Query 004354
Match_columns 759
No_of_seqs 641 out of 4115
Neff 7.1
Searched_HMMs 46136
Date Thu Mar 28 22:00:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004354.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004354hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2352 Predicted spermine/spe 100.0 3.6E-63 7.8E-68 540.1 22.6 442 18-723 3-462 (482)
2 PRK04457 spermidine synthase; 100.0 3.4E-29 7.3E-34 264.3 27.1 223 436-750 26-251 (262)
3 PLN02823 spermine synthase 99.9 1.5E-23 3.2E-28 227.5 24.7 182 504-730 87-282 (336)
4 COG0421 SpeE Spermidine syntha 99.9 1E-21 2.2E-26 207.7 25.3 187 504-739 60-260 (282)
5 PF01564 Spermine_synth: Sperm 99.9 2.2E-22 4.8E-27 210.4 18.1 168 504-717 60-236 (246)
6 PRK00811 spermidine synthase; 99.9 6.5E-21 1.4E-25 203.6 24.6 167 504-717 60-238 (283)
7 PLN02366 spermidine synthase 99.9 1.7E-20 3.6E-25 201.7 23.9 168 504-717 75-254 (308)
8 PRK01581 speE spermidine synth 99.8 3.5E-19 7.7E-24 192.3 20.6 170 504-719 134-316 (374)
9 TIGR00417 speE spermidine synt 99.8 7.8E-18 1.7E-22 179.0 23.5 167 504-717 56-233 (270)
10 PRK00536 speE spermidine synth 99.7 5.7E-17 1.2E-21 169.8 17.0 161 494-718 42-217 (262)
11 KOG1271 Methyltransferases [Ge 99.7 5.6E-16 1.2E-20 149.3 13.0 147 18-168 10-183 (227)
12 PRK03612 spermidine synthase; 99.7 1.8E-15 3.9E-20 174.7 18.6 168 504-718 281-461 (521)
13 COG2226 UbiE Methylase involve 99.6 6.6E-15 1.4E-19 151.9 14.0 116 52-170 38-160 (238)
14 PLN02336 phosphoethanolamine N 99.6 1E-12 2.2E-17 150.9 29.3 106 56-166 28-142 (475)
15 TIGR03840 TMPT_Se_Te thiopurin 99.6 2.5E-14 5.4E-19 146.7 13.4 133 29-168 1-154 (213)
16 PRK13255 thiopurine S-methyltr 99.6 9.3E-14 2E-18 143.0 16.9 134 27-167 2-156 (218)
17 PF01209 Ubie_methyltran: ubiE 99.5 3E-14 6.6E-19 148.0 10.8 112 56-170 38-157 (233)
18 PF12847 Methyltransf_18: Meth 99.5 1.3E-13 2.9E-18 125.9 12.6 98 68-166 1-111 (112)
19 PRK13256 thiopurine S-methyltr 99.5 3.2E-13 6.9E-18 138.8 15.0 136 26-168 7-165 (226)
20 PLN02233 ubiquinone biosynthes 99.5 4.5E-13 9.8E-18 141.8 15.4 114 54-170 62-186 (261)
21 PRK11207 tellurite resistance 99.5 4.6E-13 1E-17 135.9 13.5 108 56-167 21-135 (197)
22 PF08241 Methyltransf_11: Meth 99.5 1.8E-13 4E-18 120.3 9.2 90 73-164 1-95 (95)
23 COG4262 Predicted spermidine s 99.5 6.5E-13 1.4E-17 140.1 14.5 156 528-720 288-455 (508)
24 PF03848 TehB: Tellurite resis 99.4 8.6E-13 1.9E-17 132.2 13.0 100 67-167 29-134 (192)
25 COG2227 UbiG 2-polyprenyl-3-me 99.4 1.6E-13 3.5E-18 139.5 7.7 101 68-169 59-164 (243)
26 PLN02244 tocopherol O-methyltr 99.4 1.4E-12 3.1E-17 143.2 15.7 101 67-168 117-225 (340)
27 PF05724 TPMT: Thiopurine S-me 99.4 3.8E-13 8.2E-18 138.3 9.9 134 27-167 2-156 (218)
28 TIGR00477 tehB tellurite resis 99.4 1.3E-12 2.8E-17 132.4 13.6 108 56-167 21-134 (195)
29 PRK11088 rrmA 23S rRNA methylt 99.4 8.5E-13 1.8E-17 140.6 12.5 145 16-172 36-187 (272)
30 PF05401 NodS: Nodulation prot 99.4 7E-13 1.5E-17 131.5 10.5 136 26-168 4-148 (201)
31 PRK11783 rlmL 23S rRNA m(2)G24 99.4 3.3E-09 7.2E-14 127.0 40.5 112 530-677 539-656 (702)
32 KOG1562 Spermidine synthase [A 99.4 1.2E-12 2.7E-17 135.3 8.7 146 504-698 105-259 (337)
33 PF13847 Methyltransf_31: Meth 99.4 4.6E-12 1E-16 122.9 12.0 102 67-168 2-112 (152)
34 PRK10258 biotin biosynthesis p 99.4 5.6E-12 1.2E-16 132.6 13.3 100 67-171 41-145 (251)
35 PLN02396 hexaprenyldihydroxybe 99.3 3.1E-12 6.7E-17 138.8 10.8 101 68-169 131-238 (322)
36 TIGR02752 MenG_heptapren 2-hep 99.3 1.3E-11 2.7E-16 128.1 15.0 119 49-170 29-155 (231)
37 PRK00107 gidB 16S rRNA methylt 99.3 2.1E-11 4.5E-16 122.6 15.7 120 68-191 45-169 (187)
38 KOG1540 Ubiquinone biosynthesi 99.3 7.7E-12 1.7E-16 127.2 12.4 124 65-190 97-236 (296)
39 KOG1270 Methyltransferases [Co 99.3 1.6E-12 3.5E-17 132.9 7.5 98 69-168 90-197 (282)
40 PRK11036 putative S-adenosyl-L 99.3 6.6E-12 1.4E-16 132.5 12.3 102 68-170 44-153 (255)
41 PF13649 Methyltransf_25: Meth 99.3 3.4E-12 7.3E-17 115.1 8.5 89 72-160 1-101 (101)
42 PTZ00098 phosphoethanolamine N 99.3 1.9E-11 4.2E-16 129.6 14.7 101 67-169 51-159 (263)
43 TIGR00138 gidB 16S rRNA methyl 99.3 2.5E-11 5.4E-16 121.5 14.4 123 68-193 42-169 (181)
44 PRK15068 tRNA mo(5)U34 methylt 99.3 1.4E-11 3E-16 134.3 13.2 108 57-167 114-227 (322)
45 COG2230 Cfa Cyclopropane fatty 99.3 1E-11 2.2E-16 130.6 11.5 114 57-171 61-181 (283)
46 PRK12335 tellurite resistance 99.3 1.8E-11 3.9E-16 131.5 13.3 98 68-166 120-223 (287)
47 PF02353 CMAS: Mycolic acid cy 99.3 1.8E-11 4E-16 130.1 12.7 112 56-168 50-168 (273)
48 PRK14103 trans-aconitate 2-met 99.3 1.4E-11 3E-16 130.1 11.7 95 67-167 28-127 (255)
49 TIGR00537 hemK_rel_arch HemK-r 99.3 5.9E-11 1.3E-15 118.4 15.5 102 67-169 18-143 (179)
50 TIGR00452 methyltransferase, p 99.3 1.9E-11 4.1E-16 132.1 12.5 101 67-167 120-226 (314)
51 PRK08287 cobalt-precorrin-6Y C 99.3 1.2E-10 2.6E-15 117.0 16.5 153 52-210 18-184 (187)
52 KOG2361 Predicted methyltransf 99.3 3.8E-11 8.3E-16 121.5 12.7 146 26-176 34-193 (264)
53 PF01596 Methyltransf_3: O-met 99.3 1.9E-11 4.1E-16 124.5 10.6 107 528-676 44-154 (205)
54 PRK15451 tRNA cmo(5)U34 methyl 99.3 6E-11 1.3E-15 124.7 14.2 101 67-167 55-165 (247)
55 COG4122 Predicted O-methyltran 99.2 5.5E-11 1.2E-15 121.3 12.5 128 528-701 58-197 (219)
56 PRK04266 fibrillarin; Provisio 99.2 3.1E-10 6.7E-15 117.5 18.1 119 45-164 49-174 (226)
57 PF13489 Methyltransf_23: Meth 99.2 5.5E-11 1.2E-15 115.3 11.9 107 52-170 8-119 (161)
58 PLN02336 phosphoethanolamine N 99.2 8.6E-11 1.9E-15 135.0 15.3 101 67-168 265-371 (475)
59 PRK01683 trans-aconitate 2-met 99.2 7.2E-11 1.6E-15 124.6 13.4 96 67-166 30-130 (258)
60 PRK00377 cbiT cobalt-precorrin 99.2 2.9E-10 6.2E-15 115.5 16.5 154 52-210 27-197 (198)
61 PRK00121 trmB tRNA (guanine-N( 99.2 4.8E-11 1E-15 121.6 10.5 119 68-187 40-177 (202)
62 PF12847 Methyltransf_18: Meth 99.2 5.1E-11 1.1E-15 108.8 9.7 109 530-677 2-111 (112)
63 PF05175 MTS: Methyltransferas 99.2 8.2E-11 1.8E-15 116.6 11.6 111 55-168 21-142 (170)
64 TIGR02072 BioC biotin biosynth 99.2 1.7E-10 3.6E-15 119.4 13.4 101 68-171 34-140 (240)
65 TIGR02469 CbiT precorrin-6Y C5 99.2 4.5E-10 9.7E-15 104.1 14.7 100 67-167 18-123 (124)
66 TIGR03587 Pse_Me-ase pseudamin 99.2 1.5E-10 3.3E-15 118.1 12.5 95 67-167 42-143 (204)
67 PRK14967 putative methyltransf 99.2 2.5E-10 5.3E-15 118.2 13.9 101 67-167 35-160 (223)
68 TIGR00740 methyltransferase, p 99.2 2E-10 4.3E-15 120.0 13.3 101 67-167 52-162 (239)
69 PRK01544 bifunctional N5-gluta 99.2 1.6E-08 3.4E-13 116.7 29.1 131 529-694 347-477 (506)
70 PRK06922 hypothetical protein; 99.2 2.4E-10 5.3E-15 131.8 13.8 99 68-166 418-537 (677)
71 PRK00216 ubiE ubiquinone/menaq 99.1 3.4E-10 7.4E-15 117.3 13.3 103 67-169 50-161 (239)
72 PRK08317 hypothetical protein; 99.1 4.7E-10 1E-14 115.9 14.3 111 54-167 8-125 (241)
73 PRK11705 cyclopropane fatty ac 99.1 3.1E-10 6.8E-15 126.4 13.7 102 66-170 165-271 (383)
74 KOG4300 Predicted methyltransf 99.1 1.3E-10 2.8E-15 114.8 8.8 103 67-169 75-185 (252)
75 PRK05785 hypothetical protein; 99.1 5.8E-10 1.3E-14 115.7 13.8 93 68-169 51-148 (226)
76 PF08242 Methyltransf_12: Meth 99.1 9E-12 2E-16 111.7 0.3 90 73-162 1-99 (99)
77 PLN02490 MPBQ/MSBQ methyltrans 99.1 2.5E-10 5.4E-15 124.5 11.4 99 67-167 112-216 (340)
78 PRK15001 SAM-dependent 23S rib 99.1 5.6E-10 1.2E-14 123.4 14.3 111 54-167 217-341 (378)
79 PRK09489 rsmC 16S ribosomal RN 99.1 6.6E-10 1.4E-14 121.9 14.2 140 24-168 152-305 (342)
80 TIGR01934 MenG_MenH_UbiE ubiqu 99.1 1.1E-09 2.4E-14 112.2 14.8 102 67-169 38-146 (223)
81 PRK11873 arsM arsenite S-adeno 99.1 5.1E-10 1.1E-14 119.2 12.5 102 67-168 76-185 (272)
82 PF08003 Methyltransf_9: Prote 99.1 5.7E-10 1.2E-14 117.6 12.5 120 45-169 97-222 (315)
83 PRK13944 protein-L-isoaspartat 99.1 8.7E-10 1.9E-14 112.6 13.6 108 52-166 59-173 (205)
84 PLN02476 O-methyltransferase 99.1 6.5E-10 1.4E-14 117.7 12.3 107 528-676 117-227 (278)
85 PRK07402 precorrin-6B methylas 99.1 3.4E-09 7.4E-14 107.4 17.1 155 51-210 26-195 (196)
86 smart00828 PKS_MT Methyltransf 99.1 5.4E-10 1.2E-14 115.3 11.2 98 71-168 2-106 (224)
87 PF13659 Methyltransf_26: Meth 99.1 4.2E-10 9E-15 103.7 9.0 98 70-167 2-116 (117)
88 PRK07580 Mg-protoporphyrin IX 99.1 9.8E-10 2.1E-14 113.6 12.7 131 28-160 22-160 (230)
89 TIGR02021 BchM-ChlM magnesium 99.1 9.9E-10 2.1E-14 113.2 12.5 132 28-164 14-156 (219)
90 TIGR03438 probable methyltrans 99.1 1.6E-09 3.4E-14 117.3 14.4 147 16-167 15-178 (301)
91 PLN03075 nicotianamine synthas 99.1 3.7E-09 7.9E-14 112.7 16.6 162 44-210 99-274 (296)
92 PRK14968 putative methyltransf 99.1 5.1E-09 1.1E-13 104.5 16.8 100 67-167 22-149 (188)
93 TIGR00080 pimt protein-L-isoas 99.1 1.6E-09 3.5E-14 111.4 13.4 108 52-166 64-177 (215)
94 COG2264 PrmA Ribosomal protein 99.1 3.5E-09 7.6E-14 112.5 16.1 125 67-193 161-290 (300)
95 smart00138 MeTrc Methyltransfe 99.1 1E-09 2.3E-14 116.4 12.2 99 68-166 99-242 (264)
96 TIGR00091 tRNA (guanine-N(7)-) 99.0 6.7E-10 1.5E-14 112.5 10.0 103 68-170 16-136 (194)
97 PLN02585 magnesium protoporphy 99.0 1.4E-09 3.1E-14 117.8 13.2 110 52-163 128-247 (315)
98 PTZ00146 fibrillarin; Provisio 99.0 1.6E-09 3.5E-14 114.9 13.2 120 45-165 109-236 (293)
99 PRK00312 pcm protein-L-isoaspa 99.0 2.7E-09 5.9E-14 109.4 14.5 135 25-167 38-176 (212)
100 PRK11188 rrmJ 23S rRNA methylt 99.0 4.2E-09 9.2E-14 107.9 15.7 96 67-172 50-171 (209)
101 PRK00517 prmA ribosomal protei 99.0 4.7E-09 1E-13 110.6 16.3 97 67-169 118-216 (250)
102 PRK13942 protein-L-isoaspartat 99.0 2.3E-09 5E-14 110.1 13.5 110 50-166 61-176 (212)
103 COG4106 Tam Trans-aconitate me 99.0 6.4E-10 1.4E-14 110.8 8.7 97 67-167 29-130 (257)
104 COG2813 RsmC 16S RNA G1207 met 99.0 7.9E-09 1.7E-13 109.2 17.3 125 53-180 146-280 (300)
105 PLN02589 caffeoyl-CoA O-methyl 99.0 1.7E-09 3.6E-14 113.2 12.2 110 528-678 78-192 (247)
106 PF06325 PrmA: Ribosomal prote 99.0 4E-09 8.8E-14 112.9 15.2 123 67-191 160-283 (295)
107 PLN03075 nicotianamine synthas 99.0 2.1E-09 4.6E-14 114.4 12.9 150 528-719 122-277 (296)
108 PLN02781 Probable caffeoyl-CoA 99.0 1.9E-09 4.2E-14 112.3 12.4 108 528-677 67-179 (234)
109 TIGR01177 conserved hypothetic 99.0 4.1E-09 9E-14 115.5 15.6 115 53-171 170-299 (329)
110 TIGR00406 prmA ribosomal prote 99.0 3.2E-09 6.8E-14 114.2 14.4 102 67-169 158-262 (288)
111 COG4123 Predicted O-methyltran 99.0 1.2E-08 2.6E-13 105.8 17.9 157 528-720 43-215 (248)
112 COG4123 Predicted O-methyltran 99.0 7.4E-09 1.6E-13 107.3 15.7 152 56-213 35-215 (248)
113 KOG1975 mRNA cap methyltransfe 99.0 1.1E-09 2.5E-14 114.7 9.4 127 67-193 116-264 (389)
114 PRK14121 tRNA (guanine-N(7)-)- 99.0 1.6E-08 3.5E-13 111.5 18.7 106 67-172 121-241 (390)
115 PF03291 Pox_MCEL: mRNA cappin 99.0 1.2E-09 2.7E-14 118.9 9.6 111 68-178 62-198 (331)
116 PF13659 Methyltransf_26: Meth 99.0 5.5E-09 1.2E-13 96.2 12.4 113 531-677 2-115 (117)
117 TIGR03533 L3_gln_methyl protei 99.0 6.4E-09 1.4E-13 111.6 14.6 117 68-184 121-269 (284)
118 PRK05134 bifunctional 3-demeth 99.0 4E-09 8.6E-14 109.6 12.5 101 67-168 47-153 (233)
119 COG2242 CobL Precorrin-6B meth 99.0 2.7E-08 5.8E-13 98.3 16.6 129 51-184 20-153 (187)
120 PRK09328 N5-glutamine S-adenos 98.9 5.1E-09 1.1E-13 111.4 12.5 100 67-166 107-238 (275)
121 TIGR03534 RF_mod_PrmC protein- 98.9 5.2E-09 1.1E-13 109.6 12.1 111 68-178 87-230 (251)
122 PRK14966 unknown domain/N5-glu 98.9 6.5E-09 1.4E-13 115.3 13.3 112 68-179 251-395 (423)
123 KOG1541 Predicted protein carb 98.9 9.2E-09 2E-13 102.8 12.4 97 68-169 50-163 (270)
124 PRK00107 gidB 16S rRNA methylt 98.9 1.7E-08 3.7E-13 101.6 14.1 147 505-706 28-174 (187)
125 TIGR02469 CbiT precorrin-6Y C5 98.9 7.3E-09 1.6E-13 95.9 10.5 105 529-678 19-123 (124)
126 TIGR01983 UbiG ubiquinone bios 98.9 6.7E-09 1.4E-13 107.0 11.2 100 68-168 45-151 (224)
127 PRK11805 N5-glutamine S-adenos 98.9 1.4E-08 3.1E-13 110.0 14.1 98 70-167 135-264 (307)
128 PRK06202 hypothetical protein; 98.9 1E-08 2.2E-13 106.6 12.2 100 67-170 59-170 (232)
129 TIGR00438 rrmJ cell division p 98.9 3.6E-08 7.8E-13 99.2 14.8 94 67-170 31-150 (188)
130 TIGR00536 hemK_fam HemK family 98.9 2E-08 4.4E-13 107.8 13.1 109 70-178 116-257 (284)
131 cd02440 AdoMet_MTases S-adenos 98.9 2E-08 4.2E-13 88.0 10.7 95 71-165 1-103 (107)
132 PF05175 MTS: Methyltransferas 98.9 7E-09 1.5E-13 102.8 8.7 131 529-703 31-161 (170)
133 TIGR03704 PrmC_rel_meth putati 98.8 2.8E-08 6.2E-13 104.7 13.4 118 69-190 87-239 (251)
134 PRK11783 rlmL 23S rRNA m(2)G24 98.8 3.7E-08 8.1E-13 118.1 16.1 141 46-193 522-682 (702)
135 TIGR00091 tRNA (guanine-N(7)-) 98.8 6.9E-08 1.5E-12 97.8 15.6 134 529-696 16-149 (194)
136 TIGR00138 gidB 16S rRNA methyl 98.8 4.6E-08 9.9E-13 98.0 13.9 98 530-678 43-143 (181)
137 PRK00811 spermidine synthase; 98.8 1.7E-08 3.7E-13 108.3 11.5 99 68-166 76-191 (283)
138 TIGR02716 C20_methyl_CrtF C-20 98.8 3.6E-08 7.9E-13 106.9 13.6 100 67-167 148-255 (306)
139 PRK10901 16S rRNA methyltransf 98.8 4.2E-08 9.1E-13 111.3 14.6 102 67-168 243-374 (427)
140 PF07021 MetW: Methionine bios 98.8 2.2E-08 4.8E-13 99.5 10.3 97 56-168 6-110 (193)
141 COG2890 HemK Methylase of poly 98.8 5E-08 1.1E-12 104.3 13.7 111 71-181 113-254 (280)
142 PRK00121 trmB tRNA (guanine-N( 98.8 1.1E-07 2.3E-12 97.1 15.4 131 529-694 40-171 (202)
143 PRK04457 spermidine synthase; 98.8 6.1E-08 1.3E-12 102.8 14.1 103 68-170 66-181 (262)
144 KOG3010 Methyltransferase [Gen 98.8 1.2E-08 2.6E-13 103.6 7.4 98 70-168 35-139 (261)
145 COG2519 GCD14 tRNA(1-methylade 98.8 5.4E-08 1.2E-12 100.3 11.9 119 528-699 93-216 (256)
146 PRK15128 23S rRNA m(5)C1962 me 98.8 7.8E-08 1.7E-12 107.6 14.1 141 46-192 204-370 (396)
147 COG2518 Pcm Protein-L-isoaspar 98.8 5.6E-08 1.2E-12 98.0 11.6 109 51-167 58-170 (209)
148 PHA03411 putative methyltransf 98.8 7.3E-08 1.6E-12 101.4 12.6 95 68-166 64-183 (279)
149 PRK08287 cobalt-precorrin-6Y C 98.7 1.1E-07 2.4E-12 95.6 12.8 117 528-694 30-146 (187)
150 COG2263 Predicted RNA methylas 98.7 7E-08 1.5E-12 95.1 10.5 73 67-139 44-116 (198)
151 PRK13943 protein-L-isoaspartat 98.7 1.3E-07 2.9E-12 102.8 13.8 109 51-166 66-180 (322)
152 PRK00377 cbiT cobalt-precorrin 98.7 3.9E-07 8.4E-12 92.6 15.5 119 528-695 39-161 (198)
153 PF01135 PCMT: Protein-L-isoas 98.7 9.5E-08 2.1E-12 97.7 10.9 111 49-166 56-172 (209)
154 smart00650 rADc Ribosomal RNA 98.7 1.8E-07 4E-12 92.5 12.6 96 67-165 12-112 (169)
155 TIGR02081 metW methionine bios 98.7 1E-07 2.3E-12 96.4 10.7 85 68-158 13-104 (194)
156 COG3963 Phospholipid N-methylt 98.7 5E-07 1.1E-11 87.0 14.4 113 50-169 33-159 (194)
157 COG2242 CobL Precorrin-6B meth 98.7 4.8E-07 1E-11 89.5 14.7 125 528-704 33-161 (187)
158 PF13847 Methyltransf_31: Meth 98.6 8.9E-08 1.9E-12 92.8 8.9 111 529-685 3-118 (152)
159 PRK01581 speE spermidine synth 98.6 7.6E-07 1.6E-11 97.2 16.8 100 68-167 150-269 (374)
160 PRK14904 16S rRNA methyltransf 98.6 3.1E-07 6.6E-12 104.8 14.3 103 67-169 249-380 (445)
161 PRK04148 hypothetical protein; 98.6 4E-07 8.7E-12 86.0 12.6 105 53-170 4-113 (134)
162 PRK07402 precorrin-6B methylas 98.6 3.1E-07 6.8E-12 93.0 12.8 105 529-679 40-144 (196)
163 TIGR00417 speE spermidine synt 98.6 1.9E-07 4.1E-12 99.5 11.5 100 68-167 72-187 (270)
164 TIGR00446 nop2p NOL1/NOP2/sun 98.6 3.4E-07 7.3E-12 97.3 13.2 102 67-168 70-201 (264)
165 PRK14902 16S rRNA methyltransf 98.6 2.8E-07 6.1E-12 105.1 13.4 110 56-168 241-381 (444)
166 TIGR03533 L3_gln_methyl protei 98.6 6E-07 1.3E-11 96.4 15.1 114 529-678 121-252 (284)
167 PLN02366 spermidine synthase 98.6 2.6E-07 5.6E-12 100.0 12.3 99 67-165 90-205 (308)
168 KOG2899 Predicted methyltransf 98.6 1.1E-07 2.3E-12 96.6 8.5 99 68-166 58-209 (288)
169 COG4976 Predicted methyltransf 98.6 1.6E-08 3.4E-13 101.6 2.5 96 67-167 124-226 (287)
170 TIGR00446 nop2p NOL1/NOP2/sun 98.6 9.1E-07 2E-11 94.0 15.9 137 529-700 71-222 (264)
171 PRK14903 16S rRNA methyltransf 98.6 4.2E-07 9.1E-12 103.1 14.2 102 67-168 236-368 (431)
172 PRK14103 trans-aconitate 2-met 98.6 3.3E-07 7.1E-12 96.8 12.5 101 528-679 28-128 (255)
173 TIGR00080 pimt protein-L-isoas 98.6 2.2E-07 4.7E-12 95.7 10.6 102 528-678 76-178 (215)
174 PRK09328 N5-glutamine S-adenos 98.6 7.1E-07 1.5E-11 95.0 14.9 151 528-715 107-274 (275)
175 PHA03412 putative methyltransf 98.6 2.7E-07 5.9E-12 95.1 11.0 90 68-161 49-158 (241)
176 PLN02781 Probable caffeoyl-CoA 98.6 3.7E-07 8.1E-12 95.2 12.2 99 67-166 67-178 (234)
177 TIGR02752 MenG_heptapren 2-hep 98.6 2.4E-06 5.1E-11 88.6 18.1 105 528-675 44-149 (231)
178 PF02390 Methyltransf_4: Putat 98.6 2.5E-07 5.4E-12 93.8 10.4 102 69-170 18-137 (195)
179 PRK03522 rumB 23S rRNA methylu 98.6 6E-07 1.3E-11 97.9 13.8 119 68-191 173-296 (315)
180 PRK13168 rumA 23S rRNA m(5)U19 98.6 7.4E-07 1.6E-11 101.7 15.0 122 67-192 296-425 (443)
181 PRK11036 putative S-adenosyl-L 98.6 5.3E-07 1.2E-11 95.2 12.7 110 528-681 43-153 (255)
182 TIGR00563 rsmB ribosomal RNA s 98.6 5.4E-07 1.2E-11 102.3 13.5 111 55-168 228-370 (426)
183 COG2518 Pcm Protein-L-isoaspar 98.6 2.2E-07 4.7E-12 93.8 9.0 114 501-678 54-170 (209)
184 PLN02232 ubiquinone biosynthes 98.6 1.7E-07 3.6E-12 92.1 8.0 77 95-171 1-86 (160)
185 PRK13942 protein-L-isoaspartat 98.5 3.2E-07 6.9E-12 94.3 10.2 101 529-678 76-177 (212)
186 COG0220 Predicted S-adenosylme 98.5 3.1E-07 6.7E-12 94.9 10.0 112 57-171 40-169 (227)
187 PRK01683 trans-aconitate 2-met 98.5 7.1E-07 1.5E-11 94.2 13.1 103 528-679 30-132 (258)
188 PRK11805 N5-glutamine S-adenos 98.5 9.4E-07 2E-11 95.9 14.2 147 531-717 135-297 (307)
189 PRK15451 tRNA cmo(5)U34 methyl 98.5 1.1E-06 2.5E-11 92.3 14.1 102 528-676 55-163 (247)
190 PRK10909 rsmD 16S rRNA m(2)G96 98.5 5.5E-07 1.2E-11 91.5 11.2 101 68-168 53-161 (199)
191 PRK13944 protein-L-isoaspartat 98.5 6.7E-07 1.4E-11 91.4 11.8 101 529-678 72-174 (205)
192 PRK14901 16S rRNA methyltransf 98.5 7.5E-07 1.6E-11 101.3 13.4 102 67-168 251-386 (434)
193 PRK14903 16S rRNA methyltransf 98.5 1.9E-06 4.2E-11 97.8 16.2 135 529-700 237-389 (431)
194 TIGR00536 hemK_fam HemK family 98.5 2.8E-06 6.1E-11 91.2 16.5 146 531-715 116-281 (284)
195 PRK14121 tRNA (guanine-N(7)-)- 98.5 1.9E-06 4.2E-11 95.3 15.0 131 528-695 121-251 (390)
196 COG2521 Predicted archaeal met 98.5 5E-07 1.1E-11 91.3 9.4 133 528-700 133-274 (287)
197 TIGR03534 RF_mod_PrmC protein- 98.5 1.5E-06 3.2E-11 91.1 13.5 116 529-679 87-219 (251)
198 PLN02233 ubiquinone biosynthes 98.5 1.6E-06 3.5E-11 91.9 13.9 111 528-681 72-186 (261)
199 PRK04266 fibrillarin; Provisio 98.5 3.3E-06 7.3E-11 87.6 15.8 133 529-705 72-212 (226)
200 PRK15001 SAM-dependent 23S rib 98.5 2.8E-06 6.1E-11 94.3 16.1 128 531-702 230-360 (378)
201 TIGR00537 hemK_rel_arch HemK-r 98.5 2.8E-06 6.1E-11 84.8 14.5 147 529-715 19-176 (179)
202 TIGR03704 PrmC_rel_meth putati 98.5 2E-06 4.3E-11 90.7 14.0 126 530-694 87-230 (251)
203 COG2519 GCD14 tRNA(1-methylade 98.5 1.7E-06 3.6E-11 89.4 12.8 118 53-176 82-205 (256)
204 TIGR00740 methyltransferase, p 98.5 3.5E-06 7.7E-11 88.0 15.7 105 529-676 53-160 (239)
205 PRK03612 spermidine synthase; 98.5 5E-07 1.1E-11 104.9 10.1 99 68-166 297-415 (521)
206 PLN02396 hexaprenyldihydroxybe 98.5 9E-07 2E-11 96.4 11.3 108 529-681 131-239 (322)
207 TIGR00479 rumA 23S rRNA (uraci 98.5 1.1E-06 2.3E-11 100.0 12.4 122 67-191 291-420 (431)
208 PRK14902 16S rRNA methyltransf 98.5 2.4E-06 5.3E-11 97.5 15.2 132 529-697 250-399 (444)
209 PF10672 Methyltrans_SAM: S-ad 98.4 9.2E-07 2E-11 94.4 10.7 118 46-169 107-241 (286)
210 PRK01544 bifunctional N5-gluta 98.4 2.4E-06 5.2E-11 98.8 14.7 151 529-718 138-308 (506)
211 PF08241 Methyltransf_11: Meth 98.4 5.3E-07 1.2E-11 78.9 7.2 94 534-675 1-95 (95)
212 TIGR02085 meth_trns_rumB 23S r 98.4 2E-06 4.4E-11 95.9 13.6 120 68-192 233-357 (374)
213 PRK14966 unknown domain/N5-glu 98.4 6.9E-06 1.5E-10 91.5 17.6 150 530-715 252-417 (423)
214 PRK11188 rrmJ 23S rRNA methylt 98.4 3.9E-06 8.5E-11 86.1 14.5 143 529-715 51-205 (209)
215 COG2226 UbiE Methylase involve 98.4 1.8E-06 3.9E-11 89.7 11.9 109 529-680 51-159 (238)
216 PF08704 GCD14: tRNA methyltra 98.4 2.1E-06 4.6E-11 89.8 12.5 124 528-702 39-170 (247)
217 TIGR02072 BioC biotin biosynth 98.4 2E-06 4.2E-11 89.0 12.3 106 528-680 33-138 (240)
218 COG1041 Predicted DNA modifica 98.4 3.5E-06 7.5E-11 91.0 14.2 113 51-167 183-311 (347)
219 KOG2904 Predicted methyltransf 98.4 5.6E-06 1.2E-10 85.7 14.5 116 52-167 132-286 (328)
220 TIGR00563 rsmB ribosomal RNA s 98.4 3.3E-06 7.1E-11 95.9 14.3 136 529-699 238-390 (426)
221 TIGR00755 ksgA dimethyladenosi 98.4 4E-06 8.7E-11 88.5 13.8 119 52-179 16-138 (253)
222 PRK15128 23S rRNA m(5)C1962 me 98.4 4.2E-06 9.2E-11 93.7 14.6 110 530-675 221-337 (396)
223 PRK09489 rsmC 16S ribosomal RN 98.4 5.4E-06 1.2E-10 91.2 15.1 141 530-717 197-337 (342)
224 PLN02672 methionine S-methyltr 98.4 2.5E-06 5.4E-11 104.9 13.6 111 69-179 119-293 (1082)
225 COG2227 UbiG 2-polyprenyl-3-me 98.4 2.5E-06 5.3E-11 87.5 11.1 109 529-683 59-167 (243)
226 TIGR00438 rrmJ cell division p 98.4 7.3E-06 1.6E-10 82.5 14.4 145 528-715 31-186 (188)
227 COG1092 Predicted SAM-dependen 98.4 2E-06 4.3E-11 95.4 11.0 118 46-169 201-339 (393)
228 PF05219 DREV: DREV methyltran 98.4 2.1E-06 4.6E-11 89.1 10.5 91 68-167 94-189 (265)
229 PTZ00098 phosphoethanolamine N 98.4 2.7E-06 5.9E-11 90.3 11.7 107 528-679 51-158 (263)
230 PF01209 Ubie_methyltran: ubiE 98.4 7.1E-07 1.5E-11 93.0 7.0 105 528-676 46-152 (233)
231 PRK14904 16S rRNA methyltransf 98.4 6.2E-06 1.4E-10 94.2 15.3 131 529-698 250-398 (445)
232 PF01135 PCMT: Protein-L-isoas 98.3 1E-06 2.2E-11 90.3 7.8 103 528-679 71-174 (209)
233 PF13649 Methyltransf_25: Meth 98.3 1.3E-06 2.8E-11 78.6 7.7 95 533-671 1-101 (101)
234 PRK00274 ksgA 16S ribosomal RN 98.3 3.9E-06 8.4E-11 89.6 12.6 82 52-139 29-113 (272)
235 PF10294 Methyltransf_16: Puta 98.3 2.2E-06 4.7E-11 85.4 9.9 99 67-166 44-156 (173)
236 PRK10901 16S rRNA methyltransf 98.3 8.8E-06 1.9E-10 92.5 16.1 133 529-695 244-390 (427)
237 PLN02244 tocopherol O-methyltr 98.3 3.2E-06 6.9E-11 93.2 12.1 105 528-678 117-224 (340)
238 PF08242 Methyltransf_12: Meth 98.3 6.8E-08 1.5E-12 86.5 -1.0 99 534-673 1-99 (99)
239 PRK14896 ksgA 16S ribosomal RN 98.3 2.2E-06 4.7E-11 90.8 10.3 84 52-140 16-100 (258)
240 KOG2940 Predicted methyltransf 98.3 2.6E-07 5.6E-12 92.8 3.0 170 69-246 73-248 (325)
241 PF02353 CMAS: Mycolic acid cy 98.3 3.1E-06 6.7E-11 90.3 11.0 106 528-683 61-172 (273)
242 TIGR00406 prmA ribosomal prote 98.3 9.2E-06 2E-10 87.5 14.8 119 529-698 159-278 (288)
243 KOG1499 Protein arginine N-met 98.3 3E-06 6.5E-11 91.1 10.7 95 68-163 60-164 (346)
244 KOG1663 O-methyltransferase [S 98.3 4.9E-06 1.1E-10 84.6 11.5 110 528-677 72-183 (237)
245 PF08704 GCD14: tRNA methyltra 98.3 8E-06 1.7E-10 85.5 13.5 129 50-184 25-164 (247)
246 KOG3191 Predicted N6-DNA-methy 98.3 1.7E-05 3.7E-10 77.7 14.6 121 68-190 43-192 (209)
247 PRK11207 tellurite resistance 98.3 2.8E-06 6.1E-11 86.3 9.7 106 529-678 30-136 (197)
248 TIGR01934 MenG_MenH_UbiE ubiqu 98.3 1.5E-05 3.3E-10 81.6 15.2 103 529-676 39-142 (223)
249 PRK10909 rsmD 16S rRNA m(2)G96 98.3 6.8E-06 1.5E-10 83.6 12.2 105 530-678 54-160 (199)
250 COG2813 RsmC 16S RNA G1207 met 98.3 1.2E-05 2.6E-10 85.4 14.2 126 531-703 160-287 (300)
251 smart00828 PKS_MT Methyltransf 98.3 2.7E-06 5.9E-11 87.7 9.3 103 531-677 1-104 (224)
252 PRK00312 pcm protein-L-isoaspa 98.3 5.8E-06 1.3E-10 84.8 11.4 100 528-678 77-176 (212)
253 PF01739 CheR: CheR methyltran 98.3 4E-06 8.7E-11 85.0 10.0 99 68-166 31-175 (196)
254 TIGR00095 RNA methyltransferas 98.3 4.4E-06 9.6E-11 84.3 10.2 101 68-168 49-161 (189)
255 PF01596 Methyltransf_3: O-met 98.3 3.3E-06 7.1E-11 86.2 9.2 98 68-166 45-155 (205)
256 PLN02476 O-methyltransferase 98.3 7.9E-06 1.7E-10 86.9 12.4 98 67-165 117-227 (278)
257 PTZ00146 fibrillarin; Provisio 98.3 2.3E-05 5E-10 83.6 15.7 141 529-717 132-287 (293)
258 PRK14901 16S rRNA methyltransf 98.2 1.5E-05 3.2E-10 90.9 15.2 137 529-698 252-405 (434)
259 PF05891 Methyltransf_PK: AdoM 98.2 1.1E-05 2.4E-10 82.0 12.3 139 68-209 55-218 (218)
260 PRK00517 prmA ribosomal protei 98.2 1.4E-05 3E-10 84.3 13.7 111 528-695 118-229 (250)
261 PTZ00338 dimethyladenosine tra 98.2 7.1E-06 1.5E-10 88.4 11.6 84 52-139 23-109 (294)
262 KOG3420 Predicted RNA methylas 98.2 2.1E-06 4.6E-11 80.7 5.9 95 45-139 24-122 (185)
263 TIGR00478 tly hemolysin TlyA f 98.2 1.2E-05 2.5E-10 83.4 12.0 88 68-166 75-171 (228)
264 PRK13943 protein-L-isoaspartat 98.2 1E-05 2.2E-10 88.2 12.0 100 529-677 80-180 (322)
265 cd02440 AdoMet_MTases S-adenos 98.2 1.6E-05 3.4E-10 69.4 11.0 103 532-676 1-103 (107)
266 PRK06922 hypothetical protein; 98.2 1.1E-05 2.3E-10 94.0 12.6 115 529-677 418-537 (677)
267 PLN02823 spermine synthase 98.2 1.1E-05 2.4E-10 88.3 12.1 99 68-166 103-220 (336)
268 PF05401 NodS: Nodulation prot 98.2 2.2E-05 4.8E-10 78.5 13.1 141 528-718 42-197 (201)
269 COG2890 HemK Methylase of poly 98.2 1.7E-05 3.6E-10 85.0 13.1 142 532-716 113-276 (280)
270 COG2230 Cfa Cyclopropane fatty 98.2 1.1E-05 2.4E-10 85.4 11.4 123 528-698 71-198 (283)
271 PLN02490 MPBQ/MSBQ methyltrans 98.2 1.3E-05 2.8E-10 87.8 12.1 101 529-675 113-213 (340)
272 PRK14968 putative methyltransf 98.2 2.7E-05 5.8E-10 77.6 13.5 115 529-679 23-150 (188)
273 PRK11873 arsM arsenite S-adeno 98.2 1.2E-05 2.6E-10 85.7 11.6 106 528-676 76-182 (272)
274 PRK08317 hypothetical protein; 98.2 2E-05 4.3E-10 81.3 12.9 105 528-676 18-123 (241)
275 KOG2899 Predicted methyltransf 98.1 9.6E-06 2.1E-10 82.7 9.4 127 528-677 57-209 (288)
276 PF00891 Methyltransf_2: O-met 98.1 1.8E-05 3.8E-10 82.8 11.9 96 67-168 99-201 (241)
277 PF02390 Methyltransf_4: Putat 98.1 1.3E-05 2.8E-10 81.4 10.4 131 531-695 19-149 (195)
278 COG4106 Tam Trans-aconitate me 98.1 1.5E-05 3.2E-10 80.2 10.4 104 528-680 29-132 (257)
279 KOG1540 Ubiquinone biosynthesi 98.1 3.8E-05 8.2E-10 79.1 13.2 112 523-677 94-214 (296)
280 PRK10258 biotin biosynthesis p 98.1 1.9E-05 4.2E-10 83.0 11.7 102 529-680 42-143 (251)
281 COG4122 Predicted O-methyltran 98.1 1.8E-05 4E-10 81.1 11.0 111 52-166 46-166 (219)
282 PF05148 Methyltransf_8: Hypot 98.1 3.2E-05 6.8E-10 78.0 12.3 139 46-212 55-199 (219)
283 PRK00216 ubiE ubiquinone/menaq 98.1 2.1E-05 4.6E-10 81.4 11.6 105 529-676 51-157 (239)
284 PF01170 UPF0020: Putative RNA 98.1 2.1E-05 4.5E-10 78.8 11.1 104 52-158 15-143 (179)
285 COG0421 SpeE Spermidine syntha 98.1 2.7E-05 5.9E-10 83.1 12.6 96 70-165 78-189 (282)
286 PRK10611 chemotaxis methyltran 98.1 3.5E-05 7.5E-10 82.6 13.3 99 68-166 115-262 (287)
287 PRK05031 tRNA (uracil-5-)-meth 98.1 4.9E-05 1.1E-09 84.5 14.8 116 70-191 208-343 (362)
288 PRK14967 putative methyltransf 98.1 1.7E-05 3.8E-10 82.0 10.6 127 530-694 37-174 (223)
289 PF05185 PRMT5: PRMT5 arginine 98.1 1.2E-05 2.7E-10 91.3 10.0 95 69-163 187-294 (448)
290 TIGR02716 C20_methyl_CrtF C-20 98.1 2.4E-05 5.3E-10 84.9 11.6 103 528-676 148-253 (306)
291 TIGR00477 tehB tellurite resis 98.1 2E-05 4.3E-10 80.0 9.9 103 529-676 30-132 (195)
292 smart00650 rADc Ribosomal RNA 98.1 3.4E-05 7.4E-10 76.3 11.4 99 529-677 13-113 (169)
293 TIGR02143 trmA_only tRNA (urac 98.0 6.1E-05 1.3E-09 83.4 14.3 116 70-191 199-334 (353)
294 PRK05134 bifunctional 3-demeth 98.0 6.3E-05 1.4E-09 78.1 13.6 109 528-681 47-155 (233)
295 KOG3045 Predicted RNA methylas 98.0 3.5E-05 7.7E-10 79.2 11.1 129 56-212 170-305 (325)
296 PLN02589 caffeoyl-CoA O-methyl 98.0 3.7E-05 8E-10 80.7 11.5 98 67-165 78-189 (247)
297 PF06325 PrmA: Ribosomal prote 98.0 4.5E-05 9.7E-10 82.1 12.2 132 529-716 161-293 (295)
298 PRK11933 yebU rRNA (cytosine-C 98.0 0.00016 3.4E-09 82.7 17.0 134 528-698 112-263 (470)
299 PRK11705 cyclopropane fatty ac 98.0 7E-05 1.5E-09 83.8 13.7 105 528-680 166-270 (383)
300 PF00891 Methyltransf_2: O-met 98.0 4.3E-05 9.2E-10 79.9 11.3 98 528-676 99-198 (241)
301 TIGR03439 methyl_EasF probable 98.0 0.00011 2.4E-09 80.0 14.6 99 67-165 75-196 (319)
302 PRK11088 rrmA 23S rRNA methylt 98.0 3.7E-05 8.1E-10 82.1 10.9 94 529-677 85-181 (272)
303 PHA03412 putative methyltransf 98.0 4.2E-05 9E-10 79.1 10.4 57 530-591 50-109 (241)
304 COG0220 Predicted S-adenosylme 98.0 0.00011 2.5E-09 76.0 13.6 124 530-687 49-172 (227)
305 PLN02672 methionine S-methyltr 98.0 8.8E-05 1.9E-09 91.6 14.8 121 530-683 119-284 (1082)
306 PHA03411 putative methyltransf 98.0 6.3E-05 1.4E-09 79.5 11.6 110 530-679 65-185 (279)
307 PF06080 DUF938: Protein of un 97.9 4.6E-05 1E-09 77.1 10.1 111 52-166 13-141 (204)
308 smart00138 MeTrc Methyltransfe 97.9 2E-05 4.4E-10 83.8 8.0 45 528-572 98-151 (264)
309 KOG1270 Methyltransferases [Co 97.9 6.8E-06 1.5E-10 84.9 4.1 102 531-680 91-198 (282)
310 TIGR00095 RNA methyltransferas 97.9 0.00013 2.8E-09 73.7 13.4 108 530-678 50-160 (189)
311 TIGR03587 Pse_Me-ase pseudamin 97.9 4.8E-05 1E-09 77.8 10.3 126 528-701 42-178 (204)
312 TIGR01983 UbiG ubiquinone bios 97.9 6.2E-05 1.4E-09 77.5 11.2 108 529-680 45-152 (224)
313 KOG1661 Protein-L-isoaspartate 97.9 4.7E-05 1E-09 76.3 9.6 110 52-166 67-193 (237)
314 TIGR03840 TMPT_Se_Te thiopurin 97.9 3.7E-05 8.1E-10 79.1 9.1 104 529-674 34-149 (213)
315 COG2264 PrmA Ribosomal protein 97.9 0.00013 2.9E-09 78.0 13.4 164 493-715 131-297 (300)
316 PF03602 Cons_hypoth95: Conser 97.9 2E-05 4.2E-10 79.2 6.8 102 68-169 42-156 (183)
317 PF05185 PRMT5: PRMT5 arginine 97.9 3.7E-05 8E-10 87.4 9.7 123 505-674 165-294 (448)
318 COG1092 Predicted SAM-dependen 97.9 8.8E-05 1.9E-09 82.5 12.4 116 530-677 218-336 (393)
319 PRK12335 tellurite resistance 97.9 3.4E-05 7.4E-10 83.0 8.9 101 530-675 121-221 (287)
320 PF01564 Spermine_synth: Sperm 97.9 3.4E-05 7.3E-10 81.2 8.3 99 68-166 76-191 (246)
321 PRK11727 23S rRNA mA1618 methy 97.9 5.6E-05 1.2E-09 82.2 10.0 75 68-142 114-200 (321)
322 TIGR03438 probable methyltrans 97.9 0.00021 4.6E-09 77.4 14.5 113 529-677 63-177 (301)
323 KOG1500 Protein arginine N-met 97.9 5.1E-05 1.1E-09 80.3 9.1 94 68-163 177-279 (517)
324 PRK04338 N(2),N(2)-dimethylgua 97.9 8.5E-05 1.8E-09 83.0 11.3 99 531-676 59-157 (382)
325 PF10672 Methyltrans_SAM: S-ad 97.9 0.00052 1.1E-08 73.5 16.7 125 501-677 108-238 (286)
326 KOG4300 Predicted methyltransf 97.8 5E-05 1.1E-09 75.9 7.7 125 528-699 75-202 (252)
327 PF01269 Fibrillarin: Fibrilla 97.8 0.00021 4.5E-09 72.8 12.2 121 45-166 50-178 (229)
328 PF02384 N6_Mtase: N-6 DNA Met 97.8 0.0004 8.6E-09 75.5 15.3 159 49-213 30-235 (311)
329 PRK05785 hypothetical protein; 97.8 0.00025 5.4E-09 73.7 13.1 90 529-670 51-140 (226)
330 PRK04338 N(2),N(2)-dimethylgua 97.8 0.00011 2.4E-09 82.0 11.1 109 52-165 43-157 (382)
331 PF13489 Methyltransf_23: Meth 97.8 8.8E-05 1.9E-09 71.6 9.1 99 528-681 21-119 (161)
332 PRK13255 thiopurine S-methyltr 97.8 7.7E-05 1.7E-09 77.0 8.8 102 529-672 37-150 (218)
333 PRK03522 rumB 23S rRNA methylu 97.8 0.0002 4.3E-09 78.2 12.4 109 530-687 174-282 (315)
334 TIGR00479 rumA 23S rRNA (uraci 97.8 0.00038 8.3E-09 79.3 15.0 104 529-676 292-395 (431)
335 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.8 0.00024 5.3E-09 74.7 12.2 100 68-167 56-200 (256)
336 PRK15068 tRNA mo(5)U34 methylt 97.8 0.00016 3.5E-09 79.2 11.2 102 529-677 122-226 (322)
337 PRK00536 speE spermidine synth 97.8 0.00028 6.1E-09 74.6 12.6 95 67-166 71-171 (262)
338 PRK06202 hypothetical protein; 97.8 0.00029 6.4E-09 73.2 12.7 110 528-683 59-172 (232)
339 PF07942 N2227: N2227-like pro 97.8 0.00018 4E-09 76.1 11.2 99 67-166 55-202 (270)
340 PF01728 FtsJ: FtsJ-like methy 97.7 2.7E-05 5.9E-10 77.7 4.6 95 68-172 23-145 (181)
341 PF02475 Met_10: Met-10+ like- 97.7 0.0001 2.2E-09 74.9 8.8 95 67-163 100-199 (200)
342 COG0742 N6-adenine-specific me 97.7 0.00047 1E-08 68.9 13.0 102 68-169 43-157 (187)
343 COG1352 CheR Methylase of chem 97.7 0.00032 7E-09 74.4 12.5 99 68-166 96-241 (268)
344 KOG2904 Predicted methyltransf 97.7 0.00063 1.4E-08 70.9 13.9 123 529-680 148-288 (328)
345 PF08123 DOT1: Histone methyla 97.7 0.00042 9.1E-09 70.8 12.5 100 66-165 40-157 (205)
346 PRK13168 rumA 23S rRNA m(5)U19 97.7 0.00042 9.2E-09 79.2 14.0 112 529-687 297-408 (443)
347 PF05958 tRNA_U5-meth_tr: tRNA 97.7 0.00056 1.2E-08 75.8 14.5 128 53-190 185-332 (352)
348 TIGR02021 BchM-ChlM magnesium 97.7 0.00014 3.1E-09 74.8 9.1 102 528-676 54-157 (219)
349 PRK11727 23S rRNA mA1618 methy 97.7 0.00052 1.1E-08 74.7 13.7 59 528-586 113-173 (321)
350 PRK00050 16S rRNA m(4)C1402 me 97.7 0.00012 2.6E-09 78.7 8.8 74 52-129 6-81 (296)
351 COG2265 TrmA SAM-dependent met 97.7 0.00028 6.1E-09 79.9 12.1 126 53-184 281-413 (432)
352 PF12147 Methyltransf_20: Puta 97.7 0.00084 1.8E-08 70.9 14.6 100 67-166 134-249 (311)
353 KOG1709 Guanidinoacetate methy 97.7 0.00055 1.2E-08 68.9 12.4 128 528-705 100-228 (271)
354 PF03602 Cons_hypoth95: Conser 97.7 0.00018 3.9E-09 72.3 9.3 107 530-680 43-156 (183)
355 TIGR00308 TRM1 tRNA(guanine-26 97.7 0.00026 5.6E-09 78.8 11.2 101 530-676 45-146 (374)
356 TIGR02085 meth_trns_rumB 23S r 97.7 0.00033 7.2E-09 78.3 12.2 108 531-687 235-342 (374)
357 TIGR00452 methyltransferase, p 97.7 0.00022 4.8E-09 77.6 10.4 102 529-677 121-225 (314)
358 PF13578 Methyltransf_24: Meth 97.7 3.1E-05 6.6E-10 70.3 3.1 98 534-676 1-104 (106)
359 TIGR01177 conserved hypothetic 97.6 0.00056 1.2E-08 75.1 13.5 110 529-680 182-297 (329)
360 PF03059 NAS: Nicotianamine sy 97.6 0.00017 3.7E-09 76.6 9.0 148 529-718 120-273 (276)
361 COG2521 Predicted archaeal met 97.6 7.7E-05 1.7E-09 75.8 5.9 102 67-168 133-247 (287)
362 PF03848 TehB: Tellurite resis 97.6 0.00017 3.7E-09 72.7 7.9 105 529-678 30-134 (192)
363 TIGR00308 TRM1 tRNA(guanine-26 97.6 0.00019 4E-09 80.0 9.0 96 69-166 45-147 (374)
364 PRK11933 yebU rRNA (cytosine-C 97.6 0.00039 8.4E-09 79.6 11.8 102 67-168 112-244 (470)
365 KOG0820 Ribosomal RNA adenine 97.6 0.00027 5.9E-09 73.5 9.3 74 65-139 55-131 (315)
366 PF04816 DUF633: Family of unk 97.6 0.0011 2.4E-08 67.8 13.6 136 72-213 1-142 (205)
367 COG0500 SmtA SAM-dependent met 97.6 0.00066 1.4E-08 62.4 11.2 97 72-170 52-159 (257)
368 PF00398 RrnaAD: Ribosomal RNA 97.5 0.001 2.2E-08 70.8 13.2 122 50-178 15-142 (262)
369 COG1889 NOP1 Fibrillarin-like 97.5 0.0011 2.3E-08 66.4 12.0 120 45-165 53-179 (231)
370 TIGR02143 trmA_only tRNA (urac 97.5 0.0013 2.9E-08 72.8 14.3 126 531-693 199-324 (353)
371 COG0030 KsgA Dimethyladenosine 97.5 0.00046 1E-08 72.5 9.9 82 53-139 18-103 (259)
372 COG2520 Predicted methyltransf 97.5 0.0018 4E-08 70.7 14.4 103 68-172 188-295 (341)
373 COG0116 Predicted N6-adenine-s 97.5 0.001 2.2E-08 73.2 12.1 112 53-167 179-345 (381)
374 PTZ00338 dimethyladenosine tra 97.5 0.00087 1.9E-08 72.4 11.6 61 529-591 36-97 (294)
375 PF05891 Methyltransf_PK: AdoM 97.5 0.00033 7.1E-09 71.4 7.6 106 528-680 54-166 (218)
376 COG3963 Phospholipid N-methylt 97.4 0.0016 3.4E-08 63.4 11.7 111 528-679 47-158 (194)
377 KOG1331 Predicted methyltransf 97.4 0.00023 4.9E-09 74.8 6.4 126 28-169 11-146 (293)
378 PRK05031 tRNA (uracil-5-)-meth 97.4 0.001 2.2E-08 74.1 11.9 127 531-694 208-334 (362)
379 PLN02585 magnesium protoporphy 97.4 0.0011 2.4E-08 72.2 11.8 59 529-589 144-207 (315)
380 COG0293 FtsJ 23S rRNA methylas 97.4 0.0023 4.9E-08 65.0 13.0 94 67-170 44-163 (205)
381 KOG1271 Methyltransferases [Ge 97.4 0.00089 1.9E-08 65.8 9.6 130 529-703 67-205 (227)
382 COG4976 Predicted methyltransf 97.4 0.00012 2.6E-09 74.3 3.5 105 527-680 123-228 (287)
383 PF07021 MetW: Methionine bios 97.4 0.00057 1.2E-08 68.4 7.8 60 529-596 13-72 (193)
384 COG0030 KsgA Dimethyladenosine 97.3 0.00044 9.6E-09 72.6 7.4 58 530-591 31-88 (259)
385 COG2263 Predicted RNA methylas 97.3 0.0012 2.7E-08 65.5 10.0 92 530-667 46-137 (198)
386 PRK07580 Mg-protoporphyrin IX 97.3 0.0011 2.3E-08 68.5 10.2 57 529-587 63-120 (230)
387 KOG3010 Methyltransferase [Gen 97.3 0.00051 1.1E-08 70.5 7.4 104 529-679 33-139 (261)
388 KOG2915 tRNA(1-methyladenosine 97.3 0.0023 5.1E-08 66.7 11.6 125 54-184 94-228 (314)
389 PRK01747 mnmC bifunctional tRN 97.3 0.0015 3.3E-08 78.5 11.6 108 528-674 56-203 (662)
390 TIGR02987 met_A_Alw26 type II 97.3 0.0017 3.7E-08 75.9 11.7 72 68-139 31-120 (524)
391 KOG1663 O-methyltransferase [S 97.2 0.002 4.2E-08 66.0 10.4 98 68-166 73-183 (237)
392 KOG3191 Predicted N6-DNA-methy 97.2 0.0038 8.2E-08 61.6 11.8 123 529-694 43-183 (209)
393 PF05430 Methyltransf_30: S-ad 97.2 0.0021 4.6E-08 60.4 9.7 94 578-716 30-123 (124)
394 KOG1661 Protein-L-isoaspartate 97.2 0.0013 2.7E-08 66.3 8.2 101 529-678 82-194 (237)
395 KOG3987 Uncharacterized conser 97.2 6.9E-05 1.5E-09 74.6 -0.7 92 69-166 113-207 (288)
396 PF01269 Fibrillarin: Fibrilla 97.2 0.0028 6E-08 64.8 10.6 140 528-715 72-226 (229)
397 PF03059 NAS: Nicotianamine sy 97.2 0.0061 1.3E-07 64.9 13.5 125 43-167 95-231 (276)
398 COG3897 Predicted methyltransf 97.2 0.0021 4.6E-08 64.0 9.3 105 68-173 79-186 (218)
399 KOG1269 SAM-dependent methyltr 97.1 0.00055 1.2E-08 75.7 5.8 101 67-167 109-216 (364)
400 COG0742 N6-adenine-specific me 97.1 0.0043 9.3E-08 62.1 11.5 109 529-678 43-155 (187)
401 PF03141 Methyltransf_29: Puta 97.1 0.00022 4.7E-09 80.3 2.4 93 70-166 119-219 (506)
402 PF01728 FtsJ: FtsJ-like methy 97.1 0.00092 2E-08 66.7 6.8 142 528-713 22-176 (181)
403 PF06962 rRNA_methylase: Putat 97.1 0.0062 1.3E-07 58.2 11.8 114 93-210 1-140 (140)
404 PRK00274 ksgA 16S ribosomal RN 97.1 0.0011 2.4E-08 70.8 7.6 58 529-591 42-99 (272)
405 PF09445 Methyltransf_15: RNA 97.1 0.0007 1.5E-08 66.5 5.4 68 71-139 2-77 (163)
406 PLN02232 ubiquinone biosynthes 97.1 0.0028 6E-08 62.2 9.7 82 557-681 1-85 (160)
407 PRK00050 16S rRNA m(4)C1402 me 97.1 0.0026 5.7E-08 68.5 9.9 65 530-596 20-85 (296)
408 TIGR02081 metW methionine bios 97.0 0.0021 4.5E-08 65.0 8.2 55 529-591 13-67 (194)
409 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.0 0.0096 2.1E-07 64.0 13.7 160 500-703 65-245 (283)
410 PF10294 Methyltransf_16: Puta 97.0 0.004 8.6E-08 62.0 10.0 124 528-694 44-172 (173)
411 COG0144 Sun tRNA and rRNA cyto 97.0 0.0074 1.6E-07 67.0 13.1 103 66-168 154-290 (355)
412 KOG0820 Ribosomal RNA adenine 97.0 0.0033 7.1E-08 65.6 9.4 61 528-590 57-118 (315)
413 COG0144 Sun tRNA and rRNA cyto 97.0 0.012 2.7E-07 65.2 14.7 137 528-699 155-310 (355)
414 PF09243 Rsm22: Mitochondrial 97.0 0.0058 1.3E-07 65.4 11.6 121 48-171 13-144 (274)
415 PRK13256 thiopurine S-methyltr 97.0 0.0034 7.3E-08 65.1 9.2 135 529-703 43-193 (226)
416 KOG2915 tRNA(1-methyladenosine 96.9 0.01 2.2E-07 62.1 12.4 136 528-712 104-245 (314)
417 PF13679 Methyltransf_32: Meth 96.9 0.0065 1.4E-07 58.3 10.5 95 67-164 24-129 (141)
418 PF02527 GidB: rRNA small subu 96.9 0.034 7.5E-07 55.9 15.8 118 506-680 31-151 (184)
419 COG0357 GidB Predicted S-adeno 96.9 0.0056 1.2E-07 62.8 10.1 96 69-167 68-169 (215)
420 PF02475 Met_10: Met-10+ like- 96.9 0.0021 4.6E-08 65.4 7.0 99 528-674 100-199 (200)
421 PRK14896 ksgA 16S ribosomal RN 96.9 0.0022 4.7E-08 68.1 7.3 59 529-591 29-87 (258)
422 COG4076 Predicted RNA methylas 96.8 0.0022 4.7E-08 63.3 6.2 59 531-591 34-92 (252)
423 COG4262 Predicted spermidine s 96.8 0.004 8.8E-08 67.2 8.6 99 68-166 289-407 (508)
424 TIGR00755 ksgA dimethyladenosi 96.8 0.0029 6.3E-08 66.8 7.6 59 529-591 29-87 (253)
425 PF05724 TPMT: Thiopurine S-me 96.8 0.0051 1.1E-07 63.6 9.2 134 528-703 36-186 (218)
426 PF02527 GidB: rRNA small subu 96.8 0.011 2.5E-07 59.4 11.4 95 71-167 51-149 (184)
427 KOG3178 Hydroxyindole-O-methyl 96.8 0.0045 9.7E-08 67.1 8.8 96 69-168 178-277 (342)
428 KOG2730 Methylase [General fun 96.8 0.003 6.5E-08 64.0 6.7 71 68-139 94-173 (263)
429 PF09445 Methyltransf_15: RNA 96.6 0.005 1.1E-07 60.5 6.9 61 532-596 2-65 (163)
430 PF01739 CheR: CheR methyltran 96.5 0.0065 1.4E-07 61.7 7.4 45 528-572 30-83 (196)
431 KOG1541 Predicted protein carb 96.5 0.015 3.2E-07 59.2 9.6 135 528-705 49-189 (270)
432 PF00398 RrnaAD: Ribosomal RNA 96.5 0.0042 9.1E-08 66.0 5.8 59 529-591 30-88 (262)
433 COG2384 Predicted SAM-dependen 96.4 0.074 1.6E-06 54.3 14.2 145 57-212 10-160 (226)
434 TIGR01444 fkbM_fam methyltrans 96.3 0.01 2.2E-07 56.5 7.2 64 71-134 1-66 (143)
435 PRK11760 putative 23S rRNA C24 96.3 0.017 3.6E-07 63.0 9.5 84 67-159 210-296 (357)
436 KOG1709 Guanidinoacetate methy 96.3 0.036 7.9E-07 56.1 11.1 100 67-166 100-206 (271)
437 PF11968 DUF3321: Putative met 96.3 0.02 4.3E-07 58.5 9.4 84 69-168 52-151 (219)
438 KOG2187 tRNA uracil-5-methyltr 96.3 0.016 3.5E-07 65.6 9.0 73 53-129 371-444 (534)
439 COG4076 Predicted RNA methylas 96.2 0.0098 2.1E-07 58.8 6.3 95 68-163 32-132 (252)
440 PF13578 Methyltransf_24: Meth 96.1 0.005 1.1E-07 55.7 3.6 91 73-165 1-104 (106)
441 PF01189 Nol1_Nop2_Fmu: NOL1/N 96.1 0.026 5.6E-07 60.7 9.7 102 67-168 84-221 (283)
442 KOG2798 Putative trehalase [Ca 96.1 0.032 6.9E-07 59.5 9.7 97 68-166 150-296 (369)
443 KOG3115 Methyltransferase-like 96.0 0.025 5.4E-07 56.8 8.2 100 68-167 60-184 (249)
444 PRK10611 chemotaxis methyltran 96.0 0.0089 1.9E-07 64.2 5.3 44 529-572 115-166 (287)
445 COG0275 Predicted S-adenosylme 96.0 0.063 1.4E-06 57.3 11.5 70 59-128 14-85 (314)
446 KOG1500 Protein arginine N-met 96.0 0.034 7.3E-07 59.6 9.2 99 529-674 177-279 (517)
447 COG1189 Predicted rRNA methyla 96.0 0.032 7E-07 57.6 8.9 95 67-166 78-178 (245)
448 KOG1499 Protein arginine N-met 95.9 0.02 4.4E-07 62.1 7.5 59 529-591 60-121 (346)
449 PF08003 Methyltransf_9: Prote 95.8 0.038 8.2E-07 59.2 9.1 102 529-677 115-219 (315)
450 KOG4589 Cell division protein 95.8 0.098 2.1E-06 52.0 11.1 95 66-170 67-188 (232)
451 KOG1596 Fibrillarin and relate 95.8 0.034 7.3E-07 57.2 8.1 121 46-167 134-262 (317)
452 PF05219 DREV: DREV methyltran 95.7 0.079 1.7E-06 55.6 10.7 96 529-678 94-189 (265)
453 COG0357 GidB Predicted S-adeno 95.7 0.23 5E-06 51.1 13.9 143 506-706 50-200 (215)
454 COG1352 CheR Methylase of chem 95.7 0.054 1.2E-06 57.6 9.5 44 529-572 96-148 (268)
455 PRK10742 putative methyltransf 95.6 0.082 1.8E-06 55.4 10.4 91 495-596 55-162 (250)
456 TIGR00006 S-adenosyl-methyltra 95.6 0.051 1.1E-06 58.8 9.1 74 51-127 6-80 (305)
457 COG1889 NOP1 Fibrillarin-like 95.6 0.23 5.1E-06 50.1 12.8 121 528-696 75-206 (231)
458 PF04672 Methyltransf_19: S-ad 95.5 0.057 1.2E-06 57.1 8.9 99 70-169 70-193 (267)
459 PRK04148 hypothetical protein; 95.5 0.044 9.6E-07 52.1 7.2 54 528-590 15-69 (134)
460 PF12147 Methyltransf_20: Puta 95.5 0.21 4.6E-06 53.2 12.8 144 497-684 99-256 (311)
461 KOG1562 Spermidine synthase [A 95.4 0.081 1.8E-06 56.1 9.4 100 67-166 120-236 (337)
462 KOG3178 Hydroxyindole-O-methyl 95.3 0.033 7.2E-07 60.5 6.7 96 530-680 178-280 (342)
463 TIGR00006 S-adenosyl-methyltra 95.2 0.1 2.2E-06 56.6 9.7 65 531-596 22-86 (305)
464 PRK10742 putative methyltransf 95.1 0.065 1.4E-06 56.1 7.8 75 67-142 85-175 (250)
465 PF03291 Pox_MCEL: mRNA cappin 95.1 0.085 1.9E-06 58.0 9.1 146 529-718 62-237 (331)
466 KOG0822 Protein kinase inhibit 95.0 0.066 1.4E-06 60.7 7.9 152 505-703 347-511 (649)
467 KOG0024 Sorbitol dehydrogenase 94.9 0.15 3.3E-06 54.9 9.9 48 528-576 168-216 (354)
468 TIGR02987 met_A_Alw26 type II 94.9 0.081 1.8E-06 62.0 8.6 63 529-591 31-101 (524)
469 PF05971 Methyltransf_10: Prot 94.8 0.073 1.6E-06 57.4 7.4 75 69-144 103-190 (299)
470 COG2265 TrmA SAM-dependent met 94.8 0.29 6.2E-06 55.8 12.6 114 528-688 292-405 (432)
471 COG1063 Tdh Threonine dehydrog 94.8 0.23 4.9E-06 55.1 11.6 100 532-680 171-272 (350)
472 PF01861 DUF43: Protein of unk 94.8 0.15 3.3E-06 52.9 9.4 105 529-681 44-153 (243)
473 COG0293 FtsJ 23S rRNA methylas 94.7 0.24 5.2E-06 50.5 10.4 132 529-705 45-185 (205)
474 KOG4589 Cell division protein 94.6 0.97 2.1E-05 45.2 13.9 146 529-718 69-227 (232)
475 COG2520 Predicted methyltransf 94.6 0.26 5.6E-06 54.1 11.1 120 529-696 188-308 (341)
476 KOG2730 Methylase [General fun 94.5 0.1 2.2E-06 53.3 7.0 54 537-596 104-160 (263)
477 PF01861 DUF43: Protein of unk 94.5 0.35 7.5E-06 50.4 11.2 101 68-169 44-151 (243)
478 TIGR01444 fkbM_fam methyltrans 94.5 0.088 1.9E-06 50.0 6.4 55 533-587 2-56 (143)
479 PF04989 CmcI: Cephalosporin h 94.4 0.12 2.5E-06 52.8 7.4 100 68-167 32-148 (206)
480 KOG3201 Uncharacterized conser 94.4 0.069 1.5E-06 51.9 5.4 112 68-179 29-153 (201)
481 PF05958 tRNA_U5-meth_tr: tRNA 94.1 0.2 4.3E-06 55.7 9.1 129 531-696 198-326 (352)
482 PF04989 CmcI: Cephalosporin h 93.9 0.13 2.8E-06 52.4 6.6 108 528-675 31-145 (206)
483 TIGR00478 tly hemolysin TlyA f 93.8 0.15 3.3E-06 53.1 7.0 39 529-568 75-113 (228)
484 PF11599 AviRa: RRNA methyltra 93.8 0.47 1E-05 48.4 10.1 113 56-169 39-216 (246)
485 COG0275 Predicted S-adenosylme 93.7 0.31 6.7E-06 52.2 9.0 64 531-595 25-89 (314)
486 PF04816 DUF633: Family of unk 93.7 1.1 2.3E-05 46.0 12.8 99 533-678 1-102 (205)
487 cd00315 Cyt_C5_DNA_methylase C 93.6 0.25 5.4E-06 52.9 8.5 64 71-139 2-70 (275)
488 PF07091 FmrO: Ribosomal RNA m 93.6 0.18 4E-06 52.7 7.1 125 67-193 104-246 (251)
489 COG0286 HsdM Type I restrictio 93.6 1.5 3.2E-05 51.0 15.3 181 28-215 150-380 (489)
490 KOG2361 Predicted methyltransf 93.6 0.11 2.4E-06 53.7 5.4 112 531-680 73-186 (264)
491 KOG1122 tRNA and rRNA cytosine 93.4 0.5 1.1E-05 52.6 10.4 105 64-168 237-373 (460)
492 PF06080 DUF938: Protein of un 93.4 0.19 4.2E-06 51.2 6.6 108 532-676 28-140 (204)
493 PF09243 Rsm22: Mitochondrial 93.3 0.64 1.4E-05 49.8 10.9 47 527-573 31-78 (274)
494 COG5459 Predicted rRNA methyla 93.3 0.11 2.3E-06 56.3 4.8 105 68-172 113-231 (484)
495 PRK11760 putative 23S rRNA C24 93.1 0.58 1.2E-05 51.3 10.2 96 528-679 210-307 (357)
496 PF07757 AdoMet_MTase: Predict 92.8 0.16 3.4E-06 46.2 4.5 32 67-99 57-88 (112)
497 PF02005 TRM: N2,N2-dimethylgu 92.8 0.46 1E-05 53.2 9.3 102 529-677 49-154 (377)
498 PF02384 N6_Mtase: N-6 DNA Met 92.8 0.17 3.7E-06 54.9 5.7 119 528-677 45-183 (311)
499 PF04672 Methyltransf_19: S-ad 92.7 0.58 1.3E-05 49.7 9.3 123 529-682 68-195 (267)
500 PF08123 DOT1: Histone methyla 92.2 1.3 2.7E-05 45.5 10.9 61 529-590 42-112 (205)
No 1
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.6e-63 Score=540.07 Aligned_cols=442 Identities=41% Similarity=0.627 Sum_probs=393.4
Q ss_pred ccccccCCCCHHHHHHHHhhcCCCCccccccchhhhHHHHHHhhcCCCCCCCC-eEEEECCCcchhHHHHHHhCCCeEEE
Q 004354 18 LLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPP-QILVPGCGNSRLSEHLYDAGFHGITN 96 (759)
Q Consensus 18 lP~~~~~f~~~~yWd~~y~~~~~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~-~ILDlGCG~G~ls~~L~~~G~~~Vtg 96 (759)
+|.+..+|.+..||++||..++ ...+|||+.|..++..|..++. +.. ++|.+|||++.+++++++.||++|+.
T Consensus 3 ~p~~~~~~~s~~~wd~rf~~rg-~~~~ewY~~~l~l~~~i~~~~~-----p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~ 76 (482)
T KOG2352|consen 3 LPQEQLSFGSVVYWDKRFQPRG-SDPFEWYGALLSLSGSIMKYLS-----PSDFKILQLGCGNSELSEHLYKNGFEDITN 76 (482)
T ss_pred CcccccccCcchhhhhhccccC-CChHHHHHHHHHHHHHHHHhhc-----hhhceeEeecCCCCHHHHHHHhcCCCCcee
Confidence 7999999999999999999886 6889999999999999999985 345 99999999999999999999999999
Q ss_pred EeCCHHHHHHHHHHhccCCCCcEEEEeecccCC------------CcccEEEeCCCChh---HHHHHHHHHHHhcccCcE
Q 004354 97 VDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ------------GGLDALMEPELGHK---LGNQYLSEVKRLLKSGGK 161 (759)
Q Consensus 97 IDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~------------gtfD~Ii~~~~~~~---~~~~~l~ei~rvLkpGG~ 161 (759)
+|+|+.+++.|..+.....+.+.|..+|+..+. |++|+.++.+...+ ....++.+++|+|++||+
T Consensus 77 iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk 156 (482)
T KOG2352|consen 77 IDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGK 156 (482)
T ss_pred ccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCE
Confidence 999999999999988777888999999998876 55555555554444 477888888888888888
Q ss_pred EEEEEcCchhhhhhhccccCCCceEEEEEeCCCCCCCCCceEEEEEEEeCCCccccceeeecCCCCCccCccchhhHHHH
Q 004354 162 FVCLTLAESHVLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVADKENSSVVLQVTSSFDHSSLDCNKNQAFGIHEA 241 (759)
Q Consensus 162 liiit~~~~~~~~~l~~~~~~~w~v~~~~~~~~~~~~~~~~~f~~v~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (759)
++.+++.+
T Consensus 157 ~~svtl~~------------------------------------------------------------------------ 164 (482)
T KOG2352|consen 157 YISVTLVQ------------------------------------------------------------------------ 164 (482)
T ss_pred EEEEEeee------------------------------------------------------------------------
Confidence 88887654
Q ss_pred HHhhhhHhhhhcCCCccchhhhhhhccccccccccCCCceeEEEeCCCCCceeeEEEEEEeCCCCCCCCcccEEEEEeeC
Q 004354 242 LESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELILGGEGDFCFSYRAVLLDARENSGPFMYNCGVFIVPK 321 (759)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~~v~D~~~~~~~~~~~~a~fiVP~ 321 (759)
+||+
T Consensus 165 ----------------------------------------------------------------------------~vp~ 168 (482)
T KOG2352|consen 165 ----------------------------------------------------------------------------VVPQ 168 (482)
T ss_pred ----------------------------------------------------------------------------eccC
Confidence 8999
Q ss_pred CCccccccCChhhHHHHHHhcCCCEEEEEEeCCCCCCCc--hHHHHHhhhHHHHhcCCCCCCCCCCccEEecCCCceeee
Q 004354 322 TRAHEWLFSSEEGQWLVVESSKAARLIMVLLDTSHASAS--MDEIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRN 399 (759)
Q Consensus 322 gre~ewlfst~~G~~~l~~sa~~~RLi~v~l~~~~~~~~--~~~v~~el~~~v~~l~P~~~~~~~~ip~l~~~~~i~~r~ 399 (759)
||+++|+|+++.|++++..+++..||++|.+++++.|.. +++++..+++.+..+.|+++++..+.|+++.|+++
T Consensus 169 ~r~~e~~~~~p~G~~~~~~~s~~~~l~~v~l~~gq~~~~~~~~~~~~~~s~~~~~l~~~g~~~~~q~~~ls~g~d~---- 244 (482)
T KOG2352|consen 169 GRKPEWLFGSPGGSKQMNVSSSGERLAIVALHRGQQYSTPQEDEVQDPLSPFRRQLDPKGEPTQQQREILSIGEDV---- 244 (482)
T ss_pred CCCeeeeecCccchhhhhhhccCcceEEEEeccCccccchHHhhhccccccceeecccccCChhhhhccccccccc----
Confidence 999999999999999999999999999999999999998 89999999999999999999888899999877553
Q ss_pred EEEEEecCCccCEEEEEeecccCCCCccccCCCCCceeeeEEecCCCCceecceEeeccCCCCCcchhhhhhhccccccc
Q 004354 400 VVHQATSSLTGPIIVEDLVYENVDPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALLMRDGSSHRTDVETERKKASSSSKS 479 (759)
Q Consensus 400 ~~~~~~s~~~G~~~Vedv~~e~~~~~~~~~~~~~~~~~RrLiF~~~~~~vQSe~~l~~~~~~~~~~~~~~~~~~~~~~~~ 479 (759)
..|||.+..|.|++|||++..
T Consensus 245 ------------------------------------~~~~l~~~~n~nv~q~~~k~~----------------------- 265 (482)
T KOG2352|consen 245 ------------------------------------GVRRLPPCGNMNVVQSEAKKD----------------------- 265 (482)
T ss_pred ------------------------------------ccccccCCCCcceecCchhcc-----------------------
Confidence 356666666999999996110
Q ss_pred cccCcccCCCCCCcceeecCCccchHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEE
Q 004354 480 KRKGTQRRSDDSGNQLKVYHGYLASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAV 559 (759)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~d~~~L~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~V 559 (759)
...+|+|+||+.|+++++|+..... ...+...++||+|+|||.||+||+.++|...+++|
T Consensus 266 ------------------r~~~l~s~~h~~m~~g~aL~~n~~~--~~~~~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~v 325 (482)
T KOG2352|consen 266 ------------------RKPELASQYHQMMIGGLALIMNRPP--QKLDTGGKQLVVGLGGGGLPSFLHMSLPKFQITAV 325 (482)
T ss_pred ------------------cCcccCcchhhhhhccceeccccCc--hhccccCcEEEEecCCCccccceeeecCccceeEE
Confidence 0128999999999999999876543 23366789999999999999999999999999999
Q ss_pred EcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCC
Q 004354 560 ELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVD 639 (759)
Q Consensus 560 EiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~ 639 (759)
|+||+|+++|+.||||..+.|.+||++||++|+++..+. ...+.+||+|++|+|
T Consensus 326 e~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~--------------------------~~~~~~~dvl~~dvd 379 (482)
T KOG2352|consen 326 EIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKS--------------------------QQEDICPDVLMVDVD 379 (482)
T ss_pred EEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhc--------------------------cccccCCcEEEEECC
Confidence 999999999999999998889999999999999998731 123578999999999
Q ss_pred CCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChhHHHHHHHHHHHhcCceEEEeecCCccEEEEEecCCC
Q 004354 640 SPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVISRMKMVFNHLFCLQLEEDVNLVLFGLSSES 719 (759)
Q Consensus 640 s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l~~vF~~v~~~~~~~~~N~Vl~a~~~~~ 719 (759)
++| +.||+|||+.|++..+|..++..|.|.|+|++|+++|+..+++++...|+++|+++|.+++++++|.|++|..++.
T Consensus 380 s~d-~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~~~~~~~~~~~l~~vf~~l~~~~~~~~~N~il~~~~~~~ 458 (482)
T KOG2352|consen 380 SKD-SHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRNSSFKDEVLMNLAKVFPQLYHHQLEEDVNEILIGQMPPK 458 (482)
T ss_pred CCC-cccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCCcchhHHHHHhhhhhhHHHhhhhccCCCceeEEeecChh
Confidence 999 8999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCCC
Q 004354 720 CIKD 723 (759)
Q Consensus 720 ~~~~ 723 (759)
....
T Consensus 459 ~~~~ 462 (482)
T KOG2352|consen 459 QKPG 462 (482)
T ss_pred cCch
Confidence 4433
No 2
>PRK04457 spermidine synthase; Provisional
Probab=99.97 E-value=3.4e-29 Score=264.32 Aligned_cols=223 Identities=21% Similarity=0.322 Sum_probs=190.5
Q ss_pred eeeeEEecCCCCceecceEeeccCCCCCcchhhhhhhccccccccccCcccCCCCCCcceeecCCccchHHHHHHHHHHh
Q 004354 436 KFRRLVFQRTQGLVQSEALLMRDGSSHRTDVETERKKASSSSKSKRKGTQRRSDDSGNQLKVYHGYLASSYHMGIISGFT 515 (759)
Q Consensus 436 ~~RrLiF~~~~~~vQSe~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~~~Y~~~m~~~l~ 515 (759)
-+|.|.| +.+.+||.+.+. ||..|.++|+++|++++.
T Consensus 26 ~~R~L~f--~~~~~qs~~~~~-----------------------------------------~P~~l~~~y~~~m~~~l~ 62 (262)
T PRK04457 26 GVRSLHL--GSDTVQSSMRID-----------------------------------------DPSELELAYTRAMMGFLL 62 (262)
T ss_pred CEEEEEE--CCCcceeeeecC-----------------------------------------CcccccCHHHHHHHHHHh
Confidence 4999999 556999987664 366788999999997765
Q ss_pred hhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCC-CCCeEEEEccHHHHHHh
Q 004354 516 LISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ-DKSLKVHITDGIKFVRE 594 (759)
Q Consensus 516 l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~-~~rl~v~i~Da~~~l~~ 594 (759)
+. +.+.+||+||+|+|+++.+++..+|..+|++||+||+|+++|+++|+++. ++|++++++||.+|+.+
T Consensus 63 ~~----------~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~ 132 (262)
T PRK04457 63 FN----------PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAV 132 (262)
T ss_pred cC----------CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHh
Confidence 42 45689999999999999999999999999999999999999999998864 58999999999999976
Q ss_pred hcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEE
Q 004354 595 MKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFI 674 (759)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv 674 (759)
.. .+||+|++|++++. .+|..+.+.+|++.++++|+|||+|+
T Consensus 133 ~~--------------------------------~~yD~I~~D~~~~~------~~~~~l~t~efl~~~~~~L~pgGvlv 174 (262)
T PRK04457 133 HR--------------------------------HSTDVILVDGFDGE------GIIDALCTQPFFDDCRNALSSDGIFV 174 (262)
T ss_pred CC--------------------------------CCCCEEEEeCCCCC------CCccccCcHHHHHHHHHhcCCCcEEE
Confidence 43 57999999987653 14778899999999999999999999
Q ss_pred EEecCCChhHHHHHHHHHHHhcCc-eEEEeecCCccEEEEEecC-CCCCCCCcHHHHHHHHhhhcCCCchhHHHHHHH
Q 004354 675 VNLVSRSQATKDMVISRMKMVFNH-LFCLQLEEDVNLVLFGLSS-ESCIKDNSFPEAAVQLGKLVKFQHLEISQSIMD 750 (759)
Q Consensus 675 ~N~~~~~~~~~~~v~~~l~~vF~~-v~~~~~~~~~N~Vl~a~~~-~~~~~~~~l~~~a~~l~~~~~~~~~~~~~~~~~ 750 (759)
+|++.++... ..++++++++|++ ++.++..++.|.|++|++. +.......|.++|+.|++.++++-..+.+.+..
T Consensus 175 in~~~~~~~~-~~~l~~l~~~F~~~~~~~~~~~~~N~v~~a~~~~~~~~~~~~l~~~a~~l~~~~~~~~~~~~~~~~~ 251 (262)
T PRK04457 175 VNLWSRDKRY-DRYLERLESSFEGRVLELPAESHGNVAVFAFKSAPKELRWDKLRKRAKKLENEHGLDFHRFVAKLKA 251 (262)
T ss_pred EEcCCCchhH-HHHHHHHHHhcCCcEEEEecCCCccEEEEEECCCCCCcCHHHHHHHHHHHHHHhCCCHHHHHHHHhh
Confidence 9999877654 5679999999985 7888888889999999885 445666779999999999999997777776643
No 3
>PLN02823 spermine synthase
Probab=99.92 E-value=1.5e-23 Score=227.48 Aligned_cols=182 Identities=15% Similarity=0.225 Sum_probs=143.3
Q ss_pred hHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC----CCC
Q 004354 504 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT----QDK 579 (759)
Q Consensus 504 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~----~~~ 579 (759)
+.||+.|+ +++++.+ +++++||+||+|+|++++.+..+.+..+|++|||||+|+++|++||++. .++
T Consensus 87 ~~YhE~l~-h~~l~~~--------~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dp 157 (336)
T PLN02823 87 FVYHESLV-HPALLHH--------PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDK 157 (336)
T ss_pred HHHHHHHH-hHHHhhC--------CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCC
Confidence 45988655 4445444 5788999999999999998888876779999999999999999999764 479
Q ss_pred CeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHH
Q 004354 580 SLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSF 659 (759)
Q Consensus 580 rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~f 659 (759)
|++++++||++||++.. .+||+||+|+.++ .. .+|+..|++.+|
T Consensus 158 rv~v~~~Da~~~L~~~~--------------------------------~~yDvIi~D~~dp--~~--~~~~~~Lyt~eF 201 (336)
T PLN02823 158 RLELIINDARAELEKRD--------------------------------EKFDVIIGDLADP--VE--GGPCYQLYTKSF 201 (336)
T ss_pred ceEEEEChhHHHHhhCC--------------------------------CCccEEEecCCCc--cc--cCcchhhccHHH
Confidence 99999999999996542 6799999998543 22 135788999999
Q ss_pred HH-HHHHccCcCcEEEEEecCC----ChhHHHHHHHHHHHhcCceEEEee--c--CCccEEEEEecCCCC-CCCCcHHHH
Q 004354 660 LL-TVKDALSEQGLFIVNLVSR----SQATKDMVISRMKMVFNHLFCLQL--E--EDVNLVLFGLSSESC-IKDNSFPEA 729 (759)
Q Consensus 660 l~-~~~~~L~~~Gilv~N~~~~----~~~~~~~v~~~l~~vF~~v~~~~~--~--~~~N~Vl~a~~~~~~-~~~~~l~~~ 729 (759)
++ .++++|+|||++++|..+. .......++++|+++|++++.+.. + .+.+..++|++.+.. ++...+.++
T Consensus 202 ~~~~~~~~L~p~Gvlv~q~~s~~~~~~~~~~~~i~~tl~~vF~~v~~y~~~vPsf~~~w~f~~aS~~~~~~~~~~~~~~~ 281 (336)
T PLN02823 202 YERIVKPKLNPGGIFVTQAGPAGILTHKEVFSSIYNTLRQVFKYVVPYTAHVPSFADTWGWVMASDHPFADLSAEELDSR 281 (336)
T ss_pred HHHHHHHhcCCCcEEEEeccCcchhccHHHHHHHHHHHHHhCCCEEEEEeecCCCCCceEEEEEeCCccccCChhHHHHh
Confidence 99 9999999999999998653 245677889999999999877653 2 234567888887642 444445554
Q ss_pred H
Q 004354 730 A 730 (759)
Q Consensus 730 a 730 (759)
.
T Consensus 282 ~ 282 (336)
T PLN02823 282 I 282 (336)
T ss_pred h
Confidence 4
No 4
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=99.89 E-value=1e-21 Score=207.68 Aligned_cols=187 Identities=21% Similarity=0.380 Sum_probs=142.1
Q ss_pred hHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCC----CC
Q 004354 504 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ----DK 579 (759)
Q Consensus 504 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~----~~ 579 (759)
+.| +.|++++++.+| +++++|||||+|.|++++.+.++.+..++++|||||.|+++||+||+... |+
T Consensus 60 ~~y-hEml~h~~~~ah--------~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dp 130 (282)
T COG0421 60 FIY-HEMLAHVPLLAH--------PNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDP 130 (282)
T ss_pred HHH-HHHHHhchhhhC--------CCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCC
Confidence 445 457777777776 77789999999999999999999888899999999999999999997665 89
Q ss_pred CeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHH
Q 004354 580 SLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSF 659 (759)
Q Consensus 580 rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~f 659 (759)
|++++++||.+||++.. .+||+||+|.+++. + |.+.|++.+|
T Consensus 131 Rv~i~i~Dg~~~v~~~~--------------------------------~~fDvIi~D~tdp~--g----p~~~Lft~eF 172 (282)
T COG0421 131 RVEIIIDDGVEFLRDCE--------------------------------EKFDVIIVDSTDPV--G----PAEALFTEEF 172 (282)
T ss_pred ceEEEeccHHHHHHhCC--------------------------------CcCCEEEEcCCCCC--C----cccccCCHHH
Confidence 99999999999999875 48999999886652 2 7899999999
Q ss_pred HHHHHHccCcCcEEEEEecC---CChhHHHHHHHHHHHhcCce--EEEeecC--Cc-cEEEEEecCCC-CCC-CCcHHHH
Q 004354 660 LLTVKDALSEQGLFIVNLVS---RSQATKDMVISRMKMVFNHL--FCLQLEE--DV-NLVLFGLSSES-CIK-DNSFPEA 729 (759)
Q Consensus 660 l~~~~~~L~~~Gilv~N~~~---~~~~~~~~v~~~l~~vF~~v--~~~~~~~--~~-N~Vl~a~~~~~-~~~-~~~l~~~ 729 (759)
++.|+++|+++|+++.|.-+ .. .....+...++++|+.+ |...++. .. ..+++++.... ... .+..+.+
T Consensus 173 y~~~~~~L~~~Gi~v~q~~~~~~~~-~~~~~~~~~~~~vf~~~~~~~~~ipt~~~g~~~f~~~s~~~~~~~~~~~~~~~~ 251 (282)
T COG0421 173 YEGCRRALKEDGIFVAQAGSPFLQD-EEIALAYRNVSRVFSIVPPYVAPIPTYPSGFWGFIVASFNKAHPLKSLDALQAR 251 (282)
T ss_pred HHHHHHhcCCCcEEEEecCCcccch-HHHHHHHHHHHhhccccccceeccceecCCceEEEEeecCCCCcccchhHHHHH
Confidence 99999999999999999322 22 23345678889999853 3333332 22 34666763332 222 2335555
Q ss_pred HHHHhhhcCC
Q 004354 730 AVQLGKLVKF 739 (759)
Q Consensus 730 a~~l~~~~~~ 739 (759)
+..+ ..+++
T Consensus 252 ~~~~-~~~~y 260 (282)
T COG0421 252 ALAL-LTLKY 260 (282)
T ss_pred Hhhh-hhhcc
Confidence 5555 44454
No 5
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=99.89 E-value=2.2e-22 Score=210.41 Aligned_cols=168 Identities=24% Similarity=0.387 Sum_probs=131.1
Q ss_pred hHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC----CCCC
Q 004354 504 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF----TQDK 579 (759)
Q Consensus 504 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl----~~~~ 579 (759)
..||++|+ +++++.+ +++++||+||+|+|++++.+.++.+..+|++|||||.|+++|++||+. ..|+
T Consensus 60 ~~y~e~l~-h~~~~~~--------~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~ 130 (246)
T PF01564_consen 60 FIYHEMLV-HPPLLLH--------PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDP 130 (246)
T ss_dssp HHHHHHHH-HHHHHHS--------SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGST
T ss_pred HHHHHHHh-hhHhhcC--------CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCC
Confidence 56888665 4455544 688999999999999999999887677999999999999999999954 2589
Q ss_pred CeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHH
Q 004354 580 SLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSF 659 (759)
Q Consensus 580 rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~f 659 (759)
|++++++||+.||++.. ..+||+||+|+++++. |+..+++.+|
T Consensus 131 r~~i~~~Dg~~~l~~~~-------------------------------~~~yDvIi~D~~dp~~------~~~~l~t~ef 173 (246)
T PF01564_consen 131 RVRIIIGDGRKFLKETQ-------------------------------EEKYDVIIVDLTDPDG------PAPNLFTREF 173 (246)
T ss_dssp TEEEEESTHHHHHHTSS-------------------------------ST-EEEEEEESSSTTS------CGGGGSSHHH
T ss_pred ceEEEEhhhHHHHHhcc-------------------------------CCcccEEEEeCCCCCC------CcccccCHHH
Confidence 99999999999999865 1289999999987532 4555999999
Q ss_pred HHHHHHccCcCcEEEEEecCC--ChhHHHHHHHHHHHhcCceEEEe--ecCC-ccEEEEEecC
Q 004354 660 LLTVKDALSEQGLFIVNLVSR--SQATKDMVISRMKMVFNHLFCLQ--LEED-VNLVLFGLSS 717 (759)
Q Consensus 660 l~~~~~~L~~~Gilv~N~~~~--~~~~~~~v~~~l~~vF~~v~~~~--~~~~-~N~Vl~a~~~ 717 (759)
++.++++|+|+|++++|..+. .......+.++++++|+++..+. ++.. .+...|+..+
T Consensus 174 ~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~~v~~~~~~vP~~~~~~~~~~~~s 236 (246)
T PF01564_consen 174 YQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSVFPQVKPYTAYVPSYGSGWWSFASAS 236 (246)
T ss_dssp HHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTTSSEEEEEEEECTTSCSSEEEEEEEE
T ss_pred HHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHhCCceEEEEEEcCeecccceeEEEEe
Confidence 999999999999999998443 45667788899999999865544 4443 3334444433
No 6
>PRK00811 spermidine synthase; Provisional
Probab=99.88 E-value=6.5e-21 Score=203.64 Aligned_cols=167 Identities=24% Similarity=0.339 Sum_probs=134.4
Q ss_pred hHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcC-----CCCC
Q 004354 504 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG-----FTQD 578 (759)
Q Consensus 504 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg-----l~~~ 578 (759)
+.||+ |+++++++.+ +++.+||+||+|+|.+++.+.++.+..+|++|||||.|+++|++||. +.++
T Consensus 60 ~~Y~e-~l~h~~~~~~--------~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d 130 (283)
T PRK00811 60 FIYHE-MMTHVPLFAH--------PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDD 130 (283)
T ss_pred hhHHH-HhhhHHHhhC--------CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccC
Confidence 57887 5556666655 67889999999999999988877556699999999999999999983 3368
Q ss_pred CCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHH
Q 004354 579 KSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGS 658 (759)
Q Consensus 579 ~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~ 658 (759)
+|++++++||++|++.. ..+||+||+|+..+. +|+..+++.+
T Consensus 131 ~rv~v~~~Da~~~l~~~--------------------------------~~~yDvIi~D~~dp~------~~~~~l~t~e 172 (283)
T PRK00811 131 PRVELVIGDGIKFVAET--------------------------------ENSFDVIIVDSTDPV------GPAEGLFTKE 172 (283)
T ss_pred CceEEEECchHHHHhhC--------------------------------CCcccEEEECCCCCC------CchhhhhHHH
Confidence 99999999999999763 268999999885442 3677899999
Q ss_pred HHHHHHHccCcCcEEEEEecCC--ChhHHHHHHHHHHHhcCceEEEee--cC---CccEEEEEecC
Q 004354 659 FLLTVKDALSEQGLFIVNLVSR--SQATKDMVISRMKMVFNHLFCLQL--EE---DVNLVLFGLSS 717 (759)
Q Consensus 659 fl~~~~~~L~~~Gilv~N~~~~--~~~~~~~v~~~l~~vF~~v~~~~~--~~---~~N~Vl~a~~~ 717 (759)
|++.++++|+|||++++|..+. +......++++|+++|+++..+.. +. +....++|++.
T Consensus 173 f~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~~tl~~~F~~v~~~~~~vp~~~~~~w~f~~as~~ 238 (283)
T PRK00811 173 FYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKLKEVFPIVRPYQAAIPTYPSGLWSFTFASKN 238 (283)
T ss_pred HHHHHHHhcCCCcEEEEeCCCcccCHHHHHHHHHHHHHHCCCEEEEEeECCcccCchheeEEeecC
Confidence 9999999999999999997543 345667789999999999866653 22 23345778774
No 7
>PLN02366 spermidine synthase
Probab=99.87 E-value=1.7e-20 Score=201.72 Aligned_cols=168 Identities=21% Similarity=0.331 Sum_probs=133.2
Q ss_pred hHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC----CCCC
Q 004354 504 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF----TQDK 579 (759)
Q Consensus 504 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl----~~~~ 579 (759)
..||. |++++++..+ +++++||+||+|+|++++.+.++.+..+|++||||+.|+++|++||.. ..++
T Consensus 75 ~~Y~e-~l~h~~l~~~--------~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dp 145 (308)
T PLN02366 75 CAYQE-MITHLPLCSI--------PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDP 145 (308)
T ss_pred HHHHH-HHHHHHHhhC--------CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCC
Confidence 56766 6667777654 678999999999999999998884456999999999999999999942 2588
Q ss_pred CeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHH
Q 004354 580 SLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSF 659 (759)
Q Consensus 580 rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~f 659 (759)
|++++++||++|+++.. +.+||+||+|++.+. .|+..+++.+|
T Consensus 146 Rv~vi~~Da~~~l~~~~-------------------------------~~~yDvIi~D~~dp~------~~~~~L~t~ef 188 (308)
T PLN02366 146 RVNLHIGDGVEFLKNAP-------------------------------EGTYDAIIVDSSDPV------GPAQELFEKPF 188 (308)
T ss_pred ceEEEEChHHHHHhhcc-------------------------------CCCCCEEEEcCCCCC------CchhhhhHHHH
Confidence 99999999999998653 257999999886553 26788999999
Q ss_pred HHHHHHccCcCcEEEEEecCC--ChhHHHHHHHHHHHhcC-ceEE--EeecC---CccEEEEEecC
Q 004354 660 LLTVKDALSEQGLFIVNLVSR--SQATKDMVISRMKMVFN-HLFC--LQLEE---DVNLVLFGLSS 717 (759)
Q Consensus 660 l~~~~~~L~~~Gilv~N~~~~--~~~~~~~v~~~l~~vF~-~v~~--~~~~~---~~N~Vl~a~~~ 717 (759)
++.++++|+|||+++.|..+. .......++++|+++|+ .+.. ..++. +....++|++.
T Consensus 189 ~~~~~~~L~pgGvlv~q~~s~~~~~~~~~~i~~tl~~~F~~~v~~~~~~vPsy~~g~w~f~~as~~ 254 (308)
T PLN02366 189 FESVARALRPGGVVCTQAESMWLHMDLIEDLIAICRETFKGSVNYAWTTVPTYPSGVIGFVLCSKE 254 (308)
T ss_pred HHHHHHhcCCCcEEEECcCCcccchHHHHHHHHHHHHHCCCceeEEEecCCCcCCCceEEEEEECC
Confidence 999999999999999876432 34556778999999994 5433 23332 33557778776
No 8
>PRK01581 speE spermidine synthase; Validated
Probab=99.82 E-value=3.5e-19 Score=192.26 Aligned_cols=170 Identities=16% Similarity=0.214 Sum_probs=131.8
Q ss_pred hHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC-------
Q 004354 504 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT------- 576 (759)
Q Consensus 504 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~------- 576 (759)
+.||.+|+. .++..+ +++++||+||+|+|.+++.+.++.+..+|++|||||+|+++|+++|.++
T Consensus 134 ~iYHE~Lvh-p~m~~h--------~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~ 204 (374)
T PRK01581 134 QIYHEALVH-PIMSKV--------IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAF 204 (374)
T ss_pred HHHHHHHHH-HHHHhC--------CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccC
Confidence 458887664 444444 6789999999999998888888766679999999999999999976543
Q ss_pred CCCCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCCh
Q 004354 577 QDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE 656 (759)
Q Consensus 577 ~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~ 656 (759)
.++|++++++||++|++... .+||+||+|+..+. . .++..+++
T Consensus 205 ~DpRV~vvi~Da~~fL~~~~--------------------------------~~YDVIIvDl~DP~--~---~~~~~LyT 247 (374)
T PRK01581 205 FDNRVNVHVCDAKEFLSSPS--------------------------------SLYDVIIIDFPDPA--T---ELLSTLYT 247 (374)
T ss_pred CCCceEEEECcHHHHHHhcC--------------------------------CCccEEEEcCCCcc--c---cchhhhhH
Confidence 58999999999999997643 57999999985432 1 24678999
Q ss_pred HHHHHHHHHccCcCcEEEEEecCCC--hhHHHHHHHHHHHhcCceEEEee--c--CCccEEEEEecCCC
Q 004354 657 GSFLLTVKDALSEQGLFIVNLVSRS--QATKDMVISRMKMVFNHLFCLQL--E--EDVNLVLFGLSSES 719 (759)
Q Consensus 657 ~~fl~~~~~~L~~~Gilv~N~~~~~--~~~~~~v~~~l~~vF~~v~~~~~--~--~~~N~Vl~a~~~~~ 719 (759)
.+|++.|+++|+|||+|+++..+.. ......+.++|+++|..+..+.. + .+....++|++.+.
T Consensus 248 ~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~~y~t~vPsyg~~WgF~~as~~~~ 316 (374)
T PRK01581 248 SELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVKSYHTIVPSFGTDWGFHIAANSAY 316 (374)
T ss_pred HHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCceEEEEEecCCCCCceEEEEEeCCcc
Confidence 9999999999999999999864432 22334567899999998665542 2 23466788877664
No 9
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.79 E-value=7.8e-18 Score=178.99 Aligned_cols=167 Identities=21% Similarity=0.304 Sum_probs=131.6
Q ss_pred hHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC----CCCC
Q 004354 504 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF----TQDK 579 (759)
Q Consensus 504 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl----~~~~ 579 (759)
..||.. +++++++.+ +++.+||+||+|+|.++..+..+.+..++++||+|+.|++.|+++|.. ..++
T Consensus 56 ~~y~e~-l~~~~l~~~--------~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~ 126 (270)
T TIGR00417 56 FIYHEM-IAHVPLFTH--------PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDP 126 (270)
T ss_pred HHHHHH-hhhhHhhcC--------CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCC
Confidence 568764 455555544 567799999999999998888776667999999999999999999832 3578
Q ss_pred CeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHH
Q 004354 580 SLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSF 659 (759)
Q Consensus 580 rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~f 659 (759)
+++++++||++|+++.. .+||+||+|...+. .|+..+++.+|
T Consensus 127 ~v~i~~~D~~~~l~~~~--------------------------------~~yDvIi~D~~~~~------~~~~~l~~~ef 168 (270)
T TIGR00417 127 RVDLQIDDGFKFLADTE--------------------------------NTFDVIIVDSTDPV------GPAETLFTKEF 168 (270)
T ss_pred ceEEEECchHHHHHhCC--------------------------------CCccEEEEeCCCCC------CcccchhHHHH
Confidence 99999999999998643 67999999876442 24677889999
Q ss_pred HHHHHHccCcCcEEEEEecCC--ChhHHHHHHHHHHHhcCceEEEee--c---CCccEEEEEecC
Q 004354 660 LLTVKDALSEQGLFIVNLVSR--SQATKDMVISRMKMVFNHLFCLQL--E---EDVNLVLFGLSS 717 (759)
Q Consensus 660 l~~~~~~L~~~Gilv~N~~~~--~~~~~~~v~~~l~~vF~~v~~~~~--~---~~~N~Vl~a~~~ 717 (759)
++.++++|+|||++++|..+. .......+.++++++|+++..+.. + .+....++|++.
T Consensus 169 ~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~tl~~~F~~v~~~~~~vp~~~~g~~~~~~as~~ 233 (270)
T TIGR00417 169 YELLKKALNEDGIFVAQSESPWIQLELITDLKRDVKEAFPITEYYTANIPTYPSGLWTFTIGSKN 233 (270)
T ss_pred HHHHHHHhCCCcEEEEcCCCcccCHHHHHHHHHHHHHHCCCeEEEEEEcCccccchhEEEEEECC
Confidence 999999999999999996443 245566778999999999765543 2 334667888873
No 10
>PRK00536 speE spermidine synthase; Provisional
Probab=99.73 E-value=5.7e-17 Score=169.77 Aligned_cols=161 Identities=12% Similarity=0.058 Sum_probs=123.2
Q ss_pred ceeecCCcc-----chHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHH
Q 004354 494 QLKVYHGYL-----ASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNL 568 (759)
Q Consensus 494 ~~~~d~~~L-----~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~v 568 (759)
.+.+| ... .+-||. |+++.+|+.| ++|++|||||+|.|+..+-+.++ |. +|+.||||++|+++
T Consensus 42 ~LvLD-~~~~te~dEfiYHE-mLvHppl~~h--------~~pk~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~Vv~~ 109 (262)
T PRK00536 42 IAMLN-KQLLFKNFLHIESE-LLAHMGGCTK--------KELKEVLIVDGFDLELAHQLFKY-DT-HVDFVQADEKILDS 109 (262)
T ss_pred EEEEe-eeeeecchhhhHHH-HHHHHHHhhC--------CCCCeEEEEcCCchHHHHHHHCc-CC-eeEEEECCHHHHHH
Confidence 45666 433 355765 6667888877 89999999999999998888877 44 99999999999999
Q ss_pred HHhhc-----CCCCCCCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCC
Q 004354 569 AEDYF-----GFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDS 643 (759)
Q Consensus 569 A~~~F-----gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~ 643 (759)
|++|| ++ +|||+++++ ++.+.. .++||+||+|. .
T Consensus 110 ~k~~lP~~~~~~-~DpRv~l~~-----~~~~~~-------------------------------~~~fDVIIvDs--~-- 148 (262)
T PRK00536 110 FISFFPHFHEVK-NNKNFTHAK-----QLLDLD-------------------------------IKKYDLIICLQ--E-- 148 (262)
T ss_pred HHHHCHHHHHhh-cCCCEEEee-----hhhhcc-------------------------------CCcCCEEEEcC--C--
Confidence 99998 33 699999997 333321 25799999984 1
Q ss_pred CCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCC--ChhHHHHHHHHHHHhcCceEEEe--ecCC-ccEEEEEecCC
Q 004354 644 SSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR--SQATKDMVISRMKMVFNHLFCLQ--LEED-VNLVLFGLSSE 718 (759)
Q Consensus 644 ~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~--~~~~~~~v~~~l~~vF~~v~~~~--~~~~-~N~Vl~a~~~~ 718 (759)
.+++|++.|+++|+|||+++...-+. .......+.++++++|+.+..+. ++.. ....++|++..
T Consensus 149 -----------~~~~fy~~~~~~L~~~Gi~v~Qs~sp~~~~~~~~~i~~~l~~~F~~v~~y~~~vp~~g~wgf~~aS~~~ 217 (262)
T PRK00536 149 -----------PDIHKIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGDFFSIAMPFVAPLRILSNKGYIYASFKT 217 (262)
T ss_pred -----------CChHHHHHHHHhcCCCcEEEECCCCcccCHHHHHHHHHHHHhhCCceEEEEecCCCcchhhhheecCCC
Confidence 23789999999999999999886544 35666788999999999765443 3332 45577787653
No 11
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.67 E-value=5.6e-16 Score=149.32 Aligned_cols=147 Identities=29% Similarity=0.462 Sum_probs=109.3
Q ss_pred ccccccCCCCHHHHHHHHhhcC-----CCCccc-cccchhhhHHHHHHhhcCC----CC-CCCCeEEEECCCcchhHHHH
Q 004354 18 LLQTLGDFTSKENWDKFFTIRG-----IGDSFE-WYAEWPQLRDPLISLIGAP----TS-SPPPQILVPGCGNSRLSEHL 86 (759)
Q Consensus 18 lP~~~~~f~~~~yWd~~y~~~~-----~~~~~e-W~~~~~~l~~~l~~~l~~~----~~-~~~~~ILDlGCG~G~ls~~L 86 (759)
|+.+ ..+.++||++.|..+. +++.-| |+++ +....+..|+... .. ....+|||+|||||.+...|
T Consensus 10 l~~S--~LGtK~yWD~~Y~~El~Nfr~hgd~GEvWFg~--~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L 85 (227)
T KOG1271|consen 10 LGQS--KLGTKSYWDAAYELELTNFREHGDEGEVWFGE--DAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQL 85 (227)
T ss_pred cccc--ccchHHHHHHHHHHHHhhcccCCCccceecCC--cHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHH
Confidence 5444 4688999999998653 233333 9996 4444455555331 11 23349999999999999999
Q ss_pred HHhCCCe-EEEEeCCHHHHHHHHHHhccCC-CC-cEEEEeecccCC------------CcccEEEeCCCCh-hHHHHHHH
Q 004354 87 YDAGFHG-ITNVDFSKVVISDMLRRNVRDR-SD-MRWRVMDMTSMQ------------GGLDALMEPELGH-KLGNQYLS 150 (759)
Q Consensus 87 ~~~G~~~-VtgIDiS~~~I~~a~~r~~~~~-~~-i~f~~~D~~~~~------------gtfD~Ii~~~~~~-~~~~~~l~ 150 (759)
++.||.. ++|+|+|+.+++.|+..++... ++ ++|.+.|+++.. |++|+|-.+.... ..+..++.
T Consensus 86 ~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d 165 (227)
T KOG1271|consen 86 AKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLD 165 (227)
T ss_pred HHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceeeeecCCCCcccceeeehh
Confidence 9999975 9999999999999887765443 33 999999999854 6777776554322 22578999
Q ss_pred HHHHhcccCcEEEEEEcC
Q 004354 151 EVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 151 ei~rvLkpGG~liiit~~ 168 (759)
.+.++|+|||+|++.+..
T Consensus 166 ~v~~ll~~~gifvItSCN 183 (227)
T KOG1271|consen 166 SVEKLLSPGGIFVITSCN 183 (227)
T ss_pred hHhhccCCCcEEEEEecC
Confidence 999999999999999864
No 12
>PRK03612 spermidine synthase; Provisional
Probab=99.66 E-value=1.8e-15 Score=174.65 Aligned_cols=168 Identities=17% Similarity=0.250 Sum_probs=124.6
Q ss_pred hHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC-------
Q 004354 504 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT------- 576 (759)
Q Consensus 504 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~------- 576 (759)
..||..+. +.++..+ +++++||+||+|+|.++..+.++.+..+|++||+||+|+++|+++|.++
T Consensus 281 ~~y~e~l~-~~~l~~~--------~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~ 351 (521)
T PRK03612 281 YRYHEALV-HPAMAAS--------ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGAL 351 (521)
T ss_pred HHHHHHHH-HHHHhhC--------CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhcccc
Confidence 44777644 4444443 5778999999999999988887633369999999999999999965332
Q ss_pred CCCCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCCh
Q 004354 577 QDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE 656 (759)
Q Consensus 577 ~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~ 656 (759)
+++|++++++||++|+++.. ++||+||+|...+.. ..+..+++
T Consensus 352 ~dprv~vi~~Da~~~l~~~~--------------------------------~~fDvIi~D~~~~~~-----~~~~~L~t 394 (521)
T PRK03612 352 DDPRVTVVNDDAFNWLRKLA--------------------------------EKFDVIIVDLPDPSN-----PALGKLYS 394 (521)
T ss_pred CCCceEEEEChHHHHHHhCC--------------------------------CCCCEEEEeCCCCCC-----cchhccch
Confidence 46899999999999997643 579999999754321 11467899
Q ss_pred HHHHHHHHHccCcCcEEEEEecCC--ChhHHHHHHHHHHHh-cCceEEEe--ecCC-ccEEEEEecCC
Q 004354 657 GSFLLTVKDALSEQGLFIVNLVSR--SQATKDMVISRMKMV-FNHLFCLQ--LEED-VNLVLFGLSSE 718 (759)
Q Consensus 657 ~~fl~~~~~~L~~~Gilv~N~~~~--~~~~~~~v~~~l~~v-F~~v~~~~--~~~~-~N~Vl~a~~~~ 718 (759)
.+|++.++++|+|||++++|..+. .......+.++++++ | .+..+. ++.. .....+|++.+
T Consensus 395 ~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf-~v~~~~~~vps~g~w~f~~as~~~ 461 (521)
T PRK03612 395 VEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGL-ATTPYHVNVPSFGEWGFVLAGAGA 461 (521)
T ss_pred HHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCC-EEEEEEeCCCCcchhHHHeeeCCC
Confidence 999999999999999999997543 344456788999999 8 543332 3332 22356676653
No 13
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.61 E-value=6.6e-15 Score=151.89 Aligned_cols=116 Identities=22% Similarity=0.376 Sum_probs=97.5
Q ss_pred hhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeecccCC
Q 004354 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ 129 (759)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~~~-~~i~f~~~D~~~~~ 129 (759)
..++.+...+.. .++.+|||||||||.++..+++. |..+|+++|+|+.|++.++++..... .+++|+++|++++|
T Consensus 38 ~Wr~~~i~~~~~---~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LP 114 (238)
T COG2226 38 LWRRALISLLGI---KPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLP 114 (238)
T ss_pred HHHHHHHHhhCC---CCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCC
Confidence 334445555443 47899999999999999999987 44579999999999999999986533 34999999999999
Q ss_pred ---CcccEEEeCCCChhH--HHHHHHHHHHhcccCcEEEEEEcCch
Q 004354 130 ---GGLDALMEPELGHKL--GNQYLSEVKRLLKSGGKFVCLTLAES 170 (759)
Q Consensus 130 ---gtfD~Ii~~~~~~~~--~~~~l~ei~rvLkpGG~liiit~~~~ 170 (759)
++||+|.+....+.. .+++|+|++|+|||||+++++.+.++
T Consensus 115 f~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p 160 (238)
T COG2226 115 FPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKP 160 (238)
T ss_pred CCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCC
Confidence 899999998765544 89999999999999999999999876
No 14
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.57 E-value=1e-12 Score=150.94 Aligned_cols=106 Identities=22% Similarity=0.302 Sum_probs=83.7
Q ss_pred HHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccc--CC---C
Q 004354 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTS--MQ---G 130 (759)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~--~~---g 130 (759)
.+...+.. .++.+|||+|||+|.++..|++.+ .+|+|+|+|+.+++.+++.. ...++++++++|+.+ ++ +
T Consensus 28 ~il~~l~~---~~~~~vLDlGcG~G~~~~~la~~~-~~v~giD~s~~~l~~a~~~~-~~~~~i~~~~~d~~~~~~~~~~~ 102 (475)
T PLN02336 28 EILSLLPP---YEGKSVLELGAGIGRFTGELAKKA-GQVIALDFIESVIKKNESIN-GHYKNVKFMCADVTSPDLNISDG 102 (475)
T ss_pred HHHhhcCc---cCCCEEEEeCCCcCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHh-ccCCceEEEEecccccccCCCCC
Confidence 34455543 356799999999999999999874 46999999999998876543 334679999999863 22 7
Q ss_pred cccEEEeCCCChhH----HHHHHHHHHHhcccCcEEEEEE
Q 004354 131 GLDALMEPELGHKL----GNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 131 tfD~Ii~~~~~~~~----~~~~l~ei~rvLkpGG~liiit 166 (759)
+||+|++....++. ...+++++.++|+|||++++..
T Consensus 103 ~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d 142 (475)
T PLN02336 103 SVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRE 142 (475)
T ss_pred CEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 89999997654432 6789999999999999998765
No 15
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.56 E-value=2.5e-14 Score=146.67 Aligned_cols=133 Identities=19% Similarity=0.335 Sum_probs=97.6
Q ss_pred HHHHHHHhhcCCCCccccccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHH
Q 004354 29 ENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDML 108 (759)
Q Consensus 29 ~yWd~~y~~~~~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~ 108 (759)
+||+++|+... .-|... .....+..++......++.+|||+|||.|+.+..|+++|+. |+|+|+|+.+++.+.
T Consensus 1 ~~Wd~ry~~~~----~~w~~~--~p~~~l~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~G~~-V~gvD~S~~Ai~~~~ 73 (213)
T TIGR03840 1 EFWHERWQEGQ----IGFHQS--EVNPLLVKHWPALGLPAGARVFVPLCGKSLDLAWLAEQGHR-VLGVELSEIAVEQFF 73 (213)
T ss_pred ChHHHHHhcCC----CCCccC--CCCHHHHHHHHhhCCCCCCeEEEeCCCchhHHHHHHhCCCe-EEEEeCCHHHHHHHH
Confidence 48999997652 345432 22223333333211135679999999999999999999996 999999999999864
Q ss_pred HHhcc-------------CCCCcEEEEeecccCC----CcccEEEeCC----CChhHHHHHHHHHHHhcccCcEEEEEEc
Q 004354 109 RRNVR-------------DRSDMRWRVMDMTSMQ----GGLDALMEPE----LGHKLGNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 109 ~r~~~-------------~~~~i~f~~~D~~~~~----gtfD~Ii~~~----~~~~~~~~~l~ei~rvLkpGG~liiit~ 167 (759)
+.... ...++++.++|+.++. ++||.|+... .....+..+++.+.++|+|||+++++++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~ 153 (213)
T TIGR03840 74 AENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITL 153 (213)
T ss_pred HHcCCCcceeccccceeeecCceEEEEccCCCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEE
Confidence 43211 2346899999998876 6799988643 3334488899999999999999888876
Q ss_pred C
Q 004354 168 A 168 (759)
Q Consensus 168 ~ 168 (759)
.
T Consensus 154 ~ 154 (213)
T TIGR03840 154 D 154 (213)
T ss_pred E
Confidence 4
No 16
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.55 E-value=9.3e-14 Score=142.97 Aligned_cols=134 Identities=19% Similarity=0.331 Sum_probs=99.2
Q ss_pred CHHHHHHHHhhcCCCCccccccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHH
Q 004354 27 SKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISD 106 (759)
Q Consensus 27 ~~~yWd~~y~~~~~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~ 106 (759)
+++||+++|+... .-|... ...+.+.+++......++.+|||+|||.|..+..|++.|+. |+|+|+|+.+++.
T Consensus 2 ~~~~Wd~rw~~~~----~~~~~~--~p~~~L~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~G~~-V~avD~s~~Ai~~ 74 (218)
T PRK13255 2 DPDFWHEKWAENQ----IGFHQE--EVNPLLQKYWPALALPAGSRVLVPLCGKSLDMLWLAEQGHE-VLGVELSELAVEQ 74 (218)
T ss_pred CHhHHHHHHcCCC----CCCCCC--CCCHHHHHHHHhhCCCCCCeEEEeCCCChHhHHHHHhCCCe-EEEEccCHHHHHH
Confidence 4679999997652 224322 23344555553222245679999999999999999999996 9999999999998
Q ss_pred HHHHhcc-------------CCCCcEEEEeecccCC----CcccEEEeCC----CChhHHHHHHHHHHHhcccCcEEEEE
Q 004354 107 MLRRNVR-------------DRSDMRWRVMDMTSMQ----GGLDALMEPE----LGHKLGNQYLSEVKRLLKSGGKFVCL 165 (759)
Q Consensus 107 a~~r~~~-------------~~~~i~f~~~D~~~~~----gtfD~Ii~~~----~~~~~~~~~l~ei~rvLkpGG~liii 165 (759)
+.+.... ...++++.++|+.++. +.||+|+... .....+.++++.+.++|+|||+++++
T Consensus 75 ~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~ 154 (218)
T PRK13255 75 FFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLV 154 (218)
T ss_pred HHHHcCCCccccccccccccccCceEEEECcccCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 7543211 1356899999999885 6899999533 34445899999999999999986665
Q ss_pred Ec
Q 004354 166 TL 167 (759)
Q Consensus 166 t~ 167 (759)
++
T Consensus 155 ~~ 156 (218)
T PRK13255 155 TL 156 (218)
T ss_pred EE
Confidence 54
No 17
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.53 E-value=3e-14 Score=147.98 Aligned_cols=112 Identities=23% Similarity=0.376 Sum_probs=82.8
Q ss_pred HHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh-CC-CeEEEEeCCHHHHHHHHHHhccC-CCCcEEEEeecccCC---
Q 004354 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GF-HGITNVDFSKVVISDMLRRNVRD-RSDMRWRVMDMTSMQ--- 129 (759)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~-G~-~~VtgIDiS~~~I~~a~~r~~~~-~~~i~f~~~D~~~~~--- 129 (759)
.+.+.+.. .++.+|||+|||||.++..+++. +. ..|+|+|+|+.|++.++++.... ..+++|+++|+++++
T Consensus 38 ~~~~~~~~---~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d 114 (233)
T PF01209_consen 38 KLIKLLGL---RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPD 114 (233)
T ss_dssp HHHHHHT-----S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-T
T ss_pred HHHhccCC---CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCC
Confidence 34444433 56789999999999999999876 32 36999999999999999987543 358999999999998
Q ss_pred CcccEEEeCCCChhH--HHHHHHHHHHhcccCcEEEEEEcCch
Q 004354 130 GGLDALMEPELGHKL--GNQYLSEVKRLLKSGGKFVCLTLAES 170 (759)
Q Consensus 130 gtfD~Ii~~~~~~~~--~~~~l~ei~rvLkpGG~liiit~~~~ 170 (759)
++||+|++....+.. ..+.++|++|+|||||+++++.++.|
T Consensus 115 ~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p 157 (233)
T PF01209_consen 115 NSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSKP 157 (233)
T ss_dssp T-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-
T ss_pred CceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCC
Confidence 899999997755543 78899999999999999999999876
No 18
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.51 E-value=1.3e-13 Score=125.94 Aligned_cols=98 Identities=26% Similarity=0.324 Sum_probs=82.6
Q ss_pred CCCeEEEECCCcchhHHHHHH--hCCCeEEEEeCCHHHHHHHHHHh--ccCCCCcEEEEeec-ccCC--CcccEEEeCC-
Q 004354 68 PPPQILVPGCGNSRLSEHLYD--AGFHGITNVDFSKVVISDMLRRN--VRDRSDMRWRVMDM-TSMQ--GGLDALMEPE- 139 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~--~G~~~VtgIDiS~~~I~~a~~r~--~~~~~~i~f~~~D~-~~~~--gtfD~Ii~~~- 139 (759)
|+.+|||+|||+|.++..+++ .+. +|+|+|+|+.+++.|+++. ....++++|++.|+ .... +.||+|++..
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~ 79 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGA-RVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGF 79 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTS-EEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSG
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCC
Confidence 467999999999999999999 444 5999999999999999998 33457899999999 3333 7899999987
Q ss_pred CC----h-hHHHHHHHHHHHhcccCcEEEEEE
Q 004354 140 LG----H-KLGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 140 ~~----~-~~~~~~l~ei~rvLkpGG~liiit 166 (759)
.. + ....++++.+.+.|+|||++++.+
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 80 TLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 22 2 237889999999999999999876
No 19
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.49 E-value=3.2e-13 Score=138.81 Aligned_cols=136 Identities=14% Similarity=0.255 Sum_probs=106.0
Q ss_pred CCHHHHHHHHhhcCCCCccccccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHH
Q 004354 26 TSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVIS 105 (759)
Q Consensus 26 ~~~~yWd~~y~~~~~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~ 105 (759)
.+.+||+++|++.. .-|... .....+.+++......++.+||++|||.|..+.+|++.|+. |+|+|+|+.+|+
T Consensus 7 ~~~~fW~~rw~~~~----~~f~~~--~pnp~L~~~~~~l~~~~~~rvLvPgCGkg~D~~~LA~~G~~-V~GvDlS~~Ai~ 79 (226)
T PRK13256 7 NNNQYWLDRWQNDD----VGFCQE--SPNEFLVKHFSKLNINDSSVCLIPMCGCSIDMLFFLSKGVK-VIGIELSEKAVL 79 (226)
T ss_pred CCHHHHHHHHhcCC----CCCccC--CCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHhCCCc-EEEEecCHHHHH
Confidence 46789999999763 225444 23445555554433345689999999999999999999997 999999999999
Q ss_pred HHHHHhc-------------cCCCCcEEEEeecccCC------CcccEEEeCC----CChhHHHHHHHHHHHhcccCcEE
Q 004354 106 DMLRRNV-------------RDRSDMRWRVMDMTSMQ------GGLDALMEPE----LGHKLGNQYLSEVKRLLKSGGKF 162 (759)
Q Consensus 106 ~a~~r~~-------------~~~~~i~f~~~D~~~~~------gtfD~Ii~~~----~~~~~~~~~l~ei~rvLkpGG~l 162 (759)
.+.+.+. ....++++.++|+.+++ +.||+|+-.. .....+.++.+.+.++|+|||.+
T Consensus 80 ~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~l 159 (226)
T PRK13256 80 SFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQI 159 (226)
T ss_pred HHHHHcCCCcceecccccceeccCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEE
Confidence 8866421 12357899999999985 5899988643 44556999999999999999999
Q ss_pred EEEEcC
Q 004354 163 VCLTLA 168 (759)
Q Consensus 163 iiit~~ 168 (759)
+++++.
T Consensus 160 lll~~~ 165 (226)
T PRK13256 160 LLLVME 165 (226)
T ss_pred EEEEEe
Confidence 999873
No 20
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.48 E-value=4.5e-13 Score=141.83 Aligned_cols=114 Identities=22% Similarity=0.267 Sum_probs=91.8
Q ss_pred HHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh-CC-CeEEEEeCCHHHHHHHHHHhc----cCCCCcEEEEeeccc
Q 004354 54 RDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GF-HGITNVDFSKVVISDMLRRNV----RDRSDMRWRVMDMTS 127 (759)
Q Consensus 54 ~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~-G~-~~VtgIDiS~~~I~~a~~r~~----~~~~~i~f~~~D~~~ 127 (759)
+..+.+++.. .++.+|||+|||+|.++..+++. +. .+|+|+|+|+.|++.|+++.. ....+++++++|+.+
T Consensus 62 r~~~~~~~~~---~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~ 138 (261)
T PLN02233 62 KRMAVSWSGA---KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATD 138 (261)
T ss_pred HHHHHHHhCC---CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEccccc
Confidence 3344444443 56789999999999999988875 43 379999999999999987642 123579999999998
Q ss_pred CC---CcccEEEeCCCChhH--HHHHHHHHHHhcccCcEEEEEEcCch
Q 004354 128 MQ---GGLDALMEPELGHKL--GNQYLSEVKRLLKSGGKFVCLTLAES 170 (759)
Q Consensus 128 ~~---gtfD~Ii~~~~~~~~--~~~~l~ei~rvLkpGG~liiit~~~~ 170 (759)
++ ++||+|++....++. ...+++++.|+|||||+++++++..+
T Consensus 139 lp~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~ 186 (261)
T PLN02233 139 LPFDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKS 186 (261)
T ss_pred CCCCCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCCC
Confidence 87 789999997655543 78999999999999999999998754
No 21
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.47 E-value=4.6e-13 Score=135.86 Aligned_cols=108 Identities=21% Similarity=0.338 Sum_probs=87.2
Q ss_pred HHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeecccCC--Ccc
Q 004354 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ--GGL 132 (759)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~-~~i~f~~~D~~~~~--gtf 132 (759)
.+.+.+.. .++.+|||+|||+|.++..|++.|+ +|+|+|+|+.+++.++++..... .++++.++|+.+++ +.|
T Consensus 21 ~l~~~l~~---~~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~f 96 (197)
T PRK11207 21 EVLEAVKV---VKPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGEY 96 (197)
T ss_pred HHHHhccc---CCCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCCc
Confidence 34445443 4568999999999999999999987 59999999999999988764433 45899999998765 789
Q ss_pred cEEEeCCCChh----HHHHHHHHHHHhcccCcEEEEEEc
Q 004354 133 DALMEPELGHK----LGNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 133 D~Ii~~~~~~~----~~~~~l~ei~rvLkpGG~liiit~ 167 (759)
|+|++....++ ....+++++.++|+|||+++++++
T Consensus 97 D~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~ 135 (197)
T PRK11207 97 DFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAA 135 (197)
T ss_pred CEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence 99999765432 378999999999999999776543
No 22
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.47 E-value=1.8e-13 Score=120.30 Aligned_cols=90 Identities=26% Similarity=0.437 Sum_probs=76.5
Q ss_pred EEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC---CcccEEEeCCCChh--HHHH
Q 004354 73 LVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ---GGLDALMEPELGHK--LGNQ 147 (759)
Q Consensus 73 LDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~---gtfD~Ii~~~~~~~--~~~~ 147 (759)
||+|||+|..+..|++.+..+|+++|+|+.+++.++++... ..+.+.++|+++++ ++||+|++....++ ...+
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~--~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~~~~ 78 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKN--EGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLEDPEA 78 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTT--STEEEEESBTTSSSS-TT-EEEEEEESHGGGSSHHHH
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccc--cCchheeehHHhCccccccccccccccceeeccCHHH
Confidence 89999999999999999556799999999999999888643 34669999999998 89999999875554 4999
Q ss_pred HHHHHHHhcccCcEEEE
Q 004354 148 YLSEVKRLLKSGGKFVC 164 (759)
Q Consensus 148 ~l~ei~rvLkpGG~lii 164 (759)
+++++.|+|||||++++
T Consensus 79 ~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 79 ALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHcCcCeEEeC
Confidence 99999999999999986
No 23
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=99.46 E-value=6.5e-13 Score=140.07 Aligned_cols=156 Identities=20% Similarity=0.238 Sum_probs=119.9
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc-------CCCCCCCeEEEEccHHHHHHhhcccCc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF-------GFTQDKSLKVHITDGIKFVREMKSSSA 600 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F-------gl~~~~rl~v~i~Da~~~l~~~~~~~~ 600 (759)
+...+|||+|+|.|...+-|.++-...+|+-||+||.|+++|++.- |--.|+|++|+++||.+|++..+
T Consensus 288 ~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~---- 363 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAA---- 363 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhc----
Confidence 5678999999999999888888733669999999999999999554 22368999999999999999876
Q ss_pred ccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCC
Q 004354 601 TDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 680 (759)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~ 680 (759)
..||+||+|+-+++..+ -..+++.||+..++++|+++|++|+...+.
T Consensus 364 ----------------------------~~fD~vIVDl~DP~tps-----~~rlYS~eFY~ll~~~l~e~Gl~VvQags~ 410 (508)
T COG4262 364 ----------------------------DMFDVVIVDLPDPSTPS-----IGRLYSVEFYRLLSRHLAETGLMVVQAGSP 410 (508)
T ss_pred ----------------------------ccccEEEEeCCCCCCcc-----hhhhhhHHHHHHHHHhcCcCceEEEecCCC
Confidence 58999999996654221 467899999999999999999999987554
Q ss_pred --ChhHHHHHHHHHHHhcCceEEEe--ecC-CccEEEEEecCCCC
Q 004354 681 --SQATKDMVISRMKMVFNHLFCLQ--LEE-DVNLVLFGLSSESC 720 (759)
Q Consensus 681 --~~~~~~~v~~~l~~vF~~v~~~~--~~~-~~N~Vl~a~~~~~~ 720 (759)
.+...-.+.+++++.=-.++-+. ++. +..-.++|.+.+..
T Consensus 411 y~tp~vfw~i~aTik~AG~~~~Pyhv~VPTFGeWGf~l~~~~~~~ 455 (508)
T COG4262 411 YFTPRVFWRIDATIKSAGYRVWPYHVHVPTFGEWGFILAAPGDAD 455 (508)
T ss_pred ccCCceeeeehhHHHhCcceeeeeEEecCcccccceeecccccCC
Confidence 23344456788877654444333 333 33446777777643
No 24
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.44 E-value=8.6e-13 Score=132.17 Aligned_cols=100 Identities=29% Similarity=0.437 Sum_probs=82.2
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC--CcccEEEeCC----C
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--GGLDALMEPE----L 140 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~--gtfD~Ii~~~----~ 140 (759)
.++.++||+|||.|+.+.+|++.|+. |+++|+|+.+++.+.+.+....-+++..+.|+.+.. +.||+|++.. .
T Consensus 29 ~~~g~~LDlgcG~GRNalyLA~~G~~-VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~yD~I~st~v~~fL 107 (192)
T PF03848_consen 29 LKPGKALDLGCGEGRNALYLASQGFD-VTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPEEYDFIVSTVVFMFL 107 (192)
T ss_dssp S-SSEEEEES-TTSHHHHHHHHTT-E-EEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TTTEEEEEEESSGGGS
T ss_pred cCCCcEEEcCCCCcHHHHHHHHCCCe-EEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccCCcCEEEEEEEeccC
Confidence 35689999999999999999999996 999999999999998877666777999999998776 8899999743 2
Q ss_pred ChhHHHHHHHHHHHhcccCcEEEEEEc
Q 004354 141 GHKLGNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 141 ~~~~~~~~l~ei~rvLkpGG~liiit~ 167 (759)
....+..+++.+...++|||++++.++
T Consensus 108 ~~~~~~~i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 108 QRELRPQIIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp -GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence 333488899999999999999998775
No 25
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.44 E-value=1.6e-13 Score=139.48 Aligned_cols=101 Identities=24% Similarity=0.383 Sum_probs=91.2
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC---CcccEEEeCCCChhH
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ---GGLDALMEPELGHKL 144 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~---gtfD~Ii~~~~~~~~ 144 (759)
++.+|||+|||-|.+++.|++.|+ +|||+|+|+.+|+.|+.++....-.++|.+..++++. ++||+|+|.+..++.
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~Ga-~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv 137 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLGA-SVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHV 137 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCCC-eeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHcc
Confidence 678999999999999999999996 4999999999999999988777777889998888877 699999999876655
Q ss_pred --HHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 145 --GNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 145 --~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
+..+++.+.+++||||.+++.|...
T Consensus 138 ~dp~~~~~~c~~lvkP~G~lf~STinr 164 (243)
T COG2227 138 PDPESFLRACAKLVKPGGILFLSTINR 164 (243)
T ss_pred CCHHHHHHHHHHHcCCCcEEEEecccc
Confidence 8889999999999999999999764
No 26
>PLN02244 tocopherol O-methyltransferase
Probab=99.44 E-value=1.4e-12 Score=143.21 Aligned_cols=101 Identities=21% Similarity=0.378 Sum_probs=86.3
Q ss_pred CCCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccCC---CcccEEEeCCC
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ---GGLDALMEPEL 140 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~~---gtfD~Ii~~~~ 140 (759)
.++.+|||||||+|.++..|++. |. +|+|+|+|+.+++.++++....+ .+++|+++|+.+++ ++||+|++...
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~-~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~ 195 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGA-NVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMES 195 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCc
Confidence 46689999999999999999986 44 59999999999999988765433 46999999998876 89999999775
Q ss_pred ChhH--HHHHHHHHHHhcccCcEEEEEEcC
Q 004354 141 GHKL--GNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 141 ~~~~--~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
.++. ...+++++.|+|||||++++.++.
T Consensus 196 ~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~ 225 (340)
T PLN02244 196 GEHMPDKRKFVQELARVAAPGGRIIIVTWC 225 (340)
T ss_pred hhccCCHHHHHHHHHHHcCCCcEEEEEEec
Confidence 5443 788999999999999999998864
No 27
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.43 E-value=3.8e-13 Score=138.30 Aligned_cols=134 Identities=24% Similarity=0.402 Sum_probs=98.1
Q ss_pred CHHHHHHHHhhcCCCCccccccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHH
Q 004354 27 SKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISD 106 (759)
Q Consensus 27 ~~~yWd~~y~~~~~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~ 106 (759)
+.+||+++|++.. ..++.-...+.+...+.. +. ..++.+||+.|||.|.....|++.|+. |+|+|+|+.+|+.
T Consensus 2 ~~~~W~~~w~~~~--~~w~~~~~~p~L~~~~~~-l~---~~~~~rvLvPgCG~g~D~~~La~~G~~-VvGvDls~~Ai~~ 74 (218)
T PF05724_consen 2 DPEFWEERWQEGQ--TPWDQGEPNPALVEYLDS-LA---LKPGGRVLVPGCGKGYDMLWLAEQGHD-VVGVDLSPTAIEQ 74 (218)
T ss_dssp HHHHHHHHHHTT----TT--TTSTHHHHHHHHH-HT---TSTSEEEEETTTTTSCHHHHHHHTTEE-EEEEES-HHHHHH
T ss_pred CHHHHHHHHhcCC--CCCCCCCCCHHHHHHHHh-cC---CCCCCeEEEeCCCChHHHHHHHHCCCe-EEEEecCHHHHHH
Confidence 4689999999873 233333334445544444 22 256779999999999999999999995 9999999999999
Q ss_pred HHHHhcc-------------CCCCcEEEEeecccCC----CcccEEEeCC----CChhHHHHHHHHHHHhcccCcEEEEE
Q 004354 107 MLRRNVR-------------DRSDMRWRVMDMTSMQ----GGLDALMEPE----LGHKLGNQYLSEVKRLLKSGGKFVCL 165 (759)
Q Consensus 107 a~~r~~~-------------~~~~i~f~~~D~~~~~----gtfD~Ii~~~----~~~~~~~~~l~ei~rvLkpGG~liii 165 (759)
+.+.... ...++++.++|+.+++ |+||+|+-.. .....+.++.+.+.++|+|||.++++
T Consensus 75 ~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi 154 (218)
T PF05724_consen 75 AFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLI 154 (218)
T ss_dssp HHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEE
T ss_pred HHHHhccCCCcccccceeeecCCceEEEEcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEE
Confidence 8654321 1235789999999987 7899999644 34456999999999999999996655
Q ss_pred Ec
Q 004354 166 TL 167 (759)
Q Consensus 166 t~ 167 (759)
++
T Consensus 155 ~l 156 (218)
T PF05724_consen 155 TL 156 (218)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 28
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.43 E-value=1.3e-12 Score=132.36 Aligned_cols=108 Identities=18% Similarity=0.258 Sum_probs=86.0
Q ss_pred HHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC--Cccc
Q 004354 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--GGLD 133 (759)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~--gtfD 133 (759)
.+...+.. .++.+|||+|||+|.++..|++.|+. |+|+|+|+.+++.++++....+.++.+.++|+...+ ++||
T Consensus 21 ~l~~~~~~---~~~~~vLDiGcG~G~~a~~la~~g~~-V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD 96 (195)
T TIGR00477 21 AVREAVKT---VAPCKTLDLGCGQGRNSLYLSLAGYD-VRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNEDYD 96 (195)
T ss_pred HHHHHhcc---CCCCcEEEeCCCCCHHHHHHHHCCCe-EEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCCCC
Confidence 34455543 35679999999999999999999874 999999999999998876554445788888876544 7899
Q ss_pred EEEeCCCCh----hHHHHHHHHHHHhcccCcEEEEEEc
Q 004354 134 ALMEPELGH----KLGNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 134 ~Ii~~~~~~----~~~~~~l~ei~rvLkpGG~liiit~ 167 (759)
+|++....+ .....+++++.++|+|||+++++.+
T Consensus 97 ~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~ 134 (195)
T TIGR00477 97 FIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAA 134 (195)
T ss_pred EEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEe
Confidence 999876443 2368899999999999999777654
No 29
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.42 E-value=8.5e-13 Score=140.62 Aligned_cols=145 Identities=21% Similarity=0.279 Sum_probs=109.2
Q ss_pred ccccccccCCCCHHHHHHHHhhcCCCCccccccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhC----C
Q 004354 16 TDLLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG----F 91 (759)
Q Consensus 16 ~~lP~~~~~f~~~~yWd~~y~~~~~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G----~ 91 (759)
+++|..........||.+.++.+ ..|.+.+.|..+...+...+.........+|||+|||+|.++..+++.. .
T Consensus 36 ~ll~~~~~~~~~~~d~~~~~~ar---~~fl~~g~y~~l~~~i~~~l~~~l~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~ 112 (272)
T PRK11088 36 NLLPVQHKRSKDPGDNKEMMQAR---RAFLDAGHYQPLRDAVANLLAERLDEKATALLDIGCGEGYYTHALADALPEITT 112 (272)
T ss_pred EeccccccCCCCCCcCHHHHHHH---HHHHHCCChHHHHHHHHHHHHHhcCCCCCeEEEECCcCCHHHHHHHHhcccccC
Confidence 66776555666677888888766 3444455566666666555543212355789999999999999988652 2
Q ss_pred CeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC---CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEEcC
Q 004354 92 HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ---GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 92 ~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~---gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
..++|+|+|+.+++.|+++. +++.|.++|+.+++ ++||+|++.... ..++++.|+|||||++++++.+
T Consensus 113 ~~v~giD~s~~~l~~A~~~~----~~~~~~~~d~~~lp~~~~sfD~I~~~~~~-----~~~~e~~rvLkpgG~li~~~p~ 183 (272)
T PRK11088 113 MQLFGLDISKVAIKYAAKRY----PQVTFCVASSHRLPFADQSLDAIIRIYAP-----CKAEELARVVKPGGIVITVTPG 183 (272)
T ss_pred CeEEEECCCHHHHHHHHHhC----CCCeEEEeecccCCCcCCceeEEEEecCC-----CCHHHHHhhccCCCEEEEEeCC
Confidence 25999999999999887653 67999999999877 789999986542 3468999999999999999987
Q ss_pred chhh
Q 004354 169 ESHV 172 (759)
Q Consensus 169 ~~~~ 172 (759)
..|.
T Consensus 184 ~~~l 187 (272)
T PRK11088 184 PRHL 187 (272)
T ss_pred Ccch
Confidence 7654
No 30
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.42 E-value=7e-13 Score=131.49 Aligned_cols=136 Identities=18% Similarity=0.241 Sum_probs=96.9
Q ss_pred CCHHHHHHHHhhcCCCCcc--ccccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHH
Q 004354 26 TSKENWDKFFTIRGIGDSF--EWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVV 103 (759)
Q Consensus 26 ~~~~yWd~~y~~~~~~~~~--eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~ 103 (759)
.+.++|++.+... +...| .||... .....+...+.. ..-.++||+|||+|.++..|+.+ +.+++++|+|+.+
T Consensus 4 ~~~~~l~~~la~~-DPW~~~~~~YE~~-K~~~~l~aaLp~---~ry~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~A 77 (201)
T PF05401_consen 4 DNYQLLNRELAND-DPWGFETSWYERR-KYRATLLAALPR---RRYRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRA 77 (201)
T ss_dssp SHHHHHHHHHTSS-SGGGTTT-HHHHH-HHHHHHHHHHTT---SSEEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHH
T ss_pred cHHHHHHHHhCCC-CCCCCCCCHHHHH-HHHHHHHHhcCc---cccceeEecCCCccHHHHHHHHh-hCceEEEeCCHHH
Confidence 3578999998876 23222 244431 112223333443 35578999999999999999988 6789999999999
Q ss_pred HHHHHHHhccCCCCcEEEEeecccCC--CcccEEEeCCCCh-----hHHHHHHHHHHHhcccCcEEEEEEcC
Q 004354 104 ISDMLRRNVRDRSDMRWRVMDMTSMQ--GGLDALMEPELGH-----KLGNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 104 I~~a~~r~~~~~~~i~f~~~D~~~~~--gtfD~Ii~~~~~~-----~~~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
|+.|++|.. ..++++|+++|+.+.. ++||+|++.+..+ .....++..+...|+|||.+++-+..
T Consensus 78 l~~Ar~Rl~-~~~~V~~~~~dvp~~~P~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~r 148 (201)
T PF05401_consen 78 LARARERLA-GLPHVEWIQADVPEFWPEGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHAR 148 (201)
T ss_dssp HHHHHHHTT-T-SSEEEEES-TTT---SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred HHHHHHhcC-CCCCeEEEECcCCCCCCCCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 999999985 4579999999997765 9999999987433 33778999999999999999999874
No 31
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.38 E-value=3.3e-09 Score=127.04 Aligned_cols=112 Identities=16% Similarity=0.208 Sum_probs=82.9
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC--CCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 530 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT--QDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 530 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~--~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
..+||.+|.|+|+++..+... +..+|++||+++..++.|++++.+. ..++++++.+|+.+|++...
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~----------- 606 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAR----------- 606 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcC-----------
Confidence 479999999999999888875 3447999999999999999998332 22589999999999987642
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCC----ChHHHHHHHHHccCcCcEEEEEe
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF----VEGSFLLTVKDALSEQGLFIVNL 677 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f----~~~~fl~~~~~~L~~~Gilv~N~ 677 (759)
.+||+||+|...-.....+ ...+ .-.+++..+.++|+|||+|++-.
T Consensus 607 ---------------------~~fDlIilDPP~f~~~~~~---~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~ 656 (702)
T PRK11783 607 ---------------------EQFDLIFIDPPTFSNSKRM---EDSFDVQRDHVALIKDAKRLLRPGGTLYFSN 656 (702)
T ss_pred ---------------------CCcCEEEECCCCCCCCCcc---chhhhHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 5799999985332111000 0000 02457888889999999998754
No 32
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=99.37 E-value=1.2e-12 Score=135.30 Aligned_cols=146 Identities=23% Similarity=0.358 Sum_probs=117.3
Q ss_pred hHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc-----CCCCC
Q 004354 504 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF-----GFTQD 578 (759)
Q Consensus 504 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F-----gl~~~ 578 (759)
+.| +.|++++++..+ ++|++|||||.|.|...+-...|-..-+|..+|||..|+++.++|| |+ ++
T Consensus 105 ~~Y-qemi~~l~l~s~--------~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy-~~ 174 (337)
T KOG1562|consen 105 FAY-QEMIAHLALCSH--------PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGY-EG 174 (337)
T ss_pred ccc-eeeeeccccccC--------CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhccc-CC
Confidence 445 568888888776 7899999999999987666555533349999999999999999999 65 68
Q ss_pred CCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHH
Q 004354 579 KSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGS 658 (759)
Q Consensus 579 ~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~ 658 (759)
+++.+++|||..|++..+ .+.||+||+|. +|+.+ |...++...
T Consensus 175 ~~v~l~iGDG~~fl~~~~-------------------------------~~~~dVii~ds--sdpvg----pa~~lf~~~ 217 (337)
T KOG1562|consen 175 KKVKLLIGDGFLFLEDLK-------------------------------ENPFDVIITDS--SDPVG----PACALFQKP 217 (337)
T ss_pred CceEEEeccHHHHHHHhc-------------------------------cCCceEEEEec--CCccc----hHHHHHHHH
Confidence 999999999999999976 37899999966 44443 788899999
Q ss_pred HHHHHHHccCcCcEEEEEecCCChhHH----HHHHHHHHHhcCc
Q 004354 659 FLLTVKDALSEQGLFIVNLVSRSQATK----DMVISRMKMVFNH 698 (759)
Q Consensus 659 fl~~~~~~L~~~Gilv~N~~~~~~~~~----~~v~~~l~~vF~~ 698 (759)
+++.+++.|+++|+++..- .+-+++ ....+..+.+|+.
T Consensus 218 ~~~~v~~aLk~dgv~~~q~--ec~wl~~~~i~e~r~~~~~~f~~ 259 (337)
T KOG1562|consen 218 YFGLVLDALKGDGVVCTQG--ECMWLHLDYIKEGRSFCYVIFDL 259 (337)
T ss_pred HHHHHHHhhCCCcEEEEec--ceehHHHHHHHHHHHhHHHhcCc
Confidence 9999999999999988654 444444 4445556677874
No 33
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.36 E-value=4.6e-12 Score=122.92 Aligned_cols=102 Identities=24% Similarity=0.348 Sum_probs=86.2
Q ss_pred CCCCeEEEECCCcchhHHHHHHh-C-CCeEEEEeCCHHHHHHHHHHhcc-CCCCcEEEEeecccCC----CcccEEEeCC
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVR-DRSDMRWRVMDMTSMQ----GGLDALMEPE 139 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~-G-~~~VtgIDiS~~~I~~a~~r~~~-~~~~i~f~~~D~~~~~----gtfD~Ii~~~ 139 (759)
+.+.+|||+|||+|.++..|++. + ..+++|+|+|+.+++.|++++.. ..++++|.++|+++++ +.||+|++..
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~ 81 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNG 81 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEES
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcC
Confidence 35789999999999999999953 2 24699999999999999998754 3457999999999976 5899999987
Q ss_pred CChhH--HHHHHHHHHHhcccCcEEEEEEcC
Q 004354 140 LGHKL--GNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 140 ~~~~~--~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
..++. ...+++++.++|++||.+++..+.
T Consensus 82 ~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 82 VLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp TGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred chhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 65544 778999999999999999999876
No 34
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.36 E-value=5.6e-12 Score=132.57 Aligned_cols=100 Identities=19% Similarity=0.280 Sum_probs=85.4
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC---CcccEEEeCCCChh
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ---GGLDALMEPELGHK 143 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~---gtfD~Ii~~~~~~~ 143 (759)
.+..+|||+|||+|.++..+.+.|. +|+++|+|+.+++.++++. ....|+++|+.+++ ++||+|+++...++
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~~D~s~~~l~~a~~~~----~~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~ 115 (251)
T PRK10258 41 RKFTHVLDAGCGPGWMSRYWRERGS-QVTALDLSPPMLAQARQKD----AADHYLAGDIESLPLATATFDLAWSNLAVQW 115 (251)
T ss_pred cCCCeEEEeeCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhC----CCCCEEEcCcccCcCCCCcEEEEEECchhhh
Confidence 3567999999999999999988765 5999999999999887764 23578999998876 68999999876665
Q ss_pred H--HHHHHHHHHHhcccCcEEEEEEcCchh
Q 004354 144 L--GNQYLSEVKRLLKSGGKFVCLTLAESH 171 (759)
Q Consensus 144 ~--~~~~l~ei~rvLkpGG~liiit~~~~~ 171 (759)
. ...++.++.++|+|||.+++.++....
T Consensus 116 ~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~ 145 (251)
T PRK10258 116 CGNLSTALRELYRVVRPGGVVAFTTLVQGS 145 (251)
T ss_pred cCCHHHHHHHHHHHcCCCeEEEEEeCCCCc
Confidence 4 789999999999999999999987643
No 35
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.35 E-value=3.1e-12 Score=138.78 Aligned_cols=101 Identities=20% Similarity=0.234 Sum_probs=86.7
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccC--CCCcEEEEeecccCC---CcccEEEeCCCCh
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTSMQ---GGLDALMEPELGH 142 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~--~~~i~f~~~D~~~~~---gtfD~Ii~~~~~~ 142 (759)
++.+|||||||+|.++..|++.|+ +|+|||+|+.+++.++++.... ..+++|+++|+.+++ ++||+|++....+
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~-~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLe 209 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGA-TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIE 209 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHH
Confidence 456999999999999999998876 4999999999999998775432 247899999998876 7899999988665
Q ss_pred hH--HHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 143 KL--GNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 143 ~~--~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
+. ...+++++.++|||||.+++.+...
T Consensus 210 Hv~d~~~~L~~l~r~LkPGG~liist~nr 238 (322)
T PLN02396 210 HVANPAEFCKSLSALTIPNGATVLSTINR 238 (322)
T ss_pred hcCCHHHHHHHHHHHcCCCcEEEEEECCc
Confidence 54 8899999999999999999998754
No 36
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.35 E-value=1.3e-11 Score=128.10 Aligned_cols=119 Identities=20% Similarity=0.236 Sum_probs=93.1
Q ss_pred chhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh-CC-CeEEEEeCCHHHHHHHHHHhcc-CCCCcEEEEeec
Q 004354 49 EWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GF-HGITNVDFSKVVISDMLRRNVR-DRSDMRWRVMDM 125 (759)
Q Consensus 49 ~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~-G~-~~VtgIDiS~~~I~~a~~r~~~-~~~~i~f~~~D~ 125 (759)
.....+..+...+.. .++.+|||+|||+|.++..+++. +. .+|+|+|+|+.+++.++++... ..++++++++|+
T Consensus 29 ~~~~~~~~~l~~l~~---~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~ 105 (231)
T TIGR02752 29 RHKKWRKDTMKRMNV---QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNA 105 (231)
T ss_pred chHHHHHHHHHhcCC---CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEech
Confidence 333444445555543 56789999999999999999876 32 3699999999999999887643 235789999999
Q ss_pred ccCC---CcccEEEeCCCChhH--HHHHHHHHHHhcccCcEEEEEEcCch
Q 004354 126 TSMQ---GGLDALMEPELGHKL--GNQYLSEVKRLLKSGGKFVCLTLAES 170 (759)
Q Consensus 126 ~~~~---gtfD~Ii~~~~~~~~--~~~~l~ei~rvLkpGG~liiit~~~~ 170 (759)
.+++ ++||+|++....++. ...+++++.++|+|||++++++..++
T Consensus 106 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~ 155 (231)
T TIGR02752 106 MELPFDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQP 155 (231)
T ss_pred hcCCCCCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEECCCC
Confidence 8765 789999987644433 67899999999999999999876654
No 37
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.34 E-value=2.1e-11 Score=122.57 Aligned_cols=120 Identities=16% Similarity=0.025 Sum_probs=91.5
Q ss_pred CCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeecccCC--CcccEEEeCCCChh
Q 004354 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ--GGLDALMEPELGHK 143 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~~~-~~i~f~~~D~~~~~--gtfD~Ii~~~~~~~ 143 (759)
++.+|||+|||+|.++..++.. ...+|+++|+|+.+++.++++..... .+++++++|+.++. ++||+|++... .
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~~--~ 122 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRAV--A 122 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEccc--c
Confidence 4789999999999999988864 23469999999999999988775543 35999999998876 68999999753 2
Q ss_pred HHHHHHHHHHHhcccCcEEEEEEcCchhhhhhhcccc-CCCceEEEEEe
Q 004354 144 LGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF-RFGWKMSVHAI 191 (759)
Q Consensus 144 ~~~~~l~ei~rvLkpGG~liiit~~~~~~~~~l~~~~-~~~w~v~~~~~ 191 (759)
....+++.+.++|+|||+++++... +....+.... ..||.+.....
T Consensus 123 ~~~~~l~~~~~~LkpGG~lv~~~~~--~~~~~l~~~~~~~~~~~~~~~~ 169 (187)
T PRK00107 123 SLSDLVELCLPLLKPGGRFLALKGR--DPEEEIAELPKALGGKVEEVIE 169 (187)
T ss_pred CHHHHHHHHHHhcCCCeEEEEEeCC--ChHHHHHHHHHhcCceEeeeEE
Confidence 3678999999999999999998643 2222222222 23888665333
No 38
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.34 E-value=7.7e-12 Score=127.16 Aligned_cols=124 Identities=18% Similarity=0.221 Sum_probs=95.5
Q ss_pred CCCCCCeEEEECCCcchhHHHHHHh-CC------CeEEEEeCCHHHHHHHHHHhccC----CCCcEEEEeecccCC---C
Q 004354 65 TSSPPPQILVPGCGNSRLSEHLYDA-GF------HGITNVDFSKVVISDMLRRNVRD----RSDMRWRVMDMTSMQ---G 130 (759)
Q Consensus 65 ~~~~~~~ILDlGCG~G~ls~~L~~~-G~------~~VtgIDiS~~~I~~a~~r~~~~----~~~i~f~~~D~~~~~---g 130 (759)
.+.++.++||++||||.++..+++. +. .+|+.+||||.|+..+++|..+. .+.+.|+++|+++++ .
T Consensus 97 ~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~ 176 (296)
T KOG1540|consen 97 GPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDD 176 (296)
T ss_pred CCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCC
Confidence 3467899999999999999999875 22 57999999999999999987432 245899999999999 8
Q ss_pred cccEEEeCCCCh--hHHHHHHHHHHHhcccCcEEEEEEcCchhhhhhhccccCCCceEEEEE
Q 004354 131 GLDALMEPELGH--KLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHA 190 (759)
Q Consensus 131 tfD~Ii~~~~~~--~~~~~~l~ei~rvLkpGG~liiit~~~~~~~~~l~~~~~~~w~v~~~~ 190 (759)
+||+........ ..+.+.+++++|+|||||+|.|..|.... ...+..+..+|.+.+..
T Consensus 177 s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFskv~--~~~l~~fy~~ysf~Vlp 236 (296)
T KOG1540|consen 177 SFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSKVE--NEPLKWFYDQYSFDVLP 236 (296)
T ss_pred cceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEccccc--cHHHHHHHHhhhhhhhc
Confidence 999998865322 23899999999999999999999997532 12222232355555533
No 39
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.34 E-value=1.6e-12 Score=132.93 Aligned_cols=98 Identities=24% Similarity=0.393 Sum_probs=85.6
Q ss_pred CCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCC--------CcEEEEeecccCCCcccEEEeCCC
Q 004354 69 PPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRS--------DMRWRVMDMTSMQGGLDALMEPEL 140 (759)
Q Consensus 69 ~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~--------~i~f~~~D~~~~~gtfD~Ii~~~~ 140 (759)
+.+|||+|||+|.+++.|++.|. +|+|||+|+.+|+.|+++. ...| .++|.+.|++...+.||+|+|.+.
T Consensus 90 g~~ilDvGCGgGLLSepLArlga-~V~GID~s~~~V~vA~~h~-~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcsev 167 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGA-QVTGIDASDDMVEVANEHK-KMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSEV 167 (282)
T ss_pred CceEEEeccCccccchhhHhhCC-eeEeecccHHHHHHHHHhh-hcCchhccccceeeehhhcchhhcccccceeeeHHH
Confidence 47899999999999999999986 4999999999999998884 3222 367888888888889999999997
Q ss_pred ChhH--HHHHHHHHHHhcccCcEEEEEEcC
Q 004354 141 GHKL--GNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 141 ~~~~--~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
.++. +..++..+.++|||||.+++.+..
T Consensus 168 leHV~dp~~~l~~l~~~lkP~G~lfittin 197 (282)
T KOG1270|consen 168 LEHVKDPQEFLNCLSALLKPNGRLFITTIN 197 (282)
T ss_pred HHHHhCHHHHHHHHHHHhCCCCceEeeehh
Confidence 7766 999999999999999999999864
No 40
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.33 E-value=6.6e-12 Score=132.50 Aligned_cols=102 Identities=15% Similarity=0.224 Sum_probs=87.1
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccCC----CcccEEEeCCCC
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ----GGLDALMEPELG 141 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~~----gtfD~Ii~~~~~ 141 (759)
++.+|||+|||+|.++..|++.|. +|+++|+|+.+++.|+++....+ .+++++++|+.++. ++||+|++....
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl 122 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVL 122 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHH
Confidence 567999999999999999999876 59999999999999988875432 56899999987653 789999998765
Q ss_pred hhH--HHHHHHHHHHhcccCcEEEEEEcCch
Q 004354 142 HKL--GNQYLSEVKRLLKSGGKFVCLTLAES 170 (759)
Q Consensus 142 ~~~--~~~~l~ei~rvLkpGG~liiit~~~~ 170 (759)
++. +..+++++.++|||||+++++.+...
T Consensus 123 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~ 153 (255)
T PRK11036 123 EWVADPKSVLQTLWSVLRPGGALSLMFYNAN 153 (255)
T ss_pred HhhCCHHHHHHHHHHHcCCCeEEEEEEECcc
Confidence 544 78899999999999999998877654
No 41
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.33 E-value=3.4e-12 Score=115.12 Aligned_cols=89 Identities=27% Similarity=0.409 Sum_probs=73.5
Q ss_pred EEEECCCcchhHHHHHHh---CC-CeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC---CcccEEEeCCC-C--
Q 004354 72 ILVPGCGNSRLSEHLYDA---GF-HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ---GGLDALMEPEL-G-- 141 (759)
Q Consensus 72 ILDlGCG~G~ls~~L~~~---G~-~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~---gtfD~Ii~~~~-~-- 141 (759)
|||+|||+|..+..+++. |. .+++|+|+|+.+++.++++......+++|+++|+.+++ ++||+|++... .
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 799999999999999987 32 57999999999999999988666679999999999987 79999999432 2
Q ss_pred --hhHHHHHHHHHHHhcccCc
Q 004354 142 --HKLGNQYLSEVKRLLKSGG 160 (759)
Q Consensus 142 --~~~~~~~l~ei~rvLkpGG 160 (759)
......+++++.++|+|||
T Consensus 81 ~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCC
Confidence 2338999999999999998
No 42
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.32 E-value=1.9e-11 Score=129.56 Aligned_cols=101 Identities=14% Similarity=0.229 Sum_probs=84.7
Q ss_pred CCCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC---CcccEEEeCCCC-
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ---GGLDALMEPELG- 141 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~---gtfD~Ii~~~~~- 141 (759)
.++.+|||||||+|..+..++.. +. +|+|+|+|+.+++.++++... ..++.|.++|+.+.+ ++||+|++....
T Consensus 51 ~~~~~VLDiGcG~G~~a~~la~~~~~-~v~giD~s~~~~~~a~~~~~~-~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~ 128 (263)
T PTZ00098 51 NENSKVLDIGSGLGGGCKYINEKYGA-HVHGVDICEKMVNIAKLRNSD-KNKIEFEANDILKKDFPENTFDMIYSRDAIL 128 (263)
T ss_pred CCCCEEEEEcCCCChhhHHHHhhcCC-EEEEEECCHHHHHHHHHHcCc-CCceEEEECCcccCCCCCCCeEEEEEhhhHH
Confidence 67889999999999999988765 44 699999999999999887643 457999999998765 789999996532
Q ss_pred h---hHHHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 142 H---KLGNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 142 ~---~~~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
| .....++++++++|||||++++..+..
T Consensus 129 h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~ 159 (263)
T PTZ00098 129 HLSYADKKKLFEKCYKWLKPNGILLITDYCA 159 (263)
T ss_pred hCCHHHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence 2 247899999999999999999987643
No 43
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.31 E-value=2.5e-11 Score=121.54 Aligned_cols=123 Identities=14% Similarity=0.006 Sum_probs=90.0
Q ss_pred CCCeEEEECCCcchhHHHHHHhCC-CeEEEEeCCHHHHHHHHHHhccC-CCCcEEEEeecccCC--CcccEEEeCCCChh
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRD-RSDMRWRVMDMTSMQ--GGLDALMEPELGHK 143 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~-~~VtgIDiS~~~I~~a~~r~~~~-~~~i~f~~~D~~~~~--gtfD~Ii~~~~~~~ 143 (759)
++.+|||+|||+|.++..++..+. .+|+++|+|+.+++.++++..+. ..+++++++|+.++. ++||+|++.. ..
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~--~~ 119 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRA--LA 119 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehh--hh
Confidence 367999999999999999876542 46999999999999887776443 346999999998865 7999999975 22
Q ss_pred HHHHHHHHHHHhcccCcEEEEEEcCchhhh-hhhccccCCCceEEEEEeCC
Q 004354 144 LGNQYLSEVKRLLKSGGKFVCLTLAESHVL-GLLFPKFRFGWKMSVHAIPQ 193 (759)
Q Consensus 144 ~~~~~l~ei~rvLkpGG~liiit~~~~~~~-~~l~~~~~~~w~v~~~~~~~ 193 (759)
....+++.+.++|+|||++++......... ..+.+. ...|.++..++..
T Consensus 120 ~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~-~~~~~~~~~~~~~ 169 (181)
T TIGR00138 120 SLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRK-CQVLGVEPLEVPP 169 (181)
T ss_pred CHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHh-hhhcCceEeeccc
Confidence 366788999999999999998753322111 122221 2246666666544
No 44
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.31 E-value=1.4e-11 Score=134.28 Aligned_cols=108 Identities=17% Similarity=0.230 Sum_probs=87.4
Q ss_pred HHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHH--hccCCCCcEEEEeecccCC--Ccc
Q 004354 57 LISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRR--NVRDRSDMRWRVMDMTSMQ--GGL 132 (759)
Q Consensus 57 l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r--~~~~~~~i~f~~~D~~~~~--gtf 132 (759)
+..++.. ..+.+|||||||+|.++..++..|...|+|+|+|+.++.+++.. ......++.|+.+|+.+++ ++|
T Consensus 114 l~~~l~~---l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~F 190 (322)
T PRK15068 114 VLPHLSP---LKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAF 190 (322)
T ss_pred HHHhhCC---CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCc
Confidence 4445542 35689999999999999999999887899999999998765433 2222457999999998887 889
Q ss_pred cEEEeCCCChhH--HHHHHHHHHHhcccCcEEEEEEc
Q 004354 133 DALMEPELGHKL--GNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 133 D~Ii~~~~~~~~--~~~~l~ei~rvLkpGG~liiit~ 167 (759)
|+|+|....++. ...++++++++|+|||.+++.++
T Consensus 191 D~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~ 227 (322)
T PRK15068 191 DTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETL 227 (322)
T ss_pred CEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEE
Confidence 999998765543 78999999999999999998764
No 45
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.31 E-value=1e-11 Score=130.63 Aligned_cols=114 Identities=18% Similarity=0.292 Sum_probs=96.1
Q ss_pred HHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccCCCccc
Q 004354 57 LISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQGGLD 133 (759)
Q Consensus 57 l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~~gtfD 133 (759)
+...+..+...++.+|||||||.|.++.++++. |. +|+|+++|+++.+.+++++...+ .+++++..|..++.+.||
T Consensus 61 ~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v-~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~fD 139 (283)
T COG2230 61 LDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGV-TVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEPFD 139 (283)
T ss_pred HHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCC-EEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccccccc
Confidence 334444455689999999999999999999988 44 59999999999999999876544 369999999999998899
Q ss_pred EEEeCCCChhH----HHHHHHHHHHhcccCcEEEEEEcCchh
Q 004354 134 ALMEPELGHKL----GNQYLSEVKRLLKSGGKFVCLTLAESH 171 (759)
Q Consensus 134 ~Ii~~~~~~~~----~~~~l~ei~rvLkpGG~liiit~~~~~ 171 (759)
.|++....++. ...+|+.++++|+|||++++-+...++
T Consensus 140 rIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~ 181 (283)
T COG2230 140 RIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPD 181 (283)
T ss_pred eeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCC
Confidence 99998755443 889999999999999999998877654
No 46
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.30 E-value=1.8e-11 Score=131.50 Aligned_cols=98 Identities=19% Similarity=0.290 Sum_probs=83.1
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC--CcccEEEeCCCCh---
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--GGLDALMEPELGH--- 142 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~--gtfD~Ii~~~~~~--- 142 (759)
++.+|||+|||+|.++..|++.|+ +|+|+|+|+.+++.++++......++++.+.|+.... +.||+|++....+
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD~I~~~~vl~~l~ 198 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYDFILSTVVLMFLN 198 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCccEEEEcchhhhCC
Confidence 346999999999999999999887 4999999999999998887665567889999987654 7899999976433
Q ss_pred -hHHHHHHHHHHHhcccCcEEEEEE
Q 004354 143 -KLGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 143 -~~~~~~l~ei~rvLkpGG~liiit 166 (759)
.....+++++.++|+|||+++++.
T Consensus 199 ~~~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 199 RERIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 347889999999999999977764
No 47
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.29 E-value=1.8e-11 Score=130.08 Aligned_cols=112 Identities=22% Similarity=0.305 Sum_probs=84.3
Q ss_pred HHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccCCCcc
Q 004354 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQGGL 132 (759)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~~gtf 132 (759)
.+..++..+...++.+|||||||.|.++..+++. |+ +|+||.+|+...+.+++++...+ ..+++.++|..+++++|
T Consensus 50 k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~f 128 (273)
T PF02353_consen 50 KLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGC-HVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGKF 128 (273)
T ss_dssp HHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S-
T ss_pred HHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCc-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCCC
Confidence 3445556666789999999999999999999998 87 49999999999999999886554 46899999999988999
Q ss_pred cEEEeCCCChh----HHHHHHHHHHHhcccCcEEEEEEcC
Q 004354 133 DALMEPELGHK----LGNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 133 D~Ii~~~~~~~----~~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
|.|++....++ ....+|+.+.++|+|||++++-+..
T Consensus 129 D~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~ 168 (273)
T PF02353_consen 129 DRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTIT 168 (273)
T ss_dssp SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEE
T ss_pred CEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecc
Confidence 99999774443 3789999999999999999876554
No 48
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.29 E-value=1.4e-11 Score=130.07 Aligned_cols=95 Identities=16% Similarity=0.125 Sum_probs=81.2
Q ss_pred CCCCeEEEECCCcchhHHHHHHhC-CCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC--CcccEEEeCCCChh
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--GGLDALMEPELGHK 143 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G-~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~--gtfD~Ii~~~~~~~ 143 (759)
.++.+|||+|||+|.++..|++.. ..+|+|+|+|+.|++.++++ +++++++|+.++. ++||+|+++...++
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~~~~~~~fD~v~~~~~l~~ 101 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER------GVDARTGDVRDWKPKPDTDVVVSNAALQW 101 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc------CCcEEEcChhhCCCCCCceEEEEehhhhh
Confidence 567899999999999999998873 23699999999999988653 5889999998765 78999999886666
Q ss_pred H--HHHHHHHHHHhcccCcEEEEEEc
Q 004354 144 L--GNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 144 ~--~~~~l~ei~rvLkpGG~liiit~ 167 (759)
. ...++++++++|||||++++...
T Consensus 102 ~~d~~~~l~~~~~~LkpgG~l~~~~~ 127 (255)
T PRK14103 102 VPEHADLLVRWVDELAPGSWIAVQVP 127 (255)
T ss_pred CCCHHHHHHHHHHhCCCCcEEEEEcC
Confidence 4 78899999999999999998754
No 49
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.29 E-value=5.9e-11 Score=118.44 Aligned_cols=102 Identities=18% Similarity=0.272 Sum_probs=84.4
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC-CcccEEEeCCCCh---
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-GGLDALMEPELGH--- 142 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~-gtfD~Ii~~~~~~--- 142 (759)
.++.+|||+|||+|.++..++..+. +|+++|+|+.+++.++++......+++++++|+.+.. ++||+|+++...+
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~n~p~~~~~ 96 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILFNPPYLPLE 96 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEEECCCCCCCc
Confidence 3557899999999999999998876 6999999999999998887655567889999987655 8999999974211
Q ss_pred --------------------hHHHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 143 --------------------KLGNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 143 --------------------~~~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
.....+++++.++|+|||+++++....
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~ 143 (179)
T TIGR00537 97 DDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSL 143 (179)
T ss_pred chhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEecc
Confidence 115678999999999999999887543
No 50
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.28 E-value=1.9e-11 Score=132.14 Aligned_cols=101 Identities=15% Similarity=0.194 Sum_probs=83.9
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHH--HhccCCCCcEEEEeecccCC--CcccEEEeCCCCh
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLR--RNVRDRSDMRWRVMDMTSMQ--GGLDALMEPELGH 142 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~--r~~~~~~~i~f~~~D~~~~~--gtfD~Ii~~~~~~ 142 (759)
.++.+|||+|||+|.++..++..|...|+|+|+|+.++.++.. +......++.+..+|+.+++ ..||+|+|....+
T Consensus 120 ~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~FD~V~s~gvL~ 199 (314)
T TIGR00452 120 LKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYAFDTVFSMGVLY 199 (314)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCCcCEEEEcchhh
Confidence 4678999999999999999998888789999999999876433 22223356888889988887 7899999988655
Q ss_pred hH--HHHHHHHHHHhcccCcEEEEEEc
Q 004354 143 KL--GNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 143 ~~--~~~~l~ei~rvLkpGG~liiit~ 167 (759)
+. +..++++++++|+|||.+++.++
T Consensus 200 H~~dp~~~L~el~r~LkpGG~Lvletl 226 (314)
T TIGR00452 200 HRKSPLEHLKQLKHQLVIKGELVLETL 226 (314)
T ss_pred ccCCHHHHHHHHHHhcCCCCEEEEEEE
Confidence 44 78899999999999999999875
No 51
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.27 E-value=1.2e-10 Score=117.04 Aligned_cols=153 Identities=14% Similarity=0.093 Sum_probs=102.9
Q ss_pred hhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCC-CeEEEEeCCHHHHHHHHHHhccC-CCCcEEEEeecccC-
Q 004354 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRD-RSDMRWRVMDMTSM- 128 (759)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~-~~VtgIDiS~~~I~~a~~r~~~~-~~~i~f~~~D~~~~- 128 (759)
..+..+...+.. .++.+|||+|||+|.++..+++.+. .+|+++|+|+.+++.++++.... ..+++++++|+...
T Consensus 18 ~~r~~~~~~l~~---~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~ 94 (187)
T PRK08287 18 EVRALALSKLEL---HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIEL 94 (187)
T ss_pred HHHHHHHHhcCC---CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhc
Confidence 444455555543 4678999999999999999988743 36999999999999998876433 24688999887532
Q ss_pred CCcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEEcCchh--hhhhhccccCCCce-EEEEE--e------CCCCCC
Q 004354 129 QGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH--VLGLLFPKFRFGWK-MSVHA--I------PQKSSS 197 (759)
Q Consensus 129 ~gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit~~~~~--~~~~l~~~~~~~w~-v~~~~--~------~~~~~~ 197 (759)
.+.||+|++..... ....+++.+.++|+|||++++.....+. ....++... +|. ++++. + .+...-
T Consensus 95 ~~~~D~v~~~~~~~-~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~--g~~~~~~~~~~~~~~~~~~~~~~~ 171 (187)
T PRK08287 95 PGKADAIFIGGSGG-NLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKC--GVSELDCVQLQVSSLTPLGAGHYF 171 (187)
T ss_pred CcCCCEEEECCCcc-CHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHC--CCCcceEEEEEEEeeeEcCcceee
Confidence 27899999865322 3567899999999999999886543222 122233222 331 12111 1 111112
Q ss_pred CCCceEEEEEEEe
Q 004354 198 EPSLQTFMVVADK 210 (759)
Q Consensus 198 ~~~~~~f~~v~~K 210 (759)
.+..|+|+++++|
T Consensus 172 ~~~~~~~~~~~~~ 184 (187)
T PRK08287 172 KPNNPTFIISCQK 184 (187)
T ss_pred ccCCCEEEEEEEc
Confidence 5677899999887
No 52
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.27 E-value=3.8e-11 Score=121.45 Aligned_cols=146 Identities=21% Similarity=0.313 Sum_probs=102.8
Q ss_pred CCHHHHHHHHhhcCCCCccccccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCC---eEEEEeCCHH
Q 004354 26 TSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFH---GITNVDFSKV 102 (759)
Q Consensus 26 ~~~~yWd~~y~~~~~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~---~VtgIDiS~~ 102 (759)
..+.||+.+|.... ..| +.+...+..-+-.++.. ..+...+|||+|||.|.....+.+.... .|+++|+||.
T Consensus 34 ~~~k~wD~fy~~~~--~rF--fkdR~wL~~Efpel~~~-~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~ 108 (264)
T KOG2361|consen 34 EASKYWDTFYKIHE--NRF--FKDRNWLLREFPELLPV-DEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPR 108 (264)
T ss_pred chhhhhhhhhhhcc--ccc--cchhHHHHHhhHHhhCc-cccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChH
Confidence 36789999999873 222 23322233333333332 1122338999999999999999876221 4999999999
Q ss_pred HHHHHHHHhccCCCCcEEEEeecccCC-------CcccEEEeCC----CChhHHHHHHHHHHHhcccCcEEEEEEcCchh
Q 004354 103 VISDMLRRNVRDRSDMRWRVMDMTSMQ-------GGLDALMEPE----LGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 171 (759)
Q Consensus 103 ~I~~a~~r~~~~~~~i~f~~~D~~~~~-------gtfD~Ii~~~----~~~~~~~~~l~ei~rvLkpGG~liiit~~~~~ 171 (759)
+|+..+++......++...+.|++... +++|.|++.. .........+.+++++|||||.+++-.|+...
T Consensus 109 Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~D 188 (264)
T KOG2361|consen 109 AIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYD 188 (264)
T ss_pred HHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccch
Confidence 999888775444445666677776543 8899888743 44555899999999999999999999998765
Q ss_pred hhhhh
Q 004354 172 VLGLL 176 (759)
Q Consensus 172 ~~~~l 176 (759)
....-
T Consensus 189 laqlR 193 (264)
T KOG2361|consen 189 LAQLR 193 (264)
T ss_pred HHHHh
Confidence 54433
No 53
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.27 E-value=1.9e-11 Score=124.50 Aligned_cols=107 Identities=21% Similarity=0.398 Sum_probs=90.4
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCcccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDE 603 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~ 603 (759)
.++++||.||.|+|..+.++...+| +.+|++||+||...++|+++| |+ +++++++++||.+++.+...
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~--~~~I~~~~gda~~~l~~l~~------ 115 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGL--DDRIEVIEGDALEVLPELAN------ 115 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTG--GGGEEEEES-HHHHHHHHHH------
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCC--CCcEEEEEeccHhhHHHHHh------
Confidence 4678999999999999999998887 479999999999999999998 66 57999999999999998752
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEE
Q 004354 604 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 676 (759)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N 676 (759)
......||+||+|++..++ .++|+.+.++|++||++++.
T Consensus 116 ---------------------~~~~~~fD~VFiDa~K~~y-------------~~y~~~~~~ll~~ggvii~D 154 (205)
T PF01596_consen 116 ---------------------DGEEGQFDFVFIDADKRNY-------------LEYFEKALPLLRPGGVIIAD 154 (205)
T ss_dssp ---------------------TTTTTSEEEEEEESTGGGH-------------HHHHHHHHHHEEEEEEEEEE
T ss_pred ---------------------ccCCCceeEEEEcccccch-------------hhHHHHHhhhccCCeEEEEc
Confidence 1112579999999976643 67999999999999999985
No 54
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.26 E-value=6e-11 Score=124.69 Aligned_cols=101 Identities=15% Similarity=0.090 Sum_probs=82.9
Q ss_pred CCCCeEEEECCCcchhHHHHHHh---CCCeEEEEeCCHHHHHHHHHHhccC--CCCcEEEEeecccCC-CcccEEEeCCC
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDA---GFHGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTSMQ-GGLDALMEPEL 140 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~---G~~~VtgIDiS~~~I~~a~~r~~~~--~~~i~f~~~D~~~~~-gtfD~Ii~~~~ 140 (759)
.++.+|||+|||+|.++..+++. ...+|+|+|+|+.|++.++++.... ..+++++++|+.+++ +.+|+|++...
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~ 134 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFT 134 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhH
Confidence 35689999999999999888763 2236999999999999999987543 237999999998877 77999998654
Q ss_pred Chh----HHHHHHHHHHHhcccCcEEEEEEc
Q 004354 141 GHK----LGNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 141 ~~~----~~~~~l~ei~rvLkpGG~liiit~ 167 (759)
.+. ....++++++++|+|||.+++.+.
T Consensus 135 l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 135 LQFLEPSERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred HHhCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 332 367899999999999999999863
No 55
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.24 E-value=5.5e-11 Score=121.27 Aligned_cols=128 Identities=16% Similarity=0.307 Sum_probs=104.4
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEE-ccHHHHHHhhcccCccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHI-TDGIKFVREMKSSSATD 602 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i-~Da~~~l~~~~~~~~~~ 602 (759)
..+++||.||.++|..+.++...+| +.++++||+||+..+.|+++| |+ ++++.++. +|+++.+....
T Consensus 58 ~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~--~~~i~~~~~gdal~~l~~~~------ 129 (219)
T COG4122 58 SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGV--DDRIELLLGGDALDVLSRLL------ 129 (219)
T ss_pred cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCC--cceEEEEecCcHHHHHHhcc------
Confidence 5789999999999999999999888 779999999999999999998 65 67899999 69999998732
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEE-EecCCC
Q 004354 603 EMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV-NLVSRS 681 (759)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~-N~~~~~ 681 (759)
...||+||+|++.+++ ++||+.+.++|+|||++|+ |+.-..
T Consensus 130 -------------------------~~~fDliFIDadK~~y-------------p~~le~~~~lLr~GGliv~DNvl~~G 171 (219)
T COG4122 130 -------------------------DGSFDLVFIDADKADY-------------PEYLERALPLLRPGGLIVADNVLFGG 171 (219)
T ss_pred -------------------------CCCccEEEEeCChhhC-------------HHHHHHHHHHhCCCcEEEEeecccCC
Confidence 3789999999988864 7899999999999998887 654431
Q ss_pred ----h--hHHHHHHHHHHHhcCceEE
Q 004354 682 ----Q--ATKDMVISRMKMVFNHLFC 701 (759)
Q Consensus 682 ----~--~~~~~v~~~l~~vF~~v~~ 701 (759)
. .-.+..+..+++.+..+..
T Consensus 172 ~v~~~~~~~~~~~~~~~~~~~~~~~~ 197 (219)
T COG4122 172 RVADPSIRDARTQVRGVRDFNDYLLE 197 (219)
T ss_pred ccCCccchhHHHHHHHHHHHHHHHhh
Confidence 2 2334556666766664433
No 56
>PRK04266 fibrillarin; Provisional
Probab=99.24 E-value=3.1e-10 Score=117.51 Aligned_cols=119 Identities=14% Similarity=0.207 Sum_probs=89.0
Q ss_pred ccccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEe
Q 004354 45 EWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVM 123 (759)
Q Consensus 45 eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~ 123 (759)
.|......+...+..-+......++.+|||+|||+|.++..+++. +-..|+|+|+|+.|++.+.+++.. ..++.++.+
T Consensus 49 ~~~~~r~~~~~~ll~~~~~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~-~~nv~~i~~ 127 (226)
T PRK04266 49 EWNPRRSKLAAAILKGLKNFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEE-RKNIIPILA 127 (226)
T ss_pred EECCCccchHHHHHhhHhhCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhh-cCCcEEEEC
Confidence 465544445554544222233467889999999999999999886 223699999999999988776543 368999999
Q ss_pred ecccC------CCcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEE
Q 004354 124 DMTSM------QGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVC 164 (759)
Q Consensus 124 D~~~~------~gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~lii 164 (759)
|+.+. ...||+|++.....+....+++++.++|||||++++
T Consensus 128 D~~~~~~~~~l~~~~D~i~~d~~~p~~~~~~L~~~~r~LKpGG~lvI 174 (226)
T PRK04266 128 DARKPERYAHVVEKVDVIYQDVAQPNQAEIAIDNAEFFLKDGGYLLL 174 (226)
T ss_pred CCCCcchhhhccccCCEEEECCCChhHHHHHHHHHHHhcCCCcEEEE
Confidence 98752 267999998654444456679999999999999999
No 57
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.24 E-value=5.5e-11 Score=115.29 Aligned_cols=107 Identities=27% Similarity=0.448 Sum_probs=83.5
Q ss_pred hhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC--
Q 004354 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-- 129 (759)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~-- 129 (759)
.+.+.+..+... ..++.+|||+|||+|.++..|.+.|+ +++|+|+|+.+++. ..+.....+.....
T Consensus 8 ~~~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~---------~~~~~~~~~~~~~~~~ 75 (161)
T PF13489_consen 8 AYADLLERLLPR--LKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK---------RNVVFDNFDAQDPPFP 75 (161)
T ss_dssp CHHHHHHHHHTC--TTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH---------TTSEEEEEECHTHHCH
T ss_pred HHHHHHHHHhcc--cCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh---------hhhhhhhhhhhhhhcc
Confidence 344455555531 14688999999999999999998888 69999999999876 23444444433322
Q ss_pred -CcccEEEeCCCChhH--HHHHHHHHHHhcccCcEEEEEEcCch
Q 004354 130 -GGLDALMEPELGHKL--GNQYLSEVKRLLKSGGKFVCLTLAES 170 (759)
Q Consensus 130 -gtfD~Ii~~~~~~~~--~~~~l~ei~rvLkpGG~liiit~~~~ 170 (759)
+.||+|+|....++. ...+++++.++|||||++++.+....
T Consensus 76 ~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~ 119 (161)
T PF13489_consen 76 DGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNRD 119 (161)
T ss_dssp SSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred ccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence 899999998876665 89999999999999999999997643
No 58
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.24 E-value=8.6e-11 Score=135.04 Aligned_cols=101 Identities=20% Similarity=0.313 Sum_probs=85.8
Q ss_pred CCCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC---CcccEEEeCCCCh
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ---GGLDALMEPELGH 142 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~---gtfD~Ii~~~~~~ 142 (759)
.++.+|||||||+|.++..|++. +. +|+|+|+|+.+++.|+++......+++|.++|+.+.+ ++||+|+|....+
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~l~ 343 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAENFDV-HVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDVIYSRDTIL 343 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhcCC-EEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEEEEECCccc
Confidence 56789999999999999988876 44 6999999999999998876544457899999998765 6899999977554
Q ss_pred hH--HHHHHHHHHHhcccCcEEEEEEcC
Q 004354 143 KL--GNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 143 ~~--~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
+. ...++++++|+|+|||++++.++.
T Consensus 344 h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 371 (475)
T PLN02336 344 HIQDKPALFRSFFKWLKPGGKVLISDYC 371 (475)
T ss_pred ccCCHHHHHHHHHHHcCCCeEEEEEEec
Confidence 44 789999999999999999998764
No 59
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.23 E-value=7.2e-11 Score=124.62 Aligned_cols=96 Identities=23% Similarity=0.308 Sum_probs=82.6
Q ss_pred CCCCeEEEECCCcchhHHHHHHhC-CCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC--CcccEEEeCCCChh
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--GGLDALMEPELGHK 143 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G-~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~--gtfD~Ii~~~~~~~ 143 (759)
.++.+|||||||+|.++..+++.. ..+|+|+|+|+.+++.++++. +++.|+.+|+.++. ++||+|+++...++
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~----~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~ 105 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL----PDCQFVEADIASWQPPQALDLIFANASLQW 105 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC----CCCeEEECchhccCCCCCccEEEEccChhh
Confidence 567899999999999999998763 347999999999999888764 56899999997765 78999999887665
Q ss_pred H--HHHHHHHHHHhcccCcEEEEEE
Q 004354 144 L--GNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 144 ~--~~~~l~ei~rvLkpGG~liiit 166 (759)
. ...+++++.++|+|||.+++..
T Consensus 106 ~~d~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 106 LPDHLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred CCCHHHHHHHHHHhcCCCcEEEEEC
Confidence 4 7789999999999999998864
No 60
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.22 E-value=2.9e-10 Score=115.50 Aligned_cols=154 Identities=14% Similarity=0.174 Sum_probs=103.6
Q ss_pred hhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh-C-CCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccc
Q 004354 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTS 127 (759)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~-G-~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~ 127 (759)
.++......+.. .++.+|||+|||+|.++..++.. + ..+|+++|+++.+++.++++....+ .++.++++|+.+
T Consensus 27 ~~r~~~l~~l~~---~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~ 103 (198)
T PRK00377 27 EIRALALSKLRL---RKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPE 103 (198)
T ss_pred HHHHHHHHHcCC---CCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhh
Confidence 344444444443 67889999999999999988764 3 2469999999999999988765443 578999999876
Q ss_pred CC----CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEEcCchhhhhhhcccc-CCCceEEEEEeCCCCC------
Q 004354 128 MQ----GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF-RFGWKMSVHAIPQKSS------ 196 (759)
Q Consensus 128 ~~----gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit~~~~~~~~~l~~~~-~~~w~v~~~~~~~~~~------ 196 (759)
.. +.||+|++... ......+++.+.++|+|||++++....... ........ ..+|..++..+.....
T Consensus 104 ~l~~~~~~~D~V~~~~~-~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~-~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~ 181 (198)
T PRK00377 104 ILFTINEKFDRIFIGGG-SEKLKEIISASWEIIKKGGRIVIDAILLET-VNNALSALENIGFNLEITEVIIAKGMKTKVG 181 (198)
T ss_pred hHhhcCCCCCEEEECCC-cccHHHHHHHHHHHcCCCcEEEEEeecHHH-HHHHHHHHHHcCCCeEEEEEehhhcccccCC
Confidence 42 68999998542 223678999999999999999875543332 22222222 2355555444432111
Q ss_pred --CCCCceEEEEEEEe
Q 004354 197 --SEPSLQTFMVVADK 210 (759)
Q Consensus 197 --~~~~~~~f~~v~~K 210 (759)
-...-|+|+++.+|
T Consensus 182 ~~~~~~npv~~~~~~~ 197 (198)
T PRK00377 182 TAMMTRNPIFIISGEK 197 (198)
T ss_pred cEeecCCCEEEEEEec
Confidence 13445777777654
No 61
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.22 E-value=4.8e-11 Score=121.64 Aligned_cols=119 Identities=17% Similarity=0.175 Sum_probs=89.5
Q ss_pred CCCeEEEECCCcchhHHHHHHhC-CCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeec-ccCC-----CcccEEEeCC
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDM-TSMQ-----GGLDALMEPE 139 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G-~~~VtgIDiS~~~I~~a~~r~~~~~-~~i~f~~~D~-~~~~-----gtfD~Ii~~~ 139 (759)
++.+|||+|||+|.++..+++.. ..+|+|+|+|+.+++.++++..... +++.++++|+ ..++ ++||+|++..
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 56799999999999999998763 3469999999999999988775433 5799999999 4432 7899999854
Q ss_pred CChh----------HHHHHHHHHHHhcccCcEEEEEEcCchhhhhhhcccc-CCCceEE
Q 004354 140 LGHK----------LGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF-RFGWKMS 187 (759)
Q Consensus 140 ~~~~----------~~~~~l~ei~rvLkpGG~liiit~~~~~~~~~l~~~~-~~~w~v~ 187 (759)
..++ ....+++++.++|+|||.+++.+.....+. .++... ..+|..+
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~-~~~~~~~~~g~~~~ 177 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAE-YMLEVLSAEGGFLV 177 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHH-HHHHHHHhCccccc
Confidence 3221 147899999999999999999886544333 233333 3467555
No 62
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.22 E-value=5.1e-11 Score=108.80 Aligned_cols=109 Identities=17% Similarity=0.200 Sum_probs=84.0
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc-CCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004354 530 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF-GFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 608 (759)
Q Consensus 530 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F-gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~ 608 (759)
..+||.||.|.|.++..+.+.+|..+|++||++|.+++.|++.+ .....++++++.+|+ .+....
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~------------- 67 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDF------------- 67 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTT-------------
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCccc-------------
Confidence 46899999999999999999888999999999999999999998 223478999999998 332221
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 004354 609 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 677 (759)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~ 677 (759)
..+||+|+++..... .+ ...--...+|+.+++.|+|||+|+++.
T Consensus 68 -------------------~~~~D~v~~~~~~~~---~~---~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 68 -------------------LEPFDLVICSGFTLH---FL---LPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp -------------------SSCEEEEEECSGSGG---GC---CHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -------------------CCCCCEEEECCCccc---cc---cchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 256999999551110 00 000113578999999999999999974
No 63
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.21 E-value=8.2e-11 Score=116.59 Aligned_cols=111 Identities=21% Similarity=0.305 Sum_probs=87.8
Q ss_pred HHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCC-eEEEEeCCHHHHHHHHHHhccCCCC-cEEEEeecccCC--C
Q 004354 55 DPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFH-GITNVDFSKVVISDMLRRNVRDRSD-MRWRVMDMTSMQ--G 130 (759)
Q Consensus 55 ~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~-~VtgIDiS~~~I~~a~~r~~~~~~~-i~f~~~D~~~~~--g 130 (759)
..+.+++.. .+..+|||+|||+|.++..++..+.. .|+++|+|+.+++.++++....... +++...|+.+.. +
T Consensus 21 ~lL~~~l~~---~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~ 97 (170)
T PF05175_consen 21 RLLLDNLPK---HKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDG 97 (170)
T ss_dssp HHHHHHHHH---HTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTT
T ss_pred HHHHHHHhh---ccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccccccc
Confidence 355666654 35789999999999999999988654 6999999999999998887655444 999999987654 7
Q ss_pred cccEEEeCCCCh---h----HHHHHHHHHHHhcccCcEEEEEEcC
Q 004354 131 GLDALMEPELGH---K----LGNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 131 tfD~Ii~~~~~~---~----~~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
.||+|+++...+ . ...+++++..+.|+|||.++++...
T Consensus 98 ~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~ 142 (170)
T PF05175_consen 98 KFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINS 142 (170)
T ss_dssp CEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred ceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEeec
Confidence 999999986221 1 3789999999999999999776543
No 64
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.19 E-value=1.7e-10 Score=119.43 Aligned_cols=101 Identities=21% Similarity=0.273 Sum_probs=86.0
Q ss_pred CCCeEEEECCCcchhHHHHHHhCC-CeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC---CcccEEEeCCCChh
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ---GGLDALMEPELGHK 143 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~-~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~---gtfD~Ii~~~~~~~ 143 (759)
.+.+|||+|||+|.++..+++.+. .+++++|+|+.+++.++++.. +++.++++|+.+.+ ++||+|++....++
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~ 110 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS---ENVQFICGDAEKLPLEDSSFDLIVSNLALQW 110 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC---CCCeEEecchhhCCCCCCceeEEEEhhhhhh
Confidence 347899999999999999998864 358999999999998887753 47899999998876 78999999876655
Q ss_pred H--HHHHHHHHHHhcccCcEEEEEEcCchh
Q 004354 144 L--GNQYLSEVKRLLKSGGKFVCLTLAESH 171 (759)
Q Consensus 144 ~--~~~~l~ei~rvLkpGG~liiit~~~~~ 171 (759)
. ...++.++.++|+|||.+++.++....
T Consensus 111 ~~~~~~~l~~~~~~L~~~G~l~~~~~~~~~ 140 (240)
T TIGR02072 111 CDDLSQALSELARVLKPGGLLAFSTFGPGT 140 (240)
T ss_pred ccCHHHHHHHHHHHcCCCcEEEEEeCCccC
Confidence 4 788999999999999999999876654
No 65
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.19 E-value=4.5e-10 Score=104.07 Aligned_cols=100 Identities=16% Similarity=0.125 Sum_probs=80.7
Q ss_pred CCCCeEEEECCCcchhHHHHHHhC-CCeEEEEeCCHHHHHHHHHHhccC-CCCcEEEEeecccCC----CcccEEEeCCC
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRD-RSDMRWRVMDMTSMQ----GGLDALMEPEL 140 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G-~~~VtgIDiS~~~I~~a~~r~~~~-~~~i~f~~~D~~~~~----gtfD~Ii~~~~ 140 (759)
.++.+|||+|||+|.++..+++.. ..+|+++|+|+.+++.++++.... ..+++++..|+.... .+||+|++...
T Consensus 18 ~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~ 97 (124)
T TIGR02469 18 RPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGS 97 (124)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCc
Confidence 456799999999999999998863 347999999999999998876443 356888888876422 78999999653
Q ss_pred ChhHHHHHHHHHHHhcccCcEEEEEEc
Q 004354 141 GHKLGNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 141 ~~~~~~~~l~ei~rvLkpGG~liiit~ 167 (759)
.. ....+++++.++|+|||++++..+
T Consensus 98 ~~-~~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 98 GG-LLQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred ch-hHHHHHHHHHHHcCCCCEEEEEec
Confidence 32 356899999999999999998754
No 66
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.19 E-value=1.5e-10 Score=118.13 Aligned_cols=95 Identities=11% Similarity=-0.018 Sum_probs=75.7
Q ss_pred CCCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC--CcccEEEeCCCChh
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--GGLDALMEPELGHK 143 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~--gtfD~Ii~~~~~~~ 143 (759)
.++.+|||+|||+|.++..|.+. +..+++|+|+|+.+++.|+++. +++.+.++|+.+.. ++||+|++....++
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~----~~~~~~~~d~~~~~~~~sfD~V~~~~vL~h 117 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL----PNINIIQGSLFDPFKDNFFDLVLTKGVLIH 117 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC----CCCcEEEeeccCCCCCCCEEEEEECChhhh
Confidence 35678999999999999999876 3456999999999999987764 46788999988732 79999999775433
Q ss_pred ----HHHHHHHHHHHhcccCcEEEEEEc
Q 004354 144 ----LGNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 144 ----~~~~~l~ei~rvLkpGG~liiit~ 167 (759)
...++++++.|++ ++++++..+
T Consensus 118 l~p~~~~~~l~el~r~~--~~~v~i~e~ 143 (204)
T TIGR03587 118 INPDNLPTAYRELYRCS--NRYILIAEY 143 (204)
T ss_pred CCHHHHHHHHHHHHhhc--CcEEEEEEe
Confidence 3678889999987 456666654
No 67
>PRK14967 putative methyltransferase; Provisional
Probab=99.18 E-value=2.5e-10 Score=118.17 Aligned_cols=101 Identities=18% Similarity=0.185 Sum_probs=82.0
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC--CcccEEEeCCCCh--
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--GGLDALMEPELGH-- 142 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~--gtfD~Ii~~~~~~-- 142 (759)
.++.+|||+|||+|.++..++..+..+++++|+|+.+++.++++......++.++++|+.+.. +.||+|+++....
T Consensus 35 ~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~~~ 114 (223)
T PRK14967 35 GPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVSNPPYVPA 114 (223)
T ss_pred CCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEECCCCCCC
Confidence 467899999999999999998877767999999999999998877554456889999987643 7899999964110
Q ss_pred ---------------------hHHHHHHHHHHHhcccCcEEEEEEc
Q 004354 143 ---------------------KLGNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 143 ---------------------~~~~~~l~ei~rvLkpGG~liiit~ 167 (759)
.....+++++.++|+|||+++++.-
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~ 160 (223)
T PRK14967 115 PPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQS 160 (223)
T ss_pred CcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 1146788999999999999998653
No 68
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.18 E-value=2e-10 Score=119.99 Aligned_cols=101 Identities=11% Similarity=0.046 Sum_probs=83.4
Q ss_pred CCCCeEEEECCCcchhHHHHHHhC---CCeEEEEeCCHHHHHHHHHHhccC--CCCcEEEEeecccCC-CcccEEEeCCC
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAG---FHGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTSMQ-GGLDALMEPEL 140 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G---~~~VtgIDiS~~~I~~a~~r~~~~--~~~i~f~~~D~~~~~-gtfD~Ii~~~~ 140 (759)
.++.+|||+|||+|.++..+++.. ..+|+|+|+|+.|++.|+++.... ..+++++++|+.+.+ ..+|+|++...
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~ 131 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFT 131 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecc
Confidence 356799999999999999998752 236999999999999998886442 246899999999887 67999998765
Q ss_pred Chh----HHHHHHHHHHHhcccCcEEEEEEc
Q 004354 141 GHK----LGNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 141 ~~~----~~~~~l~ei~rvLkpGG~liiit~ 167 (759)
.++ ....++++++++|+|||.+++...
T Consensus 132 l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 132 LQFLPPEDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCeEEEEeec
Confidence 443 267899999999999999998864
No 69
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.16 E-value=1.6e-08 Score=116.74 Aligned_cols=131 Identities=16% Similarity=0.096 Sum_probs=94.1
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 608 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~ 608 (759)
..+-+|.||.|.|.....+...+|+..+.+||+....+.-|-+...-..-.+++++.+|+..+....+
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~------------ 414 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLP------------ 414 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcC------------
Confidence 34678999999999888899999999999999998877766554311122578999988766555543
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChhHHHHH
Q 004354 609 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMV 688 (759)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~~~~~v 688 (759)
+..+|.|.+-- +||..--.-.-..+++++||+.+.+.|+|||.+- +.+.+..+.+.+
T Consensus 415 -------------------~~sv~~i~i~F--PDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~--~~TD~~~y~~~~ 471 (506)
T PRK01544 415 -------------------NNSLDGIYILF--PDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLV--FASDIENYFYEA 471 (506)
T ss_pred -------------------cccccEEEEEC--CCCCCCCCCccccccCHHHHHHHHHhcCCCCEEE--EEcCCHHHHHHH
Confidence 35688888843 3432111112345899999999999999999877 445667766665
Q ss_pred HHHHHH
Q 004354 689 ISRMKM 694 (759)
Q Consensus 689 ~~~l~~ 694 (759)
+..+.+
T Consensus 472 ~~~~~~ 477 (506)
T PRK01544 472 IELIQQ 477 (506)
T ss_pred HHHHHh
Confidence 666554
No 70
>PRK06922 hypothetical protein; Provisional
Probab=99.16 E-value=2.4e-10 Score=131.77 Aligned_cols=99 Identities=16% Similarity=0.248 Sum_probs=81.8
Q ss_pred CCCeEEEECCCcchhHHHHHHhC-CCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC-----CcccEEEeCCCC
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-----GGLDALMEPELG 141 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G-~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~-----gtfD~Ii~~~~~ 141 (759)
++.+|||+|||+|.++..++... ..+|+|+|+|+.|++.|+++......+++++++|+.+++ ++||+|+++...
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vL 497 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSIL 497 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHH
Confidence 46899999999999998887752 246999999999999998876544557888999987754 789999987543
Q ss_pred hh---------------HHHHHHHHHHHhcccCcEEEEEE
Q 004354 142 HK---------------LGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 142 ~~---------------~~~~~l~ei~rvLkpGG~liiit 166 (759)
|+ ...++++++.++|||||++++..
T Consensus 498 H~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 498 HELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred HhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 32 36899999999999999999986
No 71
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.15 E-value=3.4e-10 Score=117.29 Aligned_cols=103 Identities=21% Similarity=0.287 Sum_probs=85.6
Q ss_pred CCCCeEEEECCCcchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHhcc--CCCCcEEEEeecccCC---CcccEEEeCC
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAG--FHGITNVDFSKVVISDMLRRNVR--DRSDMRWRVMDMTSMQ---GGLDALMEPE 139 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G--~~~VtgIDiS~~~I~~a~~r~~~--~~~~i~f~~~D~~~~~---gtfD~Ii~~~ 139 (759)
.++.+|||+|||+|.++..++..+ ..+++++|+++.+++.++++... ...++.+..+|+.+.+ ++||+|++..
T Consensus 50 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~ 129 (239)
T PRK00216 50 RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAF 129 (239)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEec
Confidence 456899999999999999998876 35799999999999999887644 2356899999998765 7899999866
Q ss_pred CChhH--HHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 140 LGHKL--GNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 140 ~~~~~--~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
..++. ...+++++.++|+|||.++++++..
T Consensus 130 ~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~~ 161 (239)
T PRK00216 130 GLRNVPDIDKALREMYRVLKPGGRLVILEFSK 161 (239)
T ss_pred ccccCCCHHHHHHHHHHhccCCcEEEEEEecC
Confidence 44332 7889999999999999999887644
No 72
>PRK08317 hypothetical protein; Provisional
Probab=99.15 E-value=4.7e-10 Score=115.89 Aligned_cols=111 Identities=22% Similarity=0.346 Sum_probs=89.3
Q ss_pred HHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC--
Q 004354 54 RDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG--FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-- 129 (759)
Q Consensus 54 ~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G--~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~-- 129 (759)
+..+...+.. .++.+|||+|||+|.++..+++.. ..+++|+|+|+.+++.++++.....+++++...|+.+.+
T Consensus 8 ~~~~~~~~~~---~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~ 84 (241)
T PRK08317 8 RARTFELLAV---QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFP 84 (241)
T ss_pred HHHHHHHcCC---CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCC
Confidence 3344445443 577899999999999999998763 247999999999999998874444567999999988765
Q ss_pred -CcccEEEeCCCChhH--HHHHHHHHHHhcccCcEEEEEEc
Q 004354 130 -GGLDALMEPELGHKL--GNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 130 -gtfD~Ii~~~~~~~~--~~~~l~ei~rvLkpGG~liiit~ 167 (759)
++||+|++....++. ...+++++.++|+|||.+++...
T Consensus 85 ~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 85 DGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred CCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEec
Confidence 789999997654433 78899999999999999998764
No 73
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.15 E-value=3.1e-10 Score=126.44 Aligned_cols=102 Identities=22% Similarity=0.307 Sum_probs=85.4
Q ss_pred CCCCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCCCcccEEEeCCCChh-
Q 004354 66 SSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQGGLDALMEPELGHK- 143 (759)
Q Consensus 66 ~~~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~gtfD~Ii~~~~~~~- 143 (759)
..++.+|||||||+|.++..+++. |. +|+|+|+|+.+++.++++.. ...+++...|..++.++||+|++....++
T Consensus 165 l~~g~rVLDIGcG~G~~a~~la~~~g~-~V~giDlS~~~l~~A~~~~~--~l~v~~~~~D~~~l~~~fD~Ivs~~~~ehv 241 (383)
T PRK11705 165 LKPGMRVLDIGCGWGGLARYAAEHYGV-SVVGVTISAEQQKLAQERCA--GLPVEIRLQDYRDLNGQFDRIVSVGMFEHV 241 (383)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhc--cCeEEEEECchhhcCCCCCEEEEeCchhhC
Confidence 367889999999999999999876 55 59999999999999988873 23588889998877789999998764433
Q ss_pred ---HHHHHHHHHHHhcccCcEEEEEEcCch
Q 004354 144 ---LGNQYLSEVKRLLKSGGKFVCLTLAES 170 (759)
Q Consensus 144 ---~~~~~l~ei~rvLkpGG~liiit~~~~ 170 (759)
....+++++.++|||||++++.++..+
T Consensus 242 g~~~~~~~l~~i~r~LkpGG~lvl~~i~~~ 271 (383)
T PRK11705 242 GPKNYRTYFEVVRRCLKPDGLFLLHTIGSN 271 (383)
T ss_pred ChHHHHHHHHHHHHHcCCCcEEEEEEccCC
Confidence 367899999999999999999877543
No 74
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.14 E-value=1.3e-10 Score=114.85 Aligned_cols=103 Identities=18% Similarity=0.256 Sum_probs=83.4
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccC-CCCcE-EEEeecccCC----CcccEEEeCCC
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD-RSDMR-WRVMDMTSMQ----GGLDALMEPEL 140 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~-~~~i~-f~~~D~~~~~----gtfD~Ii~~~~ 140 (759)
.....|||+|||||..-..+-......||++|.++.|-+.+.+.+.+. .+++. |++++.++++ +++|+|+|.-.
T Consensus 75 ~~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tlv 154 (252)
T KOG4300|consen 75 SGKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLV 154 (252)
T ss_pred cCccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEE
Confidence 455678999999999987554332335999999999999998887544 45666 9999999998 89999998653
Q ss_pred --ChhHHHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 141 --GHKLGNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 141 --~~~~~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
.+..+.+.|+++.|+|+|||+++++.+..
T Consensus 155 LCSve~~~k~L~e~~rlLRpgG~iifiEHva 185 (252)
T KOG4300|consen 155 LCSVEDPVKQLNEVRRLLRPGGRIIFIEHVA 185 (252)
T ss_pred EeccCCHHHHHHHHHHhcCCCcEEEEEeccc
Confidence 23448999999999999999999998763
No 75
>PRK05785 hypothetical protein; Provisional
Probab=99.13 E-value=5.8e-10 Score=115.68 Aligned_cols=93 Identities=15% Similarity=0.192 Sum_probs=74.8
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC---CcccEEEeCCCChhH
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ---GGLDALMEPELGHKL 144 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~---gtfD~Ii~~~~~~~~ 144 (759)
++.+|||+|||||.++..+++....+|+|+|+|+.|++.++++. .++++|+.+++ ++||+|++....++.
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~-------~~~~~d~~~lp~~d~sfD~v~~~~~l~~~ 123 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD-------DKVVGSFEALPFRDKSFDVVMSSFALHAS 123 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc-------ceEEechhhCCCCCCCEEEEEecChhhcc
Confidence 36799999999999999998873236999999999999887642 46789998887 899999998765543
Q ss_pred --HHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 145 --GNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 145 --~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
..+++++++|+|||. +.++.++.
T Consensus 124 ~d~~~~l~e~~RvLkp~--~~ile~~~ 148 (226)
T PRK05785 124 DNIEKVIAEFTRVSRKQ--VGFIAMGK 148 (226)
T ss_pred CCHHHHHHHHHHHhcCc--eEEEEeCC
Confidence 889999999999994 33444443
No 76
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.13 E-value=9e-12 Score=111.67 Aligned_cols=90 Identities=26% Similarity=0.350 Sum_probs=60.0
Q ss_pred EEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeecccCC-----CcccEEEeCCCChhH-
Q 004354 73 LVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ-----GGLDALMEPELGHKL- 144 (759)
Q Consensus 73 LDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~~~-~~i~f~~~D~~~~~-----gtfD~Ii~~~~~~~~- 144 (759)
||+|||+|.++..+.+. ...+|+|+|+|+.|++.+++++.... ........+..+.. ++||+|++....++.
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 79999999999999887 23469999999999988877775533 23334444333332 499999998876665
Q ss_pred -HHHHHHHHHHhcccCcEE
Q 004354 145 -GNQYLSEVKRLLKSGGKF 162 (759)
Q Consensus 145 -~~~~l~ei~rvLkpGG~l 162 (759)
+..++++++++|+|||++
T Consensus 81 ~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 81 DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -HHHHHHHHTTT-TSS-EE
T ss_pred hHHHHHHHHHHHcCCCCCC
Confidence 889999999999999986
No 77
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.13 E-value=2.5e-10 Score=124.52 Aligned_cols=99 Identities=14% Similarity=0.100 Sum_probs=81.9
Q ss_pred CCCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC---CcccEEEeCCCCh
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ---GGLDALMEPELGH 142 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~---gtfD~Ii~~~~~~ 142 (759)
.++.+|||+|||+|.++..+++. +..+|+++|+|+.+++.++++.. ..+++++.+|+.+++ ++||+|++....+
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~--~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~ 189 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--LKECKIIEGDAEDLPFPTDYADRYVSAGSIE 189 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh--ccCCeEEeccHHhCCCCCCceeEEEEcChhh
Confidence 35679999999999999888765 33469999999999999888653 356899999998876 7899999976544
Q ss_pred hH--HHHHHHHHHHhcccCcEEEEEEc
Q 004354 143 KL--GNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 143 ~~--~~~~l~ei~rvLkpGG~liiit~ 167 (759)
+. ....++++.++|+|||+++++..
T Consensus 190 ~~~d~~~~L~e~~rvLkPGG~LvIi~~ 216 (340)
T PLN02490 190 YWPDPQRGIKEAYRVLKIGGKACLIGP 216 (340)
T ss_pred hCCCHHHHHHHHHHhcCCCcEEEEEEe
Confidence 32 67899999999999999988753
No 78
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.12 E-value=5.6e-10 Score=123.41 Aligned_cols=111 Identities=15% Similarity=0.158 Sum_probs=87.6
Q ss_pred HHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCC-CeEEEEeCCHHHHHHHHHHhccCC----CCcEEEEeecccC
Q 004354 54 RDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDR----SDMRWRVMDMTSM 128 (759)
Q Consensus 54 ~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~-~~VtgIDiS~~~I~~a~~r~~~~~----~~i~f~~~D~~~~ 128 (759)
.+.+.+++.. ....+|||+|||+|.++..+++.+. .+|+++|+|+.+++.++++..... .++++...|+...
T Consensus 217 trllL~~lp~---~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~ 293 (378)
T PRK15001 217 ARFFMQHLPE---NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG 293 (378)
T ss_pred HHHHHHhCCc---ccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc
Confidence 4556666654 3456999999999999999988743 369999999999999988774433 3578888887653
Q ss_pred C--CcccEEEeCCCCh-------hHHHHHHHHHHHhcccCcEEEEEEc
Q 004354 129 Q--GGLDALMEPELGH-------KLGNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 129 ~--gtfD~Ii~~~~~~-------~~~~~~l~ei~rvLkpGG~liiit~ 167 (759)
. ++||+|+|+...| ....++++.+.++|+|||.++++..
T Consensus 294 ~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~n 341 (378)
T PRK15001 294 VEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN 341 (378)
T ss_pred CCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEe
Confidence 3 5899999976433 2367899999999999999999963
No 79
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.11 E-value=6.6e-10 Score=121.91 Aligned_cols=140 Identities=19% Similarity=0.224 Sum_probs=100.7
Q ss_pred CCCCHHHHHHHHhhcC-----CCCccccccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCC-CeEEEE
Q 004354 24 DFTSKENWDKFFTIRG-----IGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF-HGITNV 97 (759)
Q Consensus 24 ~f~~~~yWd~~y~~~~-----~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~-~~VtgI 97 (759)
.|...+||.. |.... ....|.|..- ..-...+...+.. ....+|||+|||+|.++..+++.+. .+|+++
T Consensus 152 ~~~~~~~~~~-y~~~~l~i~~~pgvFs~~~l-D~gt~lLl~~l~~---~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~v 226 (342)
T PRK09489 152 VFDADKFWKE-YQVDGLTVKTLPGVFSRDGL-DVGSQLLLSTLTP---HTKGKVLDVGCGAGVLSAVLARHSPKIRLTLS 226 (342)
T ss_pred CCccccccee-eecCCEEEEeCCCCCCCCCC-CHHHHHHHHhccc---cCCCeEEEeccCcCHHHHHHHHhCCCCEEEEE
Confidence 3666677764 32211 1223444322 2233455555543 3456899999999999999998743 369999
Q ss_pred eCCHHHHHHHHHHhccCCCCcEEEEeecccCC-CcccEEEeCCCChh-------HHHHHHHHHHHhcccCcEEEEEEcC
Q 004354 98 DFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-GGLDALMEPELGHK-------LGNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 98 DiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~-gtfD~Ii~~~~~~~-------~~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
|+|+.+++.++++........++...|+.... +.||+|+++...|+ ....+++++.+.|+|||.++++...
T Consensus 227 Dis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~ 305 (342)
T PRK09489 227 DVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (342)
T ss_pred ECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeC
Confidence 99999999999887665556778888876544 88999999875443 3789999999999999999988743
No 80
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.11 E-value=1.1e-09 Score=112.18 Aligned_cols=102 Identities=22% Similarity=0.289 Sum_probs=85.5
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCC--eEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC---CcccEEEeCCCC
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFH--GITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ---GGLDALMEPELG 141 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~--~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~---gtfD~Ii~~~~~ 141 (759)
.++.+|||+|||+|..+..+++.+.. +++++|+++.+++.++++.. ...++++..+|+.+.+ ++||+|++....
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~-~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~ 116 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE-LPLNIEFIQADAEALPFEDNSFDAVTIAFGL 116 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc-cCCCceEEecchhcCCCCCCcEEEEEEeeee
Confidence 46789999999999999999887653 79999999999999988764 4457899999998875 689999986544
Q ss_pred hh--HHHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 142 HK--LGNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 142 ~~--~~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
++ ....+++++.++|+|||++++.++..
T Consensus 117 ~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 146 (223)
T TIGR01934 117 RNVTDIQKALREMYRVLKPGGRLVILEFSK 146 (223)
T ss_pred CCcccHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 33 27889999999999999999887643
No 81
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.10 E-value=5.1e-10 Score=119.17 Aligned_cols=102 Identities=16% Similarity=0.264 Sum_probs=83.7
Q ss_pred CCCCeEEEECCCcchhHHHHHHh-CC-CeEEEEeCCHHHHHHHHHHhccC-CCCcEEEEeecccCC---CcccEEEeCCC
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDA-GF-HGITNVDFSKVVISDMLRRNVRD-RSDMRWRVMDMTSMQ---GGLDALMEPEL 140 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~-G~-~~VtgIDiS~~~I~~a~~r~~~~-~~~i~f~~~D~~~~~---gtfD~Ii~~~~ 140 (759)
.++.+|||+|||+|..+..++.. |. .+|+++|+|+.+++.++++.... ..+++|.++|+.+++ ++||+|+++..
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v 155 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNCV 155 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcCc
Confidence 57889999999999988777654 44 26999999999999998876433 357899999998876 68999998765
Q ss_pred ChhH--HHHHHHHHHHhcccCcEEEEEEcC
Q 004354 141 GHKL--GNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 141 ~~~~--~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
.++. ...+++++.++|||||++++..+.
T Consensus 156 ~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~ 185 (272)
T PRK11873 156 INLSPDKERVFKEAFRVLKPGGRFAISDVV 185 (272)
T ss_pred ccCCCCHHHHHHHHHHHcCCCcEEEEEEee
Confidence 4432 678999999999999999998753
No 82
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.10 E-value=5.7e-10 Score=117.62 Aligned_cols=120 Identities=19% Similarity=0.298 Sum_probs=89.9
Q ss_pred ccccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHH--HhccCCCCcEEEE
Q 004354 45 EWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLR--RNVRDRSDMRWRV 122 (759)
Q Consensus 45 eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~--r~~~~~~~i~f~~ 122 (759)
||..++.- ..+.+++.. -.+.+|||||||+|..+..|+..|.+.|+|+|.++...-+... ++......+.++-
T Consensus 97 EWrSd~KW--~rl~p~l~~---L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lp 171 (315)
T PF08003_consen 97 EWRSDWKW--DRLLPHLPD---LKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELP 171 (315)
T ss_pred cccccchH--HHHHhhhCC---cCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcC
Confidence 57666432 235566543 3678999999999999999999999999999999987765332 3222222333333
Q ss_pred eecccCC--CcccEEEeCCCChhH--HHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 123 MDMTSMQ--GGLDALMEPELGHKL--GNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 123 ~D~~~~~--gtfD~Ii~~~~~~~~--~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
.-+++++ ++||+|+|.....+. +-.+|.+++..|+|||.+++-|+.-
T Consensus 172 lgvE~Lp~~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi 222 (315)
T PF08003_consen 172 LGVEDLPNLGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVI 222 (315)
T ss_pred cchhhccccCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeee
Confidence 4566666 899999999876655 8899999999999999999999753
No 83
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.10 E-value=8.7e-10 Score=112.63 Aligned_cols=108 Identities=19% Similarity=0.134 Sum_probs=82.6
Q ss_pred hhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh-C-CCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccc
Q 004354 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTS 127 (759)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~-G-~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~ 127 (759)
.+...+.+.+.. .++.+|||+|||+|..+..+++. + ..+|+++|+++.+++.+++++.... .+++++++|+.+
T Consensus 59 ~~~~~~~~~l~~---~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~ 135 (205)
T PRK13944 59 HMVAMMCELIEP---RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKR 135 (205)
T ss_pred HHHHHHHHhcCC---CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCccc
Confidence 344445555543 57789999999999999888875 2 2369999999999999988875543 248999999876
Q ss_pred CC---CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEE
Q 004354 128 MQ---GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 128 ~~---gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit 166 (759)
.. ++||+|++.....+ +..++.++|+|||++++..
T Consensus 136 ~~~~~~~fD~Ii~~~~~~~----~~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 136 GLEKHAPFDAIIVTAAAST----IPSALVRQLKDGGVLVIPV 173 (205)
T ss_pred CCccCCCccEEEEccCcch----hhHHHHHhcCcCcEEEEEE
Confidence 43 78999999875433 3457889999999997754
No 84
>PLN02476 O-methyltransferase
Probab=99.09 E-value=6.5e-10 Score=117.73 Aligned_cols=107 Identities=15% Similarity=0.265 Sum_probs=90.1
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCcccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDE 603 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~ 603 (759)
..+++||.||.|+|..+.++...+| ..+|+++|+||+.+++|+++| |+ .++++++.||+.++|.+...
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl--~~~I~li~GdA~e~L~~l~~------ 188 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGV--SHKVNVKHGLAAESLKSMIQ------ 188 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEEcCHHHHHHHHHh------
Confidence 4678999999999999998888775 558999999999999999998 76 46999999999999987531
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEE
Q 004354 604 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 676 (759)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N 676 (759)
+.....||+||+|++.... .++++.+.++|+|||+++++
T Consensus 189 ---------------------~~~~~~FD~VFIDa~K~~Y-------------~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 189 ---------------------NGEGSSYDFAFVDADKRMY-------------QDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred ---------------------cccCCCCCEEEECCCHHHH-------------HHHHHHHHHhcCCCcEEEEe
Confidence 0112579999999986543 78999999999999998875
No 85
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.09 E-value=3.4e-09 Score=107.38 Aligned_cols=155 Identities=14% Similarity=0.090 Sum_probs=102.9
Q ss_pred hhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhC-CCeEEEEeCCHHHHHHHHHHhccC-CCCcEEEEeecccC
Q 004354 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRD-RSDMRWRVMDMTSM 128 (759)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G-~~~VtgIDiS~~~I~~a~~r~~~~-~~~i~f~~~D~~~~ 128 (759)
...+..+..++.. .++.+|||+|||+|.++..++... ..+|+++|+|+.+++.++++.... ..+++++++|+.+.
T Consensus 26 ~~v~~~l~~~l~~---~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~ 102 (196)
T PRK07402 26 REVRLLLISQLRL---EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPEC 102 (196)
T ss_pred HHHHHHHHHhcCC---CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHH
Confidence 3455556666653 577899999999999999988652 246999999999999998876443 35689999998652
Q ss_pred -C---CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEEcCchhh--hhhhcccc-CCCceEEEEEeCCCC-C----
Q 004354 129 -Q---GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHV--LGLLFPKF-RFGWKMSVHAIPQKS-S---- 196 (759)
Q Consensus 129 -~---gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit~~~~~~--~~~l~~~~-~~~w~v~~~~~~~~~-~---- 196 (759)
. ..+|.++.... .....+++++.++|+|||++++........ ....+... ..+|.+.-..+.... .
T Consensus 103 ~~~~~~~~d~v~~~~~--~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (196)
T PRK07402 103 LAQLAPAPDRVCIEGG--RPIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQLQARNIEVVQAAVNRLETRGFSQ 180 (196)
T ss_pred HhhCCCCCCEEEEECC--cCHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhcCCCCceEEEEEhhhcccccCcC
Confidence 2 45677766432 235789999999999999999998764432 22223222 224544332221110 0
Q ss_pred -CCCCceEEEEEEEe
Q 004354 197 -SEPSLQTFMVVADK 210 (759)
Q Consensus 197 -~~~~~~~f~~v~~K 210 (759)
-....|+|+++.+|
T Consensus 181 ~~~~~~pv~~~~~~~ 195 (196)
T PRK07402 181 VFAAVDPIFILSGEK 195 (196)
T ss_pred eeecCCCEEEEEEEe
Confidence 13556788877655
No 86
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.08 E-value=5.4e-10 Score=115.30 Aligned_cols=98 Identities=19% Similarity=0.177 Sum_probs=81.2
Q ss_pred eEEEECCCcchhHHHHHHhC-CCeEEEEeCCHHHHHHHHHHhccC--CCCcEEEEeecccCC--CcccEEEeCCCChhH-
Q 004354 71 QILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTSMQ--GGLDALMEPELGHKL- 144 (759)
Q Consensus 71 ~ILDlGCG~G~ls~~L~~~G-~~~VtgIDiS~~~I~~a~~r~~~~--~~~i~f~~~D~~~~~--gtfD~Ii~~~~~~~~- 144 (759)
+|||||||+|.++..+++.. ..+|+|+|+|+.+++.++++.... ..+++++..|+...+ ++||+|++....++.
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~~ 81 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHIK 81 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhCC
Confidence 79999999999999998763 236999999999999998887443 346899999986654 889999987644433
Q ss_pred -HHHHHHHHHHhcccCcEEEEEEcC
Q 004354 145 -GNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 145 -~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
...+++++.++|+|||++++.++.
T Consensus 82 ~~~~~l~~~~~~LkpgG~l~i~~~~ 106 (224)
T smart00828 82 DKMDLFSNISRHLKDGGHLVLADFI 106 (224)
T ss_pred CHHHHHHHHHHHcCCCCEEEEEEcc
Confidence 789999999999999999988753
No 87
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.08 E-value=4.2e-10 Score=103.69 Aligned_cols=98 Identities=26% Similarity=0.377 Sum_probs=80.3
Q ss_pred CeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccCC-----CcccEEEeCCCCh
Q 004354 70 PQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ-----GGLDALMEPELGH 142 (759)
Q Consensus 70 ~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~~-----gtfD~Ii~~~~~~ 142 (759)
.+|||+|||+|.++..+++.+..+++|+|+++.+++.++.++.... .+++++++|+.+.. +.||+|+++....
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~~ 81 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPYG 81 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--STT
T ss_pred CEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCCc
Confidence 5899999999999999999984579999999999999988875542 46999999987764 8999999975211
Q ss_pred ----------hHHHHHHHHHHHhcccCcEEEEEEc
Q 004354 143 ----------KLGNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 143 ----------~~~~~~l~ei~rvLkpGG~liiit~ 167 (759)
.....+++++.++|+|||.+++++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 82 PRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp SBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 1257889999999999999998863
No 88
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.07 E-value=9.8e-10 Score=113.64 Aligned_cols=131 Identities=19% Similarity=0.294 Sum_probs=89.7
Q ss_pred HHHHHHHHhhcCCCCcc--ccccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHH
Q 004354 28 KENWDKFFTIRGIGDSF--EWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVIS 105 (759)
Q Consensus 28 ~~yWd~~y~~~~~~~~~--eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~ 105 (759)
.+.|+..|.... -..+ .+...+......+..++......+..+|||+|||+|.++..|++.+.. |+|+|+|+.+++
T Consensus 22 ~~~w~~~y~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~~~-v~~~D~s~~~i~ 99 (230)
T PRK07580 22 FDRWARIYSDAP-VSKVRATVRAGHQRMRDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRGAK-VVASDISPQMVE 99 (230)
T ss_pred cchHHHhhCcCc-hhHHHHHhcchHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcCCE-EEEEECCHHHHH
Confidence 467888876531 1111 112222333344445543211245679999999999999999988765 999999999999
Q ss_pred HHHHHhccCC--CCcEEEEeecccCCCcccEEEeCCCChh----HHHHHHHHHHHhcccCc
Q 004354 106 DMLRRNVRDR--SDMRWRVMDMTSMQGGLDALMEPELGHK----LGNQYLSEVKRLLKSGG 160 (759)
Q Consensus 106 ~a~~r~~~~~--~~i~f~~~D~~~~~gtfD~Ii~~~~~~~----~~~~~l~ei~rvLkpGG 160 (759)
.++++..... .++.|.++|+....+.||+|++....++ ....+++++.+.+++++
T Consensus 100 ~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~ 160 (230)
T PRK07580 100 EARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSL 160 (230)
T ss_pred HHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeE
Confidence 9998875433 3789999996554488999999765422 36778888888765443
No 89
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.07 E-value=9.9e-10 Score=113.19 Aligned_cols=132 Identities=19% Similarity=0.269 Sum_probs=94.4
Q ss_pred HHHHHHHHhhcCCCCcccccc-----chhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHH
Q 004354 28 KENWDKFFTIRGIGDSFEWYA-----EWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKV 102 (759)
Q Consensus 28 ~~yWd~~y~~~~~~~~~eW~~-----~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~ 102 (759)
...|+..|... +...|.. ....+...+..++.. ...++.+|||+|||+|.++..+++.+. .|+|+|+|+.
T Consensus 14 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~ 88 (219)
T TIGR02021 14 FQRWARIYGSG---DPVSRVRQTVREGRAAMRRKLLDWLPK-DPLKGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQ 88 (219)
T ss_pred HHHHHHhhCCc---hhhHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHH
Confidence 56788887643 1112211 112333445555541 124578999999999999999998765 5999999999
Q ss_pred HHHHHHHHhccCC--CCcEEEEeecccCCCcccEEEeCCCCh----hHHHHHHHHHHHhcccCcEEEE
Q 004354 103 VISDMLRRNVRDR--SDMRWRVMDMTSMQGGLDALMEPELGH----KLGNQYLSEVKRLLKSGGKFVC 164 (759)
Q Consensus 103 ~I~~a~~r~~~~~--~~i~f~~~D~~~~~gtfD~Ii~~~~~~----~~~~~~l~ei~rvLkpGG~lii 164 (759)
+++.++++..... .++.|.++|+.+++++||+|++....+ .....+++++.+++++++.+.+
T Consensus 89 ~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 89 MVQMARNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred HHHHHHHHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 9999998875443 378999999988778899999865432 2367889999999987655554
No 90
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.07 E-value=1.6e-09 Score=117.27 Aligned_cols=147 Identities=16% Similarity=0.151 Sum_probs=94.2
Q ss_pred ccccccc-cCCCCHHHHHHHHhhcCCCCccccccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhC--CC
Q 004354 16 TDLLQTL-GDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG--FH 92 (759)
Q Consensus 16 ~~lP~~~-~~f~~~~yWd~~y~~~~~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G--~~ 92 (759)
+.||..+ .+=...+.|++.+... +.|.+..+...+.......... ..++.+|||+|||+|..+..|++.. ..
T Consensus 15 k~lp~~~~yd~~G~~lf~~i~~~p---eYy~tr~E~~il~~~~~~ia~~--~~~~~~iLELGcGtG~~t~~Ll~~l~~~~ 89 (301)
T TIGR03438 15 KTLPPKYFYDARGSELFEQICELP---EYYPTRTEAAILERHADEIAAA--TGAGCELVELGSGSSRKTRLLLDALRQPA 89 (301)
T ss_pred CCCCchhcccchHHHHHHHHHCCC---ccccHHHHHHHHHHHHHHHHHh--hCCCCeEEecCCCcchhHHHHHHhhccCC
Confidence 4555554 2223456788887643 2222222222222222222211 1355789999999999999998874 23
Q ss_pred eEEEEeCCHHHHHHHHHHhccCCCC--cEEEEeecccC-C--Ccc---cE--EEeCC----CChhHHHHHHHHHHHhccc
Q 004354 93 GITNVDFSKVVISDMLRRNVRDRSD--MRWRVMDMTSM-Q--GGL---DA--LMEPE----LGHKLGNQYLSEVKRLLKS 158 (759)
Q Consensus 93 ~VtgIDiS~~~I~~a~~r~~~~~~~--i~f~~~D~~~~-~--gtf---D~--Ii~~~----~~~~~~~~~l~ei~rvLkp 158 (759)
+|+++|+|+.|++.+++++....+. +.++++|+.+. + ..+ +. +++.. ........+|++++++|+|
T Consensus 90 ~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~p 169 (301)
T TIGR03438 90 RYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGP 169 (301)
T ss_pred eEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCC
Confidence 5999999999999998887654444 56789999874 2 333 33 33322 2233478899999999999
Q ss_pred CcEEEEEEc
Q 004354 159 GGKFVCLTL 167 (759)
Q Consensus 159 GG~liiit~ 167 (759)
||.|++...
T Consensus 170 gG~~lig~d 178 (301)
T TIGR03438 170 GGGLLIGVD 178 (301)
T ss_pred CCEEEEecc
Confidence 999987653
No 91
>PLN03075 nicotianamine synthase; Provisional
Probab=99.06 E-value=3.7e-09 Score=112.67 Aligned_cols=162 Identities=13% Similarity=0.186 Sum_probs=108.4
Q ss_pred cccccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHH-hCC--CeEEEEeCCHHHHHHHHHHhcc-C--CCC
Q 004354 44 FEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYD-AGF--HGITNVDFSKVVISDMLRRNVR-D--RSD 117 (759)
Q Consensus 44 ~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~-~G~--~~VtgIDiS~~~I~~a~~r~~~-~--~~~ 117 (759)
|-+|..|..+.+.=...+......++.+|||||||.|.++..+.. ..+ ..++|+|+++.+++.|++.+.. . ..+
T Consensus 99 Fpy~~nY~~L~~lE~~~L~~~~~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~r 178 (296)
T PLN03075 99 FPYYNNYLKLSKLEFDLLSQHVNGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKR 178 (296)
T ss_pred CCchHHHHHHHHHHHHHHHHhhcCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCC
Confidence 456777766665544444332223678999999998866544333 222 3599999999999999988743 2 357
Q ss_pred cEEEEeecccCC---CcccEEEeCCCCh---hHHHHHHHHHHHhcccCcEEEEEEc-Cchhhhhhhcccc-CCCceEEEE
Q 004354 118 MRWRVMDMTSMQ---GGLDALMEPELGH---KLGNQYLSEVKRLLKSGGKFVCLTL-AESHVLGLLFPKF-RFGWKMSVH 189 (759)
Q Consensus 118 i~f~~~D~~~~~---gtfD~Ii~~~~~~---~~~~~~l~ei~rvLkpGG~liiit~-~~~~~~~~l~~~~-~~~w~v~~~ 189 (759)
++|.++|+.+.. +.||+|++..... ....++++++.+.|+|||.+++-+. +...++...+... ..||.+-..
T Consensus 179 V~F~~~Da~~~~~~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G~r~~LYp~v~~~~~~gf~~~~~ 258 (296)
T PLN03075 179 MFFHTADVMDVTESLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRSAHGARAFLYPVVDPCDLRGFEVLSV 258 (296)
T ss_pred cEEEECchhhcccccCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEecccchHhhcCCCCChhhCCCeEEEEE
Confidence 999999998764 7899999984322 3489999999999999999999873 2223333333222 227777666
Q ss_pred EeCCCCCCCCCceEEEEEEEe
Q 004354 190 AIPQKSSSEPSLQTFMVVADK 210 (759)
Q Consensus 190 ~~~~~~~~~~~~~~f~~v~~K 210 (759)
..+..+ .--=+++++|
T Consensus 259 ~~P~~~-----v~Nsvi~~r~ 274 (296)
T PLN03075 259 FHPTDE-----VINSVIIARK 274 (296)
T ss_pred ECCCCC-----ceeeEEEEEe
Confidence 655421 2333455566
No 92
>PRK14968 putative methyltransferase; Provisional
Probab=99.06 E-value=5.1e-09 Score=104.53 Aligned_cols=100 Identities=17% Similarity=0.216 Sum_probs=79.2
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCC-C--cEEEEeecccCC--CcccEEEeCCCC
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRS-D--MRWRVMDMTSMQ--GGLDALMEPELG 141 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~-~--i~f~~~D~~~~~--gtfD~Ii~~~~~ 141 (759)
.++.+|||+|||+|.++..++..+ .+++++|+|+.+++.++++...... + +.+++.|+.+.. ..||+|+++...
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p~ 100 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNG-KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPPY 100 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhc-ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCCc
Confidence 456799999999999999999885 4699999999999999887644332 2 889999986654 579999986421
Q ss_pred -----------------------hhHHHHHHHHHHHhcccCcEEEEEEc
Q 004354 142 -----------------------HKLGNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 142 -----------------------~~~~~~~l~ei~rvLkpGG~liiit~ 167 (759)
......+++++.++|+|||.++++..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~ 149 (188)
T PRK14968 101 LPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQS 149 (188)
T ss_pred CCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence 11256789999999999999887754
No 93
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.06 E-value=1.6e-09 Score=111.44 Aligned_cols=108 Identities=17% Similarity=0.110 Sum_probs=83.9
Q ss_pred hhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCC--CeEEEEeCCHHHHHHHHHHhccC-CCCcEEEEeecccC
Q 004354 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF--HGITNVDFSKVVISDMLRRNVRD-RSDMRWRVMDMTSM 128 (759)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~--~~VtgIDiS~~~I~~a~~r~~~~-~~~i~f~~~D~~~~ 128 (759)
.....+.+++.. .++.+|||+|||+|.++..|++... .+|+++|+++.+++.+++++... ..+++++++|+.+.
T Consensus 64 ~~~~~~~~~l~~---~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~ 140 (215)
T TIGR00080 64 HMVAMMTELLEL---KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQG 140 (215)
T ss_pred HHHHHHHHHhCC---CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccC
Confidence 344455555544 6788999999999999999988732 24999999999999999887553 35799999998765
Q ss_pred C---CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEE
Q 004354 129 Q---GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 129 ~---gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit 166 (759)
. +.||+|++.... ..+...+.+.|+|||++++..
T Consensus 141 ~~~~~~fD~Ii~~~~~----~~~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 141 WEPLAPYDRIYVTAAG----PKIPEALIDQLKEGGILVMPV 177 (215)
T ss_pred CcccCCCCEEEEcCCc----ccccHHHHHhcCcCcEEEEEE
Confidence 3 689999987643 234566788999999988764
No 94
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.06 E-value=3.5e-09 Score=112.49 Aligned_cols=125 Identities=15% Similarity=0.246 Sum_probs=92.9
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCC--cEEEEeecccCC--CcccEEEeCCCCh
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSD--MRWRVMDMTSMQ--GGLDALMEPELGH 142 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~--i~f~~~D~~~~~--gtfD~Ii~~~~~~ 142 (759)
.++.+|||+|||+|.++...++.|...++|+|++|.+++.++.+...+.-. +.....+..... ++||+|+++= ..
T Consensus 161 ~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANI-LA 239 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANI-LA 239 (300)
T ss_pred cCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehh-hH
Confidence 368899999999999999999999999999999999999999987654433 223333333333 6999999975 34
Q ss_pred hHHHHHHHHHHHhcccCcEEEEEEcCchhhhhhhcccc-CCCceEEEEEeCC
Q 004354 143 KLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF-RFGWKMSVHAIPQ 193 (759)
Q Consensus 143 ~~~~~~l~ei~rvLkpGG~liiit~~~~~~~~~l~~~~-~~~w~v~~~~~~~ 193 (759)
.....+...+.+.|+|||++++...-..+ .....+.. ..+|.+..+...+
T Consensus 240 ~vl~~La~~~~~~lkpgg~lIlSGIl~~q-~~~V~~a~~~~gf~v~~~~~~~ 290 (300)
T COG2264 240 EVLVELAPDIKRLLKPGGRLILSGILEDQ-AESVAEAYEQAGFEVVEVLERE 290 (300)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEeehHhH-HHHHHHHHHhCCCeEeEEEecC
Confidence 45778999999999999999999865443 22333333 3477766655443
No 95
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.05 E-value=1e-09 Score=116.39 Aligned_cols=99 Identities=15% Similarity=0.166 Sum_probs=76.6
Q ss_pred CCCeEEEECCCcch----hHHHHHHhCC------CeEEEEeCCHHHHHHHHHHhcc------------------------
Q 004354 68 PPPQILVPGCGNSR----LSEHLYDAGF------HGITNVDFSKVVISDMLRRNVR------------------------ 113 (759)
Q Consensus 68 ~~~~ILDlGCG~G~----ls~~L~~~G~------~~VtgIDiS~~~I~~a~~r~~~------------------------ 113 (759)
++.+|||+|||+|. ++..+.+.+. .+|+|+|+|+.||+.|++....
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45799999999997 4444554321 2599999999999999875311
Q ss_pred ----CCCCcEEEEeecccCC---CcccEEEeCCCCh----hHHHHHHHHHHHhcccCcEEEEEE
Q 004354 114 ----DRSDMRWRVMDMTSMQ---GGLDALMEPELGH----KLGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 114 ----~~~~i~f~~~D~~~~~---gtfD~Ii~~~~~~----~~~~~~l~ei~rvLkpGG~liiit 166 (759)
-...++|.++|+.+.+ +.||+|+|.+..+ ....+++++++++|+|||++++..
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 0136899999998875 7899999976543 336789999999999999999764
No 96
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.05 E-value=6.7e-10 Score=112.47 Aligned_cols=103 Identities=17% Similarity=0.205 Sum_probs=82.9
Q ss_pred CCCeEEEECCCcchhHHHHHHhCC-CeEEEEeCCHHHHHHHHHHhccC-CCCcEEEEeecccCC------CcccEEEeCC
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRD-RSDMRWRVMDMTSMQ------GGLDALMEPE 139 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~-~~VtgIDiS~~~I~~a~~r~~~~-~~~i~f~~~D~~~~~------gtfD~Ii~~~ 139 (759)
...+|||||||+|.++..++.... .+|+|+|+|+.+++.|+++.... ..+++++++|+.++. +++|.|+++.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 456999999999999999998732 36999999999999998876443 358999999997642 6899999865
Q ss_pred CChhH----------HHHHHHHHHHhcccCcEEEEEEcCch
Q 004354 140 LGHKL----------GNQYLSEVKRLLKSGGKFVCLTLAES 170 (759)
Q Consensus 140 ~~~~~----------~~~~l~ei~rvLkpGG~liiit~~~~ 170 (759)
..+|. ...+++++.++|||||.+++.+-...
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~ 136 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEP 136 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHH
Confidence 33221 26799999999999999999986654
No 97
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.05 E-value=1.4e-09 Score=117.76 Aligned_cols=110 Identities=15% Similarity=0.228 Sum_probs=78.7
Q ss_pred hhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccC------CCCcEEEEeec
Q 004354 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD------RSDMRWRVMDM 125 (759)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~------~~~i~f~~~D~ 125 (759)
.....+..++......++.+|||+|||+|.++..|++.|. +|+|+|+|+.|++.++++.... ..++.|.++|+
T Consensus 128 ~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl 206 (315)
T PLN02585 128 QTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDL 206 (315)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcch
Confidence 3334455555421112567999999999999999999876 5999999999999999886432 24578999998
Q ss_pred ccCCCcccEEEeCCCChhH----HHHHHHHHHHhcccCcEEE
Q 004354 126 TSMQGGLDALMEPELGHKL----GNQYLSEVKRLLKSGGKFV 163 (759)
Q Consensus 126 ~~~~gtfD~Ii~~~~~~~~----~~~~l~ei~rvLkpGG~li 163 (759)
.++.+.||+|+|....++. ...+++.+.+ +.+||.++
T Consensus 207 ~~l~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~liI 247 (315)
T PLN02585 207 ESLSGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRLII 247 (315)
T ss_pred hhcCCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEEEE
Confidence 7766899999997653322 3456666665 34555533
No 98
>PTZ00146 fibrillarin; Provisional
Probab=99.05 E-value=1.6e-09 Score=114.93 Aligned_cols=120 Identities=18% Similarity=0.223 Sum_probs=94.9
Q ss_pred ccccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh-C-CCeEEEEeCCHHHHHHHHHHhccCCCCcEEEE
Q 004354 45 EWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDRSDMRWRV 122 (759)
Q Consensus 45 eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~-G-~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~ 122 (759)
.|..-...+...+..-+......++.+|||+|||+|.++.++++. | -..|+++|+|+.+++.+.+.+. ..+++.++.
T Consensus 109 ~w~p~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak-~r~NI~~I~ 187 (293)
T PTZ00146 109 VWNPFRSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAK-KRPNIVPII 187 (293)
T ss_pred eeCCcccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhh-hcCCCEEEE
Confidence 587776777777766555555578899999999999999999987 2 2369999999988776666543 337899999
Q ss_pred eecccCC------CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEE
Q 004354 123 MDMTSMQ------GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 165 (759)
Q Consensus 123 ~D~~~~~------gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liii 165 (759)
.|+.... +.+|+|++.....+....++.++.++|||||.|++.
T Consensus 188 ~Da~~p~~y~~~~~~vDvV~~Dva~pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 188 EDARYPQKYRMLVPMVDVIFADVAQPDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred CCccChhhhhcccCCCCEEEEeCCCcchHHHHHHHHHHhccCCCEEEEE
Confidence 9986531 789999998765566777888999999999999984
No 99
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.05 E-value=2.7e-09 Score=109.39 Aligned_cols=135 Identities=16% Similarity=0.111 Sum_probs=94.7
Q ss_pred CCCHHHHHHHHhhcCCCCccccccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHH
Q 004354 25 FTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVI 104 (759)
Q Consensus 25 f~~~~yWd~~y~~~~~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I 104 (759)
|-...||+..|......-...-+...+.+...+..++.. .++.+|||+|||+|.++..|+..+ .+++++|+++.++
T Consensus 38 f~p~~~~~~ay~d~~~~~~~~~~~~~p~~~~~l~~~l~~---~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~ 113 (212)
T PRK00312 38 FVPEAFKHKAYENRALPIGCGQTISQPYMVARMTELLEL---KPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQ 113 (212)
T ss_pred cCCchHHhcCccCCCccCCCCCeeCcHHHHHHHHHhcCC---CCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHH
Confidence 444556776676442110000111234455555566554 678899999999999999887774 4699999999999
Q ss_pred HHHHHHhccC-CCCcEEEEeecccCC---CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEEc
Q 004354 105 SDMLRRNVRD-RSDMRWRVMDMTSMQ---GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 105 ~~a~~r~~~~-~~~i~f~~~D~~~~~---gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit~ 167 (759)
+.+++++... ..++++.++|..+.. ++||+|++....+ .+.+.+.+.|+|||++++...
T Consensus 114 ~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~----~~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 114 WEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAAAP----EIPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred HHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEccCch----hhhHHHHHhcCCCcEEEEEEc
Confidence 9998887543 346899999986542 7899999976443 345667899999999988764
No 100
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.04 E-value=4.2e-09 Score=107.92 Aligned_cols=96 Identities=15% Similarity=0.124 Sum_probs=75.0
Q ss_pred CCCCeEEEECCCcchhHHHHHHhC-C-CeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC-----------Cccc
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAG-F-HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-----------GGLD 133 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G-~-~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~-----------gtfD 133 (759)
.++.+|||+|||+|.++..+++.. . ..|+|||+++ | ...++++++++|+++.. ++||
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-----~-----~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D 119 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-----M-----DPIVGVDFLQGDFRDELVLKALLERVGDSKVQ 119 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-----c-----cCCCCcEEEecCCCChHHHHHHHHHhCCCCCC
Confidence 467899999999999999998873 2 3699999998 1 12357999999998842 6899
Q ss_pred EEEeCCCChh-------------HHHHHHHHHHHhcccCcEEEEEEcCchhh
Q 004354 134 ALMEPELGHK-------------LGNQYLSEVKRLLKSGGKFVCLTLAESHV 172 (759)
Q Consensus 134 ~Ii~~~~~~~-------------~~~~~l~ei~rvLkpGG~liiit~~~~~~ 172 (759)
+|+++...++ ....+++++.++|+|||.|++..+....+
T Consensus 120 ~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~ 171 (209)
T PRK11188 120 VVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGF 171 (209)
T ss_pred EEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCH
Confidence 9999653211 13578999999999999999988765543
No 101
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.04 E-value=4.7e-09 Score=110.56 Aligned_cols=97 Identities=20% Similarity=0.250 Sum_probs=75.8
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCC--CcEEEEeecccCCCcccEEEeCCCChhH
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRS--DMRWRVMDMTSMQGGLDALMEPELGHKL 144 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~--~i~f~~~D~~~~~gtfD~Ii~~~~~~~~ 144 (759)
.++.+|||+|||+|.++..++..|...|+|+|+|+.+++.++++.....- .+.+...| .+||+|+++.. ...
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~-----~~fD~Vvani~-~~~ 191 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGD-----LKADVIVANIL-ANP 191 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCC-----CCcCEEEEcCc-HHH
Confidence 46789999999999999988888877799999999999999888754332 12222221 26999999753 334
Q ss_pred HHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 145 GNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 145 ~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
...++.++.++|+|||++++..+..
T Consensus 192 ~~~l~~~~~~~LkpgG~lilsgi~~ 216 (250)
T PRK00517 192 LLELAPDLARLLKPGGRLILSGILE 216 (250)
T ss_pred HHHHHHHHHHhcCCCcEEEEEECcH
Confidence 6788999999999999999987654
No 102
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.04 E-value=2.3e-09 Score=110.15 Aligned_cols=110 Identities=14% Similarity=0.089 Sum_probs=84.7
Q ss_pred hhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh-CC-CeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeecc
Q 004354 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GF-HGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMT 126 (759)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~-G~-~~VtgIDiS~~~I~~a~~r~~~~~-~~i~f~~~D~~ 126 (759)
.+.+...+...+.. .++.+|||+|||+|.++..+++. +. .+|+++|+++.+++.+++++...+ .+++++++|+.
T Consensus 61 ~p~~~~~~~~~l~~---~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~ 137 (212)
T PRK13942 61 AIHMVAIMCELLDL---KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGT 137 (212)
T ss_pred cHHHHHHHHHHcCC---CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcc
Confidence 34455555555554 67899999999999999988876 32 369999999999999998875433 47999999987
Q ss_pred cCC---CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEE
Q 004354 127 SMQ---GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 127 ~~~---gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit 166 (759)
... +.||+|++....+ .+...+.+.|+|||++++..
T Consensus 138 ~~~~~~~~fD~I~~~~~~~----~~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 138 LGYEENAPYDRIYVTAAGP----DIPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred cCCCcCCCcCEEEECCCcc----cchHHHHHhhCCCcEEEEEE
Confidence 643 7899999976543 23456777999999988753
No 103
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.03 E-value=6.4e-10 Score=110.78 Aligned_cols=97 Identities=21% Similarity=0.271 Sum_probs=86.0
Q ss_pred CCCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC--CcccEEEeCCCChh
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--GGLDALMEPELGHK 143 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~--gtfD~Ii~~~~~~~ 143 (759)
....+|.|+|||+|..++.|+++ .-..|+|+|.|+.||+.|+++. ++++|..+|+.++. ...|+++++...+|
T Consensus 29 ~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl----p~~~f~~aDl~~w~p~~~~dllfaNAvlqW 104 (257)
T COG4106 29 ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL----PDATFEEADLRTWKPEQPTDLLFANAVLQW 104 (257)
T ss_pred cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC----CCCceecccHhhcCCCCccchhhhhhhhhh
Confidence 56789999999999999999988 3346999999999999997775 89999999999998 68999999998887
Q ss_pred H--HHHHHHHHHHhcccCcEEEEEEc
Q 004354 144 L--GNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 144 ~--~~~~l~ei~rvLkpGG~liiit~ 167 (759)
. -..+|..+...|.|||.+.+-.-
T Consensus 105 lpdH~~ll~rL~~~L~Pgg~LAVQmP 130 (257)
T COG4106 105 LPDHPELLPRLVSQLAPGGVLAVQMP 130 (257)
T ss_pred ccccHHHHHHHHHhhCCCceEEEECC
Confidence 6 67889999999999999987753
No 104
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.03 E-value=7.9e-09 Score=109.25 Aligned_cols=125 Identities=17% Similarity=0.164 Sum_probs=96.3
Q ss_pred hHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCC-CeEEEEeCCHHHHHHHHHHhccCCCCc-EEEEeecccCC-
Q 004354 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDRSDM-RWRVMDMTSMQ- 129 (759)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~-~~VtgIDiS~~~I~~a~~r~~~~~~~i-~f~~~D~~~~~- 129 (759)
=.+++.+.+.. ....+|||+|||.|.++..|++... ..++-+|+|..+++.+++++..+.... .+...|+.+..
T Consensus 146 GS~lLl~~l~~---~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~ 222 (300)
T COG2813 146 GSRLLLETLPP---DLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVE 222 (300)
T ss_pred HHHHHHHhCCc---cCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccccc
Confidence 34566666654 4566999999999999999998853 479999999999999999886655544 56677765544
Q ss_pred CcccEEEeCCCChh-------HHHHHHHHHHHhcccCcEEEEEEcCchhhhhhhcccc
Q 004354 130 GGLDALMEPELGHK-------LGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF 180 (759)
Q Consensus 130 gtfD~Ii~~~~~~~-------~~~~~l~ei~rvLkpGG~liiit~~~~~~~~~l~~~~ 180 (759)
+.||+|+|++..|. ...++++...+.|++||.+.++..+.......+-+.|
T Consensus 223 ~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L~~~F 280 (300)
T COG2813 223 GKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANRHLPYEKKLKELF 280 (300)
T ss_pred ccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHHHHHhc
Confidence 89999999874442 3679999999999999999999876554444444433
No 105
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.03 E-value=1.7e-09 Score=113.19 Aligned_cols=110 Identities=14% Similarity=0.180 Sum_probs=90.8
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCcccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDE 603 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~ 603 (759)
..+++||.||.+.|..+.++...+| ..+|+++|+||...++|+++| |+ .+++++++|||.++|.+....
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~--~~~I~~~~G~a~e~L~~l~~~----- 150 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGV--AHKIDFREGPALPVLDQMIED----- 150 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCC--CCceEEEeccHHHHHHHHHhc-----
Confidence 4678999999999988888877664 569999999999999999999 66 579999999999999886410
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEE-Eec
Q 004354 604 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV-NLV 678 (759)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~-N~~ 678 (759)
......||+||+|++...+ ..+|+.+.++|++||++++ |+.
T Consensus 151 ---------------------~~~~~~fD~iFiDadK~~Y-------------~~y~~~~l~ll~~GGviv~DNvl 192 (247)
T PLN02589 151 ---------------------GKYHGTFDFIFVDADKDNY-------------INYHKRLIDLVKVGGVIGYDNTL 192 (247)
T ss_pred ---------------------cccCCcccEEEecCCHHHh-------------HHHHHHHHHhcCCCeEEEEcCCC
Confidence 0012579999999986532 6799999999999999887 553
No 106
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.02 E-value=4e-09 Score=112.92 Aligned_cols=123 Identities=15% Similarity=0.253 Sum_probs=87.7
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC-CcccEEEeCCCChhHH
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-GGLDALMEPELGHKLG 145 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~-gtfD~Ii~~~~~~~~~ 145 (759)
.++.+|||+|||+|.++...++.|.++|+|+|++|.+++.+++++..++-.-.+......+.. +.||+|+++= .....
T Consensus 160 ~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~~~~~~~~~dlvvANI-~~~vL 238 (295)
T PF06325_consen 160 KPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLSEDLVEGKFDLVVANI-LADVL 238 (295)
T ss_dssp STTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCTSCTCCS-EEEEEEES--HHHH
T ss_pred cCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEecccccccCCEEEECC-CHHHH
Confidence 357899999999999999999999999999999999999999987655543344433333333 8999999864 33446
Q ss_pred HHHHHHHHHhcccCcEEEEEEcCchhhhhhhccccCCCceEEEEEe
Q 004354 146 NQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAI 191 (759)
Q Consensus 146 ~~~l~ei~rvLkpGG~liiit~~~~~~~~~l~~~~~~~w~v~~~~~ 191 (759)
..++..+.++|+|||++++..+-.... ..+...+..+|.+.....
T Consensus 239 ~~l~~~~~~~l~~~G~lIlSGIl~~~~-~~v~~a~~~g~~~~~~~~ 283 (295)
T PF06325_consen 239 LELAPDIASLLKPGGYLILSGILEEQE-DEVIEAYKQGFELVEERE 283 (295)
T ss_dssp HHHHHHCHHHEEEEEEEEEEEEEGGGH-HHHHHHHHTTEEEEEEEE
T ss_pred HHHHHHHHHhhCCCCEEEEccccHHHH-HHHHHHHHCCCEEEEEEE
Confidence 788999999999999999987754322 222233323676654443
No 107
>PLN03075 nicotianamine synthase; Provisional
Probab=99.02 E-value=2.1e-09 Score=114.43 Aligned_cols=150 Identities=13% Similarity=0.179 Sum_probs=105.5
Q ss_pred CCCCeEEEEccccc--HHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcC--CCCCCCeEEEEccHHHHHHhhcccCcccc
Q 004354 528 GKSVKAVVIGLGAG--LLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG--FTQDKSLKVHITDGIKFVREMKSSSATDE 603 (759)
Q Consensus 528 ~~~~~vLviGlG~G--~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg--l~~~~rl~v~i~Da~~~l~~~~~~~~~~~ 603 (759)
..+.+|+.||.|.| +...++..++|..+++.+|+||++++.||+++. ..-.++++++.+|+.+....
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~--------- 192 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTES--------- 192 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccc---------
Confidence 36789999999966 344455567899999999999999999999983 22367999999999885211
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChh
Q 004354 604 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQA 683 (759)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~ 683 (759)
..+||+|++++-- +|.-+. -.++|+.+.+.|+|||+|++=.......
T Consensus 193 ------------------------l~~FDlVF~~ALi-----~~dk~~----k~~vL~~l~~~LkPGG~Lvlr~~~G~r~ 239 (296)
T PLN03075 193 ------------------------LKEYDVVFLAALV-----GMDKEE----KVKVIEHLGKHMAPGALLMLRSAHGARA 239 (296)
T ss_pred ------------------------cCCcCEEEEeccc-----cccccc----HHHHHHHHHHhcCCCcEEEEecccchHh
Confidence 2569999998521 110001 1789999999999999999876322222
Q ss_pred H-HHHHHHHHHHhcCceEEEeecCC-ccEEEEEecCCC
Q 004354 684 T-KDMVISRMKMVFNHLFCLQLEED-VNLVLFGLSSES 719 (759)
Q Consensus 684 ~-~~~v~~~l~~vF~~v~~~~~~~~-~N~Vl~a~~~~~ 719 (759)
+ +..+-...-+-|..+..++..++ +|.|+|+.+...
T Consensus 240 ~LYp~v~~~~~~gf~~~~~~~P~~~v~Nsvi~~r~~~~ 277 (296)
T PLN03075 240 FLYPVVDPCDLRGFEVLSVFHPTDEVINSVIIARKPGG 277 (296)
T ss_pred hcCCCCChhhCCCeEEEEEECCCCCceeeEEEEEeecC
Confidence 2 22222222337777666665554 699999988653
No 108
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.02 E-value=1.9e-09 Score=112.35 Aligned_cols=108 Identities=16% Similarity=0.288 Sum_probs=88.1
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCcccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDE 603 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~ 603 (759)
..+++||.||.|+|..+.++....+ ..+|+++|+||..+++|+++| |+ +++++++.+|+.+++.+...
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl--~~~i~~~~gda~~~L~~l~~------ 138 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGV--DHKINFIQSDALSALDQLLN------ 138 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEEccHHHHHHHHHh------
Confidence 4678999999999988777777654 569999999999999999998 65 47899999999999987641
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEE-Ee
Q 004354 604 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV-NL 677 (759)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~-N~ 677 (759)
.....+||+|++|++.... .++++.+.++|+|||++++ |+
T Consensus 139 ---------------------~~~~~~fD~VfiDa~k~~y-------------~~~~~~~~~ll~~GG~ii~dn~ 179 (234)
T PLN02781 139 ---------------------NDPKPEFDFAFVDADKPNY-------------VHFHEQLLKLVKVGGIIAFDNT 179 (234)
T ss_pred ---------------------CCCCCCCCEEEECCCHHHH-------------HHHHHHHHHhcCCCeEEEEEcC
Confidence 0013579999999875422 5789999999999998886 54
No 109
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.02 E-value=4.1e-09 Score=115.45 Aligned_cols=115 Identities=19% Similarity=0.198 Sum_probs=89.1
Q ss_pred hHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccC-CCCcEEEEeecccCC--
Q 004354 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD-RSDMRWRVMDMTSMQ-- 129 (759)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~-~~~i~f~~~D~~~~~-- 129 (759)
+...+...... .++.+|||+|||+|.++..++..|. .++|+|+++.|++.+++++... ..++.+.++|+.+++
T Consensus 170 la~~~~~l~~~---~~g~~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~ 245 (329)
T TIGR01177 170 LARAMVNLARV---TEGDRVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLS 245 (329)
T ss_pred HHHHHHHHhCC---CCcCEEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcc
Confidence 44444444433 5678999999999999988877766 4999999999999988876543 235789999999887
Q ss_pred -CcccEEEeCCC--------Ch---hHHHHHHHHHHHhcccCcEEEEEEcCchh
Q 004354 130 -GGLDALMEPEL--------GH---KLGNQYLSEVKRLLKSGGKFVCLTLAESH 171 (759)
Q Consensus 130 -gtfD~Ii~~~~--------~~---~~~~~~l~ei~rvLkpGG~liiit~~~~~ 171 (759)
+.||+|+++.. .+ .....+++++.++|+|||+++++......
T Consensus 246 ~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~~ 299 (329)
T TIGR01177 246 SESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRID 299 (329)
T ss_pred cCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCCC
Confidence 78999999641 11 22688999999999999999988765443
No 110
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.02 E-value=3.2e-09 Score=114.21 Aligned_cols=102 Identities=16% Similarity=0.304 Sum_probs=81.3
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccCC-CcccEEEeCCCChh
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ-GGLDALMEPELGHK 143 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~~-gtfD~Ii~~~~~~~ 143 (759)
.++.+|||+|||+|.++..++..|..+|+|+|+|+.+++.++++..... ..+.+...|..... +.||+|+++.. ..
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~-~~ 236 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANIL-AE 236 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecC-HH
Confidence 3568999999999999999988888789999999999999988775433 23555655543333 78999999754 33
Q ss_pred HHHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 144 LGNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 144 ~~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
....++.++.++|+|||++++..+..
T Consensus 237 ~l~~ll~~~~~~LkpgG~li~sgi~~ 262 (288)
T TIGR00406 237 VIKELYPQFSRLVKPGGWLILSGILE 262 (288)
T ss_pred HHHHHHHHHHHHcCCCcEEEEEeCcH
Confidence 46689999999999999999987654
No 111
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.02 E-value=1.2e-08 Score=105.81 Aligned_cols=157 Identities=17% Similarity=0.212 Sum_probs=116.1
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC-CCCCeEEEEccHHHHHHhhcccCccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSV 606 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~-~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~ 606 (759)
....+||.||.|.|+++.+|.+..+..+|++||+++++.+.|++...+. ..+|++|+++|--+|.+...
T Consensus 43 ~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~---------- 112 (248)
T COG4123 43 PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALV---------- 112 (248)
T ss_pred ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhccc----------
Confidence 4578999999999999999999988899999999999999999998653 46899999999999876654
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCC-cCCCC---------CChHHHHHHHHHccCcCcEEEEE
Q 004354 607 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMT-CPAAD---------FVEGSFLLTVKDALSEQGLFIVN 676 (759)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~s-cPp~~---------f~~~~fl~~~~~~L~~~Gilv~N 676 (759)
..+||+||+.. +-...+-. |+.+. ..-+++++.++.+|+|+|.|.+=
T Consensus 113 ---------------------~~~fD~Ii~NP--Pyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V 169 (248)
T COG4123 113 ---------------------FASFDLIICNP--PYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFV 169 (248)
T ss_pred ---------------------ccccCEEEeCC--CCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEE
Confidence 24799999833 21111222 44433 33578999999999999998854
Q ss_pred ecCCChhHHHHHHHHHHH-hcCc---eEEEe-ecCCccEEEEEecCCCC
Q 004354 677 LVSRSQATKDMVISRMKM-VFNH---LFCLQ-LEEDVNLVLFGLSSESC 720 (759)
Q Consensus 677 ~~~~~~~~~~~v~~~l~~-vF~~---v~~~~-~~~~~N~Vl~a~~~~~~ 720 (759)
.|...+ ..++..|++ -|.- ++.++ .....|.||+.......
T Consensus 170 --~r~erl-~ei~~~l~~~~~~~k~i~~V~p~~~k~A~~vLv~~~k~~~ 215 (248)
T COG4123 170 --HRPERL-AEIIELLKSYNLEPKRIQFVYPKIGKAANRVLVEAIKGGK 215 (248)
T ss_pred --ecHHHH-HHHHHHHHhcCCCceEEEEecCCCCCcceEEEEEEecCCC
Confidence 455444 357888877 3442 23332 24567899988766543
No 112
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.00 E-value=7.4e-09 Score=107.34 Aligned_cols=152 Identities=14% Similarity=0.117 Sum_probs=106.5
Q ss_pred HHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhcc--CCCCcEEEEeecccCC---
Q 004354 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVR--DRSDMRWRVMDMTSMQ--- 129 (759)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~--~~~~i~f~~~D~~~~~--- 129 (759)
++..+... ....+|||+|||+|.++..++++ ....|++||+.+.+.+.|++.... ...+++++++|+.++.
T Consensus 35 LL~~~~~~---~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~ 111 (248)
T COG4123 35 LLAAFAPV---PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKAL 111 (248)
T ss_pred HHHhhccc---ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcc
Confidence 34455543 45789999999999999999987 435799999999999999887643 3468999999999887
Q ss_pred --CcccEEEeCCC------C----------hh----HHHHHHHHHHHhcccCcEEEEEEcCchhhhhhhccccCC-CceE
Q 004354 130 --GGLDALMEPEL------G----------HK----LGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRF-GWKM 186 (759)
Q Consensus 130 --gtfD~Ii~~~~------~----------~~----~~~~~l~ei~rvLkpGG~liiit~~~~~~~~~l~~~~~~-~w~v 186 (759)
.+||+|+|++. . ++ ..+.+++...++|||||++.++.- +..+..++..... +|..
T Consensus 112 ~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r--~erl~ei~~~l~~~~~~~ 189 (248)
T COG4123 112 VFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHR--PERLAEIIELLKSYNLEP 189 (248)
T ss_pred cccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEec--HHHHHHHHHHHHhcCCCc
Confidence 67999999751 0 11 178999999999999999998873 4444444444422 5554
Q ss_pred EEEEeCCCCCCCCCceEEEEEEEeCCC
Q 004354 187 SVHAIPQKSSSEPSLQTFMVVADKENS 213 (759)
Q Consensus 187 ~~~~~~~~~~~~~~~~~f~~v~~K~~~ 213 (759)
.-...-.... ......-++.+.|...
T Consensus 190 k~i~~V~p~~-~k~A~~vLv~~~k~~~ 215 (248)
T COG4123 190 KRIQFVYPKI-GKAANRVLVEAIKGGK 215 (248)
T ss_pred eEEEEecCCC-CCcceEEEEEEecCCC
Confidence 4333322211 2234445555566555
No 113
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=99.00 E-value=1.1e-09 Score=114.68 Aligned_cols=127 Identities=17% Similarity=0.147 Sum_probs=101.3
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccC--C-----CCcEEEEeecccCC---------C
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD--R-----SDMRWRVMDMTSMQ---------G 130 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~--~-----~~i~f~~~D~~~~~---------g 130 (759)
++...+|++|||-|..+...-+.|...++|+||+++.|++|++|+... . -.+.|+++|.+.-. .
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp 195 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDP 195 (389)
T ss_pred ccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCC
Confidence 367889999999999999998889989999999999999999987432 1 13688999876543 3
Q ss_pred cccEEEeCCCCh------hHHHHHHHHHHHhcccCcEEEEEEcCchhhhhhhccccCCCceEEEEEeCC
Q 004354 131 GLDALMEPELGH------KLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAIPQ 193 (759)
Q Consensus 131 tfD~Ii~~~~~~------~~~~~~l~ei~rvLkpGG~liiit~~~~~~~~~l~~~~~~~w~v~~~~~~~ 193 (759)
.||+|-|....| ..+..+++++.+.|+|||+||........++..+-......|...++.+..
T Consensus 196 ~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~~e~~~~gNdiykv~y 264 (389)
T KOG1975|consen 196 RFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSDVIIKRLRAGEVERFGNDIYKVTY 264 (389)
T ss_pred CcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHHHHHHHHHhccchhhcceeeeEee
Confidence 499999965333 348899999999999999999988777777777666544478888866654
No 114
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.99 E-value=1.6e-08 Score=111.51 Aligned_cols=106 Identities=14% Similarity=0.094 Sum_probs=86.9
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCC-CeEEEEeCCHHHHHHHHHHhccC-CCCcEEEEeecccC----C-CcccEEEeCC
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRD-RSDMRWRVMDMTSM----Q-GGLDALMEPE 139 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~-~~VtgIDiS~~~I~~a~~r~~~~-~~~i~f~~~D~~~~----~-gtfD~Ii~~~ 139 (759)
..+..+||||||+|.++..++.... .+++|+|+++.+++.+.+++... ..++.++++|+..+ + +++|.|+++.
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnF 200 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHF 200 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeC
Confidence 3566899999999999999998743 46999999999999998887543 46899999998654 2 8999999976
Q ss_pred CChhH--------HHHHHHHHHHhcccCcEEEEEEcCchhh
Q 004354 140 LGHKL--------GNQYLSEVKRLLKSGGKFVCLTLAESHV 172 (759)
Q Consensus 140 ~~~~~--------~~~~l~ei~rvLkpGG~liiit~~~~~~ 172 (759)
..+|. ...+++++.|+|+|||.+.+.|-..+.+
T Consensus 201 PdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~ 241 (390)
T PRK14121 201 PVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYF 241 (390)
T ss_pred CCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHH
Confidence 44442 3689999999999999999998766544
No 115
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.99 E-value=1.2e-09 Score=118.94 Aligned_cols=111 Identities=22% Similarity=0.228 Sum_probs=84.4
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcc-------CC----CCcEEEEeecccCC-------
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVR-------DR----SDMRWRVMDMTSMQ------- 129 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~-------~~----~~i~f~~~D~~~~~------- 129 (759)
++.+|||+|||.|.........+...++|+|+|+..|+.|++|+.. .. -...|+.+|.....
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 6789999999999999888888899999999999999999999821 11 23567888876542
Q ss_pred --CcccEEEeCCCChh------HHHHHHHHHHHhcccCcEEEEEEcCchhhhhhhcc
Q 004354 130 --GGLDALMEPELGHK------LGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFP 178 (759)
Q Consensus 130 --gtfD~Ii~~~~~~~------~~~~~l~ei~rvLkpGG~liiit~~~~~~~~~l~~ 178 (759)
..||+|-|....|. .+..+|+++.+.|+|||+||.++.....+...+..
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~i~~~l~~ 198 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSDEIVKRLRE 198 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHCCHHC
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHHHHHHHHHh
Confidence 48999999765443 38899999999999999999999887766555544
No 116
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.98 E-value=5.5e-09 Score=96.18 Aligned_cols=113 Identities=16% Similarity=0.210 Sum_probs=85.4
Q ss_pred CeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC-CCCCeEEEEccHHHHHHhhcccCcccccccccc
Q 004354 531 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 609 (759)
Q Consensus 531 ~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~-~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~ 609 (759)
.+||.+|.|.|.++..+.... ..++++||+||..+++|+..+... .+++++++++|+.++.+...
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~------------- 67 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLP------------- 67 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCT-------------
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhcc-------------
Confidence 489999999999999999887 679999999999999999998432 25789999999999874443
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 004354 610 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 677 (759)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~ 677 (759)
..+||+|+.|..-.... .. -....-....|++.+.++|+|||++++-+
T Consensus 68 ------------------~~~~D~Iv~npP~~~~~-~~-~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 68 ------------------DGKFDLIVTNPPYGPRS-GD-KAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp ------------------TT-EEEEEE--STTSBT-T-----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ------------------CceeEEEEECCCCcccc-cc-chhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 47899999976433210 00 01111245789999999999999998765
No 117
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.98 E-value=6.4e-09 Score=111.56 Aligned_cols=117 Identities=18% Similarity=0.142 Sum_probs=85.7
Q ss_pred CCCeEEEECCCcchhHHHHHHhCC-CeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccC-C-CcccEEEeCCCC-
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM-Q-GGLDALMEPELG- 141 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~-~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~-~-gtfD~Ii~~~~~- 141 (759)
+..+|||+|||+|.++..++.... .+|+++|+|+.+++.|+++....+ .+++|+++|+.+. + +.||+|+++...
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy~ 200 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPYV 200 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCCC
Confidence 457899999999999999998632 369999999999999998875443 3689999998653 3 589999996310
Q ss_pred --------------------------hhHHHHHHHHHHHhcccCcEEEEEEcCchhhhhhhccccCCCc
Q 004354 142 --------------------------HKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGW 184 (759)
Q Consensus 142 --------------------------~~~~~~~l~ei~rvLkpGG~liiit~~~~~~~~~l~~~~~~~w 184 (759)
......+++++.++|+|||++++..-.+......++....+.|
T Consensus 201 ~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~~~v~~~~~~~~~~~ 269 (284)
T TIGR03533 201 DAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSMEALEEAYPDVPFTW 269 (284)
T ss_pred CccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCHHHHHHHHHhCCCce
Confidence 0114678999999999999998766433233333444333344
No 118
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.98 E-value=4e-09 Score=109.61 Aligned_cols=101 Identities=22% Similarity=0.314 Sum_probs=83.4
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC----CcccEEEeCCCCh
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ----GGLDALMEPELGH 142 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~----gtfD~Ii~~~~~~ 142 (759)
.++.+|||+|||+|.++..+.+.+. +++++|+++.+++.++++.......+++...|+.+.. ++||+|++....+
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~ 125 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLE 125 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhh
Confidence 4678999999999999999988876 4999999999999998876544446788888887664 7899999976433
Q ss_pred hH--HHHHHHHHHHhcccCcEEEEEEcC
Q 004354 143 KL--GNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 143 ~~--~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
+. ...+++.+.++|+|||.+++....
T Consensus 126 ~~~~~~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 126 HVPDPASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred ccCCHHHHHHHHHHHcCCCcEEEEEecC
Confidence 32 678899999999999999887654
No 119
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.95 E-value=2.7e-08 Score=98.33 Aligned_cols=129 Identities=16% Similarity=0.135 Sum_probs=97.4
Q ss_pred hhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCC-CeEEEEeCCHHHHHHHHHHhcc-CCCCcEEEEeecccC
Q 004354 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVR-DRSDMRWRVMDMTSM 128 (759)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~-~~VtgIDiS~~~I~~a~~r~~~-~~~~i~f~~~D~~~~ 128 (759)
++++......+.. .+++.++|||||+|.++..++..+. .+|++||-++.+++..+++..+ ..+++..+.+|+-+.
T Consensus 20 ~EIRal~ls~L~~---~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~ 96 (187)
T COG2242 20 EEIRALTLSKLRP---RPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEA 96 (187)
T ss_pred HHHHHHHHHhhCC---CCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHh
Confidence 3455555555543 7899999999999999999986554 3699999999999988777644 357899999998665
Q ss_pred C---CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEEcCchhhhhhhccccCCCc
Q 004354 129 Q---GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGW 184 (759)
Q Consensus 129 ~---gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit~~~~~~~~~l~~~~~~~w 184 (759)
- .++|+|+.... ...+.+++.+...|+|||+++......+.....+-.....+|
T Consensus 97 L~~~~~~daiFIGGg--~~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~ 153 (187)
T COG2242 97 LPDLPSPDAIFIGGG--GNIEEILEAAWERLKPGGRLVANAITLETLAKALEALEQLGG 153 (187)
T ss_pred hcCCCCCCEEEECCC--CCHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCC
Confidence 3 47999999765 347899999999999999999877655544333332234466
No 120
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.95 E-value=5.1e-09 Score=111.40 Aligned_cols=100 Identities=18% Similarity=0.183 Sum_probs=80.0
Q ss_pred CCCCeEEEECCCcchhHHHHHHhC-CCeEEEEeCCHHHHHHHHHHhc-cCCCCcEEEEeecccCC--CcccEEEeCCCC-
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNV-RDRSDMRWRVMDMTSMQ--GGLDALMEPELG- 141 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G-~~~VtgIDiS~~~I~~a~~r~~-~~~~~i~f~~~D~~~~~--gtfD~Ii~~~~~- 141 (759)
.++.+|||+|||+|.++..++... ..+|+++|+|+.+++.++++.. ....++.++++|+.+.. ++||+|+++...
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npPy~ 186 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVSNPPYI 186 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEECCCcC
Confidence 466799999999999999998874 2469999999999999988875 33457999999986643 689999985310
Q ss_pred ---------------------------hhHHHHHHHHHHHhcccCcEEEEEE
Q 004354 142 ---------------------------HKLGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 142 ---------------------------~~~~~~~l~ei~rvLkpGG~liiit 166 (759)
......+++++.++|+|||++++..
T Consensus 187 ~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 187 PEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred CcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 0114678889999999999988864
No 121
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.94 E-value=5.2e-09 Score=109.58 Aligned_cols=111 Identities=19% Similarity=0.238 Sum_probs=82.7
Q ss_pred CCCeEEEECCCcchhHHHHHHhC-CCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeecccCC--CcccEEEeCCCCh-
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ--GGLDALMEPELGH- 142 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G-~~~VtgIDiS~~~I~~a~~r~~~~~-~~i~f~~~D~~~~~--gtfD~Ii~~~~~~- 142 (759)
.+.+|||+|||+|.++..++... ..+++|+|+|+.+++.++++..... .+++++++|+.+.. ++||+|+++....
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~~ 166 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFDLIVSNPPYIP 166 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCceeEEEECCCCCc
Confidence 45689999999999999998862 2369999999999999988765433 35899999987643 7899999954110
Q ss_pred ---------------------------hHHHHHHHHHHHhcccCcEEEEEE-cCchhhhhhhcc
Q 004354 143 ---------------------------KLGNQYLSEVKRLLKSGGKFVCLT-LAESHVLGLLFP 178 (759)
Q Consensus 143 ---------------------------~~~~~~l~ei~rvLkpGG~liiit-~~~~~~~~~l~~ 178 (759)
.....+++++.++|+|||.+++.. +.+......++.
T Consensus 167 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~~~~l~ 230 (251)
T TIGR03534 167 EADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAVRALFE 230 (251)
T ss_pred hhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHHHHHHHHHH
Confidence 002477899999999999988765 233343444444
No 122
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.94 E-value=6.5e-09 Score=115.33 Aligned_cols=112 Identities=8% Similarity=0.024 Sum_probs=85.0
Q ss_pred CCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC----CcccEEEeCCCCh
Q 004354 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ----GGLDALMEPELGH 142 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~----gtfD~Ii~~~~~~ 142 (759)
++.+|||+|||+|.++..++.. ...+|+++|+|+.+++.++++......+++++++|+.+.. ++||+|+|+....
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI 330 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYI 330 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCC
Confidence 4569999999999999998865 3346999999999999999987655567999999986542 6799999965110
Q ss_pred ---------------------------hHHHHHHHHHHHhcccCcEEEEEE-cCchhhhhhhccc
Q 004354 143 ---------------------------KLGNQYLSEVKRLLKSGGKFVCLT-LAESHVLGLLFPK 179 (759)
Q Consensus 143 ---------------------------~~~~~~l~ei~rvLkpGG~liiit-~~~~~~~~~l~~~ 179 (759)
.....+++.+.+.|+|||.+++.. +.|......++..
T Consensus 331 ~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q~e~V~~ll~~ 395 (423)
T PRK14966 331 ENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGAAVRGVLAE 395 (423)
T ss_pred CcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECccHHHHHHHHHHH
Confidence 014577888889999999977643 4455555555544
No 123
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.93 E-value=9.2e-09 Score=102.78 Aligned_cols=97 Identities=23% Similarity=0.277 Sum_probs=78.5
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccC-C---CcccEEEeCCCC--
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM-Q---GGLDALMEPELG-- 141 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~-~---gtfD~Ii~~~~~-- 141 (759)
...-|||||||+|..+..|.+.|+ ..+|+|||+.|++.|.++- -.-+++.+||-.. + |+||.+++....
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh-~wiGvDiSpsML~~a~~~e----~egdlil~DMG~GlpfrpGtFDg~ISISAvQW 124 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGH-QWIGVDISPSMLEQAVERE----LEGDLILCDMGEGLPFRPGTFDGVISISAVQW 124 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCc-eEEeecCCHHHHHHHHHhh----hhcCeeeeecCCCCCCCCCccceEEEeeeeee
Confidence 467899999999999999999995 5999999999999998643 1246888998643 3 999999974311
Q ss_pred -----------hhHHHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 142 -----------HKLGNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 142 -----------~~~~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
...+..+|..++.+|++|++.++-.|..
T Consensus 125 LcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpe 163 (270)
T KOG1541|consen 125 LCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPE 163 (270)
T ss_pred ecccCccccChHHHHHHHhhhhhhhhccCceeEEEeccc
Confidence 1126788999999999999999988754
No 124
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=98.92 E-value=1.7e-08 Score=101.57 Aligned_cols=147 Identities=12% Similarity=0.103 Sum_probs=101.3
Q ss_pred HHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEE
Q 004354 505 SYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVH 584 (759)
Q Consensus 505 ~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~ 584 (759)
-+++.|+..+.+..- + +...+||.||+|+|.++..+....|..+|++||+++.+++.|++...-..-++++++
T Consensus 28 ~~~~~~~d~l~l~~~-l------~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~ 100 (187)
T PRK00107 28 LWERHILDSLAIAPY-L------PGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVV 100 (187)
T ss_pred HHHHHHHHHHHHHhh-c------CCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEE
Confidence 466667666554432 1 236799999999999999888888888999999999999999987622111349999
Q ss_pred EccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHH
Q 004354 585 ITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVK 664 (759)
Q Consensus 585 i~Da~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~ 664 (759)
.+|+.++-. ..+||+|+.+... . -..+++.+.
T Consensus 101 ~~d~~~~~~----------------------------------~~~fDlV~~~~~~-----~---------~~~~l~~~~ 132 (187)
T PRK00107 101 HGRAEEFGQ----------------------------------EEKFDVVTSRAVA-----S---------LSDLVELCL 132 (187)
T ss_pred eccHhhCCC----------------------------------CCCccEEEEcccc-----C---------HHHHHHHHH
Confidence 999876411 2579999985421 0 167999999
Q ss_pred HccCcCcEEEEEecCCChhHHHHHHHHHHHhcCceEEEeecC
Q 004354 665 DALSEQGLFIVNLVSRSQATKDMVISRMKMVFNHLFCLQLEE 706 (759)
Q Consensus 665 ~~L~~~Gilv~N~~~~~~~~~~~v~~~l~~vF~~v~~~~~~~ 706 (759)
+.|+|||.|++=...........+...+.-.-..+|.+.++.
T Consensus 133 ~~LkpGG~lv~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 174 (187)
T PRK00107 133 PLLKPGGRFLALKGRDPEEEIAELPKALGGKVEEVIELTLPG 174 (187)
T ss_pred HhcCCCeEEEEEeCCChHHHHHHHHHhcCceEeeeEEEecCC
Confidence 999999999876544333322333333333334566666553
No 125
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=98.91 E-value=7.3e-09 Score=95.87 Aligned_cols=105 Identities=16% Similarity=0.108 Sum_probs=82.9
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 608 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~ 608 (759)
...+||.||.|.|.++..+...+|..++++||+++.+++.|++++.....++++++.+|+..++...
T Consensus 19 ~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 85 (124)
T TIGR02469 19 PGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDS------------- 85 (124)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhh-------------
Confidence 3469999999999999999998888899999999999999998763222346899999876543322
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEec
Q 004354 609 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 678 (759)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~ 678 (759)
..+||+|+++.. +.. ..++++.+.+.|+|||.|++++.
T Consensus 86 -------------------~~~~D~v~~~~~-----------~~~--~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 86 -------------------LPEPDRVFIGGS-----------GGL--LQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred -------------------cCCCCEEEECCc-----------chh--HHHHHHHHHHHcCCCCEEEEEec
Confidence 257999999431 111 25899999999999999999975
No 126
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.91 E-value=6.7e-09 Score=107.04 Aligned_cols=100 Identities=23% Similarity=0.338 Sum_probs=83.1
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCC-CcEEEEeecccCC----CcccEEEeCCCCh
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRS-DMRWRVMDMTSMQ----GGLDALMEPELGH 142 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~-~i~f~~~D~~~~~----gtfD~Ii~~~~~~ 142 (759)
.+.+|||+|||+|.++..+++.+.. ++++|+|+.+++.++++...... ++++.+.|+.+.+ ++||+|++....+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~~-v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~ 123 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGAN-VTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLE 123 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCe-EEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHH
Confidence 4679999999999999999887765 99999999999999887654444 5889999887654 6899999976444
Q ss_pred hH--HHHHHHHHHHhcccCcEEEEEEcC
Q 004354 143 KL--GNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 143 ~~--~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
+. ...+++++.++|+|||.+++.+..
T Consensus 124 ~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 151 (224)
T TIGR01983 124 HVPDPQAFIRACAQLLKPGGILFFSTIN 151 (224)
T ss_pred hCCCHHHHHHHHHHhcCCCcEEEEEecC
Confidence 33 788999999999999998887654
No 127
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.91 E-value=1.4e-08 Score=110.02 Aligned_cols=98 Identities=16% Similarity=0.047 Sum_probs=78.5
Q ss_pred CeEEEECCCcchhHHHHHHhC-CCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccC-C-CcccEEEeCCCC---
Q 004354 70 PQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM-Q-GGLDALMEPELG--- 141 (759)
Q Consensus 70 ~~ILDlGCG~G~ls~~L~~~G-~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~-~-gtfD~Ii~~~~~--- 141 (759)
.+|||+|||+|.++..++... ..+|+++|+|+.+++.+++++...+ .+++++++|+.+. + ++||+|++++..
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~~ 214 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVDA 214 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCCc
Confidence 689999999999999998763 2469999999999999998875443 3599999998653 3 589999997410
Q ss_pred ------------------------hhHHHHHHHHHHHhcccCcEEEEEEc
Q 004354 142 ------------------------HKLGNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 142 ------------------------~~~~~~~l~ei~rvLkpGG~liiit~ 167 (759)
......+++++.+.|+|||++++..-
T Consensus 215 ~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g 264 (307)
T PRK11805 215 EDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVG 264 (307)
T ss_pred cchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 01246789999999999999998654
No 128
>PRK06202 hypothetical protein; Provisional
Probab=98.90 E-value=1e-08 Score=106.63 Aligned_cols=100 Identities=19% Similarity=0.237 Sum_probs=76.7
Q ss_pred CCCCeEEEECCCcchhHHHHHHh----CC-CeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC---CcccEEEeC
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDA----GF-HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ---GGLDALMEP 138 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~----G~-~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~---gtfD~Ii~~ 138 (759)
.++.+|||+|||+|.++..|++. |. .+|+|+|+|+.|++.++++.. .+++++.+.|...++ ++||+|+++
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~--~~~~~~~~~~~~~l~~~~~~fD~V~~~ 136 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPR--RPGVTFRQAVSDELVAEGERFDVVTSN 136 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccc--cCCCeEEEEecccccccCCCccEEEEC
Confidence 45679999999999999888752 43 269999999999999877642 345777777765554 789999998
Q ss_pred CCChhH----HHHHHHHHHHhcccCcEEEEEEcCch
Q 004354 139 ELGHKL----GNQYLSEVKRLLKSGGKFVCLTLAES 170 (759)
Q Consensus 139 ~~~~~~----~~~~l~ei~rvLkpGG~liiit~~~~ 170 (759)
...++. ...+++++.|+++ |.+++..+..+
T Consensus 137 ~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~ 170 (232)
T PRK06202 137 HFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRS 170 (232)
T ss_pred CeeecCChHHHHHHHHHHHHhcC--eeEEEeccccC
Confidence 765543 4679999999998 56666666544
No 129
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.87 E-value=3.6e-08 Score=99.21 Aligned_cols=94 Identities=19% Similarity=0.184 Sum_probs=72.4
Q ss_pred CCCCeEEEECCCcchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccC----------C-Cccc
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAG--FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM----------Q-GGLD 133 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G--~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~----------~-gtfD 133 (759)
.++.+|||+|||+|.++..+++.. ..+|+++|+|+.+ ..++++++++|+.+. + +.||
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D 100 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----------PIENVDFIRGDFTDEEVLNKIRERVGDDKVD 100 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----------cCCCceEEEeeCCChhHHHHHHHHhCCCCcc
Confidence 578899999999999999888763 2369999999843 125688999998763 2 5799
Q ss_pred EEEeCCCC----hh---------HHHHHHHHHHHhcccCcEEEEEEcCch
Q 004354 134 ALMEPELG----HK---------LGNQYLSEVKRLLKSGGKFVCLTLAES 170 (759)
Q Consensus 134 ~Ii~~~~~----~~---------~~~~~l~ei~rvLkpGG~liiit~~~~ 170 (759)
+|+++... .+ ....++.++.++|+|||++++..+...
T Consensus 101 ~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~ 150 (188)
T TIGR00438 101 VVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGE 150 (188)
T ss_pred EEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCc
Confidence 99985321 11 147899999999999999999766543
No 130
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.86 E-value=2e-08 Score=107.77 Aligned_cols=109 Identities=16% Similarity=0.116 Sum_probs=83.4
Q ss_pred CeEEEECCCcchhHHHHHHhCC-CeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccCC--CcccEEEeCCC----
Q 004354 70 PQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ--GGLDALMEPEL---- 140 (759)
Q Consensus 70 ~~ILDlGCG~G~ls~~L~~~G~-~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~~--gtfD~Ii~~~~---- 140 (759)
.+|||+|||+|.++..++.... .+|+++|+|+.+++.++++..... .+++|+++|+.+.. ..||+|+++..
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi~~ 195 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYIDE 195 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCCCc
Confidence 6899999999999999988643 469999999999999998875433 24899999987643 48999999630
Q ss_pred -----C------------------hhHHHHHHHHHHHhcccCcEEEEEEc-Cchhhhhhhcc
Q 004354 141 -----G------------------HKLGNQYLSEVKRLLKSGGKFVCLTL-AESHVLGLLFP 178 (759)
Q Consensus 141 -----~------------------~~~~~~~l~ei~rvLkpGG~liiit~-~~~~~~~~l~~ 178 (759)
. ......++.++.+.|+|||.+++..- .+.+....++.
T Consensus 196 ~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~~~~~~~~~ 257 (284)
T TIGR00536 196 EDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQKSLKELLR 257 (284)
T ss_pred chhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHH
Confidence 0 01366789999999999999887553 44544555543
No 131
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.86 E-value=2e-08 Score=88.05 Aligned_cols=95 Identities=24% Similarity=0.305 Sum_probs=78.2
Q ss_pred eEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHh-ccCCCCcEEEEeecccCC----CcccEEEeCCCChh--
Q 004354 71 QILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRN-VRDRSDMRWRVMDMTSMQ----GGLDALMEPELGHK-- 143 (759)
Q Consensus 71 ~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~-~~~~~~i~f~~~D~~~~~----gtfD~Ii~~~~~~~-- 143 (759)
+|||+|||+|.++..++.....+++++|+++.+++.+++.. ......+++...|+.+.. +.+|+|++....+.
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~ 80 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHLV 80 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeehh
Confidence 48999999999999998754567999999999999887433 223457899999987764 78999999875543
Q ss_pred -HHHHHHHHHHHhcccCcEEEEE
Q 004354 144 -LGNQYLSEVKRLLKSGGKFVCL 165 (759)
Q Consensus 144 -~~~~~l~ei~rvLkpGG~liii 165 (759)
....+++.+.+.|+|||.+++.
T Consensus 81 ~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 81 EDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hHHHHHHHHHHHHcCCCCEEEEE
Confidence 4899999999999999999876
No 132
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=98.85 E-value=7e-09 Score=102.79 Aligned_cols=131 Identities=15% Similarity=0.227 Sum_probs=92.2
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 608 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~ 608 (759)
...+||.+|.|.|.++..+....|..+|++||+++..++.|++.+....-+.++++.+|..+.+.
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~--------------- 95 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALP--------------- 95 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCC---------------
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccccc---------------
Confidence 55789999999999999999999998999999999999999998833222239999999765422
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChhHHHHH
Q 004354 609 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMV 688 (759)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~~~~~v 688 (759)
..+||+|+....-. .|. ......-..|++.+++.|+|||.|++-. .+.... +
T Consensus 96 -------------------~~~fD~Iv~NPP~~---~~~--~~~~~~~~~~i~~a~~~Lk~~G~l~lv~-~~~~~~-~-- 147 (170)
T PF05175_consen 96 -------------------DGKFDLIVSNPPFH---AGG--DDGLDLLRDFIEQARRYLKPGGRLFLVI-NSHLGY-E-- 147 (170)
T ss_dssp -------------------TTCEEEEEE---SB---TTS--HCHHHHHHHHHHHHHHHEEEEEEEEEEE-ETTSCH-H--
T ss_pred -------------------ccceeEEEEccchh---ccc--ccchhhHHHHHHHHHHhccCCCEEEEEe-ecCCCh-H--
Confidence 36899999943210 000 0011134789999999999999887644 233332 2
Q ss_pred HHHHHHhcCceEEEe
Q 004354 689 ISRMKMVFNHLFCLQ 703 (759)
Q Consensus 689 ~~~l~~vF~~v~~~~ 703 (759)
..+++.|..+-.+.
T Consensus 148 -~~l~~~f~~~~~~~ 161 (170)
T PF05175_consen 148 -RLLKELFGDVEVVA 161 (170)
T ss_dssp -HHHHHHHS--EEEE
T ss_pred -HHHHHhcCCEEEEE
Confidence 22788999776655
No 133
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.85 E-value=2.8e-08 Score=104.68 Aligned_cols=118 Identities=14% Similarity=0.106 Sum_probs=84.0
Q ss_pred CCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC-----CcccEEEeCCCCh
Q 004354 69 PPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-----GGLDALMEPELGH 142 (759)
Q Consensus 69 ~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~-----gtfD~Ii~~~~~~ 142 (759)
..+|||+|||+|.++..++.. +..+|+++|+|+.+++.+++++...+ ++++++|+.+.. +.||+|+++....
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~--~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~ 164 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG--GTVHEGDLYDALPTALRGRVDILAANAPYV 164 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--CEEEEeechhhcchhcCCCEeEEEECCCCC
Confidence 458999999999999998875 22369999999999999988875433 589999987642 5799999975110
Q ss_pred ----------------------------hHHHHHHHHHHHhcccCcEEEEEEcCc-hhhhhhhccccCCCceEEEEE
Q 004354 143 ----------------------------KLGNQYLSEVKRLLKSGGKFVCLTLAE-SHVLGLLFPKFRFGWKMSVHA 190 (759)
Q Consensus 143 ----------------------------~~~~~~l~ei~rvLkpGG~liiit~~~-~~~~~~l~~~~~~~w~v~~~~ 190 (759)
.....++..+.++|+|||++++..... ..-...++.. .+|...+..
T Consensus 165 ~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~v~~~l~~--~g~~~~~~~ 239 (251)
T TIGR03704 165 PTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAPLAVEAFAR--AGLIARVAS 239 (251)
T ss_pred CchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHH--CCCCceeeE
Confidence 014578888899999999999876432 2222222322 356555544
No 134
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.85 E-value=3.7e-08 Score=118.11 Aligned_cols=141 Identities=15% Similarity=0.062 Sum_probs=100.3
Q ss_pred cccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC---CCcEEEE
Q 004354 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR---SDMRWRV 122 (759)
Q Consensus 46 W~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~---~~i~f~~ 122 (759)
+|.+....+..+..+. ++.+|||+|||+|.++..++..|..+|+++|+|+.+++.+++++...+ .++++++
T Consensus 522 ~flDqr~~R~~~~~~~------~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~ 595 (702)
T PRK11783 522 LFLDHRPTRRMIGQMA------KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQ 595 (702)
T ss_pred ECHHHHHHHHHHHHhc------CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEE
Confidence 4545445555555554 357999999999999999999888789999999999999999875443 3689999
Q ss_pred eecccCC----CcccEEEeCCCC-------------hhHHHHHHHHHHHhcccCcEEEEEEcCchhhhhhhccccCCCce
Q 004354 123 MDMTSMQ----GGLDALMEPELG-------------HKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWK 185 (759)
Q Consensus 123 ~D~~~~~----gtfD~Ii~~~~~-------------~~~~~~~l~ei~rvLkpGG~liiit~~~~~~~~~l~~~~~~~w~ 185 (759)
+|+.+.. ++||+|++++.. ......++..+.++|+|||.+++.+.... +....-.....++.
T Consensus 596 ~D~~~~l~~~~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~-~~~~~~~~~~~g~~ 674 (702)
T PRK11783 596 ADCLAWLKEAREQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRG-FKMDEEGLAKLGLK 674 (702)
T ss_pred ccHHHHHHHcCCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc-CChhHHHHHhCCCe
Confidence 9987642 689999996521 01256788899999999999887765432 22111111123677
Q ss_pred EEEEEeCC
Q 004354 186 MSVHAIPQ 193 (759)
Q Consensus 186 v~~~~~~~ 193 (759)
+++.....
T Consensus 675 ~~~i~~~~ 682 (702)
T PRK11783 675 AEEITAKT 682 (702)
T ss_pred EEEEecCC
Confidence 77655433
No 135
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.84 E-value=6.9e-08 Score=97.80 Aligned_cols=134 Identities=13% Similarity=0.141 Sum_probs=98.5
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 608 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~ 608 (759)
...++|.||.|.|.+...+....|...+++||+++.+++.|++...-..-++++++.+|+.+++....
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~------------ 83 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFF------------ 83 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhC------------
Confidence 45689999999999999999989999999999999999999876522112479999999999875542
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChhHHHHH
Q 004354 609 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMV 688 (759)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~~~~~v 688 (759)
.+..+|.|+++...+.+. -..-...++..+|++.+.+.|+|||.|.+.. ........+
T Consensus 84 ------------------~~~~~d~v~~~~pdpw~k--~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~t--d~~~~~~~~ 141 (194)
T TIGR00091 84 ------------------PDGSLSKVFLNFPDPWPK--KRHNKRRITQPHFLKEYANVLKKGGVIHFKT--DNEPLFEDM 141 (194)
T ss_pred ------------------CCCceeEEEEECCCcCCC--CCccccccCCHHHHHHHHHHhCCCCEEEEEe--CCHHHHHHH
Confidence 124799999965322211 0001234567899999999999999998654 445555556
Q ss_pred HHHHHHhc
Q 004354 689 ISRMKMVF 696 (759)
Q Consensus 689 ~~~l~~vF 696 (759)
++.+.+..
T Consensus 142 ~~~~~~~~ 149 (194)
T TIGR00091 142 LKVLSEND 149 (194)
T ss_pred HHHHHhCC
Confidence 66666653
No 136
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=98.84 E-value=4.6e-08 Score=98.04 Aligned_cols=98 Identities=16% Similarity=0.214 Sum_probs=79.1
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004354 530 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 606 (759)
Q Consensus 530 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~ 606 (759)
..+||.||.|+|.++..+....|..+|++||+++.+++.|++.. |+ ++++++.+|+.++. .
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~---~~i~~i~~d~~~~~---~---------- 106 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGL---NNVEIVNGRAEDFQ---H---------- 106 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCC---CCeEEEecchhhcc---c----------
Confidence 57999999999999998888888889999999999999998764 44 35999999987751 1
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEec
Q 004354 607 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 678 (759)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~ 678 (759)
..+||+|+.+.. .. -..+++.+.+.|+|||.+++-..
T Consensus 107 ---------------------~~~fD~I~s~~~-----~~---------~~~~~~~~~~~LkpgG~lvi~~~ 143 (181)
T TIGR00138 107 ---------------------EEQFDVITSRAL-----AS---------LNVLLELTLNLLKVGGYFLAYKG 143 (181)
T ss_pred ---------------------cCCccEEEehhh-----hC---------HHHHHHHHHHhcCCCCEEEEEcC
Confidence 257999998541 11 15688999999999999997653
No 137
>PRK00811 spermidine synthase; Provisional
Probab=98.84 E-value=1.7e-08 Score=108.26 Aligned_cols=99 Identities=18% Similarity=0.284 Sum_probs=81.0
Q ss_pred CCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhcc------CCCCcEEEEeecccCC----CcccEEE
Q 004354 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVR------DRSDMRWRVMDMTSMQ----GGLDALM 136 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~------~~~~i~f~~~D~~~~~----gtfD~Ii 136 (759)
.+.+||+||||+|..+..+++. +..+|+++|+++.+++.+++.+.. ..++++++.+|+.... ++||+|+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 155 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII 155 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence 4679999999999999999886 667899999999999999887632 3578999999987643 7899999
Q ss_pred eCCCChh------HHHHHHHHHHHhcccCcEEEEEE
Q 004354 137 EPELGHK------LGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 137 ~~~~~~~------~~~~~l~ei~rvLkpGG~liiit 166 (759)
+....+. ....+++.+++.|+|||++++..
T Consensus 156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 156 VDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred ECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 9642221 14788999999999999988753
No 138
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.82 E-value=3.6e-08 Score=106.89 Aligned_cols=100 Identities=15% Similarity=0.138 Sum_probs=80.5
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCC-CeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccCC-CcccEEEeCCCCh
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ-GGLDALMEPELGH 142 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~-~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~~-gtfD~Ii~~~~~~ 142 (759)
.+..+|||||||+|.++..+++... -+++++|. +.+++.++++....+ .+++++.+|+.+.+ +.+|+|++....|
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~~D~v~~~~~lh 226 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRILY 226 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCCCCCEEEeEhhhh
Confidence 5668999999999999999998843 36999997 789998888765433 46899999997644 5579988766433
Q ss_pred ----hHHHHHHHHHHHhcccCcEEEEEEc
Q 004354 143 ----KLGNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 143 ----~~~~~~l~ei~rvLkpGG~liiit~ 167 (759)
.....+++++++.|+|||++++.++
T Consensus 227 ~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 227 SANEQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred cCChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 2256899999999999999999975
No 139
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.82 E-value=4.2e-08 Score=111.29 Aligned_cols=102 Identities=16% Similarity=0.156 Sum_probs=82.8
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCC-CeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC-----CcccEEEeCCC
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-----GGLDALMEPEL 140 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~-~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~-----gtfD~Ii~~~~ 140 (759)
.++.+|||+|||+|..+..+++.+. ..|+++|+|+.+++.+++++...+.+++++++|+.+.. ++||.|+++..
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~P 322 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAP 322 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECCC
Confidence 5788999999999999999998743 46999999999999999988665556789999998653 67999996431
Q ss_pred ----C--------hh------------HHHHHHHHHHHhcccCcEEEEEEcC
Q 004354 141 ----G--------HK------------LGNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 141 ----~--------~~------------~~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
. .+ ...+++..+.++|||||++++.|..
T Consensus 323 cs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs 374 (427)
T PRK10901 323 CSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCS 374 (427)
T ss_pred CCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 0 01 1357899999999999999988863
No 140
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.80 E-value=2.2e-08 Score=99.48 Aligned_cols=97 Identities=18% Similarity=0.260 Sum_probs=75.7
Q ss_pred HHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC-----
Q 004354 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ----- 129 (759)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~----- 129 (759)
.+..++ +++.+|||+|||.|.+..+|.+. +. ..+|+|+++..+..+.++ .+..+++|+.+.-
T Consensus 6 ~I~~~I-----~pgsrVLDLGCGdG~LL~~L~~~k~v-~g~GvEid~~~v~~cv~r------Gv~Viq~Dld~gL~~f~d 73 (193)
T PF07021_consen 6 IIAEWI-----EPGSRVLDLGCGDGELLAYLKDEKQV-DGYGVEIDPDNVAACVAR------GVSVIQGDLDEGLADFPD 73 (193)
T ss_pred HHHHHc-----CCCCEEEecCCCchHHHHHHHHhcCC-eEEEEecCHHHHHHHHHc------CCCEEECCHHHhHhhCCC
Confidence 456666 46899999999999999999875 44 499999999998877665 4778999986533
Q ss_pred CcccEEEeCCCChhH--HHHHHHHHHHhcccCcEEEEEEcC
Q 004354 130 GGLDALMEPELGHKL--GNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 130 gtfD~Ii~~~~~~~~--~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
++||.|+++...... +..+++++.|+ |+-.+++|.
T Consensus 74 ~sFD~VIlsqtLQ~~~~P~~vL~EmlRV----gr~~IVsFP 110 (193)
T PF07021_consen 74 QSFDYVILSQTLQAVRRPDEVLEEMLRV----GRRAIVSFP 110 (193)
T ss_pred CCccEEehHhHHHhHhHHHHHHHHHHHh----cCeEEEEec
Confidence 899999998765544 88889998877 334455553
No 141
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.80 E-value=5e-08 Score=104.33 Aligned_cols=111 Identities=19% Similarity=0.215 Sum_probs=85.6
Q ss_pred eEEEECCCcchhHHHHHHhCC-CeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeecccCC-CcccEEEeCC----CC--
Q 004354 71 QILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ-GGLDALMEPE----LG-- 141 (759)
Q Consensus 71 ~ILDlGCG~G~ls~~L~~~G~-~~VtgIDiS~~~I~~a~~r~~~~~-~~i~f~~~D~~~~~-gtfD~Ii~~~----~~-- 141 (759)
+|||+|||+|.++..++.... .+|+|+|+|+.+++.|++++...+ .++.+++.|..... ++||+|++++ ..
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVsNPPYip~~~~ 192 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVSNPPYIPAEDP 192 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEeCCCCCCCccc
Confidence 799999999999999998855 379999999999999999886654 45566666765544 8999999975 00
Q ss_pred ---------------------hhHHHHHHHHHHHhcccCcEEEEEEc-CchhhhhhhccccC
Q 004354 142 ---------------------HKLGNQYLSEVKRLLKSGGKFVCLTL-AESHVLGLLFPKFR 181 (759)
Q Consensus 142 ---------------------~~~~~~~l~ei~rvLkpGG~liiit~-~~~~~~~~l~~~~~ 181 (759)
......++.++.+.|+|||.+++..- .+......++....
T Consensus 193 ~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~~~v~~~~~~~~ 254 (280)
T COG2890 193 ELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQGEAVKALFEDTG 254 (280)
T ss_pred ccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcHHHHHHHHHhcC
Confidence 01277888999999999998887753 56555555555543
No 142
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.80 E-value=1.1e-07 Score=97.07 Aligned_cols=131 Identities=12% Similarity=0.160 Sum_probs=93.1
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHh-hcccCcccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVRE-MKSSSATDEMSVV 607 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~-~~~~~~~~~~~~~ 607 (759)
...+||.||.|+|.++..|...+|..+|++||+++.+++.|++.+....-++++++++|+.+.+.. ..
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~----------- 108 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFP----------- 108 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcC-----------
Confidence 457899999999999999988888889999999999999999887432225799999999555442 22
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChhHHHH
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDM 687 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~~~~~ 687 (759)
...||+|++..- ++.......-.......+|+.+.+.|+|||.|++-. ........
T Consensus 109 --------------------~~~~D~V~~~~~--~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~--~~~~~~~~ 164 (202)
T PRK00121 109 --------------------DGSLDRIYLNFP--DPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT--DWEGYAEY 164 (202)
T ss_pred --------------------ccccceEEEECC--CCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc--CCHHHHHH
Confidence 357999998431 110000000011235889999999999999998643 44555555
Q ss_pred HHHHHHH
Q 004354 688 VISRMKM 694 (759)
Q Consensus 688 v~~~l~~ 694 (759)
+++.+++
T Consensus 165 ~~~~~~~ 171 (202)
T PRK00121 165 MLEVLSA 171 (202)
T ss_pred HHHHHHh
Confidence 5555554
No 143
>PRK04457 spermidine synthase; Provisional
Probab=98.80 E-value=6.1e-08 Score=102.81 Aligned_cols=103 Identities=18% Similarity=0.213 Sum_probs=81.4
Q ss_pred CCCeEEEECCCcchhHHHHHHhC-CCeEEEEeCCHHHHHHHHHHhcc--CCCCcEEEEeecccCC----CcccEEEeCCC
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVR--DRSDMRWRVMDMTSMQ----GGLDALMEPEL 140 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G-~~~VtgIDiS~~~I~~a~~r~~~--~~~~i~f~~~D~~~~~----gtfD~Ii~~~~ 140 (759)
++.+|||||||+|.++..++... -.+++++|+++.+++.+++.+.. ..++++++++|+.+.- ++||+|+++..
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~~ 145 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDGF 145 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeCC
Confidence 45789999999999999998762 24699999999999999887643 2468999999986542 68999998532
Q ss_pred Ch-----hH-HHHHHHHHHHhcccCcEEEEEEcCch
Q 004354 141 GH-----KL-GNQYLSEVKRLLKSGGKFVCLTLAES 170 (759)
Q Consensus 141 ~~-----~~-~~~~l~ei~rvLkpGG~liiit~~~~ 170 (759)
.. +. ...+++++.++|+|||++++..+..+
T Consensus 146 ~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~ 181 (262)
T PRK04457 146 DGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSRD 181 (262)
T ss_pred CCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCCc
Confidence 11 11 47999999999999999998655443
No 144
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.78 E-value=1.2e-08 Score=103.57 Aligned_cols=98 Identities=12% Similarity=0.197 Sum_probs=74.4
Q ss_pred CeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccCC---CcccEEEeCCCChhH
Q 004354 70 PQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ---GGLDALMEPELGHKL 144 (759)
Q Consensus 70 ~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~~---gtfD~Ii~~~~~~~~ 144 (759)
..++|+|||||.-+.-++.. |++|+|+|+|+.||+.+++...... ....+...++.++. ++.|+|+|....||.
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWF 113 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHWF 113 (261)
T ss_pred ceEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHhh
Confidence 38999999999666666665 8899999999999998876542221 12333334444444 799999999988998
Q ss_pred -HHHHHHHHHHhcccCc-EEEEEEcC
Q 004354 145 -GNQYLSEVKRLLKSGG-KFVCLTLA 168 (759)
Q Consensus 145 -~~~~l~ei~rvLkpGG-~liiit~~ 168 (759)
.++++++++|+||+.| .+.+-.+.
T Consensus 114 dle~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 114 DLERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred chHHHHHHHHHHcCCCCCEEEEEEcc
Confidence 9999999999999766 66666665
No 145
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.77 E-value=5.4e-08 Score=100.25 Aligned_cols=119 Identities=19% Similarity=0.338 Sum_probs=96.7
Q ss_pred CCCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCcccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDE 603 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~ 603 (759)
....+|+..|.|.|+|+++|.... |..+|+.+|++++.++.|+++| |+ ++++.+..+|..+.+..
T Consensus 93 ~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l--~d~v~~~~~Dv~~~~~~--------- 161 (256)
T COG2519 93 SPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGL--GDRVTLKLGDVREGIDE--------- 161 (256)
T ss_pred CCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhcc--ccceEEEeccccccccc---------
Confidence 345799999999999999999765 5579999999999999999987 65 56799999997776432
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChh
Q 004354 604 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQA 683 (759)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~ 683 (759)
..||+|++|+-.+ .++++++++.|+|||.+++-+. .-+
T Consensus 162 -------------------------~~vDav~LDmp~P---------------W~~le~~~~~Lkpgg~~~~y~P--~ve 199 (256)
T COG2519 162 -------------------------EDVDAVFLDLPDP---------------WNVLEHVSDALKPGGVVVVYSP--TVE 199 (256)
T ss_pred -------------------------cccCEEEEcCCCh---------------HHHHHHHHHHhCCCcEEEEEcC--CHH
Confidence 3699999998443 7899999999999999997654 444
Q ss_pred HHHHHHHHHHHh-cCce
Q 004354 684 TKDMVISRMKMV-FNHL 699 (759)
Q Consensus 684 ~~~~v~~~l~~v-F~~v 699 (759)
..+..+..|++. |-++
T Consensus 200 Qv~kt~~~l~~~g~~~i 216 (256)
T COG2519 200 QVEKTVEALRERGFVDI 216 (256)
T ss_pred HHHHHHHHHHhcCccch
Confidence 445678888887 6653
No 146
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.76 E-value=7.8e-08 Score=107.56 Aligned_cols=141 Identities=11% Similarity=0.063 Sum_probs=99.7
Q ss_pred cccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC---CCcEEEE
Q 004354 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR---SDMRWRV 122 (759)
Q Consensus 46 W~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~---~~i~f~~ 122 (759)
||.+....+..+..+. ++.+|||+|||+|.++..++..|..+|+++|+|+.+++.+++++...+ .++++++
T Consensus 204 ~flDqr~~R~~~~~~~------~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~ 277 (396)
T PRK15128 204 YYLDQRDSRLATRRYV------ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVR 277 (396)
T ss_pred cChhhHHHHHHHHHhc------CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEE
Confidence 5555444555555543 467999999999999988776677789999999999999998875543 3689999
Q ss_pred eecccCC-------CcccEEEeCCCC----h-------hHHHHHHHHHHHhcccCcEEEEEEcCc----hhhhhhhcccc
Q 004354 123 MDMTSMQ-------GGLDALMEPELG----H-------KLGNQYLSEVKRLLKSGGKFVCLTLAE----SHVLGLLFPKF 180 (759)
Q Consensus 123 ~D~~~~~-------gtfD~Ii~~~~~----~-------~~~~~~l~ei~rvLkpGG~liiit~~~----~~~~~~l~~~~ 180 (759)
+|+.+.. ++||+|++++.. . .....++..+.++|+|||.++..+.+. +.+...+....
T Consensus 278 ~D~~~~l~~~~~~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa 357 (396)
T PRK15128 278 DDVFKLLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAA 357 (396)
T ss_pred ccHHHHHHHHHhcCCCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHH
Confidence 9997752 589999997521 1 114566677889999999999877542 33444444333
Q ss_pred -CCCceEEEEEeC
Q 004354 181 -RFGWKMSVHAIP 192 (759)
Q Consensus 181 -~~~w~v~~~~~~ 192 (759)
..+..+++....
T Consensus 358 ~~~~~~~~~l~~~ 370 (396)
T PRK15128 358 IDAGRDVQFIEQF 370 (396)
T ss_pred HHcCCeEEEEEEc
Confidence 235566655543
No 147
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=5.6e-08 Score=98.04 Aligned_cols=109 Identities=15% Similarity=0.155 Sum_probs=87.2
Q ss_pred hhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeecccCC
Q 004354 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ 129 (759)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~-~~i~f~~~D~~~~~ 129 (759)
+.+...+.+.+.. .++.+|||||||+|..+.-|++..- +|+.+|+.+...+.|++++...+ .++.++++|...--
T Consensus 58 P~~vA~m~~~L~~---~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~ 133 (209)
T COG2518 58 PHMVARMLQLLEL---KPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGW 133 (209)
T ss_pred cHHHHHHHHHhCC---CCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCC
Confidence 4555666677665 7899999999999999999998844 69999999999999999886544 47999999986653
Q ss_pred ---CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEEc
Q 004354 130 ---GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 130 ---gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit~ 167 (759)
+.||.|++.......+. .+.+.|++||++++..-
T Consensus 134 ~~~aPyD~I~Vtaaa~~vP~----~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 134 PEEAPYDRIIVTAAAPEVPE----ALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CCCCCcCEEEEeeccCCCCH----HHHHhcccCCEEEEEEc
Confidence 89999999765433333 44567999999998764
No 148
>PHA03411 putative methyltransferase; Provisional
Probab=98.75 E-value=7.3e-08 Score=101.44 Aligned_cols=95 Identities=16% Similarity=0.096 Sum_probs=75.9
Q ss_pred CCCeEEEECCCcchhHHHHHHhC-CCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC--CcccEEEeCCCChh-
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--GGLDALMEPELGHK- 143 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G-~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~--gtfD~Ii~~~~~~~- 143 (759)
...+|||+|||+|.++..++... ..+|+++|+|+.+++.++++. ++++|+++|+.+.. .+||+|+++....+
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~----~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~l 139 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL----PEAEWITSDVFEFESNEKFDVVISNPPFGKI 139 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC----cCCEEEECchhhhcccCCCcEEEEcCCcccc
Confidence 45799999999999998887752 346999999999999887753 57899999998876 78999999652111
Q ss_pred ----------H-----------HHHHHHHHHHhcccCcEEEEEE
Q 004354 144 ----------L-----------GNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 144 ----------~-----------~~~~l~ei~rvLkpGG~liiit 166 (759)
. ..++++...++|+|+|.+++.-
T Consensus 140 ~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~y 183 (279)
T PHA03411 140 NTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAY 183 (279)
T ss_pred CchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEE
Confidence 0 3578888899999999877663
No 149
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=98.73 E-value=1.1e-07 Score=95.59 Aligned_cols=117 Identities=10% Similarity=0.123 Sum_probs=86.2
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
....+||.||.|+|.++..+....|..+|++||+++.+++.|++.+....-++++++.+|+... .
T Consensus 30 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~---~------------ 94 (187)
T PRK08287 30 HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIE---L------------ 94 (187)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhh---c------------
Confidence 3456899999999999999988888889999999999999999876211114699999986321 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChhHHHH
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDM 687 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~~~~~ 687 (759)
..+||+|+++.... .-.++++.+.+.|+|||.|+++.+..... ..
T Consensus 95 --------------------~~~~D~v~~~~~~~-------------~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~--~~ 139 (187)
T PRK08287 95 --------------------PGKADAIFIGGSGG-------------NLTAIIDWSLAHLHPGGRLVLTFILLENL--HS 139 (187)
T ss_pred --------------------CcCCCEEEECCCcc-------------CHHHHHHHHHHhcCCCeEEEEEEecHhhH--HH
Confidence 14699999853111 11578999999999999999987543322 34
Q ss_pred HHHHHHH
Q 004354 688 VISRMKM 694 (759)
Q Consensus 688 v~~~l~~ 694 (759)
+...+++
T Consensus 140 ~~~~l~~ 146 (187)
T PRK08287 140 ALAHLEK 146 (187)
T ss_pred HHHHHHH
Confidence 4555544
No 150
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.72 E-value=7e-08 Score=95.09 Aligned_cols=73 Identities=16% Similarity=0.175 Sum_probs=66.4
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCCCcccEEEeCC
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQGGLDALMEPE 139 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~gtfD~Ii~~~ 139 (759)
-.+..|+|+|||||.++...+-.|...|+|+|+++++++.++++..+...++.|+++|+.+..+.+|.++.++
T Consensus 44 l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~~~~dtvimNP 116 (198)
T COG2263 44 LEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFRGKFDTVIMNP 116 (198)
T ss_pred cCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcCCccceEEECC
Confidence 3566899999999999999998998889999999999999999887767789999999999999999999876
No 151
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.72 E-value=1.3e-07 Score=102.80 Aligned_cols=109 Identities=15% Similarity=0.092 Sum_probs=81.8
Q ss_pred hhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCC--CeEEEEeCCHHHHHHHHHHhccC-CCCcEEEEeeccc
Q 004354 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF--HGITNVDFSKVVISDMLRRNVRD-RSDMRWRVMDMTS 127 (759)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~--~~VtgIDiS~~~I~~a~~r~~~~-~~~i~f~~~D~~~ 127 (759)
+.+...+.+.+.. .++.+|||+|||+|.++..+++... ..|+++|+++.+++.+++++... ..++.++++|...
T Consensus 66 p~l~a~ll~~L~i---~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~ 142 (322)
T PRK13943 66 PSLMALFMEWVGL---DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYY 142 (322)
T ss_pred HHHHHHHHHhcCC---CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhh
Confidence 4444445555543 5678999999999999999987632 25999999999999998876543 3468999999866
Q ss_pred CC---CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEE
Q 004354 128 MQ---GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 128 ~~---gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit 166 (759)
.. +.||+|++..... .....+.+.|+|||++++..
T Consensus 143 ~~~~~~~fD~Ii~~~g~~----~ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 143 GVPEFAPYDVIFVTVGVD----EVPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred cccccCCccEEEECCchH----HhHHHHHHhcCCCCEEEEEe
Confidence 54 6799999975433 23445678999999988754
No 152
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.69 E-value=3.9e-07 Score=92.56 Aligned_cols=119 Identities=14% Similarity=0.167 Sum_probs=89.3
Q ss_pred CCCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCcccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDE 603 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~ 603 (759)
....+||.+|.|+|.++..+.... +..+|++||+++.+++.|++.+ |+ .+++.++.+|+.+++....
T Consensus 39 ~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~--~~~v~~~~~d~~~~l~~~~------- 109 (198)
T PRK00377 39 RKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGV--LNNIVLIKGEAPEILFTIN------- 109 (198)
T ss_pred CCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCC--CCCeEEEEechhhhHhhcC-------
Confidence 345689999999999988877654 4569999999999999999875 43 3679999999988775532
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChh
Q 004354 604 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQA 683 (759)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~ 683 (759)
..||+|++..... .-.++++.+.+.|+|||.+++.... ..
T Consensus 110 -------------------------~~~D~V~~~~~~~-------------~~~~~l~~~~~~LkpgG~lv~~~~~--~~ 149 (198)
T PRK00377 110 -------------------------EKFDRIFIGGGSE-------------KLKEIISASWEIIKKGGRIVIDAIL--LE 149 (198)
T ss_pred -------------------------CCCCEEEECCCcc-------------cHHHHHHHHHHHcCCCcEEEEEeec--HH
Confidence 4799999953211 1167899999999999999986642 22
Q ss_pred HHHHHHHHHHHh
Q 004354 684 TKDMVISRMKMV 695 (759)
Q Consensus 684 ~~~~v~~~l~~v 695 (759)
....+...|++.
T Consensus 150 ~~~~~~~~l~~~ 161 (198)
T PRK00377 150 TVNNALSALENI 161 (198)
T ss_pred HHHHHHHHHHHc
Confidence 334556666543
No 153
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.69 E-value=9.5e-08 Score=97.74 Aligned_cols=111 Identities=16% Similarity=0.197 Sum_probs=81.3
Q ss_pred chhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh-CCC-eEEEEeCCHHHHHHHHHHhcc-CCCCcEEEEeec
Q 004354 49 EWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFH-GITNVDFSKVVISDMLRRNVR-DRSDMRWRVMDM 125 (759)
Q Consensus 49 ~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~-G~~-~VtgIDiS~~~I~~a~~r~~~-~~~~i~f~~~D~ 125 (759)
..+.+...+.+++.. .++.+|||||||+|..+..|+.. |.. .|+++|+.+..++.|++++.. ...++.++++|.
T Consensus 56 s~P~~~a~~l~~L~l---~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg 132 (209)
T PF01135_consen 56 SAPSMVARMLEALDL---KPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDG 132 (209)
T ss_dssp --HHHHHHHHHHTTC----TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-G
T ss_pred hHHHHHHHHHHHHhc---CCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcch
Confidence 335566666677765 78999999999999999988876 432 599999999999999998865 345899999998
Q ss_pred ccCC---CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEE
Q 004354 126 TSMQ---GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 126 ~~~~---gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit 166 (759)
.... +.||.|++.......+ ..+.+.|++||++++.-
T Consensus 133 ~~g~~~~apfD~I~v~~a~~~ip----~~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 133 SEGWPEEAPFDRIIVTAAVPEIP----EALLEQLKPGGRLVAPI 172 (209)
T ss_dssp GGTTGGG-SEEEEEESSBBSS------HHHHHTEEEEEEEEEEE
T ss_pred hhccccCCCcCEEEEeeccchHH----HHHHHhcCCCcEEEEEE
Confidence 6644 7899999987554333 44566799999999865
No 154
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.68 E-value=1.8e-07 Score=92.50 Aligned_cols=96 Identities=10% Similarity=0.072 Sum_probs=71.5
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC---CcccEEEeCCCChh
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ---GGLDALMEPELGHK 143 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~---gtfD~Ii~~~~~~~ 143 (759)
.++.+|||+|||+|.++..+++.+ .+++++|+++.+++.++++... ..+++++++|+.++. ..||.|+++...+.
T Consensus 12 ~~~~~vLEiG~G~G~lt~~l~~~~-~~v~~vE~~~~~~~~~~~~~~~-~~~v~ii~~D~~~~~~~~~~~d~vi~n~Py~~ 89 (169)
T smart00650 12 RPGDTVLEIGPGKGALTEELLERA-ARVTAIEIDPRLAPRLREKFAA-ADNLTVIHGDALKFDLPKLQPYKVVGNLPYNI 89 (169)
T ss_pred CCcCEEEEECCCccHHHHHHHhcC-CeEEEEECCHHHHHHHHHHhcc-CCCEEEEECchhcCCccccCCCEEEECCCccc
Confidence 466799999999999999999885 4699999999999999887643 457999999999886 45999998764332
Q ss_pred HHHHHHHHHHHh--cccCcEEEEE
Q 004354 144 LGNQYLSEVKRL--LKSGGKFVCL 165 (759)
Q Consensus 144 ~~~~~l~ei~rv--LkpGG~liii 165 (759)
....+..+.+. +.++|.+++-
T Consensus 90 -~~~~i~~~l~~~~~~~~~~l~~q 112 (169)
T smart00650 90 -STPILFKLLEEPPAFRDAVLMVQ 112 (169)
T ss_pred -HHHHHHHHHhcCCCcceEEEEEE
Confidence 23333333332 3356666544
No 155
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.67 E-value=1e-07 Score=96.35 Aligned_cols=85 Identities=16% Similarity=0.221 Sum_probs=67.1
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccc-C---C-CcccEEEeCCCCh
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTS-M---Q-GGLDALMEPELGH 142 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~-~---~-gtfD~Ii~~~~~~ 142 (759)
++.+|||+|||+|.++..+++.+...++|+|+|+.+++.++++ +++++++|+.+ + + ++||+|+++...+
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~------~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~ 86 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR------GVNVIQGDLDEGLEAFPDKSFDYVILSQTLQ 86 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc------CCeEEEEEhhhcccccCCCCcCEEEEhhHhH
Confidence 5679999999999999988766444589999999999877542 47889999865 2 2 6899999987655
Q ss_pred hH--HHHHHHHHHHhccc
Q 004354 143 KL--GNQYLSEVKRLLKS 158 (759)
Q Consensus 143 ~~--~~~~l~ei~rvLkp 158 (759)
+. ...+++++.|++++
T Consensus 87 ~~~d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 87 ATRNPEEILDEMLRVGRH 104 (194)
T ss_pred cCcCHHHHHHHHHHhCCe
Confidence 44 77888888887653
No 156
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.67 E-value=5e-07 Score=86.99 Aligned_cols=113 Identities=15% Similarity=0.196 Sum_probs=91.8
Q ss_pred hhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCC--eEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccc
Q 004354 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFH--GITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTS 127 (759)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~--~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~ 127 (759)
.+.+++.+...+.. ..+..|||+|.|||-++..++..|.+ +++++++|+.......++. +.++++.+|+.+
T Consensus 33 Ss~lA~~M~s~I~p---esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~----p~~~ii~gda~~ 105 (194)
T COG3963 33 SSILARKMASVIDP---ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY----PGVNIINGDAFD 105 (194)
T ss_pred cHHHHHHHHhccCc---ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC----CCccccccchhh
Confidence 34455555555543 56789999999999999999999864 6999999999988776654 678899999988
Q ss_pred CC--------CcccEEEeCC----CChhHHHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 128 MQ--------GGLDALMEPE----LGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 128 ~~--------gtfD~Ii~~~----~~~~~~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
+. ..||.|+|.- ...+...++++.+...|.+||.++.++|++
T Consensus 106 l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYgp 159 (194)
T COG3963 106 LRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYGP 159 (194)
T ss_pred HHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEecC
Confidence 76 6799999953 334457889999999999999999999983
No 157
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.67 E-value=4.8e-07 Score=89.53 Aligned_cols=125 Identities=18% Similarity=0.245 Sum_probs=97.6
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhh---cCCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDY---FGFTQDKSLKVHITDGIKFVREMKSSSATDEM 604 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~---Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~ 604 (759)
.+..+++.||.|+|+++..+....|..++.++|-|++.++..+++ ||+ +++.++.+||-+++...
T Consensus 33 ~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~---~n~~vv~g~Ap~~L~~~--------- 100 (187)
T COG2242 33 RPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV---DNLEVVEGDAPEALPDL--------- 100 (187)
T ss_pred CCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC---CcEEEEeccchHhhcCC---------
Confidence 345689999999999998888888999999999999999998876 574 68999999999998754
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChhH
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQAT 684 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~~ 684 (759)
..+|+||+ +.. .++ ++.|+.+...|++||-+|+|.+.-....
T Consensus 101 ------------------------~~~daiFI----GGg-~~i---------~~ile~~~~~l~~ggrlV~naitlE~~~ 142 (187)
T COG2242 101 ------------------------PSPDAIFI----GGG-GNI---------EEILEAAWERLKPGGRLVANAITLETLA 142 (187)
T ss_pred ------------------------CCCCEEEE----CCC-CCH---------HHHHHHHHHHcCcCCeEEEEeecHHHHH
Confidence 26999999 322 223 7899999999999999999997654332
Q ss_pred HHHHHHHHHHhcC-ceEEEee
Q 004354 685 KDMVISRMKMVFN-HLFCLQL 704 (759)
Q Consensus 685 ~~~v~~~l~~vF~-~v~~~~~ 704 (759)
..++.+++.=- ++..+.+
T Consensus 143 --~a~~~~~~~g~~ei~~v~i 161 (187)
T COG2242 143 --KALEALEQLGGREIVQVQI 161 (187)
T ss_pred --HHHHHHHHcCCceEEEEEe
Confidence 34555554422 5555544
No 158
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=98.65 E-value=8.9e-08 Score=92.84 Aligned_cols=111 Identities=20% Similarity=0.259 Sum_probs=84.6
Q ss_pred CCCeEEEEcccccHHHHHHH-HhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLH-ECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 604 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~-~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~ 604 (759)
...+||.||+|.|.+...|. ...|..++++||+++.+++.|++.+ ++ ++++++++|..+ +...-
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~---~ni~~~~~d~~~-l~~~~-------- 70 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGL---DNIEFIQGDIED-LPQEL-------- 70 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTS---TTEEEEESBTTC-GCGCS--------
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccc---cccceEEeehhc-ccccc--------
Confidence 45799999999999999888 5567889999999999999999965 55 389999999877 33210
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCCh-HHHHHHHHHccCcCcEEEEEecCCChh
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE-GSFLLTVKDALSEQGLFIVNLVSRSQA 683 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~-~~fl~~~~~~L~~~Gilv~N~~~~~~~ 683 (759)
...||+|+....- ..+-+ ..+|+.+.+.|+++|++++.......+
T Consensus 71 -----------------------~~~~D~I~~~~~l-----------~~~~~~~~~l~~~~~~lk~~G~~i~~~~~~~~~ 116 (152)
T PF13847_consen 71 -----------------------EEKFDIIISNGVL-----------HHFPDPEKVLKNIIRLLKPGGILIISDPNHNDE 116 (152)
T ss_dssp -----------------------STTEEEEEEESTG-----------GGTSHHHHHHHHHHHHEEEEEEEEEEEEEHSHH
T ss_pred -----------------------CCCeeEEEEcCch-----------hhccCHHHHHHHHHHHcCCCcEEEEEECChHHH
Confidence 1579999995211 22222 479999999999999999887664444
Q ss_pred HH
Q 004354 684 TK 685 (759)
Q Consensus 684 ~~ 685 (759)
..
T Consensus 117 ~~ 118 (152)
T PF13847_consen 117 LP 118 (152)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 159
>PRK01581 speE spermidine synthase; Validated
Probab=98.64 E-value=7.6e-07 Score=97.24 Aligned_cols=100 Identities=16% Similarity=0.220 Sum_probs=79.5
Q ss_pred CCCeEEEECCCcchhHHHHHHhC-CCeEEEEeCCHHHHHHHHHHh--------ccCCCCcEEEEeecccCC----CcccE
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRN--------VRDRSDMRWRVMDMTSMQ----GGLDA 134 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G-~~~VtgIDiS~~~I~~a~~r~--------~~~~~~i~f~~~D~~~~~----gtfD~ 134 (759)
...+||++|||+|..+..+++.. ..+|+++|+++.+++.|++.. .-..++++++.+|+.+.- +.||+
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDV 229 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDV 229 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccE
Confidence 45699999999999999888763 467999999999999998621 113578999999988753 78999
Q ss_pred EEeCCCCh------hH-HHHHHHHHHHhcccCcEEEEEEc
Q 004354 135 LMEPELGH------KL-GNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 135 Ii~~~~~~------~~-~~~~l~ei~rvLkpGG~liiit~ 167 (759)
|++..... .. -..+++.+++.|+|||++++..-
T Consensus 230 IIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 230 IIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred EEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 99974221 11 47799999999999999888754
No 160
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.64 E-value=3.1e-07 Score=104.84 Aligned_cols=103 Identities=20% Similarity=0.155 Sum_probs=81.8
Q ss_pred CCCCeEEEECCCcchhHHHHHHh--CCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeecccCC--CcccEEEeCC--
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ--GGLDALMEPE-- 139 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~--G~~~VtgIDiS~~~I~~a~~r~~~~~-~~i~f~~~D~~~~~--gtfD~Ii~~~-- 139 (759)
.++.+|||+|||+|..+..+++. +...|+++|+|+.+++.+++++...+ .+++++++|+.+.. ++||+|++..
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl~D~Pc 328 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAILLDAPC 328 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEEEcCCC
Confidence 56789999999999999888764 12369999999999999998875543 46899999998765 7899999632
Q ss_pred --CCh-------------h-------HHHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 140 --LGH-------------K-------LGNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 140 --~~~-------------~-------~~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
... . ....++.++.++|+|||++++.|.+-
T Consensus 329 sg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 329 TGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred CCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 110 0 13468999999999999999999763
No 161
>PRK04148 hypothetical protein; Provisional
Probab=98.64 E-value=4e-07 Score=86.01 Aligned_cols=105 Identities=11% Similarity=0.150 Sum_probs=77.8
Q ss_pred hHHHHHHhhcCCCCCCCCeEEEECCCcch-hHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC--
Q 004354 53 LRDPLISLIGAPTSSPPPQILVPGCGNSR-LSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-- 129 (759)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDlGCG~G~-ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~-- 129 (759)
+...+.+.+.. ..+.+|||||||.|. ++..|.+.|+. |+++|+++.+++.++++ .+++++.|+++..
T Consensus 4 i~~~l~~~~~~---~~~~kileIG~GfG~~vA~~L~~~G~~-ViaIDi~~~aV~~a~~~------~~~~v~dDlf~p~~~ 73 (134)
T PRK04148 4 IAEFIAENYEK---GKNKKIVELGIGFYFKVAKKLKESGFD-VIVIDINEKAVEKAKKL------GLNAFVDDLFNPNLE 73 (134)
T ss_pred HHHHHHHhccc---ccCCEEEEEEecCCHHHHHHHHHCCCE-EEEEECCHHHHHHHHHh------CCeEEECcCCCCCHH
Confidence 44455555543 356789999999996 99999988885 99999999999888665 3789999999887
Q ss_pred --CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEEcCch
Q 004354 130 --GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 170 (759)
Q Consensus 130 --gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit~~~~ 170 (759)
..+|+|++.....+....+++ +.+-+ |.-+++.+++.+
T Consensus 74 ~y~~a~liysirpp~el~~~~~~-la~~~--~~~~~i~~l~~e 113 (134)
T PRK04148 74 IYKNAKLIYSIRPPRDLQPFILE-LAKKI--NVPLIIKPLSGE 113 (134)
T ss_pred HHhcCCEEEEeCCCHHHHHHHHH-HHHHc--CCCEEEEcCCCC
Confidence 789999997765544333333 33332 566777777654
No 162
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.63 E-value=3.1e-07 Score=93.04 Aligned_cols=105 Identities=19% Similarity=0.147 Sum_probs=81.4
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 608 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~ 608 (759)
...+||.+|.|.|.++..+....|..+|++||+||.+++.|++++....-++++++.+|+.+.+....
T Consensus 40 ~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~------------ 107 (196)
T PRK07402 40 PDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLA------------ 107 (196)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCC------------
Confidence 44689999999999999888777878999999999999999987521112469999999877544322
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecC
Q 004354 609 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 679 (759)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~ 679 (759)
..+|.|++|... . -..+++.+.+.|+|||.|+++...
T Consensus 108 --------------------~~~d~v~~~~~~--~------------~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 108 --------------------PAPDRVCIEGGR--P------------IKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred --------------------CCCCEEEEECCc--C------------HHHHHHHHHHhcCCCeEEEEEeec
Confidence 346778875311 0 167999999999999999998754
No 163
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.62 E-value=1.9e-07 Score=99.53 Aligned_cols=100 Identities=19% Similarity=0.264 Sum_probs=79.0
Q ss_pred CCCeEEEECCCcchhHHHHHHhC-CCeEEEEeCCHHHHHHHHHHhcc-----CCCCcEEEEeecccC----CCcccEEEe
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVR-----DRSDMRWRVMDMTSM----QGGLDALME 137 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G-~~~VtgIDiS~~~I~~a~~r~~~-----~~~~i~f~~~D~~~~----~gtfD~Ii~ 137 (759)
.+.+||+||||+|.++..+++.+ ..+++++|+++.+++.+++.+.. ..++++++.+|..+. .++||+|++
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 34599999999999999888775 56799999999999999886532 235788888887653 278999998
Q ss_pred CCCCh-----hH-HHHHHHHHHHhcccCcEEEEEEc
Q 004354 138 PELGH-----KL-GNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 138 ~~~~~-----~~-~~~~l~ei~rvLkpGG~liiit~ 167 (759)
..... .. ...+++.+.+.|+|||.+++.+-
T Consensus 152 D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~ 187 (270)
T TIGR00417 152 DSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSE 187 (270)
T ss_pred eCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCC
Confidence 65311 11 56889999999999999998743
No 164
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.62 E-value=3.4e-07 Score=97.33 Aligned_cols=102 Identities=19% Similarity=0.198 Sum_probs=81.2
Q ss_pred CCCCeEEEECCCcchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeecccCC---CcccEEEeCC-
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAG--FHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ---GGLDALMEPE- 139 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G--~~~VtgIDiS~~~I~~a~~r~~~~~-~~i~f~~~D~~~~~---gtfD~Ii~~~- 139 (759)
.++.+|||+|||+|..+..+++.. -..|+++|+++.+++.+++++...+ .++.+++.|+..+. +.||+|+++.
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~P 149 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAP 149 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcCC
Confidence 577899999999999999988752 1369999999999999998876543 46899999987755 6799999742
Q ss_pred ---CC-------------h-------hHHHHHHHHHHHhcccCcEEEEEEcC
Q 004354 140 ---LG-------------H-------KLGNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 140 ---~~-------------~-------~~~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
.. . .....+|+.+.++|||||+++..|.+
T Consensus 150 csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs 201 (264)
T TIGR00446 150 CSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCS 201 (264)
T ss_pred CCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 10 0 01356999999999999999998765
No 165
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.62 E-value=2.8e-07 Score=105.13 Aligned_cols=110 Identities=14% Similarity=0.192 Sum_probs=84.6
Q ss_pred HHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeecccCC---
Q 004354 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG--FHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ--- 129 (759)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G--~~~VtgIDiS~~~I~~a~~r~~~~~-~~i~f~~~D~~~~~--- 129 (759)
.+...+.. .++.+|||+|||+|..+..+++.. ...|+++|+++.+++.+++++...+ .+++++++|+.+..
T Consensus 241 lv~~~l~~---~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~ 317 (444)
T PRK14902 241 LVAPALDP---KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKF 317 (444)
T ss_pred HHHHHhCC---CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchh
Confidence 44444443 567899999999999999998752 3469999999999999988875543 45899999998764
Q ss_pred -CcccEEEeCCC----C--------h-----h-------HHHHHHHHHHHhcccCcEEEEEEcC
Q 004354 130 -GGLDALMEPEL----G--------H-----K-------LGNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 130 -gtfD~Ii~~~~----~--------~-----~-------~~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
++||+|+++.. . . . ....++.++.++|||||+++..|..
T Consensus 318 ~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs 381 (444)
T PRK14902 318 AEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT 381 (444)
T ss_pred cccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 68999997531 0 0 0 1356899999999999999987654
No 166
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.62 E-value=6e-07 Score=96.43 Aligned_cols=114 Identities=17% Similarity=0.298 Sum_probs=84.4
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCcccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMS 605 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~ 605 (759)
.+.+||.+|.|.|+++..+....|..++++||+++.++++|++.. |+ +++++++.+|..+.+ .
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~--~~~i~~~~~D~~~~~---~--------- 186 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGL--EDRVTLIQSDLFAAL---P--------- 186 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEECchhhcc---C---------
Confidence 346899999999999999999989889999999999999999987 44 468999999986543 1
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCC--CCCC-----CcCCCCC--------ChHHHHHHHHHccCcC
Q 004354 606 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDS--SSGM-----TCPAADF--------VEGSFLLTVKDALSEQ 670 (759)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~--~~g~-----scPp~~f--------~~~~fl~~~~~~L~~~ 670 (759)
..+||+|+.|.--... ...+ ..|...+ .-..++..+.+.|+||
T Consensus 187 ----------------------~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~g 244 (284)
T TIGR03533 187 ----------------------GRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNEN 244 (284)
T ss_pred ----------------------CCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCC
Confidence 2469999997411100 0001 0111111 1256889999999999
Q ss_pred cEEEEEec
Q 004354 671 GLFIVNLV 678 (759)
Q Consensus 671 Gilv~N~~ 678 (759)
|.+++.+.
T Consensus 245 G~l~~e~g 252 (284)
T TIGR03533 245 GVLVVEVG 252 (284)
T ss_pred CEEEEEEC
Confidence 99999885
No 167
>PLN02366 spermidine synthase
Probab=98.62 E-value=2.6e-07 Score=99.98 Aligned_cols=99 Identities=19% Similarity=0.295 Sum_probs=79.4
Q ss_pred CCCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhcc-----CCCCcEEEEeecccC----C-CcccEE
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVR-----DRSDMRWRVMDMTSM----Q-GGLDAL 135 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~-----~~~~i~f~~~D~~~~----~-gtfD~I 135 (759)
+...+||+||||.|.++..+++. +..+|+.+|+++.+++.+++.+.. ..++++++.+|+... + +.||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 35679999999999999999886 346799999999999999887632 346899999997543 2 689999
Q ss_pred EeCCCChh------HHHHHHHHHHHhcccCcEEEEE
Q 004354 136 MEPELGHK------LGNQYLSEVKRLLKSGGKFVCL 165 (759)
Q Consensus 136 i~~~~~~~------~~~~~l~ei~rvLkpGG~liii 165 (759)
++....+. .-..+++.+++.|+|||.++..
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 99643221 1567899999999999998764
No 168
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.62 E-value=1.1e-07 Score=96.63 Aligned_cols=99 Identities=21% Similarity=0.255 Sum_probs=74.5
Q ss_pred CCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhccCC------C------------------------
Q 004354 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR------S------------------------ 116 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~~~------~------------------------ 116 (759)
.+..+|||||-+|.++..+++. |...|.|+||.+..|+.|++.+..-. .
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence 3568999999999999999986 77789999999999999998763210 0
Q ss_pred ------C-------cEEEEeecccCC-CcccEEEeCCCChh--------HHHHHHHHHHHhcccCcEEEEEE
Q 004354 117 ------D-------MRWRVMDMTSMQ-GGLDALMEPELGHK--------LGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 117 ------~-------i~f~~~D~~~~~-gtfD~Ii~~~~~~~--------~~~~~l~ei~rvLkpGG~liiit 166 (759)
+ .-+...|+.++. ..||+|+|.....| -+..+|+.+.++|.|||+|++.-
T Consensus 138 t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEP 209 (288)
T KOG2899|consen 138 TTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEP 209 (288)
T ss_pred cccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcC
Confidence 0 111222333333 78999999653222 28999999999999999999874
No 169
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.61 E-value=1.6e-08 Score=101.64 Aligned_cols=96 Identities=21% Similarity=0.265 Sum_probs=73.7
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC-----CcccEEEeCCCC
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-----GGLDALMEPELG 141 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~-----gtfD~Ii~~~~~ 141 (759)
.+-.++||+|||||..+..|.+. ..+++|+|||+.|++.|.++- .-=...++|+..+. ..||+|.+.+..
T Consensus 124 g~F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl~kA~eKg----~YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl 198 (287)
T COG4976 124 GPFRRMLDLGCGTGLTGEALRDM-ADRLTGVDISENMLAKAHEKG----LYDTLYVAEAVLFLEDLTQERFDLIVAADVL 198 (287)
T ss_pred CccceeeecccCcCcccHhHHHH-HhhccCCchhHHHHHHHHhcc----chHHHHHHHHHHHhhhccCCcccchhhhhHH
Confidence 34578999999999999999887 556999999999999887652 11122333332211 789999998765
Q ss_pred hhH--HHHHHHHHHHhcccCcEEEEEEc
Q 004354 142 HKL--GNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 142 ~~~--~~~~l~ei~rvLkpGG~liiit~ 167 (759)
... .+.++.-+...|+|||.|.+.+-
T Consensus 199 ~YlG~Le~~~~~aa~~L~~gGlfaFSvE 226 (287)
T COG4976 199 PYLGALEGLFAGAAGLLAPGGLFAFSVE 226 (287)
T ss_pred HhhcchhhHHHHHHHhcCCCceEEEEec
Confidence 554 88999999999999999998863
No 170
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.61 E-value=9.1e-07 Score=94.02 Aligned_cols=137 Identities=13% Similarity=0.121 Sum_probs=101.6
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCC-CcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPF-VGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~-~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
...+||.+|.|.|..+..+...++. ..|++||+++..++.+++.+....-.+++++.+|+..+-..
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~------------- 137 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAA------------- 137 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhh-------------
Confidence 4468999999999999998887753 58999999999999999887221124699999998775221
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCC--------------ChHHHHHHHHHccCcCcEE
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF--------------VEGSFLLTVKDALSEQGLF 673 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f--------------~~~~fl~~~~~~L~~~Gil 673 (759)
...||+|++|+-.+. .|+-...+.. ...++|+.+.+.|+|||.|
T Consensus 138 --------------------~~~fD~Vl~D~Pcsg--~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~l 195 (264)
T TIGR00446 138 --------------------VPKFDAILLDAPCSG--EGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVL 195 (264)
T ss_pred --------------------ccCCCEEEEcCCCCC--CcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEE
Confidence 135999999985442 2222222211 3467999999999999999
Q ss_pred EEEecCCChhHHHHHHHHHHHhcCceE
Q 004354 674 IVNLVSRSQATKDMVISRMKMVFNHLF 700 (759)
Q Consensus 674 v~N~~~~~~~~~~~v~~~l~~vF~~v~ 700 (759)
++-..+...+.-+.+++.+.+.++...
T Consensus 196 vYstcs~~~~Ene~vv~~~l~~~~~~~ 222 (264)
T TIGR00446 196 VYSTCSLEPEENEAVVDYLLEKRPDVV 222 (264)
T ss_pred EEEeCCCChHHHHHHHHHHHHhCCCcE
Confidence 988766677666788888888776543
No 171
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.61 E-value=4.2e-07 Score=103.14 Aligned_cols=102 Identities=19% Similarity=0.270 Sum_probs=82.3
Q ss_pred CCCCeEEEECCCcchhHHHHHHh--CCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeecccCC----CcccEEEeCC
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ----GGLDALMEPE 139 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~--G~~~VtgIDiS~~~I~~a~~r~~~~~-~~i~f~~~D~~~~~----gtfD~Ii~~~ 139 (759)
.++.+|||+|||+|..+.+++.. +-..|+++|+|+.+++.+++++...+ .++++.++|+..++ +.||.|+++.
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~Da 315 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVDA 315 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEECC
Confidence 57789999999999999999875 12369999999999999998876543 45889999998764 7899999742
Q ss_pred ----CCh--------------------hHHHHHHHHHHHhcccCcEEEEEEcC
Q 004354 140 ----LGH--------------------KLGNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 140 ----~~~--------------------~~~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
... ....+++.++.+.|||||+++..|.+
T Consensus 316 PCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs 368 (431)
T PRK14903 316 PCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCT 368 (431)
T ss_pred CCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 110 01467799999999999999999876
No 172
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.60 E-value=3.3e-07 Score=96.80 Aligned_cols=101 Identities=19% Similarity=0.284 Sum_probs=79.7
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
..+.+||.||+|+|.++..|...+|..+|++||++|.+++.|++. +++++.+|+.++. .
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~---~----------- 86 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-------GVDARTGDVRDWK---P----------- 86 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-------CCcEEEcChhhCC---C-----------
Confidence 455799999999999999999988888999999999999999763 4788999976541 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecC
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 679 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~ 679 (759)
...||+|+...- ..-+ |. -..+++.+.+.|+|||.|++++..
T Consensus 87 --------------------~~~fD~v~~~~~----l~~~--~d----~~~~l~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 87 --------------------KPDTDVVVSNAA----LQWV--PE----HADLLVRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred --------------------CCCceEEEEehh----hhhC--CC----HHHHHHHHHHhCCCCcEEEEEcCC
Confidence 257999998321 1111 11 267999999999999999998654
No 173
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.60 E-value=2.2e-07 Score=95.68 Aligned_cols=102 Identities=20% Similarity=0.190 Sum_probs=77.5
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 606 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~ 606 (759)
....+||.||.|.|.++.+|....+ ..+|++||++|.+++.|++.+.-..-++++++.+|+.+....
T Consensus 76 ~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~------------ 143 (215)
T TIGR00080 76 KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEP------------ 143 (215)
T ss_pred CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcc------------
Confidence 3457999999999999999988864 357999999999999999987322225799999998654211
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEec
Q 004354 607 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 678 (759)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~ 678 (759)
...||+|++|.... ...+.+.+.|+|||.|++.+.
T Consensus 144 ---------------------~~~fD~Ii~~~~~~----------------~~~~~~~~~L~~gG~lv~~~~ 178 (215)
T TIGR00080 144 ---------------------LAPYDRIYVTAAGP----------------KIPEALIDQLKEGGILVMPVG 178 (215)
T ss_pred ---------------------cCCCCEEEEcCCcc----------------cccHHHHHhcCcCcEEEEEEc
Confidence 24799999964221 123457788999999999874
No 174
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.60 E-value=7.1e-07 Score=95.00 Aligned_cols=151 Identities=13% Similarity=0.157 Sum_probs=99.2
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
....+||.+|.|.|.++..+...+|..+++++|+++.+++.|++.+......+++++.+|..+.+.
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~-------------- 172 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLP-------------- 172 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCC--------------
Confidence 345789999999999999999998889999999999999999999752235689999998733211
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCC--CC------CcCCCCCC--------hHHHHHHHHHccCcCc
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSS--GM------TCPAADFV--------EGSFLLTVKDALSEQG 671 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~--g~------scPp~~f~--------~~~fl~~~~~~L~~~G 671 (759)
..+||+|+.+..-..... .+ ..|...+. -..+++.+.+.|+|||
T Consensus 173 --------------------~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG 232 (275)
T PRK09328 173 --------------------GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGG 232 (275)
T ss_pred --------------------CCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCC
Confidence 257999998642111000 00 01111121 2568888889999999
Q ss_pred EEEEEecCCChhHHHHHHHHHHH-hcCceEEEeecCCccEEEEEe
Q 004354 672 LFIVNLVSRSQATKDMVISRMKM-VFNHLFCLQLEEDVNLVLFGL 715 (759)
Q Consensus 672 ilv~N~~~~~~~~~~~v~~~l~~-vF~~v~~~~~~~~~N~Vl~a~ 715 (759)
.+++.+.... ...+...+.+ -|..+..+.--.+...++++.
T Consensus 233 ~l~~e~g~~~---~~~~~~~l~~~gf~~v~~~~d~~~~~r~~~~~ 274 (275)
T PRK09328 233 WLLLEIGYDQ---GEAVRALLAAAGFADVETRKDLAGRDRVVLGR 274 (275)
T ss_pred EEEEEECchH---HHHHHHHHHhCCCceeEEecCCCCCceEEEEE
Confidence 9999763322 2234444443 355554443233455666653
No 175
>PHA03412 putative methyltransferase; Provisional
Probab=98.59 E-value=2.7e-07 Score=95.09 Aligned_cols=90 Identities=11% Similarity=0.077 Sum_probs=70.8
Q ss_pred CCCeEEEECCCcchhHHHHHHh----CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC--CcccEEEeCCCC
Q 004354 68 PPPQILVPGCGNSRLSEHLYDA----GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--GGLDALMEPELG 141 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~----G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~--gtfD~Ii~~~~~ 141 (759)
.+.+|||+|||+|.++..++.. ...+|+++|+++.+++.|+++. +++.|+++|+.... ++||+|++++..
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~----~~~~~~~~D~~~~~~~~~FDlIIsNPPY 124 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV----PEATWINADALTTEFDTLFDMAISNPPF 124 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc----cCCEEEEcchhcccccCCccEEEECCCC
Confidence 4679999999999999988764 2236999999999999998664 46899999997655 789999997621
Q ss_pred h--------------hHHHHHHHHHHHhcccCcE
Q 004354 142 H--------------KLGNQYLSEVKRLLKSGGK 161 (759)
Q Consensus 142 ~--------------~~~~~~l~ei~rvLkpGG~ 161 (759)
. .....+++.+.+++++|+.
T Consensus 125 ~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 125 GKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred CCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 1 1256788888887766664
No 176
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.59 E-value=3.7e-07 Score=95.23 Aligned_cols=99 Identities=15% Similarity=0.015 Sum_probs=79.2
Q ss_pred CCCCeEEEECCCcchhHHHHHHh--CCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccC---------CCccc
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM---------QGGLD 133 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~--G~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~---------~gtfD 133 (759)
.+..+|||+|||+|..+..++.. +-.+|+++|+++.+++.|++++...+ .+++++.+|+.+. .++||
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD 146 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFD 146 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCC
Confidence 45679999999999988888764 23469999999999999998876543 4689999998764 15899
Q ss_pred EEEeCCCChhHHHHHHHHHHHhcccCcEEEEEE
Q 004354 134 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 134 ~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit 166 (759)
+|++... ......++..+.++|+|||.+++-.
T Consensus 147 ~VfiDa~-k~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 147 FAFVDAD-KPNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred EEEECCC-HHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 9999653 2345689999999999999877643
No 177
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.59 E-value=2.4e-06 Score=88.62 Aligned_cols=105 Identities=10% Similarity=0.126 Sum_probs=78.5
Q ss_pred CCCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 606 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~ 606 (759)
....+||.||+|.|.++..+.+.. |..++++||++|.+++.|++.+.-..-++++++.+|+.++. .
T Consensus 44 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~----------- 110 (231)
T TIGR02752 44 QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELP--F----------- 110 (231)
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCC--C-----------
Confidence 345799999999999998888775 56799999999999999998863212357999999976531 1
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEE
Q 004354 607 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 675 (759)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~ 675 (759)
...+||+|++...- ..+. --..+|+.+.+.|+|||.+++
T Consensus 111 --------------------~~~~fD~V~~~~~l----~~~~------~~~~~l~~~~~~Lk~gG~l~~ 149 (231)
T TIGR02752 111 --------------------DDNSFDYVTIGFGL----RNVP------DYMQVLREMYRVVKPGGKVVC 149 (231)
T ss_pred --------------------CCCCccEEEEeccc----ccCC------CHHHHHHHHHHHcCcCeEEEE
Confidence 13579999984211 1111 125789999999999998875
No 178
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.58 E-value=2.5e-07 Score=93.79 Aligned_cols=102 Identities=22% Similarity=0.319 Sum_probs=79.4
Q ss_pred CCeEEEECCCcchhHHHHHHhCC-CeEEEEeCCHHHHHHHHHHhcc-CCCCcEEEEeecccCC------CcccEEEeCCC
Q 004354 69 PPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVR-DRSDMRWRVMDMTSMQ------GGLDALMEPEL 140 (759)
Q Consensus 69 ~~~ILDlGCG~G~ls~~L~~~G~-~~VtgIDiS~~~I~~a~~r~~~-~~~~i~f~~~D~~~~~------gtfD~Ii~~~~ 140 (759)
...+||||||.|.+...++.... .+++|+|++...+..+.++... ...|+.++++|+...- +++|.|+.+..
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 34899999999999999998743 4799999999999998887744 5679999999998732 89999998653
Q ss_pred ChhH----------HHHHHHHHHHhcccCcEEEEEEcCch
Q 004354 141 GHKL----------GNQYLSEVKRLLKSGGKFVCLTLAES 170 (759)
Q Consensus 141 ~~~~----------~~~~l~ei~rvLkpGG~liiit~~~~ 170 (759)
.+|. -..++..+.++|+|||.+.+.|=..+
T Consensus 98 DPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~ 137 (195)
T PF02390_consen 98 DPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEE 137 (195)
T ss_dssp ----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HH
T ss_pred CCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHH
Confidence 3321 68899999999999999999986554
No 179
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.57 E-value=6e-07 Score=97.89 Aligned_cols=119 Identities=13% Similarity=0.191 Sum_probs=81.0
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeecccCC----CcccEEEeCCCCh
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ----GGLDALMEPELGH 142 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~-~~i~f~~~D~~~~~----gtfD~Ii~~~~~~ 142 (759)
++.+|||+|||+|.++..++..+ .+|+|+|+|+.+++.+++++...+ .+++|+++|+.++. +.||+|++++.-.
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr~ 251 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPPRR 251 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCCCC
Confidence 45799999999999999999886 469999999999999988875433 46999999997753 5799999976322
Q ss_pred hHHHHHHHHHHHhcccCcEEEEEEcCchhhhhhhccccCCCceEEEEEe
Q 004354 143 KLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAI 191 (759)
Q Consensus 143 ~~~~~~l~ei~rvLkpGG~liiit~~~~~~~~~l~~~~~~~w~v~~~~~ 191 (759)
.....+++.+ ..++|++ ++.++..+....+.+- .+ .+|.+.....
T Consensus 252 G~~~~~~~~l-~~~~~~~-ivyvsc~p~t~~rd~~-~l-~~y~~~~~~~ 296 (315)
T PRK03522 252 GIGKELCDYL-SQMAPRF-ILYSSCNAQTMAKDLA-HL-PGYRIERVQL 296 (315)
T ss_pred CccHHHHHHH-HHcCCCe-EEEEECCcccchhHHh-hc-cCcEEEEEEE
Confidence 1122333333 3356654 5555555443333322 22 3666665443
No 180
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.57 E-value=7.4e-07 Score=101.70 Aligned_cols=122 Identities=11% Similarity=0.154 Sum_probs=85.0
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccC-CCCcEEEEeecccCC-------CcccEEEeC
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD-RSDMRWRVMDMTSMQ-------GGLDALMEP 138 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~-~~~i~f~~~D~~~~~-------gtfD~Ii~~ 138 (759)
.++.+|||+|||+|.++..|++.+ ..|+|+|+|+.|++.|++++... ..+++|+++|+.+.. ++||+|+++
T Consensus 296 ~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~d 374 (443)
T PRK13168 296 QPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLD 374 (443)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEEC
Confidence 567899999999999999999875 56999999999999998876543 346999999986421 579999997
Q ss_pred CCChhHHHHHHHHHHHhcccCcEEEEEEcCchhhhhhhccccCCCceEEEEEeC
Q 004354 139 ELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAIP 192 (759)
Q Consensus 139 ~~~~~~~~~~l~ei~rvLkpGG~liiit~~~~~~~~~l~~~~~~~w~v~~~~~~ 192 (759)
..... ....+..+.+ ++|++. +.++..+..+.+.+-.....+|.+......
T Consensus 375 PPr~g-~~~~~~~l~~-~~~~~i-vyvSCnp~tlaRDl~~L~~~gY~l~~i~~~ 425 (443)
T PRK13168 375 PPRAG-AAEVMQALAK-LGPKRI-VYVSCNPATLARDAGVLVEAGYRLKRAGML 425 (443)
T ss_pred cCCcC-hHHHHHHHHh-cCCCeE-EEEEeChHHhhccHHHHhhCCcEEEEEEEe
Confidence 63222 3355555555 577665 555555444443333332446776654443
No 181
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.56 E-value=5.3e-07 Score=95.21 Aligned_cols=110 Identities=15% Similarity=0.175 Sum_probs=82.1
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC-CCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF-TQDKSLKVHITDGIKFVREMKSSSATDEMSV 606 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl-~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~ 606 (759)
..+.+||.||+|.|.++..|... ..+|++||+++.+++.|++...- ...++++++.+|+.+.....
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~----------- 109 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHL----------- 109 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhc-----------
Confidence 34579999999999999988876 36899999999999999998621 12468999999998763221
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCC
Q 004354 607 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS 681 (759)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~ 681 (759)
...||+|++.. ....+..| ..+|+.+.+.|+|||+|++-.+..+
T Consensus 110 ---------------------~~~fD~V~~~~----vl~~~~~~------~~~l~~~~~~LkpgG~l~i~~~n~~ 153 (255)
T PRK11036 110 ---------------------ETPVDLILFHA----VLEWVADP------KSVLQTLWSVLRPGGALSLMFYNAN 153 (255)
T ss_pred ---------------------CCCCCEEEehh----HHHhhCCH------HHHHHHHHHHcCCCeEEEEEEECcc
Confidence 25799999731 11111111 5789999999999999987655544
No 182
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.56 E-value=5.4e-07 Score=102.31 Aligned_cols=111 Identities=15% Similarity=0.173 Sum_probs=82.2
Q ss_pred HHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEE--EEeecccCC--
Q 004354 55 DPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRW--RVMDMTSMQ-- 129 (759)
Q Consensus 55 ~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f--~~~D~~~~~-- 129 (759)
..+...+.. .++.+|||+|||+|..+..+++. +-..|+++|+|+.+++.+++++...+..+.+ .++|.....
T Consensus 228 ~~~~~~L~~---~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~ 304 (426)
T TIGR00563 228 QWVATWLAP---QNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQW 304 (426)
T ss_pred HHHHHHhCC---CCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccccc
Confidence 334444443 57889999999999999999875 3236999999999999999888655433333 666665432
Q ss_pred ---CcccEEEeCC----CC--h------h------------HHHHHHHHHHHhcccCcEEEEEEcC
Q 004354 130 ---GGLDALMEPE----LG--H------K------------LGNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 130 ---gtfD~Ii~~~----~~--~------~------------~~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
++||.|++.. .. + | ....+|.++.++|||||+++..|.+
T Consensus 305 ~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs 370 (426)
T TIGR00563 305 AENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCS 370 (426)
T ss_pred ccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 6799999632 11 0 0 1468999999999999999999875
No 183
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=2.2e-07 Score=93.82 Aligned_cols=114 Identities=18% Similarity=0.271 Sum_probs=86.7
Q ss_pred ccchHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCC
Q 004354 501 YLASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQ 577 (759)
Q Consensus 501 ~L~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~ 577 (759)
++..+|..+++..+.- .....+||.||.|.|..+..|.+... +|.+||+++...+.|++.| |+
T Consensus 54 tis~P~~vA~m~~~L~----------~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~-- 119 (209)
T COG2518 54 TISAPHMVARMLQLLE----------LKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGY-- 119 (209)
T ss_pred eecCcHHHHHHHHHhC----------CCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCC--
Confidence 5666776666544321 14558999999999999999998864 9999999999999999988 54
Q ss_pred CCCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChH
Q 004354 578 DKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEG 657 (759)
Q Consensus 578 ~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~ 657 (759)
.++.|+++||..-..+ ...||.|++-+-... .|..|+
T Consensus 120 -~nV~v~~gDG~~G~~~---------------------------------~aPyD~I~Vtaaa~~-------vP~~Ll-- 156 (209)
T COG2518 120 -ENVTVRHGDGSKGWPE---------------------------------EAPYDRIIVTAAAPE-------VPEALL-- 156 (209)
T ss_pred -CceEEEECCcccCCCC---------------------------------CCCcCEEEEeeccCC-------CCHHHH--
Confidence 3499999999875433 257999999654332 344444
Q ss_pred HHHHHHHHccCcCcEEEEEec
Q 004354 658 SFLLTVKDALSEQGLFIVNLV 678 (759)
Q Consensus 658 ~fl~~~~~~L~~~Gilv~N~~ 678 (759)
+.|++||.+++-+-
T Consensus 157 -------~QL~~gGrlv~PvG 170 (209)
T COG2518 157 -------DQLKPGGRLVIPVG 170 (209)
T ss_pred -------HhcccCCEEEEEEc
Confidence 45999999998885
No 184
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.56 E-value=1.7e-07 Score=92.09 Aligned_cols=77 Identities=19% Similarity=0.234 Sum_probs=64.4
Q ss_pred EEEeCCHHHHHHHHHHhccC----CCCcEEEEeecccCC---CcccEEEeCCCChhH--HHHHHHHHHHhcccCcEEEEE
Q 004354 95 TNVDFSKVVISDMLRRNVRD----RSDMRWRVMDMTSMQ---GGLDALMEPELGHKL--GNQYLSEVKRLLKSGGKFVCL 165 (759)
Q Consensus 95 tgIDiS~~~I~~a~~r~~~~----~~~i~f~~~D~~~~~---gtfD~Ii~~~~~~~~--~~~~l~ei~rvLkpGG~liii 165 (759)
+|+|+|+.|++.|+++.... ..+++|+++|+.+++ ++||+|++....++. ...++++++|+|||||.+++.
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~ 80 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSIL 80 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEE
Confidence 58999999999998765321 246999999999988 689999998755543 889999999999999999999
Q ss_pred EcCchh
Q 004354 166 TLAESH 171 (759)
Q Consensus 166 t~~~~~ 171 (759)
++..++
T Consensus 81 d~~~~~ 86 (160)
T PLN02232 81 DFNKSN 86 (160)
T ss_pred ECCCCC
Confidence 987653
No 185
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.55 E-value=3.2e-07 Score=94.31 Aligned_cols=101 Identities=17% Similarity=0.230 Sum_probs=76.5
Q ss_pred CCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
...+||.||.|.|.++..|.+..+ ..+|++||++|.+++.|++.+....-++++++.+|+.....
T Consensus 76 ~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~-------------- 141 (212)
T PRK13942 76 EGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYE-------------- 141 (212)
T ss_pred CcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC--------------
Confidence 457999999999999988888764 46999999999999999998732223579999999865321
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEec
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 678 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~ 678 (759)
....||+|+++.... +..+.+.+.|+|||.|++.+.
T Consensus 142 -------------------~~~~fD~I~~~~~~~----------------~~~~~l~~~LkpgG~lvi~~~ 177 (212)
T PRK13942 142 -------------------ENAPYDRIYVTAAGP----------------DIPKPLIEQLKDGGIMVIPVG 177 (212)
T ss_pred -------------------cCCCcCEEEECCCcc----------------cchHHHHHhhCCCcEEEEEEc
Confidence 125799999965322 122356678999999998763
No 186
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.55 E-value=3.1e-07 Score=94.94 Aligned_cols=112 Identities=18% Similarity=0.184 Sum_probs=90.7
Q ss_pred HHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCC-CeEEEEeCCHHHHHHHHHHhccCCC-CcEEEEeecccCC-----
Q 004354 57 LISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDRS-DMRWRVMDMTSMQ----- 129 (759)
Q Consensus 57 l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~-~~VtgIDiS~~~I~~a~~r~~~~~~-~i~f~~~D~~~~~----- 129 (759)
+..++.. .....+||||||.|.+...++.... .+++|||+....+..|.+++.+.+- |+.+++.|+....
T Consensus 40 ~~~~f~~---~~~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~ 116 (227)
T COG0220 40 WSALFGN---NNAPIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIP 116 (227)
T ss_pred HHHHhCC---CCCcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCC
Confidence 4455543 2235899999999999999998854 4799999999999999998877666 9999999998765
Q ss_pred -CcccEEEeCCCChhH----------HHHHHHHHHHhcccCcEEEEEEcCchh
Q 004354 130 -GGLDALMEPELGHKL----------GNQYLSEVKRLLKSGGKFVCLTLAESH 171 (759)
Q Consensus 130 -gtfD~Ii~~~~~~~~----------~~~~l~ei~rvLkpGG~liiit~~~~~ 171 (759)
+++|-|+.+...+|. ...+++.+.++|+|||.+.+.|=....
T Consensus 117 ~~sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y 169 (227)
T COG0220 117 DGSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEY 169 (227)
T ss_pred CCCeeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHH
Confidence 599999986544332 678999999999999999999965443
No 187
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.55 E-value=7.1e-07 Score=94.23 Aligned_cols=103 Identities=16% Similarity=0.183 Sum_probs=81.5
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
....+||.||+|+|.++..|...+|..+|++||+++.+++.|++.+ +++.++.+|+.++. .
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~-----~~~~~~~~d~~~~~---~----------- 90 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL-----PDCQFVEADIASWQ---P----------- 90 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC-----CCCeEEECchhccC---C-----------
Confidence 3457999999999999999998888889999999999999999885 35889999986542 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecC
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 679 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~ 679 (759)
..+||+|+... . ...+ + -...+++.+.+.|+|||.|++.+..
T Consensus 91 --------------------~~~fD~v~~~~--~--l~~~---~---d~~~~l~~~~~~LkpgG~~~~~~~~ 132 (258)
T PRK01683 91 --------------------PQALDLIFANA--S--LQWL---P---DHLELFPRLVSLLAPGGVLAVQMPD 132 (258)
T ss_pred --------------------CCCccEEEEcc--C--hhhC---C---CHHHHHHHHHHhcCCCcEEEEECCC
Confidence 24799999832 1 1111 1 1367999999999999999997643
No 188
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.54 E-value=9.4e-07 Score=95.90 Aligned_cols=147 Identities=14% Similarity=0.198 Sum_probs=98.0
Q ss_pred CeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC-CCCCeEEEEccHHHHHHhhcccCcccccccccc
Q 004354 531 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 609 (759)
Q Consensus 531 ~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~-~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~ 609 (759)
.+||.+|.|.|+++..+...+|..+|++||+++.++++|+++.... ..++++++.+|..+.+.
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~---------------- 198 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALP---------------- 198 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCC----------------
Confidence 6899999999999999999989999999999999999999987221 14679999999866431
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEcCC-CCC-CCCCC-----CcCCCCCC--------hHHHHHHHHHccCcCcEEE
Q 004354 610 NEITSNNTRSCNGNCTASNARVDILIIDVD-SPD-SSSGM-----TCPAADFV--------EGSFLLTVKDALSEQGLFI 674 (759)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~-s~d-~~~g~-----scPp~~f~--------~~~fl~~~~~~L~~~Gilv 674 (759)
..+||+|+.+.- .+. ....+ ..|...+. -..+++.+.+.|+|||.++
T Consensus 199 ------------------~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~ 260 (307)
T PRK11805 199 ------------------GRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLV 260 (307)
T ss_pred ------------------CCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEE
Confidence 146999999631 100 00000 11222221 2578899999999999999
Q ss_pred EEecCCChhHHHHHHHHHHHhcCceEEEeecCCccEEEEEecC
Q 004354 675 VNLVSRSQATKDMVISRMKMVFNHLFCLQLEEDVNLVLFGLSS 717 (759)
Q Consensus 675 ~N~~~~~~~~~~~v~~~l~~vF~~v~~~~~~~~~N~Vl~a~~~ 717 (759)
+.+... .. .+.+.+.. .. ...+....+.-.++++++.
T Consensus 261 ~E~g~~-~~---~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~ 297 (307)
T PRK11805 261 VEVGNS-RV---HLEEAYPD-VP-FTWLEFENGGDGVFLLTRE 297 (307)
T ss_pred EEECcC-HH---HHHHHHhh-CC-CEEEEecCCCceEEEEEHH
Confidence 987432 22 23333332 11 2234445566666766644
No 189
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.53 E-value=1.1e-06 Score=92.34 Aligned_cols=102 Identities=11% Similarity=0.167 Sum_probs=77.2
Q ss_pred CCCCeEEEEcccccHHHHHHHHh--CCCCcEEEEEcCHHHHHHHHhhcCC-CCCCCeEEEEccHHHHHHhhcccCccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHEC--MPFVGIEAVELDLTMLNLAEDYFGF-TQDKSLKVHITDGIKFVREMKSSSATDEM 604 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~--~p~~~i~~VEiDp~v~~vA~~~Fgl-~~~~rl~v~i~Da~~~l~~~~~~~~~~~~ 604 (759)
....+||.||+|+|.+...|... .|..++++||++|.|++.|++.+.- ....+++++.+|..++ .
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~----~-------- 122 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDI----A-------- 122 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhC----C--------
Confidence 34578999999999988877773 5788999999999999999998732 2245899999997553 1
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCC----hHHHHHHHHHccCcCcEEEEE
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFV----EGSFLLTVKDALSEQGLFIVN 676 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~----~~~fl~~~~~~L~~~Gilv~N 676 (759)
...+|+|++-. .-+++ -..+++.+.+.|+|||.|++-
T Consensus 123 -----------------------~~~~D~vv~~~------------~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~ 163 (247)
T PRK15451 123 -----------------------IENASMVVLNF------------TLQFLEPSERQALLDKIYQGLNPGGALVLS 163 (247)
T ss_pred -----------------------CCCCCEEehhh------------HHHhCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 13488877521 11122 257999999999999998874
No 190
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.53 E-value=5.5e-07 Score=91.54 Aligned_cols=101 Identities=10% Similarity=0.027 Sum_probs=76.8
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeecccCC----CcccEEEeCCCCh
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ----GGLDALMEPELGH 142 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~-~~i~f~~~D~~~~~----gtfD~Ii~~~~~~ 142 (759)
++.+|||+|||+|.++..++..+..+|+++|+++.+++.+++++...+ .+++++++|+.+.. +.||+|++++...
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy~ 132 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPFR 132 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCCC
Confidence 467999999999999987666677789999999999999888764432 46899999987632 4699999987532
Q ss_pred -hHHHHHHHHHHH--hcccCcEEEEEEcC
Q 004354 143 -KLGNQYLSEVKR--LLKSGGKFVCLTLA 168 (759)
Q Consensus 143 -~~~~~~l~ei~r--vLkpGG~liiit~~ 168 (759)
......++.+.. +|+|+|.+++....
T Consensus 133 ~g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 133 KGLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred CChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 234555565555 37888877776544
No 191
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.53 E-value=6.7e-07 Score=91.44 Aligned_cols=101 Identities=16% Similarity=0.208 Sum_probs=76.7
Q ss_pred CCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhcCC-CCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYFGF-TQDKSLKVHITDGIKFVREMKSSSATDEMSV 606 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~Fgl-~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~ 606 (759)
...+||.||.|.|.++..+.+..+ ..+|++||++|.+++.|++.+.- ...++++++.+|+.+.+..
T Consensus 72 ~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~------------ 139 (205)
T PRK13944 72 PGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK------------ 139 (205)
T ss_pred CCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc------------
Confidence 346899999999999988888764 45899999999999999987731 1235799999998754321
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEec
Q 004354 607 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 678 (759)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~ 678 (759)
...||+|+++.... .+...+.+.|+|||.|++.+.
T Consensus 140 ---------------------~~~fD~Ii~~~~~~----------------~~~~~l~~~L~~gG~lvi~~~ 174 (205)
T PRK13944 140 ---------------------HAPFDAIIVTAAAS----------------TIPSALVRQLKDGGVLVIPVE 174 (205)
T ss_pred ---------------------CCCccEEEEccCcc----------------hhhHHHHHhcCcCcEEEEEEc
Confidence 25799999964321 122467788999999998873
No 192
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.52 E-value=7.5e-07 Score=101.33 Aligned_cols=102 Identities=23% Similarity=0.268 Sum_probs=81.6
Q ss_pred CCCCeEEEECCCcchhHHHHHHh-C-CCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeecccCC-------CcccEEE
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ-------GGLDALM 136 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~-G-~~~VtgIDiS~~~I~~a~~r~~~~~-~~i~f~~~D~~~~~-------gtfD~Ii 136 (759)
.++.+|||+|||+|..+.++++. + -..|+++|+++.+++.+++++...+ .+++++++|+.+.. ++||.|+
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl 330 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRIL 330 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEEE
Confidence 57789999999999999999876 2 2369999999999999998876543 46899999998753 5799999
Q ss_pred eCCC----C--------hh------------HHHHHHHHHHHhcccCcEEEEEEcC
Q 004354 137 EPEL----G--------HK------------LGNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 137 ~~~~----~--------~~------------~~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
+... . .| ...+++.++.++|||||+++..|..
T Consensus 331 ~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcs 386 (434)
T PRK14901 331 LDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCT 386 (434)
T ss_pred EeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 7421 0 00 1468899999999999999988754
No 193
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.51 E-value=1.9e-06 Score=97.77 Aligned_cols=135 Identities=13% Similarity=0.186 Sum_probs=101.9
Q ss_pred CCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 604 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~ 604 (759)
...+||.+|.|.|..+.++...++ ..+|+++|+++..++.+++.+ |+ .+++++.+|+..+-...
T Consensus 237 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~---~~v~~~~~Da~~l~~~~--------- 304 (431)
T PRK14903 237 PGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKL---SSIEIKIADAERLTEYV--------- 304 (431)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCC---CeEEEEECchhhhhhhh---------
Confidence 446899999999999998988873 469999999999999999886 54 35899999998763221
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCC--------------ChHHHHHHHHHccCcC
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF--------------VEGSFLLTVKDALSEQ 670 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f--------------~~~~fl~~~~~~L~~~ 670 (759)
..+||.|++|+..+. .|+..-.+.. +..+.|..+.+.|+||
T Consensus 305 -----------------------~~~fD~Vl~DaPCsg--~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpG 359 (431)
T PRK14903 305 -----------------------QDTFDRILVDAPCTS--LGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKG 359 (431)
T ss_pred -----------------------hccCCEEEECCCCCC--CccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 256999999986542 2332211211 3577899999999999
Q ss_pred cEEEEEecCCChhHHHHHHHHHHHhcCceE
Q 004354 671 GLFIVNLVSRSQATKDMVISRMKMVFNHLF 700 (759)
Q Consensus 671 Gilv~N~~~~~~~~~~~v~~~l~~vF~~v~ 700 (759)
|.+++-..+...+.-+.++..+-+-++...
T Consensus 360 G~LvYsTCs~~~eEne~vv~~fl~~~~~~~ 389 (431)
T PRK14903 360 GILLYSTCTVTKEENTEVVKRFVYEQKDAE 389 (431)
T ss_pred CEEEEEECCCChhhCHHHHHHHHHhCCCcE
Confidence 999998877776666777877766666543
No 194
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.50 E-value=2.8e-06 Score=91.23 Aligned_cols=146 Identities=14% Similarity=0.239 Sum_probs=98.3
Q ss_pred CeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 531 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 531 ~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
.+||.+|.|+|+++..+...+|..+|++||+++..+++|++.. ++ .++++++.+|..+.+ .
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~--~~~v~~~~~d~~~~~---~----------- 179 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQL--EHRVEFIQSNLFEPL---A----------- 179 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEECchhccC---c-----------
Confidence 6899999999999999999989889999999999999999986 43 457999999975532 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCC--CCC-----CcCCCCC--------ChHHHHHHHHHccCcCcE
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSS--SGM-----TCPAADF--------VEGSFLLTVKDALSEQGL 672 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~--~g~-----scPp~~f--------~~~~fl~~~~~~L~~~Gi 672 (759)
..+||+|+.+..--... ..+ ..|...+ .-..++..+.+.|+|||+
T Consensus 180 --------------------~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~ 239 (284)
T TIGR00536 180 --------------------GQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGF 239 (284)
T ss_pred --------------------CCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCE
Confidence 13699999863110000 000 1122111 235688889999999999
Q ss_pred EEEEecCCChhHHHHHHHHHHH--hcCceEEEeecCCccEEEEEe
Q 004354 673 FIVNLVSRSQATKDMVISRMKM--VFNHLFCLQLEEDVNLVLFGL 715 (759)
Q Consensus 673 lv~N~~~~~~~~~~~v~~~l~~--vF~~v~~~~~~~~~N~Vl~a~ 715 (759)
|++.+..... ..+.+.+.. -|..+-.++--.+...++++.
T Consensus 240 l~~e~g~~q~---~~~~~~~~~~~~~~~~~~~~D~~g~~R~~~~~ 281 (284)
T TIGR00536 240 LVCEIGNWQQ---KSLKELLRIKFTWYDVENGRDLNGKERVVLGF 281 (284)
T ss_pred EEEEECccHH---HHHHHHHHhcCCCceeEEecCCCCCceEEEEE
Confidence 9998853322 234444442 355554444334456777764
No 195
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.49 E-value=1.9e-06 Score=95.32 Aligned_cols=131 Identities=13% Similarity=0.157 Sum_probs=99.2
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
...+.+|.||.|.|.....+....|...+.+||+++.+++.|.+......-++++++.+||..++...+
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~----------- 189 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLP----------- 189 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCC-----------
Confidence 345689999999999999999989999999999999999999888733223569999999998875443
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChhHHHH
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDM 687 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~~~~~ 687 (759)
+..+|.|++- -+|+...- +...++...|++.+++.|+|||.+.+.. .+..+...
T Consensus 190 --------------------~~s~D~I~ln--FPdPW~Kk--rHRRlv~~~fL~e~~RvLkpGG~l~l~T--D~~~y~~~ 243 (390)
T PRK14121 190 --------------------SNSVEKIFVH--FPVPWDKK--PHRRVISEDFLNEALRVLKPGGTLELRT--DSELYFEF 243 (390)
T ss_pred --------------------CCceeEEEEe--CCCCcccc--chhhccHHHHHHHHHHHcCCCcEEEEEE--ECHHHHHH
Confidence 3679999983 23432111 2245677899999999999999988654 55566555
Q ss_pred HHHHHHHh
Q 004354 688 VISRMKMV 695 (759)
Q Consensus 688 v~~~l~~v 695 (759)
+++.+.+.
T Consensus 244 ~~e~~~~~ 251 (390)
T PRK14121 244 SLELFLKL 251 (390)
T ss_pred HHHHHHhC
Confidence 56666544
No 196
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.49 E-value=5e-07 Score=91.31 Aligned_cols=133 Identities=18% Similarity=0.202 Sum_probs=102.4
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 604 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~ 604 (759)
....+||..-.|-|..+.-..+. ....|..||.||.|+++|+-+= ++ .+.+++++.||+.++++...
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~r-GA~~VitvEkdp~VLeLa~lNPwSr~l-~~~~i~iilGD~~e~V~~~~-------- 202 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALER-GAIHVITVEKDPNVLELAKLNPWSREL-FEIAIKIILGDAYEVVKDFD-------- 202 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHc-CCcEEEEEeeCCCeEEeeccCCCCccc-cccccEEecccHHHHHhcCC--------
Confidence 45679999999999887655555 2339999999999999997553 33 24589999999999999876
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCC----
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR---- 680 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~---- 680 (759)
+..||+||.|.--- + -+.++++.+|++.+.+.|+|||-+.=-+-.+
T Consensus 203 -----------------------D~sfDaIiHDPPRf--S-----~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ry 252 (287)
T COG2521 203 -----------------------DESFDAIIHDPPRF--S-----LAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRY 252 (287)
T ss_pred -----------------------ccccceEeeCCCcc--c-----hhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCccc
Confidence 47899999975221 1 2558999999999999999999887655333
Q ss_pred -ChhHHHHHHHHHHHh-cCceE
Q 004354 681 -SQATKDMVISRMKMV-FNHLF 700 (759)
Q Consensus 681 -~~~~~~~v~~~l~~v-F~~v~ 700 (759)
.......+.++|+++ |..|-
T Consensus 253 rG~d~~~gVa~RLr~vGF~~v~ 274 (287)
T COG2521 253 RGLDLPKGVAERLRRVGFEVVK 274 (287)
T ss_pred ccCChhHHHHHHHHhcCceeee
Confidence 345667889999888 54343
No 197
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.49 E-value=1.5e-06 Score=91.07 Aligned_cols=116 Identities=11% Similarity=0.173 Sum_probs=83.0
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 608 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~ 608 (759)
.+.+||.+|+|+|.++..+...+|...++++|+++.+++.|++.+....-++++++.+|+.+.+ .
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~---~------------ 151 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPL---P------------ 151 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccC---c------------
Confidence 4468999999999999999999888899999999999999998863222247999999976532 1
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCC-----------------hHHHHHHHHHccCcCc
Q 004354 609 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFV-----------------EGSFLLTVKDALSEQG 671 (759)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~-----------------~~~fl~~~~~~L~~~G 671 (759)
..+||+|+.+.--.... .+........ -..+++.+.+.|+|||
T Consensus 152 -------------------~~~fD~Vi~npPy~~~~-~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG 211 (251)
T TIGR03534 152 -------------------GGKFDLIVSNPPYIPEA-DIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGG 211 (251)
T ss_pred -------------------CCceeEEEECCCCCchh-hhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCC
Confidence 25799999854111000 0000001111 1468899999999999
Q ss_pred EEEEEecC
Q 004354 672 LFIVNLVS 679 (759)
Q Consensus 672 ilv~N~~~ 679 (759)
.+++....
T Consensus 212 ~~~~~~~~ 219 (251)
T TIGR03534 212 WLLLEIGY 219 (251)
T ss_pred EEEEEECc
Confidence 99998743
No 198
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=98.49 E-value=1.6e-06 Score=91.94 Aligned_cols=111 Identities=11% Similarity=0.065 Sum_probs=80.9
Q ss_pred CCCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHhhcCCC---CCCCeEEEEccHHHHHHhhcccCcccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFT---QDKSLKVHITDGIKFVREMKSSSATDE 603 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~Fgl~---~~~rl~v~i~Da~~~l~~~~~~~~~~~ 603 (759)
....+||.||+|+|.++..|...+ |..+|++||+++.|++.|++..... ..++++++.+|+.+. .
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~l----p------- 140 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDL----P------- 140 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccC----C-------
Confidence 345799999999999998888775 5569999999999999998775321 235799999997543 1
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCC
Q 004354 604 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS 681 (759)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~ 681 (759)
..+..||+|++-. ....+ | --..+|+.+.+.|+|||.|++--+...
T Consensus 141 ----------------------~~~~sfD~V~~~~----~l~~~--~----d~~~~l~ei~rvLkpGG~l~i~d~~~~ 186 (261)
T PLN02233 141 ----------------------FDDCYFDAITMGY----GLRNV--V----DRLKAMQEMYRVLKPGSRVSILDFNKS 186 (261)
T ss_pred ----------------------CCCCCEeEEEEec----ccccC--C----CHHHHHHHHHHHcCcCcEEEEEECCCC
Confidence 1236799998721 11111 1 126799999999999998876554443
No 199
>PRK04266 fibrillarin; Provisional
Probab=98.48 E-value=3.3e-06 Score=87.56 Aligned_cols=133 Identities=19% Similarity=0.187 Sum_probs=90.6
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 608 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~ 608 (759)
...+||.+|.|+|.++..|....+..+|.+||+++.|++.+.+...- .+++.++.+|+........
T Consensus 72 ~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~--~~nv~~i~~D~~~~~~~~~------------ 137 (226)
T PRK04266 72 KGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEE--RKNIIPILADARKPERYAH------------ 137 (226)
T ss_pred CCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhh--cCCcEEEECCCCCcchhhh------------
Confidence 44699999999999999999988756899999999998866555421 2568899999753100000
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCC-------
Q 004354 609 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS------- 681 (759)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~------- 681 (759)
-...||+|+.|+..++ ....+++.+++.|+|||.|++.+..+.
T Consensus 138 ------------------l~~~~D~i~~d~~~p~------------~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~ 187 (226)
T PRK04266 138 ------------------VVEKVDVIYQDVAQPN------------QAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDP 187 (226)
T ss_pred ------------------ccccCCEEEECCCChh------------HHHHHHHHHHHhcCCCcEEEEEEecccccCcCCH
Confidence 0145999999764321 013468999999999999998643221
Q ss_pred hhHHHHHHHHHHHh-cCceEEEeec
Q 004354 682 QATKDMVISRMKMV-FNHLFCLQLE 705 (759)
Q Consensus 682 ~~~~~~v~~~l~~v-F~~v~~~~~~ 705 (759)
....+..++.+.+. |..+......
T Consensus 188 ~~~~~~~~~~l~~aGF~~i~~~~l~ 212 (226)
T PRK04266 188 KEIFKEEIRKLEEGGFEILEVVDLE 212 (226)
T ss_pred HHHHHHHHHHHHHcCCeEEEEEcCC
Confidence 12234455667665 7766655543
No 200
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.48 E-value=2.8e-06 Score=94.26 Aligned_cols=128 Identities=13% Similarity=0.158 Sum_probs=91.2
Q ss_pred CeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcC---CCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 531 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG---FTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 531 ~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg---l~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
.+||.||+|.|.+...+....|..+|++||+++.+++.|++.+. ....++++++.+|+...+ .
T Consensus 230 ~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~---~----------- 295 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGV---E----------- 295 (378)
T ss_pred CeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccC---C-----------
Confidence 58999999999999999999999999999999999999998872 211247899999976432 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChhHHHH
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDM 687 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~~~~~ 687 (759)
..+||+|+.+. +-.. +.. .... ....++..+++.|+|||.|.+=. .+.-.
T Consensus 296 --------------------~~~fDlIlsNP--Pfh~-~~~-~~~~-ia~~l~~~a~~~LkpGG~L~iV~-nr~l~---- 345 (378)
T PRK15001 296 --------------------PFRFNAVLCNP--PFHQ-QHA-LTDN-VAWEMFHHARRCLKINGELYIVA-NRHLD---- 345 (378)
T ss_pred --------------------CCCEEEEEECc--Cccc-Ccc-CCHH-HHHHHHHHHHHhcccCCEEEEEE-ecCcC----
Confidence 24799999942 1110 000 0111 24678999999999999766542 23322
Q ss_pred HHHHHHHhcCceEEE
Q 004354 688 VISRMKMVFNHLFCL 702 (759)
Q Consensus 688 v~~~l~~vF~~v~~~ 702 (759)
....|++.|..+-.+
T Consensus 346 y~~~L~~~fg~~~~v 360 (378)
T PRK15001 346 YFHKLKKIFGNCTTI 360 (378)
T ss_pred HHHHHHHHcCCceEE
Confidence 346677789877553
No 201
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=98.47 E-value=2.8e-06 Score=84.75 Aligned_cols=147 Identities=16% Similarity=0.128 Sum_probs=94.3
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 608 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~ 608 (759)
.+.+||.+|.|.|.++..+....+ ++++||++|.+++.|++.+... ..+++++.+|..+..
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~~d~~~~~---------------- 79 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLN-NVGLDVVMTDLFKGV---------------- 79 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHc-CCceEEEEccccccc----------------
Confidence 446899999999999998888754 8999999999999999987532 235788888865421
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCC-----------CCCChHHHHHHHHHccCcCcEEEEEe
Q 004354 609 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPA-----------ADFVEGSFLLTVKDALSEQGLFIVNL 677 (759)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp-----------~~f~~~~fl~~~~~~L~~~Gilv~N~ 677 (759)
..+||+|+.+..--........++ ..-+-..|++.+.+.|+|||.+++..
T Consensus 80 -------------------~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~ 140 (179)
T TIGR00537 80 -------------------RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQ 140 (179)
T ss_pred -------------------CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEE
Confidence 147999998541100000000000 00113678999999999999988876
Q ss_pred cCCChhHHHHHHHHHHHhcCceEEEeecCCccEEEEEe
Q 004354 678 VSRSQATKDMVISRMKMVFNHLFCLQLEEDVNLVLFGL 715 (759)
Q Consensus 678 ~~~~~~~~~~v~~~l~~vF~~v~~~~~~~~~N~Vl~a~ 715 (759)
.+... ...++..|++.-=.+-.+...+-.++.+++.
T Consensus 141 ~~~~~--~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~ 176 (179)
T TIGR00537 141 SSLNG--EPDTFDKLDERGFRYEIVAERGLFFEELFAI 176 (179)
T ss_pred eccCC--hHHHHHHHHhCCCeEEEEEEeecCceEEEEE
Confidence 44332 2345666655432333333334456666654
No 202
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.47 E-value=2e-06 Score=90.74 Aligned_cols=126 Identities=18% Similarity=0.202 Sum_probs=88.4
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccc
Q 004354 530 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 609 (759)
Q Consensus 530 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~ 609 (759)
+.+||.+|.|.|.++..+....|..+|++||+||.+++.|++.+.. ..++++.+|..+++....
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~---~~~~~~~~D~~~~l~~~~------------- 150 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLAD---AGGTVHEGDLYDALPTAL------------- 150 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH---cCCEEEEeechhhcchhc-------------
Confidence 4589999999999999999888888999999999999999998743 125889999877653321
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEcCCCC-CCC-CCCCcCCC--------CC--------ChHHHHHHHHHccCcCc
Q 004354 610 NEITSNNTRSCNGNCTASNARVDILIIDVDSP-DSS-SGMTCPAA--------DF--------VEGSFLLTVKDALSEQG 671 (759)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~-d~~-~g~scPp~--------~f--------~~~~fl~~~~~~L~~~G 671 (759)
..+||+|+.|.--- ... ..+ +|. .+ +-..++..+.+.|+|||
T Consensus 151 ------------------~~~fDlVv~NPPy~~~~~~~~~--~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG 210 (251)
T TIGR03704 151 ------------------RGRVDILAANAPYVPTDAIALM--PPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGG 210 (251)
T ss_pred ------------------CCCEeEEEECCCCCCchhhhcC--CHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCC
Confidence 14699999976211 100 001 111 11 12578888899999999
Q ss_pred EEEEEecCCChhHHHHHHHHHHH
Q 004354 672 LFIVNLVSRSQATKDMVISRMKM 694 (759)
Q Consensus 672 ilv~N~~~~~~~~~~~v~~~l~~ 694 (759)
.+++=.... ....+...|++
T Consensus 211 ~l~l~~~~~---~~~~v~~~l~~ 230 (251)
T TIGR03704 211 HLLVETSER---QAPLAVEAFAR 230 (251)
T ss_pred EEEEEECcc---hHHHHHHHHHH
Confidence 999765322 23456666655
No 203
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.47 E-value=1.7e-06 Score=89.39 Aligned_cols=118 Identities=19% Similarity=0.184 Sum_probs=94.4
Q ss_pred hHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh-CC-CeEEEEeCCHHHHHHHHHHhccC-CC-CcEEEEeecccC
Q 004354 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GF-HGITNVDFSKVVISDMLRRNVRD-RS-DMRWRVMDMTSM 128 (759)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~-G~-~~VtgIDiS~~~I~~a~~r~~~~-~~-~i~f~~~D~~~~ 128 (759)
-...+..++.. .++.+|||.|.|+|.++.+|+.. |. .+|+..|+-+..++.|++++... .. ++++...|+.+.
T Consensus 82 D~~~I~~~~gi---~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~ 158 (256)
T COG2519 82 DAGYIVARLGI---SPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREG 158 (256)
T ss_pred CHHHHHHHcCC---CCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccc
Confidence 34456666654 78999999999999999999864 33 47999999999999999988652 23 388899999887
Q ss_pred C--CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEEcCchhhhhhh
Q 004354 129 Q--GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLL 176 (759)
Q Consensus 129 ~--gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit~~~~~~~~~l 176 (759)
. ..||+|+..-.. +.++++.+.++|+|||.+++.+..-+.+.+.+
T Consensus 159 ~~~~~vDav~LDmp~---PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~ 205 (256)
T COG2519 159 IDEEDVDAVFLDLPD---PWNVLEHVSDALKPGGVVVVYSPTVEQVEKTV 205 (256)
T ss_pred ccccccCEEEEcCCC---hHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHH
Confidence 6 789999996544 46789999999999999999887655544443
No 204
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.47 E-value=3.5e-06 Score=88.01 Aligned_cols=105 Identities=12% Similarity=0.249 Sum_probs=77.2
Q ss_pred CCCeEEEEcccccHHHHHHHHhC--CCCcEEEEEcCHHHHHHHHhhcC-CCCCCCeEEEEccHHHHHHhhcccCcccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECM--PFVGIEAVELDLTMLNLAEDYFG-FTQDKSLKVHITDGIKFVREMKSSSATDEMS 605 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~--p~~~i~~VEiDp~v~~vA~~~Fg-l~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~ 605 (759)
...+||.||+|+|.+...+...+ |..++++||+++.|++.|++.+. .....+++++.+|..++ .
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~----~--------- 119 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHV----E--------- 119 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhC----C---------
Confidence 45689999999999988888764 67899999999999999999863 22346799999998654 1
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEE
Q 004354 606 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 676 (759)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N 676 (759)
...+|+|++.. ...- +++.. -..+|+.+.+.|+|||.|++-
T Consensus 120 ----------------------~~~~d~v~~~~----~l~~--~~~~~--~~~~l~~i~~~LkpgG~l~i~ 160 (239)
T TIGR00740 120 ----------------------IKNASMVILNF----TLQF--LPPED--RIALLTKIYEGLNPNGVLVLS 160 (239)
T ss_pred ----------------------CCCCCEEeeec----chhh--CCHHH--HHHHHHHHHHhcCCCeEEEEe
Confidence 13478776511 0000 01111 257999999999999988875
No 205
>PRK03612 spermidine synthase; Provisional
Probab=98.46 E-value=5e-07 Score=104.93 Aligned_cols=99 Identities=17% Similarity=0.145 Sum_probs=79.5
Q ss_pred CCCeEEEECCCcchhHHHHHHhCC-CeEEEEeCCHHHHHHHHHH--hc------cCCCCcEEEEeecccCC----CcccE
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRR--NV------RDRSDMRWRVMDMTSMQ----GGLDA 134 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~-~~VtgIDiS~~~I~~a~~r--~~------~~~~~i~f~~~D~~~~~----gtfD~ 134 (759)
++.+|||+|||+|..+..+++.+. .+|+++|+++.+++.++++ .. -..++++++..|..+.. ++||+
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDv 376 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDV 376 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCE
Confidence 467999999999999999988754 6899999999999999873 21 12478999999987743 78999
Q ss_pred EEeCCCChh------H-HHHHHHHHHHhcccCcEEEEEE
Q 004354 135 LMEPELGHK------L-GNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 135 Ii~~~~~~~------~-~~~~l~ei~rvLkpGG~liiit 166 (759)
|+++...+. . ...+++.+++.|+|||.+++.+
T Consensus 377 Ii~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 377 IIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred EEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 999653221 1 4578999999999999988765
No 206
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.46 E-value=9e-07 Score=96.39 Aligned_cols=108 Identities=16% Similarity=0.195 Sum_probs=81.4
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC-CCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~-~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
...+||.||+|+|.+...|... +.+|++||+++.+++.|++++... ...++.++.+|+.++...
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~--g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~------------- 195 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM--GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADE------------- 195 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhc-------------
Confidence 3458999999999998888753 569999999999999999987542 235799999998665211
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCC
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS 681 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~ 681 (759)
+.+||+|+. .+...-+.. -..||+.+++.|+|||.|++..+.+.
T Consensus 196 --------------------~~~FD~Vi~----~~vLeHv~d------~~~~L~~l~r~LkPGG~liist~nr~ 239 (322)
T PLN02396 196 --------------------GRKFDAVLS----LEVIEHVAN------PAEFCKSLSALTIPNGATVLSTINRT 239 (322)
T ss_pred --------------------cCCCCEEEE----hhHHHhcCC------HHHHHHHHHHHcCCCcEEEEEECCcC
Confidence 357999997 111111111 26799999999999999998876554
No 207
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.46 E-value=1.1e-06 Score=100.03 Aligned_cols=122 Identities=9% Similarity=0.077 Sum_probs=83.8
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccC-CCCcEEEEeecccCC-------CcccEEEeC
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD-RSDMRWRVMDMTSMQ-------GGLDALMEP 138 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~-~~~i~f~~~D~~~~~-------gtfD~Ii~~ 138 (759)
.++.+|||+|||+|.++..|++.+ ..|+|+|+++.+++.|++++... ..+++|+++|+.+.. ++||+|+.+
T Consensus 291 ~~~~~vLDl~cG~G~~sl~la~~~-~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~d 369 (431)
T TIGR00479 291 QGEELVVDAYCGVGTFTLPLAKQA-KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLD 369 (431)
T ss_pred CCCCEEEEcCCCcCHHHHHHHHhC-CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEEC
Confidence 456799999999999999998874 56999999999999999877443 357999999986531 469999987
Q ss_pred CCChhHHHHHHHHHHHhcccCcEEEEEEcCchhhhhhhccccCCCceEEEEEe
Q 004354 139 ELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAI 191 (759)
Q Consensus 139 ~~~~~~~~~~l~ei~rvLkpGG~liiit~~~~~~~~~l~~~~~~~w~v~~~~~ 191 (759)
.........+++.+.+ ++|++. +.++..+....+.+......+|.+.....
T Consensus 370 PPr~G~~~~~l~~l~~-l~~~~i-vyvsc~p~tlard~~~l~~~gy~~~~~~~ 420 (431)
T TIGR00479 370 PPRKGCAAEVLRTIIE-LKPERI-VYVSCNPATLARDLEFLCKEGYGITWVQP 420 (431)
T ss_pred cCCCCCCHHHHHHHHh-cCCCEE-EEEcCCHHHHHHHHHHHHHCCeeEEEEEE
Confidence 6322223555665554 788764 45555543333332222234676655444
No 208
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.45 E-value=2.4e-06 Score=97.52 Aligned_cols=132 Identities=14% Similarity=0.199 Sum_probs=95.0
Q ss_pred CCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 604 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~ 604 (759)
...+||.+|.|.|..+..+.... +..+|++||+++.+++.+++.+ |+ .+++++.+|+.++.....
T Consensus 250 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~---~~v~~~~~D~~~~~~~~~-------- 318 (444)
T PRK14902 250 GGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGL---TNIETKALDARKVHEKFA-------- 318 (444)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC---CeEEEEeCCcccccchhc--------
Confidence 34689999999999998888876 5679999999999999999876 54 249999999877643221
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCC-CcCCCC-C------------ChHHHHHHHHHccCcC
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGM-TCPAAD-F------------VEGSFLLTVKDALSEQ 670 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~-scPp~~-f------------~~~~fl~~~~~~L~~~ 670 (759)
..||+|++|+..+. .|+ .--|.. + +..++|..+.+.|+||
T Consensus 319 ------------------------~~fD~Vl~D~Pcsg--~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpG 372 (444)
T PRK14902 319 ------------------------EKFDKILVDAPCSG--LGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKG 372 (444)
T ss_pred ------------------------ccCCEEEEcCCCCC--CeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 46999999985331 121 111111 1 2357899999999999
Q ss_pred cEEEEEecCCChhHHHHHHHHHHHhcC
Q 004354 671 GLFIVNLVSRSQATKDMVISRMKMVFN 697 (759)
Q Consensus 671 Gilv~N~~~~~~~~~~~v~~~l~~vF~ 697 (759)
|.|++...+-..+..+.++..+.+-.+
T Consensus 373 G~lvystcs~~~~Ene~vv~~~l~~~~ 399 (444)
T PRK14902 373 GILVYSTCTIEKEENEEVIEAFLEEHP 399 (444)
T ss_pred CEEEEEcCCCChhhhHHHHHHHHHhCC
Confidence 999988766555545556666555443
No 209
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.45 E-value=9.2e-07 Score=94.39 Aligned_cols=118 Identities=15% Similarity=0.130 Sum_probs=89.9
Q ss_pred cccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC---CCcEEEE
Q 004354 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR---SDMRWRV 122 (759)
Q Consensus 46 W~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~---~~i~f~~ 122 (759)
||.+....+..+..+. .+.+|||+-|=||.++.+.+..|...|++||.|..+++.+++++..++ ..++|++
T Consensus 107 lFlDqR~nR~~v~~~~------~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~ 180 (286)
T PF10672_consen 107 LFLDQRENRKWVRKYA------KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQ 180 (286)
T ss_dssp S-GGGHHHHHHHHHHC------TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEE
T ss_pred EcHHHHhhHHHHHHHc------CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEe
Confidence 6777777777777775 467999999999999999888898889999999999999999875443 4689999
Q ss_pred eecccCC------CcccEEEeCCCC--------hhHHHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 123 MDMTSMQ------GGLDALMEPELG--------HKLGNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 123 ~D~~~~~------gtfD~Ii~~~~~--------~~~~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
+|+.+.- ++||+|++.+.. ......++..+.++|+|||.+++.+.+.
T Consensus 181 ~Dvf~~l~~~~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~ 241 (286)
T PF10672_consen 181 GDVFKFLKRLKKGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSH 241 (286)
T ss_dssp S-HHHHHHHHHHTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--T
T ss_pred cCHHHHHHHHhcCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence 9997743 799999996521 1236778899999999999998887653
No 210
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.44 E-value=2.4e-06 Score=98.84 Aligned_cols=151 Identities=14% Similarity=0.156 Sum_probs=101.0
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCcccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMS 605 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~ 605 (759)
.+.+||.||.|.|+++..+...+|..+|++||++|.++++|++.. ++ +++++++.+|..+.+ .
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l--~~~v~~~~~D~~~~~---~--------- 203 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEV--TDRIQIIHSNWFENI---E--------- 203 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCC--ccceeeeecchhhhC---c---------
Confidence 346899999999999999988889899999999999999999886 44 468999999976542 1
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCC--CCC------CcCCCCCC--------hHHHHHHHHHccCc
Q 004354 606 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSS--SGM------TCPAADFV--------EGSFLLTVKDALSE 669 (759)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~--~g~------scPp~~f~--------~~~fl~~~~~~L~~ 669 (759)
..+||+|+.+.---... ..+ .-|...+. -..+++.+.+.|+|
T Consensus 204 ----------------------~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~ 261 (506)
T PRK01544 204 ----------------------KQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKP 261 (506)
T ss_pred ----------------------CCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccC
Confidence 24699999854100000 001 01212222 23467788899999
Q ss_pred CcEEEEEecCCChhHHHHHHHHHHH-hcCceEEEeecCCccEEEEEecCC
Q 004354 670 QGLFIVNLVSRSQATKDMVISRMKM-VFNHLFCLQLEEDVNLVLFGLSSE 718 (759)
Q Consensus 670 ~Gilv~N~~~~~~~~~~~v~~~l~~-vF~~v~~~~~~~~~N~Vl~a~~~~ 718 (759)
||.|++-+. .+ ..+.+.+.+.+ -|..+..++--.+...++++....
T Consensus 262 gG~l~lEig-~~--q~~~v~~~~~~~g~~~~~~~~D~~g~~R~v~~~~~~ 308 (506)
T PRK01544 262 NGKIILEIG-FK--QEEAVTQIFLDHGYNIESVYKDLQGHSRVILISPIN 308 (506)
T ss_pred CCEEEEEEC-Cc--hHHHHHHHHHhcCCCceEEEecCCCCceEEEecccc
Confidence 999998653 22 22344555544 355444444344567788887765
No 211
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.43 E-value=5.3e-07 Score=78.90 Aligned_cols=94 Identities=15% Similarity=0.234 Sum_probs=70.7
Q ss_pred EEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccccccc
Q 004354 534 VVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEIT 613 (759)
Q Consensus 534 LviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~~~~ 613 (759)
|.||.|.|..+..|... +..+++++|+++.+++.|++.+. ..++.++.+|+.++ .
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~---~~~~~~~~~d~~~l--~------------------- 55 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLK---NEGVSFRQGDAEDL--P------------------- 55 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTT---TSTEEEEESBTTSS--S-------------------
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhccc---ccCchheeehHHhC--c-------------------
Confidence 78999999999999998 78899999999999999999985 35567888885544 1
Q ss_pred cCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCC-ChHHHHHHHHHccCcCcEEEE
Q 004354 614 SNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF-VEGSFLLTVKDALSEQGLFIV 675 (759)
Q Consensus 614 ~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f-~~~~fl~~~~~~L~~~Gilv~ 675 (759)
..+..||+|+.- .. . ..+ --..+++.+++.|+|||.+++
T Consensus 56 ------------~~~~sfD~v~~~--~~--~-------~~~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 56 ------------FPDNSFDVVFSN--SV--L-------HHLEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp ------------S-TT-EEEEEEE--SH--G-------GGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred ------------cccccccccccc--cc--e-------eeccCHHHHHHHHHHHcCcCeEEeC
Confidence 124789999871 11 0 111 236799999999999999985
No 212
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.43 E-value=2e-06 Score=95.91 Aligned_cols=120 Identities=8% Similarity=0.109 Sum_probs=83.7
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeecccCC----CcccEEEeCCCCh
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ----GGLDALMEPELGH 142 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~-~~i~f~~~D~~~~~----gtfD~Ii~~~~~~ 142 (759)
++.+|||+|||+|.++..++..+ ..|+|+|+++.+++.+++++.... .+++|.++|+.+.. +.||+|++++.-.
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~ 311 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPRR 311 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCCC
Confidence 45789999999999999999876 469999999999999988774433 47999999987643 5699999976432
Q ss_pred hHHHHHHHHHHHhcccCcEEEEEEcCchhhhhhhccccCCCceEEEEEeC
Q 004354 143 KLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAIP 192 (759)
Q Consensus 143 ~~~~~~l~ei~rvLkpGG~liiit~~~~~~~~~l~~~~~~~w~v~~~~~~ 192 (759)
.....+++.+.+ ++|++.++ ++..+..+.+.+-.. .+|.+......
T Consensus 312 G~~~~~l~~l~~-~~p~~ivy-vsc~p~TlaRDl~~L--~gy~l~~~~~~ 357 (374)
T TIGR02085 312 GIGKELCDYLSQ-MAPKFILY-SSCNAQTMAKDIAEL--SGYQIERVQLF 357 (374)
T ss_pred CCcHHHHHHHHh-cCCCeEEE-EEeCHHHHHHHHHHh--cCceEEEEEEe
Confidence 224455555543 68876544 444444333333222 46777665543
No 213
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.43 E-value=6.9e-06 Score=91.54 Aligned_cols=150 Identities=14% Similarity=0.118 Sum_probs=97.4
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccc
Q 004354 530 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 609 (759)
Q Consensus 530 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~ 609 (759)
..+||.||.|.|.++..+....|..++++||++|.++++|++..... ..+++++.+|..+.. ..
T Consensus 252 ~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~-g~rV~fi~gDl~e~~--l~------------- 315 (423)
T PRK14966 252 NGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADL-GARVEFAHGSWFDTD--MP------------- 315 (423)
T ss_pred CCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-CCcEEEEEcchhccc--cc-------------
Confidence 35899999999999999988888889999999999999999987321 247999999965431 00
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEcCCCC-CCCCCCC------cCCCCCC--------hHHHHHHHHHccCcCcEEE
Q 004354 610 NEITSNNTRSCNGNCTASNARVDILIIDVDSP-DSSSGMT------CPAADFV--------EGSFLLTVKDALSEQGLFI 674 (759)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~-d~~~g~s------cPp~~f~--------~~~fl~~~~~~L~~~Gilv 674 (759)
...+||+|+.+.--- .....+. -|...+. -..++..+.+.|+|||.++
T Consensus 316 -----------------~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~li 378 (423)
T PRK14966 316 -----------------SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLL 378 (423)
T ss_pred -----------------cCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEE
Confidence 024699999965210 0000000 1111121 2367777788999999988
Q ss_pred EEecCCChhHHHHHHHHHHHh-cCceEEEeecCCccEEEEEe
Q 004354 675 VNLVSRSQATKDMVISRMKMV-FNHLFCLQLEEDVNLVLFGL 715 (759)
Q Consensus 675 ~N~~~~~~~~~~~v~~~l~~v-F~~v~~~~~~~~~N~Vl~a~ 715 (759)
+=+.. ...+.+.+.+.+. |..+-..+--.+..+++++.
T Consensus 379 lEiG~---~Q~e~V~~ll~~~Gf~~v~v~kDl~G~dR~v~~~ 417 (423)
T PRK14966 379 LEHGF---DQGAAVRGVLAENGFSGVETLPDLAGLDRVTLGK 417 (423)
T ss_pred EEECc---cHHHHHHHHHHHCCCcEEEEEEcCCCCcEEEEEE
Confidence 65522 2234455555553 55554444334556777764
No 214
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.43 E-value=3.9e-06 Score=86.08 Aligned_cols=143 Identities=14% Similarity=0.189 Sum_probs=96.0
Q ss_pred CCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHH--HHhhcccCcccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF--VREMKSSSATDEMS 605 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~--l~~~~~~~~~~~~~ 605 (759)
...+||.||.|+|..+..+.+..+ ...|++||++|. ...+.++++.+|..+. +.+...
T Consensus 51 ~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~~~~~v~~i~~D~~~~~~~~~i~~-------- 111 (209)
T PRK11188 51 PGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------DPIVGVDFLQGDFRDELVLKALLE-------- 111 (209)
T ss_pred CCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------cCCCCcEEEecCCCChHHHHHHHH--------
Confidence 346899999999999998888864 469999999992 1124589999997663 222210
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCC-----ChHHHHHHHHHccCcCcEEEEEecCC
Q 004354 606 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF-----VEGSFLLTVKDALSEQGLFIVNLVSR 680 (759)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f-----~~~~fl~~~~~~L~~~Gilv~N~~~~ 680 (759)
......||+|+.|....- .|. |.... +...+|+.+.+.|+|||.|++-++..
T Consensus 112 -------------------~~~~~~~D~V~S~~~~~~--~g~--~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~ 168 (209)
T PRK11188 112 -------------------RVGDSKVQVVMSDMAPNM--SGT--PAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG 168 (209)
T ss_pred -------------------HhCCCCCCEEecCCCCcc--CCC--hHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC
Confidence 011367999999763221 111 11010 12568999999999999999977544
Q ss_pred ChhHHHHHHHHHHHhcCceEEEeec----CCccEEEEEe
Q 004354 681 SQATKDMVISRMKMVFNHLFCLQLE----EDVNLVLFGL 715 (759)
Q Consensus 681 ~~~~~~~v~~~l~~vF~~v~~~~~~----~~~N~Vl~a~ 715 (759)
.. ...++..++..|..+..++.. +.....++|.
T Consensus 169 ~~--~~~~l~~l~~~f~~v~~~Kp~ssr~~s~e~~~~~~ 205 (209)
T PRK11188 169 EG--FDEYLREIRSLFTKVKVRKPDSSRARSREVYIVAT 205 (209)
T ss_pred cC--HHHHHHHHHhCceEEEEECCccccccCceeEEEee
Confidence 32 235688999999998888743 2334445554
No 215
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=98.42 E-value=1.8e-06 Score=89.65 Aligned_cols=109 Identities=15% Similarity=0.192 Sum_probs=84.6
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 608 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~ 608 (759)
.+.+||.||+|+|-++..+.+..+..+|+++|+++.|+++|++...=..-..++++++||.+.-
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LP---------------- 114 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLP---------------- 114 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCC----------------
Confidence 5689999999999999999999888899999999999999999973211122999999987751
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCC
Q 004354 609 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 680 (759)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~ 680 (759)
.++..||++.+.- ....++- -+..|+.+.+.|+|||.+++.=...
T Consensus 115 -----------------f~D~sFD~vt~~f----glrnv~d------~~~aL~E~~RVlKpgG~~~vle~~~ 159 (238)
T COG2226 115 -----------------FPDNSFDAVTISF----GLRNVTD------IDKALKEMYRVLKPGGRLLVLEFSK 159 (238)
T ss_pred -----------------CCCCccCEEEeee----hhhcCCC------HHHHHHHHHHhhcCCeEEEEEEcCC
Confidence 2357899999821 1111211 2679999999999999888765444
No 216
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.42 E-value=2.1e-06 Score=89.81 Aligned_cols=124 Identities=19% Similarity=0.257 Sum_probs=90.5
Q ss_pred CCCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHH--HHHhhcccCcc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIK--FVREMKSSSAT 601 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~--~l~~~~~~~~~ 601 (759)
....+||..|.|.|+|+.+|.+.. |..+|...|+.++.++.|++.| |+ ++++++++.|..+ |..+
T Consensus 39 ~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl--~~~v~~~~~Dv~~~g~~~~------- 109 (247)
T PF08704_consen 39 RPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGL--DDNVTVHHRDVCEEGFDEE------- 109 (247)
T ss_dssp -TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTC--CTTEEEEES-GGCG--STT-------
T ss_pred CCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCC--CCCceeEecceeccccccc-------
Confidence 445799999999999999888654 7779999999999999999988 65 5689999999652 2001
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHcc-CcCcEEEEEecCC
Q 004354 602 DEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDAL-SEQGLFIVNLVSR 680 (759)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L-~~~Gilv~N~~~~ 680 (759)
-...+|+||+|+-++ .+.+..+++.| ++||.+++=+ +
T Consensus 110 -------------------------~~~~~DavfLDlp~P---------------w~~i~~~~~~L~~~gG~i~~fs--P 147 (247)
T PF08704_consen 110 -------------------------LESDFDAVFLDLPDP---------------WEAIPHAKRALKKPGGRICCFS--P 147 (247)
T ss_dssp --------------------------TTSEEEEEEESSSG---------------GGGHHHHHHHE-EEEEEEEEEE--S
T ss_pred -------------------------ccCcccEEEEeCCCH---------------HHHHHHHHHHHhcCCceEEEEC--C
Confidence 125799999999554 56889999999 8999998665 4
Q ss_pred ChhHHHHHHHHHHH-hcCceEEE
Q 004354 681 SQATKDMVISRMKM-VFNHLFCL 702 (759)
Q Consensus 681 ~~~~~~~v~~~l~~-vF~~v~~~ 702 (759)
+-+.....+..|++ -|..+-.+
T Consensus 148 ~ieQv~~~~~~L~~~gf~~i~~~ 170 (247)
T PF08704_consen 148 CIEQVQKTVEALREHGFTDIETV 170 (247)
T ss_dssp SHHHHHHHHHHHHHTTEEEEEEE
T ss_pred CHHHHHHHHHHHHHCCCeeeEEE
Confidence 44444556777766 46655443
No 217
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.42 E-value=2e-06 Score=88.98 Aligned_cols=106 Identities=17% Similarity=0.219 Sum_probs=82.6
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
..+.+||.||.|.|.++..+....|..+++++|+++.+++.|++.+. ++++++.+|..+.. .
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~----~~~~~~~~d~~~~~--~------------ 94 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS----ENVQFICGDAEKLP--L------------ 94 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC----CCCeEEecchhhCC--C------------
Confidence 34578999999999999999999998899999999999999999875 37889999875431 0
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCC
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 680 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~ 680 (759)
....||+|+....-. .. + -...+|..+++.|+|||.|++.....
T Consensus 95 -------------------~~~~fD~vi~~~~l~----~~---~---~~~~~l~~~~~~L~~~G~l~~~~~~~ 138 (240)
T TIGR02072 95 -------------------EDSSFDLIVSNLALQ----WC---D---DLSQALSELARVLKPGGLLAFSTFGP 138 (240)
T ss_pred -------------------CCCceeEEEEhhhhh----hc---c---CHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 135799999842110 00 0 12579999999999999999876544
No 218
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.42 E-value=3.5e-06 Score=91.04 Aligned_cols=113 Identities=19% Similarity=0.230 Sum_probs=89.4
Q ss_pred hhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEe-ecccC
Q 004354 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVM-DMTSM 128 (759)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~-~~i~f~~~-D~~~~ 128 (759)
+.+...+..+... .++..|||.=||||.+.....-.|.. ++|+|++..|++-++.++..-+ ....+... |++++
T Consensus 183 P~lAR~mVNLa~v---~~G~~vlDPFcGTGgiLiEagl~G~~-viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~l 258 (347)
T COG1041 183 PRLARAMVNLARV---KRGELVLDPFCGTGGILIEAGLMGAR-VIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNL 258 (347)
T ss_pred HHHHHHHHHHhcc---ccCCEeecCcCCccHHHHhhhhcCce-EeecchHHHHHhhhhhhhhhhCcCceeEEEecccccC
Confidence 4555555555544 67889999999999999988777885 9999999999999988875543 34545555 99988
Q ss_pred C---CcccEEEeCCC-----------ChhHHHHHHHHHHHhcccCcEEEEEEc
Q 004354 129 Q---GGLDALMEPEL-----------GHKLGNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 129 ~---gtfD~Ii~~~~-----------~~~~~~~~l~ei~rvLkpGG~liiit~ 167 (759)
+ .++|+|++.+. ......++|+.++++|++||++++...
T Consensus 259 pl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 259 PLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred CCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 8 45999999651 123388999999999999999999886
No 219
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.39 E-value=5.6e-06 Score=85.70 Aligned_cols=116 Identities=22% Similarity=0.186 Sum_probs=80.2
Q ss_pred hhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhccC--CCCcEEEEeecccC
Q 004354 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTSM 128 (759)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~~--~~~i~f~~~D~~~~ 128 (759)
++...+.+.+....-..+..|||+|||+|..+..++.. +-..|++||.|+.++..|.++.... ...+..++.+++..
T Consensus 132 E~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d 211 (328)
T KOG2904|consen 132 EWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESD 211 (328)
T ss_pred HHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccc
Confidence 33344444443311123457999999999999998865 3335999999999999998876442 23455554444332
Q ss_pred C--------CcccEEEeCCC----------------------------ChhHHHHHHHHHHHhcccCcEEEEEEc
Q 004354 129 Q--------GGLDALMEPEL----------------------------GHKLGNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 129 ~--------gtfD~Ii~~~~----------------------------~~~~~~~~l~ei~rvLkpGG~liiit~ 167 (759)
. +++|+++|+.. .......++.-+.|.|+|||.+.+..-
T Consensus 212 ~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 212 ASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred cccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 1 89999999640 112267788889999999999888765
No 220
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.39 E-value=3.3e-06 Score=95.92 Aligned_cols=136 Identities=13% Similarity=0.129 Sum_probs=97.1
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCcccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMS 605 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~ 605 (759)
...+||.+|.|.|+.+..+...++..+|+++|+++.+++.+++.+ |+. .++.++.+|+.......
T Consensus 238 ~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~--~~v~~~~~d~~~~~~~~---------- 305 (426)
T TIGR00563 238 NEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLT--IKAETKDGDGRGPSQWA---------- 305 (426)
T ss_pred CCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEeccccccccccc----------
Confidence 446899999999999999998887679999999999999999886 552 23444666654321100
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCC-CcCCCC-C------------ChHHHHHHHHHccCcCc
Q 004354 606 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGM-TCPAAD-F------------VEGSFLLTVKDALSEQG 671 (759)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~-scPp~~-f------------~~~~fl~~~~~~L~~~G 671 (759)
....||.|++|+-.+.. |+ .--|.. . +..++|..+.+.|+|||
T Consensus 306 ---------------------~~~~fD~VllDaPcSg~--G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG 362 (426)
T TIGR00563 306 ---------------------ENEQFDRILLDAPCSAT--GVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGG 362 (426)
T ss_pred ---------------------cccccCEEEEcCCCCCC--cccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 12579999999854421 22 111211 1 14679999999999999
Q ss_pred EEEEEecCCChhHHHHHHHHHHHhcCce
Q 004354 672 LFIVNLVSRSQATKDMVISRMKMVFNHL 699 (759)
Q Consensus 672 ilv~N~~~~~~~~~~~v~~~l~~vF~~v 699 (759)
.|++...+-..+.-+.++..+.+-++..
T Consensus 363 ~lvystcs~~~~Ene~~v~~~l~~~~~~ 390 (426)
T TIGR00563 363 TLVYATCSVLPEENSEQIKAFLQEHPDF 390 (426)
T ss_pred EEEEEeCCCChhhCHHHHHHHHHhCCCC
Confidence 9999987777666667787777766653
No 221
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.39 E-value=4e-06 Score=88.50 Aligned_cols=119 Identities=11% Similarity=0.083 Sum_probs=82.3
Q ss_pred hhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC-C
Q 004354 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-G 130 (759)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~-g 130 (759)
.+...+.+.+.. .++.+|||+|||+|.++..|++.+. .|+++|+++.+++.++++... .++++++++|+.+.+ .
T Consensus 16 ~i~~~i~~~~~~---~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~-~~~v~v~~~D~~~~~~~ 90 (253)
T TIGR00755 16 SVIQKIVEAANV---LEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSL-YERLEVIEGDALKVDLP 90 (253)
T ss_pred HHHHHHHHhcCC---CCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCc-CCcEEEEECchhcCChh
Confidence 344445554443 5678999999999999999999865 599999999999998877633 568999999999887 5
Q ss_pred ccc---EEEeCCCChhHHHHHHHHHHHhcccCcEEEEEEcCchhhhhhhccc
Q 004354 131 GLD---ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPK 179 (759)
Q Consensus 131 tfD---~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit~~~~~~~~~l~~~ 179 (759)
.+| .|+++-. ......++..+.. .+|+..+++.+ |..+..++...
T Consensus 91 ~~d~~~~vvsNlP-y~i~~~il~~ll~--~~~~~~~~~~~-q~e~a~Rl~a~ 138 (253)
T TIGR00755 91 DFPKQLKVVSNLP-YNISSPLIFKLLE--KPKFRLAVLMV-QKEVAERLTAK 138 (253)
T ss_pred HcCCcceEEEcCC-hhhHHHHHHHHhc--cCCCceEEEEe-hHHHHHHHccC
Confidence 577 7776543 3334444444443 55655555544 44455555443
No 222
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.38 E-value=4.2e-06 Score=93.75 Aligned_cols=110 Identities=11% Similarity=0.158 Sum_probs=79.0
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCC-C-CCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 530 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ-D-KSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 530 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~-~-~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
..+||.+|.|+|++...+... +..+|++||+++..++.|++++.+.. + ++++++.+|+.+++++...
T Consensus 221 g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~---------- 289 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRD---------- 289 (396)
T ss_pred CCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHh----------
Confidence 478999999999986544432 34499999999999999999984321 2 4799999999999977541
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCC-----hHHHHHHHHHccCcCcEEEE
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFV-----EGSFLLTVKDALSEQGLFIV 675 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~-----~~~fl~~~~~~L~~~Gilv~ 675 (759)
.+.+||+||+|...-... ...+. -.+++..+.++|+|||+|+.
T Consensus 290 -------------------~~~~fDlVilDPP~f~~~------k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~ 337 (396)
T PRK15128 290 -------------------RGEKFDVIVMDPPKFVEN------KSQLMGACRGYKDINMLAIQLLNPGGILLT 337 (396)
T ss_pred -------------------cCCCCCEEEECCCCCCCC------hHHHHHHHHHHHHHHHHHHHHcCCCeEEEE
Confidence 135799999976432110 00111 13456678899999998885
No 223
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.38 E-value=5.4e-06 Score=91.22 Aligned_cols=141 Identities=14% Similarity=0.162 Sum_probs=93.2
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccc
Q 004354 530 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 609 (759)
Q Consensus 530 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~ 609 (759)
..+||.||+|.|.++..+....|..+|++||+++.+++.|++.+... .-..+++.+|+...+
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n-~l~~~~~~~D~~~~~----------------- 258 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAAN-GLEGEVFASNVFSDI----------------- 258 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-CCCCEEEEccccccc-----------------
Confidence 35899999999999999999999889999999999999999887431 123567777765421
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChhHHHHHH
Q 004354 610 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVI 689 (759)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~ 689 (759)
..+||+|+.+. +-. .++. ...-....|+..+.+.|+|||.|++=. .+.-. +.
T Consensus 259 ------------------~~~fDlIvsNP--PFH-~g~~--~~~~~~~~~i~~a~~~LkpgG~L~iVa-n~~l~-y~--- 310 (342)
T PRK09489 259 ------------------KGRFDMIISNP--PFH-DGIQ--TSLDAAQTLIRGAVRHLNSGGELRIVA-NAFLP-YP--- 310 (342)
T ss_pred ------------------CCCccEEEECC--Ccc-CCcc--ccHHHHHHHHHHHHHhcCcCCEEEEEE-eCCCC-hH---
Confidence 25799999942 110 0110 000123789999999999999775321 12222 12
Q ss_pred HHHHHhcCceEEEeecCCccEEEEEecC
Q 004354 690 SRMKMVFNHLFCLQLEEDVNLVLFGLSS 717 (759)
Q Consensus 690 ~~l~~vF~~v~~~~~~~~~N~Vl~a~~~ 717 (759)
..+.+.|.++-.+. .+..=.|+-|.+.
T Consensus 311 ~~l~~~Fg~~~~la-~~~~f~v~~a~~~ 337 (342)
T PRK09489 311 DLLDETFGSHEVLA-QTGRFKVYRAIMT 337 (342)
T ss_pred HHHHHHcCCeEEEE-eCCCEEEEEEEcc
Confidence 34456798865554 3334456656543
No 224
>PLN02672 methionine S-methyltransferase
Probab=98.38 E-value=2.5e-06 Score=104.89 Aligned_cols=111 Identities=14% Similarity=0.137 Sum_probs=82.9
Q ss_pred CCeEEEECCCcchhHHHHHHhCC-CeEEEEeCCHHHHHHHHHHhccCC-----------------CCcEEEEeecccCC-
Q 004354 69 PPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDR-----------------SDMRWRVMDMTSMQ- 129 (759)
Q Consensus 69 ~~~ILDlGCG~G~ls~~L~~~G~-~~VtgIDiS~~~I~~a~~r~~~~~-----------------~~i~f~~~D~~~~~- 129 (759)
+.+|||+|||+|.++..++.... .+|+|+|+|+.+++.|++++.... .+++|+++|+.+..
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 35899999999999999988743 479999999999999988875321 35899999987754
Q ss_pred ---CcccEEEeCCC--------------C-h---------------------h----HHHHHHHHHHHhcccCcEEEEEE
Q 004354 130 ---GGLDALMEPEL--------------G-H---------------------K----LGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 130 ---gtfD~Ii~~~~--------------~-~---------------------~----~~~~~l~ei~rvLkpGG~liiit 166 (759)
+.||+|+++.. . + . ...+++.++.++|+|||.+++-.
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi 278 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM 278 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 26999999641 0 0 0 03678889999999999988765
Q ss_pred cC-chhhhh-hhccc
Q 004354 167 LA-ESHVLG-LLFPK 179 (759)
Q Consensus 167 ~~-~~~~~~-~l~~~ 179 (759)
-. |..... .++..
T Consensus 279 G~~q~~~v~~~l~~~ 293 (1082)
T PLN02672 279 GGRPGQAVCERLFER 293 (1082)
T ss_pred CccHHHHHHHHHHHH
Confidence 43 333333 45554
No 225
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.37 E-value=2.5e-06 Score=87.54 Aligned_cols=109 Identities=12% Similarity=0.203 Sum_probs=76.2
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 608 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~ 608 (759)
...+||.||+|||.|+..+++.- ..|+++|+++..+++|+.|---. .=.+........+...
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~G--a~VtgiD~se~~I~~Ak~ha~e~-gv~i~y~~~~~edl~~--------------- 120 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLG--ASVTGIDASEKPIEVAKLHALES-GVNIDYRQATVEDLAS--------------- 120 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCC--CeeEEecCChHHHHHHHHhhhhc-cccccchhhhHHHHHh---------------
Confidence 34799999999999999999884 79999999999999999886210 0012233333222211
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChh
Q 004354 609 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQA 683 (759)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~ 683 (759)
.+++||+|++ -+-..-+.-| ..|++.|.++++|||++++-.+.|+..
T Consensus 121 ------------------~~~~FDvV~c----mEVlEHv~dp------~~~~~~c~~lvkP~G~lf~STinrt~k 167 (243)
T COG2227 121 ------------------AGGQFDVVTC----MEVLEHVPDP------ESFLRACAKLVKPGGILFLSTINRTLK 167 (243)
T ss_pred ------------------cCCCccEEEE----hhHHHccCCH------HHHHHHHHHHcCCCcEEEEeccccCHH
Confidence 1368999997 2211111112 569999999999999999887777644
No 226
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.36 E-value=7.3e-06 Score=82.49 Aligned_cols=145 Identities=14% Similarity=0.172 Sum_probs=92.1
Q ss_pred CCCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHH--HHhhcccCccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF--VREMKSSSATDEM 604 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~--l~~~~~~~~~~~~ 604 (759)
....+||+||.|+|.++..+...+ +..+|++||++|.+ .+ ++++++.+|..+. +.....
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~--------~~---~~i~~~~~d~~~~~~~~~l~~------- 92 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK--------PI---ENVDFIRGDFTDEEVLNKIRE------- 92 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc--------cC---CCceEEEeeCCChhHHHHHHH-------
Confidence 345789999999999998887776 45689999999965 22 4578888886432 111110
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCC----ChHHHHHHHHHccCcCcEEEEEecCC
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF----VEGSFLLTVKDALSEQGLFIVNLVSR 680 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f----~~~~fl~~~~~~L~~~Gilv~N~~~~ 680 (759)
.....+||+|+.|... +..|..+. .+. .-..++..+.+.|+|||.+++.....
T Consensus 93 --------------------~~~~~~~D~V~~~~~~--~~~g~~~~-~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~ 149 (188)
T TIGR00438 93 --------------------RVGDDKVDVVMSDAAP--NISGYWDI-DHLRSIDLVELALDIAKEVLKPKGNFVVKVFQG 149 (188)
T ss_pred --------------------HhCCCCccEEEcCCCC--CCCCCccc-cHHHHHHHHHHHHHHHHHHccCCCEEEEEEccC
Confidence 0013579999997521 11111000 011 12578999999999999999976443
Q ss_pred ChhHHHHHHHHHHHhcCceEEEee--cCCcc--EEEEEe
Q 004354 681 SQATKDMVISRMKMVFNHLFCLQL--EEDVN--LVLFGL 715 (759)
Q Consensus 681 ~~~~~~~v~~~l~~vF~~v~~~~~--~~~~N--~Vl~a~ 715 (759)
.. ...++..++..|..+..++. ..+.| .+++|.
T Consensus 150 ~~--~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (188)
T TIGR00438 150 EE--IDEYLNELRKLFEKVKVTKPQASRKRSAEVYIVAK 186 (188)
T ss_pred cc--HHHHHHHHHhhhceEEEeCCCCCCcccceEEEEEe
Confidence 22 23578888888977666653 33333 355554
No 227
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.36 E-value=2e-06 Score=95.44 Aligned_cols=118 Identities=19% Similarity=0.149 Sum_probs=93.9
Q ss_pred cccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC---CCcEEEE
Q 004354 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR---SDMRWRV 122 (759)
Q Consensus 46 W~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~---~~i~f~~ 122 (759)
+|.+....+..+.+++ .+.+||++-|=||.++.+.+..|.++||+||.|..+++.+++++.-++ ....|++
T Consensus 201 fFlDqR~~R~~l~~~~------~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~ 274 (393)
T COG1092 201 FFLDQRDNRRALGELA------AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIV 274 (393)
T ss_pred eeHHhHHHHHHHhhhc------cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeeh
Confidence 3444444555555554 378999999999999999999999889999999999999999875543 3478999
Q ss_pred eecccCC-------CcccEEEeCCCC-----------hhHHHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 123 MDMTSMQ-------GGLDALMEPELG-----------HKLGNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 123 ~D~~~~~-------gtfD~Ii~~~~~-----------~~~~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
+|+.++- .+||+|+..+.. ......++..+.++|+|||.+++.+...
T Consensus 275 ~Dvf~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 275 GDVFKWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred hhHHHHHHHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 9998875 499999996511 1126788899999999999999998653
No 228
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.36 E-value=2.1e-06 Score=89.06 Aligned_cols=91 Identities=18% Similarity=0.287 Sum_probs=70.8
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC---CcccEEEeCCCCh--
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ---GGLDALMEPELGH-- 142 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~---gtfD~Ii~~~~~~-- 142 (759)
...++||||+|.|..+..|+.. |++|++.++|+.|....+++ + |.+.|..++. ..||+|.|.+...
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr~rL~~k----g----~~vl~~~~w~~~~~~fDvIscLNvLDRc 164 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMRWRLSKK----G----FTVLDIDDWQQTDFKFDVISCLNVLDRC 164 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh-cceEEeecCCHHHHHHHHhC----C----CeEEehhhhhccCCceEEEeehhhhhcc
Confidence 4568999999999999999776 88899999999776544433 2 3344444444 6899999987443
Q ss_pred hHHHHHHHHHHHhcccCcEEEEEEc
Q 004354 143 KLGNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 143 ~~~~~~l~ei~rvLkpGG~liiit~ 167 (759)
..+..+|+.+++.|+|+|++++...
T Consensus 165 ~~P~~LL~~i~~~l~p~G~lilAvV 189 (265)
T PF05219_consen 165 DRPLTLLRDIRRALKPNGRLILAVV 189 (265)
T ss_pred CCHHHHHHHHHHHhCCCCEEEEEEE
Confidence 2389999999999999999887753
No 229
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.36 E-value=2.7e-06 Score=90.33 Aligned_cols=107 Identities=17% Similarity=0.185 Sum_probs=80.2
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
....+||.||.|.|.++..|...+ ..++++||++|.+++.|++.+.. .++++++.+|+.+. .
T Consensus 51 ~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~--~~~i~~~~~D~~~~----~----------- 112 (263)
T PTZ00098 51 NENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSD--KNKIEFEANDILKK----D----------- 112 (263)
T ss_pred CCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCc--CCceEEEECCcccC----C-----------
Confidence 345799999999999988887765 45999999999999999998764 56899999997531 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEE-cCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecC
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILII-DVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 679 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~-D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~ 679 (759)
..+..||+|+. ++.-- + +... -..+|+.+.+.|+|||.|++.-+.
T Consensus 113 ------------------~~~~~FD~V~s~~~l~h-----~--~~~d--~~~~l~~i~r~LkPGG~lvi~d~~ 158 (263)
T PTZ00098 113 ------------------FPENTFDMIYSRDAILH-----L--SYAD--KKKLFEKCYKWLKPNGILLITDYC 158 (263)
T ss_pred ------------------CCCCCeEEEEEhhhHHh-----C--CHHH--HHHHHHHHHHHcCCCcEEEEEEec
Confidence 11367999997 32111 0 1111 267999999999999999987543
No 230
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=98.35 E-value=7.1e-07 Score=93.00 Aligned_cols=105 Identities=14% Similarity=0.178 Sum_probs=70.5
Q ss_pred CCCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 606 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~ 606 (759)
..+.+||.+|.|+|.++..|.+.. |..+|++||+++.|+++|++...-....+++++.+||.+.- .
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp--~----------- 112 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLP--F----------- 112 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB----S-----------
T ss_pred CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhc--C-----------
Confidence 456799999999999998888775 56799999999999999998863211248999999987641 1
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCC-ChHHHHHHHHHccCcCcEEEEE
Q 004354 607 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF-VEGSFLLTVKDALSEQGLFIVN 676 (759)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f-~~~~fl~~~~~~L~~~Gilv~N 676 (759)
.+..||+|.+ .- |+. .+ --...|+.+.+.|+|||.|++-
T Consensus 113 --------------------~d~sfD~v~~----~f---glr----n~~d~~~~l~E~~RVLkPGG~l~il 152 (233)
T PF01209_consen 113 --------------------PDNSFDAVTC----SF---GLR----NFPDRERALREMYRVLKPGGRLVIL 152 (233)
T ss_dssp ---------------------TT-EEEEEE----ES----GG----G-SSHHHHHHHHHHHEEEEEEEEEE
T ss_pred --------------------CCCceeEEEH----Hh---hHH----hhCCHHHHHHHHHHHcCCCeEEEEe
Confidence 2478999998 11 221 11 1367999999999999977754
No 231
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.35 E-value=6.2e-06 Score=94.17 Aligned_cols=131 Identities=15% Similarity=0.181 Sum_probs=97.4
Q ss_pred CCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 604 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~ 604 (759)
...+||.+|.|.|..+.++...++ ..+|++||+++.+++.|++.+ |+ ++++++.+|+..+. .
T Consensus 250 ~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~---~~v~~~~~Da~~~~---~-------- 315 (445)
T PRK14904 250 PGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI---TIIETIEGDARSFS---P-------- 315 (445)
T ss_pred CCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC---CeEEEEeCcccccc---c--------
Confidence 346899999999999888887764 358999999999999999887 54 36999999987652 1
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcC-CC---CC----------ChHHHHHHHHHccCcC
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCP-AA---DF----------VEGSFLLTVKDALSEQ 670 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scP-p~---~f----------~~~~fl~~~~~~L~~~ 670 (759)
...||+|++|+-.+. .|+..- |. .+ ....+|..+.+.|+||
T Consensus 316 -----------------------~~~fD~Vl~D~Pcsg--~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpg 370 (445)
T PRK14904 316 -----------------------EEQPDAILLDAPCTG--TGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPG 370 (445)
T ss_pred -----------------------CCCCCEEEEcCCCCC--cchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 246999999975432 122111 11 11 1346899999999999
Q ss_pred cEEEEEecCCChhHHHHHHHHHHHhcCc
Q 004354 671 GLFIVNLVSRSQATKDMVISRMKMVFNH 698 (759)
Q Consensus 671 Gilv~N~~~~~~~~~~~v~~~l~~vF~~ 698 (759)
|.+++...+-..+.-+.++..+.+..+.
T Consensus 371 G~lvystcs~~~~Ene~~v~~~l~~~~~ 398 (445)
T PRK14904 371 GVLVYATCSIEPEENELQIEAFLQRHPE 398 (445)
T ss_pred cEEEEEeCCCChhhHHHHHHHHHHhCCC
Confidence 9999998777766666777777665544
No 232
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.35 E-value=1e-06 Score=90.28 Aligned_cols=103 Identities=18% Similarity=0.215 Sum_probs=73.6
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCC-CcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPF-VGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 606 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~-~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~ 606 (759)
....+||.||.|+|..+..|...... ..|++||++|.+++.|++.+.-..-.++.++++||..-...
T Consensus 71 ~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~------------ 138 (209)
T PF01135_consen 71 KPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPE------------ 138 (209)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGG------------
T ss_pred CCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhcccc------------
Confidence 34579999999999999999888644 47999999999999999998321224899999998764322
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecC
Q 004354 607 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 679 (759)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~ 679 (759)
...||.|++.+-..+ .| ..+.+.|++||.||+-+-.
T Consensus 139 ---------------------~apfD~I~v~~a~~~-------ip---------~~l~~qL~~gGrLV~pi~~ 174 (209)
T PF01135_consen 139 ---------------------EAPFDRIIVTAAVPE-------IP---------EALLEQLKPGGRLVAPIGQ 174 (209)
T ss_dssp ---------------------G-SEEEEEESSBBSS------------------HHHHHTEEEEEEEEEEESS
T ss_pred ---------------------CCCcCEEEEeeccch-------HH---------HHHHHhcCCCcEEEEEEcc
Confidence 257999999543321 12 3355669999999998854
No 233
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.35 E-value=1.3e-06 Score=78.64 Aligned_cols=95 Identities=17% Similarity=0.280 Sum_probs=69.4
Q ss_pred EEEEcccccHHHHHHHHhC---CCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccc
Q 004354 533 AVVIGLGAGLLPMFLHECM---PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 609 (759)
Q Consensus 533 vLviGlG~G~l~~~L~~~~---p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~ 609 (759)
||.+|.|+|...+.+...+ |..++++||+++.+++.|++++.- ...+++++++|+.++- ..
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~-~~~~~~~~~~D~~~l~-~~-------------- 64 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSE-DGPKVRFVQADARDLP-FS-------------- 64 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHH-TTTTSEEEESCTTCHH-HH--------------
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchh-cCCceEEEECCHhHCc-cc--------------
Confidence 6899999999999999887 457999999999999999999832 1237999999997752 21
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCC---hHHHHHHHHHccCcCc
Q 004354 610 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFV---EGSFLLTVKDALSEQG 671 (759)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~---~~~fl~~~~~~L~~~G 671 (759)
..+||+|+. .. . .-..|- -..+++.+.++|+|||
T Consensus 65 ------------------~~~~D~v~~----~~----~--~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 65 ------------------DGKFDLVVC----SG----L--SLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp ------------------SSSEEEEEE-----T----T--GGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred ------------------CCCeeEEEE----cC----C--ccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 258999999 10 0 012222 2678999999999998
No 234
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.35 E-value=3.9e-06 Score=89.64 Aligned_cols=82 Identities=15% Similarity=0.192 Sum_probs=65.3
Q ss_pred hhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC-C
Q 004354 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-G 130 (759)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~-g 130 (759)
.+...+.+.+.. .++.+|||+|||+|.++..+++.+. +|+|+|+++.+++.++++... ++++++++|+.+++ .
T Consensus 29 ~i~~~i~~~l~~---~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~--~~v~~i~~D~~~~~~~ 102 (272)
T PRK00274 29 NILDKIVDAAGP---QPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE--DNLTIIEGDALKVDLS 102 (272)
T ss_pred HHHHHHHHhcCC---CCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc--CceEEEEChhhcCCHH
Confidence 344445555543 5678999999999999999999876 699999999999999877632 68999999999887 3
Q ss_pred c--ccEEEeCC
Q 004354 131 G--LDALMEPE 139 (759)
Q Consensus 131 t--fD~Ii~~~ 139 (759)
. +|.|+++.
T Consensus 103 ~~~~~~vv~Nl 113 (272)
T PRK00274 103 ELQPLKVVANL 113 (272)
T ss_pred HcCcceEEEeC
Confidence 3 48888764
No 235
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.34 E-value=2.2e-06 Score=85.35 Aligned_cols=99 Identities=18% Similarity=0.214 Sum_probs=69.3
Q ss_pred CCCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhccCC----CCcEEEEeecccCC-------CcccE
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR----SDMRWRVMDMTSMQ-------GGLDA 134 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~~~----~~i~f~~~D~~~~~-------gtfD~ 134 (759)
..+.+|||+|||+|..+..++.. +..+|+..|..+ +++.++.+..... .++.+...|..+.. +.||+
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred cCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 45789999999999999999888 667899999999 9988888775533 56788888765421 58999
Q ss_pred EEeCCCCh--hHHHHHHHHHHHhcccCcEEEEEE
Q 004354 135 LMEPELGH--KLGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 135 Ii~~~~~~--~~~~~~l~ei~rvLkpGG~liiit 166 (759)
|++.+... .....+++.+.++|+++|.+++..
T Consensus 123 IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~ 156 (173)
T PF10294_consen 123 ILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAY 156 (173)
T ss_dssp EEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEE
T ss_pred EEEecccchHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 99987433 348999999999999999844443
No 236
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.34 E-value=8.8e-06 Score=92.46 Aligned_cols=133 Identities=13% Similarity=0.128 Sum_probs=92.9
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 608 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~ 608 (759)
...+||.+|.|.|..+..+....+..+|+++|+++.+++.+++.+.-. +-+++++.+|+.+......
T Consensus 244 ~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~-g~~~~~~~~D~~~~~~~~~------------ 310 (427)
T PRK10901 244 NGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRL-GLKATVIVGDARDPAQWWD------------ 310 (427)
T ss_pred CCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHc-CCCeEEEEcCcccchhhcc------------
Confidence 446899999999999999998887679999999999999999887221 1236899999876422111
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCC--------------ChHHHHHHHHHccCcCcEEE
Q 004354 609 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF--------------VEGSFLLTVKDALSEQGLFI 674 (759)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f--------------~~~~fl~~~~~~L~~~Gilv 674 (759)
..+||.|++|+..+. .|.....+.. +...+|..+.+.|+|||.++
T Consensus 311 -------------------~~~fD~Vl~D~Pcs~--~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lv 369 (427)
T PRK10901 311 -------------------GQPFDRILLDAPCSA--TGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLL 369 (427)
T ss_pred -------------------cCCCCEEEECCCCCc--ccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEE
Confidence 256999999985432 1211111111 12478999999999999999
Q ss_pred EEecCCChhHHHHHHHHHHHh
Q 004354 675 VNLVSRSQATKDMVISRMKMV 695 (759)
Q Consensus 675 ~N~~~~~~~~~~~v~~~l~~v 695 (759)
+...+-.....+.++..+.+-
T Consensus 370 ystcs~~~~Ene~~v~~~l~~ 390 (427)
T PRK10901 370 YATCSILPEENEQQIKAFLAR 390 (427)
T ss_pred EEeCCCChhhCHHHHHHHHHh
Confidence 887655444444555554443
No 237
>PLN02244 tocopherol O-methyltransferase
Probab=98.34 E-value=3.2e-06 Score=93.18 Aligned_cols=105 Identities=15% Similarity=0.243 Sum_probs=79.8
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 604 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~ 604 (759)
....+||.||+|.|.++..|...+ ..+|++||+++.+++.|++.. |+ .++++++++|+.+. .
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~--~~~v~~~~~D~~~~----~-------- 181 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGL--SDKVSFQVADALNQ----P-------- 181 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCC--CCceEEEEcCcccC----C--------
Confidence 345789999999999999998876 569999999999999998875 33 46799999997653 1
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEec
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 678 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~ 678 (759)
..+..||+|+.- ....-+ | -...+++.+.+.|+|||.|++-.+
T Consensus 182 ---------------------~~~~~FD~V~s~----~~~~h~--~----d~~~~l~e~~rvLkpGG~lvi~~~ 224 (340)
T PLN02244 182 ---------------------FEDGQFDLVWSM----ESGEHM--P----DKRKFVQELARVAAPGGRIIIVTW 224 (340)
T ss_pred ---------------------CCCCCccEEEEC----Cchhcc--C----CHHHHHHHHHHHcCCCcEEEEEEe
Confidence 113679999971 111111 1 125799999999999999987544
No 238
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.33 E-value=6.8e-08 Score=86.45 Aligned_cols=99 Identities=17% Similarity=0.210 Sum_probs=58.1
Q ss_pred EEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccccccc
Q 004354 534 VVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEIT 613 (759)
Q Consensus 534 LviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~~~~ 613 (759)
|.||.|+|.+...|...+|..++++||++|.+++.|++.+.-...........+-.+.....
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 62 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYD------------------ 62 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CC------------------
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcc------------------
Confidence 68999999999999999999999999999999999988873222222222222211111110
Q ss_pred cCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEE
Q 004354 614 SNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLF 673 (759)
Q Consensus 614 ~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gil 673 (759)
...+||+|+. .....-+ + --.++|+.+++.|+|||+|
T Consensus 63 -------------~~~~fD~V~~----~~vl~~l----~--~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 63 -------------PPESFDLVVA----SNVLHHL----E--DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -------------C----SEEEE----E-TTS------S---HHHHHHHHTTT-TSS-EE
T ss_pred -------------cccccceehh----hhhHhhh----h--hHHHHHHHHHHHcCCCCCC
Confidence 1258999997 1111111 1 1268999999999999986
No 239
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.33 E-value=2.2e-06 Score=90.84 Aligned_cols=84 Identities=8% Similarity=0.132 Sum_probs=67.8
Q ss_pred hhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC-C
Q 004354 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-G 130 (759)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~-g 130 (759)
.+...+...+.. .++.+|||+|||+|.++..+++.+. +|+++|+++.+++.++++... .++++++++|+.+++ .
T Consensus 16 ~~~~~iv~~~~~---~~~~~VLEIG~G~G~lt~~L~~~~~-~v~~vEid~~~~~~l~~~~~~-~~~v~ii~~D~~~~~~~ 90 (258)
T PRK14896 16 RVVDRIVEYAED---TDGDPVLEIGPGKGALTDELAKRAK-KVYAIELDPRLAEFLRDDEIA-AGNVEIIEGDALKVDLP 90 (258)
T ss_pred HHHHHHHHhcCC---CCcCeEEEEeCccCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHhcc-CCCEEEEEeccccCCch
Confidence 444455555443 5678999999999999999999854 699999999999999887643 468999999999877 6
Q ss_pred cccEEEeCCC
Q 004354 131 GLDALMEPEL 140 (759)
Q Consensus 131 tfD~Ii~~~~ 140 (759)
.||.|+++..
T Consensus 91 ~~d~Vv~NlP 100 (258)
T PRK14896 91 EFNKVVSNLP 100 (258)
T ss_pred hceEEEEcCC
Confidence 7899998753
No 240
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.33 E-value=2.6e-07 Score=92.80 Aligned_cols=170 Identities=17% Similarity=0.193 Sum_probs=119.0
Q ss_pred CCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC---CcccEEEeCCCChhH-
Q 004354 69 PPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ---GGLDALMEPELGHKL- 144 (759)
Q Consensus 69 ~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~---gtfD~Ii~~~~~~~~- 144 (759)
...++|||||-|.+..+|...|..+++-+|.|-.|++.++..- ...-.+.+.+.|-+.++ +++|+|+++-..||.
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~q-dp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW~N 151 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQ-DPSIETSYFVGDEEFLDFKENSVDLIISSLSLHWTN 151 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccC-CCceEEEEEecchhcccccccchhhhhhhhhhhhhc
Confidence 4579999999999999999999988999999999998875532 22234677788877766 899999998888887
Q ss_pred -HHHHHHHHHHhcccCcEEEEEEcCchhhhhhhccccCCCceEEEEEeCCCCCCCCCceEEEEEEEeCCCccccceeee-
Q 004354 145 -GNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVADKENSSVVLQVTSS- 222 (759)
Q Consensus 145 -~~~~l~ei~rvLkpGG~liiit~~~~~~~~~l~~~~~~~w~v~~~~~~~~~~~~~~~~~f~~v~~K~~~~~~~~~~~~- 222 (759)
....+..++..|||+|.|+...++.+... ++.... ...+......-++...+|.-|-.-+.-+....+..+
T Consensus 152 dLPg~m~~ck~~lKPDg~FiasmlggdTLy-ELR~sl------qLAelER~GGiSphiSPf~qvrDiG~LL~rAGF~m~t 224 (325)
T KOG2940|consen 152 DLPGSMIQCKLALKPDGLFIASMLGGDTLY-ELRCSL------QLAELEREGGISPHISPFTQVRDIGNLLTRAGFSMLT 224 (325)
T ss_pred cCchHHHHHHHhcCCCccchhHHhccccHH-HHHHHh------hHHHHHhccCCCCCcChhhhhhhhhhHHhhcCcccce
Confidence 78889999999999999999888765332 221111 111111111113344455444222222222334334
Q ss_pred cCCCCCccCccchhhHHHHHHhhh
Q 004354 223 FDHSSLDCNKNQAFGIHEALESEN 246 (759)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~ 246 (759)
.|.++....++.+.+|++.++.-.
T Consensus 225 vDtDEi~v~Yp~mfeLm~dLq~Mg 248 (325)
T KOG2940|consen 225 VDTDEIVVGYPRMFELMEDLQGMG 248 (325)
T ss_pred ecccceeecCchHHHHHHHHHhhc
Confidence 677888899999999999988644
No 241
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.32 E-value=3.1e-06 Score=90.28 Aligned_cols=106 Identities=15% Similarity=0.274 Sum_probs=76.6
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 604 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~ 604 (759)
....+||.||+|.|.++.++.+.+ +.+|++|.++++-.+.|++.. |+ .++++|..+|-.++ .
T Consensus 61 ~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl--~~~v~v~~~D~~~~----~-------- 125 (273)
T PF02353_consen 61 KPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGL--EDRVEVRLQDYRDL----P-------- 125 (273)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTS--SSTEEEEES-GGG--------------
T ss_pred CCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCC--CCceEEEEeecccc----C--------
Confidence 456799999999999999999997 679999999999999999887 55 57899999986543 1
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCC---ChHHHHHHHHHccCcCcEEEEEecCCC
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF---VEGSFLLTVKDALSEQGLFIVNLVSRS 681 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f---~~~~fl~~~~~~L~~~Gilv~N~~~~~ 681 (759)
.+||.|+. + +| -.++ .-+.|++.+.+.|+|||.+++..++..
T Consensus 126 ------------------------~~fD~IvS-i-------~~---~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~ 170 (273)
T PF02353_consen 126 ------------------------GKFDRIVS-I-------EM---FEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHR 170 (273)
T ss_dssp -------------------------S-SEEEE-E-------SE---GGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE-
T ss_pred ------------------------CCCCEEEE-E-------ec---hhhcChhHHHHHHHHHHHhcCCCcEEEEEecccc
Confidence 47999886 1 22 1222 226899999999999999998876654
Q ss_pred hh
Q 004354 682 QA 683 (759)
Q Consensus 682 ~~ 683 (759)
..
T Consensus 171 ~~ 172 (273)
T PF02353_consen 171 DP 172 (273)
T ss_dssp -H
T ss_pred cc
Confidence 43
No 242
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.32 E-value=9.2e-06 Score=87.49 Aligned_cols=119 Identities=12% Similarity=0.178 Sum_probs=84.8
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC-CCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~-~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
...+||.+|.|.|.++..+... +..+|++||+||.+++.|++++... -.+++.++.+|... .
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~----~------------ 221 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQ----P------------ 221 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccc----c------------
Confidence 3479999999999999887765 4459999999999999999987432 13456777666211 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChhHHHH
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDM 687 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~~~~~ 687 (759)
...+||+|+.++... . -..++..+.+.|+|||.|++--+.. .....
T Consensus 222 -------------------~~~~fDlVvan~~~~-----------~--l~~ll~~~~~~LkpgG~li~sgi~~--~~~~~ 267 (288)
T TIGR00406 222 -------------------IEGKADVIVANILAE-----------V--IKELYPQFSRLVKPGGWLILSGILE--TQAQS 267 (288)
T ss_pred -------------------cCCCceEEEEecCHH-----------H--HHHHHHHHHHHcCCCcEEEEEeCcH--hHHHH
Confidence 125799999854211 1 1578999999999999999865433 23356
Q ss_pred HHHHHHHhcCc
Q 004354 688 VISRMKMVFNH 698 (759)
Q Consensus 688 v~~~l~~vF~~ 698 (759)
+.+.+++.|.-
T Consensus 268 v~~~~~~~f~~ 278 (288)
T TIGR00406 268 VCDAYEQGFTV 278 (288)
T ss_pred HHHHHHccCce
Confidence 67777766543
No 243
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.31 E-value=3e-06 Score=91.10 Aligned_cols=95 Identities=20% Similarity=0.232 Sum_probs=73.5
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccCC---CcccEEEeCCCCh
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ---GGLDALMEPELGH 142 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~~---gtfD~Ii~~~~~~ 142 (759)
.+..|||+|||+|.++..-++.|.++|+++|.|.-+ +.+.+....+. .-++++.+.+++.. ...|+|++-..+.
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy 138 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGY 138 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhH
Confidence 567999999999999999999999999999999876 67766654432 23788888776654 8999999976555
Q ss_pred hH-HHHHHHHH----HHhcccCcEEE
Q 004354 143 KL-GNQYLSEV----KRLLKSGGKFV 163 (759)
Q Consensus 143 ~~-~~~~l~ei----~rvLkpGG~li 163 (759)
.. .+.+|..+ -+.|+|||.++
T Consensus 139 ~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 139 FLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred HHHHhhhhhhhhhhhhhccCCCceEc
Confidence 44 34444444 58999999876
No 244
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.31 E-value=4.9e-06 Score=84.57 Aligned_cols=110 Identities=13% Similarity=0.241 Sum_probs=88.4
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhcCCC-CCCCeEEEEccHHHHHHhhcccCcccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMS 605 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~Fgl~-~~~rl~v~i~Da~~~l~~~~~~~~~~~~~ 605 (759)
-+++++|.||.=+|.-+......+| ..+|+++|+|+.-++++.+...+. -+..+++++++|.+-|.+.-.
T Consensus 72 ~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~-------- 143 (237)
T KOG1663|consen 72 LNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLA-------- 143 (237)
T ss_pred hCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHh--------
Confidence 4678999999999966555555555 459999999999999998776322 367899999999999998762
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 004354 606 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 677 (759)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~ 677 (759)
..+...||.+|+|.|.... ..+++.+-++|++||+++++-
T Consensus 144 -------------------~~~~~tfDfaFvDadK~nY-------------~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 144 -------------------DGESGTFDFAFVDADKDNY-------------SNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred -------------------cCCCCceeEEEEccchHHH-------------HHHHHHHHhhcccccEEEEec
Confidence 2235789999999987643 379999999999999998853
No 245
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.30 E-value=8e-06 Score=85.50 Aligned_cols=129 Identities=18% Similarity=0.261 Sum_probs=91.9
Q ss_pred hhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh-CC-CeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeec
Q 004354 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GF-HGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDM 125 (759)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~-G~-~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~ 125 (759)
|+.-...+..++.. .|+.+|||.|.|+|.++..|+.. |. .+|+..|+.+..++.|++++...+ .++++.+.|+
T Consensus 25 YpkD~~~I~~~l~i---~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv 101 (247)
T PF08704_consen 25 YPKDISYILMRLDI---RPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDV 101 (247)
T ss_dssp -HHHHHHHHHHTT-----TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-G
T ss_pred eCchHHHHHHHcCC---CCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecce
Confidence 33344456666655 79999999999999999999875 32 369999999999999999886644 3689999999
Q ss_pred ccCC------CcccEEEeCCCChhHHHHHHHHHHHhc-ccCcEEEEEEcCchhhhhhhccccCCCc
Q 004354 126 TSMQ------GGLDALMEPELGHKLGNQYLSEVKRLL-KSGGKFVCLTLAESHVLGLLFPKFRFGW 184 (759)
Q Consensus 126 ~~~~------gtfD~Ii~~~~~~~~~~~~l~ei~rvL-kpGG~liiit~~~~~~~~~l~~~~~~~w 184 (759)
.+.. +.+|+|+..-..+| .++..+.++| ++||++++.+..-+.+.+.+......+|
T Consensus 102 ~~~g~~~~~~~~~DavfLDlp~Pw---~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~gf 164 (247)
T PF08704_consen 102 CEEGFDEELESDFDAVFLDLPDPW---EAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALREHGF 164 (247)
T ss_dssp GCG--STT-TTSEEEEEEESSSGG---GGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTTE
T ss_pred ecccccccccCcccEEEEeCCCHH---HHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCCC
Confidence 6422 57999999765544 5678888999 8999999998776655544433333455
No 246
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.30 E-value=1.7e-05 Score=77.68 Aligned_cols=121 Identities=18% Similarity=0.252 Sum_probs=88.0
Q ss_pred CCCeEEEECCCcchhHHHHHHh--CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC--CcccEEEeCCC---
Q 004354 68 PPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--GGLDALMEPEL--- 140 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~--G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~--gtfD~Ii~~~~--- 140 (759)
...-+||||||+|..+..|+.. +...+.++|++|.+++..++.+..++.+++.++.|+...- ++.|+++.+..
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~~~VDvLvfNPPYVp 122 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRNESVDVLVFNPPYVP 122 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhccCCccEEEECCCcCc
Confidence 3567999999999999999876 3445899999999998877776666667888999876654 88999987540
Q ss_pred --------------------ChhHHHHHHHHHHHhcccCcEEEEEEcCch--hhhhhhccccCCCceEEEEE
Q 004354 141 --------------------GHKLGNQYLSEVKRLLKSGGKFVCLTLAES--HVLGLLFPKFRFGWKMSVHA 190 (759)
Q Consensus 141 --------------------~~~~~~~~l~ei~rvLkpGG~liiit~~~~--~~~~~l~~~~~~~w~v~~~~ 190 (759)
......+++..+-.+|.|.|.|+++..... +..-.+++ ..+|..++..
T Consensus 123 t~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l~--~~g~~~~~~~ 192 (209)
T KOG3191|consen 123 TSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKILE--KKGYGVRIAM 192 (209)
T ss_pred CCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHHh--hcccceeEEE
Confidence 111267788888899999999999987643 22112222 2367666543
No 247
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.30 E-value=2.8e-06 Score=86.30 Aligned_cols=106 Identities=13% Similarity=0.118 Sum_probs=74.7
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 608 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~ 608 (759)
.+.+||.+|+|.|.++.+|.+. ..+|++||+++.+++.|++...-..-.+++++++|..++ ..
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~--~~------------- 92 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNL--TF------------- 92 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhC--Cc-------------
Confidence 3479999999999999999876 359999999999999999876322224588888886543 11
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEE-EEec
Q 004354 609 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFI-VNLV 678 (759)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv-~N~~ 678 (759)
...||+|+. ...... .++. .-..+++.+++.|+|||.++ +...
T Consensus 93 -------------------~~~fD~I~~----~~~~~~--~~~~--~~~~~l~~i~~~LkpgG~~~~~~~~ 136 (197)
T PRK11207 93 -------------------DGEYDFILS----TVVLMF--LEAK--TIPGLIANMQRCTKPGGYNLIVAAM 136 (197)
T ss_pred -------------------CCCcCEEEE----ecchhh--CCHH--HHHHHHHHHHHHcCCCcEEEEEEEe
Confidence 246999986 110000 0111 12679999999999999854 4443
No 248
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.30 E-value=1.5e-05 Score=81.57 Aligned_cols=103 Identities=17% Similarity=0.213 Sum_probs=79.5
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCC-CcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPF-VGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~-~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
...+||.+|.|.|.++..+....|. .+++++|+++.+++.+++.+. ..++++++.+|..+.. .
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~~--~------------ 102 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADAEALP--F------------ 102 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--cCCCceEEecchhcCC--C------------
Confidence 5679999999999998888888775 699999999999999999987 3568999999976542 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEE
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 676 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N 676 (759)
....||+|++...- ..+ .. -..+++.+++.|+|||.+++-
T Consensus 103 -------------------~~~~~D~i~~~~~~----~~~----~~--~~~~l~~~~~~L~~gG~l~~~ 142 (223)
T TIGR01934 103 -------------------EDNSFDAVTIAFGL----RNV----TD--IQKALREMYRVLKPGGRLVIL 142 (223)
T ss_pred -------------------CCCcEEEEEEeeee----CCc----cc--HHHHHHHHHHHcCCCcEEEEE
Confidence 12579999872211 111 11 257999999999999988753
No 249
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.29 E-value=6.8e-06 Score=83.55 Aligned_cols=105 Identities=13% Similarity=0.170 Sum_probs=76.0
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccc
Q 004354 530 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 609 (759)
Q Consensus 530 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~ 609 (759)
..+||.+|.|.|+++..+.... ..+|++||+|+..++.|++.+....-++++++.+|+.+++...
T Consensus 54 ~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~-------------- 118 (199)
T PRK10909 54 DARCLDCFAGSGALGLEALSRY-AAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQP-------------- 118 (199)
T ss_pred CCEEEEcCCCccHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhc--------------
Confidence 3689999999999997533332 3599999999999999999863222247999999999887432
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHc--cCcCcEEEEEec
Q 004354 610 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDA--LSEQGLFIVNLV 678 (759)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~--L~~~Gilv~N~~ 678 (759)
...||+|++|..- ... +..+.++.+... |.|+|++++-..
T Consensus 119 ------------------~~~fDlV~~DPPy----------~~g-~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 119 ------------------GTPHNVVFVDPPF----------RKG-LLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred ------------------CCCceEEEECCCC----------CCC-hHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 1469999996420 011 235566766664 799999997753
No 250
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.28 E-value=1.2e-05 Score=85.44 Aligned_cols=126 Identities=17% Similarity=0.272 Sum_probs=91.0
Q ss_pred CeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccccc
Q 004354 531 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGN 610 (759)
Q Consensus 531 ~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~ 610 (759)
.+||.+|+|.|.|...|....|..+|+.||+|..-++.||+..-...-++..|+.+|..+=
T Consensus 160 ~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~------------------- 220 (300)
T COG2813 160 GKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEP------------------- 220 (300)
T ss_pred CcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccc-------------------
Confidence 4999999999999999999999999999999999999999998443223336676663321
Q ss_pred ccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCc--EEEEEecCCChhHHHHH
Q 004354 611 EITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQG--LFIVNLVSRSQATKDMV 688 (759)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~G--ilv~N~~~~~~~~~~~v 688 (759)
. ..+||+||.. .+-. .|.. -..-+..+++..++++|++|| .+|.| +... .
T Consensus 221 ---------------v-~~kfd~IisN--PPfh-~G~~--v~~~~~~~~i~~A~~~L~~gGeL~iVan---~~l~----y 272 (300)
T COG2813 221 ---------------V-EGKFDLIISN--PPFH-AGKA--VVHSLAQEIIAAAARHLKPGGELWIVAN---RHLP----Y 272 (300)
T ss_pred ---------------c-cccccEEEeC--CCcc-CCcc--hhHHHHHHHHHHHHHhhccCCEEEEEEc---CCCC----h
Confidence 1 2489999982 2211 1110 111234599999999999999 45556 3333 4
Q ss_pred HHHHHHhcCceEEEe
Q 004354 689 ISRMKMVFNHLFCLQ 703 (759)
Q Consensus 689 ~~~l~~vF~~v~~~~ 703 (759)
-..|.++|.++..+.
T Consensus 273 ~~~L~~~Fg~v~~la 287 (300)
T COG2813 273 EKKLKELFGNVEVLA 287 (300)
T ss_pred HHHHHHhcCCEEEEE
Confidence 567889999887765
No 251
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.28 E-value=2.7e-06 Score=87.72 Aligned_cols=103 Identities=12% Similarity=0.148 Sum_probs=77.1
Q ss_pred CeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC-CCCCCeEEEEccHHHHHHhhcccCcccccccccc
Q 004354 531 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF-TQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 609 (759)
Q Consensus 531 ~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl-~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~ 609 (759)
++||.||.|.|.++..+...+|..+++++|+++.+++.|++.+.- ..+++++++.+|..+. .
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~----~------------- 63 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKD----P------------- 63 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccC----C-------------
Confidence 379999999999998888888888999999999999999998721 1256899999885332 1
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 004354 610 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 677 (759)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~ 677 (759)
...+||+|+.- . +.+.... ...+|+.+++.|+|||.+++--
T Consensus 64 -----------------~~~~fD~I~~~----~----~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~ 104 (224)
T smart00828 64 -----------------FPDTYDLVFGF----E----VIHHIKD--KMDLFSNISRHLKDGGHLVLAD 104 (224)
T ss_pred -----------------CCCCCCEeehH----H----HHHhCCC--HHHHHHHHHHHcCCCCEEEEEE
Confidence 01469999861 1 0000111 3689999999999999888654
No 252
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.27 E-value=5.8e-06 Score=84.77 Aligned_cols=100 Identities=18% Similarity=0.165 Sum_probs=74.2
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
....+||.||.|.|.++.+|.... .++++||+++.+++.|++++.-..-.+++++.+|+.+.+.
T Consensus 77 ~~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-------------- 140 (212)
T PRK00312 77 KPGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWP-------------- 140 (212)
T ss_pred CCCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCC--------------
Confidence 345799999999999888887774 3899999999999999998732112348999999743211
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEec
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 678 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~ 678 (759)
....||+|+++... ..+.+.+.+.|+|||.+++.+.
T Consensus 141 -------------------~~~~fD~I~~~~~~----------------~~~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 141 -------------------AYAPFDRILVTAAA----------------PEIPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred -------------------cCCCcCEEEEccCc----------------hhhhHHHHHhcCCCcEEEEEEc
Confidence 12579999996421 1223556789999999999875
No 253
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.27 E-value=4e-06 Score=84.95 Aligned_cols=99 Identities=21% Similarity=0.300 Sum_probs=65.3
Q ss_pred CCCeEEEECCCcchhHHH----HHHh---CCC---eEEEEeCCHHHHHHHHHHhc-------------------cC----
Q 004354 68 PPPQILVPGCGNSRLSEH----LYDA---GFH---GITNVDFSKVVISDMLRRNV-------------------RD---- 114 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~----L~~~---G~~---~VtgIDiS~~~I~~a~~r~~-------------------~~---- 114 (759)
...+|+-.||++|.-... |.+. ... +|+|+|+|+.+|+.|++-.- ..
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 567999999999984433 3331 111 59999999999999876310 00
Q ss_pred ------CCCcEEEEeeccc-CC--CcccEEEeCCCC----hhHHHHHHHHHHHhcccCcEEEEEE
Q 004354 115 ------RSDMRWRVMDMTS-MQ--GGLDALMEPELG----HKLGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 115 ------~~~i~f~~~D~~~-~~--gtfD~Ii~~~~~----~~~~~~~l~ei~rvLkpGG~liiit 166 (759)
...+.|.+.|+.+ .+ +.||+|+|-+.. .....++++.+++.|+|||+|++-.
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 0358999999988 33 899999997743 3348999999999999999998764
No 254
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.26 E-value=4.4e-06 Score=84.34 Aligned_cols=101 Identities=8% Similarity=-0.129 Sum_probs=74.5
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccCC------C-cccEEEeC
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ------G-GLDALMEP 138 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~~------g-tfD~Ii~~ 138 (759)
.+.++||++||+|.++..++.+|...|+++|.++.+++.+++++.... .+++++++|+.+.- + .||+|+..
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~D 128 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLD 128 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEEC
Confidence 467999999999999999999998889999999999999888765433 35889999985531 2 37888876
Q ss_pred CCCh-hHHHHHHHHHH--HhcccCcEEEEEEcC
Q 004354 139 ELGH-KLGNQYLSEVK--RLLKSGGKFVCLTLA 168 (759)
Q Consensus 139 ~~~~-~~~~~~l~ei~--rvLkpGG~liiit~~ 168 (759)
+... ......+..+. .+|+++|.+++....
T Consensus 129 PPy~~~~~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 129 PPFFNGALQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred cCCCCCcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 5322 22444444443 468888877766543
No 255
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.26 E-value=3.3e-06 Score=86.22 Aligned_cols=98 Identities=15% Similarity=0.102 Sum_probs=78.5
Q ss_pred CCCeEEEECCCcchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccCC---------CcccE
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAG--FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ---------GGLDA 134 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G--~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~~---------gtfD~ 134 (759)
...+||||||++|.-+.+|++.- -.+|+.+|+++...+.|++.+...+ .+++++.+|+.+.- ++||+
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~ 124 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDF 124 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEE
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeE
Confidence 46799999999999999999751 1369999999999999988775543 47999999987642 47999
Q ss_pred EEeCCCChhHHHHHHHHHHHhcccCcEEEEEE
Q 004354 135 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 135 Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit 166 (759)
|+.... ......++..+.++|+|||.+++-.
T Consensus 125 VFiDa~-K~~y~~y~~~~~~ll~~ggvii~DN 155 (205)
T PF01596_consen 125 VFIDAD-KRNYLEYFEKALPLLRPGGVIIADN 155 (205)
T ss_dssp EEEEST-GGGHHHHHHHHHHHEEEEEEEEEET
T ss_pred EEEccc-ccchhhHHHHHhhhccCCeEEEEcc
Confidence 999764 3346789999999999999988764
No 256
>PLN02476 O-methyltransferase
Probab=98.26 E-value=7.9e-06 Score=86.89 Aligned_cols=98 Identities=9% Similarity=-0.025 Sum_probs=79.6
Q ss_pred CCCCeEEEECCCcchhHHHHHHh-C-CCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccCC---------Cccc
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ---------GGLD 133 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~-G-~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~~---------gtfD 133 (759)
.+..+|||+|||+|..+.+++.. + -..|+++|.++..++.|++.+++.+ .+++++.+|+.+.- ++||
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD 196 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYD 196 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCC
Confidence 45679999999999999999874 1 1259999999999999999886543 46999999986531 5899
Q ss_pred EEEeCCCChhHHHHHHHHHHHhcccCcEEEEE
Q 004354 134 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 165 (759)
Q Consensus 134 ~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liii 165 (759)
+|+.... ......+++.+.++|+|||.+++-
T Consensus 197 ~VFIDa~-K~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 197 FAFVDAD-KRMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred EEEECCC-HHHHHHHHHHHHHhcCCCcEEEEe
Confidence 9999764 344788999999999999998764
No 257
>PTZ00146 fibrillarin; Provisional
Probab=98.25 E-value=2.3e-05 Score=83.62 Aligned_cols=141 Identities=20% Similarity=0.237 Sum_probs=92.0
Q ss_pred CCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHH----HHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLT----MLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDE 603 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~----v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~ 603 (759)
...+||.||+|.|.++..+..... .-.|.+||+++. ++++|++. +++..+++|+..-. ...
T Consensus 132 pG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r------~NI~~I~~Da~~p~-~y~------- 197 (293)
T PTZ00146 132 PGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR------PNIVPIIEDARYPQ-KYR------- 197 (293)
T ss_pred CCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc------CCCEEEECCccChh-hhh-------
Confidence 346899999999999999999874 348999999986 55666533 46889999976421 111
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCC--
Q 004354 604 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS-- 681 (759)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~-- 681 (759)
.....+|+|++|+...|. ...++.+++..|+|+|.|++-+-.++
T Consensus 198 ----------------------~~~~~vDvV~~Dva~pdq------------~~il~~na~r~LKpGG~~vI~ika~~id 243 (293)
T PTZ00146 198 ----------------------MLVPMVDVIFADVAQPDQ------------ARIVALNAQYFLKNGGHFIISIKANCID 243 (293)
T ss_pred ----------------------cccCCCCEEEEeCCCcch------------HHHHHHHHHHhccCCCEEEEEEeccccc
Confidence 001469999999843221 13566789999999999988432221
Q ss_pred -----hhHHHHHHHHHHHh-cCceEEEeec--CCccEEEEEecC
Q 004354 682 -----QATKDMVISRMKMV-FNHLFCLQLE--EDVNLVLFGLSS 717 (759)
Q Consensus 682 -----~~~~~~v~~~l~~v-F~~v~~~~~~--~~~N~Vl~a~~~ 717 (759)
.+....-++.|++. |.-+-.+.++ +....++++...
T Consensus 244 ~g~~pe~~f~~ev~~L~~~GF~~~e~v~L~Py~~~h~~v~~~~~ 287 (293)
T PTZ00146 244 STAKPEVVFASEVQKLKKEGLKPKEQLTLEPFERDHAVVIGVYR 287 (293)
T ss_pred cCCCHHHHHHHHHHHHHHcCCceEEEEecCCccCCcEEEEEEEc
Confidence 11122235778877 8865555443 233455555443
No 258
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.25 E-value=1.5e-05 Score=90.85 Aligned_cols=137 Identities=15% Similarity=0.166 Sum_probs=97.2
Q ss_pred CCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 604 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~ 604 (759)
...+||.+|.|.|..+.++...++ ..+|+++|+++.+++.+++.+ |+ .+++++.+|+.++.....
T Consensus 252 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~---~~v~~~~~D~~~~~~~~~-------- 320 (434)
T PRK14901 252 PGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGL---KSIKILAADSRNLLELKP-------- 320 (434)
T ss_pred CcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCC---CeEEEEeCChhhcccccc--------
Confidence 446899999999999988888764 359999999999999999876 54 359999999887632110
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCC-cCCCCC------------ChHHHHHHHHHccCcCc
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMT-CPAADF------------VEGSFLLTVKDALSEQG 671 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~s-cPp~~f------------~~~~fl~~~~~~L~~~G 671 (759)
.....||.|++|+..+. .+.+. .|-..+ +..++|..+.+.|+|||
T Consensus 321 ---------------------~~~~~fD~Vl~DaPCSg-~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG 378 (434)
T PRK14901 321 ---------------------QWRGYFDRILLDAPCSG-LGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGG 378 (434)
T ss_pred ---------------------cccccCCEEEEeCCCCc-ccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 01257999999986442 11111 111111 14688999999999999
Q ss_pred EEEEEecCCChhHHHHHHHHHHHhcCc
Q 004354 672 LFIVNLVSRSQATKDMVISRMKMVFNH 698 (759)
Q Consensus 672 ilv~N~~~~~~~~~~~v~~~l~~vF~~ 698 (759)
.||+...+-..+..+.++..+.+-++.
T Consensus 379 ~lvystcsi~~~Ene~~v~~~l~~~~~ 405 (434)
T PRK14901 379 TLVYATCTLHPAENEAQIEQFLARHPD 405 (434)
T ss_pred EEEEEeCCCChhhHHHHHHHHHHhCCC
Confidence 999887666665556667666555554
No 259
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.24 E-value=1.1e-05 Score=82.01 Aligned_cols=139 Identities=14% Similarity=0.118 Sum_probs=90.2
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCC-CcEEEEeecccCC---CcccEEEeCCC---
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRS-DMRWRVMDMTSMQ---GGLDALMEPEL--- 140 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~-~i~f~~~D~~~~~---gtfD~Ii~~~~--- 140 (759)
...+.||.|||.|+.+..++-.-|..|..+|..+..++.|++.+..... -.++.+.-+.++. ++||+|++...
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lgh 134 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGH 134 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GGG
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhcc
Confidence 4578999999999999988766688999999999999999887654223 3578888887776 79999999652
Q ss_pred -ChhHHHHHHHHHHHhcccCcEEEEEEcCc-----------------hhhhhhhccccCCCceEEEEEeCCCCCCCCCce
Q 004354 141 -GHKLGNQYLSEVKRLLKSGGKFVCLTLAE-----------------SHVLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQ 202 (759)
Q Consensus 141 -~~~~~~~~l~ei~rvLkpGG~liiit~~~-----------------~~~~~~l~~~~~~~w~v~~~~~~~~~~~~~~~~ 202 (759)
......++|+.+...|+|+|.+++=.-.. ......++.. .|+.+....... +-+..-+|
T Consensus 135 LTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~--AGl~~v~~~~Q~-~fP~~L~p 211 (218)
T PF05891_consen 135 LTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQ--AGLRLVKEEKQK-GFPKELYP 211 (218)
T ss_dssp S-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHH--CT-EEEEEEE-T-T--TTS-E
T ss_pred CCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHH--cCCEEEEecccc-CCCccceE
Confidence 23348999999999999999888753210 0122333333 366665544432 22355688
Q ss_pred EEEEEEE
Q 004354 203 TFMVVAD 209 (759)
Q Consensus 203 ~f~~v~~ 209 (759)
+++|+++
T Consensus 212 V~myaLr 218 (218)
T PF05891_consen 212 VRMYALR 218 (218)
T ss_dssp EEEEEEE
T ss_pred EEEEEeC
Confidence 9998864
No 260
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.24 E-value=1.4e-05 Score=84.27 Aligned_cols=111 Identities=13% Similarity=0.170 Sum_probs=76.8
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCC-CCCeEEEEccHHHHHHhhcccCccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ-DKSLKVHITDGIKFVREMKSSSATDEMSV 606 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~-~~rl~v~i~Da~~~l~~~~~~~~~~~~~~ 606 (759)
....+||.||.|.|.++..+.... ..+|++||+||.+++.|++.+.... ..++.+..+
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g-~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~-------------------- 176 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLG-AKKVLAVDIDPQAVEAARENAELNGVELNVYLPQG-------------------- 176 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccC--------------------
Confidence 356799999999999998877653 3479999999999999999874311 122222111
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChhHHH
Q 004354 607 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKD 686 (759)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~~~~ 686 (759)
+.+||+|+.++... .-..++..+.+.|+|||.|++.-+... ...
T Consensus 177 ---------------------~~~fD~Vvani~~~-------------~~~~l~~~~~~~LkpgG~lilsgi~~~--~~~ 220 (250)
T PRK00517 177 ---------------------DLKADVIVANILAN-------------PLLELAPDLARLLKPGGRLILSGILEE--QAD 220 (250)
T ss_pred ---------------------CCCcCEEEEcCcHH-------------HHHHHHHHHHHhcCCCcEEEEEECcHh--hHH
Confidence 12699999854321 115688999999999999998643332 234
Q ss_pred HHHHHHHHh
Q 004354 687 MVISRMKMV 695 (759)
Q Consensus 687 ~v~~~l~~v 695 (759)
.+...+.+.
T Consensus 221 ~v~~~l~~~ 229 (250)
T PRK00517 221 EVLEAYEEA 229 (250)
T ss_pred HHHHHHHHC
Confidence 566666665
No 261
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.24 E-value=7.1e-06 Score=88.42 Aligned_cols=84 Identities=14% Similarity=0.210 Sum_probs=67.5
Q ss_pred hhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccC--CCCcEEEEeecccCC
Q 004354 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTSMQ 129 (759)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~--~~~i~f~~~D~~~~~ 129 (759)
.+...+...+.. .++.+|||||||+|.++..+++.+. +|+++|+++.+++.+++++... ..+++++++|+.+..
T Consensus 23 ~i~~~Iv~~~~~---~~~~~VLEIG~G~G~LT~~Ll~~~~-~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~ 98 (294)
T PTZ00338 23 LVLDKIVEKAAI---KPTDTVLEIGPGTGNLTEKLLQLAK-KVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTE 98 (294)
T ss_pred HHHHHHHHhcCC---CCcCEEEEecCchHHHHHHHHHhCC-cEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhc
Confidence 344445554443 5778999999999999999998864 5999999999999999887543 367999999998876
Q ss_pred -CcccEEEeCC
Q 004354 130 -GGLDALMEPE 139 (759)
Q Consensus 130 -gtfD~Ii~~~ 139 (759)
..||.|+++.
T Consensus 99 ~~~~d~VvaNl 109 (294)
T PTZ00338 99 FPYFDVCVANV 109 (294)
T ss_pred ccccCEEEecC
Confidence 7899999864
No 262
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.21 E-value=2.1e-06 Score=80.71 Aligned_cols=95 Identities=15% Similarity=0.171 Sum_probs=75.6
Q ss_pred ccccchhhhHHHHHHhhcC-CCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEe
Q 004354 45 EWYAEWPQLRDPLISLIGA-PTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVM 123 (759)
Q Consensus 45 eW~~~~~~l~~~l~~~l~~-~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~ 123 (759)
|-|...+.+...+...++. .+.-.+.+++|+|||.|.++....-.+.+.|.|+||.|++++.+.+++....-+++++++
T Consensus 24 EQY~T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqc 103 (185)
T KOG3420|consen 24 EQYPTRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQC 103 (185)
T ss_pred hhCCCcHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeee
Confidence 4566666666666555544 222467899999999999997666666778999999999999998887666678899999
Q ss_pred ecccCC---CcccEEEeCC
Q 004354 124 DMTSMQ---GGLDALMEPE 139 (759)
Q Consensus 124 D~~~~~---gtfD~Ii~~~ 139 (759)
|+.++. +.||.++.+.
T Consensus 104 dildle~~~g~fDtaviNp 122 (185)
T KOG3420|consen 104 DILDLELKGGIFDTAVINP 122 (185)
T ss_pred eccchhccCCeEeeEEecC
Confidence 999887 8999999875
No 263
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.20 E-value=1.2e-05 Score=83.45 Aligned_cols=88 Identities=15% Similarity=0.192 Sum_probs=61.9
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCc-EEEEeecccCC--------CcccEEEeC
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDM-RWRVMDMTSMQ--------GGLDALMEP 138 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i-~f~~~D~~~~~--------gtfD~Ii~~ 138 (759)
.+..|||+|||+|.++..+++.|...|+|+|+++.++....+. .+++ .+...|+.... ..+|+++++
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~----~~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS 150 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQ----DERVKVLERTNIRYVTPADIFPDFATFDVSFIS 150 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhc----CCCeeEeecCCcccCCHhHcCCCceeeeEEEee
Confidence 5668999999999999999999988899999999888652222 1222 23333443222 467766664
Q ss_pred CCChhHHHHHHHHHHHhcccCcEEEEEE
Q 004354 139 ELGHKLGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 139 ~~~~~~~~~~l~ei~rvLkpGG~liiit 166 (759)
...++..+.++|+| |.+++..
T Consensus 151 ------~~~~l~~i~~~l~~-~~~~~L~ 171 (228)
T TIGR00478 151 ------LISILPELDLLLNP-NDLTLLF 171 (228)
T ss_pred ------hHhHHHHHHHHhCc-CeEEEEc
Confidence 23468899999999 7766543
No 264
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.20 E-value=1e-05 Score=88.20 Aligned_cols=100 Identities=21% Similarity=0.182 Sum_probs=74.4
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCC-CcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPF-VGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~-~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
...+||+||.|.|.++..+.+..+. ..|++||++|.+++.|++.+.-..-+++.++.+|+.+.+..
T Consensus 80 ~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~------------- 146 (322)
T PRK13943 80 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPE------------- 146 (322)
T ss_pred CCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccc-------------
Confidence 4479999999999999988887753 47999999999999999876221124699999998765322
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 677 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~ 677 (759)
...||+|+++... .+....+.+.|+|||.+++.+
T Consensus 147 --------------------~~~fD~Ii~~~g~----------------~~ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 147 --------------------FAPYDVIFVTVGV----------------DEVPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred --------------------cCCccEEEECCch----------------HHhHHHHHHhcCCCCEEEEEe
Confidence 1459999996321 112334567899999988765
No 265
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.19 E-value=1.6e-05 Score=69.40 Aligned_cols=103 Identities=19% Similarity=0.253 Sum_probs=77.2
Q ss_pred eEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccccc
Q 004354 532 KAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNE 611 (759)
Q Consensus 532 ~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~~ 611 (759)
+++.+|.|.|.+...+.. .+..++.++|+++..++.+++........+++++.+|..++... .
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--------------- 63 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPE-A--------------- 63 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccc-c---------------
Confidence 479999999998887777 46679999999999999998433222356899999998887541 1
Q ss_pred cccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEE
Q 004354 612 ITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 676 (759)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N 676 (759)
..+||+|+.+..-... .-....+++.+.+.|+++|.+++-
T Consensus 64 ----------------~~~~d~i~~~~~~~~~---------~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 64 ----------------DESFDVIISDPPLHHL---------VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ----------------CCceEEEEEccceeeh---------hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 2579999995422110 123478899999999999998864
No 266
>PRK06922 hypothetical protein; Provisional
Probab=98.19 E-value=1.1e-05 Score=93.96 Aligned_cols=115 Identities=17% Similarity=0.170 Sum_probs=81.1
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 608 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~ 608 (759)
...+||.||+|+|.+...|...+|..+++++|+++.|++.|++.... ...+++++.+|+.++-....
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~-~g~~ie~I~gDa~dLp~~fe------------ 484 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQN-EGRSWNVIKGDAINLSSSFE------------ 484 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhh-cCCCeEEEEcchHhCccccC------------
Confidence 45799999999999988888888999999999999999999987532 23468889999877421121
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEcC-----CCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 004354 609 GNEITSNNTRSCNGNCTASNARVDILIIDV-----DSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 677 (759)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~-----~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~ 677 (759)
+..||+|+.-. .+--+..+...++. .-..+|+.+.+.|+|||.+++.-
T Consensus 485 -------------------deSFDvVVsn~vLH~L~syIp~~g~~f~~e--dl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 485 -------------------KESVDTIVYSSILHELFSYIEYEGKKFNHE--VIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred -------------------CCCEEEEEEchHHHhhhhhcccccccccHH--HHHHHHHHHHHHcCCCcEEEEEe
Confidence 35799998621 10000000000000 12679999999999999998863
No 267
>PLN02823 spermine synthase
Probab=98.19 E-value=1.1e-05 Score=88.35 Aligned_cols=99 Identities=15% Similarity=0.228 Sum_probs=79.1
Q ss_pred CCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhcc-----CCCCcEEEEeecccCC----CcccEEEe
Q 004354 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVR-----DRSDMRWRVMDMTSMQ----GGLDALME 137 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~-----~~~~i~f~~~D~~~~~----gtfD~Ii~ 137 (759)
...+||.||+|.|..+.++++. +..+|+.+|+++.+++.+++.+.. ..++++++.+|....- ++||+|++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 4568999999999999998875 456899999999999999887632 2478999999987764 78999998
Q ss_pred CCCCh-------hH-HHHHHH-HHHHhcccCcEEEEEE
Q 004354 138 PELGH-------KL-GNQYLS-EVKRLLKSGGKFVCLT 166 (759)
Q Consensus 138 ~~~~~-------~~-~~~~l~-ei~rvLkpGG~liiit 166 (759)
..... .. -..+++ .+.+.|+|||.+++-.
T Consensus 183 D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 183 DLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred cCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 63211 11 456787 8999999999987653
No 268
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.19 E-value=2.2e-05 Score=78.52 Aligned_cols=141 Identities=14% Similarity=0.195 Sum_probs=95.9
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
+.-.++|.+|.|.|.|+..|.... .+++++|+++..++.|++..+ .-+++++++.|-.++.
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~--~~~~V~~~~~dvp~~~--------------- 102 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLA--GLPHVEWIQADVPEFW--------------- 102 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTT--T-SSEEEEES-TTT-----------------
T ss_pred cccceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcC--CCCCeEEEECcCCCCC---------------
Confidence 445789999999999999998774 599999999999999999985 2478999999865552
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCCh-----HHHHHHHHHccCcCcEEEEEecCC--
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE-----GSFLLTVKDALSEQGLFIVNLVSR-- 680 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~-----~~fl~~~~~~L~~~Gilv~N~~~~-- 680 (759)
...+||+|++ ++ -..|++ ..++..+...|.|||.||+--+..
T Consensus 103 -------------------P~~~FDLIV~----SE--------VlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~ 151 (201)
T PF05401_consen 103 -------------------PEGRFDLIVL----SE--------VLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDAN 151 (201)
T ss_dssp --------------------SS-EEEEEE----ES---------GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHH
T ss_pred -------------------CCCCeeEEEE----eh--------HhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCc
Confidence 1368999998 32 122332 247888999999999999855321
Q ss_pred -----ChhHHHHHHHHHHHhcCceEEEeecC---CccEEEEEecCC
Q 004354 681 -----SQATKDMVISRMKMVFNHLFCLQLEE---DVNLVLFGLSSE 718 (759)
Q Consensus 681 -----~~~~~~~v~~~l~~vF~~v~~~~~~~---~~N~Vl~a~~~~ 718 (759)
+..-.+.++..|++.|..|-.+.+.. +.+-+|..+.++
T Consensus 152 c~~wgh~~ga~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (201)
T PF05401_consen 152 CRRWGHAAGAETVLEMLQEHLTEVERVECRGGSPNEDCLLARFRNP 197 (201)
T ss_dssp HHHTT-S--HHHHHHHHHHHSEEEEEEEEE-SSTTSEEEEEEEE--
T ss_pred ccccCcccchHHHHHHHHHHhhheeEEEEcCCCCCCceEeeeecCC
Confidence 12224678888999998887777543 244566666554
No 269
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.19 E-value=1.7e-05 Score=85.04 Aligned_cols=142 Identities=18% Similarity=0.228 Sum_probs=94.2
Q ss_pred eEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004354 532 KAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 608 (759)
Q Consensus 532 ~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~ 608 (759)
+||.||.|+|+++..|....|..+|+++||+|..+++|++.. |+ .++.++.+| +.....
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l---~~~~~~~~d---lf~~~~------------ 174 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL---VRVLVVQSD---LFEPLR------------ 174 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC---ccEEEEeee---cccccC------------
Confidence 899999999999999999999999999999999999999886 44 445555554 444432
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCC-CC--CC------CcCCCCC--------ChHHHHHHHHHccCcCc
Q 004354 609 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDS-SS--GM------TCPAADF--------VEGSFLLTVKDALSEQG 671 (759)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~-~~--g~------scPp~~f--------~~~~fl~~~~~~L~~~G 671 (759)
++||+|+... +-- .. .+ .-|...+ +-..|+..+.+.|+|+|
T Consensus 175 --------------------~~fDlIVsNP--PYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g 232 (280)
T COG2890 175 --------------------GKFDLIVSNP--PYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGG 232 (280)
T ss_pred --------------------CceeEEEeCC--CCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCc
Confidence 4799999722 100 00 00 0010011 24678889999999999
Q ss_pred EEEEEecCCChhHHHHHHHHHHHhc--CceEEEeecCCccEEEEEec
Q 004354 672 LFIVNLVSRSQATKDMVISRMKMVF--NHLFCLQLEEDVNLVLFGLS 716 (759)
Q Consensus 672 ilv~N~~~~~~~~~~~v~~~l~~vF--~~v~~~~~~~~~N~Vl~a~~ 716 (759)
++++-.-.... +.+.+.+.+.. ..+...+-..+.+.++.+..
T Consensus 233 ~l~le~g~~q~---~~v~~~~~~~~~~~~v~~~~d~~g~~rv~~~~~ 276 (280)
T COG2890 233 VLILEIGLTQG---EAVKALFEDTGFFEIVETLKDLFGRDRVVLAKL 276 (280)
T ss_pred EEEEEECCCcH---HHHHHHHHhcCCceEEEEEecCCCceEEEEEEe
Confidence 99987743332 33444554444 34455554455666666654
No 270
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.18 E-value=1.1e-05 Score=85.38 Aligned_cols=123 Identities=19% Similarity=0.217 Sum_probs=91.3
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 604 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~ 604 (759)
....++|.||+|.|++..++.+.+ +++|++|.++++..+.|++.+ |+ ..+++|...|=.++
T Consensus 71 ~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl--~~~v~v~l~d~rd~------------- 134 (283)
T COG2230 71 KPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGL--EDNVEVRLQDYRDF------------- 134 (283)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCC--CcccEEEecccccc-------------
Confidence 566899999999999999999998 789999999999999999977 76 36899999986655
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEE-cCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCCh-
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILII-DVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQ- 682 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~-D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~- 682 (759)
.++||-|+. .++.- .+ + =.-+.|++.+++.|+|||.+++..+....
T Consensus 135 -----------------------~e~fDrIvSvgmfEh--vg-----~--~~~~~ff~~~~~~L~~~G~~llh~I~~~~~ 182 (283)
T COG2230 135 -----------------------EEPFDRIVSVGMFEH--VG-----K--ENYDDFFKKVYALLKPGGRMLLHSITGPDQ 182 (283)
T ss_pred -----------------------ccccceeeehhhHHH--hC-----c--ccHHHHHHHHHhhcCCCceEEEEEecCCCc
Confidence 245999985 22111 00 0 01378999999999999999887766543
Q ss_pred hHHHHHHHHHHHhcCc
Q 004354 683 ATKDMVISRMKMVFNH 698 (759)
Q Consensus 683 ~~~~~v~~~l~~vF~~ 698 (759)
......--..+-+||.
T Consensus 183 ~~~~~~~~i~~yiFPg 198 (283)
T COG2230 183 EFRRFPDFIDKYIFPG 198 (283)
T ss_pred ccccchHHHHHhCCCC
Confidence 2212223334567775
No 271
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.17 E-value=1.3e-05 Score=87.81 Aligned_cols=101 Identities=15% Similarity=0.067 Sum_probs=76.8
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 608 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~ 608 (759)
...+||.||.|+|.+...+...++..++++||+++.+++.|++.+. .++++++.+|+.+. .
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~---~~~i~~i~gD~e~l----p------------ 173 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIIEGDAEDL----P------------ 173 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh---ccCCeEEeccHHhC----C------------
Confidence 3468999999999988888887777899999999999999999875 35688999997653 1
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEE
Q 004354 609 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 675 (759)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~ 675 (759)
.....||+|+.-. ...-. | -....|+.+.+.|+|||.+++
T Consensus 174 -----------------~~~~sFDvVIs~~----~L~~~--~----d~~~~L~e~~rvLkPGG~LvI 213 (340)
T PLN02490 174 -----------------FPTDYADRYVSAG----SIEYW--P----DPQRGIKEAYRVLKIGGKACL 213 (340)
T ss_pred -----------------CCCCceeEEEEcC----hhhhC--C----CHHHHHHHHHHhcCCCcEEEE
Confidence 1135799998721 10000 1 125689999999999998876
No 272
>PRK14968 putative methyltransferase; Provisional
Probab=98.17 E-value=2.7e-05 Score=77.63 Aligned_cols=115 Identities=14% Similarity=0.198 Sum_probs=77.1
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC--CCCCeEEEEccHHHHHHhhcccCccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT--QDKSLKVHITDGIKFVREMKSSSATDEMSV 606 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~--~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~ 606 (759)
+..+||.+|.|.|.++..+... ..+++++|++|.+++.|++.+... .+.++.++.+|..+.+ .
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~---~---------- 87 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPF---R---------- 87 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccc---c----------
Confidence 4468999999999999888877 469999999999999998887331 1222888888864421 1
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCC--C--------CCCcC-CCCCChHHHHHHHHHccCcCcEEEE
Q 004354 607 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSS--S--------GMTCP-AADFVEGSFLLTVKDALSEQGLFIV 675 (759)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~--~--------g~scP-p~~f~~~~fl~~~~~~L~~~Gilv~ 675 (759)
..+||+|+.+.--.... . ...+. .....-..+++.+.+.|+|+|.+++
T Consensus 88 ---------------------~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~ 146 (188)
T PRK14968 88 ---------------------GDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILL 146 (188)
T ss_pred ---------------------ccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEE
Confidence 23799999843100000 0 00000 0011235689999999999999888
Q ss_pred EecC
Q 004354 676 NLVS 679 (759)
Q Consensus 676 N~~~ 679 (759)
.+.+
T Consensus 147 ~~~~ 150 (188)
T PRK14968 147 LQSS 150 (188)
T ss_pred EEcc
Confidence 7644
No 273
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.17 E-value=1.2e-05 Score=85.69 Aligned_cols=106 Identities=13% Similarity=0.165 Sum_probs=75.4
Q ss_pred CCCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 606 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~ 606 (759)
....+||+||.|+|.....+...+ +..+|++||+++.+++.|++.+.-..-++++++.+|..+. .
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l----~---------- 141 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEAL----P---------- 141 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhC----C----------
Confidence 455799999999998776666654 4558999999999999999875211124789999986432 1
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEE
Q 004354 607 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 676 (759)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N 676 (759)
..+..||+|+...--. . .+ -...+++.+.+.|+|||.|++-
T Consensus 142 -------------------~~~~~fD~Vi~~~v~~-----~--~~---d~~~~l~~~~r~LkpGG~l~i~ 182 (272)
T PRK11873 142 -------------------VADNSVDVIISNCVIN-----L--SP---DKERVFKEAFRVLKPGGRFAIS 182 (272)
T ss_pred -------------------CCCCceeEEEEcCccc-----C--CC---CHHHHHHHHHHHcCCCcEEEEE
Confidence 1135799999743110 0 01 1257899999999999988873
No 274
>PRK08317 hypothetical protein; Provisional
Probab=98.17 E-value=2e-05 Score=81.33 Aligned_cols=105 Identities=15% Similarity=0.111 Sum_probs=78.3
Q ss_pred CCCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 606 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~ 606 (759)
....+||.+|.|+|.++..+...+ |..+++++|+++.+++.|++.... ..++++++.+|....- .
T Consensus 18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~d~~~~~--~----------- 83 (241)
T PRK08317 18 QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG-LGPNVEFVRGDADGLP--F----------- 83 (241)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC-CCCceEEEecccccCC--C-----------
Confidence 455799999999999988888877 677999999999999999988322 2457899988864421 1
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEE
Q 004354 607 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 676 (759)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N 676 (759)
....||+|+...--. .+. -...+++.+.+.|+|||.+++-
T Consensus 84 --------------------~~~~~D~v~~~~~~~----~~~------~~~~~l~~~~~~L~~gG~l~~~ 123 (241)
T PRK08317 84 --------------------PDGSFDAVRSDRVLQ----HLE------DPARALAEIARVLRPGGRVVVL 123 (241)
T ss_pred --------------------CCCCceEEEEechhh----ccC------CHHHHHHHHHHHhcCCcEEEEE
Confidence 135799999843111 111 1267999999999999988764
No 275
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.14 E-value=9.6e-06 Score=82.66 Aligned_cols=127 Identities=18% Similarity=0.269 Sum_probs=85.8
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeE----EEEccHHHHHHhhcccCcccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLK----VHITDGIKFVREMKSSSATDE 603 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~----v~i~Da~~~l~~~~~~~~~~~ 603 (759)
-.+..+|.||+-.|.|+..++..|....|.+||||+..++.|+++..+..+.... ..++++..|..=.. ...
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~-~~~--- 132 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQ-RNE--- 132 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccc-ccc---
Confidence 4678899999999999999999998889999999999999999998665332222 22334333321111 000
Q ss_pred cccccccccccCCCCCCCCC-C--------------CCCCCceeEEEE-------cCCCCCCCCCCCcCCCCCChHHHHH
Q 004354 604 MSVVHGNEITSNNTRSCNGN-C--------------TASNARVDILII-------DVDSPDSSSGMTCPAADFVEGSFLL 661 (759)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~-~--------------~~~~~~yD~Ii~-------D~~s~d~~~g~scPp~~f~~~~fl~ 661 (759)
..++.+.+.++. . .....+||+|+. -++-+| .|| ..|++
T Consensus 133 --------a~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD--~GL---------~~ff~ 193 (288)
T KOG2899|consen 133 --------ADRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGD--DGL---------RRFFR 193 (288)
T ss_pred --------ccccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEeccccc--HHH---------HHHHH
Confidence 111111111111 0 124678999984 555555 355 88999
Q ss_pred HHHHccCcCcEEEEEe
Q 004354 662 TVKDALSEQGLFIVNL 677 (759)
Q Consensus 662 ~~~~~L~~~Gilv~N~ 677 (759)
++.++|.|||+||+-=
T Consensus 194 kis~ll~pgGiLvvEP 209 (288)
T KOG2899|consen 194 KISSLLHPGGILVVEP 209 (288)
T ss_pred HHHHhhCcCcEEEEcC
Confidence 9999999999999653
No 276
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.14 E-value=1.8e-05 Score=82.85 Aligned_cols=96 Identities=18% Similarity=0.140 Sum_probs=75.7
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCC-CeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCCCcccEEEeCCCChh--
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQGGLDALMEPELGHK-- 143 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~-~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~gtfD~Ii~~~~~~~-- 143 (759)
.+..+|||||+|+|.++..+++... -+++..|. |.+++.+++ ..+++++.+|+.+....+|+++.....|.
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-----~~rv~~~~gd~f~~~P~~D~~~l~~vLh~~~ 172 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-----ADRVEFVPGDFFDPLPVADVYLLRHVLHDWS 172 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-----TTTEEEEES-TTTCCSSESEEEEESSGGGS-
T ss_pred cCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-----ccccccccccHHhhhccccceeeehhhhhcc
Confidence 4556899999999999999998732 25999998 778888776 57899999999843344999998765543
Q ss_pred --HHHHHHHHHHHhcccC--cEEEEEEcC
Q 004354 144 --LGNQYLSEVKRLLKSG--GKFVCLTLA 168 (759)
Q Consensus 144 --~~~~~l~ei~rvLkpG--G~liiit~~ 168 (759)
....+|+++++.|+|| |+++++..-
T Consensus 173 d~~~~~iL~~~~~al~pg~~g~llI~e~~ 201 (241)
T PF00891_consen 173 DEDCVKILRNAAAALKPGKDGRLLIIEMV 201 (241)
T ss_dssp HHHHHHHHHHHHHHSEECTTEEEEEEEEE
T ss_pred hHHHHHHHHHHHHHhCCCCCCeEEEEeec
Confidence 3889999999999999 999998753
No 277
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.13 E-value=1.3e-05 Score=81.39 Aligned_cols=131 Identities=16% Similarity=0.184 Sum_probs=96.9
Q ss_pred CeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccccc
Q 004354 531 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGN 610 (759)
Q Consensus 531 ~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~ 610 (759)
+-+|.||.|.|-....+....|+..+.+||+....+..|.+......-++++++.+||..++...-
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~-------------- 84 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLF-------------- 84 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHS--------------
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcc--------------
Confidence 378999999999999999999999999999999999988877622234789999999999998865
Q ss_pred ccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChhHHHHHHH
Q 004354 611 EITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVIS 690 (759)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~ 690 (759)
.+...|-|.+=- +||..--.-.-..+++++||..+.++|+|||.|- +.+....+.+.+++
T Consensus 85 ----------------~~~~v~~i~i~F--PDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~--~~TD~~~y~~~~~~ 144 (195)
T PF02390_consen 85 ----------------PPGSVDRIYINF--PDPWPKKRHHKRRLVNPEFLELLARVLKPGGELY--FATDVEEYAEWMLE 144 (195)
T ss_dssp ----------------TTTSEEEEEEES-------SGGGGGGSTTSHHHHHHHHHHEEEEEEEE--EEES-HHHHHHHHH
T ss_pred ----------------cCCchheEEEeC--CCCCcccchhhhhcCCchHHHHHHHHcCCCCEEE--EEeCCHHHHHHHHH
Confidence 136789998833 3432111111245899999999999999999875 55677787777777
Q ss_pred HHHHh
Q 004354 691 RMKMV 695 (759)
Q Consensus 691 ~l~~v 695 (759)
.+...
T Consensus 145 ~~~~~ 149 (195)
T PF02390_consen 145 QFEES 149 (195)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 77774
No 278
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.13 E-value=1.5e-05 Score=80.15 Aligned_cols=104 Identities=16% Similarity=0.209 Sum_probs=84.7
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
..+.+|..||+|.|..+..|++.+|...|+++|-+|+|++.|++.. +.+++..+|...|-.
T Consensus 29 ~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl-----p~~~f~~aDl~~w~p-------------- 89 (257)
T COG4106 29 ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL-----PDATFEEADLRTWKP-------------- 89 (257)
T ss_pred cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC-----CCCceecccHhhcCC--------------
Confidence 5678999999999999999999999999999999999999998875 468999999988821
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCC
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 680 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~ 680 (759)
....|+|+..+ ....+ |. ..+.|..+-..|.|||+|++.+...
T Consensus 90 --------------------~~~~dllfaNA----vlqWl---pd---H~~ll~rL~~~L~Pgg~LAVQmPdN 132 (257)
T COG4106 90 --------------------EQPTDLLFANA----VLQWL---PD---HPELLPRLVSQLAPGGVLAVQMPDN 132 (257)
T ss_pred --------------------CCccchhhhhh----hhhhc---cc---cHHHHHHHHHhhCCCceEEEECCCc
Confidence 25688887632 11111 11 3678999999999999999998654
No 279
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=98.12 E-value=3.8e-05 Score=79.07 Aligned_cols=112 Identities=13% Similarity=0.122 Sum_probs=85.3
Q ss_pred hhcccCCCCeEEEEcccccHHHHHHHHhCCC------CcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHH
Q 004354 523 SVASVGKSVKAVVIGLGAGLLPMFLHECMPF------VGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVR 593 (759)
Q Consensus 523 ~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~------~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~ 593 (759)
++..++...++|.+++|+|-++--+.++.+. .+|+++||+|.|+.++++.- ++.++.++.++.+||.+.-
T Consensus 94 ~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~Lp- 172 (296)
T KOG1540|consen 94 SKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLP- 172 (296)
T ss_pred hccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCC-
Confidence 3335566789999999999887666666655 69999999999999999887 8888889999999988751
Q ss_pred hhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEE
Q 004354 594 EMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLF 673 (759)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gil 673 (759)
. .+..||+..+ .-.... |+. -...|+.+.+.|+|||.|
T Consensus 173 -F-------------------------------dd~s~D~yTi----afGIRN--~th----~~k~l~EAYRVLKpGGrf 210 (296)
T KOG1540|consen 173 -F-------------------------------DDDSFDAYTI----AFGIRN--VTH----IQKALREAYRVLKPGGRF 210 (296)
T ss_pred -C-------------------------------CCCcceeEEE----ecceec--CCC----HHHHHHHHHHhcCCCcEE
Confidence 1 2467888877 211111 221 167899999999999988
Q ss_pred EEEe
Q 004354 674 IVNL 677 (759)
Q Consensus 674 v~N~ 677 (759)
.+=-
T Consensus 211 ~cLe 214 (296)
T KOG1540|consen 211 SCLE 214 (296)
T ss_pred EEEE
Confidence 7433
No 280
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.11 E-value=1.9e-05 Score=82.99 Aligned_cols=102 Identities=15% Similarity=0.109 Sum_probs=75.7
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 608 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~ 608 (759)
...+||.||+|+|.++..|... ..+++++|++|.+++.|++.+. ...++.+|+... .
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~-----~~~~~~~d~~~~----~------------ 98 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDA-----ADHYLAGDIESL----P------------ 98 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCC-----CCCEEEcCcccC----c------------
Confidence 4578999999999998888764 4699999999999999998753 246778886442 1
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCC
Q 004354 609 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 680 (759)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~ 680 (759)
..+..||+|+.... .... + --..+|..+.+.|+|||.|++..+..
T Consensus 99 -----------------~~~~~fD~V~s~~~----l~~~--~----d~~~~l~~~~~~Lk~gG~l~~~~~~~ 143 (251)
T PRK10258 99 -----------------LATATFDLAWSNLA----VQWC--G----NLSTALRELYRVVRPGGVVAFTTLVQ 143 (251)
T ss_pred -----------------CCCCcEEEEEECch----hhhc--C----CHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 11357999997321 0001 1 12679999999999999999887554
No 281
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.11 E-value=1.8e-05 Score=81.06 Aligned_cols=111 Identities=17% Similarity=0.087 Sum_probs=84.4
Q ss_pred hhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCC--CeEEEEeCCHHHHHHHHHHhccCC--CCcEEEE-eecc
Q 004354 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF--HGITNVDFSKVVISDMLRRNVRDR--SDMRWRV-MDMT 126 (759)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~--~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~-~D~~ 126 (759)
..-.++..++.. .+..+|||||.+.|.-+.+|+..-. .++|.||++++..+.|++++.+.+ ..+..+. +|..
T Consensus 46 e~g~~L~~L~~~---~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal 122 (219)
T COG4122 46 ETGALLRLLARL---SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDAL 122 (219)
T ss_pred hHHHHHHHHHHh---cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHH
Confidence 334444444444 5678999999999999999987622 369999999999999999886543 3477777 4654
Q ss_pred cCC-----CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEE
Q 004354 127 SMQ-----GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 127 ~~~-----gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit 166 (759)
+.- ++||+|+.... ......+|+.+.++|+|||.+++--
T Consensus 123 ~~l~~~~~~~fDliFIDad-K~~yp~~le~~~~lLr~GGliv~DN 166 (219)
T COG4122 123 DVLSRLLDGSFDLVFIDAD-KADYPEYLERALPLLRPGGLIVADN 166 (219)
T ss_pred HHHHhccCCCccEEEEeCC-hhhCHHHHHHHHHHhCCCcEEEEee
Confidence 432 89999999653 2336789999999999999988764
No 282
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.11 E-value=3.2e-05 Score=78.01 Aligned_cols=139 Identities=16% Similarity=0.264 Sum_probs=78.9
Q ss_pred cccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeec
Q 004354 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDM 125 (759)
Q Consensus 46 W~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~ 125 (759)
|-.. ..+.+++++... ++...|-|+|||.+.++..+. .+++ |...|.-. .+-.++.+|+
T Consensus 55 WP~n---Pvd~iI~~l~~~--~~~~viaD~GCGdA~la~~~~-~~~~-V~SfDLva--------------~n~~Vtacdi 113 (219)
T PF05148_consen 55 WPVN---PVDVIIEWLKKR--PKSLVIADFGCGDAKLAKAVP-NKHK-VHSFDLVA--------------PNPRVTACDI 113 (219)
T ss_dssp SSS----HHHHHHHHHCTS---TTS-EEEES-TT-HHHHH---S----EEEEESS---------------SSTTEEES-T
T ss_pred CCCC---cHHHHHHHHHhc--CCCEEEEECCCchHHHHHhcc-cCce-EEEeeccC--------------CCCCEEEecC
Confidence 6554 345566777641 345789999999999997653 3454 99999755 1124678999
Q ss_pred ccCC---CcccEEEeC-CCChhHHHHHHHHHHHhcccCcEEEEEEcCchh-hhhhhcccc-CCCceEEEEEeCCCCCCCC
Q 004354 126 TSMQ---GGLDALMEP-ELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH-VLGLLFPKF-RFGWKMSVHAIPQKSSSEP 199 (759)
Q Consensus 126 ~~~~---gtfD~Ii~~-~~~~~~~~~~l~ei~rvLkpGG~liiit~~~~~-~~~~l~~~~-~~~w~v~~~~~~~~~~~~~ 199 (759)
.+.| ++.|++++. ...-.....++.|+.|+|||||.+.+......- -...+.... ..||.+......+
T Consensus 114 a~vPL~~~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~~d~~n------ 187 (219)
T PF05148_consen 114 ANVPLEDESVDVAVFCLSLMGTNWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKSKDESN------ 187 (219)
T ss_dssp TS-S--TT-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEEEE--S------
T ss_pred ccCcCCCCceeEEEEEhhhhCCCcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEecccCC------
Confidence 9988 899988864 333445889999999999999999999864320 112222222 3377766543222
Q ss_pred CceEEEEEEEeCC
Q 004354 200 SLQTFMVVADKEN 212 (759)
Q Consensus 200 ~~~~f~~v~~K~~ 212 (759)
-..+++.++|..
T Consensus 188 -~~F~~f~F~K~~ 199 (219)
T PF05148_consen 188 -KHFVLFEFKKIR 199 (219)
T ss_dssp -TTEEEEEEEE-S
T ss_pred -CeEEEEEEEEcC
Confidence 234445556654
No 283
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.11 E-value=2.1e-05 Score=81.37 Aligned_cols=105 Identities=12% Similarity=0.135 Sum_probs=79.5
Q ss_pred CCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhcCCC-CCCCeEEEEccHHHHHHhhcccCccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSV 606 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~Fgl~-~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~ 606 (759)
...+||.||+|.|.++..+....| ..+++++|+++.+++.|++.+.-. ..+++.++.+|..+.. .
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~----------- 117 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALP--F----------- 117 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCC--C-----------
Confidence 347999999999999999988887 679999999999999999998431 2467899999875531 1
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEE
Q 004354 607 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 676 (759)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N 676 (759)
....||+|++...-. .+ + --..+|+.+.+.|+|||.+++.
T Consensus 118 --------------------~~~~~D~I~~~~~l~----~~---~---~~~~~l~~~~~~L~~gG~li~~ 157 (239)
T PRK00216 118 --------------------PDNSFDAVTIAFGLR----NV---P---DIDKALREMYRVLKPGGRLVIL 157 (239)
T ss_pred --------------------CCCCccEEEEecccc----cC---C---CHHHHHHHHHHhccCCcEEEEE
Confidence 135799998732111 11 1 1267999999999999987764
No 284
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.10 E-value=2.1e-05 Score=78.78 Aligned_cols=104 Identities=25% Similarity=0.343 Sum_probs=73.8
Q ss_pred hhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCC--C--------eEEEEeCCHHHHHHHHHHhccCC--CCcE
Q 004354 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF--H--------GITNVDFSKVVISDMLRRNVRDR--SDMR 119 (759)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~--~--------~VtgIDiS~~~I~~a~~r~~~~~--~~i~ 119 (759)
.+...+..+... .++..|||.-||+|.+..+.+..+. . .++|.|+++.+++.+++++...+ ..+.
T Consensus 15 ~lA~~ll~la~~---~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~ 91 (179)
T PF01170_consen 15 TLAAALLNLAGW---RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYID 91 (179)
T ss_dssp HHHHHHHHHTT-----TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEE
T ss_pred HHHHHHHHHhCC---CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceE
Confidence 455555555544 5678999999999999987765432 2 27899999999999999875543 3478
Q ss_pred EEEeecccCC---CcccEEEeCCC-----C-----hhHHHHHHHHHHHhccc
Q 004354 120 WRVMDMTSMQ---GGLDALMEPEL-----G-----HKLGNQYLSEVKRLLKS 158 (759)
Q Consensus 120 f~~~D~~~~~---gtfD~Ii~~~~-----~-----~~~~~~~l~ei~rvLkp 158 (759)
+.+.|+++++ +++|+|+++.. . ......+++++.++|++
T Consensus 92 ~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~ 143 (179)
T PF01170_consen 92 FIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP 143 (179)
T ss_dssp EEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT
T ss_pred EEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC
Confidence 9999999988 78999999751 1 12267888999999999
No 285
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.10 E-value=2.7e-05 Score=83.12 Aligned_cols=96 Identities=17% Similarity=0.194 Sum_probs=81.3
Q ss_pred CeEEEECCCcchhHHHHHHhC-CCeEEEEeCCHHHHHHHHHHhccC-----CCCcEEEEeecccCC----CcccEEEeCC
Q 004354 70 PQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRD-----RSDMRWRVMDMTSMQ----GGLDALMEPE 139 (759)
Q Consensus 70 ~~ILDlGCG~G~ls~~L~~~G-~~~VtgIDiS~~~I~~a~~r~~~~-----~~~i~f~~~D~~~~~----gtfD~Ii~~~ 139 (759)
.+||.||-|.|..+..+.+.. .++++.+||.+.+++.+++.+... .++++.+..|..++- .+||+|++..
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~ 157 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS 157 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC
Confidence 599999999999999999875 578999999999999999876432 378999999987765 6899999965
Q ss_pred CChhH------HHHHHHHHHHhcccCcEEEEE
Q 004354 140 LGHKL------GNQYLSEVKRLLKSGGKFVCL 165 (759)
Q Consensus 140 ~~~~~------~~~~l~ei~rvLkpGG~liii 165 (759)
....- -..+++.+++.|+++|.++.-
T Consensus 158 tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 158 TDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred CCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 33311 588999999999999999988
No 286
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.10 E-value=3.5e-05 Score=82.57 Aligned_cols=99 Identities=14% Similarity=0.165 Sum_probs=72.5
Q ss_pred CCCeEEEECCCcchhHHHH----HHh-CC----CeEEEEeCCHHHHHHHHHHhcc-------------------------
Q 004354 68 PPPQILVPGCGNSRLSEHL----YDA-GF----HGITNVDFSKVVISDMLRRNVR------------------------- 113 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L----~~~-G~----~~VtgIDiS~~~I~~a~~r~~~------------------------- 113 (759)
...+|+-.||+||.-...| .+. +. -+|+|+|||+.+|+.|++-.-.
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 3479999999999854333 332 11 1599999999999998774210
Q ss_pred -------CCCCcEEEEeecccCC----CcccEEEeCCCC----hhHHHHHHHHHHHhcccCcEEEEEE
Q 004354 114 -------DRSDMRWRVMDMTSMQ----GGLDALMEPELG----HKLGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 114 -------~~~~i~f~~~D~~~~~----gtfD~Ii~~~~~----~~~~~~~l~ei~rvLkpGG~liiit 166 (759)
-...++|.+.|+.+.+ +.||+|+|.+.. .....++++.+++.|+|||++++-.
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 0134789999988743 789999996632 3348999999999999999766543
No 287
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.09 E-value=4.9e-05 Score=84.52 Aligned_cols=116 Identities=13% Similarity=0.135 Sum_probs=78.3
Q ss_pred CeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeecccCC-------------------
Q 004354 70 PQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ------------------- 129 (759)
Q Consensus 70 ~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~-~~i~f~~~D~~~~~------------------- 129 (759)
.+|||++||+|.++..+++. +..|+|+|+|+.+++.+++++...+ .+++|+++|+.+.-
T Consensus 208 ~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~ 286 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKS 286 (362)
T ss_pred CeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccccC
Confidence 57999999999999988765 5679999999999999988875433 47899999987631
Q ss_pred CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEEcCchhhhhhhccccCCCceEEEEEe
Q 004354 130 GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAI 191 (759)
Q Consensus 130 gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit~~~~~~~~~l~~~~~~~w~v~~~~~ 191 (759)
..||+|+..+.-......+++.+.+ |+ .++.++..+....+.+.... .+|.+.....
T Consensus 287 ~~~D~v~lDPPR~G~~~~~l~~l~~---~~-~ivyvSC~p~tlarDl~~L~-~gY~l~~v~~ 343 (362)
T PRK05031 287 YNFSTIFVDPPRAGLDDETLKLVQA---YE-RILYISCNPETLCENLETLS-QTHKVERFAL 343 (362)
T ss_pred CCCCEEEECCCCCCCcHHHHHHHHc---cC-CEEEEEeCHHHHHHHHHHHc-CCcEEEEEEE
Confidence 1489999976422224555555544 44 46666665543333232221 2666555443
No 288
>PRK14967 putative methyltransferase; Provisional
Probab=98.09 E-value=1.7e-05 Score=82.01 Aligned_cols=127 Identities=14% Similarity=0.147 Sum_probs=82.0
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccc
Q 004354 530 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 609 (759)
Q Consensus 530 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~ 609 (759)
..+||.+|.|.|.++..+... +..++++||+++.+++.|++.+... ..++.++.+|..+++.
T Consensus 37 ~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~-~~~~~~~~~d~~~~~~---------------- 98 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLA-GVDVDVRRGDWARAVE---------------- 98 (223)
T ss_pred CCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHh-CCeeEEEECchhhhcc----------------
Confidence 468999999999998888765 4459999999999999999876321 2258899998765421
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEcCC-CCCCCCCCC--cCCCCC--------ChHHHHHHHHHccCcCcEEEEEec
Q 004354 610 NEITSNNTRSCNGNCTASNARVDILIIDVD-SPDSSSGMT--CPAADF--------VEGSFLLTVKDALSEQGLFIVNLV 678 (759)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~-s~d~~~g~s--cPp~~f--------~~~~fl~~~~~~L~~~Gilv~N~~ 678 (759)
...||+|+.+.- ......+.. -|...+ .-..+++.+.+.|++||.+++-..
T Consensus 99 ------------------~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~ 160 (223)
T PRK14967 99 ------------------FRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQS 160 (223)
T ss_pred ------------------CCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 257999999741 111000000 000000 125688899999999999886443
Q ss_pred CCChhHHHHHHHHHHH
Q 004354 679 SRSQATKDMVISRMKM 694 (759)
Q Consensus 679 ~~~~~~~~~v~~~l~~ 694 (759)
... ....++..+++
T Consensus 161 ~~~--~~~~~~~~l~~ 174 (223)
T PRK14967 161 ELS--GVERTLTRLSE 174 (223)
T ss_pred ccc--CHHHHHHHHHH
Confidence 222 12234555543
No 289
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.08 E-value=1.2e-05 Score=91.30 Aligned_cols=95 Identities=19% Similarity=0.220 Sum_probs=71.7
Q ss_pred CCeEEEECCCcchhHHHHHHhC-----CCeEEEEeCCHHHHHHHHHHhc--cCCCCcEEEEeecccCC--CcccEEEeCC
Q 004354 69 PPQILVPGCGNSRLSEHLYDAG-----FHGITNVDFSKVVISDMLRRNV--RDRSDMRWRVMDMTSMQ--GGLDALMEPE 139 (759)
Q Consensus 69 ~~~ILDlGCG~G~ls~~L~~~G-----~~~VtgIDiS~~~I~~a~~r~~--~~~~~i~f~~~D~~~~~--gtfD~Ii~~~ 139 (759)
+..|||||||+|-++...++.| ..+|++|+-|+.++...+++.. .....|+++++|+++.. ...|+|++--
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSEl 266 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSEL 266 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE--
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEec
Confidence 4679999999999998877765 3579999999998877666532 23467999999999998 7899999832
Q ss_pred ----CChhHHHHHHHHHHHhcccCcEEE
Q 004354 140 ----LGHKLGNQYLSEVKRLLKSGGKFV 163 (759)
Q Consensus 140 ----~~~~~~~~~l~ei~rvLkpGG~li 163 (759)
...+.....+....|.|||||.+|
T Consensus 267 LGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 267 LGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp -BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred cCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 223345667889999999999876
No 290
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.06 E-value=2.4e-05 Score=84.87 Aligned_cols=103 Identities=14% Similarity=0.161 Sum_probs=76.2
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 604 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~ 604 (759)
....++|.||+|.|.++..+.+.+|..+++++|+ |.+++.|+++. |+ .+|++++.+|+.+. ..
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl--~~rv~~~~~d~~~~--~~--------- 213 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGV--ADRMRGIAVDIYKE--SY--------- 213 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCc--cceEEEEecCccCC--CC---------
Confidence 4557999999999999999999999999999998 89999999875 44 57899999996542 11
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEE
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 676 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N 676 (759)
..+|+|++-- .+..-+.. ....+|+++.+.|+|||.|++-
T Consensus 214 ------------------------~~~D~v~~~~-------~lh~~~~~-~~~~il~~~~~~L~pgG~l~i~ 253 (306)
T TIGR02716 214 ------------------------PEADAVLFCR-------ILYSANEQ-LSTIMCKKAFDAMRSGGRLLIL 253 (306)
T ss_pred ------------------------CCCCEEEeEh-------hhhcCChH-HHHHHHHHHHHhcCCCCEEEEE
Confidence 2368887611 01000000 1145899999999999988654
No 291
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.05 E-value=2e-05 Score=79.98 Aligned_cols=103 Identities=14% Similarity=0.120 Sum_probs=70.4
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 608 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~ 608 (759)
.+.+||.+|.|.|.++.+|... ..+|++||++|.+++.|++...-. +-++++...|...+ ..
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~-~~~v~~~~~d~~~~--~~------------- 91 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARE-NLPLRTDAYDINAA--AL------------- 91 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHh-CCCceeEeccchhc--cc-------------
Confidence 4579999999999999999875 359999999999999998776211 11266666664322 01
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEE
Q 004354 609 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 676 (759)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N 676 (759)
..+||+|+.-. ....+ ++. .-..+++.+++.|+|||.+++.
T Consensus 92 -------------------~~~fD~I~~~~----~~~~~--~~~--~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 92 -------------------NEDYDFIFSTV----VFMFL--QAG--RVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred -------------------cCCCCEEEEec----ccccC--CHH--HHHHHHHHHHHHhCCCcEEEEE
Confidence 14699998611 00000 111 1257999999999999985443
No 292
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.05 E-value=3.4e-05 Score=76.28 Aligned_cols=99 Identities=18% Similarity=0.223 Sum_probs=74.6
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 608 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~ 608 (759)
...++|.||.|.|.++..+... ..++++||+|+.+++.+++.+.- .++++++.+|+.++.. .
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~--~~~v~ii~~D~~~~~~--~------------ 74 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAA--ADNLTVIHGDALKFDL--P------------ 74 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhcc--CCCEEEEECchhcCCc--c------------
Confidence 4468999999999999998887 46999999999999999999853 5689999999987621 1
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHc--cCcCcEEEEEe
Q 004354 609 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDA--LSEQGLFIVNL 677 (759)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~--L~~~Gilv~N~ 677 (759)
+..||.|+.++ |-+.. .+.+..+.+. +.++|+|++..
T Consensus 75 -------------------~~~~d~vi~n~------------Py~~~-~~~i~~~l~~~~~~~~~~l~~q~ 113 (169)
T smart00650 75 -------------------KLQPYKVVGNL------------PYNIS-TPILFKLLEEPPAFRDAVLMVQK 113 (169)
T ss_pred -------------------ccCCCEEEECC------------CcccH-HHHHHHHHhcCCCcceEEEEEEH
Confidence 23589998742 44433 4555555543 34788998875
No 293
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.04 E-value=6.1e-05 Score=83.45 Aligned_cols=116 Identities=11% Similarity=0.100 Sum_probs=78.6
Q ss_pred CeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeecccCC-------------------
Q 004354 70 PQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ------------------- 129 (759)
Q Consensus 70 ~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~-~~i~f~~~D~~~~~------------------- 129 (759)
.+|||+|||+|.++..|++. +..|+|+|+++.+++.+++++...+ .+++|+++|+.+..
T Consensus 199 ~~vlDl~~G~G~~sl~la~~-~~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 277 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQN-FRRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKS 277 (353)
T ss_pred CcEEEEeccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhcccccccccccccc
Confidence 47999999999999988766 5679999999999999998875443 46899999986532
Q ss_pred CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEEcCchhhhhhhccccCCCceEEEEEe
Q 004354 130 GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAI 191 (759)
Q Consensus 130 gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit~~~~~~~~~l~~~~~~~w~v~~~~~ 191 (759)
..||+|+..+.-......+++.+.+ | +.++.++..+..+.+.+-... .+|.+.-...
T Consensus 278 ~~~d~v~lDPPR~G~~~~~l~~l~~---~-~~ivYvsC~p~tlaRDl~~L~-~~Y~l~~v~~ 334 (353)
T TIGR02143 278 YNCSTIFVDPPRAGLDPDTCKLVQA---Y-ERILYISCNPETLKANLEQLS-ETHRVERFAL 334 (353)
T ss_pred CCCCEEEECCCCCCCcHHHHHHHHc---C-CcEEEEEcCHHHHHHHHHHHh-cCcEEEEEEE
Confidence 1279999976422224455555544 5 456666666554444433222 2355554443
No 294
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.04 E-value=6.3e-05 Score=78.09 Aligned_cols=109 Identities=12% Similarity=0.121 Sum_probs=80.6
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
....+||.||.|.|.+...+... ..+++++|+++.+++.|++.+... ..++.++..|..++....
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~------------ 111 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALES-GLKIDYRQTTAEELAAEH------------ 111 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHc-CCceEEEecCHHHhhhhc------------
Confidence 34578999999999988888765 358999999999999999887432 235788888887765332
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCC
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS 681 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~ 681 (759)
..+||+|++.-. ...+ + -...+|+.+.+.|+|||.+++....+.
T Consensus 112 --------------------~~~fD~Ii~~~~----l~~~---~---~~~~~l~~~~~~L~~gG~l~v~~~~~~ 155 (233)
T PRK05134 112 --------------------PGQFDVVTCMEM----LEHV---P---DPASFVRACAKLVKPGGLVFFSTLNRN 155 (233)
T ss_pred --------------------CCCccEEEEhhH----hhcc---C---CHHHHHHHHHHHcCCCcEEEEEecCCC
Confidence 257999998321 1111 1 125789999999999999998876543
No 295
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.03 E-value=3.5e-05 Score=79.20 Aligned_cols=129 Identities=17% Similarity=0.243 Sum_probs=86.6
Q ss_pred HHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC---Ccc
Q 004354 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ---GGL 132 (759)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~---gtf 132 (759)
.+++.+.. .+.+..|.|+|||.+.++. .-...|+..|+-+ .+-+++.+||.+.| ++.
T Consensus 170 ~ii~~ik~--r~~~~vIaD~GCGEakiA~----~~~~kV~SfDL~a--------------~~~~V~~cDm~~vPl~d~sv 229 (325)
T KOG3045|consen 170 VIIRKIKR--RPKNIVIADFGCGEAKIAS----SERHKVHSFDLVA--------------VNERVIACDMRNVPLEDESV 229 (325)
T ss_pred HHHHHHHh--CcCceEEEecccchhhhhh----ccccceeeeeeec--------------CCCceeeccccCCcCccCcc
Confidence 34444443 1456789999999999886 2234599999644 23467889999988 899
Q ss_pred cEEEeC-CCChhHHHHHHHHHHHhcccCcEEEEEEcCch--hhhhhhcccc-CCCceEEEEEeCCCCCCCCCceEEEEEE
Q 004354 133 DALMEP-ELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES--HVLGLLFPKF-RFGWKMSVHAIPQKSSSEPSLQTFMVVA 208 (759)
Q Consensus 133 D~Ii~~-~~~~~~~~~~l~ei~rvLkpGG~liiit~~~~--~~~~~l~~~~-~~~w~v~~~~~~~~~~~~~~~~~f~~v~ 208 (759)
|++++. ...-..+..++.+++|+|++||.+.+...... .+. .+.... ..||.+....+.+ -..++|.+
T Consensus 230 DvaV~CLSLMgtn~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~-~f~r~l~~lGF~~~~~d~~n-------~~F~lfef 301 (325)
T KOG3045|consen 230 DVAVFCLSLMGTNLADFIKEANRILKPGGLLYIAEVKSRFSDVK-GFVRALTKLGFDVKHKDVSN-------KYFTLFEF 301 (325)
T ss_pred cEEEeeHhhhcccHHHHHHHHHHHhccCceEEEEehhhhcccHH-HHHHHHHHcCCeeeehhhhc-------ceEEEEEE
Confidence 987754 34444588999999999999999999876432 222 233322 3477776655544 23555666
Q ss_pred EeCC
Q 004354 209 DKEN 212 (759)
Q Consensus 209 ~K~~ 212 (759)
.|..
T Consensus 302 kK~~ 305 (325)
T KOG3045|consen 302 KKTP 305 (325)
T ss_pred ecCC
Confidence 6643
No 296
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.02 E-value=3.7e-05 Score=80.70 Aligned_cols=98 Identities=13% Similarity=-0.010 Sum_probs=79.2
Q ss_pred CCCCeEEEECCCcchhHHHHHHh-C-CCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccCC----------Ccc
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ----------GGL 132 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~-G-~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~~----------gtf 132 (759)
....+|||||+++|.-+.+|+.. + -.+|+.+|+++...+.|++.+.+.+ .+++++.+|+.+.- ++|
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~f 157 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTF 157 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcc
Confidence 35679999999999999999865 1 1269999999999999988876543 67999999886641 489
Q ss_pred cEEEeCCCChhHHHHHHHHHHHhcccCcEEEEE
Q 004354 133 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 165 (759)
Q Consensus 133 D~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liii 165 (759)
|+|+.... ......+++.+.++|+|||.+++-
T Consensus 158 D~iFiDad-K~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 158 DFIFVDAD-KDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred cEEEecCC-HHHhHHHHHHHHHhcCCCeEEEEc
Confidence 99999764 344678899999999999997763
No 297
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.01 E-value=4.5e-05 Score=82.06 Aligned_cols=132 Identities=14% Similarity=0.233 Sum_probs=86.1
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC-CCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~-~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
...+||.+|.|+|.|++..... ...+|.+||+||..++.|+++..+. -.+++.++.. .
T Consensus 161 ~g~~vLDvG~GSGILaiaA~kl-GA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~---------~----------- 219 (295)
T PF06325_consen 161 PGKRVLDVGCGSGILAIAAAKL-GAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLS---------E----------- 219 (295)
T ss_dssp TTSEEEEES-TTSHHHHHHHHT-TBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCT---------S-----------
T ss_pred CCCEEEEeCCcHHHHHHHHHHc-CCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEe---------c-----------
Confidence 4469999999999999988887 3448999999999999999998332 1336655310 0
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChhHHHH
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDM 687 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~~~~~ 687 (759)
+....+||+|+..+...- -.+.+..+.++|+|||.|++-=+-. ...+.
T Consensus 220 -----------------~~~~~~~dlvvANI~~~v-------------L~~l~~~~~~~l~~~G~lIlSGIl~--~~~~~ 267 (295)
T PF06325_consen 220 -----------------DLVEGKFDLVVANILADV-------------LLELAPDIASLLKPGGYLILSGILE--EQEDE 267 (295)
T ss_dssp -----------------CTCCS-EEEEEEES-HHH-------------HHHHHHHCHHHEEEEEEEEEEEEEG--GGHHH
T ss_pred -----------------ccccccCCEEEECCCHHH-------------HHHHHHHHHHhhCCCCEEEEccccH--HHHHH
Confidence 011378999998664431 1456677788899999999764333 33356
Q ss_pred HHHHHHHhcCceEEEeecCCccEEEEEec
Q 004354 688 VISRMKMVFNHLFCLQLEEDVNLVLFGLS 716 (759)
Q Consensus 688 v~~~l~~vF~~v~~~~~~~~~N~Vl~a~~ 716 (759)
+.+.+++-| .........+++.+..+
T Consensus 268 v~~a~~~g~---~~~~~~~~~~W~~l~~~ 293 (295)
T PF06325_consen 268 VIEAYKQGF---ELVEEREEGEWVALVFK 293 (295)
T ss_dssp HHHHHHTTE---EEEEEEEETTEEEEEEE
T ss_pred HHHHHHCCC---EEEEEEEECCEEEEEEE
Confidence 777776522 23333345566655543
No 298
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.00 E-value=0.00016 Score=82.70 Aligned_cols=134 Identities=13% Similarity=0.189 Sum_probs=102.2
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCC-CcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCcccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPF-VGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDE 603 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~-~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~ 603 (759)
....+||.++.|-|+-+..|...+.+ ..|+++|+++.-++..++.+ |+ .++.+...|+..+-....
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~---~nv~v~~~D~~~~~~~~~------- 181 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGV---SNVALTHFDGRVFGAALP------- 181 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC---CeEEEEeCchhhhhhhch-------
Confidence 34568999999999999999988854 48999999999999988765 65 458999999987643322
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCC--------------ChHHHHHHHHHccCc
Q 004354 604 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF--------------VEGSFLLTVKDALSE 669 (759)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f--------------~~~~fl~~~~~~L~~ 669 (759)
..||.|++|+-.+. .||-.-.+.. +..++|..+.+.|+|
T Consensus 182 -------------------------~~fD~ILvDaPCSG--~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~Lkp 234 (470)
T PRK11933 182 -------------------------ETFDAILLDAPCSG--EGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKP 234 (470)
T ss_pred -------------------------hhcCeEEEcCCCCC--CcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 56999999996653 2332222211 247889999999999
Q ss_pred CcEEEEEecCCChhHHHHHHHHHHHhcCc
Q 004354 670 QGLFIVNLVSRSQATKDMVISRMKMVFNH 698 (759)
Q Consensus 670 ~Gilv~N~~~~~~~~~~~v~~~l~~vF~~ 698 (759)
||+||.-..+-..+.-+.+++.+.+-++.
T Consensus 235 GG~LVYSTCT~~~eENE~vV~~~L~~~~~ 263 (470)
T PRK11933 235 GGTLVYSTCTLNREENQAVCLWLKETYPD 263 (470)
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHHHCCC
Confidence 99999888777777777888877666664
No 299
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=97.99 E-value=7e-05 Score=83.82 Aligned_cols=105 Identities=17% Similarity=0.292 Sum_probs=76.6
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
....+||.||+|.|.++.++...+ ..+|++||+++.+++.|++... +..+++..+|..+. .
T Consensus 166 ~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~---~l~v~~~~~D~~~l----~----------- 226 (383)
T PRK11705 166 KPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCA---GLPVEIRLQDYRDL----N----------- 226 (383)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhc---cCeEEEEECchhhc----C-----------
Confidence 345699999999999999998875 4599999999999999998762 22478888885432 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCC
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 680 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~ 680 (759)
..||+|+. +..-.. + +.. .-..+++.+.+.|+|||.+++-.+..
T Consensus 227 ---------------------~~fD~Ivs-~~~~eh---v--g~~--~~~~~l~~i~r~LkpGG~lvl~~i~~ 270 (383)
T PRK11705 227 ---------------------GQFDRIVS-VGMFEH---V--GPK--NYRTYFEVVRRCLKPDGLFLLHTIGS 270 (383)
T ss_pred ---------------------CCCCEEEE-eCchhh---C--ChH--HHHHHHHHHHHHcCCCcEEEEEEccC
Confidence 46999975 100000 0 000 11579999999999999999876544
No 300
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=97.99 E-value=4.3e-05 Score=79.95 Aligned_cols=98 Identities=14% Similarity=0.189 Sum_probs=72.0
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
....+|+.||+|.|.++..+...+|+++++++|+ |.|++.|++ .+|++++-+|-. ....
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~------~~rv~~~~gd~f---~~~P----------- 157 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE------ADRVEFVPGDFF---DPLP----------- 157 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH------TTTEEEEES-TT---TCCS-----------
T ss_pred cCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc------ccccccccccHH---hhhc-----------
Confidence 4567899999999999999999999999999999 999999999 689999999854 3322
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcC--cEEEEE
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQ--GLFIVN 676 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~--Gilv~N 676 (759)
. +|+|++ ..-.... |+. -....|++++..|+|| |.|+|.
T Consensus 158 ---------------------~-~D~~~l----~~vLh~~--~d~--~~~~iL~~~~~al~pg~~g~llI~ 198 (241)
T PF00891_consen 158 ---------------------V-ADVYLL----RHVLHDW--SDE--DCVKILRNAAAALKPGKDGRLLII 198 (241)
T ss_dssp ---------------------S-ESEEEE----ESSGGGS---HH--HHHHHHHHHHHHSEECTTEEEEEE
T ss_pred ---------------------c-ccceee----ehhhhhc--chH--HHHHHHHHHHHHhCCCCCCeEEEE
Confidence 3 999998 2100000 000 1256899999999998 866554
No 301
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.98 E-value=0.00011 Score=79.97 Aligned_cols=99 Identities=14% Similarity=0.101 Sum_probs=74.7
Q ss_pred CCCCeEEEECCCcchhHHHHHHh----C-CCeEEEEeCCHHHHHHHHHHhc-cCCCCcEE--EEeecccCC---------
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDA----G-FHGITNVDFSKVVISDMLRRNV-RDRSDMRW--RVMDMTSMQ--------- 129 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~----G-~~~VtgIDiS~~~I~~a~~r~~-~~~~~i~f--~~~D~~~~~--------- 129 (759)
.++..|+|+|||+|+-+..|++. + ...++++|+|..+++.+.+++. ...|.+++ +++|.++.-
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~ 154 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENR 154 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhccccccc
Confidence 35668999999999987776653 1 2359999999999999999887 56677766 788886531
Q ss_pred CcccEEEeCC-----CChhHHHHHHHHHHH-hcccCcEEEEE
Q 004354 130 GGLDALMEPE-----LGHKLGNQYLSEVKR-LLKSGGKFVCL 165 (759)
Q Consensus 130 gtfD~Ii~~~-----~~~~~~~~~l~ei~r-vLkpGG~liii 165 (759)
....+++... ..+.....+|+++++ .|+|||.|++-
T Consensus 155 ~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG 196 (319)
T TIGR03439 155 SRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIG 196 (319)
T ss_pred CCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEe
Confidence 2356666532 234458899999999 99999987764
No 302
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=97.98 E-value=3.7e-05 Score=82.05 Aligned_cols=94 Identities=13% Similarity=0.249 Sum_probs=71.6
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCC---CcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPF---VGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMS 605 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~---~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~ 605 (759)
...+||.||.|+|.++..|...+|. ..+++||+++.+++.|++.+ +++.++++|+.+. .
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-----~~~~~~~~d~~~l----p--------- 146 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-----PQVTFCVASSHRL----P--------- 146 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-----CCCeEEEeecccC----C---------
Confidence 4468999999999999888877764 37999999999999998875 3588899986542 1
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 004354 606 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 677 (759)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~ 677 (759)
..+..||+|+. +++ +.+++.+++.|+|||.|++-.
T Consensus 147 --------------------~~~~sfD~I~~-~~~----------------~~~~~e~~rvLkpgG~li~~~ 181 (272)
T PRK11088 147 --------------------FADQSLDAIIR-IYA----------------PCKAEELARVVKPGGIVITVT 181 (272)
T ss_pred --------------------CcCCceeEEEE-ecC----------------CCCHHHHHhhccCCCEEEEEe
Confidence 11367999985 111 124577899999999998754
No 303
>PHA03412 putative methyltransferase; Provisional
Probab=97.97 E-value=4.2e-05 Score=79.14 Aligned_cols=57 Identities=23% Similarity=0.163 Sum_probs=48.1
Q ss_pred CCeEEEEcccccHHHHHHHHhC---CCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHH
Q 004354 530 SVKAVVIGLGAGLLPMFLHECM---PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF 591 (759)
Q Consensus 530 ~~~vLviGlG~G~l~~~L~~~~---p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~ 591 (759)
..+||.+|.|+|.++..+.+.+ +..+|++||||+.++++|++.+ +++.++.+|...+
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~-----~~~~~~~~D~~~~ 109 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV-----PEATWINADALTT 109 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc-----cCCEEEEcchhcc
Confidence 5699999999999999888764 3469999999999999999774 3588999997653
No 304
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=97.96 E-value=0.00011 Score=75.99 Aligned_cols=124 Identities=15% Similarity=0.180 Sum_probs=94.8
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccc
Q 004354 530 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 609 (759)
Q Consensus 530 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~ 609 (759)
.+-+|.||.|.|.....++...|+..+.+||+-..++..|-+...-..-++++++..||.+++.....
T Consensus 49 ~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~------------ 116 (227)
T COG0220 49 APIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIP------------ 116 (227)
T ss_pred CcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCC------------
Confidence 36799999999999999999999999999999999999988887322223899999999999998761
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChhHHHH
Q 004354 610 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDM 687 (759)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~~~~~ 687 (759)
++..|-|.+-- +||..-.---=..++.++|++.+.+.|+|||.|-+- +....+.+.
T Consensus 117 ------------------~~sl~~I~i~F--PDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~a--TD~~~y~e~ 172 (227)
T COG0220 117 ------------------DGSLDKIYINF--PDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFA--TDNEEYFEW 172 (227)
T ss_pred ------------------CCCeeEEEEEC--CCCCCCccccccccCCHHHHHHHHHHccCCCEEEEE--ecCHHHHHH
Confidence 34788888833 343211100013489999999999999999998843 455665544
No 305
>PLN02672 methionine S-methyltransferase
Probab=97.96 E-value=8.8e-05 Score=91.59 Aligned_cols=121 Identities=12% Similarity=0.180 Sum_probs=85.6
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC---C-------------CCCCeEEEEccHHHHHH
Q 004354 530 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF---T-------------QDKSLKVHITDGIKFVR 593 (759)
Q Consensus 530 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl---~-------------~~~rl~v~i~Da~~~l~ 593 (759)
..+||.||.|.|+++..|...+|..+|++||++|.++++|++.... . ..+|++++.+|..+.+.
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 3589999999999999999998888999999999999999888632 1 12589999999887653
Q ss_pred hhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCC---CCCCCCCCC------c---------CCCCCC
Q 004354 594 EMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVD---SPDSSSGMT------C---------PAADFV 655 (759)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~---s~d~~~g~s------c---------Pp~~f~ 655 (759)
.. ..+||+|+.-.- .++. ..|+ - |...+.
T Consensus 199 ~~--------------------------------~~~fDlIVSNPPYI~~~e~-~~l~~eV~~~ep~~~~~~~~p~~AL~ 245 (1082)
T PLN02672 199 DN--------------------------------NIELDRIVGCIPQILNPNP-EAMSKLVTENASEEFLYSLSNYCALQ 245 (1082)
T ss_pred cc--------------------------------CCceEEEEECCCcCCCcch-hhcChhhhhccccccccccCcccccc
Confidence 21 136999986321 0000 0110 0 112222
Q ss_pred h-----------HHHHHHHHHccCcCcEEEEEecCCChh
Q 004354 656 E-----------GSFLLTVKDALSEQGLFIVNLVSRSQA 683 (759)
Q Consensus 656 ~-----------~~fl~~~~~~L~~~Gilv~N~~~~~~~ 683 (759)
. ..++..+.+.|+|||.+++++-.+..+
T Consensus 246 g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG~~q~~ 284 (1082)
T PLN02672 246 GFVEDQFGLGLIARAVEEGISVIKPMGIMIFNMGGRPGQ 284 (1082)
T ss_pred CCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHH
Confidence 2 567788888999999999999655443
No 306
>PHA03411 putative methyltransferase; Provisional
Probab=97.95 E-value=6.3e-05 Score=79.53 Aligned_cols=110 Identities=15% Similarity=0.137 Sum_probs=78.8
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccc
Q 004354 530 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 609 (759)
Q Consensus 530 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~ 609 (759)
..+||.+|.|.|.++..+....+..+|++||++|.+++.|++.+ ++++++.+|+.++..
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~-----~~v~~v~~D~~e~~~---------------- 123 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL-----PEAEWITSDVFEFES---------------- 123 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-----cCCEEEECchhhhcc----------------
Confidence 46899999999999888877766679999999999999999864 368999999988742
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEcCC-CCCC---CCCCCcC------CCCCC-hHHHHHHHHHccCcCcEEEEEec
Q 004354 610 NEITSNNTRSCNGNCTASNARVDILIIDVD-SPDS---SSGMTCP------AADFV-EGSFLLTVKDALSEQGLFIVNLV 678 (759)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~-s~d~---~~g~scP------p~~f~-~~~fl~~~~~~L~~~Gilv~N~~ 678 (759)
..+||+||.+.- .... ...+ .+ .-..+ -..|+..+...|.|+|.+.+-..
T Consensus 124 ------------------~~kFDlIIsNPPF~~l~~~d~~~~-~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ys 184 (279)
T PHA03411 124 ------------------NEKFDVVISNPPFGKINTTDTKDV-FEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYS 184 (279)
T ss_pred ------------------cCCCcEEEEcCCccccCchhhhhh-hhhccCccccccccHHHHHhhhHheecCCceEEEEEe
Confidence 146999998541 1100 0000 00 00112 26789999999999997766554
Q ss_pred C
Q 004354 679 S 679 (759)
Q Consensus 679 ~ 679 (759)
+
T Consensus 185 s 185 (279)
T PHA03411 185 G 185 (279)
T ss_pred c
Confidence 3
No 307
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=97.95 E-value=4.6e-05 Score=77.08 Aligned_cols=111 Identities=14% Similarity=0.105 Sum_probs=78.1
Q ss_pred hhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCC-CeEEEEeCCHHHHHHHHHHhcc-CCCCc-EEEEeecccC
Q 004354 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVR-DRSDM-RWRVMDMTSM 128 (759)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~-~~VtgIDiS~~~I~~a~~r~~~-~~~~i-~f~~~D~~~~ 128 (759)
-+...+.+++.. .+.+|||||||||..+.+++..-. -...-.|..+..+....+.... ..+++ .-+..|++..
T Consensus 13 pIl~vL~~~l~~----~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~ 88 (204)
T PF06080_consen 13 PILEVLKQYLPD----SGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAP 88 (204)
T ss_pred HHHHHHHHHhCc----cCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCC
Confidence 455677777753 233699999999999999998722 1366778888776544443322 22332 3456777665
Q ss_pred C-----------CcccEEEeCCCChh----HHHHHHHHHHHhcccCcEEEEEE
Q 004354 129 Q-----------GGLDALMEPELGHK----LGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 129 ~-----------gtfD~Ii~~~~~~~----~~~~~l~ei~rvLkpGG~liiit 166 (759)
. +.||+|+|.+..|- ..+.+|+.+.++|++||.|++..
T Consensus 89 ~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YG 141 (204)
T PF06080_consen 89 PWPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYG 141 (204)
T ss_pred CCccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeC
Confidence 3 38999999875442 28999999999999999988753
No 308
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=97.95 E-value=2e-05 Score=83.78 Aligned_cols=45 Identities=36% Similarity=0.476 Sum_probs=38.3
Q ss_pred CCCCeEEEEccccc----HHHHHHHHhCC-----CCcEEEEEcCHHHHHHHHhh
Q 004354 528 GKSVKAVVIGLGAG----LLPMFLHECMP-----FVGIEAVELDLTMLNLAEDY 572 (759)
Q Consensus 528 ~~~~~vLviGlG~G----~l~~~L~~~~p-----~~~i~~VEiDp~v~~vA~~~ 572 (759)
+.+.+|+.+|+|+| ++++.|.+.++ ..+|+++|+|+.+++.|++-
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~ 151 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAG 151 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcC
Confidence 45679999999999 47788887765 46899999999999999974
No 309
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=97.94 E-value=6.8e-06 Score=84.94 Aligned_cols=102 Identities=19% Similarity=0.277 Sum_probs=71.6
Q ss_pred CeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC--CCC----CeEEEEccHHHHHHhhcccCccccc
Q 004354 531 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT--QDK----SLKVHITDGIKFVREMKSSSATDEM 604 (759)
Q Consensus 531 ~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~--~~~----rl~v~i~Da~~~l~~~~~~~~~~~~ 604 (759)
.+||.+|+|||.|..-|.+.- ..|++||+.+.++++|+++-.+. .+. |++..+.|+-.
T Consensus 91 ~~ilDvGCGgGLLSepLArlg--a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~-------------- 154 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARLG--AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEG-------------- 154 (282)
T ss_pred ceEEEeccCccccchhhHhhC--CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhh--------------
Confidence 679999999999999888873 79999999999999999994331 111 23333332211
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCC
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 680 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~ 680 (759)
...+||+|++ .+...-+--| .+|+..+.++|+|+|.+++-.+.|
T Consensus 155 ----------------------~~~~fDaVvc----sevleHV~dp------~~~l~~l~~~lkP~G~lfittinr 198 (282)
T KOG1270|consen 155 ----------------------LTGKFDAVVC----SEVLEHVKDP------QEFLNCLSALLKPNGRLFITTINR 198 (282)
T ss_pred ----------------------cccccceeee----HHHHHHHhCH------HHHHHHHHHHhCCCCceEeeehhh
Confidence 1356999997 2210000001 789999999999999998876655
No 310
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.94 E-value=0.00013 Score=73.68 Aligned_cols=108 Identities=11% Similarity=0.030 Sum_probs=78.2
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC-CCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004354 530 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSVVH 608 (759)
Q Consensus 530 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~-~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~ 608 (759)
..++|.++.|+|++...+..... ..|++||+|+..++++++.+... ..++++++.+|+.+++.....
T Consensus 50 g~~vLDLfaGsG~lglea~srga-~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~----------- 117 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSRGA-KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAK----------- 117 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhc-----------
Confidence 46899999999999988887743 48999999999999999887221 135799999999999865431
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHH--ccCcCcEEEEEec
Q 004354 609 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKD--ALSEQGLFIVNLV 678 (759)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~--~L~~~Gilv~N~~ 678 (759)
....||+|++|..=. .-...+.++.+.+ .|+++|++|+--.
T Consensus 118 ------------------~~~~~dvv~~DPPy~-----------~~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 118 ------------------KPTFDNVIYLDPPFF-----------NGALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred ------------------cCCCceEEEECcCCC-----------CCcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 113589999964221 1123455555544 6899999997653
No 311
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=97.94 E-value=4.8e-05 Score=77.78 Aligned_cols=126 Identities=13% Similarity=0.139 Sum_probs=83.2
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
+.+.+||.||+|+|.+...|...+|..++++||+++.+++.|++++ ++++++.+|+.+. .
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~-----~~~~~~~~d~~~~---~------------ 101 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL-----PNINIIQGSLFDP---F------------ 101 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC-----CCCcEEEeeccCC---C------------
Confidence 4557899999999999999998888889999999999999999875 2477888886541 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCC------
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS------ 681 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~------ 681 (759)
.+.+||+|+.. ....-+ +|.. -..+++.+.+.++ +-+++.....+.
T Consensus 102 -------------------~~~sfD~V~~~----~vL~hl--~p~~--~~~~l~el~r~~~-~~v~i~e~~~~~~~~~~y 153 (204)
T TIGR03587 102 -------------------KDNFFDLVLTK----GVLIHI--NPDN--LPTAYRELYRCSN-RYILIAEYYNPSPVEISY 153 (204)
T ss_pred -------------------CCCCEEEEEEC----ChhhhC--CHHH--HHHHHHHHHhhcC-cEEEEEEeeCCCceeeee
Confidence 13679999971 111011 1211 1457777777763 345555543321
Q ss_pred -----hhHHHHHHHHHHHhcCceEE
Q 004354 682 -----QATKDMVISRMKMVFNHLFC 701 (759)
Q Consensus 682 -----~~~~~~v~~~l~~vF~~v~~ 701 (759)
.-.++.....+-+.|+.+-.
T Consensus 154 ~~~~~~~~~~d~~~~~~~~~~~l~~ 178 (204)
T TIGR03587 154 RGNSGRLWKRDFAGEMMDRYPDLKL 178 (204)
T ss_pred eCCcchhhhhhHHHHHHHhCCccee
Confidence 11234455667777886433
No 312
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=97.93 E-value=6.2e-05 Score=77.48 Aligned_cols=108 Identities=12% Similarity=0.135 Sum_probs=79.0
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 608 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~ 608 (759)
...+||.||.|.|.+...+.... .+++++|+++.+++.|++.+.-....++++..+|+.++....
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~------------- 109 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG--ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKG------------- 109 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCC-------------
Confidence 46799999999999888777653 469999999999999999875322226888999987774321
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCC
Q 004354 609 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 680 (759)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~ 680 (759)
..+||+|++.-.- .... -...+|+.+.+.|++||.+++....+
T Consensus 110 -------------------~~~~D~i~~~~~l----~~~~------~~~~~l~~~~~~L~~gG~l~i~~~~~ 152 (224)
T TIGR01983 110 -------------------AKSFDVVTCMEVL----EHVP------DPQAFIRACAQLLKPGGILFFSTINR 152 (224)
T ss_pred -------------------CCCccEEEehhHH----HhCC------CHHHHHHHHHHhcCCCcEEEEEecCC
Confidence 2579999973110 0011 12579999999999999988766543
No 313
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=4.7e-05 Score=76.26 Aligned_cols=110 Identities=15% Similarity=0.220 Sum_probs=81.4
Q ss_pred hhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh-CC--CeEEEEeCCHHHHHHHHHHhccC-----------CCC
Q 004354 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GF--HGITNVDFSKVVISDMLRRNVRD-----------RSD 117 (759)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~-G~--~~VtgIDiS~~~I~~a~~r~~~~-----------~~~ 117 (759)
.+...+.+++.. ...|+.+.||+|.|+|.++..++.. |. .+.+|||.-+..++..++++.+. ..+
T Consensus 67 ~mha~~le~L~~-~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~ 145 (237)
T KOG1661|consen 67 HMHATALEYLDD-HLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGE 145 (237)
T ss_pred HHHHHHHHHHHH-hhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCc
Confidence 344444455441 0157899999999999999888754 32 34599999999999998887543 246
Q ss_pred cEEEEeecccCC---CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEE
Q 004354 118 MRWRVMDMTSMQ---GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 118 i~f~~~D~~~~~---gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit 166 (759)
+.++++|..... ..||+|.|.... ....+++...|++||++++--
T Consensus 146 l~ivvGDgr~g~~e~a~YDaIhvGAaa----~~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 146 LSIVVGDGRKGYAEQAPYDAIHVGAAA----SELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred eEEEeCCccccCCccCCcceEEEccCc----cccHHHHHHhhccCCeEEEee
Confidence 788999988766 899999998654 345566677899999988764
No 314
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=97.92 E-value=3.7e-05 Score=79.09 Aligned_cols=104 Identities=13% Similarity=0.066 Sum_probs=72.4
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC------------CCCCeEEEEccHHHHHHhhc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT------------QDKSLKVHITDGIKFVREMK 596 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~------------~~~rl~v~i~Da~~~l~~~~ 596 (759)
...+||++|+|.|--+.+|..+ ...|++||++|..++.|.+.-|+. ...+++++++|..++-...
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~- 110 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD- 110 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc-
Confidence 3469999999999999999876 459999999999999875554442 2357888899876652110
Q ss_pred ccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEE
Q 004354 597 SSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFI 674 (759)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv 674 (759)
...||.|+- ... +.+-|+. .-..+++.+.++|+|||.++
T Consensus 111 -------------------------------~~~fD~i~D-~~~------~~~l~~~-~R~~~~~~l~~lLkpgG~~l 149 (213)
T TIGR03840 111 -------------------------------LGPVDAVYD-RAA------LIALPEE-MRQRYAAHLLALLPPGARQL 149 (213)
T ss_pred -------------------------------CCCcCEEEe-chh------hccCCHH-HHHHHHHHHHHHcCCCCeEE
Confidence 146888753 111 1111222 23569999999999999533
No 315
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=97.91 E-value=0.00013 Score=77.97 Aligned_cols=164 Identities=13% Similarity=0.150 Sum_probs=102.2
Q ss_pred cceeecCCc-cchHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHh
Q 004354 493 NQLKVYHGY-LASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAED 571 (759)
Q Consensus 493 ~~~~~d~~~-L~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~ 571 (759)
..+++||+. ...-+|-.-...+-++.... ..+.+||.+|+|.|.|+...... ...++.++|+||.-+++|++
T Consensus 131 ~~i~lDPGlAFGTG~HpTT~lcL~~Le~~~------~~g~~vlDvGcGSGILaIAa~kL-GA~~v~g~DiDp~AV~aa~e 203 (300)
T COG2264 131 LNIELDPGLAFGTGTHPTTSLCLEALEKLL------KKGKTVLDVGCGSGILAIAAAKL-GAKKVVGVDIDPQAVEAARE 203 (300)
T ss_pred eEEEEccccccCCCCChhHHHHHHHHHHhh------cCCCEEEEecCChhHHHHHHHHc-CCceEEEecCCHHHHHHHHH
Confidence 457788873 33444533222232322221 36789999999999999877776 34589999999999999999
Q ss_pred hcCCCCCC-CeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcC
Q 004354 572 YFGFTQDK-SLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCP 650 (759)
Q Consensus 572 ~Fgl~~~~-rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scP 650 (759)
..-+..-+ ..++-..+..+. ....+||+|+..+-.. +
T Consensus 204 Na~~N~v~~~~~~~~~~~~~~----------------------------------~~~~~~DvIVANILA~-v------- 241 (300)
T COG2264 204 NARLNGVELLVQAKGFLLLEV----------------------------------PENGPFDVIVANILAE-V------- 241 (300)
T ss_pred HHHHcCCchhhhcccccchhh----------------------------------cccCcccEEEehhhHH-H-------
Confidence 98542111 111111111111 1236899999866332 1
Q ss_pred CCCCChHHHHHHHHHccCcCcEEEEEecCCChhHHHHHHHHH-HHhcCceEEEeecCCccEEEEEe
Q 004354 651 AADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVISRM-KMVFNHLFCLQLEEDVNLVLFGL 715 (759)
Q Consensus 651 p~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l-~~vF~~v~~~~~~~~~N~Vl~a~ 715 (759)
-..+...++++|+|||.+++-=+-.+. .++|.+.+ ++-|..+-... ...++.+..
T Consensus 242 -----l~~La~~~~~~lkpgg~lIlSGIl~~q--~~~V~~a~~~~gf~v~~~~~---~~eW~~i~~ 297 (300)
T COG2264 242 -----LVELAPDIKRLLKPGGRLILSGILEDQ--AESVAEAYEQAGFEVVEVLE---REEWVAIVG 297 (300)
T ss_pred -----HHHHHHHHHHHcCCCceEEEEeehHhH--HHHHHHHHHhCCCeEeEEEe---cCCEEEEEE
Confidence 147888999999999999976543333 46777777 44666554443 234555544
No 316
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=97.91 E-value=2e-05 Score=79.21 Aligned_cols=102 Identities=15% Similarity=0.100 Sum_probs=75.7
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccCC-------CcccEEEeC
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ-------GGLDALMEP 138 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~~-------gtfD~Ii~~ 138 (759)
.+.++||+-||+|.++.+.+.+|.+.|+.||.++.+++.+++++.... ..+..++.|+...- ..||+|+..
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflD 121 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLD 121 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE-
T ss_pred CCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEEC
Confidence 578999999999999999999999999999999999999988875433 24788888854332 689999997
Q ss_pred CCChh-H-HHHHHHHHH--HhcccCcEEEEEEcCc
Q 004354 139 ELGHK-L-GNQYLSEVK--RLLKSGGKFVCLTLAE 169 (759)
Q Consensus 139 ~~~~~-~-~~~~l~ei~--rvLkpGG~liiit~~~ 169 (759)
+.... . ...++..+. .+|+++|.+++-+...
T Consensus 122 PPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 122 PPYAKGLYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp -STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred CCcccchHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 64332 2 377777776 7999999988877543
No 317
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.91 E-value=3.7e-05 Score=87.45 Aligned_cols=123 Identities=20% Similarity=0.226 Sum_probs=79.2
Q ss_pred HHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhC----CCCcEEEEEcCHHHHHHHHhh---cCCCC
Q 004354 505 SYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECM----PFVGIEAVELDLTMLNLAEDY---FGFTQ 577 (759)
Q Consensus 505 ~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~----p~~~i~~VEiDp~v~~vA~~~---Fgl~~ 577 (759)
.|.+||..++.=.. .......+...||+||.|.|.|.++..++. ...+|.+||.+|..+...++. =|+
T Consensus 165 ~Ye~AI~~al~D~~---~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w-- 239 (448)
T PF05185_consen 165 QYERAIEEALKDRV---RKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGW-- 239 (448)
T ss_dssp HHHHHHHHHHHHHH---TTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTT--
T ss_pred HHHHHHHHHHHhhh---hhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCC--
Confidence 47777765543211 110000134679999999999998877664 346999999999766655433 244
Q ss_pred CCCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChH
Q 004354 578 DKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEG 657 (759)
Q Consensus 578 ~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~ 657 (759)
+++++|+.+|.+++ +. ..++|+||.-+-.+-. -.+ +.+
T Consensus 240 ~~~V~vi~~d~r~v--~l--------------------------------pekvDIIVSElLGsfg-------~nE-l~p 277 (448)
T PF05185_consen 240 GDKVTVIHGDMREV--EL--------------------------------PEKVDIIVSELLGSFG-------DNE-LSP 277 (448)
T ss_dssp TTTEEEEES-TTTS--CH--------------------------------SS-EEEEEE---BTTB-------TTT-SHH
T ss_pred CCeEEEEeCcccCC--CC--------------------------------CCceeEEEEeccCCcc-------ccc-cCH
Confidence 67899999998776 11 2589999987654321 122 447
Q ss_pred HHHHHHHHccCcCcEEE
Q 004354 658 SFLLTVKDALSEQGLFI 674 (759)
Q Consensus 658 ~fl~~~~~~L~~~Gilv 674 (759)
|.|..+.+.|+|+|+++
T Consensus 278 E~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 278 ECLDAADRFLKPDGIMI 294 (448)
T ss_dssp HHHHHGGGGEEEEEEEE
T ss_pred HHHHHHHhhcCCCCEEe
Confidence 88999999999999988
No 318
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=97.91 E-value=8.8e-05 Score=82.47 Aligned_cols=116 Identities=14% Similarity=0.116 Sum_probs=83.7
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCC-cEEEEEcCHHHHHHHHhhcCCC--CCCCeEEEEccHHHHHHhhcccCccccccc
Q 004354 530 SVKAVVIGLGAGLLPMFLHECMPFV-GIEAVELDLTMLNLAEDYFGFT--QDKSLKVHITDGIKFVREMKSSSATDEMSV 606 (759)
Q Consensus 530 ~~~vLviGlG~G~l~~~L~~~~p~~-~i~~VEiDp~v~~vA~~~Fgl~--~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~ 606 (759)
.++||-+=.=+|+.+.+.... ++ +++.||++...++.|++++.+. ..++.+++++|+.+|+++...
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~g--GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~--------- 286 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALG--GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAER--------- 286 (393)
T ss_pred CCeEEEecccCcHHHHHHHhc--CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHh---------
Confidence 579999999999887555544 44 9999999999999999999553 356799999999999999762
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 004354 607 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 677 (759)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~ 677 (759)
.+.+||+||+|.-+=.-+..+. ....=--...+..+.++|+|||++++-.
T Consensus 287 --------------------~g~~fDlIilDPPsF~r~k~~~-~~~~rdy~~l~~~~~~iL~pgG~l~~~s 336 (393)
T COG1092 287 --------------------RGEKFDLIILDPPSFARSKKQE-FSAQRDYKDLNDLALRLLAPGGTLVTSS 336 (393)
T ss_pred --------------------cCCcccEEEECCcccccCcccc-hhHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 3568999999863321111110 0000002356677889999999888644
No 319
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=97.90 E-value=3.4e-05 Score=83.01 Aligned_cols=101 Identities=14% Similarity=0.174 Sum_probs=72.1
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccc
Q 004354 530 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 609 (759)
Q Consensus 530 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~ 609 (759)
+.+||.||+|.|.++.+|... ..+|++||+++.+++.|++...-. .-++++...|....- .
T Consensus 121 ~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~-~l~v~~~~~D~~~~~--~-------------- 181 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKE-NLNIRTGLYDINSAS--I-------------- 181 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHc-CCceEEEEechhccc--c--------------
Confidence 459999999999999998875 469999999999999998876321 125788888754320 0
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEE
Q 004354 610 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 675 (759)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~ 675 (759)
..+||+|+.-. .. +..++. .-..+++.+.+.|+|||++++
T Consensus 182 ------------------~~~fD~I~~~~----vl--~~l~~~--~~~~~l~~~~~~LkpgG~~l~ 221 (287)
T PRK12335 182 ------------------QEEYDFILSTV----VL--MFLNRE--RIPAIIKNMQEHTNPGGYNLI 221 (287)
T ss_pred ------------------cCCccEEEEcc----hh--hhCCHH--HHHHHHHHHHHhcCCCcEEEE
Confidence 25799998721 00 000111 125789999999999998654
No 320
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.89 E-value=3.4e-05 Score=81.19 Aligned_cols=99 Identities=20% Similarity=0.252 Sum_probs=77.7
Q ss_pred CCCeEEEECCCcchhHHHHHHhC-CCeEEEEeCCHHHHHHHHHHhcc-----CCCCcEEEEeecccCC----C-cccEEE
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVR-----DRSDMRWRVMDMTSMQ----G-GLDALM 136 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G-~~~VtgIDiS~~~I~~a~~r~~~-----~~~~i~f~~~D~~~~~----g-tfD~Ii 136 (759)
...+||-||-|.|..+..+.+.. ..+|+.+|+++.+++.+++.+.. ..++++++..|....- . +||+|+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi 155 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVII 155 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEE
Confidence 57899999999999999998764 56899999999999999876532 3578999999986654 5 899999
Q ss_pred eCCCCh-----hH-HHHHHHHHHHhcccCcEEEEEE
Q 004354 137 EPELGH-----KL-GNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 137 ~~~~~~-----~~-~~~~l~ei~rvLkpGG~liiit 166 (759)
...... .. -..+++.+++.|+|||.+++-.
T Consensus 156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 156 VDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 844221 11 5789999999999999999875
No 321
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=97.88 E-value=5.6e-05 Score=82.22 Aligned_cols=75 Identities=13% Similarity=0.141 Sum_probs=54.1
Q ss_pred CCCeEEEECCCcchhHHHHHHhCC-CeEEEEeCCHHHHHHHHHHhccC-C--CCcEEEE-eecccC-------CCcccEE
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRD-R--SDMRWRV-MDMTSM-------QGGLDAL 135 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~-~~VtgIDiS~~~I~~a~~r~~~~-~--~~i~f~~-~D~~~~-------~gtfD~I 135 (759)
...++||||||+|.+...|+..-+ .+++|+|+++.+++.|++++... . ..+++.+ .|..+. .+.||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 457999999999988877765422 36999999999999999887554 2 3466653 332221 1589999
Q ss_pred EeCCCCh
Q 004354 136 MEPELGH 142 (759)
Q Consensus 136 i~~~~~~ 142 (759)
+|+...+
T Consensus 194 vcNPPf~ 200 (321)
T PRK11727 194 LCNPPFH 200 (321)
T ss_pred EeCCCCc
Confidence 9987443
No 322
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=97.87 E-value=0.00021 Score=77.44 Aligned_cols=113 Identities=10% Similarity=0.105 Sum_probs=74.9
Q ss_pred CCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhcCCC-CCCCeEEEEccHHHHHHhhcccCccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSV 606 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~Fgl~-~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~ 606 (759)
...+||.+|+|+|..+..|...++ ..++++||++++|++.|++.+.-. +.-++..+.+|..+.+.-...
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~--------- 133 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPE--------- 133 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcc---------
Confidence 446899999999999988888876 579999999999999999886311 123466689997664332210
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 004354 607 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 677 (759)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~ 677 (759)
.......+++.+. . ...+ ++.. ...||+.+++.|+|||.|++.+
T Consensus 134 -------------------~~~~~~~~~~~gs--~--~~~~--~~~e--~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 134 -------------------PAAGRRLGFFPGS--T--IGNF--TPEE--AVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred -------------------cccCCeEEEEecc--c--ccCC--CHHH--HHHHHHHHHHhcCCCCEEEEec
Confidence 0011233444421 1 1111 1111 2469999999999999998655
No 323
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=97.87 E-value=5.1e-05 Score=80.34 Aligned_cols=94 Identities=18% Similarity=0.255 Sum_probs=72.8
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccC--CCCcEEEEeecccCC--CcccEEEeCCCChh
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTSMQ--GGLDALMEPELGHK 143 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~--~~~i~f~~~D~~~~~--gtfD~Ii~~~~~~~ 143 (759)
.+..|||+|||+|.++...+..|.++|++++.|+ |.+.|++..+.+ ..++..+.+-+++.. ...|+|++......
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEPMG~m 255 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-MAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEPMGYM 255 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEehhH-HHHHHHHHHhcCCccceEEEccCccccccCchhccEEEeccchhh
Confidence 5678999999999999999999999999999887 666777765433 246788888887776 89999999664322
Q ss_pred -----HHHHHHHHHHHhcccCcEEE
Q 004354 144 -----LGNQYLSEVKRLLKSGGKFV 163 (759)
Q Consensus 144 -----~~~~~l~ei~rvLkpGG~li 163 (759)
+.+.++ ..+|.|+|.|.++
T Consensus 256 L~NERMLEsYl-~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 256 LVNERMLESYL-HARKWLKPNGKMF 279 (517)
T ss_pred hhhHHHHHHHH-HHHhhcCCCCccc
Confidence 244444 3569999999865
No 324
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.86 E-value=8.5e-05 Score=83.00 Aligned_cols=99 Identities=15% Similarity=0.177 Sum_probs=79.8
Q ss_pred CeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccccc
Q 004354 531 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGN 610 (759)
Q Consensus 531 ~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~ 610 (759)
.+||.++.|.|.++..+....+...|+++|+||..++.+++...+..-+.++++.+|+.+++.. .
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~-~-------------- 123 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHE-E-------------- 123 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhh-c--------------
Confidence 5899999999999988877666568999999999999999988443234577999999998754 2
Q ss_pred ccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEE
Q 004354 611 EITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 676 (759)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N 676 (759)
.+||+|++|.+.. | .+|+..+...++++|++.+-
T Consensus 124 ------------------~~fD~V~lDP~Gs--------~------~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 124 ------------------RKFDVVDIDPFGS--------P------APFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred ------------------CCCCEEEECCCCC--------c------HHHHHHHHHHhcCCCEEEEE
Confidence 4599999987521 1 57888888889999999866
No 325
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=97.85 E-value=0.00052 Score=73.48 Aligned_cols=125 Identities=17% Similarity=0.221 Sum_probs=85.0
Q ss_pred ccchHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC--CC
Q 004354 501 YLASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT--QD 578 (759)
Q Consensus 501 ~L~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~--~~ 578 (759)
||...-.+.++...+ ..++||.+=.=+|+...+.... .-.+++.||++...++.|++.+.+. ..
T Consensus 108 FlDqR~nR~~v~~~~-------------~gkrvLnlFsYTGgfsv~Aa~g-GA~~v~~VD~S~~al~~a~~N~~lNg~~~ 173 (286)
T PF10672_consen 108 FLDQRENRKWVRKYA-------------KGKRVLNLFSYTGGFSVAAAAG-GAKEVVSVDSSKRALEWAKENAALNGLDL 173 (286)
T ss_dssp -GGGHHHHHHHHHHC-------------TTCEEEEET-TTTHHHHHHHHT-TESEEEEEES-HHHHHHHHHHHHHTT-CC
T ss_pred cHHHHhhHHHHHHHc-------------CCCceEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCc
Confidence 455666677665532 3479999999999888765543 3348999999999999999998432 24
Q ss_pred CCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCC-Ch-
Q 004354 579 KSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF-VE- 656 (759)
Q Consensus 579 ~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f-~~- 656 (759)
++++++.+|+.+|+++... ..+||+||+|.-+-.. ..| +.
T Consensus 174 ~~~~~~~~Dvf~~l~~~~~------------------------------~~~fD~IIlDPPsF~k--------~~~~~~~ 215 (286)
T PF10672_consen 174 DRHRFIQGDVFKFLKRLKK------------------------------GGRFDLIILDPPSFAK--------SKFDLER 215 (286)
T ss_dssp TCEEEEES-HHHHHHHHHH------------------------------TT-EEEEEE--SSEES--------STCEHHH
T ss_pred cceEEEecCHHHHHHHHhc------------------------------CCCCCEEEECCCCCCC--------CHHHHHH
Confidence 6899999999999987642 3589999998643211 111 12
Q ss_pred --HHHHHHHHHccCcCcEEEEEe
Q 004354 657 --GSFLLTVKDALSEQGLFIVNL 677 (759)
Q Consensus 657 --~~fl~~~~~~L~~~Gilv~N~ 677 (759)
.+.+..+.++|+|||+|++-.
T Consensus 216 ~y~~L~~~a~~ll~~gG~l~~~s 238 (286)
T PF10672_consen 216 DYKKLLRRAMKLLKPGGLLLTCS 238 (286)
T ss_dssp HHHHHHHHHHHTEEEEEEEEEEE
T ss_pred HHHHHHHHHHHhcCCCCEEEEEc
Confidence 346777888999999887544
No 326
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=97.82 E-value=5e-05 Score=75.86 Aligned_cols=125 Identities=15% Similarity=0.176 Sum_probs=85.5
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeE-EEEccHHHHHHhhcccCccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLK-VHITDGIKFVREMKSSSATDEMSV 606 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~-v~i~Da~~~l~~~~~~~~~~~~~~ 606 (759)
.....+|.||.|+|..-.|.-.. |..+|+.+|-+|.|-++|.+-+.=...+.+. ++++||.+.. +.+
T Consensus 75 ~~K~~vLEvgcGtG~Nfkfy~~~-p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~-~l~---------- 142 (252)
T KOG4300|consen 75 SGKGDVLEVGCGTGANFKFYPWK-PINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLP-QLA---------- 142 (252)
T ss_pred cCccceEEecccCCCCcccccCC-CCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCc-ccc----------
Confidence 34567899999999876555433 7789999999999999999988433344555 8999988753 222
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEcC--CCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChhH
Q 004354 607 VHGNEITSNNTRSCNGNCTASNARVDILIIDV--DSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQAT 684 (759)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~--~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~~ 684 (759)
+.+||+|+.-+ .|-.. | ...|.+++++|+|||.+++-= .-...
T Consensus 143 ---------------------d~s~DtVV~TlvLCSve~------~------~k~L~e~~rlLRpgG~iifiE--Hva~~ 187 (252)
T KOG4300|consen 143 ---------------------DGSYDTVVCTLVLCSVED------P------VKQLNEVRRLLRPGGRIIFIE--HVAGE 187 (252)
T ss_pred ---------------------cCCeeeEEEEEEEeccCC------H------HHHHHHHHHhcCCCcEEEEEe--ccccc
Confidence 47899999633 22111 1 679999999999999877532 22222
Q ss_pred HHHHHHHHHHhcCce
Q 004354 685 KDMVISRMKMVFNHL 699 (759)
Q Consensus 685 ~~~v~~~l~~vF~~v 699 (759)
......-+++++..+
T Consensus 188 y~~~n~i~q~v~ep~ 202 (252)
T KOG4300|consen 188 YGFWNRILQQVAEPL 202 (252)
T ss_pred chHHHHHHHHHhchh
Confidence 233344455666543
No 327
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.81 E-value=0.00021 Score=72.85 Aligned_cols=121 Identities=17% Similarity=0.250 Sum_probs=89.6
Q ss_pred ccccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh-CC-CeEEEEeCCHHHHHHHHHHhccCCCCcEEEE
Q 004354 45 EWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GF-HGITNVDFSKVVISDMLRRNVRDRSDMRWRV 122 (759)
Q Consensus 45 eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~-G~-~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~ 122 (759)
.|......+...+..-+......++.+||-+|..+|....++.+- |. ..|+++++|+...+..... ++.++|+--+.
T Consensus 50 ~W~P~RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~l-a~~R~NIiPIl 128 (229)
T PF01269_consen 50 VWNPFRSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNL-AKKRPNIIPIL 128 (229)
T ss_dssp EE-TTT-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHH-HHHSTTEEEEE
T ss_pred ecCchhhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHH-hccCCceeeee
Confidence 487777788877776665555578999999999999999999885 42 2599999999877665533 34568999999
Q ss_pred eecccCC------CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEE
Q 004354 123 MDMTSMQ------GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 123 ~D~~~~~------gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit 166 (759)
.|++... +..|+|++.-..+.+.+-+..++...||+||.+++..
T Consensus 129 ~DAr~P~~Y~~lv~~VDvI~~DVaQp~Qa~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 129 EDARHPEKYRMLVEMVDVIFQDVAQPDQARIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp S-TTSGGGGTTTS--EEEEEEE-SSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCCChHHhhcccccccEEEecCCChHHHHHHHHHHHhhccCCcEEEEEE
Confidence 9998766 8999999987767778889999999999999998875
No 328
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.80 E-value=0.0004 Score=75.51 Aligned_cols=159 Identities=13% Similarity=0.212 Sum_probs=98.3
Q ss_pred chhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh--------CCCeEEEEeCCHHHHHHHHHHhccC---CCC
Q 004354 49 EWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA--------GFHGITNVDFSKVVISDMLRRNVRD---RSD 117 (759)
Q Consensus 49 ~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~--------G~~~VtgIDiS~~~I~~a~~r~~~~---~~~ 117 (759)
....+..++..++.. .++.+|||.+||+|.+...+.+. .-.+++|+|+++.++..++-++.-. ...
T Consensus 30 TP~~i~~l~~~~~~~---~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~ 106 (311)
T PF02384_consen 30 TPREIVDLMVKLLNP---KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSN 106 (311)
T ss_dssp --HHHHHHHHHHHTT----TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBG
T ss_pred hHHHHHHHHHhhhhc---cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccc
Confidence 446677788888854 56678999999999999887762 2346999999999998877654222 123
Q ss_pred cEEEEeecccCC-----CcccEEEeCCC--Ch---------------------hHHHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 118 MRWRVMDMTSMQ-----GGLDALMEPEL--GH---------------------KLGNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 118 i~f~~~D~~~~~-----gtfD~Ii~~~~--~~---------------------~~~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
..+.+.|....+ ..||+|++++. .. ..-..++..+.+.|++||++.++....
T Consensus 107 ~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~ 186 (311)
T PF02384_consen 107 INIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNG 186 (311)
T ss_dssp CEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHH
T ss_pred ccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecch
Confidence 457888876544 57999998541 00 012357889999999999987776321
Q ss_pred --------hhhhhhhccccCCCceEEEEEeCCCCCCCCCceEEEEEEEeCCC
Q 004354 170 --------SHVLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVADKENS 213 (759)
Q Consensus 170 --------~~~~~~l~~~~~~~w~v~~~~~~~~~~~~~~~~~f~~v~~K~~~ 213 (759)
..+++.++.. .+...+..++..--.....+..+++++|.++
T Consensus 187 ~L~~~~~~~~iR~~ll~~---~~i~aVI~Lp~~~F~~t~v~t~ilil~k~~~ 235 (311)
T PF02384_consen 187 FLFSSSSEKKIRKYLLEN---GYIEAVISLPSNLFKPTGVPTSILILNKKKP 235 (311)
T ss_dssp HHHGSTHHHHHHHHHHHH---EEEEEEEE--TTSSSSSSS-EEEEEEEESSS
T ss_pred hhhccchHHHHHHHHHhh---chhhEEeecccceecccCcCceEEEEeeccc
Confidence 1233333332 3344455555422235678899999999775
No 329
>PRK05785 hypothetical protein; Provisional
Probab=97.80 E-value=0.00025 Score=73.71 Aligned_cols=90 Identities=10% Similarity=0.058 Sum_probs=65.8
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 608 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~ 608 (759)
.+.+||.||+|+|.++..|.+.+ ..+|++||+++.|++.|++.- ..+++|+.+. .
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~~--------~~~~~d~~~l----p------------ 105 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVAD--------DKVVGSFEAL----P------------ 105 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhcc--------ceEEechhhC----C------------
Confidence 36799999999999998888876 469999999999999998741 2456776542 1
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcC
Q 004354 609 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQ 670 (759)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~ 670 (759)
..+..||+|++ ......+. --+..++.+++.|+|.
T Consensus 106 -----------------~~d~sfD~v~~----~~~l~~~~------d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 106 -----------------FRDKSFDVVMS----SFALHASD------NIEKVIAEFTRVSRKQ 140 (226)
T ss_pred -----------------CCCCCEEEEEe----cChhhccC------CHHHHHHHHHHHhcCc
Confidence 12478999998 21111111 1266999999999994
No 330
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.80 E-value=0.00011 Score=82.01 Aligned_cols=109 Identities=12% Similarity=0.117 Sum_probs=81.1
Q ss_pred hhHHHHHHhhcCCCCC-CCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhccC-CCCcEEEEeecccC
Q 004354 52 QLRDPLISLIGAPTSS-PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRD-RSDMRWRVMDMTSM 128 (759)
Q Consensus 52 ~l~~~l~~~l~~~~~~-~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~~-~~~i~f~~~D~~~~ 128 (759)
++...+.+.+.. . ++.+|||++||+|.++..++.. +...|+++|+++.+++.+++++... ..++++.++|+..+
T Consensus 43 dl~~~v~~~~~~---~~~~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~ 119 (382)
T PRK04338 43 DISVLVLRAFGP---KLPRESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANAL 119 (382)
T ss_pred hHHHHHHHHHHh---hcCCCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHH
Confidence 344444455432 1 2468999999999999999765 5557999999999999998876443 34567899998653
Q ss_pred ---CCcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEE
Q 004354 129 ---QGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 165 (759)
Q Consensus 129 ---~gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liii 165 (759)
.+.||+|+.+.. .....++....+.+++||.+++.
T Consensus 120 l~~~~~fD~V~lDP~--Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 120 LHEERKFDVVDIDPF--GSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred HhhcCCCCEEEECCC--CCcHHHHHHHHHHhcCCCEEEEE
Confidence 257999999763 23467888877888999888877
No 331
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=97.80 E-value=8.8e-05 Score=71.61 Aligned_cols=99 Identities=17% Similarity=0.258 Sum_probs=69.3
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
....+||.||.|.|.+...++.. +. ++++||+++.+++. ..+.....++....
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~-~~-~~~g~D~~~~~~~~----------~~~~~~~~~~~~~~--------------- 73 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKR-GF-EVTGVDISPQMIEK----------RNVVFDNFDAQDPP--------------- 73 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHT-TS-EEEEEESSHHHHHH----------TTSEEEEEECHTHH---------------
T ss_pred CCCCEEEEEcCCCCHHHHHHHHh-CC-EEEEEECCHHHHhh----------hhhhhhhhhhhhhh---------------
Confidence 56789999999999999888766 33 99999999999998 11222222111110
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCC
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS 681 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~ 681 (759)
..+..||+|+. .+....+ + --..+|+.+++.|+|||++++-...+.
T Consensus 74 ------------------~~~~~fD~i~~----~~~l~~~---~---d~~~~l~~l~~~LkpgG~l~~~~~~~~ 119 (161)
T PF13489_consen 74 ------------------FPDGSFDLIIC----NDVLEHL---P---DPEEFLKELSRLLKPGGYLVISDPNRD 119 (161)
T ss_dssp ------------------CHSSSEEEEEE----ESSGGGS---S---HHHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred ------------------ccccchhhHhh----HHHHhhc---c---cHHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence 01368999998 1211111 1 137899999999999999999987764
No 332
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=97.78 E-value=7.7e-05 Score=77.04 Aligned_cols=102 Identities=17% Similarity=0.095 Sum_probs=73.4
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC------------CCCCeEEEEccHHHHHHhhc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT------------QDKSLKVHITDGIKFVREMK 596 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~------------~~~rl~v~i~Da~~~l~~~~ 596 (759)
...+||++|+|.|.-+.+|..+ +..|++||++|.-++.|.+.-++. ...+++++++|..++-...
T Consensus 37 ~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~- 113 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD- 113 (218)
T ss_pred CCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc-
Confidence 3469999999999999999876 469999999999999876554442 2467888999877652110
Q ss_pred ccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcE
Q 004354 597 SSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGL 672 (759)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gi 672 (759)
...||.|+- .. .-+.+||. ....+++.+.++|+|||.
T Consensus 114 -------------------------------~~~fd~v~D----~~--~~~~l~~~--~R~~~~~~l~~lL~pgG~ 150 (218)
T PRK13255 114 -------------------------------LADVDAVYD----RA--ALIALPEE--MRERYVQQLAALLPAGCR 150 (218)
T ss_pred -------------------------------CCCeeEEEe----hH--hHhhCCHH--HHHHHHHHHHHHcCCCCe
Confidence 146888864 11 11222332 247799999999999985
No 333
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=97.78 E-value=0.0002 Score=78.19 Aligned_cols=109 Identities=7% Similarity=0.059 Sum_probs=76.5
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccc
Q 004354 530 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 609 (759)
Q Consensus 530 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~ 609 (759)
+.+||.+|.|.|.++..|... ..+|++||+++.+++.|++......-++++++.+|+.++....
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~-------------- 237 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQ-------------- 237 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhc--------------
Confidence 478999999999999988874 3699999999999999998872211247999999999886432
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChhHHHH
Q 004354 610 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDM 687 (759)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~~~~~ 687 (759)
...||+|++|. |..=+..+.++.+.. +.|++++.+- |....+.+.
T Consensus 238 ------------------~~~~D~Vv~dP------------Pr~G~~~~~~~~l~~-~~~~~ivyvs--c~p~t~~rd 282 (315)
T PRK03522 238 ------------------GEVPDLVLVNP------------PRRGIGKELCDYLSQ-MAPRFILYSS--CNAQTMAKD 282 (315)
T ss_pred ------------------CCCCeEEEECC------------CCCCccHHHHHHHHH-cCCCeEEEEE--CCcccchhH
Confidence 14699999973 221123455555443 6777766644 444444333
No 334
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=97.77 E-value=0.00038 Score=79.28 Aligned_cols=104 Identities=13% Similarity=0.121 Sum_probs=78.4
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 608 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~ 608 (759)
...+||.+|.|.|.++..|.... .+|++||+++.+++.|++.+....-++++++.+|+.+++.....
T Consensus 292 ~~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~----------- 358 (431)
T TIGR00479 292 GEELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPW----------- 358 (431)
T ss_pred CCCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHh-----------
Confidence 44689999999999998888764 48999999999999999987432235799999999998765320
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEE
Q 004354 609 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 676 (759)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N 676 (759)
.+..||+|++|.... | +..++++.+.+ |+|++++.+-
T Consensus 359 ------------------~~~~~D~vi~dPPr~----G--------~~~~~l~~l~~-l~~~~ivyvs 395 (431)
T TIGR00479 359 ------------------AGQIPDVLLLDPPRK----G--------CAAEVLRTIIE-LKPERIVYVS 395 (431)
T ss_pred ------------------cCCCCCEEEECcCCC----C--------CCHHHHHHHHh-cCCCEEEEEc
Confidence 124699999965321 2 24778887664 8898876653
No 335
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.76 E-value=0.00024 Score=74.69 Aligned_cols=100 Identities=16% Similarity=0.152 Sum_probs=67.9
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC-----------------------------CCc
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-----------------------------SDM 118 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~-----------------------------~~i 118 (759)
.+.++||||||.-.....-+..-+++|+..|+++.-.+..++.+.+.. ..+
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~V 135 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRAV 135 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHHE
T ss_pred CCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHhh
Confidence 456899999999665433333457789999999998887766553321 012
Q ss_pred -EEEEeecccCC---------CcccEEEeCC------CChhHHHHHHHHHHHhcccCcEEEEEEc
Q 004354 119 -RWRVMDMTSMQ---------GGLDALMEPE------LGHKLGNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 119 -~f~~~D~~~~~---------gtfD~Ii~~~------~~~~~~~~~l~ei~rvLkpGG~liiit~ 167 (759)
.++..|+++.+ .+||+|++.. .......+.++++.++|||||.|+++..
T Consensus 136 k~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~ 200 (256)
T PF01234_consen 136 KQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGV 200 (256)
T ss_dssp EEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred ceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence 35678887765 2499998754 2344588999999999999999999864
No 336
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=97.75 E-value=0.00016 Score=79.15 Aligned_cols=102 Identities=15% Similarity=0.078 Sum_probs=72.9
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHH---hhcCCCCCCCeEEEEccHHHHHHhhcccCcccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAE---DYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMS 605 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~---~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~ 605 (759)
...+||.||+|.|.++..+....+. .|++||+++.++..++ ++.+. +.++.++.+|..+. .
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~~--~~~i~~~~~d~e~l----p--------- 185 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLGN--DQRAHLLPLGIEQL----P--------- 185 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcCC--CCCeEEEeCCHHHC----C---------
Confidence 3479999999999998888887554 6999999999886432 33332 56799999886543 1
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 004354 606 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 677 (759)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~ 677 (759)
. ...||+|+. .....-+. --..+|+.+++.|+|||.|++..
T Consensus 186 --------------------~-~~~FD~V~s----~~vl~H~~------dp~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 186 --------------------A-LKAFDTVFS----MGVLYHRR------SPLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred --------------------C-cCCcCEEEE----CChhhccC------CHHHHHHHHHHhcCCCcEEEEEE
Confidence 0 257999997 11000011 12579999999999999999864
No 337
>PRK00536 speE spermidine synthase; Provisional
Probab=97.75 E-value=0.00028 Score=74.57 Aligned_cols=95 Identities=12% Similarity=0.230 Sum_probs=74.6
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhc-----cCCCCcEEEEeecccCC-CcccEEEeCCC
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNV-----RDRSDMRWRVMDMTSMQ-GGLDALMEPEL 140 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~-----~~~~~i~f~~~D~~~~~-gtfD~Ii~~~~ 140 (759)
+.+.+||-+|.|.|..++++++.. .+|+-+||++.+++.+++.+. -..|+++.+. .+.+.. ++||+|++...
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-~~~~~~~~~fDVIIvDs~ 148 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYD-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-QLLDLDIKKYDLIICLQE 148 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcC-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-hhhhccCCcCCEEEEcCC
Confidence 356899999999999999999874 479999999999999988442 1346777665 233322 78999999754
Q ss_pred ChhHHHHHHHHHHHhcccCcEEEEEE
Q 004354 141 GHKLGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 141 ~~~~~~~~l~ei~rvLkpGG~liiit 166 (759)
. ...+++.++|.|+|||.++.-+
T Consensus 149 ~---~~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 149 P---DIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred C---ChHHHHHHHHhcCCCcEEEECC
Confidence 3 2678899999999999998864
No 338
>PRK06202 hypothetical protein; Provisional
Probab=97.75 E-value=0.00029 Score=73.23 Aligned_cols=110 Identities=16% Similarity=0.130 Sum_probs=75.1
Q ss_pred CCCCeEEEEcccccHHHHHHHHh----CCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHEC----MPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDE 603 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~----~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~ 603 (759)
..+.+||.||+|+|.++..|... .+..+|++||++|.+++.|++.... ++++++..|+-..- . .
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~---~~~~~~~~~~~~l~-~-~------- 126 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR---PGVTFRQAVSDELV-A-E------- 126 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc---CCCeEEEEeccccc-c-c-------
Confidence 45679999999999988887754 3456999999999999999988642 34666666543321 0 1
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChh
Q 004354 604 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQA 683 (759)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~ 683 (759)
+.+||+|++ .....- ++++. -..+|+.+.+.++ |.+++|-..+...
T Consensus 127 ------------------------~~~fD~V~~----~~~lhh--~~d~~--~~~~l~~~~r~~~--~~~~i~dl~~~~~ 172 (232)
T PRK06202 127 ------------------------GERFDVVTS----NHFLHH--LDDAE--VVRLLADSAALAR--RLVLHNDLIRSRL 172 (232)
T ss_pred ------------------------CCCccEEEE----CCeeec--CChHH--HHHHHHHHHHhcC--eeEEEeccccCHH
Confidence 357999998 211110 11111 1469999999887 6777777777643
No 339
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.75 E-value=0.00018 Score=76.06 Aligned_cols=99 Identities=19% Similarity=0.294 Sum_probs=69.9
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcc---CC--------------------------C-
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVR---DR--------------------------S- 116 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~---~~--------------------------~- 116 (759)
..+.+||..|||.|+++..++..||. +.|.|+|--|+=...=.+.. .. |
T Consensus 55 ~~~~~VLVPGsGLGRLa~Eia~~G~~-~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEIAKLGYA-VQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CCccEEEEcCCCcchHHHHHhhccce-EEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 34579999999999999999999996 99999999886322111110 00 1
Q ss_pred -----------CcEEEEeecccCC------CcccEEEeCC--CChhHHHHHHHHHHHhcccCcEEEEEE
Q 004354 117 -----------DMRWRVMDMTSMQ------GGLDALMEPE--LGHKLGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 117 -----------~i~f~~~D~~~~~------gtfD~Ii~~~--~~~~~~~~~l~ei~rvLkpGG~liiit 166 (759)
++....+|+.+.- +.||+|++.. .....+-.+++.|.++|||||.+|=+.
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN~G 202 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYWINFG 202 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEEEecC
Confidence 2444455554443 5899998754 223348899999999999999776553
No 340
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.74 E-value=2.7e-05 Score=77.72 Aligned_cols=95 Identities=20% Similarity=0.217 Sum_probs=67.0
Q ss_pred CCCeEEEECCCcchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC-------------Ccc
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAG--FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-------------GGL 132 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G--~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~-------------gtf 132 (759)
.+.++||+||++|.++..+.+.+ ...|+|+|+.+. ...+.+.++++|+++.. +.+
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~----------~~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~ 92 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM----------DPLQNVSFIQGDITNPENIKDIRKLLPESGEKF 92 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST----------GS-TTEEBTTGGGEEEEHSHHGGGSHGTTTCSE
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc----------ccccceeeeecccchhhHHHhhhhhccccccCc
Confidence 45899999999999999999987 356999999884 12245666666665543 379
Q ss_pred cEEEeCCC---------Chh----HHHHHHHHHHHhcccCcEEEEEEcCchhh
Q 004354 133 DALMEPEL---------GHK----LGNQYLSEVKRLLKSGGKFVCLTLAESHV 172 (759)
Q Consensus 133 D~Ii~~~~---------~~~----~~~~~l~ei~rvLkpGG~liiit~~~~~~ 172 (759)
|+|+|... .+. .....+.-+.+.|+|||.+++-.+..++.
T Consensus 93 dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~ 145 (181)
T PF01728_consen 93 DLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEI 145 (181)
T ss_dssp SEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTS
T ss_pred ceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccH
Confidence 99999651 111 14555566678899999999998876544
No 341
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.74 E-value=0.0001 Score=74.92 Aligned_cols=95 Identities=16% Similarity=0.147 Sum_probs=69.4
Q ss_pred CCCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccCC--CcccEEEeCCCC
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ--GGLDALMEPELG 141 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~~--gtfD~Ii~~~~~ 141 (759)
.++..|||+.||-|.++..++.. ....|+++|++|.+++.+++...... ..+...++|+.++. +.+|-|+++...
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~lp~ 179 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNLPE 179 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE--TS
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECChH
Confidence 46889999999999999999983 34569999999999999988765432 45889999999886 899999996532
Q ss_pred hhHHHHHHHHHHHhcccCcEEE
Q 004354 142 HKLGNQYLSEVKRLLKSGGKFV 163 (759)
Q Consensus 142 ~~~~~~~l~ei~rvLkpGG~li 163 (759)
. ...++..+.+++++||.+.
T Consensus 180 ~--~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 180 S--SLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp S--GGGGHHHHHHHEEEEEEEE
T ss_pred H--HHHHHHHHHHHhcCCcEEE
Confidence 2 3468888999999998864
No 342
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=97.73 E-value=0.00047 Score=68.88 Aligned_cols=102 Identities=14% Similarity=-0.010 Sum_probs=81.1
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccCC------CcccEEEeCC
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ------GGLDALMEPE 139 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~~------gtfD~Ii~~~ 139 (759)
.+.++||+-+|+|.++.+.+.+|...++.||.+..++...+++..... .++.++.+|+.... +.||+|+..+
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDP 122 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDP 122 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCC
Confidence 578999999999999999999999999999999999999988876544 67889999988442 3499999987
Q ss_pred CChhH-H--HHHHHH--HHHhcccCcEEEEEEcCc
Q 004354 140 LGHKL-G--NQYLSE--VKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 140 ~~~~~-~--~~~l~e--i~rvLkpGG~liiit~~~ 169 (759)
..+.. . ...+.. -..+|+|+|.+++-.-..
T Consensus 123 Py~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 123 PYAKGLLDKELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred CCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 54432 3 222333 457899999999887544
No 343
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.73 E-value=0.00032 Score=74.35 Aligned_cols=99 Identities=18% Similarity=0.229 Sum_probs=72.8
Q ss_pred CCCeEEEECCCcchhH----HHHHHhC-----C-CeEEEEeCCHHHHHHHHHHhcc------C------------C----
Q 004354 68 PPPQILVPGCGNSRLS----EHLYDAG-----F-HGITNVDFSKVVISDMLRRNVR------D------------R---- 115 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls----~~L~~~G-----~-~~VtgIDiS~~~I~~a~~r~~~------~------------~---- 115 (759)
...+|.-.||+||.-. ..|.+.+ + -+|+|+|||..+|+.|++-.-. . .
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 3679999999999844 3333432 1 2599999999999988653211 0 0
Q ss_pred --------CCcEEEEeecccCC---CcccEEEeCCC----ChhHHHHHHHHHHHhcccCcEEEEEE
Q 004354 116 --------SDMRWRVMDMTSMQ---GGLDALMEPEL----GHKLGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 116 --------~~i~f~~~D~~~~~---gtfD~Ii~~~~----~~~~~~~~l~ei~rvLkpGG~liiit 166 (759)
..|.|...|+.+.. +.||+|+|-+. ......+++..++..|+|||++++-.
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 23677777776554 78999999773 34558999999999999999998764
No 344
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=97.71 E-value=0.00063 Score=70.85 Aligned_cols=123 Identities=16% Similarity=0.226 Sum_probs=83.7
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc-CCCCCCCeEEEEccHHH-HHHhhcccCccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF-GFTQDKSLKVHITDGIK-FVREMKSSSATDEMSV 606 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F-gl~~~~rl~v~i~Da~~-~l~~~~~~~~~~~~~~ 606 (759)
.+..+|.+|.|.|+++.++.+.+|..++++||.++..+.+|.++- -+.-..++.|++-+--. ...+.
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~----------- 216 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEH----------- 216 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEeccccccccccc-----------
Confidence 344899999999999999999999999999999999999999875 22236788888542100 00000
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEcC--------CCCCCCCCCCcCCCCCC--------hHHHHHHHHHccCcC
Q 004354 607 VHGNEITSNNTRSCNGNCTASNARVDILIIDV--------DSPDSSSGMTCPAADFV--------EGSFLLTVKDALSEQ 670 (759)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~--------~s~d~~~g~scPp~~f~--------~~~fl~~~~~~L~~~ 670 (759)
+...+++|+|+..- -.-+++.+..-|+.++. -..++..+.+.|.||
T Consensus 217 ------------------~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~g 278 (328)
T KOG2904|consen 217 ------------------PLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPG 278 (328)
T ss_pred ------------------ccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccC
Confidence 11236788888622 11122233333444433 235677888999999
Q ss_pred cEEEEEecCC
Q 004354 671 GLFIVNLVSR 680 (759)
Q Consensus 671 Gilv~N~~~~ 680 (759)
|.+.+++..+
T Consensus 279 g~~~le~~~~ 288 (328)
T KOG2904|consen 279 GFEQLELVER 288 (328)
T ss_pred CeEEEEeccc
Confidence 9999999844
No 345
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.70 E-value=0.00042 Score=70.83 Aligned_cols=100 Identities=12% Similarity=0.059 Sum_probs=61.9
Q ss_pred CCCCCeEEEECCCcchhHHHHH-HhCCCeEEEEeCCHHHHHHHHHHhc----------cCCCCcEEEEeecccCC-----
Q 004354 66 SSPPPQILVPGCGNSRLSEHLY-DAGFHGITNVDFSKVVISDMLRRNV----------RDRSDMRWRVMDMTSMQ----- 129 (759)
Q Consensus 66 ~~~~~~ILDlGCG~G~ls~~L~-~~G~~~VtgIDiS~~~I~~a~~r~~----------~~~~~i~f~~~D~~~~~----- 129 (759)
..+++..+|||||.|......+ ..+++..+||++.+...+.|..... ....++++..+|+.+..
T Consensus 40 l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~ 119 (205)
T PF08123_consen 40 LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDI 119 (205)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhh
Confidence 4678999999999999987765 3488889999999998876654221 12346788899987754
Q ss_pred -CcccEEEeCCCC-hhHHHHHHHHHHHhcccCcEEEEE
Q 004354 130 -GGLDALMEPELG-HKLGNQYLSEVKRLLKSGGKFVCL 165 (759)
Q Consensus 130 -gtfD~Ii~~~~~-~~~~~~~l~ei~rvLkpGG~liii 165 (759)
..-|+|++++.. .......+.+...-||+|-++|..
T Consensus 120 ~s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~G~~IIs~ 157 (205)
T PF08123_consen 120 WSDADVVFVNNTCFDPDLNLALAELLLELKPGARIIST 157 (205)
T ss_dssp GHC-SEEEE--TTT-HHHHHHHHHHHTTS-TT-EEEES
T ss_pred hcCCCEEEEeccccCHHHHHHHHHHHhcCCCCCEEEEC
Confidence 457999998743 233555667777888988877644
No 346
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=97.70 E-value=0.00042 Score=79.20 Aligned_cols=112 Identities=11% Similarity=0.056 Sum_probs=79.9
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 608 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~ 608 (759)
...+||.+|.|.|.++..|.... .+|++||+++.+++.|++.+....-++++++.+|+.+++....
T Consensus 297 ~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~------------ 362 (443)
T PRK13168 297 PGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQP------------ 362 (443)
T ss_pred CCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhh------------
Confidence 34689999999999998888775 5899999999999999998732222469999999988864421
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChhHHHH
Q 004354 609 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDM 687 (759)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~~~~~ 687 (759)
..+..||+|++|.-- .| . .+.++.+.+ |++++++.+-+ ....+.+.
T Consensus 363 -----------------~~~~~fD~Vi~dPPr----~g--------~-~~~~~~l~~-~~~~~ivyvSC--np~tlaRD 408 (443)
T PRK13168 363 -----------------WALGGFDKVLLDPPR----AG--------A-AEVMQALAK-LGPKRIVYVSC--NPATLARD 408 (443)
T ss_pred -----------------hhcCCCCEEEECcCC----cC--------h-HHHHHHHHh-cCCCeEEEEEe--ChHHhhcc
Confidence 012469999996421 11 1 456666655 68899877554 44444444
No 347
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=97.69 E-value=0.00056 Score=75.79 Aligned_cols=128 Identities=14% Similarity=0.155 Sum_probs=78.0
Q ss_pred hHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccC-CCCcEEEEeecccCC--
Q 004354 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD-RSDMRWRVMDMTSMQ-- 129 (759)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~-~~~i~f~~~D~~~~~-- 129 (759)
+...+.+++.. .++ .|||+-||.|.++..|++. +.+|+|||+++.+++.|++++... ..+++|+++++.+..
T Consensus 185 l~~~~~~~l~~---~~~-~vlDlycG~G~fsl~la~~-~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~ 259 (352)
T PF05958_consen 185 LYEQALEWLDL---SKG-DVLDLYCGVGTFSLPLAKK-AKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKA 259 (352)
T ss_dssp HHHHHHHHCTT----TT-EEEEES-TTTCCHHHHHCC-SSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCH
T ss_pred HHHHHHHHhhc---CCC-cEEEEeecCCHHHHHHHhh-CCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHH
Confidence 34444555553 333 8999999999999999876 567999999999999999887543 467999998875542
Q ss_pred -----------------CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEEcCchhhhhhhccccCCCceEEEEE
Q 004354 130 -----------------GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHA 190 (759)
Q Consensus 130 -----------------gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit~~~~~~~~~l~~~~~~~w~v~~~~ 190 (759)
..+|+|+..+.-.-....+++.+.+ + .+++.++..+....+.+-.. ..+|.+....
T Consensus 260 ~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~~~~~---~-~~ivYvSCnP~tlaRDl~~L-~~~y~~~~v~ 332 (352)
T PF05958_consen 260 LAKAREFNRLKGIDLKSFKFDAVILDPPRAGLDEKVIELIKK---L-KRIVYVSCNPATLARDLKIL-KEGYKLEKVQ 332 (352)
T ss_dssp HCCS-GGTTGGGS-GGCTTESEEEE---TT-SCHHHHHHHHH---S-SEEEEEES-HHHHHHHHHHH-HCCEEEEEEE
T ss_pred HHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCchHHHHHHHhc---C-CeEEEEECCHHHHHHHHHHH-hhcCEEEEEE
Confidence 2579999865221112334444433 2 48888888766554444332 2367665433
No 348
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=97.69 E-value=0.00014 Score=74.85 Aligned_cols=102 Identities=22% Similarity=0.260 Sum_probs=72.6
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC-CCCCeEEEEccHHHHHHhhcccCccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSV 606 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~-~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~ 606 (759)
....+||.||+|+|.++..+... ..+|++||++|.+++.|++.+... ..+++.++++|..+.
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~--------------- 116 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSL--------------- 116 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhC---------------
Confidence 35679999999999999888875 359999999999999999987432 124789999986542
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEE-cCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEE
Q 004354 607 VHGNEITSNNTRSCNGNCTASNARVDILII-DVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 676 (759)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~-D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N 676 (759)
...||+|+. ++..- + |+.. -..+++.+.+.+++++++.++
T Consensus 117 ---------------------~~~fD~ii~~~~l~~-----~--~~~~--~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 117 ---------------------CGEFDIVVCMDVLIH-----Y--PASD--MAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred ---------------------CCCcCEEEEhhHHHh-----C--CHHH--HHHHHHHHHHHhCCCEEEEEC
Confidence 146999986 22110 0 1211 245788888888876666543
No 349
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=97.69 E-value=0.00052 Score=74.72 Aligned_cols=59 Identities=15% Similarity=0.214 Sum_probs=47.9
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC--CCCCeEEEEc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT--QDKSLKVHIT 586 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~--~~~rl~v~i~ 586 (759)
+...++|.||.|+|++...|....+..+++++||||..++.|++..... -.++++++..
T Consensus 113 ~~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~ 173 (321)
T PRK11727 113 GANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQ 173 (321)
T ss_pred CCCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEc
Confidence 4568999999999977777776667889999999999999999988442 2467888653
No 350
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.69 E-value=0.00012 Score=78.66 Aligned_cols=74 Identities=11% Similarity=0.072 Sum_probs=58.0
Q ss_pred hhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC
Q 004354 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG--FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ 129 (759)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G--~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~ 129 (759)
.+...+...+.. .++..+||.+||.|..+..+++.. ...|+|+|.++.+++.+++++.. ..+++++++|+.++.
T Consensus 6 Vll~Evl~~L~~---~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-~~ri~~i~~~f~~l~ 81 (296)
T PRK00050 6 VLLDEVVDALAI---KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-FGRFTLVHGNFSNLK 81 (296)
T ss_pred ccHHHHHHhhCC---CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-CCcEEEEeCCHHHHH
Confidence 444445555543 577899999999999999999874 24699999999999999988755 557888888876653
No 351
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.69 E-value=0.00028 Score=79.86 Aligned_cols=126 Identities=11% Similarity=0.135 Sum_probs=87.6
Q ss_pred hHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeecccCC--
Q 004354 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ-- 129 (759)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~-~~i~f~~~D~~~~~-- 129 (759)
+.....+++.. .++.++||+=||.|.++..|++. ..+|+|+|+++.+++.|+++++..+ .|++|..+|++++.
T Consensus 281 l~~~a~~~~~~---~~~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~ 356 (432)
T COG2265 281 LYETALEWLEL---AGGERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPA 356 (432)
T ss_pred HHHHHHHHHhh---cCCCEEEEeccCCChhhhhhccc-CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhh
Confidence 33444455544 56789999999999999999976 5569999999999999998876543 56999999998876
Q ss_pred ----CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEEcCchhhhhhhccccCCCc
Q 004354 130 ----GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGW 184 (759)
Q Consensus 130 ----gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit~~~~~~~~~l~~~~~~~w 184 (759)
..+|+|+.++.-.-....+++.+.+.- |- +++.++..+..+.+.+-.....+.
T Consensus 357 ~~~~~~~d~VvvDPPR~G~~~~~lk~l~~~~-p~-~IvYVSCNP~TlaRDl~~L~~~gy 413 (432)
T COG2265 357 WWEGYKPDVVVVDPPRAGADREVLKQLAKLK-PK-RIVYVSCNPATLARDLAILASTGY 413 (432)
T ss_pred ccccCCCCEEEECCCCCCCCHHHHHHHHhcC-CC-cEEEEeCCHHHHHHHHHHHHhCCe
Confidence 378999997632222345566655543 33 355666666555554444333344
No 352
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.68 E-value=0.00084 Score=70.93 Aligned_cols=100 Identities=18% Similarity=0.201 Sum_probs=79.6
Q ss_pred CCCCeEEEECCCcchhHHHHHHhC---CCeEEEEeCCHHHHHHHHHHhccCC-CCc-EEEEeecccCC------CcccEE
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAG---FHGITNVDFSKVVISDMLRRNVRDR-SDM-RWRVMDMTSMQ------GGLDAL 135 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G---~~~VtgIDiS~~~I~~a~~r~~~~~-~~i-~f~~~D~~~~~------gtfD~I 135 (759)
..+.+||||.||.|+......... ...|.-.|+|+..++..++.++..+ .++ +|.+.|+.+.. ...+++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 356799999999999988777652 3469999999999999988875543 445 99999998875 457888
Q ss_pred EeCCC-----ChhHHHHHHHHHHHhcccCcEEEEEE
Q 004354 136 MEPEL-----GHKLGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 136 i~~~~-----~~~~~~~~l~ei~rvLkpGG~liiit 166 (759)
+.+.. ....+...+..+.+.+.|||++|...
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTg 249 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTG 249 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcC
Confidence 87652 22347888999999999999999775
No 353
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.67 E-value=0.00055 Score=68.89 Aligned_cols=128 Identities=16% Similarity=0.182 Sum_probs=96.7
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
.+..+||.||.|-|....|+++.-|. +-..+|..|.|++--|++-- .+-+++.+..+-=.+.+..+.
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~-~H~IiE~hp~V~krmr~~gw-~ek~nViil~g~WeDvl~~L~----------- 166 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPD-EHWIIEAHPDVLKRMRDWGW-REKENVIILEGRWEDVLNTLP----------- 166 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCc-ceEEEecCHHHHHHHHhccc-ccccceEEEecchHhhhcccc-----------
Confidence 56789999999999999999999665 77889999999999988853 345667777765555555554
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEE-EEecCCChhHHH
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFI-VNLVSRSQATKD 686 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv-~N~~~~~~~~~~ 686 (759)
++.||=|..|.++.-+. -..+|.+.+-++|+|+|+|. +|..+-+..+.-
T Consensus 167 --------------------d~~FDGI~yDTy~e~yE----------dl~~~hqh~~rLLkP~gv~SyfNg~~~~~~~~~ 216 (271)
T KOG1709|consen 167 --------------------DKHFDGIYYDTYSELYE----------DLRHFHQHVVRLLKPEGVFSYFNGLGADNLMFY 216 (271)
T ss_pred --------------------ccCcceeEeechhhHHH----------HHHHHHHHHhhhcCCCceEEEecCcccchhhhh
Confidence 45699999999876321 13779999999999999998 688877766433
Q ss_pred HHHHHHHHhcCceEEEeec
Q 004354 687 MVISRMKMVFNHLFCLQLE 705 (759)
Q Consensus 687 ~v~~~l~~vF~~v~~~~~~ 705 (759)
.++..+..+++.
T Consensus 217 -------~vy~~lV~iev~ 228 (271)
T KOG1709|consen 217 -------DVYKILVMIEVA 228 (271)
T ss_pred -------hhhheeEEEEee
Confidence 255555555543
No 354
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=97.67 E-value=0.00018 Score=72.26 Aligned_cols=107 Identities=18% Similarity=0.287 Sum_probs=77.8
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004354 530 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 606 (759)
Q Consensus 530 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~ 606 (759)
..++|.+=.|+|++..-.... ....++.||.|+..+.+.++.. ++ .++++++.+|+..++.....
T Consensus 43 g~~vLDLFaGSGalGlEALSR-GA~~v~fVE~~~~a~~~i~~N~~~l~~--~~~~~v~~~d~~~~l~~~~~--------- 110 (183)
T PF03602_consen 43 GARVLDLFAGSGALGLEALSR-GAKSVVFVEKNRKAIKIIKKNLEKLGL--EDKIRVIKGDAFKFLLKLAK--------- 110 (183)
T ss_dssp T-EEEETT-TTSHHHHHHHHT-T-SEEEEEES-HHHHHHHHHHHHHHT---GGGEEEEESSHHHHHHHHHH---------
T ss_pred CCeEEEcCCccCccHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHHhCC--CcceeeeccCHHHHHHhhcc---------
Confidence 479999999999998754444 2359999999999999999987 44 45899999999999987631
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCC--hHHHHHHHH--HccCcCcEEEEEecCC
Q 004354 607 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFV--EGSFLLTVK--DALSEQGLFIVNLVSR 680 (759)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~--~~~fl~~~~--~~L~~~Gilv~N~~~~ 680 (759)
...+||+|++|. |-..- -.+.++.+. ..|+++|++++-....
T Consensus 111 --------------------~~~~fDiIflDP------------PY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 111 --------------------KGEKFDIIFLDP------------PYAKGLYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp --------------------CTS-EEEEEE--------------STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred --------------------cCCCceEEEECC------------CcccchHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 147899999963 33322 266777776 7899999999887544
No 355
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.66 E-value=0.00026 Score=78.81 Aligned_cols=101 Identities=14% Similarity=0.214 Sum_probs=82.0
Q ss_pred CCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004354 530 SVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 608 (759)
Q Consensus 530 ~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~ 608 (759)
+.+||.+..|.|....-+....+ ...|+++|+||..++.+++...+..-+.++++.+|+..++....
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~------------ 112 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRN------------ 112 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhC------------
Confidence 36899999999988876665543 35899999999999999999855433468999999999987643
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEE
Q 004354 609 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 676 (759)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N 676 (759)
.+||+|++|.+.. | ..|+..+.+.+.++|+|.+-
T Consensus 113 --------------------~~fDvIdlDPfGs--------~------~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 113 --------------------RKFHVIDIDPFGT--------P------APFVDSAIQASAERGLLLVT 146 (374)
T ss_pred --------------------CCCCEEEeCCCCC--------c------HHHHHHHHHhcccCCEEEEE
Confidence 5699999987532 1 46999999999999999876
No 356
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.66 E-value=0.00033 Score=78.29 Aligned_cols=108 Identities=8% Similarity=0.080 Sum_probs=79.8
Q ss_pred CeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccccc
Q 004354 531 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGN 610 (759)
Q Consensus 531 ~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~ 610 (759)
.+||.+|.|.|.++..+... ..+|++||+|+..++.|++......-++++++.+|+.+++....
T Consensus 235 ~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~-------------- 298 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQM-------------- 298 (374)
T ss_pred CEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcC--------------
Confidence 68999999999998888754 36899999999999999988732222479999999999875422
Q ss_pred ccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChhHHHH
Q 004354 611 EITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDM 687 (759)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~~~~~ 687 (759)
.+||+||+|. |..=+..++++.+.. ++|++++.+- |....+.+.
T Consensus 299 ------------------~~~D~vi~DP------------Pr~G~~~~~l~~l~~-~~p~~ivyvs--c~p~TlaRD 342 (374)
T TIGR02085 299 ------------------SAPELVLVNP------------PRRGIGKELCDYLSQ-MAPKFILYSS--CNAQTMAKD 342 (374)
T ss_pred ------------------CCCCEEEECC------------CCCCCcHHHHHHHHh-cCCCeEEEEE--eCHHHHHHH
Confidence 3599999973 222234677777754 7899887755 444555555
No 357
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=97.66 E-value=0.00022 Score=77.56 Aligned_cols=102 Identities=12% Similarity=0.072 Sum_probs=71.1
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHH---HHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNL---AEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMS 605 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~v---A~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~ 605 (759)
...+||.||+|+|.+...+....+. .|++||+++.++.. ++++.+ .+.++.+...|..+. .
T Consensus 121 ~g~~VLDvGCG~G~~~~~~~~~g~~-~v~GiDpS~~ml~q~~~~~~~~~--~~~~v~~~~~~ie~l----p--------- 184 (314)
T TIGR00452 121 KGRTILDVGCGSGYHMWRMLGHGAK-SLVGIDPTVLFLCQFEAVRKLLD--NDKRAILEPLGIEQL----H--------- 184 (314)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHHhc--cCCCeEEEECCHHHC----C---------
Confidence 4579999999999988777766443 79999999999864 344444 246788877764332 1
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 004354 606 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 677 (759)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~ 677 (759)
....||+|+. .....-+.. -..+|..+++.|+|||.|++..
T Consensus 185 ---------------------~~~~FD~V~s----~gvL~H~~d------p~~~L~el~r~LkpGG~Lvlet 225 (314)
T TIGR00452 185 ---------------------ELYAFDTVFS----MGVLYHRKS------PLEHLKQLKHQLVIKGELVLET 225 (314)
T ss_pred ---------------------CCCCcCEEEE----cchhhccCC------HHHHHHHHHHhcCCCCEEEEEE
Confidence 0146999997 111000111 1579999999999999999864
No 358
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.65 E-value=3.1e-05 Score=70.28 Aligned_cols=98 Identities=15% Similarity=0.219 Sum_probs=48.4
Q ss_pred EEEcccccHHHHHHHHhCCCC---cEEEEEcCH---HHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 534 VVIGLGAGLLPMFLHECMPFV---GIEAVELDL---TMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 534 LviGlG~G~l~~~L~~~~p~~---~i~~VEiDp---~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
|.||...|..+.++...++.. ++.+||.++ ..-+..++ .++ .++++++.+|..+++....
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~-~~~--~~~~~~~~g~s~~~l~~~~----------- 66 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKK-AGL--SDRVEFIQGDSPDFLPSLP----------- 66 (106)
T ss_dssp --------------------------EEEESS-------------GGG---BTEEEEES-THHHHHHHH-----------
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhh-cCC--CCeEEEEEcCcHHHHHHcC-----------
Confidence 578988887777776665443 699999999 45555544 344 4689999999999988764
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEE
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 676 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N 676 (759)
..+||+|++|.+.... .....|+.+..+|+|||++++.
T Consensus 67 --------------------~~~~dli~iDg~H~~~-----------~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 67 --------------------DGPIDLIFIDGDHSYE-----------AVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp --------------------H--EEEEEEES---HH-----------HHHHHHHHHGGGEEEEEEEEEE
T ss_pred --------------------CCCEEEEEECCCCCHH-----------HHHHHHHHHHHHcCCCeEEEEe
Confidence 2689999999864321 1266789999999999999975
No 359
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=97.65 E-value=0.00056 Score=75.13 Aligned_cols=110 Identities=18% Similarity=0.165 Sum_probs=78.0
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCcccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMS 605 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~ 605 (759)
...++|.+|+|+|+++..+.. ....+.++|+|+.+++.|+..+ |+. .+.++.+|+.+. .
T Consensus 182 ~g~~vLDp~cGtG~~lieaa~--~~~~v~g~Di~~~~~~~a~~nl~~~g~~---~i~~~~~D~~~l----~--------- 243 (329)
T TIGR01177 182 EGDRVLDPFCGTGGFLIEAGL--MGAKVIGCDIDWKMVAGARINLEHYGIE---DFFVKRGDATKL----P--------- 243 (329)
T ss_pred CcCEEEECCCCCCHHHHHHHH--hCCeEEEEcCCHHHHHHHHHHHHHhCCC---CCeEEecchhcC----C---------
Confidence 346899999999988765443 3569999999999999999776 552 288999997653 1
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCC-C--ChHHHHHHHHHccCcCcEEEEEecCC
Q 004354 606 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAAD-F--VEGSFLLTVKDALSEQGLFIVNLVSR 680 (759)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~-f--~~~~fl~~~~~~L~~~Gilv~N~~~~ 680 (759)
.....||+|+.|.--+... +. ... + +-..+|+.+++.|+|||.+++-+...
T Consensus 244 --------------------~~~~~~D~Iv~dPPyg~~~-~~---~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~ 297 (329)
T TIGR01177 244 --------------------LSSESVDAIATDPPYGRST-TA---AGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR 297 (329)
T ss_pred --------------------cccCCCCEEEECCCCcCcc-cc---cCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC
Confidence 0125799999975322111 00 111 1 23689999999999999998876543
No 360
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.64 E-value=0.00017 Score=76.56 Aligned_cols=148 Identities=15% Similarity=0.216 Sum_probs=77.5
Q ss_pred CCCeEEEEccccc-HHHHHHHH-hCCCCcEEEEEcCHHHHHHHHhhcC--CCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004354 529 KSVKAVVIGLGAG-LLPMFLHE-CMPFVGIEAVELDLTMLNLAEDYFG--FTQDKSLKVHITDGIKFVREMKSSSATDEM 604 (759)
Q Consensus 529 ~~~~vLviGlG~G-~l~~~L~~-~~p~~~i~~VEiDp~v~~vA~~~Fg--l~~~~rl~v~i~Da~~~l~~~~~~~~~~~~ 604 (759)
.|.+|+.||.|.= ..+..|.. +.+...|+.+|+||+.++.|++-.. +.-+.+++++.+|+.+.-.+.
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl--------- 190 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDL--------- 190 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----------
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccccc---------
Confidence 5679999999965 44445543 4567899999999999999988653 112789999999987653322
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChhH
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQAT 684 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~~ 684 (759)
..||+|++-+-- ||..- --.+.|+.+.+.++||..+++=-...-+.+
T Consensus 191 ------------------------~~~DvV~lAalV-----g~~~e----~K~~Il~~l~~~m~~ga~l~~Rsa~GlR~~ 237 (276)
T PF03059_consen 191 ------------------------KEYDVVFLAALV-----GMDAE----PKEEILEHLAKHMAPGARLVVRSAHGLRSF 237 (276)
T ss_dssp ---------------------------SEEEE-TT------S--------SHHHHHHHHHHHS-TTSEEEEEE--GGGGG
T ss_pred ------------------------ccCCEEEEhhhc-----ccccc----hHHHHHHHHHhhCCCCcEEEEecchhhHHH
Confidence 469999994432 22211 237899999999999999887532211222
Q ss_pred HHHHHH-HHHHhcCceEEEeecCC-ccEEEEEecCC
Q 004354 685 KDMVIS-RMKMVFNHLFCLQLEED-VNLVLFGLSSE 718 (759)
Q Consensus 685 ~~~v~~-~l~~vF~~v~~~~~~~~-~N~Vl~a~~~~ 718 (759)
....++ .-..-|.-+..+...++ +|.|+|+.+..
T Consensus 238 LYp~vd~~~l~gf~~~~~~hP~~~ViNSvv~~rk~~ 273 (276)
T PF03059_consen 238 LYPVVDPEDLRGFEVLAVVHPTDEVINSVVFARKKQ 273 (276)
T ss_dssp SS----TGGGTTEEEEEEE---TT---EEEEE----
T ss_pred cCCCCChHHCCCeEEEEEECCCCCceeEEEEEEecc
Confidence 111111 11125666666664444 69999997654
No 361
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.63 E-value=7.7e-05 Score=75.79 Aligned_cols=102 Identities=15% Similarity=0.160 Sum_probs=81.5
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcc---CCCCcEEEEeecccCC-----CcccEEEeC
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVR---DRSDMRWRVMDMTSMQ-----GGLDALMEP 138 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~---~~~~i~f~~~D~~~~~-----gtfD~Ii~~ 138 (759)
+.+.+|||...|-|..+...+++|..+|+.++-+|.+++.|.-+--. ....++.+.+|+.+.- .+||+|+-.
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiHD 212 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIHD 212 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEeeC
Confidence 56889999999999999999999997899999999999877543211 1135789999987654 789999986
Q ss_pred CC-----ChhHHHHHHHHHHHhcccCcEEEEEEcC
Q 004354 139 EL-----GHKLGNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 139 ~~-----~~~~~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
+. .+--...+.++++|+|+|||+++-.+-.
T Consensus 213 PPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~ 247 (287)
T COG2521 213 PPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGN 247 (287)
T ss_pred CCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCC
Confidence 52 2112788999999999999999877643
No 362
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=97.60 E-value=0.00017 Score=72.74 Aligned_cols=105 Identities=17% Similarity=0.174 Sum_probs=71.8
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 608 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~ 608 (759)
++.++|.||.|.|-.+.||... +..|++||+++.-++.+++.-.- ++=.++....|-.++ .
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~-~~l~i~~~~~Dl~~~----~------------ 90 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEE-EGLDIRTRVADLNDF----D------------ 90 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHH-TT-TEEEEE-BGCCB----S------------
T ss_pred CCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhh-cCceeEEEEecchhc----c------------
Confidence 4679999999999999999998 46999999999998877665411 111378888873322 1
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEec
Q 004354 609 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 678 (759)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~ 678 (759)
-...||+|+..+-- +-++++.+ +.+++.++..++|||++++...
T Consensus 91 ------------------~~~~yD~I~st~v~------~fL~~~~~--~~i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 91 ------------------FPEEYDFIVSTVVF------MFLQRELR--PQIIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp -------------------TTTEEEEEEESSG------GGS-GGGH--HHHHHHHHHTEEEEEEEEEEEE
T ss_pred ------------------ccCCcCEEEEEEEe------ccCCHHHH--HHHHHHHHhhcCCcEEEEEEEe
Confidence 12579999874311 12233322 6789999999999999887543
No 363
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.60 E-value=0.00019 Score=79.95 Aligned_cols=96 Identities=5% Similarity=0.012 Sum_probs=79.4
Q ss_pred CCeEEEECCCcchhHHHHHHh--CCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeecccCC----CcccEEEeCCCC
Q 004354 69 PPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ----GGLDALMEPELG 141 (759)
Q Consensus 69 ~~~ILDlGCG~G~ls~~L~~~--G~~~VtgIDiS~~~I~~a~~r~~~~~-~~i~f~~~D~~~~~----gtfD~Ii~~~~~ 141 (759)
+.+|||+.||+|..+..++.. |.+.|+++|+++.+++.++++..... .++.+.+.|+..+. ..||+|...+.
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDPf- 123 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDPF- 123 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCCC-
Confidence 358999999999999999887 67889999999999999988875433 35788999987654 57999999763
Q ss_pred hhHHHHHHHHHHHhcccCcEEEEEE
Q 004354 142 HKLGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 142 ~~~~~~~l~ei~rvLkpGG~liiit 166 (759)
.....++..+.+.+++||.+++..
T Consensus 124 -Gs~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 124 -GTPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred -CCcHHHHHHHHHhcccCCEEEEEe
Confidence 234579999999999999988774
No 364
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.60 E-value=0.00039 Score=79.56 Aligned_cols=102 Identities=16% Similarity=0.178 Sum_probs=81.1
Q ss_pred CCCCeEEEECCCcchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeecccCC----CcccEEEeCC
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAG--FHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ----GGLDALMEPE 139 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G--~~~VtgIDiS~~~I~~a~~r~~~~~-~~i~f~~~D~~~~~----gtfD~Ii~~~ 139 (759)
.++.+|||++||.|.=+.+++..- -..|++.|+++.-++.+++++.+.+ .++.+.+.|...+. +.||.|++..
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDa 191 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLDA 191 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcC
Confidence 678999999999999999998751 2359999999999999888876543 56788888887654 7899999532
Q ss_pred ----CC----------h----------hHHHHHHHHHHHhcccCcEEEEEEcC
Q 004354 140 ----LG----------H----------KLGNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 140 ----~~----------~----------~~~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
.. . ....++|..+.+.|||||+++..|.+
T Consensus 192 PCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT 244 (470)
T PRK11933 192 PCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT 244 (470)
T ss_pred CCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence 10 0 01478899999999999999999876
No 365
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.59 E-value=0.00027 Score=73.46 Aligned_cols=74 Identities=16% Similarity=0.249 Sum_probs=64.6
Q ss_pred CCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccCC-CcccEEEeCC
Q 004354 65 TSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ-GGLDALMEPE 139 (759)
Q Consensus 65 ~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~~-gtfD~Ii~~~ 139 (759)
..++.+.|||+|.|||.++..|++.|-+ |+++++++.|+....++..... ..++.+++|+...+ ..||.++++-
T Consensus 55 ~~k~tD~VLEvGPGTGnLT~~lLe~~kk-VvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P~fd~cVsNl 131 (315)
T KOG0820|consen 55 DLKPTDVVLEVGPGTGNLTVKLLEAGKK-VVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLPRFDGCVSNL 131 (315)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHhcCe-EEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCcccceeeccC
Confidence 3478899999999999999999999775 9999999999999988875433 56899999999888 8899999853
No 366
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.59 E-value=0.0011 Score=67.81 Aligned_cols=136 Identities=14% Similarity=0.143 Sum_probs=97.0
Q ss_pred EEEECCCcchhHHHHHHhCC-CeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccc-CC-C-cccEEEeCCCChhHH
Q 004354 72 ILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTS-MQ-G-GLDALMEPELGHKLG 145 (759)
Q Consensus 72 ILDlGCG~G~ls~~L~~~G~-~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~-~~-g-tfD~Ii~~~~~~~~~ 145 (759)
|.||||--|.+..+|.+.|. ..++++|+++..++.|++.....+ ..++++.+|-.+ ++ + ..|.|+.....-...
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMGG~lI 80 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGMGGELI 80 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-HHHH
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecCCHHHH
Confidence 68999999999999999986 469999999999999999886543 569999999654 44 4 389998887777778
Q ss_pred HHHHHHHHHhcccCcEEEEEEcCchhhhhhhccccCCCceEEEEEeCCCCCCCCCceEEEEEEEeCCC
Q 004354 146 NQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVADKENS 213 (759)
Q Consensus 146 ~~~l~ei~rvLkpGG~liiit~~~~~~~~~l~~~~~~~w~v~~~~~~~~~~~~~~~~~f~~v~~K~~~ 213 (759)
..++++....++....|++........++.++... +|.+.-..+-.+ ....|-++++.+...
T Consensus 81 ~~ILe~~~~~~~~~~~lILqP~~~~~~LR~~L~~~--gf~I~~E~lv~e----~~~~YeIi~~~~~~~ 142 (205)
T PF04816_consen 81 IEILEAGPEKLSSAKRLILQPNTHAYELRRWLYEN--GFEIIDEDLVEE----NGRFYEIIVAERGEE 142 (205)
T ss_dssp HHHHHHTGGGGTT--EEEEEESS-HHHHHHHHHHT--TEEEEEEEEEEE----TTEEEEEEEEEESSS
T ss_pred HHHHHhhHHHhccCCeEEEeCCCChHHHHHHHHHC--CCEEEEeEEEeE----CCEEEEEEEEEeCCC
Confidence 88999988888877788888877766666666543 788887777553 235555555555543
No 367
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.59 E-value=0.00066 Score=62.43 Aligned_cols=97 Identities=27% Similarity=0.354 Sum_probs=68.9
Q ss_pred EEEECCCcchhHHHHHHhCC--CeEEEEeCCHHHHHHHHHHhccCCCC--cEEEEeeccc--CC--C--cccEEEeCCCC
Q 004354 72 ILVPGCGNSRLSEHLYDAGF--HGITNVDFSKVVISDMLRRNVRDRSD--MRWRVMDMTS--MQ--G--GLDALMEPELG 141 (759)
Q Consensus 72 ILDlGCG~G~ls~~L~~~G~--~~VtgIDiS~~~I~~a~~r~~~~~~~--i~f~~~D~~~--~~--g--tfD~Ii~~~~~ 141 (759)
+||+|||+|... .+..... ..++|+|+++.++..++..... ... +.+...|... .+ . .||++......
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLPFEDSASFDLVISLLVL 129 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCCCCCCCceeEEeeeeeh
Confidence 999999999976 3333322 2589999999999885544322 222 6888888765 44 3 79999333322
Q ss_pred hhH-HHHHHHHHHHhcccCcEEEEEEcCch
Q 004354 142 HKL-GNQYLSEVKRLLKSGGKFVCLTLAES 170 (759)
Q Consensus 142 ~~~-~~~~l~ei~rvLkpGG~liiit~~~~ 170 (759)
++. ....+.++.+.|+|+|.+++......
T Consensus 130 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 130 HLLPPAKALRELLRVLKPGGRLVLSDLLRD 159 (257)
T ss_pred hcCCHHHHHHHHHHhcCCCcEEEEEeccCC
Confidence 222 58899999999999999999887643
No 368
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.54 E-value=0.001 Score=70.76 Aligned_cols=122 Identities=15% Similarity=0.215 Sum_probs=84.8
Q ss_pred hhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC
Q 004354 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ 129 (759)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~ 129 (759)
.+.+.+.+.+.+.. .++..|||+|+|.|.++..|++.+ ++++++|+++..++..+++.. ..++++++..|+.++.
T Consensus 15 ~~~~~~~Iv~~~~~---~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~-~~~~~~vi~~D~l~~~ 89 (262)
T PF00398_consen 15 DPNIADKIVDALDL---SEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFA-SNPNVEVINGDFLKWD 89 (262)
T ss_dssp HHHHHHHHHHHHTC---GTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCT-TCSSEEEEES-TTTSC
T ss_pred CHHHHHHHHHhcCC---CCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhh-hcccceeeecchhccc
Confidence 34566667777754 578899999999999999999997 789999999999998888764 5678999999999887
Q ss_pred --C----cccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEEcCchhhhhhhcc
Q 004354 130 --G----GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFP 178 (759)
Q Consensus 130 --g----tfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit~~~~~~~~~l~~ 178 (759)
. .-..|+++ .+......++..+...-+. |+.-++.+-|..+..++..
T Consensus 90 ~~~~~~~~~~~vv~N-lPy~is~~il~~ll~~~~~-g~~~~~l~vq~e~a~rl~a 142 (262)
T PF00398_consen 90 LYDLLKNQPLLVVGN-LPYNISSPILRKLLELYRF-GRVRMVLMVQKEVAERLLA 142 (262)
T ss_dssp GGGHCSSSEEEEEEE-ETGTGHHHHHHHHHHHGGG-CEEEEEEEEEHHHHHHHHT
T ss_pred cHHhhcCCceEEEEE-ecccchHHHHHHHhhcccc-cccceEEEEehhhhhhccC
Confidence 2 23355553 3444455666666664344 3333333334445555544
No 369
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.52 E-value=0.0011 Score=66.35 Aligned_cols=120 Identities=18% Similarity=0.240 Sum_probs=98.2
Q ss_pred ccccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEe
Q 004354 45 EWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVM 123 (759)
Q Consensus 45 eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~ 123 (759)
+|......+...+..=++.....++.+||=+|+.+|....++.+- |-..++++++|+.+........ ..++|+--+..
T Consensus 53 ~Wnp~RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a-~~R~Ni~PIL~ 131 (231)
T COG1889 53 EWNPRRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVA-EKRPNIIPILE 131 (231)
T ss_pred eeCcchhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHH-HhCCCceeeec
Confidence 688777778777777666556688999999999999999999886 4235999999998877665544 45688989999
Q ss_pred ecccCC------CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEE
Q 004354 124 DMTSMQ------GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 165 (759)
Q Consensus 124 D~~~~~------gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liii 165 (759)
|+.... +..|+|++.-..+.+.+-+..++...||+||.+++.
T Consensus 132 DA~~P~~Y~~~Ve~VDviy~DVAQp~Qa~I~~~Na~~FLk~~G~~~i~ 179 (231)
T COG1889 132 DARKPEKYRHLVEKVDVIYQDVAQPNQAEILADNAEFFLKKGGYVVIA 179 (231)
T ss_pred ccCCcHHhhhhcccccEEEEecCCchHHHHHHHHHHHhcccCCeEEEE
Confidence 998876 789999997776777888999999999999976665
No 370
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.52 E-value=0.0013 Score=72.85 Aligned_cols=126 Identities=12% Similarity=0.180 Sum_probs=82.3
Q ss_pred CeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccccc
Q 004354 531 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGN 610 (759)
Q Consensus 531 ~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~ 610 (759)
.++|.+|.|.|.++..|.... .+|++||+++.+++.|++.+....-++++++.+|+.+++.........
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~--------- 267 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREF--------- 267 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhcccc---------
Confidence 469999999999999998885 389999999999999999884432346999999999998642100000
Q ss_pred ccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChhHHHHHHH
Q 004354 611 EITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVIS 690 (759)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~ 690 (759)
..... ......+||+|++|--. .| +..++++.+.+ +++++.+- |....+.+. +.
T Consensus 268 -------~~~~~-~~~~~~~~d~v~lDPPR----~G--------~~~~~l~~l~~---~~~ivYvs--C~p~tlaRD-l~ 321 (353)
T TIGR02143 268 -------RRLKG-IDLKSYNCSTIFVDPPR----AG--------LDPDTCKLVQA---YERILYIS--CNPETLKAN-LE 321 (353)
T ss_pred -------ccccc-cccccCCCCEEEECCCC----CC--------CcHHHHHHHHc---CCcEEEEE--cCHHHHHHH-HH
Confidence 00000 00001248999997532 12 23667777655 68877754 455555555 33
Q ss_pred HHH
Q 004354 691 RMK 693 (759)
Q Consensus 691 ~l~ 693 (759)
.|.
T Consensus 322 ~L~ 324 (353)
T TIGR02143 322 QLS 324 (353)
T ss_pred HHh
Confidence 443
No 371
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.51 E-value=0.00046 Score=72.54 Aligned_cols=82 Identities=15% Similarity=0.169 Sum_probs=66.4
Q ss_pred hHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC-C-
Q 004354 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-G- 130 (759)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~-g- 130 (759)
..+.+...+.. .+++.|||||+|.|.++..|++.+.. |+++++++.+++..+++.. ...+++.+.+|+.... .
T Consensus 18 v~~kIv~~a~~---~~~d~VlEIGpG~GaLT~~Ll~~~~~-v~aiEiD~~l~~~L~~~~~-~~~n~~vi~~DaLk~d~~~ 92 (259)
T COG0030 18 VIDKIVEAANI---SPGDNVLEIGPGLGALTEPLLERAAR-VTAIEIDRRLAEVLKERFA-PYDNLTVINGDALKFDFPS 92 (259)
T ss_pred HHHHHHHhcCC---CCCCeEEEECCCCCHHHHHHHhhcCe-EEEEEeCHHHHHHHHHhcc-cccceEEEeCchhcCcchh
Confidence 34445455443 56889999999999999999999775 9999999999998888764 4578999999999887 3
Q ss_pred --cccEEEeCC
Q 004354 131 --GLDALMEPE 139 (759)
Q Consensus 131 --tfD~Ii~~~ 139 (759)
.++.|+++-
T Consensus 93 l~~~~~vVaNl 103 (259)
T COG0030 93 LAQPYKVVANL 103 (259)
T ss_pred hcCCCEEEEcC
Confidence 578888763
No 372
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=97.48 E-value=0.0018 Score=70.68 Aligned_cols=103 Identities=14% Similarity=0.114 Sum_probs=86.2
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccCC---CcccEEEeCCCCh
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ---GGLDALMEPELGH 142 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~~---gtfD~Ii~~~~~~ 142 (759)
++..|||.=||-|.++..++..|...|+++|++|.+++.+++++..+. ..+..+++|..... +.+|-|+.+...
T Consensus 188 ~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p~- 266 (341)
T COG2520 188 EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLPK- 266 (341)
T ss_pred CCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCCC-
Confidence 588999999999999999999987669999999999999999875443 33889999999887 679999987532
Q ss_pred hHHHHHHHHHHHhcccCcEEEEEEcCchhh
Q 004354 143 KLGNQYLSEVKRLLKSGGKFVCLTLAESHV 172 (759)
Q Consensus 143 ~~~~~~l~ei~rvLkpGG~liiit~~~~~~ 172 (759)
....++..+.+.+++||.+.+-.+.++..
T Consensus 267 -~a~~fl~~A~~~~k~~g~iHyy~~~~e~~ 295 (341)
T COG2520 267 -SAHEFLPLALELLKDGGIIHYYEFVPEDD 295 (341)
T ss_pred -cchhhHHHHHHHhhcCcEEEEEeccchhh
Confidence 24578888888999999999998876543
No 373
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.46 E-value=0.001 Score=73.22 Aligned_cols=112 Identities=18% Similarity=0.217 Sum_probs=83.4
Q ss_pred hHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCC------C----------------------------------
Q 004354 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF------H---------------------------------- 92 (759)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~------~---------------------------------- 92 (759)
+...+...... .++..++|.=||+|++....+-.+. .
T Consensus 179 LAaAil~lagw---~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~ 255 (381)
T COG0116 179 LAAAILLLAGW---KPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELP 255 (381)
T ss_pred HHHHHHHHcCC---CCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccc
Confidence 33444444443 4556899999999999988766541 1
Q ss_pred eEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccCC---CcccEEEeCCC------Chh----HHHHHHHHHHHhcc
Q 004354 93 GITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ---GGLDALMEPEL------GHK----LGNQYLSEVKRLLK 157 (759)
Q Consensus 93 ~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~~---gtfD~Ii~~~~------~~~----~~~~~l~ei~rvLk 157 (759)
.++|+|+++.+|+.|+.++...+ ..++|.++|+.++. ..+|+|+|+.. .+. ....+.+.+++.++
T Consensus 256 ~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~ 335 (381)
T COG0116 256 IIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLA 335 (381)
T ss_pred eEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhc
Confidence 27799999999999999886655 35999999999887 58999999862 111 24566667778888
Q ss_pred cCcEEEEEEc
Q 004354 158 SGGKFVCLTL 167 (759)
Q Consensus 158 pGG~liiit~ 167 (759)
..+++++++.
T Consensus 336 ~ws~~v~tt~ 345 (381)
T COG0116 336 GWSRYVFTTS 345 (381)
T ss_pred CCceEEEEcc
Confidence 8888888875
No 374
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.46 E-value=0.00087 Score=72.36 Aligned_cols=61 Identities=25% Similarity=0.249 Sum_probs=51.5
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC-CCCCeEEEEccHHHH
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKF 591 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~-~~~rl~v~i~Da~~~ 591 (759)
...+||.||.|.|.++..|.... .++++||+|+.+++.+++.+... ..++++++.+|++++
T Consensus 36 ~~~~VLEIG~G~G~LT~~Ll~~~--~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~ 97 (294)
T PTZ00338 36 PTDTVLEIGPGTGNLTEKLLQLA--KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKT 97 (294)
T ss_pred CcCEEEEecCchHHHHHHHHHhC--CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhh
Confidence 34689999999999999888763 48999999999999999988422 246899999999875
No 375
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=97.45 E-value=0.00033 Score=71.38 Aligned_cols=106 Identities=25% Similarity=0.377 Sum_probs=68.9
Q ss_pred CCCCeEEEEcccccHHHH-HHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHH-HHHhhcccCcccccc
Q 004354 528 GKSVKAVVIGLGAGLLPM-FLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIK-FVREMKSSSATDEMS 605 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~-~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~-~l~~~~~~~~~~~~~ 605 (759)
....++|..|.|.|-.+. +|... ..+|+.||..+..++.|+++++- ..+++.-+..=|++ |..
T Consensus 54 ~~~~~alDcGAGIGRVTk~lLl~~--f~~VDlVEp~~~Fl~~a~~~l~~-~~~~v~~~~~~gLQ~f~P------------ 118 (218)
T PF05891_consen 54 PKFNRALDCGAGIGRVTKGLLLPV--FDEVDLVEPVEKFLEQAKEYLGK-DNPRVGEFYCVGLQDFTP------------ 118 (218)
T ss_dssp ---SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCC-GGCCEEEEEES-GGG---------------
T ss_pred CCcceEEecccccchhHHHHHHHh--cCEeEEeccCHHHHHHHHHHhcc-cCCCcceEEecCHhhccC------------
Confidence 356799999999997776 44444 35999999999999999999874 23455444444444 311
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCCh---HHHHHHHHHccCcCcEEEE--EecCC
Q 004354 606 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE---GSFLLTVKDALSEQGLFIV--NLVSR 680 (759)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~---~~fl~~~~~~L~~~Gilv~--N~~~~ 680 (759)
...+||+|-+=-. -.+|.+ .+||+.|+..|+|+|++++ |+...
T Consensus 119 ---------------------~~~~YDlIW~QW~-----------lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~ 166 (218)
T PF05891_consen 119 ---------------------EEGKYDLIWIQWC-----------LGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSS 166 (218)
T ss_dssp ----------------------TT-EEEEEEES------------GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESS
T ss_pred ---------------------CCCcEeEEEehHh-----------hccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCC
Confidence 1368999998221 122332 4589999999999999997 77554
No 376
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.45 E-value=0.0016 Score=63.38 Aligned_cols=111 Identities=11% Similarity=0.144 Sum_probs=80.9
Q ss_pred CCCCeEEEEcccccHHHHHHHHh-CCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHEC-MPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 606 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~-~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~ 606 (759)
.....||.+|-|+|.++..+..+ .+...++++|.+++-+..-.+.|. .++++.|||...=....
T Consensus 47 esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p-----~~~ii~gda~~l~~~l~---------- 111 (194)
T COG3963 47 ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP-----GVNIINGDAFDLRTTLG---------- 111 (194)
T ss_pred ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC-----CccccccchhhHHHHHh----------
Confidence 45568999999999999866655 467799999999999999988873 35699999987533332
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecC
Q 004354 607 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 679 (759)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~ 679 (759)
+..+..||.||.-+ +.. +-|+. .+-+.|+.+..+|..||.|+.=-.+
T Consensus 112 ------------------e~~gq~~D~viS~l----Pll--~~P~~--~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 112 ------------------EHKGQFFDSVISGL----PLL--NFPMH--RRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred ------------------hcCCCeeeeEEecc----ccc--cCcHH--HHHHHHHHHHHhcCCCCeEEEEEec
Confidence 12357899999833 111 11111 3678999999999999988754434
No 377
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=97.43 E-value=0.00023 Score=74.76 Aligned_cols=126 Identities=22% Similarity=0.275 Sum_probs=89.3
Q ss_pred HHHHHHHHhhcCCCCcc--ccccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHH
Q 004354 28 KENWDKFFTIRGIGDSF--EWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVIS 105 (759)
Q Consensus 28 ~~yWd~~y~~~~~~~~~--eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~ 105 (759)
++|.-+.|.... .+| .-+..|+..++.+... ..+..+||+|||+|.....= ..-.++|.|++...+.
T Consensus 11 qeyVh~IYd~ia--~~fs~tr~~~Wp~v~qfl~~~------~~gsv~~d~gCGngky~~~~---p~~~~ig~D~c~~l~~ 79 (293)
T KOG1331|consen 11 QEYVHSIYDKIA--THFSATRAAPWPMVRQFLDSQ------PTGSVGLDVGCGNGKYLGVN---PLCLIIGCDLCTGLLG 79 (293)
T ss_pred HHHhHHHHHHhh--hhccccccCccHHHHHHHhcc------CCcceeeecccCCcccCcCC---Ccceeeecchhhhhcc
Confidence 456556666552 223 2455666655554443 34778999999999876421 1124899999998887
Q ss_pred HHHHHhccCCCCcEEEEeecccCC---CcccEEEeCCCChhH-----HHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 106 DMLRRNVRDRSDMRWRVMDMTSMQ---GGLDALMEPELGHKL-----GNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 106 ~a~~r~~~~~~~i~f~~~D~~~~~---gtfD~Ii~~~~~~~~-----~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
-+++.. . .....+|+.+.+ .+||+.++....|+. ...+++++.|+|+|||..++..++.
T Consensus 80 ~ak~~~----~-~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~ 146 (293)
T KOG1331|consen 80 GAKRSG----G-DNVCRADALKLPFREESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVWAL 146 (293)
T ss_pred ccccCC----C-ceeehhhhhcCCCCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehh
Confidence 654432 1 167889999988 899999998766654 8899999999999999988777653
No 378
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.43 E-value=0.001 Score=74.10 Aligned_cols=127 Identities=9% Similarity=0.133 Sum_probs=82.2
Q ss_pred CeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccccc
Q 004354 531 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGN 610 (759)
Q Consensus 531 ~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~ 610 (759)
.++|.++.|.|+++..|.... .+|++||+++.+++.|++......-++++++.+|+.++++........
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~--~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~--------- 276 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNF--RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREF--------- 276 (362)
T ss_pred CeEEEEeccccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccc---------
Confidence 479999999999999888775 489999999999999999873322247999999999998764210000
Q ss_pred ccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChhHHHHHHH
Q 004354 611 EITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVIS 690 (759)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~ 690 (759)
.+.. .......+||+||+|.-- .| +..+.++.+.+ +++++.+-. ....+.+. +.
T Consensus 277 -------~~~~-~~~~~~~~~D~v~lDPPR----~G--------~~~~~l~~l~~---~~~ivyvSC--~p~tlarD-l~ 330 (362)
T PRK05031 277 -------NRLK-GIDLKSYNFSTIFVDPPR----AG--------LDDETLKLVQA---YERILYISC--NPETLCEN-LE 330 (362)
T ss_pred -------cccc-cccccCCCCCEEEECCCC----CC--------CcHHHHHHHHc---cCCEEEEEe--CHHHHHHH-HH
Confidence 0000 000002369999996521 12 34677777765 678777554 33444444 34
Q ss_pred HHHH
Q 004354 691 RMKM 694 (759)
Q Consensus 691 ~l~~ 694 (759)
.|.+
T Consensus 331 ~L~~ 334 (362)
T PRK05031 331 TLSQ 334 (362)
T ss_pred HHcC
Confidence 4443
No 379
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=97.42 E-value=0.0011 Score=72.16 Aligned_cols=59 Identities=20% Similarity=0.088 Sum_probs=47.2
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC-----CCCCeEEEEccHH
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-----QDKSLKVHITDGI 589 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~-----~~~rl~v~i~Da~ 589 (759)
...+||.||+|+|.++..|... ..+|++||+++.|++.|++.+... ...+++++.+|..
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~ 207 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLE 207 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchh
Confidence 3569999999999999888875 459999999999999999886321 1346788888853
No 380
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.41 E-value=0.0023 Score=64.97 Aligned_cols=94 Identities=19% Similarity=0.186 Sum_probs=73.2
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCC--eEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC-----------Cccc
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFH--GITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-----------GGLD 133 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~--~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~-----------gtfD 133 (759)
.++..|+||||-.|..+..+++.... .|+|+|+.|- ...+++.++++|+++-. .+.|
T Consensus 44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~----------~~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~D 113 (205)
T COG0293 44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM----------KPIPGVIFLQGDITDEDTLEKLLEALGGAPVD 113 (205)
T ss_pred cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc----------ccCCCceEEeeeccCccHHHHHHHHcCCCCcc
Confidence 56899999999999999998887332 3999999882 23467999999999876 4579
Q ss_pred EEEeCCCC---------hh----HHHHHHHHHHHhcccCcEEEEEEcCch
Q 004354 134 ALMEPELG---------HK----LGNQYLSEVKRLLKSGGKFVCLTLAES 170 (759)
Q Consensus 134 ~Ii~~~~~---------~~----~~~~~l~ei~rvLkpGG~liiit~~~~ 170 (759)
+|++.... |. .....+.-+..+|+|||.|++-.|-..
T Consensus 114 vV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~ 163 (205)
T COG0293 114 VVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGE 163 (205)
T ss_pred eEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCC
Confidence 99985422 11 156667777889999999999888544
No 381
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=97.40 E-value=0.00089 Score=65.83 Aligned_cols=130 Identities=20% Similarity=0.343 Sum_probs=83.5
Q ss_pred CCCeEEEEcccccHHHHHHHHh-CCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHEC-MPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 604 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~-~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~ 604 (759)
...+||.+|.|.|.+..-|++- |+. .++.||..+..+++|+.-- ++ ++.+++.+.|-.+- .
T Consensus 67 ~A~~VlDLGtGNG~~L~~L~~egf~~-~L~GvDYs~~AV~LA~niAe~~~~--~n~I~f~q~DI~~~--~---------- 131 (227)
T KOG1271|consen 67 QADRVLDLGTGNGHLLFQLAKEGFQS-KLTGVDYSEKAVELAQNIAERDGF--SNEIRFQQLDITDP--D---------- 131 (227)
T ss_pred cccceeeccCCchHHHHHHHHhcCCC-CccccccCHHHHHHHHHHHHhcCC--CcceeEEEeeccCC--c----------
Confidence 3349999999999887666654 433 6999999999999997543 55 34588888885542 1
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEE----EcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCC
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILI----IDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 680 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii----~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~ 680 (759)
....+||+|+ .|+-+--+.. |...+ .-++..+.+.|+|||+|++--
T Consensus 132 ---------------------~~~~qfdlvlDKGT~DAisLs~d~----~~~r~--~~Y~d~v~~ll~~~gifvItS--- 181 (227)
T KOG1271|consen 132 ---------------------FLSGQFDLVLDKGTLDAISLSPDG----PVGRL--VVYLDSVEKLLSPGGIFVITS--- 181 (227)
T ss_pred ---------------------ccccceeEEeecCceeeeecCCCC----cccce--eeehhhHhhccCCCcEEEEEe---
Confidence 1135677776 2332110000 11111 347888999999999999764
Q ss_pred ChhHHHHHHHHHHHh-cCceEEEe
Q 004354 681 SQATKDMVISRMKMV-FNHLFCLQ 703 (759)
Q Consensus 681 ~~~~~~~v~~~l~~v-F~~v~~~~ 703 (759)
+....+.+++.+... |..++.++
T Consensus 182 CN~T~dELv~~f~~~~f~~~~tvp 205 (227)
T KOG1271|consen 182 CNFTKDELVEEFENFNFEYLSTVP 205 (227)
T ss_pred cCccHHHHHHHHhcCCeEEEEeec
Confidence 444556667766655 55444444
No 382
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=97.39 E-value=0.00012 Score=74.29 Aligned_cols=105 Identities=18% Similarity=0.320 Sum_probs=81.9
Q ss_pred cCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004354 527 VGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 606 (759)
Q Consensus 527 ~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~ 606 (759)
.+.-.++|.||+|+|.+.--|+..- .+++.|||+..|++.|.+.-.+ =++.++|+..|++...
T Consensus 123 ~g~F~~~lDLGCGTGL~G~~lR~~a--~~ltGvDiS~nMl~kA~eKg~Y-----D~L~~Aea~~Fl~~~~---------- 185 (287)
T COG4976 123 LGPFRRMLDLGCGTGLTGEALRDMA--DRLTGVDISENMLAKAHEKGLY-----DTLYVAEAVLFLEDLT---------- 185 (287)
T ss_pred CCccceeeecccCcCcccHhHHHHH--hhccCCchhHHHHHHHHhccch-----HHHHHHHHHHHhhhcc----------
Confidence 3446799999999999988888874 4899999999999999988665 2567889999987544
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEE-cCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCC
Q 004354 607 VHGNEITSNNTRSCNGNCTASNARVDILII-DVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 680 (759)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~-D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~ 680 (759)
+.+||+|.. ||.. ..+.+ +.++-.+...|+|||+|++.+-.-
T Consensus 186 ---------------------~er~DLi~AaDVl~--YlG~L---------e~~~~~aa~~L~~gGlfaFSvE~l 228 (287)
T COG4976 186 ---------------------QERFDLIVAADVLP--YLGAL---------EGLFAGAAGLLAPGGLFAFSVETL 228 (287)
T ss_pred ---------------------CCcccchhhhhHHH--hhcch---------hhHHHHHHHhcCCCceEEEEeccc
Confidence 478999974 3322 11222 668889999999999999887543
No 383
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=97.35 E-value=0.00057 Score=68.37 Aligned_cols=60 Identities=18% Similarity=0.153 Sum_probs=51.7
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMK 596 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~ 596 (759)
...|||.||+|.|.|..+|.+. .++...+||+|++-+..|.+. .+.|+.+|.-+-|....
T Consensus 13 pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~r-------Gv~Viq~Dld~gL~~f~ 72 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVAR-------GVSVIQGDLDEGLADFP 72 (193)
T ss_pred CCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHHc-------CCCEEECCHHHhHhhCC
Confidence 3479999999999999999997 478999999999988888655 37899999999887765
No 384
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.35 E-value=0.00044 Score=72.65 Aligned_cols=58 Identities=28% Similarity=0.357 Sum_probs=52.9
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHH
Q 004354 530 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF 591 (759)
Q Consensus 530 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~ 591 (759)
...||.||-|.|+|+..|.+.. .+|++||||+.++.+-++.+.. .++++|+.+|++++
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~~--~~v~aiEiD~~l~~~L~~~~~~--~~n~~vi~~DaLk~ 88 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLERA--ARVTAIEIDRRLAEVLKERFAP--YDNLTVINGDALKF 88 (259)
T ss_pred CCeEEEECCCCCHHHHHHHhhc--CeEEEEEeCHHHHHHHHHhccc--ccceEEEeCchhcC
Confidence 5789999999999999999985 4799999999999999999973 57899999999987
No 385
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.34 E-value=0.0012 Score=65.52 Aligned_cols=92 Identities=20% Similarity=0.270 Sum_probs=68.2
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccc
Q 004354 530 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 609 (759)
Q Consensus 530 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~ 609 (759)
.+.|+.+|.|+|.|..-..-.-+ .+|.+||+||+.+++|++.-+- ...+++++++|..++
T Consensus 46 g~~V~DlG~GTG~La~ga~~lGa-~~V~~vdiD~~a~ei~r~N~~~-l~g~v~f~~~dv~~~------------------ 105 (198)
T COG2263 46 GKTVLDLGAGTGILAIGAALLGA-SRVLAVDIDPEALEIARANAEE-LLGDVEFVVADVSDF------------------ 105 (198)
T ss_pred CCEEEEcCCCcCHHHHHHHhcCC-cEEEEEecCHHHHHHHHHHHHh-hCCceEEEEcchhhc------------------
Confidence 35799999999998866665533 4999999999999999988742 245799999998776
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHcc
Q 004354 610 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDAL 667 (759)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L 667 (759)
..++|.+|.+. + . |.. ..+ .+..||+.+.+.-
T Consensus 106 ------------------~~~~dtvimNP--P--F-G~~--~rh-aDr~Fl~~Ale~s 137 (198)
T COG2263 106 ------------------RGKFDTVIMNP--P--F-GSQ--RRH-ADRPFLLKALEIS 137 (198)
T ss_pred ------------------CCccceEEECC--C--C-ccc--ccc-CCHHHHHHHHHhh
Confidence 26788888832 2 1 111 223 5788998887765
No 386
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=97.34 E-value=0.0011 Score=68.50 Aligned_cols=57 Identities=16% Similarity=0.198 Sum_probs=47.3
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC-CCCCeEEEEcc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITD 587 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~-~~~rl~v~i~D 587 (759)
...+||.||+|.|.++..|.... ..++++|+++.+++.|++.+.-. ..+++.++.+|
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~~--~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d 120 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARRG--AKVVASDISPQMVEEARERAPEAGLAGNITFEVGD 120 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcC
Confidence 45699999999999988887764 46999999999999999987422 22589999998
No 387
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=97.34 E-value=0.00051 Score=70.48 Aligned_cols=104 Identities=18% Similarity=0.181 Sum_probs=72.7
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC-CCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~-~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
..+-++.+|.|.|-.+..+..++ -+|.++|++++|+++|++++... .+-..+..-.|.++++.
T Consensus 33 ~h~~a~DvG~G~Gqa~~~iae~~--k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g-------------- 96 (261)
T KOG3010|consen 33 GHRLAWDVGTGNGQAARGIAEHY--KEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLG-------------- 96 (261)
T ss_pred CcceEEEeccCCCcchHHHHHhh--hhheeecCCHHHHHHhhcCCCcccccCCccccccccccccC--------------
Confidence 33479999999998888888884 48999999999999999998542 11122222233333321
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCC-CChHHHHHHHHHccCcCc-EEEEEecC
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAAD-FVEGSFLLTVKDALSEQG-LFIVNLVS 679 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~-f~~~~fl~~~~~~L~~~G-ilv~N~~~ 679 (759)
...+.|+|++ .+ ..| |--++|++.+++.|+++| ++++....
T Consensus 97 -------------------~e~SVDlI~~----Aq--------a~HWFdle~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 97 -------------------GEESVDLITA----AQ--------AVHWFDLERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred -------------------CCcceeeehh----hh--------hHHhhchHHHHHHHHHHcCCCCCEEEEEEcc
Confidence 1367899987 21 122 345889999999998866 88876655
No 388
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=97.29 E-value=0.0023 Score=66.67 Aligned_cols=125 Identities=14% Similarity=0.164 Sum_probs=89.6
Q ss_pred HHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh-CC-CeEEEEeCCHHHHHHHHHHhccC--CCCcEEEEeecccCC
Q 004354 54 RDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GF-HGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTSMQ 129 (759)
Q Consensus 54 ~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~-G~-~~VtgIDiS~~~I~~a~~r~~~~--~~~i~f~~~D~~~~~ 129 (759)
..++..++.. .|+.+|||-|.|+|.++..+++. +. .+++..|+-+.-.+.|++.++.. ..++++.+-|+....
T Consensus 94 ia~I~~~L~i---~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~G 170 (314)
T KOG2915|consen 94 IAMILSMLEI---RPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSG 170 (314)
T ss_pred HHHHHHHhcC---CCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCC
Confidence 3455666665 79999999999999999999886 32 36999999988888888877554 357899999987765
Q ss_pred -----CcccEEEeCCCChhHHHHHHHHHHHhcccCc-EEEEEEcCchhhhhhhccccCCCc
Q 004354 130 -----GGLDALMEPELGHKLGNQYLSEVKRLLKSGG-KFVCLTLAESHVLGLLFPKFRFGW 184 (759)
Q Consensus 130 -----gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG-~liiit~~~~~~~~~l~~~~~~~w 184 (759)
+.+|+|+..-..+|.. +-.+..+||.+| ++++++..-+.+.+........+|
T Consensus 171 F~~ks~~aDaVFLDlPaPw~A---iPha~~~lk~~g~r~csFSPCIEQvqrtce~l~~~gf 228 (314)
T KOG2915|consen 171 FLIKSLKADAVFLDLPAPWEA---IPHAAKILKDEGGRLCSFSPCIEQVQRTCEALRSLGF 228 (314)
T ss_pred ccccccccceEEEcCCChhhh---hhhhHHHhhhcCceEEeccHHHHHHHHHHHHHHhCCC
Confidence 7899999976555543 333344777655 788887665544444333334466
No 389
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=97.25 E-value=0.0015 Score=78.53 Aligned_cols=108 Identities=18% Similarity=0.215 Sum_probs=77.3
Q ss_pred CCCCeEEEEcccccHHHHHHHHhC-------C-----CCcEEEEEcCHH---HHHHH-----------Hhhc--------
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECM-------P-----FVGIEAVELDLT---MLNLA-----------EDYF-------- 573 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~-------p-----~~~i~~VEiDp~---v~~vA-----------~~~F-------- 573 (759)
....+|+.+|.|+|.....+...+ | .+++..+|.+|. -+.-+ +...
T Consensus 56 ~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (662)
T PRK01747 56 RRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLP 135 (662)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCC
Confidence 445899999999995433333222 3 358999998762 22111 1110
Q ss_pred CCC----CCC--CeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCC
Q 004354 574 GFT----QDK--SLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGM 647 (759)
Q Consensus 574 gl~----~~~--rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~ 647 (759)
|+. ++. ++++++||+.+.+.+.. .++|+|++|.|++..
T Consensus 136 g~~~~~~~~~~~~l~l~~gd~~~~~~~~~--------------------------------~~~d~~~lD~FsP~~---- 179 (662)
T PRK01747 136 GCHRLLFDDGRVTLDLWFGDANELLPQLD--------------------------------ARADAWFLDGFAPAK---- 179 (662)
T ss_pred CceEEEecCCcEEEEEEecCHHHHHHhcc--------------------------------ccccEEEeCCCCCcc----
Confidence 210 122 56789999999998764 469999999999853
Q ss_pred CcCCCCCChHHHHHHHHHccCcCcEEE
Q 004354 648 TCPAADFVEGSFLLTVKDALSEQGLFI 674 (759)
Q Consensus 648 scPp~~f~~~~fl~~~~~~L~~~Gilv 674 (759)
.+++.+.++|..+.++++|+|.|+
T Consensus 180 ---np~~W~~~~~~~l~~~~~~~~~~~ 203 (662)
T PRK01747 180 ---NPDMWSPNLFNALARLARPGATLA 203 (662)
T ss_pred ---ChhhccHHHHHHHHHHhCCCCEEE
Confidence 688999999999999999999998
No 390
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.25 E-value=0.0017 Score=75.88 Aligned_cols=72 Identities=17% Similarity=0.212 Sum_probs=51.5
Q ss_pred CCCeEEEECCCcchhHHHHHHhC--------C-CeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeecccC-----C---
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAG--------F-HGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSM-----Q--- 129 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G--------~-~~VtgIDiS~~~I~~a~~r~~~~~-~~i~f~~~D~~~~-----~--- 129 (759)
...+|||.|||+|.+...+++.. . .+++|+|+++.++..++.++.... ..+...+.|.... .
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 34689999999999998887642 1 358999999999998887764322 2344454443221 1
Q ss_pred CcccEEEeCC
Q 004354 130 GGLDALMEPE 139 (759)
Q Consensus 130 gtfD~Ii~~~ 139 (759)
+.||+|++++
T Consensus 111 ~~fD~IIgNP 120 (524)
T TIGR02987 111 DLFDIVITNP 120 (524)
T ss_pred CcccEEEeCC
Confidence 6899999976
No 391
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.24 E-value=0.002 Score=65.95 Aligned_cols=98 Identities=13% Similarity=0.010 Sum_probs=74.3
Q ss_pred CCCeEEEECCCcchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHhccC--CCCcEEEEeecccCC---------CcccE
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAG--FHGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTSMQ---------GGLDA 134 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G--~~~VtgIDiS~~~I~~a~~r~~~~--~~~i~f~~~D~~~~~---------gtfD~ 134 (759)
...+.||||.=||.-+..++..- -.+|+++|+++...+.+.+..+.. ...|+++++++.+.- ++||.
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDf 152 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDF 152 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeE
Confidence 45799999987777776666541 125999999999999886655333 357999999876542 89999
Q ss_pred EEeCCCChhHHHHHHHHHHHhcccCcEEEEEE
Q 004354 135 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 135 Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit 166 (759)
++....-. ....++.++.+++|+||.+++--
T Consensus 153 aFvDadK~-nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 153 AFVDADKD-NYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred EEEccchH-HHHHHHHHHHhhcccccEEEEec
Confidence 99975422 23489999999999999988653
No 392
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.24 E-value=0.0038 Score=61.57 Aligned_cols=123 Identities=20% Similarity=0.323 Sum_probs=87.5
Q ss_pred CCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
.+.=+|.||.|.|....||.... |+....+.||+|...++.++---. +..++.++..|-..-++.
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~-n~~~~~~V~tdl~~~l~~------------- 108 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARC-NRVHIDVVRTDLLSGLRN------------- 108 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHh-cCCccceeehhHHhhhcc-------------
Confidence 46679999999999999999876 667888999999999986655432 345688999987666654
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCC-----------------ChHHHHHHHHHccCcC
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF-----------------VEGSFLLTVKDALSEQ 670 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f-----------------~~~~fl~~~~~~L~~~ 670 (759)
++.|++++.- + .+..++... +...++..+..+|+|.
T Consensus 109 ---------------------~~VDvLvfNP--P----YVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~ 161 (209)
T KOG3191|consen 109 ---------------------ESVDVLVFNP--P----YVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPR 161 (209)
T ss_pred ---------------------CCccEEEECC--C----cCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcC
Confidence 4578887722 1 011111111 2567888899999999
Q ss_pred cEEEEEecCCChhHHHHHHHHHHH
Q 004354 671 GLFIVNLVSRSQATKDMVISRMKM 694 (759)
Q Consensus 671 Gilv~N~~~~~~~~~~~v~~~l~~ 694 (759)
|+|-++...++.. .+++..++.
T Consensus 162 Gv~Ylv~~~~N~p--~ei~k~l~~ 183 (209)
T KOG3191|consen 162 GVFYLVALRANKP--KEILKILEK 183 (209)
T ss_pred ceEEeeehhhcCH--HHHHHHHhh
Confidence 9999998776544 345665543
No 393
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=97.22 E-value=0.0021 Score=60.38 Aligned_cols=94 Identities=14% Similarity=0.108 Sum_probs=63.7
Q ss_pred CCCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChH
Q 004354 578 DKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEG 657 (759)
Q Consensus 578 ~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~ 657 (759)
.-++++++||+.+.+.+.. ..+|+|++|.+++.. .+++.+.
T Consensus 30 ~v~L~L~~gDa~~~l~~l~--------------------------------~~~Da~ylDgFsP~~-------nPelWs~ 70 (124)
T PF05430_consen 30 NVTLTLWFGDAREMLPQLD--------------------------------ARFDAWYLDGFSPAK-------NPELWSE 70 (124)
T ss_dssp TEEEEEEES-HHHHHHHB---------------------------------T-EEEEEE-SS-TTT-------SGGGSSH
T ss_pred CEEEEEEEcHHHHHHHhCc--------------------------------ccCCEEEecCCCCcC-------CcccCCH
Confidence 3468999999999999875 679999999999853 6789999
Q ss_pred HHHHHHHHccCcCcEEEEEecCCChhHHHHHHHHHHHhcCceEEEeecCCccEEEEEec
Q 004354 658 SFLLTVKDALSEQGLFIVNLVSRSQATKDMVISRMKMVFNHLFCLQLEEDVNLVLFGLS 716 (759)
Q Consensus 658 ~fl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l~~vF~~v~~~~~~~~~N~Vl~a~~ 716 (759)
++++.+.++++|||+|+ ..+.... |-..|.++==.|...+-...-.+++.|.+
T Consensus 71 e~~~~l~~~~~~~~~l~--Tys~a~~----Vr~~L~~aGF~v~~~~g~g~Kr~~~~a~~ 123 (124)
T PF05430_consen 71 ELFKKLARLSKPGGTLA--TYSSAGA----VRRALQQAGFEVEKVPGFGRKREMLRAVK 123 (124)
T ss_dssp HHHHHHHHHEEEEEEEE--ES--BHH----HHHHHHHCTEEEEEEE-STTSSEEEEEEC
T ss_pred HHHHHHHHHhCCCcEEE--EeechHH----HHHHHHHcCCEEEEcCCCCCcchheEEEc
Confidence 99999999999999988 3334444 33444444324555554445566776654
No 394
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.0013 Score=66.26 Aligned_cols=101 Identities=15% Similarity=0.206 Sum_probs=75.1
Q ss_pred CCCeEEEEcccccHHHHHHHHhCC--CCcEEEEEcCHHHHHHHHhhcCC----------CCCCCeEEEEccHHHHHHhhc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMP--FVGIEAVELDLTMLNLAEDYFGF----------TQDKSLKVHITDGIKFVREMK 596 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p--~~~i~~VEiDp~v~~vA~~~Fgl----------~~~~rl~v~i~Da~~~l~~~~ 596 (759)
...+.|.||.|+|.|+........ +...+.||.=|++++.+++.... -...++.++++||+.--.+
T Consensus 82 pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e-- 159 (237)
T KOG1661|consen 82 PGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE-- 159 (237)
T ss_pred cCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc--
Confidence 457899999999988776665542 33449999999999999987622 1347899999999875222
Q ss_pred ccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEE
Q 004354 597 SSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 676 (759)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N 676 (759)
..+||.|.+-+..+ +..+.+-+.|+++|-+++-
T Consensus 160 -------------------------------~a~YDaIhvGAaa~----------------~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 160 -------------------------------QAPYDAIHVGAAAS----------------ELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred -------------------------------cCCcceEEEccCcc----------------ccHHHHHHhhccCCeEEEe
Confidence 46899999954333 3456677789999988877
Q ss_pred ec
Q 004354 677 LV 678 (759)
Q Consensus 677 ~~ 678 (759)
+.
T Consensus 193 ~~ 194 (237)
T KOG1661|consen 193 VG 194 (237)
T ss_pred ec
Confidence 65
No 395
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.19 E-value=6.9e-05 Score=74.61 Aligned_cols=92 Identities=16% Similarity=0.295 Sum_probs=67.5
Q ss_pred CCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCCCcccEEEeCCCCh--hHHH
Q 004354 69 PPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQGGLDALMEPELGH--KLGN 146 (759)
Q Consensus 69 ~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~gtfD~Ii~~~~~~--~~~~ 146 (759)
+.++||+|+|.|..+..++.. +.+|++.+.|..|..+.+++.-.-...++|.+.| -.||+|.|.+... ...-
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~-feevyATElS~tMr~rL~kk~ynVl~~~ew~~t~-----~k~dli~clNlLDRc~~p~ 186 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPT-FEEVYATELSWTMRDRLKKKNYNVLTEIEWLQTD-----VKLDLILCLNLLDRCFDPF 186 (288)
T ss_pred CeeEEeccCCCcchhhhhcch-HHHHHHHHhhHHHHHHHhhcCCceeeehhhhhcC-----ceeehHHHHHHHHhhcChH
Confidence 468999999999999999876 7779999999988776655431111223333333 3599999976432 2378
Q ss_pred HHHHHHHHhccc-CcEEEEEE
Q 004354 147 QYLSEVKRLLKS-GGKFVCLT 166 (759)
Q Consensus 147 ~~l~ei~rvLkp-GG~liiit 166 (759)
++++.++.+|+| +|+.|+.-
T Consensus 187 kLL~Di~~vl~psngrvivaL 207 (288)
T KOG3987|consen 187 KLLEDIHLVLAPSNGRVIVAL 207 (288)
T ss_pred HHHHHHHHHhccCCCcEEEEE
Confidence 999999999999 88877654
No 396
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.18 E-value=0.0028 Score=64.84 Aligned_cols=140 Identities=21% Similarity=0.237 Sum_probs=95.0
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCH----HHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDL----TMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATD 602 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp----~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~ 602 (759)
....+||-||...|+..+++..... .-.|-+||..| ..+++|++.- ++--+++||+.--+-..
T Consensus 72 k~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~------NIiPIl~DAr~P~~Y~~------ 139 (229)
T PF01269_consen 72 KPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRP------NIIPILEDARHPEKYRM------ 139 (229)
T ss_dssp -TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHST------TEEEEES-TTSGGGGTT------
T ss_pred CCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCC------ceeeeeccCCChHHhhc------
Confidence 3457999999999999999999875 66999999999 7788898874 46778999885422111
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCC--
Q 004354 603 EMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR-- 680 (759)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~-- 680 (759)
--..+|+|+.|+..++. .+=+..+++..|++||.+++-+-++
T Consensus 140 ------------------------lv~~VDvI~~DVaQp~Q------------a~I~~~Na~~fLk~gG~~~i~iKa~si 183 (229)
T PF01269_consen 140 ------------------------LVEMVDVIFQDVAQPDQ------------ARIAALNARHFLKPGGHLIISIKARSI 183 (229)
T ss_dssp ------------------------TS--EEEEEEE-SSTTH------------HHHHHHHHHHHEEEEEEEEEEEEHHHH
T ss_pred ------------------------ccccccEEEecCCChHH------------HHHHHHHHHhhccCCcEEEEEEecCcc
Confidence 12579999999976652 2557888889999999887655332
Q ss_pred -----ChhHHHHHHHHHHHh-cCceEEEeec--CCccEEEEEe
Q 004354 681 -----SQATKDMVISRMKMV-FNHLFCLQLE--EDVNLVLFGL 715 (759)
Q Consensus 681 -----~~~~~~~v~~~l~~v-F~~v~~~~~~--~~~N~Vl~a~ 715 (759)
........+++|++. |.-+-.+..+ +..+.+++|.
T Consensus 184 D~t~~p~~vf~~e~~~L~~~~~~~~e~i~LePy~~dH~~vv~~ 226 (229)
T PF01269_consen 184 DSTADPEEVFAEEVKKLKEEGFKPLEQITLEPYERDHAMVVGR 226 (229)
T ss_dssp -SSSSHHHHHHHHHHHHHCTTCEEEEEEE-TTTSTTEEEEEEE
T ss_pred cCcCCHHHHHHHHHHHHHHcCCChheEeccCCCCCCcEEEEEE
Confidence 234456668888874 7654444443 3445555553
No 397
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.16 E-value=0.0061 Score=64.90 Aligned_cols=125 Identities=16% Similarity=0.251 Sum_probs=74.4
Q ss_pred ccccccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHH-h-CC-CeEEEEeCCHHHHHHHHHHhcc---CCC
Q 004354 43 SFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYD-A-GF-HGITNVDFSKVVISDMLRRNVR---DRS 116 (759)
Q Consensus 43 ~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~-~-G~-~~VtgIDiS~~~I~~a~~r~~~---~~~ 116 (759)
.|.+|..|..+.+.=...+.......+.+|+=||||.=-++.-+.. . |. ..|+++|+++.+++.+++-... -..
T Consensus 95 ~FpYy~nY~~L~~lE~~~l~~~~~~~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~ 174 (276)
T PF03059_consen 95 SFPYYPNYEKLVRLEYAALRIHAGDPPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSK 174 (276)
T ss_dssp TSTTHHHHHHHHHHHHH-HTT--TT---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-S
T ss_pred cCCcHHHHHHHHHHHHHHHhhcCCcccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccC
Confidence 3446666666554433444331112345999999998777755543 2 32 3599999999999998876542 246
Q ss_pred CcEEEEeecccCC---CcccEEEeCCCC---hhHHHHHHHHHHHhcccCcEEEEEEc
Q 004354 117 DMRWRVMDMTSMQ---GGLDALMEPELG---HKLGNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 117 ~i~f~~~D~~~~~---gtfD~Ii~~~~~---~~~~~~~l~ei~rvLkpGG~liiit~ 167 (759)
++.|+++|..+.. ..||+|+....- .....+++.++.+.++||..+++-+.
T Consensus 175 ~m~f~~~d~~~~~~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa 231 (276)
T PF03059_consen 175 RMSFITADVLDVTYDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVRSA 231 (276)
T ss_dssp SEEEEES-GGGG-GG----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEEE-
T ss_pred CeEEEecchhccccccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEecc
Confidence 7999999998765 789999986522 22378999999999999999888754
No 398
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.16 E-value=0.0021 Score=64.04 Aligned_cols=105 Identities=13% Similarity=0.174 Sum_probs=79.2
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCCCcccEEEeCCC--ChhHH
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQGGLDALMEPEL--GHKLG 145 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~gtfD~Ii~~~~--~~~~~ 145 (759)
.+.+|||+|.|+|..+..-+..|...|+..|+.|-.+...+-+...++..+.+...|....+..||+++..+. .+...
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g~~~~~Dl~LagDlfy~~~~a 158 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIGSPPAFDLLLAGDLFYNHTEA 158 (218)
T ss_pred ccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEeeccccCCCcceeEEEeeceecCchHH
Confidence 4689999999999999999999998899999998877766656566777899999998874589999999874 33446
Q ss_pred HHHHHHHHHhcccCc-EEEEEEcCchhhh
Q 004354 146 NQYLSEVKRLLKSGG-KFVCLTLAESHVL 173 (759)
Q Consensus 146 ~~~l~ei~rvLkpGG-~liiit~~~~~~~ 173 (759)
.+++. +.+.|+..| .+++.+.+.++..
T Consensus 159 ~~l~~-~~~~l~~~g~~vlvgdp~R~~lp 186 (218)
T COG3897 159 DRLIP-WKDRLAEAGAAVLVGDPGRAYLP 186 (218)
T ss_pred HHHHH-HHHHHHhCCCEEEEeCCCCCCCc
Confidence 67777 555555444 4555555444443
No 399
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.15 E-value=0.00055 Score=75.69 Aligned_cols=101 Identities=19% Similarity=0.192 Sum_probs=81.0
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccC--CCCcEEEEeecccCC---CcccEEEeCCCC
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTSMQ---GGLDALMEPELG 141 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~--~~~i~f~~~D~~~~~---gtfD~Ii~~~~~ 141 (759)
.+...++|+|||.|..+.++...+..+++|+|.++.-+..+....... .....++..|+.+++ ++||.+.+.+..
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~ 188 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVV 188 (364)
T ss_pred cccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeec
Confidence 456689999999999999998876667999999998877665544222 234566888998887 899999997754
Q ss_pred hhH--HHHHHHHHHHhcccCcEEEEEEc
Q 004354 142 HKL--GNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 142 ~~~--~~~~l~ei~rvLkpGG~liiit~ 167 (759)
.+. ....++|+.|+++|||++++..+
T Consensus 189 ~~~~~~~~~y~Ei~rv~kpGG~~i~~e~ 216 (364)
T KOG1269|consen 189 CHAPDLEKVYAEIYRVLKPGGLFIVKEW 216 (364)
T ss_pred ccCCcHHHHHHHHhcccCCCceEEeHHH
Confidence 433 88999999999999999998764
No 400
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=97.15 E-value=0.0043 Score=62.08 Aligned_cols=109 Identities=15% Similarity=0.205 Sum_probs=78.8
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc-CCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF-GFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F-gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
...++|.+=.|.|+|..-..... -..++.||.|...+.+.+++. .+....+.+++..|+..+++....
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRG-A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~---------- 111 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRG-AARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGT---------- 111 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCC-CceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCC----------
Confidence 34799999999999986555552 349999999999999999997 333368899999999999888651
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCCh-HHHHHH--HHHccCcCcEEEEEec
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE-GSFLLT--VKDALSEQGLFIVNLV 678 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~-~~fl~~--~~~~L~~~Gilv~N~~ 678 (759)
...||+|++|.-= ...++. ..-+.. -...|+|+|++++---
T Consensus 112 --------------------~~~FDlVflDPPy----------~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 112 --------------------REPFDLVFLDPPY----------AKGLLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred --------------------CCcccEEEeCCCC----------ccchhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 2359999996411 122342 222222 2456999999997653
No 401
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.13 E-value=0.00022 Score=80.33 Aligned_cols=93 Identities=22% Similarity=0.256 Sum_probs=61.1
Q ss_pred CeEEEECCCcchhHHHHHHhCCCeE--EEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC---CcccEEEeCCC-Chh
Q 004354 70 PQILVPGCGNSRLSEHLYDAGFHGI--TNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ---GGLDALMEPEL-GHK 143 (759)
Q Consensus 70 ~~ILDlGCG~G~ls~~L~~~G~~~V--tgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~---gtfD~Ii~~~~-~~~ 143 (759)
..+||+|||+|.++.+|.+++..-+ .--|..+..++.|.+|- .|.+ +-.+--..++ ++||+|-|..- ..|
T Consensus 119 R~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRG---vpa~-~~~~~s~rLPfp~~~fDmvHcsrc~i~W 194 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERG---VPAM-IGVLGSQRLPFPSNAFDMVHCSRCLIPW 194 (506)
T ss_pred EEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcC---cchh-hhhhccccccCCccchhhhhcccccccc
Confidence 4699999999999999999875411 11255556666665552 1211 1111123344 89999998652 222
Q ss_pred H--HHHHHHHHHHhcccCcEEEEEE
Q 004354 144 L--GNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 144 ~--~~~~l~ei~rvLkpGG~liiit 166 (759)
. -..+|-++.|+|+|||+|+...
T Consensus 195 ~~~~g~~l~evdRvLRpGGyfv~S~ 219 (506)
T PF03141_consen 195 HPNDGFLLFEVDRVLRPGGYFVLSG 219 (506)
T ss_pred hhcccceeehhhhhhccCceEEecC
Confidence 2 3458899999999999988664
No 402
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.13 E-value=0.00092 Score=66.70 Aligned_cols=142 Identities=20% Similarity=0.242 Sum_probs=87.7
Q ss_pred CCCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccH-----HHHHHhhcccCcc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDG-----IKFVREMKSSSAT 601 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da-----~~~l~~~~~~~~~ 601 (759)
+...+||.||.+.|+.+.++.+.. +..+|.+||+-+. .+.+.+..+.+|. .+.+.+..
T Consensus 22 ~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~~~~~~i~~d~~~~~~~~~i~~~~----- 85 (181)
T PF01728_consen 22 GKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPLQNVSFIQGDITNPENIKDIRKLL----- 85 (181)
T ss_dssp TTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS-TTEEBTTGGGEEEEHSHHGGGSH-----
T ss_pred ccccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccccceeeeecccchhhHHHhhhhhc-----
Confidence 466899999999999999999987 5679999999877 1113344444443 22222211
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCC----ChHHHHHHHHHccCcCcEEEEEe
Q 004354 602 DEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF----VEGSFLLTVKDALSEQGLFIVNL 677 (759)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f----~~~~fl~~~~~~L~~~Gilv~N~ 677 (759)
.....++|+|+.|+-..- .|.... .++ +....+..+...|++||.||+-+
T Consensus 86 -----------------------~~~~~~~dlv~~D~~~~~--~g~~~~-d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~ 139 (181)
T PF01728_consen 86 -----------------------PESGEKFDLVLSDMAPNV--SGDRNI-DEFISIRLILSQLLLALELLKPGGTFVIKV 139 (181)
T ss_dssp -----------------------GTTTCSESEEEE---------SSHHS-SHHHHHHHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred -----------------------cccccCcceeccccccCC--CCchhh-HHHHHHHHHHHHHHHHHhhhcCCCEEEEEe
Confidence 011368999999982221 111000 011 12334456667799999999988
Q ss_pred cCCChhHHHHHHHHHHHhcCceEEEeecC---CccEEEE
Q 004354 678 VSRSQATKDMVISRMKMVFNHLFCLQLEE---DVNLVLF 713 (759)
Q Consensus 678 ~~~~~~~~~~v~~~l~~vF~~v~~~~~~~---~~N~Vl~ 713 (759)
...... . .++..++..|..+..++... ..|++.+
T Consensus 140 ~~~~~~-~-~~~~~l~~~F~~v~~~Kp~~sr~~s~E~Yl 176 (181)
T PF01728_consen 140 FKGPEI-E-ELIYLLKRCFSKVKIVKPPSSRSESSEEYL 176 (181)
T ss_dssp SSSTTS-H-HHHHHHHHHHHHEEEEE-TTSBTTCBEEEE
T ss_pred ccCccH-H-HHHHHHHhCCeEEEEEECcCCCCCccEEEE
Confidence 765444 3 78999999999999888643 4566544
No 403
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.12 E-value=0.0062 Score=58.19 Aligned_cols=114 Identities=12% Similarity=0.148 Sum_probs=76.0
Q ss_pred eEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccCC-----CcccEEEeCC-----CC------hhHHHHHHHHHHH
Q 004354 93 GITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ-----GGLDALMEPE-----LG------HKLGNQYLSEVKR 154 (759)
Q Consensus 93 ~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~~-----gtfD~Ii~~~-----~~------~~~~~~~l~ei~r 154 (759)
+|+|.||-+.+|+..++++.... .++++++.+-.++. +..|+++.+- .. ...-...++.+.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~ 80 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALE 80 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHH
Confidence 48999999999999999986543 36899888877776 3899999742 11 1226678889999
Q ss_pred hcccCcEEEEEEcCc-h------hhhhhhcccc-CCCceEEEEEeCCCCCCCCCceEEEEEEEe
Q 004354 155 LLKSGGKFVCLTLAE-S------HVLGLLFPKF-RFGWKMSVHAIPQKSSSEPSLQTFMVVADK 210 (759)
Q Consensus 155 vLkpGG~liiit~~~-~------~~~~~l~~~~-~~~w~v~~~~~~~~~~~~~~~~~f~~v~~K 210 (759)
+|+|||.++++.|.. + .....++... ...|.+..+...+ ...-|+++++.+|
T Consensus 81 lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L~~~~~~V~~~~~~N----~~~~pp~l~~ieK 140 (140)
T PF06962_consen 81 LLKPGGIITIVVYPGHPGGKEESEAVEEFLASLDQKEFNVLKYQFIN----QKNNPPLLVIIEK 140 (140)
T ss_dssp HEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS-TTTEEEEEEEESS-----SS---EEEEEEE
T ss_pred hhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCcceEEEEEEEccC----CCCCCCEEEEEEC
Confidence 999999999998852 2 2223333333 3489998888876 3456888888765
No 404
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=97.11 E-value=0.0011 Score=70.85 Aligned_cols=58 Identities=26% Similarity=0.358 Sum_probs=51.2
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHH
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF 591 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~ 591 (759)
...+||.||.|.|.++..|....+ +|++||+|+.+++.+++.+. +++++++.+|+.++
T Consensus 42 ~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~---~~~v~~i~~D~~~~ 99 (272)
T PRK00274 42 PGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFA---EDNLTIIEGDALKV 99 (272)
T ss_pred CcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhc---cCceEEEEChhhcC
Confidence 446899999999999999998854 89999999999999999874 36899999998875
No 405
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=97.11 E-value=0.0007 Score=66.46 Aligned_cols=68 Identities=10% Similarity=0.150 Sum_probs=51.3
Q ss_pred eEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccC--CCCcEEEEeecccCC-----Cc-ccEEEeCC
Q 004354 71 QILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTSMQ-----GG-LDALMEPE 139 (759)
Q Consensus 71 ~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~--~~~i~f~~~D~~~~~-----gt-fD~Ii~~~ 139 (759)
.|+|+.||.|..+.++++. +.+|++||+++.-++.++.++.-- ..+++|+++|..+.. .. +|+|++++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp EEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred EEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence 6999999999999999988 667999999999999888876544 347999999998765 22 79999754
No 406
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=97.10 E-value=0.0028 Score=62.22 Aligned_cols=82 Identities=10% Similarity=0.054 Sum_probs=57.0
Q ss_pred EEEEcCHHHHHHHHhhcCCC---CCCCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeE
Q 004354 557 EAVELDLTMLNLAEDYFGFT---QDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDI 633 (759)
Q Consensus 557 ~~VEiDp~v~~vA~~~Fgl~---~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~ 633 (759)
++||+++.|+++|++..... ..++++++++|+.+. . ..+..||+
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~l----p-----------------------------~~~~~fD~ 47 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDL----P-----------------------------FDDCEFDA 47 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhC----C-----------------------------CCCCCeeE
Confidence 47999999999998765321 135799999998764 1 11367999
Q ss_pred EEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCC
Q 004354 634 LIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS 681 (759)
Q Consensus 634 Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~ 681 (759)
|++-. ....+. --..+|+.+++.|+|||.|++--+...
T Consensus 48 v~~~~----~l~~~~------d~~~~l~ei~rvLkpGG~l~i~d~~~~ 85 (160)
T PLN02232 48 VTMGY----GLRNVV------DRLRAMKEMYRVLKPGSRVSILDFNKS 85 (160)
T ss_pred EEecc----hhhcCC------CHHHHHHHHHHHcCcCeEEEEEECCCC
Confidence 99721 111111 126799999999999999887655543
No 407
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.07 E-value=0.0026 Score=68.51 Aligned_cols=65 Identities=12% Similarity=-0.019 Sum_probs=56.0
Q ss_pred CCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhc
Q 004354 530 SVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMK 596 (759)
Q Consensus 530 ~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~ 596 (759)
...++..++|+|.-+..+...+| ..+|.++|.||.+++.|++.+. +.+|++++++|..++.....
T Consensus 20 g~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~--~~~ri~~i~~~f~~l~~~l~ 85 (296)
T PRK00050 20 DGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLK--PFGRFTLVHGNFSNLKEVLA 85 (296)
T ss_pred CCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhc--cCCcEEEEeCCHHHHHHHHH
Confidence 35899999999999999998886 6799999999999999998763 14689999999999876554
No 408
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=97.03 E-value=0.0021 Score=65.03 Aligned_cols=55 Identities=18% Similarity=0.090 Sum_probs=44.2
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHH
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF 591 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~ 591 (759)
...+||.||.|.|.+...+.... ...+++||+++.+++.|++. +++++.+|+.+.
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~~-------~~~~~~~d~~~~ 67 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVAR-------GVNVIQGDLDEG 67 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHHc-------CCeEEEEEhhhc
Confidence 34689999999999988887663 45789999999999999752 468888887654
No 409
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.02 E-value=0.0096 Score=64.03 Aligned_cols=160 Identities=13% Similarity=0.106 Sum_probs=114.2
Q ss_pred CccchHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhc---CC
Q 004354 500 GYLASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GF 575 (759)
Q Consensus 500 ~~L~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~F---gl 575 (759)
+++...-...|+.+..|.+ ....+||.+..|-|+=+..|...++ ...|+++|+++.-+...+.++ |.
T Consensus 65 G~~~vQd~sS~l~~~~L~~---------~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~ 135 (283)
T PF01189_consen 65 GLFYVQDESSQLVALALDP---------QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGV 135 (283)
T ss_dssp TSEEEHHHHHHHHHHHHTT---------TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-
T ss_pred CcEEecccccccccccccc---------cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCC
Confidence 3443334455555554432 3446799999999988888888886 569999999999998888765 54
Q ss_pred CCCCCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCC--
Q 004354 576 TQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAAD-- 653 (759)
Q Consensus 576 ~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~-- 653 (759)
..+.++..|+..+..... ...||.|++|+-.+.. +-+.-.|..
T Consensus 136 ---~~v~~~~~D~~~~~~~~~-------------------------------~~~fd~VlvDaPCSg~-G~i~r~p~~~~ 180 (283)
T PF01189_consen 136 ---FNVIVINADARKLDPKKP-------------------------------ESKFDRVLVDAPCSGL-GTIRRNPDIKW 180 (283)
T ss_dssp ---SSEEEEESHHHHHHHHHH-------------------------------TTTEEEEEEECSCCCG-GGTTTCTTHHH
T ss_pred ---ceEEEEeecccccccccc-------------------------------ccccchhhcCCCccch-hhhhhccchhh
Confidence 568888899999976654 2469999999966532 111111211
Q ss_pred -----------CChHHHHHHHHHcc----CcCcEEEEEecCCChhHHHHHHHHHHHhcCceEEEe
Q 004354 654 -----------FVEGSFLLTVKDAL----SEQGLFIVNLVSRSQATKDMVISRMKMVFNHLFCLQ 703 (759)
Q Consensus 654 -----------f~~~~fl~~~~~~L----~~~Gilv~N~~~~~~~~~~~v~~~l~~vF~~v~~~~ 703 (759)
.++.+.|+.+.+.| +|||.+|.-.-+-..+.-+.+++.+-+-++......
T Consensus 181 ~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eENE~vV~~fl~~~~~~~l~~ 245 (283)
T PF01189_consen 181 RRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEENEEVVEKFLKRHPDFELVP 245 (283)
T ss_dssp HE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGGTHHHHHHHHHHSTSEEEEC
T ss_pred cccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHHHHHHHHHHHHhCCCcEEEe
Confidence 23778899999999 999999998866666666778888777777655444
No 410
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=97.01 E-value=0.004 Score=62.00 Aligned_cols=124 Identities=15% Similarity=0.202 Sum_probs=72.0
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC---CCCCeEEEEccHHHHH-HhhcccCcccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT---QDKSLKVHITDGIKFV-REMKSSSATDE 603 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~---~~~rl~v~i~Da~~~l-~~~~~~~~~~~ 603 (759)
...++||.||.|.|...+.+....+..+|++-|+++ +++..+...... ...++++..-|=-+-+ ....
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~------- 115 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLL------- 115 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHH-------
T ss_pred cCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCccccccc-------
Confidence 566899999999999988888886677999999999 888888876432 2456666664311101 1111
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEE-cCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCCh
Q 004354 604 MSVVHGNEITSNNTRSCNGNCTASNARVDILII-DVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQ 682 (759)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~-D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~ 682 (759)
...+||+||. |+--. .-.-+.++..++.+|+++|.+++-...|..
T Consensus 116 -----------------------~~~~~D~IlasDv~Y~-----------~~~~~~L~~tl~~ll~~~~~vl~~~~~R~~ 161 (173)
T PF10294_consen 116 -----------------------EPHSFDVILASDVLYD-----------EELFEPLVRTLKRLLKPNGKVLLAYKRRRK 161 (173)
T ss_dssp -----------------------S-SSBSEEEEES--S------------GGGHHHHHHHHHHHBTT-TTEEEEEE-S-T
T ss_pred -----------------------ccccCCEEEEecccch-----------HHHHHHHHHHHHHHhCCCCEEEEEeCEecH
Confidence 1257999996 43111 123378999999999999886666655644
Q ss_pred hHHHHHHHHHHH
Q 004354 683 ATKDMVISRMKM 694 (759)
Q Consensus 683 ~~~~~v~~~l~~ 694 (759)
.. ..+++++++
T Consensus 162 ~~-~~F~~~~~k 172 (173)
T PF10294_consen 162 SE-QEFFDRLKK 172 (173)
T ss_dssp GG-CHHHHHH--
T ss_pred HH-HHHHHHhhh
Confidence 33 345666654
No 411
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=97.01 E-value=0.0074 Score=66.99 Aligned_cols=103 Identities=19% Similarity=0.179 Sum_probs=80.8
Q ss_pred CCCCCeEEEECCCcchhHHHHHHhCC---CeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeecccCC------CcccEE
Q 004354 66 SSPPPQILVPGCGNSRLSEHLYDAGF---HGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ------GGLDAL 135 (759)
Q Consensus 66 ~~~~~~ILDlGCG~G~ls~~L~~~G~---~~VtgIDiS~~~I~~a~~r~~~~~-~~i~f~~~D~~~~~------gtfD~I 135 (759)
+.++.+|||+.++.|.=+.+++...- ..|+++|+|+.=++.+++++...+ .++...+.|...++ +.||.|
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~i 233 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRI 233 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEE
Confidence 37889999999999999999988632 236999999999998888876544 45678888877654 359999
Q ss_pred EeCC----C-------------C-------hhHHHHHHHHHHHhcccCcEEEEEEcC
Q 004354 136 MEPE----L-------------G-------HKLGNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 136 i~~~----~-------------~-------~~~~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
++.. . . ......+|..+.++|||||+++..|.+
T Consensus 234 LlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS 290 (355)
T COG0144 234 LLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCS 290 (355)
T ss_pred EECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccC
Confidence 9742 0 0 112678899999999999999999876
No 412
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.00 E-value=0.0033 Score=65.64 Aligned_cols=61 Identities=28% Similarity=0.267 Sum_probs=51.7
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc-CCCCCCCeEEEEccHHH
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF-GFTQDKSLKVHITDGIK 590 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F-gl~~~~rl~v~i~Da~~ 590 (759)
..+--||.||-|+|.|+.-|.+. ..+|.+||+||.|+..-.+.+ |.+....++|+++|.+.
T Consensus 57 k~tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK 118 (315)
T KOG0820|consen 57 KPTDVVLEVGPGTGNLTVKLLEA--GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLK 118 (315)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHh--cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEeccccc
Confidence 55678999999999999988887 369999999999987766666 87777899999999554
No 413
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=97.00 E-value=0.012 Score=65.21 Aligned_cols=137 Identities=14% Similarity=0.192 Sum_probs=102.4
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCC--CcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPF--VGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATD 602 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~--~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~ 602 (759)
....+||.+-.+-|+=+..|.+.+++ ..|+++|+|+.=++..+... |+ .++.++..|+..+.....
T Consensus 155 ~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~---~nv~~~~~d~~~~~~~~~------ 225 (355)
T COG0144 155 KPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGV---RNVIVVNKDARRLAELLP------ 225 (355)
T ss_pred CCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCC---CceEEEeccccccccccc------
Confidence 44579999999999888888888875 35599999999888888775 65 338899999887755433
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcC-CCC-------------CChHHHHHHHHHccC
Q 004354 603 EMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCP-AAD-------------FVEGSFLLTVKDALS 668 (759)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scP-p~~-------------f~~~~fl~~~~~~L~ 668 (759)
...+||.|++|+-.+. .|+--- |.. =++.++|..+.+.|+
T Consensus 226 ------------------------~~~~fD~iLlDaPCSg--~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk 279 (355)
T COG0144 226 ------------------------GGEKFDRILLDAPCSG--TGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLK 279 (355)
T ss_pred ------------------------ccCcCcEEEECCCCCC--CcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 1236999999996653 232111 111 137789999999999
Q ss_pred cCcEEEEEecCCChhHHHHHHHHHHHhcCce
Q 004354 669 EQGLFIVNLVSRSQATKDMVISRMKMVFNHL 699 (759)
Q Consensus 669 ~~Gilv~N~~~~~~~~~~~v~~~l~~vF~~v 699 (759)
|||.||+-..+...+.-+.++..+.+-.+.+
T Consensus 280 ~GG~LVYSTCS~~~eENE~vV~~~L~~~~~~ 310 (355)
T COG0144 280 PGGVLVYSTCSLTPEENEEVVERFLERHPDF 310 (355)
T ss_pred CCCEEEEEccCCchhcCHHHHHHHHHhCCCc
Confidence 9999999987877777778887776666543
No 414
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=96.98 E-value=0.0058 Score=65.43 Aligned_cols=121 Identities=14% Similarity=0.088 Sum_probs=75.9
Q ss_pred cchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh--CCCeEEEEeCCHHHHHHHHHHhccCCC--CcEEEE-
Q 004354 48 AEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDRS--DMRWRV- 122 (759)
Q Consensus 48 ~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~--G~~~VtgIDiS~~~I~~a~~r~~~~~~--~i~f~~- 122 (759)
..|..+...+.+.-.....-.+.+|||+|||.|.-+..+.+. ....++++|.|+.|++.++........ ...+..
T Consensus 13 ~~YA~~~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~ 92 (274)
T PF09243_consen 13 ATYAAVYRVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRV 92 (274)
T ss_pred HHHHHHHHHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhh
Confidence 345555555555543322235679999999999877666553 355799999999999988776533211 111111
Q ss_pred --eecccCCCcccEEEeCCCC----hhHHHHHHHHHHHhcccCcEEEEEEcCchh
Q 004354 123 --MDMTSMQGGLDALMEPELG----HKLGNQYLSEVKRLLKSGGKFVCLTLAESH 171 (759)
Q Consensus 123 --~D~~~~~gtfD~Ii~~~~~----~~~~~~~l~ei~rvLkpGG~liiit~~~~~ 171 (759)
.+.... ...|+|++.... ......+++.+.+.+.+ .++++..+.+.
T Consensus 93 ~~~~~~~~-~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~ 144 (274)
T PF09243_consen 93 LYRDFLPF-PPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPA 144 (274)
T ss_pred hhcccccC-CCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChH
Confidence 111111 345999986522 23367777777776655 99999888763
No 415
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=96.96 E-value=0.0034 Score=65.10 Aligned_cols=135 Identities=9% Similarity=0.089 Sum_probs=86.3
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC------------CCCCeEEEEccHHHHHHhhc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT------------QDKSLKVHITDGIKFVREMK 596 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~------------~~~rl~v~i~Da~~~l~~~~ 596 (759)
...+|||.|+|-|--..+|..+ +..|++||++|.-++.+.+..++. ...+++++++|..++=...
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~- 119 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA- 119 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc-
Confidence 3469999999999999999987 358999999999999987644332 2357888888877651100
Q ss_pred ccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEE
Q 004354 597 SSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 676 (759)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N 676 (759)
....+||+|.- . .....+ |++ ....+.+.+.++|+|||.+++-
T Consensus 120 -----------------------------~~~~~fD~VyD-r---a~~~Al---pp~-~R~~Y~~~l~~lL~pgg~llll 162 (226)
T PRK13256 120 -----------------------------NNLPVFDIWYD-R---GAYIAL---PND-LRTNYAKMMLEVCSNNTQILLL 162 (226)
T ss_pred -----------------------------cccCCcCeeee-e---hhHhcC---CHH-HHHHHHHHHHHHhCCCcEEEEE
Confidence 01246888653 1 111222 332 3577999999999999955543
Q ss_pred ecCCCh----hHHHHHHHHHHHhcCceEEEe
Q 004354 677 LVSRSQ----ATKDMVISRMKMVFNHLFCLQ 703 (759)
Q Consensus 677 ~~~~~~----~~~~~v~~~l~~vF~~v~~~~ 703 (759)
....+. ....--...+.+.|...+.+.
T Consensus 163 ~~~~~~~~~GPPf~v~~~e~~~lf~~~~~i~ 193 (226)
T PRK13256 163 VMEHDKKSQTPPYSVTQAELIKNFSAKIKFE 193 (226)
T ss_pred EEecCCCCCCCCCcCCHHHHHHhccCCceEE
Confidence 332111 011111356777776654444
No 416
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=96.95 E-value=0.01 Score=62.08 Aligned_cols=136 Identities=15% Similarity=0.153 Sum_probs=95.2
Q ss_pred CCCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCcccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDE 603 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~ 603 (759)
.....|+.-|.|.|++..++.... |.-++...|.+..-.+-|++.| |. ++.+.+.+.|--. .
T Consensus 104 ~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi--~~~vt~~hrDVc~----~-------- 169 (314)
T KOG2915|consen 104 RPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGI--GDNVTVTHRDVCG----S-------- 169 (314)
T ss_pred CCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCC--CcceEEEEeeccc----C--------
Confidence 344689999999999998888776 6679999999999999999999 64 5678998887322 0
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChh
Q 004354 604 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQA 683 (759)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~ 683 (759)
.|+ .....+|+|++|+-++. +.+-.+.++|+.+|.-++|+ +++-+
T Consensus 170 --GF~-----------------~ks~~aDaVFLDlPaPw---------------~AiPha~~~lk~~g~r~csF-SPCIE 214 (314)
T KOG2915|consen 170 --GFL-----------------IKSLKADAVFLDLPAPW---------------EAIPHAAKILKDEGGRLCSF-SPCIE 214 (314)
T ss_pred --Ccc-----------------ccccccceEEEcCCChh---------------hhhhhhHHHhhhcCceEEec-cHHHH
Confidence 111 11367999999996653 34445556899988888887 44544
Q ss_pred HHHHHHHHHHH-hcCceEEEeecC-CccEEE
Q 004354 684 TKDMVISRMKM-VFNHLFCLQLEE-DVNLVL 712 (759)
Q Consensus 684 ~~~~v~~~l~~-vF~~v~~~~~~~-~~N~Vl 712 (759)
..+...+.|.+ -|-.+..+++-- ..|.|.
T Consensus 215 Qvqrtce~l~~~gf~~i~~vEv~~~qk~~V~ 245 (314)
T KOG2915|consen 215 QVQRTCEALRSLGFIEIETVEVLLVQKNGVK 245 (314)
T ss_pred HHHHHHHHHHhCCCceEEEEEeehhhhhcee
Confidence 44445566655 577766666433 344443
No 417
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=96.94 E-value=0.0065 Score=58.30 Aligned_cols=95 Identities=15% Similarity=0.180 Sum_probs=62.5
Q ss_pred CCCCeEEEECCCcchhHHHHHH-----hCCCeEEEEeCCHHHHHHHHHHhccCC----CCcEEEEeecccCC--CcccEE
Q 004354 67 SPPPQILVPGCGNSRLSEHLYD-----AGFHGITNVDFSKVVISDMLRRNVRDR----SDMRWRVMDMTSMQ--GGLDAL 135 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~-----~G~~~VtgIDiS~~~I~~a~~r~~~~~----~~i~f~~~D~~~~~--gtfD~I 135 (759)
.+...|+|+|||.|.++..|+. ..-.+|++||.++..++.+.++..... .++.+..+++.+.. ...+++
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDIL 103 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeEE
Confidence 4678999999999999999988 422369999999999998888764432 45667777665443 556666
Q ss_pred EeCCCChhHHHHHHHHHHHhcccCcEEEE
Q 004354 136 MEPELGHKLGNQYLSEVKRLLKSGGKFVC 164 (759)
Q Consensus 136 i~~~~~~~~~~~~l~ei~rvLkpGG~lii 164 (759)
+.-..--.....+++.+.+ ++-.+++
T Consensus 104 vgLHaCG~Ls~~~l~~~~~---~~~~~l~ 129 (141)
T PF13679_consen 104 VGLHACGDLSDRALRLFIR---PNARFLV 129 (141)
T ss_pred EEeecccchHHHHHHHHHH---cCCCEEE
Confidence 6533211223444444444 4444443
No 418
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=96.92 E-value=0.034 Score=55.91 Aligned_cols=118 Identities=19% Similarity=0.202 Sum_probs=80.5
Q ss_pred HHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHH---HHHHHHhhcCCCCCCCeE
Q 004354 506 YHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLT---MLNLAEDYFGFTQDKSLK 582 (759)
Q Consensus 506 Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~---v~~vA~~~Fgl~~~~rl~ 582 (759)
+.+-++-++.++.. +. ....+++.||.|+|.=...|.=.+|+.+++.||-... .++.+.+.+|+ ++++
T Consensus 31 ~~~Hi~DSL~~~~~-~~-----~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L---~nv~ 101 (184)
T PF02527_consen 31 WERHILDSLALLPF-LP-----DFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGL---SNVE 101 (184)
T ss_dssp HHHHHHHHHGGGGC-S------CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT----SSEE
T ss_pred HHHHHHHHHHhhhh-hc-----cCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCC---CCEE
Confidence 44556666655442 21 2222899999999955555666679999999999885 45556667788 3699
Q ss_pred EEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHH
Q 004354 583 VHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLT 662 (759)
Q Consensus 583 v~i~Da~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~ 662 (759)
++.+++.+ ... ..+||+|+.=+.++- ..+++.
T Consensus 102 v~~~R~E~--~~~--------------------------------~~~fd~v~aRAv~~l--------------~~l~~~ 133 (184)
T PF02527_consen 102 VINGRAEE--PEY--------------------------------RESFDVVTARAVAPL--------------DKLLEL 133 (184)
T ss_dssp EEES-HHH--TTT--------------------------------TT-EEEEEEESSSSH--------------HHHHHH
T ss_pred EEEeeecc--ccc--------------------------------CCCccEEEeehhcCH--------------HHHHHH
Confidence 99999887 111 378999999665531 678999
Q ss_pred HHHccCcCcEEEEEecCC
Q 004354 663 VKDALSEQGLFIVNLVSR 680 (759)
Q Consensus 663 ~~~~L~~~Gilv~N~~~~ 680 (759)
+...|+++|.+++---..
T Consensus 134 ~~~~l~~~G~~l~~KG~~ 151 (184)
T PF02527_consen 134 ARPLLKPGGRLLAYKGPD 151 (184)
T ss_dssp HGGGEEEEEEEEEEESS-
T ss_pred HHHhcCCCCEEEEEcCCC
Confidence 999999999988665433
No 419
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=96.90 E-value=0.0056 Score=62.85 Aligned_cols=96 Identities=17% Similarity=0.089 Sum_probs=72.4
Q ss_pred CCeEEEECCCcchhHHHHHHh--CCCeEEEEeCCHHHHHHHHHHhcc-CCCCcEEEEeecccCC--Cc-ccEEEeCCCCh
Q 004354 69 PPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVR-DRSDMRWRVMDMTSMQ--GG-LDALMEPELGH 142 (759)
Q Consensus 69 ~~~ILDlGCG~G~ls~~L~~~--G~~~VtgIDiS~~~I~~a~~r~~~-~~~~i~f~~~D~~~~~--gt-fD~Ii~~~~~~ 142 (759)
..+++|||.|.|.-+..|+=. .. +||-+|....=+...+.-... .-++++++++.+++.. .. ||+|++-...
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~-~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva- 145 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDL-KVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVA- 145 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCC-cEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehcc-
Confidence 579999999999999887632 33 499999887666555444332 4467999999999887 34 9999996532
Q ss_pred hHHHHHHHHHHHhcccCcEEEEEEc
Q 004354 143 KLGNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 143 ~~~~~~l~ei~rvLkpGG~liiit~ 167 (759)
....+++-+..++++||.++..-+
T Consensus 146 -~L~~l~e~~~pllk~~g~~~~~k~ 169 (215)
T COG0357 146 -SLNVLLELCLPLLKVGGGFLAYKG 169 (215)
T ss_pred -chHHHHHHHHHhcccCCcchhhhH
Confidence 257788889999999998765543
No 420
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=96.90 E-value=0.0021 Score=65.39 Aligned_cols=99 Identities=16% Similarity=0.222 Sum_probs=69.6
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC-CCCCeEEEEccHHHHHHhhcccCccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSV 606 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~-~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~ 606 (759)
.....|+.+-.|.|..+..+..+.+...|.++|++|..++..++...+. -..++.++.+|+.+++..
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~------------ 167 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPE------------ 167 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---T------------
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCc------------
Confidence 3457899999999977777777656678999999999999999887221 257899999999999762
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEE
Q 004354 607 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFI 674 (759)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv 674 (759)
..+|-||++.... +.+||..+..+++++|++-
T Consensus 168 ----------------------~~~drvim~lp~~--------------~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 168 ----------------------GKFDRVIMNLPES--------------SLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp ----------------------T-EEEEEE--TSS--------------GGGGHHHHHHHEEEEEEEE
T ss_pred ----------------------cccCEEEECChHH--------------HHHHHHHHHHHhcCCcEEE
Confidence 5699999954221 2479999999999999863
No 421
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=96.89 E-value=0.0022 Score=68.07 Aligned_cols=59 Identities=22% Similarity=0.198 Sum_probs=51.4
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHH
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF 591 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~ 591 (759)
...+||.||.|.|.++..|.... .++++||+|+.+++.+++.+.- .++++++.+|+.++
T Consensus 29 ~~~~VLEIG~G~G~lt~~L~~~~--~~v~~vEid~~~~~~l~~~~~~--~~~v~ii~~D~~~~ 87 (258)
T PRK14896 29 DGDPVLEIGPGKGALTDELAKRA--KKVYAIELDPRLAEFLRDDEIA--AGNVEIIEGDALKV 87 (258)
T ss_pred CcCeEEEEeCccCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHhcc--CCCEEEEEeccccC
Confidence 44789999999999999999883 4899999999999999998853 46899999998764
No 422
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=96.84 E-value=0.0022 Score=63.33 Aligned_cols=59 Identities=22% Similarity=0.294 Sum_probs=54.0
Q ss_pred CeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHH
Q 004354 531 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF 591 (759)
Q Consensus 531 ~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~ 591 (759)
..+..+|.|.|.|+++..+. .-+|.+||.||...+.|++...++.+.++.|+.+||+.|
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y 92 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDY 92 (252)
T ss_pred hceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccc
Confidence 46889999999999998887 349999999999999999999888889999999999998
No 423
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=96.83 E-value=0.004 Score=67.18 Aligned_cols=99 Identities=16% Similarity=0.113 Sum_probs=78.6
Q ss_pred CCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHh--c------cCCCCcEEEEeecccCC----CcccE
Q 004354 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRN--V------RDRSDMRWRVMDMTSMQ----GGLDA 134 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~--~------~~~~~i~f~~~D~~~~~----gtfD~ 134 (759)
...++|.+|.|.|.-.+++.+. ++.+|+-+|.+|.||+.+++.. . -..|+++.+..|+.++- ..||+
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~ 368 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDV 368 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccE
Confidence 4568999999999999999987 4788999999999999887321 1 12478999999988876 78999
Q ss_pred EEeCCCCh---hH----HHHHHHHHHHhcccCcEEEEEE
Q 004354 135 LMEPELGH---KL----GNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 135 Ii~~~~~~---~~----~~~~l~ei~rvLkpGG~liiit 166 (759)
|+..-..+ .. -..+...+.|.|+++|.+++..
T Consensus 369 vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQa 407 (508)
T COG4262 369 VIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQA 407 (508)
T ss_pred EEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEec
Confidence 99853211 11 5677888899999999988765
No 424
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=96.83 E-value=0.0029 Score=66.83 Aligned_cols=59 Identities=22% Similarity=0.294 Sum_probs=52.0
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHH
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF 591 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~ 591 (759)
...+||.||.|.|.++..|.+..+ .+++||+|+.+++.+++.++. .++++++.+|+.++
T Consensus 29 ~~~~VLEiG~G~G~lt~~L~~~~~--~v~~iE~d~~~~~~l~~~~~~--~~~v~v~~~D~~~~ 87 (253)
T TIGR00755 29 EGDVVLEIGPGLGALTEPLLKRAK--KVTAIEIDPRLAEILRKLLSL--YERLEVIEGDALKV 87 (253)
T ss_pred CcCEEEEeCCCCCHHHHHHHHhCC--cEEEEECCHHHHHHHHHHhCc--CCcEEEEECchhcC
Confidence 457899999999999999998864 599999999999999998864 57899999998764
No 425
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=96.82 E-value=0.0051 Score=63.56 Aligned_cols=134 Identities=14% Similarity=0.178 Sum_probs=84.1
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC------------CCCCCeEEEEccHHHHHHhh
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF------------TQDKSLKVHITDGIKFVREM 595 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl------------~~~~rl~v~i~Da~~~l~~~ 595 (759)
....+|||.|+|-|.-..+|..+ +.+|++||+.+.-++.|.+.-++ ....+++++.+|..++=..
T Consensus 36 ~~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~- 112 (218)
T PF05724_consen 36 KPGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE- 112 (218)
T ss_dssp STSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS-
T ss_pred CCCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh-
Confidence 34569999999999999999987 35999999999999998544332 1346789999997764211
Q ss_pred cccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcE-EE
Q 004354 596 KSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGL-FI 674 (759)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gi-lv 674 (759)
..++||+|.= -.....+ |+. ....+.+.++++|+|+|. |.
T Consensus 113 -------------------------------~~g~fD~iyD----r~~l~Al---pp~-~R~~Ya~~l~~ll~p~g~~lL 153 (218)
T PF05724_consen 113 -------------------------------DVGKFDLIYD----RTFLCAL---PPE-MRERYAQQLASLLKPGGRGLL 153 (218)
T ss_dssp -------------------------------CHHSEEEEEE----CSSTTTS----GG-GHHHHHHHHHHCEEEEEEEEE
T ss_pred -------------------------------hcCCceEEEE----ecccccC---CHH-HHHHHHHHHHHHhCCCCcEEE
Confidence 1247999863 1111222 333 567899999999999997 33
Q ss_pred EEecCC----ChhHHHHHHHHHHHhcCceEEEe
Q 004354 675 VNLVSR----SQATKDMVISRMKMVFNHLFCLQ 703 (759)
Q Consensus 675 ~N~~~~----~~~~~~~v~~~l~~vF~~v~~~~ 703 (759)
+-+.-. ......--.+.+.+.|..-+.+.
T Consensus 154 i~l~~~~~~~~GPPf~v~~~ev~~l~~~~f~i~ 186 (218)
T PF05724_consen 154 ITLEYPQGEMEGPPFSVTEEEVRELFGPGFEIE 186 (218)
T ss_dssp EEEES-CSCSSSSS----HHHHHHHHTTTEEEE
T ss_pred EEEEcCCcCCCCcCCCCCHHHHHHHhcCCcEEE
Confidence 333211 11111112355666666544443
No 426
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=96.81 E-value=0.011 Score=59.35 Aligned_cols=95 Identities=16% Similarity=0.099 Sum_probs=72.2
Q ss_pred eEEEECCCcchhHHHHHHhCC-CeEEEEeCCHHHHHHHHHHhcc-CCCCcEEEEeeccc--CCCcccEEEeCCCChhHHH
Q 004354 71 QILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVR-DRSDMRWRVMDMTS--MQGGLDALMEPELGHKLGN 146 (759)
Q Consensus 71 ~ILDlGCG~G~ls~~L~~~G~-~~VtgIDiS~~~I~~a~~r~~~-~~~~i~f~~~D~~~--~~gtfD~Ii~~~~~~~~~~ 146 (759)
+++|+|+|.|.-+..|+=.-. .+++.+|.+..=+...+.-... .-.++++++..+++ ....||+|++-.... ..
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aRAv~~--l~ 128 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTARAVAP--LD 128 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEESSSS--HH
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEeehhcC--HH
Confidence 899999999999988865422 3699999998766655544332 34579999999998 338999999966442 56
Q ss_pred HHHHHHHHhcccCcEEEEEEc
Q 004354 147 QYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 147 ~~l~ei~rvLkpGG~liiit~ 167 (759)
.+++-+...+++||++++.--
T Consensus 129 ~l~~~~~~~l~~~G~~l~~KG 149 (184)
T PF02527_consen 129 KLLELARPLLKPGGRLLAYKG 149 (184)
T ss_dssp HHHHHHGGGEEEEEEEEEEES
T ss_pred HHHHHHHHhcCCCCEEEEEcC
Confidence 888999999999999988863
No 427
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=96.80 E-value=0.0045 Score=67.14 Aligned_cols=96 Identities=18% Similarity=0.161 Sum_probs=78.6
Q ss_pred CCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCCCcccEEEeCCCCh----hH
Q 004354 69 PPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQGGLDALMEPELGH----KL 144 (759)
Q Consensus 69 ~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~gtfD~Ii~~~~~~----~~ 144 (759)
-...+|+|.|.|+.+..+.. -|.+|-++++....+..++..+. +.++.+-+|+.+-...-|+|++....| ..
T Consensus 178 v~~avDvGgGiG~v~k~ll~-~fp~ik~infdlp~v~~~a~~~~---~gV~~v~gdmfq~~P~~daI~mkWiLhdwtDed 253 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLS-KYPHIKGINFDLPFVLAAAPYLA---PGVEHVAGDMFQDTPKGDAIWMKWILHDWTDED 253 (342)
T ss_pred CceEEEcCCcHhHHHHHHHH-hCCCCceeecCHHHHHhhhhhhc---CCcceecccccccCCCcCeEEEEeecccCChHH
Confidence 46899999999999999998 57779999999888876665542 558999999877666678999855332 34
Q ss_pred HHHHHHHHHHhcccCcEEEEEEcC
Q 004354 145 GNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 145 ~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
..++|++++..|+|||.+++...-
T Consensus 254 cvkiLknC~~sL~~~GkIiv~E~V 277 (342)
T KOG3178|consen 254 CVKILKNCKKSLPPGGKIIVVENV 277 (342)
T ss_pred HHHHHHHHHHhCCCCCEEEEEecc
Confidence 889999999999999999999763
No 428
>KOG2730 consensus Methylase [General function prediction only]
Probab=96.77 E-value=0.003 Score=63.96 Aligned_cols=71 Identities=13% Similarity=0.081 Sum_probs=55.6
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccCC-------CcccEEEeC
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ-------GGLDALMEP 138 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~~-------gtfD~Ii~~ 138 (759)
....|+|.-||.|..+..++..|.. |++||++|.-|..|+.+++--+ .+++|+++|+.++- ..+|+|+..
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~~-VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~s 172 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGPY-VIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLS 172 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCCe-EEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecC
Confidence 3468999999999999999988775 9999999999987777664322 37999999998875 345577654
Q ss_pred C
Q 004354 139 E 139 (759)
Q Consensus 139 ~ 139 (759)
.
T Consensus 173 p 173 (263)
T KOG2730|consen 173 P 173 (263)
T ss_pred C
Confidence 3
No 429
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=96.61 E-value=0.005 Score=60.52 Aligned_cols=61 Identities=15% Similarity=0.184 Sum_probs=46.8
Q ss_pred eEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhc
Q 004354 532 KAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMK 596 (759)
Q Consensus 532 ~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~ 596 (759)
.|+.+-.|+|+.+..+...+ .+|.+||+||.-++.|+... |. .+++.++.+|..+++++..
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~--~~Viaidid~~~~~~a~hNa~vYGv--~~~I~~i~gD~~~~~~~~~ 65 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF--DRVIAIDIDPERLECAKHNAEVYGV--ADNIDFICGDFFELLKRLK 65 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT---GGGEEEEES-HHHHGGGB-
T ss_pred EEEEeccCcCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEeCCHHHHHhhcc
Confidence 47788888888877777764 58999999999999999886 64 6799999999999887754
No 430
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=96.53 E-value=0.0065 Score=61.72 Aligned_cols=45 Identities=27% Similarity=0.363 Sum_probs=34.7
Q ss_pred CCCCeEEEEccccc----HHHHHHHHhCC-----CCcEEEEEcCHHHHHHHHhh
Q 004354 528 GKSVKAVVIGLGAG----LLPMFLHECMP-----FVGIEAVELDLTMLNLAEDY 572 (759)
Q Consensus 528 ~~~~~vLviGlG~G----~l~~~L~~~~p-----~~~i~~VEiDp~v~~vA~~~ 572 (759)
+.+.+|...|+++| +|+|.|.+..+ ..+|.+.|||+.+++.|++-
T Consensus 30 ~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G 83 (196)
T PF01739_consen 30 GRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAG 83 (196)
T ss_dssp -S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHT
T ss_pred CCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhC
Confidence 46789999999999 88888888432 35999999999999999764
No 431
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=96.52 E-value=0.015 Score=59.17 Aligned_cols=135 Identities=20% Similarity=0.167 Sum_probs=90.8
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
+.+.=+|.||+|+|.....|... ......|||+|.|+++|.+ +.-+ -.++.+|--+=+
T Consensus 49 ~~~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~~a~~--~e~e---gdlil~DMG~Gl--------------- 106 (270)
T KOG1541|consen 49 PKSGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLEQAVE--RELE---GDLILCDMGEGL--------------- 106 (270)
T ss_pred CCCcEEEEeccCCCcchheeccC--CceEEeecCCHHHHHHHHH--hhhh---cCeeeeecCCCC---------------
Confidence 34667999999999888888765 3589999999999999986 2212 234444411110
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEE-c----CCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCCh
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILII-D----VDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQ 682 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~-D----~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~ 682 (759)
+.....||.+|. - +++.|.+... |... -..|+..+..+|+.++-.|+.+.+.+.
T Consensus 107 -----------------pfrpGtFDg~ISISAvQWLcnA~~s~~~--P~~R--l~~FF~tLy~~l~rg~raV~QfYpen~ 165 (270)
T KOG1541|consen 107 -----------------PFRPGTFDGVISISAVQWLCNADKSLHV--PKKR--LLRFFGTLYSCLKRGARAVLQFYPENE 165 (270)
T ss_pred -----------------CCCCCccceEEEeeeeeeecccCccccC--hHHH--HHHHhhhhhhhhccCceeEEEecccch
Confidence 112467887773 1 1233332211 2222 356999999999999999999999988
Q ss_pred hHHHHHH-HHHHHhcCceEEEeec
Q 004354 683 ATKDMVI-SRMKMVFNHLFCLQLE 705 (759)
Q Consensus 683 ~~~~~v~-~~l~~vF~~v~~~~~~ 705 (759)
...+++. +.+++=|.--..++.+
T Consensus 166 ~q~d~i~~~a~~aGF~GGlvVd~P 189 (270)
T KOG1541|consen 166 AQIDMIMQQAMKAGFGGGLVVDWP 189 (270)
T ss_pred HHHHHHHHHHHhhccCCceeeecc
Confidence 8888877 5577778865454443
No 432
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=96.46 E-value=0.0042 Score=66.01 Aligned_cols=59 Identities=24% Similarity=0.277 Sum_probs=53.1
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHH
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF 591 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~ 591 (759)
....|+.||-|.|.++..|.+.. .++++||+|+...+.-++.|. .+++++++.+|+.++
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~--~~~~~~vi~~D~l~~ 88 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFA--SNPNVEVINGDFLKW 88 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCT--TCSSEEEEES-TTTS
T ss_pred CCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhh--hcccceeeecchhcc
Confidence 45789999999999999999886 699999999999999999987 578999999999886
No 433
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.45 E-value=0.074 Score=54.35 Aligned_cols=145 Identities=14% Similarity=0.140 Sum_probs=107.0
Q ss_pred HHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCC-CeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccCC---C
Q 004354 57 LISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ---G 130 (759)
Q Consensus 57 l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~-~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~~---g 130 (759)
+..+++ .+.++.|+||--+.+..+|.+.+. ..+++.|+++..++.|.+...+.. +.++..++|....- .
T Consensus 10 va~~V~-----~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d 84 (226)
T COG2384 10 VANLVK-----QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELED 84 (226)
T ss_pred HHHHHH-----cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccC
Confidence 445554 345599999999999999998864 569999999999999988775433 45677777764332 4
Q ss_pred cccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEEcCchhhhhhhccccCCCceEEEEEeCCCCCCCCCceEEEEEEEe
Q 004354 131 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVADK 210 (759)
Q Consensus 131 tfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit~~~~~~~~~l~~~~~~~w~v~~~~~~~~~~~~~~~~~f~~v~~K 210 (759)
.+|+++....+-..+..++++-.+.|+.=-+|++-.-.++..++.++... +|.+..+.+..+ ....|=+.++.+
T Consensus 85 ~~d~ivIAGMGG~lI~~ILee~~~~l~~~~rlILQPn~~~~~LR~~L~~~--~~~I~~E~ileE----~~kiYEIlv~e~ 158 (226)
T COG2384 85 EIDVIVIAGMGGTLIREILEEGKEKLKGVERLILQPNIHTYELREWLSAN--SYEIKAETILEE----DGKIYEILVVEK 158 (226)
T ss_pred CcCEEEEeCCcHHHHHHHHHHhhhhhcCcceEEECCCCCHHHHHHHHHhC--Cceeeeeeeecc----cCeEEEEEEEec
Confidence 79999988877777888999988888755567766655555566665433 899999888774 245566667777
Q ss_pred CC
Q 004354 211 EN 212 (759)
Q Consensus 211 ~~ 212 (759)
..
T Consensus 159 ~~ 160 (226)
T COG2384 159 SS 160 (226)
T ss_pred CC
Confidence 54
No 434
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=96.35 E-value=0.01 Score=56.49 Aligned_cols=64 Identities=8% Similarity=-0.020 Sum_probs=50.4
Q ss_pred eEEEECCCcchhHHHHHHhCCC-eEEEEeCCHHHHHHHHHHhccC-CCCcEEEEeecccCCCcccE
Q 004354 71 QILVPGCGNSRLSEHLYDAGFH-GITNVDFSKVVISDMLRRNVRD-RSDMRWRVMDMTSMQGGLDA 134 (759)
Q Consensus 71 ~ILDlGCG~G~ls~~L~~~G~~-~VtgIDiS~~~I~~a~~r~~~~-~~~i~f~~~D~~~~~gtfD~ 134 (759)
.+||+|||.|..+..++..+.. +++++|.++.+++.++++.... .+++.+....+.+-.++..+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~~~g~~~~ 66 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGDRDGELEF 66 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeCCCCeEEE
Confidence 4899999999999999888654 7999999999999988876543 35688888877665544433
No 435
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=96.34 E-value=0.017 Score=63.03 Aligned_cols=84 Identities=17% Similarity=0.148 Sum_probs=61.3
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC---CcccEEEeCCCChh
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ---GGLDALMEPELGHK 143 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~---gtfD~Ii~~~~~~~ 143 (759)
.++.++|||||++|..+..|.+.|. .|++||..+ |...+ ...+++.....|..... +.+|.++|.....
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~-----l~~~L-~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmve~- 281 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGP-----MAQSL-MDTGQVEHLRADGFKFRPPRKNVDWLVCDMVEK- 281 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechh-----cCHhh-hCCCCEEEEeccCcccCCCCCCCCEEEEecccC-
Confidence 4788999999999999999999998 599999666 22222 23467888888875544 6799999976432
Q ss_pred HHHHHHHHHHHhcccC
Q 004354 144 LGNQYLSEVKRLLKSG 159 (759)
Q Consensus 144 ~~~~~l~ei~rvLkpG 159 (759)
+.+..+-+.+.|..|
T Consensus 282 -P~rva~lm~~Wl~~g 296 (357)
T PRK11760 282 -PARVAELMAQWLVNG 296 (357)
T ss_pred -HHHHHHHHHHHHhcC
Confidence 445555555555443
No 436
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=96.33 E-value=0.036 Score=56.13 Aligned_cols=100 Identities=15% Similarity=0.127 Sum_probs=76.8
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccC----C-CcccEEEeCCC-
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM----Q-GGLDALMEPEL- 140 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~----~-gtfD~Ii~~~~- 140 (759)
.++.+||+||-|-|...-.+.+.....-+-|+..|.++++|+...-....++..+.+-..+. + +.||-|+-...
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy~ 179 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTYS 179 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeechh
Confidence 36889999999999999988887665678899999999999887644445666665533322 2 77999998653
Q ss_pred -ChhHHHHHHHHHHHhcccCcEEEEEE
Q 004354 141 -GHKLGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 141 -~~~~~~~~l~ei~rvLkpGG~liiit 166 (759)
..+....+.+.+.|+|||+|+|-+.-
T Consensus 180 e~yEdl~~~hqh~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 180 ELYEDLRHFHQHVVRLLKPEGVFSYFN 206 (271)
T ss_pred hHHHHHHHHHHHHhhhcCCCceEEEec
Confidence 22347888899999999999986553
No 437
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=96.33 E-value=0.02 Score=58.49 Aligned_cols=84 Identities=14% Similarity=0.173 Sum_probs=61.1
Q ss_pred CCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC------CcccEEEeCC---
Q 004354 69 PPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ------GGLDALMEPE--- 139 (759)
Q Consensus 69 ~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~------gtfD~Ii~~~--- 139 (759)
..++|||||=+......- .++-+|+.||+.+. .-.+.+.|+.+.+ +.||+|.++-
T Consensus 52 ~lrlLEVGals~~N~~s~--~~~fdvt~IDLns~--------------~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLN 115 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACST--SGWFDVTRIDLNSQ--------------HPGILQQDFMERPLPKNESEKFDVISLSLVLN 115 (219)
T ss_pred cceEEeecccCCCCcccc--cCceeeEEeecCCC--------------CCCceeeccccCCCCCCcccceeEEEEEEEEe
Confidence 479999999877655432 34435999999871 1134666766654 7899999853
Q ss_pred -C-ChhHHHHHHHHHHHhcccCcE-----EEEEEcC
Q 004354 140 -L-GHKLGNQYLSEVKRLLKSGGK-----FVCLTLA 168 (759)
Q Consensus 140 -~-~~~~~~~~l~ei~rvLkpGG~-----liiit~~ 168 (759)
. .+..+-.|+..+++.|+|+|. ++++...
T Consensus 116 fVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~ 151 (219)
T PF11968_consen 116 FVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPL 151 (219)
T ss_pred eCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCc
Confidence 2 244589999999999999999 8877643
No 438
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=96.25 E-value=0.016 Score=65.59 Aligned_cols=73 Identities=16% Similarity=0.222 Sum_probs=56.2
Q ss_pred hHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccC-CCCcEEEEeecccCC
Q 004354 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD-RSDMRWRVMDMTSMQ 129 (759)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~-~~~i~f~~~D~~~~~ 129 (759)
+...+.+++.. +.+..+||+-||||.++..+++ +...|+||++++.+++.|+.++..+ ..+.+|+++-+++.-
T Consensus 371 Lys~i~e~~~l---~~~k~llDv~CGTG~iglala~-~~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~~ 444 (534)
T KOG2187|consen 371 LYSTIGEWAGL---PADKTLLDVCCGTGTIGLALAR-GVKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDLF 444 (534)
T ss_pred HHHHHHHHhCC---CCCcEEEEEeecCCceehhhhc-cccceeeeecChhhcchhhhcchhcCccceeeeecchhhcc
Confidence 33344445443 5678899999999999998875 4778999999999999998877543 468999999555543
No 439
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=96.22 E-value=0.0098 Score=58.84 Aligned_cols=95 Identities=12% Similarity=0.032 Sum_probs=73.0
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhc-cCCCCcEEEEeecccCC-CcccEEEeCCCCh---
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNV-RDRSDMRWRVMDMTSMQ-GGLDALMEPELGH--- 142 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~-~~~~~i~f~~~D~~~~~-gtfD~Ii~~~~~~--- 142 (759)
..+.+.|+|+|+|.++.-.+.. .++|++|+.+|.-.+.+.+++. ....+++.+.+|+.+.. ...|+|+|-....
T Consensus 32 a~d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe~ADvvicEmlDTaLi 110 (252)
T COG4076 32 AEDTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFENADVVICEMLDTALI 110 (252)
T ss_pred hhhceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccccccceeHHHHhhHHhh
Confidence 3478999999999999877665 6679999999988888877752 34467899999999887 7789999954221
Q ss_pred -hHHHHHHHHHHHhcccCcEEE
Q 004354 143 -KLGNQYLSEVKRLLKSGGKFV 163 (759)
Q Consensus 143 -~~~~~~l~ei~rvLkpGG~li 163 (759)
+.....++.+...|+.++.++
T Consensus 111 ~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 111 EEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred cccccHHHHHHHHHhhcCCccc
Confidence 124556677777888888776
No 440
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=96.14 E-value=0.005 Score=55.70 Aligned_cols=91 Identities=16% Similarity=0.033 Sum_probs=42.6
Q ss_pred EEECCCcchhHHHHHHh----CCCeEEEEeCCHH---HHHHHHHHhccCCCCcEEEEeecccCC-----CcccEEEeCCC
Q 004354 73 LVPGCGNSRLSEHLYDA----GFHGITNVDFSKV---VISDMLRRNVRDRSDMRWRVMDMTSMQ-----GGLDALMEPEL 140 (759)
Q Consensus 73 LDlGCG~G~ls~~L~~~----G~~~VtgIDiS~~---~I~~a~~r~~~~~~~i~f~~~D~~~~~-----gtfD~Ii~~~~ 140 (759)
||+|+..|..+..+++. +..+++++|..+. +-+.+++ .....+++++.+|..+.- +++|+++....
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~--~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~ 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKK--AGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD 78 (106)
T ss_dssp --------------------------EEEESS--------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES-
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhh--cCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC
Confidence 68999999988877653 2225999999994 3332222 112346899999886543 79999999764
Q ss_pred C-hhHHHHHHHHHHHhcccCcEEEEE
Q 004354 141 G-HKLGNQYLSEVKRLLKSGGKFVCL 165 (759)
Q Consensus 141 ~-~~~~~~~l~ei~rvLkpGG~liii 165 (759)
. .......++.+.+.|+|||.+++=
T Consensus 79 H~~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 79 HSYEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp --HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 2 234788899999999999988864
No 441
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=96.12 E-value=0.026 Score=60.74 Aligned_cols=102 Identities=20% Similarity=0.204 Sum_probs=80.4
Q ss_pred CCCCeEEEECCCcchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeecccCC----C-cccEEEeC
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAG--FHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ----G-GLDALMEP 138 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G--~~~VtgIDiS~~~I~~a~~r~~~~~-~~i~f~~~D~~~~~----g-tfD~Ii~~ 138 (759)
.++..|||+.+|.|.=+.++++.- -..|++.|+++.-+..++.+..+.+ .++...+.|.+... + .||.|+..
T Consensus 84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~VlvD 163 (283)
T PF01189_consen 84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLVD 163 (283)
T ss_dssp TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEEE
T ss_pred cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhcC
Confidence 678899999999999999998862 2469999999999998888775543 46777778887763 4 59999973
Q ss_pred C----C--------------C------hhHHHHHHHHHHHhc----ccCcEEEEEEcC
Q 004354 139 E----L--------------G------HKLGNQYLSEVKRLL----KSGGKFVCLTLA 168 (759)
Q Consensus 139 ~----~--------------~------~~~~~~~l~ei~rvL----kpGG~liiit~~ 168 (759)
. . . .....++|+.+.+.+ ||||+++..|.+
T Consensus 164 aPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS 221 (283)
T PF01189_consen 164 APCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCS 221 (283)
T ss_dssp CSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESH
T ss_pred CCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEecc
Confidence 2 0 0 011678899999999 999999999975
No 442
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=96.08 E-value=0.032 Score=59.52 Aligned_cols=97 Identities=24% Similarity=0.326 Sum_probs=63.9
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHh---ccCC---------------------------CC
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRN---VRDR---------------------------SD 117 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~---~~~~---------------------------~~ 117 (759)
.+.+||..|||.|+++..|+..|+. +-|-++|--|+= +..-. .+.. |.
T Consensus 150 ~ki~iLvPGaGlGRLa~dla~~G~~-~qGNEfSy~Mli-~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD 227 (369)
T KOG2798|consen 150 TKIRILVPGAGLGRLAYDLACLGFK-CQGNEFSYFMLI-CSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPD 227 (369)
T ss_pred cCceEEecCCCchhHHHHHHHhccc-ccccHHHHHHHH-HHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcc
Confidence 4678999999999999999999996 777788876652 11100 0000 11
Q ss_pred ------------cEEEEeecccCC------CcccEEEeCC--CChhHHHHHHHHHHHhcccCcEEEEEE
Q 004354 118 ------------MRWRVMDMTSMQ------GGLDALMEPE--LGHKLGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 118 ------------i~f~~~D~~~~~------gtfD~Ii~~~--~~~~~~~~~l~ei~rvLkpGG~liiit 166 (759)
+..-.+|+.+.- +.||+|+... ...+.+-.+++.|..+|+|||+++=+.
T Consensus 228 ~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWiNlG 296 (369)
T KOG2798|consen 228 IHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWINLG 296 (369)
T ss_pred ccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccCCcEEEecc
Confidence 111123333322 5799988643 223347899999999999999988664
No 443
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=96.04 E-value=0.025 Score=56.78 Aligned_cols=100 Identities=18% Similarity=0.124 Sum_probs=68.9
Q ss_pred CCCeEEEECCCcchhHHHHHHhCC-CeEEEEeCCHHHHHHHHHHhccC--------CCCcEEEEeecccCC------Ccc
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRD--------RSDMRWRVMDMTSMQ------GGL 132 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~-~~VtgIDiS~~~I~~a~~r~~~~--------~~~i~f~~~D~~~~~------gtf 132 (759)
....+.|||||-|.+...|+..-. .-+.|.+|--.+-+..++|+.+. .+++.....+....- |.+
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqL 139 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQL 139 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccc
Confidence 456899999999999999987733 35899998888887777776332 245666666554432 443
Q ss_pred cEE-EeCCCChh---------HHHHHHHHHHHhcccCcEEEEEEc
Q 004354 133 DAL-MEPELGHK---------LGNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 133 D~I-i~~~~~~~---------~~~~~l~ei~rvLkpGG~liiit~ 167 (759)
+-. ++....|- .-..++.+..-+|++||.++.++-
T Consensus 140 skmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitD 184 (249)
T KOG3115|consen 140 SKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITD 184 (249)
T ss_pred ccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEee
Confidence 332 33332221 156788999999999999998874
No 444
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=96.00 E-value=0.0089 Score=64.24 Aligned_cols=44 Identities=16% Similarity=0.148 Sum_probs=38.0
Q ss_pred CCCeEEEEccccc----HHHHHHHHhCC----CCcEEEEEcCHHHHHHHHhh
Q 004354 529 KSVKAVVIGLGAG----LLPMFLHECMP----FVGIEAVELDLTMLNLAEDY 572 (759)
Q Consensus 529 ~~~~vLviGlG~G----~l~~~L~~~~p----~~~i~~VEiDp~v~~vA~~~ 572 (759)
.+.+|...|+.+| +++|.|.+.++ ..+|.+.|||+.+++.|++-
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G 166 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSG 166 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhC
Confidence 4589999999999 88899988753 35899999999999999865
No 445
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=95.98 E-value=0.063 Score=57.32 Aligned_cols=70 Identities=9% Similarity=0.012 Sum_probs=54.4
Q ss_pred HhhcCCCCCCCCeEEEECCCcchhHHHHHHhCC--CeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccC
Q 004354 59 SLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF--HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM 128 (759)
Q Consensus 59 ~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~--~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~ 128 (759)
+.+..+.+.+++..+|.=-|.|..+..+++.+. .+++|+|-++.+|+.|+++......++.+++..+.++
T Consensus 14 E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~l 85 (314)
T COG0275 14 EVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFANL 85 (314)
T ss_pred HHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHHH
Confidence 333333347889999999999999999998853 4699999999999999998866556677776655444
No 446
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=95.96 E-value=0.034 Score=59.57 Aligned_cols=99 Identities=21% Similarity=0.288 Sum_probs=69.6
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcC-CCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG-FTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg-l~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
..+-||.+|.|.|.|.+|....- ..+|-+||. .+|.+.|++-.. -.-.+|+.|+-|.-.+. ++
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAG-A~~vYAvEA-S~MAqyA~~Lv~~N~~~~rItVI~GKiEdi--eL------------ 240 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAG-AKKVYAVEA-SEMAQYARKLVASNNLADRITVIPGKIEDI--EL------------ 240 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhC-cceEEEEeh-hHHHHHHHHHHhcCCccceEEEccCccccc--cC------------
Confidence 34678999999999999999883 459999998 578888888761 12357899988753332 11
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHH---HHHHHccCcCcEEE
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFL---LTVKDALSEQGLFI 674 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl---~~~~~~L~~~Gilv 674 (759)
.++.|+||. ++.+.| ++.+..| -.+++-|+|+|...
T Consensus 241 --------------------PEk~DviIS-----EPMG~m------L~NERMLEsYl~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 241 --------------------PEKVDVIIS-----EPMGYM------LVNERMLESYLHARKWLKPNGKMF 279 (517)
T ss_pred --------------------chhccEEEe-----ccchhh------hhhHHHHHHHHHHHhhcCCCCccc
Confidence 368999997 333222 3444444 45678999999655
No 447
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.96 E-value=0.032 Score=57.58 Aligned_cols=95 Identities=18% Similarity=0.153 Sum_probs=70.4
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCC-cEEEEeecccCC-----CcccEEEeCCC
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSD-MRWRVMDMTSMQ-----GGLDALMEPEL 140 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~-i~f~~~D~~~~~-----gtfD~Ii~~~~ 140 (759)
.++..+||+|.-||.++..+++.|.+.|+++|..-..+..-.+ ..++ +.+...|+..+. +..|+++|.-.
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR----~d~rV~~~E~tN~r~l~~~~~~~~~d~~v~DvS 153 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLR----NDPRVIVLERTNVRYLTPEDFTEKPDLIVIDVS 153 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHh----cCCcEEEEecCChhhCCHHHcccCCCeEEEEee
Confidence 4678999999999999999999999999999998866543221 1233 334445555554 56788888543
Q ss_pred ChhHHHHHHHHHHHhcccCcEEEEEE
Q 004354 141 GHKLGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 141 ~~~~~~~~l~ei~rvLkpGG~liiit 166 (759)
. -.....|-.+..+++++|.++...
T Consensus 154 F-ISL~~iLp~l~~l~~~~~~~v~Lv 178 (245)
T COG1189 154 F-ISLKLILPALLLLLKDGGDLVLLV 178 (245)
T ss_pred h-hhHHHHHHHHHHhcCCCceEEEEe
Confidence 2 236788999999999999887664
No 448
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=95.90 E-value=0.02 Score=62.11 Aligned_cols=59 Identities=22% Similarity=0.299 Sum_probs=47.4
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHH
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKF 591 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~ 591 (759)
+.+.||.+|.|+|.|.+|..+.. ..+|.+||-.... +.|++-+ ++ ++.++++.+..-+.
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia-~~a~~iv~~N~~--~~ii~vi~gkvEdi 121 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIA-DFARKIVKDNGL--EDVITVIKGKVEDI 121 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHH-HHHHHHHHhcCc--cceEEEeecceEEE
Confidence 45789999999999999999996 5599999986554 8888877 44 56788888865554
No 449
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=95.83 E-value=0.038 Score=59.24 Aligned_cols=102 Identities=14% Similarity=0.168 Sum_probs=67.2
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHH---HHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLN---LAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMS 605 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~---vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~ 605 (759)
..++||.||+|.|.-.--+.+.-+. .|.++|-++--+- .++++.|. + ........|++.+.. .
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA~-~ViGiDP~~lf~~QF~~i~~~lg~--~-~~~~~lplgvE~Lp~-~--------- 180 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGAK-SVIGIDPSPLFYLQFEAIKHFLGQ--D-PPVFELPLGVEDLPN-L--------- 180 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCCC-EEEEECCChHHHHHHHHHHHHhCC--C-ccEEEcCcchhhccc-c---------
Confidence 4579999999999887656655333 7888876665433 34555563 2 233344567777654 2
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 004354 606 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 677 (759)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~ 677 (759)
..||+||. -..---+..| -+.|..+++.|++||.||+-.
T Consensus 181 -----------------------~~FDtVF~----MGVLYHrr~P------l~~L~~Lk~~L~~gGeLvLET 219 (315)
T PF08003_consen 181 -----------------------GAFDTVFS----MGVLYHRRSP------LDHLKQLKDSLRPGGELVLET 219 (315)
T ss_pred -----------------------CCcCEEEE----eeehhccCCH------HHHHHHHHHhhCCCCEEEEEE
Confidence 57999997 1110112223 678999999999999999764
No 450
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=95.81 E-value=0.098 Score=52.03 Aligned_cols=95 Identities=19% Similarity=0.169 Sum_probs=64.1
Q ss_pred CCCCCeEEEECCCcchhHHHHHHh-CC-CeEEEEeCCHHHHHHHHHHhccCCCCcEEEEe-ecccCC-----------Cc
Q 004354 66 SSPPPQILVPGCGNSRLSEHLYDA-GF-HGITNVDFSKVVISDMLRRNVRDRSDMRWRVM-DMTSMQ-----------GG 131 (759)
Q Consensus 66 ~~~~~~ILDlGCG~G~ls~~L~~~-G~-~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~-D~~~~~-----------gt 131 (759)
..|+.+|||+||..|..+.-..+. +. .-|.|||+-.. ...+.++++++ |+++.. ..
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~----------~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~ 136 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI----------EPPEGATIIQGNDVTDPETYRKIFEALPNRP 136 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec----------cCCCCcccccccccCCHHHHHHHHHhCCCCc
Confidence 367899999999999999876665 22 24999997541 12234666666 777754 56
Q ss_pred ccEEEeCCC---------ChhH----HHHHHHHHHHhcccCcEEEEEEcCch
Q 004354 132 LDALMEPEL---------GHKL----GNQYLSEVKRLLKSGGKFVCLTLAES 170 (759)
Q Consensus 132 fD~Ii~~~~---------~~~~----~~~~l~ei~rvLkpGG~liiit~~~~ 170 (759)
.|+|++... .|.. -..++.-....++|+|.|+|-.+...
T Consensus 137 VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~ 188 (232)
T KOG4589|consen 137 VDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGS 188 (232)
T ss_pred ccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCC
Confidence 899998542 1222 22233444567789999999998653
No 451
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=95.79 E-value=0.034 Score=57.19 Aligned_cols=121 Identities=18% Similarity=0.263 Sum_probs=85.3
Q ss_pred cccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh-CCC-eEEEEeCCHHHHHHHHHHhccCCCCcEEEEe
Q 004354 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFH-GITNVDFSKVVISDMLRRNVRDRSDMRWRVM 123 (759)
Q Consensus 46 W~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~-G~~-~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~ 123 (759)
|..-...+..-+.-=+.....+|+.+||=+|+++|+...+..+. |.. -|+++++|+..=..... .++.++|+--+.-
T Consensus 134 WnPfrSKLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~n-mAkkRtNiiPIiE 212 (317)
T KOG1596|consen 134 WNPFRSKLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLIN-MAKKRTNIIPIIE 212 (317)
T ss_pred eChHHHHHHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHH-HhhccCCceeeec
Confidence 54433334433332223333478999999999999999888875 332 49999999854433222 2345678888899
Q ss_pred ecccCC------CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEEc
Q 004354 124 DMTSMQ------GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 124 D~~~~~------gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit~ 167 (759)
|++... +..|+|++.-........+.-+..-.||+||.|++..-
T Consensus 213 DArhP~KYRmlVgmVDvIFaDvaqpdq~RivaLNA~~FLk~gGhfvisik 262 (317)
T KOG1596|consen 213 DARHPAKYRMLVGMVDVIFADVAQPDQARIVALNAQYFLKNGGHFVISIK 262 (317)
T ss_pred cCCCchheeeeeeeEEEEeccCCCchhhhhhhhhhhhhhccCCeEEEEEe
Confidence 998765 88999999766666666677788999999999987753
No 452
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=95.71 E-value=0.079 Score=55.60 Aligned_cols=96 Identities=21% Similarity=0.281 Sum_probs=66.6
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 608 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~ 608 (759)
...++|.||.|.|..+.-+..++ .+|.+-|+++.|...-++. | .+|+-.| +|- +
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f--~~v~aTE~S~~Mr~rL~~k-g------~~vl~~~--~w~-~-------------- 147 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF--KEVYATEASPPMRWRLSKK-G------FTVLDID--DWQ-Q-------------- 147 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc--ceEEeecCCHHHHHHHHhC-C------CeEEehh--hhh-c--------------
Confidence 56789999999999998888886 4699999999997654432 3 3455333 331 1
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEec
Q 004354 609 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 678 (759)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~ 678 (759)
.+.+||+|.+ ++--|-.. .| ...|+.+++.|+|+|.+++-++
T Consensus 148 ------------------~~~~fDvIsc-LNvLDRc~---~P------~~LL~~i~~~l~p~G~lilAvV 189 (265)
T PF05219_consen 148 ------------------TDFKFDVISC-LNVLDRCD---RP------LTLLRDIRRALKPNGRLILAVV 189 (265)
T ss_pred ------------------cCCceEEEee-hhhhhccC---CH------HHHHHHHHHHhCCCCEEEEEEE
Confidence 1357999985 11111100 02 6789999999999998886654
No 453
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=95.69 E-value=0.23 Score=51.11 Aligned_cols=143 Identities=15% Similarity=0.200 Sum_probs=91.8
Q ss_pred HHHHHHHHHhhhhhhhhhhcccCC-CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCH---HHHHHHHhhcCCCCCCCe
Q 004354 506 YHMGIISGFTLISSYLESVASVGK-SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDL---TMLNLAEDYFGFTQDKSL 581 (759)
Q Consensus 506 Y~~~m~~~l~l~~~~~~~~~~~~~-~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp---~v~~vA~~~Fgl~~~~rl 581 (759)
|.+-++.++.+.... .. +.+++.||.|+|.=...|.=.+|+.+++-||-.. .-++.+.+-+|+ +++
T Consensus 50 ~~rHilDSl~~~~~~-------~~~~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L---~nv 119 (215)
T COG0357 50 WQRHILDSLVLLPYL-------DGKAKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGL---ENV 119 (215)
T ss_pred HHHHHHHHhhhhhcc-------cccCCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCC---CCe
Confidence 555566555544431 22 6899999999993333344567889999999876 456677777887 569
Q ss_pred EEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCc-eeEEEEcCCCCCCCCCCCcCCCCCChHHHH
Q 004354 582 KVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNAR-VDILIIDVDSPDSSSGMTCPAADFVEGSFL 660 (759)
Q Consensus 582 ~v~i~Da~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl 660 (759)
+++.+.+-+|-.+ .+ ||+|..=+.++ | ..+.
T Consensus 120 ~i~~~RaE~~~~~----------------------------------~~~~D~vtsRAva~-----L---------~~l~ 151 (215)
T COG0357 120 EIVHGRAEEFGQE----------------------------------KKQYDVVTSRAVAS-----L---------NVLL 151 (215)
T ss_pred EEehhhHhhcccc----------------------------------cccCcEEEeehccc-----h---------HHHH
Confidence 9999988877322 23 99999865554 1 5678
Q ss_pred HHHHHccCcCcEEEEEecCCChhHHHHHHHHH---HHhcCceEEEeecC
Q 004354 661 LTVKDALSEQGLFIVNLVSRSQATKDMVISRM---KMVFNHLFCLQLEE 706 (759)
Q Consensus 661 ~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l---~~vF~~v~~~~~~~ 706 (759)
+.+...|++||.+++-............-..+ .-.+..++.+..+.
T Consensus 152 e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~~~~~~~~~~~~~~~p~ 200 (215)
T COG0357 152 ELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILPLGGQVEKVFSLTVPE 200 (215)
T ss_pred HHHHHhcccCCcchhhhHHhhhhhHHHHHHHHHhhcCcEEEEEEeecCC
Confidence 88999999988876544433333333322222 22333455555444
No 454
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=95.66 E-value=0.054 Score=57.63 Aligned_cols=44 Identities=27% Similarity=0.361 Sum_probs=39.7
Q ss_pred CCCeEEEEccccc----HHHHHHHHhCC-----CCcEEEEEcCHHHHHHHHhh
Q 004354 529 KSVKAVVIGLGAG----LLPMFLHECMP-----FVGIEAVELDLTMLNLAEDY 572 (759)
Q Consensus 529 ~~~~vLviGlG~G----~l~~~L~~~~p-----~~~i~~VEiDp~v~~vA~~~ 572 (759)
.+.+|...|+++| +++|.|.+.+| ..+|.+.|||..+++.|+.-
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G 148 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAG 148 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcC
Confidence 5789999999999 89999999986 36999999999999999764
No 455
>PRK10742 putative methyltransferase; Provisional
Probab=95.63 E-value=0.082 Score=55.38 Aligned_cols=91 Identities=11% Similarity=0.023 Sum_probs=65.7
Q ss_pred eeecCCccchHHHHHH--------HHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHH
Q 004354 495 LKVYHGYLASSYHMGI--------ISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTML 566 (759)
Q Consensus 495 ~~~d~~~L~~~Y~~~m--------~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~ 566 (759)
+.+|+-+-...|-+.. +-++.+ ..+..++||.+=+|.|.....+... +.+|+.||-+|.+.
T Consensus 55 v~vDF~~~~~a~rR~~~~g~~~~l~kAvgl---------k~g~~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~va 123 (250)
T PRK10742 55 IFVDFVGGAMAHRRKFGGGRGEAVAKAVGI---------KGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVA 123 (250)
T ss_pred eEEEccCchHHHHHHhcCCCccHHHHHhCC---------CCCCCCEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHH
Confidence 5788877666665432 222211 1244569999999999998877766 45799999999999
Q ss_pred HHHHhhcCC-------CC--CCCeEEEEccHHHHHHhhc
Q 004354 567 NLAEDYFGF-------TQ--DKSLKVHITDGIKFVREMK 596 (759)
Q Consensus 567 ~vA~~~Fgl-------~~--~~rl~v~i~Da~~~l~~~~ 596 (759)
.+.++.+.- .. ..|++++.+|+.+|++...
T Consensus 124 alL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~ 162 (250)
T PRK10742 124 ALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDIT 162 (250)
T ss_pred HHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCC
Confidence 998877632 11 1689999999999998753
No 456
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=95.58 E-value=0.051 Score=58.82 Aligned_cols=74 Identities=12% Similarity=0.061 Sum_probs=55.4
Q ss_pred hhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccc
Q 004354 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTS 127 (759)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~ 127 (759)
+.+...+..++.. .+++.++|.=||.|..+..+++. +...|+|+|.++.+++.+++++.....++.+++++..+
T Consensus 6 pVll~Evl~~L~~---~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~ 80 (305)
T TIGR00006 6 SVLLDEVVEGLNI---KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFAN 80 (305)
T ss_pred chhHHHHHHhcCc---CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHH
Confidence 4455555555543 57789999999999999999876 22469999999999999988875444456666665544
No 457
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.57 E-value=0.23 Score=50.10 Aligned_cols=121 Identities=17% Similarity=0.177 Sum_probs=83.6
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHH----HHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTM----LNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDE 603 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v----~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~ 603 (759)
....+||=||.-.|+.++.+....+.-.|-+||..|.+ +++|++. +++-=+.+||..--+-..
T Consensus 75 ~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R------~Ni~PIL~DA~~P~~Y~~------- 141 (231)
T COG1889 75 KEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR------PNIIPILEDARKPEKYRH------- 141 (231)
T ss_pred CCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC------CCceeeecccCCcHHhhh-------
Confidence 45679999999999999999999987799999999865 4566553 456668888765321111
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCC---
Q 004354 604 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR--- 680 (759)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~--- 680 (759)
--...|+|+.|+-.++. ..=+..++..-|+++|-+++-+-.|
T Consensus 142 -----------------------~Ve~VDviy~DVAQp~Q------------a~I~~~Na~~FLk~~G~~~i~iKArSId 186 (231)
T COG1889 142 -----------------------LVEKVDVIYQDVAQPNQ------------AEILADNAEFFLKKGGYVVIAIKARSID 186 (231)
T ss_pred -----------------------hcccccEEEEecCCchH------------HHHHHHHHHHhcccCCeEEEEEEeeccc
Confidence 02469999999976643 1457788899999999444443333
Q ss_pred ----ChhHHHHHHHHHHHhc
Q 004354 681 ----SQATKDMVISRMKMVF 696 (759)
Q Consensus 681 ----~~~~~~~v~~~l~~vF 696 (759)
..+..+.-+.+|..-+
T Consensus 187 vT~dp~~vf~~ev~kL~~~~ 206 (231)
T COG1889 187 VTADPEEVFKDEVEKLEEGG 206 (231)
T ss_pred ccCCHHHHHHHHHHHHHhcC
Confidence 2334444456665544
No 458
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=95.51 E-value=0.057 Score=57.11 Aligned_cols=99 Identities=16% Similarity=0.141 Sum_probs=62.6
Q ss_pred CeEEEECCCc--chhHHHHHHh--CCCeEEEEeCCHHHHHHHHHHhccCCCC--cEEEEeecccCC---------Cccc-
Q 004354 70 PQILVPGCGN--SRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDRSD--MRWRVMDMTSMQ---------GGLD- 133 (759)
Q Consensus 70 ~~ILDlGCG~--G~ls~~L~~~--G~~~VtgIDiS~~~I~~a~~r~~~~~~~--i~f~~~D~~~~~---------gtfD- 133 (759)
...||||||- .....++++. .-.+|+-+|+.|.++..++..+.. .++ ..++++|+++.. +.+|
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~-~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~ 148 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLAD-NPRGRTAYVQADLRDPEAILAHPEVRGLLDF 148 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT--TTSEEEEEE--TT-HHHHHCSHHHHCC--T
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcC-CCCccEEEEeCCCCCHHHHhcCHHHHhcCCC
Confidence 5799999994 3345556554 123699999999999988887643 345 889999999876 4555
Q ss_pred ----EEEeCCCCh-----hHHHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 134 ----ALMEPELGH-----KLGNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 134 ----~Ii~~~~~~-----~~~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
+++.....| .....+++.+...|.||.++++.....
T Consensus 149 ~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~ 193 (267)
T PF04672_consen 149 DRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATD 193 (267)
T ss_dssp TS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-
T ss_pred CCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCC
Confidence 444443322 238899999999999999999887654
No 459
>PRK04148 hypothetical protein; Provisional
Probab=95.48 E-value=0.044 Score=52.08 Aligned_cols=54 Identities=20% Similarity=0.317 Sum_probs=43.6
Q ss_pred CCCCeEEEEcccccH-HHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHH
Q 004354 528 GKSVKAVVIGLGAGL-LPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIK 590 (759)
Q Consensus 528 ~~~~~vLviGlG~G~-l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~ 590 (759)
.+..++|+||+|.|. ++..|.+. +..|++||++|..++.|++. .+.++++|-.+
T Consensus 15 ~~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~~-------~~~~v~dDlf~ 69 (134)
T PRK04148 15 GKNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKKL-------GLNAFVDDLFN 69 (134)
T ss_pred ccCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHHh-------CCeEEECcCCC
Confidence 345789999999995 88888865 46999999999999998776 26788888543
No 460
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=95.46 E-value=0.21 Score=53.23 Aligned_cols=144 Identities=17% Similarity=0.182 Sum_probs=93.4
Q ss_pred ecCCccchHHHHHHHHHHh----hhhhhhhhhcccCCCCeEEEEccccc-HHHHHHHHhCCC--CcEEEEEcCHHHHHHH
Q 004354 497 VYHGYLASSYHMGIISGFT----LISSYLESVASVGKSVKAVVIGLGAG-LLPMFLHECMPF--VGIEAVELDLTMLNLA 569 (759)
Q Consensus 497 ~d~~~L~~~Y~~~m~~~l~----l~~~~~~~~~~~~~~~~vLviGlG~G-~l~~~L~~~~p~--~~i~~VEiDp~v~~vA 569 (759)
+|..||...=-+++-.--. ++...+......+.+.+||.|-.|.| .+--.|..+ |. ..|..+|.+|.-++.+
T Consensus 99 iDr~yLnaiGWrGIR~Rk~~l~~~i~~ai~~L~~~g~pvrIlDIAaG~GRYvlDal~~~-~~~~~~i~LrDys~~Nv~~g 177 (311)
T PF12147_consen 99 IDRNYLNAIGWRGIRQRKVHLEELIRQAIARLREQGRPVRILDIAAGHGRYVLDALEKH-PERPDSILLRDYSPINVEKG 177 (311)
T ss_pred HHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeccCCcHHHHHHHHhC-CCCCceEEEEeCCHHHHHHH
Confidence 7778887654444321111 11111122223478999999999999 444455555 54 6999999999999999
Q ss_pred Hhhc---CCCCCCCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCC
Q 004354 570 EDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSG 646 (759)
Q Consensus 570 ~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g 646 (759)
++.. || .+-++++.+||.+.-.-.+ -..+++++|+ +|
T Consensus 178 ~~li~~~gL--~~i~~f~~~dAfd~~~l~~------------------------------l~p~P~l~iV--------sG 217 (311)
T PF12147_consen 178 RALIAERGL--EDIARFEQGDAFDRDSLAA------------------------------LDPAPTLAIV--------SG 217 (311)
T ss_pred HHHHHHcCC--ccceEEEecCCCCHhHhhc------------------------------cCCCCCEEEE--------ec
Confidence 8776 66 4556999999988622211 1366889887 12
Q ss_pred CCcCCCCCCh----HHHHHHHHHccCcCcEEEEEecCCChhH
Q 004354 647 MTCPAADFVE----GSFLLTVKDALSEQGLFIVNLVSRSQAT 684 (759)
Q Consensus 647 ~scPp~~f~~----~~fl~~~~~~L~~~Gilv~N~~~~~~~~ 684 (759)
+ -.-|-+ ..-|.-+.++|.|||.+|..--+.++++
T Consensus 218 L---~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQl 256 (311)
T PF12147_consen 218 L---YELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQL 256 (311)
T ss_pred c---hhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcch
Confidence 2 222223 3356778899999999998776666554
No 461
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=95.40 E-value=0.081 Score=56.15 Aligned_cols=100 Identities=15% Similarity=0.201 Sum_probs=77.9
Q ss_pred CCCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhcc-----CCCCcEEEEeecccCC-----CcccEE
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVR-----DRSDMRWRVMDMTSMQ-----GGLDAL 135 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~-----~~~~i~f~~~D~~~~~-----gtfD~I 135 (759)
....++|.||-|.|...+..... .+.++.-+|+...+++..++-... .++++...-+|-..+- ++||+|
T Consensus 120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVi 199 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVI 199 (337)
T ss_pred CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEE
Confidence 44679999999999999877765 356799999999999877664421 3577888888865543 899999
Q ss_pred EeCCCC---hh---HHHHHHHHHHHhcccCcEEEEEE
Q 004354 136 MEPELG---HK---LGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 136 i~~~~~---~~---~~~~~l~ei~rvLkpGG~liiit 166 (759)
+..... .. ..+.++..+.+.||+||+.++..
T Consensus 200 i~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 200 ITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred EEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 985422 11 17889999999999999999886
No 462
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=95.35 E-value=0.033 Score=60.53 Aligned_cols=96 Identities=24% Similarity=0.295 Sum_probs=65.5
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccc
Q 004354 530 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 609 (759)
Q Consensus 530 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~ 609 (759)
-..++.+|+|.|.+...+...+|. |..|+.|..-+..++.+++ + .+.-+-+|+.+= .
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~--ik~infdlp~v~~~a~~~~-~---gV~~v~gdmfq~---~-------------- 234 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPH--IKGINFDLPFVLAAAPYLA-P---GVEHVAGDMFQD---T-------------- 234 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCCC--CceeecCHHHHHhhhhhhc-C---Ccceeccccccc---C--------------
Confidence 467899999999888877778776 7777777666655556654 2 267777876552 2
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEE-----cCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEE--EecCC
Q 004354 610 NEITSNNTRSCNGNCTASNARVDILII-----DVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV--NLVSR 680 (759)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~yD~Ii~-----D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~--N~~~~ 680 (759)
++=|+|++ |..+.|- ..||++|++.|.|+|.+++ |+.+.
T Consensus 235 -------------------P~~daI~mkWiLhdwtDedc-------------vkiLknC~~sL~~~GkIiv~E~V~p~ 280 (342)
T KOG3178|consen 235 -------------------PKGDAIWMKWILHDWTDEDC-------------VKILKNCKKSLPPGGKIIVVENVTPE 280 (342)
T ss_pred -------------------CCcCeEEEEeecccCChHHH-------------HHHHHHHHHhCCCCCEEEEEeccCCC
Confidence 23457775 4433331 5699999999999996654 54443
No 463
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=95.19 E-value=0.1 Score=56.61 Aligned_cols=65 Identities=11% Similarity=0.076 Sum_probs=54.3
Q ss_pred CeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhc
Q 004354 531 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMK 596 (759)
Q Consensus 531 ~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~ 596 (759)
..++..=+|+|+-+..+...+|..+|.++|.||.+++.|++.+. ...+|+.+++++-.++.+...
T Consensus 22 giyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~-~~~~R~~~i~~nF~~l~~~l~ 86 (305)
T TIGR00006 22 GIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLS-DFEGRVVLIHDNFANFFEHLD 86 (305)
T ss_pred CEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHh-hcCCcEEEEeCCHHHHHHHHH
Confidence 46888889999999888888777899999999999999998762 125699999999888766553
No 464
>PRK10742 putative methyltransferase; Provisional
Probab=95.14 E-value=0.065 Score=56.13 Aligned_cols=75 Identities=9% Similarity=-0.018 Sum_probs=59.0
Q ss_pred CCCC--eEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccC------C----CCcEEEEeecccCC----C
Q 004354 67 SPPP--QILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD------R----SDMRWRVMDMTSMQ----G 130 (759)
Q Consensus 67 ~~~~--~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~------~----~~i~f~~~D~~~~~----g 130 (759)
+++. +|||+=+|+|..+..++..|++ |+++|-++.+....+..+... . .+++.+++|..++- .
T Consensus 85 k~g~~p~VLD~TAGlG~Da~~las~G~~-V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~ 163 (250)
T PRK10742 85 KGDYLPDVVDATAGLGRDAFVLASVGCR-VRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITP 163 (250)
T ss_pred CCCCCCEEEECCCCccHHHHHHHHcCCE-EEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCC
Confidence 4444 8999999999999999999997 999999999887776655431 1 35778888876653 5
Q ss_pred cccEEEeCCCCh
Q 004354 131 GLDALMEPELGH 142 (759)
Q Consensus 131 tfD~Ii~~~~~~ 142 (759)
.||+|+..+..+
T Consensus 164 ~fDVVYlDPMfp 175 (250)
T PRK10742 164 RPQVVYLDPMFP 175 (250)
T ss_pred CCcEEEECCCCC
Confidence 799999977443
No 465
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=95.10 E-value=0.085 Score=57.99 Aligned_cols=146 Identities=14% Similarity=0.210 Sum_probs=89.8
Q ss_pred CCCeEEEEccc-ccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc-----CCC-----CCCCeEEEEccHHHHHHhhcc
Q 004354 529 KSVKAVVIGLG-AGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF-----GFT-----QDKSLKVHITDGIKFVREMKS 597 (759)
Q Consensus 529 ~~~~vLviGlG-~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F-----gl~-----~~~rl~v~i~Da~~~l~~~~~ 597 (759)
...+||.||+| ||=|..|.... -..+.+|||+++.++-|++.. +-. .+-...++.+|...- ....
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~--i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~--~l~~ 137 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAK--IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSE--SLRE 137 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCS--HHHC
T ss_pred CCCeEEEecCCCchhHHHHHhcC--CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccc--hhhh
Confidence 56899999999 77899998864 358999999999999998776 100 012345677775421 1110
Q ss_pred cCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCCh----HHHHHHHHHccCcCcEE
Q 004354 598 SSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE----GSFLLTVKDALSEQGLF 673 (759)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~----~~fl~~~~~~L~~~Gil 673 (759)
.++ ....+||+|=+=. |-.-.|-+ ..||.++.++|+|||+|
T Consensus 138 --------~~~-----------------~~~~~FDvVScQF----------alHY~Fese~~ar~~l~Nvs~~Lk~GG~F 182 (331)
T PF03291_consen 138 --------KLP-----------------PRSRKFDVVSCQF----------ALHYAFESEEKARQFLKNVSSLLKPGGYF 182 (331)
T ss_dssp --------TSS-----------------STTS-EEEEEEES-----------GGGGGSSHHHHHHHHHHHHHTEEEEEEE
T ss_pred --------hcc-----------------ccCCCcceeehHH----------HHHHhcCCHHHHHHHHHHHHHhcCCCCEE
Confidence 000 0135899997611 11233332 45999999999999999
Q ss_pred EEEecCCChhHHHHHHHHHHH--------hcC-ceEEEeecCC------ccEEEEEecCC
Q 004354 674 IVNLVSRSQATKDMVISRMKM--------VFN-HLFCLQLEED------VNLVLFGLSSE 718 (759)
Q Consensus 674 v~N~~~~~~~~~~~v~~~l~~--------vF~-~v~~~~~~~~------~N~Vl~a~~~~ 718 (759)
+.-++. .. .++.+|+. .|. .+|.+..+.+ ++...|-+...
T Consensus 183 IgT~~d--~~---~i~~~l~~~~~~~~~~~~gN~~y~I~f~~~~~~~~fG~~Y~F~L~~~ 237 (331)
T PF03291_consen 183 IGTTPD--SD---EIVKRLREKKSNSEKKKFGNSVYSIEFDSDDFFPPFGAKYDFYLEDA 237 (331)
T ss_dssp EEEEE---HH---HHHCCHHC-EEECCCSCSETSSEEEEESCCSS--CTTEEEEEEETTC
T ss_pred EEEecC--HH---HHHHHHHhhcccccccccCCccEEEEecccCCCCCCCcEEEEEecCc
Confidence 988743 22 24555555 233 4788877666 66777766554
No 466
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=95.02 E-value=0.066 Score=60.69 Aligned_cols=152 Identities=16% Similarity=0.157 Sum_probs=97.1
Q ss_pred HHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHH----HHhCCCCcEEEEEcCHHHHHHHHhhcCC-CCCC
Q 004354 505 SYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFL----HECMPFVGIEAVELDLTMLNLAEDYFGF-TQDK 579 (759)
Q Consensus 505 ~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L----~~~~p~~~i~~VEiDp~v~~vA~~~Fgl-~~~~ 579 (759)
.|-+|+..+|.=..+ .++......++++|+|=|-|.... ......+++.+||-+|..+-.-+. ..+ ..+.
T Consensus 347 ~Yq~Ai~~AL~Drvp----d~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~ 421 (649)
T KOG0822|consen 347 QYQQAILKALLDRVP----DESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDN 421 (649)
T ss_pred HHHHHHHHHHHhhCc----ccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcC
Confidence 477888877642211 122334677899999999655422 233456799999999987665544 222 2588
Q ss_pred CeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHH
Q 004354 580 SLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSF 659 (759)
Q Consensus 580 rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~f 659 (759)
+++++-+|-+.|-.- ..+.|+|+..+-.+-. ..=+++|.
T Consensus 422 ~Vtii~~DMR~w~ap---------------------------------~eq~DI~VSELLGSFG--------DNELSPEC 460 (649)
T KOG0822|consen 422 RVTIISSDMRKWNAP---------------------------------REQADIIVSELLGSFG--------DNELSPEC 460 (649)
T ss_pred eeEEEeccccccCCc---------------------------------hhhccchHHHhhcccc--------CccCCHHH
Confidence 999999998888411 2568999877654432 22356999
Q ss_pred HHHHHHccCcCcEEEEEecC------CChhHHHHHHHHHHH--hcCceEEEe
Q 004354 660 LLTVKDALSEQGLFIVNLVS------RSQATKDMVISRMKM--VFNHLFCLQ 703 (759)
Q Consensus 660 l~~~~~~L~~~Gilv~N~~~------~~~~~~~~v~~~l~~--vF~~v~~~~ 703 (759)
|.-+...|+|+||.|=--.+ .+..++.. +..... .|...|...
T Consensus 461 LDG~q~fLkpdgIsIP~sYtSyi~PImS~~l~q~-v~a~~~~~~fe~~YVV~ 511 (649)
T KOG0822|consen 461 LDGAQKFLKPDGISIPSSYTSYIAPIMSPKLYQE-VKATNDPNAFEAPYVVL 511 (649)
T ss_pred HHHHHhhcCCCceEccchhhhhhcccccHHHHHH-HHhcCCccccccceEEE
Confidence 99999999999998822111 12333433 333333 777666554
No 467
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.91 E-value=0.15 Score=54.92 Aligned_cols=48 Identities=33% Similarity=0.473 Sum_probs=43.1
Q ss_pred CCCCeEEEEccc-ccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC
Q 004354 528 GKSVKAVVIGLG-AGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT 576 (759)
Q Consensus 528 ~~~~~vLviGlG-~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~ 576 (759)
+...+|||+|.| .|.++....+.+.-.+|.++|+++.-+++|++ ||..
T Consensus 168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga~ 216 (354)
T KOG0024|consen 168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGAT 216 (354)
T ss_pred ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCCe
Confidence 456799999999 78888888889988899999999999999999 9984
No 468
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=94.85 E-value=0.081 Score=61.95 Aligned_cols=63 Identities=19% Similarity=0.150 Sum_probs=46.1
Q ss_pred CCCeEEEEcccccHHHHHHHHhCC--------CCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHH
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMP--------FVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF 591 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p--------~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~ 591 (759)
...+||..|+|+|.+...+....+ ...+.++|||+..+..|+..+.....-...++.+|.+..
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~ 101 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSY 101 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeecccccc
Confidence 456999999999977766655543 257899999999999999876332223467777776654
No 469
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=94.85 E-value=0.073 Score=57.36 Aligned_cols=75 Identities=16% Similarity=0.062 Sum_probs=44.1
Q ss_pred CCeEEEECCCcchhHHHHHHh--CCCeEEEEeCCHHHHHHHHHHhccC---CCCcEEEEee----cccCC----CcccEE
Q 004354 69 PPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRD---RSDMRWRVMD----MTSMQ----GGLDAL 135 (759)
Q Consensus 69 ~~~ILDlGCG~G~ls~~L~~~--G~~~VtgIDiS~~~I~~a~~r~~~~---~~~i~f~~~D----~~~~~----gtfD~I 135 (759)
..++||||||.+-.---|... |+ +++|+|+++.+++.|++..... ...|+.+... +...- ..||+.
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W-~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft 181 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGW-SFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFT 181 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCC-eEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEE
Confidence 468999999999765444332 66 5999999999999999987654 3457666542 21111 679999
Q ss_pred EeCCCChhH
Q 004354 136 MEPELGHKL 144 (759)
Q Consensus 136 i~~~~~~~~ 144 (759)
+|++..+..
T Consensus 182 mCNPPFy~s 190 (299)
T PF05971_consen 182 MCNPPFYSS 190 (299)
T ss_dssp EE-----SS
T ss_pred ecCCccccC
Confidence 998754443
No 470
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=94.83 E-value=0.29 Score=55.80 Aligned_cols=114 Identities=11% Similarity=0.172 Sum_probs=84.1
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
....+++.+=+|.|+.+..|... ..+|.+||++|+.++.|++.-....-.++.++.+|+.++.....
T Consensus 292 ~~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~----------- 358 (432)
T COG2265 292 AGGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWW----------- 358 (432)
T ss_pred cCCCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhcc-----------
Confidence 34568999999999999888854 36999999999999999998744333459999999999987753
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChhHHHH
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDM 687 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~~~~~ 687 (759)
....+|+||+|.--. | .++++++.+.+ +.|..|+- +.|....+.+.
T Consensus 359 -------------------~~~~~d~VvvDPPR~----G--------~~~~~lk~l~~-~~p~~IvY--VSCNP~TlaRD 404 (432)
T COG2265 359 -------------------EGYKPDVVVVDPPRA----G--------ADREVLKQLAK-LKPKRIVY--VSCNPATLARD 404 (432)
T ss_pred -------------------ccCCCCEEEECCCCC----C--------CCHHHHHHHHh-cCCCcEEE--EeCCHHHHHHH
Confidence 135799999975222 3 34678877766 45555544 55666666665
Q ss_pred H
Q 004354 688 V 688 (759)
Q Consensus 688 v 688 (759)
+
T Consensus 405 l 405 (432)
T COG2265 405 L 405 (432)
T ss_pred H
Confidence 3
No 471
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=94.82 E-value=0.23 Score=55.13 Aligned_cols=100 Identities=23% Similarity=0.201 Sum_probs=73.2
Q ss_pred eEEEEccc-ccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEc-cHHHHHHhhcccCcccccccccc
Q 004354 532 KAVVIGLG-AGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHIT-DGIKFVREMKSSSATDEMSVVHG 609 (759)
Q Consensus 532 ~vLviGlG-~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~-Da~~~l~~~~~~~~~~~~~~~~~ 609 (759)
+|+|+|.| .|.++..+.+.++..+|.++|+++.-++.|++++|.. .+..... |...-+.+..
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~---~~~~~~~~~~~~~~~~~t------------- 234 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGAD---VVVNPSEDDAGAEILELT------------- 234 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCe---EeecCccccHHHHHHHHh-------------
Confidence 89999999 6888888888888889999999999999999999752 1111111 4444444433
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCC
Q 004354 610 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 680 (759)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~ 680 (759)
.+..+|++|- .++ ....+..+.+.++++|.+++.-+..
T Consensus 235 -----------------~g~g~D~vie--~~G--------------~~~~~~~ai~~~r~gG~v~~vGv~~ 272 (350)
T COG1063 235 -----------------GGRGADVVIE--AVG--------------SPPALDQALEALRPGGTVVVVGVYG 272 (350)
T ss_pred -----------------CCCCCCEEEE--CCC--------------CHHHHHHHHHHhcCCCEEEEEeccC
Confidence 1346999987 222 2558999999999999888665443
No 472
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=94.81 E-value=0.15 Score=52.94 Aligned_cols=105 Identities=19% Similarity=0.283 Sum_probs=59.8
Q ss_pred CCCeEEEEccccc-HHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004354 529 KSVKAVVIGLGAG-LLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 604 (759)
Q Consensus 529 ~~~~vLviGlG~G-~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~ 604 (759)
..++||+||=+.- +++..|. +.| .+|++||||+.+++.-++.- |+ .++.+..|.++=+.+.-
T Consensus 44 ~gk~il~lGDDDLtSlA~al~-~~~-~~I~VvDiDeRll~fI~~~a~~~gl----~i~~~~~DlR~~LP~~~-------- 109 (243)
T PF01861_consen 44 EGKRILFLGDDDLTSLALALT-GLP-KRITVVDIDERLLDFINRVAEEEGL----PIEAVHYDLRDPLPEEL-------- 109 (243)
T ss_dssp TT-EEEEES-TT-HHHHHHHH-T---SEEEEE-S-HHHHHHHHHHHHHHT------EEEE---TTS---TTT--------
T ss_pred cCCEEEEEcCCcHHHHHHHhh-CCC-CeEEEEEcCHHHHHHHHHHHHHcCC----ceEEEEecccccCCHHH--------
Confidence 3589999997766 5555553 334 59999999999998877554 66 29999999887665532
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCc-EEEEEecCCC
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQG-LFIVNLVSRS 681 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~G-ilv~N~~~~~ 681 (759)
.++||+++.|. +....|| .=|+......|+..| ...+.+...+
T Consensus 110 -----------------------~~~fD~f~TDP--PyT~~G~---------~LFlsRgi~~Lk~~g~~gy~~~~~~~ 153 (243)
T PF01861_consen 110 -----------------------RGKFDVFFTDP--PYTPEGL---------KLFLSRGIEALKGEGCAGYFGFTHKE 153 (243)
T ss_dssp -----------------------SS-BSEEEE-----SSHHHH---------HHHHHHHHHTB-STT-EEEEEE-TTT
T ss_pred -----------------------hcCCCEEEeCC--CCCHHHH---------HHHHHHHHHHhCCCCceEEEEEecCc
Confidence 37899999964 2222233 458999999998866 5555554443
No 473
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.72 E-value=0.24 Score=50.45 Aligned_cols=132 Identities=14% Similarity=0.135 Sum_probs=89.8
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCC-CcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHH-----HHHHhhcccCccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPF-VGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGI-----KFVREMKSSSATD 602 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~-~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~-----~~l~~~~~~~~~~ 602 (759)
....|+.||.--|+...++.++... .+|.+||++|.- ..+.+.++.+|.. +=|.+.-
T Consensus 45 ~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~-----------~~~~V~~iq~d~~~~~~~~~l~~~l------ 107 (205)
T COG0293 45 PGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK-----------PIPGVIFLQGDITDEDTLEKLLEAL------ 107 (205)
T ss_pred CCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc-----------cCCCceEEeeeccCccHHHHHHHHc------
Confidence 4578999999999999999998754 469999998852 2344677766643 2222221
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCC---CCCChHHHHHHHHHccCcCcEEEEEecC
Q 004354 603 EMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPA---ADFVEGSFLLTVKDALSEQGLFIVNLVS 679 (759)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp---~~f~~~~fl~~~~~~L~~~Gilv~N~~~ 679 (759)
....+|+|+.|....- .|...-. ..-+....++.+...|.++|.|++=++-
T Consensus 108 ------------------------~~~~~DvV~sD~ap~~--~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fq 161 (205)
T COG0293 108 ------------------------GGAPVDVVLSDMAPNT--SGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQ 161 (205)
T ss_pred ------------------------CCCCcceEEecCCCCc--CCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEe
Confidence 1345899999986632 2221111 1112445567777899999999988764
Q ss_pred CChhHHHHHHHHHHHhcCceEEEeec
Q 004354 680 RSQATKDMVISRMKMVFNHLFCLQLE 705 (759)
Q Consensus 680 ~~~~~~~~v~~~l~~vF~~v~~~~~~ 705 (759)
.... +.++..+++.|..|...+..
T Consensus 162 g~~~--~~~l~~~~~~F~~v~~~KP~ 185 (205)
T COG0293 162 GEDF--EDLLKALRRLFRKVKIFKPK 185 (205)
T ss_pred CCCH--HHHHHHHHHhhceeEEecCc
Confidence 4332 46899999999998888754
No 474
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=94.63 E-value=0.97 Score=45.19 Aligned_cols=146 Identities=18% Similarity=0.215 Sum_probs=94.5
Q ss_pred CCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEE----ccHHHHHHhhcccCcccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHI----TDGIKFVREMKSSSATDE 603 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i----~Da~~~l~~~~~~~~~~~ 603 (759)
+..+||.+|..-|+......+.. |+..|.+||| .++-- -+...++. .|-.-+.+=..
T Consensus 69 p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDl---------lh~~p--~~Ga~~i~~~dvtdp~~~~ki~e------- 130 (232)
T KOG4589|consen 69 PEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDL---------LHIEP--PEGATIIQGNDVTDPETYRKIFE------- 130 (232)
T ss_pred CCCEEEEccCCCChHHHHHHHhhCCCceEEEEee---------eeccC--CCCcccccccccCCHHHHHHHHH-------
Confidence 35789999999999998887766 8889999998 33311 12233333 34443332221
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCC----hHHHHHHHHHccCcCcEEEEEecC
Q 004354 604 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFV----EGSFLLTVKDALSEQGLFIVNLVS 679 (759)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~----~~~fl~~~~~~L~~~Gilv~N~~~ 679 (759)
...+.+.|+|+.|...... |+.- -.+.. -.+.|......|.|+|.|++-+|.
T Consensus 131 ---------------------~lp~r~VdvVlSDMapnaT--Gvr~-~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~ 186 (232)
T KOG4589|consen 131 ---------------------ALPNRPVDVVLSDMAPNAT--GVRI-RDHYRSIELCDSALLFALTLLIPNGSFVCKLWD 186 (232)
T ss_pred ---------------------hCCCCcccEEEeccCCCCc--Ccch-hhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEec
Confidence 0124789999999866532 2210 11111 122444445668899999999998
Q ss_pred CChhHHHHHHHHHHHhcCceEEEeec----CCccEEEEEecCC
Q 004354 680 RSQATKDMVISRMKMVFNHLFCLQLE----EDVNLVLFGLSSE 718 (759)
Q Consensus 680 ~~~~~~~~v~~~l~~vF~~v~~~~~~----~~~N~Vl~a~~~~ 718 (759)
.++. ..+..+|+++|..|-.++.. +.....++|.+-.
T Consensus 187 g~e~--~~l~r~l~~~f~~Vk~vKP~Asr~eS~E~y~v~~~~k 227 (232)
T KOG4589|consen 187 GSEE--ALLQRRLQAVFTNVKKVKPDASRDESAETYLVCLNFK 227 (232)
T ss_pred CCch--HHHHHHHHHHhhhcEeeCCccccccccceeeeeeecc
Confidence 7665 34678999999999988753 4455677777654
No 475
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=94.61 E-value=0.26 Score=54.14 Aligned_cols=120 Identities=11% Similarity=0.158 Sum_probs=87.1
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCC-CCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ-DKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~-~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
....||..=.|.|-.+.-+...- ..+|.++||||.-++..++..-+.. .+++..+.||+.++..+.
T Consensus 188 ~GE~V~DmFAGVGpfsi~~Ak~g-~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~------------ 254 (341)
T COG2520 188 EGETVLDMFAGVGPFSIPIAKKG-RPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPEL------------ 254 (341)
T ss_pred CCCEEEEccCCcccchhhhhhcC-CceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhcc------------
Confidence 35689998888885555454442 2359999999999999999986642 456999999999997663
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChhHHHH
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDM 687 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~~~~~ 687 (759)
..+|-||+-... .+.+|+..+.++|+++|++-+-...++....+.
T Consensus 255 ---------------------~~aDrIim~~p~--------------~a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~~~ 299 (341)
T COG2520 255 ---------------------GVADRIIMGLPK--------------SAHEFLPLALELLKDGGIIHYYEFVPEDDIEER 299 (341)
T ss_pred ---------------------ccCCEEEeCCCC--------------cchhhHHHHHHHhhcCcEEEEEeccchhhcccc
Confidence 358999982211 347899999999999999988777766554333
Q ss_pred HHHHHHHhc
Q 004354 688 VISRMKMVF 696 (759)
Q Consensus 688 v~~~l~~vF 696 (759)
....+....
T Consensus 300 ~~~~i~~~~ 308 (341)
T COG2520 300 PEKRIKSAA 308 (341)
T ss_pred hHHHHHHHH
Confidence 344444444
No 476
>KOG2730 consensus Methylase [General function prediction only]
Probab=94.54 E-value=0.1 Score=53.25 Aligned_cols=54 Identities=17% Similarity=0.282 Sum_probs=40.8
Q ss_pred cccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhc
Q 004354 537 GLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMK 596 (759)
Q Consensus 537 GlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~ 596 (759)
|+|||++- |..++ ..|.+|||||.-+..|+... |.+ +|+.++.||-++......
T Consensus 104 g~gGntiq-fa~~~---~~VisIdiDPikIa~AkhNaeiYGI~--~rItFI~GD~ld~~~~lq 160 (263)
T KOG2730|consen 104 GVGGNTIQ-FALQG---PYVIAIDIDPVKIACARHNAEVYGVP--DRITFICGDFLDLASKLK 160 (263)
T ss_pred cCCchHHH-HHHhC---CeEEEEeccHHHHHHHhccceeecCC--ceeEEEechHHHHHHHHh
Confidence 44544443 43333 37999999999999999886 763 499999999888877664
No 477
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=94.54 E-value=0.35 Score=50.38 Aligned_cols=101 Identities=18% Similarity=0.087 Sum_probs=59.9
Q ss_pred CCCeEEEECCCcchhHHHHH-HhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC-----CcccEEEeCCCC
Q 004354 68 PPPQILVPGCGNSRLSEHLY-DAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-----GGLDALMEPELG 141 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~-~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~-----gtfD~Ii~~~~~ 141 (759)
.+.+||-+|=+.-. +..++ ....++|+.+||++..++...+.+.+.+.+++..+.|+.+.- +.||++++.+..
T Consensus 44 ~gk~il~lGDDDLt-SlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPPy 122 (243)
T PF01861_consen 44 EGKRILFLGDDDLT-SLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPPY 122 (243)
T ss_dssp TT-EEEEES-TT-H-HHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE---S
T ss_pred cCCEEEEEcCCcHH-HHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCCC
Confidence 46799999854433 22232 234568999999999999988877666666999999998753 999999997643
Q ss_pred h-hHHHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 142 H-KLGNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 142 ~-~~~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
- .-..-++......||..|......++.
T Consensus 123 T~~G~~LFlsRgi~~Lk~~g~~gy~~~~~ 151 (243)
T PF01861_consen 123 TPEGLKLFLSRGIEALKGEGCAGYFGFTH 151 (243)
T ss_dssp SHHHHHHHHHHHHHTB-STT-EEEEEE-T
T ss_pred CHHHHHHHHHHHHHHhCCCCceEEEEEec
Confidence 2 337888999999999767545555543
No 478
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=94.50 E-value=0.088 Score=49.98 Aligned_cols=55 Identities=9% Similarity=0.039 Sum_probs=45.1
Q ss_pred EEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEcc
Q 004354 533 AVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITD 587 (759)
Q Consensus 533 vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~D 587 (759)
++.||.|.|..+.++....|..++.+||.+|.+++.+++.+....-++++++...
T Consensus 2 vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~a 56 (143)
T TIGR01444 2 VIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAA 56 (143)
T ss_pred EEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEee
Confidence 7899999999999999888888999999999999999998743222347776643
No 479
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=94.44 E-value=0.12 Score=52.78 Aligned_cols=100 Identities=10% Similarity=0.007 Sum_probs=54.7
Q ss_pred CCCeEEEECCCcchhHHHHHHh-----CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC-----------Cc
Q 004354 68 PPPQILVPGCGNSRLSEHLYDA-----GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-----------GG 131 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~-----G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~-----------gt 131 (759)
++..|+|+|.-.|.-+..+++. +-.+|+|||+................++++++++|..+.. +.
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~ 111 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPH 111 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----S
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCC
Confidence 5679999999998888766542 2357999999543322111111122478999999998765 22
Q ss_pred ccEEEeCCCC-hhHHHHHHHHHHHhcccCcEEEEEEc
Q 004354 132 LDALMEPELG-HKLGNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 132 fD~Ii~~~~~-~~~~~~~l~ei~rvLkpGG~liiit~ 167 (759)
..+|+..... +....+.|+....++++|+++++...
T Consensus 112 ~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt 148 (206)
T PF04989_consen 112 PVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVEDT 148 (206)
T ss_dssp SEEEEESS----SSHHHHHHHHHHT--TT-EEEETSH
T ss_pred ceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEEec
Confidence 3344443321 12267778889999999999988764
No 480
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.42 E-value=0.069 Score=51.86 Aligned_cols=112 Identities=12% Similarity=0.103 Sum_probs=70.7
Q ss_pred CCCeEEEECCCcchhHHHHHHh--CCCeEEEEeCCHHHHHHHHHHhccC----CCCcEEEEeecccCC-----CcccEEE
Q 004354 68 PPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRD----RSDMRWRVMDMTSMQ-----GGLDALM 136 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~--G~~~VtgIDiS~~~I~~a~~r~~~~----~~~i~f~~~D~~~~~-----gtfD~Ii 136 (759)
.+.+|||+|.|--.++-.|... ....|...|-++..++..++..... ...+..+..+..... .+||.|+
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl 108 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL 108 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence 4568999999965555444332 2346999999999998876654221 111111111111111 6999999
Q ss_pred eCCC--ChhHHHHHHHHHHHhcccCcEEEEEEcCchhhhhhhccc
Q 004354 137 EPEL--GHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPK 179 (759)
Q Consensus 137 ~~~~--~~~~~~~~l~ei~rvLkpGG~liiit~~~~~~~~~l~~~ 179 (759)
|.+- ..+....+.+.|++.|+|.|..++.+......+..+...
T Consensus 109 aADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~de 153 (201)
T KOG3201|consen 109 AADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRRGQSLQKFLDE 153 (201)
T ss_pred eccchhHHHHHHHHHHHHHHHhCcccceeEecCcccchHHHHHHH
Confidence 9762 223378899999999999999887775544444444443
No 481
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=94.13 E-value=0.2 Score=55.70 Aligned_cols=129 Identities=13% Similarity=0.163 Sum_probs=77.6
Q ss_pred CeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccccc
Q 004354 531 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGN 610 (759)
Q Consensus 531 ~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~ 610 (759)
.++|.+=+|.|.++..|.... .+|.+||+++..++.|++...+..-++++++.+|+-++...........-+..
T Consensus 198 ~~vlDlycG~G~fsl~la~~~--~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~~r~~~~~~~---- 271 (352)
T PF05958_consen 198 GDVLDLYCGVGTFSLPLAKKA--KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAKAREFNRLKG---- 271 (352)
T ss_dssp TEEEEES-TTTCCHHHHHCCS--SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCCS-GGTTGGG----
T ss_pred CcEEEEeecCCHHHHHHHhhC--CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHhhHHHHhhhh----
Confidence 379999999999988898775 58999999999999999998554456799999998877554331000000000
Q ss_pred ccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChhHHHHHHH
Q 004354 611 EITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVIS 690 (759)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~ 690 (759)
......++|+||+|.-- .| ++..+++.+.+ +. =++-+.|....+.+. +.
T Consensus 272 -------------~~~~~~~~d~vilDPPR----~G--------~~~~~~~~~~~-~~----~ivYvSCnP~tlaRD-l~ 320 (352)
T PF05958_consen 272 -------------IDLKSFKFDAVILDPPR----AG--------LDEKVIELIKK-LK----RIVYVSCNPATLARD-LK 320 (352)
T ss_dssp -------------S-GGCTTESEEEE---T----T---------SCHHHHHHHHH-SS----EEEEEES-HHHHHHH-HH
T ss_pred -------------hhhhhcCCCEEEEcCCC----CC--------chHHHHHHHhc-CC----eEEEEECCHHHHHHH-HH
Confidence 00112469999997522 23 34677777764 32 255666777777666 44
Q ss_pred HHHHhc
Q 004354 691 RMKMVF 696 (759)
Q Consensus 691 ~l~~vF 696 (759)
.|.+-|
T Consensus 321 ~L~~~y 326 (352)
T PF05958_consen 321 ILKEGY 326 (352)
T ss_dssp HHHCCE
T ss_pred HHhhcC
Confidence 565543
No 482
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=93.93 E-value=0.13 Score=52.41 Aligned_cols=108 Identities=17% Similarity=0.152 Sum_probs=53.3
Q ss_pred CCCCeEEEEcccccHHHHHHH---HhC-CCCcEEEEEcCHHH-HHHHHhhcCCCCCCCeEEEEccHHH--HHHhhcccCc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLH---ECM-PFVGIEAVELDLTM-LNLAEDYFGFTQDKSLKVHITDGIK--FVREMKSSSA 600 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~---~~~-p~~~i~~VEiDp~v-~~vA~~~Fgl~~~~rl~v~i~Da~~--~l~~~~~~~~ 600 (759)
-+|..|+.+|.--|+-..|.+ +.+ +..+|.+||||..- -..|.+.-.+ .+|++++.||..+ .+.....
T Consensus 31 ~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~--~~rI~~i~Gds~d~~~~~~v~~--- 105 (206)
T PF04989_consen 31 LKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPM--SPRITFIQGDSIDPEIVDQVRE--- 105 (206)
T ss_dssp H--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG------TTEEEEES-SSSTHHHHTSGS---
T ss_pred hCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccc--cCceEEEECCCCCHHHHHHHHH---
Confidence 367899999988664444333 233 66799999997533 3334444333 5899999999654 2222210
Q ss_pred ccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEE
Q 004354 601 TDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 675 (759)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~ 675 (759)
........+||.|.+-.-. + ...-|+.....+++|+.+||
T Consensus 106 ------------------------~~~~~~~vlVilDs~H~~~---------h--vl~eL~~y~plv~~G~Y~IV 145 (206)
T PF04989_consen 106 ------------------------LASPPHPVLVILDSSHTHE---------H--VLAELEAYAPLVSPGSYLIV 145 (206)
T ss_dssp ------------------------S----SSEEEEESS----S---------S--HHHHHHHHHHT--TT-EEEE
T ss_pred ------------------------hhccCCceEEEECCCccHH---------H--HHHHHHHhCccCCCCCEEEE
Confidence 1113456799997754321 1 14456778999999999884
No 483
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=93.83 E-value=0.15 Score=53.06 Aligned_cols=39 Identities=13% Similarity=0.063 Sum_probs=33.3
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHH
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNL 568 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~v 568 (759)
....+|.+|.|+|.++.+|.+. +..+|++||+++.++..
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAE 113 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHH
Confidence 4468999999999999999987 44589999999977765
No 484
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=93.81 E-value=0.47 Score=48.40 Aligned_cols=113 Identities=12% Similarity=0.013 Sum_probs=66.9
Q ss_pred HHHHhhcCCCCCCCCeEEEECCCcchhHHHHHH---hCCCeEEEEeCCHHHHHHHHHHhccC------------------
Q 004354 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYD---AGFHGITNVDFSKVVISDMLRRNVRD------------------ 114 (759)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~---~G~~~VtgIDiS~~~I~~a~~r~~~~------------------ 114 (759)
++...+.......+-++-|..||.|.+.--+.- ...++|+|.|+++.+++.|++++.-.
T Consensus 39 i~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~ 118 (246)
T PF11599_consen 39 IFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQ 118 (246)
T ss_dssp HHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHH
Confidence 344444443334567899999999998866532 23467999999999999998764200
Q ss_pred -------------------------CCCcEEEEeecccCC--------CcccEEEeCC----CChh-------HHHHHHH
Q 004354 115 -------------------------RSDMRWRVMDMTSMQ--------GGLDALMEPE----LGHK-------LGNQYLS 150 (759)
Q Consensus 115 -------------------------~~~i~f~~~D~~~~~--------gtfD~Ii~~~----~~~~-------~~~~~l~ 150 (759)
.......+.|+++.. ..-|+|+..- ...| -...||.
T Consensus 119 ~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~ 198 (246)
T PF11599_consen 119 YGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLN 198 (246)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHH
T ss_pred cCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHH
Confidence 023567888988854 4469999731 1112 2889999
Q ss_pred HHHHhcccCcEEEEEEcCc
Q 004354 151 EVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 151 ei~rvLkpGG~liiit~~~ 169 (759)
.++.+| |+.-+++++-.+
T Consensus 199 ~l~~vL-p~~sVV~v~~k~ 216 (246)
T PF11599_consen 199 SLAPVL-PERSVVAVSDKG 216 (246)
T ss_dssp HHHCCS--TT-EEEEEESS
T ss_pred HHHhhC-CCCcEEEEecCC
Confidence 999999 555555555443
No 485
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=93.70 E-value=0.31 Score=52.24 Aligned_cols=64 Identities=14% Similarity=0.122 Sum_probs=51.8
Q ss_pred CeEEEEcccccHHHHHHHHhCCCC-cEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhh
Q 004354 531 VKAVVIGLGAGLLPMFLHECMPFV-GIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREM 595 (759)
Q Consensus 531 ~~vLviGlG~G~l~~~L~~~~p~~-~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~ 595 (759)
.-.+..=+|+|+-+..+...+|.. ++.++|-||..++.|++.+- +.++|+.++++.-.++-...
T Consensus 25 giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~-~~~~r~~~v~~~F~~l~~~l 89 (314)
T COG0275 25 GIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLK-EFDGRVTLVHGNFANLAEAL 89 (314)
T ss_pred cEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhh-ccCCcEEEEeCcHHHHHHHH
Confidence 567888899999999999888865 59999999999999999872 22689999998766554443
No 486
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=93.68 E-value=1.1 Score=46.03 Aligned_cols=99 Identities=23% Similarity=0.347 Sum_probs=70.7
Q ss_pred EEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCcccccccccc
Q 004354 533 AVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 609 (759)
Q Consensus 533 vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~ 609 (759)
|..||.-=|.||.+|.......++.++|+.+.-++.|++.. |+ .+++.+..+||++.+...
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l--~~~i~~rlgdGL~~l~~~-------------- 64 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGL--EDRIEVRLGDGLEVLKPG-------------- 64 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT---TTTEEEEE-SGGGG--GG--------------
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC--cccEEEEECCcccccCCC--------------
Confidence 57899999999999999976679999999999999999876 65 579999999999987552
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEec
Q 004354 610 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 678 (759)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~ 678 (759)
...|.|++ .|| ..-+-.++|+.....+...--||+.-.
T Consensus 65 -------------------e~~d~ivI--------AGM----GG~lI~~ILe~~~~~~~~~~~lILqP~ 102 (205)
T PF04816_consen 65 -------------------EDVDTIVI--------AGM----GGELIIEILEAGPEKLSSAKRLILQPN 102 (205)
T ss_dssp -------------------G---EEEE--------EEE-----HHHHHHHHHHTGGGGTT--EEEEEES
T ss_pred -------------------CCCCEEEE--------ecC----CHHHHHHHHHhhHHHhccCCeEEEeCC
Confidence 23688888 233 122446788888777776667887643
No 487
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=93.63 E-value=0.25 Score=52.94 Aligned_cols=64 Identities=16% Similarity=0.098 Sum_probs=52.0
Q ss_pred eEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC-----CcccEEEeCC
Q 004354 71 QILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-----GGLDALMEPE 139 (759)
Q Consensus 71 ~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~-----gtfD~Ii~~~ 139 (759)
+++|+-||.|.++..+...|++.+.++|+++.+++..+.++. .. .++.|+.+.. +.+|+++...
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~----~~-~~~~Di~~~~~~~~~~~~D~l~~gp 70 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFP----NK-LIEGDITKIDEKDFIPDIDLLTGGF 70 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCC----CC-CccCccccCchhhcCCCCCEEEeCC
Confidence 699999999999999999999889999999999987766652 22 5667776654 5689999765
No 488
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=93.61 E-value=0.18 Score=52.69 Aligned_cols=125 Identities=15% Similarity=0.102 Sum_probs=74.9
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCC-CeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC--CcccEEEeCCCChh
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--GGLDALMEPELGHK 143 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~-~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~--gtfD~Ii~~~~~~~ 143 (759)
.+..+|+|||||.=-++........ ..|+|+||+..+++...+-....+++.++...|+...+ ...|+.+..-..+-
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~~~~DlaLllK~lp~ 183 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPPKEPADLALLLKTLPC 183 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHTTSEESEEEEET-HHH
T ss_pred CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCCCCCcchhhHHHHHHH
Confidence 3478999999999999887665421 36999999999999887776667788899999987664 78999988543322
Q ss_pred H---HHHHHHHHHHhcccCcEEEEEEcCch----------hhhhhhcccc--CCCceEEEEEeCC
Q 004354 144 L---GNQYLSEVKRLLKSGGKFVCLTLAES----------HVLGLLFPKF--RFGWKMSVHAIPQ 193 (759)
Q Consensus 144 ~---~~~~l~ei~rvLkpGG~liiit~~~~----------~~~~~l~~~~--~~~w~v~~~~~~~ 193 (759)
. ....--++... -+..+++++|... ......++.. ..+|.++-.++++
T Consensus 184 le~q~~g~g~~ll~~--~~~~~~vVSfPtrSL~gR~~gm~~~y~~~fe~~~~~~~~~~~~~~~~~ 246 (251)
T PF07091_consen 184 LERQRRGAGLELLDA--LRSPHVVVSFPTRSLGGRNKGMEQTYSAWFEALAAERGWIVDRLTFGN 246 (251)
T ss_dssp HHHHSTTHHHHHHHH--SCESEEEEEEES-------TTHHHCHHHHHHHHCCTTCEEEEEEEETT
T ss_pred HHHHhcchHHHHHHH--hCCCeEEEeccccccccCccccccCHHHHHHHhcccCCceeeeeeccc
Confidence 2 11111111111 2455677776321 1112233332 3378877777765
No 489
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=93.58 E-value=1.5 Score=51.00 Aligned_cols=181 Identities=14% Similarity=0.126 Sum_probs=109.3
Q ss_pred HHHHHHHHhhcCCCCccccccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh---CC--CeEEEEeCCHH
Q 004354 28 KENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA---GF--HGITNVDFSKV 102 (759)
Q Consensus 28 ~~yWd~~y~~~~~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~---G~--~~VtgIDiS~~ 102 (759)
.+|--+.|.........|.|.+ .....++.+.+.. .+..+|.|..||+|.+.....+. .. ..++|.++++.
T Consensus 150 yE~ll~~fa~~~~k~~GEfyTP-~~v~~liv~~l~~---~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~ 225 (489)
T COG0286 150 YEYLLRKFAEAEGKEAGEFYTP-REVSELIVELLDP---EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDT 225 (489)
T ss_pred HHHHHHHHHHhcCCCCCccCCh-HHHHHHHHHHcCC---CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHH
Confidence 3455556665531222455554 4566667776653 46679999999999988766543 11 24999999999
Q ss_pred HHHHHHHHhccCCC--CcEEEEeecccCC--------CcccEEEeCCCC--------------------hh------HH-
Q 004354 103 VISDMLRRNVRDRS--DMRWRVMDMTSMQ--------GGLDALMEPELG--------------------HK------LG- 145 (759)
Q Consensus 103 ~I~~a~~r~~~~~~--~i~f~~~D~~~~~--------gtfD~Ii~~~~~--------------------~~------~~- 145 (759)
....++-+.--++. .+....+|-..-+ +.||.|++++.. .. ..
T Consensus 226 t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (489)
T COG0286 226 TYRLAKMNLILHGIEGDANIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSAD 305 (489)
T ss_pred HHHHHHHHHHHhCCCccccccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchH
Confidence 98888776533322 2455555543332 569999985410 00 03
Q ss_pred HHHHHHHHHhcccCcEEEEEEcCc--------hhhhhhhccccCCCceEEEEEeCCCCCCCCCceEEEEEEEeCCCcc
Q 004354 146 NQYLSEVKRLLKSGGKFVCLTLAE--------SHVLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVADKENSSV 215 (759)
Q Consensus 146 ~~~l~ei~rvLkpGG~liiit~~~--------~~~~~~l~~~~~~~w~v~~~~~~~~~~~~~~~~~f~~v~~K~~~~~ 215 (759)
..++..+...|+|||+..++.... ..+++.+++.. ..-.+...+...--..+.+..+.+++|.++..
T Consensus 306 ~af~~h~~~~l~~~g~aaivl~~gvlfr~~~e~~IR~~l~~~~---~~~~ii~lp~~lF~~t~i~~~Il~l~k~k~~~ 380 (489)
T COG0286 306 LAFLQHILYKLKPGGRAAIVLPDGVLFRGGAEKDIRKDLLEDN---LLEAIIGLPTGLFYNTGIPTNILFLTKNKPAE 380 (489)
T ss_pred HHHHHHHHHhcCCCceEEEEecCCcCcCCCchHHHHHHHHhcc---ceEEeeeCChhhcccCCCCeEEEEeecCCCCC
Confidence 788999999999999766664432 23444444411 11112222221112457889999999987654
No 490
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=93.58 E-value=0.11 Score=53.68 Aligned_cols=112 Identities=16% Similarity=0.242 Sum_probs=71.8
Q ss_pred CeEEEEcccccHHHHHHHHhCCC--CcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004354 531 VKAVVIGLGAGLLPMFLHECMPF--VGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 608 (759)
Q Consensus 531 ~~vLviGlG~G~l~~~L~~~~p~--~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~ 608 (759)
.++|.||.|.|.+..-|.+-.|+ ..|.++|-.|..+++-+++-++.+ .++...+-|.-.= ...
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e-~~~~afv~Dlt~~--~~~------------ 137 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE-SRVEAFVWDLTSP--SLK------------ 137 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch-hhhcccceeccch--hcc------------
Confidence 38999999999766656666666 899999999999999999988744 3444433331110 000
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCC
Q 004354 609 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 680 (759)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~ 680 (759)
...+.+.+|+|.+ ++-- +++ +|... ...+.++.+.|+|||.+++==.++
T Consensus 138 ---------------~~~~~~svD~it~-IFvL---SAi--~pek~--~~a~~nl~~llKPGG~llfrDYg~ 186 (264)
T KOG2361|consen 138 ---------------EPPEEGSVDIITL-IFVL---SAI--HPEKM--QSVIKNLRTLLKPGGSLLFRDYGR 186 (264)
T ss_pred ---------------CCCCcCccceEEE-EEEE---ecc--ChHHH--HHHHHHHHHHhCCCcEEEEeeccc
Confidence 0112356777664 1110 111 12222 568999999999999998654444
No 491
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=93.45 E-value=0.5 Score=52.61 Aligned_cols=105 Identities=17% Similarity=0.133 Sum_probs=0.0
Q ss_pred CCCCCCCeEEEECCCcchhHHHHHHh--CCCeEEEEeCCHHHHHHHHHHhcc-CCCCcEEEEeecccCC-----CcccEE
Q 004354 64 PTSSPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVR-DRSDMRWRVMDMTSMQ-----GGLDAL 135 (759)
Q Consensus 64 ~~~~~~~~ILDlGCG~G~ls~~L~~~--G~~~VtgIDiS~~~I~~a~~r~~~-~~~~i~f~~~D~~~~~-----gtfD~I 135 (759)
+.+.++.+|||..+-.|.=+.+++.. +-..|++.|.+..-+...++++.. ...+......|...++ ++||-|
T Consensus 237 L~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~~fDRV 316 (460)
T KOG1122|consen 237 LDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPGSFDRV 316 (460)
T ss_pred cCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCccccee
Q ss_pred EeCC------------------------CChhHHHHHHHHHHHhcccCcEEEEEEcC
Q 004354 136 MEPE------------------------LGHKLGNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 136 i~~~------------------------~~~~~~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
+... ...+...++|..+..++++||+++..|.+
T Consensus 317 LLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCS 373 (460)
T KOG1122|consen 317 LLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCS 373 (460)
T ss_pred eecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeee
No 492
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=93.38 E-value=0.19 Score=51.16 Aligned_cols=108 Identities=12% Similarity=0.187 Sum_probs=67.9
Q ss_pred eEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhh---cCCCC-CCCeEEEEccH-HHHHHhhcccCccccccc
Q 004354 532 KAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDY---FGFTQ-DKSLKVHITDG-IKFVREMKSSSATDEMSV 606 (759)
Q Consensus 532 ~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~---Fgl~~-~~rl~v~i~Da-~~~l~~~~~~~~~~~~~~ 606 (759)
+||.||.|+|--+.+...++|.....--|+|+....--+.| .+++. -+.+.+=+.+. ..+...
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~------------ 95 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELP------------ 95 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccc------------
Confidence 69999999999999999999999999999999986444444 34421 11222211111 000000
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEE
Q 004354 607 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 676 (759)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N 676 (759)
.......||+|+. -+.-... |.. ....+++.+.+.|++||+|++-
T Consensus 96 -----------------~~~~~~~~D~i~~--~N~lHI~-----p~~-~~~~lf~~a~~~L~~gG~L~~Y 140 (204)
T PF06080_consen 96 -----------------APLSPESFDAIFC--INMLHIS-----PWS-AVEGLFAGAARLLKPGGLLFLY 140 (204)
T ss_pred -----------------cccCCCCcceeee--hhHHHhc-----CHH-HHHHHHHHHHHhCCCCCEEEEe
Confidence 0112468999987 1111110 111 2477999999999999999954
No 493
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=93.31 E-value=0.64 Score=49.83 Aligned_cols=47 Identities=21% Similarity=0.197 Sum_probs=41.1
Q ss_pred cCCCCeEEEEcccccHHHHHHHHhCCC-CcEEEEEcCHHHHHHHHhhc
Q 004354 527 VGKSVKAVVIGLGAGLLPMFLHECMPF-VGIEAVELDLTMLNLAEDYF 573 (759)
Q Consensus 527 ~~~~~~vLviGlG~G~l~~~L~~~~p~-~~i~~VEiDp~v~~vA~~~F 573 (759)
.-.|.+||.+|.|.|+.+..+...++. .++++||.++.++++|+.-+
T Consensus 31 ~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~ 78 (274)
T PF09243_consen 31 DFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLL 78 (274)
T ss_pred CCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHH
Confidence 347789999999999988888888874 38999999999999998876
No 494
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=93.26 E-value=0.11 Score=56.29 Aligned_cols=105 Identities=17% Similarity=0.113 Sum_probs=64.7
Q ss_pred CCCeEEEECCCcchhHHHHHHh--CCCeEEEEeCCHHHHHHHHHHhccCCC-CcEEEE----eecccCC--CcccEEEeC
Q 004354 68 PPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDRS-DMRWRV----MDMTSMQ--GGLDALMEP 138 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~--G~~~VtgIDiS~~~I~~a~~r~~~~~~-~i~f~~----~D~~~~~--gtfD~Ii~~ 138 (759)
...+|||+|.|.|.-...+.+. ....++-++.|+..-+..-.....-.+ ...|.. .|-..++ ..|++++..
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~ 192 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIVL 192 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhhh
Confidence 4567999999999988777654 124577788887543322221111111 122333 3333333 567777764
Q ss_pred CC-C----hhHHHHHHHHHHHhcccCcEEEEEEcCchhh
Q 004354 139 EL-G----HKLGNQYLSEVKRLLKSGGKFVCLTLAESHV 172 (759)
Q Consensus 139 ~~-~----~~~~~~~l~ei~rvLkpGG~liiit~~~~~~ 172 (759)
+. . +..+..+++.+..++.|||.++++.-+.+.-
T Consensus 193 ~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~G 231 (484)
T COG5459 193 DELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPAG 231 (484)
T ss_pred hhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCchh
Confidence 41 1 1225669999999999999999999887743
No 495
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=93.11 E-value=0.58 Score=51.33 Aligned_cols=96 Identities=20% Similarity=0.152 Sum_probs=71.9
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
....++|.||.+.|+.+..|.+. ..+|++||..|.--. +..+++++.+.+|+..|...
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l~~~-------L~~~~~V~h~~~d~fr~~p~------------- 267 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPMAQS-------LMDTGQVEHLRADGFKFRPP------------- 267 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhcCHh-------hhCCCCEEEEeccCcccCCC-------------
Confidence 34578999999999999999987 359999997663322 23589999999999988432
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcC--cEEEEEecC
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQ--GLFIVNLVS 679 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~--Gilv~N~~~ 679 (759)
...+|+|++|+-.. | ...++.+.+-|..| .-+|+|+--
T Consensus 268 --------------------~~~vDwvVcDmve~---------P-----~rva~lm~~Wl~~g~cr~aIfnLKl 307 (357)
T PRK11760 268 --------------------RKNVDWLVCDMVEK---------P-----ARVAELMAQWLVNGWCREAIFNLKL 307 (357)
T ss_pred --------------------CCCCCEEEEecccC---------H-----HHHHHHHHHHHhcCcccEEEEEEEc
Confidence 25799999998543 2 35667777777655 478888843
No 496
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=92.84 E-value=0.16 Score=46.24 Aligned_cols=32 Identities=25% Similarity=0.299 Sum_probs=27.5
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCCeEEEEeC
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDF 99 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDi 99 (759)
.+.....|||||||.+..-|...|+. =.|+|.
T Consensus 57 ~~~~~FVDlGCGNGLLV~IL~~EGy~-G~GiD~ 88 (112)
T PF07757_consen 57 QKFQGFVDLGCGNGLLVYILNSEGYP-GWGIDA 88 (112)
T ss_pred CCCCceEEccCCchHHHHHHHhCCCC-cccccc
Confidence 35668999999999999999999986 678885
No 497
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=92.80 E-value=0.46 Score=53.21 Aligned_cols=102 Identities=18% Similarity=0.282 Sum_probs=72.4
Q ss_pred CCCeEEEEcccccHHH-HHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004354 529 KSVKAVVIGLGAGLLP-MFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 604 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~-~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~ 604 (759)
.+.++|..=.|.|.=. +++.+.-...+|++-|+||..+++.++.. ++. ++++++...||...+...
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~-~~~~~v~~~DAn~ll~~~--------- 118 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLE-DERIEVSNMDANVLLYSR--------- 118 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-S-GCCEEEEES-HHHHHCHS---------
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhcccc-CceEEEehhhHHHHhhhc---------
Confidence 3467888777788543 56666433459999999999999999997 442 348999999999998632
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 677 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~ 677 (759)
..+||+|=+|.|.+ | ..||..+-+.++.||+|.+-.
T Consensus 119 -----------------------~~~fD~IDlDPfGS--------p------~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 119 -----------------------QERFDVIDLDPFGS--------P------APFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp -----------------------TT-EEEEEE--SS----------------HHHHHHHHHHEEEEEEEEEEE
T ss_pred -----------------------cccCCEEEeCCCCC--------c------cHhHHHHHHHhhcCCEEEEec
Confidence 36899999998876 2 569999999999999999764
No 498
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=92.78 E-value=0.17 Score=54.93 Aligned_cols=119 Identities=16% Similarity=0.169 Sum_probs=69.9
Q ss_pred CCCCeEEEEcccccHHHHHHHHh-------CCCCcEEEEEcCHHHHHHHHhhcCCC--CCCCeEEEEccHHHHHHhhccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHEC-------MPFVGIEAVELDLTMLNLAEDYFGFT--QDKSLKVHITDGIKFVREMKSS 598 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~-------~p~~~i~~VEiDp~v~~vA~~~Fgl~--~~~rl~v~i~Da~~~l~~~~~~ 598 (759)
....+|+.-.+|+|.+...+... .+...+.++|+|+..+.+|+-.+-+. ......+..+|.+.--...
T Consensus 45 ~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~--- 121 (311)
T PF02384_consen 45 KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFI--- 121 (311)
T ss_dssp -TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCT---
T ss_pred cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccc---
Confidence 34457999999999876655553 36679999999999999998765222 1233568888854321110
Q ss_pred CcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCC-CCC----------CCCCCCcCCCCCChHHHHHHHHHcc
Q 004354 599 SATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVD-SPD----------SSSGMTCPAADFVEGSFLLTVKDAL 667 (759)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~-s~d----------~~~g~scPp~~f~~~~fl~~~~~~L 667 (759)
...+||+|+.... ... ..-....++..-.+..|++.+.+.|
T Consensus 122 ----------------------------~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~L 173 (311)
T PF02384_consen 122 ----------------------------KNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLL 173 (311)
T ss_dssp ----------------------------ST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTE
T ss_pred ----------------------------cccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhc
Confidence 1367999998441 111 0000001122223456999999999
Q ss_pred CcCcEEEEEe
Q 004354 668 SEQGLFIVNL 677 (759)
Q Consensus 668 ~~~Gilv~N~ 677 (759)
+++|.+++=+
T Consensus 174 k~~G~~~~Il 183 (311)
T PF02384_consen 174 KPGGRAAIIL 183 (311)
T ss_dssp EEEEEEEEEE
T ss_pred ccccceeEEe
Confidence 9999766544
No 499
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=92.74 E-value=0.58 Score=49.66 Aligned_cols=123 Identities=14% Similarity=0.121 Sum_probs=69.3
Q ss_pred CCCeEEEEcccc---cHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccc
Q 004354 529 KSVKAVVIGLGA---GLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMS 605 (759)
Q Consensus 529 ~~~~vLviGlG~---G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~ 605 (759)
.-...|.||.|. |.+-...+...|..+|..||.||.|+.-|+.-+.-....+..++.+|.++-=.=+.. .....
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~-p~~~~-- 144 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAH-PEVRG-- 144 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCS-HHHHC--
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcC-HHHHh--
Confidence 557899999994 455455666689999999999999999999987532223499999998774222210 00000
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEcC--CCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCCh
Q 004354 606 VVHGNEITSNNTRSCNGNCTASNARVDILIIDV--DSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQ 682 (759)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~--~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~ 682 (759)
.+ .-+...-++++.+ +-.|. =--...+..+++.|.||..|++.-.+.+.
T Consensus 145 ~l------------------D~~rPVavll~~vLh~v~D~----------~dp~~iv~~l~d~lapGS~L~ish~t~d~ 195 (267)
T PF04672_consen 145 LL------------------DFDRPVAVLLVAVLHFVPDD----------DDPAGIVARLRDALAPGSYLAISHATDDG 195 (267)
T ss_dssp C--------------------TTS--EEEECT-GGGS-CG----------CTHHHHHHHHHCCS-TT-EEEEEEEB-TT
T ss_pred cC------------------CCCCCeeeeeeeeeccCCCc----------cCHHHHHHHHHHhCCCCceEEEEecCCCC
Confidence 00 0135677887755 11221 11268999999999999999998877653
No 500
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=92.25 E-value=1.3 Score=45.50 Aligned_cols=61 Identities=15% Similarity=0.083 Sum_probs=40.1
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHh----------hcCCCCCCCeEEEEccHHH
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAED----------YFGFTQDKSLKVHITDGIK 590 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~----------~Fgl~~~~rl~v~i~Da~~ 590 (759)
.....+.||.|.|-+........+..+..+||+.|...++|+. ++|.. ..+++++.+|-++
T Consensus 42 ~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~-~~~v~l~~gdfl~ 112 (205)
T PF08123_consen 42 PDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKR-PGKVELIHGDFLD 112 (205)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB----EEEEECS-TTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcc-cccceeeccCccc
Confidence 3457899999999777666655555579999999999998864 23543 4578889888653
Done!