Mar 28 21:59:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004353.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004353hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02784 alpha-amylase 100.0 1E-159 2E-164 1378.2 58.6 745 1-755 1-749 (894)
2 PRK10785 maltodextrin glucosid 100.0 7.6E-47 1.6E-51 439.8 23.4 324 393-733 47-405 (598)
3 PLN02361 alpha-amylase 100.0 7.6E-46 1.6E-50 410.4 24.2 244 507-754 10-256 (401)
4 PLN00196 alpha-amylase; Provis 100.0 2.5E-45 5.5E-50 410.2 25.4 248 507-754 23-282 (428)
5 PRK09505 malS alpha-amylase; R 100.0 5E-41 1.1E-45 392.5 21.7 219 470-708 190-508 (683)
6 PRK09441 cytoplasmic alpha-amy 100.0 5.8E-40 1.3E-44 373.7 21.4 233 508-754 3-299 (479)
7 TIGR02456 treS_nterm trehalose 100.0 5.4E-38 1.2E-42 362.2 19.8 204 468-707 4-242 (539)
8 TIGR02403 trehalose_treC alpha 100.0 6.9E-37 1.5E-41 353.0 19.9 203 470-708 5-248 (543)
9 PRK10933 trehalose-6-phosphate 100.0 1.8E-36 4E-41 349.6 19.9 202 468-708 9-255 (551)
10 PF00128 Alpha-amylase: Alpha 100.0 1.3E-36 2.8E-41 321.0 12.8 182 524-709 1-202 (316)
11 PLN02784 alpha-amylase 100.0 5.4E-35 1.2E-39 340.5 15.4 163 47-216 229-394 (894)
12 TIGR02100 glgX_debranch glycog 100.0 1.4E-34 3.1E-39 340.2 18.6 198 523-736 178-415 (688)
13 PRK03705 glycogen debranching 100.0 4E-33 8.7E-38 326.0 20.4 221 502-736 148-409 (658)
14 TIGR02104 pulA_typeI pullulana 100.0 6.5E-33 1.4E-37 323.9 20.3 207 467-709 125-353 (605)
15 TIGR02402 trehalose_TreZ malto 100.0 1.5E-32 3.2E-37 316.7 21.2 203 502-733 91-317 (542)
16 PRK14510 putative bifunctional 100.0 2.2E-32 4.9E-37 337.6 23.3 348 345-735 9-416 (1221)
17 PRK12313 glycogen branching en 100.0 4.4E-32 9.5E-37 318.5 23.4 212 506-733 149-398 (633)
18 TIGR01515 branching_enzym alph 100.0 5.2E-32 1.1E-36 316.5 20.2 183 505-708 139-352 (613)
19 COG0366 AmyA Glycosidases [Car 100.0 5.6E-32 1.2E-36 306.9 16.0 186 470-686 1-205 (505)
20 TIGR02102 pullulan_Gpos pullul 100.0 2.9E-31 6.4E-36 321.4 20.3 188 502-708 449-675 (1111)
21 PRK05402 glycogen branching en 100.0 1.2E-30 2.6E-35 310.3 20.9 168 524-707 262-460 (726)
22 KOG0471 Alpha-amylase [Carbohy 100.0 4E-31 8.6E-36 304.4 15.9 244 505-750 18-286 (545)
23 TIGR02103 pullul_strch alpha-1 100.0 1.8E-30 3.9E-35 309.4 16.2 237 424-708 208-529 (898)
24 PRK12568 glycogen branching en 100.0 3.7E-29 7.9E-34 292.6 23.2 216 502-733 244-498 (730)
25 PRK14705 glycogen branching en 100.0 1.1E-28 2.4E-33 300.8 20.4 184 504-708 747-961 (1224)
26 PRK14706 glycogen branching en 100.0 9.5E-29 2.1E-33 288.8 19.0 186 505-708 145-361 (639)
27 PLN02877 alpha-amylase/limit d 100.0 8E-29 1.7E-33 294.8 17.3 167 530-708 376-600 (970)
28 COG1523 PulA Type II secretory 100.0 2.9E-29 6.3E-34 291.8 10.3 227 499-736 166-435 (697)
29 PLN02960 alpha-amylase 100.0 1.1E-27 2.4E-32 280.9 22.2 212 505-734 396-648 (897)
30 TIGR03852 sucrose_gtfA sucrose 100.0 4.9E-28 1.1E-32 271.9 16.3 214 510-735 3-277 (470)
31 PRK13840 sucrose phosphorylase 100.0 3.9E-28 8.4E-33 274.2 14.8 191 509-708 4-237 (495)
32 PLN02447 1,4-alpha-glucan-bran 100.0 2.8E-27 6.1E-32 277.3 21.5 170 524-708 247-449 (758)
33 TIGR02401 trehalose_TreY malto 99.9 2.7E-25 5.8E-30 261.9 22.3 197 523-719 12-304 (825)
34 COG0296 GlgB 1,4-alpha-glucan 99.9 1.5E-24 3.2E-29 249.2 17.9 191 502-710 142-362 (628)
35 TIGR02455 TreS_stutzeri trehal 99.9 6.8E-24 1.5E-28 241.5 15.8 208 528-754 75-371 (688)
36 smart00642 Aamy Alpha-amylase 99.9 7.4E-24 1.6E-28 209.7 10.7 92 510-601 2-97 (166)
37 KOG0470 1,4-alpha-glucan branc 99.9 4.2E-23 9.2E-28 235.5 11.0 168 504-686 229-409 (757)
38 PRK14511 maltooligosyl trehalo 99.8 3.6E-20 7.8E-25 219.6 19.7 80 523-602 16-97 (879)
39 PRK14507 putative bifunctional 99.8 3.2E-18 6.9E-23 213.8 18.4 79 523-601 754-834 (1693)
40 PLN03244 alpha-amylase; Provis 99.7 5.2E-17 1.1E-21 188.6 15.0 158 506-708 402-589 (872)
41 KOG2212 Alpha-amylase [Carbohy 99.7 4.6E-17 1E-21 171.9 12.7 188 510-708 30-255 (504)
42 COG3280 TreY Maltooligosyl tre 99.7 3.4E-16 7.4E-21 178.7 16.2 80 523-602 15-96 (889)
43 TIGR01531 glyc_debranch glycog 99.4 2.9E-13 6.2E-18 165.5 9.0 80 523-602 128-213 (1464)
44 PF14872 GHL5: Hypothetical gl 98.5 6.5E-07 1.4E-11 102.4 11.4 145 507-684 181-393 (811)
45 PF14701 hDGE_amylase: glucano 98.5 3.4E-07 7.4E-12 102.5 8.9 80 523-602 18-105 (423)
46 PF02638 DUF187: Glycosyl hydr 98.1 1.8E-05 3.8E-10 86.5 12.2 139 525-680 17-162 (311)
47 PF14871 GHL6: Hypothetical gl 98.1 2.6E-05 5.6E-10 74.9 11.4 130 530-680 3-132 (132)
48 PF02324 Glyco_hydro_70: Glyco 98.0 6.3E-06 1.4E-10 95.3 6.5 77 525-601 585-674 (809)
49 COG1649 Uncharacterized protei 97.5 0.00044 9.4E-09 77.8 10.0 139 526-681 63-208 (418)
50 KOG3625 Alpha amylase [Carbohy 96.7 0.0017 3.6E-08 77.4 5.1 79 524-602 139-225 (1521)
51 PF02065 Melibiase: Melibiase; 96.7 0.03 6.6E-07 63.3 14.8 168 524-715 55-244 (394)
52 cd06597 GH31_transferase_CtsY 96.6 0.014 3.1E-07 64.6 11.2 144 524-682 21-187 (340)
53 PF13199 Glyco_hydro_66: Glyco 96.5 0.021 4.7E-07 67.0 12.5 146 524-682 115-268 (559)
54 cd06592 GH31_glucosidase_KIAA1 96.5 0.016 3.4E-07 63.3 10.3 132 524-682 27-165 (303)
55 PLN02316 synthase/transferase 96.0 0.15 3.2E-06 64.0 16.6 73 312-401 345-422 (1036)
56 PLN02316 synthase/transferase 95.9 0.31 6.6E-06 61.2 18.7 228 121-400 345-581 (1036)
57 cd06593 GH31_xylosidase_YicI Y 95.8 0.059 1.3E-06 58.7 10.9 133 523-682 20-159 (308)
58 cd06594 GH31_glucosidase_YihQ 95.3 0.16 3.4E-06 55.9 11.9 135 525-682 21-166 (317)
59 PF03423 CBM_25: Carbohydrate 95.2 0.11 2.3E-06 46.5 8.3 37 174-213 50-86 (87)
60 cd06591 GH31_xylosidase_XylS X 94.8 0.21 4.5E-06 54.9 11.2 132 524-682 21-159 (319)
61 cd06599 GH31_glycosidase_Aec37 94.7 0.26 5.6E-06 54.1 11.6 134 526-682 28-168 (317)
62 PF13200 DUF4015: Putative gly 94.6 0.3 6.5E-06 53.7 11.7 132 524-682 10-147 (316)
63 cd06600 GH31_MGAM-like This fa 94.2 0.24 5.1E-06 54.5 9.8 131 524-682 21-160 (317)
64 cd06602 GH31_MGAM_SI_GAA This 93.9 0.56 1.2E-05 52.1 12.2 139 525-682 22-165 (339)
65 cd06598 GH31_transferase_CtsZ 93.9 0.3 6.5E-06 53.6 9.9 133 525-682 22-164 (317)
66 PRK14582 pgaB outer membrane N 93.7 0.64 1.4E-05 56.1 12.7 132 526-680 333-466 (671)
67 PF02324 Glyco_hydro_70: Glyco 93.6 0.11 2.3E-06 61.5 5.8 67 642-708 139-227 (809)
68 PF14488 DUF4434: Domain of un 93.1 0.44 9.5E-06 47.7 8.7 85 511-598 5-89 (166)
69 cd06604 GH31_glucosidase_II_Ma 92.7 0.75 1.6E-05 50.9 10.8 129 525-682 22-159 (339)
70 PF01055 Glyco_hydro_31: Glyco 92.4 0.58 1.2E-05 53.5 9.7 136 524-682 40-180 (441)
71 PF00150 Cellulase: Cellulase 91.7 0.23 5E-06 52.1 4.9 60 528-597 22-85 (281)
72 PF07745 Glyco_hydro_53: Glyco 91.6 0.55 1.2E-05 52.0 7.9 56 530-598 27-82 (332)
73 TIGR01370 cysRS possible cyste 91.3 0.63 1.4E-05 51.3 7.9 56 646-702 135-210 (315)
74 cd06595 GH31_xylosidase_XylS-l 90.5 1.4 2.9E-05 47.9 9.6 129 524-681 22-158 (292)
75 TIGR01531 glyc_debranch glycog 90.3 0.45 9.7E-06 60.9 6.3 57 652-710 487-547 (1464)
76 PRK10426 alpha-glucosidase; Pr 90.1 1.2 2.6E-05 53.6 9.6 133 526-682 220-363 (635)
77 cd06542 GH18_EndoS-like Endo-b 89.5 1.2 2.6E-05 47.0 8.0 89 572-705 49-152 (255)
78 PLN02763 hydrolase, hydrolyzin 89.3 2.1 4.6E-05 53.6 10.8 134 525-681 199-335 (978)
79 cd06589 GH31 The enzymes of gl 89.1 1.9 4.1E-05 46.0 9.2 63 523-594 20-86 (265)
80 PRK10658 putative alpha-glucos 87.4 1.2 2.6E-05 53.9 7.0 130 526-682 282-418 (665)
81 PLN02635 disproportionating en 86.6 2.4 5.1E-05 50.1 8.7 123 574-708 224-374 (538)
82 COG1501 Alpha-glucosidases, fa 86.5 1.4 3E-05 54.2 7.0 87 576-682 323-415 (772)
83 KOG3625 Alpha amylase [Carbohy 85.4 1.8 3.9E-05 52.9 6.8 59 652-712 509-571 (1521)
84 PF10566 Glyco_hydro_97: Glyco 85.4 5.7 0.00012 43.0 10.2 64 522-592 27-91 (273)
85 cd06601 GH31_lyase_GLase GLase 84.4 7.2 0.00016 43.4 10.8 108 525-681 22-132 (332)
86 cd02875 GH18_chitobiase Chitob 83.4 2.2 4.8E-05 47.7 6.3 29 652-680 92-120 (358)
87 PRK14508 4-alpha-glucanotransf 83.0 9.6 0.00021 44.7 11.5 123 574-708 198-348 (497)
88 PF02449 Glyco_hydro_42: Beta- 82.1 3.2 6.9E-05 46.5 6.9 121 527-681 10-137 (374)
89 cd06603 GH31_GANC_GANAB_alpha 81.9 5.5 0.00012 44.2 8.6 129 525-681 22-161 (339)
90 COG3867 Arabinogalactan endo-1 81.4 5.3 0.00011 43.5 7.8 58 529-595 65-125 (403)
91 KOG1065 Maltase glucoamylase a 76.4 16 0.00035 44.8 10.7 135 524-681 308-447 (805)
92 PF03423 CBM_25: Carbohydrate 76.0 4.4 9.6E-05 36.2 4.6 35 363-397 52-86 (87)
93 cd06562 GH20_HexA_HexB-like Be 73.8 28 0.00061 38.9 11.3 75 525-601 16-98 (348)
94 PF14701 hDGE_amylase: glucano 73.7 5.3 0.00012 45.7 5.5 45 652-698 374-422 (423)
95 PF14883 GHL13: Hypothetical g 73.6 47 0.001 36.3 12.3 124 527-678 17-142 (294)
96 PF03198 Glyco_hydro_72: Gluca 73.4 5.4 0.00012 43.9 5.2 54 527-601 53-106 (314)
97 PF01120 Alpha_L_fucos: Alpha- 72.4 21 0.00045 39.8 9.8 144 528-705 92-245 (346)
98 cd06547 GH85_ENGase Endo-beta- 72.2 10 0.00022 42.4 7.2 21 577-597 49-69 (339)
99 COG2730 BglC Endoglucanase [Ca 71.1 6.7 0.00015 44.7 5.6 59 528-594 74-136 (407)
100 cd06545 GH18_3CO4_chitinase Th 68.8 15 0.00032 38.9 7.3 79 573-696 45-128 (253)
101 PF13380 CoA_binding_2: CoA bi 68.4 8.9 0.00019 35.9 4.9 44 525-592 64-107 (116)
102 PF05913 DUF871: Bacterial pro 68.4 8 0.00017 43.5 5.4 59 525-598 12-71 (357)
103 TIGR00217 malQ 4-alpha-glucano 68.2 20 0.00042 42.4 8.7 123 574-708 212-363 (513)
104 PF01301 Glyco_hydro_35: Glyco 68.0 4.8 0.0001 44.4 3.5 61 528-596 25-85 (319)
105 cd02871 GH18_chitinase_D-like 67.9 19 0.00042 39.4 8.2 62 572-681 58-119 (312)
106 PRK11052 malQ 4-alpha-glucanot 65.8 20 0.00043 43.8 8.4 24 574-597 355-380 (695)
107 PRK15452 putative protease; Pr 65.3 51 0.0011 38.2 11.2 50 531-592 14-64 (443)
108 cd06569 GH20_Sm-chitobiase-lik 63.9 19 0.00041 41.7 7.5 77 525-601 20-125 (445)
109 smart00812 Alpha_L_fucos Alpha 63.9 1.6E+02 0.0034 33.6 14.6 139 529-706 83-235 (384)
110 cd02857 CD_pullulan_degrading_ 62.8 6.6 0.00014 35.9 2.9 102 345-465 7-113 (116)
111 PF02446 Glyco_hydro_77: 4-alp 60.7 23 0.00049 41.6 7.4 115 574-708 192-337 (496)
112 PRK10076 pyruvate formate lyas 60.4 27 0.00059 36.3 7.2 62 525-592 143-211 (213)
113 COG3589 Uncharacterized conser 58.1 12 0.00026 41.6 4.2 59 525-597 14-72 (360)
114 cd06565 GH20_GcnA-like Glycosy 57.5 35 0.00076 37.3 7.8 71 525-601 15-88 (301)
115 TIGR03849 arch_ComA phosphosul 57.3 27 0.00058 37.2 6.5 46 530-593 74-119 (237)
116 TIGR03356 BGL beta-galactosida 57.0 23 0.0005 40.7 6.6 63 526-595 53-115 (427)
117 PRK14508 4-alpha-glucanotransf 56.8 24 0.00053 41.4 6.8 53 523-575 22-76 (497)
118 PRK13210 putative L-xylulose 5 55.8 1.2E+02 0.0025 32.1 11.3 54 528-592 17-70 (284)
119 TIGR01210 conserved hypothetic 54.2 26 0.00056 38.6 6.1 61 530-598 117-179 (313)
120 PF02679 ComA: (2R)-phospho-3- 54.0 27 0.00059 37.3 6.0 50 528-595 85-134 (244)
121 PLN03059 beta-galactosidase; P 54.0 25 0.00055 43.6 6.5 59 527-593 59-117 (840)
122 PRK07094 biotin synthase; Prov 53.6 24 0.00051 38.6 5.7 65 530-602 129-193 (323)
123 PF00728 Glyco_hydro_20: Glyco 52.6 17 0.00038 39.9 4.6 75 525-601 16-101 (351)
124 PRK11052 malQ 4-alpha-glucanot 52.4 35 0.00076 41.8 7.4 71 509-579 145-222 (695)
125 cd06568 GH20_SpHex_like A subg 51.7 45 0.00097 37.0 7.6 75 525-601 16-103 (329)
126 PRK15447 putative protease; Pr 51.6 41 0.00088 36.8 7.1 48 531-592 19-66 (301)
127 TIGR00539 hemN_rel putative ox 51.5 26 0.00056 39.1 5.7 65 530-602 100-165 (360)
128 PRK08207 coproporphyrinogen II 51.2 29 0.00063 40.7 6.2 65 530-602 269-334 (488)
129 cd04735 OYE_like_4_FMN Old yel 50.6 1.2E+02 0.0026 33.9 10.8 28 573-602 77-104 (353)
130 PF13204 DUF4038: Protein of u 50.6 40 0.00087 36.7 6.8 69 526-598 29-110 (289)
131 PLN02950 4-alpha-glucanotransf 49.2 44 0.00095 42.2 7.6 54 524-577 280-339 (909)
132 PRK05628 coproporphyrinogen II 49.1 31 0.00067 38.7 5.9 65 530-602 108-173 (375)
133 PRK08208 coproporphyrinogen II 49.0 27 0.00058 40.1 5.4 65 530-602 141-206 (430)
134 PRK06256 biotin synthase; Vali 49.0 30 0.00064 38.1 5.6 60 530-598 152-211 (336)
135 cd04734 OYE_like_3_FMN Old yel 48.8 3.5E+02 0.0075 30.2 14.0 67 527-601 33-102 (343)
136 PLN02635 disproportionating en 48.5 41 0.00089 40.0 6.9 69 509-577 31-105 (538)
137 COG2342 Predicted extracellula 47.6 1E+02 0.0022 33.6 9.0 121 526-684 29-151 (300)
138 TIGR00433 bioB biotin syntheta 47.4 46 0.001 35.7 6.7 60 530-598 123-182 (296)
139 PF08821 CGGC: CGGC domain; I 46.8 65 0.0014 30.1 6.6 55 525-592 50-104 (107)
140 cd06564 GH20_DspB_LnbB-like Gl 45.9 61 0.0013 35.8 7.4 73 525-601 15-110 (326)
141 cd02742 GH20_hexosaminidase Be 44.6 50 0.0011 36.1 6.5 75 525-601 14-100 (303)
142 PRK05660 HemN family oxidoredu 44.2 42 0.0009 37.9 6.0 64 531-602 108-172 (378)
143 cd02931 ER_like_FMN Enoate red 44.1 5.3E+02 0.011 29.2 15.8 27 573-601 82-109 (382)
144 COG0041 PurE Phosphoribosylcar 43.9 63 0.0014 32.2 6.2 52 524-594 13-64 (162)
145 PLN02950 4-alpha-glucanotransf 43.7 49 0.0011 41.8 6.9 24 574-597 461-484 (909)
146 PLN03236 4-alpha-glucanotransf 43.0 44 0.00096 41.2 6.2 25 574-598 274-298 (745)
147 PRK09936 hypothetical protein; 41.8 80 0.0017 34.6 7.2 59 526-598 37-96 (296)
148 cd06546 GH18_CTS3_chitinase GH 41.8 97 0.0021 33.1 8.0 44 653-696 93-140 (256)
149 PF00724 Oxidored_FMN: NADH:fl 41.3 98 0.0021 34.4 8.2 67 528-602 37-106 (341)
150 COG1306 Uncharacterized conser 40.7 5.3E+02 0.011 28.7 13.0 185 525-734 75-291 (400)
151 PRK13347 coproporphyrinogen II 40.7 51 0.0011 38.1 6.1 64 530-601 152-216 (453)
152 PRK05904 coproporphyrinogen II 40.3 51 0.0011 36.9 5.8 65 530-602 103-168 (353)
153 TIGR00538 hemN oxygen-independ 39.0 54 0.0012 37.9 5.9 65 530-602 151-216 (455)
154 cd06543 GH18_PF-ChiA-like PF-C 38.5 3.7E+02 0.0081 29.4 12.0 113 534-699 19-140 (294)
155 PLN03236 4-alpha-glucanotransf 38.4 76 0.0016 39.2 7.2 54 524-577 80-139 (745)
156 PRK01060 endonuclease IV; Prov 38.2 66 0.0014 34.1 6.1 52 527-590 12-63 (281)
157 KOG2499 Beta-N-acetylhexosamin 37.7 1.3E+02 0.0028 35.2 8.4 30 572-601 248-278 (542)
158 PRK09852 cryptic 6-phospho-bet 37.6 1.2E+02 0.0026 35.5 8.5 64 526-595 70-133 (474)
159 cd01335 Radical_SAM Radical SA 37.4 54 0.0012 31.5 4.9 65 530-601 88-152 (204)
160 cd02803 OYE_like_FMN_family Ol 37.0 5.2E+02 0.011 28.1 13.0 63 532-602 38-103 (327)
161 cd06563 GH20_chitobiase-like T 37.0 81 0.0018 35.3 6.8 77 525-601 16-114 (357)
162 PRK08446 coproporphyrinogen II 36.9 65 0.0014 35.9 6.0 64 530-601 98-162 (350)
163 TIGR01211 ELP3 histone acetylt 36.5 61 0.0013 38.4 5.9 65 530-602 206-270 (522)
164 PF01212 Beta_elim_lyase: Beta 36.2 33 0.00072 37.4 3.4 58 525-595 107-166 (290)
165 PRK09249 coproporphyrinogen II 36.0 69 0.0015 37.0 6.2 65 530-602 151-216 (453)
166 PF02446 Glyco_hydro_77: 4-alp 35.7 33 0.00072 40.2 3.6 54 524-577 15-71 (496)
167 PRK14581 hmsF outer membrane N 35.7 3.9E+02 0.0084 32.9 12.5 130 527-679 334-465 (672)
168 TIGR03471 HpnJ hopanoid biosyn 35.5 72 0.0016 37.0 6.2 64 530-601 287-350 (472)
169 PRK14510 putative bifunctional 35.5 71 0.0015 41.8 6.7 68 508-575 725-799 (1221)
170 cd02929 TMADH_HD_FMN Trimethyl 35.0 3.1E+02 0.0067 30.9 11.0 28 573-602 82-109 (370)
171 cd05014 SIS_Kpsf KpsF-like pro 34.5 1E+02 0.0022 28.4 6.0 59 534-592 20-79 (128)
172 cd04733 OYE_like_2_FMN Old yel 34.4 3.9E+02 0.0084 29.6 11.6 28 573-602 81-108 (338)
173 PRK07379 coproporphyrinogen II 34.2 65 0.0014 36.7 5.5 64 530-601 115-179 (400)
174 KOG0496 Beta-galactosidase [Ca 33.6 83 0.0018 38.0 6.2 59 529-595 51-109 (649)
175 cd06570 GH20_chitobiase-like_1 33.4 1.7E+02 0.0038 32.2 8.5 75 525-601 16-96 (311)
176 smart00052 EAL Putative diguan 33.2 51 0.0011 33.5 4.1 75 525-600 131-216 (241)
177 PF07555 NAGidase: beta-N-acet 33.1 2.8E+02 0.006 30.7 9.9 69 512-592 4-74 (306)
178 COG1902 NemA NADH:flavin oxido 32.9 7.7E+02 0.017 27.9 14.6 66 529-602 41-109 (363)
179 PF07071 DUF1341: Protein of u 32.8 1.1E+02 0.0024 31.9 6.2 45 528-590 136-180 (218)
180 PRK10605 N-ethylmaleimide redu 32.7 6.2E+02 0.013 28.5 12.9 28 573-602 78-105 (362)
181 PRK06294 coproporphyrinogen II 31.8 82 0.0018 35.4 5.8 65 530-602 103-168 (370)
182 PLN02801 beta-amylase 31.6 1.3E+02 0.0028 35.5 7.2 64 525-601 35-101 (517)
183 PRK08599 coproporphyrinogen II 31.5 81 0.0018 35.4 5.7 65 530-602 100-165 (377)
184 PLN02803 beta-amylase 31.1 1.3E+02 0.0028 35.6 7.1 64 526-602 106-172 (548)
185 COG0826 Collagenase and relate 30.7 1.3E+02 0.0028 33.8 7.0 55 530-596 16-71 (347)
186 PTZ00445 p36-lilke protein; Pr 30.5 1.1E+02 0.0023 32.3 5.8 62 527-592 29-96 (219)
187 PRK09856 fructoselysine 3-epim 30.4 1.2E+02 0.0026 31.9 6.5 52 528-592 14-65 (275)
188 COG3669 Alpha-L-fucosidase [Ca 30.3 4.9E+02 0.011 30.0 11.2 67 531-602 58-126 (430)
189 COG2873 MET17 O-acetylhomoseri 29.7 1.1E+02 0.0025 34.7 6.2 70 523-597 112-187 (426)
190 smart00729 Elp3 Elongator prot 29.3 1.1E+02 0.0024 29.8 5.7 63 530-600 100-163 (216)
191 PF01373 Glyco_hydro_14: Glyco 29.0 61 0.0013 37.1 4.1 66 523-601 12-80 (402)
192 PLN02905 beta-amylase 28.9 1.5E+02 0.0033 35.7 7.3 65 525-602 284-351 (702)
193 PLN02389 biotin synthase 28.6 1.4E+02 0.0031 33.8 7.0 63 529-601 177-239 (379)
194 TIGR00542 hxl6Piso_put hexulos 28.2 1.2E+02 0.0026 32.2 6.1 53 528-591 17-69 (279)
195 cd00609 AAT_like Aspartate ami 28.1 1.1E+02 0.0023 32.7 5.7 54 531-598 123-176 (350)
196 COG1533 SplB DNA repair photol 28.1 1.3E+02 0.0027 33.2 6.2 59 525-601 167-226 (297)
197 PRK13561 putative diguanylate 28.0 87 0.0019 37.6 5.4 75 524-599 531-616 (651)
198 cd00287 ribokinase_pfkB_like r 27.5 91 0.002 30.5 4.7 52 533-597 43-94 (196)
199 PF00155 Aminotran_1_2: Aminot 27.5 87 0.0019 34.1 5.0 65 523-601 129-195 (363)
200 PLN02705 beta-amylase 27.3 1.6E+02 0.0034 35.6 7.0 64 525-601 266-332 (681)
201 PLN00197 beta-amylase; Provisi 27.0 1.7E+02 0.0037 34.9 7.2 64 526-602 126-192 (573)
202 PF13407 Peripla_BP_4: Peripla 26.7 1.5E+02 0.0032 30.4 6.2 48 523-592 38-85 (257)
203 cd04724 Tryptophan_synthase_al 26.6 1.3E+02 0.0028 31.8 5.8 50 528-599 92-141 (242)
204 TIGR02666 moaA molybdenum cofa 26.0 1.7E+02 0.0037 32.1 6.9 60 530-596 102-162 (334)
205 PLN02808 alpha-galactosidase 26.0 1.2E+02 0.0025 34.7 5.6 62 523-591 45-114 (386)
206 PLN02161 beta-amylase 25.8 2E+02 0.0043 34.0 7.4 64 525-601 115-181 (531)
207 cd02933 OYE_like_FMN Old yello 25.4 6.8E+02 0.015 27.9 11.5 28 573-602 76-103 (338)
208 PRK09057 coproporphyrinogen II 25.4 1.1E+02 0.0024 34.4 5.4 64 531-602 105-168 (380)
209 COG0520 csdA Selenocysteine ly 25.1 55 0.0012 37.5 2.9 69 533-602 129-209 (405)
210 PRK06582 coproporphyrinogen II 24.9 1.4E+02 0.003 34.0 6.1 65 530-602 111-175 (390)
211 TIGR01233 lacG 6-phospho-beta- 24.8 3.4E+02 0.0074 31.7 9.3 65 526-599 52-116 (467)
212 cd05008 SIS_GlmS_GlmD_1 SIS (S 24.6 1.5E+02 0.0033 27.1 5.3 61 531-592 16-78 (126)
213 PF12031 DUF3518: Domain of un 24.4 20 0.00043 38.3 -0.8 46 303-350 93-147 (257)
214 PRK05799 coproporphyrinogen II 24.3 1.4E+02 0.003 33.4 5.9 65 530-602 99-164 (374)
215 PRK00164 moaA molybdenum cofac 24.3 1.9E+02 0.0041 31.7 6.8 60 529-596 107-167 (331)
216 PTZ00376 aspartate aminotransf 24.2 2.3E+02 0.0051 31.8 7.8 64 523-601 160-223 (404)
217 PLN02411 12-oxophytodienoate r 24.0 7.8E+02 0.017 28.0 11.8 28 573-602 86-113 (391)
218 PRK08573 phosphomethylpyrimidi 23.8 1.4E+02 0.003 34.6 5.8 75 523-599 13-109 (448)
219 TIGR03581 EF_0839 conserved hy 23.6 1.5E+02 0.0032 31.3 5.3 25 526-550 134-158 (236)
220 PF02581 TMP-TENI: Thiamine mo 23.5 1.3E+02 0.0028 30.1 5.0 47 533-592 108-154 (180)
221 PRK13361 molybdenum cofactor b 23.5 1.8E+02 0.004 32.0 6.5 61 529-597 103-164 (329)
222 cd00019 AP2Ec AP endonuclease 23.4 2.2E+02 0.0047 30.2 6.9 22 527-548 10-31 (279)
223 cd04747 OYE_like_5_FMN Old yel 23.1 1.1E+03 0.024 26.6 13.8 27 573-601 77-103 (361)
224 smart00518 AP2Ec AP endonuclea 23.1 2.1E+02 0.0045 30.2 6.7 21 528-548 11-31 (273)
225 PRK11059 regulatory protein Cs 23.0 1E+02 0.0022 37.2 4.7 75 524-599 530-615 (640)
226 TIGR02026 BchE magnesium-proto 22.9 1.5E+02 0.0032 34.8 6.0 64 530-601 287-350 (497)
227 PRK10060 RNase II stability mo 22.8 61 0.0013 39.3 2.9 75 524-599 538-623 (663)
228 TIGR03127 RuMP_HxlB 6-phospho 22.6 2.3E+02 0.0049 28.0 6.5 55 534-592 50-104 (179)
229 PRK13209 L-xylulose 5-phosphat 22.2 1.8E+02 0.0038 30.9 5.9 54 528-592 22-75 (283)
230 COG1809 (2R)-phospho-3-sulfola 22.2 1.9E+02 0.0041 30.7 5.8 48 528-593 91-138 (258)
231 PRK09257 aromatic amino acid a 21.8 2.4E+02 0.0053 31.5 7.3 62 523-600 156-218 (396)
232 TIGR03551 F420_cofH 7,8-dideme 21.7 1.1E+02 0.0025 33.8 4.5 65 530-600 141-205 (343)
233 cd00945 Aldolase_Class_I Class 21.4 2.5E+02 0.0055 27.5 6.5 59 526-599 64-125 (201)
234 COG2200 Rtn c-di-GMP phosphodi 21.4 1.4E+02 0.0031 31.7 5.0 67 525-597 134-216 (256)
235 COG3661 AguA Alpha-glucuronida 21.0 2.3E+02 0.005 32.9 6.6 67 522-597 178-244 (684)
236 PRK09058 coproporphyrinogen II 21.0 1.9E+02 0.004 33.6 6.2 64 530-601 163-227 (449)
237 PRK08898 coproporphyrinogen II 21.0 1.5E+02 0.0033 33.6 5.4 65 530-602 122-186 (394)
238 PLN02721 threonine aldolase 20.9 1.8E+02 0.004 31.4 5.9 60 524-596 118-180 (353)
239 cd00598 GH18_chitinase-like Th 20.6 1.1E+02 0.0024 30.7 3.8 47 652-698 84-139 (210)
240 cd03412 CbiK_N Anaerobic cobal 20.2 1.7E+02 0.0038 27.7 4.8 60 526-585 55-125 (127)
241 TIGR01212 radical SAM protein, 20.2 2E+02 0.0042 31.5 5.9 66 528-601 124-190 (302)
242 PRK09589 celA 6-phospho-beta-g 20.2 4.6E+02 0.01 30.7 9.2 67 526-600 66-132 (476)
243 KOG0259 Tyrosine aminotransfer 20.2 2.1E+02 0.0046 32.7 6.0 77 524-601 134-246 (447)
244 TIGR02171 Fb_sc_TIGR02171 Fibr 20.1 2.5E+02 0.0053 35.5 7.1 26 573-598 807-832 (912)
245 PRK05967 cystathionine beta-ly 20.1 1.2E+02 0.0025 34.7 4.2 29 570-598 162-190 (395)
246 cd07944 DRE_TIM_HOA_like 4-hyd 20.0 1.1E+03 0.024 25.3 11.9 46 530-595 85-130 (266)
No 1
>PLN02784 alpha-amylase
Probab=100.00 E-value=1.1e-159 Score=1378.17 Aligned_cols=745 Identities=71% Similarity=1.203 Sum_probs=691.8
Q ss_pred CcceeccccchhhhhccCCCCCCCcccccccceeeccccCCCcccccccccccceecccCCCCCCCCCCCCCCCC---CC
Q 004353 1 MSTVTIRPLLPSYRRANLNFRDRTNILLKPNYINYSIKSAPNARRFCSFKKLQKITVSSSTSTSTSPATSTDTTP---VR 77 (759)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 77 (759)
||||||||||+||||+++.++++++ .+|+||||++++|+||++||||+....+.-. ..++++++|++ .+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 72 (894)
T PLN02784 1 MSTVCIESLLHHSGLEKNSKIGRGK--RSPSSLNLSLKSLTNGKSFCNFKMSVGVSST------TRRASSSDTALVETAQ 72 (894)
T ss_pred CCceeeHHHHhHHhhccccccCccc--ccccccccccccccCCcccccccCCCCcccc------cccccccceeeeeccc
Confidence 9999999999999999999977433 3499999999999999999999876544222 12467777877 56
Q ss_pred CCcceeeeeeeeeeeeeeCCeEEEEEEecCCCCceEEEEEecCCCceEEEeeeeccCCCCCCccCCCCCCCCCCcccccc
Q 004353 78 PGDVFFKETFPLKRTHAVEGKMFVRLQKGKDEKNWQLSVGCNIPGKWILHWGVSFVGDNGSEWDQPPKKMRPPGSVSIKD 157 (759)
Q Consensus 78 ~~~~~~~e~~~~~~~~~~~~~~~v~v~~~~~~~~~~v~~~td~~~~~vLHWgv~~~~~~~~eW~~Pp~~~~P~gt~~~~~ 157 (759)
..+++|+|.|++.++++|||+|+|+|. ++++|+++|+|+||+|++|||||||++.++.++||++||++++||||+.+++
T Consensus 73 ~~~v~~kk~F~v~~~e~ve~~~~v~l~-~~~~g~~kv~v~t~~~~~~vLHWGVs~~~~~~~EW~~PP~~~~PpgS~~~~~ 151 (894)
T PLN02784 73 SDDVFFKETFPVKRTEKVEGKIYVRLE-EKNEKNWKLSVGCSIPGKWILHWGVSYVGDTGSEWDQPPEEMRPPGSIAIKD 151 (894)
T ss_pred cccceeeeeeeecccceecceeEEEEE-ccCCCcEEEEEEecCCCCeEEEEeEecCCCCCccccCCCcccCCCCcEEecC
Confidence 889999999999999999999999997 7899999999999999999999999999989999999999999999999999
Q ss_pred ceeccccccccCCCceeEEEEeecCCCCceeeEEEEEeCCcccccccCCcceeeecccccccCCCccccccccCCCchHH
Q 004353 158 YAIETPLKKLAEGDVFDQVNIDFDTRSDIAAINFVLKDEETGAWYQHRGRDFKVPLVDYLQHDGNVIGTKSTFGLWPGAL 237 (759)
Q Consensus 158 ~A~eT~f~~~~~~~~~~~~~i~l~~d~~~~~i~FVlk~~~~~~W~k~~G~df~v~l~~~~~~~~d~~g~~~~~~~w~~~l 237 (759)
+||||||++++.|+..+++.|+|++++++.||+||||++++|+||||||+||||+|++.++++++.+|+++.+++|||.|
T Consensus 152 ~A~eT~f~~~s~~~~~~~v~iel~l~~~~~ai~FVLk~~~~g~W~~~~G~DF~V~l~~~~~~~~~~~~~~~~~~~~~~~l 231 (894)
T PLN02784 152 YAIETPLKKSSEGDSFYEVTIDLDPNSSIAAINFVLKDEETGAWYQHKGRDFKVPLVDDLPDGGNNVGAKKGFGIWPGAL 231 (894)
T ss_pred eEEeccccccccCCcceeEEEEEeeCCceeeEEEEEEeCCCCchhhcCCccEEEecccccccccceeehhhhcCcCcCcc
Confidence 99999999988888888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhccCCCCCCCCChhhhhhHhHHhhhhhcccccchhhhhcccceeEEEEEeccCCCceEEEEecCCCCCeEE
Q 004353 238 GQLSKMILKADTSQSGIQDSSSESCELKQENKHLEGFYEELPIVKEIIIENTVSVSVRKCPETAKTLLNLETDLTGDVVV 317 (759)
Q Consensus 238 ~~is~~~~~~e~~~~~~~~~~~~~~a~~~~~k~l~~~~e~~~i~k~~~~~~~~~v~v~~~~~~~~~~v~~~td~~~~~vl 317 (759)
++||++++++|.+++..++......+.....++|++|||++||+|++.++|.++|+|+||++++|++|+|+||+|+|+||
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~v~v~~~~~~~k~~v~v~td~~~~vvl 311 (894)
T PLN02784 232 GQLSNILLKDEGSPSKEQDKSSSELDSAAERKGLKGFYEEMPIVKRVAVDNSVTVTVRKCPETAKNLVYLETDLPGDVVV 311 (894)
T ss_pred ccccchhccCCCCCcccCCCcccccccccccccchhhhhccceeeEEEecceEEEEEecCCCCCceEEEEEcCCCCCEEE
Confidence 99999999999999887776666677777889999999999999999999999999999999999999999999999999
Q ss_pred EeeeccCCCCCcccCCCCCCCCceeeecccccccCccccCCCcceeEEEecCccceeEEEEEeCCCcccccCCcceEEeC
Q 004353 318 HWGVCRDDSKNWEIPAEPYPPETIVFKNKALRTLLQPKEGGKGCSRLFTVDEEFAGFLFVLKLNENTWLKCMENDFYIPL 397 (759)
Q Consensus 318 HWgv~k~~~~~W~~pp~~~~p~~s~~~~~a~eTpf~~~~~~~~~~~~~~L~~~~~g~~FVL~~~~~~W~k~~g~dfyi~l 397 (759)
||||||++++||++||+++||+||+++++||||||+..+++.++++.|+||.+|.||+||||+++++||||+|+||||||
T Consensus 312 HWgV~k~~~~eW~~Pp~~~~P~~sv~~~kA~eT~~~~~~~~~~~~~~~~ld~~~~g~~FVLk~~~g~W~~~~G~DF~Ipl 391 (894)
T PLN02784 312 HWGVCKDGAKTWEIPPEPHPPETSLFKNKALQTMLQQKDDGNGSSGLFSLDGELEGLLFVLKLNEGTWLRCNGNDFYVPL 391 (894)
T ss_pred EeEeccCCCCcccCCCCCCCCCcceecccccccccccccCCCcceEEEecCCCeeEEEEEEECCCCchhhcCCccEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999769999999999999999
Q ss_pred CCCCCCCCcccccccccCCccccccccchhhhhhhHhhheeeeeecccccccccccchhhhhhhhHHhhhhhhhhhhccc
Q 004353 398 TSSSCLPAESVQEMLIPGKAEEATQEVSQTAYTAGIIKEIRNLVSDFSSDISRKTKSKEAQKSILLEIEKLAAEAYSIFR 477 (759)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~q~~~~~~~~~~~aViYqIf~ 477 (759)
..+++.+++.....-+ ++..+.+++++.++|+++||++||++++++++.+.++++.++.|..++++++++++..|.||+
T Consensus 392 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (894)
T PLN02784 392 LTSSSLPTQTEQGQSE-GKTAKTNKEVSKSAYTDGIIGEIRNLVIDISSEKGQKTKTKELQESILQEIEKLAAEAYSIFR 470 (894)
T ss_pred Cchhcccccccccccc-cccccccccccccccccchhhhhHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhhhhheeec
Confidence 9999887733333333 456788999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCccccccc-cCCCCCCCCCCCcccceeeecccccccCCCCCCHHHHHHhHHHHHhcCCCEEEECCCCCCCCCC
Q 004353 478 TTAPTFFEEAAVELE-ESKPPAKISPGTGTGFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESVSPE 556 (759)
Q Consensus 478 drF~ng~~s~~~~~~-~~~~p~~~~~g~~~~yev~~~~F~Wds~~~Gg~l~GI~ekLdYLk~LGvtaIwL~PIf~s~s~h 556 (759)
.......+....+.+ -.+||..++.+++.+|++++|+|+|+++.+|.++++|+++|+||++||||+|||+|++++.++|
T Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVmlQgF~Wds~~dg~w~~~I~ekldyL~~LG~taIWLpP~~~s~s~~ 550 (894)
T PLN02784 471 STIPTFSEESVLEAERIQKPPIKICSGTGSGFEILCQGFNWESHKSGRWYMELGEKAAELSSLGFTVVWLPPPTESVSPE 550 (894)
T ss_pred cCCCCcChhhhhcchhhcCCcccccccccCCceEEEEeEEcCcCCCCchHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCC
Confidence 987776665555444 3668888899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccCCccCCCCCCHHHHHHHHHHHHHcCCEEEeeeeeccccccccccCCCccccCCCCCCCCCcccCCCCCCCCCCC
Q 004353 557 GYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGN 636 (759)
Q Consensus 557 GYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIkVIlDvV~NH~~~~~~~~~~~w~~~~~~~~w~~~~~~~~~~~f~~~g~ 636 (759)
||+|.|||.+|++|||.+||++||++||++||+||+|+|+||++..|++.++.|+.|.+..+|++.....+.+.|.++++
T Consensus 551 GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDiViNH~ag~f~~~~g~~~~f~g~~dW~d~~i~~ddp~F~GrG~ 630 (894)
T PLN02784 551 GYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDAVLNHRCAHFQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGN 630 (894)
T ss_pred CcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEECcccccccccCCCCcccccCCeecCCCCcccCCCcccCCcCC
Confidence 99999999999999999999999999999999999999999999888777788999988889988877777788988888
Q ss_pred ccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCccEEEEeccCcccHHHHHHHHHhCCCcEEEEeecCCCCcccCcc
Q 004353 637 KSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYLEATEPYFAVGEYWDSLSYTYGEM 716 (759)
Q Consensus 637 ~~~~~~~~~lpdLn~~np~Vr~~i~d~l~~Wi~e~GVDGFRlD~ak~f~~~~~~~~~~~~p~~~lvGE~w~~~~y~~g~m 716 (759)
++++.+|.++||||++||+||++|++|++||++++||||||||+|+|||..|++++.++..+.|+|||+|+++.|.+|.|
T Consensus 631 ~~sgddf~~lPDLDh~npeVR~eL~~WlkWL~~e~G~DGfRLDaVKgf~~~Fvkeyv~a~kp~F~VGEyWd~~~~~~g~~ 710 (894)
T PLN02784 631 KSSGDNFHAAPNIDHSQDFVRKDLKEWLCWMRKEVGYDGWRLDFVRGFWGGYVKDYMEASEPYFAVGEYWDSLSYTYGEM 710 (894)
T ss_pred cCcccccCcCCcCCCCCHHHHHHHHHHHHHHHhccCCCEEEEeccCCCCHHHHHHHHhccCCcEEEEEeccccccccCcc
Confidence 88899999999999999999999999999999899999999999999999999999888777999999999988888999
Q ss_pred CcCchhhhHHHHHHHHhhcCCCCCCceeeehhhhhcccc
Q 004353 717 DHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSVSIS 755 (759)
Q Consensus 717 ~Y~~d~~~~~i~~yl~~~~~~~~~fDf~l~~~l~~A~~~ 755 (759)
+|+||++++.|.+|++.+++.+++|||+|++.|++|+.+
T Consensus 711 ~Ynqd~~rq~l~dwi~~tgg~~saFDfplk~~L~~A~~~ 749 (894)
T PLN02784 711 DYNQDAHRQRIVDWINATNGTAGAFDVTTKGILHSALER 749 (894)
T ss_pred ccCchhHHHHHHHHHHhCCCceeeechhHHHHHHHHHhc
Confidence 999999999999999999999999999999999999863
No 2
>PRK10785 maltodextrin glucosidase; Provisional
Probab=100.00 E-value=7.6e-47 Score=439.80 Aligned_cols=324 Identities=15% Similarity=0.154 Sum_probs=224.9
Q ss_pred eEEeCCCCCCCCCcccccccccCCccccccccchhhhhhhHhhheeeeeeccccccccc-ccchhhhhhhh--HHhhhhh
Q 004353 393 FYIPLTSSSCLPAESVQEMLIPGKAEEATQEVSQTAYTAGIIKEIRNLVSDFSSDISRK-TKSKEAQKSIL--LEIEKLA 469 (759)
Q Consensus 393 fyi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~~~~~~~~~-~~~~~~q~~~~--~~~~~~~ 469 (759)
-.++|.....+ +..+.|.+ ++.+........|+|.|..+-..+..+..+..... .+...+|.+.. ..+|-..
T Consensus 47 ~~~~m~~~~~~---~~~~~~~~--~~~~~~~~~~~~Y~F~l~~~~~~~~~~~~g~~~~~~~~~~~f~~~~~~~~P~W~~~ 121 (598)
T PRK10785 47 YLLPMEKQRSQ---PQVTAWRA--SLPLNSGQPRRRYSFKLLWHDRQRWFTPQGFSRRPPARLEQFAVDVPDQGPQWVAD 121 (598)
T ss_pred EEEEeEEeecC---CCceEEEE--EEEcCCCCceEEEEEEEEeCCEEEEEcCCceeeccCCCccceEeeCCCCCCchhhc
Confidence 36788776654 34556877 66665456788999998654444444443321111 12223444332 1223344
Q ss_pred hhhhhcccccCCCCCCccccccc-cC-----CCCCCCCCCCcccceeeecccccccCCCCCCHHHHHHhHHHHHhcCCCE
Q 004353 470 AEAYSIFRTTAPTFFEEAAVELE-ES-----KPPAKISPGTGTGFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSV 543 (759)
Q Consensus 470 aViYqIf~drF~ng~~s~~~~~~-~~-----~~p~~~~~g~~~~yev~~~~F~Wds~~~Gg~l~GI~ekLdYLk~LGvta 543 (759)
+||||||||||+||+++|+.... +. .+.....++....++.....|+ ||||+||+++||||++||||+
T Consensus 122 ~v~YqIfpDRF~ng~~~n~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~f~------GGDl~GI~~kLdYL~~LGv~~ 195 (598)
T PRK10785 122 QVFYQIFPDRFARSLPREAVQDHVYYHHAAGQEIILRDWDEPVTAQAGGSTFY------GGDLDGISEKLPYLKKLGVTA 195 (598)
T ss_pred CEEEEechhhhcCCCcccCccCCceeeccCCCcccccCcCCCccccccccccc------CcCHHHHHHHHHHHHHcCCCE
Confidence 99999999999999998765321 00 0000011222222222334555 999999999999999999999
Q ss_pred EEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCEEEeeeeecccccccc--ccCCCccccCCCCCCCC
Q 004353 544 IWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQ--NQNGVWNIFGGRLNWDD 621 (759)
Q Consensus 544 IwL~PIf~s~s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIkVIlDvV~NH~~~~~~--~~~~~w~~~~~~~~w~~ 621 (759)
|||+|||+++++|||++.||++|||+|||+++|++||++||++|||||||+|+||+|.++. +....- ..+ .+..
T Consensus 196 I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~V~NH~~~~~~~f~~~~~~--~~g--a~~~ 271 (598)
T PRK10785 196 LYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDGVFNHTGDSHPWFDRHNRG--TGG--ACHH 271 (598)
T ss_pred EEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEECCCcCCCCCHHHHHhhcc--ccc--cccC
Confidence 9999999999999999999999999999999999999999999999999999999998631 110000 000 0111
Q ss_pred Cccc-CCCCCCCCCCCccCCCCCCCCCCCCCCCHHHHHHHHH----HHHHHHHc-CCccEEEEeccCc------------
Q 004353 622 RAVV-ADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKE----WLCWLRNE-IGYDGWRLDFVRG------------ 683 (759)
Q Consensus 622 ~~~~-~~~~~f~~~g~~~~~~~~~~lpdLn~~np~Vr~~i~d----~l~~Wi~e-~GVDGFRlD~ak~------------ 683 (759)
...+ .++..|...+.+.+|.++..+|+||++||+|+++|++ ++++|+++ +||||||||+|++
T Consensus 272 ~~spy~dwf~~~~~~~~~~w~g~~~lPdLN~~np~v~~~l~~~~~~v~~~Wl~~~~giDG~RlDva~~v~~~~~~~~~~~ 351 (598)
T PRK10785 272 PDSPWRDWYSFSDDGRALDWLGYASLPKLDFQSEEVVNEIYRGEDSIVRHWLKAPYNIDGWRLDVVHMLGEGGGARNNLQ 351 (598)
T ss_pred CCCCcceeeEECCCCCcCCcCCCCcCccccCCCHHHHHHHHhhhhHHHHHhhcCCCCCcEEEEecHhHhccccCccccHH
Confidence 0001 1122233334455677788999999999999999996 79999976 8999999999974
Q ss_pred ccHHHHHHHHHhCCCcEEEEeecCCC-Ccc-----cCccCcCchhhhHHHHHHHHh
Q 004353 684 FWGGYVKDYLEATEPYFAVGEYWDSL-SYT-----YGEMDHNQDAHRQRIIDWINA 733 (759)
Q Consensus 684 f~~~~~~~~~~~~p~~~lvGE~w~~~-~y~-----~g~m~Y~~d~~~~~i~~yl~~ 733 (759)
||.++++.+++..|++++|||+|.+. .|+ .+.|||. .+...+..|+..
T Consensus 352 f~~~~~~~vk~~~pd~~ligE~~~~~~~~l~~~~~d~~mny~--~f~~~~~~~~~~ 405 (598)
T PRK10785 352 HVAGITQAAKEENPEAYVLGEHFGDARQWLQADVEDAAMNYR--GFAFPLRAFLAN 405 (598)
T ss_pred HHHHHHHHHHhhCCCeEEEEeccCChhhhccCccccccccch--hhhhHHHHHhhc
Confidence 67888888888889999999999763 344 3568884 455667777654
No 3
>PLN02361 alpha-amylase
Probab=100.00 E-value=7.6e-46 Score=410.42 Aligned_cols=244 Identities=49% Similarity=0.987 Sum_probs=208.3
Q ss_pred cceeeecccccccCCCCCCHHHHHHhHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHc
Q 004353 507 GFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDV 586 (759)
Q Consensus 507 ~yev~~~~F~Wds~~~Gg~l~GI~ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~ 586 (759)
+.++++|+|+|++.. +.++++|+++|+||++||||+|||+|++++.++|||+|.|||++|++|||.+||++||++||++
T Consensus 10 ~~~v~lQ~F~W~~~~-~~~w~~i~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~ 88 (401)
T PLN02361 10 GREILLQAFNWESHK-HDWWRNLEGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQY 88 (401)
T ss_pred CCcEEEEEEeccCCc-cHHHHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHc
Confidence 356899999999874 5689999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeeeeeccccccccccCCCccccCC-CCCCCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 004353 587 GMKILGDVVLNHRCAHYQNQNGVWNIFGG-RLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLC 665 (759)
Q Consensus 587 GIkVIlDvV~NH~~~~~~~~~~~w~~~~~-~~~w~~~~~~~~~~~f~~~g~~~~~~~~~~lpdLn~~np~Vr~~i~d~l~ 665 (759)
||+||+|+|+||++.......+.|..|.+ +.+|+...+..+. .+.+++..+.++.++||||++||.||++++++++
T Consensus 89 gi~vi~D~V~NH~~g~~~~~~~~y~~~~g~~~~wd~~~~~~~~---~g~~~~~~~~~~~~lpDLd~~np~Vr~~l~~~~~ 165 (401)
T PLN02361 89 NVRAMADIVINHRVGTTQGHGGMYNRYDGIPLPWDEHAVTSCT---GGLGNRSTGDNFNGVPNIDHTQHFVRKDIIGWLI 165 (401)
T ss_pred CCEEEEEEccccccCCCCCCCCCcccCCCCcCCCCcccccccc---CCCCCccCCCCCccCCccCCCCHHHHHHHHHHHH
Confidence 99999999999997654444444554544 2345433221111 1223445566788999999999999999999999
Q ss_pred HHHHcCCccEEEEeccCcccHHHHHHHHHhCCCcEEEEeecCCCCcc--cCccCcCchhhhHHHHHHHHhhcCCCCCCce
Q 004353 666 WLRNEIGYDGWRLDFVRGFWGGYVKDYLEATEPYFAVGEYWDSLSYT--YGEMDHNQDAHRQRIIDWINAASGTAGAFDV 743 (759)
Q Consensus 666 ~Wi~e~GVDGFRlD~ak~f~~~~~~~~~~~~p~~~lvGE~w~~~~y~--~g~m~Y~~d~~~~~i~~yl~~~~~~~~~fDf 743 (759)
||++++||||||+|+|+|+..+|++++.++..+.|+|||+|++..+. .|.|+|+++.+++.|.+|++.+++.+++|||
T Consensus 166 wl~~~~GiDGfRlDavk~~~~~f~~~~~~~~~p~f~VGE~w~~~~~~~~d~~~~y~~~~~~~~l~~~~~~~~~~~~~fDF 245 (401)
T PLN02361 166 WLRNDVGFQDFRFDFAKGYSAKFVKEYIEAAKPLFSVGEYWDSCNYSGPDYRLDYNQDSHRQRIVNWIDGTGGLSAAFDF 245 (401)
T ss_pred HHHhcCCCCEEEEeccccCCHHHHHHHHHhhCCeEEEEEEecCCCcCCcccccchhhhhHHHHHHHHHHhcCCcceeecH
Confidence 88877999999999999999999999998877799999999986543 4569999999999999999998888999999
Q ss_pred eeehhhhhccc
Q 004353 744 TTKGILHSVSI 754 (759)
Q Consensus 744 ~l~~~l~~A~~ 754 (759)
+|++.|++|+.
T Consensus 246 ~l~~~l~~a~~ 256 (401)
T PLN02361 246 TTKGILQEAVK 256 (401)
T ss_pred HHHHHHHHHHh
Confidence 99999999884
No 4
>PLN00196 alpha-amylase; Provisional
Probab=100.00 E-value=2.5e-45 Score=410.22 Aligned_cols=248 Identities=43% Similarity=0.922 Sum_probs=207.1
Q ss_pred cceeeeccccccc-CCCCCCHHHHHHhHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccC-CCCCCHHHHHHHHHHHH
Q 004353 507 GFEILCQGFNWES-HKSGRWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLS-SRYGNIDELKDVVNKFH 584 (759)
Q Consensus 507 ~yev~~~~F~Wds-~~~Gg~l~GI~ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Id-p~~GT~edfk~LV~aaH 584 (759)
..++++|+|+|++ +..||++++|+++|+||++||||+|||+|++++.++|||+|.|||++| ++|||.+||++||++||
T Consensus 23 ~~~v~~Q~F~W~~~~~~gg~~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH 102 (428)
T PLN00196 23 AGQVLFQGFNWESWKQNGGWYNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFH 102 (428)
T ss_pred CCCEEEEeeccCCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHH
Confidence 3568999999998 667899999999999999999999999999999999999999999999 59999999999999999
Q ss_pred HcCCEEEeeeeeccccccccccCCCccccCC-----CCCCCCCcccCCCCCC-CCCCCccCCCCCCCCCCCCCCCHHHHH
Q 004353 585 DVGMKILGDVVLNHRCAHYQNQNGVWNIFGG-----RLNWDDRAVVADDPHF-QGRGNKSSGDNFHAAPNIDHSQDFVRK 658 (759)
Q Consensus 585 ~~GIkVIlDvV~NH~~~~~~~~~~~w~~~~~-----~~~w~~~~~~~~~~~f-~~~g~~~~~~~~~~lpdLn~~np~Vr~ 658 (759)
++||+||+|+|+||++.++.+..+.|..+.+ +.+|.......+...| ++.+++.++.++.++||||++||+|++
T Consensus 103 ~~GIkVilDvV~NH~~~~~~~~~~~y~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~lpDLn~~np~V~~ 182 (428)
T PLN00196 103 GKGVQVIADIVINHRTAEHKDGRGIYCLFEGGTPDSRLDWGPHMICRDDTQYSDGTGNLDTGADFAAAPDIDHLNKRVQR 182 (428)
T ss_pred HCCCEEEEEECccCcccccccCCCceEECCCCCCCCccccccccCCCCcccccCCCCceeCCCCCCCCCccCCCCHHHHH
Confidence 9999999999999999876544444544432 2344322222222222 234456677888999999999999999
Q ss_pred HHHHHHHHHHHcCCccEEEEeccCcccHHHHHHHHHhCCCcEEEEeecCCCCcc-cCccCcCchhhhHHHHHHHHhhcCC
Q 004353 659 DIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYLEATEPYFAVGEYWDSLSYT-YGEMDHNQDAHRQRIIDWINAASGT 737 (759)
Q Consensus 659 ~i~d~l~~Wi~e~GVDGFRlD~ak~f~~~~~~~~~~~~p~~~lvGE~w~~~~y~-~g~m~Y~~d~~~~~i~~yl~~~~~~ 737 (759)
+|+++++||++++||||||+|+|+||+.+|++.+.+...+.|+|||+|++.+|. .+..+|+++.+++.+.+|++.+++.
T Consensus 183 ~l~~~~~wl~~~~GiDG~RlD~ak~~~~~f~~~~v~~~~p~f~VGE~W~~~~~~~~~~~~~~~~~~r~~l~~~l~~~g~~ 262 (428)
T PLN00196 183 ELIGWLLWLKSDIGFDAWRLDFAKGYSAEVAKVYIDGTEPSFAVAEIWTSMAYGGDGKPEYDQNAHRQELVNWVDRVGGA 262 (428)
T ss_pred HHHHHHHHHhhCCCCCEEEeehhhhCCHHHHHHHHHccCCcEEEEEEeccccccccCCccccchhhHHHHHHHHHhcCCc
Confidence 999999999888999999999999999999999877666699999999987764 5678888888899999999988764
Q ss_pred C---CCCceeeehhhhhccc
Q 004353 738 A---GAFDVTTKGILHSVSI 754 (759)
Q Consensus 738 ~---~~fDf~l~~~l~~A~~ 754 (759)
+ ++|||+++..+.++..
T Consensus 263 ~~~~~~fDF~~~~~~~~~~~ 282 (428)
T PLN00196 263 ASPATVFDFTTKGILNVAVE 282 (428)
T ss_pred cCcceeecccchHHHHHHhc
Confidence 4 4999999987665543
No 5
>PRK09505 malS alpha-amylase; Reviewed
Probab=100.00 E-value=5e-41 Score=392.46 Aligned_cols=219 Identities=23% Similarity=0.378 Sum_probs=155.3
Q ss_pred hhhhhcccccCCCCCCccccccccCCCCCCCCCCCcccceeeecccccccCCCCCCHHHHHHhHHHHHhcCCCEEEECCC
Q 004353 470 AEAYSIFRTTAPTFFEEAAVELEESKPPAKISPGTGTGFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPP 549 (759)
Q Consensus 470 aViYqIf~drF~ng~~s~~~~~~~~~~p~~~~~g~~~~yev~~~~F~Wds~~~Gg~l~GI~ekLdYLk~LGvtaIwL~PI 549 (759)
+||||||||||+||+++|+..-+ . .+++. .....|+ ||+|+||+++|+||++||||+|||+||
T Consensus 190 aviYqI~~DRF~nGd~~Nd~~~g--~------~~d~~---~~~~~f~------GGdl~Gi~~kLdyl~~LGv~aIwlsPi 252 (683)
T PRK09505 190 ATVYFVLTDRFENGDPSNDHSYG--R------HKDGM---QEIGTFH------GGDLRGLTEKLDYLQQLGVNALWISSP 252 (683)
T ss_pred CcEEEEehhhhcCCCcccccccC--c------CCCCc---cccCccc------CCCHHHHHHhhHHHHHcCCCEEEeCcc
Confidence 88999999999999998864300 0 01110 1134566 999999999999999999999999999
Q ss_pred CCCC---------------CCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCEEEeeeeeccccccc---------cc
Q 004353 550 TESV---------------SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHY---------QN 605 (759)
Q Consensus 550 f~s~---------------s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIkVIlDvV~NH~~~~~---------~~ 605 (759)
+++. ++|||++.||+.|||+|||++||++||++||++||+||||+|+||++... ..
T Consensus 253 ~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD~V~NH~~~~~~~d~~~~~f~~ 332 (683)
T PRK09505 253 LEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFDVVMNHTGYATLADMQEFQFGA 332 (683)
T ss_pred ccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEEECcCCCcccccccccccchhh
Confidence 9862 67999999999999999999999999999999999999999999999521 10
Q ss_pred -----------cCCCccccC--CCCCCCCCcccCCCCCCCCC----------------CCcc------CCCCCCCCCCCC
Q 004353 606 -----------QNGVWNIFG--GRLNWDDRAVVADDPHFQGR----------------GNKS------SGDNFHAAPNID 650 (759)
Q Consensus 606 -----------~~~~w~~~~--~~~~w~~~~~~~~~~~f~~~----------------g~~~------~~~~~~~lpdLn 650 (759)
....|+.|. ...+|.+.. +...|... +.+. ....+..|||||
T Consensus 333 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~---~~~~~~~~~~~~~wwg~~w~~~~~~~~~~~~~~~~~~~l~~LPdl~ 409 (683)
T PRK09505 333 LYLSGDENKKTLGERWSDWQPAAGQNWHSFN---DYINFSDSTAWDKWWGKDWIRTDIGDYDNPGFDDLTMSLAFLPDIK 409 (683)
T ss_pred hhhhccccccccCcccccccccccccccccc---cccccCCccccccccccccccccccccccccccccccccccCCccc
Confidence 001111110 011121110 00001000 0000 011245788888
Q ss_pred CC-----------------------CHHHHHHHHHHHHHHHHcCCccEEEEeccCcccHHHHHHHH-----------HhC
Q 004353 651 HS-----------------------QDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYL-----------EAT 696 (759)
Q Consensus 651 ~~-----------------------np~Vr~~i~d~l~~Wi~e~GVDGFRlD~ak~f~~~~~~~~~-----------~~~ 696 (759)
++ ||.|+++|++++++|++++||||||+|+|+|+..+|+++++ +.+
T Consensus 410 te~~~~~~lp~f~~~~p~~~~~~~~n~~Vr~yL~~~ik~Wv~e~GIDGfRlDaakhV~~~FW~~~~~~~~~~l~~~k~~~ 489 (683)
T PRK09505 410 TESTQASGLPVFYANKPDTRAKAIDGYTPRDYLTHWLSQWVRDYGIDGFRVDTAKHVELPAWQQLKQEASAALAEWKKAN 489 (683)
T ss_pred ccCccccccchhhhcCcccccccccCHHHHHHHHHHHHHHHHhcCCCEEEEechHhCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 76 45999999999999998899999999999976555444332 223
Q ss_pred C-------CcEEEEeecCC
Q 004353 697 E-------PYFAVGEYWDS 708 (759)
Q Consensus 697 p-------~~~lvGE~w~~ 708 (759)
+ ++|++||+|..
T Consensus 490 ~d~~~~~~~~~~vGEvw~~ 508 (683)
T PRK09505 490 PDKALDDAPFWMTGEAWGH 508 (683)
T ss_pred cccccccCCeEEEEEecCC
Confidence 3 58999999975
No 6
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=100.00 E-value=5.8e-40 Score=373.74 Aligned_cols=233 Identities=29% Similarity=0.570 Sum_probs=172.8
Q ss_pred ceeeecccccccCCCCCCHHHHHHhHHHHHhcCCCEEEECCCCCCCC---CCCCCcccCC---------ccCCCCCCHHH
Q 004353 508 FEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESVS---PEGYMPRDLY---------NLSSRYGNIDE 575 (759)
Q Consensus 508 yev~~~~F~Wds~~~Gg~l~GI~ekLdYLk~LGvtaIwL~PIf~s~s---~hGYdp~Dy~---------~Idp~~GT~ed 575 (759)
.++++|+|+|+++.+|.+++||+++||||++||||+|||+||+++.+ +|||++.||| .|||+|||++|
T Consensus 3 ~~~~~q~f~w~~~~~~~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~d 82 (479)
T PRK09441 3 NGTMMQYFEWYLPNDGKLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEE 82 (479)
T ss_pred CceEEEEEEeccCCCccHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHH
Confidence 35799999999998888899999999999999999999999999875 5999999999 78999999999
Q ss_pred HHHHHHHHHHcCCEEEeeeeecccccccc----c-----cC------------CCccccCCC----------CCCCCCcc
Q 004353 576 LKDVVNKFHDVGMKILGDVVLNHRCAHYQ----N-----QN------------GVWNIFGGR----------LNWDDRAV 624 (759)
Q Consensus 576 fk~LV~aaH~~GIkVIlDvV~NH~~~~~~----~-----~~------------~~w~~~~~~----------~~w~~~~~ 624 (759)
||+||++||++||+||+|+|+|||+.... . ++ ..|..+..+ .+|.....
T Consensus 83 l~~Li~~~H~~Gi~vi~D~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (479)
T PRK09441 83 LLNAIDALHENGIKVYADVVLNHKAGADEKETFRVVEVDPDDRTQIISEPYEIEGWTRFTFPGRGGKYSDFKWHWYHFSG 162 (479)
T ss_pred HHHHHHHHHHCCCEEEEEECcccccCCCcceeeeeeeeCccccccccCCceeecccccccCCCCCCcCCcceeCCcCCCC
Confidence 99999999999999999999999996311 0 00 011111000 00000000
Q ss_pred -cCC-----CCCCCCCCCccCC----------CCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCccEEEEeccCcccHHH
Q 004353 625 -VAD-----DPHFQGRGNKSSG----------DNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGY 688 (759)
Q Consensus 625 -~~~-----~~~f~~~g~~~~~----------~~~~~lpdLn~~np~Vr~~i~d~l~~Wi~e~GVDGFRlD~ak~f~~~~ 688 (759)
... ...|.....+..| ..+..+||||++||+|+++|+++++||++++||||||+|+|+|+..+|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~lpDLn~~np~V~~~l~~~~~~w~~~~giDGfRlDavk~v~~~f 242 (479)
T PRK09441 163 TDYDENPDESGIFKIVGDGKGWDDQVDDENGNFDYLMGADIDFRHPEVREELKYWAKWYMETTGFDGFRLDAVKHIDAWF 242 (479)
T ss_pred cccccccCcCceEEecCCCCCCccccccccCCcccccccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEhhhcCCCHHH
Confidence 000 0000000000111 134569999999999999999999999977999999999999876666
Q ss_pred HHHHHHh----C-CCcEEEEeecCCCCcccCccCcCchhhhHHHHHHHHhhcCCCCCCceeeehhhhhccc
Q 004353 689 VKDYLEA----T-EPYFAVGEYWDSLSYTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSVSI 754 (759)
Q Consensus 689 ~~~~~~~----~-p~~~lvGE~w~~~~y~~g~m~Y~~d~~~~~i~~yl~~~~~~~~~fDf~l~~~l~~A~~ 754 (759)
+++++++ . |++|++||+|.+. .+.+..|+...+...++|||++...++.|..
T Consensus 243 ~~~~~~~~~~~~~~~~~~vGE~~~~~--------------~~~~~~y~~~~~~~~~~~Df~~~~~l~~~~~ 299 (479)
T PRK09441 243 IKEWIEHVREVAGKDLFIVGEYWSHD--------------VDKLQDYLEQVEGKTDLFDVPLHYNFHEASK 299 (479)
T ss_pred HHHHHHHHHHhcCCCeEEEEeecCCC--------------hHHHHHHHHhcCCCceEecHHHHHHHHHHHh
Confidence 6555544 3 5799999999763 3467788876654567899998888877654
No 7
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=100.00 E-value=5.4e-38 Score=362.24 Aligned_cols=204 Identities=21% Similarity=0.272 Sum_probs=155.3
Q ss_pred hhhhhhhcccccCCCCCCccccccccCCCCCCCCCCCcccceeeecccccccCCCCCCHHHHHHhHHHHHhcCCCEEEEC
Q 004353 468 LAAEAYSIFRTTAPTFFEEAAVELEESKPPAKISPGTGTGFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLP 547 (759)
Q Consensus 468 ~~aViYqIf~drF~ng~~s~~~~~~~~~~p~~~~~g~~~~yev~~~~F~Wds~~~Gg~l~GI~ekLdYLk~LGvtaIwL~ 547 (759)
..+|||||||++|.+++.+ .+|+|+||+++||||++||||+|||+
T Consensus 4 ~~~viYqi~~~~f~d~~~~-----------------------------------~~Gdl~gi~~~Ldyl~~LGv~~i~L~ 48 (539)
T TIGR02456 4 KDAVFYEVHVRSFFDSNGD-----------------------------------GIGDFPGLTSKLDYLKWLGVDALWLL 48 (539)
T ss_pred ccceEEEEehhHhhcCCCC-----------------------------------CccCHHHHHHhHHHHHHCCCCEEEEC
Confidence 3478999999999865421 16899999999999999999999999
Q ss_pred CCCCCCC-CCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCEEEeeeeeccccccc---cc-------cCCCccccCCC
Q 004353 548 PPTESVS-PEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHY---QN-------QNGVWNIFGGR 616 (759)
Q Consensus 548 PIf~s~s-~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIkVIlDvV~NH~~~~~---~~-------~~~~w~~~~~~ 616 (759)
||+++.+ +|||++.||++|||+|||+++|++||++||++||+||||+|+||++.++ ++ +...|+.+.+.
T Consensus 49 Pi~~~~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~V~NH~s~~~~~f~~~~~~~~~~~~~~~~~~~~ 128 (539)
T TIGR02456 49 PFFQSPLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDLVLNHTSDQHPWFQEARSNPDGPYRDFYVWSDT 128 (539)
T ss_pred CCcCCCCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEEeccCcCCCCCHHHHHHhhCCCCCCCceEEecCC
Confidence 9999986 6999999999999999999999999999999999999999999999863 11 12334433211
Q ss_pred C-CCCCCcccC------CCCCCCCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCccEEEEeccCc------
Q 004353 617 L-NWDDRAVVA------DDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRG------ 683 (759)
Q Consensus 617 ~-~w~~~~~~~------~~~~f~~~g~~~~~~~~~~lpdLn~~np~Vr~~i~d~l~~Wi~e~GVDGFRlD~ak~------ 683 (759)
. .+....... .+.+....++++....+..+|+||++||+||++|++++++|+ ++||||||||+|++
T Consensus 129 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~f~~~~pdln~~np~vr~~l~~~~~~w~-~~GvDGfRlDav~~~~~~~~ 207 (539)
T TIGR02456 129 DEKYKDTRIIFVDTEKSNWTFDPVAKQYYWHRFFSHQPDLNYDNPAVHDAVHDVMRFWL-DLGVDGFRLDAVPYLYEREG 207 (539)
T ss_pred CcccccccccccccCCCCccccCCcCeeEEecccCCCCccCCCCHHHHHHHHHHHHHHH-HcCCCEEEEecHHhhhccCC
Confidence 0 000000000 000000111222222457899999999999999999999999 69999999999863
Q ss_pred -----------ccHHHHHHHHHhCCCcEEEEeecC
Q 004353 684 -----------FWGGYVKDYLEATEPYFAVGEYWD 707 (759)
Q Consensus 684 -----------f~~~~~~~~~~~~p~~~lvGE~w~ 707 (759)
||.++++.+++..|+++++||+|.
T Consensus 208 ~~~~~~p~~~~f~~~~~~~v~~~~p~~~~iaE~~~ 242 (539)
T TIGR02456 208 TSCENLPETHEFLKRLRKMVDREYPGRMLLAEANQ 242 (539)
T ss_pred CccCCCchHHHHHHHHHHHHHHhCCCeEEEEEeCC
Confidence 667777777777899999999864
No 8
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=100.00 E-value=6.9e-37 Score=353.01 Aligned_cols=203 Identities=21% Similarity=0.333 Sum_probs=152.5
Q ss_pred hhhhhcccccCCCCCCccccccccCCCCCCCCCCCcccceeeecccccccCCCCCCHHHHHHhHHHHHhcCCCEEEECCC
Q 004353 470 AEAYSIFRTTAPTFFEEAAVELEESKPPAKISPGTGTGFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPP 549 (759)
Q Consensus 470 aViYqIf~drF~ng~~s~~~~~~~~~~p~~~~~g~~~~yev~~~~F~Wds~~~Gg~l~GI~ekLdYLk~LGvtaIwL~PI 549 (759)
+|||||+||+|.+++.+ .+|+|+||+++|+||++|||++|||+||
T Consensus 5 ~v~Y~i~~~~f~~~~~~-----------------------------------~~G~~~gi~~~l~yl~~lG~~~i~l~Pi 49 (543)
T TIGR02403 5 KVIYQIYPKSFYDSTGD-----------------------------------GTGDLRGIIEKLDYLKKLGVDYIWLNPF 49 (543)
T ss_pred CEEEEEEhHHHhcCCCC-----------------------------------CccCHHHHHHhHHHHHHcCCCEEEECCc
Confidence 68899999999754321 1479999999999999999999999999
Q ss_pred CCCCCC-CCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCEEEeeeeeccccccc---cc------cCCCccccCCC---
Q 004353 550 TESVSP-EGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHY---QN------QNGVWNIFGGR--- 616 (759)
Q Consensus 550 f~s~s~-hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIkVIlDvV~NH~~~~~---~~------~~~~w~~~~~~--- 616 (759)
+++++. +||++.||+.|||+|||.++|++||++||++||+||+|+|+||++.++ +. +...|+.+...
T Consensus 50 ~~~~~~~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~v~NH~~~~~~~f~~~~~~~~~y~~~y~~~~~~~~ 129 (543)
T TIGR02403 50 YVSPQKDNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDMVFNHTSTEHEWFKKALAGDSPYRDFYIWRDPKGK 129 (543)
T ss_pred ccCCCCCCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEECccccccchHHHHHhhcCCCcccCceEecCCCCC
Confidence 998865 799999999999999999999999999999999999999999999863 11 12334433321
Q ss_pred --CCCCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCccEEEEeccCccc---------
Q 004353 617 --LNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFW--------- 685 (759)
Q Consensus 617 --~~w~~~~~~~~~~~f~~~g~~~~~~~~~~lpdLn~~np~Vr~~i~d~l~~Wi~e~GVDGFRlD~ak~f~--------- 685 (759)
.+|.+......+......+.++.......+||||++||+|+++|.++++||+ +.||||||||+|+++.
T Consensus 130 ~~~~~~~~~~~~~w~~~~~~~~~y~~~f~~~~pdln~~np~v~~~i~~~~~~W~-~~giDGfRlDa~~~i~~~~~~~~~~ 208 (543)
T TIGR02403 130 PPTNWQSKFGGSAWEYFGDTGQYYLHLFDKTQADLNWENPEVREELKDVVNFWR-DKGVDGFRLDVINLISKDQFFEDDE 208 (543)
T ss_pred CCCcccccCCCcCccccCCCCceEEeccCCcCCccCCCCHHHHHHHHHHHHHHH-HcCCCEEEEeeehhhccCcccCCCC
Confidence 1121100000011111122233333446799999999999999999999999 6899999999998653
Q ss_pred --------------HHHHHHHHHh---CCCcEEEEeecCC
Q 004353 686 --------------GGYVKDYLEA---TEPYFAVGEYWDS 708 (759)
Q Consensus 686 --------------~~~~~~~~~~---~p~~~lvGE~w~~ 708 (759)
.+|++++++. .+++|+|||+|..
T Consensus 209 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~lvgE~~~~ 248 (543)
T TIGR02403 209 IGDGRRFYTDGPRVHEYLQEMNQEVFGDNDSVTVGEMSST 248 (543)
T ss_pred CCCCccccCCChHHHHHHHHHHHHhhccCCeEEEEEeCCC
Confidence 2355555432 6789999999964
No 9
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=100.00 E-value=1.8e-36 Score=349.57 Aligned_cols=202 Identities=19% Similarity=0.289 Sum_probs=153.0
Q ss_pred hhhhhhhcccccCCCCCCccccccccCCCCCCCCCCCcccceeeecccccccCCCCCCHHHHHHhHHHHHhcCCCEEEEC
Q 004353 468 LAAEAYSIFRTTAPTFFEEAAVELEESKPPAKISPGTGTGFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLP 547 (759)
Q Consensus 468 ~~aViYqIf~drF~ng~~s~~~~~~~~~~p~~~~~g~~~~yev~~~~F~Wds~~~Gg~l~GI~ekLdYLk~LGvtaIwL~ 547 (759)
..+||||||||||.+++.+ .+|+|+||+++|+||++|||++|||+
T Consensus 9 ~~~v~Yqi~~~~f~d~~~~-----------------------------------~~Gdl~gi~~~ldyl~~lGv~~i~l~ 53 (551)
T PRK10933 9 QNGVIYQIYPKSFQDTTGS-----------------------------------GTGDLRGVTQRLDYLQKLGVDAIWLT 53 (551)
T ss_pred hcCeEEEEEchHhhcCCCC-----------------------------------CCcCHHHHHHhhHHHHhCCCCEEEEC
Confidence 4479999999999855411 15899999999999999999999999
Q ss_pred CCCCCCC-CCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCEEEeeeeeccccccc---cc------cCCCccccCCCC
Q 004353 548 PPTESVS-PEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHY---QN------QNGVWNIFGGRL 617 (759)
Q Consensus 548 PIf~s~s-~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIkVIlDvV~NH~~~~~---~~------~~~~w~~~~~~~ 617 (759)
||++++. +|||++.||+.|||+|||.+||++||++||++||+||+|+|+||++.++ ++ +...|+.+.+..
T Consensus 54 P~~~~~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~V~NH~s~~~~wf~~~~~~~~~y~d~y~~~~~~ 133 (551)
T PRK10933 54 PFYVSPQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDMVFNHTSTQHAWFREALNKESPYRQFYIWRDGE 133 (551)
T ss_pred CCCCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCccCchhHHHhhcCCCCCCcCceEecCCC
Confidence 9998876 6999999999999999999999999999999999999999999999863 21 123344332210
Q ss_pred CCCCCcccCCC-CCCCC--------CCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCccEEEEeccCcccH--
Q 004353 618 NWDDRAVVADD-PHFQG--------RGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWG-- 686 (759)
Q Consensus 618 ~w~~~~~~~~~-~~f~~--------~g~~~~~~~~~~lpdLn~~np~Vr~~i~d~l~~Wi~e~GVDGFRlD~ak~f~~-- 686 (759)
+ ...+... ..|.+ .+.++.......+||||++||+|+++|++++++|+ ++||||||||+|+++..
T Consensus 134 ~---~~~~~~~~~~~~~~~w~~~~~~~~~y~~~f~~~~pdLn~~np~V~~~l~~~~~~W~-~~GvDGfRlDa~~~i~~~~ 209 (551)
T PRK10933 134 P---ETPPNNWRSKFGGSAWRWHAESEQYYLHLFAPEQADLNWENPAVRAELKKVCEFWA-DRGVDGLRLDVVNLISKDQ 209 (551)
T ss_pred C---CCCCCcccccCCCccccccCCCCceEeecccccCCccCCCCHHHHHHHHHHHHHHH-HCCCcEEEEcchhhcCcCC
Confidence 0 0000000 01111 11112222235799999999999999999999999 79999999999986542
Q ss_pred ---------------------HHHHHHHHh---CCCcEEEEeecCC
Q 004353 687 ---------------------GYVKDYLEA---TEPYFAVGEYWDS 708 (759)
Q Consensus 687 ---------------------~~~~~~~~~---~p~~~lvGE~w~~ 708 (759)
+|++++++. .+++++|||+|..
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vgE~~~~ 255 (551)
T PRK10933 210 DFPDDLDGDGRRFYTDGPRAHEFLQEMNRDVFTPRGLMTVGEMSST 255 (551)
T ss_pred CCCCCcccccccccCCChHHHHHHHHHHHHhhcccCcEEEEeecCC
Confidence 567777653 2458999999963
No 10
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=100.00 E-value=1.3e-36 Score=320.98 Aligned_cols=182 Identities=25% Similarity=0.443 Sum_probs=140.1
Q ss_pred CCHHHHHHhHHHHHhcCCCEEEECCCCCCC-CCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCEEEeeeeecccccc
Q 004353 524 RWYMELKEKATELSSLGFSVIWLPPPTESV-SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAH 602 (759)
Q Consensus 524 g~l~GI~ekLdYLk~LGvtaIwL~PIf~s~-s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIkVIlDvV~NH~~~~ 602 (759)
|||+||+++||||++|||++|||+||++++ ++|||+|.||++|||+|||++||++||++||++||+||+|+|+||++..
T Consensus 1 Gd~~gi~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V~NH~~~~ 80 (316)
T PF00128_consen 1 GDFRGIIDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVVPNHTSDD 80 (316)
T ss_dssp SSHHHHHHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEETSEEETT
T ss_pred CCHHHHHHhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEeeeccccccc
Confidence 689999999999999999999999999987 8899999999999999999999999999999999999999999999987
Q ss_pred ccc----------cCCCccccCCC-----CCCCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 004353 603 YQN----------QNGVWNIFGGR-----LNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWL 667 (759)
Q Consensus 603 ~~~----------~~~~w~~~~~~-----~~w~~~~~~~~~~~f~~~g~~~~~~~~~~lpdLn~~np~Vr~~i~d~l~~W 667 (759)
+.- ....|+.+... .+|.. ......+...........+..+|+||++||+||++|++++++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~i~~~~~~w 157 (316)
T PF00128_consen 81 HPWFQDSLNYFDNPYSDYYYWRDGEGSPPGNWYS---YFGGSNWEYDDWGDEYQFWSDLPDLNYENPEVREYIIDVLKFW 157 (316)
T ss_dssp SHHHHHHHTHTTSTTGTTBEEESBTSTTSSTBBC---STTTSSEESCHHTHCHSSSTTSEEBETTSHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccceeeccccccccccccc---ccccccccccccccccccccccchhhhhhhhhhhhhcccccch
Confidence 320 12223222110 00100 0000011100000012467889999999999999999999999
Q ss_pred HHcCCccEEEEeccCcccHHHHHHHHH----hCCCcEEEEeecCCC
Q 004353 668 RNEIGYDGWRLDFVRGFWGGYVKDYLE----ATEPYFAVGEYWDSL 709 (759)
Q Consensus 668 i~e~GVDGFRlD~ak~f~~~~~~~~~~----~~p~~~lvGE~w~~~ 709 (759)
+ ++||||||||+|+++..++++.+++ ..|+++++||+|...
T Consensus 158 ~-~~giDGfR~D~~~~~~~~~~~~~~~~~~~~~~~~~~i~E~~~~~ 202 (316)
T PF00128_consen 158 I-EEGIDGFRLDAAKHIPKEFWKEFRDEVKEEKPDFFLIGEVWGGD 202 (316)
T ss_dssp H-HTTESEEEETTGGGSSHHHHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred h-hceEeEEEEccccccchhhHHHHhhhhhhhccccceeeeeccCC
Confidence 9 6789999999999876666655544 458899999999874
No 11
>PLN02784 alpha-amylase
Probab=100.00 E-value=5.4e-35 Score=340.52 Aligned_cols=163 Identities=27% Similarity=0.496 Sum_probs=147.1
Q ss_pred cccccccceecccCCCCCCCCCCCC-CCCC--CCCCcceeeeeeeeeeeeeeCCeEEEEEEecCCCCceEEEEEecCCCc
Q 004353 47 CSFKKLQKITVSSSTSTSTSPATST-DTTP--VRPGDVFFKETFPLKRTHAVEGKMFVRLQKGKDEKNWQLSVGCNIPGK 123 (759)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~e~~~~~~~~~~~~~~~v~v~~~~~~~~~~v~~~td~~~~ 123 (759)
..|+|+|||++|+|+++++.++.++ +.++ ..++.++|||++||.|++.|+|+|+|+|++|++++|++|+|+||+||+
T Consensus 229 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~v~v~~~~~~~k~~v~v~td~~~~ 308 (894)
T PLN02784 229 GALGQLSNILLKDEGSPSKEQDKSSSELDSAAERKGLKGFYEEMPIVKRVAVDNSVTVTVRKCPETAKNLVYLETDLPGD 308 (894)
T ss_pred CccccccchhccCCCCCcccCCCcccccccccccccchhhhhccceeeEEEecceEEEEEecCCCCCceEEEEEcCCCCC
Confidence 5679999999999999999888665 4444 889999999999999999999999999999999999999999999999
Q ss_pred eEEEeeeeccCCCCCCccCCCCCCCCCCccccccceeccccccccCCCceeEEEEeecCCCCceeeEEEEEeCCcccccc
Q 004353 124 WILHWGVSFVGDNGSEWDQPPKKMRPPGSVSIKDYAIETPLKKLAEGDVFDQVNIDFDTRSDIAAINFVLKDEETGAWYQ 203 (759)
Q Consensus 124 ~vLHWgv~~~~~~~~eW~~Pp~~~~P~gt~~~~~~A~eT~f~~~~~~~~~~~~~i~l~~d~~~~~i~FVlk~~~~~~W~k 203 (759)
||||||| |++..+||++||++++|+||+ +++|||||||+++++|.. ..+.|++|+++.||+||||++ +|+|||
T Consensus 309 vvlHWgV--~k~~~~eW~~Pp~~~~P~~sv-~~~kA~eT~~~~~~~~~~---~~~~~~ld~~~~g~~FVLk~~-~g~W~~ 381 (894)
T PLN02784 309 VVVHWGV--CKDGAKTWEIPPEPHPPETSL-FKNKALQTMLQQKDDGNG---SSGLFSLDGELEGLLFVLKLN-EGTWLR 381 (894)
T ss_pred EEEEeEe--ccCCCCcccCCCCCCCCCcce-ecccccccccccccCCCc---ceEEEecCCCeeEEEEEEECC-CCchhh
Confidence 9999999 888789999999999999998 599999999999766533 444577799999999999998 668999
Q ss_pred cCCcceeeecccc
Q 004353 204 HRGRDFKVPLVDY 216 (759)
Q Consensus 204 ~~G~df~v~l~~~ 216 (759)
|+|+||||||+.+
T Consensus 382 ~~G~DF~Ipl~~~ 394 (894)
T PLN02784 382 CNGNDFYVPLLTS 394 (894)
T ss_pred cCCccEEEeCCch
Confidence 9999999999844
No 12
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=100.00 E-value=1.4e-34 Score=340.22 Aligned_cols=198 Identities=22% Similarity=0.342 Sum_probs=150.3
Q ss_pred CCCHHHHHHh--HHHHHhcCCCEEEECCCCCCC-----------CCCCCCcccCCccCCCC---CCHHHHHHHHHHHHHc
Q 004353 523 GRWYMELKEK--ATELSSLGFSVIWLPPPTESV-----------SPEGYMPRDLYNLSSRY---GNIDELKDVVNKFHDV 586 (759)
Q Consensus 523 Gg~l~GI~ek--LdYLk~LGvtaIwL~PIf~s~-----------s~hGYdp~Dy~~Idp~~---GT~edfk~LV~aaH~~ 586 (759)
.|+|+||+++ |+||++||||+|||+||+++. .+|||+|.|||+|||+| |+.+|||+||++||++
T Consensus 178 ~Gtf~Gi~~~~~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~ 257 (688)
T TIGR02100 178 RGTYAGLAHPAMIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDA 257 (688)
T ss_pred ccCHHHHhccchhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHC
Confidence 5789999985 999999999999999999864 36999999999999999 5789999999999999
Q ss_pred CCEEEeeeeeccccccccccCCCccccCCCCCCCCCcccCCCCCCC--CC--CCccCCCCCCCCCCCCCCCHHHHHHHHH
Q 004353 587 GMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQ--GR--GNKSSGDNFHAAPNIDHSQDFVRKDIKE 662 (759)
Q Consensus 587 GIkVIlDvV~NH~~~~~~~~~~~w~~~~~~~~w~~~~~~~~~~~f~--~~--g~~~~~~~~~~lpdLn~~np~Vr~~i~d 662 (759)
||+||||+|+||++..... +....+.+..+ ..+|. .. +.+..+ ....++||+++|+||++|++
T Consensus 258 GI~VIlDvV~NHt~~~~~~--~~~~~~~~~d~---------~~yy~~~~~~~~~~~~~--~g~gn~ln~~~p~vr~~i~d 324 (688)
T TIGR02100 258 GIEVILDVVYNHTAEGNEL--GPTLSFRGIDN---------ASYYRLQPDDKRYYIND--TGTGNTLNLSHPRVLQMVMD 324 (688)
T ss_pred CCEEEEEECcCCccCcCCC--CCcccccCCCC---------CcceEecCCCCceecCC--CCccccccCCCHHHHHHHHH
Confidence 9999999999999964211 00011111000 01111 00 111111 12236899999999999999
Q ss_pred HHHHHHHcCCccEEEEeccCcc---------cHHHHHHHHH--hCCCcEEEEeecCCC--CcccC-------ccCcCchh
Q 004353 663 WLCWLRNEIGYDGWRLDFVRGF---------WGGYVKDYLE--ATEPYFAVGEYWDSL--SYTYG-------EMDHNQDA 722 (759)
Q Consensus 663 ~l~~Wi~e~GVDGFRlD~ak~f---------~~~~~~~~~~--~~p~~~lvGE~w~~~--~y~~g-------~m~Y~~d~ 722 (759)
++++|++++||||||||+|.++ ...+++++++ ..+++++|||.|+.. .|..| +||+ .
T Consensus 325 ~l~~W~~e~gIDGfR~D~a~~l~~~~~~~~~~~~~~~~i~~d~~~~~~~ligE~W~~~~~~~~~~~~~~~~~~~Nd---~ 401 (688)
T TIGR02100 325 SLRYWVTEMHVDGFRFDLATTLGRELYGFDMLSGFFTAIRQDPVLAQVKLIAEPWDIGPGGYQVGNFPPGWAEWND---R 401 (688)
T ss_pred HHHHHHHHcCCcEEEEechhhhccccCCCcccHHHHHHHHhCcccCCeEEEEeeecCCCCcccccCCCCceEEecH---H
Confidence 9999999999999999999854 3578888877 357799999999864 34322 3454 7
Q ss_pred hhHHHHHHHHhhcC
Q 004353 723 HRQRIIDWINAASG 736 (759)
Q Consensus 723 ~~~~i~~yl~~~~~ 736 (759)
+|+.|+.|+++..+
T Consensus 402 frd~ir~f~~g~~~ 415 (688)
T TIGR02100 402 YRDDMRRFWRGDAG 415 (688)
T ss_pred HHHHHHHHHcCCCC
Confidence 89999999987654
No 13
>PRK03705 glycogen debranching enzyme; Provisional
Probab=100.00 E-value=4e-33 Score=326.03 Aligned_cols=221 Identities=20% Similarity=0.256 Sum_probs=157.9
Q ss_pred CCCcccceeeecccccccCC----CCCCHHHHHH--hHHHHHhcCCCEEEECCCCCCC-----------CCCCCCcccCC
Q 004353 502 PGTGTGFEILCQGFNWESHK----SGRWYMELKE--KATELSSLGFSVIWLPPPTESV-----------SPEGYMPRDLY 564 (759)
Q Consensus 502 ~g~~~~yev~~~~F~Wds~~----~Gg~l~GI~e--kLdYLk~LGvtaIwL~PIf~s~-----------s~hGYdp~Dy~ 564 (759)
..+.++||+++++|.-..+. .-|+|.|+++ +|+||++||||+|||+||+++. .+|||+|.|||
T Consensus 148 ~~~~vIYE~hvr~ft~~~~~~~~~~~Gtf~g~~~~~~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yf 227 (658)
T PRK03705 148 WGSTVIYEAHVRGLTYLHPEIPVEIRGTYAALGHPVMIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMF 227 (658)
T ss_pred ccccEEEEEehhhhcccCCCCCccccccHHHhhcccchHHHHHcCCCEEEecCcccCCCcccccccccccccCccccccc
Confidence 44556777777777621111 1367999997 5999999999999999999864 46999999999
Q ss_pred ccCCCCCCH-----HHHHHHHHHHHHcCCEEEeeeeeccccccccccCCCccccCCCCCCCCCcccCCCCCCCCCCCccC
Q 004353 565 NLSSRYGNI-----DELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSS 639 (759)
Q Consensus 565 ~Idp~~GT~-----edfk~LV~aaH~~GIkVIlDvV~NH~~~~~~~~~~~w~~~~~~~~w~~~~~~~~~~~f~~~g~~~~ 639 (759)
+|+++|||. +|||+||++||++||+||||+|+||++... ..+.+..+.+..+..+ .++...+.+..
T Consensus 228 a~d~~ygt~~~~~~~efk~LV~~~H~~GI~VIlDvV~NHt~~~~--~~~~~~~~~~~d~~~y-------y~~~~~g~~~~ 298 (658)
T PRK03705 228 ALDPAYASGPETALDEFRDAVKALHKAGIEVILDVVFNHSAELD--LDGPTLSLRGIDNRSY-------YWIREDGDYHN 298 (658)
T ss_pred ccccccCCCCcchHHHHHHHHHHHHHCCCEEEEEEcccCccCcC--CCCcchhcccCCCccc-------eEECCCCCcCC
Confidence 999999995 799999999999999999999999999631 1111211211100000 01111122222
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCccEEEEeccCcc------cH--HHHHHHHH--hCCCcEEEEeecCCC
Q 004353 640 GDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGF------WG--GYVKDYLE--ATEPYFAVGEYWDSL 709 (759)
Q Consensus 640 ~~~~~~lpdLn~~np~Vr~~i~d~l~~Wi~e~GVDGFRlD~ak~f------~~--~~~~~~~~--~~p~~~lvGE~w~~~ 709 (759)
+. ...++||+++|+|+++|+++++||+++|||||||||+|.++ +. .++++++. ..++++++||.|+..
T Consensus 299 ~~--g~g~~ln~~~p~Vr~~iid~l~~W~~e~gVDGFRfD~a~~l~~~~~~~~~~~~~~ai~~d~vl~~~~ligE~Wd~~ 376 (658)
T PRK03705 299 WT--GCGNTLNLSHPAVVDWAIDCLRYWVETCHVDGFRFDLATVLGRTPEFRQDAPLFTAIQNDPVLSQVKLIAEPWDIG 376 (658)
T ss_pred CC--CccCcccCCCHHHHHHHHHHHHHHHHHhCCCEEEEEcHhhhCcCcccchhhHHHHHHhhCccccceEEEEecccCC
Confidence 21 22479999999999999999999999999999999998754 33 25566654 346899999999863
Q ss_pred --CcccC-------ccCcCchhhhHHHHHHHHhhcC
Q 004353 710 --SYTYG-------EMDHNQDAHRQRIIDWINAASG 736 (759)
Q Consensus 710 --~y~~g-------~m~Y~~d~~~~~i~~yl~~~~~ 736 (759)
.|..| .||+ .+|+.|+.|+...++
T Consensus 377 ~~~~~~g~~~~~~~~~Nd---~fRd~ir~f~~~~~~ 409 (658)
T PRK03705 377 PGGYQVGNFPPPFAEWND---HFRDAARRFWLHGDL 409 (658)
T ss_pred CChhhhcCCCcceEEEch---HHHHHHHHHHccCCC
Confidence 24333 3443 689999999876543
No 14
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=100.00 E-value=6.5e-33 Score=323.91 Aligned_cols=207 Identities=20% Similarity=0.280 Sum_probs=147.4
Q ss_pred hhhhhhhhcccccCCCCCCccccccccCCCCCCCCCCCcccceeeecccccccCCCCCCHHHHHHhHHHHHhcCCCEEEE
Q 004353 467 KLAAEAYSIFRTTAPTFFEEAAVELEESKPPAKISPGTGTGFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWL 546 (759)
Q Consensus 467 ~~~aViYqIf~drF~ng~~s~~~~~~~~~~p~~~~~g~~~~yev~~~~F~Wds~~~Gg~l~GI~ekLdYLk~LGvtaIwL 546 (759)
+..+|||+++++.|...++++... .|+ |. ++. ......+.||+++|+||++||||+|||
T Consensus 125 ~~~~vIYElhv~~ft~~~~~~~~~-------------~G~-f~----~~~---e~~~~~~~g~~~~LdyL~~LGvt~I~L 183 (605)
T TIGR02104 125 PEDAIIYELHIRDFSIHENSGVKN-------------KGK-YL----GLT---ETGTKGPNGVSTGLDYLKELGVTHVQL 183 (605)
T ss_pred hhHcEEEEEecchhccCCCCCcCC-------------CCc-ee----eee---ccCccccccchhHHHHHHHcCCCEEEe
Confidence 344889999999998655443211 111 11 111 011234678999999999999999999
Q ss_pred CCCCCCCC----------CCCCCcccCCccCCCCCC--------HHHHHHHHHHHHHcCCEEEeeeeeccccccccccCC
Q 004353 547 PPPTESVS----------PEGYMPRDLYNLSSRYGN--------IDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNG 608 (759)
Q Consensus 547 ~PIf~s~s----------~hGYdp~Dy~~Idp~~GT--------~edfk~LV~aaH~~GIkVIlDvV~NH~~~~~~~~~~ 608 (759)
+||++..+ +|||++.||++++++||+ .+|||+||++||++||+||||+|+||++... +.
T Consensus 184 ~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~VilDvV~NH~~~~~---~~ 260 (605)
T TIGR02104 184 LPVFDFAGVDEEDPNNAYNWGYDPLNYNVPEGSYSTNPYDPATRIRELKQMIQALHENGIRVIMDVVYNHTYSRE---ES 260 (605)
T ss_pred CCcccccccccccCCCCCCCCCCCccCCCcChhhhcCCCccchHHHHHHHHHHHHHHCCCEEEEEEEcCCccCCC---CC
Confidence 99998763 599999999999999987 4899999999999999999999999998530 00
Q ss_pred CccccCCCCCCCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCccEEEEeccCcc----
Q 004353 609 VWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGF---- 684 (759)
Q Consensus 609 ~w~~~~~~~~w~~~~~~~~~~~f~~~g~~~~~~~~~~lpdLn~~np~Vr~~i~d~l~~Wi~e~GVDGFRlD~ak~f---- 684 (759)
.|.+..+..... ....+.+..+.++ ..++|+++|+||++|++++++|++++||||||||+|.++
T Consensus 261 ---~f~~~~~~~~~~-------~~~~g~~~~~~g~--~~~~~~~~~~v~~~i~~~~~~W~~e~~iDGfR~D~~~~~~~~~ 328 (605)
T TIGR02104 261 ---PFEKTVPGYYYR-------YNEDGTLSNGTGV--GNDTASEREMMRKFIVDSVLYWVKEYNIDGFRFDLMGIHDIET 328 (605)
T ss_pred ---cccCCCCCeeEE-------ECCCCCccCCCcc--cCCcccCCHHHHHHHHHHHHHHHHHcCCCEEEEechhcCCHHH
Confidence 111111100000 0011111111111 248999999999999999999999999999999999865
Q ss_pred cHHHHHHHHHhCCCcEEEEeecCCC
Q 004353 685 WGGYVKDYLEATEPYFAVGEYWDSL 709 (759)
Q Consensus 685 ~~~~~~~~~~~~p~~~lvGE~w~~~ 709 (759)
|.++.+++++..|+++++||.|+..
T Consensus 329 ~~~~~~~~~~~~p~~~ligE~w~~~ 353 (605)
T TIGR02104 329 MNEIRKALNKIDPNILLYGEGWDLG 353 (605)
T ss_pred HHHHHHHHHhhCCCeEEEEccCCCC
Confidence 4555555556678999999999864
No 15
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=100.00 E-value=1.5e-32 Score=316.67 Aligned_cols=203 Identities=23% Similarity=0.255 Sum_probs=158.1
Q ss_pred CCCcccceeeecccccccCCCCCCHHHHHHhHHHHHhcCCCEEEECCCCCCC--CCCCCCcccCCccCCCCCCHHHHHHH
Q 004353 502 PGTGTGFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDV 579 (759)
Q Consensus 502 ~g~~~~yev~~~~F~Wds~~~Gg~l~GI~ekLdYLk~LGvtaIwL~PIf~s~--s~hGYdp~Dy~~Idp~~GT~edfk~L 579 (759)
..+.++||++++.|. ..|+|+||+++|+||++||||+|||+||++.+ .+|||++.||+.|+++|||.+|||+|
T Consensus 91 ~~~~viYE~hv~~f~-----~~G~~~gi~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~~~G~~~e~k~l 165 (542)
T TIGR02402 91 LEEAVIYELHVGTFT-----PEGTFDAAIEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHNAYGGPDDLKAL 165 (542)
T ss_pred ccccEEEEEEhhhcC-----CCCCHHHHHHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCccccccccCCHHHHHHH
Confidence 456789999999997 37899999999999999999999999998776 57999999999999999999999999
Q ss_pred HHHHHHcCCEEEeeeeeccccccccccCCCccccCCCCCCCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCH---HH
Q 004353 580 VNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQD---FV 656 (759)
Q Consensus 580 V~aaH~~GIkVIlDvV~NH~~~~~~~~~~~w~~~~~~~~w~~~~~~~~~~~f~~~g~~~~~~~~~~lpdLn~~np---~V 656 (759)
|++||++||+||||+|+||++.+ +.+.. +. .++|... +.++++ +++|+++| +|
T Consensus 166 V~~aH~~Gi~VilD~V~NH~~~~-----~~~~~------~~-------~~y~~~~--~~~~wg----~~~n~~~~~~~~v 221 (542)
T TIGR02402 166 VDAAHGLGLGVILDVVYNHFGPE-----GNYLP------RY-------APYFTDR--YSTPWG----AAINFDGPGSDEV 221 (542)
T ss_pred HHHHHHCCCEEEEEEccCCCCCc-----ccccc------cc-------CccccCC--CCCCCC----CccccCCCcHHHH
Confidence 99999999999999999999853 11100 00 0122211 111222 57899999 99
Q ss_pred HHHHHHHHHHHHHcCCccEEEEeccCc--------ccHHHHHHHHHhCCC---cEEEEeecCC-CCcc----cCccCcCc
Q 004353 657 RKDIKEWLCWLRNEIGYDGWRLDFVRG--------FWGGYVKDYLEATEP---YFAVGEYWDS-LSYT----YGEMDHNQ 720 (759)
Q Consensus 657 r~~i~d~l~~Wi~e~GVDGFRlD~ak~--------f~~~~~~~~~~~~p~---~~lvGE~w~~-~~y~----~g~m~Y~~ 720 (759)
|++|++++++|+++|||||||||+|.+ ||.++.+.+++..|+ +++|||.|.+ ..+. .|.+.+..
T Consensus 222 r~~i~~~~~~W~~e~~iDGfR~D~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~li~E~~~~~~~~~~~~~~~~~~~d~ 301 (542)
T TIGR02402 222 RRYILDNALYWLREYHFDGLRLDAVHAIADTSAKHILEELAREVHELAAELRPVHLIAESDLNDPSLVTPREDGGYGLDA 301 (542)
T ss_pred HHHHHHHHHHHHHHhCCcEEEEeCHHHhccccHHHHHHHHHHHHHHHCCCCceEEEEEecCCCCCcccccccCCccceEE
Confidence 999999999999999999999999863 667777777777788 9999999854 2222 12222210
Q ss_pred ---hhhhHHHHHHHHh
Q 004353 721 ---DAHRQRIIDWINA 733 (759)
Q Consensus 721 ---d~~~~~i~~yl~~ 733 (759)
+.++..+..++..
T Consensus 302 ~~~~~~~~~~~~~~~g 317 (542)
T TIGR02402 302 QWNDDFHHALHVLLTG 317 (542)
T ss_pred EECchHHHHHHHHhcC
Confidence 2467788887754
No 16
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=100.00 E-value=2.2e-32 Score=337.57 Aligned_cols=348 Identities=16% Similarity=0.128 Sum_probs=214.4
Q ss_pred cccccccCccccCCCcceeEEEe-cCccceeEEEEEeCCCcccccCCc-ceEEeCCCCCCCCCcccccccccCCcccccc
Q 004353 345 NKALRTLLQPKEGGKGCSRLFTV-DEEFAGFLFVLKLNENTWLKCMEN-DFYIPLTSSSCLPAESVQEMLIPGKAEEATQ 422 (759)
Q Consensus 345 ~~a~eTpf~~~~~~~~~~~~~~L-~~~~~g~~FVL~~~~~~W~k~~g~-dfyi~l~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (759)
.+-+..|||+...+. -+.|.| ...=..+.+||. ++. ++. ...++|..... ..|.+ .++...
T Consensus 9 ~~g~~~plGA~~~~~--gv~F~v~ap~A~~V~L~lf-~~~-----~~~~~~~~~l~~~~g-------~vW~~--~i~~~~ 71 (1221)
T PRK14510 9 SPGFREPLGAVPDGG--GVNLALFSGAAERVEFCLF-DLW-----GVREEARIKLPGRTG-------DVWHG--FIVGVG 71 (1221)
T ss_pred CCCCCCCCceEEECC--eEEEEEECCCCCEEEEEEE-ECC-----CCCeeEEEECCCCcC-------CEEEE--EEccCC
Confidence 345677899988766 466888 666666888887 321 111 23567643322 24443 122111
Q ss_pred ccchhhhhhhHhhheeeeeecccccccccccchhhhhhhhHHhhhhhhh-hhhcccccCCCCCCcc---cc--------c
Q 004353 423 EVSQTAYTAGIIKEIRNLVSDFSSDISRKTKSKEAQKSILLEIEKLAAE-AYSIFRTTAPTFFEEA---AV--------E 490 (759)
Q Consensus 423 ~~~~~~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~q~~~~~~~~~~~aV-iYqIf~drF~ng~~s~---~~--------~ 490 (759)
.+ ..|.+.+...- ....+..++....+++.|...-..+.. -=.||++||.+++.++ .. .
T Consensus 72 -~g-~~Ygyrv~g~~-------~p~~g~rf~p~~~~lDPYA~~~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~pk~vv~~ 142 (1221)
T PRK14510 72 -PG-ARYGNRQEGPG-------GPGEGHRFNPPKLLVDPYARPLDRPFWLHQAIFDDRFFNGDEDLTDSAVLVPKVVVPT 142 (1221)
T ss_pred -CC-cEEEEEeccCC-------CcccccccCCCeEeeCCCCceEeCCcccCcccccccccCCCcccccCcccCccceeec
Confidence 22 13444443210 000000111112222323222111100 0018999998876521 00 0
Q ss_pred -ccc-CCCCCCCCCCCcccceeeecccccccCCCCCCHHHHHHhHH------HHHhcCCCEEEECCCCCCC---------
Q 004353 491 -LEE-SKPPAKISPGTGTGFEILCQGFNWESHKSGRWYMELKEKAT------ELSSLGFSVIWLPPPTESV--------- 553 (759)
Q Consensus 491 -~~~-~~~p~~~~~g~~~~yev~~~~F~Wds~~~Gg~l~GI~ekLd------YLk~LGvtaIwL~PIf~s~--------- 553 (759)
-++ ...+....+.+.++|++++++|....+..|++++|+.++|+ ||++||||+|||+||+++.
T Consensus 143 ~~~W~~~~~~~~~~~d~vIYE~hvr~ft~~~~~~gg~~~Gt~~~l~~~~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g 222 (1221)
T PRK14510 143 PFTWAPRSPLHGDWDDSPLYEMNVRGFTLRHDFFPGNLRGTFAKLAAPEAISYLKKLGVSIVELNPIFASVDEHHLPQLG 222 (1221)
T ss_pred ccccCCCCCCCCCcccCeEEEEccchhhccCCCCCcccCcHHhhcCCchhHHHHHHcCCCEEEeCCccccCccccccccc
Confidence 011 11222334567789999999998645556777666666666 9999999999999999864
Q ss_pred --CCCCCCcccCCccCCCCC--CHHHHHHHHHHHHHcCCEEEeeeeeccccccccccCCCccccCCCCCCCCCcccCCCC
Q 004353 554 --SPEGYMPRDLYNLSSRYG--NIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDP 629 (759)
Q Consensus 554 --s~hGYdp~Dy~~Idp~~G--T~edfk~LV~aaH~~GIkVIlDvV~NH~~~~~~~~~~~w~~~~~~~~w~~~~~~~~~~ 629 (759)
+||||++.||++|||+|| +.+|||+||++||++||+||||+|+|||+.+.... +.+ .+.+. ...+
T Consensus 223 ~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILDvV~NHt~~~~~~~-p~~-~~~~~---------d~~~ 291 (1221)
T PRK14510 223 LSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDVVFNHTGESNHYG-PTL-SAYGS---------DNSP 291 (1221)
T ss_pred CcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEEEccccccCCCCCC-Ccc-cccCC---------CCCC
Confidence 358999999999999999 99999999999999999999999999999651100 000 00000 0111
Q ss_pred CCCC----CCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCccEEEEeccCcc-------cHHHHHHHHHhCCC
Q 004353 630 HFQG----RGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGF-------WGGYVKDYLEATEP 698 (759)
Q Consensus 630 ~f~~----~g~~~~~~~~~~lpdLn~~np~Vr~~i~d~l~~Wi~e~GVDGFRlD~ak~f-------~~~~~~~~~~~~p~ 698 (759)
+|.. .+.+..+.+...++ |.++|+|+++|++++++|++ +||||||||+|.++ |..+.+.+++..++
T Consensus 292 yy~~~~~~~~~y~~~~G~gn~~--n~~~p~v~~~i~d~lr~Wv~-~gVDGfRfDla~~l~r~~~~f~~~~~~~l~ai~~d 368 (1221)
T PRK14510 292 YYRLEPGNPKEYENWWGCGNLP--NLERPFILRLPMDVLRSWAK-RGVDGFRLDLADELAREPDGFIDEFRQFLKAMDQD 368 (1221)
T ss_pred ceEecCCCCCcccCCCCCCCcc--ccCCHHHHHHHHHHHHHHHH-hCCCEEEEechhhhccCccchHHHHHHHHHHhCCC
Confidence 2211 11222333333444 55599999999999999997 99999999998755 55555666776777
Q ss_pred cEE-----EEeecCCCC--ccc-------CccCcCchhhhHHHHHHHHhhc
Q 004353 699 YFA-----VGEYWDSLS--YTY-------GEMDHNQDAHRQRIIDWINAAS 735 (759)
Q Consensus 699 ~~l-----vGE~w~~~~--y~~-------g~m~Y~~d~~~~~i~~yl~~~~ 735 (759)
.++ |||.|+... |.. +.||| .+++.|+.|+.+..
T Consensus 369 ~~l~~~~ligE~Wd~~~~~~~~g~f~~~~~~~N~---~frd~vr~f~~g~~ 416 (1221)
T PRK14510 369 PVLRRLKMIAEVWDDGLGGYQYGKFPQYWGEWND---PLRDIMRRFWLGDI 416 (1221)
T ss_pred cCcccCcEEEecccCCCCccccCCCCcceeeecc---HHHHHHHHHhcCCC
Confidence 665 999998632 332 45666 67899999987654
No 17
>PRK12313 glycogen branching enzyme; Provisional
Probab=100.00 E-value=4.4e-32 Score=318.54 Aligned_cols=212 Identities=17% Similarity=0.238 Sum_probs=150.9
Q ss_pred ccceeeecccccccCCCCCCHHHHHHhH-HHHHhcCCCEEEECCCCCCC--CCCCCCcccCCccCCCCCCHHHHHHHHHH
Q 004353 506 TGFEILCQGFNWESHKSGRWYMELKEKA-TELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDVVNK 582 (759)
Q Consensus 506 ~~yev~~~~F~Wds~~~Gg~l~GI~ekL-dYLk~LGvtaIwL~PIf~s~--s~hGYdp~Dy~~Idp~~GT~edfk~LV~a 582 (759)
++||+++++|.-...+.-|+|+||+++| +||++||||+|||+||++++ .+|||++.|||+|+|+|||.++||+||++
T Consensus 149 ~iYe~hv~~f~~~~~~~~g~~~~~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~lv~~ 228 (633)
T PRK12313 149 SIYEVHLGSWKRNEDGRPLSYRELADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRYGTPEDFMYLVDA 228 (633)
T ss_pred eEEEEehhccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCCCCHHHHHHHHHH
Confidence 3455555555421111126899999995 99999999999999999987 57999999999999999999999999999
Q ss_pred HHHcCCEEEeeeeeccccccccccCCCccccCCCCCCCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCHHHHHHHHH
Q 004353 583 FHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKE 662 (759)
Q Consensus 583 aH~~GIkVIlDvV~NH~~~~~~~~~~~w~~~~~~~~w~~~~~~~~~~~f~~~g~~~~~~~~~~lpdLn~~np~Vr~~i~d 662 (759)
||++||+||||+|+||++.+.. .+..|.+...+.. ......+.. .+ +.++||+.+|+||++|++
T Consensus 229 ~H~~Gi~VilD~V~nH~~~~~~----~~~~~~~~~~~~~---------~~~~~~~~~--~w-~~~~~n~~~~~vr~~l~~ 292 (633)
T PRK12313 229 LHQNGIGVILDWVPGHFPKDDD----GLAYFDGTPLYEY---------QDPRRAENP--DW-GALNFDLGKNEVRSFLIS 292 (633)
T ss_pred HHHCCCEEEEEECCCCCCCCcc----cccccCCCcceee---------cCCCCCcCC--CC-CCcccCCCCHHHHHHHHH
Confidence 9999999999999999996421 0111221100000 000000111 11 246899999999999999
Q ss_pred HHHHHHHcCCccEEEEeccC---------------------------cccHHHHHHHHHhCCCcEEEEeecCCCC-----
Q 004353 663 WLCWLRNEIGYDGWRLDFVR---------------------------GFWGGYVKDYLEATEPYFAVGEYWDSLS----- 710 (759)
Q Consensus 663 ~l~~Wi~e~GVDGFRlD~ak---------------------------~f~~~~~~~~~~~~p~~~lvGE~w~~~~----- 710 (759)
++++|+++|||||||||+|. +||..+.+.+++..|++++|||.|....
T Consensus 293 ~~~~W~~~~~iDG~R~D~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~v~~~~p~~~liaE~~~~~~~~~~~ 372 (633)
T PRK12313 293 SALFWLDEYHLDGLRVDAVSNMLYLDYDEEGEWTPNKYGGRENLEAIYFLQKLNEVVYLEHPDVLMIAEESTAWPKVTGP 372 (633)
T ss_pred HHHHHHHHhCCcEEEEcChhhhhhcccccccCcCCcccCCCCCcHHHHHHHHHHHHHHHHCCCeEEEEECCCCCcccccc
Confidence 99999999999999999874 3566666677777899999999985421
Q ss_pred cccCccCcC--ch-hhhHHHHHHHHh
Q 004353 711 YTYGEMDHN--QD-AHRQRIIDWINA 733 (759)
Q Consensus 711 y~~g~m~Y~--~d-~~~~~i~~yl~~ 733 (759)
...|.|+|+ ++ .+...+..|+..
T Consensus 373 ~~~gg~gfd~~w~~~~~~~~~~~~~~ 398 (633)
T PRK12313 373 VEVGGLGFDYKWNMGWMNDTLRYFEE 398 (633)
T ss_pred ccCCCCCcCceeCcHHHHHHHHHhhh
Confidence 123433332 11 445566666654
No 18
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=99.98 E-value=5.2e-32 Score=316.46 Aligned_cols=183 Identities=21% Similarity=0.206 Sum_probs=145.5
Q ss_pred cccceeeecccccccCCCCCCHHHHHHhH-HHHHhcCCCEEEECCCCCCC--CCCCCCcccCCccCCCCCCHHHHHHHHH
Q 004353 505 GTGFEILCQGFNWESHKSGRWYMELKEKA-TELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDVVN 581 (759)
Q Consensus 505 ~~~yev~~~~F~Wds~~~Gg~l~GI~ekL-dYLk~LGvtaIwL~PIf~s~--s~hGYdp~Dy~~Idp~~GT~edfk~LV~ 581 (759)
.++||+++++|. .+|++++|+++| +||++||||+|||+||++++ .+|||++.|||.|+++|||.+|||+||+
T Consensus 139 ~~iYe~hv~~~~-----~~g~~~~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~ 213 (613)
T TIGR01515 139 VSIYELHLGSWR-----HGLSYRELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVD 213 (613)
T ss_pred ceEEEEehhhcc-----CCCCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHHH
Confidence 468999999886 358999999997 99999999999999999986 5699999999999999999999999999
Q ss_pred HHHHcCCEEEeeeeeccccccccccCCCccccCCCCCCCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCHHHHHHHH
Q 004353 582 KFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIK 661 (759)
Q Consensus 582 aaH~~GIkVIlDvV~NH~~~~~~~~~~~w~~~~~~~~w~~~~~~~~~~~f~~~g~~~~~~~~~~lpdLn~~np~Vr~~i~ 661 (759)
+||++||+||||+|+||++.+.. .+..|.+... ++......... ...+.++||+++|+||++|+
T Consensus 214 ~~H~~Gi~VilD~V~NH~~~~~~----~~~~~~~~~~-----------y~~~~~~~~~~-~~w~~~~~~~~~~~Vr~~l~ 277 (613)
T TIGR01515 214 ACHQAGIGVILDWVPGHFPKDDH----GLAEFDGTPL-----------YEHKDPRDGEH-WDWGTLIFDYGRPEVRNFLV 277 (613)
T ss_pred HHHHCCCEEEEEecccCcCCccc----hhhccCCCcc-----------eeccCCccCcC-CCCCCceecCCCHHHHHHHH
Confidence 99999999999999999996421 0111211100 01000000000 11235799999999999999
Q ss_pred HHHHHHHHcCCccEEEEeccC----------------------------cccHHHHHHHHHhCCCcEEEEeecCC
Q 004353 662 EWLCWLRNEIGYDGWRLDFVR----------------------------GFWGGYVKDYLEATEPYFAVGEYWDS 708 (759)
Q Consensus 662 d~l~~Wi~e~GVDGFRlD~ak----------------------------~f~~~~~~~~~~~~p~~~lvGE~w~~ 708 (759)
+++++|+++|||||||||++. +||+++.+.+++..|++++|||.+..
T Consensus 278 ~~~~~W~~ey~iDG~R~D~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~v~~~~p~~~liaE~~~~ 352 (613)
T TIGR01515 278 ANALYWAEFYHIDGLRVDAVASMLYLDYSRDEGEWSPNEDGGRENLEAVDFLRKLNQTVYEAFPGVVTIAEESTE 352 (613)
T ss_pred HHHHHHHHHhCCcEEEEcCHHHhhhhccccccccccccccCCcCChHHHHHHHHHHHHHHHHCCCeEEEEEeCCC
Confidence 999999999999999999864 46677777777778999999998754
No 19
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=99.97 E-value=5.6e-32 Score=306.93 Aligned_cols=186 Identities=22% Similarity=0.344 Sum_probs=142.7
Q ss_pred hhhhhcccccCCCCCCccccccccCCCCCCCCCCCcccceeeecccccccCCCCCCHHHHHHhHHHHHhcCCCEEEECCC
Q 004353 470 AEAYSIFRTTAPTFFEEAAVELEESKPPAKISPGTGTGFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPP 549 (759)
Q Consensus 470 aViYqIf~drF~ng~~s~~~~~~~~~~p~~~~~g~~~~yev~~~~F~Wds~~~Gg~l~GI~ekLdYLk~LGvtaIwL~PI 549 (759)
+|+|||+||||.+++.++. ..+. .+|+|+||+++||||++|||++|||+||
T Consensus 1 ~viyqi~~~~f~d~~~~~~------------------------~~~~-----G~Gdl~Gi~~~LdYl~~LGv~aiwl~Pi 51 (505)
T COG0366 1 AVIYQIYPDRFADSNGSNG------------------------PDYD-----GGGDLKGITEKLDYLKELGVDAIWLSPI 51 (505)
T ss_pred CcEEEEechhhcCCCCCCc------------------------cCCC-----CcccHHhHHHhhhHHHHhCCCEEEeCCC
Confidence 5899999999998876530 0111 1499999999999999999999999999
Q ss_pred CCC-CCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCEEEeeeeecccccccc---c----c---C-CCccccCC--
Q 004353 550 TES-VSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQ---N----Q---N-GVWNIFGG-- 615 (759)
Q Consensus 550 f~s-~s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIkVIlDvV~NH~~~~~~---~----~---~-~~w~~~~~-- 615 (759)
+++ ..+|||++.||+.|||+|||++||++||++||++||+||+|+|+||++..+. . . . ..|+.+..
T Consensus 52 ~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi~vi~D~V~NH~s~~~~~f~~~~~~~~~~~~~~~~~W~~~~ 131 (505)
T COG0366 52 FESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILDLVFNHTSDEHPWFKEARSSKPNPKRSDYYIWRDPD 131 (505)
T ss_pred CCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCCEEEEEeccCcCCCccHHHHHHhcCCCCcccCCCceEccCc
Confidence 999 6899999999999999999999999999999999999999999999998732 1 1 1 14444322
Q ss_pred -----CCCCCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCccEEEEeccCcccH
Q 004353 616 -----RLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWG 686 (759)
Q Consensus 616 -----~~~w~~~~~~~~~~~f~~~g~~~~~~~~~~lpdLn~~np~Vr~~i~d~l~~Wi~e~GVDGFRlD~ak~f~~ 686 (759)
..+|........+.. ...+.+..+.....+||||+.||+||+++.+.+++|+ +.||||||+|++++++.
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~dln~~n~~v~~~~~~~~~~W~-~~gvDGfRlDa~~~~~~ 205 (505)
T COG0366 132 PDGTPPNNWFSVFGGDAWTW-GNTGEYYLHLFSSEQPDLNWENPEVREELLDVVKFWL-DKGVDGFRLDAAKHISK 205 (505)
T ss_pred ccCCCCCcchhhcCCCCCCc-CCCCceEEEecCCCCCCcCCCCHHHHHHHHHHHHHHH-HcCCCeEEeccHhhhcc
Confidence 111110000000000 1122233444567899999999999999999999999 59999999999987665
No 20
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=99.97 E-value=2.9e-31 Score=321.38 Aligned_cols=188 Identities=23% Similarity=0.371 Sum_probs=141.2
Q ss_pred CCCcccceeeecccccccCC------CCCCHHHHHHhHHHHHhcCCCEEEECCCCCC--------------------CCC
Q 004353 502 PGTGTGFEILCQGFNWESHK------SGRWYMELKEKATELSSLGFSVIWLPPPTES--------------------VSP 555 (759)
Q Consensus 502 ~g~~~~yev~~~~F~Wds~~------~Gg~l~GI~ekLdYLk~LGvtaIwL~PIf~s--------------------~s~ 555 (759)
..+.++||+++++|..+... .-|+|.||+++|+||++||||+|||+|||+. ..+
T Consensus 449 ~~d~vIYElHVrdFt~d~~~~~~~~~~~Gtf~gl~ekLdYLkeLGVT~I~LmPv~d~~~~~e~~~~~~~~~~~~~~~~yn 528 (1111)
T TIGR02102 449 REDAIIYEAHVRDFTSDPAIAGDLTAQFGTFAAFVEKLDYLQDLGVTHIQLLPVLSYFFVNEFKNKERMLDYASSNTNYN 528 (1111)
T ss_pred ccceEEEEEechhhCcCCCCCcccccCCcCHHHHHHhHHHHHHcCCCEEEEcCccccccccccccccccccccccccccc
Confidence 34556666666666643221 2478999999999999999999999999852 124
Q ss_pred CCCCcccCCccCCCCCC--------HHHHHHHHHHHHHcCCEEEeeeeeccccccccccCCCccccCCCCC-CCCCcccC
Q 004353 556 EGYMPRDLYNLSSRYGN--------IDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLN-WDDRAVVA 626 (759)
Q Consensus 556 hGYdp~Dy~~Idp~~GT--------~edfk~LV~aaH~~GIkVIlDvV~NH~~~~~~~~~~~w~~~~~~~~-w~~~~~~~ 626 (759)
|||+|.+||.++++||+ .+|||+||++||++||+||||+|+||++... .|.+..+ |+.+
T Consensus 529 WGYdp~~yfape~~Ygtdp~dp~~ri~EfK~LV~alH~~GI~VILDVVyNHt~~~~--------~f~~~~p~Yy~~---- 596 (1111)
T TIGR02102 529 WGYDPQNYFALSGMYSEDPKDPELRIAEFKNLINEIHKRGMGVILDVVYNHTAKVY--------IFEDLEPNYYHF---- 596 (1111)
T ss_pred cCCCcCcCcccccccccCCcCccccHHHHHHHHHHHHHCCCEEEEecccccccccc--------cccccCCCceEe----
Confidence 99999999999999998 4899999999999999999999999998641 1111100 1000
Q ss_pred CCCCCCCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCccEEEEeccCccc----HHHHHHHHHhCCCcEEE
Q 004353 627 DDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFW----GGYVKDYLEATEPYFAV 702 (759)
Q Consensus 627 ~~~~f~~~g~~~~~~~~~~lpdLn~~np~Vr~~i~d~l~~Wi~e~GVDGFRlD~ak~f~----~~~~~~~~~~~p~~~lv 702 (759)
.+..+.... .+ +..+++.++++||++|+++++||+++|||||||||++.++. ..++.++++..|+++|+
T Consensus 597 ----~~~~G~~~~--~~-~g~~l~~e~~~vrk~iiDsl~yWv~ey~VDGFRfDl~g~~d~~~~~~~~~~l~~~dP~~~li 669 (1111)
T TIGR02102 597 ----MDADGTPRT--SF-GGGRLGTTHEMSRRILVDSIKYLVDEFKVDGFRFDMMGDHDAASIEIAYKEAKAINPNIIMI 669 (1111)
T ss_pred ----eCCCCCccc--cc-CCCCCCcCCHHHHHHHHHHHHHHHHhcCCcEEEEeccccCCHHHHHHHHHHHHHhCcCEEEE
Confidence 001111111 11 23578999999999999999999999999999999998554 45555566667899999
Q ss_pred EeecCC
Q 004353 703 GEYWDS 708 (759)
Q Consensus 703 GE~w~~ 708 (759)
||.|+.
T Consensus 670 GE~W~~ 675 (1111)
T TIGR02102 670 GEGWRT 675 (1111)
T ss_pred Eecccc
Confidence 999985
No 21
>PRK05402 glycogen branching enzyme; Provisional
Probab=99.97 E-value=1.2e-30 Score=310.29 Aligned_cols=168 Identities=23% Similarity=0.318 Sum_probs=131.7
Q ss_pred CCHHHHHHhH-HHHHhcCCCEEEECCCCCCCC--CCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCEEEeeeeecccc
Q 004353 524 RWYMELKEKA-TELSSLGFSVIWLPPPTESVS--PEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRC 600 (759)
Q Consensus 524 g~l~GI~ekL-dYLk~LGvtaIwL~PIf~s~s--~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIkVIlDvV~NH~~ 600 (759)
|+|+||+++| +||++||||+|||+||++++. +|||++.||++|+|+|||.+|||+||++||++||+||||+|+||++
T Consensus 262 g~~~~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~Gt~~dfk~lV~~~H~~Gi~VilD~V~NH~~ 341 (726)
T PRK05402 262 LSYRELADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRFGTPDDFRYFVDACHQAGIGVILDWVPAHFP 341 (726)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCCC
Confidence 5899999996 999999999999999998764 6999999999999999999999999999999999999999999998
Q ss_pred ccccccCCCccccCCCCCCCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCccEEEEec
Q 004353 601 AHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDF 680 (759)
Q Consensus 601 ~~~~~~~~~w~~~~~~~~w~~~~~~~~~~~f~~~g~~~~~~~~~~lpdLn~~np~Vr~~i~d~l~~Wi~e~GVDGFRlD~ 680 (759)
.+.. + +..|++...|... ++ ..+.+..| +..++|+.+|+||++|++++++|++++||||||||+
T Consensus 342 ~~~~---~-~~~~~~~~~y~~~-----~~---~~~~~~~w----~~~~~n~~~~~v~~~l~~~~~~W~~e~~iDG~R~D~ 405 (726)
T PRK05402 342 KDAH---G-LARFDGTALYEHA-----DP---REGEHPDW----GTLIFNYGRNEVRNFLVANALYWLEEFHIDGLRVDA 405 (726)
T ss_pred CCcc---c-hhccCCCcceecc-----CC---cCCccCCC----CCccccCCCHHHHHHHHHHHHHHHHHhCCcEEEECC
Confidence 6411 0 1112211001000 00 00111111 124789999999999999999999999999999998
Q ss_pred cC----------------------------cccHHHHHHHHHhCCCcEEEEeecC
Q 004353 681 VR----------------------------GFWGGYVKDYLEATEPYFAVGEYWD 707 (759)
Q Consensus 681 ak----------------------------~f~~~~~~~~~~~~p~~~lvGE~w~ 707 (759)
+. +||..+.+.+++..|++++|||.+.
T Consensus 406 v~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~p~~~liaE~~~ 460 (726)
T PRK05402 406 VASMLYLDYSRKEGEWIPNIYGGRENLEAIDFLRELNAVVHEEFPGALTIAEEST 460 (726)
T ss_pred HHHhhhccccccccccccccccCcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 63 3566666777777899999999764
No 22
>KOG0471 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=99.97 E-value=4e-31 Score=304.44 Aligned_cols=244 Identities=30% Similarity=0.462 Sum_probs=179.6
Q ss_pred cccceeeecccccccCCCCCCHHHHHHhHHHHHhcCCCEEEECCCCCCCC-CCCCCcccCCccCCCCCCHHHHHHHHHHH
Q 004353 505 GTGFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESVS-PEGYMPRDLYNLSSRYGNIDELKDVVNKF 583 (759)
Q Consensus 505 ~~~yev~~~~F~Wds~~~Gg~l~GI~ekLdYLk~LGvtaIwL~PIf~s~s-~hGYdp~Dy~~Idp~~GT~edfk~LV~aa 583 (759)
...|+|+.+.|.|+....-|+++||.+|||||++|||++|||+||+++.. +|||++.||+.|+|+|||++||++||+++
T Consensus 18 ~~~YQI~~~sF~~s~~d~~G~~~GI~~kldyi~~lG~taiWisP~~~s~~~~~GY~~~d~~~l~p~fGt~edf~~Li~~~ 97 (545)
T KOG0471|consen 18 ESIYQIYPDSFADSDGDGVGDLKGITSKLDYIKELGFTAIWLSPFTKSSKPDFGYDASDLEQLRPRFGTEEDFKELILAM 97 (545)
T ss_pred CceeEEeccccccccCCCccccccchhhhhHHHhcCCceEEeCCCcCCCHHHhccCccchhhhcccccHHHHHHHHHHHH
Confidence 33444444444433333347899999999999999999999999999885 59999999999999999999999999999
Q ss_pred HHcCCEEEeeeeecccccc---ccc----cCC--CccccCC-----------CCCCCCCcccCCCCCCCCCCCccCCCCC
Q 004353 584 HDVGMKILGDVVLNHRCAH---YQN----QNG--VWNIFGG-----------RLNWDDRAVVADDPHFQGRGNKSSGDNF 643 (759)
Q Consensus 584 H~~GIkVIlDvV~NH~~~~---~~~----~~~--~w~~~~~-----------~~~w~~~~~~~~~~~f~~~g~~~~~~~~ 643 (759)
|++||++|+|+|+||++.. |.. ..+ .|+.+.+ +.+|.+......+++...++.++.+...
T Consensus 98 h~~gi~ii~D~viNh~~~~~~wf~~~~~~~~~y~d~~~~~~~~~~~~g~~~~p~nw~~~~~~s~~~~~e~~~~~~l~~~~ 177 (545)
T KOG0471|consen 98 HKLGIKIIADLVINHRSDEVEWFKASPTSKTGYEDWYPWHDGSSLDVGKRIPPLNWLSVFGGSAWPFDEGRQKYYLGQFA 177 (545)
T ss_pred hhcceEEEEeeccccCCccccccccCccccccceeeeeccCcccccccCCCCccchHhhhccccCcccccccceeccchh
Confidence 9999999999999999964 211 111 2333221 1334333333334444556677777778
Q ss_pred CCCCCCCCCCHHHHHHHHHHHH-HHHHcCCccEEEEeccCcccHHHHHHHHHhCCCcEEEEeecCCCCcc-cCccCcCch
Q 004353 644 HAAPNIDHSQDFVRKDIKEWLC-WLRNEIGYDGWRLDFVRGFWGGYVKDYLEATEPYFAVGEYWDSLSYT-YGEMDHNQD 721 (759)
Q Consensus 644 ~~lpdLn~~np~Vr~~i~d~l~-~Wi~e~GVDGFRlD~ak~f~~~~~~~~~~~~p~~~lvGE~w~~~~y~-~g~m~Y~~d 721 (759)
..+||||++||.|++.|.++++ +|. ++|+||||+|+++++...+.. ......+.+-.||.|++..+. ...++|..+
T Consensus 178 ~~~pDln~~n~~V~~~~~~~l~~~~~-~~gvdGfRiD~v~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~ 255 (545)
T KOG0471|consen 178 VLQPDLNYENPDVRKAIKEWLRDFWL-EKGVDGFRIDAVKGYAGENFK-NMWPDEPVFDVGEKLQDDNYVAYQYNDYGED 255 (545)
T ss_pred hcCCCCCCCCHHHHHHHHHHHHHHHh-hcCCCeEEEEccccccccccc-ccccCCCcccceeEecCcchhhccccccccc
Confidence 8999999999999999999999 666 999999999999998887655 233345689999999987765 466777766
Q ss_pred hhhH--HHHHHHHhhcCCCCCCceeeehhhh
Q 004353 722 AHRQ--RIIDWINAASGTAGAFDVTTKGILH 750 (759)
Q Consensus 722 ~~~~--~i~~yl~~~~~~~~~fDf~l~~~l~ 750 (759)
.... -+..+-...+...++++|.-+..+.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 286 (545)
T KOG0471|consen 256 QPEIHDLIRAERFLLDDYSAAFGFGDKRILQ 286 (545)
T ss_pred chhhhhHHHHHHhhhhhhhhcccccchhhhh
Confidence 3222 3333333344567778776555554
No 23
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=99.97 E-value=1.8e-30 Score=309.40 Aligned_cols=237 Identities=17% Similarity=0.185 Sum_probs=158.4
Q ss_pred cchhhhhhhHhhheeeeeecccccccccccchhhhhhh---hHHhhhhhhhhhhcccccCCCCCCccccccccCCCCCCC
Q 004353 424 VSQTAYTAGIIKEIRNLVSDFSSDISRKTKSKEAQKSI---LLEIEKLAAEAYSIFRTTAPTFFEEAAVELEESKPPAKI 500 (759)
Q Consensus 424 ~~~~~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~q~~~---~~~~~~~~aViYqIf~drF~ng~~s~~~~~~~~~~p~~~ 500 (759)
+.||+..-. .++.+++++++.... .+...|+... .....+.++|||+++++.|...+++....
T Consensus 208 ~DPYA~als-~n~~~S~VvDl~~~~---~~p~~W~~~~~p~p~~~~~~d~iIYElHVRDFS~~d~s~~~~---------- 273 (898)
T TIGR02103 208 TDPYSVSLS-ANSEYSQVVDLNDPA---LKPEGWDALAMPKPQLASFADMVLYELHIRDFSANDESVPAE---------- 273 (898)
T ss_pred eCcCcceEc-CCCCCeEEeCCcccc---CCCcchhhcccccCCcCCCcccEEEEEeccccccCCCCCCcC----------
Confidence 445544432 366778888875431 0111121110 00123456899999999998655442111
Q ss_pred CCCCcccceeeecccccccCCCCCCHHHH-------HHhHHHHHhcCCCEEEECCCCCCC--------------------
Q 004353 501 SPGTGTGFEILCQGFNWESHKSGRWYMEL-------KEKATELSSLGFSVIWLPPPTESV-------------------- 553 (759)
Q Consensus 501 ~~g~~~~yev~~~~F~Wds~~~Gg~l~GI-------~ekLdYLk~LGvtaIwL~PIf~s~-------------------- 553 (759)
. -|.|.++ ++.|.||++||||+|.|+|||+..
T Consensus 274 --~-------------------rGtYla~tE~~t~gi~hLk~L~eLGVThVeLLPv~df~tvdE~~~~~~~~~~~~~~l~ 332 (898)
T TIGR02103 274 --L-------------------RGKYLAFTAADSAGVQHLKKLADAGVTHLHLLPTFDIATVNEEKEKVADIQQPFSKLC 332 (898)
T ss_pred --c-------------------CceeeehhccchhhhHHHHHHHhCCCcEEEEcChhhcCccccccccccccccchhhhh
Confidence 0 1222333 456788889999999999998642
Q ss_pred --------------------------------------------CCCCCCcccCCccCCCCCCH-------HHHHHHHHH
Q 004353 554 --------------------------------------------SPEGYMPRDLYNLSSRYGNI-------DELKDVVNK 582 (759)
Q Consensus 554 --------------------------------------------s~hGYdp~Dy~~Idp~~GT~-------edfk~LV~a 582 (759)
.||||+|..|+.++.+|++. .|||+||++
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~v~~~~~~d~yNWGYDP~~y~aPegSYatdp~g~~Ri~Efk~mV~a 412 (898)
T TIGR02103 333 ELNPDSKSSEFAGYCDSGSQLKQNDSKDNPEVQALNTLVRNLDSYNWGYDPFHYTVPEGSYATDPEGPARIKEFREMVQA 412 (898)
T ss_pred ccccccccccccccccccccccccccccchhhhhhhhhhccCCCCCCCCCCcccCCcChhhccCCCCchHHHHHHHHHHH
Confidence 26999999999999999984 699999999
Q ss_pred HHHcCCEEEeeeeeccccccccccCCCccccCCCCCCCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCHHHHHHHHH
Q 004353 583 FHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKE 662 (759)
Q Consensus 583 aH~~GIkVIlDvV~NH~~~~~~~~~~~w~~~~~~~~w~~~~~~~~~~~f~~~g~~~~~~~~~~lpdLn~~np~Vr~~i~d 662 (759)
||++||+||||+|+|||+....... ..+....++++... ...+.. .......+++.++++||++|++
T Consensus 413 lH~~Gi~VIlDVVyNHt~~~g~~~~---s~ld~~~P~YY~r~-------~~~G~~---~n~~~~~d~a~e~~~Vrk~iiD 479 (898)
T TIGR02103 413 LNKTGLNVVMDVVYNHTNASGPNDR---SVLDKIVPGYYHRL-------NEDGGV---ENSTCCSNTATEHRMMAKLIVD 479 (898)
T ss_pred HHHCCCEEEEEeecccccccCccCc---ccccccCcHhhEee-------CCCCCe---ecCCCCcCCCCCCHHHHHHHHH
Confidence 9999999999999999997522111 01111111111110 001111 1122346789999999999999
Q ss_pred HHHHHHHcCCccEEEEeccCcccH----HHHHHHHHhCCCcEEEEeecCC
Q 004353 663 WLCWLRNEIGYDGWRLDFVRGFWG----GYVKDYLEATEPYFAVGEYWDS 708 (759)
Q Consensus 663 ~l~~Wi~e~GVDGFRlD~ak~f~~----~~~~~~~~~~p~~~lvGE~w~~ 708 (759)
++++|+++|||||||||+++++.. ++++++++..|++|++||.|+.
T Consensus 480 sl~~W~~ey~VDGFRfDlm~~~~~~f~~~~~~~l~~i~pdi~l~GEgW~~ 529 (898)
T TIGR02103 480 SLVVWAKDYKVDGFRFDLMGHHPKAQMLAAREAIKALTPEIYFYGEGWDF 529 (898)
T ss_pred HHHHHHHHcCCCEEEEechhhCCHHHHHHHHHHHHHhCCCEEEEecCCCc
Confidence 999999999999999999987644 4555556667999999999985
No 24
>PRK12568 glycogen branching enzyme; Provisional
Probab=99.96 E-value=3.7e-29 Score=292.61 Aligned_cols=216 Identities=19% Similarity=0.269 Sum_probs=154.2
Q ss_pred CCCcccceeeecccccccCCCCCCHHHHHHh-HHHHHhcCCCEEEECCCCCCC--CCCCCCcccCCccCCCCCCHHHHHH
Q 004353 502 PGTGTGFEILCQGFNWESHKSGRWYMELKEK-ATELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKD 578 (759)
Q Consensus 502 ~g~~~~yev~~~~F~Wds~~~Gg~l~GI~ek-LdYLk~LGvtaIwL~PIf~s~--s~hGYdp~Dy~~Idp~~GT~edfk~ 578 (759)
....++||+++++|.-...+..+++++++++ |+||++||||+|||+||++++ .+|||++.+||+++++||+.++||+
T Consensus 244 ~~~~~IYEvHvgsf~~~~~~~~~~~~~la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~~~G~~~dfk~ 323 (730)
T PRK12568 244 PAPLSIYEVHAASWRRDGHNQPLDWPTLAEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTARHGSPDGFAQ 323 (730)
T ss_pred CCCcEEEEEEhHHhcCCCCCCCCCHHHHHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCcccCCHHHHHH
Confidence 3445678888888773322223579999998 599999999999999999876 4799999999999999999999999
Q ss_pred HHHHHHHcCCEEEeeeeeccccccccccCCCccccCCCCCCCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCHHHHH
Q 004353 579 VVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRK 658 (759)
Q Consensus 579 LV~aaH~~GIkVIlDvV~NH~~~~~~~~~~~w~~~~~~~~w~~~~~~~~~~~f~~~g~~~~~~~~~~lpdLn~~np~Vr~ 658 (759)
||++||++||+||||+|+||++.+.. .+..|++...|... + + ..+... ++..+ .+|+.+|+||+
T Consensus 324 lV~~~H~~Gi~VIlD~V~nH~~~d~~----~l~~fdg~~~Ye~~----d-~---~~g~~~---~W~~~-~~N~~~peVr~ 387 (730)
T PRK12568 324 FVDACHRAGIGVILDWVSAHFPDDAH----GLAQFDGAALYEHA----D-P---REGMHR---DWNTL-IYNYGRPEVTA 387 (730)
T ss_pred HHHHHHHCCCEEEEEeccccCCcccc----ccccCCCccccccC----C-C---cCCccC---CCCCe-ecccCCHHHHH
Confidence 99999999999999999999996421 11222221111100 0 0 001111 22222 58999999999
Q ss_pred HHHHHHHHHHHcCCccEEEEeccCc----------------------------ccHHHHHHHHHhCCCcEEEEeecCCC-
Q 004353 659 DIKEWLCWLRNEIGYDGWRLDFVRG----------------------------FWGGYVKDYLEATEPYFAVGEYWDSL- 709 (759)
Q Consensus 659 ~i~d~l~~Wi~e~GVDGFRlD~ak~----------------------------f~~~~~~~~~~~~p~~~lvGE~w~~~- 709 (759)
+|++++++|+++|||||||+|++.. |++++.+.+++..|++++|||.+..-
T Consensus 388 ~li~~a~~Wl~eyhIDG~R~DAva~mly~d~~r~~g~w~pn~~gg~en~ea~~Fl~~ln~~v~~~~P~~~~IAEest~~p 467 (730)
T PRK12568 388 YLLGSALEWIEHYHLDGLRVDAVASMLYRDYGRAEGEWVPNAHGGRENLEAVAFLRQLNREIASQFPGVLTIAEESTAWP 467 (730)
T ss_pred HHHHHHHHHHHHhCceEEEEcCHhHhhhhccccccccccccccCCccChHHHHHHHHHHHHHHHHCCCeEEEEEcCCCCc
Confidence 9999999999999999999998743 45555556666789999999986531
Q ss_pred ----CcccCc--cCcCch-hhhHHHHHHHHh
Q 004353 710 ----SYTYGE--MDHNQD-AHRQRIIDWINA 733 (759)
Q Consensus 710 ----~y~~g~--m~Y~~d-~~~~~i~~yl~~ 733 (759)
+...|. ++|.++ +...-+.+|+..
T Consensus 468 ~vt~p~~~gGlGFd~kwn~gwm~d~l~y~~~ 498 (730)
T PRK12568 468 GVTAPISDGGLGFTHKWNMGWMHDTLHYMQR 498 (730)
T ss_pred cccccccCCCCCcCcEeCChhHHHHHHHHhh
Confidence 111221 222222 345566677765
No 25
>PRK14705 glycogen branching enzyme; Provisional
Probab=99.96 E-value=1.1e-28 Score=300.77 Aligned_cols=184 Identities=21% Similarity=0.289 Sum_probs=141.7
Q ss_pred CcccceeeecccccccCCCCCCHHHHHHh-HHHHHhcCCCEEEECCCCCCC--CCCCCCcccCCccCCCCCCHHHHHHHH
Q 004353 504 TGTGFEILCQGFNWESHKSGRWYMELKEK-ATELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDVV 580 (759)
Q Consensus 504 ~~~~yev~~~~F~Wds~~~Gg~l~GI~ek-LdYLk~LGvtaIwL~PIf~s~--s~hGYdp~Dy~~Idp~~GT~edfk~LV 580 (759)
..++||+++++|. .+++|++++++ |+|||+||||+|||+||++++ .+|||++.+||.++++|||.+|||+||
T Consensus 747 p~~IYEvHvgsf~-----~~~~~~~l~~~lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~ryGt~~dfk~lV 821 (1224)
T PRK14705 747 PMSVYEVHLGSWR-----LGLGYRELAKELVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTSRFGHPDEFRFLV 821 (1224)
T ss_pred CcEEEEEEecccc-----cCCchHHHHHHHHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCcccCCHHHHHHHH
Confidence 3578999999987 26789999988 599999999999999999876 569999999999999999999999999
Q ss_pred HHHHHcCCEEEeeeeeccccccccccCCCccccCCCCCCCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCHHHHHHH
Q 004353 581 NKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDI 660 (759)
Q Consensus 581 ~aaH~~GIkVIlDvV~NH~~~~~~~~~~~w~~~~~~~~w~~~~~~~~~~~f~~~g~~~~~~~~~~lpdLn~~np~Vr~~i 660 (759)
++||++||+||||+|+||++.+.. + ...|++...|.. .++. .+.. .++. ...+|+.+++||++|
T Consensus 822 d~~H~~GI~VILD~V~nH~~~d~~---~-l~~fdg~~~y~~-----~d~~---~g~~---~~Wg-~~~fn~~~~eVr~fl 885 (1224)
T PRK14705 822 DSLHQAGIGVLLDWVPAHFPKDSW---A-LAQFDGQPLYEH-----ADPA---LGEH---PDWG-TLIFDFGRTEVRNFL 885 (1224)
T ss_pred HHHHHCCCEEEEEeccccCCcchh---h-hhhcCCCccccc-----CCcc---cCCC---CCCC-CceecCCCHHHHHHH
Confidence 999999999999999999986410 0 011222100100 0000 0111 1122 246999999999999
Q ss_pred HHHHHHHHHcCCccEEEEeccCcc----------------------------cHHHHHHHHHhCCCcEEEEeecCC
Q 004353 661 KEWLCWLRNEIGYDGWRLDFVRGF----------------------------WGGYVKDYLEATEPYFAVGEYWDS 708 (759)
Q Consensus 661 ~d~l~~Wi~e~GVDGFRlD~ak~f----------------------------~~~~~~~~~~~~p~~~lvGE~w~~ 708 (759)
++++++|+++|+|||||+|++.+| ++.+.+.+.+..|++++|||.+..
T Consensus 886 i~~a~~Wl~eyhiDGfR~Dav~~mly~Dysr~~g~w~pn~~gg~en~~ai~fl~~ln~~v~~~~p~~~~IAEest~ 961 (1224)
T PRK14705 886 VANALYWLDEFHIDGLRVDAVASMLYLDYSREEGQWRPNRFGGRENLEAISFLQEVNATVYKTHPGAVMIAEESTA 961 (1224)
T ss_pred HHHHHHHHHHhCCCcEEEeehhhhhhcccccccccccccccCCccChHHHHHHHHHHHHHHHHCCCeEEEEEcCCC
Confidence 999999999999999999998654 333333444457899999998875
No 26
>PRK14706 glycogen branching enzyme; Provisional
Probab=99.96 E-value=9.5e-29 Score=288.79 Aligned_cols=186 Identities=18% Similarity=0.187 Sum_probs=137.5
Q ss_pred cccceeeecccccccCCCC--CCHHHHHHhH-HHHHhcCCCEEEECCCCCCC--CCCCCCcccCCccCCCCCCHHHHHHH
Q 004353 505 GTGFEILCQGFNWESHKSG--RWYMELKEKA-TELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDV 579 (759)
Q Consensus 505 ~~~yev~~~~F~Wds~~~G--g~l~GI~ekL-dYLk~LGvtaIwL~PIf~s~--s~hGYdp~Dy~~Idp~~GT~edfk~L 579 (759)
.++||+++++|... ..| ++|++++++| +||++||||+|+|+||++++ .+|||++.+||+++++|||.+|||+|
T Consensus 145 ~~IYE~Hvg~f~~~--~~g~~~ty~~~~~~l~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~~~g~~~~~~~l 222 (639)
T PRK14706 145 ISIYEVHVGSWARR--DDGWFLNYRELAHRLGEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTSRLGTPEDFKYL 222 (639)
T ss_pred cEEEEEehhhcccC--CCCCccCHHHHHHHHHHHHHHcCCCEEEccchhcCCCCCCCCcCcccccccccccCCHHHHHHH
Confidence 34666666666421 122 4799999997 89999999999999999875 46999999999999999999999999
Q ss_pred HHHHHHcCCEEEeeeeeccccccccccCCCccccCCCCCCCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCHHHHHH
Q 004353 580 VNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKD 659 (759)
Q Consensus 580 V~aaH~~GIkVIlDvV~NH~~~~~~~~~~~w~~~~~~~~w~~~~~~~~~~~f~~~g~~~~~~~~~~lpdLn~~np~Vr~~ 659 (759)
|++||++||+||||+|+||++.+.. .+..+++...+.. ......+. ..+.. ..+|+.+++||++
T Consensus 223 v~~~H~~gi~VilD~v~nH~~~~~~----~l~~~dg~~~y~~---------~~~~~g~~--~~w~~-~~~~~~~~eVr~~ 286 (639)
T PRK14706 223 VNHLHGLGIGVILDWVPGHFPTDES----GLAHFDGGPLYEY---------ADPRKGYH--YDWNT-YIFDYGRNEVVMF 286 (639)
T ss_pred HHHHHHCCCEEEEEecccccCcchh----hhhccCCCcceec---------cCCcCCcC--CCCCC-cccCCCCHHHHHH
Confidence 9999999999999999999986521 1111222100000 00000010 11112 2488999999999
Q ss_pred HHHHHHHHHHcCCccEEEEeccCcc--------------------------cHHHHHHHHHhCCCcEEEEeecCC
Q 004353 660 IKEWLCWLRNEIGYDGWRLDFVRGF--------------------------WGGYVKDYLEATEPYFAVGEYWDS 708 (759)
Q Consensus 660 i~d~l~~Wi~e~GVDGFRlD~ak~f--------------------------~~~~~~~~~~~~p~~~lvGE~w~~ 708 (759)
|++++++|++++||||||+|++.+| ++.+.+.+++..|++++|||.|.+
T Consensus 287 l~~~~~~W~~e~~iDG~R~Dav~~~ly~d~~~~~~~~~~~gg~~n~~a~~fl~~ln~~v~~~~p~~~~iAE~~~~ 361 (639)
T PRK14706 287 LIGSALKWLQDFHVDGLRVDAVASMLYLDFSRTEWVPNIHGGRENLEAIAFLKRLNEVTHHMAPGCMMIAEESTS 361 (639)
T ss_pred HHHHHHHHHHHhCCCeEEEeeehheeecccCcccccccccCCcccHHHHHHHHHHHHHHHHhCCCeEEEEECCCC
Confidence 9999999999999999999997654 333334444557899999999875
No 27
>PLN02877 alpha-amylase/limit dextrinase
Probab=99.96 E-value=8e-29 Score=294.84 Aligned_cols=167 Identities=18% Similarity=0.184 Sum_probs=120.2
Q ss_pred HHhHHHHHhcCCCEEEECCCCCCC---------------------------------------CCCCCCcccCCccCCCC
Q 004353 530 KEKATELSSLGFSVIWLPPPTESV---------------------------------------SPEGYMPRDLYNLSSRY 570 (759)
Q Consensus 530 ~ekLdYLk~LGvtaIwL~PIf~s~---------------------------------------s~hGYdp~Dy~~Idp~~ 570 (759)
++.|+||++||||+|+|+|+|+.. .||||+|..|+.++.+|
T Consensus 376 i~hLk~LkelGVThVeLLPvfDf~tvdE~~~~~~~~~~~~l~~~~~~s~~~q~~v~~~~~~d~yNWGYDP~~YfaPEgSY 455 (970)
T PLN02877 376 VLHLKKLADAGLTHVHLLPTFQFGSVDDEKENWKCVDPKELEKLPPDSEEQQAAITAIQDDDGYNWGYNPVLWGVPKGSY 455 (970)
T ss_pred HHHHHHHHHcCCCEEEeCCccccCCcccccccccccccchhccccccchhhhhcccccccCCCCCCCCCccccCCCCccc
Confidence 345778888899999999999741 46999999999999999
Q ss_pred CCH-------HHHHHHHHHHHHcCCEEEeeeeeccccccccccCCCccccCCCCCCCCCcccCCCCCCCCCCCccCCCCC
Q 004353 571 GNI-------DELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNF 643 (759)
Q Consensus 571 GT~-------edfk~LV~aaH~~GIkVIlDvV~NH~~~~~~~~~~~w~~~~~~~~w~~~~~~~~~~~f~~~g~~~~~~~~ 643 (759)
+|. .|||+||++||++||+||||+|+||++...... .-+.+....++++... +..|.. .+.
T Consensus 456 atdP~g~~RI~efk~mV~~lH~~GI~VImDVVyNHt~~~g~~~--~~s~ld~~vP~YY~r~-------~~~G~~---~ns 523 (970)
T PLN02877 456 ASNPDGPCRIIEFRKMVQALNRIGLRVVLDVVYNHLHSSGPFD--ENSVLDKIVPGYYLRR-------NSDGFI---ENS 523 (970)
T ss_pred ccCCCCcchHHHHHHHHHHHHHCCCEEEEEECCccccCCCCcc--hhhcccCCCCCceEEE-------CCCCCc---ccC
Confidence 983 589999999999999999999999998531100 0011111111111110 011111 011
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHcCCccEEEEeccCcccHHHHH----HHHHh--------CCCcEEEEeecCC
Q 004353 644 HAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVK----DYLEA--------TEPYFAVGEYWDS 708 (759)
Q Consensus 644 ~~lpdLn~~np~Vr~~i~d~l~~Wi~e~GVDGFRlD~ak~f~~~~~~----~~~~~--------~p~~~lvGE~w~~ 708 (759)
....+.+.++++||++|++++++|+++|||||||||++.++..+.+. .+.+. .++++++||.|+.
T Consensus 524 ~c~n~~Ase~~mvrklIlDsl~yW~~ey~VDGFRFDlmg~i~~~tm~~~~~~L~~i~~~~~~~dg~~i~lyGEgW~~ 600 (970)
T PLN02877 524 TCVNNTASEHYMVDRLIVDDLLNWAVNYKVDGFRFDLMGHLMKRTMVRAKDALQSLTLERDGVDGSSIYLYGEGWDF 600 (970)
T ss_pred CccCCCccCCHHHHHHHHHHHHHHHHHhCCCEEEEEccccccHHHHHHHHHHHHHHhhhhcccCCCceEEEEeCCCC
Confidence 23356678999999999999999999999999999999977665333 33333 2669999999974
No 28
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=99.96 E-value=2.9e-29 Score=291.82 Aligned_cols=227 Identities=23% Similarity=0.297 Sum_probs=154.9
Q ss_pred CCCCCCcccceeeecccccccCC----CCCCHHHHHHh--HHHHHhcCCCEEEECCCCCCC-----------CCCCCCcc
Q 004353 499 KISPGTGTGFEILCQGFNWESHK----SGRWYMELKEK--ATELSSLGFSVIWLPPPTESV-----------SPEGYMPR 561 (759)
Q Consensus 499 ~~~~g~~~~yev~~~~F~Wds~~----~Gg~l~GI~ek--LdYLk~LGvtaIwL~PIf~s~-----------s~hGYdp~ 561 (759)
..++.+.++||+++++|.--.++ ..|+|.|+++. |+|||+||||+|.|+||+... .||||+|.
T Consensus 166 ~~p~~~~vIYE~HVr~fT~~~~~v~~~~rGTy~gl~~~~~i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~ 245 (697)
T COG1523 166 RIPWEDTVIYEAHVRDFTQLHPGVPEELRGTYLGLAEPVIIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPL 245 (697)
T ss_pred CCCccceEEEEeeecccccCCCCCchhhccceehhccccHHHHHHHhCCceEEEecceEEeccccccccccccccCCCcc
Confidence 34456666777777777631111 35789999999 999999999999999999643 47999999
Q ss_pred cCCccCCCCCCH-------HHHHHHHHHHHHcCCEEEeeeeeccccccccccCCCccccCCCCCCCCCcccCCCCCCCCC
Q 004353 562 DLYNLSSRYGNI-------DELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGR 634 (759)
Q Consensus 562 Dy~~Idp~~GT~-------edfk~LV~aaH~~GIkVIlDvV~NH~~~~~~~~~~~w~~~~~~~~w~~~~~~~~~~~f~~~ 634 (759)
.|++++++|.+. .|||.||+++|++||.||||||||||+.. +..+.=..|.+-.+-.++....+..+.+..
T Consensus 246 ~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILDVVfNHTae~--~~~g~t~~f~~id~~~Yyr~~~dg~~~N~T 323 (697)
T COG1523 246 NFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILDVVFNHTAEG--NELGPTLSFRGIDPNYYYRLDPDGYYSNGT 323 (697)
T ss_pred cccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEEEeccCcccc--cCcCcccccccCCcCceEEECCCCCeecCC
Confidence 999999999774 39999999999999999999999999853 111222233332222222222222222222
Q ss_pred CCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCccEEEEeccCcccHHHH-----HHHHHh------CCCcEEEE
Q 004353 635 GNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYV-----KDYLEA------TEPYFAVG 703 (759)
Q Consensus 635 g~~~~~~~~~~lpdLn~~np~Vr~~i~d~l~~Wi~e~GVDGFRlD~ak~f~~~~~-----~~~~~~------~p~~~lvG 703 (759)
|+ -..||.++|+||++|+|+++||+++++|||||||.|..+-.+-. ..+..+ .....++|
T Consensus 324 Gc---------GNtln~~hpmvrk~ivDsLrYWv~e~hVDGFRFDLa~~l~r~~~~~~~~~~l~~~~~~~p~l~~~kliA 394 (697)
T COG1523 324 GC---------GNTLNTEHPMVRKLIVDSLRYWVEEYHVDGFRFDLAGVLGRETMLFDINANLFLAGEGDPVLSGVKLIA 394 (697)
T ss_pred cc---------CcccccCChHHHHHHHHHHHHHHHHhCCCceeecchhhccccccccccCcchhhhccCCccccCceeee
Confidence 22 26799999999999999999999999999999999974332211 222221 12455888
Q ss_pred eecCCC--CcccCccC--cCc----hhhhHHHHHHHHhhcC
Q 004353 704 EYWDSL--SYTYGEMD--HNQ----DAHRQRIIDWINAASG 736 (759)
Q Consensus 704 E~w~~~--~y~~g~m~--Y~~----d~~~~~i~~yl~~~~~ 736 (759)
|-||-. .|..|... +.+ +.+++.+..|+.+..+
T Consensus 395 epwD~g~~gyqvG~Fpd~~~~aewng~~rD~vr~F~~G~~~ 435 (697)
T COG1523 395 EPWDIGPGGYQVGNFPDSPRWAEWNGRFRDDVRRFWRGDAG 435 (697)
T ss_pred cchhhcCCCcccccCCCccchhhhCCcccccccceeeCCCc
Confidence 888643 45555444 111 2556677777776544
No 29
>PLN02960 alpha-amylase
Probab=99.95 E-value=1.1e-27 Score=280.91 Aligned_cols=212 Identities=18% Similarity=0.228 Sum_probs=147.9
Q ss_pred cccceeeecccccccCCCCCCHHHHHHh-HHHHHhcCCCEEEECCCCCCC--CCCCCCcccCCccCCCCCCHHHHHHHHH
Q 004353 505 GTGFEILCQGFNWESHKSGRWYMELKEK-ATELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDVVN 581 (759)
Q Consensus 505 ~~~yev~~~~F~Wds~~~Gg~l~GI~ek-LdYLk~LGvtaIwL~PIf~s~--s~hGYdp~Dy~~Idp~~GT~edfk~LV~ 581 (759)
.++||++++.|. ..+.-|+|++++++ |+||++||||+|||+||++++ .+|||++.|||+|+++|||.++||+||+
T Consensus 396 ~vIYElHvg~~~--~e~~~gtf~~~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~yGtp~dfk~LVd 473 (897)
T PLN02960 396 LRIYECHVGISG--SEPKISSFKEFTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRFGTPDDFKRLVD 473 (897)
T ss_pred cEEEEEeccccc--CCCCCCCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcccccCCHHHHHHHHH
Confidence 445666665543 11123689999966 999999999999999999876 4699999999999999999999999999
Q ss_pred HHHHcCCEEEeeeeeccccccccccCCCccccCCCCCCCCCcccCCCCCCC-CCCCccCCCCCCCCCCCCCCCHHHHHHH
Q 004353 582 KFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQ-GRGNKSSGDNFHAAPNIDHSQDFVRKDI 660 (759)
Q Consensus 582 aaH~~GIkVIlDvV~NH~~~~~~~~~~~w~~~~~~~~w~~~~~~~~~~~f~-~~g~~~~~~~~~~lpdLn~~np~Vr~~i 660 (759)
+||++||+||||+|+||++.+.. ++ ...|++... .+|. +...+... .+.+.||+.+++||++|
T Consensus 474 ~aH~~GI~VILDvV~NH~~~d~~--~~-L~~FDG~~~----------~Yf~~~~~g~~~~---WG~~~fNy~~~eVr~fL 537 (897)
T PLN02960 474 EAHGLGLLVFLDIVHSYAAADEM--VG-LSLFDGSND----------CYFHSGKRGHHKR---WGTRMFKYGDHEVLHFL 537 (897)
T ss_pred HHHHCCCEEEEEecccccCCccc--cc-hhhcCCCcc----------ceeecCCCCccCC---CCCcccCCCCHHHHHHH
Confidence 99999999999999999997521 00 111222110 1121 11111111 13367899999999999
Q ss_pred HHHHHHHHHcCCccEEEEeccCccc-------------------------HHHHHH----HHHhCCCcEEEEeecCCCCc
Q 004353 661 KEWLCWLRNEIGYDGWRLDFVRGFW-------------------------GGYVKD----YLEATEPYFAVGEYWDSLSY 711 (759)
Q Consensus 661 ~d~l~~Wi~e~GVDGFRlD~ak~f~-------------------------~~~~~~----~~~~~p~~~lvGE~w~~~~y 711 (759)
++++++|+++|+|||||||++..|. ..|++. +.+..|++++|||-....+-
T Consensus 538 lsna~yWl~EyhIDGfR~DAV~sMlY~d~g~~~~~G~~~~~~n~~~d~~Ai~fL~~lN~~v~~~~P~vilIAEdss~~P~ 617 (897)
T PLN02960 538 LSNLNWWVTEYRVDGFQFHSLGSMLYTHNGFASFTGDLDEYCNQYVDRDALIYLILANEMLHQLHPNIITIAEDATFYPG 617 (897)
T ss_pred HHHHHHHHHHHCCCceeecccceeeeeccCccccCCcccccCCccCCchHHHHHHHHHHHHHhhCCCeEEEEECCCCCCC
Confidence 9999999999999999999986421 113333 33346899999998764221
Q ss_pred c-----cC--ccCcCch-hhhHHHHHHHHhh
Q 004353 712 T-----YG--EMDHNQD-AHRQRIIDWINAA 734 (759)
Q Consensus 712 ~-----~g--~m~Y~~d-~~~~~i~~yl~~~ 734 (759)
+ .| .++|..+ +..+.+..|+...
T Consensus 618 vt~P~~~GGLGFDYkwnmG~~~d~l~~l~~~ 648 (897)
T PLN02960 618 LCEPTSQGGLGFDYYVNLSPSEMWLSLLENV 648 (897)
T ss_pred ccccCCCCCCCcccccCCCcHHHHHHHHHhC
Confidence 1 22 1444433 3344566666663
No 30
>TIGR03852 sucrose_gtfA sucrose phosphorylase. In the forward direction, this enzyme uses phosphate to cleave sucrose into D-fructose + alpha-D-glucose 1-phosphate. Characterized representatives from Streptococcus mutans and Bifidobacterium adolescentis represent well-separated branches of a molecular phylogenetic tree. In S. mutans, the region including this gene has been associated with neighboring transporter genes and multiple sugar metabolism.
Probab=99.95 E-value=4.9e-28 Score=271.95 Aligned_cols=214 Identities=16% Similarity=0.223 Sum_probs=149.3
Q ss_pred eeecccccccCCCC-CCHHHHHHhHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCC
Q 004353 510 ILCQGFNWESHKSG-RWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGM 588 (759)
Q Consensus 510 v~~~~F~Wds~~~G-g~l~GI~ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GI 588 (759)
+.+.+|. |+.++| |+++|+.++ ||++ ||++|||+|+|+++++|||++.||+.|||+|||++||++|+++ |
T Consensus 3 v~lity~-Ds~g~glgdl~g~l~~--yL~~-~v~~i~LlPffps~sD~GYdv~DY~~VDP~~Gt~~Df~~L~~~-----~ 73 (470)
T TIGR03852 3 AMLITYA-DSLGKNLKELNKVLEN--YFKD-AVGGVHLLPFFPSTGDRGFAPMDYTEVDPAFGDWSDVEALSEK-----Y 73 (470)
T ss_pred ceEEEec-CCCCCChhhHHHHHHH--HHHH-hCCEEEECCCCcCCCCCCcCchhhceeCcccCCHHHHHHHHHh-----h
Confidence 4555665 554332 345555555 9999 7999999999999999999999999999999999999999997 8
Q ss_pred EEEeeeeecccccc---ccc--------cCCCccc-cCCCCCCCCCcc----------cCCCCC-----C-CCCCCccCC
Q 004353 589 KILGDVVLNHRCAH---YQN--------QNGVWNI-FGGRLNWDDRAV----------VADDPH-----F-QGRGNKSSG 640 (759)
Q Consensus 589 kVIlDvV~NH~~~~---~~~--------~~~~w~~-~~~~~~w~~~~~----------~~~~~~-----f-~~~g~~~~~ 640 (759)
+||+|+|+||||.. |++ +..+|+. +... |..... +...+. + .+.+.+...
T Consensus 74 kvmlDlV~NHtS~~h~WFq~~~~~~~~s~y~d~fi~~~~~--w~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~w~ 151 (470)
T TIGR03852 74 YLMFDFMINHISRQSEYYQDFLEKKDNSKYKDLFIRYKDF--WPNGRPTQEDVDLIYKRKDRAPYQEVTFADGSTEKVWN 151 (470)
T ss_pred hHHhhhcccccccchHHHHHHHhcCCCCCccceEEecccc--cCCCCccccccccccCCCCCCCCCceEEcCCCCeEEEc
Confidence 99999999999987 222 1234443 2110 111000 000111 1 111222233
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCccEEEEeccCcccH--------------HHHHHHHH--hCCCcEEEEe
Q 004353 641 DNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWG--------------GYVKDYLE--ATEPYFAVGE 704 (759)
Q Consensus 641 ~~~~~lpdLn~~np~Vr~~i~d~l~~Wi~e~GVDGFRlD~ak~f~~--------------~~~~~~~~--~~p~~~lvGE 704 (759)
.+...+||||+.||.|+++|.+++++|+ +.||||||+||+..+|+ ++++.+++ ..++++++||
T Consensus 152 tF~~~QpDLN~~np~v~e~i~~il~fwl-~~GvdgfRLDAv~~l~K~~Gt~c~~l~pet~~~l~~~r~~~~~~~~~ll~E 230 (470)
T TIGR03852 152 TFGEEQIDLDVTSETTKRFIRDNLENLA-EHGASIIRLDAFAYAVKKLGTNDFFVEPEIWELLDEVRDILAPTGAEILPE 230 (470)
T ss_pred cCCccccccCCCCHHHHHHHHHHHHHHH-HcCCCEEEEecchhhcccCCCCcccCChhHHHHHHHHHHHhccCCCEEEeH
Confidence 3457899999999999999999999999 89999999999954332 23344444 3478999999
Q ss_pred ecCCCCcc--cC---ccCcCch-----------hhhHHHHHHHHhhc
Q 004353 705 YWDSLSYT--YG---EMDHNQD-----------AHRQRIIDWINAAS 735 (759)
Q Consensus 705 ~w~~~~y~--~g---~m~Y~~d-----------~~~~~i~~yl~~~~ 735 (759)
++...+|. .| .|.|++- ....++.+|+....
T Consensus 231 ~~~~~~~~~~~gde~~mvY~F~lppl~l~al~~~~~~~l~~wl~~~p 277 (470)
T TIGR03852 231 IHEHYTIQFKIAEHGYYVYDFALPMLVLYSLYSGKTNRLADWLRKSP 277 (470)
T ss_pred hhhhcccccccccceeEEccCccchhhHHHhhccCHHHHHHHHHhCc
Confidence 98754442 23 4777743 34577788888765
No 31
>PRK13840 sucrose phosphorylase; Provisional
Probab=99.95 E-value=3.9e-28 Score=274.23 Aligned_cols=191 Identities=14% Similarity=0.089 Sum_probs=134.5
Q ss_pred eeeecccccccCCCCCCHHHHHHhHH-HHHhcCCCEEEECCCCC-CC-CCCCCCcccCCccCCCCCCHHHHHHHHHHHHH
Q 004353 509 EILCQGFNWESHKSGRWYMELKEKAT-ELSSLGFSVIWLPPPTE-SV-SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHD 585 (759)
Q Consensus 509 ev~~~~F~Wds~~~Gg~l~GI~ekLd-YLk~LGvtaIwL~PIf~-s~-s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~ 585 (759)
++.+-.|. |+.+ +|+|+||+++|| ||++| |++|||+|+|+ ++ +.+||++.||+.|||+|||++||++|++
T Consensus 4 ~~~litY~-Ds~~-~GdL~gl~~kLd~yL~~l-v~~vhllPff~psp~sD~GYdv~DY~~VDP~fGt~eDf~~L~~---- 76 (495)
T PRK13840 4 KVQLITYA-DRLG-DGGLKSLTALLDGRLDGL-FGGVHILPFFYPIDGADAGFDPIDHTKVDPRLGDWDDVKALGK---- 76 (495)
T ss_pred ceEEEEec-cCCC-CCCHhHHHHHHHHHHHHH-hCeEEECCCccCCCCCCCCCCCcChhhcCcccCCHHHHHHHHh----
Confidence 34555555 5554 479999999999 59999 99999999994 43 4799999999999999999999999995
Q ss_pred cCCEEEeeeeecccccc---ccc--------cCCCccccCCC--------CCCCCCcccCCCCCC-----CCCCCccCCC
Q 004353 586 VGMKILGDVVLNHRCAH---YQN--------QNGVWNIFGGR--------LNWDDRAVVADDPHF-----QGRGNKSSGD 641 (759)
Q Consensus 586 ~GIkVIlDvV~NH~~~~---~~~--------~~~~w~~~~~~--------~~w~~~~~~~~~~~f-----~~~g~~~~~~ 641 (759)
||+||+|+|+||||.. |++ +..+|+.+.+. .+|..-..+.....| ......+.|.
T Consensus 77 -giklmlDlV~NHtS~~h~WFqd~l~~~~~s~Y~D~fi~~d~~~~~~~~~~~~~~if~~~~g~~~~~~~~~~~~~~~~w~ 155 (495)
T PRK13840 77 -THDIMADLIVNHMSAESPQFQDVLAKGEASEYWPMFLTKDKVFPDGATEEDLAGIYRPRPGLPFTTYTLADGKTRLVWT 155 (495)
T ss_pred -CCeEEEEECCCcCCCCcHHHHHHHHhCCCCCccCeEEECCCCCcCCCCCcccccccCCCCCCcccceEecCCCceEEec
Confidence 9999999999999987 222 12344443221 011100000001111 1100111222
Q ss_pred -CCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCccEEEEeccCcccH-------------HHHHHHHHhC--CCcEEEEee
Q 004353 642 -NFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWG-------------GYVKDYLEAT--EPYFAVGEY 705 (759)
Q Consensus 642 -~~~~lpdLn~~np~Vr~~i~d~l~~Wi~e~GVDGFRlD~ak~f~~-------------~~~~~~~~~~--p~~~lvGE~ 705 (759)
....+||||++||+|+++|.+++++|+ +.||||||+|++..+|+ ++++.+++.. .+..+|||+
T Consensus 156 tF~~~QpDLN~~NP~V~~~i~~il~fwl-~~GVDgfRLDAv~~l~K~~gt~c~~~pe~~~~l~~lr~~~~~~~~~ll~Ei 234 (495)
T PRK13840 156 TFTPQQIDIDVHSAAGWEYLMSILDRFA-ASHVTLIRLDAAGYAIKKAGTSCFMIPETFEFIDRLAKEARARGMEVLVEI 234 (495)
T ss_pred cCCcccceeCCCCHHHHHHHHHHHHHHH-HCCCCEEEEechhhhhcCCCCCcCCChHHHHHHHHHHHHhhhcCCEEEEeC
Confidence 346899999999999999999999999 78999999999965443 2444444322 257789999
Q ss_pred cCC
Q 004353 706 WDS 708 (759)
Q Consensus 706 w~~ 708 (759)
|..
T Consensus 235 ~~y 237 (495)
T PRK13840 235 HSY 237 (495)
T ss_pred ccc
Confidence 874
No 32
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=99.95 E-value=2.8e-27 Score=277.35 Aligned_cols=170 Identities=22% Similarity=0.301 Sum_probs=129.2
Q ss_pred CCHHHHH-HhHHHHHhcCCCEEEECCCCCCC--CCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCEEEeeeeecccc
Q 004353 524 RWYMELK-EKATELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRC 600 (759)
Q Consensus 524 g~l~GI~-ekLdYLk~LGvtaIwL~PIf~s~--s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIkVIlDvV~NH~~ 600 (759)
++++++. ++|+||++||||+|||+||+++. .+|||++.|||+++++|||.++||+||++||++||+||||+|+||++
T Consensus 247 gty~~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~~~Gtp~dlk~LVd~aH~~GI~VilDvV~nH~~ 326 (758)
T PLN02447 247 NSYREFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSSRSGTPEDLKYLIDKAHSLGLRVLMDVVHSHAS 326 (758)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEecccccc
Confidence 5688864 56999999999999999999987 47999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCccccCCCCCCCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCccEEEEec
Q 004353 601 AHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDF 680 (759)
Q Consensus 601 ~~~~~~~~~w~~~~~~~~w~~~~~~~~~~~f~~~g~~~~~~~~~~lpdLn~~np~Vr~~i~d~l~~Wi~e~GVDGFRlD~ 680 (759)
.+... + ...|++. ...+|...... .....+...+|+.+++||++|++++++|+++|||||||||+
T Consensus 327 ~~~~~--g-l~~fDg~----------~~~Yf~~~~~g--~~~~w~~~~~N~~~~eVr~fLl~~~~~Wl~ey~IDGfRfDa 391 (758)
T PLN02447 327 KNTLD--G-LNGFDGT----------DGSYFHSGPRG--YHWLWDSRLFNYGNWEVLRFLLSNLRWWLEEYKFDGFRFDG 391 (758)
T ss_pred ccccc--c-ccccCCC----------CccccccCCCC--CcCcCCCceecCCCHHHHHHHHHHHHHHHHHhCcccccccc
Confidence 64211 1 1112110 11223211110 00111234799999999999999999999999999999999
Q ss_pred cCccc------------------------------HHHHHHHHHhCCCcEEEEeecCC
Q 004353 681 VRGFW------------------------------GGYVKDYLEATEPYFAVGEYWDS 708 (759)
Q Consensus 681 ak~f~------------------------------~~~~~~~~~~~p~~~lvGE~w~~ 708 (759)
|++|. ....+.+.+..|++++|||.+.+
T Consensus 392 V~smlY~~hg~~~~f~~~~~~~~g~~~d~~a~~fL~~~N~~i~~~~p~~~~IAEd~s~ 449 (758)
T PLN02447 392 VTSMLYHHHGLQMAFTGNYNEYFGMATDVDAVVYLMLANDLLHGLYPEAVTIAEDVSG 449 (758)
T ss_pred hhhhhccccCcccccccCcccccCCccChHHHHHHHHHHHHHHHhCCCeEEEEEcCCC
Confidence 97552 12222334456999999998875
No 33
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=99.93 E-value=2.7e-25 Score=261.88 Aligned_cols=197 Identities=21% Similarity=0.268 Sum_probs=148.4
Q ss_pred CCCHHHHHHhHHHHHhcCCCEEEECCCCCCC--CCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCEEEeeeeecccc
Q 004353 523 GRWYMELKEKATELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRC 600 (759)
Q Consensus 523 Gg~l~GI~ekLdYLk~LGvtaIwL~PIf~s~--s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIkVIlDvV~NH~~ 600 (759)
|++|++++++|+||++|||++|||+||+++. ++|||++.||+.|||+|||.++|++||++||++||+||+|+|+|||+
T Consensus 12 ~~tf~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVpNH~a 91 (825)
T TIGR02401 12 GFTFDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVPNHMA 91 (825)
T ss_pred CCCHHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecccccc
Confidence 7899999999999999999999999999874 67999999999999999999999999999999999999999999999
Q ss_pred ccc------cc--cCCCccccCCC--CCCCCCc------------------------cc----------CCCCCCCC---
Q 004353 601 AHY------QN--QNGVWNIFGGR--LNWDDRA------------------------VV----------ADDPHFQG--- 633 (759)
Q Consensus 601 ~~~------~~--~~~~w~~~~~~--~~w~~~~------------------------~~----------~~~~~f~~--- 633 (759)
.++ .+ ++|.-+.+.++ ++|.... .. +....|+-
T Consensus 92 ~~~~~n~wf~dvl~~g~~S~y~~~Fdidw~~~~~~gkvllP~Lg~~y~~~l~~g~l~l~~d~~~~~~l~y~~~~~Pi~p~ 171 (825)
T TIGR02401 92 VHLEQNPWWWDVLKNGPSSAYAEYFDIDWDPLGGDGKLLLPILGDQYGAVLDRGEIKLRFDGDGTLALRYYDHRLPLAPG 171 (825)
T ss_pred cccccChHHHHHHHhCCCCCccCceEEeCCCCCCCCceeecccCchhhhHHhcCceeeeecCCCceeEEecCccCCcCcc
Confidence 752 11 11111111111 1222100 00 00000100
Q ss_pred -------------------------------------CCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCccEE
Q 004353 634 -------------------------------------RGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGW 676 (759)
Q Consensus 634 -------------------------------------~g~~~~~~~~~~lpdLn~~np~Vr~~i~d~l~~Wi~e~GVDGF 676 (759)
.-+|..+.+...|+.|+.++|+|.++...++..|+++.-|||+
T Consensus 172 ty~~il~~~~~~~~~~~l~~ll~~Q~yRL~~Wr~a~~~inYRrFf~i~~L~~lr~E~~~Vf~~~h~~i~~lv~~g~vdGl 251 (825)
T TIGR02401 172 TLPELEVLEDVPGDGDALKKLLERQHYRLTWWRVAAGEINYRRFFDINDLAGVRVEDPAVFDATHRLVLELVAEGLVDGL 251 (825)
T ss_pred chhhhhhhccccCChhhHHHHHHHHHHHhhhhhccccccCcccccCccccccccCCCHHHHHHHHHHHHHHHHcCCCceE
Confidence 0122233456789999999999999999999999966569999
Q ss_pred EEeccCcc--cHHHHHHHHHhCC-CcEEEEe-ecCCC-----Cc-ccCccCcC
Q 004353 677 RLDFVRGF--WGGYVKDYLEATE-PYFAVGE-YWDSL-----SY-TYGEMDHN 719 (759)
Q Consensus 677 RlD~ak~f--~~~~~~~~~~~~p-~~~lvGE-~w~~~-----~y-~~g~m~Y~ 719 (759)
|+|+++++ +..+++.++++.+ +.++|.| ++... .| ..|.+.|.
T Consensus 252 RIDh~dGL~dP~~Yl~rLr~~~~~~~yivvEKIl~~~E~Lp~~W~v~GTtGYd 304 (825)
T TIGR02401 252 RIDHIDGLADPEGYLRRLRELVGPARYLVVEKILAPGEHLPADWPVDGTTGYD 304 (825)
T ss_pred EeccccccCChHHHHHHHHHhcCCCceEEEEEeccCCCcCCCCCCcCcccCCh
Confidence 99999999 7779999977765 4999999 77652 25 36777775
No 34
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=99.92 E-value=1.5e-24 Score=249.20 Aligned_cols=191 Identities=22% Similarity=0.291 Sum_probs=140.7
Q ss_pred CCCcccceeeecccccccCCCCCCHHHHHHhHHHHHhcCCCEEEECCCCCCC--CCCCCCcccCCccCCCCCCHHHHHHH
Q 004353 502 PGTGTGFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDV 579 (759)
Q Consensus 502 ~g~~~~yev~~~~F~Wds~~~Gg~l~GI~ekLdYLk~LGvtaIwL~PIf~s~--s~hGYdp~Dy~~Idp~~GT~edfk~L 579 (759)
+...++||+++++|.++ ..-++++..+++|+||++||||+|.|+||.+.+ .+|||+++-||++..+|||+++||+|
T Consensus 142 ~e~~vIYElHvGs~~~~--~~~~~~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~g~yAp~sryGtPedfk~f 219 (628)
T COG0296 142 WEPIVIYELHVGSFTPD--RFLGYFELAIELLPYLKELGITHIELMPVAEHPGDRSWGYQGTGYYAPTSRYGTPEDFKAL 219 (628)
T ss_pred CCCceEEEEEeeeccCC--CCcCHHHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCCCcceeccccccCCCHHHHHHH
Confidence 34567899999999863 334679999999999999999999999999887 46999999999999999999999999
Q ss_pred HHHHHHcCCEEEeeeeeccccccccccCCCccccCCCCCCCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCHHHHHH
Q 004353 580 VNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKD 659 (759)
Q Consensus 580 V~aaH~~GIkVIlDvV~NH~~~~~~~~~~~w~~~~~~~~w~~~~~~~~~~~f~~~g~~~~~~~~~~lpdLn~~np~Vr~~ 659 (759)
|++||++||.||||+|+||.+.+. + .-..|++..-+.. . ++. .+... .|. ..-.|...++||.+
T Consensus 220 VD~aH~~GIgViLD~V~~HF~~d~---~-~L~~fdg~~~~e~-~----~~~---~~~~~---~Wg-~~i~~~gr~EVR~F 283 (628)
T COG0296 220 VDAAHQAGIGVILDWVPNHFPPDG---N-YLARFDGTFLYEH-E----DPR---RGEHT---DWG-TAIFNYGRNEVRNF 283 (628)
T ss_pred HHHHHHcCCEEEEEecCCcCCCCc---c-hhhhcCCcccccc-C----Ccc---cccCC---Ccc-cchhccCcHHHHHH
Confidence 999999999999999999999741 0 0112222111100 0 000 00000 111 12234458999999
Q ss_pred HHHHHHHHHHcCCccEEEEeccCcccH------------------------HHHHHH----HHhCCCcEEEEeecCCCC
Q 004353 660 IKEWLCWLRNEIGYDGWRLDFVRGFWG------------------------GYVKDY----LEATEPYFAVGEYWDSLS 710 (759)
Q Consensus 660 i~d~l~~Wi~e~GVDGFRlD~ak~f~~------------------------~~~~~~----~~~~p~~~lvGE~w~~~~ 710 (759)
|++.+.+|+++|+|||+|+|||..|+. ++.+.. ....|..+.|+|-|.+-.
T Consensus 284 ll~nal~Wl~~yHiDGlRvDAV~smly~d~~~~~~~~~~n~~ggr~n~~a~efl~~~n~~i~~~~pg~~~iaeestd~~ 362 (628)
T COG0296 284 LLANALYWLEEYHIDGLRVDAVASMLYLDYSRAEGEWVPNEYGGRENLEAAEFLRNLNSLIHEEEPGAMTIAEESTDDP 362 (628)
T ss_pred HHHHHHHHHHHhCCcceeeehhhhhhccchhhhhhcccccccCCcccHHHHHHhhhhhhhhcccCCCceeeeeeccCCC
Confidence 999999999999999999999964422 122221 223477999999998743
No 35
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=99.91 E-value=6.8e-24 Score=241.48 Aligned_cols=208 Identities=15% Similarity=0.088 Sum_probs=148.1
Q ss_pred HHHHhHHHHHhcCCCEEEECCCCCC---------CC-CCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCEEEeeeeec
Q 004353 528 ELKEKATELSSLGFSVIWLPPPTES---------VS-PEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLN 597 (759)
Q Consensus 528 GI~ekLdYLk~LGvtaIwL~PIf~s---------~s-~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIkVIlDvV~N 597 (759)
|-..-.+||++|||++|||+|++++ +. .+|||+.| +.|||.|||++||++|+++||++||+||+|+|+|
T Consensus 75 ~~~~~wdyL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d-~~Idp~~GT~eDf~~L~~~Ah~~G~~vi~DlVpn 153 (688)
T TIGR02455 75 ADDALWKALSEIGVQGIHNGPIKLSGGIRGREFTPSIDGNFDRIS-FDIDPLLGSEEELIQLSRMAAAHNAITIDDIIPA 153 (688)
T ss_pred cChHHHHHHHHhCCCEEEeCcceecccccccCCCCCCCCCCCccc-CccCcccCCHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 4455679999999999999999999 55 69999999 5999999999999999999999999999999999
Q ss_pred ccccc--ccc------cCCCcc-----------ccCC-CCCCCCCcc--------------cCC--CCCC--CC------
Q 004353 598 HRCAH--YQN------QNGVWN-----------IFGG-RLNWDDRAV--------------VAD--DPHF--QG------ 633 (759)
Q Consensus 598 H~~~~--~~~------~~~~w~-----------~~~~-~~~w~~~~~--------------~~~--~~~f--~~------ 633 (759)
|||.. |+. +++.|| .+.+ ...|+.... +.. ...| .+
T Consensus 154 HTs~ghdF~lAr~~~~~Y~g~Y~mvei~~~~W~vwpd~~~~~~~~~l~~~~~~~L~~~g~i~~~l~rviF~~pg~e~s~W 233 (688)
T TIGR02455 154 HTGKGADFRLAELAHGDYPGLYHMVEIREEDWALLPEVPAGRDAVNLLPAQCDELKAKHYIVGQLQRVIFFEPGIKDTDW 233 (688)
T ss_pred CCCCCcchHHHhhcCCCCCCceeeccccccccccCCCCCcccccccccHHHHHHHhhccCcccccccceecCCCcccCCc
Confidence 99986 431 233333 2211 111111100 000 0112 11
Q ss_pred -------------CCCccCCCCCCCCCCCCCCCHH--HHHHHH-HHHHHHHHcCCccEEEEeccCc--------------
Q 004353 634 -------------RGNKSSGDNFHAAPNIDHSQDF--VRKDIK-EWLCWLRNEIGYDGWRLDFVRG-------------- 683 (759)
Q Consensus 634 -------------~g~~~~~~~~~~lpdLn~~np~--Vr~~i~-d~l~~Wi~e~GVDGFRlD~ak~-------------- 683 (759)
+.+++...++..+|+||+.||. ||+.|. +++++|+ +.|++|||+|++..
T Consensus 234 t~d~~v~g~dG~~Rrw~Y~H~F~~~QPdLNw~dPs~av~~~~~gdal~~w~-~lG~~GfRLDAvpfLg~e~~~~~~~~~e 312 (688)
T TIGR02455 234 SATGEITGVDGKTRRWVYLHYFKEGQPSLNWLDPTFAAQQLIIGDALHAID-CLGARGLRLDANGFLGVERRAEGTAWSE 312 (688)
T ss_pred eecccccCCCccchhhhhhhhccCCCCccCccCccHHHHHHHHHHHHHHHH-HhccccceeccccceeeecCCCCCCCCc
Confidence 1112222346899999999999 999999 8999999 99999999999641
Q ss_pred ---ccHHHHHHHH--HhCCCcEEEEeecCCCCcccCccCcCchhhhHHHHHHHHhhcCCCCCCceeeehhhhhccc
Q 004353 684 ---FWGGYVKDYL--EATEPYFAVGEYWDSLSYTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSVSI 754 (759)
Q Consensus 684 ---f~~~~~~~~~--~~~p~~~lvGE~w~~~~y~~g~m~Y~~d~~~~~i~~yl~~~~~~~~~fDf~l~~~l~~A~~ 754 (759)
|....++-+. ..+++.++++|.-.. .+.+.+|+.. +..-.|||++...+..|+.
T Consensus 313 ~h~ll~~~r~~l~~~~r~~Gg~ll~E~nl~---------------~~d~~~~~g~--~~dl~~dF~t~p~~~~AL~ 371 (688)
T TIGR02455 313 GHPLSLTGNQLIAGAIRKAGGFSFQELNLT---------------IDDIAAMSHG--GADLSYDFITRPAYHHALL 371 (688)
T ss_pred cCHHHHHHHHHHHHhhhcCCeeEeeeccCC---------------HHHHHHHhCC--CcceeecccccHHHHHHHH
Confidence 2233333333 235789999997543 4467777773 5566899988887776654
No 36
>smart00642 Aamy Alpha-amylase domain.
Probab=99.90 E-value=7.4e-24 Score=209.68 Aligned_cols=92 Identities=33% Similarity=0.523 Sum_probs=84.0
Q ss_pred eeecccccccCCCCCCHHHHHHhHHHHHhcCCCEEEECCCCCCC----CCCCCCcccCCccCCCCCCHHHHHHHHHHHHH
Q 004353 510 ILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESV----SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHD 585 (759)
Q Consensus 510 v~~~~F~Wds~~~Gg~l~GI~ekLdYLk~LGvtaIwL~PIf~s~----s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~ 585 (759)
++++.|.|.....+|+|+||+++|+||++|||++|||+||+++. ++|||++.||+.++|+|||.++|++||++||+
T Consensus 2 i~~~~F~~~~~~~~G~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~ 81 (166)
T smart00642 2 IYPDRFADGNGDGGGDLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHA 81 (166)
T ss_pred eeeccccCCCCCCCcCHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHH
Confidence 34555555555558899999999999999999999999999988 68999999999999999999999999999999
Q ss_pred cCCEEEeeeeeccccc
Q 004353 586 VGMKILGDVVLNHRCA 601 (759)
Q Consensus 586 ~GIkVIlDvV~NH~~~ 601 (759)
+||+||+|+|+||++.
T Consensus 82 ~Gi~vilD~V~NH~~~ 97 (166)
T smart00642 82 RGIKVILDVVINHTSD 97 (166)
T ss_pred CCCEEEEEECCCCCCC
Confidence 9999999999999994
No 37
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=99.88 E-value=4.2e-23 Score=235.46 Aligned_cols=168 Identities=29% Similarity=0.430 Sum_probs=128.3
Q ss_pred CcccceeeecccccccCC---CCCCHHHHHHh-HHHHHhcCCCEEEECCCCCC-CC--CCCCCcccCCccCCCCCCHH--
Q 004353 504 TGTGFEILCQGFNWESHK---SGRWYMELKEK-ATELSSLGFSVIWLPPPTES-VS--PEGYMPRDLYNLSSRYGNID-- 574 (759)
Q Consensus 504 ~~~~yev~~~~F~Wds~~---~Gg~l~GI~ek-LdYLk~LGvtaIwL~PIf~s-~s--~hGYdp~Dy~~Idp~~GT~e-- 574 (759)
+-.+||.++++|.-+.++ -|| |++.++| |++||.||+|+|+|+||++. .. .+||.|.+|+++-.+|||.+
T Consensus 229 sL~IYE~HVrgfS~~E~~v~~~~g-Y~~FteKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFapssrYgt~~s~ 307 (757)
T KOG0470|consen 229 SLRIYELHVRGFSSHESKVNTRGG-YLGFTEKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPSSRYGTPESP 307 (757)
T ss_pred heEEEEEeeccccCCCCccccccc-hhhhhhhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEeecccccccCCCcc
Confidence 445677777666622221 245 9999999 99999999999999999998 33 59999999999999999999
Q ss_pred ----HHHHHHHHHHHcCCEEEeeeeeccccccccccCCCccccCCCCCCCCCcccCCCCCCCCCCCccCCCCCCCCCCCC
Q 004353 575 ----ELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNID 650 (759)
Q Consensus 575 ----dfk~LV~aaH~~GIkVIlDvV~NH~~~~~~~~~~~w~~~~~~~~w~~~~~~~~~~~f~~~g~~~~~~~~~~lpdLn 650 (759)
|||.||++||..||-|+||||+||++.+ .....+.|+|..+ ..+|+.... .......-.-||
T Consensus 308 ~ri~efK~lVd~aHs~GI~VlLDVV~sHaa~n---~~d~l~~fdGid~---------~~Yf~~~~r--~~h~~~~~r~fn 373 (757)
T KOG0470|consen 308 CRINEFKELVDKAHSLGIEVLLDVVHSHAAKN---SKDGLNMFDGIDN---------SVYFHSGPR--GYHNSWCSRLFN 373 (757)
T ss_pred cchHHHHHHHHHHhhCCcEEehhhhhhhcccC---cCCcchhccCcCC---------ceEEEeCCc--cccccccccccc
Confidence 9999999999999999999999999962 3333344544211 112221110 001122336689
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCccEEEEeccCcccH
Q 004353 651 HSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWG 686 (759)
Q Consensus 651 ~~np~Vr~~i~d~l~~Wi~e~GVDGFRlD~ak~f~~ 686 (759)
+++++|+++|++.++||+.||+|||||||.+.+|..
T Consensus 374 ~~~~~V~rflL~nLr~WVtEY~vDGFRFD~~ssm~~ 409 (757)
T KOG0470|consen 374 YNHPVVLRFLLSNLRWWVTEYHVDGFRFDLVSSMLY 409 (757)
T ss_pred CCCHHHHHHHHHHHHHHHHheeccceEEcchhhhhh
Confidence 999999999999999999999999999999975533
No 38
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=99.84 E-value=3.6e-20 Score=219.63 Aligned_cols=80 Identities=24% Similarity=0.368 Sum_probs=77.2
Q ss_pred CCCHHHHHHhHHHHHhcCCCEEEECCCCCCC--CCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCEEEeeeeecccc
Q 004353 523 GRWYMELKEKATELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRC 600 (759)
Q Consensus 523 Gg~l~GI~ekLdYLk~LGvtaIwL~PIf~s~--s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIkVIlDvV~NH~~ 600 (759)
|.+|++++++|+||++|||++|||+||+++. ++|||++.||+.|||+||+.++|++||++||++||+||+|+|+|||+
T Consensus 16 ~~tf~~~~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~NH~~ 95 (879)
T PRK14511 16 GFTFDDAAELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVPNHMA 95 (879)
T ss_pred CCCHHHHHHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecccccc
Confidence 6789999999999999999999999999975 78999999999999999999999999999999999999999999999
Q ss_pred cc
Q 004353 601 AH 602 (759)
Q Consensus 601 ~~ 602 (759)
.+
T Consensus 96 ~~ 97 (879)
T PRK14511 96 VG 97 (879)
T ss_pred Cc
Confidence 75
No 39
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=99.77 E-value=3.2e-18 Score=213.76 Aligned_cols=79 Identities=20% Similarity=0.288 Sum_probs=76.2
Q ss_pred CCCHHHHHHhHHHHHhcCCCEEEECCCCCCC--CCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCEEEeeeeecccc
Q 004353 523 GRWYMELKEKATELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRC 600 (759)
Q Consensus 523 Gg~l~GI~ekLdYLk~LGvtaIwL~PIf~s~--s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIkVIlDvV~NH~~ 600 (759)
+++|++++++|+||++|||++|||+|||++. ++|||++.||+.|||.|||.++|++||++||++||+||||+|+|||+
T Consensus 754 ~~tf~~~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV~NH~~ 833 (1693)
T PRK14507 754 DFTFADAEAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIVPNHMG 833 (1693)
T ss_pred CCCHHHHHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecccccC
Confidence 7889999999999999999999999999964 67999999999999999999999999999999999999999999999
Q ss_pred c
Q 004353 601 A 601 (759)
Q Consensus 601 ~ 601 (759)
.
T Consensus 834 ~ 834 (1693)
T PRK14507 834 V 834 (1693)
T ss_pred C
Confidence 4
No 40
>PLN03244 alpha-amylase; Provisional
Probab=99.71 E-value=5.2e-17 Score=188.58 Aligned_cols=158 Identities=18% Similarity=0.176 Sum_probs=110.5
Q ss_pred ccceeeecccccccCCCCCCHHHHHHhHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHH
Q 004353 506 TGFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHD 585 (759)
Q Consensus 506 ~~yev~~~~F~Wds~~~Gg~l~GI~ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~ 585 (759)
.+||.+++-.. . ..-=++++..+++ +++||+++++|||.+|||.||++||+
T Consensus 402 rIYE~HvGms~-~-e~kv~ty~eF~~~---------------------------vt~fFApssRYGTPeDLK~LVD~aH~ 452 (872)
T PLN03244 402 RIYECHVGISG-S-EPKISSFEEFTEK---------------------------VTNFFAASSRYGTPDDFKRLVDEAHG 452 (872)
T ss_pred eEEEEEeeecC-C-CCCcccHHHHhhc---------------------------cCcccccCcccCCHHHHHHHHHHHHH
Confidence 47888887654 1 1112567777775 56899999999999999999999999
Q ss_pred cCCEEEeeeeeccccccccccCCCccccCCCCCCCCCcccCCCCCCCCCC-CccCCCCCCCCCCCCCCCHHHHHHHHHHH
Q 004353 586 VGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRG-NKSSGDNFHAAPNIDHSQDFVRKDIKEWL 664 (759)
Q Consensus 586 ~GIkVIlDvV~NH~~~~~~~~~~~w~~~~~~~~w~~~~~~~~~~~f~~~g-~~~~~~~~~~lpdLn~~np~Vr~~i~d~l 664 (759)
+||+||||+|+||++.+.. .+ -..|++.. ..+|.... .+...+ +...+|+.+++|+++|++.+
T Consensus 453 ~GI~VILDvV~NH~~~d~~--~G-L~~fDGt~----------~~Yf~~~~~g~~~~W---Gs~~fnyg~~EVr~FLLsna 516 (872)
T PLN03244 453 LGLLVFLDIVHSYAAADEM--VG-LSLFDGSN----------DCYFHTGKRGHHKHW---GTRMFKYGDLDVLHFLISNL 516 (872)
T ss_pred CCCEEEEEecCccCCCccc--cc-hhhcCCCc----------cceeccCCCCccCCC---CCceecCCCHHHHHHHHHHH
Confidence 9999999999999996410 01 11122210 01222111 111111 23578999999999999999
Q ss_pred HHHHHcCCccEEEEeccCccc-----------------------------HHHHHHHHHhCCCcEEEEeecCC
Q 004353 665 CWLRNEIGYDGWRLDFVRGFW-----------------------------GGYVKDYLEATEPYFAVGEYWDS 708 (759)
Q Consensus 665 ~~Wi~e~GVDGFRlD~ak~f~-----------------------------~~~~~~~~~~~p~~~lvGE~w~~ 708 (759)
+||+++|+|||||||++..|. ......+.+..|++++|||-..+
T Consensus 517 ~yWleEyhIDGFRfDaVtSMLY~d~G~~~f~g~~~~y~n~~~d~dAv~fL~laN~~ih~~~P~~itIAEDsS~ 589 (872)
T PLN03244 517 NWWITEYQIDGFQFHSLASMIYTHNGFASFNGDLDDYCNQYVDKDALMYLILANEILHALHPKIITIAEDATY 589 (872)
T ss_pred HHHHHHhCcCcceeecchhheeeccccccccCCccccccccCCchHHHHHHHHHHHHHHhCCCeEEEEEcCCC
Confidence 999999999999999984221 22223344456899999997765
No 41
>KOG2212 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=99.71 E-value=4.6e-17 Score=171.90 Aligned_cols=188 Identities=29% Similarity=0.497 Sum_probs=139.4
Q ss_pred eeecccccccCCCCCCHHHHHHhHHHHHhcCCCEEEECCCCCCCCC--------CCCCcccCCccCCCCCCHHHHHHHHH
Q 004353 510 ILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESVSP--------EGYMPRDLYNLSSRYGNIDELKDVVN 581 (759)
Q Consensus 510 v~~~~F~Wds~~~Gg~l~GI~ekLdYLk~LGvtaIwL~PIf~s~s~--------hGYdp~Dy~~Idp~~GT~edfk~LV~ 581 (759)
-+++.|+| +|-.-..|+-..|+--|+.+|+++|+.++... .+|+|.. |+++.|-|+++||+.||+
T Consensus 30 tmVHLFEW------KW~DiA~ECE~FL~p~G~~gVQVSP~nEn~~~~~~~rPWWeRYQPvS-YKL~tRSGNE~eF~dMV~ 102 (504)
T KOG2212|consen 30 TIVHLFEW------KWVDIALECERFLAPKGFGGVQVSPPNENVAIHNPFRPWWERYQPVS-YKLCTRSGNEDEFRDMVT 102 (504)
T ss_pred eEEEEEEe------ehHHHHHHHHhhcCcCCcceeeecCcchhhhhcCCCCCceeecccce-EEeeccCCCHHHHHHHHH
Confidence 47899998 45556667777999999999999999986521 5799996 899999999999999999
Q ss_pred HHHHcCCEEEeeeeecccccc-ccc----cCCCccccCCCCCCCCCcccCCCCCCCCCCCc------cCCC--------C
Q 004353 582 KFHDVGMKILGDVVLNHRCAH-YQN----QNGVWNIFGGRLNWDDRAVVADDPHFQGRGNK------SSGD--------N 642 (759)
Q Consensus 582 aaH~~GIkVIlDvV~NH~~~~-~~~----~~~~w~~~~~~~~w~~~~~~~~~~~f~~~g~~------~~~~--------~ 642 (759)
+|.+.|+|+++|+|+|||+.. +.. .-|.....+. -..+.+|+....|+...+. ..+. .
T Consensus 103 RCN~VGVRiyVDvv~NHM~g~~~~G~~vGt~Gs~~~p~s---~SfPGVPYs~~DFn~~kc~~~~~~i~~~Nda~~V~~C~ 179 (504)
T KOG2212|consen 103 RCNNVGVRIYVDAVINHMCGNAVSGGTVGTCGSYFNPGS---RSFPGVPYSGWDFNDGKCKTGSGDIENYNDATQVRDCR 179 (504)
T ss_pred HhhccceEEEehhhhhhhccccccCCccccccCccCCCC---CCCCCCCcccccCCCcccCCCccccccccchhhhhcce
Confidence 999999999999999999963 110 0111111110 0112233333344432111 1111 2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHcCCccEEEEeccCcccHHHHHHHHHhC-----------CCcEEEEeecCC
Q 004353 643 FHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYLEAT-----------EPYFAVGEYWDS 708 (759)
Q Consensus 643 ~~~lpdLn~~np~Vr~~i~d~l~~Wi~e~GVDGFRlD~ak~f~~~~~~~~~~~~-----------p~~~lvGE~w~~ 708 (759)
+-+|-|||+.+..||..|++.+.+++ +.||.|||.|++||||++-++.+.... ...|++-|+-+.
T Consensus 180 LVGL~DL~Q~s~~Vr~Kive~L~hLi-dlGVAGFRvDAsKHMwp~Di~~I~~~l~nLnsD~f~s~srpfi~qEVID~ 255 (504)
T KOG2212|consen 180 LVGLLDLAQGSDYVRSKIAEYLNHLI-DIGVAGFRVDASKHMWPGDIKAILDKLHNLNSDWFPSGSKPFIYQEVIDL 255 (504)
T ss_pred EeecchhhhcchHHHHHHHHHHHHHH-HhccceeeechhhccChHHHHHHHHHHhhcccccccCCCCceehhhhhhc
Confidence 56889999999999999999999999 999999999999999999888776531 347888888764
No 42
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=99.68 E-value=3.4e-16 Score=178.73 Aligned_cols=80 Identities=24% Similarity=0.387 Sum_probs=76.5
Q ss_pred CCCHHHHHHhHHHHHhcCCCEEEECCCCCCC--CCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCEEEeeeeecccc
Q 004353 523 GRWYMELKEKATELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRC 600 (759)
Q Consensus 523 Gg~l~GI~ekLdYLk~LGvtaIwL~PIf~s~--s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIkVIlDvV~NH~~ 600 (759)
|=+|......||||++|||.++|++|||.+. |.||||+.|+..|||.+|+.+.|..|++++|++||.+|+|+|+|||+
T Consensus 15 gFtF~~A~~~l~yl~~LGIShLY~SPIftA~pGStHGYDVvD~t~InPeLGG~egl~rLvaalk~~GlGlI~DIVPNHMa 94 (889)
T COG3280 15 GFTFADARALLDYLADLGISHLYLSPIFTARPGSTHGYDVVDPTEINPELGGEEGLERLVAALKSRGLGLIVDIVPNHMA 94 (889)
T ss_pred CCCHHHHHHhhHHHHhcCchheeccchhhcCCCCCCCccCCCccccChhhcChHHHHHHHHHHHhcCCceEEEecccchh
Confidence 5569999999999999999999999999876 67999999999999999999999999999999999999999999999
Q ss_pred cc
Q 004353 601 AH 602 (759)
Q Consensus 601 ~~ 602 (759)
..
T Consensus 95 v~ 96 (889)
T COG3280 95 VG 96 (889)
T ss_pred cc
Confidence 75
No 43
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=99.41 E-value=2.9e-13 Score=165.52 Aligned_cols=80 Identities=19% Similarity=0.280 Sum_probs=75.4
Q ss_pred CCCHHHHHHhHHHHHhcCCCEEEECCCC-CCCCCCCCCcccCCccCCCCC----CHHHHHHHHHHHHHc-CCEEEeeeee
Q 004353 523 GRWYMELKEKATELSSLGFSVIWLPPPT-ESVSPEGYMPRDLYNLSSRYG----NIDELKDVVNKFHDV-GMKILGDVVL 596 (759)
Q Consensus 523 Gg~l~GI~ekLdYLk~LGvtaIwL~PIf-~s~s~hGYdp~Dy~~Idp~~G----T~edfk~LV~aaH~~-GIkVIlDvV~ 596 (759)
-|.|....++|+||++||+|.|||+||+ .+.++|.|++.||+.|||.|| +.+||++||+++|++ ||++|+|+|+
T Consensus 128 mG~~~~w~~~L~~ik~lGyN~IhftPI~~~G~SnS~Ysi~Dyl~idP~~~~~~~~~~d~~~lV~~~h~~~Gm~~ilDvV~ 207 (1464)
T TIGR01531 128 LGPLSEWEPRLRVAKEKGYNMIHFTPLQELGGSNSCYSLYDQLQLNQHFKSQKDGKNDVQALVEKLHRDWNVLSITDIVF 207 (1464)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCccccchhhcChhhcccCCcHHHHHHHHHHHHHhcCCEEEEEeee
Confidence 3668899999999999999999999999 567899999999999999994 899999999999997 9999999999
Q ss_pred cccccc
Q 004353 597 NHRCAH 602 (759)
Q Consensus 597 NH~~~~ 602 (759)
|||+.+
T Consensus 208 NHTa~d 213 (1464)
T TIGR01531 208 NHTANN 213 (1464)
T ss_pred cccccC
Confidence 999987
No 44
>PF14872 GHL5: Hypothetical glycoside hydrolase 5
Probab=98.49 E-value=6.5e-07 Score=102.40 Aligned_cols=145 Identities=18% Similarity=0.225 Sum_probs=100.8
Q ss_pred cceeeecccccccCCCCCCHHHHHHhHHHHHh---------------cCCCEEEECCCCCCC------------------
Q 004353 507 GFEILCQGFNWESHKSGRWYMELKEKATELSS---------------LGFSVIWLPPPTESV------------------ 553 (759)
Q Consensus 507 ~yev~~~~F~Wds~~~Gg~l~GI~ekLdYLk~---------------LGvtaIwL~PIf~s~------------------ 553 (759)
+-++++..-. .+|++.|+..-...|.+ .|+++|+|.||=+..
T Consensus 181 ILQiHv~TAs-----p~GtlaGLT~iyqria~K~~~g~pLtp~E~ny~GYDAvQLLPiEPtieyr~e~~~~h~Ff~~~~~ 255 (811)
T PF14872_consen 181 ILQIHVGTAS-----PEGTLAGLTRIYQRIADKLAAGEPLTPAEENYVGYDAVQLLPIEPTIEYRAENEPGHEFFSIRPE 255 (811)
T ss_pred eEEEecCCCC-----CCcchHHHHHHHHHHHHHHhcCCCCChhHHhcccccceeeeccCCcceeccccCCCCceeeeccc
Confidence 4556655433 47889898888777764 699999999985321
Q ss_pred ---------------------------CCCCCCccc--CCccCCC-CCC--HHHHHHHHHHHHH---cCCEEEeeeeecc
Q 004353 554 ---------------------------SPEGYMPRD--LYNLSSR-YGN--IDELKDVVNKFHD---VGMKILGDVVLNH 598 (759)
Q Consensus 554 ---------------------------s~hGYdp~D--y~~Idp~-~GT--~edfk~LV~aaH~---~GIkVIlDvV~NH 598 (759)
.+||||+.= .-+.||. ++| ++||-++|..+|. ..|+||+|+|+.|
T Consensus 256 d~~~~~~~~~~~~~~~~v~v~L~kPdtqNWGYDv~I~GsaAtNPalL~TlRPDElVdfiatLHnFp~gPIqvIyDlVyGH 335 (811)
T PF14872_consen 256 DEDELDPETEGVHEDGDVTVTLRKPDTQNWGYDVVILGSAATNPALLETLRPDELVDFIATLHNFPTGPIQVIYDLVYGH 335 (811)
T ss_pred ccccccccccccccCceEEEEecCCCccccCcceeeeccCCCCHHHHhcCCcHHHHHHHHHHhcCCCCCeEEEEeeeccc
Confidence 247777532 2233333 333 5899999999997 5899999999999
Q ss_pred ccccccccCCCccccCCCCCCCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCccEEEE
Q 004353 599 RCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRL 678 (759)
Q Consensus 599 ~~~~~~~~~~~w~~~~~~~~w~~~~~~~~~~~f~~~g~~~~~~~~~~lpdLn~~np~Vr~~i~d~l~~Wi~e~GVDGFRl 678 (759)
.-+.-.+ ..+..++.+.+-| -.|||+.+|.||..+++.-+.=+ .+|+||+|+
T Consensus 336 ADNQ~~~-------------------LLn~~flkGPnMY--------GQdlnhq~P~VRAILLEmQRRK~-n~GaDGIRV 387 (811)
T PF14872_consen 336 ADNQALD-------------------LLNRRFLKGPNMY--------GQDLNHQNPVVRAILLEMQRRKI-NTGADGIRV 387 (811)
T ss_pred ccchhhH-------------------hhhhhhccCCccc--------cccccccChHHHHHHHHHHHhhc-ccCCceeEe
Confidence 8642100 0011122221111 26899999999999999887777 899999999
Q ss_pred eccCcc
Q 004353 679 DFVRGF 684 (759)
Q Consensus 679 D~ak~f 684 (759)
|.+..|
T Consensus 388 DGgQDF 393 (811)
T PF14872_consen 388 DGGQDF 393 (811)
T ss_pred cccccc
Confidence 999743
No 45
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=98.48 E-value=3.4e-07 Score=102.46 Aligned_cols=80 Identities=21% Similarity=0.336 Sum_probs=72.0
Q ss_pred CCCHHHHHHhHHHHHhcCCCEEEECCCCCC-CCCCCCCcccCCccCCCCCCH------HHHHHHHHHHH-HcCCEEEeee
Q 004353 523 GRWYMELKEKATELSSLGFSVIWLPPPTES-VSPEGYMPRDLYNLSSRYGNI------DELKDVVNKFH-DVGMKILGDV 594 (759)
Q Consensus 523 Gg~l~GI~ekLdYLk~LGvtaIwL~PIf~s-~s~hGYdp~Dy~~Idp~~GT~------edfk~LV~aaH-~~GIkVIlDv 594 (759)
-|.+..-.++|..++++|+|.|+++|+.+- .|+..|.+.|...+||.|... ++++++|++++ +.||.+|.|+
T Consensus 18 ~G~~~~W~~~l~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~~~~~ll~~~Dv 97 (423)
T PF14701_consen 18 MGPFSDWEKHLKVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAEKKYGLLSMTDV 97 (423)
T ss_pred cCCHhHHHHHHHHHHHcCCcEEEecccccCCCCCCCccccchhhcChhhcCCCccccHHHHHHHHHHHHHHcCceEEEEE
Confidence 466888999999999999999999999975 468999999999999997653 69999999995 7999999999
Q ss_pred eecccccc
Q 004353 595 VLNHRCAH 602 (759)
Q Consensus 595 V~NH~~~~ 602 (759)
|+|||+.+
T Consensus 98 V~NHtA~n 105 (423)
T PF14701_consen 98 VLNHTANN 105 (423)
T ss_pred eeccCcCC
Confidence 99999986
No 46
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=98.14 E-value=1.8e-05 Score=86.49 Aligned_cols=139 Identities=16% Similarity=0.195 Sum_probs=85.4
Q ss_pred CHHHHHHhHHHHHhcCCCEEEECCCCCCC--CCCCCCcccCCccCCCCC--CHHHHHHHHHHHHHcCCEEEeeeeecccc
Q 004353 525 WYMELKEKATELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYG--NIDELKDVVNKFHDVGMKILGDVVLNHRC 600 (759)
Q Consensus 525 ~l~GI~ekLdYLk~LGvtaIwL~PIf~s~--s~hGYdp~Dy~~Idp~~G--T~edfk~LV~aaH~~GIkVIlDvV~NH~~ 600 (759)
.-+.+.+.|+.|+++|+|+|++.--..+. ....+.|...+......+ +-+-|+.||++||++||+|..=+.+...+
T Consensus 17 ~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~~~~~~~ 96 (311)
T PF02638_consen 17 SKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWFRVGFNA 96 (311)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEEEeecCC
Confidence 45789999999999999999986443322 112222222121112222 25679999999999999999876555443
Q ss_pred cc---ccccCCCccccCCCCCCCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCccEEE
Q 004353 601 AH---YQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWR 677 (759)
Q Consensus 601 ~~---~~~~~~~w~~~~~~~~w~~~~~~~~~~~f~~~g~~~~~~~~~~lpdLn~~np~Vr~~i~d~l~~Wi~e~GVDGFR 677 (759)
.. ..+.++.|..... .+|.. ..........-||-.+|+||++|++.++..++.|+|||+-
T Consensus 97 ~~~~~~~~~~p~~~~~~~-~~~~~----------------~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~YdvDGIh 159 (311)
T PF02638_consen 97 PDVSHILKKHPEWFAVNH-PGWVR----------------TYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNYDVDGIH 159 (311)
T ss_pred CchhhhhhcCchhheecC-CCcee----------------ecccCCCCceEECCCCHHHHHHHHHHHHHHHhcCCCCeEE
Confidence 22 1112222211000 00000 0000012223588899999999999999999999999999
Q ss_pred Eec
Q 004353 678 LDF 680 (759)
Q Consensus 678 lD~ 680 (759)
||-
T Consensus 160 lDd 162 (311)
T PF02638_consen 160 LDD 162 (311)
T ss_pred ecc
Confidence 993
No 47
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=98.11 E-value=2.6e-05 Score=74.90 Aligned_cols=130 Identities=13% Similarity=0.129 Sum_probs=84.5
Q ss_pred HHhHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCEEEeeeeeccccccccccCCC
Q 004353 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGV 609 (759)
Q Consensus 530 ~ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIkVIlDvV~NH~~~~~~~~~~~ 609 (759)
.+-+++|+++|+++|-+.- .+....-|-|+......|.++ .+-|+++|++||++||+|++=+-++ .-...-..+++
T Consensus 3 ~~~~~~lk~~~v~si~i~a--~~h~g~ayYPt~~~~~hp~L~-~Dllge~v~a~h~~Girv~ay~~~~-~d~~~~~~HPe 78 (132)
T PF14871_consen 3 EQFVDTLKEAHVNSITIFA--KCHGGYAYYPTKVGPRHPGLK-RDLLGEQVEACHERGIRVPAYFDFS-WDEDAAERHPE 78 (132)
T ss_pred HHHHHHHHHhCCCEEEEEc--ccccEEEEccCCCCcCCCCCC-cCHHHHHHHHHHHCCCEEEEEEeee-cChHHHHhCCc
Confidence 3557899999999999852 111223366777777789998 7889999999999999999877666 32222345777
Q ss_pred ccccCCCCCCCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCccEEEEec
Q 004353 610 WNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDF 680 (759)
Q Consensus 610 w~~~~~~~~w~~~~~~~~~~~f~~~g~~~~~~~~~~lpdLn~~np~Vr~~i~d~l~~Wi~e~GVDGFRlD~ 680 (759)
|..-... .... ....+. ..+...+..++ ..+++++..++..++.|++||+=||.
T Consensus 79 W~~~~~~----G~~~--~~~~~~----------~~~~~~~c~ns-~Y~e~~~~~i~Ei~~~y~~DGiF~D~ 132 (132)
T PF14871_consen 79 WFVRDAD----GRPM--RGERFG----------YPGWYTCCLNS-PYREFLLEQIREILDRYDVDGIFFDI 132 (132)
T ss_pred eeeECCC----CCCc--CCCCcC----------CCCceecCCCc-cHHHHHHHHHHHHHHcCCCCEEEecC
Confidence 7543210 0000 000000 00112233334 45689999999999889999998884
No 48
>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A.
Probab=98.04 E-value=6.3e-06 Score=95.27 Aligned_cols=77 Identities=22% Similarity=0.498 Sum_probs=57.7
Q ss_pred CHHHHHHhHHHHHhcCCCEEEECCCCCCCC---------CCCCCcccCCccC----CCCCCHHHHHHHHHHHHHcCCEEE
Q 004353 525 WYMELKEKATELSSLGFSVIWLPPPTESVS---------PEGYMPRDLYNLS----SRYGNIDELKDVVNKFHDVGMKIL 591 (759)
Q Consensus 525 ~l~GI~ekLdYLk~LGvtaIwL~PIf~s~s---------~hGYdp~Dy~~Id----p~~GT~edfk~LV~aaH~~GIkVI 591 (759)
+..-|.+..+-++++|||..||.|-+.+.. ..||+-+|-|++. ..|||.+||+..|+++|+.||+||
T Consensus 585 tN~~IA~Na~lFk~wGITsFemAPQY~Ss~D~tFLDSiiqNGYAFtDRYDLg~s~ptKYGs~~dL~~AikALH~~Giqvi 664 (809)
T PF02324_consen 585 TNVVIAKNADLFKSWGITSFEMAPQYRSSTDGTFLDSIIQNGYAFTDRYDLGMSKPTKYGSVEDLRNAIKALHAAGIQVI 664 (809)
T ss_dssp HHHHHHHTHHHHHHTTEEEEE----S-B--SSSSHHHHTT-SSSBS-TT-SSSSS-BTTB-HHHHHHHHHHHHHTT-EEE
T ss_pred HHHHHHHhHHHHHhcCcceeeeCcceecCCCCcchhhHhhcCccccchhhhcCCCCCCCCCHHHHHHHHHHHHHcCcchh
Confidence 357899999999999999999999998652 3899999999987 689999999999999999999999
Q ss_pred eeeeeccccc
Q 004353 592 GDVVLNHRCA 601 (759)
Q Consensus 592 lDvV~NH~~~ 601 (759)
.|.|++.+..
T Consensus 665 aDwVpdQiYn 674 (809)
T PF02324_consen 665 ADWVPDQIYN 674 (809)
T ss_dssp EEE-TSEE--
T ss_pred hhhchHhhhC
Confidence 9999999864
No 49
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.50 E-value=0.00044 Score=77.78 Aligned_cols=139 Identities=15% Similarity=0.139 Sum_probs=81.6
Q ss_pred HHHHHHhHHHHHhcCCCEEEECCCCCCCC--CCCCCcccCCccC--CCCCCHHHHHHHHHHHHHcCCEEEeeeeeccccc
Q 004353 526 YMELKEKATELSSLGFSVIWLPPPTESVS--PEGYMPRDLYNLS--SRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 601 (759)
Q Consensus 526 l~GI~ekLdYLk~LGvtaIwL~PIf~s~s--~hGYdp~Dy~~Id--p~~GT~edfk~LV~aaH~~GIkVIlDvV~NH~~~ 601 (759)
=+.+.+.|+.|+.||||+|+..-...+.. ...+.|..-+... .--++-+-|..+|++||++||+|+.=+-+--++.
T Consensus 63 ~~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~~~~~~~~~g~DpLa~~I~~AHkr~l~v~aWf~~~~~a~ 142 (418)
T COG1649 63 RQELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGLPGVLGVDPGYDPLAFVIAEAHKRGLEVHAWFNPYRMAP 142 (418)
T ss_pred HHHHHHHHHHHHHcCCceeEEEEecCccccccccccccccCcCcccCCCCCCChHHHHHHHHHhcCCeeeechhhcccCC
Confidence 47899999999999999999754333221 1111221101000 0112345699999999999999987444443333
Q ss_pred ccc---ccCCCccccCCCCCCCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCccEEEE
Q 004353 602 HYQ---NQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRL 678 (759)
Q Consensus 602 ~~~---~~~~~w~~~~~~~~w~~~~~~~~~~~f~~~g~~~~~~~~~~lpdLn~~np~Vr~~i~d~l~~Wi~e~GVDGFRl 678 (759)
... ..+..|..-.. -.| .+....+.....-||-.+|+||++|.+.+-..++.|.|||.-|
T Consensus 143 ~~s~~~~~~p~~~~~~~-~~~----------------~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~~YdvDGIQf 205 (418)
T COG1649 143 PTSPLTKRHPHWLTTKR-PGW----------------VYVRHQGWGKRVWLDPGIPEVQDFITSLVVEVVRNYDVDGIQF 205 (418)
T ss_pred CCChhHhhCCCCcccCC-CCe----------------EEEecCCceeeeEeCCCChHHHHHHHHHHHHHHhCCCCCceec
Confidence 210 00111100000 000 0001111112345778899999999999999999999999999
Q ss_pred ecc
Q 004353 679 DFV 681 (759)
Q Consensus 679 D~a 681 (759)
|--
T Consensus 206 Dd~ 208 (418)
T COG1649 206 DDY 208 (418)
T ss_pred cee
Confidence 974
No 50
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=96.72 E-value=0.0017 Score=77.40 Aligned_cols=79 Identities=20% Similarity=0.326 Sum_probs=70.4
Q ss_pred CCHHHHHHhHHHHHhcCCCEEEECCCCCC-CCCCCCCcccCCccCCCCC------CHHHHHHHHHHHHH-cCCEEEeeee
Q 004353 524 RWYMELKEKATELSSLGFSVIWLPPPTES-VSPEGYMPRDLYNLSSRYG------NIDELKDVVNKFHD-VGMKILGDVV 595 (759)
Q Consensus 524 g~l~GI~ekLdYLk~LGvtaIwL~PIf~s-~s~hGYdp~Dy~~Idp~~G------T~edfk~LV~aaH~-~GIkVIlDvV 595 (759)
|-|..-+.+|.-+++-|+|.|.++|+.+- .++..|...|-..+++.|. +.+|.++||+.+|+ -||--|-|+|
T Consensus 139 Gpl~eWeprL~va~e~gYNmIHfTPlqelG~S~S~YSl~dql~~~~~~~~~~~k~s~eDV~~lV~~l~rewnvlsi~DvV 218 (1521)
T KOG3625|consen 139 GPLDEWEPRLRVAKESGYNMIHFTPLQELGLSRSCYSLADQLELNPDFSRPNRKYSFEDVGQLVEKLKREWNVLSITDVV 218 (1521)
T ss_pred CChhhhhHHHHHHHHcCCceEeeeeHHHhccCCCccchHhhhhcChhhhccCCCCCHHHHHHHHHHHHhhcCeeeeehhh
Confidence 44667788999999999999999999984 4778999999999999887 78999999999997 5999999999
Q ss_pred ecccccc
Q 004353 596 LNHRCAH 602 (759)
Q Consensus 596 ~NH~~~~ 602 (759)
+||++..
T Consensus 219 ~NHtAnn 225 (1521)
T KOG3625|consen 219 YNHTANN 225 (1521)
T ss_pred hhccccC
Confidence 9999973
No 51
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=96.69 E-value=0.03 Score=63.27 Aligned_cols=168 Identities=15% Similarity=0.070 Sum_probs=97.8
Q ss_pred CCHHHHHHhHHHHHhcCCCEEEECCC-CCCCCCCCCCcccCCccC-CCCCCHHHHHHHHHHHHHcCCEEEeeeeeccccc
Q 004353 524 RWYMELKEKATELSSLGFSVIWLPPP-TESVSPEGYMPRDLYNLS-SRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 601 (759)
Q Consensus 524 g~l~GI~ekLdYLk~LGvtaIwL~PI-f~s~s~hGYdp~Dy~~Id-p~~GT~edfk~LV~aaH~~GIkVIlDvV~NH~~~ 601 (759)
-+-+.|.+.++.++++|++.+.|=== +......--..-|+ .+| .+|- .-|+.|++.+|++||+.=|=+-+--++.
T Consensus 55 ~~e~~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW-~~~~~kFP--~Gl~~l~~~i~~~Gmk~GlW~ePe~v~~ 131 (394)
T PF02065_consen 55 ITEEKILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDW-EPDPKKFP--NGLKPLADYIHSLGMKFGLWFEPEMVSP 131 (394)
T ss_dssp --HHHHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBE-CBBTTTST--THHHHHHHHHHHTT-EEEEEEETTEEES
T ss_pred CCHHHHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCce-eEChhhhC--CcHHHHHHHHHHCCCeEEEEeccccccc
Confidence 34678888899999999999887322 22111110011122 234 3553 3599999999999999888665554443
Q ss_pred c--ccccCCCccccCCCCCCCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCccEEEEe
Q 004353 602 H--YQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLD 679 (759)
Q Consensus 602 ~--~~~~~~~w~~~~~~~~w~~~~~~~~~~~f~~~g~~~~~~~~~~lpdLn~~np~Vr~~i~d~l~~Wi~e~GVDGFRlD 679 (759)
+ ....+++|..... ... ... ....--||..+|+|++++.+.+..+++++|||.+.+|
T Consensus 132 ~S~l~~~hPdw~l~~~--------------~~~----~~~---~r~~~vLD~~~pev~~~l~~~i~~ll~~~gidYiK~D 190 (394)
T PF02065_consen 132 DSDLYREHPDWVLRDP--------------GRP----PTL---GRNQYVLDLSNPEVRDYLFEVIDRLLREWGIDYIKWD 190 (394)
T ss_dssp SSCHCCSSBGGBTCCT--------------TSE-----EC---BTTBEEB-TTSHHHHHHHHHHHHHHHHHTT-SEEEEE
T ss_pred hhHHHHhCccceeecC--------------CCC----CcC---cccceEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEec
Confidence 2 1112333321100 000 000 0112248889999999999999988889999999999
Q ss_pred ccCcc-----------c-------HHHHHHHHHhCCCcEEEEeecCCCCcccCc
Q 004353 680 FVRGF-----------W-------GGYVKDYLEATEPYFAVGEYWDSLSYTYGE 715 (759)
Q Consensus 680 ~ak~f-----------~-------~~~~~~~~~~~p~~~lvGE~w~~~~y~~g~ 715 (759)
....+ + .++.++++++.|++++=.=.+.+....+|.
T Consensus 191 ~n~~~~~~~~~~~~~~~~~~~~~~y~l~~~L~~~~P~v~iE~CssGG~R~D~g~ 244 (394)
T PF02065_consen 191 FNRDITEAGSPSLPEGYHRYVLGLYRLLDRLRARFPDVLIENCSSGGGRFDPGM 244 (394)
T ss_dssp -TS-TTS-SSTTS-GHHHHHHHHHHHHHHHHHHHTTTSEEEE-BTTBTTTSHHH
T ss_pred cccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhCCCcEEEeccCCCCccccch
Confidence 96411 1 135677888899999877677665544443
No 52
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=96.59 E-value=0.014 Score=64.64 Aligned_cols=144 Identities=15% Similarity=0.152 Sum_probs=78.7
Q ss_pred CCHHHHHHhHHHHHhcCC--CEEEECCCCCCCC-----CCCCCc------ccC--CccC--CCCCCHHHHHHHHHHHHHc
Q 004353 524 RWYMELKEKATELSSLGF--SVIWLPPPTESVS-----PEGYMP------RDL--YNLS--SRYGNIDELKDVVNKFHDV 586 (759)
Q Consensus 524 g~l~GI~ekLdYLk~LGv--taIwL~PIf~s~s-----~hGYdp------~Dy--~~Id--p~~GT~edfk~LV~aaH~~ 586 (759)
.+.+.+.+-++.+++.|| ++|||-+-..... ...|.. ..| +..+ .+|- +.++||+++|++
T Consensus 21 ~~~~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FP---dp~~mi~~Lh~~ 97 (340)
T cd06597 21 DTQAEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWP---NPKGMIDELHEQ 97 (340)
T ss_pred CCHHHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceecccccCccccCC---CHHHHHHHHHHC
Confidence 357889999999999887 8999974221110 111211 000 1111 1232 689999999999
Q ss_pred CCEEEeeeeeccccccccccCCCccccCCCCCCCCCcccCCCCCC--CCCCCc----cCCCCCCCCCCCCCCCHHHHHHH
Q 004353 587 GMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHF--QGRGNK----SSGDNFHAAPNIDHSQDFVRKDI 660 (759)
Q Consensus 587 GIkVIlDvV~NH~~~~~~~~~~~w~~~~~~~~w~~~~~~~~~~~f--~~~g~~----~~~~~~~~lpdLn~~np~Vr~~i 660 (759)
|+||++=+.+ ++..+.......+..+.. .....+| +..+.. ..|.+.. .-+|+.||++++..
T Consensus 98 G~kv~l~v~P-~i~~~~~~~~~~~~~~~~---------~~~~g~~vk~~~G~~~~~~~~W~g~~--~~~Dftnp~a~~Ww 165 (340)
T cd06597 98 GVKVLLWQIP-IIKLRPHPHGQADNDEDY---------AVAQNYLVQRGVGKPYRIPGQWFPDS--LMLDFTNPEAAQWW 165 (340)
T ss_pred CCEEEEEecC-ccccccccccccchhHHH---------HHHCCEEEEcCCCCccccccccCCCc--eeecCCCHHHHHHH
Confidence 9999984443 221110000000000000 0000000 000110 0111212 34677999999999
Q ss_pred HHHHHHHHHcCCccEEEEeccC
Q 004353 661 KEWLCWLRNEIGYDGWRLDFVR 682 (759)
Q Consensus 661 ~d~l~~Wi~e~GVDGFRlD~ak 682 (759)
.+.++.+++++|||||-+|+..
T Consensus 166 ~~~~~~~~~~~Gidg~w~D~~E 187 (340)
T cd06597 166 MEKRRYLVDELGIDGFKTDGGE 187 (340)
T ss_pred HHHHHHHHHhcCCcEEEecCCC
Confidence 9999999878999999999764
No 53
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=96.52 E-value=0.021 Score=66.95 Aligned_cols=146 Identities=15% Similarity=0.200 Sum_probs=75.6
Q ss_pred CCHHHHHHhHHHHHhcCCCEEEECCCCC-CCCCCCCCc----ccCCccCCCCCCHHHHHHHHHHHHHcCCEEEeeeeecc
Q 004353 524 RWYMELKEKATELSSLGFSVIWLPPPTE-SVSPEGYMP----RDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNH 598 (759)
Q Consensus 524 g~l~GI~ekLdYLk~LGvtaIwL~PIf~-s~s~hGYdp----~Dy~~Idp~~GT~edfk~LV~aaH~~GIkVIlDvV~NH 598 (759)
.......+.|+.|+.+-||+|++==..- +...-+-.. ..|..+.-+-=..+-+|.+|++||+.||++|.=..+.-
T Consensus 115 ~~~~~~~~~i~~L~~yHIN~~QFYDW~~rH~~Pl~~~~~~~~~~w~D~~~r~i~~~~Vk~yI~~ah~~Gmkam~Ynmiya 194 (559)
T PF13199_consen 115 KSAEDIEAEIDQLNRYHINGLQFYDWMYRHHKPLPGTNGQPDQTWTDWANRQISTSTVKDYINAAHKYGMKAMAYNMIYA 194 (559)
T ss_dssp GGHHHHHHHHHHHHHTT--EEEETS--SBTTB-S-SSS-EEE-TT-TTT--EEEHHHHHHHHHHHHHTT-EEEEEEESSE
T ss_pred CCchhHHHHHHHHHhhCcCeEEEEeeccccCCcCCCCCCchhhhhhhhcCCEehHHHHHHHHHHHHHcCcceehhHhhhc
Confidence 4678999999999999999999732221 111111111 01222222222357899999999999999998544432
Q ss_pred ccccccc--cCCCccccCCCCCCCCCcccCCCCCCCCCCCccCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHcCCccE
Q 004353 599 RCAHYQN--QNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHA-APNIDHSQDFVRKDIKEWLCWLRNEIGYDG 675 (759)
Q Consensus 599 ~~~~~~~--~~~~w~~~~~~~~w~~~~~~~~~~~f~~~g~~~~~~~~~~-lpdLn~~np~Vr~~i~d~l~~Wi~e~GVDG 675 (759)
...++.. -+.+|..|.....- ..+ .+.....+.. +-=+|..|+..|+||++-+...++.+|+||
T Consensus 195 a~~~~~~~gv~~eW~ly~d~~~~-----~~~--------~~~l~~~w~s~lyl~dP~N~~WQ~yI~~q~~~~~~~~gFDG 261 (559)
T PF13199_consen 195 ANNNYEEDGVSPEWGLYKDDSHS-----NQD--------TYDLPDGWPSDLYLMDPGNPEWQNYIINQMNKAIQNFGFDG 261 (559)
T ss_dssp EETT--S--SS-GGBEEESSSBT-----SB---------EEEETT-E--EEEEB-TT-HHHHHHHHHHHHHHHHHHT--E
T ss_pred cccCcccccCCchhhhhhccCCC-----ccc--------eeecCcccccceEEecCCCHHHHHHHHHHHHHHHHccCCce
Confidence 2222211 12334433221000 000 0000001111 334677899999999999999999999999
Q ss_pred EEEeccC
Q 004353 676 WRLDFVR 682 (759)
Q Consensus 676 FRlD~ak 682 (759)
|-+|...
T Consensus 262 ~hlDq~G 268 (559)
T PF13199_consen 262 WHLDQLG 268 (559)
T ss_dssp EEEE-S-
T ss_pred EeeeccC
Confidence 9999974
No 54
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=96.46 E-value=0.016 Score=63.25 Aligned_cols=132 Identities=16% Similarity=0.164 Sum_probs=82.3
Q ss_pred CCHHHHHHhHHHHHhcC--CCEEEECCCCCCCCCCCCCcccCCccCC-CCCCHHHHHHHHHHHHHcCCEEEeeeeecccc
Q 004353 524 RWYMELKEKATELSSLG--FSVIWLPPPTESVSPEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHRC 600 (759)
Q Consensus 524 g~l~GI~ekLdYLk~LG--vtaIwL~PIf~s~s~hGYdp~Dy~~Idp-~~GT~edfk~LV~aaH~~GIkVIlDvV~NH~~ 600 (759)
.+-+.|.+.++.++++| ++.|+|---+.. ..| | +..|+ +|- +.++||+++|++|||+++=+-+ +++
T Consensus 27 ~s~~~v~~~~~~~~~~~iP~d~i~iD~~w~~--~~g----~-f~~d~~~FP---dp~~mi~~l~~~G~k~~l~i~P-~i~ 95 (303)
T cd06592 27 INQETVLNYAQEIIDNGFPNGQIEIDDNWET--CYG----D-FDFDPTKFP---DPKGMIDQLHDLGFRVTLWVHP-FIN 95 (303)
T ss_pred cCHHHHHHHHHHHHHcCCCCCeEEeCCCccc--cCC----c-cccChhhCC---CHHHHHHHHHHCCCeEEEEECC-eeC
Confidence 45788999999999999 478887632211 111 2 34443 565 4899999999999999997776 344
Q ss_pred cc---cccc-CCCccccCCCCCCCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCccEE
Q 004353 601 AH---YQNQ-NGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGW 676 (759)
Q Consensus 601 ~~---~~~~-~~~w~~~~~~~~w~~~~~~~~~~~f~~~g~~~~~~~~~~lpdLn~~np~Vr~~i~d~l~~Wi~e~GVDGF 676 (759)
.+ |... +..+..... .. ..+ +. +. .+.+. ..-+|+.||++++.+.+.++.++.++|||||
T Consensus 96 ~~s~~~~e~~~~g~~vk~~-----~g----~~~-~~--~~--~w~g~--~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~ 159 (303)
T cd06592 96 TDSENFREAVEKGYLVSEP-----SG----DIP-AL--TR--WWNGT--AAVLDFTNPEAVDWFLSRLKSLQEKYGIDSF 159 (303)
T ss_pred CCCHHHHhhhhCCeEEECC-----CC----CCC-cc--cc--eecCC--cceEeCCCHHHHHHHHHHHHHHHHHhCCcEE
Confidence 22 2210 011110000 00 000 00 00 01111 2346779999999999999999888999999
Q ss_pred EEeccC
Q 004353 677 RLDFVR 682 (759)
Q Consensus 677 RlD~ak 682 (759)
-+|+..
T Consensus 160 w~D~~E 165 (303)
T cd06592 160 KFDAGE 165 (303)
T ss_pred EeCCCC
Confidence 999976
No 55
>PLN02316 synthase/transferase
Probab=96.02 E-value=0.15 Score=63.96 Aligned_cols=73 Identities=14% Similarity=0.146 Sum_probs=47.7
Q ss_pred CCCeEEEeeeccCCCCCcccCCCCCCCCceeeecccccccCccccCCCcceeEEEecCccceeEEEEEeCC-----Cccc
Q 004353 312 TGDVVVHWGVCRDDSKNWEIPAEPYPPETIVFKNKALRTLLQPKEGGKGCSRLFTVDEEFAGFLFVLKLNE-----NTWL 386 (759)
Q Consensus 312 ~~~~vlHWgv~k~~~~~W~~pp~~~~p~~s~~~~~a~eTpf~~~~~~~~~~~~~~L~~~~~g~~FVL~~~~-----~~W~ 386 (759)
...|.||+|.-+ |.-.++-. | +.+++. ..+|.-++..+.+...=--|-||+- ++ +.|=
T Consensus 345 ~~~v~i~gg~N~-----W~~~~~~~-~-------~~~~~~---~~~g~ww~a~v~vP~~A~~mDfVFs-dg~~~~~~~yD 407 (1036)
T PLN02316 345 STEIWIHGGYNN-----WIDGLSIV-E-------KLVKSE---EKDGDWWYAEVVVPERALVLDWVFA-DGPPGNARNYD 407 (1036)
T ss_pred CCcEEEEEeEcC-----CCCCCccc-c-------eeeccc---CCCCCEEEEEEecCCCceEEEEEEe-cCCcccccccc
Confidence 468999999988 86554321 1 011111 1134434455777555555999998 65 7999
Q ss_pred ccCCcceEEeCCCCC
Q 004353 387 KCMENDFYIPLTSSS 401 (759)
Q Consensus 387 k~~g~dfyi~l~~~~ 401 (759)
||+|.||+++.....
T Consensus 408 Nn~~~Dyh~~v~~~~ 422 (1036)
T PLN02316 408 NNGRQDFHAIVPNNI 422 (1036)
T ss_pred cCCCcceeeecCCCC
Confidence 999999999997643
No 56
>PLN02316 synthase/transferase
Probab=95.92 E-value=0.31 Score=61.21 Aligned_cols=228 Identities=14% Similarity=0.213 Sum_probs=116.3
Q ss_pred CCceEEEeeeeccCCCCCCccCCCCCCCCCCccccccceeccccccccCCCceeEEEEeecCCCCceeeEEEEEeCC---
Q 004353 121 PGKWILHWGVSFVGDNGSEWDQPPKKMRPPGSVSIKDYAIETPLKKLAEGDVFDQVNIDFDTRSDIAAINFVLKDEE--- 197 (759)
Q Consensus 121 ~~~~vLHWgv~~~~~~~~eW~~Pp~~~~P~gt~~~~~~A~eT~f~~~~~~~~~~~~~i~l~~d~~~~~i~FVlk~~~--- 197 (759)
..++.||+|. ..|.-..+-. .+-+.+. ..+|+ .-..+|.++ ....-|.||+-++.
T Consensus 345 ~~~v~i~gg~-------N~W~~~~~~~---------~~~~~~~---~~~g~-ww~a~v~vP--~~A~~mDfVFsdg~~~~ 402 (1036)
T PLN02316 345 STEIWIHGGY-------NNWIDGLSIV---------EKLVKSE---EKDGD-WWYAEVVVP--ERALVLDWVFADGPPGN 402 (1036)
T ss_pred CCcEEEEEeE-------cCCCCCCccc---------ceeeccc---CCCCC-EEEEEEecC--CCceEEEEEEecCCccc
Confidence 4459999999 6676554310 0011111 12342 122445544 56778999999984
Q ss_pred cccccccCCcceeeecccccccCCCccccccccCCCchHHHHHHHHhhhhccCCCCCCCCC-hhhhhhHhHHhhhhhccc
Q 004353 198 TGAWYQHRGRDFKVPLVDYLQHDGNVIGTKSTFGLWPGALGQLSKMILKADTSQSGIQDSS-SESCELKQENKHLEGFYE 276 (759)
Q Consensus 198 ~~~W~k~~G~df~v~l~~~~~~~~d~~g~~~~~~~w~~~l~~is~~~~~~e~~~~~~~~~~-~~~~a~~~~~k~l~~~~e 276 (759)
.+.|=||+|.||+++.++...+..-.+.-++ ..+++|...-...|+.. +...- |-...+....|+++.|.-
T Consensus 403 ~~~yDNn~~~Dyh~~v~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~--r~k~~~~a~~~ae~k~~~~~~~l~ 474 (1036)
T PLN02316 403 ARNYDNNGRQDFHAIVPNNIPEELYWVEEEH------QIYRKLQEERRLREEAI--RAKAEKTARMKAEMKEKTLKMFLL 474 (1036)
T ss_pred ccccccCCCcceeeecCCCCchhhhhHHHHH------HHHHHHHHHHHhhHHHH--HHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3479999999999999865322110111011 14445543322222211 11011 111111224455554432
Q ss_pred ccc-hh--hhhcccceeEEEEEeccCCCceEEEEecCCCCCeEEEeeeccCCCCCcccCCCCCCCCceeeecccccccCc
Q 004353 277 ELP-IV--KEIIIENTVSVSVRKCPETAKTLLNLETDLTGDVVVHWGVCRDDSKNWEIPAEPYPPETIVFKNKALRTLLQ 353 (759)
Q Consensus 277 ~~~-i~--k~~~~~~~~~v~v~~~~~~~~~~v~~~td~~~~~vlHWgv~k~~~~~W~~pp~~~~p~~s~~~~~a~eTpf~ 353 (759)
... |+ .-.-.+..-+|+|-=|+..+- -+....|-||||--+ |.-+..+++|-. |.
T Consensus 475 ~~~~~~~teP~~~~aG~~v~v~Yn~~~t~------l~~~~ev~~~g~~Nr-----Wth~~~~~~~~~-----------m~ 532 (1036)
T PLN02316 475 SQKHIVYTEPLEVQAGTTVTVLYNPANTV------LNGKPEVWFRGSFNR-----WTHRLGPLPPQK-----------MV 532 (1036)
T ss_pred ccceEEEecCCCCCCCCEEEEEECCCCCc------CCCCceEEEEccccC-----cCCCCCCCCcee-----------ee
Confidence 111 10 000112222344444333221 124557888999888 998877777652 22
Q ss_pred cccCCCcceeEEEecCccceeEEEEEe--CCCcccccCCcceEEeCCCC
Q 004353 354 PKEGGKGCSRLFTVDEEFAGFLFVLKL--NENTWLKCMENDFYIPLTSS 400 (759)
Q Consensus 354 ~~~~~~~~~~~~~L~~~~~g~~FVL~~--~~~~W~k~~g~dfyi~l~~~ 400 (759)
..++|......+++...---|=||+-. .+++|=+++|.||++|...+
T Consensus 533 ~~~~g~~~~a~v~vP~da~~mdfvFs~~~~g~~yDn~~~~dyh~~v~g~ 581 (1036)
T PLN02316 533 PADNGSHLKATVKVPLDAYMMDFVFSEKEEGGIFDNRNGLDYHIPVFGG 581 (1036)
T ss_pred ecCCCceEEEEEEccccceEEEEEEecCCCCCCcCCCCCcCCcccccCC
Confidence 223333223446663333337788842 37789899999999999854
No 57
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=95.83 E-value=0.059 Score=58.69 Aligned_cols=133 Identities=17% Similarity=0.113 Sum_probs=83.9
Q ss_pred CCCHHHHHHhHHHHHhcC--CCEEEECCCCCCCCCCCCCcccCCccCC-CCCCHHHHHHHHHHHHHcCCEEEeeeeeccc
Q 004353 523 GRWYMELKEKATELSSLG--FSVIWLPPPTESVSPEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHR 599 (759)
Q Consensus 523 Gg~l~GI~ekLdYLk~LG--vtaIwL~PIf~s~s~hGYdp~Dy~~Idp-~~GT~edfk~LV~aaH~~GIkVIlDvV~NH~ 599 (759)
..+-+.+.+.++.+++.| ++.|||-.=+.. +|.-.| +..|+ +|.. .++||+++|++||+|++-+.+ ++
T Consensus 20 y~~~~~v~~~~~~~~~~~iP~d~~~lD~~w~~----~~~~~~-f~~d~~~FPd---~~~~i~~l~~~G~~~~~~~~P-~i 90 (308)
T cd06593 20 YYDEEEVNEFADGMRERNLPCDVIHLDCFWMK----EFQWCD-FEFDPDRFPD---PEGMLSRLKEKGFKVCLWINP-YI 90 (308)
T ss_pred CCCHHHHHHHHHHHHHcCCCeeEEEEeccccc----CCccee-eEECcccCCC---HHHHHHHHHHCCCeEEEEecC-CC
Confidence 356778999999999999 688888754331 222122 45553 6654 689999999999999998875 55
Q ss_pred ccc---cccc-CCCccccCCCCCCCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCccE
Q 004353 600 CAH---YQNQ-NGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDG 675 (759)
Q Consensus 600 ~~~---~~~~-~~~w~~~~~~~~w~~~~~~~~~~~f~~~g~~~~~~~~~~lpdLn~~np~Vr~~i~d~l~~Wi~e~GVDG 675 (759)
+.+ |... ...|..... +...+.. ..|.+ ...-+|+.||++++.+.+.++.++ +.||||
T Consensus 91 ~~~~~~~~e~~~~g~~v~~~-----------~g~~~~~----~~w~g--~~~~~Dftnp~a~~w~~~~~~~~~-~~Gid~ 152 (308)
T cd06593 91 AQKSPLFKEAAEKGYLVKKP-----------DGSVWQW----DLWQP--GMGIIDFTNPDACKWYKDKLKPLL-DMGVDC 152 (308)
T ss_pred CCCchhHHHHHHCCeEEECC-----------CCCeeee----cccCC--CcccccCCCHHHHHHHHHHHHHHH-HhCCcE
Confidence 432 1110 011111000 0000000 01111 123467799999999999999888 699999
Q ss_pred EEEeccC
Q 004353 676 WRLDFVR 682 (759)
Q Consensus 676 FRlD~ak 682 (759)
|-+|...
T Consensus 153 ~~~D~~e 159 (308)
T cd06593 153 FKTDFGE 159 (308)
T ss_pred EecCCCC
Confidence 9999865
No 58
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=95.30 E-value=0.16 Score=55.89 Aligned_cols=135 Identities=16% Similarity=0.261 Sum_probs=79.8
Q ss_pred CHHHHHHhHHHHHhcCC--CEEEECCCCCCC--CCCCCCc-ccCCccCC-CCCCHHHHHHHHHHHHHcCCEEEeeeeecc
Q 004353 525 WYMELKEKATELSSLGF--SVIWLPPPTESV--SPEGYMP-RDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNH 598 (759)
Q Consensus 525 ~l~GI~ekLdYLk~LGv--taIwL~PIf~s~--s~hGYdp-~Dy~~Idp-~~GT~edfk~LV~aaH~~GIkVIlDvV~NH 598 (759)
..+.+.+.++.+++.|| ++|||- ..... ...||.. .| +..|+ +|- +.++||+++|++|++|++-+. .+
T Consensus 21 s~~~v~~~~~~~~~~~iP~d~i~ld-dw~~~~~~~~g~~~~~~-f~~d~~~FP---dp~~mi~~Lh~~G~~~~~~i~-P~ 94 (317)
T cd06594 21 GTDKVLEALEKARAAGVKVAGLWLQ-DWTGRRETSFGDRLWWN-WEWDPERYP---GLDELIEELKARGIRVLTYIN-PY 94 (317)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEc-cccCcccccccceeeee-eEEChhhCC---CHHHHHHHHHHCCCEEEEEec-Cc
Confidence 78899999999999887 889986 33110 1122211 11 34454 453 578999999999999999443 44
Q ss_pred cccc---c-ccc-CCCccccCCCCCCCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCc
Q 004353 599 RCAH---Y-QNQ-NGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGY 673 (759)
Q Consensus 599 ~~~~---~-~~~-~~~w~~~~~~~~w~~~~~~~~~~~f~~~g~~~~~~~~~~lpdLn~~np~Vr~~i~d~l~~Wi~e~GV 673 (759)
+..+ + ... ...+.... .+...+.. ..+.+.. .-+|+.||++++...+-++..+.++||
T Consensus 95 v~~~~~~~y~~~~~~g~~vk~-----------~~g~~~~~----~~w~g~~--~~~Dftnp~a~~ww~~~~~~~~~~~Gv 157 (317)
T cd06594 95 LADDGPLYYEEAKDAGYLVKD-----------ADGSPYLV----DFGEFDC--GVLDLTNPAARDWFKQVIKEMLLDLGL 157 (317)
T ss_pred eecCCchhHHHHHHCCeEEEC-----------CCCCeeee----ccCCCCc--eeeecCCHHHHHHHHHHHHHHhhhcCC
Confidence 4432 0 100 00000000 00000100 0111112 346779999999999988877558999
Q ss_pred cEEEEeccC
Q 004353 674 DGWRLDFVR 682 (759)
Q Consensus 674 DGFRlD~ak 682 (759)
|||=+|+-.
T Consensus 158 dg~w~D~~E 166 (317)
T cd06594 158 SGWMADFGE 166 (317)
T ss_pred cEEEecCCC
Confidence 999999754
No 59
>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.
Probab=95.18 E-value=0.11 Score=46.48 Aligned_cols=37 Identities=22% Similarity=0.606 Sum_probs=24.9
Q ss_pred eEEEEeecCCCCceeeEEEEEeCCcccccccCCcceeeec
Q 004353 174 DQVNIDFDTRSDIAAINFVLKDEETGAWYQHRGRDFKVPL 213 (759)
Q Consensus 174 ~~~~i~l~~d~~~~~i~FVlk~~~~~~W~k~~G~df~v~l 213 (759)
-..+|.++ +. -..|.||++++. +.|=+|+|.||+++.
T Consensus 50 ~~~tv~vP-~~-a~~~dfvF~dg~-~~wDNN~g~nY~~~V 86 (87)
T PF03423_consen 50 WKATVDVP-ED-AYVMDFVFNDGA-GNWDNNNGANYHFPV 86 (87)
T ss_dssp EEEEEE---TT-TSEEEEEEE-SS-S-EESTTTS-EEEES
T ss_pred EEEEEEEc-CC-ceEEEEEEcCCC-CcEeCCCCccEEEEc
Confidence 44667766 34 447999999994 489999999999975
No 60
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=94.83 E-value=0.21 Score=54.92 Aligned_cols=132 Identities=17% Similarity=0.183 Sum_probs=75.5
Q ss_pred CCHHHHHHhHHHHHhcC--CCEEEECCCCCCCCCCCCCcccCCccCC-CCCCHHHHHHHHHHHHHcCCEEEeeeeecccc
Q 004353 524 RWYMELKEKATELSSLG--FSVIWLPPPTESVSPEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHRC 600 (759)
Q Consensus 524 g~l~GI~ekLdYLk~LG--vtaIwL~PIf~s~s~hGYdp~Dy~~Idp-~~GT~edfk~LV~aaH~~GIkVIlDvV~NH~~ 600 (759)
.+-+.+.+.++.+++.| +++|||---+ ....++ .-+..|+ +|- +.++||+++|++|+||++-+. -+++
T Consensus 21 ~~~~ev~~~~~~~~~~~iP~d~i~lD~~~--~~~~~~---~~f~~d~~~FP---dp~~mi~~L~~~G~kv~~~i~-P~v~ 91 (319)
T cd06591 21 KTQEELLDVAKEYRKRGIPLDVIVQDWFY--WPKQGW---GEWKFDPERFP---DPKAMVRELHEMNAELMISIW-PTFG 91 (319)
T ss_pred CCHHHHHHHHHHHHHhCCCccEEEEechh--hcCCCc---eeEEEChhhCC---CHHHHHHHHHHCCCEEEEEec-CCcC
Confidence 46778888888888875 5888885211 111221 1234443 454 457999999999999999543 3344
Q ss_pred cc---cccc-CCCccccCCCCCCCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCccEE
Q 004353 601 AH---YQNQ-NGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGW 676 (759)
Q Consensus 601 ~~---~~~~-~~~w~~~~~~~~w~~~~~~~~~~~f~~~g~~~~~~~~~~lpdLn~~np~Vr~~i~d~l~~Wi~e~GVDGF 676 (759)
.+ |... ...+..... +...+. ..+.+. ..-+|+.||+.++...+.++..+.++|||||
T Consensus 92 ~~~~~y~e~~~~g~~v~~~-----------~g~~~~-----~~w~g~--~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~ 153 (319)
T cd06591 92 PETENYKEMDEKGYLIKTD-----------RGPRVT-----MQFGGN--TRFYDATNPEAREYYWKQLKKNYYDKGVDAW 153 (319)
T ss_pred CCChhHHHHHHCCEEEEcC-----------CCCeee-----eeCCCC--ccccCCCCHHHHHHHHHHHHHHhhcCCCcEE
Confidence 32 1110 011110000 000000 011111 2346779999999887766544448999999
Q ss_pred EEeccC
Q 004353 677 RLDFVR 682 (759)
Q Consensus 677 RlD~ak 682 (759)
=+|...
T Consensus 154 w~D~~E 159 (319)
T cd06591 154 WLDAAE 159 (319)
T ss_pred EecCCC
Confidence 999975
No 61
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=94.74 E-value=0.26 Score=54.14 Aligned_cols=134 Identities=16% Similarity=0.083 Sum_probs=76.7
Q ss_pred HHHHHHhHHHHHhcCC--CEEEECCCCCCCCCCCCCcccCCccCC-CCCCHHHHHHHHHHHHHcCCEEEeeeeecccccc
Q 004353 526 YMELKEKATELSSLGF--SVIWLPPPTESVSPEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAH 602 (759)
Q Consensus 526 l~GI~ekLdYLk~LGv--taIwL~PIf~s~s~hGYdp~Dy~~Idp-~~GT~edfk~LV~aaH~~GIkVIlDvV~NH~~~~ 602 (759)
-+.+.+-++.+++.|| ++|||-+-+.......+ .+ +..|+ +|- +.++||+++|++|+||++-+.+- ++.+
T Consensus 28 q~~v~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~--~~-f~~d~~~FP---dp~~mi~~L~~~g~k~~~~i~P~-i~~~ 100 (317)
T cd06599 28 QEALLEFIDKCREHDIPCDSFHLSSGYTSIEGGKR--YV-FNWNKDRFP---DPAAFVAKFHERGIRLAPNIKPG-LLQD 100 (317)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEeccccccCCCce--ee-eecCcccCC---CHHHHHHHHHHCCCEEEEEeCCc-ccCC
Confidence 5688888999999887 89998642221100001 11 34443 454 57899999999999999855433 3321
Q ss_pred ---cccc-CCCccccCCCCCCCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCccEEEE
Q 004353 603 ---YQNQ-NGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRL 678 (759)
Q Consensus 603 ---~~~~-~~~w~~~~~~~~w~~~~~~~~~~~f~~~g~~~~~~~~~~lpdLn~~np~Vr~~i~d~l~~Wi~e~GVDGFRl 678 (759)
|... ...+..... . ....+. +.. +.+.. .-+|+.||+.++...+.++..+.+.|||||=+
T Consensus 101 ~~~y~e~~~~g~~v~~~-----~-----g~~~~~--~~~--w~g~~--~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~ 164 (317)
T cd06599 101 HPRYKELKEAGAFIKPP-----D-----GREPSI--GQF--WGGVG--SFVDFTNPEGREWWKEGVKEALLDLGIDSTWN 164 (317)
T ss_pred CHHHHHHHHCCcEEEcC-----C-----CCCcce--ecc--cCCCe--EeecCCChHHHHHHHHHHHHHHhcCCCcEEEe
Confidence 1110 001110000 0 000000 011 11111 23677899999999998865555899999999
Q ss_pred eccC
Q 004353 679 DFVR 682 (759)
Q Consensus 679 D~ak 682 (759)
|...
T Consensus 165 D~~E 168 (317)
T cd06599 165 DNNE 168 (317)
T ss_pred cCCC
Confidence 9863
No 62
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=94.64 E-value=0.3 Score=53.73 Aligned_cols=132 Identities=14% Similarity=0.176 Sum_probs=84.2
Q ss_pred CCHHHHHHhHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccC-CCCCC----HHHHHHHHHHHHHcCCEEEeeeeecc
Q 004353 524 RWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLS-SRYGN----IDELKDVVNKFHDVGMKILGDVVLNH 598 (759)
Q Consensus 524 g~l~GI~ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Id-p~~GT----~edfk~LV~aaH~~GIkVIlDvV~NH 598 (759)
++-..+.+.|+.|++-|+|+|-+- -...+|+-..+.-... ...|. ..|+++|++++|++||++|.=+|.=-
T Consensus 10 ~~~~~~~~~~~~i~~t~lNavVID----vKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IARIv~Fk 85 (316)
T PF13200_consen 10 GSPERLDKLLDLIKRTELNAVVID----VKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIARIVVFK 85 (316)
T ss_pred CCHHHHHHHHHHHHhcCCceEEEE----EecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEEEEEEec
Confidence 445678888999999999999764 2234443322211111 11222 36899999999999999999887311
Q ss_pred cccc-ccccCCCccccCCCCCCCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCccEEE
Q 004353 599 RCAH-YQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWR 677 (759)
Q Consensus 599 ~~~~-~~~~~~~w~~~~~~~~w~~~~~~~~~~~f~~~g~~~~~~~~~~lpdLn~~np~Vr~~i~d~l~~Wi~e~GVDGFR 677 (759)
+. ....+++|.... .....|.+..+..-+|--+++|++|+++.++... ..|+|.+-
T Consensus 86 --D~~la~~~pe~av~~--------------------~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa-~~GFdEIq 142 (316)
T PF13200_consen 86 --DPVLAEAHPEWAVKT--------------------KDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAA-KLGFDEIQ 142 (316)
T ss_pred --ChHHhhhChhhEEEC--------------------CCCCcccCCCCCccCCCCCHHHHHHHHHHHHHHH-HcCCCEEE
Confidence 00 011233332200 0111122233345677889999999999999988 88999999
Q ss_pred EeccC
Q 004353 678 LDFVR 682 (759)
Q Consensus 678 lD~ak 682 (759)
||-+.
T Consensus 143 fDYIR 147 (316)
T PF13200_consen 143 FDYIR 147 (316)
T ss_pred eeeee
Confidence 99984
No 63
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=94.21 E-value=0.24 Score=54.47 Aligned_cols=131 Identities=18% Similarity=0.137 Sum_probs=78.7
Q ss_pred CCHHHHHHhHHHHHhcCC--CEEEECCCCCCCCCCCCCcccCCccCC-CCCCHHHHHHHHHHHHHcCCEEEeeeeecccc
Q 004353 524 RWYMELKEKATELSSLGF--SVIWLPPPTESVSPEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHRC 600 (759)
Q Consensus 524 g~l~GI~ekLdYLk~LGv--taIwL~PIf~s~s~hGYdp~Dy~~Idp-~~GT~edfk~LV~aaH~~GIkVIlDvV~NH~~ 600 (759)
.+-+.+.+.++.+++.|| +.|||-.=+. .+|. .+..|+ +|- +.++||+++|++|+||++=+.+ +++
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~----~~~~---~f~~d~~~FP---dp~~~i~~l~~~g~k~~~~~~P-~i~ 89 (317)
T cd06600 21 YPQDKVVEVVDIMQKEGFPYDVVFLDIHYM----DSYR---LFTWDPYRFP---EPKKLIDELHKRNVKLVTIVDP-GIR 89 (317)
T ss_pred CCHHHHHHHHHHHHHcCCCcceEEEChhhh----CCCC---ceeechhcCC---CHHHHHHHHHHCCCEEEEEeec-ccc
Confidence 357788999999998887 8898863221 1222 133343 443 5689999999999999985543 333
Q ss_pred cc-----cccc-CCCccccCCCCCCCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcc
Q 004353 601 AH-----YQNQ-NGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYD 674 (759)
Q Consensus 601 ~~-----~~~~-~~~w~~~~~~~~w~~~~~~~~~~~f~~~g~~~~~~~~~~lpdLn~~np~Vr~~i~d~l~~Wi~e~GVD 674 (759)
.+ |... ...+.... .+...+. + ..|.+.. .-+|+.||+.++...+.++..+.+.|||
T Consensus 90 ~~~~~~~~~~~~~~~~~v~~-----------~~g~~~~--~--~~w~G~~--~~~Dftnp~a~~ww~~~~~~~~~~~gvd 152 (317)
T cd06600 90 VDQNYSPFLSGMDKGKFCEI-----------ESGELFV--G--KMWPGTT--VYPDFTNPDTREWWAGLFSEWLNSQGVD 152 (317)
T ss_pred CCCCChHHHHHHHCCEEEEC-----------CCCCeEE--E--eecCCCc--cccCCCChHHHHHHHHHHHHHhhcCCCc
Confidence 21 1100 00000000 0000010 0 0111111 2367789999999999988887789999
Q ss_pred EEEEeccC
Q 004353 675 GWRLDFVR 682 (759)
Q Consensus 675 GFRlD~ak 682 (759)
||=+|...
T Consensus 153 g~w~D~~E 160 (317)
T cd06600 153 GIWLDMNE 160 (317)
T ss_pred eEEeeCCC
Confidence 99999976
No 64
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=93.94 E-value=0.56 Score=52.10 Aligned_cols=139 Identities=17% Similarity=0.207 Sum_probs=77.0
Q ss_pred CHHHHHHhHHHHHhcCC--CEEEECCCCCCCCCCCCCcccCCccCC-CCCCHHHH--HHHHHHHHHcCCEEEeeeeeccc
Q 004353 525 WYMELKEKATELSSLGF--SVIWLPPPTESVSPEGYMPRDLYNLSS-RYGNIDEL--KDVVNKFHDVGMKILGDVVLNHR 599 (759)
Q Consensus 525 ~l~GI~ekLdYLk~LGv--taIwL~PIf~s~s~hGYdp~Dy~~Idp-~~GT~edf--k~LV~aaH~~GIkVIlDvV~NH~ 599 (759)
+-+.+.+.++.+++.|| +.|||-.-+.. +|. | +..|+ +|- +. ++||+++|++|+||++=+.+ |+
T Consensus 22 ~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~----~~~--~-f~~d~~~FP---dp~~~~mi~~L~~~G~k~~~~i~P-~v 90 (339)
T cd06602 22 NVDEVKEVVENMRAAGIPLDVQWNDIDYMD----RRR--D-FTLDPVRFP---GLKMPEFVDELHANGQHYVPILDP-AI 90 (339)
T ss_pred CHHHHHHHHHHHHHhCCCcceEEECccccc----Ccc--c-eecccccCC---CccHHHHHHHHHHCCCEEEEEEeC-cc
Confidence 46788899999998876 88988542211 111 1 23332 333 34 99999999999999996543 33
Q ss_pred cccccccCCCccccCCCCCCCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCccEEEEe
Q 004353 600 CAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLD 679 (759)
Q Consensus 600 ~~~~~~~~~~w~~~~~~~~w~~~~~~~~~~~f~~~g~~~~~~~~~~lpdLn~~np~Vr~~i~d~l~~Wi~e~GVDGFRlD 679 (759)
..+- ....+..+..-..-...-...+...+.+ ..|.+... -+|+.||++++...+.++.++.++|||||=+|
T Consensus 91 ~~~~--~~~~~~~~~e~~~~g~~v~~~~g~~~~~----~~w~g~~~--~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D 162 (339)
T cd06602 91 SANE--PTGSYPPYDRGLEMDVFIKNDDGSPYIG----KVWPGYTV--FPDFLNPNTQEWWTDEIKDFHDQVPFDGLWID 162 (339)
T ss_pred ccCc--CCCCCHHHHHHHHCCeEEECCCCCEEEE----EeCCCCCc--CcCCCCHHHHHHHHHHHHHHHhcCCCcEEEec
Confidence 2210 0001101100000000000000000000 11112222 25678999999999999888877999999999
Q ss_pred ccC
Q 004353 680 FVR 682 (759)
Q Consensus 680 ~ak 682 (759)
...
T Consensus 163 ~~E 165 (339)
T cd06602 163 MNE 165 (339)
T ss_pred CCC
Confidence 875
No 65
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=93.93 E-value=0.3 Score=53.63 Aligned_cols=133 Identities=11% Similarity=0.008 Sum_probs=76.7
Q ss_pred CHHHHHHhHHHHHhcCC--CEEEECCCCCCC-C-CCCCCcccCCccC-CCCCCHHHHHHHHHHHHHcCCEEEeeeeeccc
Q 004353 525 WYMELKEKATELSSLGF--SVIWLPPPTESV-S-PEGYMPRDLYNLS-SRYGNIDELKDVVNKFHDVGMKILGDVVLNHR 599 (759)
Q Consensus 525 ~l~GI~ekLdYLk~LGv--taIwL~PIf~s~-s-~hGYdp~Dy~~Id-p~~GT~edfk~LV~aaH~~GIkVIlDvV~NH~ 599 (759)
+-+.+.+.++.+++.|| ++|||-.=+-.. . ...|. | +..| .+|- +.++||+++|++|+||++=+.+- +
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~--~-f~wd~~~FP---dp~~mi~~L~~~G~k~~~~v~P~-v 94 (317)
T cd06598 22 NWQEVDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMG--N-LDWDRKAFP---DPAGMIADLAKKGVKTIVITEPF-V 94 (317)
T ss_pred CHHHHHHHHHHHHHhCCCceEEEEechhhcCcccCCcee--e-eEeccccCC---CHHHHHHHHHHcCCcEEEEEcCc-c
Confidence 46788899999988876 888886522110 0 01111 1 3334 3454 45789999999999999976432 2
Q ss_pred ccc---ccc--cCCCccccCCCCCCCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcc
Q 004353 600 CAH---YQN--QNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYD 674 (759)
Q Consensus 600 ~~~---~~~--~~~~w~~~~~~~~w~~~~~~~~~~~f~~~g~~~~~~~~~~lpdLn~~np~Vr~~i~d~l~~Wi~e~GVD 674 (759)
..+ |.. +++.+..-. .....+. ...|.+.... +|+.||+.++.+.+.++.++ +.|||
T Consensus 95 ~~~~~~y~e~~~~g~l~~~~-----------~~~~~~~----~~~w~g~~~~--~Dftnp~a~~w~~~~~~~~~-~~Gvd 156 (317)
T cd06598 95 LKNSKNWGEAVKAGALLKKD-----------QGGVPTL----FDFWFGNTGL--IDWFDPAAQAWFHDNYKKLI-DQGVT 156 (317)
T ss_pred cCCchhHHHHHhCCCEEEEC-----------CCCCEee----eeccCCCccc--cCCCCHHHHHHHHHHHHHhh-hCCcc
Confidence 211 111 011100000 0000000 0011122233 45589999999999888886 89999
Q ss_pred EEEEeccC
Q 004353 675 GWRLDFVR 682 (759)
Q Consensus 675 GFRlD~ak 682 (759)
||=+|+-.
T Consensus 157 g~w~D~~E 164 (317)
T cd06598 157 GWWGDLGE 164 (317)
T ss_pred EEEecCCC
Confidence 99999964
No 66
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=93.69 E-value=0.64 Score=56.05 Aligned_cols=132 Identities=9% Similarity=0.035 Sum_probs=72.7
Q ss_pred HHHHHHhHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHH-HHH-HHHHHHHcCCEEEeeeeeccccccc
Q 004353 526 YMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDE-LKD-VVNKFHDVGMKILGDVVLNHRCAHY 603 (759)
Q Consensus 526 l~GI~ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Idp~~GT~ed-fk~-LV~aaH~~GIkVIlDvV~NH~~~~~ 603 (759)
-+.+...|+.|+++|+|+|+|..+.+..+ .|....- |-++.++-..++ |-. .-+-+|++|++|..=+-+=-.+-.
T Consensus 333 ~~~L~~lLdrlk~~G~ntV~lqafadp~g-d~~~~s~-yfP~~~lp~r~d~f~~~aw~l~~r~~v~v~AWmp~~~~~~~- 409 (671)
T PRK14582 333 DRNIDVLIQRVKDMQISTVYLQAFADPDG-DGLVKEL-YFPNRLLPMRADLFNRVAWQLRTRAGVNVYAWMPVLSFDLD- 409 (671)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeccCCCC-Ccccccc-ccCccccccccCCcCHHHHHHHHhhCCEEEEeccceeeccC-
Confidence 57889999999999999999997655433 3322221 222222222221 211 112289999999863322111100
Q ss_pred cccCCCccccCCCCCCCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCccEEEEec
Q 004353 604 QNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDF 680 (759)
Q Consensus 604 ~~~~~~w~~~~~~~~w~~~~~~~~~~~f~~~g~~~~~~~~~~lpdLn~~np~Vr~~i~d~l~~Wi~e~GVDGFRlD~ 680 (759)
...+. ...+.. .......+. .| ...|+-.+|+||+.|.++...+++.+.|||+-||-
T Consensus 410 -~~~~~------~~~~~~---~~~~~~~~~-----~~-----~~rl~P~~pe~r~~i~~i~~dla~~~~~dGilf~D 466 (671)
T PRK14582 410 -PTLPR------VKRLDT---GEGKAQIHP-----EQ-----YRRLSPFDDRVRAQVGMLYEDLAGHAAFDGILFHD 466 (671)
T ss_pred -CCcch------hhhccc---cCCccccCC-----CC-----CcCCCCCCHHHHHHHHHHHHHHHHhCCCceEEecc
Confidence 00000 000000 000000000 00 12378889999999999999999888999999975
No 67
>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A.
Probab=93.58 E-value=0.11 Score=61.47 Aligned_cols=67 Identities=27% Similarity=0.457 Sum_probs=44.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHH---------cCCccEEEEeccCcccHHHHHHH----HHh---C------CCc
Q 004353 642 NFHAAPNIDHSQDFVRKDIKEWLCWLRN---------EIGYDGWRLDFVRGFWGGYVKDY----LEA---T------EPY 699 (759)
Q Consensus 642 ~~~~lpdLn~~np~Vr~~i~d~l~~Wi~---------e~GVDGFRlD~ak~f~~~~~~~~----~~~---~------p~~ 699 (759)
.|.-..|+|-+||.|+...+.|+.|++. +..+||||+|||..+-.+.+... +++ . -.-
T Consensus 139 EfLLaNDVDNSNPvVQAEqLNwl~yLmN~GsI~~~d~daNFDgiRVDAvDNVdADlLqia~dyfkaaYgv~~~~a~An~H 218 (809)
T PF02324_consen 139 EFLLANDVDNSNPVVQAEQLNWLHYLMNFGSITANDPDANFDGIRVDAVDNVDADLLQIAGDYFKAAYGVDKNDANANKH 218 (809)
T ss_dssp S--SSEEE-TTSHHHHHHHHHHHHHHHTHHHHHHS-TTSS--EEEETTGGGS-THHHHHHHHHHHHHH-TTTBHHHHCTC
T ss_pred eeEEeccccCCCchhhHHHHHHHHHHhhccccccCCCCCCcccEEeecccccCHHHHHHHHHHHHHHhCCCcChhhHhhh
Confidence 4555678999999999999999999996 67899999999987655544321 111 1 256
Q ss_pred EEEEeecCC
Q 004353 700 FAVGEYWDS 708 (759)
Q Consensus 700 ~lvGE~w~~ 708 (759)
+.|=|.|..
T Consensus 219 lSilE~ws~ 227 (809)
T PF02324_consen 219 LSILEAWSS 227 (809)
T ss_dssp --EESSSTT
T ss_pred heeeecccc
Confidence 778899986
No 68
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=93.14 E-value=0.44 Score=47.70 Aligned_cols=85 Identities=14% Similarity=0.253 Sum_probs=55.8
Q ss_pred eecccccccCCCCCCHHHHHHhHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCEE
Q 004353 511 LCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKI 590 (759)
Q Consensus 511 ~~~~F~Wds~~~Gg~l~GI~ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIkV 590 (759)
+++-++||. ..--+-+.-.+.+.+++++||++|-|. ..+-...-+.|.+++.-.=..+..+-+..+.++|.+.||+|
T Consensus 5 F~q~~~~d~-~~~~~~~~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv 81 (166)
T PF14488_consen 5 FLQPWSWDI-HQNWTPAQWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKV 81 (166)
T ss_pred EEccccchh-hcCCCHHHHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEE
Confidence 455555544 222346777889999999999999987 21111222334444211222356778999999999999999
Q ss_pred Eeeeeecc
Q 004353 591 LGDVVLNH 598 (759)
Q Consensus 591 IlDvV~NH 598 (759)
++-+-++.
T Consensus 82 ~~Gl~~~~ 89 (166)
T PF14488_consen 82 FVGLYFDP 89 (166)
T ss_pred EEeCCCCc
Confidence 99777664
No 69
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=92.73 E-value=0.75 Score=50.94 Aligned_cols=129 Identities=19% Similarity=0.246 Sum_probs=77.9
Q ss_pred CHHHHHHhHHHHHhcCC--CEEEECCCCCCCCCCCCCcccCCccCC-CCCCHHHHHHHHHHHHHcCCEEEeeeeeccccc
Q 004353 525 WYMELKEKATELSSLGF--SVIWLPPPTESVSPEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 601 (759)
Q Consensus 525 ~l~GI~ekLdYLk~LGv--taIwL~PIf~s~s~hGYdp~Dy~~Idp-~~GT~edfk~LV~aaH~~GIkVIlDvV~NH~~~ 601 (759)
+-+.+.+.++.+++.|| ++|||-.-+.. +|.. +..|+ +|- +.++|++++|++|++|++=+.+ |+..
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~----~~~~---f~~d~~~fP---dp~~m~~~l~~~g~~~~~~~~P-~v~~ 90 (339)
T cd06604 22 PEEEVREIADEFRERDIPCDAIYLDIDYMD----GYRV---FTWDKERFP---DPKELIKELHEQGFKVVTIIDP-GVKV 90 (339)
T ss_pred CHHHHHHHHHHHHHhCCCcceEEECchhhC----CCCc---eeeccccCC---CHHHHHHHHHHCCCEEEEEEeC-ceeC
Confidence 46788899999999887 89998754331 2321 33444 554 4689999999999999976543 3321
Q ss_pred c-----cccc-CCCccccCCCCCCCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCccE
Q 004353 602 H-----YQNQ-NGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDG 675 (759)
Q Consensus 602 ~-----~~~~-~~~w~~~~~~~~w~~~~~~~~~~~f~~~g~~~~~~~~~~lpdLn~~np~Vr~~i~d~l~~Wi~e~GVDG 675 (759)
+ |... ...+.... .+...+.+ ..|.+... -+|+.||+.++...+.++..+ +.||||
T Consensus 91 ~~~~~~~~e~~~~g~~v~~-----------~~g~~~~~----~~w~g~~~--~~Dftnp~a~~ww~~~~~~~~-~~Gvdg 152 (339)
T cd06604 91 DPGYDVYEEGLENDYFVKD-----------PDGELYIG----RVWPGLSA--FPDFTNPKVREWWGSLYKKFV-DLGVDG 152 (339)
T ss_pred CCCChHHHHHHHCCeEEEC-----------CCCCEEEE----EecCCCcc--ccCCCChHHHHHHHHHHHHHh-hCCCce
Confidence 1 1100 00010000 00000000 01111122 357789999999999888887 899999
Q ss_pred EEEeccC
Q 004353 676 WRLDFVR 682 (759)
Q Consensus 676 FRlD~ak 682 (759)
|=+|...
T Consensus 153 ~w~D~~E 159 (339)
T cd06604 153 IWNDMNE 159 (339)
T ss_pred EeecCCC
Confidence 9999753
No 70
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=92.45 E-value=0.58 Score=53.46 Aligned_cols=136 Identities=24% Similarity=0.345 Sum_probs=74.7
Q ss_pred CCHHHHHHhHHHHHhcCC--CEEEECCCCCCCCCCCCCcccCCccCC-CCCCHHHHHHHHHHHHHcCCEEEeeeeecccc
Q 004353 524 RWYMELKEKATELSSLGF--SVIWLPPPTESVSPEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHRC 600 (759)
Q Consensus 524 g~l~GI~ekLdYLk~LGv--taIwL~PIf~s~s~hGYdp~Dy~~Idp-~~GT~edfk~LV~aaH~~GIkVIlDvV~NH~~ 600 (759)
.+-+.+.+.++.+++.|| ++|+|-.-+.. +|. | +..|+ +|- ++++|++.+|++|++|++-+.+ ++.
T Consensus 40 ~~~~~v~~~i~~~~~~~iP~d~~~iD~~~~~----~~~--~-f~~d~~~FP---d~~~~~~~l~~~G~~~~~~~~P-~v~ 108 (441)
T PF01055_consen 40 YNQDEVREVIDRYRSNGIPLDVIWIDDDYQD----GYG--D-FTWDPERFP---DPKQMIDELHDQGIKVVLWVHP-FVS 108 (441)
T ss_dssp TSHHHHHHHHHHHHHTT--EEEEEE-GGGSB----TTB--T-T-B-TTTTT---THHHHHHHHHHTT-EEEEEEES-EEE
T ss_pred CCHHHHHHHHHHHHHcCCCccceeccccccc----ccc--c-ccccccccc---chHHHHHhHhhCCcEEEEEeec-ccC
Confidence 457788899999988777 77877654321 122 2 34443 343 7899999999999999998877 333
Q ss_pred ccccccCCCccccCC--CCCCCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCccEEEE
Q 004353 601 AHYQNQNGVWNIFGG--RLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRL 678 (759)
Q Consensus 601 ~~~~~~~~~w~~~~~--~~~w~~~~~~~~~~~f~~~g~~~~~~~~~~lpdLn~~np~Vr~~i~d~l~~Wi~e~GVDGFRl 678 (759)
..-. .+..+.. ..++--. ..+...+.+ ..|.+. ..-+|+.||++++.+.+.++.+++.+|||||-+
T Consensus 109 ~~~~----~~~~~~~~~~~~~~v~--~~~g~~~~~----~~w~g~--~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~ 176 (441)
T PF01055_consen 109 NDSP----DYENYDEAKEKGYLVK--NPDGSPYIG----RVWPGK--GGFIDFTNPEARDWWKEQLKELLDDYGVDGWWL 176 (441)
T ss_dssp TTTT----B-HHHHHHHHTT-BEB--CTTSSB-EE----EETTEE--EEEB-TTSHHHHHHHHHHHHHHHTTST-SEEEE
T ss_pred CCCC----cchhhhhHhhcCceee--cccCCcccc----cccCCc--ccccCCCChhHHHHHHHHHHHHHhccCCceEEe
Confidence 2100 0000000 0000000 000000000 001111 234667899999999999999997779999999
Q ss_pred eccC
Q 004353 679 DFVR 682 (759)
Q Consensus 679 D~ak 682 (759)
|...
T Consensus 177 D~~E 180 (441)
T PF01055_consen 177 DFGE 180 (441)
T ss_dssp ESTT
T ss_pred ecCC
Confidence 9943
No 71
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=91.67 E-value=0.23 Score=52.14 Aligned_cols=60 Identities=20% Similarity=0.364 Sum_probs=43.4
Q ss_pred HHHHhHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccCCC--CC--CHHHHHHHHHHHHHcCCEEEeeeeec
Q 004353 528 ELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSR--YG--NIDELKDVVNKFHDVGMKILGDVVLN 597 (759)
Q Consensus 528 GI~ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Idp~--~G--T~edfk~LV~aaH~~GIkVIlDvV~N 597 (759)
-+.+-++.++++|+++|=|+-.+.. |. .-+|. +. ..+.|+++|++|+++||+||+|+--.
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~~~-----~~-----~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~ 85 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGWEA-----YQ-----EPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHNA 85 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEESTS-----TS-----TTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEES
T ss_pred CHHHHHHHHHHCCCCEEEeCCCHHH-----hc-----CCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 7788899999999999998765321 11 11121 12 25789999999999999999988654
No 72
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=91.58 E-value=0.55 Score=52.04 Aligned_cols=56 Identities=18% Similarity=0.271 Sum_probs=38.0
Q ss_pred HHhHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCEEEeeeeecc
Q 004353 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNH 598 (759)
Q Consensus 530 ~ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIkVIlDvV~NH 598 (759)
.+.++.||+.|+|.|=|--... +.. .-+-+.+...+|.++|+++||+|+||+=+..
T Consensus 27 ~d~~~ilk~~G~N~vRlRvwv~-P~~------------~g~~~~~~~~~~akrak~~Gm~vlldfHYSD 82 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRVWVN-PYD------------GGYNDLEDVIALAKRAKAAGMKVLLDFHYSD 82 (332)
T ss_dssp --HHHHHHHTT--EEEEEE-SS--TT------------TTTTSHHHHHHHHHHHHHTT-EEEEEE-SSS
T ss_pred CCHHHHHHhcCCCeEEEEeccC-Ccc------------cccCCHHHHHHHHHHHHHCCCeEEEeecccC
Confidence 5678999999999988753221 111 4455788999999999999999999995544
No 73
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=91.27 E-value=0.63 Score=51.26 Aligned_cols=56 Identities=14% Similarity=0.180 Sum_probs=42.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHcCCccEEEEeccCccc----------------HHHHHHH----HHhCCCcEEE
Q 004353 646 APNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFW----------------GGYVKDY----LEATEPYFAV 702 (759)
Q Consensus 646 lpdLn~~np~Vr~~i~d~l~~Wi~e~GVDGFRlD~ak~f~----------------~~~~~~~----~~~~p~~~lv 702 (759)
--.+|..+++.++.|.+.+...+ +.|+|||=+|.+..+. -.+++.+ ++.+|++.+|
T Consensus 135 ~~~vd~~~~~W~~il~~rl~~l~-~kGfDGvfLD~lDsy~~~~~~~~~~~~~~~~m~~~i~~Ia~~ar~~~P~~~II 210 (315)
T TIGR01370 135 NYDVKYWDPEWKAIAFSYLDRVI-AQGFDGVYLDLIDAFEYWAENGDNRPGAAAEMIAFVCEIAAYARAQNPQFVII 210 (315)
T ss_pred ceeEecccHHHHHHHHHHHHHHH-HcCCCeEeeccchhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHCCCEEEE
Confidence 34678889999999999887766 8999999999987432 1355555 6667887776
No 74
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=90.48 E-value=1.4 Score=47.95 Aligned_cols=129 Identities=11% Similarity=0.100 Sum_probs=74.3
Q ss_pred CCHHHHHHhHHHHHhcCC--CEEEECCCCCCC-----CCCCCCcccCCccCC-CCCCHHHHHHHHHHHHHcCCEEEeeee
Q 004353 524 RWYMELKEKATELSSLGF--SVIWLPPPTESV-----SPEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVV 595 (759)
Q Consensus 524 g~l~GI~ekLdYLk~LGv--taIwL~PIf~s~-----s~hGYdp~Dy~~Idp-~~GT~edfk~LV~aaH~~GIkVIlDvV 595 (759)
.+.+.+.+-++.+++.|| ++|||=-=+... ...+|. -+..|+ +|- +.++||+++|++|+|||+-+.
T Consensus 22 ~s~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~---~ft~d~~~FP---dp~~mi~~Lh~~G~k~v~~v~ 95 (292)
T cd06595 22 YSDEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWT---GYSWNRKLFP---DPEKLLQDLHDRGLKVTLNLH 95 (292)
T ss_pred CCHHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcc---eeEEChhcCC---CHHHHHHHHHHCCCEEEEEeC
Confidence 357888999999988776 888884322110 001222 144443 453 568999999999999998776
Q ss_pred eccccccccccCCCccccCCCCCCCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCccE
Q 004353 596 LNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDG 675 (759)
Q Consensus 596 ~NH~~~~~~~~~~~w~~~~~~~~w~~~~~~~~~~~f~~~g~~~~~~~~~~lpdLn~~np~Vr~~i~d~l~~Wi~e~GVDG 675 (759)
+....... ...|..+... .... ... ....-+|..||+.++...+.+..-+.++||||
T Consensus 96 P~~~~~~~---~~~y~~~~~~------------~~~~----~~~----~~~~~~D~tnp~a~~~w~~~~~~~~~~~Gidg 152 (292)
T cd06595 96 PADGIRAH---EDQYPEMAKA------------LGVD----PAT----EGPILFDLTNPKFMDAYFDNVHRPLEKQGVDF 152 (292)
T ss_pred CCcccCCC---cHHHHHHHHh------------cCCC----ccc----CCeEEecCCCHHHHHHHHHHHHHHHHhcCCcE
Confidence 64311100 0000000000 0000 000 01124678899998876665544444899999
Q ss_pred EEEecc
Q 004353 676 WRLDFV 681 (759)
Q Consensus 676 FRlD~a 681 (759)
|=.|+.
T Consensus 153 ~W~D~~ 158 (292)
T cd06595 153 WWLDWQ 158 (292)
T ss_pred EEecCC
Confidence 999974
No 75
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=90.35 E-value=0.45 Score=60.86 Aligned_cols=57 Identities=14% Similarity=0.198 Sum_probs=48.9
Q ss_pred CCHHHHHHHHHHHHHHHHcCCccEEEEeccC----cccHHHHHHHHHhCCCcEEEEeecCCCC
Q 004353 652 SQDFVRKDIKEWLCWLRNEIGYDGWRLDFVR----GFWGGYVKDYLEATEPYFAVGEYWDSLS 710 (759)
Q Consensus 652 ~np~Vr~~i~d~l~~Wi~e~GVDGFRlD~ak----~f~~~~~~~~~~~~p~~~lvGE~w~~~~ 710 (759)
++|.++++|.++.+-..+ =++|||+|.++ |+-..++++-++.+|++|+++|.+.+..
T Consensus 487 DsP~LW~~M~~Y~~~~Ak--iF~G~RiDNCHSTPlhVaeylLd~AR~vnPnLyV~AELFTGSe 547 (1464)
T TIGR01531 487 DSPYLWQHMKEYTEMTAR--IFDGVRIDNCHSTPIHVAEYLLDAARKYNPNLYVVAELFTGSE 547 (1464)
T ss_pred CCHHHHHHHHHHHHHHHH--hhcceeeecccCCcHHHHHHHHHHHhhcCCCeEEEeeecCCcH
Confidence 579999999999988874 58999999998 5666777777888999999999998743
No 76
>PRK10426 alpha-glucosidase; Provisional
Probab=90.14 E-value=1.2 Score=53.62 Aligned_cols=133 Identities=18% Similarity=0.295 Sum_probs=74.6
Q ss_pred HHHHHHhHHHHHhcCC--CEEEECCCCCCCC--CCCCCcc-cCCccCC-CCCCHHHHHHHHHHHHHcCCEEEeeeeeccc
Q 004353 526 YMELKEKATELSSLGF--SVIWLPPPTESVS--PEGYMPR-DLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHR 599 (759)
Q Consensus 526 l~GI~ekLdYLk~LGv--taIwL~PIf~s~s--~hGYdp~-Dy~~Idp-~~GT~edfk~LV~aaH~~GIkVIlDvV~NH~ 599 (759)
-+.+.+.++.+++.|| ++|||. -+.... ..|+... | +..|+ +|- +.++||+++|++|+||++=+-+- +
T Consensus 220 ~~~v~~v~~~~r~~~IP~d~i~ld-dw~~~~~~~~g~~~~~~-~~~d~~~FP---dp~~mi~~L~~~G~k~v~~i~P~-v 293 (635)
T PRK10426 220 TEVVQKKLDTMRNAGVKVNGIWAQ-DWSGIRMTSFGKRLMWN-WKWDSERYP---QLDSRIKQLNEEGIQFLGYINPY-L 293 (635)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEe-ccccccccccccccccc-ceEChhhCC---CHHHHHHHHHHCCCEEEEEEcCc-c
Confidence 4578888999999885 999995 221110 0111100 1 12232 232 57899999999999999876543 2
Q ss_pred ccc---ccc--cCCCccccCCCCCCCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcc
Q 004353 600 CAH---YQN--QNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYD 674 (759)
Q Consensus 600 ~~~---~~~--~~~~w~~~~~~~~w~~~~~~~~~~~f~~~g~~~~~~~~~~lpdLn~~np~Vr~~i~d~l~~Wi~e~GVD 674 (759)
..+ |.. +++ +.... .+...|.. ..|.+... -+|+.||++|+...+.++..+.+.|||
T Consensus 294 ~~~~~~y~e~~~~g-y~vk~-----------~~g~~~~~----~~~~~~~~--~~Dftnp~ar~Ww~~~~~~~~~~~Gvd 355 (635)
T PRK10426 294 ASDGDLCEEAAEKG-YLAKD-----------ADGGDYLV----EFGEFYAG--VVDLTNPEAYEWFKEVIKKNMIGLGCS 355 (635)
T ss_pred CCCCHHHHHHHHCC-cEEEC-----------CCCCEEEe----EecCCCce--eecCCCHHHHHHHHHHHHHHHhhcCCC
Confidence 211 211 111 10000 00000100 01111222 366789999999999886544589999
Q ss_pred EEEEeccC
Q 004353 675 GWRLDFVR 682 (759)
Q Consensus 675 GFRlD~ak 682 (759)
||=+|+-.
T Consensus 356 g~w~D~~E 363 (635)
T PRK10426 356 GWMADFGE 363 (635)
T ss_pred EEeeeCCC
Confidence 99999743
No 77
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=89.51 E-value=1.2 Score=47.01 Aligned_cols=89 Identities=15% Similarity=0.124 Sum_probs=59.4
Q ss_pred CHHHHHHHHHHHHHcCCEEEeeeeeccccccccccCCCccccCCCCCCCCCcccCCCCCCCCCCCccCCCCCCCCCCCCC
Q 004353 572 NIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDH 651 (759)
Q Consensus 572 T~edfk~LV~aaH~~GIkVIlDvV~NH~~~~~~~~~~~w~~~~~~~~w~~~~~~~~~~~f~~~g~~~~~~~~~~lpdLn~ 651 (759)
+.+++++.++.+|++|+||++=+--+|.+..+ -..
T Consensus 49 ~~~~~~~~i~~l~~kG~KVl~sigg~~~~~~~---------------------------------------------~~~ 83 (255)
T cd06542 49 LLTNKETYIRPLQAKGTKVLLSILGNHLGAGF---------------------------------------------ANN 83 (255)
T ss_pred hhHHHHHHHHHHhhCCCEEEEEECCCCCCCCc---------------------------------------------ccc
Confidence 46889999999999999999976544443210 001
Q ss_pred CCHHHHHHHHHHHHHHHHcCCccEEEEeccC-------------cccHHHHHHHHHhCC--CcEEEEee
Q 004353 652 SQDFVRKDIKEWLCWLRNEIGYDGWRLDFVR-------------GFWGGYVKDYLEATE--PYFAVGEY 705 (759)
Q Consensus 652 ~np~Vr~~i~d~l~~Wi~e~GVDGFRlD~ak-------------~f~~~~~~~~~~~~p--~~~lvGE~ 705 (759)
.++.-++.+.+.+..++++||+||+=+|-=. .....+++++++..+ +.++.-..
T Consensus 84 ~~~~~~~~fa~~l~~~v~~yglDGiDiD~E~~~~~~~~~~~~~~~~~~~lv~~Lr~~~~~~~kllt~~~ 152 (255)
T cd06542 84 LSDAAAKAYAKAIVDTVDKYGLDGVDFDDEYSGYGKNGTSQPSNEAFVRLIKELRKYMGPTDKLLTIDG 152 (255)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCceEEeeeecccCCCCCCcchHHHHHHHHHHHHHHhCcCCcEEEEEe
Confidence 2455577777777777889999999999631 123356677777664 44443333
No 78
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=89.26 E-value=2.1 Score=53.62 Aligned_cols=134 Identities=17% Similarity=0.196 Sum_probs=76.5
Q ss_pred CHHHHHHhHHHHHhcCC--CEEEECCCCCCCCCCCCCcccCCccCC-CCCCHHHHHHHHHHHHHcCCEEEeeeeeccccc
Q 004353 525 WYMELKEKATELSSLGF--SVIWLPPPTESVSPEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 601 (759)
Q Consensus 525 ~l~GI~ekLdYLk~LGv--taIwL~PIf~s~s~hGYdp~Dy~~Idp-~~GT~edfk~LV~aaH~~GIkVIlDvV~NH~~~ 601 (759)
+-+.+.+-++.+++.|| ++|||--=+ ..||.. |..|+ +|- +.++|++++|++|+|+|.=+.+ ++..
T Consensus 199 sq~eV~eva~~fre~~IP~DvIwlDidY----m~g~~~---FTwD~~rFP---dP~~mv~~Lh~~G~kvv~iidP-gI~~ 267 (978)
T PLN02763 199 SAKRVAEIARTFREKKIPCDVVWMDIDY----MDGFRC---FTFDKERFP---DPKGLADDLHSIGFKAIWMLDP-GIKA 267 (978)
T ss_pred CHHHHHHHHHHHHHcCCCceEEEEehhh----hcCCCc---eeECcccCC---CHHHHHHHHHHCCCEEEEEEcC-CCcc
Confidence 46788888899988887 889986311 123332 45554 564 4689999999999999764322 2211
Q ss_pred cccccCCCccccCCCCCCCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCccEEEEecc
Q 004353 602 HYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFV 681 (759)
Q Consensus 602 ~~~~~~~~w~~~~~~~~w~~~~~~~~~~~f~~~g~~~~~~~~~~lpdLn~~np~Vr~~i~d~l~~Wi~e~GVDGFRlD~a 681 (759)
...|..+.....-+..-...+...|.+ ..|.+....| |+.||.+|+...+.++.++ +.|||||=+|+-
T Consensus 268 -----d~gY~~y~eg~~~~~fvk~~~G~~y~G----~vWpG~~~fp--DFTnP~ar~WW~~~~k~l~-d~GVDG~W~Dmn 335 (978)
T PLN02763 268 -----EEGYFVYDSGCENDVWIQTADGKPFVG----EVWPGPCVFP--DFTNKKTRSWWANLVKDFV-SNGVDGIWNDMN 335 (978)
T ss_pred -----CCCCHHHHhHhhcCeeEECCCCCeeEe----eecCCCcccc--CCCCHHHHHHHHHHHHHHh-cCCCcEEEccCC
Confidence 111111110000000000000111110 1122222334 5689999999999888888 799999999984
No 79
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=89.12 E-value=1.9 Score=46.04 Aligned_cols=63 Identities=14% Similarity=0.204 Sum_probs=43.9
Q ss_pred CCCHHHHHHhHHHHHhcCC--CEEEECCCCCCCCCCCCCcccC-CccCC-CCCCHHHHHHHHHHHHHcCCEEEeee
Q 004353 523 GRWYMELKEKATELSSLGF--SVIWLPPPTESVSPEGYMPRDL-YNLSS-RYGNIDELKDVVNKFHDVGMKILGDV 594 (759)
Q Consensus 523 Gg~l~GI~ekLdYLk~LGv--taIwL~PIf~s~s~hGYdp~Dy-~~Idp-~~GT~edfk~LV~aaH~~GIkVIlDv 594 (759)
-.+-+.+.+.++.+++.|| ++|+|-.-+... | .++ +..|+ +|. +.++||+.+|++|++|++-+
T Consensus 20 ~~~~~~v~~~~~~~~~~~iP~d~~~lD~~~~~~----~--~~f~~~~d~~~Fp---dp~~~i~~l~~~g~~~~~~~ 86 (265)
T cd06589 20 YGDQDKVLEVIDGMRENDIPLDGFVLDDDYTDG----Y--GDFTFDWDAGKFP---NPKSMIDELHDNGVKLVLWI 86 (265)
T ss_pred CCCHHHHHHHHHHHHHcCCCccEEEECcccccC----C--ceeeeecChhhCC---CHHHHHHHHHHCCCEEEEEe
Confidence 3567889999998988665 799987644322 1 111 24443 454 46889999999999999943
No 80
>PRK10658 putative alpha-glucosidase; Provisional
Probab=87.44 E-value=1.2 Score=53.94 Aligned_cols=130 Identities=12% Similarity=0.105 Sum_probs=74.4
Q ss_pred HHHHHHhHHHHHhcCC--CEEEECCCCCCCCCCCCCcccCCccCC-CCCCHHHHHHHHHHHHHcCCEEEeeeeecccccc
Q 004353 526 YMELKEKATELSSLGF--SVIWLPPPTESVSPEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAH 602 (759)
Q Consensus 526 l~GI~ekLdYLk~LGv--taIwL~PIf~s~s~hGYdp~Dy~~Idp-~~GT~edfk~LV~aaH~~GIkVIlDvV~NH~~~~ 602 (759)
-+.+.+-++.+++.|| ++|+|-..+- .+|.-.| +..|+ +|- +.+.||+++|++|+||++=+.+ +++.+
T Consensus 282 e~~v~~~~~~~r~~~iP~d~i~lD~~w~----~~~~~~~-f~wd~~~FP---dp~~mi~~L~~~G~k~~~~i~P-~i~~~ 352 (665)
T PRK10658 282 EATVNSFIDGMAERDLPLHVFHFDCFWM----KEFQWCD-FEWDPRTFP---DPEGMLKRLKAKGLKICVWINP-YIAQK 352 (665)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEchhhh----cCCceee-eEEChhhCC---CHHHHHHHHHHCCCEEEEeccC-CcCCC
Confidence 4567777888888776 6777764321 1221122 23332 343 4678999999999999986554 23321
Q ss_pred ---cccc-CCCccccCCCCCCCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCccEEEE
Q 004353 603 ---YQNQ-NGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRL 678 (759)
Q Consensus 603 ---~~~~-~~~w~~~~~~~~w~~~~~~~~~~~f~~~g~~~~~~~~~~lpdLn~~np~Vr~~i~d~l~~Wi~e~GVDGFRl 678 (759)
|... ...+.... .+...+.. ..|.+ ...-+|+.||++|+...+.++.++ +.|||||-.
T Consensus 353 s~~f~e~~~~gy~vk~-----------~~G~~~~~----~~W~g--~~~~~Dftnp~ar~W~~~~~~~l~-d~Gvdgfw~ 414 (665)
T PRK10658 353 SPLFKEGKEKGYLLKR-----------PDGSVWQW----DKWQP--GMAIVDFTNPDACKWYADKLKGLL-DMGVDCFKT 414 (665)
T ss_pred chHHHHHHHCCeEEEC-----------CCCCEeee----eecCC--CceeecCCCHHHHHHHHHHHHHHH-hcCCcEEEe
Confidence 1110 00010000 00000000 01111 123467789999999999998888 799999999
Q ss_pred eccC
Q 004353 679 DFVR 682 (759)
Q Consensus 679 D~ak 682 (759)
|...
T Consensus 415 D~gE 418 (665)
T PRK10658 415 DFGE 418 (665)
T ss_pred cCCc
Confidence 9653
No 81
>PLN02635 disproportionating enzyme
Probab=86.64 E-value=2.4 Score=50.06 Aligned_cols=123 Identities=17% Similarity=0.150 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHcCCEEEeeeee--cccccc-ccccCCCccccCCCCCC-CCCcccCCCCCCCCCCCccCCCCCCCCCCC
Q 004353 574 DELKDVVNKFHDVGMKILGDVVL--NHRCAH-YQNQNGVWNIFGGRLNW-DDRAVVADDPHFQGRGNKSSGDNFHAAPNI 649 (759)
Q Consensus 574 edfk~LV~aaH~~GIkVIlDvV~--NH~~~~-~~~~~~~w~~~~~~~~w-~~~~~~~~~~~f~~~g~~~~~~~~~~lpdL 649 (759)
.++++|-+.||++||++|.|+-+ +|-|.+ |.++ ..+..+..... ..-..| ..+|...|.. .++|-+
T Consensus 224 ~Qw~~l~~yA~~~Gi~L~gDlpi~Va~dSaDvWa~~--~lF~ld~~g~p~~~aGaP--PD~Fs~~GQ~------WG~P~y 293 (538)
T PLN02635 224 RQWQAVRSYANEKGISIIGDMPIYVGGHSADVWANR--KLFLLNKTGFPLLVSGVP--PDAFSETGQL------WGSPLY 293 (538)
T ss_pred HHHHHHHHHHHHCCCEEEEEeecccCCCcHHHhcCH--HhhcCCCCCCcceeeeCC--CCcCCccccc------CCCcCc
Confidence 47889999999999999999994 555544 2211 11111100000 000011 1134333332 234444
Q ss_pred CCCCH--HHHHHHHHHHHHHHHcCCccEEEEeccCcc----------------------cHHHHHHHHHhCCCcEEEEee
Q 004353 650 DHSQD--FVRKDIKEWLCWLRNEIGYDGWRLDFVRGF----------------------WGGYVKDYLEATEPYFAVGEY 705 (759)
Q Consensus 650 n~~np--~Vr~~i~d~l~~Wi~e~GVDGFRlD~ak~f----------------------~~~~~~~~~~~~p~~~lvGE~ 705 (759)
|...= .--+..++-+++.++ .+|+.|||++.+| ..+++..+.+..+.+.+|||-
T Consensus 294 ~w~~l~~~gy~ww~~Rlr~~~~--~~d~lRIDHf~Gf~r~W~IP~g~~ta~~G~wv~~Pg~~l~~~l~~~~~~~~vIaED 371 (538)
T PLN02635 294 DWKAMAKDGYSWWAGRMRRALE--LYDEFRIDHFRGFAGYWAVPADAKTAMNGRWKVGPGKSFFDAIKKAVGKIDIIAED 371 (538)
T ss_pred CHHHHHhcCcHHHHHHHHHHHH--hCCeEEecchhhhheeeeccCCCCCCCCCeeeeCCHHHHHHHHHHHcCCCCEEEee
Confidence 42110 001123444555553 5788999998643 224555666666788999997
Q ss_pred cCC
Q 004353 706 WDS 708 (759)
Q Consensus 706 w~~ 708 (759)
-..
T Consensus 372 LG~ 374 (538)
T PLN02635 372 LGV 374 (538)
T ss_pred CCC
Confidence 653
No 82
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=86.52 E-value=1.4 Score=54.15 Aligned_cols=87 Identities=16% Similarity=0.230 Sum_probs=51.9
Q ss_pred HHHHHHHHHHcCCEEEeeeeecccccc--ccc--cCCCccccCCCCCCCCCcccCCCCCCCCCCCccCCCCCC-CCCCCC
Q 004353 576 LKDVVNKFHDVGMKILGDVVLNHRCAH--YQN--QNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFH-AAPNID 650 (759)
Q Consensus 576 fk~LV~aaH~~GIkVIlDvV~NH~~~~--~~~--~~~~w~~~~~~~~w~~~~~~~~~~~f~~~g~~~~~~~~~-~lpdLn 650 (759)
.++|++.+|++|||+|+=+.+.=.... |+. ++|.+ .. ...|..+.+..+. ...-+|
T Consensus 323 pk~mi~~l~~~Gikl~~~i~P~i~~d~~~~~e~~~~Gy~-~k------------------~~~g~~~~~~~w~~~~a~~D 383 (772)
T COG1501 323 PKQMIAELHEKGIKLIVIINPYIKQDSPLFKEAIEKGYF-VK------------------DPDGEIYQADFWPGNSAFPD 383 (772)
T ss_pred HHHHHHHHHhcCceEEEEeccccccCCchHHHHHHCCeE-EE------------------CCCCCEeeecccCCcccccC
Confidence 349999999999999986654332221 110 11110 00 0011111111221 234466
Q ss_pred CCCHHHHHHHHH-HHHHHHHcCCccEEEEeccC
Q 004353 651 HSQDFVRKDIKE-WLCWLRNEIGYDGWRLDFVR 682 (759)
Q Consensus 651 ~~np~Vr~~i~d-~l~~Wi~e~GVDGFRlD~ak 682 (759)
+.||++|+...+ ....++ ++|||||=.|+..
T Consensus 384 Ftnp~~r~Ww~~~~~~~l~-d~Gv~g~W~D~nE 415 (772)
T COG1501 384 FTNPDAREWWASDKKKNLL-DLGVDGFWNDMNE 415 (772)
T ss_pred CCCHHHHHHHHHHHHhHHH-hcCccEEEccCCC
Confidence 789999999994 556677 9999999999964
No 83
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=85.42 E-value=1.8 Score=52.92 Aligned_cols=59 Identities=14% Similarity=0.162 Sum_probs=48.1
Q ss_pred CCHHHHHHHHHHHHHHHHcCCccEEEEeccC----cccHHHHHHHHHhCCCcEEEEeecCCCCcc
Q 004353 652 SQDFVRKDIKEWLCWLRNEIGYDGWRLDFVR----GFWGGYVKDYLEATEPYFAVGEYWDSLSYT 712 (759)
Q Consensus 652 ~np~Vr~~i~d~l~~Wi~e~GVDGFRlD~ak----~f~~~~~~~~~~~~p~~~lvGE~w~~~~y~ 712 (759)
++|.++++|.+++..-.+ =+||+|+|.++ |.-..+++..++..|+.|+|+|.+.+..++
T Consensus 509 DsPyLWq~M~kY~e~tAr--iFdG~RlDNcHsTPlHVaEylLd~ARk~nPnlYVvAELFtgSe~~ 571 (1521)
T KOG3625|consen 509 DSPYLWQHMKKYTEITAR--IFDGVRLDNCHSTPLHVAEYLLDAARKLNPNLYVVAELFTGSEDL 571 (1521)
T ss_pred cChHHHHHHHHHHHHHHH--HhcceeeccCCCCchhHHHHHHHHHHhcCCCeEEEeeeccCCccc
Confidence 468999999998865542 48999999998 666677777777889999999999886554
No 84
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=85.41 E-value=5.7 Score=42.99 Aligned_cols=64 Identities=13% Similarity=0.013 Sum_probs=42.3
Q ss_pred CCCCHHHHHHhHHHHHhcCCCEEEECCCCCCCCCCCC-CcccCCccCCCCCCHHHHHHHHHHHHHcCCEEEe
Q 004353 522 SGRWYMELKEKATELSSLGFSVIWLPPPTESVSPEGY-MPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILG 592 (759)
Q Consensus 522 ~Gg~l~GI~ekLdYLk~LGvtaIwL~PIf~s~s~hGY-dp~Dy~~Idp~~GT~edfk~LV~aaH~~GIkVIl 592 (759)
.|.+.+....-+|+-+++|+..|.+-=-+.. +++ ...|+....+. .++++||+=|+++|++|+|
T Consensus 27 ~g~~t~~~k~yIDfAa~~G~eYvlvD~GW~~---~~~~~~~d~~~~~~~----~dl~elv~Ya~~KgVgi~l 91 (273)
T PF10566_consen 27 HGATTETQKRYIDFAAEMGIEYVLVDAGWYG---WEKDDDFDFTKPIPD----FDLPELVDYAKEKGVGIWL 91 (273)
T ss_dssp BSSSHHHHHHHHHHHHHTT-SEEEEBTTCCG---S--TTT--TT-B-TT------HHHHHHHHHHTT-EEEE
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEecccccc---ccccccccccccCCc----cCHHHHHHHHHHcCCCEEE
Confidence 3678999999999999999999999322211 111 23445555544 7899999999999999998
No 85
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=84.43 E-value=7.2 Score=43.36 Aligned_cols=108 Identities=17% Similarity=0.224 Sum_probs=71.9
Q ss_pred CHHHHHHhHHHHHhcCC--CEEEECCCCCCCCCCCCCcccCCccCC-CCCCHHHHHHHHHHHHHcCCEEEeeeeeccccc
Q 004353 525 WYMELKEKATELSSLGF--SVIWLPPPTESVSPEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 601 (759)
Q Consensus 525 ~l~GI~ekLdYLk~LGv--taIwL~PIf~s~s~hGYdp~Dy~~Idp-~~GT~edfk~LV~aaH~~GIkVIlDvV~NH~~~ 601 (759)
+-..+.+.++.+++.+| ++|||-.=+. .+|. .+..|+ +|-. .++|++++|++|+++|+-+.+- +.
T Consensus 22 ~~~ev~~v~~~~r~~~IP~D~i~lDidy~----~~~~---~Ft~d~~~FPd---p~~mv~~L~~~G~klv~~i~P~-i~- 89 (332)
T cd06601 22 NRSDLEEVVEGYRDNNIPLDGLHVDVDFQ----DNYR---TFTTNGGGFPN---PKEMFDNLHNKGLKCSTNITPV-IS- 89 (332)
T ss_pred CHHHHHHHHHHHHHcCCCCceEEEcCchh----cCCC---ceeecCCCCCC---HHHHHHHHHHCCCeEEEEecCc-ee-
Confidence 56778888888888776 8899875222 2232 244453 5644 4789999999999998865422 11
Q ss_pred cccccCCCccccCCCCCCCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCccEEEEecc
Q 004353 602 HYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFV 681 (759)
Q Consensus 602 ~~~~~~~~w~~~~~~~~w~~~~~~~~~~~f~~~g~~~~~~~~~~lpdLn~~np~Vr~~i~d~l~~Wi~e~GVDGFRlD~a 681 (759)
.+. .|. +-...| |+.||++|++..+..+.+. +.|||||=+|+.
T Consensus 90 -----------~g~--~~~---------------------~~~~~p--Dftnp~ar~wW~~~~~~l~-~~Gv~~~W~Dmn 132 (332)
T cd06601 90 -----------YGG--GLG---------------------SPGLYP--DLGRPDVREWWGNQYKYLF-DIGLEFVWQDMT 132 (332)
T ss_pred -----------cCc--cCC---------------------CCceee--CCCCHHHHHHHHHHHHHHH-hCCCceeecCCC
Confidence 000 010 001234 4579999999888888877 789999999974
No 86
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=83.38 E-value=2.2 Score=47.73 Aligned_cols=29 Identities=21% Similarity=0.102 Sum_probs=25.8
Q ss_pred CCHHHHHHHHHHHHHHHHcCCccEEEEec
Q 004353 652 SQDFVRKDIKEWLCWLRNEIGYDGWRLDF 680 (759)
Q Consensus 652 ~np~Vr~~i~d~l~~Wi~e~GVDGFRlD~ 680 (759)
.++..|+.+++.+..+++++|+||+-||-
T Consensus 92 ~~~~~R~~fi~siv~~~~~~gfDGIdIDw 120 (358)
T cd02875 92 SNPTYRTQWIQQKVELAKSQFMDGINIDI 120 (358)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCeEEEcc
Confidence 47889999999888888899999999996
No 87
>PRK14508 4-alpha-glucanotransferase; Provisional
Probab=83.01 E-value=9.6 Score=44.74 Aligned_cols=123 Identities=19% Similarity=0.125 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHcCCEEEeeeeec--ccccc-ccccCCCccccCCCCCCCCCcccCC-CCCCCCCCCccCCCCCCCCCCC
Q 004353 574 DELKDVVNKFHDVGMKILGDVVLN--HRCAH-YQNQNGVWNIFGGRLNWDDRAVVAD-DPHFQGRGNKSSGDNFHAAPNI 649 (759)
Q Consensus 574 edfk~LV~aaH~~GIkVIlDvV~N--H~~~~-~~~~~~~w~~~~~~~~w~~~~~~~~-~~~f~~~g~~~~~~~~~~lpdL 649 (759)
.+++++.+.||++||++|.|+-+- +-|.+ |.++ ..+..+.. -....+... ...|...|.. .++|-+
T Consensus 198 ~Q~~~~~~yA~~~Gi~L~gDLpigV~~dsaDvWa~~--~lF~l~~~--~~p~~vaGaPPD~Fs~~GQ~------WG~P~y 267 (497)
T PRK14508 198 RQWKALKAYANDKGIEIIGDLPIYVAYDSADVWANP--ELFKLDED--GKPTVVAGVPPDYFSETGQL------WGNPVY 267 (497)
T ss_pred HHHHHHHHHHHHCCCEEEEeeecccCCCCHHHHcCh--hhhcCCCC--CCcceeeeCCCCCCCcccCc------CCCCCc
Confidence 478899999999999999999873 33332 2211 11111100 000000001 1123333332 234555
Q ss_pred CCCCH--HHHHHHHHHHHHHHHcCCccEEEEeccCcc----------------------cHHHHHHHHHhCCCcEEEEee
Q 004353 650 DHSQD--FVRKDIKEWLCWLRNEIGYDGWRLDFVRGF----------------------WGGYVKDYLEATEPYFAVGEY 705 (759)
Q Consensus 650 n~~np--~Vr~~i~d~l~~Wi~e~GVDGFRlD~ak~f----------------------~~~~~~~~~~~~p~~~lvGE~ 705 (759)
|...= .=-+.+++-+++.++ -+|++|||++.+| ..++++.+..+.+++.+|||-
T Consensus 268 ~w~~l~~~gy~ww~~rlr~~~~--~~~~lRIDH~~Gf~r~W~IP~~~~~a~~G~~v~~p~~~l~~~l~~e~~~~~vigED 345 (497)
T PRK14508 268 NWDALRKDGYRWWIERLRRSFK--LYDIVRIDHFRGFEAYWEIPAGEKTAINGRWVPGPGKDLFEAVKEELGDLPIIAED 345 (497)
T ss_pred CHHHHHhcCcHHHHHHHHHHHH--hCCeEEecchhhhceeeeecCCCCCCCCCeeecCCHHHHHHHHHHHhCCCCEEEeE
Confidence 43110 001124455555553 5788999998532 224556666666779999997
Q ss_pred cCC
Q 004353 706 WDS 708 (759)
Q Consensus 706 w~~ 708 (759)
-..
T Consensus 346 LG~ 348 (497)
T PRK14508 346 LGV 348 (497)
T ss_pred CCC
Confidence 654
No 88
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=82.08 E-value=3.2 Score=46.52 Aligned_cols=121 Identities=15% Similarity=0.194 Sum_probs=68.7
Q ss_pred HHHHHhHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCC--HHHHHHHHHHHHHcCCEEEeeeeecccccccc
Q 004353 527 MELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGN--IDELKDVVNKFHDVGMKILGDVVLNHRCAHYQ 604 (759)
Q Consensus 527 ~GI~ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Idp~~GT--~edfk~LV~aaH~~GIkVIlDvV~NH~~~~~~ 604 (759)
..+.+.+.-++++|||+|-|..+.- ..+.|.=|. -+.|..+|+.|+++||+|||-+. .+....|.
T Consensus 10 e~~~~d~~~m~~~G~n~vri~~~~W------------~~lEP~eG~ydF~~lD~~l~~a~~~Gi~viL~~~-~~~~P~Wl 76 (374)
T PF02449_consen 10 EEWEEDLRLMKEAGFNTVRIGEFSW------------SWLEPEEGQYDFSWLDRVLDLAAKHGIKVILGTP-TAAPPAWL 76 (374)
T ss_dssp CHHHHHHHHHHHHT-SEEEE-CCEH------------HHH-SBTTB---HHHHHHHHHHHCTT-EEEEEEC-TTTS-HHH
T ss_pred HHHHHHHHHHHHcCCCEEEEEEech------------hhccCCCCeeecHHHHHHHHHHHhccCeEEEEec-ccccccch
Confidence 4678889999999999999987642 122222221 34589999999999999999664 33322211
Q ss_pred -ccCCCccccCCCCCCCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCC----ccEEEEe
Q 004353 605 -NQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIG----YDGWRLD 679 (759)
Q Consensus 605 -~~~~~w~~~~~~~~w~~~~~~~~~~~f~~~g~~~~~~~~~~lpdLn~~np~Vr~~i~d~l~~Wi~e~G----VDGFRlD 679 (759)
..+++.- .....+... ....-...+..+|.+|+++.+.++.+++.|+ |-||-+|
T Consensus 77 ~~~~Pe~~------------------~~~~~g~~~---~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~ 135 (374)
T PF02449_consen 77 YDKYPEIL------------------PVDADGRRR---GFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQID 135 (374)
T ss_dssp HCCSGCCC-------------------B-TTTSBE---ECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEC
T ss_pred hhhccccc------------------ccCCCCCcC---ccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEec
Confidence 1111000 000001100 1112234566789999998888777665544 7799988
Q ss_pred cc
Q 004353 680 FV 681 (759)
Q Consensus 680 ~a 681 (759)
.=
T Consensus 136 NE 137 (374)
T PF02449_consen 136 NE 137 (374)
T ss_dssp CS
T ss_pred cc
Confidence 74
No 89
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=81.87 E-value=5.5 Score=44.17 Aligned_cols=129 Identities=16% Similarity=0.174 Sum_probs=76.8
Q ss_pred CHHHHHHhHHHHHhcCC--CEEEECCCCCCCCCCCCCcccCCccCC-CCCCHHHHHHHHHHHHHcCCEEEeeeeeccccc
Q 004353 525 WYMELKEKATELSSLGF--SVIWLPPPTESVSPEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 601 (759)
Q Consensus 525 ~l~GI~ekLdYLk~LGv--taIwL~PIf~s~s~hGYdp~Dy~~Idp-~~GT~edfk~LV~aaH~~GIkVIlDvV~NH~~~ 601 (759)
+-+.+.+.++.+++.|| ++|||-.-+. .+|. .+..|+ +|- +.+.||+++|++|+||++-+.+--...
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~lD~~~~----~~~~---~f~~d~~~FP---dp~~mi~~L~~~G~k~~~~~~P~v~~~ 91 (339)
T cd06603 22 DQEDVKEVDAGFDEHDIPYDVIWLDIEHT----DGKR---YFTWDKKKFP---DPEKMQEKLASKGRKLVTIVDPHIKRD 91 (339)
T ss_pred CHHHHHHHHHHHHHcCCCceEEEEChHHh----CCCC---ceEeCcccCC---CHHHHHHHHHHCCCEEEEEecCceecC
Confidence 57788899999988776 8888864221 1222 244554 454 568899999999999999875432211
Q ss_pred c----ccc--cCCCccccCCCCCCCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH--cCCc
Q 004353 602 H----YQN--QNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRN--EIGY 673 (759)
Q Consensus 602 ~----~~~--~~~~w~~~~~~~~w~~~~~~~~~~~f~~~g~~~~~~~~~~lpdLn~~np~Vr~~i~d~l~~Wi~--e~GV 673 (759)
. |.. +++ +.... .+...|.. ..|.+.. .-+|+.||++++...+.++..+. ..|+
T Consensus 92 ~~~~~y~e~~~~g-~~vk~-----------~~g~~~~~----~~w~g~~--~~~Dftnp~a~~ww~~~~~~~~~~~~~g~ 153 (339)
T cd06603 92 DGYYVYKEAKDKG-YLVKN-----------SDGGDFEG----WCWPGSS--SWPDFLNPEVRDWWASLFSYDKYKGSTEN 153 (339)
T ss_pred CCCHHHHHHHHCC-eEEEC-----------CCCCEEEE----EECCCCc--CCccCCChhHHHHHHHHHHHHhhcccCCC
Confidence 0 111 001 00000 00000100 0111112 23677899999999999888874 3689
Q ss_pred cEEEEecc
Q 004353 674 DGWRLDFV 681 (759)
Q Consensus 674 DGFRlD~a 681 (759)
|||=+|+.
T Consensus 154 ~g~w~D~~ 161 (339)
T cd06603 154 LYIWNDMN 161 (339)
T ss_pred ceEEeccC
Confidence 99988874
No 90
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=81.38 E-value=5.3 Score=43.51 Aligned_cols=58 Identities=21% Similarity=0.284 Sum_probs=36.8
Q ss_pred HHHhHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHH---HHHHHHHHHcCCEEEeeee
Q 004353 529 LKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDEL---KDVVNKFHDVGMKILGDVV 595 (759)
Q Consensus 529 I~ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Idp~~GT~edf---k~LV~aaH~~GIkVIlDvV 595 (759)
-.+.|.-||.-||+.|-|--..+ .|+. +=++..|+..|+ -++.++|.+.||||++|+-
T Consensus 65 ~qD~~~iLK~~GvNyvRlRvwnd-----P~ds----ngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFH 125 (403)
T COG3867 65 RQDALQILKNHGVNYVRLRVWND-----PYDS----NGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFH 125 (403)
T ss_pred HHHHHHHHHHcCcCeEEEEEecC-----CccC----CCCccCCCcchHHHHHHHHHHHHhcCcEEEeecc
Confidence 45678899999999987642221 1111 112223444444 4566788889999999983
No 91
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=76.44 E-value=16 Score=44.78 Aligned_cols=135 Identities=19% Similarity=0.203 Sum_probs=76.1
Q ss_pred CCHHHHHHhHHHHHhcCCC--EEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCEEEeeeeec-ccc
Q 004353 524 RWYMELKEKATELSSLGFS--VIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLN-HRC 600 (759)
Q Consensus 524 g~l~GI~ekLdYLk~LGvt--aIwL~PIf~s~s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIkVIlDvV~N-H~~ 600 (759)
+++..+++..++.+++||. .+|.-= ....+| .||..=.-.|++ ++++++.+|++|+|+|+=+-++ ++.
T Consensus 308 ~nls~~~dvv~~~~~agiPld~~~~Di----DyMd~y--kDFTvd~~~fp~---~~~fv~~Lh~~G~kyvliidP~is~~ 378 (805)
T KOG1065|consen 308 KNLSVVRDVVENYRAAGIPLDVIVIDI----DYMDGY--KDFTVDKVWFPD---LKDFVDDLHARGFKYVLIIDPFISTN 378 (805)
T ss_pred ccHHHHHHHHHHHHHcCCCcceeeeeh----hhhhcc--cceeeccccCcc---hHHHHHHHHhCCCeEEEEeCCccccC
Confidence 5789999999999999985 666321 111233 354433445776 9999999999999988744322 111
Q ss_pred ccccccCCCccccCCCCCCCCCcccCCCCCCCCCC--CccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCccEEEE
Q 004353 601 AHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRG--NKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRL 678 (759)
Q Consensus 601 ~~~~~~~~~w~~~~~~~~w~~~~~~~~~~~f~~~g--~~~~~~~~~~lpdLn~~np~Vr~~i~d~l~~Wi~e~GVDGFRl 678 (759)
..| +.|..-.....|-. ...+.. -...|.+....| |+.||.+.....+.++..-+++++|||=+
T Consensus 379 ~~y----~~y~~g~~~~v~I~--------~~~g~~~~lg~vwP~~~~fp--Dftnp~~~~Ww~~~~~~fh~~vp~dg~wi 444 (805)
T KOG1065|consen 379 SSY----GPYDRGVAKDVLIK--------NREGSPKMLGEVWPGSTAFP--DFTNPAVVEWWLDELKRFHDEVPFDGFWI 444 (805)
T ss_pred ccc----hhhhhhhhhceeee--------cccCchhhhcccCCCccccc--ccCCchHHHHHHHHHHhhcccCCccceEE
Confidence 110 11100000000000 000000 011122233344 45788888887777766666889999999
Q ss_pred ecc
Q 004353 679 DFV 681 (759)
Q Consensus 679 D~a 681 (759)
|+-
T Consensus 445 Dmn 447 (805)
T KOG1065|consen 445 DMN 447 (805)
T ss_pred ECC
Confidence 994
No 92
>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.
Probab=75.96 E-value=4.4 Score=36.16 Aligned_cols=35 Identities=17% Similarity=0.277 Sum_probs=24.1
Q ss_pred eEEEecCccceeEEEEEeCCCcccccCCcceEEeC
Q 004353 363 RLFTVDEEFAGFLFVLKLNENTWLKCMENDFYIPL 397 (759)
Q Consensus 363 ~~~~L~~~~~g~~FVL~~~~~~W~k~~g~dfyi~l 397 (759)
..|++...=..|-||++..+++|=+|+|.||.++.
T Consensus 52 ~tv~vP~~a~~~dfvF~dg~~~wDNN~g~nY~~~V 86 (87)
T PF03423_consen 52 ATVDVPEDAYVMDFVFNDGAGNWDNNNGANYHFPV 86 (87)
T ss_dssp EEEE--TTTSEEEEEEE-SSS-EESTTTS-EEEES
T ss_pred EEEEEcCCceEEEEEEcCCCCcEeCCCCccEEEEc
Confidence 34777444457999999557899999999999975
No 93
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=73.84 E-value=28 Score=38.86 Aligned_cols=75 Identities=13% Similarity=0.152 Sum_probs=51.0
Q ss_pred CHHHHHHhHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccCC-------CCCCHHHHHHHHHHHHHcCCEEEeee-ee
Q 004353 525 WYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSS-------RYGNIDELKDVVNKFHDVGMKILGDV-VL 596 (759)
Q Consensus 525 ~l~GI~ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Idp-------~~GT~edfk~LV~aaH~~GIkVIlDv-V~ 596 (759)
..+.|.+-++.++.+++|.++|- +.+. ..+++....|=.+.. .|=|.+|+++||+-|.++||.||-.+ ++
T Consensus 16 ~~~~ik~~Id~ma~~KlN~lh~H-ltDd-~~~rle~~~~P~Lt~~ga~~~~~~YT~~di~eiv~yA~~rgI~vIPEID~P 93 (348)
T cd06562 16 SVDSIKRTIDAMAYNKLNVLHWH-ITDS-QSFPLESPSYPELSKKGAYSPSEVYTPEDVKEIVEYARLRGIRVIPEIDTP 93 (348)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEe-EEcC-CCceEeeCCCchhhhccCcCCCceECHHHHHHHHHHHHHcCCEEEEeccCc
Confidence 37889999999999999999873 0010 112222222222211 11289999999999999999999988 57
Q ss_pred ccccc
Q 004353 597 NHRCA 601 (759)
Q Consensus 597 NH~~~ 601 (759)
.|+..
T Consensus 94 GH~~a 98 (348)
T cd06562 94 GHTGS 98 (348)
T ss_pred hhhHH
Confidence 78764
No 94
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=73.66 E-value=5.3 Score=45.73 Aligned_cols=45 Identities=16% Similarity=0.234 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHHHHHHHHcCCccEEEEeccC----cccHHHHHHHHHhCCC
Q 004353 652 SQDFVRKDIKEWLCWLRNEIGYDGWRLDFVR----GFWGGYVKDYLEATEP 698 (759)
Q Consensus 652 ~np~Vr~~i~d~l~~Wi~e~GVDGFRlD~ak----~f~~~~~~~~~~~~p~ 698 (759)
++|.++++|.++.+...+ =++|||+|.++ |+...++.+-++..|+
T Consensus 374 DsP~LW~~M~~Yt~~~A~--iF~G~RiDNCHSTPlhVaeylLd~AR~v~Pn 422 (423)
T PF14701_consen 374 DSPFLWKHMKEYTELMAK--IFHGFRIDNCHSTPLHVAEYLLDAARKVNPN 422 (423)
T ss_pred CCHHHHHHHHHHHHHHHH--hcCeeeeecCCCCcHHHHHHHHHHHHhhCCC
Confidence 589999999999988874 58999999998 5566666666666665
No 95
>PF14883 GHL13: Hypothetical glycosyl hydrolase family 13
Probab=73.62 E-value=47 Score=36.31 Aligned_cols=124 Identities=13% Similarity=0.121 Sum_probs=74.4
Q ss_pred HHHHHhHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHH-HHHHHHHHH-HcCCEEEeeeeecccccccc
Q 004353 527 MELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDE-LKDVVNKFH-DVGMKILGDVVLNHRCAHYQ 604 (759)
Q Consensus 527 ~GI~ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Idp~~GT~ed-fk~LV~aaH-~~GIkVIlDvV~NH~~~~~~ 604 (759)
+.+-.-++.|++||+++|||.++.+..++.-.+. -|=++.++--..| |-..+=+++ +.|++|+.=+.. .+-+..
T Consensus 17 ~nl~~l~~ri~~~~~~tV~Lqaf~d~~gdg~~~~--~YFpnr~lpvraDlf~rvawql~tr~~v~VyAWMPv--laf~lp 92 (294)
T PF14883_consen 17 RNLDKLIQRIKDMGINTVYLQAFADPDGDGNADA--VYFPNRHLPVRADLFNRVAWQLRTRAGVKVYAWMPV--LAFDLP 92 (294)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeeeCCCCCCceee--EEcCCCCCchHHHHHHHHHHHHhhhhCCEEEEeeeh--hhccCC
Confidence 3556667899999999999999887554433333 3445556655666 445552554 789999875443 111110
Q ss_pred ccCCCccccCCCCCCCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCccEEEE
Q 004353 605 NQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRL 678 (759)
Q Consensus 605 ~~~~~w~~~~~~~~w~~~~~~~~~~~f~~~g~~~~~~~~~~lpdLn~~np~Vr~~i~d~l~~Wi~e~GVDGFRl 678 (759)
+ ...+.... .. . ..-....-|.--+|++|+.|.++...+.....+||+-|
T Consensus 93 ~----------~~~~~~~~-------~~-~------~~~~~y~RLSPf~p~~r~~I~~IYeDLA~y~~fdGILF 142 (294)
T PF14883_consen 93 K----------VKRADEVR-------TD-R------PDPDGYRRLSPFDPEARQIIKEIYEDLARYSKFDGILF 142 (294)
T ss_pred C----------cchhhhcc-------cc-C------CCCCCceecCCCCHHHHHHHHHHHHHHHhhCCCCeEEE
Confidence 0 00000000 00 0 00112234555689999999999999985559999998
No 96
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=73.37 E-value=5.4 Score=43.86 Aligned_cols=54 Identities=19% Similarity=0.342 Sum_probs=33.9
Q ss_pred HHHHHhHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCEEEeeeeeccccc
Q 004353 527 MELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 601 (759)
Q Consensus 527 ~GI~ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIkVIlDvV~NH~~~ 601 (759)
..-..-+++||+||+|+|-+ |.|||..-- .+..+++.+.||.||+|+---+.+.
T Consensus 53 ~~C~rDi~~l~~LgiNtIRV-----------------Y~vdp~~nH----d~CM~~~~~aGIYvi~Dl~~p~~sI 106 (314)
T PF03198_consen 53 EACKRDIPLLKELGINTIRV-----------------YSVDPSKNH----DECMSAFADAGIYVILDLNTPNGSI 106 (314)
T ss_dssp HHHHHHHHHHHHHT-SEEEE-----------------S---TTS------HHHHHHHHHTT-EEEEES-BTTBS-
T ss_pred HHHHHhHHHHHHcCCCEEEE-----------------EEeCCCCCH----HHHHHHHHhCCCEEEEecCCCCccc
Confidence 45556678999999999984 677776633 3344556678999999998776654
No 97
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=72.37 E-value=21 Score=39.84 Aligned_cols=144 Identities=11% Similarity=-0.008 Sum_probs=76.9
Q ss_pred HHHHhHHHHHhcCCCEEEECCCCCCCCC---CCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCEEEeeeeecccccccc
Q 004353 528 ELKEKATELSSLGFSVIWLPPPTESVSP---EGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQ 604 (759)
Q Consensus 528 GI~ekLdYLk~LGvtaIwL~PIf~s~s~---hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIkVIlDvV~NH~~~~~~ 604 (759)
...+-++-++++|...|-|+--. +.+ +.=...+|...+.. +..+=+++|+++|+++|||+.+ +-|.. +
T Consensus 92 D~dqW~~~ak~aGakY~VlTakH--HDGF~LW~S~~t~~~v~~~~-~krDiv~El~~A~rk~Glk~G~---Y~S~~-d-- 162 (346)
T PF01120_consen 92 DADQWAKLAKDAGAKYVVLTAKH--HDGFCLWPSKYTDYNVVNSG-PKRDIVGELADACRKYGLKFGL---YYSPW-D-- 162 (346)
T ss_dssp -HHHHHHHHHHTT-SEEEEEEE---TT--BSS--TT-SSBGGGGG-GTS-HHHHHHHHHHHTT-EEEE---EEESS-S--
T ss_pred CHHHHHHHHHHcCCCEEEeehhh--cCccccCCCCCCcccccCCC-CCCCHHHHHHHHHHHcCCeEEE---Eecch-H--
Confidence 34556778899999999987433 221 22223344444422 2357799999999999999998 22222 1
Q ss_pred ccCCCccccCCCCCCCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCC-CHHHHHHHHHHHHHHHHcCCccEEEEeccCc
Q 004353 605 NQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHS-QDFVRKDIKEWLCWLRNEIGYDGWRLDFVRG 683 (759)
Q Consensus 605 ~~~~~w~~~~~~~~w~~~~~~~~~~~f~~~g~~~~~~~~~~lpdLn~~-np~Vr~~i~d~l~~Wi~e~GVDGFRlD~ak~ 683 (759)
|......... . ..... .++.... ...+.+++..-++.++..|.+|.+=+|..-.
T Consensus 163 --------------w~~~~~~~~~--~---~~~~~------~~~~~~~~~~~~~~~~~~ql~EL~~~Y~~d~lWfDg~~~ 217 (346)
T PF01120_consen 163 --------------WHHPDYPPDE--E---GDENG------PADGPGNWQRYYNEYWLAQLRELLTRYKPDILWFDGGWP 217 (346)
T ss_dssp --------------CCCTTTTSSC--H---CHHCC--------HCCHHHHHHHHHHHHHHHHHHHHCSTESEEEEESTTS
T ss_pred --------------hcCcccCCCc--c---CCccc------ccccchhhHhHhhhhhHHHHHHHHhCCCcceEEecCCCC
Confidence 1110000000 0 00000 0000000 1234446677788888899999999999742
Q ss_pred ------ccHHHHHHHHHhCCCcEEEEee
Q 004353 684 ------FWGGYVKDYLEATEPYFAVGEY 705 (759)
Q Consensus 684 ------f~~~~~~~~~~~~p~~~lvGE~ 705 (759)
-...+...+++..|++++..-.
T Consensus 218 ~~~~~~~~~~~~~~i~~~qp~~ii~~r~ 245 (346)
T PF01120_consen 218 DPDEDWDSAELYNWIRKLQPDVIINNRW 245 (346)
T ss_dssp CCCTHHHHHHHHHHHHHHSTTSEEECCC
T ss_pred ccccccCHHHHHHHHHHhCCeEEEeccc
Confidence 1255666667777777665543
No 98
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=72.17 E-value=10 Score=42.39 Aligned_cols=21 Identities=29% Similarity=0.585 Sum_probs=16.8
Q ss_pred HHHHHHHHHcCCEEEeeeeec
Q 004353 577 KDVVNKFHDVGMKILGDVVLN 597 (759)
Q Consensus 577 k~LV~aaH~~GIkVIlDvV~N 597 (759)
...+++||++|++|+-=+.+.
T Consensus 49 ~~~idaAHknGV~Vlgti~~e 69 (339)
T cd06547 49 ADWINAAHRNGVPVLGTFIFE 69 (339)
T ss_pred cHHHHHHHhcCCeEEEEEEec
Confidence 357889999999999866543
No 99
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=71.06 E-value=6.7 Score=44.71 Aligned_cols=59 Identities=20% Similarity=0.315 Sum_probs=41.5
Q ss_pred HHHHhHHHHHhcCCCEEEECCCCCCCCCCCCCcc-cCCccCCCCCCH---HHHHHHHHHHHHcCCEEEeee
Q 004353 528 ELKEKATELSSLGFSVIWLPPPTESVSPEGYMPR-DLYNLSSRYGNI---DELKDVVNKFHDVGMKILGDV 594 (759)
Q Consensus 528 GI~ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~-Dy~~Idp~~GT~---edfk~LV~aaH~~GIkVIlDv 594 (759)
-.++-+.++++.|+++|-++= ||+.. .....+|.+=.. .=+.+.|+.|.++||+|++|+
T Consensus 74 ~~~~~~~~ik~~G~n~VRiPi--------~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~ 136 (407)
T COG2730 74 ITEEDFDQIKSAGFNAVRIPI--------GYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDL 136 (407)
T ss_pred hhhhHHHHHHHcCCcEEEccc--------chhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEe
Confidence 357788999999999999863 33332 111145555422 246777999999999999996
No 100
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=68.83 E-value=15 Score=38.87 Aligned_cols=79 Identities=20% Similarity=0.198 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHcCCEEEeeeeeccccccccccCCCccccCCCCCCCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCC
Q 004353 573 IDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHS 652 (759)
Q Consensus 573 ~edfk~LV~aaH~~GIkVIlDvV~NH~~~~~~~~~~~w~~~~~~~~w~~~~~~~~~~~f~~~g~~~~~~~~~~lpdLn~~ 652 (759)
..++..+++++|++|+||++=+- ++... .| . . -..
T Consensus 45 ~~~~~~~~~~~~~~~~kvl~sig-g~~~~----------------------------~~------------~--~--~~~ 79 (253)
T cd06545 45 RSELNSVVNAAHAHNVKILISLA-GGSPP----------------------------EF------------T--A--ALN 79 (253)
T ss_pred HHHHHHHHHHHHhCCCEEEEEEc-CCCCC----------------------------cc------------h--h--hhc
Confidence 35789999999999999998431 11000 00 0 0 124
Q ss_pred CHHHHHHHHHHHHHHHHcCCccEEEEeccCc-----ccHHHHHHHHHhC
Q 004353 653 QDFVRKDIKEWLCWLRNEIGYDGWRLDFVRG-----FWGGYVKDYLEAT 696 (759)
Q Consensus 653 np~Vr~~i~d~l~~Wi~e~GVDGFRlD~ak~-----f~~~~~~~~~~~~ 696 (759)
++..|+.+++.+..+++++|+||+-||--.- -...|+++++++.
T Consensus 80 ~~~~r~~fi~~lv~~~~~~~~DGIdiDwE~~~~~~~~~~~fv~~Lr~~l 128 (253)
T cd06545 80 DPAKRKALVDKIINYVVSYNLDGIDVDLEGPDVTFGDYLVFIRALYAAL 128 (253)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCceeEEeeccCccHhHHHHHHHHHHHHH
Confidence 6888999998888888899999999997321 1234566666653
No 101
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=68.42 E-value=8.9 Score=35.92 Aligned_cols=44 Identities=23% Similarity=0.542 Sum_probs=33.0
Q ss_pred CHHHHHHhHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCEEEe
Q 004353 525 WYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILG 592 (759)
Q Consensus 525 ~l~GI~ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIkVIl 592 (759)
.-+.+.+-++.+.++|+.+||+.|= ..-+++++.|+++||+|+-
T Consensus 64 ~~~~~~~~v~~~~~~g~~~v~~~~g------------------------~~~~~~~~~a~~~gi~vig 107 (116)
T PF13380_consen 64 PPDKVPEIVDEAAALGVKAVWLQPG------------------------AESEELIEAAREAGIRVIG 107 (116)
T ss_dssp -HHHHHHHHHHHHHHT-SEEEE-TT------------------------S--HHHHHHHHHTT-EEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEcc------------------------hHHHHHHHHHHHcCCEEEe
Confidence 3568889999999999999999983 4457888899999999985
No 102
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=68.38 E-value=8 Score=43.46 Aligned_cols=59 Identities=17% Similarity=0.299 Sum_probs=40.5
Q ss_pred CHHHHHHhHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccCCCC-CCHHHHHHHHHHHHHcCCEEEeeeeecc
Q 004353 525 WYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRY-GNIDELKDVVNKFHDVGMKILGDVVLNH 598 (759)
Q Consensus 525 ~l~GI~ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Idp~~-GT~edfk~LV~aaH~~GIkVIlDvV~NH 598 (759)
.+....+-|.-.+++|++.|+.+=.. ++..- ...+.|++|++.||+.||+||+|+-+.-
T Consensus 12 ~~~~~~~yi~~a~~~Gf~~iFTSL~i---------------pe~~~~~~~~~~~~l~~~a~~~~~~v~~Disp~~ 71 (357)
T PF05913_consen 12 SFEENKAYIEKAAKYGFKRIFTSLHI---------------PEDDPEDYLERLKELLKLAKELGMEVIADISPKV 71 (357)
T ss_dssp -HHHHHHHHHHHHCTTEEEEEEEE------------------------HHHHHHHHHHHHHHCT-EEEEEE-CCH
T ss_pred CHHHHHHHHHHHHHCCCCEEECCCCc---------------CCCCHHHHHHHHHHHHHHHHHCCCEEEEECCHHH
Confidence 46777778888889999999976211 11111 1257899999999999999999996543
No 103
>TIGR00217 malQ 4-alpha-glucanotransferase. This enzyme is known as amylomaltase and disproportionating enzyme.
Probab=68.19 E-value=20 Score=42.37 Aligned_cols=123 Identities=15% Similarity=0.117 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHcCCEEEeeeeeccc--ccc-ccccCCCccccCCCCCCCCCcc-cCCCCCCCCCCCccCCCCCCCCCCC
Q 004353 574 DELKDVVNKFHDVGMKILGDVVLNHR--CAH-YQNQNGVWNIFGGRLNWDDRAV-VADDPHFQGRGNKSSGDNFHAAPNI 649 (759)
Q Consensus 574 edfk~LV~aaH~~GIkVIlDvV~NH~--~~~-~~~~~~~w~~~~~~~~w~~~~~-~~~~~~f~~~g~~~~~~~~~~lpdL 649 (759)
.+++++-+.|+.+||++|.|+-+-=. |.+ |.++ ..+..+.. -..+.+ .....+|...|.. .++|-+
T Consensus 212 ~Q~~~l~~yA~~~~I~L~gDlpi~v~~dsaDvWa~~--~~F~l~~~--~GaP~~agvpPd~Fs~~GQ~------WG~P~y 281 (513)
T TIGR00217 212 SQFQALKRYANDMGIGLYGDLPVFVAYDSADVWADP--ELFCLRAS--AGAPKPAGLGPDYFLEQGQN------WGLPPY 281 (513)
T ss_pred HHHHHHHHHHhcCCcEEEEeCcceeCCCcHHHHhCH--HHhCCCcc--cCCCCCCCCCCCcccccCCC------CCCCCc
Confidence 46888889999999999999987432 222 2111 11111100 000000 0011134433332 234555
Q ss_pred CCCCH--HHHHHHHHHHHHHHHcCCccEEEEeccCcc----------------------cHHHHHHHHHhCCC-cEEEEe
Q 004353 650 DHSQD--FVRKDIKEWLCWLRNEIGYDGWRLDFVRGF----------------------WGGYVKDYLEATEP-YFAVGE 704 (759)
Q Consensus 650 n~~np--~Vr~~i~d~l~~Wi~e~GVDGFRlD~ak~f----------------------~~~~~~~~~~~~p~-~~lvGE 704 (759)
|...= .=-...++-+++-++ .+|+.|||++.+| ..++++.+...... +.+|||
T Consensus 282 ~w~~l~~~gy~ww~~rlr~~~~--~~d~lRIDHf~Gf~r~w~IP~g~~ta~~G~wv~~Pg~~l~~~l~~e~~~~~~vIaE 359 (513)
T TIGR00217 282 DWNVLKARGYEWWIKRLGANMQ--YADILRIDHFRGFVSLWWVPAGESTAFNGAWVHYPGDDFFNILANESKDNLKIIGE 359 (513)
T ss_pred CHHHHHhcCcHHHHHHHHHHHH--hCCeEEecchhhhceeeeecCCCCCCCCCeeEeCCHHHHHHHHHHHcCCCCcEEee
Confidence 43110 001123444555553 5788999998643 22456666666666 889999
Q ss_pred ecCC
Q 004353 705 YWDS 708 (759)
Q Consensus 705 ~w~~ 708 (759)
--..
T Consensus 360 DLG~ 363 (513)
T TIGR00217 360 DLGT 363 (513)
T ss_pred eCCC
Confidence 7653
No 104
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=68.02 E-value=4.8 Score=44.44 Aligned_cols=61 Identities=11% Similarity=0.152 Sum_probs=37.5
Q ss_pred HHHHhHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCEEEeeeee
Q 004353 528 ELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVL 596 (759)
Q Consensus 528 GI~ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIkVIlDvV~ 596 (759)
-..+.|..+|++|+|+|-.-=.+..+.... ...|| ....||..+++.|+++||+||+-.=+
T Consensus 25 ~W~~~l~k~ka~G~n~v~~yv~W~~he~~~-g~~df-------~g~~dl~~f~~~a~~~gl~vilrpGp 85 (319)
T PF01301_consen 25 YWRDRLQKMKAAGLNTVSTYVPWNLHEPEE-GQFDF-------TGNRDLDRFLDLAQENGLYVILRPGP 85 (319)
T ss_dssp GHHHHHHHHHHTT-SEEEEE--HHHHSSBT-TB----------SGGG-HHHHHHHHHHTT-EEEEEEES
T ss_pred HHHHHHHHHHhCCcceEEEeccccccCCCC-Ccccc-------cchhhHHHHHHHHHHcCcEEEecccc
Confidence 456788899999999998754333221110 11232 23478999999999999999986543
No 105
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=67.93 E-value=19 Score=39.40 Aligned_cols=62 Identities=18% Similarity=0.322 Sum_probs=46.6
Q ss_pred CHHHHHHHHHHHHHcCCEEEeeeeeccccccccccCCCccccCCCCCCCCCcccCCCCCCCCCCCccCCCCCCCCCCCCC
Q 004353 572 NIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDH 651 (759)
Q Consensus 572 T~edfk~LV~aaH~~GIkVIlDvV~NH~~~~~~~~~~~w~~~~~~~~w~~~~~~~~~~~f~~~g~~~~~~~~~~lpdLn~ 651 (759)
+.+++++-|+.||++|+|||+-+ +. |... ...
T Consensus 58 ~~~~~~~~i~~~q~~G~KVllSi-----GG-----------------~~~~--------------------------~~~ 89 (312)
T cd02871 58 SPAEFKADIKALQAKGKKVLISI-----GG-----------------ANGH--------------------------VDL 89 (312)
T ss_pred ChHHHHHHHHHHHHCCCEEEEEE-----eC-----------------CCCc--------------------------ccc
Confidence 56789999999999999999854 21 1000 012
Q ss_pred CCHHHHHHHHHHHHHHHHcCCccEEEEecc
Q 004353 652 SQDFVRKDIKEWLCWLRNEIGYDGWRLDFV 681 (759)
Q Consensus 652 ~np~Vr~~i~d~l~~Wi~e~GVDGFRlD~a 681 (759)
.++.-|+.+.+.+..+++++|+||+-||-=
T Consensus 90 ~~~~~~~~fa~sl~~~~~~~g~DGiDiD~E 119 (312)
T cd02871 90 NHTAQEDNFVDSIVAIIKEYGFDGLDIDLE 119 (312)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCeEEEecc
Confidence 356778888888888888999999999984
No 106
>PRK11052 malQ 4-alpha-glucanotransferase; Provisional
Probab=65.76 E-value=20 Score=43.83 Aligned_cols=24 Identities=13% Similarity=0.293 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHcCC--EEEeeeeec
Q 004353 574 DELKDVVNKFHDVGM--KILGDVVLN 597 (759)
Q Consensus 574 edfk~LV~aaH~~GI--kVIlDvV~N 597 (759)
.+++++-+.|+++|| ++|.|+-+-
T Consensus 355 ~Ql~~~~~~A~~~Gm~igL~gDLpvg 380 (695)
T PRK11052 355 SQFAACWQLSQQLGMPIGLYRDLAVG 380 (695)
T ss_pred HHHHHHHHHHHHCCCceeEEEeeece
Confidence 478889999999999 679999863
No 107
>PRK15452 putative protease; Provisional
Probab=65.34 E-value=51 Score=38.23 Aligned_cols=50 Identities=16% Similarity=0.193 Sum_probs=33.6
Q ss_pred HhHHHHHhcCCCEEEECCC-CCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCEEEe
Q 004353 531 EKATELSSLGFSVIWLPPP-TESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILG 592 (759)
Q Consensus 531 ekLdYLk~LGvtaIwL~PI-f~s~s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIkVIl 592 (759)
++|...-+.|.++||+..- |... ....+| +.++|++.|+.||++|++|++
T Consensus 14 e~l~aAi~~GADaVY~G~~~~~~R----~~~~~f--------~~edl~eav~~ah~~g~kvyv 64 (443)
T PRK15452 14 KNMRYAFAYGADAVYAGQPRYSLR----VRNNEF--------NHENLALGINEAHALGKKFYV 64 (443)
T ss_pred HHHHHHHHCCCCEEEECCCccchh----hhccCC--------CHHHHHHHHHHHHHcCCEEEE
Confidence 3444444779999999542 1111 011122 468999999999999999987
No 108
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=63.95 E-value=19 Score=41.70 Aligned_cols=77 Identities=8% Similarity=0.050 Sum_probs=52.0
Q ss_pred CHHHHHHhHHHHHhcCCCEEEECC----CC--CC---------CCCCCCCcccCCccCCCCC-------------CHHHH
Q 004353 525 WYMELKEKATELSSLGFSVIWLPP----PT--ES---------VSPEGYMPRDLYNLSSRYG-------------NIDEL 576 (759)
Q Consensus 525 ~l~GI~ekLdYLk~LGvtaIwL~P----If--~s---------~s~hGYdp~Dy~~Idp~~G-------------T~edf 576 (759)
....|.+-+|.++..++|.++|-= -| +. .++.++...+...+-|.+| |.+|+
T Consensus 20 ~~~~ik~~Id~ma~~K~N~lHlHLtDdqgwriei~~~P~Lt~~ga~r~~~~~~~~~~~~~~~~~~~~~~~~~g~YT~~di 99 (445)
T cd06569 20 SKETVLKLLDQMAAYKLNKLHLHLTDDEGWRLEIPGLPELTEVGAKRCHDLSETTCLLPQLGSGPDTNNSGSGYYSRADY 99 (445)
T ss_pred CHHHHHHHHHHHHHhCCceEEEEeecCCCcceeccCCchhhhcccccccccccccccccccccCcccCcccCCccCHHHH
Confidence 478899999999999999888731 11 00 1122332222222222222 78999
Q ss_pred HHHHHHHHHcCCEEEeee-eeccccc
Q 004353 577 KDVVNKFHDVGMKILGDV-VLNHRCA 601 (759)
Q Consensus 577 k~LV~aaH~~GIkVIlDv-V~NH~~~ 601 (759)
++||+-|++|||.||-.+ ++.|+..
T Consensus 100 ~eiv~yA~~rgI~VIPEID~PGH~~a 125 (445)
T cd06569 100 IEILKYAKARHIEVIPEIDMPGHARA 125 (445)
T ss_pred HHHHHHHHHcCCEEEEccCCchhHHH
Confidence 999999999999999887 5788774
No 109
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=63.93 E-value=1.6e+02 Score=33.60 Aligned_cols=139 Identities=12% Similarity=0.056 Sum_probs=82.4
Q ss_pred HHHhHHHHHhcCCCEEEECCCCCCCCC---CCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCEEEeeeeeccccccccc
Q 004353 529 LKEKATELSSLGFSVIWLPPPTESVSP---EGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQN 605 (759)
Q Consensus 529 I~ekLdYLk~LGvtaIwL~PIf~s~s~---hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIkVIlDvV~NH~~~~~~~ 605 (759)
..+-++-+|+.|...|-|+- +++.+ +.=...+|..++... ..+-+++|+++|+++||++-+ -|...+
T Consensus 83 ~~~Wa~~~k~AGakY~vlTa--KHHDGF~lw~S~~t~~n~~~~~p-krDiv~el~~A~rk~Glk~G~----Y~S~~D--- 152 (384)
T smart00812 83 PEEWADLFKKAGAKYVVLTA--KHHDGFCLWDSKYSNWNAVDTGP-KRDLVGELADAVRKRGLKFGL----YHSLFD--- 152 (384)
T ss_pred HHHHHHHHHHcCCCeEEeee--eecCCccccCCCCCCCcccCCCC-CcchHHHHHHHHHHcCCeEEE----EcCHHH---
Confidence 35567788999999988764 33322 222233555555444 457899999999999999988 233222
Q ss_pred cCCCccccCCCCCCCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCHHHHHHH---HHHHHHHHHcCCccEEEEeccC
Q 004353 606 QNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDI---KEWLCWLRNEIGYDGWRLDFVR 682 (759)
Q Consensus 606 ~~~~w~~~~~~~~w~~~~~~~~~~~f~~~g~~~~~~~~~~lpdLn~~np~Vr~~i---~d~l~~Wi~e~GVDGFRlD~ak 682 (759)
|..+ .|... . . ........+...+|+ ..-++.++..||-|.+=+|.+-
T Consensus 153 -------------W~~p-------~y~~~--~----~---~~~~~~~~~~~~~y~~~~~~Ql~ELit~Ygpd~lWfD~~~ 203 (384)
T smart00812 153 -------------WFNP-------LYAGP--T----S---SDEDPDNWPRFQEFVDDWLPQLRELVTRYKPDLLWFDGGW 203 (384)
T ss_pred -------------hCCC-------ccccc--c----c---cccccccchhHHHHHHHHHHHHHHHHhcCCCceEEEeCCC
Confidence 2110 00000 0 0 000011234556666 6667788889999999999863
Q ss_pred ----cc--cHHHHHHHHHhCCCc--EEEEeec
Q 004353 683 ----GF--WGGYVKDYLEATEPY--FAVGEYW 706 (759)
Q Consensus 683 ----~f--~~~~~~~~~~~~p~~--~lvGE~w 706 (759)
.. +.++.+-+++..|++ .+|.--|
T Consensus 204 ~~~~~~~~~~~l~~~~~~~qP~~~~vvvn~R~ 235 (384)
T smart00812 204 EAPDDYWRSKEFLAWLYNLSPVKDTVVVNDRW 235 (384)
T ss_pred CCccchhcHHHHHHHHHHhCCCCceEEEEccc
Confidence 21 345666677777776 4554444
No 110
>cd02857 CD_pullulan_degrading_enzymes_N_term CD and pullulan-degrading enzymes N-terminus domain. Members of this subgroup include: Cyclomaltodextrinase (CDase), maltogenic amylase, and neopullulanase all of which are capable of hydrolyzing all or two of the following three types of substrates: cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. The N-terminus of the CD and pullulan-degrading enzymes may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of
Probab=62.80 E-value=6.6 Score=35.85 Aligned_cols=102 Identities=6% Similarity=-0.056 Sum_probs=60.2
Q ss_pred cccccccCccccCCCcceeEEEe---cCccceeEEEEEeCCCcccccCCcceEEeCCCCCCCCCcccccccccCCccccc
Q 004353 345 NKALRTLLQPKEGGKGCSRLFTV---DEEFAGFLFVLKLNENTWLKCMENDFYIPLTSSSCLPAESVQEMLIPGKAEEAT 421 (759)
Q Consensus 345 ~~a~eTpf~~~~~~~~~~~~~~L---~~~~~g~~FVL~~~~~~W~k~~g~dfyi~l~~~~~~~~~~~~~~~~~~~~~~~~ 421 (759)
+..++ ||++ ..+.|.| .+....+.+++. .++ | .+.. ..++|...+.+ +..+.|++ ++++.
T Consensus 7 ~~~~~-p~ga------~~v~irlr~~~~~v~~v~l~~~-~~~-~--~~~~-~~~~M~~~~~~---~~~~~~~~--~i~~~ 69 (116)
T cd02857 7 SEYAY-PYGA------DTLHIRLRTKKGDVAKVYLRYG-DPY-D--KGEE-EEVPMRKDGSD---ELFDYWEA--TLPPP 69 (116)
T ss_pred CceeE-EcCC------CEEEEEEEecCCCccEEEEEEE-CCC-C--CCCc-eEEEEEEeeeC---CceeEEEE--EEecC
Confidence 44566 8888 2466666 445667776665 332 1 1122 47799776654 44567877 67665
Q ss_pred cccchhhhhhhHhhheeeeeeccccccccc--ccchhhhhhhhHHh
Q 004353 422 QEVSQTAYTAGIIKEIRNLVSDFSSDISRK--TKSKEAQKSILLEI 465 (759)
Q Consensus 422 ~~~~~~~y~~~~~~~~~~l~~~~~~~~~~~--~~~~~~q~~~~~~~ 465 (759)
. +..+|+|.+..+-.....+..+..... .....+|++++.+.
T Consensus 70 ~--~~~~Y~F~l~~~~~~~~y~~~G~~~~~~~~~~~~Fq~t~~~~~ 113 (116)
T cd02857 70 T--GRLRYYFELVDDGETVWYGEEGFSDEPPDTDANYFQFPYIHPA 113 (116)
T ss_pred C--cEEEEEEEEEcCCEEEEEeCCccccccccccCCceeeCccCHH
Confidence 4 899999999754444444443322222 13456788877554
No 111
>PF02446 Glyco_hydro_77: 4-alpha-glucanotransferase; InterPro: IPR003385 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The enzymes in this entry (2.4.1.25 from EC) belong to the glycoside hydrolase family 77 GH77 from CAZY, and transfer a segment of a (1,4)-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or (1,4)-alpha-D-glucan []. They belong to the disproportionating family of enzymes.; GO: 0004134 4-alpha-glucanotransferase activity, 0005975 carbohydrate metabolic process; PDB: 1TZ7_A 2X1I_A 2OWX_A 2OWW_A 1FP9_A 1CWY_A 1ESW_A 1FP8_A 2OWC_A 1X1N_A.
Probab=60.66 E-value=23 Score=41.58 Aligned_cols=115 Identities=16% Similarity=0.194 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHcCCEEEeeeeec--ccccc-ccccCCCccccCCCCCCCCCcccCCCCCCCCCCCccCCCCCCCCCCCC
Q 004353 574 DELKDVVNKFHDVGMKILGDVVLN--HRCAH-YQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNID 650 (759)
Q Consensus 574 edfk~LV~aaH~~GIkVIlDvV~N--H~~~~-~~~~~~~w~~~~~~~~w~~~~~~~~~~~f~~~g~~~~~~~~~~lpdLn 650 (759)
.+++++-+.|+++||+||.|+-+- +-|.+ |.++ ..+..+. . -..| ...|+..|..+ ++|-+|
T Consensus 192 ~Q~~~~~~~A~~~gI~L~gDlpigv~~dsaDvW~~~--~lF~~~~----~-aGaP--PD~fs~~GQ~W------G~P~y~ 256 (496)
T PF02446_consen 192 KQWKAAKEYAREMGIGLIGDLPIGVSPDSADVWANP--ELFLLDA----S-AGAP--PDYFSPTGQNW------GNPPYN 256 (496)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEESS--SSSHHHHH-G--GGB-B-E----E-EEE---SSSSSSS-EEE------EEE-B-
T ss_pred HHHHHHHHHHHHCCCEEEEeccceECCCcHHHHhCH--HHHhCcC----e-eCCC--CCCCCcccccC------CCCCcC
Confidence 479999999999999999999854 33322 2111 1111110 0 0000 11233333221 234333
Q ss_pred CCCHHHH-----HHHHHHHHHHHHcCCccEEEEeccCcc----------------------cHHHHHHHHHhCC-CcEEE
Q 004353 651 HSQDFVR-----KDIKEWLCWLRNEIGYDGWRLDFVRGF----------------------WGGYVKDYLEATE-PYFAV 702 (759)
Q Consensus 651 ~~np~Vr-----~~i~d~l~~Wi~e~GVDGFRlD~ak~f----------------------~~~~~~~~~~~~p-~~~lv 702 (759)
+... +.+++-+++.+ .-+|++|||++.+| ..++++.+....+ ++.+|
T Consensus 257 ---w~~l~~~gy~ww~~rl~~~~--~~~d~lRIDH~~Gf~r~W~IP~~~~~a~~G~~~~~p~~~ll~~l~~e~~r~~~vi 331 (496)
T PF02446_consen 257 ---WDALKEDGYRWWIDRLRANM--RLFDALRIDHFRGFFRYWWIPAGGETAIDGAWVRYPGEDLLAILALESGRDCLVI 331 (496)
T ss_dssp ---HHHHHHTTTHHHHHHHHHHH--CC-SEEEEETGGGGTEEEEEETT-SSSTT-EEEE--HHHHHHHHHHHHS-S-EEE
T ss_pred ---HHHHHHcCCHHHHHHHHHHH--HhCCchHHHHHHHHHheeEecCCCCCCCCceeecchHHHHHHHHHHHcCCCCcEE
Confidence 2221 12444455554 36899999998643 2356667777777 89999
Q ss_pred EeecCC
Q 004353 703 GEYWDS 708 (759)
Q Consensus 703 GE~w~~ 708 (759)
||--..
T Consensus 332 gEDLG~ 337 (496)
T PF02446_consen 332 GEDLGT 337 (496)
T ss_dssp E--TSS
T ss_pred EeecCC
Confidence 998654
No 112
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=60.38 E-value=27 Score=36.34 Aligned_cols=62 Identities=15% Similarity=0.144 Sum_probs=43.4
Q ss_pred CHHHHHHhHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccCCC-------CCCHHHHHHHHHHHHHcCCEEEe
Q 004353 525 WYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSR-------YGNIDELKDVVNKFHDVGMKILG 592 (759)
Q Consensus 525 ~l~GI~ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Idp~-------~GT~edfk~LV~aaH~~GIkVIl 592 (759)
+-+.|..-++.|+++|+..|.|.|.+. +...-|..++.. -=+.++++++.+.+.++|+++++
T Consensus 143 ~~e~i~~ia~~l~~l~~~~~~llpyh~------~g~~Ky~~lg~~y~~~~~~~~~~~~l~~~~~~~~~~gl~~~i 211 (213)
T PRK10076 143 SRENMQQALDVLIPLGIKQIHLLPFHQ------YGEPKYRLLGKTWSMKEVPAPSSADVATMREMAERAGFQVTV 211 (213)
T ss_pred CHHHHHHHHHHHHHcCCceEEEecCCc------cchhHHHHcCCcCccCCCCCcCHHHHHHHHHHHHHcCCeEEe
Confidence 356677777888889999999998543 333333322222 12578899999999999999975
No 113
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=58.13 E-value=12 Score=41.56 Aligned_cols=59 Identities=14% Similarity=0.180 Sum_probs=42.1
Q ss_pred CHHHHHHhHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCEEEeeeeec
Q 004353 525 WYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLN 597 (759)
Q Consensus 525 ~l~GI~ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIkVIlDvV~N 597 (759)
.....++-|+...+.|++.|..+=.......+ +-..-|++|++.||+.||+||+|+-+.
T Consensus 14 ~~~~~~~Yi~~~~~~Gf~~IFtsl~~~~~~~~--------------~~~~~~~ell~~Anklg~~vivDvnPs 72 (360)
T COG3589 14 PKEKDIAYIDRMHKYGFKRIFTSLLIPEEDAE--------------LYFHRFKELLKEANKLGLRVIVDVNPS 72 (360)
T ss_pred cchhHHHHHHHHHHcCccceeeecccCCchHH--------------HHHHHHHHHHHHHHhcCcEEEEEcCHH
Confidence 34456666777778999999876433222111 113459999999999999999999876
No 114
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=57.50 E-value=35 Score=37.31 Aligned_cols=71 Identities=14% Similarity=0.131 Sum_probs=48.1
Q ss_pred CHHHHHHhHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccC--CCCCCHHHHHHHHHHHHHcCCEEEeee-eeccccc
Q 004353 525 WYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLS--SRYGNIDELKDVVNKFHDVGMKILGDV-VLNHRCA 601 (759)
Q Consensus 525 ~l~GI~ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Id--p~~GT~edfk~LV~aaH~~GIkVIlDv-V~NH~~~ 601 (759)
..+.|.+-++.++.+|+|.++|-= -+. |....+-.+. ...=|.+|++++++-|.++||.||-.+ ++.|+..
T Consensus 15 ~~~~lk~~id~ma~~k~N~l~lhl-~D~-----f~~~~~p~~~~~~~~yT~~ei~ei~~yA~~~gI~vIPeid~pGH~~~ 88 (301)
T cd06565 15 KVSYLKKLLRLLALLGANGLLLYY-EDT-----FPYEGEPEVGRMRGAYTKEEIREIDDYAAELGIEVIPLIQTLGHLEF 88 (301)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEE-ecc-----eecCCCcccccCCCCcCHHHHHHHHHHHHHcCCEEEecCCCHHHHHH
Confidence 368899999999999999998821 000 1001111111 122278999999999999999999765 3666653
No 115
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=57.35 E-value=27 Score=37.18 Aligned_cols=46 Identities=22% Similarity=0.472 Sum_probs=35.8
Q ss_pred HHhHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCEEEee
Q 004353 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGD 593 (759)
Q Consensus 530 ~ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIkVIlD 593 (759)
.+-++++++|||++|-++- |. ..+ +.++..+||+.++++|++|+-.
T Consensus 74 ~~Yl~~~k~lGf~~IEiS~--------G~-----~~i-----~~~~~~rlI~~~~~~g~~v~~E 119 (237)
T TIGR03849 74 DEYLNECDELGFEAVEISD--------GS-----MEI-----SLEERCNLIERAKDNGFMVLSE 119 (237)
T ss_pred HHHHHHHHHcCCCEEEEcC--------Cc-----cCC-----CHHHHHHHHHHHHhCCCeEecc
Confidence 3345599999999999983 21 122 3788999999999999999864
No 116
>TIGR03356 BGL beta-galactosidase.
Probab=56.98 E-value=23 Score=40.72 Aligned_cols=63 Identities=16% Similarity=0.269 Sum_probs=44.0
Q ss_pred HHHHHHhHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCEEEeeee
Q 004353 526 YMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVV 595 (759)
Q Consensus 526 l~GI~ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIkVIlDvV 595 (759)
+.-..+-++-|++||++++=++=-+...-..|-. .+ .-...+-++++|++|+++||++|+++.
T Consensus 53 y~~y~eDi~l~~~~G~~~~R~si~Wsri~p~g~~-----~~--n~~~~~~y~~~i~~l~~~gi~pivtL~ 115 (427)
T TIGR03356 53 YHRYEEDVALMKELGVDAYRFSIAWPRIFPEGTG-----PV--NPKGLDFYDRLVDELLEAGIEPFVTLY 115 (427)
T ss_pred HHhHHHHHHHHHHcCCCeEEcccchhhcccCCCC-----Cc--CHHHHHHHHHHHHHHHHcCCeeEEeec
Confidence 6788899999999999999886433221111110 00 111245689999999999999999985
No 117
>PRK14508 4-alpha-glucanotransferase; Provisional
Probab=56.85 E-value=24 Score=41.42 Aligned_cols=53 Identities=11% Similarity=-0.036 Sum_probs=44.7
Q ss_pred CCCHH-HHHHhHHHHHhcCCCEEEECCCCCCC-CCCCCCcccCCccCCCCCCHHH
Q 004353 523 GRWYM-ELKEKATELSSLGFSVIWLPPPTESV-SPEGYMPRDLYNLSSRYGNIDE 575 (759)
Q Consensus 523 Gg~l~-GI~ekLdYLk~LGvtaIwL~PIf~s~-s~hGYdp~Dy~~Idp~~GT~ed 575 (759)
-|+|- .+.+-++.+++.|++.|+|+|+.... .+..|.+.+-+.+||-|=+.+.
T Consensus 22 iGDfg~dl~~~id~~~~~G~~~~qilPl~~~~~~~SPY~~~S~~alnplyI~l~~ 76 (497)
T PRK14508 22 IGDFGKGAYEFIDFLAEAGQSYWQILPLGPTGYGDSPYQSFSAFAGNPLLIDLEA 76 (497)
T ss_pred CcchHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCcCcccccccChhhcChhh
Confidence 47884 99999999999999999999999754 3468999999999987776543
No 118
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=55.76 E-value=1.2e+02 Score=32.12 Aligned_cols=54 Identities=19% Similarity=0.300 Sum_probs=38.2
Q ss_pred HHHHhHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCEEEe
Q 004353 528 ELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILG 592 (759)
Q Consensus 528 GI~ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIkVIl 592 (759)
.+.+.++.++++|+++|.|.+.... ....+.+ + +.++++++.+.+.++||+|..
T Consensus 17 ~~~e~~~~~~~~G~~~iEl~~~~~~---~~~~~~~-------~-~~~~~~~l~~~l~~~Gl~i~~ 70 (284)
T PRK13210 17 SWEERLVFAKELGFDFVEMSVDESD---ERLARLD-------W-SKEERLSLVKAIYETGVRIPS 70 (284)
T ss_pred CHHHHHHHHHHcCCCeEEEecCCcc---ccccccc-------C-CHHHHHHHHHHHHHcCCCceE
Confidence 5788999999999999999742110 0011111 1 456789999999999999874
No 119
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=54.21 E-value=26 Score=38.59 Aligned_cols=61 Identities=13% Similarity=0.181 Sum_probs=46.1
Q ss_pred HHhHHHHHhcCCC-EEEECCCCCCCCCCCCCcccC-CccCCCCCCHHHHHHHHHHHHHcCCEEEeeeeecc
Q 004353 530 KEKATELSSLGFS-VIWLPPPTESVSPEGYMPRDL-YNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNH 598 (759)
Q Consensus 530 ~ekLdYLk~LGvt-aIwL~PIf~s~s~hGYdp~Dy-~~Idp~~GT~edfk~LV~aaH~~GIkVIlDvV~NH 598 (759)
.+.|..|++.|++ .|.|.+ ++. +..-. ..++..+ |.+++.+.++.+|++||+|.+++.+..
T Consensus 117 ~e~L~~l~~aG~~~~v~iG~--ES~-----~d~~L~~~inKg~-t~~~~~~ai~~~~~~Gi~v~~~~i~G~ 179 (313)
T TIGR01210 117 EEKLEELRKIGVNVEVAVGL--ETA-----NDRIREKSINKGS-TFEDFIRAAELARKYGAGVKAYLLFKP 179 (313)
T ss_pred HHHHHHHHHcCCCEEEEEec--CcC-----CHHHHHHhhCCCC-CHHHHHHHHHHHHHcCCcEEEEEEecC
Confidence 6788899999998 698864 111 11122 1355555 788999999999999999999999874
No 120
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=54.00 E-value=27 Score=37.25 Aligned_cols=50 Identities=26% Similarity=0.390 Sum_probs=36.0
Q ss_pred HHHHhHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCEEEeeee
Q 004353 528 ELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVV 595 (759)
Q Consensus 528 GI~ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIkVIlDvV 595 (759)
.+.+-++++++|||++|-++= |+-.. +.++..++|+.+.++|++|+-.+=
T Consensus 85 ~~~~yl~~~k~lGf~~IEiSd--------Gti~l----------~~~~r~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 85 KFDEYLEECKELGFDAIEISD--------GTIDL----------PEEERLRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp -HHHHHHHHHHCT-SEEEE----------SSS-------------HHHHHHHHHHHCCTTSEEEEEES
T ss_pred hHHHHHHHHHHcCCCEEEecC--------CceeC----------CHHHHHHHHHHHHHCCCEEeeccc
Confidence 456678899999999999973 32222 368899999999999999987653
No 121
>PLN03059 beta-galactosidase; Provisional
Probab=53.99 E-value=25 Score=43.63 Aligned_cols=59 Identities=12% Similarity=0.101 Sum_probs=41.7
Q ss_pred HHHHHhHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCEEEee
Q 004353 527 MELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGD 593 (759)
Q Consensus 527 ~GI~ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIkVIlD 593 (759)
+--.+.|.-+|++|+|+|-.==++..+... +-. -.|.+..||.++++.|++.||.||+=
T Consensus 59 ~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~---~G~-----~dF~G~~DL~~Fl~la~e~GLyvilR 117 (840)
T PLN03059 59 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPS---PGN-----YYFEDRYDLVKFIKVVQAAGLYVHLR 117 (840)
T ss_pred HHHHHHHHHHHHcCCCeEEEEecccccCCC---CCe-----eeccchHHHHHHHHHHHHcCCEEEec
Confidence 345678888999999999864433322111 111 12456889999999999999999994
No 122
>PRK07094 biotin synthase; Provisional
Probab=53.61 E-value=24 Score=38.64 Aligned_cols=65 Identities=9% Similarity=0.055 Sum_probs=49.5
Q ss_pred HHhHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCEEEeeeeecccccc
Q 004353 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAH 602 (759)
Q Consensus 530 ~ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIkVIlDvV~NH~~~~ 602 (759)
.+.+..|++.|++.|.+.. ...++.-|-.+.+. .+.++..+.++.+|+.||.|..++++.+-+..
T Consensus 129 ~e~l~~Lk~aG~~~v~~gl-------Es~~~~~~~~i~~~-~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget 193 (323)
T PRK07094 129 YEEYKAWKEAGADRYLLRH-------ETADKELYAKLHPG-MSFENRIACLKDLKELGYEVGSGFMVGLPGQT 193 (323)
T ss_pred HHHHHHHHHcCCCEEEecc-------ccCCHHHHHHhCCC-CCHHHHHHHHHHHHHcCCeecceEEEECCCCC
Confidence 5678899999999998754 22223333445553 67899999999999999999999999986643
No 123
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=52.61 E-value=17 Score=39.86 Aligned_cols=75 Identities=12% Similarity=0.228 Sum_probs=47.9
Q ss_pred CHHHHHHhHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccCC----------CCCCHHHHHHHHHHHHHcCCEEEeee
Q 004353 525 WYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSS----------RYGNIDELKDVVNKFHDVGMKILGDV 594 (759)
Q Consensus 525 ~l~GI~ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Idp----------~~GT~edfk~LV~aaH~~GIkVIlDv 594 (759)
..+.|.+-++.++.+++|.++|-- .+. ..+++....|-.+.. .+=|.+|+++||+-|+++||.||-.+
T Consensus 16 ~~~~ik~~id~ma~~k~N~lhlhl-~D~-~~~~~~~~~~p~l~~~ga~~~~~~~~~yT~~di~~lv~yA~~~gI~VIPei 93 (351)
T PF00728_consen 16 SVDTIKRLIDQMAYYKLNVLHLHL-SDD-QGFRLESKSYPELTEKGAYRPSDAGGYYTKEDIRELVAYAKERGIEVIPEI 93 (351)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEEEE-ESS-TCB-BEBSTSTHHHHTTTESTTCTESEBEHHHHHHHHHHHHHTT-EEEEEE
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEE-ecC-CCCccccCCCccccccCccccccccccCCHHHHHHHHHHHHHcCCceeeec
Confidence 478999999999999999998842 111 011111111111110 03368999999999999999999988
Q ss_pred -eeccccc
Q 004353 595 -VLNHRCA 601 (759)
Q Consensus 595 -V~NH~~~ 601 (759)
++.|++.
T Consensus 94 d~PGH~~~ 101 (351)
T PF00728_consen 94 DTPGHAEA 101 (351)
T ss_dssp EESSS-HH
T ss_pred cCchHHHH
Confidence 6788875
No 124
>PRK11052 malQ 4-alpha-glucanotransferase; Provisional
Probab=52.42 E-value=35 Score=41.77 Aligned_cols=71 Identities=20% Similarity=0.179 Sum_probs=53.4
Q ss_pred eeeeccccccc--CCCCCCHHHHHHhHHHHHhcCCCEEEECCCCCC-----CCCCCCCcccCCccCCCCCCHHHHHHH
Q 004353 509 EILCQGFNWES--HKSGRWYMELKEKATELSSLGFSVIWLPPPTES-----VSPEGYMPRDLYNLSSRYGNIDELKDV 579 (759)
Q Consensus 509 ev~~~~F~Wds--~~~Gg~l~GI~ekLdYLk~LGvtaIwL~PIf~s-----~s~hGYdp~Dy~~Idp~~GT~edfk~L 579 (759)
.+.++-|.--| +.+=|||..+.+-++.+++.|.+.+.|+|+... ..+..|.|.+-+.+||-|=+.+.+-++
T Consensus 145 Gv~~qlySLrs~~~~GIGDfgdl~~l~d~~a~~G~~~~qlnPlha~~p~~p~~~SPYsp~Sr~alNPlyI~~e~l~e~ 222 (695)
T PRK11052 145 GACVQLYTLRSEHNWGIGDFGDLKQMLEDVAKRGGDFIGLNPIHALYPANPESASPYSPSSRRWLNVIYIDVNAVEDF 222 (695)
T ss_pred EEEeccccCCCCCCCCeecHHHHHHHHHHHHHcCCCEEEECCCCcCCCCCCCCCCCcccccccccChHHcCHHHHhhh
Confidence 34444444333 222378888999999999999999999999953 356889999999999988887766554
No 125
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=51.74 E-value=45 Score=37.03 Aligned_cols=75 Identities=16% Similarity=0.175 Sum_probs=50.8
Q ss_pred CHHHHHHhHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccC------------CCCCCHHHHHHHHHHHHHcCCEEEe
Q 004353 525 WYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLS------------SRYGNIDELKDVVNKFHDVGMKILG 592 (759)
Q Consensus 525 ~l~GI~ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Id------------p~~GT~edfk~LV~aaH~~GIkVIl 592 (759)
..+.|.+-+|.++..++|.++|--. +. .++++....|-.+- ..+=|.+|+++||+-|.++||.||-
T Consensus 16 ~~~~lk~~id~ma~~KlN~lhlHLt-D~-~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~di~elv~yA~~rgI~vIP 93 (329)
T cd06568 16 TVAEVKRYIDLLALYKLNVLHLHLT-DD-QGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQEDYKDIVAYAAERHITVVP 93 (329)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEEee-cC-CcceeeecCcccccccccccccCCCCCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence 4788999999999999999988431 11 11222222221111 1122789999999999999999998
Q ss_pred ee-eeccccc
Q 004353 593 DV-VLNHRCA 601 (759)
Q Consensus 593 Dv-V~NH~~~ 601 (759)
.+ ++-|+..
T Consensus 94 EiD~PGH~~a 103 (329)
T cd06568 94 EIDMPGHTNA 103 (329)
T ss_pred ecCCcHHHHH
Confidence 77 4677664
No 126
>PRK15447 putative protease; Provisional
Probab=51.63 E-value=41 Score=36.84 Aligned_cols=48 Identities=6% Similarity=0.169 Sum_probs=35.5
Q ss_pred HhHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCEEEe
Q 004353 531 EKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILG 592 (759)
Q Consensus 531 ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIkVIl 592 (759)
.-...|++.|+++||+.-..-+... .| +.+++++.|+.+|++|.+|++
T Consensus 19 ~~~~~~~~~gaDaVY~g~~~~~~R~-------------~f-~~~~l~e~v~~~~~~gkkvyv 66 (301)
T PRK15447 19 DFYQRAADSPVDIVYLGETVCSKRR-------------EL-KVGDWLELAERLAAAGKEVVL 66 (301)
T ss_pred HHHHHHHcCCCCEEEECCccCCCcc-------------CC-CHHHHHHHHHHHHHcCCEEEE
Confidence 3346788999999999832211110 12 679999999999999999988
No 127
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=51.54 E-value=26 Score=39.14 Aligned_cols=65 Identities=15% Similarity=0.174 Sum_probs=49.2
Q ss_pred HHhHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCE-EEeeeeecccccc
Q 004353 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK-ILGDVVLNHRCAH 602 (759)
Q Consensus 530 ~ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIk-VIlDvV~NH~~~~ 602 (759)
.++|..|+++||+.|.|..= ..++.-+..+ .+-.+.++..+.++.+++.|+. |-+|+++...+..
T Consensus 100 ~e~l~~l~~~Gv~risiGvq-------S~~~~~l~~l-gR~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt 165 (360)
T TIGR00539 100 AEWCKGLKGAGINRLSLGVQ-------SFRDDKLLFL-GRQHSAKNIAPAIETALKSGIENISLDLMYGLPLQT 165 (360)
T ss_pred HHHHHHHHHcCCCEEEEecc-------cCChHHHHHh-CCCCCHHHHHHHHHHHHHcCCCeEEEeccCCCCCCC
Confidence 47889999999999998741 2222223344 4557889999999999999995 7899999876653
No 128
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=51.19 E-value=29 Score=40.67 Aligned_cols=65 Identities=18% Similarity=0.286 Sum_probs=49.9
Q ss_pred HHhHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCC-EEEeeeeecccccc
Q 004353 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGM-KILGDVVLNHRCAH 602 (759)
Q Consensus 530 ~ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GI-kVIlDvV~NH~~~~ 602 (759)
.++|..|+++|++.|.|.|=. .+..-+..++ +-.+.+++.+.++.|++.|+ .|-+|+.+.--+..
T Consensus 269 ~e~L~~Lk~~Gv~RISIGvQS-------~~d~vLk~ig-R~ht~e~v~~ai~~ar~~Gf~~In~DLI~GLPgEt 334 (488)
T PRK08207 269 EEKLEVLKKYGVDRISINPQT-------MNDETLKAIG-RHHTVEDIIEKFHLAREMGFDNINMDLIIGLPGEG 334 (488)
T ss_pred HHHHHHHHhcCCCeEEEcCCc-------CCHHHHHHhC-CCCCHHHHHHHHHHHHhCCCCeEEEEEEeCCCCCC
Confidence 578999999999999998722 2222223443 34688999999999999999 78899999876653
No 129
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=50.61 E-value=1.2e+02 Score=33.93 Aligned_cols=28 Identities=18% Similarity=0.298 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHcCCEEEeeeeecccccc
Q 004353 573 IDELKDVVNKFHDVGMKILGDVVLNHRCAH 602 (759)
Q Consensus 573 ~edfk~LV~aaH~~GIkVIlDvV~NH~~~~ 602 (759)
.+.|++|++++|++|-+++ +-++|.|..
T Consensus 77 i~~~~~l~~~vh~~G~~i~--~QL~h~G~~ 104 (353)
T cd04735 77 IPGLRKLAQAIKSKGAKAI--LQIFHAGRM 104 (353)
T ss_pred hHHHHHHHHHHHhCCCeEE--EEecCCCCC
Confidence 5789999999999999988 677898763
No 130
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=50.58 E-value=40 Score=36.67 Aligned_cols=69 Identities=20% Similarity=0.283 Sum_probs=38.9
Q ss_pred HHHHHHhHHHHHhcCCCEEEECCCCCCCC-----CCCCCc--------ccCCccCCCCCCHHHHHHHHHHHHHcCCEEEe
Q 004353 526 YMELKEKATELSSLGFSVIWLPPPTESVS-----PEGYMP--------RDLYNLSSRYGNIDELKDVVNKFHDVGMKILG 592 (759)
Q Consensus 526 l~GI~ekLdYLk~LGvtaIwL~PIf~s~s-----~hGYdp--------~Dy~~Idp~~GT~edfk~LV~aaH~~GIkVIl 592 (759)
...+..-|+.+++-|||.|.++=+-+..+ ..|+.+ .||..+||.| -+.+..+|+.|.++||.+
T Consensus 29 ~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~Y--F~~~d~~i~~a~~~Gi~~-- 104 (289)
T PF13204_consen 29 REEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAY--FDHLDRRIEKANELGIEA-- 104 (289)
T ss_dssp HHHHHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----H--HHHHHHHHHHHHHTT-EE--
T ss_pred HHHHHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHHH--HHHHHHHHHHHHHCCCeE--
Confidence 34555668888999999999965544221 133333 2444555433 467899999999999988
Q ss_pred eeeecc
Q 004353 593 DVVLNH 598 (759)
Q Consensus 593 DvV~NH 598 (759)
++|+=|
T Consensus 105 ~lv~~w 110 (289)
T PF13204_consen 105 ALVPFW 110 (289)
T ss_dssp EEESS-
T ss_pred EEEEEE
Confidence 466666
No 131
>PLN02950 4-alpha-glucanotransferase
Probab=49.16 E-value=44 Score=42.23 Aligned_cols=54 Identities=17% Similarity=0.259 Sum_probs=46.3
Q ss_pred CCHHHHHHhHHHHHhcCCCEEEECCCCCCCC------CCCCCcccCCccCCCCCCHHHHH
Q 004353 524 RWYMELKEKATELSSLGFSVIWLPPPTESVS------PEGYMPRDLYNLSSRYGNIDELK 577 (759)
Q Consensus 524 g~l~GI~ekLdYLk~LGvtaIwL~PIf~s~s------~hGYdp~Dy~~Idp~~GT~edfk 577 (759)
|+|..+.+-+|.+++.|.+.|+|.|+.+... ...|.+.+-+.+||.|=+.++|-
T Consensus 280 GDf~dl~~~id~~a~~G~~~~QilPl~~t~~~~~~~~SsPYs~~S~falNPlyI~l~~l~ 339 (909)
T PLN02950 280 GEFLDLKLLVDWAVKSGLHLVQLLPVNDTSVHGMWWDSYPYSSLSVFALHPLYLRVQALS 339 (909)
T ss_pred eCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCCCCCCCcCcccccccChhhcCHHHHH
Confidence 7898999999999999999999999987542 23799999999999998876663
No 132
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=49.12 E-value=31 Score=38.72 Aligned_cols=65 Identities=17% Similarity=0.153 Sum_probs=47.9
Q ss_pred HHhHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCE-EEeeeeecccccc
Q 004353 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK-ILGDVVLNHRCAH 602 (759)
Q Consensus 530 ~ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIk-VIlDvV~NH~~~~ 602 (759)
.++|+.|+++||+.|.|..= ..+..-...++ +-.+.++..+.++.+++.|+. |.+|++++.-+..
T Consensus 108 ~e~l~~l~~~G~~rvslGvQ-------S~~~~~L~~l~-R~~s~~~~~~a~~~l~~~g~~~v~~dli~GlPgqt 173 (375)
T PRK05628 108 PEFFAALRAAGFTRVSLGMQ-------SAAPHVLAVLD-RTHTPGRAVAAAREARAAGFEHVNLDLIYGTPGES 173 (375)
T ss_pred HHHHHHHHHcCCCEEEEecc-------cCCHHHHHHcC-CCCCHHHHHHHHHHHHHcCCCcEEEEEeccCCCCC
Confidence 47889999999999998741 11222222232 335778899999999999999 9999999887653
No 133
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=49.04 E-value=27 Score=40.13 Aligned_cols=65 Identities=15% Similarity=0.217 Sum_probs=47.2
Q ss_pred HHhHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCEEE-eeeeecccccc
Q 004353 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKIL-GDVVLNHRCAH 602 (759)
Q Consensus 530 ~ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIkVI-lDvV~NH~~~~ 602 (759)
.+.|..|+++|++.|.|.- ...+......++... +.++..+.++.+++.|+.+| +|+.++.-+..
T Consensus 141 ~e~l~~l~~~G~~rvslGv-------QS~~~~~L~~l~R~~-~~~~~~~ai~~l~~~g~~~i~~dlI~GlP~qt 206 (430)
T PRK08208 141 AEKLALLAARGVNRLSIGV-------QSFHDSELHALHRPQ-KRADVHQALEWIRAAGFPILNIDLIYGIPGQT 206 (430)
T ss_pred HHHHHHHHHcCCCEEEEec-------ccCCHHHHHHhCCCC-CHHHHHHHHHHHHHcCCCeEEEEeecCCCCCC
Confidence 5788999999999999863 111222223333333 67899999999999999865 99999877653
No 134
>PRK06256 biotin synthase; Validated
Probab=48.96 E-value=30 Score=38.14 Aligned_cols=60 Identities=13% Similarity=0.142 Sum_probs=46.4
Q ss_pred HHhHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCEEEeeeeecc
Q 004353 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNH 598 (759)
Q Consensus 530 ~ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIkVIlDvV~NH 598 (759)
.+.+..|++.|++.|.++. ++ ++.-|-.+.+. .+.++..+.++.||+.||+|...+++.+
T Consensus 152 ~e~l~~LkeaG~~~v~~~l--Et------s~~~~~~i~~~-~t~~~~i~~i~~a~~~Gi~v~~~~I~Gl 211 (336)
T PRK06256 152 EEQAERLKEAGVDRYNHNL--ET------SRSYFPNVVTT-HTYEDRIDTCEMVKAAGIEPCSGGIIGM 211 (336)
T ss_pred HHHHHHHHHhCCCEEecCC--cc------CHHHHhhcCCC-CCHHHHHHHHHHHHHcCCeeccCeEEeC
Confidence 4677889999999998753 32 22223445554 3789999999999999999999999987
No 135
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=48.79 E-value=3.5e+02 Score=30.18 Aligned_cols=67 Identities=15% Similarity=0.057 Sum_probs=43.2
Q ss_pred HHHHHhHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCC---HHHHHHHHHHHHHcCCEEEeeeeeccccc
Q 004353 527 MELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGN---IDELKDVVNKFHDVGMKILGDVVLNHRCA 601 (759)
Q Consensus 527 ~GI~ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Idp~~GT---~edfk~LV~aaH~~GIkVIlDvV~NH~~~ 601 (759)
+...+.....+.=|+..|..-.+.-++...+| +. .+.+-+ .+.|++|++++|++|-++++ -++|.|.
T Consensus 33 ~~~~~~y~~~A~gG~GlIi~e~~~v~~~~~~~-~~-----~~~l~~d~~i~~~~~l~~~vh~~g~~~~~--Ql~H~G~ 102 (343)
T cd04734 33 ERYIAYHEERARGGAGLIITEGSSVHPSDSPA-FG-----NLNASDDEIIPGFRRLAEAVHAHGAVIMI--QLTHLGR 102 (343)
T ss_pred HHHHHHHHHHHhCCCCEEEEeeeeeCCcccCC-CC-----ccccCCHHHHHHHHHHHHHHHhcCCeEEE--eccCCCc
Confidence 34455555566668888877655544433322 11 122223 35799999999999999988 6788775
No 136
>PLN02635 disproportionating enzyme
Probab=48.53 E-value=41 Score=39.95 Aligned_cols=69 Identities=17% Similarity=-0.007 Sum_probs=51.0
Q ss_pred eeeecccccccCCCCCCHHH-HHHhHHHHHhcCCCEEEECCCCCCC-----CCCCCCcccCCccCCCCCCHHHHH
Q 004353 509 EILCQGFNWESHKSGRWYME-LKEKATELSSLGFSVIWLPPPTESV-----SPEGYMPRDLYNLSSRYGNIDELK 577 (759)
Q Consensus 509 ev~~~~F~Wds~~~Gg~l~G-I~ekLdYLk~LGvtaIwL~PIf~s~-----s~hGYdp~Dy~~Idp~~GT~edfk 577 (759)
.|.++-|.--++.+=|||-. ...-++.+++.|.+.++|+|++... .+..|.+.+-+..||-|=+.+.|.
T Consensus 31 Gvll~l~SLps~~GIGDfg~~a~~fvd~la~~G~~~wQilPL~pt~~~~~~~~SPYs~~S~fa~NPlyI~le~L~ 105 (538)
T PLN02635 31 GILLHPTSLPGPYGIGDLGDEAFRFLDWLASTGCSVWQVLPLVPPGRKGGEDGSPYSGQDANCGNTLLISLEELV 105 (538)
T ss_pred EEEEccccCCCCCCCcchHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCCCCCcccccccccChhhcCHHhhh
Confidence 44555554333322378855 4578999999999999999998763 468899999899998887766543
No 137
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=47.62 E-value=1e+02 Score=33.62 Aligned_cols=121 Identities=21% Similarity=0.346 Sum_probs=73.1
Q ss_pred HHHHHHhHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCEEEeeeeecccccc--c
Q 004353 526 YMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAH--Y 603 (759)
Q Consensus 526 l~GI~ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIkVIlDvV~NH~~~~--~ 603 (759)
++-+..++..|.+-+++.|-+-|-...+ +..=.+.++++.+ .+.|.++|.=+-+-..... |
T Consensus 29 ~ql~d~~~~~i~~~~f~llVVDps~~g~-------------~~~~~~~eelr~~----~~gg~~pIAYlsIg~ae~yR~Y 91 (300)
T COG2342 29 YQLQDAYINEILNSPFDLLVVDPSYCGP-------------FNTPWTIEELRTK----ADGGVKPIAYLSIGEAESYRFY 91 (300)
T ss_pred hhcccchHHHHhcCCCcEEEEeccccCC-------------CCCcCcHHHHHHH----hcCCeeEEEEEechhhhhhhhH
Confidence 4456677888889999998887733222 2222346677654 4567788876666555432 1
Q ss_pred cccCCCccccCCCCCCCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCccEEEEeccCc
Q 004353 604 QNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRG 683 (759)
Q Consensus 604 ~~~~~~w~~~~~~~~w~~~~~~~~~~~f~~~g~~~~~~~~~~lpdLn~~np~Vr~~i~d~l~~Wi~e~GVDGFRlD~ak~ 683 (759)
.+. .|. .+..+|-. ..+|. +.+--.+.+..|+.++.++..+...+ +.|+||.-+|.+..
T Consensus 92 wd~--~w~--~~~p~wLg----~edP~------------W~Gny~VkYW~~eWkdii~~~l~rL~-d~GfdGvyLD~VD~ 150 (300)
T COG2342 92 WDK--YWL--TGRPDWLG----EEDPE------------WPGNYAVKYWEPEWKDIIRSYLDRLI-DQGFDGVYLDVVDA 150 (300)
T ss_pred hhh--hhh--cCCccccc----CCCCC------------CCCCceeeccCHHHHHHHHHHHHHHH-HccCceEEEeeech
Confidence 010 010 01111111 01111 22223456678999999999999998 89999999999975
Q ss_pred c
Q 004353 684 F 684 (759)
Q Consensus 684 f 684 (759)
+
T Consensus 151 y 151 (300)
T COG2342 151 Y 151 (300)
T ss_pred H
Confidence 5
No 138
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=47.41 E-value=46 Score=35.69 Aligned_cols=60 Identities=17% Similarity=0.198 Sum_probs=45.7
Q ss_pred HHhHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCEEEeeeeecc
Q 004353 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNH 598 (759)
Q Consensus 530 ~ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIkVIlDvV~NH 598 (759)
.+.+..|++.|++.|.+.. + . ++.-|..+.+. .+.++..+.++.+|++||+|...+++.+
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~--E-~-----~~~~~~~i~~~-~s~~~~~~ai~~l~~~Gi~v~~~~i~Gl 182 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNL--D-T-----SQEFYSNIIST-HTYDDRVDTLENAKKAGLKVCSGGIFGL 182 (296)
T ss_pred HHHHHHHHHcCCCEEEEcc--c-C-----CHHHHhhccCC-CCHHHHHHHHHHHHHcCCEEEEeEEEeC
Confidence 6778899999999999973 3 1 12222334433 4788999999999999999999988876
No 139
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=46.76 E-value=65 Score=30.10 Aligned_cols=55 Identities=25% Similarity=0.385 Sum_probs=38.3
Q ss_pred CHHHHHHhHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCEEEe
Q 004353 525 WYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILG 592 (759)
Q Consensus 525 ~l~GI~ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIkVIl 592 (759)
.-..+..++..|++-|+++|.|+.=.....+++.=| ..+.++++|++.- |+.||.
T Consensus 50 pg~~~~~~~~~l~~~~~d~IHlssC~~~~~~~~~CP-----------~~~~~~~~I~~~~--gi~VV~ 104 (107)
T PF08821_consen 50 PGRKLVRRIKKLKKNGADVIHLSSCMVKGNPHGPCP-----------HIDEIKKIIEEKF--GIEVVE 104 (107)
T ss_pred ChhHHHHHHHHHHHCCCCEEEEcCCEecCCCCCCCC-----------CHHHHHHHHHHHh--CCCEee
Confidence 467888999999999999999998776544444222 2455555555432 998874
No 140
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=45.85 E-value=61 Score=35.78 Aligned_cols=73 Identities=22% Similarity=0.275 Sum_probs=49.5
Q ss_pred CHHHHHHhHHHHHhcCCCEEEECCCCCCCCCCCCCcccC--------------------Ccc--CCCCCCHHHHHHHHHH
Q 004353 525 WYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDL--------------------YNL--SSRYGNIDELKDVVNK 582 (759)
Q Consensus 525 ~l~GI~ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy--------------------~~I--dp~~GT~edfk~LV~a 582 (759)
....|.+-++.++.+++|.++|-= .+ ++++....+ ... ...+=|.+|+++||+-
T Consensus 15 ~~~~ik~~id~ma~~K~N~lhlHl-tD---~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT~~di~eiv~y 90 (326)
T cd06564 15 SMDFLKDIIKTMSWYKMNDLQLHL-ND---NLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYTKEEFKELIAY 90 (326)
T ss_pred CHHHHHHHHHHHHHcCCceEEEee-cC---CcccccCCCchhhhhhhhhccccccccccCCCCCCCCcccHHHHHHHHHH
Confidence 478899999999999999999820 00 111111111 001 1122278999999999
Q ss_pred HHHcCCEEEeee-eeccccc
Q 004353 583 FHDVGMKILGDV-VLNHRCA 601 (759)
Q Consensus 583 aH~~GIkVIlDv-V~NH~~~ 601 (759)
|.++||.||-.+ ++.|+..
T Consensus 91 A~~rgI~vIPEID~PGH~~a 110 (326)
T cd06564 91 AKDRGVNIIPEIDSPGHSLA 110 (326)
T ss_pred HHHcCCeEeccCCCcHHHHH
Confidence 999999999877 5677764
No 141
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=44.63 E-value=50 Score=36.07 Aligned_cols=75 Identities=13% Similarity=0.211 Sum_probs=51.0
Q ss_pred CHHHHHHhHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccC-----------CCCCCHHHHHHHHHHHHHcCCEEEee
Q 004353 525 WYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLS-----------SRYGNIDELKDVVNKFHDVGMKILGD 593 (759)
Q Consensus 525 ~l~GI~ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Id-----------p~~GT~edfk~LV~aaH~~GIkVIlD 593 (759)
....|.+-++.++.+++|.++|-= .+. .++++....|-.+- ..+=|.+|+++||+-|.++||.||-.
T Consensus 14 ~~~~lk~~id~ma~~K~N~lhlHl-~D~-~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~di~elv~yA~~rgI~viPE 91 (303)
T cd02742 14 SVESIKRTIDVLARYKINTFHWHL-TDD-QAWRIESKKFPELAEKGGQINPRSPGGFYTYAQLKDIIEYAAARGIEVIPE 91 (303)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEee-ecC-CCceEeeCccchhhhhcccccCCCCCCeECHHHHHHHHHHHHHcCCEEEEe
Confidence 478899999999999999998731 111 11222222222111 11336899999999999999999988
Q ss_pred e-eeccccc
Q 004353 594 V-VLNHRCA 601 (759)
Q Consensus 594 v-V~NH~~~ 601 (759)
+ ++.|+..
T Consensus 92 iD~PGH~~a 100 (303)
T cd02742 92 IDMPGHSTA 100 (303)
T ss_pred ccchHHHHH
Confidence 7 5788764
No 142
>PRK05660 HemN family oxidoreductase; Provisional
Probab=44.24 E-value=42 Score=37.88 Aligned_cols=64 Identities=16% Similarity=0.173 Sum_probs=48.9
Q ss_pred HhHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCEE-Eeeeeecccccc
Q 004353 531 EKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKI-LGDVVLNHRCAH 602 (759)
Q Consensus 531 ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIkV-IlDvV~NH~~~~ 602 (759)
++|..|+++||+.|.|.. ...++.-+..++ +..+.++..+.++.+++.|++. -+|+.+...+..
T Consensus 108 e~l~~Lk~~Gv~risiGv-------qS~~~~~L~~l~-r~~~~~~~~~ai~~~~~~G~~~v~~dli~Glpgqt 172 (378)
T PRK05660 108 DRFVGYQRAGVNRISIGV-------QSFSEEKLKRLG-RIHGPDEAKRAAKLAQGLGLRSFNLDLMHGLPDQS 172 (378)
T ss_pred HHHHHHHHcCCCEEEecc-------CcCCHHHHHHhC-CCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCC
Confidence 889999999999999874 223333333443 3468889999999999999975 599999887753
No 143
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=44.08 E-value=5.3e+02 Score=29.25 Aligned_cols=27 Identities=26% Similarity=0.342 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHcCCEEEeeeeeccc-cc
Q 004353 573 IDELKDVVNKFHDVGMKILGDVVLNHR-CA 601 (759)
Q Consensus 573 ~edfk~LV~aaH~~GIkVIlDvV~NH~-~~ 601 (759)
.+.||+|++++|++|-++++ -++|. +.
T Consensus 82 i~~~k~l~davh~~G~~i~~--QL~H~~Gr 109 (382)
T cd02931 82 IRTAKEMTERVHAYGTKIFL--QLTAGFGR 109 (382)
T ss_pred hHHHHHHHHHHHHcCCEEEE--EccCcCCC
Confidence 46799999999999999985 45686 54
No 144
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=43.85 E-value=63 Score=32.24 Aligned_cols=52 Identities=13% Similarity=0.141 Sum_probs=41.4
Q ss_pred CCHHHHHHhHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCEEEeee
Q 004353 524 RWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDV 594 (759)
Q Consensus 524 g~l~GI~ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIkVIlDv 594 (759)
.||.-..+..+-|+++||.+-- .|=+..-|++.+.+.++.++++|++||+=+
T Consensus 13 SD~~~mk~Aa~~L~~fgi~ye~-------------------~VvSAHRTPe~m~~ya~~a~~~g~~viIAg 64 (162)
T COG0041 13 SDWDTMKKAAEILEEFGVPYEV-------------------RVVSAHRTPEKMFEYAEEAEERGVKVIIAG 64 (162)
T ss_pred chHHHHHHHHHHHHHcCCCeEE-------------------EEEeccCCHHHHHHHHHHHHHCCCeEEEec
Confidence 4788999999999999996532 122333489999999999999999999843
No 145
>PLN02950 4-alpha-glucanotransferase
Probab=43.68 E-value=49 Score=41.84 Aligned_cols=24 Identities=17% Similarity=0.374 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHcCCEEEeeeeec
Q 004353 574 DELKDVVNKFHDVGMKILGDVVLN 597 (759)
Q Consensus 574 edfk~LV~aaH~~GIkVIlDvV~N 597 (759)
.+++++.+.|+++||+++.|+.+-
T Consensus 461 ~Ql~~~~~yA~~~Gi~L~GDLpig 484 (909)
T PLN02950 461 SQLSEAAEYARKKGVVLKGDLPIG 484 (909)
T ss_pred HHHHHHHHHHHHCCCEEEEEeece
Confidence 368899999999999999999874
No 146
>PLN03236 4-alpha-glucanotransferase; Provisional
Probab=42.98 E-value=44 Score=41.15 Aligned_cols=25 Identities=16% Similarity=0.302 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHcCCEEEeeeeecc
Q 004353 574 DELKDVVNKFHDVGMKILGDVVLNH 598 (759)
Q Consensus 574 edfk~LV~aaH~~GIkVIlDvV~NH 598 (759)
.+++++-+.|+++||.++.|+.+-=
T Consensus 274 ~Q~~~~~~yA~~~GI~L~GDLPIgV 298 (745)
T PLN03236 274 RQLRRAAAHAAAKGVILKGDLPIGV 298 (745)
T ss_pred HHHHHHHHHHHHCCCEEEEEeecee
Confidence 4788899999999999999998753
No 147
>PRK09936 hypothetical protein; Provisional
Probab=41.79 E-value=80 Score=34.64 Aligned_cols=59 Identities=14% Similarity=0.192 Sum_probs=44.5
Q ss_pred HHHHHHhHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHH-HHHHHHHHHHHcCCEEEeeeeecc
Q 004353 526 YMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNID-ELKDVVNKFHDVGMKILGDVVLNH 598 (759)
Q Consensus 526 l~GI~ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Idp~~GT~e-dfk~LV~aaH~~GIkVIlDvV~NH 598 (759)
...-.+.+..++.+|+++|.+. ..+| -|+.||+.+ -|.+++++|++.||+|++=+-++-
T Consensus 37 ~~qWq~~~~~~~~~G~~tLivQ-------Wt~y-------G~~~fg~~~g~La~~l~~A~~~Gl~v~vGL~~Dp 96 (296)
T PRK09936 37 DTQWQGLWSQLRLQGFDTLVVQ-------WTRY-------GDADFGGQRGWLAKRLAAAQQAGLKLVVGLYADP 96 (296)
T ss_pred HHHHHHHHHHHHHcCCcEEEEE-------eeec-------cCCCcccchHHHHHHHHHHHHcCCEEEEcccCCh
Confidence 4555677888999999999976 2233 233677654 699999999999999999776553
No 148
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=41.78 E-value=97 Score=33.09 Aligned_cols=44 Identities=16% Similarity=-0.027 Sum_probs=31.0
Q ss_pred CHHHHHHHHHHHHHHHHcCCccEEEEeccC----cccHHHHHHHHHhC
Q 004353 653 QDFVRKDIKEWLCWLRNEIGYDGWRLDFVR----GFWGGYVKDYLEAT 696 (759)
Q Consensus 653 np~Vr~~i~d~l~~Wi~e~GVDGFRlD~ak----~f~~~~~~~~~~~~ 696 (759)
++.-|+.+.+.+..+++++|+||+-||-=. .-...+++++++..
T Consensus 93 ~~~~r~~f~~s~~~~~~~~~~DGiDiDwE~p~~~~~~~~ll~~Lr~~~ 140 (256)
T cd06546 93 DDEDFERYYGQLRDMIRRRGLDGLDLDVEEPMSLDGIIRLIDRLRSDF 140 (256)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCceEEeeecCCCHhHHHHHHHHHHHHh
Confidence 455667777777778889999999999743 12345667777654
No 149
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=41.31 E-value=98 Score=34.39 Aligned_cols=67 Identities=21% Similarity=0.199 Sum_probs=40.5
Q ss_pred HHHHhHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCC---HHHHHHHHHHHHHcCCEEEeeeeecccccc
Q 004353 528 ELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGN---IDELKDVVNKFHDVGMKILGDVVLNHRCAH 602 (759)
Q Consensus 528 GI~ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Idp~~GT---~edfk~LV~aaH~~GIkVIlDvV~NH~~~~ 602 (759)
...+.....+.=|+.-|..-.+.-++.+.+|. -.+.+-+ .+.||+|++++|++|-++++- ++|.|..
T Consensus 37 ~~~~yy~~rA~GG~Glii~~~~~v~~~~~~~~------~~~~i~~d~~i~~~k~l~~~vh~~Ga~i~~Q--L~H~G~~ 106 (341)
T PF00724_consen 37 RLIAYYERRAKGGAGLIITEATAVSPEGRGFP------GQPGIWDDEQIPGLKKLADAVHAHGAKIIAQ--LWHAGRQ 106 (341)
T ss_dssp HHHHHHHHHHHTTTSEEEEEEEESSGGGSSST------TSEBSSSHHHHHHHHHHHHHHHHTTSEEEEE--EE--GGG
T ss_pred HHHHHHHHHhhcCCceEEeccccccccccccc------ccchhchhhHHHHHHHHHHHHHhcCccceee--ccccccc
Confidence 44555555566688888765554433222211 1112223 468999999999999999985 5788864
No 150
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=40.71 E-value=5.3e+02 Score=28.72 Aligned_cols=185 Identities=11% Similarity=0.166 Sum_probs=102.1
Q ss_pred CHHHHHHhHHHHHhcCCCEEEECCCCCCC-CCCCCCcccCCccCCCCCCH---HHHHHHHHHHHHcCCEEEeeeeecccc
Q 004353 525 WYMELKEKATELSSLGFSVIWLPPPTESV-SPEGYMPRDLYNLSSRYGNI---DELKDVVNKFHDVGMKILGDVVLNHRC 600 (759)
Q Consensus 525 ~l~GI~ekLdYLk~LGvtaIwL~PIf~s~-s~hGYdp~Dy~~Idp~~GT~---edfk~LV~aaH~~GIkVIlDvV~NH~~ 600 (759)
+-.-+.+.+..|++-|+|++-+-= +.. +.-.|.-.| .+....++- -|.+-+|++|++.||.+|.-+|.=--.
T Consensus 75 ~kk~~de~fk~ikdn~~Na~ViD~--Kdd~G~lty~s~d--~~~~~~~sv~~f~Di~~~iKkaKe~giY~IARiVvFKD~ 150 (400)
T COG1306 75 LKKRLDELFKLIKDNNINAFVIDV--KDDYGELTYPSSD--EINKYTKSVNKFKDIEPVIKKAKENGIYAIARIVVFKDT 150 (400)
T ss_pred ChhHHHHHHHHHHhCCCCEEEEEe--cCCCccEeccccc--hhhhhhhccccccccHHHHHHHHhcCeEEEEEEEEeeee
Confidence 445677888999999999987531 111 122344443 333333433 378889999999999999988853222
Q ss_pred ccccccCCCccccC-----CCCCCCCCcccCCCCCCCCCC-CccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcc
Q 004353 601 AHYQNQNGVWNIFG-----GRLNWDDRAVVADDPHFQGRG-NKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYD 674 (759)
Q Consensus 601 ~~~~~~~~~w~~~~-----~~~~w~~~~~~~~~~~f~~~g-~~~~~~~~~~lpdLn~~np~Vr~~i~d~l~~Wi~e~GVD 674 (759)
.-+ .|++|. +-.+|.. |...+ .. .....--++--++.+++|=+.+.+.-+ ++|+|
T Consensus 151 ~l~-----~~n~fk~av~~~gKpw~~---------~~ngaLrK----e~~~ehWVd~y~~~~WeYNvtIAKEa~-~fGfd 211 (400)
T COG1306 151 ILA-----KENPFKIAVYKDGKPWKA---------FTNGALRK----ESDGEHWVDAYDKNLWEYNVTIAKEAA-KFGFD 211 (400)
T ss_pred eEE-----eecCceEEEEcCCCcchh---------hhcccccc----cccceeeecccchhhhhhhHHHHHHHH-HcCcc
Confidence 111 111111 1112221 11000 00 000111133457889999998888888 89999
Q ss_pred EEEEeccC------------------ccc-HHHHHHHHHhC---CCcEEEEeecCCCCcccCccCcCchhhhHHHHHHHH
Q 004353 675 GWRLDFVR------------------GFW-GGYVKDYLEAT---EPYFAVGEYWDSLSYTYGEMDHNQDAHRQRIIDWIN 732 (759)
Q Consensus 675 GFRlD~ak------------------~f~-~~~~~~~~~~~---p~~~lvGE~w~~~~y~~g~m~Y~~d~~~~~i~~yl~ 732 (759)
-+.||.+. .|- .+.+..+.... =++.+-..++....|.--.|.-. .+.+.+.+|++
T Consensus 212 EiQFDYIRFP~dg~~l~~A~~~~n~~~m~~~~Al~sfL~yArE~l~vpIS~DIYG~nGw~~t~~~~G--Q~~e~ls~yVD 289 (400)
T COG1306 212 EIQFDYIRFPADGGGLDKALNYRNTDNMTKSEALQSFLHYAREELEVPISADIYGQNGWSSTDMALG--QFWEALSSYVD 289 (400)
T ss_pred ceeeeEEEccCCCCchhhhhcccccccCChHHHHHHHHHHHHHhcccceEEEeecccCccCCcchhh--hhHHHHHhhhh
Confidence 99999874 121 12222222211 23667777777666654444433 33667777776
Q ss_pred hh
Q 004353 733 AA 734 (759)
Q Consensus 733 ~~ 734 (759)
-.
T Consensus 290 vI 291 (400)
T COG1306 290 VI 291 (400)
T ss_pred hc
Confidence 54
No 151
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=40.67 E-value=51 Score=38.11 Aligned_cols=64 Identities=17% Similarity=0.233 Sum_probs=48.3
Q ss_pred HHhHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCE-EEeeeeeccccc
Q 004353 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK-ILGDVVLNHRCA 601 (759)
Q Consensus 530 ~ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIk-VIlDvV~NH~~~ 601 (759)
.+.|..|+++|++.|.|.. ...++.-...++ +-.+.++..+.++.+++.|+. |-+|+.+..-+.
T Consensus 152 ~e~l~~L~~~G~~rvsiGv-------QS~~~~vl~~l~-R~~~~~~~~~ai~~lr~~G~~~v~~dli~GlPgq 216 (453)
T PRK13347 152 AEMLQALAALGFNRASFGV-------QDFDPQVQKAIN-RIQPEEMVARAVELLRAAGFESINFDLIYGLPHQ 216 (453)
T ss_pred HHHHHHHHHcCCCEEEECC-------CCCCHHHHHHhC-CCCCHHHHHHHHHHHHhcCCCcEEEeEEEeCCCC
Confidence 5889999999999999875 222222222333 346788999999999999997 889999887664
No 152
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=40.31 E-value=51 Score=36.92 Aligned_cols=65 Identities=20% Similarity=0.181 Sum_probs=48.0
Q ss_pred HHhHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCE-EEeeeeecccccc
Q 004353 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK-ILGDVVLNHRCAH 602 (759)
Q Consensus 530 ~ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIk-VIlDvV~NH~~~~ 602 (759)
.++|+.|+++|++.|.+.. ...+..-...++ +-.+.++..+.++.++++|+. |-+|++++.-+..
T Consensus 103 ~e~l~~lk~~G~nrisiGv-------QS~~d~vL~~l~-R~~~~~~~~~ai~~lr~~G~~~v~~dlI~GlPgqt 168 (353)
T PRK05904 103 QSQINLLKKNKVNRISLGV-------QSMNNNILKQLN-RTHTIQDSKEAINLLHKNGIYNISCDFLYCLPILK 168 (353)
T ss_pred HHHHHHHHHcCCCEEEEec-------ccCCHHHHHHcC-CCCCHHHHHHHHHHHHHcCCCcEEEEEeecCCCCC
Confidence 5889999999999999863 112222222232 335788999999999999997 9999999887653
No 153
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=38.95 E-value=54 Score=37.90 Aligned_cols=65 Identities=12% Similarity=0.162 Sum_probs=47.6
Q ss_pred HHhHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCE-EEeeeeecccccc
Q 004353 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK-ILGDVVLNHRCAH 602 (759)
Q Consensus 530 ~ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIk-VIlDvV~NH~~~~ 602 (759)
.+.|..|+++|++.|.|.. ...+..-...++. -.+.++..+.++.+++.|++ |-+|+.++..+..
T Consensus 151 ~e~l~~lk~~G~~risiGv-------qS~~~~~l~~l~r-~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt 216 (455)
T TIGR00538 151 KDVIDALRDEGFNRLSFGV-------QDFNKEVQQAVNR-IQPEEMIFELMNHAREAGFTSINIDLIYGLPKQT 216 (455)
T ss_pred HHHHHHHHHcCCCEEEEcC-------CCCCHHHHHHhCC-CCCHHHHHHHHHHHHhcCCCcEEEeEEeeCCCCC
Confidence 5788999999999999874 1222222223333 36788899999999999996 7799998877653
No 154
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=38.46 E-value=3.7e+02 Score=29.44 Aligned_cols=113 Identities=11% Similarity=0.019 Sum_probs=64.6
Q ss_pred HHHHhcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCEEEeeeeeccccccccccCCCcccc
Q 004353 534 TELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIF 613 (759)
Q Consensus 534 dYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIkVIlDvV~NH~~~~~~~~~~~w~~~ 613 (759)
.+.++-|+++|-|.=+.........+- .. ..+.+...+..-|++++++|.+||+= +
T Consensus 19 ~~~~~~g~~~v~lAFi~~~~~~~~~w~-g~----~~~~~~~~~~~~i~~lk~~G~kViiS-------------------~ 74 (294)
T cd06543 19 TYAAATGVKAFTLAFIVASGGCKPAWG-GS----YPLDQGGWIKSDIAALRAAGGDVIVS-------------------F 74 (294)
T ss_pred HHHHHcCCCEEEEEEEEcCCCCcccCC-CC----CCcccchhHHHHHHHHHHcCCeEEEE-------------------e
Confidence 577788999999873322211100000 00 01124567888999999999999981 2
Q ss_pred CCCCCCCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCccEEEEeccCcc---------
Q 004353 614 GGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGF--------- 684 (759)
Q Consensus 614 ~~~~~w~~~~~~~~~~~f~~~g~~~~~~~~~~lpdLn~~np~Vr~~i~d~l~~Wi~e~GVDGFRlD~ak~f--------- 684 (759)
+| |... .+. .+..-++.+.+.+...++.||+||+-||-=..-
T Consensus 75 GG---~~g~-------~~~-------------------~~~~~~~~~~~a~~~~i~~y~~dgiDfDiE~~~~~d~~~~~~ 125 (294)
T cd06543 75 GG---ASGT-------PLA-------------------TSCTSADQLAAAYQKVIDAYGLTHLDFDIEGGALTDTAAIDR 125 (294)
T ss_pred cC---CCCC-------ccc-------------------cCcccHHHHHHHHHHHHHHhCCCeEEEeccCCccccchhHHH
Confidence 22 1110 000 023335566666666778999999999874321
Q ss_pred cHHHHHHHHHhCCCc
Q 004353 685 WGGYVKDYLEATEPY 699 (759)
Q Consensus 685 ~~~~~~~~~~~~p~~ 699 (759)
....++.++++.|+.
T Consensus 126 ~~~al~~Lq~~~p~l 140 (294)
T cd06543 126 RAQALALLQKEYPDL 140 (294)
T ss_pred HHHHHHHHHHHCCCc
Confidence 223456666666653
No 155
>PLN03236 4-alpha-glucanotransferase; Provisional
Probab=38.43 E-value=76 Score=39.19 Aligned_cols=54 Identities=20% Similarity=0.227 Sum_probs=45.5
Q ss_pred CCHHHHHHhHHHHHhcCCCEEEECCCCCCCC-----C-CCCCcccCCccCCCCCCHHHHH
Q 004353 524 RWYMELKEKATELSSLGFSVIWLPPPTESVS-----P-EGYMPRDLYNLSSRYGNIDELK 577 (759)
Q Consensus 524 g~l~GI~ekLdYLk~LGvtaIwL~PIf~s~s-----~-hGYdp~Dy~~Idp~~GT~edfk 577 (759)
|+|-.+.+-++.+++.|.+.|+|+|+..... . ..|.+.+-+.+||.|=+.+.|.
T Consensus 80 GDfgdL~~fvD~~a~~G~~~~QiLPL~~t~~~~~~~dSSPYsp~S~fAlNPlyIdle~L~ 139 (745)
T PLN03236 80 GDFGDLEALVDFAAEAGMSVVQLLPVNDTCVHGTFWDSYPYSSLSVHALHPLYLKLKELV 139 (745)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEECCCCcCCCCCCCCCCCCcCcccccccChHHcCHHHhh
Confidence 6887899999999999999999999987542 2 4899999999999888776553
No 156
>PRK01060 endonuclease IV; Provisional
Probab=38.20 E-value=66 Score=34.13 Aligned_cols=52 Identities=10% Similarity=0.119 Sum_probs=38.1
Q ss_pred HHHHHhHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCEE
Q 004353 527 MELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKI 590 (759)
Q Consensus 527 ~GI~ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIkV 590 (759)
.++.+.++.++++|+++|.|.+-- .+.+. +..-+.++++++-+.+.++||++
T Consensus 12 ~~~~~~l~~~~~~G~d~vEl~~~~----p~~~~--------~~~~~~~~~~~lk~~~~~~gl~~ 63 (281)
T PRK01060 12 GGLEGAVAEAAEIGANAFMIFTGN----PQQWK--------RKPLEELNIEAFKAACEKYGISP 63 (281)
T ss_pred CCHHHHHHHHHHcCCCEEEEECCC----CCCCc--------CCCCCHHHHHHHHHHHHHcCCCC
Confidence 358889999999999999986421 11111 11237888999999999999984
No 157
>KOG2499 consensus Beta-N-acetylhexosaminidase [Carbohydrate transport and metabolism]
Probab=37.72 E-value=1.3e+02 Score=35.25 Aligned_cols=30 Identities=17% Similarity=0.325 Sum_probs=27.1
Q ss_pred CHHHHHHHHHHHHHcCCEEEeee-eeccccc
Q 004353 572 NIDELKDVVNKFHDVGMKILGDV-VLNHRCA 601 (759)
Q Consensus 572 T~edfk~LV~aaH~~GIkVIlDv-V~NH~~~ 601 (759)
|.+|..++|+=|+-|||+||..+ ++.|++.
T Consensus 248 T~eDv~evV~yarlRGIRVlpEfD~PgHt~s 278 (542)
T KOG2499|consen 248 TREDVSEVVEYARLRGIRVLPEFDTPGHTGS 278 (542)
T ss_pred cHHHHHHHHHHHHhccceeeecccCCccccc
Confidence 68999999999999999999987 5788875
No 158
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=37.62 E-value=1.2e+02 Score=35.52 Aligned_cols=64 Identities=19% Similarity=0.276 Sum_probs=43.3
Q ss_pred HHHHHHhHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCEEEeeee
Q 004353 526 YMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVV 595 (759)
Q Consensus 526 l~GI~ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIkVIlDvV 595 (759)
+.-..+-++-+++||+++.-++=-+...-..|... . +.-...+=.++||++|+++||++|+.+.
T Consensus 70 Yhry~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~----~--~n~~~~~~Y~~~i~~l~~~gi~p~VtL~ 133 (474)
T PRK09852 70 YHRYKEDIALMAEMGFKVFRTSIAWSRLFPQGDEL----T--PNQQGIAFYRSVFEECKKYGIEPLVTLC 133 (474)
T ss_pred hhhhHHHHHHHHHcCCCeEEeeceeeeeeeCCCCC----C--CCHHHHHHHHHHHHHHHHcCCEEEEEee
Confidence 67888999999999999988874333221112100 0 1111234589999999999999998664
No 159
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=37.39 E-value=54 Score=31.48 Aligned_cols=65 Identities=11% Similarity=0.143 Sum_probs=48.0
Q ss_pred HHhHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCEEEeeeeeccccc
Q 004353 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 601 (759)
Q Consensus 530 ~ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIkVIlDvV~NH~~~ 601 (759)
.+.++.|+++|+..|+++- .+.+...+..+...-++.++..+.++.++++|+.|.+.+++..-..
T Consensus 88 ~~~~~~l~~~g~~~i~i~l-------e~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~g~~~~ 152 (204)
T cd01335 88 EELLKELKELGLDGVGVSL-------DSGDEEVADKIRGSGESFKERLEALKELREAGLGLSTTLLVGLGDE 152 (204)
T ss_pred HHHHHHHHhCCCceEEEEc-------ccCCHHHHHHHhcCCcCHHHHHHHHHHHHHcCCCceEEEEEecCCC
Confidence 5677888888999999873 2222222333334556789999999999999999999999877654
No 160
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=37.01 E-value=5.2e+02 Score=28.08 Aligned_cols=63 Identities=21% Similarity=0.196 Sum_probs=38.3
Q ss_pred hHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccCCCCC---CHHHHHHHHHHHHHcCCEEEeeeeecccccc
Q 004353 532 KATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYG---NIDELKDVVNKFHDVGMKILGDVVLNHRCAH 602 (759)
Q Consensus 532 kLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Idp~~G---T~edfk~LV~aaH~~GIkVIlDvV~NH~~~~ 602 (759)
.....+.=|+.-|..-...-++...+|- -.+.+- ..+.||+|++++|+.|-++++ -++|.|..
T Consensus 38 ~y~~ra~gg~glii~e~~~v~~~~~~~~------~~~~~~~~~~~~~~~~~~~~vh~~g~~~~~--Ql~h~G~~ 103 (327)
T cd02803 38 YYEERAKGGVGLIITEAAYVDPEGKGYP------GQLGIYDDEQIPGLRKLTEAVHAHGAKIFA--QLAHAGRQ 103 (327)
T ss_pred HHHHHhCcCCcEEEECcEEEcCcccCCC------CCcCcCCHHHHHHHHHHHHHHHhCCCHhhH--HhhCCCcC
Confidence 3333444578888766555444332211 112222 246899999999999999875 45788753
No 161
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=36.96 E-value=81 Score=35.30 Aligned_cols=77 Identities=12% Similarity=0.100 Sum_probs=49.4
Q ss_pred CHHHHHHhHHHHHhcCCCEEEECCC-----------CCC----CCCCCCCc----ccCCccCC--CCCCHHHHHHHHHHH
Q 004353 525 WYMELKEKATELSSLGFSVIWLPPP-----------TES----VSPEGYMP----RDLYNLSS--RYGNIDELKDVVNKF 583 (759)
Q Consensus 525 ~l~GI~ekLdYLk~LGvtaIwL~PI-----------f~s----~s~hGYdp----~Dy~~Idp--~~GT~edfk~LV~aa 583 (759)
..+.|.+.++.++.+++|.++|--. ++. .+..++.. .......+ .+=|.+|+++||+-|
T Consensus 16 ~~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~~~YT~~di~eiv~yA 95 (357)
T cd06563 16 PVDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYGGFYTQEEIREIVAYA 95 (357)
T ss_pred CHHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccCceECHHHHHHHHHHH
Confidence 3688899999999999999998421 110 00111110 00111111 122689999999999
Q ss_pred HHcCCEEEeee-eeccccc
Q 004353 584 HDVGMKILGDV-VLNHRCA 601 (759)
Q Consensus 584 H~~GIkVIlDv-V~NH~~~ 601 (759)
.++||.||-.+ ++.|+..
T Consensus 96 ~~rgI~VIPEID~PGH~~a 114 (357)
T cd06563 96 AERGITVIPEIDMPGHALA 114 (357)
T ss_pred HHcCCEEEEecCCchhHHH
Confidence 99999999887 5677764
No 162
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=36.91 E-value=65 Score=35.91 Aligned_cols=64 Identities=16% Similarity=0.225 Sum_probs=47.4
Q ss_pred HHhHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCE-EEeeeeeccccc
Q 004353 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK-ILGDVVLNHRCA 601 (759)
Q Consensus 530 ~ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIk-VIlDvV~NH~~~ 601 (759)
.++|..|+++||+.|-|.. ...+..-...+ .+-.+.++..+.++.+++.|+. |-+|++++-.+.
T Consensus 98 ~e~l~~l~~~GvnRiSiGv-------QS~~~~~L~~l-gR~~~~~~~~~ai~~lr~~g~~~v~iDli~GlPgq 162 (350)
T PRK08446 98 KAWLKGMKNLGVNRISFGV-------QSFNEDKLKFL-GRIHSQKQIIKAIENAKKAGFENISIDLIYDTPLD 162 (350)
T ss_pred HHHHHHHHHcCCCEEEEec-------ccCCHHHHHHc-CCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCCCC
Confidence 5889999999999999863 12222222333 3445688999999999999996 669999987664
No 163
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=36.53 E-value=61 Score=38.42 Aligned_cols=65 Identities=17% Similarity=0.219 Sum_probs=47.2
Q ss_pred HHhHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCEEEeeeeecccccc
Q 004353 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAH 602 (759)
Q Consensus 530 ~ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIkVIlDvV~NH~~~~ 602 (759)
.++|+.|+++|++.|.|..=.- + ..-...++ +--+.++..+.++.+++.|++|.+|+.++--+..
T Consensus 206 ~e~L~~L~~~G~~rVslGVQS~------~-d~VL~~in-Rght~~~v~~Ai~~lr~~G~~v~~~LM~GLPgqt 270 (522)
T TIGR01211 206 EEHIDRMLKLGATRVELGVQTI------Y-NDILERTK-RGHTVRDVVEATRLLRDAGLKVVYHIMPGLPGSS 270 (522)
T ss_pred HHHHHHHHHcCCCEEEEECccC------C-HHHHHHhC-CCCCHHHHHHHHHHHHHcCCeEEEEeecCCCCCC
Confidence 5789999999999999975111 1 11112222 2236788999999999999999999999977653
No 164
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=36.21 E-value=33 Score=37.38 Aligned_cols=58 Identities=19% Similarity=0.188 Sum_probs=35.1
Q ss_pred CHHHHHHhHHHHHh--cCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCEEEeeee
Q 004353 525 WYMELKEKATELSS--LGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVV 595 (759)
Q Consensus 525 ~l~GI~ekLdYLk~--LGvtaIwL~PIf~s~s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIkVIlDvV 595 (759)
+++.|.+.+..... -=+..|+|+-..+...+..| +.++++++.+-||++||+|.||..
T Consensus 107 ~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~-------------s~~el~ai~~~a~~~gl~lhmDGA 166 (290)
T PF01212_consen 107 TPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVY-------------SLEELRAISELAREHGLPLHMDGA 166 (290)
T ss_dssp -HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB----------------HHHHHHHHHHHHHHT-EEEEEET
T ss_pred CHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeC-------------CHHHHHHHHHHHHhCceEEEEehh
Confidence 35666665544333 22366777643332111111 478999999999999999999986
No 165
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=36.02 E-value=69 Score=37.05 Aligned_cols=65 Identities=18% Similarity=0.214 Sum_probs=48.4
Q ss_pred HHhHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCC-EEEeeeeecccccc
Q 004353 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGM-KILGDVVLNHRCAH 602 (759)
Q Consensus 530 ~ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GI-kVIlDvV~NH~~~~ 602 (759)
.+.|..|+++|++.|.|.. ...+..-...++ +..+.++..+.++.+++.|+ .|-+|+.++.-+..
T Consensus 151 ~e~l~~l~~aG~~risiGv-------qS~~~~~L~~l~-r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt 216 (453)
T PRK09249 151 LEMLDALRELGFNRLSLGV-------QDFDPEVQKAVN-RIQPFEFTFALVEAARELGFTSINIDLIYGLPKQT 216 (453)
T ss_pred HHHHHHHHHcCCCEEEECC-------CCCCHHHHHHhC-CCCCHHHHHHHHHHHHHcCCCcEEEEEEccCCCCC
Confidence 5888999999999999874 112222222333 34578899999999999999 89999998877753
No 166
>PF02446 Glyco_hydro_77: 4-alpha-glucanotransferase; InterPro: IPR003385 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The enzymes in this entry (2.4.1.25 from EC) belong to the glycoside hydrolase family 77 GH77 from CAZY, and transfer a segment of a (1,4)-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or (1,4)-alpha-D-glucan []. They belong to the disproportionating family of enzymes.; GO: 0004134 4-alpha-glucanotransferase activity, 0005975 carbohydrate metabolic process; PDB: 1TZ7_A 2X1I_A 2OWX_A 2OWW_A 1FP9_A 1CWY_A 1ESW_A 1FP8_A 2OWC_A 1X1N_A.
Probab=35.70 E-value=33 Score=40.24 Aligned_cols=54 Identities=19% Similarity=0.227 Sum_probs=33.5
Q ss_pred CCH-HHHHHhHHHHHhcCCCEEEECCCCCCCC--CCCCCcccCCccCCCCCCHHHHH
Q 004353 524 RWY-MELKEKATELSSLGFSVIWLPPPTESVS--PEGYMPRDLYNLSSRYGNIDELK 577 (759)
Q Consensus 524 g~l-~GI~ekLdYLk~LGvtaIwL~PIf~s~s--~hGYdp~Dy~~Idp~~GT~edfk 577 (759)
|+| ..+..-++.+++.|+..++|.|+++... ...|.+.+-+.+||-|=+.+.+.
T Consensus 15 GDfg~dl~~~~d~~~~~G~~i~qllpl~pt~~~~~sPY~p~S~~alNPlyI~l~~l~ 71 (496)
T PF02446_consen 15 GDFGDDLYQFIDWAAEAGQSIWQLLPLNPTGPGNSSPYSPSSRFALNPLYIDLEALP 71 (496)
T ss_dssp --SSHHHHHHHHHHHHCT--EEE----S-B-TTCTTTTSBS-SSS--GGGS-SHHHH
T ss_pred ecHHHHHHHHHHHHHHcCCCeeccccccCCCCCCCCCCCCCCCCcCChHHcCHHHhh
Confidence 678 8999999999999999999999997642 24899999999999887765443
No 167
>PRK14581 hmsF outer membrane N-deacetylase; Provisional
Probab=35.67 E-value=3.9e+02 Score=32.91 Aligned_cols=130 Identities=12% Similarity=0.095 Sum_probs=70.8
Q ss_pred HHHHHhHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHH-HHHHHHHHHHc-CCEEEeeeeecccccccc
Q 004353 527 MELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDE-LKDVVNKFHDV-GMKILGDVVLNHRCAHYQ 604 (759)
Q Consensus 527 ~GI~ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Idp~~GT~ed-fk~LV~aaH~~-GIkVIlDvV~NH~~~~~~ 604 (759)
+.+-.-++.|++||+++|||..+.+..++ |=. .-.|=++.++==.+| |-...=+++.| |++|+.=+-.=-..
T Consensus 334 ~nl~~l~~ri~~~~~~~VyLqafadp~gd-g~~-~~lYFpnr~lPmraDlfnrvawql~tR~~v~vyAWmpvl~~~---- 407 (672)
T PRK14581 334 ENLDKLVQRISDLRVTHVFLQAFSDPKGD-GNI-RQVYFPNRWIPMRQDLFNRVVWQLASRPDVEVYAWMPVLAFD---- 407 (672)
T ss_pred hhHHHHHHHHHhcCCCEEEEEeeeCCCCC-Cce-eeEEecCCcccHHHhhhhHHHHHHHhhhCceEEEeeehhhcc----
Confidence 45566678999999999999988765433 211 112333444444454 55554666654 99998633221000
Q ss_pred ccCCCccccCCCCCCCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCccEEEEe
Q 004353 605 NQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLD 679 (759)
Q Consensus 605 ~~~~~w~~~~~~~~w~~~~~~~~~~~f~~~g~~~~~~~~~~lpdLn~~np~Vr~~i~d~l~~Wi~e~GVDGFRlD 679 (759)
... ..+ ....+...+. ...-.-...+-|.--+|++|+.|.++...+...-.|||+-|.
T Consensus 408 --------------l~~-~~~-~~~~~~~~~~-~~~~~~~~y~rlspf~~~~~~~i~~iy~DLa~~~~~~Gilfh 465 (672)
T PRK14581 408 --------------MDP-SLP-RITRIDPKTG-KTSIDPDQYRRLSPFNPEVRQRIIDIYRDMAYSAPIDGIIYH 465 (672)
T ss_pred --------------CCc-ccc-hhhhcccccC-ccccCCCCccccCCCCHHHHHHHHHHHHHHHhcCCCCeEEec
Confidence 000 000 0000000000 000000122456667899999999999999855589998874
No 168
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=35.54 E-value=72 Score=36.99 Aligned_cols=64 Identities=17% Similarity=0.275 Sum_probs=46.0
Q ss_pred HHhHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCEEEeeeeeccccc
Q 004353 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 601 (759)
Q Consensus 530 ~ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIkVIlDvV~NH~~~ 601 (759)
.+.|+.+++.|++.|.+.. ++.+ ..-...++... +.++..+.++.+|++||.|.+++++..-+.
T Consensus 287 ~e~l~~l~~aG~~~v~iGi--ES~s-----~~~L~~~~K~~-~~~~~~~~i~~~~~~Gi~v~~~~IiGlPge 350 (472)
T TIGR03471 287 YETLKVMKENGLRLLLVGY--ESGD-----QQILKNIKKGL-TVEIARRFTRDCHKLGIKVHGTFILGLPGE 350 (472)
T ss_pred HHHHHHHHHcCCCEEEEcC--CCCC-----HHHHHHhcCCC-CHHHHHHHHHHHHHCCCeEEEEEEEeCCCC
Confidence 5678899999999999764 2221 11122222222 578899999999999999999999877554
No 169
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=35.50 E-value=71 Score=41.80 Aligned_cols=68 Identities=18% Similarity=0.030 Sum_probs=52.2
Q ss_pred ceeeeccccccc--CCCCCCHHHHHHhHHHHHhcCCCEEEECCCCCCC-CC----CCCCcccCCccCCCCCCHHH
Q 004353 508 FEILCQGFNWES--HKSGRWYMELKEKATELSSLGFSVIWLPPPTESV-SP----EGYMPRDLYNLSSRYGNIDE 575 (759)
Q Consensus 508 yev~~~~F~Wds--~~~Gg~l~GI~ekLdYLk~LGvtaIwL~PIf~s~-s~----hGYdp~Dy~~Idp~~GT~ed 575 (759)
..+.++-|.--+ +.+=|||..+.+-++.+++.|.+.|+|+|+.... .+ ..|.+.+-+.+||-|=+.+.
T Consensus 725 ~Gv~~~l~sLrs~~~~GiGDf~dl~~~vd~~a~~G~~~~qilPl~~~~~~~p~~~SPYsp~S~~alNplyI~~~~ 799 (1221)
T PRK14510 725 CGILMHLYSLRSQRPWGIGDFEELYALVDFLAEGGQSLWGVNPLHPLGLGDPERASPYQPSSRRAGNPLLISLDL 799 (1221)
T ss_pred eEEEEccccCCCCCCCCccCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCCCCCCccchhccccChhhcCHhh
Confidence 445666665444 2233789999999999999999999999998743 23 78999999999988776543
No 170
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=34.96 E-value=3.1e+02 Score=30.95 Aligned_cols=28 Identities=25% Similarity=0.267 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHcCCEEEeeeeecccccc
Q 004353 573 IDELKDVVNKFHDVGMKILGDVVLNHRCAH 602 (759)
Q Consensus 573 ~edfk~LV~aaH~~GIkVIlDvV~NH~~~~ 602 (759)
.+.|++|++++|++|-++++=+ +|.|..
T Consensus 82 i~~~~~l~~~vh~~G~~i~~QL--~H~G~~ 109 (370)
T cd02929 82 IRNLAAMTDAVHKHGALAGIEL--WHGGAH 109 (370)
T ss_pred HHHHHHHHHHHHHCCCeEEEec--ccCCCC
Confidence 4689999999999999998765 488863
No 171
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=34.53 E-value=1e+02 Score=28.44 Aligned_cols=59 Identities=25% Similarity=0.329 Sum_probs=38.9
Q ss_pred HHHHhcCCCEEEECCCCCCCC-CCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCEEEe
Q 004353 534 TELSSLGFSVIWLPPPTESVS-PEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILG 592 (759)
Q Consensus 534 dYLk~LGvtaIwL~PIf~s~s-~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIkVIl 592 (759)
..+..+|+..+.+.+...... .......|..-+=..=|...++.++++.||++|++||.
T Consensus 20 ~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~vi~iS~sG~t~~~~~~~~~a~~~g~~vi~ 79 (128)
T cd05014 20 ATLSSTGTPAFFLHPTEALHGDLGMVTPGDVVIAISNSGETDELLNLLPHLKRRGAPIIA 79 (128)
T ss_pred HHhhcCCCceEEcccchhhccccCcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEE
Confidence 455778999998866421110 01122333333335667889999999999999999987
No 172
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=34.43 E-value=3.9e+02 Score=29.59 Aligned_cols=28 Identities=18% Similarity=0.305 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHcCCEEEeeeeecccccc
Q 004353 573 IDELKDVVNKFHDVGMKILGDVVLNHRCAH 602 (759)
Q Consensus 573 ~edfk~LV~aaH~~GIkVIlDvV~NH~~~~ 602 (759)
.+.|+.|++++|++|-++++- ++|.|..
T Consensus 81 i~~~~~l~~~vh~~G~~~~~Q--l~h~G~~ 108 (338)
T cd04733 81 LEAFREWAAAAKANGALIWAQ--LNHPGRQ 108 (338)
T ss_pred HHHHHHHHHHHHhcCCEEEEE--ccCCCcC
Confidence 467999999999999998874 5687753
No 173
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=34.23 E-value=65 Score=36.68 Aligned_cols=64 Identities=17% Similarity=0.200 Sum_probs=47.2
Q ss_pred HHhHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCE-EEeeeeeccccc
Q 004353 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK-ILGDVVLNHRCA 601 (759)
Q Consensus 530 ~ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIk-VIlDvV~NH~~~ 601 (759)
.++|..|+++||+.|.|..= ..+..-...++ +--+.++..+.++.+++.|+. |-+|+.++.-+.
T Consensus 115 ~e~l~~l~~~GvnrislGvQ-------S~~d~~L~~l~-R~~~~~~~~~ai~~l~~~G~~~v~~dlI~GlPgq 179 (400)
T PRK07379 115 LEQLQGYRSLGVNRVSLGVQ-------AFQDELLALCG-RSHRVKDIFAAVDLIHQAGIENFSLDLISGLPHQ 179 (400)
T ss_pred HHHHHHHHHCCCCEEEEEcc-------cCCHHHHHHhC-CCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCC
Confidence 47889999999999998741 11222222332 334678899999999999998 889999998765
No 174
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=33.58 E-value=83 Score=37.99 Aligned_cols=59 Identities=12% Similarity=0.120 Sum_probs=41.8
Q ss_pred HHHhHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCEEEeeee
Q 004353 529 LKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVV 595 (759)
Q Consensus 529 I~ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIkVIlDvV 595 (759)
-.+.+...|++|+++|..--.+.. |--.+..| .|...-||..+|+.+|+.|+.|+|=+=
T Consensus 51 W~~~i~k~k~~Gln~IqtYVfWn~---Hep~~g~y-----~FsG~~DlvkFikl~~~~GLyv~LRiG 109 (649)
T KOG0496|consen 51 WPDLIKKAKAGGLNVIQTYVFWNL---HEPSPGKY-----DFSGRYDLVKFIKLIHKAGLYVILRIG 109 (649)
T ss_pred hHHHHHHHHhcCCceeeeeeeccc---ccCCCCcc-----cccchhHHHHHHHHHHHCCeEEEecCC
Confidence 356677889999999986433331 11111111 467888999999999999999999654
No 175
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=33.44 E-value=1.7e+02 Score=32.25 Aligned_cols=75 Identities=17% Similarity=0.261 Sum_probs=50.8
Q ss_pred CHHHHHHhHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccC-----CCCCCHHHHHHHHHHHHHcCCEEEeee-eecc
Q 004353 525 WYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLS-----SRYGNIDELKDVVNKFHDVGMKILGDV-VLNH 598 (759)
Q Consensus 525 ~l~GI~ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Id-----p~~GT~edfk~LV~aaH~~GIkVIlDv-V~NH 598 (759)
..+.|.+.++.++.+++|.+++-= .+. ..+++....|-.+- ..+=|.+|+++||+-|.++||.||-.+ ++.|
T Consensus 16 ~~~~ik~~Id~ma~~KlN~lh~Hl-tDd-~~~rle~~~~P~lt~~g~~~~~yT~~di~elv~yA~~rgI~vIPEId~PGH 93 (311)
T cd06570 16 PVAVIKRQLDAMASVKLNVFHWHL-TDD-QGFRIESKKYPKLQQKASDGLYYTQEQIREVVAYARDRGIRVVPEIDVPGH 93 (311)
T ss_pred CHHHHHHHHHHHHHhCCeEEEEEE-ecC-CCceeecCCCccccccCCCCCccCHHHHHHHHHHHHHcCCEEEEeecCccc
Confidence 478999999999999999877631 111 01222222221211 112378999999999999999999887 5788
Q ss_pred ccc
Q 004353 599 RCA 601 (759)
Q Consensus 599 ~~~ 601 (759)
+..
T Consensus 94 ~~a 96 (311)
T cd06570 94 ASA 96 (311)
T ss_pred hHH
Confidence 764
No 176
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=33.18 E-value=51 Score=33.45 Aligned_cols=75 Identities=15% Similarity=0.149 Sum_probs=50.0
Q ss_pred CHHHHHHhHHHHHhcCCCEEEECCCCCCCC---CCCCCcccCCccCCCCCC--------HHHHHHHHHHHHHcCCEEEee
Q 004353 525 WYMELKEKATELSSLGFSVIWLPPPTESVS---PEGYMPRDLYNLSSRYGN--------IDELKDVVNKFHDVGMKILGD 593 (759)
Q Consensus 525 ~l~GI~ekLdYLk~LGvtaIwL~PIf~s~s---~hGYdp~Dy~~Idp~~GT--------~edfk~LV~aaH~~GIkVIlD 593 (759)
....+.+.+..|+++||. |+|-=+-.+.. .-..-+.||-++|+.+-. ..-++.+++.||..|++||++
T Consensus 131 ~~~~~~~~i~~l~~~G~~-ialddfg~~~~~~~~l~~l~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~ 209 (241)
T smart00052 131 DDESAVATLQRLRELGVR-IALDDFGTGYSSLSYLKRLPVDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQKLGLQVVAE 209 (241)
T ss_pred ChHHHHHHHHHHHHCCCE-EEEeCCCCcHHHHHHHHhCCCCeEEECHHHHhhhccChhHHHHHHHHHHHHHHCCCeEEEe
Confidence 344566888999999987 45543221111 111224577788866532 245899999999999999999
Q ss_pred eeecccc
Q 004353 594 VVLNHRC 600 (759)
Q Consensus 594 vV~NH~~ 600 (759)
.|=+..-
T Consensus 210 gVe~~~~ 216 (241)
T smart00052 210 GVETPEQ 216 (241)
T ss_pred cCCCHHH
Confidence 9866543
No 177
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=33.14 E-value=2.8e+02 Score=30.71 Aligned_cols=69 Identities=17% Similarity=0.186 Sum_probs=39.6
Q ss_pred ecccccccCCCCCC--HHHHHHhHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCE
Q 004353 512 CQGFNWESHKSGRW--YMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK 589 (759)
Q Consensus 512 ~~~F~Wds~~~Gg~--l~GI~ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIk 589 (759)
+.+|+ |.- .+.=.+.+..+++.|.|+=...|=- ..+|+-.-.+.|--+ ..++|++|+++|++.||+
T Consensus 4 IEGFY------G~PWs~e~R~~l~~f~~~~kmN~YiYAPKd--Dpyhr~~Wre~Yp~~----el~~l~~L~~~a~~~~V~ 71 (306)
T PF07555_consen 4 IEGFY------GRPWSHEDRLDLIRFLGRYKMNTYIYAPKD--DPYHRSKWREPYPEE----ELAELKELADAAKANGVD 71 (306)
T ss_dssp EE-SS------SS---HHHHHHHHHHHHHTT--EEEE--TT---TTTTTTTTS---HH----HHHHHHHHHHHHHHTT-E
T ss_pred eeCcC------CCCCCHHHHHHHHHHHHHcCCceEEECCCC--ChHHHhhhcccCCHH----HHHHHHHHHHHHHHcCCE
Confidence 46777 533 5667777889999999987766621 123332222222221 357899999999999999
Q ss_pred EEe
Q 004353 590 ILG 592 (759)
Q Consensus 590 VIl 592 (759)
.+.
T Consensus 72 Fv~ 74 (306)
T PF07555_consen 72 FVY 74 (306)
T ss_dssp EEE
T ss_pred EEE
Confidence 886
No 178
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=32.94 E-value=7.7e+02 Score=27.94 Aligned_cols=66 Identities=24% Similarity=0.208 Sum_probs=38.9
Q ss_pred HHHhHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCC---HHHHHHHHHHHHHcCCEEEeeeeecccccc
Q 004353 529 LKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGN---IDELKDVVNKFHDVGMKILGDVVLNHRCAH 602 (759)
Q Consensus 529 I~ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Idp~~GT---~edfk~LV~aaH~~GIkVIlDvV~NH~~~~ 602 (759)
..+.....+.=|+..|...-....+...+|.- .+.+-+ .+.|+.+++++|++|=++++ -++|.|..
T Consensus 41 ~~~yy~~RA~gG~Glii~~~~~v~~~g~~~~~------~~~l~~d~~i~~~~~vt~avH~~G~~i~i--QL~H~Gr~ 109 (363)
T COG1902 41 LAEYYAERAKGGAGLIITEATAVDPGGRGYPG------QPGLWSDAQIPGLKRLTEAVHAHGAKIFI--QLWHAGRK 109 (363)
T ss_pred HHHHHHHHhcCCCCEEEEeeEeeCcccccCCC------CCccCChhHhHHHHHHHHHHHhcCCeEEE--EeccCccc
Confidence 33333444444577676652222222233321 122222 56899999999999999987 56899853
No 179
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=32.84 E-value=1.1e+02 Score=31.90 Aligned_cols=45 Identities=22% Similarity=0.289 Sum_probs=31.8
Q ss_pred HHHHhHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCEE
Q 004353 528 ELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKI 590 (759)
Q Consensus 528 GI~ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIkV 590 (759)
-+...+..|++||+..|=+.|+-- +-..+||+.+.++|-++||.+
T Consensus 136 ~vetAiaml~dmG~~SiKffPm~G------------------l~~leE~~avAkA~a~~g~~l 180 (218)
T PF07071_consen 136 PVETAIAMLKDMGGSSIKFFPMGG------------------LKHLEELKAVAKACARNGFTL 180 (218)
T ss_dssp EHHHHHHHHHHTT--EEEE---TT------------------TTTHHHHHHHHHHHHHCT-EE
T ss_pred cHHHHHHHHHHcCCCeeeEeecCC------------------cccHHHHHHHHHHHHHcCcee
Confidence 567889999999999999887531 224789999999999999876
No 180
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=32.66 E-value=6.2e+02 Score=28.50 Aligned_cols=28 Identities=25% Similarity=0.185 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHcCCEEEeeeeecccccc
Q 004353 573 IDELKDVVNKFHDVGMKILGDVVLNHRCAH 602 (759)
Q Consensus 573 ~edfk~LV~aaH~~GIkVIlDvV~NH~~~~ 602 (759)
.+.|+.|++++|++|-++++ -++|.|..
T Consensus 78 i~~~~~lad~vH~~Ga~i~~--QL~H~Gr~ 105 (362)
T PRK10605 78 IAAWKKITAGVHAEGGHIAV--QLWHTGRI 105 (362)
T ss_pred HHHHHHHHHHHHhCCCEEEE--eccCCCCC
Confidence 46799999999999999998 66798864
No 181
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=31.79 E-value=82 Score=35.43 Aligned_cols=65 Identities=17% Similarity=0.147 Sum_probs=47.1
Q ss_pred HHhHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCE-EEeeeeecccccc
Q 004353 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK-ILGDVVLNHRCAH 602 (759)
Q Consensus 530 ~ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIk-VIlDvV~NH~~~~ 602 (759)
.++|+.|+++||+.|.|..=. .+..-...++ +--+.++..+.++.+++.|+. |-+|++++.-+..
T Consensus 103 ~~~l~~l~~~G~nrislGvQS-------~~~~~L~~l~-R~~~~~~~~~ai~~~~~~g~~~v~~Dli~GlPgqt 168 (370)
T PRK06294 103 ESYIRALALTGINRISIGVQT-------FDDPLLKLLG-RTHSSSKAIDAVQECSEHGFSNLSIDLIYGLPTQS 168 (370)
T ss_pred HHHHHHHHHCCCCEEEEcccc-------CCHHHHHHcC-CCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCC
Confidence 578999999999999987411 1122222333 223677888999999999996 8999999987753
No 182
>PLN02801 beta-amylase
Probab=31.59 E-value=1.3e+02 Score=35.45 Aligned_cols=64 Identities=16% Similarity=0.182 Sum_probs=49.2
Q ss_pred CHHHHHHhHHHHHhcCCCEEEECCC---CCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCEEEeeeeeccccc
Q 004353 525 WYMELKEKATELSSLGFSVIWLPPP---TESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 601 (759)
Q Consensus 525 ~l~GI~ekLdYLk~LGvtaIwL~PI---f~s~s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIkVIlDvV~NH~~~ 601 (759)
.-+++...|..||.+||++|-+--- .+..+...|+ ....++|++-++++|+||..=+-|.-+|.
T Consensus 35 ~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~Yd-------------WsgY~~l~~mvr~~GLKlq~vmSFHqCGG 101 (517)
T PLN02801 35 DEEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYD-------------WSAYRSLFELVQSFGLKIQAIMSFHQCGG 101 (517)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccC-------------cHHHHHHHHHHHHcCCeEEEEEEecccCC
Confidence 3578999999999999999987432 2333344444 34578899999999999999888887765
No 183
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=31.53 E-value=81 Score=35.36 Aligned_cols=65 Identities=20% Similarity=0.229 Sum_probs=48.1
Q ss_pred HHhHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCE-EEeeeeecccccc
Q 004353 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK-ILGDVVLNHRCAH 602 (759)
Q Consensus 530 ~ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIk-VIlDvV~NH~~~~ 602 (759)
.+.+..|+++|++.|.+.. ...++.-+..+. +-.+.++..+.++.+++.|+. |-+|+.++.-+..
T Consensus 100 ~e~l~~l~~~G~~rvsiGv-------qS~~~~~l~~l~-r~~~~~~~~~~i~~l~~~g~~~v~~dli~GlPgqt 165 (377)
T PRK08599 100 KEKLQVLKDSGVNRISLGV-------QTFNDELLKKIG-RTHNEEDVYEAIANAKKAGFDNISIDLIYALPGQT 165 (377)
T ss_pred HHHHHHHHHcCCCEEEEec-------ccCCHHHHHHcC-CCCCHHHHHHHHHHHHHcCCCcEEEeeecCCCCCC
Confidence 4788999999999999874 122222222333 345788999999999999997 6799999887653
No 184
>PLN02803 beta-amylase
Probab=31.06 E-value=1.3e+02 Score=35.65 Aligned_cols=64 Identities=14% Similarity=0.169 Sum_probs=49.0
Q ss_pred HHHHHHhHHHHHhcCCCEEEECCC---CCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCEEEeeeeecccccc
Q 004353 526 YMELKEKATELSSLGFSVIWLPPP---TESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAH 602 (759)
Q Consensus 526 l~GI~ekLdYLk~LGvtaIwL~PI---f~s~s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIkVIlDvV~NH~~~~ 602 (759)
-+++...|..||.+||++|-+--. .+..+...|+ ..-.++|++.+++.|+||..=+-|.-+|..
T Consensus 106 ~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~Yd-------------WsgY~~l~~mvr~~GLKlq~vmSFHqCGGN 172 (548)
T PLN02803 106 PRAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYN-------------WEGYAELVQMVQKHGLKLQVVMSFHQCGGN 172 (548)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCC-------------cHHHHHHHHHHHHcCCeEEEEEEecccCCC
Confidence 388999999999999999987432 2333344444 345788999999999999998888877653
No 185
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=30.67 E-value=1.3e+02 Score=33.83 Aligned_cols=55 Identities=15% Similarity=0.206 Sum_probs=36.3
Q ss_pred HHhHHHHHhcCCCEEEECCC-CCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCEEEeeeee
Q 004353 530 KEKATELSSLGFSVIWLPPP-TESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVL 596 (759)
Q Consensus 530 ~ekLdYLk~LGvtaIwL~PI-f~s~s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIkVIlDvV~ 596 (759)
.+++..+-+-|+++||+.=- +- ..++. .+| +.++|+++|+-||++|.|+++=+-.
T Consensus 16 l~~l~~ai~~GADaVY~G~~~~~---~R~~a-~nf--------s~~~l~e~i~~ah~~gkk~~V~~N~ 71 (347)
T COG0826 16 LEDLKAAIAAGADAVYIGEKEFG---LRRRA-LNF--------SVEDLAEAVELAHSAGKKVYVAVNT 71 (347)
T ss_pred HHHHHHHHHcCCCEEEeCCcccc---ccccc-ccC--------CHHHHHHHHHHHHHcCCeEEEEecc
Confidence 34455555678999999733 21 12222 222 4677999999999999998874443
No 186
>PTZ00445 p36-lilke protein; Provisional
Probab=30.53 E-value=1.1e+02 Score=32.26 Aligned_cols=62 Identities=19% Similarity=0.186 Sum_probs=40.1
Q ss_pred HHHHHhHHHHHhcCCCEEEECCCCCCC----CCCCCCcccCCccCCCCCC--HHHHHHHHHHHHHcCCEEEe
Q 004353 527 MELKEKATELSSLGFSVIWLPPPTESV----SPEGYMPRDLYNLSSRYGN--IDELKDVVNKFHDVGMKILG 592 (759)
Q Consensus 527 ~GI~ekLdYLk~LGvtaIwL~PIf~s~----s~hGYdp~Dy~~Idp~~GT--~edfk~LV~aaH~~GIkVIl 592 (759)
+.+..-.+.|++.||.+|-+= +++. -..||+-.+ +-+..+++ ..+|+.++++++++||+|++
T Consensus 29 ~~~~~~v~~L~~~GIk~Va~D--~DnTlI~~HsgG~~~~~--~~~~~~~~~~tpefk~~~~~l~~~~I~v~V 96 (219)
T PTZ00445 29 ESADKFVDLLNECGIKVIASD--FDLTMITKHSGGYIDPD--NDDIRVLTSVTPDFKILGKRLKNSNIKISV 96 (219)
T ss_pred HHHHHHHHHHHHcCCeEEEec--chhhhhhhhcccccCCC--cchhhhhccCCHHHHHHHHHHHHCCCeEEE
Confidence 344444578999999999751 1111 123555433 33344443 35799999999999999986
No 187
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=30.43 E-value=1.2e+02 Score=31.94 Aligned_cols=52 Identities=19% Similarity=0.330 Sum_probs=37.1
Q ss_pred HHHHhHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCEEEe
Q 004353 528 ELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILG 592 (759)
Q Consensus 528 GI~ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIkVIl 592 (759)
-+.+.|+.++++|+++|-|..- ..+-|.+ .+ +..++++|.+++.++||+|..
T Consensus 14 ~l~~~l~~~~~~G~~~vEl~~~----~~~~~~~--------~~-~~~~~~~l~~~~~~~gl~v~s 65 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEIWGG----RPHAFAP--------DL-KAGGIKQIKALAQTYQMPIIG 65 (275)
T ss_pred CHHHHHHHHHHcCCCEEEEccC----Ccccccc--------cc-CchHHHHHHHHHHHcCCeEEE
Confidence 4889999999999999998421 0111211 11 345789999999999999854
No 188
>COG3669 Alpha-L-fucosidase [Carbohydrate transport and metabolism]
Probab=30.34 E-value=4.9e+02 Score=30.01 Aligned_cols=67 Identities=15% Similarity=0.143 Sum_probs=49.4
Q ss_pred HhHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccC-CCCCCH-HHHHHHHHHHHHcCCEEEeeeeecccccc
Q 004353 531 EKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLS-SRYGNI-DELKDVVNKFHDVGMKILGDVVLNHRCAH 602 (759)
Q Consensus 531 ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Id-p~~GT~-edfk~LV~aaH~~GIkVIlDvV~NH~~~~ 602 (759)
+-..-+|+.|...|- |+.+++.+---++++|..-+ +..|.. +-+.+|.+++.++||+. .|.+|-+.+
T Consensus 58 eWar~fK~aGAKyvi--lvakHHDGFaLw~t~ys~wnsvk~GpKrDlvgela~Avr~qGL~F---Gvy~s~a~h 126 (430)
T COG3669 58 EWARLFKEAGAKYVI--LVAKHHDGFALWPTDYSVWNSVKRGPKRDLVGELAKAVREQGLRF---GVYLSGAWH 126 (430)
T ss_pred HHHHHHHHcCCcEEE--EeeeecCCeeecccccccccccccCCcccHHHHHHHHHHHcCCee---eEeeccCcc
Confidence 345668889888655 77788776555666776665 567775 45789999999999986 678887755
No 189
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=29.67 E-value=1.1e+02 Score=34.68 Aligned_cols=70 Identities=14% Similarity=0.188 Sum_probs=39.8
Q ss_pred CCCHHHHHHhHHHHHhcCCCEEEECCCCCCC------CCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCEEEeeeee
Q 004353 523 GRWYMELKEKATELSSLGFSVIWLPPPTESV------SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVL 596 (759)
Q Consensus 523 Gg~l~GI~ekLdYLk~LGvtaIwL~PIf~s~------s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIkVIlDvV~ 596 (759)
||++.-+.. -|+.+||++.|+-|.-... .+-+. .-.-.|..-=++.-|+..+.+-||++|+-+|+|-.+
T Consensus 112 GGT~~lf~~---tl~~~Gi~v~fvd~~d~~~~~~aI~~nTka--vf~EtigNP~~~v~Die~ia~iAh~~gvpliVDNT~ 186 (426)
T COG2873 112 GGTYNLFSH---TLKRLGIEVRFVDPDDPENFEAAIDENTKA--VFAETIGNPGLDVLDIEAIAEIAHRHGVPLIVDNTF 186 (426)
T ss_pred CchHHHHHH---HHHhcCcEEEEeCCCCHHHHHHHhCcccce--EEEEeccCCCccccCHHHHHHHHHHcCCcEEEecCC
Confidence 666533222 2699999999997754100 00000 000011111122346999999999999999999554
Q ss_pred c
Q 004353 597 N 597 (759)
Q Consensus 597 N 597 (759)
-
T Consensus 187 a 187 (426)
T COG2873 187 A 187 (426)
T ss_pred C
Confidence 3
No 190
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=29.28 E-value=1.1e+02 Score=29.80 Aligned_cols=63 Identities=17% Similarity=0.281 Sum_probs=44.8
Q ss_pred HHhHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcC-CEEEeeeeecccc
Q 004353 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVG-MKILGDVVLNHRC 600 (759)
Q Consensus 530 ~ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~G-IkVIlDvV~NH~~ 600 (759)
.+.++.|+++|++.|.++.=.- +.+-|+ .+.+ -++.+++.+.++.++++| +.|.+.+++++.+
T Consensus 100 ~~~~~~l~~~~~~~i~isl~~~--~~~~~~-----~~~~-~~~~~~~~~~i~~~~~~g~~~v~~~~~~g~~~ 163 (216)
T smart00729 100 EELLEALKEAGVNRVSLGVQSG--SDEVLK-----AINR-GHTVEDVLEAVEKLREAGPIKVSTDLIVGLPG 163 (216)
T ss_pred HHHHHHHHHcCCCeEEEecccC--CHHHHH-----HhcC-CCCHHHHHHHHHHHHHhCCcceEEeEEecCCC
Confidence 5678899999999999875221 111111 1222 245699999999999999 8999999988764
No 191
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=28.95 E-value=61 Score=37.05 Aligned_cols=66 Identities=15% Similarity=0.199 Sum_probs=46.4
Q ss_pred CCCHHHHHHhHHHHHhcCCCEEEECCCC---CCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCEEEeeeeeccc
Q 004353 523 GRWYMELKEKATELSSLGFSVIWLPPPT---ESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHR 599 (759)
Q Consensus 523 Gg~l~GI~ekLdYLk~LGvtaIwL~PIf---~s~s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIkVIlDvV~NH~ 599 (759)
.++++.+...|..||.+||++|-+.--+ +..+...|+ ..-.++|.+.++++|+||..=+-|.-+
T Consensus 12 ~~~~~~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~yd-------------Ws~Y~~l~~~vr~~GLk~~~vmsfH~c 78 (402)
T PF01373_consen 12 DNDWNALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYD-------------WSGYRELFEMVRDAGLKLQVVMSFHQC 78 (402)
T ss_dssp TSECHHHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB----------------HHHHHHHHHHHHTT-EEEEEEE-S-B
T ss_pred CCcHHHHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccC-------------cHHHHHHHHHHHHcCCeEEEEEeeecC
Confidence 3457799999999999999999874322 333333343 456889999999999999998888777
Q ss_pred cc
Q 004353 600 CA 601 (759)
Q Consensus 600 ~~ 601 (759)
+.
T Consensus 79 Gg 80 (402)
T PF01373_consen 79 GG 80 (402)
T ss_dssp SS
T ss_pred CC
Confidence 64
No 192
>PLN02905 beta-amylase
Probab=28.93 E-value=1.5e+02 Score=35.75 Aligned_cols=65 Identities=12% Similarity=0.068 Sum_probs=49.9
Q ss_pred CHHHHHHhHHHHHhcCCCEEEECCCC---CCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCEEEeeeeeccccc
Q 004353 525 WYMELKEKATELSSLGFSVIWLPPPT---ESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 601 (759)
Q Consensus 525 ~l~GI~ekLdYLk~LGvtaIwL~PIf---~s~s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIkVIlDvV~NH~~~ 601 (759)
+.+++...|..||.+||++|-+--.+ +..+..-|+ ..-.++|++.+++.|+||..=+-|.-+|.
T Consensus 284 ~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~Yd-------------WsgY~~L~~mvr~~GLKlqvVMSFHqCGG 350 (702)
T PLN02905 284 DPDGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYN-------------WNGYKRLFQMVRELKLKLQVVMSFHECGG 350 (702)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCC-------------cHHHHHHHHHHHHcCCeEEEEEEecccCC
Confidence 47899999999999999999875322 333344444 34578899999999999999888887765
Q ss_pred c
Q 004353 602 H 602 (759)
Q Consensus 602 ~ 602 (759)
.
T Consensus 351 N 351 (702)
T PLN02905 351 N 351 (702)
T ss_pred C
Confidence 3
No 193
>PLN02389 biotin synthase
Probab=28.57 E-value=1.4e+02 Score=33.84 Aligned_cols=63 Identities=13% Similarity=0.202 Sum_probs=46.7
Q ss_pred HHHhHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCEEEeeeeeccccc
Q 004353 529 LKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 601 (759)
Q Consensus 529 I~ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIkVIlDvV~NH~~~ 601 (759)
..+.+..|++.|++.+.+. ++. .+.-|..+-+. .+.++-.+.++.||+.||+|..=+++.| +.
T Consensus 177 ~~E~l~~LkeAGld~~~~~--LeT------s~~~y~~i~~~-~s~e~rl~ti~~a~~~Gi~v~sg~IiGl-gE 239 (379)
T PLN02389 177 EKEQAAQLKEAGLTAYNHN--LDT------SREYYPNVITT-RSYDDRLETLEAVREAGISVCSGGIIGL-GE 239 (379)
T ss_pred CHHHHHHHHHcCCCEEEee--ecC------ChHHhCCcCCC-CCHHHHHHHHHHHHHcCCeEeEEEEECC-CC
Confidence 3577889999999998662 222 12234444432 2789999999999999999999999998 54
No 194
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=28.16 E-value=1.2e+02 Score=32.20 Aligned_cols=53 Identities=17% Similarity=0.172 Sum_probs=38.2
Q ss_pred HHHHhHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCEEE
Q 004353 528 ELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKIL 591 (759)
Q Consensus 528 GI~ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIkVI 591 (759)
.+.+.|+.++++|+++|-|.+-.. + ..+++.--+.+++++|.+.+.++||+|.
T Consensus 17 ~~~e~l~~~~~~G~~~VEl~~~~~----~-------~~~~~~~~~~~~~~~~~~~l~~~gl~i~ 69 (279)
T TIGR00542 17 CWLERLQLAKTCGFDFVEMSVDET----D-------DRLSRLDWSREQRLALVNAIIETGVRIP 69 (279)
T ss_pred CHHHHHHHHHHcCCCEEEEecCCc----c-------chhhccCCCHHHHHHHHHHHHHcCCCce
Confidence 678899999999999999954210 0 0111111257889999999999999985
No 195
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=28.15 E-value=1.1e+02 Score=32.66 Aligned_cols=54 Identities=19% Similarity=0.318 Sum_probs=37.4
Q ss_pred HhHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCEEEeeeeecc
Q 004353 531 EKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNH 598 (759)
Q Consensus 531 ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIkVIlDvV~NH 598 (759)
+.+..+..-.+..|++.++.. ..|+. =+.+++++|++.||++|+.||+|-++..
T Consensus 123 ~~~~~~~~~~~~~v~i~~~~~---~tG~~-----------~~~~~l~~l~~~~~~~~~~~ivD~a~~~ 176 (350)
T cd00609 123 ELLEAAKTPKTKLLYLNNPNN---PTGAV-----------LSEEELEELAELAKKHGILIISDEAYAE 176 (350)
T ss_pred HHHHhhcCccceEEEEECCCC---CCCcc-----------cCHHHHHHHHHHHHhCCeEEEEecchhh
Confidence 344444556678888876221 12221 1468899999999999999999998654
No 196
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair]
Probab=28.11 E-value=1.3e+02 Score=33.18 Aligned_cols=59 Identities=22% Similarity=0.258 Sum_probs=47.8
Q ss_pred CHHHHHHhHHHHHhcCC-CEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCEEEeeeeeccccc
Q 004353 525 WYMELKEKATELSSLGF-SVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 601 (759)
Q Consensus 525 ~l~GI~ekLdYLk~LGv-taIwL~PIf~s~s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIkVIlDvV~NH~~~ 601 (759)
..+.=.+.|..|++.|+ ++|.+.||..+. +++++.+++.+|.+.|...+.+.++.=...
T Consensus 167 sp~~Ri~al~~l~eaGi~~~v~v~PIiP~~------------------~d~e~e~~l~~~~~ag~~~v~~~~l~~~~~ 226 (297)
T COG1533 167 SPEERLEALKELSEAGIPVGLFVAPIIPGL------------------NDEELERILEAAAEAGARVVVYGTLRLRLD 226 (297)
T ss_pred CHHHHHHHHHHHHHCCCeEEEEEecccCCC------------------ChHHHHHHHHHHHHcCCCeeEeeeeeccHH
Confidence 35667778889999999 788999999732 348999999999999999999887755443
No 197
>PRK13561 putative diguanylate cyclase; Provisional
Probab=27.96 E-value=87 Score=37.57 Aligned_cols=75 Identities=8% Similarity=0.063 Sum_probs=51.0
Q ss_pred CCHHHHHHhHHHHHhcCCCEEEECCCCCCCCCC------CCCcccCCccCCCC-----CCHHHHHHHHHHHHHcCCEEEe
Q 004353 524 RWYMELKEKATELSSLGFSVIWLPPPTESVSPE------GYMPRDLYNLSSRY-----GNIDELKDVVNKFHDVGMKILG 592 (759)
Q Consensus 524 g~l~GI~ekLdYLk~LGvtaIwL~PIf~s~s~h------GYdp~Dy~~Idp~~-----GT~edfk~LV~aaH~~GIkVIl 592 (759)
.+...+...+..|+++||.-.. -=+-.+.++- ..-|.||-+||..| .+..-++.+++.||..||+||.
T Consensus 531 ~~~~~~~~~~~~l~~~G~~i~l-ddfG~g~ssl~~L~~l~~l~~d~lKiD~s~i~~i~~~~~~v~~i~~~a~~l~i~viA 609 (651)
T PRK13561 531 DDPHAAVAILRPLRNAGVRVAL-DDFGMGYAGLRQLQHMKSLPIDVLKIDKMFVDGLPEDDSMVAAIIMLAQSLNLQVIA 609 (651)
T ss_pred cCHHHHHHHHHHHHHCCCEEEE-ECCCCCcccHHHHhhcCCCCCcEEEECHHHHhcCCCCHHHHHHHHHHHHHCCCcEEE
Confidence 3567888999999999997543 1110001111 12367888888544 2345699999999999999999
Q ss_pred eeeeccc
Q 004353 593 DVVLNHR 599 (759)
Q Consensus 593 DvV~NH~ 599 (759)
..|=+.-
T Consensus 610 egVE~~~ 616 (651)
T PRK13561 610 EGVETEA 616 (651)
T ss_pred ecCCCHH
Confidence 9885543
No 198
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=27.53 E-value=91 Score=30.52 Aligned_cols=52 Identities=21% Similarity=0.205 Sum_probs=37.4
Q ss_pred HHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCEEEeeeeec
Q 004353 533 ATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLN 597 (759)
Q Consensus 533 LdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIkVIlDvV~N 597 (759)
.--|+.||.....+. .|+..++...-..+.+.++++.+++.|++|++|...-
T Consensus 43 a~~l~~LG~~~~~~~-------------~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~D~~~~ 94 (196)
T cd00287 43 AVALARLGVSVTLVG-------------ADAVVISGLSPAPEAVLDALEEARRRGVPVVLDPGPR 94 (196)
T ss_pred HHHHHHCCCcEEEEE-------------ccEEEEecccCcHHHHHHHHHHHHHcCCeEEEeCCcc
Confidence 345677898887777 3444444332224778999999999999999999754
No 199
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=27.50 E-value=87 Score=34.12 Aligned_cols=65 Identities=18% Similarity=0.178 Sum_probs=47.8
Q ss_pred CCCHHHHHHhHHHHHhcCC--CEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCEEEeeeeecccc
Q 004353 523 GRWYMELKEKATELSSLGF--SVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRC 600 (759)
Q Consensus 523 Gg~l~GI~ekLdYLk~LGv--taIwL~PIf~s~s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIkVIlDvV~NH~~ 600 (759)
+-++..+.+.++..+.-++ ..|+++.+. ++....=+.++++++++.|.++|+.||.|-++.-..
T Consensus 129 ~~d~~~l~~~l~~~~~~~~~~~~v~~~~p~--------------nPtG~~~~~~~l~~l~~~~~~~~~~ii~De~y~~~~ 194 (363)
T PF00155_consen 129 HLDPEALEEALDELPSKGPRPKAVLICNPN--------------NPTGSVLSLEELRELAELAREYNIIIIVDEAYSDLI 194 (363)
T ss_dssp EETHHHHHHHHHTSHTTTETEEEEEEESSB--------------TTTTBB--HHHHHHHHHHHHHTTSEEEEEETTTTGB
T ss_pred cccccccccccccccccccccceeeecccc--------------cccccccccccccchhhhhcccccceeeeeceeccc
Confidence 5678899999988877764 777775432 122222268999999999999999999999977655
Q ss_pred c
Q 004353 601 A 601 (759)
Q Consensus 601 ~ 601 (759)
.
T Consensus 195 ~ 195 (363)
T PF00155_consen 195 F 195 (363)
T ss_dssp S
T ss_pred c
Confidence 3
No 200
>PLN02705 beta-amylase
Probab=27.34 E-value=1.6e+02 Score=35.59 Aligned_cols=64 Identities=11% Similarity=0.142 Sum_probs=49.0
Q ss_pred CHHHHHHhHHHHHhcCCCEEEECCCC---CCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCEEEeeeeeccccc
Q 004353 525 WYMELKEKATELSSLGFSVIWLPPPT---ESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 601 (759)
Q Consensus 525 ~l~GI~ekLdYLk~LGvtaIwL~PIf---~s~s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIkVIlDvV~NH~~~ 601 (759)
.-++|...|..||.+||++|-+--.+ +..+...|+ ..-.++|++.+++.||||..=+-|.-+|.
T Consensus 266 ~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~Yd-------------WsgY~~L~~mvr~~GLKlqvVmSFHqCGG 332 (681)
T PLN02705 266 DPEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYV-------------WSGYRELFNIIREFKLKLQVVMAFHEYGG 332 (681)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCC-------------cHHHHHHHHHHHHcCCeEEEEEEeeccCC
Confidence 35789999999999999999875322 333344444 34578899999999999999888887765
No 201
>PLN00197 beta-amylase; Provisional
Probab=26.99 E-value=1.7e+02 Score=34.86 Aligned_cols=64 Identities=17% Similarity=0.188 Sum_probs=48.9
Q ss_pred HHHHHHhHHHHHhcCCCEEEECCC---CCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCEEEeeeeecccccc
Q 004353 526 YMELKEKATELSSLGFSVIWLPPP---TESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAH 602 (759)
Q Consensus 526 l~GI~ekLdYLk~LGvtaIwL~PI---f~s~s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIkVIlDvV~NH~~~~ 602 (759)
-+++...|..||.+||++|-+--. .+..+...|+ ..-.++|++-+++.|+||..=+-|.-+|..
T Consensus 126 ~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~Yd-------------WsgY~~L~~mvr~~GLKlq~VmSFHqCGGN 192 (573)
T PLN00197 126 RKAMKASLQALKSAGVEGIMMDVWWGLVERESPGVYN-------------WGGYNELLEMAKRHGLKVQAVMSFHQCGGN 192 (573)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCC-------------cHHHHHHHHHHHHcCCeEEEEEEecccCCC
Confidence 568999999999999999987432 2333444444 345788999999999999998888877653
No 202
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=26.66 E-value=1.5e+02 Score=30.40 Aligned_cols=48 Identities=19% Similarity=0.183 Sum_probs=40.2
Q ss_pred CCCHHHHHHhHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCEEEe
Q 004353 523 GRWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILG 592 (759)
Q Consensus 523 Gg~l~GI~ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIkVIl 592 (759)
..+-+...+.++.+.+.|+++|-+.|+... .+..++++|.++||+||+
T Consensus 38 ~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~~----------------------~~~~~l~~~~~~gIpvv~ 85 (257)
T PF13407_consen 38 QNDPEEQIEQIEQAISQGVDGIIVSPVDPD----------------------SLAPFLEKAKAAGIPVVT 85 (257)
T ss_dssp TTTHHHHHHHHHHHHHTTESEEEEESSSTT----------------------TTHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHHHHHHhcCCEEEecCCCHH----------------------HHHHHHHHHhhcCceEEE
Confidence 456788889999999999999999986542 256888999999999998
No 203
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=26.63 E-value=1.3e+02 Score=31.83 Aligned_cols=50 Identities=12% Similarity=0.161 Sum_probs=40.5
Q ss_pred HHHHhHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCEEEeeeeeccc
Q 004353 528 ELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHR 599 (759)
Q Consensus 528 GI~ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIkVIlDvV~NH~ 599 (759)
|+..-++.+++.|++.|-++-. + .+++..+++.++++||+.++=+.++-.
T Consensus 92 G~~~fi~~~~~aG~~giiipDl-------------------~---~ee~~~~~~~~~~~g~~~i~~i~P~T~ 141 (242)
T cd04724 92 GLERFLRDAKEAGVDGLIIPDL-------------------P---PEEAEEFREAAKEYGLDLIFLVAPTTP 141 (242)
T ss_pred CHHHHHHHHHHCCCcEEEECCC-------------------C---HHHHHHHHHHHHHcCCcEEEEeCCCCC
Confidence 6788899999999999988621 1 258999999999999999986666543
No 204
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=26.05 E-value=1.7e+02 Score=32.11 Aligned_cols=60 Identities=13% Similarity=0.299 Sum_probs=44.4
Q ss_pred HHhHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCE-EEeeeee
Q 004353 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK-ILGDVVL 596 (759)
Q Consensus 530 ~ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIk-VIlDvV~ 596 (759)
.+.++.|++.|++.|.++- ++.++.-|..+...-|+.++..+-++++.+.|+. |-+-+|+
T Consensus 102 ~~~~~~L~~~gl~~v~ISl-------d~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~G~~~v~in~vv 162 (334)
T TIGR02666 102 ARHAKDLKEAGLKRVNVSL-------DSLDPERFAKITRRGGRLEQVLAGIDAALAAGLEPVKLNTVV 162 (334)
T ss_pred HHHHHHHHHcCCCeEEEec-------ccCCHHHhheeCCCCCCHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence 4578899999999998774 3444444445544456888899999999999997 7776665
No 205
>PLN02808 alpha-galactosidase
Probab=25.95 E-value=1.2e+02 Score=34.72 Aligned_cols=62 Identities=19% Similarity=0.265 Sum_probs=38.9
Q ss_pred CCCHHHHHHhHHH-----HHhcCCCEEEECCCCCCC--CCCCCCcccCCccCC-CCCCHHHHHHHHHHHHHcCCEEE
Q 004353 523 GRWYMELKEKATE-----LSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKIL 591 (759)
Q Consensus 523 Gg~l~GI~ekLdY-----Lk~LGvtaIwL~PIf~s~--s~hGYdp~Dy~~Idp-~~GT~edfk~LV~aaH~~GIkVI 591 (759)
.-+-+-|.+.++. |+++|++.|-|=--+... ...|. ..+|| +|- .-|+.|++.+|++|||.=
T Consensus 45 ~i~e~~i~~~a~~mv~~Gl~~~Gy~yv~iDd~W~~~~rd~~G~-----~~~d~~rFP--~G~~~lad~iH~~GlkfG 114 (386)
T PLN02808 45 NINETLIKQTADAMVSSGLAALGYKYINLDDCWAELKRDSQGN-----LVPKASTFP--SGIKALADYVHSKGLKLG 114 (386)
T ss_pred CCCHHHHHHHHHHHHHcchHHhCCEEEEEcCCcCCCCcCCCCC-----EeeChhhcC--ccHHHHHHHHHHCCCceE
Confidence 3455677777776 689999999884433221 11221 12222 332 359999999999999753
No 206
>PLN02161 beta-amylase
Probab=25.76 E-value=2e+02 Score=34.00 Aligned_cols=64 Identities=14% Similarity=0.144 Sum_probs=48.6
Q ss_pred CHHHHHHhHHHHHhcCCCEEEECCC---CCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCEEEeeeeeccccc
Q 004353 525 WYMELKEKATELSSLGFSVIWLPPP---TESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 601 (759)
Q Consensus 525 ~l~GI~ekLdYLk~LGvtaIwL~PI---f~s~s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIkVIlDvV~NH~~~ 601 (759)
..+.+...|..||.+||++|-+--. .+..+...|+ ..-.++|++.+++.|+||..=+-|.-++.
T Consensus 115 ~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~Yd-------------WsgY~~l~~mvr~~GLKlq~vmSFHqCGG 181 (531)
T PLN02161 115 RLKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFK-------------WSLYEELFRLISEAGLKLHVALCFHSNMH 181 (531)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCC-------------cHHHHHHHHHHHHcCCeEEEEEEecccCC
Confidence 4678999999999999999987432 2333444444 34578899999999999999888877553
No 207
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=25.44 E-value=6.8e+02 Score=27.87 Aligned_cols=28 Identities=29% Similarity=0.281 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHcCCEEEeeeeecccccc
Q 004353 573 IDELKDVVNKFHDVGMKILGDVVLNHRCAH 602 (759)
Q Consensus 573 ~edfk~LV~aaH~~GIkVIlDvV~NH~~~~ 602 (759)
.+.|++|++++|++|-++++ -++|.|..
T Consensus 76 i~~lr~la~~vh~~ga~~~~--QL~H~G~~ 103 (338)
T cd02933 76 VEGWKKVTDAVHAKGGKIFL--QLWHVGRV 103 (338)
T ss_pred HHHHHHHHHHHHhcCCeEEE--EcccCccC
Confidence 46799999999999999988 56798753
No 208
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=25.36 E-value=1.1e+02 Score=34.44 Aligned_cols=64 Identities=13% Similarity=0.113 Sum_probs=46.4
Q ss_pred HhHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCEEEeeeeecccccc
Q 004353 531 EKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAH 602 (759)
Q Consensus 531 ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIkVIlDvV~NH~~~~ 602 (759)
++|..|+++||+.|.|.-=. .+..-...++ +--+.++..+.++.+++.++.|-+|++++--+..
T Consensus 105 e~L~~l~~~GvnrislGvQS-------~~d~vL~~l~-R~~~~~~~~~ai~~~~~~~~~v~~dli~GlPgqt 168 (380)
T PRK09057 105 GRFRGYRAAGVNRVSLGVQA-------LNDADLRFLG-RLHSVAEALAAIDLAREIFPRVSFDLIYARPGQT 168 (380)
T ss_pred HHHHHHHHcCCCEEEEeccc-------CCHHHHHHcC-CCCCHHHHHHHHHHHHHhCccEEEEeecCCCCCC
Confidence 88999999999999986311 1111122222 3336788889999999999999999999876654
No 209
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=25.13 E-value=55 Score=37.45 Aligned_cols=69 Identities=17% Similarity=0.160 Sum_probs=44.8
Q ss_pred HHHHHhcCCCEEEECCCCCCCCC----------CCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCEEEeeee--ecccc
Q 004353 533 ATELSSLGFSVIWLPPPTESVSP----------EGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVV--LNHRC 600 (759)
Q Consensus 533 LdYLk~LGvtaIwL~PIf~s~s~----------hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIkVIlDvV--~NH~~ 600 (759)
...-+..|+...|+..- +.... ..=...-+..+....|+..+++++++.||++|..|++|.+ +-|.-
T Consensus 129 ~~~~~~~Ga~v~~i~~~-~~g~~~~~~~~~~i~~~Tklvais~vSn~tG~~~pv~~I~~la~~~ga~v~VDaaq~~~h~~ 207 (405)
T COG0520 129 QELAKRTGAKVRVIPLD-DDGLLDLDALEKLITPKTKLVALSHVSNVTGTVNPVKEIAELAHEHGALVLVDAAQAAGHLP 207 (405)
T ss_pred HHHHHhcCcEEEEEecC-CCCCcCHHHHHHhcCCCceEEEEECccccccccchHHHHHHHHHHcCCEEEEECccccCccC
Confidence 33445569988888754 21100 1111122334446789999999999999999999999998 44444
Q ss_pred cc
Q 004353 601 AH 602 (759)
Q Consensus 601 ~~ 602 (759)
-+
T Consensus 208 id 209 (405)
T COG0520 208 ID 209 (405)
T ss_pred CC
Confidence 33
No 210
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=24.92 E-value=1.4e+02 Score=33.98 Aligned_cols=65 Identities=12% Similarity=0.110 Sum_probs=47.7
Q ss_pred HHhHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCEEEeeeeecccccc
Q 004353 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAH 602 (759)
Q Consensus 530 ~ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIkVIlDvV~NH~~~~ 602 (759)
.++|..|+++||+.|.|..= ..+..-...+ .+.-+.++..+.++.|++.++.|-+|++++.-+..
T Consensus 111 ~e~l~~l~~~GvnRiSiGvQ-------S~~d~~L~~l-gR~h~~~~~~~ai~~~~~~~~~v~~DlI~GlPgqt 175 (390)
T PRK06582 111 TEKFKAFKLAGINRVSIGVQ-------SLKEDDLKKL-GRTHDCMQAIKTIEAANTIFPRVSFDLIYARSGQT 175 (390)
T ss_pred HHHHHHHHHCCCCEEEEECC-------cCCHHHHHHc-CCCCCHHHHHHHHHHHHHhCCcEEEEeecCCCCCC
Confidence 48999999999999998741 1111112222 24446788888899999999999999999988753
No 211
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=24.82 E-value=3.4e+02 Score=31.72 Aligned_cols=65 Identities=12% Similarity=0.179 Sum_probs=44.3
Q ss_pred HHHHHHhHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCEEEeeeeeccc
Q 004353 526 YMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHR 599 (759)
Q Consensus 526 l~GI~ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIkVIlDvV~NH~ 599 (759)
+.-..+-+.-+++||+++--++=-+...-..|... + .-...+=.++||++|.++||+.|+-+ .|-
T Consensus 52 yhry~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~-----~--N~~gl~~Y~~lid~l~~~GI~P~VTL--~H~ 116 (467)
T TIGR01233 52 YHKYPVDLELAEEYGVNGIRISIAWSRIFPTGYGE-----V--NEKGVEFYHKLFAECHKRHVEPFVTL--HHF 116 (467)
T ss_pred hhhHHHHHHHHHHcCCCEEEEecchhhccCCCCCC-----c--CHHHHHHHHHHHHHHHHcCCEEEEec--cCC
Confidence 67888999999999999988764333222233211 1 11123458999999999999999744 454
No 212
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=24.61 E-value=1.5e+02 Score=27.14 Aligned_cols=61 Identities=15% Similarity=0.022 Sum_probs=37.9
Q ss_pred HhHHHHHhcC-CCEEEECCCCCCC-CCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCEEEe
Q 004353 531 EKATELSSLG-FSVIWLPPPTESV-SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILG 592 (759)
Q Consensus 531 ekLdYLk~LG-vtaIwL~PIf~s~-s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIkVIl 592 (759)
.-..++..+| +.+....+ .+.. ....-...|..-+=..-|...+..++++.|+++|.+||.
T Consensus 16 ~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~I~iS~sG~t~e~~~~~~~a~~~g~~vi~ 78 (126)
T cd05008 16 VAKYLLERLAGIPVEVEAA-SEFRYRRPLLDEDTLVIAISQSGETADTLAALRLAKEKGAKTVA 78 (126)
T ss_pred HHHHHHHHhcCCceEEEeh-hHhhhcCCCCCCCcEEEEEeCCcCCHHHHHHHHHHHHcCCeEEE
Confidence 3344677776 77776652 2111 111122333333335667888999999999999999986
No 213
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=24.36 E-value=20 Score=38.26 Aligned_cols=46 Identities=24% Similarity=0.420 Sum_probs=0.0
Q ss_pred eEEEEe-cCCCCCe-------EEEeeeccCCCCCcccCCCCCCCCcee-eecccccc
Q 004353 303 TLLNLE-TDLTGDV-------VVHWGVCRDDSKNWEIPAEPYPPETIV-FKNKALRT 350 (759)
Q Consensus 303 ~~v~~~-td~~~~~-------vlHWgv~k~~~~~W~~pp~~~~p~~s~-~~~~a~eT 350 (759)
+.++++ .+.|+.+ .|||+||+ +-+=+.|-++.-|...+ -++-|+|+
T Consensus 93 isgqLdLs~~~e~I~~PildGLLHWaVcp--sa~A~Dpfp~~~~~~~lSPqrlaLEa 147 (257)
T PF12031_consen 93 ISGQLDLSDYPESIARPILDGLLHWAVCP--SAEAQDPFPTAGPHSPLSPQRLALEA 147 (257)
T ss_pred eeeeeecccCchHHHHHHHHHHHHHHhcc--chhccCCCCCCCCCCCCCHHHHHHHH
No 214
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=24.31 E-value=1.4e+02 Score=33.42 Aligned_cols=65 Identities=18% Similarity=0.194 Sum_probs=46.9
Q ss_pred HHhHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCE-EEeeeeecccccc
Q 004353 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK-ILGDVVLNHRCAH 602 (759)
Q Consensus 530 ~ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIk-VIlDvV~NH~~~~ 602 (759)
.+.|..|+++|++.|.|.. ++. +..-+..++ +-.+.++..+.++.+++.|+. |-+|+.++..+..
T Consensus 99 ~e~l~~l~~~G~~rvsiGv--qS~-----~d~~L~~l~-R~~~~~~~~~ai~~l~~~g~~~v~~dli~GlPgqt 164 (374)
T PRK05799 99 EEKLKILKSMGVNRLSIGL--QAW-----QNSLLKYLG-RIHTFEEFLENYKLARKLGFNNINVDLMFGLPNQT 164 (374)
T ss_pred HHHHHHHHHcCCCEEEEEC--ccC-----CHHHHHHcC-CCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCC
Confidence 4789999999999999875 211 111122232 334788999999999999997 7799999876653
No 215
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=24.29 E-value=1.9e+02 Score=31.69 Aligned_cols=60 Identities=17% Similarity=0.328 Sum_probs=44.0
Q ss_pred HHHhHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCC-EEEeeeee
Q 004353 529 LKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGM-KILGDVVL 596 (759)
Q Consensus 529 I~ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GI-kVIlDvV~ 596 (759)
+.+.++.|++.|++.|.++- ++.++.-|..+... ++.+++.+-++.|.+.|+ .|.+-+|+
T Consensus 107 l~~~~~~L~~agl~~i~ISl-------ds~~~e~~~~i~~~-~~~~~vl~~i~~~~~~g~~~v~i~~vv 167 (331)
T PRK00164 107 LARRAAALKDAGLDRVNVSL-------DSLDPERFKAITGR-DRLDQVLAGIDAALAAGLTPVKVNAVL 167 (331)
T ss_pred HHHHHHHHHHcCCCEEEEEe-------ccCCHHHhccCCCC-CCHHHHHHHHHHHHHCCCCcEEEEEEE
Confidence 34678889999999998774 34444445555444 678888899999999998 77776665
No 216
>PTZ00376 aspartate aminotransferase; Provisional
Probab=24.25 E-value=2.3e+02 Score=31.78 Aligned_cols=64 Identities=11% Similarity=0.068 Sum_probs=44.0
Q ss_pred CCCHHHHHHhHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCEEEeeeeeccccc
Q 004353 523 GRWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 601 (759)
Q Consensus 523 Gg~l~GI~ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIkVIlDvV~NH~~~ 601 (759)
|-+++.+.+.+.... .-+.+++.|-..++. ...=+.+++++|++.|+++|+.||.|-++.+...
T Consensus 160 ~~d~~~l~~~~~~~~--~~~~~~~~~~p~NPT-------------G~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~ 223 (404)
T PTZ00376 160 GLDFDGMLEDLRTAP--NGSVVLLHACAHNPT-------------GVDPTEEQWKEIADVMKRKNLIPFFDMAYQGFAS 223 (404)
T ss_pred CcCHHHHHHHHHhCC--CCCEEEEeCCCCCCC-------------CCCCCHHHHHHHHHHHHhCCcEEEEehhhcCccC
Confidence 456777776654321 225677766444333 2333578999999999999999999999977653
No 217
>PLN02411 12-oxophytodienoate reductase
Probab=23.96 E-value=7.8e+02 Score=28.04 Aligned_cols=28 Identities=29% Similarity=0.365 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHcCCEEEeeeeecccccc
Q 004353 573 IDELKDVVNKFHDVGMKILGDVVLNHRCAH 602 (759)
Q Consensus 573 ~edfk~LV~aaH~~GIkVIlDvV~NH~~~~ 602 (759)
.+.++.|++++|++|-++++= ++|.|..
T Consensus 86 i~~~~~l~~avH~~G~~i~~Q--L~H~Gr~ 113 (391)
T PLN02411 86 VEAWKKVVDAVHAKGSIIFCQ--LWHVGRA 113 (391)
T ss_pred HHHHHHHHHHHHhcCCEEEEe--ccCCCCC
Confidence 357999999999999999875 4688763
No 218
>PRK08573 phosphomethylpyrimidine kinase; Provisional
Probab=23.82 E-value=1.4e+02 Score=34.61 Aligned_cols=75 Identities=11% Similarity=0.116 Sum_probs=49.8
Q ss_pred CCCHHHHHHhHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCc---------------------c-CCCCCCHHHHHHHH
Q 004353 523 GRWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYN---------------------L-SSRYGNIDELKDVV 580 (759)
Q Consensus 523 Gg~l~GI~ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~---------------------I-dp~~GT~edfk~LV 580 (759)
.+.=.||..-|.-+..||+.+.-+.-....+...+ ....+. + -..+++.+.+..++
T Consensus 13 ~~ggaGi~aDi~t~~alg~~~~~v~Ta~t~Qnt~~--~~~i~~~~~~~~~~q~~a~~~d~~~~~ik~G~l~~~e~~~~i~ 90 (448)
T PRK08573 13 SGGGAGIEADLKTFAALGVHGAVAITSVTAQNTYE--VRAIHDLPPEVVAAQIEAVWEDMGIDAAKTGMLSNREIIEAVA 90 (448)
T ss_pred CCCHHHHHHHHHHHHHcCCeecccceEEEeecCCC--ceEEEECCHHHHHHHHHHHHhcCCCCEEEECCcCCHHHHHHHH
Confidence 34457999999999999997665433332221111 111111 1 12366788999999
Q ss_pred HHHHHcCCEEEeeeeeccc
Q 004353 581 NKFHDVGMKILGDVVLNHR 599 (759)
Q Consensus 581 ~aaH~~GIkVIlDvV~NH~ 599 (759)
+.++++|++|++|-|+-..
T Consensus 91 ~~~k~~g~~vv~DPv~~~~ 109 (448)
T PRK08573 91 KTVSKYGFPLVVDPVMIAK 109 (448)
T ss_pred HHHHHcCCCEEEcCccccC
Confidence 9999999999999886543
No 219
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=23.62 E-value=1.5e+02 Score=31.32 Aligned_cols=25 Identities=16% Similarity=0.183 Sum_probs=21.0
Q ss_pred HHHHHHhHHHHHhcCCCEEEECCCC
Q 004353 526 YMELKEKATELSSLGFSVIWLPPPT 550 (759)
Q Consensus 526 l~GI~ekLdYLk~LGvtaIwL~PIf 550 (759)
.--+...+..|++||.+.|=+.|+-
T Consensus 134 iV~vetAiaml~dmG~~SiKffPM~ 158 (236)
T TIGR03581 134 IVPIETAIAMLKDMGGSSVKFFPMG 158 (236)
T ss_pred eeeHHHHHHHHHHcCCCeeeEeecC
Confidence 3467888999999999999988864
No 220
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=23.53 E-value=1.3e+02 Score=30.05 Aligned_cols=47 Identities=23% Similarity=0.392 Sum_probs=30.7
Q ss_pred HHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCEEEe
Q 004353 533 ATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILG 592 (759)
Q Consensus 533 LdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIkVIl 592 (759)
+..+.++|+++|-++|||++.+--++.+. +.+.|+++++.++ +.|+.
T Consensus 108 ~~~a~~~g~dYv~~gpvf~T~sk~~~~~~----------g~~~l~~~~~~~~---~pv~A 154 (180)
T PF02581_consen 108 AREAEELGADYVFLGPVFPTSSKPGAPPL----------GLDGLREIARASP---IPVYA 154 (180)
T ss_dssp HHHHHHCTTSEEEEETSS--SSSSS-TTC----------HHHHHHHHHHHTS---SCEEE
T ss_pred HHHhhhcCCCEEEECCccCCCCCcccccc----------CHHHHHHHHHhCC---CCEEE
Confidence 66677899999999999998765555443 3556666665554 55554
No 221
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=23.53 E-value=1.8e+02 Score=32.00 Aligned_cols=61 Identities=18% Similarity=0.284 Sum_probs=45.1
Q ss_pred HHHhHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCC-EEEeeeeec
Q 004353 529 LKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGM-KILGDVVLN 597 (759)
Q Consensus 529 I~ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GI-kVIlDvV~N 597 (759)
+.+.++.|++.|++.|.++ =++.++.-|..+-. -|+.+...+.+++|.+.|+ .|-+..|+.
T Consensus 103 l~~~~~~L~~aGl~~v~IS-------lDs~~~e~~~~i~~-~g~~~~vl~~i~~~~~~Gi~~v~in~v~~ 164 (329)
T PRK13361 103 LARFAAELADAGLKRLNIS-------LDTLRPELFAALTR-NGRLERVIAGIDAAKAAGFERIKLNAVIL 164 (329)
T ss_pred HHHHHHHHHHcCCCeEEEE-------eccCCHHHhhhhcC-CCCHHHHHHHHHHHHHcCCCceEEEEEEE
Confidence 3467889999999999875 23444444445543 4778889999999999999 788887754
No 222
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=23.44 E-value=2.2e+02 Score=30.25 Aligned_cols=22 Identities=14% Similarity=0.274 Sum_probs=19.0
Q ss_pred HHHHHhHHHHHhcCCCEEEECC
Q 004353 527 MELKEKATELSSLGFSVIWLPP 548 (759)
Q Consensus 527 ~GI~ekLdYLk~LGvtaIwL~P 548 (759)
..+.+.++.++++|++.|.|..
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~ 31 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFL 31 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEc
Confidence 3678899999999999998864
No 223
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=23.08 E-value=1.1e+03 Score=26.57 Aligned_cols=27 Identities=33% Similarity=0.394 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHcCCEEEeeeeeccccc
Q 004353 573 IDELKDVVNKFHDVGMKILGDVVLNHRCA 601 (759)
Q Consensus 573 ~edfk~LV~aaH~~GIkVIlDvV~NH~~~ 601 (759)
.+.|++|++++|++|=++++=+ +|.|.
T Consensus 77 i~~~~~l~d~vh~~Ga~i~~QL--~H~Gr 103 (361)
T cd04747 77 LAGWKKVVDEVHAAGGKIAPQL--WHVGA 103 (361)
T ss_pred HHHHHHHHHHHHhcCCEEEEec--cCCCC
Confidence 4689999999999999988754 78775
No 224
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=23.06 E-value=2.1e+02 Score=30.17 Aligned_cols=21 Identities=19% Similarity=0.050 Sum_probs=18.2
Q ss_pred HHHHhHHHHHhcCCCEEEECC
Q 004353 528 ELKEKATELSSLGFSVIWLPP 548 (759)
Q Consensus 528 GI~ekLdYLk~LGvtaIwL~P 548 (759)
++.+.++++.++|++.|.|..
T Consensus 11 ~~~~~~~~~~~~G~~~vel~~ 31 (273)
T smart00518 11 GLYKAFIEAVDIGARSFQLFL 31 (273)
T ss_pred cHhHHHHHHHHcCCCEEEEEC
Confidence 577899999999999998853
No 225
>PRK11059 regulatory protein CsrD; Provisional
Probab=23.01 E-value=1e+02 Score=37.15 Aligned_cols=75 Identities=13% Similarity=0.077 Sum_probs=49.6
Q ss_pred CCHHHHHHhHHHHHhcCCCEEEECCCCCCC---CCCCCCcccCCccCCCCCC--------HHHHHHHHHHHHHcCCEEEe
Q 004353 524 RWYMELKEKATELSSLGFSVIWLPPPTESV---SPEGYMPRDLYNLSSRYGN--------IDELKDVVNKFHDVGMKILG 592 (759)
Q Consensus 524 g~l~GI~ekLdYLk~LGvtaIwL~PIf~s~---s~hGYdp~Dy~~Idp~~GT--------~edfk~LV~aaH~~GIkVIl 592 (759)
.++..+...+..|+++||.-.. .=+-.+. .+-..-+.||-+||+.|-. ..-++.+++.||..||+||.
T Consensus 530 ~~~~~~~~~l~~L~~~G~~iai-ddfG~g~~s~~~L~~l~~d~iKid~s~v~~i~~~~~~~~~v~sli~~a~~~~i~viA 608 (640)
T PRK11059 530 QHISRLRPVLRMLRGLGCRLAV-DQAGLTVVSTSYIKELNVELIKLHPSLVRNIHKRTENQLFVRSLVGACAGTETQVFA 608 (640)
T ss_pred cCHHHHHHHHHHHHHCCCEEEE-ECCCCCcccHHHHHhCCCCEEEECHHHHhhhhcCchhHHHHHHHHHHHHHCCCeEEE
Confidence 3567888888899999886543 2111111 1112235677777765432 23489999999999999999
Q ss_pred eeeeccc
Q 004353 593 DVVLNHR 599 (759)
Q Consensus 593 DvV~NH~ 599 (759)
..|=+.-
T Consensus 609 egVEt~~ 615 (640)
T PRK11059 609 TGVESRE 615 (640)
T ss_pred EEeCCHH
Confidence 9996654
No 226
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=22.91 E-value=1.5e+02 Score=34.79 Aligned_cols=64 Identities=9% Similarity=0.080 Sum_probs=46.4
Q ss_pred HHhHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCEEEeeeeeccccc
Q 004353 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 601 (759)
Q Consensus 530 ~ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIkVIlDvV~NH~~~ 601 (759)
.+.|..+++.|++.|.+.- ++.+. .-...++.. .+.++..+.|+.++++||.+.+++++..-+.
T Consensus 287 ~ell~~l~~aG~~~v~iGi--ES~~~-----~~L~~~~K~-~t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~e 350 (497)
T TIGR02026 287 ADILHLYRRAGLVHISLGT--EAAAQ-----ATLDHFRKG-TTTSTNKEAIRLLRQHNILSEAQFITGFENE 350 (497)
T ss_pred HHHHHHHHHhCCcEEEEcc--ccCCH-----HHHHHhcCC-CCHHHHHHHHHHHHHCCCcEEEEEEEECCCC
Confidence 4678889999999999852 32211 112233332 3678899999999999999999999987664
No 227
>PRK10060 RNase II stability modulator; Provisional
Probab=22.83 E-value=61 Score=39.27 Aligned_cols=75 Identities=13% Similarity=0.116 Sum_probs=50.9
Q ss_pred CCHHHHHHhHHHHHhcCCCEEEECCCCCCC---CCCCCCcccCCccCCCCC--------CHHHHHHHHHHHHHcCCEEEe
Q 004353 524 RWYMELKEKATELSSLGFSVIWLPPPTESV---SPEGYMPRDLYNLSSRYG--------NIDELKDVVNKFHDVGMKILG 592 (759)
Q Consensus 524 g~l~GI~ekLdYLk~LGvtaIwL~PIf~s~---s~hGYdp~Dy~~Idp~~G--------T~edfk~LV~aaH~~GIkVIl 592 (759)
.+...+.+.+..|+++||.... -=+-.+. ++-..-+.|+-+||..|- ...-++.++..||..||+||+
T Consensus 538 ~~~~~~~~~l~~L~~~G~~ial-DdfGtg~ssl~~L~~l~~d~iKiD~sfv~~i~~~~~~~~~v~~ii~~a~~lg~~viA 616 (663)
T PRK10060 538 ENEELALSVIQQFSQLGAQVHL-DDFGTGYSSLSQLARFPIDAIKLDQSFVRDIHKQPVSQSLVRAIVAVAQALNLQVIA 616 (663)
T ss_pred cCHHHHHHHHHHHHHCCCEEEE-ECCCCchhhHHHHHhCCCCEEEECHHHHhccccCcchHHHHHHHHHHHHHCCCcEEE
Confidence 3567888999999999996533 2110000 011122678888886542 235689999999999999999
Q ss_pred eeeeccc
Q 004353 593 DVVLNHR 599 (759)
Q Consensus 593 DvV~NH~ 599 (759)
+.|=+.-
T Consensus 617 eGVEt~~ 623 (663)
T PRK10060 617 EGVETAK 623 (663)
T ss_pred ecCCCHH
Confidence 9985543
No 228
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=22.62 E-value=2.3e+02 Score=28.03 Aligned_cols=55 Identities=25% Similarity=0.326 Sum_probs=38.6
Q ss_pred HHHHhcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCEEEe
Q 004353 534 TELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILG 592 (759)
Q Consensus 534 dYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIkVIl 592 (759)
..|..+|+.+..+..... ..-...|..-+=..-|...++.++++.||++|++||.
T Consensus 50 ~~l~~~g~~~~~~~~~~~----~~~~~~Dv~I~iS~sG~t~~~i~~~~~ak~~g~~ii~ 104 (179)
T TIGR03127 50 MRLMHLGFNVYVVGETTT----PSIKKGDLLIAISGSGETESLVTVAKKAKEIGATVAA 104 (179)
T ss_pred HHHHhCCCeEEEeCCccc----CCCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEE
Confidence 357889999998865431 1122233333335667889999999999999999986
No 229
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=22.21 E-value=1.8e+02 Score=30.89 Aligned_cols=54 Identities=15% Similarity=0.187 Sum_probs=38.2
Q ss_pred HHHHhHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCEEEe
Q 004353 528 ELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILG 592 (759)
Q Consensus 528 GI~ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIkVIl 592 (759)
.+.+.++-++++|+++|-|.+-- .+. .+.+.--+.++++++.+.+.++||+|..
T Consensus 22 ~~~e~~~~~~~~G~~~iEl~~~~----~~~-------~~~~~~~~~~~~~~l~~~l~~~gl~i~~ 75 (283)
T PRK13209 22 CWLEKLAIAKTAGFDFVEMSVDE----SDE-------RLARLDWSREQRLALVNALVETGFRVNS 75 (283)
T ss_pred CHHHHHHHHHHcCCCeEEEecCc----ccc-------chhccCCCHHHHHHHHHHHHHcCCceeE
Confidence 56788999999999999996311 111 0111112567899999999999999864
No 230
>COG1809 (2R)-phospho-3-sulfolactate synthase (PSL synthase, CoM biosynthesis) [Coenzyme transport and metabolism]
Probab=22.18 E-value=1.9e+02 Score=30.68 Aligned_cols=48 Identities=25% Similarity=0.455 Sum_probs=37.9
Q ss_pred HHHHhHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCEEEee
Q 004353 528 ELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGD 593 (759)
Q Consensus 528 GI~ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIkVIlD 593 (759)
.+.+-|.+.++||+++|-++= |.-+. +.++.++||+.+-+.|..|.-.
T Consensus 91 kvdeyl~e~~~lGfe~iEIS~--------G~i~m----------~~eek~~lIe~a~d~Gf~vlsE 138 (258)
T COG1809 91 KVDEYLNEAKELGFEAIEISN--------GTIPM----------STEEKCRLIERAVDEGFMVLSE 138 (258)
T ss_pred cHHHHHHHHHHcCccEEEecC--------Ceeec----------chHHHHHHHHHHHhcccEEehh
Confidence 566778899999999999872 33333 4688999999999999987653
No 231
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=21.81 E-value=2.4e+02 Score=31.45 Aligned_cols=62 Identities=8% Similarity=0.038 Sum_probs=43.9
Q ss_pred CCCHHHHHHhHHHHHhcCC-CEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCEEEeeeeecccc
Q 004353 523 GRWYMELKEKATELSSLGF-SVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRC 600 (759)
Q Consensus 523 Gg~l~GI~ekLdYLk~LGv-taIwL~PIf~s~s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIkVIlDvV~NH~~ 600 (759)
|-+++.+.+.+. ...- +.+++.|-..++.+ .-=+.+++++|++.|+++|+-||.|-++.+..
T Consensus 156 ~~d~~~l~~~~~---~~~~~~~~~i~~~p~NPTG-------------~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~ 218 (396)
T PRK09257 156 GLDFDAMLADLS---QAPAGDVVLLHGCCHNPTG-------------ADLTPEQWDELAELLKERGLIPFLDIAYQGFG 218 (396)
T ss_pred ccCHHHHHHHHH---hCCCCCEEEEeCCCCCCCC-------------CCCCHHHHHHHHHHHHhCCcEEEEeccccccc
Confidence 456666665544 3333 68888775444332 22257899999999999999999999987765
No 232
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=21.65 E-value=1.1e+02 Score=33.83 Aligned_cols=65 Identities=12% Similarity=0.116 Sum_probs=45.1
Q ss_pred HHhHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCEEEeeeeecccc
Q 004353 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRC 600 (759)
Q Consensus 530 ~ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIkVIlDvV~NH~~ 600 (759)
.+.|..|++.|++.+..+ +..-++..=+..+.|.=-+.++..+.++.||+.||++-.=+.+.|--
T Consensus 141 ~e~l~~LkeAGl~~i~~~------~~E~~~~~v~~~i~~~~~~~~~~~~~i~~a~~~Gi~v~s~~i~G~~E 205 (343)
T TIGR03551 141 EEALKRLKEAGLDSMPGT------AAEILDDEVRKVICPDKLSTAEWIEIIKTAHKLGIPTTATIMYGHVE 205 (343)
T ss_pred HHHHHHHHHhCcccccCc------chhhcCHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcccceEEEecCC
Confidence 688999999999998621 11112222222344432266788999999999999999888888763
No 233
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=21.40 E-value=2.5e+02 Score=27.47 Aligned_cols=59 Identities=12% Similarity=-0.008 Sum_probs=39.7
Q ss_pred HHHHHHhHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHH---cCCEEEeeeeeccc
Q 004353 526 YMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHD---VGMKILGDVVLNHR 599 (759)
Q Consensus 526 l~GI~ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~---~GIkVIlDvV~NH~ 599 (759)
.+...+.+.+.+++|+++|.+.|.+- +..+ ++.+.+.+.++++.+ .++-||+...+-++
T Consensus 64 ~~~~~~~a~~a~~~Gad~i~v~~~~~------------~~~~---~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~ 125 (201)
T cd00945 64 TEVKVAEVEEAIDLGADEIDVVINIG------------SLKE---GDWEEVLEEIAAVVEAADGGLPLKVILETRGL 125 (201)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeccHH------------HHhC---CCHHHHHHHHHHHHHHhcCCceEEEEEECCCC
Confidence 78888999999999999999987541 1111 134444444444444 49999997776554
No 234
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=21.38 E-value=1.4e+02 Score=31.68 Aligned_cols=67 Identities=18% Similarity=0.272 Sum_probs=45.0
Q ss_pred CHHHHHHhHHHHHhcCCCEEEECCCCCCCCCCCCC--------cccCCccCCCCCC--------HHHHHHHHHHHHHcCC
Q 004353 525 WYMELKEKATELSSLGFSVIWLPPPTESVSPEGYM--------PRDLYNLSSRYGN--------IDELKDVVNKFHDVGM 588 (759)
Q Consensus 525 ~l~GI~ekLdYLk~LGvtaIwL~PIf~s~s~hGYd--------p~Dy~~Idp~~GT--------~edfk~LV~aaH~~GI 588 (759)
+...+...+..|+++||.. .|- .-+-||. +.|+-+||..|-. ..-++.+|+-||+.||
T Consensus 134 ~~~~~~~~l~~L~~~G~~i-alD-----DFGtG~ssl~~L~~l~~d~iKID~~fi~~i~~~~~~~~iv~~iv~la~~l~~ 207 (256)
T COG2200 134 DLDTALALLRQLRELGVRI-ALD-----DFGTGYSSLSYLKRLPPDILKIDRSFVRDLETDARDQAIVRAIVALAHKLGL 207 (256)
T ss_pred CHHHHHHHHHHHHHCCCeE-EEE-----CCCCCHHHHHHHhhCCCCeEEECHHHHhhcccCcchHHHHHHHHHHHHHCCC
Confidence 3456777788888888643 322 1122322 4466777765532 2459999999999999
Q ss_pred EEEeeeeec
Q 004353 589 KILGDVVLN 597 (759)
Q Consensus 589 kVIlDvV~N 597 (759)
+||...|=+
T Consensus 208 ~vvaEGVEt 216 (256)
T COG2200 208 TVVAEGVET 216 (256)
T ss_pred EEEEeecCC
Confidence 999998844
No 235
>COG3661 AguA Alpha-glucuronidase [Carbohydrate transport and metabolism]
Probab=21.01 E-value=2.3e+02 Score=32.86 Aligned_cols=67 Identities=16% Similarity=0.289 Sum_probs=48.5
Q ss_pred CCCCHHHHHHhHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCEEEeeeeec
Q 004353 522 SGRWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLN 597 (759)
Q Consensus 522 ~Gg~l~GI~ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIkVIlDvV~N 597 (759)
.|...+.+.+-..-|+++|||++-|+-+.-.. .+-|-|+..| ..+++.|.+..+..||||.|-+-|.
T Consensus 178 ~~~n~qR~kDYAR~laSiGINg~v~NNVNvk~-------~e~~lit~~f--l~k~aklAdiFR~YGIK~yLsinfa 244 (684)
T COG3661 178 PGHNDQRMKDYARALASIGINGTVLNNVNVKK-------AESYLITAPF--LAKAAKLADIFRPYGIKVYLSINFA 244 (684)
T ss_pred cccchHHHHHHHHHHhhcCcceEEecccccch-------hhhheechHh--HHHHHHHHHHhhhccceEEEEeccC
Confidence 35667888888899999999999998665321 1122233222 4578889999999999999976554
No 236
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=21.00 E-value=1.9e+02 Score=33.55 Aligned_cols=64 Identities=11% Similarity=0.106 Sum_probs=45.9
Q ss_pred HHhHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcC-CEEEeeeeeccccc
Q 004353 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVG-MKILGDVVLNHRCA 601 (759)
Q Consensus 530 ~ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~G-IkVIlDvV~NH~~~ 601 (759)
.++|..++++||+.|.|.- .. .+..-...++ +--+.++..+.++.+++.| +.|.+|+++..-+.
T Consensus 163 ~e~l~~l~~aGvnRiSiGV-QS------f~d~vLk~lg-R~~~~~~~~~~i~~l~~~g~~~v~~DlI~GlPgq 227 (449)
T PRK09058 163 DEKADAALDAGANRFSIGV-QS------FNTQVRRRAG-RKDDREEVLARLEELVARDRAAVVCDLIFGLPGQ 227 (449)
T ss_pred HHHHHHHHHcCCCEEEecC-Cc------CCHHHHHHhC-CCCCHHHHHHHHHHHHhCCCCcEEEEEEeeCCCC
Confidence 5789999999999999863 11 1111111222 2336788999999999999 89999999988775
No 237
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=20.98 E-value=1.5e+02 Score=33.61 Aligned_cols=65 Identities=12% Similarity=0.038 Sum_probs=46.7
Q ss_pred HHhHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCEEEeeeeecccccc
Q 004353 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAH 602 (759)
Q Consensus 530 ~ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIkVIlDvV~NH~~~~ 602 (759)
.++|..|+++||+.|.|.-= + .++.-+-.++. --+.++..+.|+.+++.+..|-+|++++.-+..
T Consensus 122 ~e~L~~l~~~GvnrisiGvQ--S-----~~~~~L~~l~R-~~~~~~~~~~i~~~~~~~~~v~~dlI~GlPgqt 186 (394)
T PRK08898 122 AEKFAQFRASGVNRLSIGIQ--S-----FNDAHLKALGR-IHDGAEARAAIEIAAKHFDNFNLDLMYALPGQT 186 (394)
T ss_pred HHHHHHHHHcCCCeEEEecc--c-----CCHHHHHHhCC-CCCHHHHHHHHHHHHHhCCceEEEEEcCCCCCC
Confidence 38899999999999998631 1 11222222222 235678888899999999999999999987753
No 238
>PLN02721 threonine aldolase
Probab=20.92 E-value=1.8e+02 Score=31.38 Aligned_cols=60 Identities=10% Similarity=-0.021 Sum_probs=38.9
Q ss_pred CCHHHHHHhHHHHHhc---CCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCEEEeeeee
Q 004353 524 RWYMELKEKATELSSL---GFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVL 596 (759)
Q Consensus 524 g~l~GI~ekLdYLk~L---GvtaIwL~PIf~s~s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIkVIlDvV~ 596 (759)
-+++.+.+.+.....- ....|+|.|++.++...-+ +.++++++++.||++|+.||+|-..
T Consensus 118 ~d~~~l~~~i~~~~~~~~~~~~~v~l~~~~~np~G~~~-------------~~~~l~~l~~l~~~~g~~livD~a~ 180 (353)
T PLN02721 118 MDLDAIEAAIRPKGDDHFPTTRLICLENTHANCGGRCL-------------SVEYTDKVGELAKRHGLKLHIDGAR 180 (353)
T ss_pred cCHHHHHHHHHhccCCCCCcceEEEEeccccccCCccc-------------cHHHHHHHHHHHHHcCCEEEEEchh
Confidence 3567777666533111 2357888775543321111 3567999999999999999999864
No 239
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=20.57 E-value=1.1e+02 Score=30.67 Aligned_cols=47 Identities=17% Similarity=0.209 Sum_probs=34.7
Q ss_pred CCHHHHHHHHHHHHHHHHcCCccEEEEeccC---------cccHHHHHHHHHhCCC
Q 004353 652 SQDFVRKDIKEWLCWLRNEIGYDGWRLDFVR---------GFWGGYVKDYLEATEP 698 (759)
Q Consensus 652 ~np~Vr~~i~d~l~~Wi~e~GVDGFRlD~ak---------~f~~~~~~~~~~~~p~ 698 (759)
.++..|+.+++.+..+++++|+||+-+|.-. .-...++++++++.+.
T Consensus 84 ~~~~~~~~f~~~~~~~v~~~~~DGidiD~E~~~~~~~~~~~~~~~ll~~lr~~l~~ 139 (210)
T cd00598 84 SDPASRAAFANSLVSFLKTYGFDGVDIDWEYPGAADNSDRENFITLLRELRSALGA 139 (210)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCceEEeeeCCCCcCccHHHHHHHHHHHHHHHhcc
Confidence 4677888888888888889999999999843 1234566677776543
No 240
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=20.23 E-value=1.7e+02 Score=27.71 Aligned_cols=60 Identities=12% Similarity=0.136 Sum_probs=39.8
Q ss_pred HHHHHHhHHHHHhcCCCEEEECCCCCCCCCC---------CCC-cccCCccC-CCCCCHHHHHHHHHHHHH
Q 004353 526 YMELKEKATELSSLGFSVIWLPPPTESVSPE---------GYM-PRDLYNLS-SRYGNIDELKDVVNKFHD 585 (759)
Q Consensus 526 l~GI~ekLdYLk~LGvtaIwL~PIf~s~s~h---------GYd-p~Dy~~Id-p~~GT~edfk~LV~aaH~ 585 (759)
...+.+.|+.|.+.|++.|.+.|.+-.++-+ .|. +..=..+. |-+.+.+|...+++++++
T Consensus 55 ~p~~~eaL~~l~~~G~~~V~V~Pl~l~~G~e~~di~~~v~~~~~~~~~i~~g~pLl~~~~d~~~v~~al~~ 125 (127)
T cd03412 55 VDTPEEALAKLAADGYTEVIVQSLHIIPGEEYEKLKREVDAFKKGFKKIKLGRPLLYSPEDYEEVAAALKD 125 (127)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEeCeeECcHHHHHHHHHHHHHhCCCceEEEccCCCCCHHHHHHHHHHHHh
Confidence 4578899999999999999999998655321 111 11111222 445567788888877764
No 241
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=20.22 E-value=2e+02 Score=31.51 Aligned_cols=66 Identities=17% Similarity=0.241 Sum_probs=43.0
Q ss_pred HHHHhHHHHHhcCC-CEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCEEEeeeeeccccc
Q 004353 528 ELKEKATELSSLGF-SVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 601 (759)
Q Consensus 528 GI~ekLdYLk~LGv-taIwL~PIf~s~s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIkVIlDvV~NH~~~ 601 (759)
...+.|..+++.|+ ..|.|.. ++.+. .-.-.++.. -+.+++.+.++.++++||+|..|+.++--+.
T Consensus 124 e~l~~L~~l~~~G~~~~i~lGl--QS~~d-----~~L~~i~Rg-~t~~~~~~ai~~l~~~gi~v~~~lI~GlPge 190 (302)
T TIGR01212 124 EVLDLLAEYVERGYEVWVELGL--QTAHD-----KTLKKINRG-HDFACYVDAVKRARKRGIKVCSHVILGLPGE 190 (302)
T ss_pred HHHHHHHHhhhCCceEEEEEcc--CcCCH-----HHHHHHcCc-ChHHHHHHHHHHHHHcCCEEEEeEEECCCCC
Confidence 45566666777799 4677653 21111 111122222 2568999999999999999999999886554
No 242
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=20.21 E-value=4.6e+02 Score=30.73 Aligned_cols=67 Identities=15% Similarity=0.232 Sum_probs=43.9
Q ss_pred HHHHHHhHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCEEEeeeeecccc
Q 004353 526 YMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRC 600 (759)
Q Consensus 526 l~GI~ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIkVIlDvV~NH~~ 600 (759)
+.-..+-++-+++||+++-=++=-+...-..|... . +.-...+=.++||++|.++||..|+-+ .|-.
T Consensus 66 Yhry~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~----~--~N~~gl~~Y~~lid~L~~~GI~P~VTL--~H~d 132 (476)
T PRK09589 66 YHRYKEDIALFAEMGFKCFRTSIAWTRIFPQGDEL----E--PNEEGLQFYDDLFDECLKQGIEPVVTL--SHFE 132 (476)
T ss_pred HHhhHHHHHHHHHcCCCEEEeccchhhcCcCCCCC----C--CCHHHHHHHHHHHHHHHHcCCEEEEEe--cCCC
Confidence 67889999999999999988763332211222110 0 011123458899999999999999854 4543
No 243
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=20.16 E-value=2.1e+02 Score=32.74 Aligned_cols=77 Identities=19% Similarity=0.313 Sum_probs=56.0
Q ss_pred CCHHHHHHhHHHHHhcCCCEEEECCCCCCC----CCCCCCcccCCcc--------C-------------------CC--C
Q 004353 524 RWYMELKEKATELSSLGFSVIWLPPPTESV----SPEGYMPRDLYNL--------S-------------------SR--Y 570 (759)
Q Consensus 524 g~l~GI~ekLdYLk~LGvtaIwL~PIf~s~----s~hGYdp~Dy~~I--------d-------------------p~--~ 570 (759)
|=-++|.=.++-|+.-|-|.+.=-|=|..- .++|--++ ||++ | |. -
T Consensus 134 GC~qAIe~~i~~LA~p~aNILlPrPGfp~Y~~~a~~~~lEVR-~ydlLPe~~weIDL~~veal~DENT~AivviNP~NPc 212 (447)
T KOG0259|consen 134 GCSQAIELAISSLANPGANILLPRPGFPLYDTRAIYSGLEVR-YYDLLPEKDWEIDLDGVEALADENTVAIVVINPNNPC 212 (447)
T ss_pred cchHHHHHHHHHhcCCCCceecCCCCCchHHHhhhhcCceeE-eecccCcccceechHHHHHhhccCeeEEEEeCCCCCC
Confidence 447899999999999999988877777532 23332222 1221 1 11 2
Q ss_pred C---CHHHHHHHHHHHHHcCCEEEeeeeeccccc
Q 004353 571 G---NIDELKDVVNKFHDVGMKILGDVVLNHRCA 601 (759)
Q Consensus 571 G---T~edfk~LV~aaH~~GIkVIlDvV~NH~~~ 601 (759)
| |.+-|+++++.||+.||-||.|=|+.|+.-
T Consensus 213 GnVys~~HL~kiae~A~klgi~vIaDEVY~~~vf 246 (447)
T KOG0259|consen 213 GNVYSEDHLKKIAETAKKLGIMVIADEVYGHTVF 246 (447)
T ss_pred cccccHHHHHHHHHHHHHhCCeEEehhhcceeec
Confidence 3 367899999999999999999999999864
No 244
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=20.11 E-value=2.5e+02 Score=35.53 Aligned_cols=26 Identities=19% Similarity=0.507 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHcCCEEEeeeeecc
Q 004353 573 IDELKDVVNKFHDVGMKILGDVVLNH 598 (759)
Q Consensus 573 ~edfk~LV~aaH~~GIkVIlDvV~NH 598 (759)
.+.|+++|++++++||+||.=+-+.+
T Consensus 807 ~~~l~~~i~~~~~~~~~~ig~~~p~~ 832 (912)
T TIGR02171 807 MNSLKAFIDETAKKGVKVIGTIFPQS 832 (912)
T ss_pred HHHHHHHHHHHHhCCCEEEEEECCCC
Confidence 56899999999999999998665544
No 245
>PRK05967 cystathionine beta-lyase; Provisional
Probab=20.06 E-value=1.2e+02 Score=34.71 Aligned_cols=29 Identities=10% Similarity=0.166 Sum_probs=26.7
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEeeeeecc
Q 004353 570 YGNIDELKDVVNKFHDVGMKILGDVVLNH 598 (759)
Q Consensus 570 ~GT~edfk~LV~aaH~~GIkVIlDvV~NH 598 (759)
.++..+++++++.||++|+.||+|-++..
T Consensus 162 ~l~v~dl~~I~~la~~~g~~vvVD~t~a~ 190 (395)
T PRK05967 162 TFEMQDIPAIAEAAHRHGAIVMMDNTWAT 190 (395)
T ss_pred CCcHHHHHHHHHHHHHhCCEEEEECCccC
Confidence 67899999999999999999999999853
No 246
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=20.02 E-value=1.1e+03 Score=25.26 Aligned_cols=46 Identities=11% Similarity=0.146 Sum_probs=34.1
Q ss_pred HHhHHHHHhcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCCEEEeeee
Q 004353 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVV 595 (759)
Q Consensus 530 ~ekLdYLk~LGvtaIwL~PIf~s~s~hGYdp~Dy~~Idp~~GT~edfk~LV~aaH~~GIkVIlDvV 595 (759)
.+.++...+.|++.|.+.= ..-..+..+++++.++++|++|.+-+.
T Consensus 85 ~~~l~~a~~~gv~~iri~~--------------------~~~~~~~~~~~i~~ak~~G~~v~~~~~ 130 (266)
T cd07944 85 IDLLEPASGSVVDMIRVAF--------------------HKHEFDEALPLIKAIKEKGYEVFFNLM 130 (266)
T ss_pred HHHHHHHhcCCcCEEEEec--------------------ccccHHHHHHHHHHHHHCCCeEEEEEE
Confidence 4556667788999887741 011578899999999999998876544
Done!