Query 004356
Match_columns 759
No_of_seqs 381 out of 1857
Neff 5.9
Searched_HMMs 46136
Date Thu Mar 28 22:02:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004356.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004356hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0243 Kinesin-like protein [ 100.0 3E-125 7E-130 1098.3 76.3 748 1-752 146-894 (1041)
2 KOG0245 Kinesin-like protein [ 100.0 5.9E-70 1.3E-74 624.3 20.3 316 2-334 99-427 (1221)
3 KOG4280 Kinesin-like protein [ 100.0 1.5E-69 3.3E-74 609.9 17.6 272 2-283 97-371 (574)
4 KOG0240 Kinesin (SMY1 subfamil 100.0 1.2E-63 2.6E-68 549.2 37.3 260 2-274 94-358 (607)
5 PLN03188 kinesin-12 family pro 100.0 7.8E-62 1.7E-66 572.1 26.1 279 2-290 177-482 (1320)
6 KOG0242 Kinesin-like protein [ 100.0 1.1E-60 2.4E-65 555.8 24.4 267 3-284 99-368 (675)
7 KOG0241 Kinesin-like protein [ 100.0 3.2E-59 6.9E-64 526.5 24.6 268 2-279 105-382 (1714)
8 cd01364 KISc_BimC_Eg5 Kinesin 100.0 2.6E-57 5.6E-62 497.0 25.9 248 2-256 93-352 (352)
9 cd01373 KISc_KLP2_like Kinesin 100.0 1.9E-57 4.2E-62 495.4 24.5 235 2-247 86-337 (337)
10 cd01370 KISc_KIP3_like Kinesin 100.0 1.7E-57 3.6E-62 496.0 23.9 235 2-247 99-338 (338)
11 cd01368 KISc_KIF23_like Kinesi 100.0 3.7E-56 8.1E-61 486.7 24.4 235 2-245 100-345 (345)
12 cd01365 KISc_KIF1A_KIF1B Kines 100.0 1.6E-55 3.6E-60 483.5 25.8 245 2-254 100-356 (356)
13 KOG0244 Kinesin-like protein [ 100.0 5.7E-54 1.2E-58 495.0 37.7 255 15-281 93-350 (913)
14 cd01371 KISc_KIF3 Kinesin moto 100.0 3.7E-54 8E-59 468.9 25.8 237 2-247 93-333 (333)
15 cd01376 KISc_KID_like Kinesin 100.0 5.5E-54 1.2E-58 465.0 23.3 228 2-245 92-319 (319)
16 cd01367 KISc_KIF2_like Kinesin 100.0 5.5E-54 1.2E-58 465.5 22.6 226 2-245 96-322 (322)
17 cd01375 KISc_KIF9_like Kinesin 100.0 1.9E-53 4E-58 463.6 25.4 239 2-245 92-334 (334)
18 cd01374 KISc_CENP_E Kinesin mo 100.0 1.8E-53 4E-58 461.1 24.3 234 2-247 85-321 (321)
19 cd01372 KISc_KIF4 Kinesin moto 100.0 3E-53 6.5E-58 462.9 25.6 240 2-248 85-341 (341)
20 cd01369 KISc_KHC_KIF5 Kinesin 100.0 5.9E-53 1.3E-57 457.9 24.6 233 2-247 88-325 (325)
21 KOG0247 Kinesin-like protein [ 100.0 5E-52 1.1E-56 466.8 26.5 215 37-257 226-446 (809)
22 cd01366 KISc_C_terminal Kinesi 100.0 5.7E-52 1.2E-56 450.7 25.8 238 2-250 89-329 (329)
23 PF00225 Kinesin: Kinesin moto 100.0 9.2E-52 2E-56 449.5 20.0 239 3-247 87-335 (335)
24 smart00129 KISc Kinesin motor, 100.0 4.9E-51 1.1E-55 444.2 25.6 241 2-254 91-335 (335)
25 KOG0239 Kinesin (KAR3 subfamil 100.0 1.4E-50 3.1E-55 469.9 15.8 244 2-256 404-649 (670)
26 cd00106 KISc Kinesin motor dom 100.0 6.2E-49 1.3E-53 426.2 25.5 234 2-245 90-328 (328)
27 COG5059 KIP1 Kinesin-like prot 100.0 3.2E-48 7E-53 447.1 27.2 266 3-289 102-371 (568)
28 KOG0246 Kinesin-like protein [ 100.0 6.1E-47 1.3E-51 415.8 19.6 234 2-252 303-546 (676)
29 cd01363 Motor_domain Myosin an 100.0 1.9E-36 4.1E-41 304.2 13.8 129 98-226 58-186 (186)
30 KOG0243 Kinesin-like protein [ 98.6 0.0043 9.3E-08 75.9 52.9 50 572-621 744-793 (1041)
31 KOG0977 Nuclear envelope prote 97.9 0.075 1.6E-06 61.8 36.9 147 427-598 241-389 (546)
32 KOG4674 Uncharacterized conser 97.9 0.2 4.4E-06 65.0 60.6 333 398-735 768-1135(1822)
33 KOG0161 Myosin class II heavy 97.8 0.32 6.9E-06 64.2 62.7 17 694-710 1430-1446(1930)
34 TIGR00606 rad50 rad50. This fa 97.7 0.44 9.6E-06 61.9 56.4 19 662-680 1133-1151(1311)
35 KOG0977 Nuclear envelope prote 97.7 0.21 4.6E-06 58.2 34.6 95 320-414 93-187 (546)
36 PF10174 Cast: RIM-binding pro 97.5 0.53 1.2E-05 57.5 55.6 156 259-414 236-403 (775)
37 TIGR02168 SMC_prok_B chromosom 97.4 0.74 1.6E-05 58.3 54.0 12 266-277 675-686 (1179)
38 COG1196 Smc Chromosome segrega 97.4 0.83 1.8E-05 58.7 51.8 31 626-656 994-1024(1163)
39 KOG0161 Myosin class II heavy 97.4 1 2.2E-05 59.6 62.7 79 638-716 1315-1396(1930)
40 KOG0250 DNA repair protein RAD 97.4 0.76 1.7E-05 57.0 38.2 36 562-599 509-544 (1074)
41 COG1196 Smc Chromosome segrega 97.3 1.1 2.4E-05 57.6 47.0 18 261-278 193-210 (1163)
42 PF00038 Filament: Intermediat 97.3 0.42 9.1E-06 52.0 38.0 104 262-368 19-131 (312)
43 TIGR02168 SMC_prok_B chromosom 97.2 1.3 2.7E-05 56.2 52.8 17 263-279 679-695 (1179)
44 KOG0971 Microtubule-associated 97.1 1.2 2.6E-05 54.0 42.0 77 341-417 326-410 (1243)
45 PRK02224 chromosome segregatio 97.1 1.5 3.2E-05 54.6 60.1 8 36-43 67-74 (880)
46 TIGR02169 SMC_prok_A chromosom 97.1 1.7 3.8E-05 55.2 50.7 31 627-657 1004-1034(1164)
47 PF07888 CALCOCO1: Calcium bin 97.0 1.1 2.4E-05 52.5 46.8 9 149-157 92-100 (546)
48 TIGR02169 SMC_prok_A chromosom 97.0 1.9 4.1E-05 54.8 51.9 21 86-106 548-568 (1164)
49 PRK11637 AmiB activator; Provi 97.0 0.88 1.9E-05 52.0 29.7 11 266-276 45-55 (428)
50 PRK11637 AmiB activator; Provi 96.9 1.1 2.4E-05 51.2 30.5 17 262-278 48-64 (428)
51 KOG0976 Rho/Rac1-interacting s 96.9 1.5 3.4E-05 52.5 54.3 115 303-417 90-208 (1265)
52 PRK04863 mukB cell division pr 96.9 2.9 6.3E-05 54.9 50.2 36 699-734 844-879 (1486)
53 PF09726 Macoilin: Transmembra 96.9 1.2 2.6E-05 54.0 30.7 24 260-283 417-440 (697)
54 TIGR00606 rad50 rad50. This fa 96.8 2.9 6.4E-05 54.5 60.2 20 660-679 1072-1091(1311)
55 KOG0994 Extracellular matrix g 96.8 2.3 5E-05 53.0 46.6 20 234-253 1177-1196(1758)
56 KOG0250 DNA repair protein RAD 96.8 2.4 5.1E-05 52.9 36.2 27 649-675 773-799 (1074)
57 PF12128 DUF3584: Protein of u 96.8 3.1 6.8E-05 53.8 59.5 38 515-553 751-788 (1201)
58 KOG4674 Uncharacterized conser 96.8 3.6 7.7E-05 54.2 51.8 37 636-672 1179-1215(1822)
59 PF07888 CALCOCO1: Calcium bin 96.7 1.8 4E-05 50.7 46.6 21 474-494 286-306 (546)
60 KOG1029 Endocytic adaptor prot 96.7 1.7 3.7E-05 52.1 29.1 17 15-31 43-59 (1118)
61 KOG1029 Endocytic adaptor prot 96.5 1.1 2.4E-05 53.5 26.1 49 440-488 543-591 (1118)
62 PRK04778 septation ring format 96.4 3.2 7E-05 49.3 41.6 48 507-554 418-466 (569)
63 PF12252 SidE: Dot/Icm substra 96.4 4.2 9.1E-05 50.5 30.1 175 371-568 1106-1285(1439)
64 KOG0995 Centromere-associated 96.4 3 6.6E-05 48.7 46.3 29 358-386 291-319 (581)
65 PF00261 Tropomyosin: Tropomyo 96.3 2 4.3E-05 45.4 27.6 31 298-328 36-66 (237)
66 PF07926 TPR_MLP1_2: TPR/MLP1/ 96.1 1.2 2.6E-05 42.8 19.9 108 303-413 22-129 (132)
67 PF12128 DUF3584: Protein of u 96.1 7.6 0.00016 50.4 52.1 70 419-488 716-788 (1201)
68 PRK04863 mukB cell division pr 95.9 9.5 0.00021 50.3 49.2 51 621-673 588-638 (1486)
69 PF01442 Apolipoprotein: Apoli 95.9 2 4.3E-05 42.4 25.3 22 640-661 150-171 (202)
70 KOG4673 Transcription factor T 95.8 6.2 0.00013 47.0 49.9 97 329-432 405-503 (961)
71 PF15254 CCDC14: Coiled-coil d 95.7 4.4 9.4E-05 48.9 25.5 105 320-430 428-532 (861)
72 KOG0933 Structural maintenance 95.6 9 0.0002 47.6 40.2 35 87-121 548-582 (1174)
73 KOG4643 Uncharacterized coiled 95.4 10 0.00022 47.2 47.5 53 228-287 172-224 (1195)
74 COG4942 Membrane-bound metallo 95.1 7.8 0.00017 44.2 31.8 38 461-498 214-251 (420)
75 COG3883 Uncharacterized protei 95.0 6.3 0.00014 42.4 26.7 44 334-377 60-103 (265)
76 KOG0612 Rho-associated, coiled 95.0 15 0.00032 46.7 43.9 23 259-281 463-485 (1317)
77 PF06785 UPF0242: Uncharacteri 95.0 6.8 0.00015 43.1 22.3 36 529-564 280-321 (401)
78 PF00038 Filament: Intermediat 94.7 8 0.00017 42.0 39.2 31 338-368 52-82 (312)
79 KOG0995 Centromere-associated 94.6 12 0.00026 44.0 41.5 17 581-597 548-564 (581)
80 KOG4673 Transcription factor T 94.6 14 0.0003 44.3 44.0 15 265-279 427-441 (961)
81 KOG0971 Microtubule-associated 94.4 17 0.00038 44.7 41.2 19 265-283 228-246 (1243)
82 COG5185 HEC1 Protein involved 94.4 12 0.00027 42.9 37.2 55 509-563 492-546 (622)
83 KOG0996 Structural maintenance 94.3 21 0.00045 45.3 44.3 25 390-414 399-423 (1293)
84 KOG0612 Rho-associated, coiled 94.2 23 0.00049 45.2 46.8 42 457-498 602-643 (1317)
85 PF05667 DUF812: Protein of un 93.9 19 0.00041 43.2 33.9 37 536-574 538-574 (594)
86 PF14915 CCDC144C: CCDC144C pr 93.6 13 0.00028 40.5 39.1 178 390-567 57-245 (305)
87 PRK09039 hypothetical protein; 93.3 17 0.00036 40.7 24.4 17 221-240 12-28 (343)
88 COG1340 Uncharacterized archae 93.1 16 0.00035 39.9 33.6 30 473-502 202-231 (294)
89 PF06160 EzrA: Septation ring 93.0 25 0.00054 41.9 45.2 24 423-446 214-237 (560)
90 PF09726 Macoilin: Transmembra 92.9 29 0.00064 42.4 31.9 26 531-556 624-649 (697)
91 PRK03918 chromosome segregatio 92.8 33 0.0007 42.8 64.6 15 263-277 171-185 (880)
92 PF15070 GOLGA2L5: Putative go 92.4 31 0.00068 41.6 37.1 51 671-721 404-457 (617)
93 PF10174 Cast: RIM-binding pro 92.1 38 0.00082 42.0 53.6 22 659-680 681-702 (775)
94 PHA02562 46 endonuclease subun 92.1 30 0.00065 40.7 36.8 21 261-281 174-194 (562)
95 TIGR03007 pepcterm_ChnLen poly 91.9 29 0.00064 40.3 27.1 78 213-290 118-197 (498)
96 KOG4360 Uncharacterized coiled 91.8 6.5 0.00014 45.5 16.5 110 264-373 169-280 (596)
97 PF10168 Nup88: Nuclear pore c 91.8 17 0.00036 44.7 21.3 46 315-360 561-606 (717)
98 COG5059 KIP1 Kinesin-like prot 91.4 0.046 1E-06 64.7 -0.8 81 104-191 486-566 (568)
99 COG1340 Uncharacterized archae 91.3 25 0.00055 38.4 36.5 31 473-503 160-190 (294)
100 PF05667 DUF812: Protein of un 91.3 40 0.00086 40.6 36.9 36 577-613 552-587 (594)
101 TIGR03017 EpsF chain length de 91.3 32 0.00068 39.3 24.5 79 213-291 128-208 (444)
102 PF12325 TMF_TATA_bd: TATA ele 91.0 14 0.0003 35.3 15.5 96 259-363 14-112 (120)
103 PF06705 SF-assemblin: SF-asse 90.9 24 0.00052 37.4 33.8 88 578-666 149-243 (247)
104 PF01540 Lipoprotein_7: Adhesi 90.8 26 0.00057 37.6 29.4 121 437-562 176-296 (353)
105 KOG0994 Extracellular matrix g 90.7 59 0.0013 41.5 51.2 59 444-504 1462-1523(1758)
106 PHA02562 46 endonuclease subun 90.7 40 0.00087 39.6 36.3 18 93-110 41-58 (562)
107 TIGR03185 DNA_S_dndD DNA sulfu 90.5 48 0.001 40.2 38.3 10 270-279 184-193 (650)
108 KOG1937 Uncharacterized conser 90.4 38 0.00083 38.9 35.7 44 169-218 159-202 (521)
109 PF14915 CCDC144C: CCDC144C pr 90.2 32 0.00069 37.6 29.0 104 338-441 163-266 (305)
110 PF15619 Lebercilin: Ciliary p 89.9 26 0.00057 36.1 26.1 30 343-372 64-93 (194)
111 PRK04778 septation ring format 89.7 52 0.0011 39.3 51.8 17 450-466 279-295 (569)
112 KOG0980 Actin-binding protein 89.6 62 0.0013 40.1 51.2 101 622-722 794-915 (980)
113 PF15254 CCDC14: Coiled-coil d 89.6 59 0.0013 39.8 22.3 37 675-711 816-857 (861)
114 KOG0963 Transcription factor/C 89.2 56 0.0012 39.0 34.9 36 240-275 45-80 (629)
115 PF04849 HAP1_N: HAP1 N-termin 88.8 42 0.00091 37.0 29.3 139 349-502 162-300 (306)
116 KOG0999 Microtubule-associated 88.7 57 0.0012 38.4 50.3 70 615-684 411-492 (772)
117 PF08317 Spc7: Spc7 kinetochor 88.4 45 0.00098 36.9 20.2 7 183-189 56-62 (325)
118 COG3883 Uncharacterized protei 87.9 44 0.00095 36.1 25.3 27 338-364 71-97 (265)
119 KOG4643 Uncharacterized coiled 87.9 86 0.0019 39.5 48.4 86 224-329 246-332 (1195)
120 KOG0018 Structural maintenance 87.8 89 0.0019 39.6 32.3 12 181-192 143-154 (1141)
121 PF09787 Golgin_A5: Golgin sub 87.7 66 0.0014 38.0 31.3 19 263-281 118-136 (511)
122 TIGR01005 eps_transp_fam exopo 87.5 81 0.0018 38.8 24.6 75 215-289 153-229 (754)
123 KOG0976 Rho/Rac1-interacting s 87.4 82 0.0018 38.7 52.5 37 603-640 437-473 (1265)
124 COG5185 HEC1 Protein involved 87.2 64 0.0014 37.4 36.1 14 265-278 268-281 (622)
125 PF15619 Lebercilin: Ciliary p 87.1 40 0.00086 34.8 25.9 19 263-281 14-32 (194)
126 TIGR01005 eps_transp_fam exopo 87.0 86 0.0019 38.6 23.0 18 175-192 79-96 (754)
127 PF08614 ATG16: Autophagy prot 87.0 11 0.00024 38.5 12.9 26 404-432 159-184 (194)
128 KOG1853 LIS1-interacting prote 87.0 47 0.001 35.5 20.5 61 364-424 108-168 (333)
129 KOG0804 Cytoplasmic Zn-finger 86.8 39 0.00084 38.9 17.6 14 197-210 209-222 (493)
130 PRK03918 chromosome segregatio 86.7 94 0.002 38.8 60.3 8 94-101 38-45 (880)
131 PF05911 DUF869: Plant protein 86.7 34 0.00075 42.2 18.7 89 341-429 618-706 (769)
132 PF13851 GAS: Growth-arrest sp 86.0 46 0.00099 34.5 25.5 22 338-359 60-81 (201)
133 COG4942 Membrane-bound metallo 86.0 72 0.0016 36.7 32.6 62 319-380 45-106 (420)
134 PF14662 CCDC155: Coiled-coil 85.7 46 0.001 34.2 27.8 19 346-364 66-84 (193)
135 PF07926 TPR_MLP1_2: TPR/MLP1/ 85.6 35 0.00076 32.8 20.3 57 392-448 62-118 (132)
136 smart00787 Spc7 Spc7 kinetocho 85.4 65 0.0014 35.7 19.3 52 363-414 206-257 (312)
137 KOG0804 Cytoplasmic Zn-finger 85.2 58 0.0012 37.5 18.0 12 123-134 148-159 (493)
138 PF07464 ApoLp-III: Apolipopho 85.0 25 0.00054 35.1 13.6 100 453-552 45-148 (155)
139 PF08614 ATG16: Autophagy prot 84.7 16 0.00035 37.3 12.7 25 261-285 67-91 (194)
140 PLN02939 transferase, transfer 84.5 1.3E+02 0.0028 38.3 24.5 202 266-479 199-402 (977)
141 PF04108 APG17: Autophagy prot 84.1 86 0.0019 36.0 45.3 48 625-681 345-392 (412)
142 KOG0964 Structural maintenance 84.1 1.3E+02 0.0028 38.0 44.4 42 524-565 392-433 (1200)
143 PF14662 CCDC155: Coiled-coil 83.5 58 0.0013 33.6 27.5 47 308-354 11-57 (193)
144 KOG0996 Structural maintenance 83.0 1.5E+02 0.0033 38.1 57.5 42 704-745 1017-1058(1293)
145 PF15450 DUF4631: Domain of un 82.9 1.1E+02 0.0023 36.1 50.9 31 250-282 4-34 (531)
146 PF10146 zf-C4H2: Zinc finger- 82.3 65 0.0014 34.2 16.2 20 360-379 52-71 (230)
147 PF09730 BicD: Microtubule-ass 82.2 1.4E+02 0.0029 36.9 44.5 58 303-360 32-89 (717)
148 smart00787 Spc7 Spc7 kinetocho 81.9 89 0.0019 34.6 20.3 14 350-363 175-188 (312)
149 PF10186 Atg14: UV radiation r 81.9 76 0.0017 33.8 18.8 18 263-280 22-39 (302)
150 PF06705 SF-assemblin: SF-asse 80.6 83 0.0018 33.3 35.8 22 392-413 88-109 (247)
151 KOG1899 LAR transmembrane tyro 80.3 1.4E+02 0.0031 35.9 20.8 28 301-328 135-162 (861)
152 PF05010 TACC: Transforming ac 79.2 86 0.0019 32.7 29.5 27 392-418 79-105 (207)
153 KOG0979 Structural maintenance 78.2 2E+02 0.0044 36.5 35.2 10 196-205 558-567 (1072)
154 PF15290 Syntaphilin: Golgi-lo 78.2 89 0.0019 34.0 15.5 31 350-380 120-150 (305)
155 PF10168 Nup88: Nuclear pore c 77.9 1.9E+02 0.004 35.9 23.6 8 206-213 446-453 (717)
156 KOG0946 ER-Golgi vesicle-tethe 77.8 1.9E+02 0.0041 35.9 31.5 7 193-199 522-528 (970)
157 PF01576 Myosin_tail_1: Myosin 77.3 0.75 1.6E-05 57.2 0.0 43 691-733 601-643 (859)
158 KOG0018 Structural maintenance 77.3 2.2E+02 0.0048 36.4 35.3 44 208-251 88-131 (1141)
159 PF10481 CENP-F_N: Cenp-F N-te 76.6 1.2E+02 0.0026 33.0 17.4 22 480-501 164-185 (307)
160 PF05911 DUF869: Plant protein 76.3 2.1E+02 0.0045 35.7 29.3 135 263-413 19-158 (769)
161 TIGR01843 type_I_hlyD type I s 76.2 1.4E+02 0.003 33.5 23.7 20 262-281 82-101 (423)
162 PF11932 DUF3450: Protein of u 75.6 1.1E+02 0.0024 32.4 15.9 66 335-400 51-116 (251)
163 PF04111 APG6: Autophagy prote 74.7 71 0.0015 35.3 14.5 17 261-277 9-25 (314)
164 PF04849 HAP1_N: HAP1 N-termin 74.6 1.4E+02 0.0031 32.9 21.7 13 232-244 72-84 (306)
165 PF14942 Muted: Organelle biog 74.5 42 0.00091 33.1 11.2 106 601-706 18-143 (145)
166 PF10481 CENP-F_N: Cenp-F N-te 73.9 1.4E+02 0.003 32.5 16.0 18 397-414 110-127 (307)
167 PF06008 Laminin_I: Laminin Do 73.7 1.3E+02 0.0028 32.1 31.7 18 263-280 19-36 (264)
168 PF10473 CENP-F_leu_zip: Leuci 72.6 1E+02 0.0022 30.3 21.0 16 310-325 22-37 (140)
169 PF13949 ALIX_LYPXL_bnd: ALIX 72.5 1.4E+02 0.0031 32.0 31.5 29 438-466 203-231 (296)
170 COG0419 SbcC ATPase involved i 72.5 2.7E+02 0.0059 35.2 58.2 39 93-132 39-79 (908)
171 PRK11281 hypothetical protein; 72.4 3.1E+02 0.0066 35.8 40.6 36 465-500 293-328 (1113)
172 PRK10884 SH3 domain-containing 72.2 68 0.0015 33.4 12.8 23 259-281 91-113 (206)
173 PF05701 WEMBL: Weak chloropla 71.3 2.2E+02 0.0048 33.7 54.2 39 703-741 397-435 (522)
174 PF09738 DUF2051: Double stran 70.9 1.7E+02 0.0038 32.3 16.4 36 295-330 102-137 (302)
175 PF10473 CENP-F_leu_zip: Leuci 69.5 1.2E+02 0.0026 29.8 21.0 9 307-315 26-34 (140)
176 KOG2129 Uncharacterized conser 69.5 2.1E+02 0.0047 32.8 24.4 264 261-527 50-329 (552)
177 PF10498 IFT57: Intra-flagella 69.3 1.6E+02 0.0035 33.3 15.8 59 316-374 263-321 (359)
178 PF06008 Laminin_I: Laminin Do 69.2 1.6E+02 0.0036 31.4 32.2 24 390-413 88-111 (264)
179 PF00769 ERM: Ezrin/radixin/mo 69.2 1.6E+02 0.0036 31.3 17.9 13 368-380 82-94 (246)
180 PF12325 TMF_TATA_bd: TATA ele 68.4 1.1E+02 0.0025 29.2 15.2 35 312-346 23-57 (120)
181 PF05478 Prominin: Prominin; 68.3 3.2E+02 0.0069 34.3 26.6 20 495-514 224-243 (806)
182 PF01576 Myosin_tail_1: Myosin 68.0 1.7 3.7E-05 54.2 0.0 10 230-239 117-126 (859)
183 PF09738 DUF2051: Double stran 67.6 1.3E+02 0.0028 33.2 14.3 89 316-418 81-169 (302)
184 TIGR03185 DNA_S_dndD DNA sulfu 66.0 3.1E+02 0.0067 33.3 41.2 16 39-54 6-22 (650)
185 KOG1003 Actin filament-coating 65.9 1.7E+02 0.0037 30.3 23.7 43 327-369 82-124 (205)
186 COG4026 Uncharacterized protei 65.4 1.9E+02 0.0041 30.6 14.1 36 337-372 139-174 (290)
187 PLN03188 kinesin-12 family pro 65.4 4.3E+02 0.0093 34.7 28.1 34 395-428 1154-1188(1320)
188 PF07464 ApoLp-III: Apolipopho 64.7 84 0.0018 31.4 11.1 21 532-552 59-79 (155)
189 COG2433 Uncharacterized conser 64.4 1.4E+02 0.0031 35.7 14.4 24 392-415 484-507 (652)
190 KOG0962 DNA repair protein RAD 64.2 4.5E+02 0.0098 34.6 50.3 58 611-681 1081-1139(1294)
191 KOG3091 Nuclear pore complex, 63.9 3E+02 0.0064 32.4 17.1 14 195-208 228-241 (508)
192 PF06160 EzrA: Septation ring 63.9 3.2E+02 0.0069 32.7 54.6 18 264-281 21-38 (560)
193 KOG0946 ER-Golgi vesicle-tethe 63.7 3.8E+02 0.0081 33.5 36.2 26 469-494 804-829 (970)
194 KOG1962 B-cell receptor-associ 63.7 1.2E+02 0.0026 32.0 12.3 46 197-251 24-70 (216)
195 PRK10869 recombination and rep 63.6 3.2E+02 0.0069 32.7 26.2 12 455-466 277-288 (553)
196 PF07794 DUF1633: Protein of u 63.1 84 0.0018 36.6 11.9 142 203-358 510-657 (790)
197 KOG4360 Uncharacterized coiled 63.0 3.1E+02 0.0068 32.4 17.9 23 262-284 160-182 (596)
198 PF08647 BRE1: BRE1 E3 ubiquit 62.6 1.2E+02 0.0027 27.5 13.0 26 362-387 60-85 (96)
199 PF05557 MAD: Mitotic checkpoi 62.1 1.1E+02 0.0025 37.5 14.1 23 262-284 258-280 (722)
200 PF04048 Sec8_exocyst: Sec8 ex 61.9 1.6E+02 0.0035 28.6 13.8 82 475-568 37-118 (142)
201 PF09789 DUF2353: Uncharacteri 61.9 2.6E+02 0.0057 31.1 24.0 42 377-418 74-115 (319)
202 PRK09841 cryptic autophosphory 61.8 2.7E+02 0.0059 34.3 17.2 77 213-289 224-302 (726)
203 PRK10929 putative mechanosensi 58.9 5.3E+02 0.012 33.7 40.6 19 399-417 218-236 (1109)
204 TIGR01843 type_I_hlyD type I s 58.4 3E+02 0.0066 30.7 26.2 13 264-276 91-103 (423)
205 KOG0980 Actin-binding protein 58.3 4.8E+02 0.01 32.9 46.0 22 258-279 330-351 (980)
206 PRK11519 tyrosine kinase; Prov 57.1 4.4E+02 0.0096 32.5 17.9 74 215-288 226-301 (719)
207 PRK01156 chromosome segregatio 56.6 5E+02 0.011 32.7 54.8 8 36-43 66-73 (895)
208 TIGR00634 recN DNA repair prot 56.5 4.1E+02 0.0089 31.7 27.6 10 473-482 303-312 (563)
209 PLN03229 acetyl-coenzyme A car 56.5 4.8E+02 0.01 32.4 24.7 20 264-283 432-451 (762)
210 PF13870 DUF4201: Domain of un 56.4 2.2E+02 0.0048 28.5 22.3 96 285-387 36-131 (177)
211 TIGR00634 recN DNA repair prot 56.2 4.2E+02 0.0091 31.6 28.3 19 472-490 347-365 (563)
212 TIGR01541 tape_meas_lam_C phag 55.7 3.4E+02 0.0073 30.4 28.8 71 475-545 116-186 (332)
213 PRK10361 DNA recombination pro 55.4 4.1E+02 0.0089 31.3 27.0 54 450-503 144-197 (475)
214 PF04102 SlyX: SlyX; InterPro 55.3 63 0.0014 27.6 7.4 48 304-351 3-50 (69)
215 COG4372 Uncharacterized protei 54.6 3.8E+02 0.0082 30.7 41.0 16 178-193 7-22 (499)
216 PF15066 CAGE1: Cancer-associa 54.4 4.2E+02 0.009 31.0 26.7 7 44-50 100-106 (527)
217 PF13870 DUF4201: Domain of un 54.3 2.4E+02 0.0052 28.2 22.6 59 359-417 47-105 (177)
218 PF09755 DUF2046: Uncharacteri 53.3 3.6E+02 0.0077 30.0 35.6 23 539-561 225-247 (310)
219 PF04740 LXG: LXG domain of WX 53.2 2.6E+02 0.0056 28.3 22.9 20 475-494 103-122 (204)
220 KOG4809 Rab6 GTPase-interactin 52.8 4.7E+02 0.01 31.2 31.9 74 297-370 337-410 (654)
221 KOG0933 Structural maintenance 52.4 6.2E+02 0.013 32.5 48.0 13 243-255 633-645 (1174)
222 PRK02119 hypothetical protein; 52.2 95 0.0021 27.0 8.0 47 302-348 6-52 (73)
223 PF12252 SidE: Dot/Icm substra 51.5 6.6E+02 0.014 32.5 38.0 73 417-492 1245-1319(1439)
224 TIGR03007 pepcterm_ChnLen poly 50.9 4.6E+02 0.0099 30.5 21.4 13 178-190 78-90 (498)
225 PRK00295 hypothetical protein; 50.3 1.2E+02 0.0027 25.9 8.3 44 305-348 5-48 (68)
226 PRK04406 hypothetical protein; 49.9 1.5E+02 0.0031 26.1 8.8 45 303-347 9-53 (75)
227 KOG4460 Nuclear pore complex, 49.1 5.4E+02 0.012 30.8 18.1 27 320-346 589-615 (741)
228 PF05622 HOOK: HOOK protein; 48.8 5.7 0.00012 48.5 0.0 29 79-107 127-155 (713)
229 KOG1937 Uncharacterized conser 48.7 5E+02 0.011 30.3 34.5 14 199-212 152-165 (521)
230 PRK04325 hypothetical protein; 48.3 1.2E+02 0.0027 26.4 8.1 45 303-347 7-51 (74)
231 PF11559 ADIP: Afadin- and alp 48.2 2.7E+02 0.0058 27.1 17.4 11 174-184 5-15 (151)
232 PF15035 Rootletin: Ciliary ro 48.0 3.2E+02 0.007 27.9 20.9 20 394-413 100-119 (182)
233 PF05557 MAD: Mitotic checkpoi 48.0 3.2E+02 0.0069 33.7 14.7 15 265-279 309-323 (722)
234 COG3524 KpsE Capsule polysacch 47.9 4.3E+02 0.0094 29.4 15.0 96 167-326 148-244 (372)
235 KOG4302 Microtubule-associated 47.4 6.2E+02 0.014 31.1 31.1 22 263-284 63-84 (660)
236 PRK00106 hypothetical protein; 47.4 5.7E+02 0.012 30.6 18.7 7 703-709 430-436 (535)
237 PF04912 Dynamitin: Dynamitin 46.8 4.8E+02 0.01 29.6 28.1 24 260-283 93-116 (388)
238 COG2433 Uncharacterized conser 46.6 3.7E+02 0.008 32.5 13.9 41 320-360 423-463 (652)
239 PRK15422 septal ring assembly 46.4 2.1E+02 0.0047 25.4 10.7 20 393-412 57-76 (79)
240 PRK02793 phi X174 lysis protei 46.1 1.3E+02 0.0029 26.0 8.0 46 303-348 6-51 (72)
241 PRK00736 hypothetical protein; 46.1 1.4E+02 0.0031 25.6 8.0 45 305-349 5-49 (68)
242 PRK10929 putative mechanosensi 46.1 8.2E+02 0.018 32.0 33.0 19 297-315 179-197 (1109)
243 PF03904 DUF334: Domain of unk 45.9 4E+02 0.0086 28.3 19.7 69 475-545 117-187 (230)
244 PF08826 DMPK_coil: DMPK coile 45.7 1.9E+02 0.004 24.5 9.9 26 336-361 14-39 (61)
245 KOG1899 LAR transmembrane tyro 45.5 6.4E+02 0.014 30.7 20.1 36 304-339 110-145 (861)
246 PF10212 TTKRSYEDQ: Predicted 45.3 6E+02 0.013 30.2 16.8 10 269-278 421-430 (518)
247 PRK10869 recombination and rep 45.3 6.1E+02 0.013 30.3 27.8 32 472-503 300-331 (553)
248 PF12777 MT: Microtubule-bindi 44.7 1.1E+02 0.0024 34.2 9.2 12 179-190 87-98 (344)
249 PF15397 DUF4618: Domain of un 44.6 4.4E+02 0.0096 28.5 31.2 27 320-346 7-33 (258)
250 cd09238 V_Alix_like_1 Protein- 44.1 5E+02 0.011 29.0 26.2 30 437-466 249-278 (339)
251 PF15294 Leu_zip: Leucine zipp 44.0 4.7E+02 0.01 28.7 18.7 45 303-347 130-174 (278)
252 PF07851 TMPIT: TMPIT-like pro 44.0 2.6E+02 0.0057 31.3 11.8 58 434-491 27-88 (330)
253 PF05384 DegS: Sensor protein 43.6 3.5E+02 0.0077 27.1 21.2 44 329-372 23-66 (159)
254 PF10498 IFT57: Intra-flagella 43.3 5.4E+02 0.012 29.2 17.5 33 392-424 297-329 (359)
255 KOG3091 Nuclear pore complex, 43.2 6.2E+02 0.014 29.9 16.7 15 384-398 413-427 (508)
256 COG1322 Predicted nuclease of 42.6 6.2E+02 0.013 29.6 18.7 125 520-644 54-182 (448)
257 PF08317 Spc7: Spc7 kinetochor 42.2 5.2E+02 0.011 28.6 27.5 73 360-435 74-148 (325)
258 KOG4809 Rab6 GTPase-interactin 41.8 6.9E+02 0.015 29.9 29.9 42 90-133 120-161 (654)
259 TIGR01069 mutS2 MutS2 family p 41.7 7.2E+02 0.016 31.1 16.4 7 195-201 353-359 (771)
260 TIGR02680 conserved hypothetic 41.0 1E+03 0.022 31.8 37.2 290 263-558 232-580 (1353)
261 PF15294 Leu_zip: Leucine zipp 40.9 5.2E+02 0.011 28.3 15.6 23 479-501 254-276 (278)
262 PF14992 TMCO5: TMCO5 family 40.6 5.3E+02 0.011 28.3 15.2 26 392-417 73-98 (280)
263 KOG0240 Kinesin (SMY1 subfamil 40.4 7.3E+02 0.016 29.9 23.5 35 401-435 419-453 (607)
264 PF03915 AIP3: Actin interacti 40.3 6.5E+02 0.014 29.2 19.4 17 267-283 150-166 (424)
265 PRK00846 hypothetical protein; 39.1 2.2E+02 0.0048 25.2 8.3 44 303-346 11-54 (77)
266 PF09789 DUF2353: Uncharacteri 39.0 6E+02 0.013 28.4 28.5 24 339-362 78-101 (319)
267 PF15450 DUF4631: Domain of un 38.9 7.4E+02 0.016 29.5 48.8 48 448-495 274-325 (531)
268 KOG1962 B-cell receptor-associ 38.6 4.9E+02 0.011 27.5 12.1 16 175-190 43-58 (216)
269 cd07624 BAR_SNX7_30 The Bin/Am 38.6 4.5E+02 0.0098 26.9 25.4 45 506-550 69-113 (200)
270 PF02403 Seryl_tRNA_N: Seryl-t 38.5 3.1E+02 0.0067 25.0 11.7 16 296-311 34-49 (108)
271 KOG4403 Cell surface glycoprot 38.5 7E+02 0.015 29.0 17.6 39 461-499 380-418 (575)
272 COG4026 Uncharacterized protei 37.8 5.3E+02 0.011 27.4 19.2 51 319-369 135-185 (290)
273 TIGR03017 EpsF chain length de 37.7 6.6E+02 0.014 28.6 22.8 15 177-191 76-90 (444)
274 PF11932 DUF3450: Protein of u 37.5 5.2E+02 0.011 27.3 17.6 13 305-317 56-68 (251)
275 PF12795 MscS_porin: Mechanose 37.5 5.1E+02 0.011 27.2 22.3 23 261-283 45-67 (240)
276 KOG4403 Cell surface glycoprot 36.4 7.5E+02 0.016 28.8 18.7 19 371-389 309-327 (575)
277 PF04740 LXG: LXG domain of WX 36.0 4.7E+02 0.01 26.4 21.4 19 450-468 21-39 (204)
278 PF13949 ALIX_LYPXL_bnd: ALIX 35.7 5.8E+02 0.012 27.3 30.8 20 412-431 150-169 (296)
279 PF14643 DUF4455: Domain of un 35.4 7.8E+02 0.017 28.8 56.3 172 487-686 262-434 (473)
280 KOG4438 Centromere-associated 34.7 7.9E+02 0.017 28.6 38.5 33 528-560 325-357 (446)
281 cd07667 BAR_SNX30 The Bin/Amph 34.5 6.1E+02 0.013 27.2 27.0 26 440-465 212-237 (240)
282 PF09304 Cortex-I_coil: Cortex 34.5 4E+02 0.0087 25.1 15.5 30 332-361 36-65 (107)
283 PF06156 DUF972: Protein of un 34.4 2.5E+02 0.0054 26.3 8.4 37 303-339 6-42 (107)
284 PF12777 MT: Microtubule-bindi 34.0 1.7E+02 0.0036 32.7 8.6 6 405-410 286-291 (344)
285 PF04065 Not3: Not1 N-terminal 34.0 6.1E+02 0.013 27.1 19.4 90 392-504 11-100 (233)
286 PF07111 HCR: Alpha helical co 33.6 1E+03 0.022 29.5 55.0 46 698-743 566-612 (739)
287 PF05622 HOOK: HOOK protein; 33.5 14 0.0003 45.3 0.0 18 266-283 265-282 (713)
288 KOG4302 Microtubule-associated 33.2 1E+03 0.022 29.4 34.6 95 471-565 160-262 (660)
289 cd07666 BAR_SNX7 The Bin/Amphi 32.9 6.4E+02 0.014 27.0 24.5 177 456-644 37-235 (243)
290 KOG2264 Exostosin EXT1L [Signa 32.7 2.7E+02 0.0059 33.2 9.9 7 153-159 8-14 (907)
291 KOG0288 WD40 repeat protein Ti 32.7 8.4E+02 0.018 28.3 18.0 12 353-364 54-65 (459)
292 PF10211 Ax_dynein_light: Axon 32.5 5.6E+02 0.012 26.2 12.8 20 217-236 18-37 (189)
293 PF00769 ERM: Ezrin/radixin/mo 32.1 6.5E+02 0.014 26.8 17.6 14 302-315 9-22 (246)
294 PF04394 DUF536: Protein of un 31.9 2E+02 0.0042 23.0 6.1 39 313-351 4-42 (45)
295 TIGR03319 YmdA_YtgF conserved 31.8 9.4E+02 0.02 28.6 23.3 7 519-525 274-280 (514)
296 TIGR02132 phaR_Bmeg polyhydrox 31.6 5.9E+02 0.013 26.2 13.8 85 346-437 71-155 (189)
297 PF03962 Mnd1: Mnd1 family; I 31.2 5.9E+02 0.013 26.1 14.6 28 304-331 68-95 (188)
298 PF15030 DUF4527: Protein of u 31.1 7E+02 0.015 26.9 16.0 77 304-380 22-98 (277)
299 cd09237 V_ScBro1_like Protein- 31.0 7.9E+02 0.017 27.5 29.4 30 437-466 259-288 (356)
300 COG0497 RecN ATPase involved i 31.0 1E+03 0.022 28.7 24.1 215 292-512 165-387 (557)
301 KOG2220 Predicted signal trans 31.0 1.1E+03 0.024 29.2 19.3 54 541-595 626-679 (714)
302 PF08581 Tup_N: Tup N-terminal 30.8 3.8E+02 0.0083 23.8 10.9 55 314-368 6-60 (79)
303 TIGR03752 conj_TIGR03752 integ 30.8 5.8E+02 0.012 30.0 12.2 21 261-281 59-79 (472)
304 TIGR01010 BexC_CtrB_KpsE polys 30.6 7.9E+02 0.017 27.3 16.8 107 212-328 126-237 (362)
305 PF08172 CASP_C: CASP C termin 30.6 3.1E+02 0.0066 29.5 9.4 20 393-412 111-130 (248)
306 PF15066 CAGE1: Cancer-associa 30.4 9.6E+02 0.021 28.2 29.7 10 557-566 513-522 (527)
307 KOG0962 DNA repair protein RAD 30.0 1.5E+03 0.032 30.2 51.0 28 653-680 1052-1079(1294)
308 PF06818 Fez1: Fez1; InterPro 29.9 6.7E+02 0.014 26.2 22.8 90 268-366 10-99 (202)
309 COG0598 CorA Mg2+ and Co2+ tra 29.6 7.9E+02 0.017 27.0 15.5 30 471-500 180-209 (322)
310 PF07111 HCR: Alpha helical co 29.5 1.2E+03 0.025 29.0 54.6 37 474-510 474-510 (739)
311 PF12004 DUF3498: Domain of un 29.3 18 0.00039 42.3 0.0 18 40-57 101-118 (495)
312 PF13874 Nup54: Nucleoporin co 29.2 3.9E+02 0.0084 25.9 9.2 20 305-324 44-63 (141)
313 PF05010 TACC: Transforming ac 28.8 7E+02 0.015 26.1 29.9 31 349-379 25-55 (207)
314 PF07889 DUF1664: Protein of u 28.5 5.5E+02 0.012 24.8 12.9 21 393-413 100-120 (126)
315 TIGR03545 conserved hypothetic 27.8 6.1E+02 0.013 30.5 12.2 10 404-413 263-272 (555)
316 KOG2751 Beclin-like protein [S 27.7 1E+03 0.022 27.7 14.6 18 260-277 142-159 (447)
317 KOG1655 Protein involved in va 27.7 7.2E+02 0.016 25.9 13.5 118 260-398 32-149 (218)
318 KOG2196 Nuclear porin [Nuclear 27.3 8.1E+02 0.017 26.4 20.6 35 451-485 172-206 (254)
319 COG1283 NptA Na+/phosphate sym 27.3 1.1E+03 0.025 28.1 18.2 150 465-616 325-483 (533)
320 PF05266 DUF724: Protein of un 27.2 7E+02 0.015 25.7 12.3 83 290-372 102-184 (190)
321 PF02994 Transposase_22: L1 tr 27.2 1.9E+02 0.004 32.9 7.5 18 396-413 144-161 (370)
322 PRK10361 DNA recombination pro 26.7 1.1E+03 0.024 27.8 26.3 26 420-445 98-123 (475)
323 COG3074 Uncharacterized protei 26.4 4.4E+02 0.0095 23.0 10.5 14 346-359 52-65 (79)
324 KOG2180 Late Golgi protein sor 26.2 1.3E+03 0.029 28.6 18.4 14 602-615 238-251 (793)
325 PF04582 Reo_sigmaC: Reovirus 26.1 1.2E+02 0.0025 33.9 5.5 50 321-370 44-93 (326)
326 PF07989 Microtub_assoc: Micro 25.9 4.5E+02 0.0098 23.0 8.8 21 262-282 8-28 (75)
327 COG4372 Uncharacterized protei 25.9 1.1E+03 0.023 27.3 34.9 24 217-240 41-64 (499)
328 KOG4286 Dystrophin-like protei 25.4 1.4E+03 0.031 28.6 16.9 53 317-369 197-249 (966)
329 PF08172 CASP_C: CASP C termin 25.4 8.7E+02 0.019 26.1 12.4 33 393-428 97-129 (248)
330 PF15290 Syntaphilin: Golgi-lo 25.4 9.4E+02 0.02 26.5 15.8 11 284-294 49-60 (305)
331 TIGR01010 BexC_CtrB_KpsE polys 25.3 9.6E+02 0.021 26.6 13.3 15 176-190 72-86 (362)
332 PF05701 WEMBL: Weak chloropla 24.7 1.2E+03 0.026 27.6 56.1 18 262-279 35-52 (522)
333 PF03999 MAP65_ASE1: Microtubu 24.6 3.3E+02 0.0072 33.0 9.5 362 263-639 35-411 (619)
334 KOG0239 Kinesin (KAR3 subfamil 24.6 1.4E+03 0.03 28.2 18.4 15 514-528 446-460 (670)
335 PF07139 DUF1387: Protein of u 24.4 1E+03 0.022 26.5 14.5 41 507-547 160-200 (302)
336 PF05957 DUF883: Bacterial pro 24.4 5.1E+02 0.011 23.1 10.8 34 433-466 36-69 (94)
337 PF15070 GOLGA2L5: Putative go 24.4 1.4E+03 0.029 28.0 41.6 24 605-628 346-369 (617)
338 PRK00409 recombination and DNA 24.1 1.5E+03 0.032 28.4 17.7 15 225-239 334-348 (782)
339 PF04949 Transcrip_act: Transc 23.8 7.4E+02 0.016 24.7 16.3 111 301-411 37-148 (159)
340 KOG1666 V-SNARE [Intracellular 23.7 8.9E+02 0.019 25.6 11.8 66 214-285 31-96 (220)
341 TIGR01541 tape_meas_lam_C phag 23.6 1.1E+03 0.023 26.5 29.9 47 494-547 164-210 (332)
342 PRK10803 tol-pal system protei 23.4 5.4E+02 0.012 27.7 9.9 29 338-366 59-87 (263)
343 PRK15178 Vi polysaccharide exp 23.3 1.2E+03 0.027 27.1 13.3 50 270-326 258-307 (434)
344 TIGR03545 conserved hypothetic 23.1 1.4E+03 0.03 27.6 15.1 26 615-640 520-545 (555)
345 PLN03229 acetyl-coenzyme A car 23.0 1.5E+03 0.034 28.2 22.6 47 520-567 614-666 (762)
346 PF10267 Tmemb_cc2: Predicted 22.9 1.2E+03 0.026 26.9 17.7 92 473-579 214-309 (395)
347 PF06818 Fez1: Fez1; InterPro 22.9 8.9E+02 0.019 25.3 22.8 20 394-413 85-104 (202)
348 PF09755 DUF2046: Uncharacteri 22.6 1.1E+03 0.024 26.3 36.8 16 372-387 92-107 (310)
349 PF07439 DUF1515: Protein of u 22.6 6.5E+02 0.014 23.8 8.7 26 656-682 54-79 (112)
350 PRK00106 hypothetical protein; 22.5 1.4E+03 0.03 27.4 23.4 17 669-685 464-480 (535)
351 cd07658 F-BAR_NOSTRIN The F-BA 22.4 9.3E+02 0.02 25.4 22.2 34 638-671 171-204 (239)
352 PRK13169 DNA replication intia 22.1 5.4E+02 0.012 24.3 8.3 24 305-328 8-31 (110)
353 PRK00409 recombination and DNA 22.0 1.6E+03 0.035 28.1 16.7 10 192-201 355-364 (782)
354 COG4913 Uncharacterized protei 21.9 1.6E+03 0.035 28.1 26.4 244 263-509 639-894 (1104)
355 PF14643 DUF4455: Domain of un 21.7 1.3E+03 0.029 26.9 46.3 18 261-278 11-28 (473)
356 PF09731 Mitofilin: Mitochondr 21.7 1.4E+03 0.03 27.2 29.8 93 639-732 406-506 (582)
357 PF07851 TMPIT: TMPIT-like pro 21.6 1.2E+03 0.025 26.3 12.5 12 353-364 45-56 (330)
358 PF03915 AIP3: Actin interacti 21.6 1.3E+03 0.028 26.8 19.2 29 297-325 205-233 (424)
359 KOG2391 Vacuolar sorting prote 21.6 1.2E+03 0.026 26.4 14.4 11 180-190 124-134 (365)
360 PF06005 DUF904: Protein of un 21.5 5.4E+02 0.012 22.4 11.2 15 399-413 56-70 (72)
361 PF09602 PhaP_Bmeg: Polyhydrox 21.5 8.6E+02 0.019 24.7 22.1 22 621-642 138-159 (165)
362 PF10805 DUF2730: Protein of u 21.5 6.5E+02 0.014 23.3 9.8 22 307-328 37-58 (106)
363 KOG2911 Uncharacterized conser 21.0 1.4E+03 0.029 26.8 13.7 35 515-549 318-354 (439)
364 PF14197 Cep57_CLD_2: Centroso 21.0 5.4E+02 0.012 22.2 10.0 19 266-284 3-21 (69)
365 PF04582 Reo_sigmaC: Reovirus 20.8 2E+02 0.0043 32.2 5.9 44 339-382 76-119 (326)
366 PF10212 TTKRSYEDQ: Predicted 20.5 1.5E+03 0.032 27.1 17.1 16 176-191 215-230 (518)
367 KOG2629 Peroxisomal membrane a 20.4 1E+03 0.022 26.3 11.0 37 297-333 121-157 (300)
368 cd08915 V_Alix_like Protein-in 20.4 1.2E+03 0.025 25.8 35.1 30 437-466 252-281 (342)
369 PF05278 PEARLI-4: Arabidopsis 20.4 1.1E+03 0.025 25.6 13.8 104 307-411 161-264 (269)
No 1
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3.2e-125 Score=1098.30 Aligned_cols=748 Identities=54% Similarity=0.776 Sum_probs=724.5
Q ss_pred CCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhhcCCeEEEEEEEEEEEcCceeecCCCCCCC-ccccCCCCCCeeEEecCC
Q 004356 1 MEGGARKKNGEFPSDAGVIPRAVKQIFDILEAQHAEYSMKVTFLELYNEEISDLLALEETS-KFVDDKSKKPIALMEDGK 79 (759)
Q Consensus 1 M~G~~~~~~g~~~~~~GIIPRal~~LF~~l~~~~~~~sV~vS~lEIYnE~v~DLL~~~~~~-~~~~~~~~~~l~i~ed~~ 79 (759)
|+||.+..+|..|+++|||||++.+||+.++..+.+|+|+|||+|+|||+|+|||+|.... +.......+++. +++
T Consensus 146 MeG~~~~~~g~l~~~aGIIPRal~~IFd~Le~~~~EYsvKVSfLELYNEEl~DLLa~~~~~~~~~~~k~~~~~~---~~k 222 (1041)
T KOG0243|consen 146 MEGGERKKNGELPSEAGIIPRALRQIFDTLEAQGAEYSVKVSFLELYNEELTDLLASEDTSDKKLRIKDDSTIV---DGK 222 (1041)
T ss_pred eecCcccccCCCCccCCcchHHHHHHHHHHHhcCCeEEEEEEehhhhhHHHHHhcCCccccccccccccCCccc---CCc
Confidence 6777766778899999999999999999999999999999999999999999999998753 222222222232 679
Q ss_pred CCeEecCcEEEEecCHHHHHHHHHhchhccccccccccCCCCCcceEEEEEEEEeecCCCCCcceEEeeeccccccCCCc
Q 004356 80 GGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSEN 159 (759)
Q Consensus 80 ~gv~V~gL~e~~V~s~~e~~~lL~~G~~~R~~~~T~~N~~SSRSH~IftI~v~~~~~~~~~~~~~~~skL~lVDLAGSEr 159 (759)
|||+|+||.+++|+++.|++.+|.+|..+|++|+|.||++|||||+||+|+||+++.++.|++++++||||||||||||+
T Consensus 223 ggV~vkGlEEi~V~~A~ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsItvhike~t~~geelvK~GKLNLVDLAGSEN 302 (1041)
T KOG0243|consen 223 GGVIVKGLEEIIVTNADEIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSITVHIKENTPEGEELVKIGKLNLVDLAGSEN 302 (1041)
T ss_pred CcEEEecceeeeecchhHHHHHHHhhhhHhHHHHHHhhhhccccceEEEEEEEEecCCCcchhhHhhcccceeecccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCchhhHHHHHHhhhhHHHHHHHHHHHhhCCCCCCCCCCccccccccccCCCceeeEEeecCCCCCChHhHHHHHH
Q 004356 160 ISRSGAREGRAREAGEINKSLLTLGRVINALVEHSGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLSTLD 239 (759)
Q Consensus 160 ~~ks~a~g~r~kEa~~INkSLlaLg~VI~aL~~~~~hIPYRdSKLTrLLqdsLGGnskT~mIatVSP~~~~~eETlsTL~ 239 (759)
++++||.+.|++|||.||+||+||||||+||+++++|||||||||||||||||||++||||||||||+..+++||+|||.
T Consensus 303 I~RSGA~~~RArEAG~INqSLLTLGRVInALVe~s~HIPYRESKLTRLLQDSLGGkTKT~iIATiSPa~~~lEETlSTLE 382 (1041)
T KOG0243|consen 303 ISRSGARNGRAREAGEINQSLLTLGRVINALVEHSGHIPYRESKLTRLLQDSLGGKTKTCIIATISPAKHNLEETLSTLE 382 (1041)
T ss_pred ccccccccchhHHhhhhhHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhCCCceeEEEEEeCCCcccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhCCCcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 240 YAHRAKNIKNKPEINQKMMKSAMIKDLYSEIDRLKQEVYAAREKNGIYIPRDRYLQEEAEKKAMAEKIERMELESESKDK 319 (759)
Q Consensus 240 fA~rak~Ikn~p~vN~~~~~~~li~~l~~Ei~~Lk~el~~~r~k~g~~~~~~~~~~~e~e~~~~~~~i~~~~~~l~~~~~ 319 (759)
||.|||+|+|+|.+|+.++++.++++|+.||++||.+|.++|++||+|++.++|.+++.+++.+.++|+.++.+++..++
T Consensus 383 YA~RAKnIkNKPevNQkl~K~~llKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~ 462 (1041)
T KOG0243|consen 383 YAHRAKNIKNKPEVNQKLMKKTLLKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEK 462 (1041)
T ss_pred HHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 320 QLMELQELYNSQLLLTAELSEKLEKTEKKLEETEHALSDLEEKHRQANATIKEKDFLIANLLKSEKALVERAIELRTELE 399 (759)
Q Consensus 320 ~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~l~~~e~~~~~~~~~l~e~e~~i~~l~~~e~~l~~~~~~l~~~l~ 399 (759)
++..+++.|..+...+..|.+++..++..|......+..+++.+.+++..+++++++|+.+..+|..+..++..++..++
T Consensus 463 ~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~~l~~~a~~l~~~~~ 542 (1041)
T KOG0243|consen 463 QLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKSEEKLVDRATKLRRSLE 542 (1041)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHH
Q 004356 400 NAASDVSNLFAKIERKDKIEEGNRILIQMFQSQLTQQLEILHKTVATSVTQQEQQLKDMEEDMQSFVSTKAEATEELRGR 479 (759)
Q Consensus 400 ~~~~~~~~L~~ki~~k~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 479 (759)
....++.+|+.+|+++.++...|+..+..|..++...+..+..++.....++..++..|...+.+|++.+....+.++..
T Consensus 543 ~s~~d~s~l~~kld~~~~~~d~n~~~~~~~~~~l~~~~~~~~~~v~~~~s~~~~~l~~~~~~~~s~~s~~~~~~e~~~t~ 622 (1041)
T KOG0243|consen 543 ESQDDLSSLFEKLDRKDRLDDDNQEVIDDFQSQLSENLSTLHGLVASSSSQQISQLTTMLAQMESFLSAKSKATEIMKTK 622 (1041)
T ss_pred HHHHHHHHHHHHhhhhhccccccHHHHHHHhhhhhHHHHHHHHHHhhhhhhHHHHHHHHHhhhHHHhhhhccchhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHhhhHHhhHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 004356 480 LGKLKAMYGSGIKALDGIAGELDGNSRSTFGDLNSEVSKHSHALEDLFKGIASEADSLLNDLQSSLYKQEEKLTAYAQQQ 559 (759)
Q Consensus 480 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 559 (759)
+...++.++++++.++.+...++..+...++.|.+..-+|..++..++......+..+++++++.++.|++.+..|++|+
T Consensus 623 ~~~~r~~~~~~~e~~q~~~~~~k~~~~s~l~~i~s~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~~q~~~~~l~~~qe 702 (1041)
T KOG0243|consen 623 ISKDRDILSEVLESLQQLQEVLKKDSESCLEVINSSITSSINELESMLETIANTADDLLQNISSRLSNQQEILSLFANQE 702 (1041)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHHHHhHhhHHHHHHhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 004356 560 REAHSRAVENARSVSKVTVNFFKTLDMHASNLTKIVEEAQTVNDQKLFEFEKKFEESAANEERQLLEKVAELLASSNARK 639 (759)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~l~~~~~~~~ 639 (759)
+..+..+....+.++..+..||+++..++.++.......+......+++|++.|+. .+.+.++++++|+.++.++.+++
T Consensus 703 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~e~~~~~~q~~ 781 (1041)
T KOG0243|consen 703 LQELVLSQDSAQELSELTSTFFQTLDNQAEKLTNLFSEANISLSQKLSSFQKKFES-IAEDEKQLVEDIKELLSSHDQRN 781 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHhhhHHh-hHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998 88899999999999999999999
Q ss_pred HHHHHHHHHHHHHhHHhhhHhHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhhhhhhhhhhhchHHHHHHHHHhhhhchH
Q 004356 640 KQLVQMAVQDLRESASSRTSQLQKEMSTMQDSTFSVKAEWSAHMNKTESHYLEDTSAVENGKKDLEVVLQNCLKQAKMGA 719 (759)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~mq~~~~~~k~~~~~~~~~~e~~~~e~~~~~~~~~~~m~~~lq~c~~~~~~~~ 719 (759)
.++|..++..++..+......+...|+.|++.+.+.|..|+.+..++++++.++..+++.+++.|...++.|...+...+
T Consensus 782 ~e~~~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~k~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 861 (1041)
T KOG0243|consen 782 NELLDIALQTLRSAVNSRESNLTESVSVMQNLSDDLKTIWQTLGKQNENHHNEVLSAIEEKQQAMKSVLKELLENAESQV 861 (1041)
T ss_pred HHHHHHHHHHHHHhhccchhHHHHhhHHHhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhchhhHHHHHHHHhhhhccc
Q 004356 720 QQWRTAQESLLNLEKNNVAAVDSIVRYVLYRNI 752 (759)
Q Consensus 720 ~~w~~~~~~~~~l~~~~~~~~~s~~~~~~~~~~ 752 (759)
.+|+.+++++.++...+++.+++++++..+.|+
T Consensus 862 ~~~~~~~~~lk~~~~~~~~~~~~l~~~~~~~~~ 894 (1041)
T KOG0243|consen 862 DECKEAIESLKSLESNHVATLDSLVRGVSEQNK 894 (1041)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHhhhhhhhH
Confidence 999999999999999999999999999988654
No 2
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=5.9e-70 Score=624.32 Aligned_cols=316 Identities=37% Similarity=0.538 Sum_probs=273.5
Q ss_pred CCCCCCCCCC-CCCCCCcHHHHHHHHHHHHhhc---CCeEEEEEEEEEEEcCceeecCCCCCCCccccCCCCCCeeEEec
Q 004356 2 EGGARKKNGE-FPSDAGVIPRAVKQIFDILEAQ---HAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALMED 77 (759)
Q Consensus 2 ~G~~~~~~g~-~~~~~GIIPRal~~LF~~l~~~---~~~~sV~vS~lEIYnE~v~DLL~~~~~~~~~~~~~~~~l~i~ed 77 (759)
+|+++++.|- .|.++|||||+|++||.++... +..|+|.|||+|||||.|+|||+.. +++.+|+++|+
T Consensus 99 SGKSYTMMG~~~~~e~GIIPrlCEeLF~ri~~nq~~~~sy~VevSymEIYcErVrDLL~~p--------~~kg~LRVREH 170 (1221)
T KOG0245|consen 99 SGKSYTMMGFQEPDEPGIIPRLCEELFSRIADNQSQQMSYSVEVSYMEIYCERVRDLLNAP--------KSKGGLRVREH 170 (1221)
T ss_pred CCcceeeeccCCCCCCCchhHHHHHHHHHHhhcccccceEEEEEeehhHHHHHHHHHhhCC--------CCCCCceeecc
Confidence 4677777664 4689999999999999999764 4589999999999999999999831 24678999999
Q ss_pred CCCCeEecCcEEEEecCHHHHHHHHHhchhccccccccccCCCCCcceEEEEEEEEeecCCCC-CcceEEeeeccccccC
Q 004356 78 GKGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEG-EEMIKCGKLNLVDLAG 156 (759)
Q Consensus 78 ~~~gv~V~gL~e~~V~s~~e~~~lL~~G~~~R~~~~T~~N~~SSRSH~IftI~v~~~~~~~~~-~~~~~~skL~lVDLAG 156 (759)
|..|+||.+|+.+.|+|+.|+..+|..|++.|++|+|.||+.|||||+||+|++.++.....+ -...++|||+||||||
T Consensus 171 P~lGPYVedLS~~aV~Sy~dI~~~md~GNkqRTtAATnMNdtSSRSHaVFtIvftQk~~~~~~~l~sek~SKIsLVDLAG 250 (1221)
T KOG0245|consen 171 PILGPYVEDLSKLAVTSYADIQDLMDEGNKQRTTAATNMNDTSSRSHAVFTIVFTQKKHDQDTGLDSEKVSKISLVDLAG 250 (1221)
T ss_pred CccChhHhHhhhcccccHHHHHHHHHhcchhhhhhhhccccccccceeEEEEEEEeeeccccCCCcceeeeeeeEEeccC
Confidence 999999999999999999999999999999999999999999999999999999987765543 4567899999999999
Q ss_pred CCcccCCCCchhhHHHHHHhhhhHHHHHHHHHHHhhCC-------CCCCCCCCccccccccccCCCceeeEEeecCCCCC
Q 004356 157 SENISRSGAREGRAREAGEINKSLLTLGRVINALVEHS-------GHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIH 229 (759)
Q Consensus 157 SEr~~ks~a~g~r~kEa~~INkSLlaLg~VI~aL~~~~-------~hIPYRdSKLTrLLqdsLGGnskT~mIatVSP~~~ 229 (759)
|||+..+|+.|+|+|||.+||+||+|||+||+||++.+ .+||||||.||+||+++||||+||+|||++||++.
T Consensus 251 SERasstGa~G~RLKEGa~INKSLtTLGkVISALAe~~~~k~~ks~fIPYRDSVLTWLLkEnLGGNSKTaMIAAlSPAdi 330 (1221)
T KOG0245|consen 251 SERASSTGANGDRLKEGANINKSLTTLGKVISALAESQKGKKKKSDFIPYRDSVLTWLLKENLGGNSKTAMIAALSPADI 330 (1221)
T ss_pred cccccccCCCccchhcccccchHHHHHHHHHHHHHHHhccCCCCCccccchHHHHHHHHHHhcCCcchhhhhhccChhhc
Confidence 99999999999999999999999999999999999843 49999999999999999999999999999999999
Q ss_pred ChHhHHHHHHHHHHhccCccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhCCC-cCCcchhHHHHHHHHHHHHHHH
Q 004356 230 CLEETLSTLDYAHRAKNIKNKPEINQKMMKSAMIKDLYSEIDRLKQEVYAAREKNGI-YIPRDRYLQEEAEKKAMAEKIE 308 (759)
Q Consensus 230 ~~eETlsTL~fA~rak~Ikn~p~vN~~~~~~~li~~l~~Ei~~Lk~el~~~r~k~g~-~~~~~~~~~~e~e~~~~~~~i~ 308 (759)
||+|||||||||.|||+|+|+|+||+++ +..+|++|++||.+||..+.......-. ..++... .....++
T Consensus 331 NyeETLSTLRYAdRAK~Iv~~avVNEdp-naKLIRELreEv~rLksll~~~~~~~~~~~~~p~~~--------~~~~~~e 401 (1221)
T KOG0245|consen 331 NYEETLSTLRYADRAKQIVNNAVVNEDP-NAKLIRELREEVARLKSLLRAQGLGDIAVEGSPSAL--------LSQPEIE 401 (1221)
T ss_pred ChHHHHHHHHHhhHhhhhhccceeCCCc-cHHHHHHHHHHHHHHHHHHhccccccccccCCcccc--------cccccHH
Confidence 9999999999999999999999999996 8899999999999999987644321100 0111110 1234566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 309 RMELESESKDKQLMELQELYNSQLLL 334 (759)
Q Consensus 309 ~~~~~l~~~~~~l~~l~~~~~~~~~~ 334 (759)
.+..+|+..++.+.++++.|++...+
T Consensus 402 ~~~~~L~E~Ek~mael~etW~EKl~~ 427 (1221)
T KOG0245|consen 402 ELRERLQETEKIMAELNETWEEKLRE 427 (1221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677888888899998888765443
No 3
>KOG4280 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.5e-69 Score=609.92 Aligned_cols=272 Identities=48% Similarity=0.684 Sum_probs=254.8
Q ss_pred CCCCCCCCCCCCCCCCcHHHHHHHHHHHHhhc--CCeEEEEEEEEEEEcCceeecCCCCCCCccccCCCCCCeeEEecCC
Q 004356 2 EGGARKKNGEFPSDAGVIPRAVKQIFDILEAQ--HAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALMEDGK 79 (759)
Q Consensus 2 ~G~~~~~~g~~~~~~GIIPRal~~LF~~l~~~--~~~~sV~vS~lEIYnE~v~DLL~~~~~~~~~~~~~~~~l~i~ed~~ 79 (759)
+|+++|+.|..+...|||||++.+||..|+.. ...|+|+|||+|||||+|+|||+|.+ ++.+.|+++|+
T Consensus 97 sGKTyTM~G~~~~~~GiiPraf~~LF~~I~~~~~~~~f~vrvS~lEiYnE~i~DLL~~~~---------~~~l~lre~p~ 167 (574)
T KOG4280|consen 97 SGKTYTMIGPDPELRGLIPRAFEHLFRHIDERKEKTRFLVRVSYLEIYNESIRDLLSPVN---------PKGLELREDPK 167 (574)
T ss_pred CCCceEeeCCChhhCCchhHHHHHHHHHHHhccccceEEEEeehHHHHhHHHHHHhCccC---------cCCceeeEcCC
Confidence 57777778877999999999999999999875 34799999999999999999999865 26799999999
Q ss_pred CCeEecCcEEEEecCHHHHHHHHHhchhccccccccccCCCCCcceEEEEEEEEeecCCCCCcceEEeeeccccccCCCc
Q 004356 80 GGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSEN 159 (759)
Q Consensus 80 ~gv~V~gL~e~~V~s~~e~~~lL~~G~~~R~~~~T~~N~~SSRSH~IftI~v~~~~~~~~~~~~~~~skL~lVDLAGSEr 159 (759)
.||||+||+++.|.++++++.+|..|..+|++++|.||..|||||+||+|+|+.......+...++.|||||||||||||
T Consensus 168 ~Gv~V~nlse~~v~s~~d~~~~l~~G~~nR~vgat~mn~~SsRSH~ift~~i~~~~~~~~~~~~~~~~rlnlvDLagsEr 247 (574)
T KOG4280|consen 168 CGVYVENLSEMDVESAEDAQQLLVVGLANRRVGATSMNEESSRSHAIFTIHIESSEKSDGGLMSGRSSKLNLVDLAGSER 247 (574)
T ss_pred CceEecCcceeecCCHHHHHHHHHHHHhhcchhhccCCcccccceEEEEEEEEeecccCCCccccccceeeeeeccchhh
Confidence 99999999999999999999999999999999999999999999999999999855555567778999999999999999
Q ss_pred ccCCCCchhhHHHHHHhhhhHHHHHHHHHHHhhCCC-CCCCCCCccccccccccCCCceeeEEeecCCCCCChHhHHHHH
Q 004356 160 ISRSGAREGRAREAGEINKSLLTLGRVINALVEHSG-HVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLSTL 238 (759)
Q Consensus 160 ~~ks~a~g~r~kEa~~INkSLlaLg~VI~aL~~~~~-hIPYRdSKLTrLLqdsLGGnskT~mIatVSP~~~~~eETlsTL 238 (759)
..++|+.|+|++||++||+||++||+||+||+++.. ||||||||||+||||||||||||+|||||||+..|++||+|||
T Consensus 248 ~~~tga~G~rlkEa~~IN~SLs~LG~vI~aLvd~~~~HIPYRdSkLT~LLqdSLGGN~kT~mianvsp~~~~~~ETlsTL 327 (574)
T KOG4280|consen 248 QSKTGAEGERLKEATNINLSLSALGNVISALVDGSKTHIPYRDSKLTRLLQDSLGGNSKTTMIANVSPSSDNYEETLSTL 327 (574)
T ss_pred hcccCccchhhhhhcccchhHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHcCCCceEEEEEecCchhhhhHHHHHHH
Confidence 999999999999999999999999999999999876 9999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCccccccccccchHHHHHHHHHHHHHHHHHHHHHHhh
Q 004356 239 DYAHRAKNIKNKPEINQKMMKSAMIKDLYSEIDRLKQEVYAAREK 283 (759)
Q Consensus 239 ~fA~rak~Ikn~p~vN~~~~~~~li~~l~~Ei~~Lk~el~~~r~k 283 (759)
+||+|||.|+|+|.+|.++ +...++.|+.||.+||.++......
T Consensus 328 rfA~Rak~I~nk~~ined~-~~~~~~~lq~ei~~Lk~~l~~~~~~ 371 (574)
T KOG4280|consen 328 RFAQRAKAIKNKPVINEDP-KDALLRELQEEIERLKKELDPGGSP 371 (574)
T ss_pred HHHHHHHHhhccccccCCc-chhhHHHHHHHHHHHHHhhccccCc
Confidence 9999999999999999996 6789999999999999999765543
No 4
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=100.00 E-value=1.2e-63 Score=549.15 Aligned_cols=260 Identities=42% Similarity=0.628 Sum_probs=236.2
Q ss_pred CCCCCCCCCC--CCCCCCcHHHHHHHHHHHHhhcCC--eEEEEEEEEEEEcCceeecCCCCCCCccccCCCCCCeeEEec
Q 004356 2 EGGARKKNGE--FPSDAGVIPRAVKQIFDILEAQHA--EYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALMED 77 (759)
Q Consensus 2 ~G~~~~~~g~--~~~~~GIIPRal~~LF~~l~~~~~--~~sV~vS~lEIYnE~v~DLL~~~~~~~~~~~~~~~~l~i~ed 77 (759)
+|++++..|. ++...|||||++++||+.|...+. +|+|+|||||||+|+++|||+|. +.++.+++|
T Consensus 94 sGKTytm~G~~~d~~~~GIipRi~~diF~~Iys~~~n~efhVkVsy~EIYmEKi~DLL~~~----------k~nlsvheD 163 (607)
T KOG0240|consen 94 SGKTYTMEGIGHDPEEMGIIPRILNDIFDHIYSMEENLEFHVKVSYFEIYMEKIRDLLDPE----------KTNLSVHED 163 (607)
T ss_pred CCcceeecccCCChhhcCcHHHHHHHHHHHHhcCcccceEEEEEEeehhhhhHHHHHhCcc----------cCCceeecc
Confidence 3555555443 346779999999999999987644 99999999999999999999965 468999999
Q ss_pred CCCCeEecCcEEEEecCHHHHHHHHHhchhccccccccccCCCCCcceEEEEEEEEeecCCCCCcceEEeeeccccccCC
Q 004356 78 GKGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGS 157 (759)
Q Consensus 78 ~~~gv~V~gL~e~~V~s~~e~~~lL~~G~~~R~~~~T~~N~~SSRSH~IftI~v~~~~~~~~~~~~~~~skL~lVDLAGS 157 (759)
.+.++||+|+++..|.++++++..++.|..+|+++.|.||.+|||||+||+|+|.+..... ...++|||+|||||||
T Consensus 164 K~~v~~vkG~t~~~v~s~d~v~~~i~~g~~nr~va~t~mn~~sSRSHsIF~i~VkQ~n~e~---~~~~~gkLyLVDLaGS 240 (607)
T KOG0240|consen 164 KNRVPYVKGVTERFVSSPDEVLDVIDEGKSNRHVAVTNMNEHSSRSHSIFLIHVKQENVED---KRKLSGKLYLVDLAGS 240 (607)
T ss_pred cCCCceecCceeEEecCHHHHHHHHhcccccchhhhccccccccccceEEEEEEEeccccc---hhhccccEEEEEcccc
Confidence 9999999999999999999999999999999999999999999999999999998865433 2357899999999999
Q ss_pred CcccCCCCchhhHHHHHHhhhhHHHHHHHHHHHhhC-CCCCCCCCCccccccccccCCCceeeEEeecCCCCCChHhHHH
Q 004356 158 ENISRSGAREGRAREAGEINKSLLTLGRVINALVEH-SGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLS 236 (759)
Q Consensus 158 Er~~ks~a~g~r~kEa~~INkSLlaLg~VI~aL~~~-~~hIPYRdSKLTrLLqdsLGGnskT~mIatVSP~~~~~eETls 236 (759)
|+++++|+.|.-+.||.+||+||.|||+||+||+++ ..|||||||||||||||||||||+|.+|.||||+..+-.||.+
T Consensus 241 EkvsKtga~g~vleEaK~INkSLsaLgnvI~aLa~g~~shipYRDSKLTRILqdSLGGNsRTtlIi~csPss~n~~ET~S 320 (607)
T KOG0240|consen 241 EKVSKTGAEGAVLEEAKNINKSLSALGNVINALAEGPKSHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSLNEAETKS 320 (607)
T ss_pred cccCCCCccchhHHHHhhhhhhHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhCCCcceEEEEecCCcccccccccc
Confidence 999999999999999999999999999999999998 7899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCccccccccccchHHHHHHHHHHHHHHH
Q 004356 237 TLDYAHRAKNIKNKPEINQKMMKSAMIKDLYSEIDRLK 274 (759)
Q Consensus 237 TL~fA~rak~Ikn~p~vN~~~~~~~li~~l~~Ei~~Lk 274 (759)
||+|+.|||.|+|.+.+|.........+.|..+.+.+.
T Consensus 321 Tl~fg~rak~ikN~v~~n~e~~~e~~~r~~e~~kd~~~ 358 (607)
T KOG0240|consen 321 TLRFGNRAKTIKNTVWVNLELTAEEWKRKLEKKKDKNV 358 (607)
T ss_pred chhhccccccccchhhhhhHhhHHHHHHHHHHHHhHHH
Confidence 99999999999999999998877777777776544433
No 5
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=7.8e-62 Score=572.12 Aligned_cols=279 Identities=40% Similarity=0.640 Sum_probs=240.6
Q ss_pred CCCCCCCCCCC---------CCCCCcHHHHHHHHHHHHhhc-------CCeEEEEEEEEEEEcCceeecCCCCCCCcccc
Q 004356 2 EGGARKKNGEF---------PSDAGVIPRAVKQIFDILEAQ-------HAEYSMKVTFLELYNEEISDLLALEETSKFVD 65 (759)
Q Consensus 2 ~G~~~~~~g~~---------~~~~GIIPRal~~LF~~l~~~-------~~~~sV~vS~lEIYnE~v~DLL~~~~~~~~~~ 65 (759)
+|+++|.+|.. +.++|||||++++||..+... ...|.|+|||+|||||.|+|||+|..
T Consensus 177 SGKTYTM~G~~~~~~de~~s~~e~GIIPRaledLF~~I~e~q~k~~d~~~~y~V~vSyLEIYNEkI~DLLsp~~------ 250 (1320)
T PLN03188 177 SGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERLFARINEEQIKHADRQLKYQCRCSFLEIYNEQITDLLDPSQ------ 250 (1320)
T ss_pred CCCCEeeCCCCCcccccccccccCCchHHHHHHHHHHHHhhhhhccccccceEEEEEEEeeecCcceecccccc------
Confidence 56677777742 467999999999999998642 34799999999999999999998643
Q ss_pred CCCCCCeeEEecCCCCeEecCcEEEEecCHHHHHHHHHhchhccccccccccCCCCCcceEEEEEEEEeecC-CCCCcce
Q 004356 66 DKSKKPIALMEDGKGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECT-PEGEEMI 144 (759)
Q Consensus 66 ~~~~~~l~i~ed~~~gv~V~gL~e~~V~s~~e~~~lL~~G~~~R~~~~T~~N~~SSRSH~IftI~v~~~~~~-~~~~~~~ 144 (759)
+.+.|++|+.+|++|.||+++.|.|+++++.+|..|..+|++++|.||..|||||+||+|+|...... ..+...+
T Consensus 251 ----k~L~IRED~kgGv~VeGLTEv~V~S~ED~l~LL~~G~~nR~tasT~mN~~SSRSHaIFtI~Ves~~k~~~dg~ss~ 326 (1320)
T PLN03188 251 ----KNLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSVADGLSSF 326 (1320)
T ss_pred ----CCceEEEcCCCCeEeCCCeEEeCCCHHHHHHHHHHHhccceeccCCCCCccCCCceeEEEEEEEeecccCCCCcce
Confidence 46899999999999999999999999999999999999999999999999999999999999865432 2344557
Q ss_pred EEeeeccccccCCCcccCCCCchhhHHHHHHhhhhHHHHHHHHHHHhh-----CCCCCCCCCCccccccccccCCCceee
Q 004356 145 KCGKLNLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVINALVE-----HSGHVPYRDSKLTRLLRDSLGGKTKTC 219 (759)
Q Consensus 145 ~~skL~lVDLAGSEr~~ks~a~g~r~kEa~~INkSLlaLg~VI~aL~~-----~~~hIPYRdSKLTrLLqdsLGGnskT~ 219 (759)
+.|+|+|||||||||.+++++.|.+++||++||+||++||+||++|++ +..||||||||||+||||+|||||+|+
T Consensus 327 r~SkLnLVDLAGSER~kkTga~G~RLkEA~~INKSLsaLGnVI~ALae~Sq~gk~~HIPYRDSKLTrLLQDSLGGNSKTv 406 (1320)
T PLN03188 327 KTSRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEISQTGKQRHIPYRDSRLTFLLQESLGGNAKLA 406 (1320)
T ss_pred EEEEEEEEECCCchhccccCcccHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCCCcCCCCcchHHHHHHHhcCCCceEE
Confidence 889999999999999999999999999999999999999999999986 346999999999999999999999999
Q ss_pred EEeecCCCCCChHhHHHHHHHHHHhccCccccccccccchH-----HHHHHHHHHHHHHHHHHHHHHhhCCCcCCc
Q 004356 220 IIATVSPSIHCLEETLSTLDYAHRAKNIKNKPEINQKMMKS-----AMIKDLYSEIDRLKQEVYAAREKNGIYIPR 290 (759)
Q Consensus 220 mIatVSP~~~~~eETlsTL~fA~rak~Ikn~p~vN~~~~~~-----~li~~l~~Ei~~Lk~el~~~r~k~g~~~~~ 290 (759)
|||||||+..+++||++||+||.|||+|+|+|.+|..+.+. .+|++|+.||.+||........+||.|...
T Consensus 407 MIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpvvNe~~~~~vn~LrelIr~Lk~EL~rLK~~~~~p~~~n~~y~t~ 482 (1320)
T PLN03188 407 MVCAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQDDVNFLREVIRQLRDELQRVKANGNNPTNPNVAYSTA 482 (1320)
T ss_pred EEEecCCchhhHHHHHHHHHHHHHHhhcCccceeccchhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccc
Confidence 99999999999999999999999999999999999875332 245555555555555544434445666543
No 6
>KOG0242 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.1e-60 Score=555.82 Aligned_cols=267 Identities=46% Similarity=0.709 Sum_probs=246.6
Q ss_pred CCCCCCCCCCCCCCCcHHHHHHHHHHHHhhc-CCeEEEEEEEEEEEcCceeecCCCCCCCccccCCCCCCeeEEecCCCC
Q 004356 3 GGARKKNGEFPSDAGVIPRAVKQIFDILEAQ-HAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALMEDGKGG 81 (759)
Q Consensus 3 G~~~~~~g~~~~~~GIIPRal~~LF~~l~~~-~~~~sV~vS~lEIYnE~v~DLL~~~~~~~~~~~~~~~~l~i~ed~~~g 81 (759)
|+++|..| .+.+|||||+++.+||+.|... +.+|.|+|||+|||||.|+|||+|.. .++.|++|+.+|
T Consensus 99 GKTyTM~G-~~~~PGii~la~~dif~~I~~~~~r~f~v~vSYlEIYNE~I~DLL~~~~----------~~L~irED~~~g 167 (675)
T KOG0242|consen 99 GKTYTMSG-SEDDPGIIPLAMKDIFEKIDKSGEREFSVRVSYLEIYNERIRDLLNPDG----------GDLRLREDSEGG 167 (675)
T ss_pred CCceEEec-cCCCCCeeehHHHHHHHHHHhcCCceeEEEEEEEEEeccccccccCCCC----------CCceEeEcCCCC
Confidence 44444455 4888999999999999999875 45899999999999999999999765 359999999999
Q ss_pred eEecCcEEEEecCHHHHHHHHHhchhccccccccccCCCCCcceEEEEEEEEeecCCCCCcceEEeeeccccccCCCccc
Q 004356 82 VFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSENIS 161 (759)
Q Consensus 82 v~V~gL~e~~V~s~~e~~~lL~~G~~~R~~~~T~~N~~SSRSH~IftI~v~~~~~~~~~~~~~~~skL~lVDLAGSEr~~ 161 (759)
++|.||++++|.|++++..+|..|..+|+++.|.+|..|||||+||+|+|........ . +.|+|+|||||||||..
T Consensus 168 i~V~gL~e~~v~s~e~~~~ll~~g~~~R~~g~T~~N~~SSRSHaIl~i~i~s~~~~~~---~-~~s~L~lIDLAGSERas 243 (675)
T KOG0242|consen 168 IVVPGLTEETVSSREELLELLQKGNKNRTTGETNLNEQSSRSHAILRITVESRGREAS---S-RVSKLNLIDLAGSERAS 243 (675)
T ss_pred EEecCCeeecCCCHHHHHHHHHHhhccCcccccccccccchhhheeeEEEEecccccc---c-hhheehhhhhhhhhhhh
Confidence 9999999999999999999999999999999999999999999999999987654433 1 67999999999999999
Q ss_pred CCCCchhhHHHHHHhhhhHHHHHHHHHHHhhC--CCCCCCCCCccccccccccCCCceeeEEeecCCCCCChHhHHHHHH
Q 004356 162 RSGAREGRAREAGEINKSLLTLGRVINALVEH--SGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLSTLD 239 (759)
Q Consensus 162 ks~a~g~r~kEa~~INkSLlaLg~VI~aL~~~--~~hIPYRdSKLTrLLqdsLGGnskT~mIatVSP~~~~~eETlsTL~ 239 (759)
++++.|.|++||++||+||++||+||++|+++ ..|||||||||||||||+|||||+|+|||||+|+..+|+||.+||.
T Consensus 244 ~T~~~G~RlkEG~~INrSLlaLgtVI~~Ls~~~~~~hipYRDSKLTRiLq~sLgGn~rt~~I~tisp~~~~~~eT~nTL~ 323 (675)
T KOG0242|consen 244 RTGNEGVRLKEGAHINRSLLALGTVINKLSEGKRPRHIPYRDSKLTRLLQDSLGGNARTAIIATISPSSSHYEETKNTLK 323 (675)
T ss_pred hhhccceeccccchhhHHHHHHHHHHHHHccccccCCCCccccHHHHhchhhcCCCccEEEEEEeCchhhHHHHHHHHHH
Confidence 99999999999999999999999999999997 5699999999999999999999999999999999999999999999
Q ss_pred HHHHhccCccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhC
Q 004356 240 YAHRAKNIKNKPEINQKMMKSAMIKDLYSEIDRLKQEVYAAREKN 284 (759)
Q Consensus 240 fA~rak~Ikn~p~vN~~~~~~~li~~l~~Ei~~Lk~el~~~r~k~ 284 (759)
||+|||+|++++.+|.......+++.+..+|..|+.++..++.+.
T Consensus 324 fAsrak~i~~~~~~n~~~~~~~~~~~~~~~i~~l~~e~~~~~~~~ 368 (675)
T KOG0242|consen 324 FASRAKEITTKAQVNVILSDKALLKYLQREIAELEAELERLKKKL 368 (675)
T ss_pred HHHHhhhcccccccceecchhhhhHHHHHHHHHHHHHHHhhcccc
Confidence 999999999999999998888899888999999999998776553
No 7
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3.2e-59 Score=526.53 Aligned_cols=268 Identities=39% Similarity=0.621 Sum_probs=245.1
Q ss_pred CCCCCCCCCCCCCCCCcHHHHHHHHHHHHhhc---CCeEEEEEEEEEEEcCceeecCCCCCCCccccCCCCCCeeEEecC
Q 004356 2 EGGARKKNGEFPSDAGVIPRAVKQIFDILEAQ---HAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALMEDG 78 (759)
Q Consensus 2 ~G~~~~~~g~~~~~~GIIPRal~~LF~~l~~~---~~~~sV~vS~lEIYnE~v~DLL~~~~~~~~~~~~~~~~l~i~ed~ 78 (759)
+|++++..| ....+|||||.+..||..|... +..|.|.|||+|||||.+||||+|.. .++.++++++.
T Consensus 105 sGKsYsmmG-t~~QpGiIPrlc~~lFe~I~k~~n~~~tfkVeVSymEIynEkv~DLLdPk~--------ssqtlkVrehs 175 (1714)
T KOG0241|consen 105 SGKSYSMMG-TAEQPGIIPRLCESLFERIDKESNPSQTFKVEVSYMEIYNEKVRDLLDPKG--------SSQTLKVREHS 175 (1714)
T ss_pred CCceeEeec-cCCCCCchhHHHHHHHHHHHhccCCCceEEEEEEHHHHhhcchhhhhCCCC--------CcceeEEeecc
Confidence 455555555 4889999999999999999754 44899999999999999999999876 35689999999
Q ss_pred CCCeEecCcEEEEecCHHHHHHHHHhchhccccccccccCCCCCcceEEEEEEEEeecCCCC-CcceEEeeeccccccCC
Q 004356 79 KGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEG-EEMIKCGKLNLVDLAGS 157 (759)
Q Consensus 79 ~~gv~V~gL~e~~V~s~~e~~~lL~~G~~~R~~~~T~~N~~SSRSH~IftI~v~~~~~~~~~-~~~~~~skL~lVDLAGS 157 (759)
--|+||.||++..|.|++|+-.+|..|+++|++++|.||..|||||+||.|.|.+.-.++.. -..-+.|||.|||||||
T Consensus 176 vlGp~vdGLS~laV~S~qdId~lm~egnKsrtvaatnmn~EssrsHaVFslvvtQ~l~D~ktg~SgeKvsklslVDLAgs 255 (1714)
T KOG0241|consen 176 VLGPYVDGLSQLAVTSFQDIDSLMSEGNKSRTVAATNMNEESSRSHAVFSLVVTQTLYDLKTGHSGEKVSKLSLVDLAGS 255 (1714)
T ss_pred cccccccchhhhhcccHHHHHHHHHhccccceeeeecccccccccceeEEEEEeeEEeccccCcchhheeeeeEEEeccc
Confidence 99999999999999999999999999999999999999999999999999999876544432 23346799999999999
Q ss_pred CcccCCCCchhhHHHHHHhhhhHHHHHHHHHHHhhC------CCCCCCCCCccccccccccCCCceeeEEeecCCCCCCh
Q 004356 158 ENISRSGAREGRAREAGEINKSLLTLGRVINALVEH------SGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCL 231 (759)
Q Consensus 158 Er~~ks~a~g~r~kEa~~INkSLlaLg~VI~aL~~~------~~hIPYRdSKLTrLLqdsLGGnskT~mIatVSP~~~~~ 231 (759)
||.+++|+.|.|++|+++||+||++||.||.||+++ ..+||||||.||+||+|+|||||+|+||+||||+..||
T Consensus 256 erasktga~g~rlkegsNinkSLttLglVIsaLadq~n~kgkdKfvPYrDSVLTwLLkD~LGGNsrTvMiatvSPaAdny 335 (1714)
T KOG0241|consen 256 ERASKTGAAGSRLKEGSNINKSLTTLGLVISALADQKNGKGKDKFVPYRDSVLTWLLKDNLGGNSRTVMIATVSPAADNY 335 (1714)
T ss_pred cccccccchhhhhhhcCCcchhhHHHHHHHHHHHHhhcCCCccccccchhHHHHHHHHhhcCCCceeEEEEEecccccch
Confidence 999999999999999999999999999999999984 35899999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHhccCccccccccccchHHHHHHHHHHHHHHHHHHHH
Q 004356 232 EETLSTLDYAHRAKNIKNKPEINQKMMKSAMIKDLYSEIDRLKQEVYA 279 (759)
Q Consensus 232 eETlsTL~fA~rak~Ikn~p~vN~~~~~~~li~~l~~Ei~~Lk~el~~ 279 (759)
+||+|||+||.|||.|+|.+.||.++ +...|++++.|++.|+.+|..
T Consensus 336 eeTlStLRYadrAkrIvN~avvNedp-narvirElReEve~lr~qL~~ 382 (1714)
T KOG0241|consen 336 EETLSTLRYADRAKRIVNHAVVNEDP-NARVIRELREEVEKLREQLEQ 382 (1714)
T ss_pred HHHHHHHHHHHHHHHhhccccccCCc-hHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999996 788999999999999998765
No 8
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=2.6e-57 Score=497.02 Aligned_cols=248 Identities=68% Similarity=0.978 Sum_probs=231.5
Q ss_pred CCCCCCCCCCC----------CCCCCcHHHHHHHHHHHHhhcCCeEEEEEEEEEEEcCceeecCCCCCCCccccCCCCCC
Q 004356 2 EGGARKKNGEF----------PSDAGVIPRAVKQIFDILEAQHAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKP 71 (759)
Q Consensus 2 ~G~~~~~~g~~----------~~~~GIIPRal~~LF~~l~~~~~~~sV~vS~lEIYnE~v~DLL~~~~~~~~~~~~~~~~ 71 (759)
+|++++..|.. +..+|||||++.+||+.+...+..|+|+|||+|||||.|+|||++.. ..+++
T Consensus 93 SGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~~Lf~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~-------~~~~~ 165 (352)
T cd01364 93 TGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQLFEKLESQNTEYSVKVSYLELYNEELFDLLSSES-------DLNKP 165 (352)
T ss_pred CCCcEEecCCCcccccccccccccCCchHHHHHHHHHHHHhccceeEEEEEEEEeeCCeeeeCCCCcc-------ccCcc
Confidence 46666666643 45799999999999999998888999999999999999999998754 13567
Q ss_pred eeEEec--CCCCeEecCcEEEEecCHHHHHHHHHhchhccccccccccCCCCCcceEEEEEEEEeecCCCCCcceEEeee
Q 004356 72 IALMED--GKGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKL 149 (759)
Q Consensus 72 l~i~ed--~~~gv~V~gL~e~~V~s~~e~~~lL~~G~~~R~~~~T~~N~~SSRSH~IftI~v~~~~~~~~~~~~~~~skL 149 (759)
+.++++ +.+|++|.|++++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|+|.+......+...+..|+|
T Consensus 166 l~i~e~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~i~~i~i~~~~~~~~~~~~~~~s~l 245 (352)
T cd01364 166 LRIFDDTNNKGGVVIQGLEEITVNNANEGLKLLEKGSAKRKTAATLMNDQSSRSHSIFSITIHIKETTISGEELVKIGKL 245 (352)
T ss_pred ceEEeccCcCCCEEeCCcEEEEeCCHHHHHHHHHHHhhhcccccCcCCCCCCCCceEEEEEEEEeccCCCCCccEEEEEE
Confidence 999999 589999999999999999999999999999999999999999999999999999988777667778889999
Q ss_pred ccccccCCCcccCCCCchhhHHHHHHhhhhHHHHHHHHHHHhhCCCCCCCCCCccccccccccCCCceeeEEeecCCCCC
Q 004356 150 NLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVINALVEHSGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIH 229 (759)
Q Consensus 150 ~lVDLAGSEr~~ks~a~g~r~kEa~~INkSLlaLg~VI~aL~~~~~hIPYRdSKLTrLLqdsLGGnskT~mIatVSP~~~ 229 (759)
+||||||||+.+++++.+.+.+|+..||+||++|++||.+|+.+..|||||+||||+||+|+|||||+|+||+||||+..
T Consensus 246 ~~VDLAGsE~~~~~~~~~~~~~e~~~iN~SL~~L~~vi~al~~~~~~vpyR~S~LT~lL~~~Lgg~s~t~~I~~vsp~~~ 325 (352)
T cd01364 246 NLVDLAGSENIGRSGAENKRAREAGNINQSLLTLGRVINALVEKSPHIPYRESKLTRLLQDSLGGRTKTSIIATISPASI 325 (352)
T ss_pred EEEECCCccccccccCcchhhHHHhhhhHHHHHHHHHHHHHHcCCCCCCCcccHHHHHHHHhcCCCceEEEEEEeCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHhHHHHHHHHHHhccCccccccccc
Q 004356 230 CLEETLSTLDYAHRAKNIKNKPEINQK 256 (759)
Q Consensus 230 ~~eETlsTL~fA~rak~Ikn~p~vN~~ 256 (759)
+++||++||+||.||++|+|+|.+|++
T Consensus 326 ~~~eTl~TL~~a~~~~~i~n~P~~n~~ 352 (352)
T cd01364 326 NLEETLSTLEYAHRAKNIKNKPEVNQK 352 (352)
T ss_pred cHHHHHHHHHHHHHHhhccCccccCCC
Confidence 999999999999999999999999974
No 9
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=1.9e-57 Score=495.36 Aligned_cols=235 Identities=49% Similarity=0.708 Sum_probs=213.4
Q ss_pred CCCCCCCCCCCC-------CCCCcHHHHHHHHHHHHhhc------CCeEEEEEEEEEEEcCceeecCCCCCCCccccCCC
Q 004356 2 EGGARKKNGEFP-------SDAGVIPRAVKQIFDILEAQ------HAEYSMKVTFLELYNEEISDLLALEETSKFVDDKS 68 (759)
Q Consensus 2 ~G~~~~~~g~~~-------~~~GIIPRal~~LF~~l~~~------~~~~sV~vS~lEIYnE~v~DLL~~~~~~~~~~~~~ 68 (759)
+|++++..|... .++|||||++++||..+... +..|.|+|||+|||||+|+|||+|..
T Consensus 86 SGKTyTm~G~~~~~~~~~~~~~Giipr~~~~Lf~~i~~~~~~~~~~~~~~v~~S~~EIyne~v~DLL~~~~--------- 156 (337)
T cd01373 86 SGKTYTMMGPSSSDDESPHGLQGVIPRIFEYLFSLIQREEEKRGDGLKFLCKCSFLEIYNEQITDLLDPTS--------- 156 (337)
T ss_pred CCceEEecCCCCccccccccCCCHHHHHHHHHHHHHHhhhhhcccCceEEEEEEEEeecCCEeeeCCCCCC---------
Confidence 567777777543 47899999999999998643 34799999999999999999998643
Q ss_pred CCCeeEEecCCCCeEecCcEEEEecCHHHHHHHHHhchhccccccccccCCCCCcceEEEEEEEEeecCCCCCcceEEee
Q 004356 69 KKPIALMEDGKGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGK 148 (759)
Q Consensus 69 ~~~l~i~ed~~~gv~V~gL~e~~V~s~~e~~~lL~~G~~~R~~~~T~~N~~SSRSH~IftI~v~~~~~~~~~~~~~~~sk 148 (759)
..+.+++++.+|++|.|++++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|+|........ ...++.|+
T Consensus 157 -~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~-~~~~~~s~ 234 (337)
T cd01373 157 -RNLKIREDIKKGVYVENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIESWEKKAS-STNIRTSR 234 (337)
T ss_pred -CCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhccCcccCcCCCCCCCccEEEEEEEEEeecCCC-CCcEEEEE
Confidence 4689999999999999999999999999999999999999999999999999999999999986543332 23467899
Q ss_pred eccccccCCCcccCCCCchhhHHHHHHhhhhHHHHHHHHHHHhh----CCCCCCCCCCccccccccccCCCceeeEEeec
Q 004356 149 LNLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVINALVE----HSGHVPYRDSKLTRLLRDSLGGKTKTCIIATV 224 (759)
Q Consensus 149 L~lVDLAGSEr~~ks~a~g~r~kEa~~INkSLlaLg~VI~aL~~----~~~hIPYRdSKLTrLLqdsLGGnskT~mIatV 224 (759)
|+|||||||||..++++.|.+++|+.+||+||++||+||.+|++ +..||||||||||+||+|+|||||+|+|||||
T Consensus 235 l~~VDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~aL~~~~~~~~~~ipyR~SkLT~lL~dsLggns~t~~I~~v 314 (337)
T cd01373 235 LNLVDLAGSERQKDDGAEGVRLKEAKNINKSLSTLGHVIMALVDVAHGKQRHVPYRDSKLTFLLRDSLGGNAKTTIIANV 314 (337)
T ss_pred EEEEECCCCCcccccCCccHhhhhhccccHHHHHHHHHHHHHHhhccCCCCccCCcccHHHHHHHHhcCCCceEEEEEEE
Confidence 99999999999999999999999999999999999999999986 35799999999999999999999999999999
Q ss_pred CCCCCChHhHHHHHHHHHHhccC
Q 004356 225 SPSIHCLEETLSTLDYAHRAKNI 247 (759)
Q Consensus 225 SP~~~~~eETlsTL~fA~rak~I 247 (759)
||+..+++||++||+||.|||.|
T Consensus 315 sP~~~~~~eTl~TL~fa~rak~I 337 (337)
T cd01373 315 SPSSKCFGETLSTLKFAQRAKLI 337 (337)
T ss_pred CCCcccHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999987
No 10
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=1.7e-57 Score=496.05 Aligned_cols=235 Identities=46% Similarity=0.707 Sum_probs=218.3
Q ss_pred CCCCCCCCCCCCCCCCcHHHHHHHHHHHHhhc--CCeEEEEEEEEEEEcCceeecCCCCCCCccccCCCCCCeeEEecCC
Q 004356 2 EGGARKKNGEFPSDAGVIPRAVKQIFDILEAQ--HAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALMEDGK 79 (759)
Q Consensus 2 ~G~~~~~~g~~~~~~GIIPRal~~LF~~l~~~--~~~~sV~vS~lEIYnE~v~DLL~~~~~~~~~~~~~~~~l~i~ed~~ 79 (759)
+|++++..|. +.++|||||++++||+.++.. +..|.|+|||+|||||.|+|||++. .+++.+++|+.
T Consensus 99 SGKTyTm~G~-~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~~~----------~~~l~i~ed~~ 167 (338)
T cd01370 99 AGKTHTMLGT-DSDPGLMVLTMKDLFDKIEERKDDKEFEVSLSYLEIYNETIRDLLSPS----------SGPLELREDPN 167 (338)
T ss_pred CCCeEEEcCC-CCCCchHHHHHHHHHHhhhhcccCceEEEEEEEEEEECCEEEECCCCC----------CCCceEEEcCC
Confidence 4666666665 689999999999999999875 4689999999999999999999864 34799999999
Q ss_pred CCeEecCcEEEEecCHHHHHHHHHhchhccccccccccCCCCCcceEEEEEEEEeecCCCCCcceEEeeeccccccCCCc
Q 004356 80 GGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSEN 159 (759)
Q Consensus 80 ~gv~V~gL~e~~V~s~~e~~~lL~~G~~~R~~~~T~~N~~SSRSH~IftI~v~~~~~~~~~~~~~~~skL~lVDLAGSEr 159 (759)
++++|.|++++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|+|.+.............|+|+|||||||||
T Consensus 168 ~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~i~~~~~~~~~~~~~~~s~l~~VDLAGsEr 247 (338)
T cd01370 168 QGIVVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEANATSSRSHAVLQITVRQKDRTASINQQVRIGKLSLIDLAGSER 247 (338)
T ss_pred CCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccccccCccCcceEEEEEEEEEEecCCCCCCcEEEEEEEEEECCCCcc
Confidence 99999999999999999999999999999999999999999999999999998876554334557889999999999999
Q ss_pred ccCCCCchhhHHHHHHhhhhHHHHHHHHHHHhhCC---CCCCCCCCccccccccccCCCceeeEEeecCCCCCChHhHHH
Q 004356 160 ISRSGAREGRAREAGEINKSLLTLGRVINALVEHS---GHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLS 236 (759)
Q Consensus 160 ~~ks~a~g~r~kEa~~INkSLlaLg~VI~aL~~~~---~hIPYRdSKLTrLLqdsLGGnskT~mIatVSP~~~~~eETls 236 (759)
.+++++.|.+++|+..||+||++||+||.+|+.+. .||||||||||+||+|+|||||+|+||+||||+..+++||++
T Consensus 248 ~~~~~~~g~~~~E~~~IN~SL~~L~~vi~~L~~~~~~~~~ipyR~SkLT~lL~d~Lggn~~t~~I~~vsp~~~~~~eTl~ 327 (338)
T cd01370 248 ASATNNRGQRLKEGANINRSLLALGNCINALVDGKKKNKHIPYRDSKLTRLLKDSLGGNCKTVMIANISPSSSHYEETHN 327 (338)
T ss_pred ccccCCCCccccccchhhHHHHHHHHHHHHHHhccCCCCcCCCcCCHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHH
Confidence 99999999999999999999999999999999987 899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccC
Q 004356 237 TLDYAHRAKNI 247 (759)
Q Consensus 237 TL~fA~rak~I 247 (759)
||+||.|||+|
T Consensus 328 TL~fa~ra~~I 338 (338)
T cd01370 328 TLKYANRAKNI 338 (338)
T ss_pred HHHHHHHhccC
Confidence 99999999987
No 11
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=3.7e-56 Score=486.65 Aligned_cols=235 Identities=39% Similarity=0.654 Sum_probs=214.2
Q ss_pred CCCCCCCCCCCCCCCCcHHHHHHHHHHHHhhcCCeEEEEEEEEEEEcCceeecCCCCCCCccccCCCCCCeeEEecCCCC
Q 004356 2 EGGARKKNGEFPSDAGVIPRAVKQIFDILEAQHAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALMEDGKGG 81 (759)
Q Consensus 2 ~G~~~~~~g~~~~~~GIIPRal~~LF~~l~~~~~~~sV~vS~lEIYnE~v~DLL~~~~~~~~~~~~~~~~l~i~ed~~~g 81 (759)
+|++++..|. +.++|||||++++||+.+.. |.|+|||+|||||.|+|||++.... ...++++.+++|+.++
T Consensus 100 SGKTyTm~G~-~~~~Gli~r~~~~lF~~~~~----~~v~~S~~EIyne~v~DLL~~~~~~----~~~~~~l~i~ed~~~~ 170 (345)
T cd01368 100 SGKTYTMQGS-PGDGGILPRSLDVIFNSIGG----YSVFVSYVEIYNNYIYDLLEDSPSS----TKKRQSLRLREDHNGN 170 (345)
T ss_pred CCCeEEecCC-CCCCchHHHHHHHHHHHHHh----eeEEEEEEEEeCCEeEeCCCCcccc----ccCCCceEEEECCCCC
Confidence 4666666765 68999999999999999876 9999999999999999999976521 1235689999999999
Q ss_pred eEecCcEEEEecCHHHHHHHHHhchhccccccccccCCCCCcceEEEEEEEEeecCCCC-----CcceEEeeeccccccC
Q 004356 82 VFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEG-----EEMIKCGKLNLVDLAG 156 (759)
Q Consensus 82 v~V~gL~e~~V~s~~e~~~lL~~G~~~R~~~~T~~N~~SSRSH~IftI~v~~~~~~~~~-----~~~~~~skL~lVDLAG 156 (759)
++|.|++++.|.|++|++.+|..|..+|.+++|.+|..|||||+||+|+|.+......+ ...+..|+|+||||||
T Consensus 171 ~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~i~~i~v~~~~~~~~~~~~~~~~~~~~s~l~~VDLAG 250 (345)
T cd01368 171 MYVAGLTEVEVSSTEEAREVFKRGQKNRRVAGTKLNRESSRSHSVFTIKLVQAPGDSDGDVDQDKDQITVSQLSLVDLAG 250 (345)
T ss_pred EEecCCEEEEeCCHHHHHHHHHHhhccceeccccCcCCCCCceEEEEEEEEEeccCcccccccCCCceEEEEEEEEeccc
Confidence 99999999999999999999999999999999999999999999999999876544322 2457889999999999
Q ss_pred CCcccCCCCchhhHHHHHHhhhhHHHHHHHHHHHhh------CCCCCCCCCCccccccccccCCCceeeEEeecCCCCCC
Q 004356 157 SENISRSGAREGRAREAGEINKSLLTLGRVINALVE------HSGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHC 230 (759)
Q Consensus 157 SEr~~ks~a~g~r~kEa~~INkSLlaLg~VI~aL~~------~~~hIPYRdSKLTrLLqdsLGGnskT~mIatVSP~~~~ 230 (759)
|||..++++.|.+++|++.||+||++||+||.+|++ +..||||||||||+||+|+|||||+|+||+||||+..+
T Consensus 251 sEr~~~~~~~g~~~~E~~~IN~SL~aL~~vi~aL~~~~~~~~~~~~iPyR~SkLT~lL~~~l~g~s~t~~I~~vsp~~~~ 330 (345)
T cd01368 251 SERTSRTQNTGERLKEAGNINTSLMTLGKCIEVLRENQLSGSTNKMVPYRDSKLTHLFQNYFDGEGKARMIVNVNPCASD 330 (345)
T ss_pred ccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhcccCCCCcCCCcCCHHHHHHHHhcCCCCeEEEEEEeCCchhh
Confidence 999999999999999999999999999999999997 46799999999999999999999999999999999999
Q ss_pred hHhHHHHHHHHHHhc
Q 004356 231 LEETLSTLDYAHRAK 245 (759)
Q Consensus 231 ~eETlsTL~fA~rak 245 (759)
++||++||+||.+|+
T Consensus 331 ~~eTl~tL~fa~~a~ 345 (345)
T cd01368 331 YDETLHVMKFSAIAQ 345 (345)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999999985
No 12
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=1.6e-55 Score=483.54 Aligned_cols=245 Identities=43% Similarity=0.653 Sum_probs=223.8
Q ss_pred CCCCCCCCCCCCCCCCcHHHHHHHHHHHHhhc---CCeEEEEEEEEEEEcCceeecCCCCCCCccccCCCCCCeeEEecC
Q 004356 2 EGGARKKNGEFPSDAGVIPRAVKQIFDILEAQ---HAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALMEDG 78 (759)
Q Consensus 2 ~G~~~~~~g~~~~~~GIIPRal~~LF~~l~~~---~~~~sV~vS~lEIYnE~v~DLL~~~~~~~~~~~~~~~~l~i~ed~ 78 (759)
+|++++.+|. +.++|||||++++||+.+... ...|+|+|||+|||||.|+|||++.. ..+.++.+++++
T Consensus 100 SGKT~Tm~G~-~~~~Gli~r~~~~Lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~-------~~~~~l~i~~~~ 171 (356)
T cd01365 100 SGKSYTMMGY-KEEKGIIPRLCEELFQRIESKKEQNLSYEVEVSYMEIYNEKVRDLLNPKK-------KNKGNLKVREHP 171 (356)
T ss_pred CCCeEEecCC-CCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCeeeeCCCCCc-------cCCcCceEEECC
Confidence 5666666775 568999999999999999764 34899999999999999999998763 124578999999
Q ss_pred CCCeEecCcEEEEecCHHHHHHHHHhchhccccccccccCCCCCcceEEEEEEEEeecCCC-CCcceEEeeeccccccCC
Q 004356 79 KGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPE-GEEMIKCGKLNLVDLAGS 157 (759)
Q Consensus 79 ~~gv~V~gL~e~~V~s~~e~~~lL~~G~~~R~~~~T~~N~~SSRSH~IftI~v~~~~~~~~-~~~~~~~skL~lVDLAGS 157 (759)
.+|++|+|++++.|.|++|++.+|..|.++|.+++|.+|..|||||+||+|+|.+...... +......|+|+|||||||
T Consensus 172 ~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~l~v~~~~~~~~~~~~~~~~s~l~~VDLAGs 251 (356)
T cd01365 172 VLGPYVEDLSKVAVTSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVFTIVLTQKKLDKETDLTTEKVSKISLVDLAGS 251 (356)
T ss_pred CCCEEeCCCEEEEeCCHHHHHHHHHHHHhcccccCCCCCCCcCCceEEEEEEEEEEecccCCCCCceEEEEEEeeecccc
Confidence 9999999999999999999999999999999999999999999999999999987655432 234567899999999999
Q ss_pred CcccCCCCchhhHHHHHHhhhhHHHHHHHHHHHhhC--------CCCCCCCCCccccccccccCCCceeeEEeecCCCCC
Q 004356 158 ENISRSGAREGRAREAGEINKSLLTLGRVINALVEH--------SGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIH 229 (759)
Q Consensus 158 Er~~ks~a~g~r~kEa~~INkSLlaLg~VI~aL~~~--------~~hIPYRdSKLTrLLqdsLGGnskT~mIatVSP~~~ 229 (759)
||..+++..+.+++|+..||+||++||+||.+|+.+ ..||||||||||+||+|+||||++|+||+||||+..
T Consensus 252 Er~~~~~~~~~~~~E~~~IN~SL~aL~~vi~~l~~~~~~~~~~~~~~ipyR~SkLT~lL~~~lgg~s~t~~I~~vsp~~~ 331 (356)
T cd01365 252 ERASSTGAEGDRLKEGSNINKSLTTLGKVISALADNSSAKSKKKSSFIPYRDSVLTWLLKENLGGNSKTAMIATISPADI 331 (356)
T ss_pred cccccccccchhhHHHHHHhHHHHHHHHHHHHHHhcccccccCCCCcCCCcCcHHHHHHHHhcCCCceEEEEEEeCCCcc
Confidence 999999999999999999999999999999999874 479999999999999999999999999999999999
Q ss_pred ChHhHHHHHHHHHHhccCccccccc
Q 004356 230 CLEETLSTLDYAHRAKNIKNKPEIN 254 (759)
Q Consensus 230 ~~eETlsTL~fA~rak~Ikn~p~vN 254 (759)
+++||++||+||.||++|+|.|++|
T Consensus 332 ~~~eTl~tL~fa~~~~~i~~~~~~~ 356 (356)
T cd01365 332 NYEETLSTLRYADRAKKIVNVAVVN 356 (356)
T ss_pred cHHHHHHHHHHHHHHhhccCccccC
Confidence 9999999999999999999999986
No 13
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=5.7e-54 Score=494.97 Aligned_cols=255 Identities=46% Similarity=0.654 Sum_probs=232.1
Q ss_pred CCCcHHHHHHHHHHHHhhcC-CeEEEEEEEEEEEcCceeecCCCCCCCccccCCCCCCeeEEecCCCCeEecCcEEEEec
Q 004356 15 DAGVIPRAVKQIFDILEAQH-AEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALMEDGKGGVFVRGLEEEIVT 93 (759)
Q Consensus 15 ~~GIIPRal~~LF~~l~~~~-~~~sV~vS~lEIYnE~v~DLL~~~~~~~~~~~~~~~~l~i~ed~~~gv~V~gL~e~~V~ 93 (759)
+.|||||++..+|..+.... ..|.|.|||+|||+++|+|||.|.. .+.++.+++ ++|++.+.|++++.|.
T Consensus 93 ~~Gvipr~v~~~f~~i~~~~~~~f~i~vs~vely~e~v~dl~~~~~--------~~~~i~~~e-~~g~it~~glte~tv~ 163 (913)
T KOG0244|consen 93 TVGVIPRAVSTLFTRIGKTESFVFRITVSFVELYNEEVLDLLKPSR--------LKANIKLRE-PKGEITIRGLTEKTVR 163 (913)
T ss_pred cCCcCcchHHHHHHHHHhhhccceeeeeeeeeccchhhhhhcChhh--------hhhceeccc-cCCceEEEeehHHHHH
Confidence 36999999999999998753 4899999999999999999998543 234577887 8899999999999999
Q ss_pred CHHHHHHHHHhchhccccccccccCCCCCcceEEEEEEEEeecCCCCCcceEEeeeccccccCCCcccCCCCchhhHHHH
Q 004356 94 TADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSENISRSGAREGRAREA 173 (759)
Q Consensus 94 s~~e~~~lL~~G~~~R~~~~T~~N~~SSRSH~IftI~v~~~~~~~~~~~~~~~skL~lVDLAGSEr~~ks~a~g~r~kEa 173 (759)
+..++...|..|...|++++|.||..|||||+||+|++.+..... .....++||+|||||||||.++++++|+|++||
T Consensus 164 ~~~q~~~~L~~g~~~RtvasTnMN~qssRshAifti~lkq~kk~~--~~s~~~sKlhlVDLAGSER~kkT~a~gdrlKEg 241 (913)
T KOG0244|consen 164 MKLQLLSRLEKGSLERTVASTNMNAQSSRSHAIFTITLKQRKKLS--KRSSFCSKLHLVDLAGSERVKKTKAEGDRLKEG 241 (913)
T ss_pred HHHHHHHHHHhchHHHHHHHHhcchhhhhhhHHHHHHHHHHHHhh--ccchhhhhhheeeccccccccccccchhhhhhc
Confidence 999999999999999999999999999999999999997643322 222457999999999999999999999999999
Q ss_pred HHhhhhHHHHHHHHHHHhhCCC--CCCCCCCccccccccccCCCceeeEEeecCCCCCChHhHHHHHHHHHHhccCcccc
Q 004356 174 GEINKSLLTLGRVINALVEHSG--HVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLSTLDYAHRAKNIKNKP 251 (759)
Q Consensus 174 ~~INkSLlaLg~VI~aL~~~~~--hIPYRdSKLTrLLqdsLGGnskT~mIatVSP~~~~~eETlsTL~fA~rak~Ikn~p 251 (759)
.+||.+|++||+||+||.+... |||||||||||||||+||||++|+|||||||+..|.+||++||+||.||++|+|+|
T Consensus 242 InIN~gLL~LgnVIsaLg~~kk~~~vpyRdSkltrlLQdslgGns~tlmiaCiSpadsn~~EtlnTl~ya~Rak~iknk~ 321 (913)
T KOG0244|consen 242 ININGGLLALGNVISALGEAKKGGEVPYRDSKLTRLLQDSLGGNSDTLMIACISPADSNAQETLNTLRYADRAKQIKNKP 321 (913)
T ss_pred cCcchHHHHHHHHHHHHHhhhcCCcccchHHHHHHHHHHHhcCCcceeeeeecChhhhhhhhHHHHHHHhhHHHHhcccc
Confidence 9999999999999999998754 99999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHH
Q 004356 252 EINQKMMKSAMIKDLYSEIDRLKQEVYAAR 281 (759)
Q Consensus 252 ~vN~~~~~~~li~~l~~Ei~~Lk~el~~~r 281 (759)
.+|.++ ....+..+..+|+.|+.++...+
T Consensus 322 vvN~d~-~~~~~~~lK~ql~~l~~ell~~~ 350 (913)
T KOG0244|consen 322 VVNQDP-KSFEMLKLKAQLEPLQVELLSKA 350 (913)
T ss_pred cccccH-HHHHHHHHHHHHHHHHHHHHhhc
Confidence 999964 77888889999999999887765
No 14
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=3.7e-54 Score=468.89 Aligned_cols=237 Identities=47% Similarity=0.719 Sum_probs=218.9
Q ss_pred CCCCCCCCCC--CCCCCCcHHHHHHHHHHHHhhc-CCeEEEEEEEEEEEcCceeecCCCCCCCccccCCCCCCeeEEecC
Q 004356 2 EGGARKKNGE--FPSDAGVIPRAVKQIFDILEAQ-HAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALMEDG 78 (759)
Q Consensus 2 ~G~~~~~~g~--~~~~~GIIPRal~~LF~~l~~~-~~~~sV~vS~lEIYnE~v~DLL~~~~~~~~~~~~~~~~l~i~ed~ 78 (759)
+|++++..|. .+.++|||||++++||+.+... +..|.|+|||+|||||.|+|||++.. .+++.+++++
T Consensus 93 SGKTyTm~G~~~~~~~~Glipr~~~~Lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~---------~~~l~i~~~~ 163 (333)
T cd01371 93 TGKTFTMEGVREPPELRGIIPNSFAHIFGHIAKAENVQFLVRVSYLEIYNEEVRDLLGKDQ---------KKKLELKERP 163 (333)
T ss_pred CCCcEeecCCCCcccccchHHHHHHHHHHHHhhccCccEEEEEEEEEeeCCeeeeCCCCCC---------CCceeEEEcC
Confidence 4666666664 2359999999999999999765 36899999999999999999998653 3578999999
Q ss_pred CCCeEecCcEEEEecCHHHHHHHHHhchhccccccccccCCCCCcceEEEEEEEEeecCCCCCcceEEeeeccccccCCC
Q 004356 79 KGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSE 158 (759)
Q Consensus 79 ~~gv~V~gL~e~~V~s~~e~~~lL~~G~~~R~~~~T~~N~~SSRSH~IftI~v~~~~~~~~~~~~~~~skL~lVDLAGSE 158 (759)
.+|++|.|++++.|.|++++..+|..|.++|++++|.+|..|||||+||+|+|.+......+...+..|+|+||||||||
T Consensus 164 ~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~L~~VDLAGsE 243 (333)
T cd01371 164 DRGVYVKDLSMFVVKNAEEMDKLMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEKGEDGENHIRVGKLNLVDLAGSE 243 (333)
T ss_pred CCCEEeCCCEEEEeCCHHHHHHHHHHHHhhCccccccccCCCCCCcEEEEEEEEEEeccCCCCCcEEEEEEEEEECCCCC
Confidence 99999999999999999999999999999999999999999999999999999877655545667889999999999999
Q ss_pred cccCCCCchhhHHHHHHhhhhHHHHHHHHHHHhhCCC-CCCCCCCccccccccccCCCceeeEEeecCCCCCChHhHHHH
Q 004356 159 NISRSGAREGRAREAGEINKSLLTLGRVINALVEHSG-HVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLST 237 (759)
Q Consensus 159 r~~ks~a~g~r~kEa~~INkSLlaLg~VI~aL~~~~~-hIPYRdSKLTrLLqdsLGGnskT~mIatVSP~~~~~eETlsT 237 (759)
|..++++.+.+++|+..||+||.+|++||.+|+.+.. |||||+||||+||+|+|||||+|+||+||+|...+++||++|
T Consensus 244 r~~~~~~~~~~~~E~~~iN~sL~~L~~vi~al~~~~~~~ipyR~SkLT~lL~~~l~g~s~t~~I~~vsP~~~~~~eTl~T 323 (333)
T cd01371 244 RQSKTGATGDRLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNSKTVMCANIGPADYNYDETLST 323 (333)
T ss_pred cccccCCchhhhHhHhhhhhHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCCCceEEEEEEeCCccccHHHHHHH
Confidence 9999999999999999999999999999999999876 999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccC
Q 004356 238 LDYAHRAKNI 247 (759)
Q Consensus 238 L~fA~rak~I 247 (759)
|+||.|||+|
T Consensus 324 L~fa~r~r~I 333 (333)
T cd01371 324 LRYANRAKNI 333 (333)
T ss_pred HHHHHHhhcC
Confidence 9999999987
No 15
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=5.5e-54 Score=464.97 Aligned_cols=228 Identities=36% Similarity=0.602 Sum_probs=213.2
Q ss_pred CCCCCCCCCCCCCCCCcHHHHHHHHHHHHhhcCCeEEEEEEEEEEEcCceeecCCCCCCCccccCCCCCCeeEEecCCCC
Q 004356 2 EGGARKKNGEFPSDAGVIPRAVKQIFDILEAQHAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALMEDGKGG 81 (759)
Q Consensus 2 ~G~~~~~~g~~~~~~GIIPRal~~LF~~l~~~~~~~sV~vS~lEIYnE~v~DLL~~~~~~~~~~~~~~~~l~i~ed~~~g 81 (759)
+|++++..|. +.++|||||++++||+.++.....|.|++||+|||||.|+|||++. +..+.|++++.++
T Consensus 92 SGKTyTm~G~-~~~~Glipr~~~~Lf~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~----------~~~l~i~~~~~~~ 160 (319)
T cd01376 92 AGKTHTMLGD-PNEPGLIPRTLSDLLRMGRKQAWTGAFSMSYYEIYNEKVYDLLEPA----------KKELPIREDKDGN 160 (319)
T ss_pred CCCcEEEeCC-cCccchHHHHHHHHHHHHhhccccceEEEEEEEEECCEeeEccCCC----------CCCceEEEcCCCC
Confidence 4666666665 6699999999999999998877899999999999999999999864 2468899999999
Q ss_pred eEecCcEEEEecCHHHHHHHHHhchhccccccccccCCCCCcceEEEEEEEEeecCCCCCcceEEeeeccccccCCCccc
Q 004356 82 VFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSENIS 161 (759)
Q Consensus 82 v~V~gL~e~~V~s~~e~~~lL~~G~~~R~~~~T~~N~~SSRSH~IftI~v~~~~~~~~~~~~~~~skL~lVDLAGSEr~~ 161 (759)
++|.|++++.|.|++|+..+|..|..+|.+++|.+|..|||||+||+|.|.+.... ....|+|+||||||||+..
T Consensus 161 ~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~-----~~~~s~l~~VDLAGsE~~~ 235 (319)
T cd01376 161 ILIVGLTSKPIKSMAEFEEAYIPASKNRTVAATKLNDNSSRSHAVLRIKVTQPASN-----IQLEGKLNLIDLAGSEDNR 235 (319)
T ss_pred EEeeCCEEEEeCCHHHHHHHHHHHHhhhccccCcCCCccCCCeEEEEEEEEEECCC-----ceEEEEEEEEECCCCCccc
Confidence 99999999999999999999999999999999999999999999999999875322 2578999999999999999
Q ss_pred CCCCchhhHHHHHHhhhhHHHHHHHHHHHhhCCCCCCCCCCccccccccccCCCceeeEEeecCCCCCChHhHHHHHHHH
Q 004356 162 RSGAREGRAREAGEINKSLLTLGRVINALVEHSGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLSTLDYA 241 (759)
Q Consensus 162 ks~a~g~r~kEa~~INkSLlaLg~VI~aL~~~~~hIPYRdSKLTrLLqdsLGGnskT~mIatVSP~~~~~eETlsTL~fA 241 (759)
++++.|.+++|+..||+||++||+||.+|..+..|||||||+||+||+|+|||||+|+||+||||...+++||++||+||
T Consensus 236 ~~~~~g~~~~e~~~iN~Sl~~L~~vi~aL~~~~~~ipyr~S~LT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL~fa 315 (319)
T cd01376 236 RTGNEGIRLKESAAINSSLFVLSKVVDALNKGLPRIPYRESKLTRLLQDSLGGGSRCIMVANIAPERSFYQDTLSTLNFA 315 (319)
T ss_pred ccCCccchhhhhhhhhhhHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHhcCCCccEEEEEEeCCchhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhc
Q 004356 242 HRAK 245 (759)
Q Consensus 242 ~rak 245 (759)
.|||
T Consensus 316 ~r~~ 319 (319)
T cd01376 316 SRSK 319 (319)
T ss_pred HhhC
Confidence 9986
No 16
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=5.5e-54 Score=465.54 Aligned_cols=226 Identities=42% Similarity=0.624 Sum_probs=210.3
Q ss_pred CCCCCCCCCCCCCCCCcHHHHHHHHHHHHhhcCCeEEEEEEEEEEEcCceeecCCCCCCCccccCCCCCCeeEEecCCCC
Q 004356 2 EGGARKKNGEFPSDAGVIPRAVKQIFDILEAQHAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALMEDGKGG 81 (759)
Q Consensus 2 ~G~~~~~~g~~~~~~GIIPRal~~LF~~l~~~~~~~sV~vS~lEIYnE~v~DLL~~~~~~~~~~~~~~~~l~i~ed~~~g 81 (759)
+|++++..|+ +.++|||||++++||+.++....+|+|+|||+|||||.|+|||++. +++.+++++.++
T Consensus 96 SGKTyTm~G~-~~~~Glipr~~~~lf~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~-----------~~l~i~~~~~~~ 163 (322)
T cd01367 96 SGKTYTMLGD-ENQEGLYALAARDIFRLLAQPNDDLGVTVSFFEIYGGKLFDLLNDR-----------KRLSVLEDGKGN 163 (322)
T ss_pred CCCceEecCc-CCcCccHHHHHHHHHHHHhccccccEEEEEEEeeecCchhhhccCc-----------cceeEEEcCCCC
Confidence 4666666665 6899999999999999998877899999999999999999999862 468999999999
Q ss_pred eEecCcEEEEecCHHHHHHHHHhchhccccccccccCCCCCcceEEEEEEEEeecCCCCCcceEEeeeccccccCCCccc
Q 004356 82 VFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSENIS 161 (759)
Q Consensus 82 v~V~gL~e~~V~s~~e~~~lL~~G~~~R~~~~T~~N~~SSRSH~IftI~v~~~~~~~~~~~~~~~skL~lVDLAGSEr~~ 161 (759)
++|.|++++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|+|..... ....|+|+||||||||+..
T Consensus 164 ~~v~~l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~------~~~~s~l~~vDLAGsE~~~ 237 (322)
T cd01367 164 VQIVGLTEKPVTSVDELLELIESGNSLRTTGSTGANDQSSRSHAILQIILKNKKL------NKLLGKLSFIDLAGSERGA 237 (322)
T ss_pred EEeCCCEEEEeCCHHHHHHHHHHHhcccccccCcCCCCcccceEEEEEEEEEecC------CeeEEEEEEeecCCccccc
Confidence 9999999999999999999999999999999999999999999999999986543 3467999999999999998
Q ss_pred CCC-CchhhHHHHHHhhhhHHHHHHHHHHHhhCCCCCCCCCCccccccccccCCCceeeEEeecCCCCCChHhHHHHHHH
Q 004356 162 RSG-AREGRAREAGEINKSLLTLGRVINALVEHSGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLSTLDY 240 (759)
Q Consensus 162 ks~-a~g~r~kEa~~INkSLlaLg~VI~aL~~~~~hIPYRdSKLTrLLqdsLGGnskT~mIatVSP~~~~~eETlsTL~f 240 (759)
.++ ..+.+.+|+..||+||++|++||.+|+.+..||||||||||+||+|+|||||+|+|||||||+..+++||++||+|
T Consensus 238 ~~~~~~~~~~~e~~~IN~SL~~L~~vi~al~~~~~~iPyRdSkLT~lL~~~L~g~~~t~~I~~vsp~~~~~~eTl~tL~f 317 (322)
T cd01367 238 DTSEHDRQTRKEGAEINKSLLALKECIRALASNKAHVPFRGSKLTQVLRDSFIGNSKTVMIATISPSASSCEHTLNTLRY 317 (322)
T ss_pred cccccchhhHHhHhHHhHHHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHhhCCCCeEEEEEEeCCchhhHHHHHHHHHH
Confidence 876 4688999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhc
Q 004356 241 AHRAK 245 (759)
Q Consensus 241 A~rak 245 (759)
|.|+|
T Consensus 318 a~r~k 322 (322)
T cd01367 318 ADRVK 322 (322)
T ss_pred HHhhC
Confidence 99986
No 17
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=1.9e-53 Score=463.59 Aligned_cols=239 Identities=42% Similarity=0.626 Sum_probs=217.8
Q ss_pred CCCCCCCCCCCC--CCCCcHHHHHHHHHHHHhhc-CCeEEEEEEEEEEEcCceeecCCCCCCCccccCCCCCCeeEEecC
Q 004356 2 EGGARKKNGEFP--SDAGVIPRAVKQIFDILEAQ-HAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALMEDG 78 (759)
Q Consensus 2 ~G~~~~~~g~~~--~~~GIIPRal~~LF~~l~~~-~~~~sV~vS~lEIYnE~v~DLL~~~~~~~~~~~~~~~~l~i~ed~ 78 (759)
+|++++..|... .++|||||++.+||..++.. +..|+|++||+|||||.|+|||++.+.. ....+++.+++++
T Consensus 92 SGKTyTm~G~~~~~~~~Glipr~~~~lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~----~~~~~~l~i~e~~ 167 (334)
T cd01375 92 AGKTFTMTGGTESYKDRGLIPRALEQVFREVAMRATKTYTVHVSYLEIYNEQLYDLLGDTPEA----LESLPAVTILEDS 167 (334)
T ss_pred CCCeEEccCCCCcccCCchHHHHHHHHHHHHHhccCcceEEEEEEEEEECCEeecCCCCCccc----cccCCceEEEEcC
Confidence 577777777543 57999999999999999865 4589999999999999999999976421 1234579999999
Q ss_pred CCCeEecCcEEEEecCHHHHHHHHHhchhccccccccccCCCCCcceEEEEEEEEeecCCCCCcceEEeeeccccccCCC
Q 004356 79 KGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSE 158 (759)
Q Consensus 79 ~~gv~V~gL~e~~V~s~~e~~~lL~~G~~~R~~~~T~~N~~SSRSH~IftI~v~~~~~~~~~~~~~~~skL~lVDLAGSE 158 (759)
.++++|.|++++.|.+++|++.+|..|..+|.+++|.+|..|||||+||+|+|.+....+. ...+..|+|+||||||||
T Consensus 168 ~~~~~v~gl~~~~v~s~~e~~~~~~~g~~~R~~~~t~~n~~sSRSH~i~~l~v~~~~~~~~-~~~~~~s~l~~VDLAGsE 246 (334)
T cd01375 168 EQNIHVKGLSLHSATTEEEALNLLFLGETNRTIAETSMNQASSRSHCIFTIHLESRSREAG-SEVVRLSKLNLVDLAGSE 246 (334)
T ss_pred CCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccCcCcCCcCcCeEEEEEEEEEEecCCC-CCceEEEEEEEEECCCCC
Confidence 9999999999999999999999999999999999999999999999999999998754443 345678999999999999
Q ss_pred cccCCCCchhhHHHHHHhhhhHHHHHHHHHHHhhCC-CCCCCCCCccccccccccCCCceeeEEeecCCCCCChHhHHHH
Q 004356 159 NISRSGAREGRAREAGEINKSLLTLGRVINALVEHS-GHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLST 237 (759)
Q Consensus 159 r~~ks~a~g~r~kEa~~INkSLlaLg~VI~aL~~~~-~hIPYRdSKLTrLLqdsLGGnskT~mIatVSP~~~~~eETlsT 237 (759)
+..++++.+.+++|+..||+||++|++||.+|+.+. .||||||||||+||+|+|||||+|+||+||||+..+++||++|
T Consensus 247 r~~~~~~~~~~~~e~~~iN~SL~~L~~vi~~l~~~~~~~ipyRdSkLT~lL~d~Lgg~~~t~~I~~vsp~~~~~~eTl~T 326 (334)
T cd01375 247 RVSKTGVSGQVLKEAKYINKSLSFLEQVINALSEKARTHVPYRNSKLTHVLRDSLGGNCKTVMLATIWVEPSNLDETLST 326 (334)
T ss_pred ccccccCchhhhhhhhhhhhhHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHH
Confidence 999999999999999999999999999999999998 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHhc
Q 004356 238 LDYAHRAK 245 (759)
Q Consensus 238 L~fA~rak 245 (759)
|+||.|++
T Consensus 327 L~fa~r~~ 334 (334)
T cd01375 327 LRFAQRVA 334 (334)
T ss_pred HHHHHhcC
Confidence 99999985
No 18
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=1.8e-53 Score=461.14 Aligned_cols=234 Identities=44% Similarity=0.729 Sum_probs=216.9
Q ss_pred CCCCCCCCCCCCCCCCcHHHHHHHHHHHHhhc-CCeEEEEEEEEEEEcCceeecCCCCCCCccccCCCCCCeeEEecCCC
Q 004356 2 EGGARKKNGEFPSDAGVIPRAVKQIFDILEAQ-HAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALMEDGKG 80 (759)
Q Consensus 2 ~G~~~~~~g~~~~~~GIIPRal~~LF~~l~~~-~~~~sV~vS~lEIYnE~v~DLL~~~~~~~~~~~~~~~~l~i~ed~~~ 80 (759)
+|++++..|. +.++|||||++++||..+... +..|.|+|||+|||||.|+|||+|.+ +++.+++++.+
T Consensus 85 SGKT~T~~G~-~~~~Gli~r~~~~lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~----------~~l~i~~~~~~ 153 (321)
T cd01374 85 SGKTFTMSGD-EQEPGIIPLAVRDIFQRIQDTPDREFLLRVSYLEIYNEKIKDLLSPSP----------QELRIREDPNK 153 (321)
T ss_pred CCCceeccCC-CCCCchHHHHHHHHHHHHhcccCceEEEEEEEEEEEcCEeEEccCCCC----------CCceEEECCCC
Confidence 4666666665 689999999999999999754 55899999999999999999998753 47899999999
Q ss_pred CeEecCcEEEEecCHHHHHHHHHhchhccccccccccCCCCCcceEEEEEEEEeecCCCCCcceEEeeeccccccCCCcc
Q 004356 81 GVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSENI 160 (759)
Q Consensus 81 gv~V~gL~e~~V~s~~e~~~lL~~G~~~R~~~~T~~N~~SSRSH~IftI~v~~~~~~~~~~~~~~~skL~lVDLAGSEr~ 160 (759)
|++|.|++++.|.|+++++.+|..|..+|++++|.+|..|||||+||+|+|.+....+.+......|+|+||||||||+.
T Consensus 154 ~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~l~~vDLAGsE~~ 233 (321)
T cd01374 154 GVVVAGLTEEIVTSPEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGDSESGTVRVSTLNLIDLAGSERA 233 (321)
T ss_pred CEEeCCceEEEeCCHHHHHHHHHHHHhccccccCcCCCccccccEEEEEEEEEEecCCCCCCcEEEEEEEEEECCCCCcc
Confidence 99999999999999999999999999999999999999999999999999998765554455678899999999999999
Q ss_pred cCCCCchhhHHHHHHhhhhHHHHHHHHHHHhhCC--CCCCCCCCccccccccccCCCceeeEEeecCCCCCChHhHHHHH
Q 004356 161 SRSGAREGRAREAGEINKSLLTLGRVINALVEHS--GHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLSTL 238 (759)
Q Consensus 161 ~ks~a~g~r~kEa~~INkSLlaLg~VI~aL~~~~--~hIPYRdSKLTrLLqdsLGGnskT~mIatVSP~~~~~eETlsTL 238 (759)
.+.+ .+.+++|+..||+||++|++||.+|+.+. .|||||+||||+||+|+||||++|+|||||||...+++||++||
T Consensus 234 ~~~~-~~~~~~e~~~iN~Sl~~L~~vi~al~~~~~~~~vpyR~SkLT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL 312 (321)
T cd01374 234 SQTG-AGERRKEGSFINKSLLTLGTVISKLSEGKNSGHIPYRDSKLTRILQPSLSGNARTAIICTISPASSHVEETLNTL 312 (321)
T ss_pred ccCC-CCccccccchhhhHHHHHHHHHHHHHhcCCCCcCCCcCCHHHHHHHHhcCCCceEEEEEEeCCccccHHHHHHHH
Confidence 9999 89999999999999999999999999985 89999999999999999999999999999999999999999999
Q ss_pred HHHHHhccC
Q 004356 239 DYAHRAKNI 247 (759)
Q Consensus 239 ~fA~rak~I 247 (759)
+||.||++|
T Consensus 313 ~~a~r~~~i 321 (321)
T cd01374 313 KFASRAKKV 321 (321)
T ss_pred HHHHHHhcC
Confidence 999999986
No 19
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=3e-53 Score=462.90 Aligned_cols=240 Identities=48% Similarity=0.745 Sum_probs=218.9
Q ss_pred CCCCCCCCCCC-----CCCCCcHHHHHHHHHHHHhhcC--CeEEEEEEEEEEEcCceeecCCCCCCCccccCCCCCCeeE
Q 004356 2 EGGARKKNGEF-----PSDAGVIPRAVKQIFDILEAQH--AEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIAL 74 (759)
Q Consensus 2 ~G~~~~~~g~~-----~~~~GIIPRal~~LF~~l~~~~--~~~sV~vS~lEIYnE~v~DLL~~~~~~~~~~~~~~~~l~i 74 (759)
+|++++.+|.. ..++|||||++++||+.+.... .+|.|.|||+|||||.|+|||++.. ..+.++.+
T Consensus 85 SGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~-------~~~~~l~i 157 (341)
T cd01372 85 SGKTYTMGTAFTASEDEEEVGIIPRAIQHIFKKIDEKKDEPDFQLKVSFLELYNEEVRDLLSPST-------SEKSPIQI 157 (341)
T ss_pred CCCcEEecCCCccccccccCChHHHHHHHHHHHHHhccccceEEEEEEEEEeECCeeecCCCCcc-------cCCCCceE
Confidence 46666666654 5689999999999999998754 5899999999999999999998753 12457999
Q ss_pred EecCCCCeEecCcEEEEecCHHHHHHHHHhchhccccccccccCCCCCcceEEEEEEEEeecCC-------CCCcceEEe
Q 004356 75 MEDGKGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTP-------EGEEMIKCG 147 (759)
Q Consensus 75 ~ed~~~gv~V~gL~e~~V~s~~e~~~lL~~G~~~R~~~~T~~N~~SSRSH~IftI~v~~~~~~~-------~~~~~~~~s 147 (759)
++++.++++|.|++++.|.|++|++.+|..|..+|..++|.+|..|||||+||+|+|.+..... ++......|
T Consensus 158 ~e~~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~~~~~~~~~~~s 237 (341)
T cd01372 158 REDSKGNIIIVGLTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPIAPMSGDDKNSTLTS 237 (341)
T ss_pred EECCCCCEecCCCEEEEECCHHHHHHHHHHHHHhcccccccCCCccCcCcEEEEEEEEEEecCCccccccccCCCceeeE
Confidence 9999999999999999999999999999999999999999999999999999999998766531 123456789
Q ss_pred eeccccccCCCcccCCCCchhhHHHHHHhhhhHHHHHHHHHHHhhCC---CCCCCCCCccccccccccCCCceeeEEeec
Q 004356 148 KLNLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVINALVEHS---GHVPYRDSKLTRLLRDSLGGKTKTCIIATV 224 (759)
Q Consensus 148 kL~lVDLAGSEr~~ks~a~g~r~kEa~~INkSLlaLg~VI~aL~~~~---~hIPYRdSKLTrLLqdsLGGnskT~mIatV 224 (759)
+|+||||||||+..++++.+.+++|+..||+||++|++||.+|+.+. .|||||+||||+||+|+||||++|+||+||
T Consensus 238 ~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~aL~~vi~al~~~~~~~~~ipyR~S~LT~lL~~~Lgg~s~t~~I~~v 317 (341)
T cd01372 238 KFHFVDLAGSERLKKTGATGDRLKEGISINSGLLALGNVISALGDESKKGSHVPYRDSKLTRLLQDSLGGNSHTLMIACV 317 (341)
T ss_pred EEEEEECCCCcccccccCchhHhHHHHHHhHHHHHHHHHHHHHHhcCCCCCCCCCcccHHHHHHHHhcCCCceEEEEEEe
Confidence 99999999999999999999999999999999999999999999976 699999999999999999999999999999
Q ss_pred CCCCCChHhHHHHHHHHHHhccCc
Q 004356 225 SPSIHCLEETLSTLDYAHRAKNIK 248 (759)
Q Consensus 225 SP~~~~~eETlsTL~fA~rak~Ik 248 (759)
||+..+++||++||+||.||++||
T Consensus 318 sp~~~~~~eTl~tL~~a~~~~~ik 341 (341)
T cd01372 318 SPADSNFEETLNTLKYANRARNIK 341 (341)
T ss_pred CCChhhHHHHHHHHHHHHHhccCC
Confidence 999999999999999999999986
No 20
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=5.9e-53 Score=457.86 Aligned_cols=233 Identities=45% Similarity=0.696 Sum_probs=214.2
Q ss_pred CCCCCCCCCCCC--CCCCcHHHHHHHHHHHHhhc--CCeEEEEEEEEEEEcCceeecCCCCCCCccccCCCCCCeeEEec
Q 004356 2 EGGARKKNGEFP--SDAGVIPRAVKQIFDILEAQ--HAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALMED 77 (759)
Q Consensus 2 ~G~~~~~~g~~~--~~~GIIPRal~~LF~~l~~~--~~~~sV~vS~lEIYnE~v~DLL~~~~~~~~~~~~~~~~l~i~ed 77 (759)
+|++++..|... .++|||||++++||+.+... +.+|.|++||+|||||.++|||++.. ..+.++++
T Consensus 88 SGKT~Tm~G~~~~~~~~Giipr~~~~Lf~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~----------~~l~i~~~ 157 (325)
T cd01369 88 SGKTYTMEGPPGDPELKGIIPRIVHDIFEHISSMDENLEFHVKVSYLEIYMEKIRDLLDVSK----------DNLQVHED 157 (325)
T ss_pred CCceEEecCCCCccccCChHHHHHHHHHHHHhhccCCceEEEEEEEEEEECCChhhcccCcc----------CCceEEEc
Confidence 466666666533 58999999999999999764 34899999999999999999998652 46889999
Q ss_pred CCCCeEecCcEEEEecCHHHHHHHHHhchhccccccccccCCCCCcceEEEEEEEEeecCCCCCcceEEeeeccccccCC
Q 004356 78 GKGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGS 157 (759)
Q Consensus 78 ~~~gv~V~gL~e~~V~s~~e~~~lL~~G~~~R~~~~T~~N~~SSRSH~IftI~v~~~~~~~~~~~~~~~skL~lVDLAGS 157 (759)
+.+|++|.|++++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|+|.+..... .....|+|+|||||||
T Consensus 158 ~~~~~~v~gl~~~~v~s~~e~~~~i~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~---~~~~~s~l~~VDLAGs 234 (325)
T cd01369 158 KNRGVYVKGLTERFVSSPEEVLEVINEGKSNRAVASTNMNEESSRSHSIFLITLKQENVET---GSKKRGKLFLVDLAGS 234 (325)
T ss_pred CCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccCcCCCccccccEEEEEEEEEEecCC---CCEEEEEEEEEECCCC
Confidence 9999999999999999999999999999999999999999999999999999998765332 2357899999999999
Q ss_pred CcccCCCCchhhHHHHHHhhhhHHHHHHHHHHHhhCC-CCCCCCCCccccccccccCCCceeeEEeecCCCCCChHhHHH
Q 004356 158 ENISRSGAREGRAREAGEINKSLLTLGRVINALVEHS-GHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLS 236 (759)
Q Consensus 158 Er~~ks~a~g~r~kEa~~INkSLlaLg~VI~aL~~~~-~hIPYRdSKLTrLLqdsLGGnskT~mIatVSP~~~~~eETls 236 (759)
|+..++++.|.+++|+..||+||++|++||.+|+.+. .||||||||||+||+|+|||+|+|+||+||||+..+++||++
T Consensus 235 E~~~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~~~~~vpyR~S~LT~lL~~~L~g~s~t~~I~~vsp~~~~~~eTl~ 314 (325)
T cd01369 235 EKVSKTGAEGQTLEEAKKINKSLSALGNVINALTDGKSTHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSYNESETLS 314 (325)
T ss_pred CcccccCCcchhHHHHHHHhHHHHHHHHHHHHHHcCCCCcCCCccCHHHHHHHHhcCCCCeEEEEEEeCCccccHHHHHH
Confidence 9999999999999999999999999999999999987 899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccC
Q 004356 237 TLDYAHRAKNI 247 (759)
Q Consensus 237 TL~fA~rak~I 247 (759)
||+||.|||+|
T Consensus 315 TL~~a~r~~~i 325 (325)
T cd01369 315 TLRFGARAKTI 325 (325)
T ss_pred HHHHHHHhhcC
Confidence 99999999987
No 21
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=5e-52 Score=466.83 Aligned_cols=215 Identities=39% Similarity=0.575 Sum_probs=196.6
Q ss_pred EEEEEEEEEEEcCceeecCCCCCCCccccCCCCC-CeeEEecCCCCeEecCcEEEEecCHHHHHHHHHhchhcccccccc
Q 004356 37 YSMKVTFLELYNEEISDLLALEETSKFVDDKSKK-PIALMEDGKGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETL 115 (759)
Q Consensus 37 ~sV~vS~lEIYnE~v~DLL~~~~~~~~~~~~~~~-~l~i~ed~~~gv~V~gL~e~~V~s~~e~~~lL~~G~~~R~~~~T~ 115 (759)
|+|+|||+|||||-|||||.+.+.. ..+. ...+++|.++.+||.|+++|.|.|.+|++.+|..|.++|++++|.
T Consensus 226 ysV~VSf~EIYN~~iYDLLe~~s~q-----~~~~~~~ll~~d~~~~~~Vkgl~~V~VssseEA~~l~~lGqk~r~~asT~ 300 (809)
T KOG0247|consen 226 YSVFVSFVEIYNNYIYDLLEDASFQ-----GKLQKLKLLREDTNGNMYVKGLTEVEVSSSEEALELFQLGQKRRRVASTK 300 (809)
T ss_pred EEEEeeHHHHHHHHHHHhhcccccc-----chhhhhhhhhhccCCCeeeccccEEEeccHHHHHHHHHHHHhhhhhhhee
Confidence 8899999999999999999976421 1122 356789999999999999999999999999999999999999999
Q ss_pred ccCCCCCcceEEEEEEEEeecCCCCCcceEEeeeccccccCCCcccCCCCchhhHHHHHHhhhhHHHHHHHHHHHhhC--
Q 004356 116 LNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVINALVEH-- 193 (759)
Q Consensus 116 ~N~~SSRSH~IftI~v~~~~~~~~~~~~~~~skL~lVDLAGSEr~~ks~a~g~r~kEa~~INkSLlaLg~VI~aL~~~-- 193 (759)
+|..|||||+||+|.|.+....+ +...++.|.|.|||||||||..++++.|.|++||++||.||+|||+||.+|..+
T Consensus 301 lN~~SSRSHsVFtIkl~q~~~~~-~s~~i~vSqlsLvDLAGSERt~rtq~sG~RLrEagNINtSLmTLg~Cie~LR~nqk 379 (809)
T KOG0247|consen 301 LNANSSRSHSVFTIKLVQAPRSQ-DSNQITVSQLSLVDLAGSERTNRTQNSGERLREAGNINTSLMTLRRCIDVLRENQK 379 (809)
T ss_pred ccccccccceeEEEEeeeccccc-ccCceeEEeeeeeecccchhcccccchhHHHHhhccccHHHHHHHHHHHHHHHHhh
Confidence 99999999999999998765543 456789999999999999999999999999999999999999999999999875
Q ss_pred ---CCCCCCCCCccccccccccCCCceeeEEeecCCCCCChHhHHHHHHHHHHhccCcccccccccc
Q 004356 194 ---SGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLSTLDYAHRAKNIKNKPEINQKM 257 (759)
Q Consensus 194 ---~~hIPYRdSKLTrLLqdsLGGnskT~mIatVSP~~~~~eETlsTL~fA~rak~Ikn~p~vN~~~ 257 (759)
..+|||||||||++++.+|.|+.+.+||+||+|.+.+|+|+++.|+||.-|..|.+.+.++..+
T Consensus 380 ~ks~~~VPyRdSKLThlfq~~f~G~gki~MIV~vnp~~e~YdEnl~vlkFaeiaq~v~v~~~~~~~~ 446 (809)
T KOG0247|consen 380 SKSQKIVPYRDSKLTHLFKNYFDGKGKIRMIVCVNPKAEDYDENLNVLKFAEIAQEVEVARPVIKKQ 446 (809)
T ss_pred hhccccCcchHHHHHHHHHHhcCCCCcEEEEEecCCchhhHHHHHHHHHHHHhcccccccCcccccC
Confidence 3689999999999999999999999999999999999999999999999999999887776554
No 22
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=5.7e-52 Score=450.75 Aligned_cols=238 Identities=43% Similarity=0.662 Sum_probs=219.0
Q ss_pred CCCCCCCCCCCCCCCCcHHHHHHHHHHHHhhc---CCeEEEEEEEEEEEcCceeecCCCCCCCccccCCCCCCeeEEecC
Q 004356 2 EGGARKKNGEFPSDAGVIPRAVKQIFDILEAQ---HAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALMEDG 78 (759)
Q Consensus 2 ~G~~~~~~g~~~~~~GIIPRal~~LF~~l~~~---~~~~sV~vS~lEIYnE~v~DLL~~~~~~~~~~~~~~~~l~i~ed~ 78 (759)
+|++++..|. +.++|||||++++||..+... +..|.|++||+|||||.|+|||++.+ ..++++.|++++
T Consensus 89 SGKT~tl~G~-~~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~-------~~~~~l~i~~~~ 160 (329)
T cd01366 89 SGKTYTMEGP-PENPGIIPRALEQLFNTAEELKEKGWSYTITASMLEIYNETIRDLLATKP-------APKKKLEIKHDS 160 (329)
T ss_pred CCCcEEecCC-CCCCCcHHHHHHHHHHHHHhhhccCceEEEEEEEEEEECCEeEECCCCCc-------CCCCceEEEECC
Confidence 4565555665 689999999999999999764 46899999999999999999998753 134689999999
Q ss_pred CCCeEecCcEEEEecCHHHHHHHHHhchhccccccccccCCCCCcceEEEEEEEEeecCCCCCcceEEeeeccccccCCC
Q 004356 79 KGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSE 158 (759)
Q Consensus 79 ~~gv~V~gL~e~~V~s~~e~~~lL~~G~~~R~~~~T~~N~~SSRSH~IftI~v~~~~~~~~~~~~~~~skL~lVDLAGSE 158 (759)
.++++|.|++++.|.|++|+..+|..|..+|.+++|.+|..|||||+||+|+|...... ......|+|+||||||||
T Consensus 161 ~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~---~~~~~~s~l~~VDLaGsE 237 (329)
T cd01366 161 KGETYVTNLTEVPVSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQ---TGEQTRGKLNLVDLAGSE 237 (329)
T ss_pred CCCEEecCCEEEEeCCHHHHHHHHHHHHhhcccccccccCCCCCccEEEEEEEEEEcCC---CCcEEEEEEEEEECCCCc
Confidence 99999999999999999999999999999999999999999999999999999875433 234578999999999999
Q ss_pred cccCCCCchhhHHHHHHhhhhHHHHHHHHHHHhhCCCCCCCCCCccccccccccCCCceeeEEeecCCCCCChHhHHHHH
Q 004356 159 NISRSGAREGRAREAGEINKSLLTLGRVINALVEHSGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLSTL 238 (759)
Q Consensus 159 r~~ks~a~g~r~kEa~~INkSLlaLg~VI~aL~~~~~hIPYRdSKLTrLLqdsLGGnskT~mIatVSP~~~~~eETlsTL 238 (759)
+..+.++.+.+++|+..||+||++|++||.+|+.+..|||||+||||+||+|+|||+++|+||+||||...+++||++||
T Consensus 238 ~~~~~~~~~~~~~e~~~in~Sl~~L~~vl~~l~~~~~~ipyr~S~LT~lL~~~l~g~~~t~~i~~vsp~~~~~~etl~tL 317 (329)
T cd01366 238 RLKKSGATGDRLKEAQAINKSLSALGDVISALRSKDSHVPYRNSKLTYLLQDSLGGNSKTLMFVNISPLESNLSETLCSL 317 (329)
T ss_pred ccccccccchhhHhHhhhhhHHHHHHHHHHHHhcCCCcCCCcccHhHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCccc
Q 004356 239 DYAHRAKNIKNK 250 (759)
Q Consensus 239 ~fA~rak~Ikn~ 250 (759)
+||.||++|++.
T Consensus 318 ~~a~~~~~i~~~ 329 (329)
T cd01366 318 RFASRVRSVELG 329 (329)
T ss_pred HHHHHhhcccCC
Confidence 999999999873
No 23
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=9.2e-52 Score=449.53 Aligned_cols=239 Identities=49% Similarity=0.781 Sum_probs=215.3
Q ss_pred CCCCCCCCC-CCCCCCcHHHHHHHHHHHHhhcC----CeEEEEEEEEEEEcCceeecCCCCCCCccccCCCCCCeeEEec
Q 004356 3 GGARKKNGE-FPSDAGVIPRAVKQIFDILEAQH----AEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALMED 77 (759)
Q Consensus 3 G~~~~~~g~-~~~~~GIIPRal~~LF~~l~~~~----~~~sV~vS~lEIYnE~v~DLL~~~~~~~~~~~~~~~~l~i~ed 77 (759)
|++++.+|. .+.++|||||++++||..++... ..|.|+|||+|||||.|+|||+|.. ....+++.++++
T Consensus 87 GKT~Tm~G~~~~~~~Gli~~~~~~lf~~~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~------~~~~~~l~i~~~ 160 (335)
T PF00225_consen 87 GKTYTMFGSNDPSEPGLIPRALRDLFSQIEERKEKSGYEFSVSVSYLEIYNEKVYDLLSPNN------SKSRKPLKIRED 160 (335)
T ss_dssp SHHHHHTBSTSTTTBSHHHHHHHHHHHHHHHHTTTSTEEEEEEEEEEEEETTEEEETTSTTS------SSTTSEBEEEEE
T ss_pred cccccccccccccccchhhhHHHHHhhhhccccccccccccccccchhhhhhhhhhhcCccc------cccccccceeec
Confidence 444444554 48899999999999999998753 3799999999999999999999864 112457999999
Q ss_pred CCCC-eEecCcEEEEecCHHHHHHHHHhchhccccccccccCCCCCcceEEEEEEEEeecCCCCC-cceEEeeecccccc
Q 004356 78 GKGG-VFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGE-EMIKCGKLNLVDLA 155 (759)
Q Consensus 78 ~~~g-v~V~gL~e~~V~s~~e~~~lL~~G~~~R~~~~T~~N~~SSRSH~IftI~v~~~~~~~~~~-~~~~~skL~lVDLA 155 (759)
+..| ++|+|++++.|.++++++.+|..|..+|+++.|.+|..|||||+||+|+|.+....+... .....|+|+|||||
T Consensus 161 ~~~g~~~i~~l~~~~v~s~~~~~~~l~~~~~~R~~~~t~~n~~sSRSH~i~~i~v~~~~~~~~~~~~~~~~s~l~~vDLa 240 (335)
T PF00225_consen 161 SNKGSVYIKGLTEVEVKSAEEALQLLKKGQKNRRTASTKMNARSSRSHAIFTIHVEQKDRDPSDDEESVKHSRLTFVDLA 240 (335)
T ss_dssp TTTEEEEETTSEEEEESSHHHHHHHHHHHHHHHTCTSSSCTHHGGGSEEEEEEEEEEEETTTTTEEEEEEEEEEEEEEEE
T ss_pred cccccceeeccccccccccccccccccchhhccccccccccccccccccccccccccccccccccccceeecceeeeecc
Confidence 9876 999999999999999999999999999999999999999999999999999887665443 23578999999999
Q ss_pred CCCcccCCCCc-hhhHHHHHHhhhhHHHHHHHHHHHhhC--CCCCCCCCCccccccccccCCCceeeEEeecCCCCCChH
Q 004356 156 GSENISRSGAR-EGRAREAGEINKSLLTLGRVINALVEH--SGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLE 232 (759)
Q Consensus 156 GSEr~~ks~a~-g~r~kEa~~INkSLlaLg~VI~aL~~~--~~hIPYRdSKLTrLLqdsLGGnskT~mIatVSP~~~~~e 232 (759)
|||+..+.++. +.+.+|++.||+||.+|++||.+|+.+ ..|||||+||||+||+|+|||||+|+||+||||...+++
T Consensus 241 GsE~~~~~~~~~~~~~~e~~~in~Sl~~L~~vi~~L~~~~~~~~vpyr~SkLT~lL~d~l~g~s~t~~I~~vsp~~~~~~ 320 (335)
T PF00225_consen 241 GSERLKKSGASDGQRLKESSNINKSLSALGNVIRALAQGSKQSHVPYRDSKLTRLLKDSLGGNSKTILIVCVSPSSEDYE 320 (335)
T ss_dssp ESTGGCGCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSTSSSCGGGSHHHHHTGGGTSSSSEEEEEEEE-SBGGGHH
T ss_pred cccccccccccccccccccceecchhhhhhhhHhhhhccccchhhhhhcccccceecccccccccceeEEEcCCccccHH
Confidence 99999999974 888999999999999999999999999 899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhccC
Q 004356 233 ETLSTLDYAHRAKNI 247 (759)
Q Consensus 233 ETlsTL~fA~rak~I 247 (759)
||++||+||.++|+|
T Consensus 321 eTl~tL~fa~~~~~I 335 (335)
T PF00225_consen 321 ETLSTLRFASRAREI 335 (335)
T ss_dssp HHHHHHHHHHHHTTE
T ss_pred HHHHHHHHHHHHcCC
Confidence 999999999999987
No 24
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=4.9e-51 Score=444.20 Aligned_cols=241 Identities=52% Similarity=0.800 Sum_probs=221.7
Q ss_pred CCCCCCCCCCCCCCCCcHHHHHHHHHHHHhhc--CCeEEEEEEEEEEEcCceeecCCCCCCCccccCCCCCCeeEEecCC
Q 004356 2 EGGARKKNGEFPSDAGVIPRAVKQIFDILEAQ--HAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALMEDGK 79 (759)
Q Consensus 2 ~G~~~~~~g~~~~~~GIIPRal~~LF~~l~~~--~~~~sV~vS~lEIYnE~v~DLL~~~~~~~~~~~~~~~~l~i~ed~~ 79 (759)
+|++++..|. +.++|||||++++||+.+... +..|+|+|||+|||||.|+|||++. ++++.+++++.
T Consensus 91 SGKT~tl~G~-~~~~Gli~~~~~~Lf~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL~~~----------~~~l~i~~~~~ 159 (335)
T smart00129 91 SGKTYTMSGT-PDSPGIIPRALKDLFEKIDKLEEGWQFQVKVSYLEIYNEKIRDLLNPS----------PKKLEIREDKK 159 (335)
T ss_pred CCCceEecCC-CCCCCHHHHHHHHHHHHhhhcccCceEEEEEEEEEEECCEEEECcCCC----------CCCcEEEECCC
Confidence 4665555664 678999999999999999764 4589999999999999999999864 35799999999
Q ss_pred CCeEecCcEEEEecCHHHHHHHHHhchhccccccccccCCCCCcceEEEEEEEEeecCCCCCcceEEeeeccccccCCCc
Q 004356 80 GGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSEN 159 (759)
Q Consensus 80 ~gv~V~gL~e~~V~s~~e~~~lL~~G~~~R~~~~T~~N~~SSRSH~IftI~v~~~~~~~~~~~~~~~skL~lVDLAGSEr 159 (759)
++++|.|++++.|.|++++..+|..|..+|.+++|.+|..|||||+||+|+|.+..... .......|+|+||||||||+
T Consensus 160 ~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRsH~i~~l~v~~~~~~~-~~~~~~~s~l~~VDLaGse~ 238 (335)
T smart00129 160 GGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVESKIKNS-SSGSGKASKLNLVDLAGSER 238 (335)
T ss_pred CCEEecCCEEEEeCCHHHHHHHHHHHHhccccccCCCCCCCCcceEEEEEEEEEEecCC-CCCCEEEEEEEEEECCCCCc
Confidence 99999999999999999999999999999999999999999999999999998664333 33456889999999999999
Q ss_pred ccCCCCchhhHHHHHHhhhhHHHHHHHHHHHhh--CCCCCCCCCCccccccccccCCCceeeEEeecCCCCCChHhHHHH
Q 004356 160 ISRSGAREGRAREAGEINKSLLTLGRVINALVE--HSGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLST 237 (759)
Q Consensus 160 ~~ks~a~g~r~kEa~~INkSLlaLg~VI~aL~~--~~~hIPYRdSKLTrLLqdsLGGnskT~mIatVSP~~~~~eETlsT 237 (759)
..+.++.+.+++|+..||+||.+|++||.+|++ +..|||||+|+||+||+|+|||+++|+||+||||...+++||++|
T Consensus 239 ~~~~~~~~~~~~e~~~in~sl~~L~~~l~~l~~~~~~~~ip~r~S~LT~lL~~~L~g~~~~~~i~~vsp~~~~~~eTl~t 318 (335)
T smart00129 239 ASKTGAEGDRLKEAGNINKSLSALGNVINALADGQKSRHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSLSNLEETLST 318 (335)
T ss_pred cccccChhHHHHhhchhhhHHHHHHHHHHHHHhcCCCCCCCCcCcHhHHHHHHHcCCCCeEEEEEEcCCCccchHHHHHH
Confidence 999999999999999999999999999999999 567999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCccccccc
Q 004356 238 LDYAHRAKNIKNKPEIN 254 (759)
Q Consensus 238 L~fA~rak~Ikn~p~vN 254 (759)
|+||.++++|+|+|.+|
T Consensus 319 L~~a~~~~~i~~~p~~~ 335 (335)
T smart00129 319 LRFASRAKEIKNKAIVN 335 (335)
T ss_pred HHHHHHHhhcccCCCcC
Confidence 99999999999999875
No 25
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=100.00 E-value=1.4e-50 Score=469.91 Aligned_cols=244 Identities=40% Similarity=0.597 Sum_probs=223.6
Q ss_pred CCCCCCCCCCCCCCCCcHHHHHHHHHHHHhhc--CCeEEEEEEEEEEEcCceeecCCCCCCCccccCCCCCCeeEEecCC
Q 004356 2 EGGARKKNGEFPSDAGVIPRAVKQIFDILEAQ--HAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALMEDGK 79 (759)
Q Consensus 2 ~G~~~~~~g~~~~~~GIIPRal~~LF~~l~~~--~~~~sV~vS~lEIYnE~v~DLL~~~~~~~~~~~~~~~~l~i~ed~~ 79 (759)
+|+++|+.|..+.++|||||++.+||..+... ++.|.+.+||+|||||.|+|||++.. ....+.|+.++.
T Consensus 404 SGKTyTM~G~~~~~~Giipral~~lF~~~~~~~~g~~y~~~~s~~EIYNe~i~DlL~~~~--------~~~k~~I~~~~~ 475 (670)
T KOG0239|consen 404 SGKTYTMSGPTPEDPGIIPRALEKLFRTITSLKSGWKYDKTVSMLEIYNEAIRDLLSDES--------YVGKLEIVDDAE 475 (670)
T ss_pred CCccccccCCCcccCCccHHHHHHHHHHHHhhccCceEEeeeehhHHHHHHHHHhccccc--------cccceeEEEcCC
Confidence 56677777767899999999999999998754 57999999999999999999998753 245789999999
Q ss_pred CCeEecCcEEEEecCHHHHHHHHHhchhccccccccccCCCCCcceEEEEEEEEeecCCCCCcceEEeeeccccccCCCc
Q 004356 80 GGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSEN 159 (759)
Q Consensus 80 ~gv~V~gL~e~~V~s~~e~~~lL~~G~~~R~~~~T~~N~~SSRSH~IftI~v~~~~~~~~~~~~~~~skL~lVDLAGSEr 159 (759)
++++|.|++.+.|.+.+++..++..|..+|.+++|.+|.+|||||+||+|+|...... ......|.|+|||||||||
T Consensus 476 ~~~~V~~~t~~~V~s~~~v~~ll~~g~~nRsv~~T~~Ne~SSRSH~v~~v~v~g~~~~---t~~~~~g~l~LVDLAGSER 552 (670)
T KOG0239|consen 476 GNLMVPLLTVIKVGSSEEVDILLEIGLSNRSVASTASNERSSRSHLVFRVRIRGINEL---TGIRVTGVLNLVDLAGSER 552 (670)
T ss_pred CceecccceEEecCCHHHHHHHHHHhhccccccccccchhhhccceEEEEEEeccccC---cccccccceeEeecccCcc
Confidence 9999999999999999999999999999999999999999999999999999765322 2234679999999999999
Q ss_pred ccCCCCchhhHHHHHHhhhhHHHHHHHHHHHhhCCCCCCCCCCccccccccccCCCceeeEEeecCCCCCChHhHHHHHH
Q 004356 160 ISRSGAREGRAREAGEINKSLLTLGRVINALVEHSGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLSTLD 239 (759)
Q Consensus 160 ~~ks~a~g~r~kEa~~INkSLlaLg~VI~aL~~~~~hIPYRdSKLTrLLqdsLGGnskT~mIatVSP~~~~~eETlsTL~ 239 (759)
+++++++|+|++|+.+||+||++||.||.||+.+.+|||||+||||+||||+|||++||.|+++|||...++.||+++|+
T Consensus 553 ~~~s~~tG~RlkE~Q~INkSLS~LgdVi~AL~~k~~HiPyRNSKLT~lLq~sLGG~sKTLmfv~isP~~~~~~Etl~sL~ 632 (670)
T KOG0239|consen 553 VSKSGVTGERLKEAQNINKSLSALGDVISALASKRSHIPYRNSKLTQLLQDSLGGDSKTLMFVNISPAAAALFETLCSLR 632 (670)
T ss_pred cCcCCCchhhhHHHHHhchhhhhhHHHHHHHhhcCCCCcccccchHHHhHhhhCCccceeeEEEeCccHHHHhhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCccccccccc
Q 004356 240 YAHRAKNIKNKPEINQK 256 (759)
Q Consensus 240 fA~rak~Ikn~p~vN~~ 256 (759)
||.|++.+...|-.-+.
T Consensus 633 FA~rv~~~~lG~a~~~~ 649 (670)
T KOG0239|consen 633 FATRVRSVELGSARKQV 649 (670)
T ss_pred hHHHhhceecccccccc
Confidence 99999999988765443
No 26
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=6.2e-49 Score=426.22 Aligned_cols=234 Identities=50% Similarity=0.799 Sum_probs=215.2
Q ss_pred CCCCCCCCCCCCCCCCcHHHHHHHHHHHHhhc---CCeEEEEEEEEEEEcCceeecCCCCCCCccccCCCCCCeeEEecC
Q 004356 2 EGGARKKNGEFPSDAGVIPRAVKQIFDILEAQ---HAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALMEDG 78 (759)
Q Consensus 2 ~G~~~~~~g~~~~~~GIIPRal~~LF~~l~~~---~~~~sV~vS~lEIYnE~v~DLL~~~~~~~~~~~~~~~~l~i~ed~ 78 (759)
+|++++..|. +.++|||||++++||+.+... ...|.|++||+|||+|.|+|||++.. .+.++.+++++
T Consensus 90 SGKT~tl~G~-~~~~Gli~~~~~~Lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~--------~~~~l~i~~~~ 160 (328)
T cd00106 90 SGKTYTMFGS-PKDPGIIPRALEDLFNLIDERKEKNKSFSVSVSYLEIYNEKVYDLLSPEP--------PSKPLSLREDP 160 (328)
T ss_pred CCCeEEecCC-CCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCEeEECCCCCC--------CCCCcEEEEcC
Confidence 4555555665 689999999999999999876 36899999999999999999999752 24589999999
Q ss_pred CCCeEecCcEEEEecCHHHHHHHHHhchhccccccccccCCCCCcceEEEEEEEEeecCCCCCcceEEeeeccccccCCC
Q 004356 79 KGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSE 158 (759)
Q Consensus 79 ~~gv~V~gL~e~~V~s~~e~~~lL~~G~~~R~~~~T~~N~~SSRSH~IftI~v~~~~~~~~~~~~~~~skL~lVDLAGSE 158 (759)
.++++|.|++++.|.|++|++.+|..|..+|.+++|.+|..|||||+||+|+|........+. ....|+|+||||||||
T Consensus 161 ~~~~~v~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~-~~~~s~l~~VDLaGse 239 (328)
T cd00106 161 KGGVYVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRNTTNDGR-SIKSSKLNLVDLAGSE 239 (328)
T ss_pred CCCEEEeCCEEEEeCCHHHHHHHHHHHHhhcCcccCcCCCCcCcCcEEEEEEEEEEecCCCCc-cEEEEEEEEEECCCCC
Confidence 999999999999999999999999999999999999999999999999999998875543321 3678999999999999
Q ss_pred cccCCCCchhhHHHHHHhhhhHHHHHHHHHHHhhCC--CCCCCCCCccccccccccCCCceeeEEeecCCCCCChHhHHH
Q 004356 159 NISRSGAREGRAREAGEINKSLLTLGRVINALVEHS--GHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLS 236 (759)
Q Consensus 159 r~~ks~a~g~r~kEa~~INkSLlaLg~VI~aL~~~~--~hIPYRdSKLTrLLqdsLGGnskT~mIatVSP~~~~~eETls 236 (759)
+..+.++.+.+.+|+..||+||.+|++||.+|+.+. .|||||+||||+||+|+|||+++|+||+||||...+++||++
T Consensus 240 ~~~~~~~~~~~~~e~~~in~sl~~L~~vl~~l~~~~~~~~ip~r~SkLT~lL~~~l~g~~~t~~I~~vsp~~~~~~eTl~ 319 (328)
T cd00106 240 RAKKTGAEGDRLKEAKNINKSLSALGNVISALSSGQKKKHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSSENYDETLS 319 (328)
T ss_pred cccccCCchhhhHhHHhhhhhHHHHHHHHHHHHhcCCCCcCCCcCcHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHH
Confidence 999999999999999999999999999999999988 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc
Q 004356 237 TLDYAHRAK 245 (759)
Q Consensus 237 TL~fA~rak 245 (759)
||+||.|||
T Consensus 320 tL~~a~r~~ 328 (328)
T cd00106 320 TLRFASRAK 328 (328)
T ss_pred HHHHHHhcC
Confidence 999999986
No 27
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3.2e-48 Score=447.11 Aligned_cols=266 Identities=45% Similarity=0.694 Sum_probs=234.8
Q ss_pred CCCCCCCCCCCCCCCcHHHHHHHHHHHHhhcC--CeEEEEEEEEEEEcCceeecCCCCCCCccccCCCCCCeeEEecCCC
Q 004356 3 GGARKKNGEFPSDAGVIPRAVKQIFDILEAQH--AEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALMEDGKG 80 (759)
Q Consensus 3 G~~~~~~g~~~~~~GIIPRal~~LF~~l~~~~--~~~sV~vS~lEIYnE~v~DLL~~~~~~~~~~~~~~~~l~i~ed~~~ 80 (759)
|+.++..|. ...+||||+++..||+.++... .+|.|.|||+|||||+++|||.|... .+.++++..+
T Consensus 102 gKtyt~~G~-~~~~Gii~~~l~~lf~~l~~~~~~~~~~v~is~lEiYnEk~~DLl~~~~~----------~~~~~~~~~~ 170 (568)
T COG5059 102 GKTYTMSGT-EEEPGIIPLSLKELFSKLEDLSMTKDFAVSISYLEIYNEKIYDLLSPNEE----------SLNIREDSLL 170 (568)
T ss_pred CceeEeecC-ccccchHHHHHHHHHHHHHhcccCcceeeEeehhHHHhhHHHhhccCccc----------cccccccCCC
Confidence 444444554 6899999999999999998765 78999999999999999999997652 2678899999
Q ss_pred CeEecCcEEEEecCHHHHHHHHHhchhccccccccccCCCCCcceEEEEEEEEeecCCCCCcceEEeeeccccccCCCcc
Q 004356 81 GVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSENI 160 (759)
Q Consensus 81 gv~V~gL~e~~V~s~~e~~~lL~~G~~~R~~~~T~~N~~SSRSH~IftI~v~~~~~~~~~~~~~~~skL~lVDLAGSEr~ 160 (759)
+|+|.|+++..|.++++++.+|.+|..+|+++.|.+|+.|||||+||++++........ ....++|+||||||||++
T Consensus 171 ~v~v~~l~~~~~~s~ee~l~~l~~~~~nr~~~~te~n~~ssRshsi~~i~~~~~~~~~~---~~~~~~l~lvDLagSE~~ 247 (568)
T COG5059 171 GVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVSG---TSETSKLSLVDLAGSERA 247 (568)
T ss_pred ceEeecceEEecCChHHHHHHHHHhhhhcccccchhccccccceEEEEEEEEEeccCcc---ceecceEEEEeecccccc
Confidence 99999999999999999999999999999999999999999999999999987654432 234479999999999999
Q ss_pred cCCCCchhhHHHHHHhhhhHHHHHHHHHHHhh--CCCCCCCCCCccccccccccCCCceeeEEeecCCCCCChHhHHHHH
Q 004356 161 SRSGAREGRAREAGEINKSLLTLGRVINALVE--HSGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLSTL 238 (759)
Q Consensus 161 ~ks~a~g~r~kEa~~INkSLlaLg~VI~aL~~--~~~hIPYRdSKLTrLLqdsLGGnskT~mIatVSP~~~~~eETlsTL 238 (759)
.++++.+.|++|+..||+||++||+||++|.+ +..|||||||||||||+|+|||+|+|++||||+|...+++||.+||
T Consensus 248 ~~~~~~~~r~~E~~~iN~sLl~Lg~vI~~L~~~~~~~~ipyReskLTRlLq~sLgG~~~~~~i~~Isp~~~~~~et~~tL 327 (568)
T COG5059 248 ARTGNRGTRLKEGASINKSLLTLGNVINALGDKKKSGHIPYRESKLTRLLQDSLGGNCNTRVICTISPSSNSFEETINTL 327 (568)
T ss_pred chhhcccchhhhhhhhHhhHHHHHHHHHHHhccccCCccchhhhHHHHHHHHhcCCCccEEEEEEEcCCCCchHHHHHHH
Confidence 99999999999999999999999999999998 7889999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhCCCcCC
Q 004356 239 DYAHRAKNIKNKPEINQKMMKSAMIKDLYSEIDRLKQEVYAAREKNGIYIP 289 (759)
Q Consensus 239 ~fA~rak~Ikn~p~vN~~~~~~~li~~l~~Ei~~Lk~el~~~r~k~g~~~~ 289 (759)
+||.||++|+|+|.+|.. .+...++..++.++...+...+.+..
T Consensus 328 ~~a~rak~I~~~~~~~~~-------~~~~~~~~~~~~d~~~~~~~~~~~~~ 371 (568)
T COG5059 328 KFASRAKSIKNKIQVNSS-------SDSSREIEEIKFDLSEDRSEIEILVF 371 (568)
T ss_pred HHHHHHhhcCCcccccCc-------CcchHHHHHHHhhhhhhhhhhhhHHH
Confidence 999999999999999964 22334566667777766666555443
No 28
>KOG0246 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=6.1e-47 Score=415.78 Aligned_cols=234 Identities=39% Similarity=0.625 Sum_probs=210.5
Q ss_pred CCCCCCCCCCCC-----CCCCcHHHHHHHHHHHHhhc---CCeEEEEEEEEEEEcCceeecCCCCCCCccccCCCCCCee
Q 004356 2 EGGARKKNGEFP-----SDAGVIPRAVKQIFDILEAQ---HAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIA 73 (759)
Q Consensus 2 ~G~~~~~~g~~~-----~~~GIIPRal~~LF~~l~~~---~~~~sV~vS~lEIYnE~v~DLL~~~~~~~~~~~~~~~~l~ 73 (759)
+|+++|++|+++ ...||.-++.+++|-.+... ..++.|+|||||||+.+|||||++ ++.|.
T Consensus 303 SGKT~TMggdfsgk~q~~s~giya~aa~Dvf~~L~~p~Y~~~~l~v~~tFFEIYgGKvfDLL~~-----------k~KLr 371 (676)
T KOG0246|consen 303 SGKTYTMGGDFSGKAQDCSKGIYALAARDVFRLLRQPTYRKLDLKVYVTFFEIYGGKVYDLLND-----------KKKLR 371 (676)
T ss_pred CCceeecccccCcccccccccchhhhhhHHHHHhcccchhhcceEEEEEEEEEeCcchhhhhcc-----------ccceE
Confidence 466667777654 34699999999999999874 348999999999999999999984 35799
Q ss_pred EEecCCCCeEecCcEEEEecCHHHHHHHHHhchhccccccccccCCCCCcceEEEEEEEEeecCCCCCcceEEeeecccc
Q 004356 74 LMEDGKGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVD 153 (759)
Q Consensus 74 i~ed~~~gv~V~gL~e~~V~s~~e~~~lL~~G~~~R~~~~T~~N~~SSRSH~IftI~v~~~~~~~~~~~~~~~skL~lVD 153 (759)
+.||++..|.|.||+|..|.+.++++.+|..|+.-|+++.|..|..|||||+||.|.+... .+....||+.|||
T Consensus 372 vLEDg~QQVqVVGLqE~~v~~~eeVl~lIe~Gns~RtsG~TsANs~SSRSHAvfQIilr~~------~~~k~hGKfSlID 445 (676)
T KOG0246|consen 372 VLEDGNQQVQVVGLQEEEVSGVEEVLELIEKGNSCRTSGQTSANSNSSRSHAVFQIILRKH------GEFKLHGKFSLID 445 (676)
T ss_pred EeecCCceEEEeeceeeeccCHHHHHHHHHhcccccccCcccCcccccccceeEeeeeecC------CcceeEeEEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999642 1234679999999
Q ss_pred ccCCCcccCC-CCchhhHHHHHHhhhhHHHHHHHHHHHhhCCCCCCCCCCccccccccccCC-CceeeEEeecCCCCCCh
Q 004356 154 LAGSENISRS-GAREGRAREAGEINKSLLTLGRVINALVEHSGHVPYRDSKLTRLLRDSLGG-KTKTCIIATVSPSIHCL 231 (759)
Q Consensus 154 LAGSEr~~ks-~a~g~r~kEa~~INkSLlaLg~VI~aL~~~~~hIPYRdSKLTrLLqdsLGG-nskT~mIatVSP~~~~~ 231 (759)
|||+||...+ .+..++..||..||+||++|--||.||..+++|+|||.||||.+|+|||=| |++||||+||||...+.
T Consensus 446 LAGnERGaDts~adRqtRlEGAEINKSLLALKECIRaLg~nk~H~PFR~SKLTqVLRDSFIGenSrTcMIA~ISPg~~Sc 525 (676)
T KOG0246|consen 446 LAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNKSHLPFRGSKLTQVLRDSFIGENSRTCMIATISPGISSC 525 (676)
T ss_pred ccCCccCCcccccchhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhHHHHHHHhhcCCCCceEEEEEeCCCcchh
Confidence 9999998654 456677889999999999999999999999999999999999999999988 99999999999999999
Q ss_pred HhHHHHHHHHHHhccCccccc
Q 004356 232 EETLSTLDYAHRAKNIKNKPE 252 (759)
Q Consensus 232 eETlsTL~fA~rak~Ikn~p~ 252 (759)
+.||+||+||+|+|.+.-.+.
T Consensus 526 EhTLNTLRYAdRVKeLsv~~~ 546 (676)
T KOG0246|consen 526 EHTLNTLRYADRVKELSVDGG 546 (676)
T ss_pred hhhHHHHHHHHHHHhhcCCCC
Confidence 999999999999999765443
No 29
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=100.00 E-value=1.9e-36 Score=304.17 Aligned_cols=129 Identities=54% Similarity=0.792 Sum_probs=122.3
Q ss_pred HHHHHHhchhccccccccccCCCCCcceEEEEEEEEeecCCCCCcceEEeeeccccccCCCcccCCCCchhhHHHHHHhh
Q 004356 98 IYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSENISRSGAREGRAREAGEIN 177 (759)
Q Consensus 98 ~~~lL~~G~~~R~~~~T~~N~~SSRSH~IftI~v~~~~~~~~~~~~~~~skL~lVDLAGSEr~~ks~a~g~r~kEa~~IN 177 (759)
++.+|..|..+|+.+.|.+|..|||||+||+|+|.+......+......|+|+||||||||+..++++.+.+++|+..||
T Consensus 58 ~~~ll~~g~~~R~~~~t~~N~~SSRsH~i~~i~v~~~~~~~~~~~~~~~s~l~lVDLAGsE~~~~~~~~~~~~~e~~~in 137 (186)
T cd01363 58 VIDLMDKGNANRTTAATAMNEHSSRSHSVFRIHFGGKNALASATEQPKVGKINLVDLAGSERIDFSGAEGSRLTETANIN 137 (186)
T ss_pred HHHHHhhccccccccccCCCCccCcccEEEEEEEEEeecCCCCccceeeeeEEEEEccccccccccCCchhhHHHHHHHh
Confidence 78899999999999999999999999999999998876555444566889999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhhCCCCCCCCCCccccccccccCCCceeeEEeecCC
Q 004356 178 KSLLTLGRVINALVEHSGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSP 226 (759)
Q Consensus 178 kSLlaLg~VI~aL~~~~~hIPYRdSKLTrLLqdsLGGnskT~mIatVSP 226 (759)
+||++|++||.+|+++..||||||||||+||+|+|||||+|+||+||||
T Consensus 138 ~sl~~L~~~i~~l~~~~~~vpyr~SkLT~lL~~~L~g~~~t~~i~~vsP 186 (186)
T cd01363 138 KSLSTLGNVISALAERDSHVPYRESKLTRLLQDSLGGNSRTLMVACISP 186 (186)
T ss_pred hHHHHHHHHHHHHhcCCCCCCCcccHHHHHHHHhcCCCCeEEEEEEeCc
Confidence 9999999999999999999999999999999999999999999999999
No 30
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=98.63 E-value=0.0043 Score=75.86 Aligned_cols=50 Identities=14% Similarity=0.140 Sum_probs=23.8
Q ss_pred HHhHHHHHhHhhHHHHHHhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 004356 572 SVSKVTVNFFKTLDMHASNLTKIVEEAQTVNDQKLFEFEKKFEESAANEE 621 (759)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 621 (759)
.+...+..|++++..........++.-.+......+...+.+-......+
T Consensus 744 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~e~~~~~~q~~~e~~~~~~~~~~ 793 (1041)
T KOG0243|consen 744 SLSQKLSSFQKKFESIAEDEKQLVEDIKELLSSHDQRNNELLDIALQTLR 793 (1041)
T ss_pred HHHHHHHHHhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445556666666644455555555444444444444444433333333
No 31
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.94 E-value=0.075 Score=61.83 Aligned_cols=147 Identities=18% Similarity=0.227 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhH-
Q 004356 427 QMFQSQLTQQLEILHKTVATSVTQQEQQLKDMEEDMQSFVSTKAEATEELRGRLGKLKAMYGSGIKALDGIAGELDGNS- 505 (759)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~- 505 (759)
..|+.+|...|.+++..+.....+- .+.++.++..+ +.+++..........+..-|++..++..+..--
T Consensus 241 ~~F~~eL~~Ai~eiRaqye~~~~~n-------R~diE~~Y~~k---I~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~ 310 (546)
T KOG0977|consen 241 EYFKNELALAIREIRAQYEAISRQN-------RKDIESWYKRK---IQEIRTSAERANVEQNYAREELRRIRSRISGLRA 310 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-------HHHHHHHHHHH---HHHHHhhhccccchhHHHHHHHHHHHhcccchhh
Confidence 4566667776666665555433222 22333333322 222232222222223333334433333332211
Q ss_pred -HhhHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhhH
Q 004356 506 -RSTFGDLNSEVSKHSHALEDLFKGIASEADSLLNDLQSSLYKQEEKLTAYAQQQREAHSRAVENARSVSKVTVNFFKTL 584 (759)
Q Consensus 506 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (759)
...|+.-+..+..-...++..+..-..-|...+++--..+...+++++.+-.++.....- .-.|
T Consensus 311 klselE~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mReec~~l~~Elq~LlD~---------------ki~L 375 (546)
T KOG0977|consen 311 KLSELESRNSALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMREECQQLSVELQKLLDT---------------KISL 375 (546)
T ss_pred hhccccccChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhch---------------HhHH
Confidence 345666677777777777777777777777777777777777777776555544443321 2235
Q ss_pred HHHHHhHHHHHHHH
Q 004356 585 DMHASNLTKIVEEA 598 (759)
Q Consensus 585 ~~~~~~l~~~~~~~ 598 (759)
+.++..-+.+|+.+
T Consensus 376 d~EI~~YRkLLege 389 (546)
T KOG0977|consen 376 DAEIAAYRKLLEGE 389 (546)
T ss_pred HhHHHHHHHHhccc
Confidence 55566666666655
No 32
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=97.91 E-value=0.2 Score=65.02 Aligned_cols=333 Identities=14% Similarity=0.162 Sum_probs=157.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHH
Q 004356 398 LENAASDVSNLFAKIERKDKIEEGNRILIQMFQSQLTQQLEILHKTVATSVTQQEQQLKDMEEDMQSFVSTKAEATEELR 477 (759)
Q Consensus 398 l~~~~~~~~~L~~ki~~k~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 477 (759)
++.+..+..+|..-+...+............-+..+...++.+.+.+.. +...++.....++.+.......+....
T Consensus 768 ~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~----lk~klq~~~~~~r~l~~~~~~~l~~~~ 843 (1822)
T KOG4674|consen 768 LEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELERELQK----LKKKLQEKSSDLRELTNSLEKQLENAQ 843 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 3333333334443333333333344444444444556666666655553 344566666666666666666666666
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhhhHHhhHhhHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHhHHHH---HHHHH
Q 004356 478 GRLGKLKAMYGSGIKALDGIAGELDGNSRSTFGDLNSEVSKHSHALEDLFK-GIASEADSLLNDLQSSLYKQ---EEKLT 553 (759)
Q Consensus 478 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~e~~ 553 (759)
..+..+...+.+....+..+...+..... -+..|..-+..--......-. +...|+....+.|...+... +..+.
T Consensus 844 ~~i~~~~~~~~~~~~~l~~~~~~~~~le~-k~~eL~k~l~~~~~~~~~l~~~~~~~d~~~~~~~Lr~~~eq~~~l~~~L~ 922 (1822)
T KOG4674|consen 844 NLVDELESELKSLLTSLDSVSTNIAKLEI-KLSELEKRLKSAKTQLLNLDSKSSNEDATILEDTLRKELEEITDLKEELT 922 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666555544443221 111111111111111110000 00111111111111111111 11111
Q ss_pred H---HHHHHHHHHHHHHHHHHHHhHHHHHhHhhHHHHHHhHHHHHHHHH---HhhhhhHHHHHHHHHHHHHHHHHHHH--
Q 004356 554 A---YAQQQREAHSRAVENARSVSKVTVNFFKTLDMHASNLTKIVEEAQ---TVNDQKLFEFEKKFEESAANEERQLL-- 625 (759)
Q Consensus 554 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~l~-- 625 (759)
. -..++++.+...=++...+......|+..+...+..+..-+.+-- ......+..+.....-..+..+.++.
T Consensus 923 ~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~~k~~e~~~~~~ 1002 (1822)
T KOG4674|consen 923 DALSQIREYQEEYSSLEQSLESVKSELDETRLELEAKIESLHKKITSLEEELSELEKEIENLREELELSTKGKEDKLLDL 1002 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhHHHH
Confidence 1 112344444444455556666777777777766666655444432 12223333333322222222222222
Q ss_pred -HHHHHHHH---------hHHHHHHHHHHHHHHHHHHhHHhhhHhHHHHhhhhhhh----------hhhhHHhHHHHHH-
Q 004356 626 -EKVAELLA---------SSNARKKQLVQMAVQDLRESASSRTSQLQKEMSTMQDS----------TFSVKAEWSAHMN- 684 (759)
Q Consensus 626 -~~i~~l~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~mq~~----------~~~~k~~~~~~~~- 684 (759)
.+|..+.+ +.+..+..-++.-+......+......++.+|-.-.+. -..++++|...-.
T Consensus 1003 ~~e~~sl~ne~~~~~~~~s~~~~~~~~~k~dl~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~~~~~e~~~Lk~~ 1082 (1822)
T KOG4674|consen 1003 SREISSLQNELKSLLKAASQANEQIEDLQNDLKTETEQLRKAQSKYESELVQHADLTQKLIKLREEFAKCNDELLKLKKS 1082 (1822)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 22222222 12222222233333333333333333333333332222 2334444444433
Q ss_pred --hhhhhhhhhhhhhhhhhchHHHHHHHHHhhhhchHHHHHHHHHHHHhhhch
Q 004356 685 --KTESHYLEDTSAVENGKKDLEVVLQNCLKQAKMGAQQWRTAQESLLNLEKN 735 (759)
Q Consensus 685 --~~e~~~~e~~~~~~~~~~~m~~~lq~c~~~~~~~~~~w~~~~~~~~~l~~~ 735 (759)
.+.+.+.+-.+....+...|+..+-.|.++..+--.|.+.-|.-|..+.-.
T Consensus 1083 ~~~~~~~l~e~~~~w~E~~~~Leqe~~~~~~~~~~L~~qNslLh~qie~~s~~ 1135 (1822)
T KOG4674|consen 1083 RESRHALLSEQERDWSEKEDALEQEVNELKKRIESLEKQNSLLHDQFEELSQQ 1135 (1822)
T ss_pred HHHHHhHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 555666777788889999999999999999999999999988887776544
No 33
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=97.81 E-value=0.32 Score=64.18 Aligned_cols=17 Identities=29% Similarity=0.460 Sum_probs=7.9
Q ss_pred hhhhhhhhchHHHHHHH
Q 004356 694 TSAVENGKKDLEVVLQN 710 (759)
Q Consensus 694 ~~~~~~~~~~m~~~lq~ 710 (759)
+.....++.+.+.+|-+
T Consensus 1430 ~~~le~k~k~f~k~l~e 1446 (1930)
T KOG0161|consen 1430 VAALEKKQKRFEKLLAE 1446 (1930)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444445555444433
No 34
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.68 E-value=0.44 Score=61.91 Aligned_cols=19 Identities=11% Similarity=0.263 Sum_probs=11.0
Q ss_pred HHHhhhhhhhhhhhHHhHH
Q 004356 662 QKEMSTMQDSTFSVKAEWS 680 (759)
Q Consensus 662 ~~~~s~mq~~~~~~k~~~~ 680 (759)
+.|-.+|.++-.-++.=|.
T Consensus 1133 ~~~~~~~~~~n~~~~~~w~ 1151 (1311)
T TIGR00606 1133 KFHSMKMEEINKIIRDLWR 1151 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444556666666666664
No 35
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.65 E-value=0.21 Score=58.18 Aligned_cols=95 Identities=21% Similarity=0.262 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 320 QLMELQELYNSQLLLTAELSEKLEKTEKKLEETEHALSDLEEKHRQANATIKEKDFLIANLLKSEKALVERAIELRTELE 399 (759)
Q Consensus 320 ~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~l~~~e~~~~~~~~~l~e~e~~i~~l~~~e~~l~~~~~~l~~~l~ 399 (759)
++..+...+++.......++.++.+++.++.+++..+.+.+.........+......+..++..-.-+.-....+...+.
T Consensus 93 El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~ 172 (546)
T KOG0977|consen 93 ELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELK 172 (546)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 33444444444444444455555555555555555555444444444444444444433332222222222233334444
Q ss_pred HHHHHHHHHHHHHHh
Q 004356 400 NAASDVSNLFAKIER 414 (759)
Q Consensus 400 ~~~~~~~~L~~ki~~ 414 (759)
.+..++..|+..|.+
T Consensus 173 ~Lk~en~rl~~~l~~ 187 (546)
T KOG0977|consen 173 RLKAENSRLREELAR 187 (546)
T ss_pred HHHHHhhhhHHHHHH
Confidence 444444444444443
No 36
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.46 E-value=0.53 Score=57.47 Aligned_cols=156 Identities=21% Similarity=0.271 Sum_probs=100.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhCCCcCCcchhH--HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 259 KSAMIKDLYSEIDRLKQEVYAAREKNGIYIPRDRYL--QE---EAEKKAMAEKIERMELESESKDKQLMELQELYNSQLL 333 (759)
Q Consensus 259 ~~~li~~l~~Ei~~Lk~el~~~r~k~g~~~~~~~~~--~~---e~e~~~~~~~i~~~~~~l~~~~~~l~~l~~~~~~~~~ 333 (759)
++.-|..|...+..|..+++.++...+....+.... ++ ......++.+++.+..++..++.++..++..+.....
T Consensus 236 Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~ 315 (775)
T PF10174_consen 236 KDTKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETLEE 315 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566778888888889999999987765544332222 22 2233456777999999998888888888888877766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Q 004356 334 LTAELSEKLEKTEKKLEETEHALSDLEEKHRQANATIKEKDFLIANLLKSEK-------ALVERAIELRTELENAASDVS 406 (759)
Q Consensus 334 ~~~~l~~~l~~~~~~l~~~~~~l~~~e~~~~~~~~~l~e~e~~i~~l~~~e~-------~l~~~~~~l~~~l~~~~~~~~ 406 (759)
...+++.-+..++..+......-.-++.+...+...+.++...+......-. .+......++..++.....+.
T Consensus 316 ~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~ 395 (775)
T PF10174_consen 316 QDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKIN 395 (775)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777777777777666666666666666666666665555444432222 233334445555555555566
Q ss_pred HHHHHHHh
Q 004356 407 NLFAKIER 414 (759)
Q Consensus 407 ~L~~ki~~ 414 (759)
.|+.+|+.
T Consensus 396 ~Lq~kie~ 403 (775)
T PF10174_consen 396 VLQKKIEN 403 (775)
T ss_pred HHHHHHHH
Confidence 66666553
No 37
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.43 E-value=0.74 Score=58.30 Aligned_cols=12 Identities=25% Similarity=0.493 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 004356 266 LYSEIDRLKQEV 277 (759)
Q Consensus 266 l~~Ei~~Lk~el 277 (759)
+..++..++.++
T Consensus 675 l~~e~~~l~~~~ 686 (1179)
T TIGR02168 675 RRREIEELEEKI 686 (1179)
T ss_pred HHHHHHHHHHHH
Confidence 334444444443
No 38
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.42 E-value=0.83 Score=58.72 Aligned_cols=31 Identities=19% Similarity=0.332 Sum_probs=17.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhHHh
Q 004356 626 EKVAELLASSNARKKQLVQMAVQDLRESASS 656 (759)
Q Consensus 626 ~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (759)
..|...+.+.......++......++.....
T Consensus 994 ~~l~~~i~~~d~~~~~~f~~~f~~In~~F~~ 1024 (1163)
T COG1196 994 EKLLEVIEELDKEKRERFKETFDKINENFSE 1024 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555666666666666666654443
No 39
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=97.41 E-value=1 Score=59.61 Aligned_cols=79 Identities=24% Similarity=0.245 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHhHHhhhHhHHHHhhhhhhh---hhhhHHhHHHHHHhhhhhhhhhhhhhhhhhchHHHHHHHHHhh
Q 004356 638 RKKQLVQMAVQDLRESASSRTSQLQKEMSTMQDS---TFSVKAEWSAHMNKTESHYLEDTSAVENGKKDLEVVLQNCLKQ 714 (759)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~mq~~---~~~~k~~~~~~~~~~e~~~~e~~~~~~~~~~~m~~~lq~c~~~ 714 (759)
|+..-+...+.+++.....-...++.+...+... .+.+..+....-.+.+..-...+--.+.-+..+..-+|.|-..
T Consensus 1315 r~k~~l~~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~ 1394 (1930)
T KOG0161|consen 1315 REKSALENALRQLEHELDLLREQLEEEQEAKNELERKLSKANAELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQ 1394 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4444555555555555555555555555543333 2333333333334444444443333444444444444444444
Q ss_pred hh
Q 004356 715 AK 716 (759)
Q Consensus 715 ~~ 716 (759)
..
T Consensus 1395 ~e 1396 (1930)
T KOG0161|consen 1395 IE 1396 (1930)
T ss_pred HH
Confidence 33
No 40
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.36 E-value=0.76 Score=57.00 Aligned_cols=36 Identities=19% Similarity=0.222 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHhHHHHHhHhhHHHHHHhHHHHHHHHH
Q 004356 562 AHSRAVENARSVSKVTVNFFKTLDMHASNLTKIVEEAQ 599 (759)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 599 (759)
+|..+++. ......+.|.-..+....-|+.++.+.-
T Consensus 509 KWa~aIE~--~L~n~lnaFiv~sh~D~~~Lr~i~~~~~ 544 (1074)
T KOG0250|consen 509 KWALAIER--CLGNLLNAFIVTSHKDARILRAIMRRLK 544 (1074)
T ss_pred HHHHHHHH--HHHHhhhhheeCCHhhHHHHHHHHHHcC
Confidence 88888874 4556678899999999999998887763
No 41
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.31 E-value=1.1 Score=57.64 Aligned_cols=18 Identities=11% Similarity=0.488 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004356 261 AMIKDLYSEIDRLKQEVY 278 (759)
Q Consensus 261 ~li~~l~~Ei~~Lk~el~ 278 (759)
.++.++..+++.|+.+..
T Consensus 193 ~~~~el~~~l~~L~~q~~ 210 (1163)
T COG1196 193 DLLEELEKQLEKLERQAE 210 (1163)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445556666666665543
No 42
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.26 E-value=0.42 Score=51.97 Aligned_cols=104 Identities=29% Similarity=0.423 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCcCC--cchhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 262 MIKDLYSEIDRLKQEVYAAREKNGIYIP--RDRYLQEEAEKKAMA-------EKIERMELESESKDKQLMELQELYNSQL 332 (759)
Q Consensus 262 li~~l~~Ei~~Lk~el~~~r~k~g~~~~--~~~~~~~e~e~~~~~-------~~i~~~~~~l~~~~~~l~~l~~~~~~~~ 332 (759)
.++.|..+...|..++..++.+.|...+ ...|. .+...+. .....++.++.+....+..++..|+...
T Consensus 19 kVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye---~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~ 95 (312)
T PF00038_consen 19 KVRFLEQENKRLESEIEELREKKGEEVSRIKEMYE---EELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEEL 95 (312)
T ss_dssp HHHHHHHHHHHHHHHHHH---------HHHHHHHH---HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHhcccccCcccccchh---hHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 3567778888888888888776433222 12232 2222222 2233444455555566666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 333 LLTAELSEKLEKTEKKLEETEHALSDLEEKHRQANA 368 (759)
Q Consensus 333 ~~~~~l~~~l~~~~~~l~~~~~~l~~~e~~~~~~~~ 368 (759)
.....+...+..++..++.......+++..+..++.
T Consensus 96 ~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~e 131 (312)
T PF00038_consen 96 AERKDLEEELESLRKDLDEETLARVDLENQIQSLKE 131 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHH
Confidence 666666666666666665555555555554444443
No 43
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.20 E-value=1.3 Score=56.23 Aligned_cols=17 Identities=24% Similarity=0.524 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004356 263 IKDLYSEIDRLKQEVYA 279 (759)
Q Consensus 263 i~~l~~Ei~~Lk~el~~ 279 (759)
+..+..++..+..++..
T Consensus 679 ~~~l~~~~~~l~~~l~~ 695 (1179)
T TIGR02168 679 IEELEEKIEELEEKIAE 695 (1179)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455555555555443
No 44
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.09 E-value=1.2 Score=54.05 Aligned_cols=77 Identities=18% Similarity=0.314 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 341 KLEKTEKKLEETEHALSDLEEKHRQANATIKE--------KDFLIANLLKSEKALVERAIELRTELENAASDVSNLFAKI 412 (759)
Q Consensus 341 ~l~~~~~~l~~~~~~l~~~e~~~~~~~~~l~e--------~e~~i~~l~~~e~~l~~~~~~l~~~l~~~~~~~~~L~~ki 412 (759)
..+.++.+++-++..+.+++-+++.++..+++ -.+....++.-+.+|.+....|+........|...++..+
T Consensus 326 RaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kel 405 (1243)
T KOG0971|consen 326 RAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKEL 405 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 34556666666777777777777766666655 1233344555566676667777777777777778888777
Q ss_pred HhHHH
Q 004356 413 ERKDK 417 (759)
Q Consensus 413 ~~k~~ 417 (759)
++|..
T Consensus 406 E~k~s 410 (1243)
T KOG0971|consen 406 EKKNS 410 (1243)
T ss_pred HHHhh
Confidence 76554
No 45
>PRK02224 chromosome segregation protein; Provisional
Probab=97.07 E-value=1.5 Score=54.59 Aligned_cols=8 Identities=25% Similarity=0.443 Sum_probs=3.9
Q ss_pred eEEEEEEE
Q 004356 36 EYSMKVTF 43 (759)
Q Consensus 36 ~~sV~vS~ 43 (759)
.+.|.+.|
T Consensus 67 ~~~v~~~f 74 (880)
T PRK02224 67 EAEIELWF 74 (880)
T ss_pred cEEEEEEE
Confidence 34555544
No 46
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.06 E-value=1.7 Score=55.16 Aligned_cols=31 Identities=13% Similarity=0.234 Sum_probs=17.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHhHHhh
Q 004356 627 KVAELLASSNARKKQLVQMAVQDLRESASSR 657 (759)
Q Consensus 627 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 657 (759)
.|..++..........+......|+......
T Consensus 1004 ~l~~~i~~l~~~~~~~f~~~f~~~~~~f~~~ 1034 (1164)
T TIGR02169 1004 AILERIEEYEKKKREVFMEAFEAINENFNEI 1034 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555566666666666666555544
No 47
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.03 E-value=1.1 Score=52.46 Aligned_cols=9 Identities=33% Similarity=0.486 Sum_probs=4.4
Q ss_pred eccccccCC
Q 004356 149 LNLVDLAGS 157 (759)
Q Consensus 149 L~lVDLAGS 157 (759)
++-||=.|.
T Consensus 92 fcYv~~~g~ 100 (546)
T PF07888_consen 92 FCYVDQKGE 100 (546)
T ss_pred EEEECCCcc
Confidence 445555444
No 48
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.01 E-value=1.9 Score=54.85 Aligned_cols=21 Identities=14% Similarity=0.071 Sum_probs=13.4
Q ss_pred CcEEEEecCHHHHHHHHHhch
Q 004356 86 GLEEEIVTTADEIYKILEKGS 106 (759)
Q Consensus 86 gL~e~~V~s~~e~~~lL~~G~ 106 (759)
.+..+.|.+.+++..+|.--.
T Consensus 548 ~l~~ivv~~~~~a~~~i~~l~ 568 (1164)
T TIGR02169 548 RLNNVVVEDDAVAKEAIELLK 568 (1164)
T ss_pred hhCCEEECCHHHHHHHHHHHH
Confidence 355677888777666665433
No 49
>PRK11637 AmiB activator; Provisional
Probab=96.96 E-value=0.88 Score=52.03 Aligned_cols=11 Identities=9% Similarity=0.311 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 004356 266 LYSEIDRLKQE 276 (759)
Q Consensus 266 l~~Ei~~Lk~e 276 (759)
+..++..++.+
T Consensus 45 ~~~~l~~l~~q 55 (428)
T PRK11637 45 NRDQLKSIQQD 55 (428)
T ss_pred hHHHHHHHHHH
Confidence 33333333333
No 50
>PRK11637 AmiB activator; Provisional
Probab=96.94 E-value=1.1 Score=51.16 Aligned_cols=17 Identities=18% Similarity=0.296 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004356 262 MIKDLYSEIDRLKQEVY 278 (759)
Q Consensus 262 li~~l~~Ei~~Lk~el~ 278 (759)
-++++..+|..++.++.
T Consensus 48 ~l~~l~~qi~~~~~~i~ 64 (428)
T PRK11637 48 QLKSIQQDIAAKEKSVR 64 (428)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444455555444443
No 51
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=96.93 E-value=1.5 Score=52.52 Aligned_cols=115 Identities=17% Similarity=0.246 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHH----HHH
Q 004356 303 MAEKIERMELESESKDKQLMELQELYNSQLLLTAELSEKLEKTEKKLEETEHALSDLEEKHRQANATIKEKDF----LIA 378 (759)
Q Consensus 303 ~~~~i~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~l~~~e~~~~~~~~~l~e~e~----~i~ 378 (759)
+.+-...++.++..++.+|..|+........++..|+.-....+.++.+.+.+|.++...+..+...+-.+.. +-.
T Consensus 90 yRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~ 169 (1265)
T KOG0976|consen 90 YRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGE 169 (1265)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3444445566666677777777766655555555555555555555555555555555544444333332222 223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 004356 379 NLLKSEKALVERAIELRTELENAASDVSNLFAKIERKDK 417 (759)
Q Consensus 379 ~l~~~e~~l~~~~~~l~~~l~~~~~~~~~L~~ki~~k~~ 417 (759)
++......|.+-...+...+.+.......|+.+++.-++
T Consensus 170 ~L~nk~~~lt~~~~q~~tkl~e~~~en~~le~k~~k~~e 208 (1265)
T KOG0976|consen 170 DLHDKNEELNEFNMEFQTKLAEANREKKALEEKLEKFKE 208 (1265)
T ss_pred HHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334333333344444444444445544443333
No 52
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.88 E-value=2.9 Score=54.89 Aligned_cols=36 Identities=25% Similarity=0.298 Sum_probs=27.8
Q ss_pred hhhchHHHHHHHHHhhhhchHHHHHHHHHHHHhhhc
Q 004356 699 NGKKDLEVVLQNCLKQAKMGAQQWRTAQESLLNLEK 734 (759)
Q Consensus 699 ~~~~~m~~~lq~c~~~~~~~~~~w~~~~~~~~~l~~ 734 (759)
.+...++..|.++..+......+|..+...+.-|++
T Consensus 844 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 879 (1486)
T PRK04863 844 RRRVELERALADHESQEQQQRSQLEQAKEGLSALNR 879 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667788888888888888888888888777664
No 53
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.86 E-value=1.2 Score=54.01 Aligned_cols=24 Identities=21% Similarity=0.466 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 004356 260 SAMIKDLYSEIDRLKQEVYAAREK 283 (759)
Q Consensus 260 ~~li~~l~~Ei~~Lk~el~~~r~k 283 (759)
...+.+|..||++||.||.+.|..
T Consensus 417 ~~a~~rLE~dvkkLraeLq~~Rq~ 440 (697)
T PF09726_consen 417 PDAISRLEADVKKLRAELQSSRQS 440 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhh
Confidence 456678999999999999988763
No 54
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.85 E-value=2.9 Score=54.52 Aligned_cols=20 Identities=10% Similarity=-0.051 Sum_probs=8.7
Q ss_pred hHHHHhhhhhhhhhhhHHhH
Q 004356 660 QLQKEMSTMQDSTFSVKAEW 679 (759)
Q Consensus 660 ~~~~~~s~mq~~~~~~k~~~ 679 (759)
.+.+++..++.=-...+.+|
T Consensus 1072 ~l~g~~k~le~qi~~l~~eL 1091 (1311)
T TIGR00606 1072 LALGRQKGYEKEIKHFKKEL 1091 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444
No 55
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=96.82 E-value=2.3 Score=52.97 Aligned_cols=20 Identities=30% Similarity=0.375 Sum_probs=11.6
Q ss_pred HHHHHHHHHHhccCcccccc
Q 004356 234 TLSTLDYAHRAKNIKNKPEI 253 (759)
Q Consensus 234 TlsTL~fA~rak~Ikn~p~v 253 (759)
+..|=++-.||+.|+..+.+
T Consensus 1177 ~~rt~rl~~~A~~l~~tGv~ 1196 (1758)
T KOG0994|consen 1177 ALRTHRLINRAKELKQTGVL 1196 (1758)
T ss_pred HHHHHHHHHHHHHhhhccCc
Confidence 44455566666666665554
No 56
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.81 E-value=2.4 Score=52.90 Aligned_cols=27 Identities=22% Similarity=0.283 Sum_probs=12.6
Q ss_pred HHHHhHHhhhHhHHHHhhhhhhhhhhh
Q 004356 649 DLRESASSRTSQLQKEMSTMQDSTFSV 675 (759)
Q Consensus 649 ~~~~~~~~~~~~~~~~~s~mq~~~~~~ 675 (759)
.+.+....-.-.|+++.+..+...+.+
T Consensus 773 e~~~~~~~~~~~l~~e~~~l~~l~~el 799 (1074)
T KOG0250|consen 773 ELEEYYAAGREKLQGEISKLDALKEEL 799 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 344444444445555555544443333
No 57
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.77 E-value=3.1 Score=53.77 Aligned_cols=38 Identities=11% Similarity=0.266 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHH
Q 004356 515 EVSKHSHALEDLFKGIASEADSLLNDLQSSLYKQEEKLT 553 (759)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 553 (759)
.+...-....+-|.+.|.|- ..+..+...+.....++.
T Consensus 751 ~~~~le~~~~~eL~~~GvD~-~~I~~l~~~i~~L~~~l~ 788 (1201)
T PF12128_consen 751 QLKELEQQYNQELAGKGVDP-ERIQQLKQEIEQLEKELK 788 (1201)
T ss_pred HHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHHHHH
Confidence 33333344445555566664 345556655555555554
No 58
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=96.76 E-value=3.6 Score=54.18 Aligned_cols=37 Identities=14% Similarity=0.191 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhhHhHHHHhhhhhhhh
Q 004356 636 NARKKQLVQMAVQDLRESASSRTSQLQKEMSTMQDST 672 (759)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~mq~~~ 672 (759)
...|...+..-+.++++.........+..+.+|++..
T Consensus 1179 L~qq~~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~ 1215 (1822)
T KOG4674|consen 1179 LKQQVASLNRTIDDLQRSLTAERASSQKSAVSDDEHK 1215 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhh
Confidence 3456666667777777777777777777777766653
No 59
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.74 E-value=1.8 Score=50.69 Aligned_cols=21 Identities=14% Similarity=0.197 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHH
Q 004356 474 EELRGRLGKLKAMYGSGIKAL 494 (759)
Q Consensus 474 ~~l~~~~~~~~~~~~~~~~~i 494 (759)
..|++++..+.+.+.......
T Consensus 286 e~LkeqLr~~qe~lqaSqq~~ 306 (546)
T PF07888_consen 286 EALKEQLRSAQEQLQASQQEA 306 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555444443333
No 60
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.72 E-value=1.7 Score=52.11 Aligned_cols=17 Identities=18% Similarity=0.431 Sum_probs=13.1
Q ss_pred CCCcHHHHHHHHHHHHh
Q 004356 15 DAGVIPRAVKQIFDILE 31 (759)
Q Consensus 15 ~~GIIPRal~~LF~~l~ 31 (759)
..|+-|.++.+|+..-+
T Consensus 43 qS~LP~~VLaqIWALsD 59 (1118)
T KOG1029|consen 43 QSGLPTPVLAQIWALSD 59 (1118)
T ss_pred hcCCChHHHHHHHHhhh
Confidence 45888888999887654
No 61
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.54 E-value=1.1 Score=53.53 Aligned_cols=49 Identities=8% Similarity=0.228 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHh
Q 004356 440 LHKTVATSVTQQEQQLKDMEEDMQSFVSTKAEATEELRGRLGKLKAMYG 488 (759)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 488 (759)
++..+.+.+...+......-.+++.|-....+...++..++....+.|.
T Consensus 543 irq~ikdqldelskE~esk~~eidi~n~qlkelk~~~~~q~lake~~yk 591 (1118)
T KOG1029|consen 543 IRQAIKDQLDELSKETESKLNEIDIFNNQLKELKEDVNSQQLAKEELYK 591 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444455555666655555555555555555555544
No 62
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=96.40 E-value=3.2 Score=49.33 Aligned_cols=48 Identities=10% Similarity=0.214 Sum_probs=26.6
Q ss_pred hhHhhHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhHHHHHHHHHH
Q 004356 507 STFGDLNSEVSKHSHALEDL-FKGIASEADSLLNDLQSSLYKQEEKLTA 554 (759)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 554 (759)
..+..+...+...-..++.. +.++..++...|..+...+.....++..
T Consensus 418 ~kL~~~~~~L~~ikr~l~k~~lpgip~~y~~~~~~~~~~i~~l~~~L~~ 466 (569)
T PRK04778 418 EKLERYRNKLHEIKRYLEKSNLPGLPEDYLEMFFEVSDEIEALAEELEE 466 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33555554444444444433 5556666777777777666665555543
No 63
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=96.38 E-value=4.2 Score=50.45 Aligned_cols=175 Identities=15% Similarity=0.225 Sum_probs=81.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 371 KEKDFLIANLLKSEKALVERAIELRTELENAASDVSNLFAKIERKDKIEEGNRILIQMFQSQLTQQLEILHKTVATSVTQ 450 (759)
Q Consensus 371 ~e~e~~i~~l~~~e~~l~~~~~~l~~~l~~~~~~~~~L~~ki~~k~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (759)
..-...|..+++....-..........++...+++.-|+.+-- .+......+--.--..|++++..+++.+...
T Consensus 1106 ~~iTKrIt~LEk~k~~~l~~ikK~ia~lnnlqqElklLRnEK~---Rmh~~~dkVDFSDIEkLE~qLq~~~~kL~dA--- 1179 (1439)
T PF12252_consen 1106 TDITKRITDLEKAKLDNLDSIKKAIANLNNLQQELKLLRNEKI---RMHSGTDKVDFSDIEKLEKQLQVIHTKLYDA--- 1179 (1439)
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHhHHH---hhccCCCcccHHHHHHHHHHHHHhhhhhHHH---
Confidence 3334444444443333344445556666666667666665422 2221111111111123555566666555432
Q ss_pred HHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHH-----hhHhhHHHHHHHHHHHHHH
Q 004356 451 QEQQLKDMEEDMQSFVSTKAEATEELRGRLGKLKAMYGSGIKALDGIAGELDGNSR-----STFGDLNSEVSKHSHALED 525 (759)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 525 (759)
.+-.+.+.+........+.+.+++..+..+.+.+..... +++-+-...+.+. +.++.++..+...-+.+..
T Consensus 1180 ---yl~eitKqIsaLe~e~PKnltdvK~missf~d~laeiE~-LrnErIKkHGaSkePLDlSDlDkLk~~LQ~iNQ~LV~ 1255 (1439)
T PF12252_consen 1180 ---YLVEITKQISALEKEKPKNLTDVKSMISSFNDRLAEIEF-LRNERIKKHGASKEPLDLSDLDKLKGQLQKINQNLVK 1255 (1439)
T ss_pred ---HHHHHHHHHHHHHhhCCCchhhHHHHHHHHHhhhhHHHH-HHHHHhhccCCCCCccchhhHHHHHHHHHHHHHHHHH
Confidence 222333344333344555667888888877665555433 3322222222221 3455555555554444433
Q ss_pred HHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 526 LFKGIASEADSLLNDLQSSLYKQEEKLTAYAQQQREAHSRAVE 568 (759)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 568 (759)
.+++++..+++..+ ...|.. |....+..++
T Consensus 1256 ----------~LIn~iR~slnqme--~~tf~~-q~~eiq~n~~ 1285 (1439)
T PF12252_consen 1256 ----------ALINTIRVSLNQME--VKTFEE-QEKEIQQNLQ 1285 (1439)
T ss_pred ----------HHHHHHHHHHHHhh--hhhhhh-hhHHHHHHHH
Confidence 56666666665544 445544 3333333333
No 64
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.37 E-value=3 Score=48.74 Aligned_cols=29 Identities=28% Similarity=0.338 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHHHH
Q 004356 358 DLEEKHRQANATIKEKDFLIANLLKSEKA 386 (759)
Q Consensus 358 ~~e~~~~~~~~~l~e~e~~i~~l~~~e~~ 386 (759)
.+...+..++..+++++..+..+......
T Consensus 291 ~~~~~l~~l~~Eie~kEeE~e~lq~~~d~ 319 (581)
T KOG0995|consen 291 HMEKKLEMLKSEIEEKEEEIEKLQKENDE 319 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444433333
No 65
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.25 E-value=2 Score=45.37 Aligned_cols=31 Identities=29% Similarity=0.363 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 298 AEKKAMAEKIERMELESESKDKQLMELQELY 328 (759)
Q Consensus 298 ~e~~~~~~~i~~~~~~l~~~~~~l~~l~~~~ 328 (759)
.+...+..+|..++..++..+..+......+
T Consensus 36 ~e~~~l~rri~~lE~~le~~eerL~~~~~kL 66 (237)
T PF00261_consen 36 AEVASLQRRIQLLEEELERAEERLEEATEKL 66 (237)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3333444444444444443333333333333
No 66
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=96.09 E-value=1.2 Score=42.83 Aligned_cols=108 Identities=21% Similarity=0.323 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Q 004356 303 MAEKIERMELESESKDKQLMELQELYNSQLLLTAELSEKLEKTEKKLEETEHALSDLEEKHRQANATIKEKDFLIANLLK 382 (759)
Q Consensus 303 ~~~~i~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~l~~~e~~~~~~~~~l~e~e~~i~~l~~ 382 (759)
....+..+..+++...+.....+..|+.......+.-..|..++.++..++..+..++.....++..+...+.. ...
T Consensus 22 ~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~s---w~~ 98 (132)
T PF07926_consen 22 AEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEAS---WEE 98 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---HHH
Confidence 34556666677777778888899999999988888888999999999999999999888888887777654433 233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 383 SEKALVERAIELRTELENAASDVSNLFAKIE 413 (759)
Q Consensus 383 ~e~~l~~~~~~l~~~l~~~~~~~~~L~~ki~ 413 (759)
-+..|..+...+...++++.....-||+.|+
T Consensus 99 qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 99 QKEQLEKELSELEQRIEDLNEQNKLLHDQLE 129 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555556666666666666777776665
No 67
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.06 E-value=7.6 Score=50.36 Aligned_cols=70 Identities=19% Similarity=0.343 Sum_probs=37.5
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHH---HHHHHHHHHHHHHHHHHh
Q 004356 419 EEGNRILIQMFQSQLTQQLEILHKTVATSVTQQEQQLKDMEEDMQSFVSTKA---EATEELRGRLGKLKAMYG 488 (759)
Q Consensus 419 ~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~ 488 (759)
..+-...|....+.+...++.+...+.....+...+++.++..+..=+.... ..+..+++++..+...+.
T Consensus 716 ~~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~~~~~~le~~~~~eL~~~GvD~~~I~~l~~~i~~L~~~l~ 788 (1201)
T PF12128_consen 716 RNELKAQWQELEAELDEQIEQIKQEIAAAKQEAKEQLKELEQQYNQELAGKGVDPERIQQLKQEIEQLEKELK 788 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555556666666666655555555666666665555443322 234566666665555443
No 68
>PRK04863 mukB cell division protein MukB; Provisional
Probab=95.92 E-value=9.5 Score=50.32 Aligned_cols=51 Identities=25% Similarity=0.162 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHhhhHhHHHHhhhhhhhhh
Q 004356 621 ERQLLEKVAELLASSNARKKQLVQMAVQDLRESASSRTSQLQKEMSTMQDSTF 673 (759)
Q Consensus 621 ~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~mq~~~~ 673 (759)
.++|-.+|..+-.-... -.--+.++..|++-....-..-+.=+..||++-.
T Consensus 588 ~~qL~~~i~~l~~~ap~--W~~a~~al~~L~eq~g~~~~~~~~v~~~mq~~~~ 638 (1486)
T PRK04863 588 LEQLQARIQRLAARAPA--WLAAQDALARLREQSGEEFEDSQDVTEYMQQLLE 638 (1486)
T ss_pred HHHHHHHHHHHHHhChH--HHhhHHHHHHHHHhcchhhcCHHHHHHHHHHHHH
Confidence 34454555554443333 2224455666665555444444444555665533
No 69
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=95.91 E-value=2 Score=42.40 Aligned_cols=22 Identities=23% Similarity=0.436 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHhHHhhhHhH
Q 004356 640 KQLVQMAVQDLRESASSRTSQL 661 (759)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~ 661 (759)
...+..++..+++.+......+
T Consensus 150 ~~~i~~~~~~l~~~l~~~~~~l 171 (202)
T PF01442_consen 150 EAKISERLEELRESLEEKAEEL 171 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444443333333
No 70
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=95.77 E-value=6.2 Score=47.02 Aligned_cols=97 Identities=22% Similarity=0.250 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 329 NSQLLLTAELSEKLEKTEKKLEETEHALSDLEEKHR--QANATIKEKDFLIANLLKSEKALVERAIELRTELENAASDVS 406 (759)
Q Consensus 329 ~~~~~~~~~l~~~l~~~~~~l~~~~~~l~~~e~~~~--~~~~~l~e~e~~i~~l~~~e~~l~~~~~~l~~~l~~~~~~~~ 406 (759)
+...+....++++.+.+-++-..++..+..++..+. ..+..+++++.+|..+..-- ..|-+..-.-..-|.
T Consensus 405 ~e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EG-------EkLSK~ql~qs~iIk 477 (961)
T KOG4673|consen 405 EEYHQRVATLEKKVQALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQLMAEG-------EKLSKKQLAQSAIIK 477 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH-------HHhHHHHHHHHHHHH
Confidence 334455666777777776666777777776666653 23346788888887765433 333333323334467
Q ss_pred HHHHHHHhHHHHHHhhHHHHHHHHHH
Q 004356 407 NLFAKIERKDKIEEGNRILIQMFQSQ 432 (759)
Q Consensus 407 ~L~~ki~~k~~~~~~n~~~~~~~~~~ 432 (759)
.|.+|+..-..+...+-..+..++++
T Consensus 478 KLRAk~ke~etl~~K~ge~i~~L~sE 503 (961)
T KOG4673|consen 478 KLRAKIKEAETLEEKKGELITKLQSE 503 (961)
T ss_pred HHHHHhhhhhHHHHHhhhHHHHHHHH
Confidence 77777777666666666677666555
No 71
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=95.65 E-value=4.4 Score=48.94 Aligned_cols=105 Identities=26% Similarity=0.275 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 320 QLMELQELYNSQLLLTAELSEKLEKTEKKLEETEHALSDLEEKHRQANATIKEKDFLIANLLKSEKALVERAIELRTELE 399 (759)
Q Consensus 320 ~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~l~~~e~~~~~~~~~l~e~e~~i~~l~~~e~~l~~~~~~l~~~l~ 399 (759)
++..|+.+...++.+..+..+.++.++..-+++-+.+...+.+.+.+...+.+++.. +.+.......+..+++-+++
T Consensus 428 El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~---l~~~kq~~d~e~~rik~ev~ 504 (861)
T PF15254_consen 428 ELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQKEENKRLRKMFQEKDQE---LLENKQQFDIETTRIKIEVE 504 (861)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHH
Confidence 566777777777777777777777777777788888888888888888888887765 34445555566778888999
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhHHHHHHHH
Q 004356 400 NAASDVSNLFAKIERKDKIEEGNRILIQMFQ 430 (759)
Q Consensus 400 ~~~~~~~~L~~ki~~k~~~~~~n~~~~~~~~ 430 (759)
++...+..++-|++ ..+.+|..+--.++
T Consensus 505 eal~~~k~~q~kLe---~sekEN~iL~itlr 532 (861)
T PF15254_consen 505 EALVNVKSLQFKLE---ASEKENQILGITLR 532 (861)
T ss_pred HHHHHHHHHhhhHH---HHHhhhhHhhhHHH
Confidence 99999999999988 56667776655544
No 72
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.58 E-value=9 Score=47.59 Aligned_cols=35 Identities=34% Similarity=0.429 Sum_probs=27.4
Q ss_pred cEEEEecCHHHHHHHHHhchhccccccccccCCCC
Q 004356 87 LEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSS 121 (759)
Q Consensus 87 L~e~~V~s~~e~~~lL~~G~~~R~~~~T~~N~~SS 121 (759)
|-.|.|.+..-+-.+|++|.-.|++.--.+|.-.|
T Consensus 548 LynvVv~te~tgkqLLq~g~l~rRvTiIPLnKI~s 582 (1174)
T KOG0933|consen 548 LYNVVVDTEDTGKQLLQRGNLRRRVTIIPLNKIQS 582 (1174)
T ss_pred ceeEEeechHHHHHHhhcccccceeEEEechhhhh
Confidence 44678888889999999999999877666665544
No 73
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=95.43 E-value=10 Score=47.17 Aligned_cols=53 Identities=25% Similarity=0.295 Sum_probs=32.6
Q ss_pred CCChHhHHHHHHHHHHhccCccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhCCCc
Q 004356 228 IHCLEETLSTLDYAHRAKNIKNKPEINQKMMKSAMIKDLYSEIDRLKQEVYAAREKNGIY 287 (759)
Q Consensus 228 ~~~~eETlsTL~fA~rak~Ikn~p~vN~~~~~~~li~~l~~Ei~~Lk~el~~~r~k~g~~ 287 (759)
..+++.|+.+|+---| .+ .... ..+...+.+++.|++.|+.++..+|+.++-.
T Consensus 172 ~~hL~velAdle~kir--~L--rqEl---EEK~enll~lr~eLddleae~~klrqe~~e~ 224 (1195)
T KOG4643|consen 172 NLHLEVELADLEKKIR--TL--RQEL---EEKFENLLRLRNELDDLEAEISKLRQEIEEF 224 (1195)
T ss_pred hHHHHHHHHHHHHHHH--HH--HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888877752111 11 1111 2345677888888888888888888765433
No 74
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=95.14 E-value=7.8 Score=44.21 Aligned_cols=38 Identities=26% Similarity=0.237 Sum_probs=21.6
Q ss_pred HHHHhHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 004356 461 DMQSFVSTKAEATEELRGRLGKLKAMYGSGIKALDGIA 498 (759)
Q Consensus 461 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~ 498 (759)
.+..-+......+.+|...-..+++.+.+....+...+
T Consensus 214 ~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e~~aA~~r 251 (420)
T COG4942 214 QLNSELSADQKKLEELRANESRLKNEIASAEAAAAKAR 251 (420)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555666666666666666666654444333
No 75
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.01 E-value=6.3 Score=42.40 Aligned_cols=44 Identities=16% Similarity=0.390 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHH
Q 004356 334 LTAELSEKLEKTEKKLEETEHALSDLEEKHRQANATIKEKDFLI 377 (759)
Q Consensus 334 ~~~~l~~~l~~~~~~l~~~~~~l~~~e~~~~~~~~~l~e~e~~i 377 (759)
+..++..+...+++++.+++..+..++.++..++..|.+++...
T Consensus 60 qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l 103 (265)
T COG3883 60 QIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELL 103 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444445555555555555555555555544443
No 76
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=95.00 E-value=15 Score=46.68 Aligned_cols=23 Identities=30% Similarity=0.332 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 004356 259 KSAMIKDLYSEIDRLKQEVYAAR 281 (759)
Q Consensus 259 ~~~li~~l~~Ei~~Lk~el~~~r 281 (759)
...+.++|...|.+++.+...++
T Consensus 463 ~~~~~keL~e~i~~lk~~~~el~ 485 (1317)
T KOG0612|consen 463 LEEMDKELEETIEKLKSEESELQ 485 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566788888888877665554
No 77
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=94.95 E-value=6.8 Score=43.06 Aligned_cols=36 Identities=11% Similarity=0.201 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHHHHhHH------HHHHHHHHHHHHHHHHHH
Q 004356 529 GIASEADSLLNDLQSSLY------KQEEKLTAYAQQQREAHS 564 (759)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~------~~~~e~~~~~~~~~~~~~ 564 (759)
..+-|+..+||+|.+--. ..++.-..|+-.+-+.|-
T Consensus 280 nysLdcRrLfDsLreEnlgmlfVYs~k~qRllFAN~~fk~wt 321 (401)
T PF06785_consen 280 NYSLDCRRLFDSLREENLGMLFVYSPKSQRLLFANSQFKTWT 321 (401)
T ss_pred cchHHHHHHHhhhcccccceEEEecchhhHHHHhHHHHHHHh
Confidence 346677778887765321 122233456665555554
No 78
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=94.67 E-value=8 Score=42.02 Aligned_cols=31 Identities=13% Similarity=0.261 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 338 LSEKLEKTEKKLEETEHALSDLEEKHRQANA 368 (759)
Q Consensus 338 l~~~l~~~~~~l~~~~~~l~~~e~~~~~~~~ 368 (759)
+...+..++..+..+......++..+..+..
T Consensus 52 ye~el~~lr~~id~~~~eka~l~~e~~~l~~ 82 (312)
T PF00038_consen 52 YEEELRELRRQIDDLSKEKARLELEIDNLKE 82 (312)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHhHHhhhhHHHHhhHHhhhhhhHHH
Confidence 3344444444444444444444433333333
No 79
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.65 E-value=12 Score=43.97 Aligned_cols=17 Identities=6% Similarity=0.171 Sum_probs=6.3
Q ss_pred HhhHHHHHHhHHHHHHH
Q 004356 581 FKTLDMHASNLTKIVEE 597 (759)
Q Consensus 581 ~~~~~~~~~~l~~~~~~ 597 (759)
.+.+......+++.+++
T Consensus 548 i~~i~~~k~~iqs~le~ 564 (581)
T KOG0995|consen 548 IDQISDFKVSIQSSLEN 564 (581)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 80
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=94.56 E-value=14 Score=44.26 Aligned_cols=15 Identities=40% Similarity=0.401 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHH
Q 004356 265 DLYSEIDRLKQEVYA 279 (759)
Q Consensus 265 ~l~~Ei~~Lk~el~~ 279 (759)
.++.|+..||.++..
T Consensus 427 alr~e~kslk~ela~ 441 (961)
T KOG4673|consen 427 ALRREQKSLKKELAA 441 (961)
T ss_pred HHHHHHHHHHHHHHH
Confidence 355666666666653
No 81
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=94.39 E-value=17 Score=44.72 Aligned_cols=19 Identities=21% Similarity=0.366 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 004356 265 DLYSEIDRLKQEVYAAREK 283 (759)
Q Consensus 265 ~l~~Ei~~Lk~el~~~r~k 283 (759)
.|+..+..|..+|..+|.+
T Consensus 228 eLr~QvrdLtEkLetlR~k 246 (1243)
T KOG0971|consen 228 ELRAQVRDLTEKLETLRLK 246 (1243)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 4777788888888777765
No 82
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=94.38 E-value=12 Score=42.90 Aligned_cols=55 Identities=11% Similarity=0.071 Sum_probs=32.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 004356 509 FGDLNSEVSKHSHALEDLFKGIASEADSLLNDLQSSLYKQEEKLTAYAQQQREAH 563 (759)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 563 (759)
++.+-+.+......++.-|...++.+...=+.--.-+.+++.|+..+..++....
T Consensus 492 ~~~~i~El~~~l~~~e~~L~~a~s~~~~~ke~~e~e~~a~~~E~eklE~el~~ln 546 (622)
T COG5185 492 LKHDINELTQILEKLELELSEANSKFELSKEENERELVAQRIEIEKLEKELNDLN 546 (622)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333444445555566666666666655555555666667778877776555443
No 83
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.30 E-value=21 Score=45.28 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 004356 390 RAIELRTELENAASDVSNLFAKIER 414 (759)
Q Consensus 390 ~~~~l~~~l~~~~~~~~~L~~ki~~ 414 (759)
+-...+..+......+..|..+++.
T Consensus 399 ~~vk~~E~lK~~~~k~kKleke~ek 423 (1293)
T KOG0996|consen 399 EDVKREEKLKRLTSKIKKLEKEIEK 423 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555556666555553
No 84
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=94.18 E-value=23 Score=45.18 Aligned_cols=42 Identities=14% Similarity=0.127 Sum_probs=21.3
Q ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 004356 457 DMEEDMQSFVSTKAEATEELRGRLGKLKAMYGSGIKALDGIA 498 (759)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~ 498 (759)
.....+.++.........++.+.+..++..+.+..+.+...-
T Consensus 602 ~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~ 643 (1317)
T KOG0612|consen 602 KENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGK 643 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhh
Confidence 334444445544444555555555555555555554444333
No 85
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=93.88 E-value=19 Score=43.24 Aligned_cols=37 Identities=14% Similarity=0.175 Sum_probs=16.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004356 536 SLLNDLQSSLYKQEEKLTAYAQQQREAHSRAVENARSVS 574 (759)
Q Consensus 536 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 574 (759)
.||.+.++.-...+. --.|+. +++.+..-++.+...-
T Consensus 538 lifrdAKkDe~~rka-YK~La~-lh~~c~~Li~~v~~tG 574 (594)
T PF05667_consen 538 LIFRDAKKDEAARKA-YKLLAS-LHENCSQLIETVEETG 574 (594)
T ss_pred HHHHHhhcCHHHHHH-HHHHHH-HHHHHHHHHHHHHHhh
Confidence 455555544433222 123443 5555555555444433
No 86
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=93.64 E-value=13 Score=40.54 Aligned_cols=178 Identities=16% Similarity=0.183 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH
Q 004356 390 RAIELRTELENAASDVSNLFAKIERKDKIEEGNRILIQMFQSQLTQQLEILHKTVATSV------TQQEQQLKDMEEDMQ 463 (759)
Q Consensus 390 ~~~~l~~~l~~~~~~~~~L~~ki~~k~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 463 (759)
.+......|..+..+...|..+++....-...-..-+..|++.++..+.+......+.. ..-....-.+...|.
T Consensus 57 Ti~qy~~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkmn 136 (305)
T PF14915_consen 57 TIFQYNGQLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKMN 136 (305)
T ss_pred HHHHHhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHhc
Confidence 33334444444455555555555443333232333333444445555444443322211 111222223344444
Q ss_pred HhHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhH--HhhHhhHHHHHHHHHHHHHHHHHhhHH---HHHHHH
Q 004356 464 SFVSTKAEATEELRGRLGKLKAMYGSGIKALDGIAGELDGNS--RSTFGDLNSEVSKHSHALEDLFKGIAS---EADSLL 538 (759)
Q Consensus 464 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 538 (759)
.-++......+-|.++++++.-.+++..-.+..+++.+..+. ...++.=.+........++.+|..-.. .+..=-
T Consensus 137 ~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kq 216 (305)
T PF14915_consen 137 SDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQ 216 (305)
T ss_pred chHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 444444444556667777777777777667777777666654 233333334444555556666644322 222233
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 539 NDLQSSLYKQEEKLTAYAQQQREAHSRAV 567 (759)
Q Consensus 539 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 567 (759)
+.+...|+..+.|-..+++|+-.+..+..
T Consensus 217 es~eERL~QlqsEN~LLrQQLddA~~K~~ 245 (305)
T PF14915_consen 217 ESLEERLSQLQSENMLLRQQLDDAHNKAD 245 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67778888888888899998888887643
No 87
>PRK09039 hypothetical protein; Validated
Probab=93.28 E-value=17 Score=40.71 Aligned_cols=17 Identities=29% Similarity=0.223 Sum_probs=9.7
Q ss_pred EeecCCCCCChHhHHHHHHH
Q 004356 221 IATVSPSIHCLEETLSTLDY 240 (759)
Q Consensus 221 IatVSP~~~~~eETlsTL~f 240 (759)
=+.|||+ |=+.++||=+
T Consensus 12 ~~~~wpg---~vd~~~~ll~ 28 (343)
T PRK09039 12 GVDYWPG---FVDALSTLLL 28 (343)
T ss_pred CCCCCch---HHHHHHHHHH
Confidence 3567776 4455666543
No 88
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=93.06 E-value=16 Score=39.90 Aligned_cols=30 Identities=23% Similarity=0.328 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Q 004356 473 TEELRGRLGKLKAMYGSGIKALDGIAGELD 502 (759)
Q Consensus 473 ~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~ 502 (759)
..++.++...|+..+......++.+...+.
T Consensus 202 ~De~Rkeade~he~~ve~~~~~~e~~ee~~ 231 (294)
T COG1340 202 ADELRKEADELHEEFVELSKKIDELHEEFR 231 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 346666666666665555555544444433
No 89
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=92.96 E-value=25 Score=41.89 Aligned_cols=24 Identities=25% Similarity=0.277 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 423 RILIQMFQSQLTQQLEILHKTVAT 446 (759)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~ 446 (759)
..++...+..+-.++.+++..+..
T Consensus 214 P~l~~~l~~~~P~ql~eL~~gy~~ 237 (560)
T PF06160_consen 214 PKLYKELQKEFPDQLEELKEGYRE 237 (560)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344445555555555555555443
No 90
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=92.86 E-value=29 Score=42.43 Aligned_cols=26 Identities=19% Similarity=0.265 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Q 004356 531 ASEADSLLNDLQSSLYKQEEKLTAYA 556 (759)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~e~~~~~ 556 (759)
-.|++.=++.++..+..++.|+..+.
T Consensus 624 Lg~akrq~ei~~~~~~~~d~ei~~lk 649 (697)
T PF09726_consen 624 LGDAKRQLEIAQGQLRKKDKEIEELK 649 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666665554333
No 91
>PRK03918 chromosome segregation protein; Provisional
Probab=92.80 E-value=33 Score=42.78 Aligned_cols=15 Identities=33% Similarity=0.625 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHH
Q 004356 263 IKDLYSEIDRLKQEV 277 (759)
Q Consensus 263 i~~l~~Ei~~Lk~el 277 (759)
++.+..++..+...+
T Consensus 171 ~~~~~~~~~~l~~~l 185 (880)
T PRK03918 171 IKEIKRRIERLEKFI 185 (880)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344455555555444
No 92
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=92.38 E-value=31 Score=41.60 Aligned_cols=51 Identities=12% Similarity=0.062 Sum_probs=29.2
Q ss_pred hhhhhHHhHHHHHHhhhhhhhhhhhhhhhhhch---HHHHHHHHHhhhhchHHH
Q 004356 671 STFSVKAEWSAHMNKTESHYLEDTSAVENGKKD---LEVVLQNCLKQAKMGAQQ 721 (759)
Q Consensus 671 ~~~~~k~~~~~~~~~~e~~~~e~~~~~~~~~~~---m~~~lq~c~~~~~~~~~~ 721 (759)
|....-......|++-++.|.+-..=.|.-+.+ +|-+.-|-.+-+++-+.+
T Consensus 404 V~~E~h~aLq~amekLq~~f~~~~~e~adl~e~~e~le~~~~ql~~et~ti~ey 457 (617)
T PF15070_consen 404 VPGETHQALQEAMEKLQSRFMDLMEEKADLKERVEKLEHRFIQLSGETDTIGEY 457 (617)
T ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccCccchhhh
Confidence 344444445567888888888766665555444 444444444455554443
No 93
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=92.14 E-value=38 Score=41.97 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=9.5
Q ss_pred HhHHHHhhhhhhhhhhhHHhHH
Q 004356 659 SQLQKEMSTMQDSTFSVKAEWS 680 (759)
Q Consensus 659 ~~~~~~~s~mq~~~~~~k~~~~ 680 (759)
+.+...+++.|++-.+--..+.
T Consensus 681 d~l~~qL~ssq~~L~e~d~~L~ 702 (775)
T PF10174_consen 681 DQLKAQLESSQQSLMERDQELN 702 (775)
T ss_pred HHHHHHHHHHHHHHhhHHHHHH
Confidence 3344444555554433333333
No 94
>PHA02562 46 endonuclease subunit; Provisional
Probab=92.06 E-value=30 Score=40.65 Aligned_cols=21 Identities=19% Similarity=0.347 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004356 261 AMIKDLYSEIDRLKQEVYAAR 281 (759)
Q Consensus 261 ~li~~l~~Ei~~Lk~el~~~r 281 (759)
..++++..++..++.++....
T Consensus 174 ~~~~e~~~~i~~l~~~i~~l~ 194 (562)
T PHA02562 174 DKIRELNQQIQTLDMKIDHIQ 194 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666555443
No 95
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=91.94 E-value=29 Score=40.28 Aligned_cols=78 Identities=14% Similarity=0.192 Sum_probs=39.4
Q ss_pred CCCceeeEEeecCCCCCChHhHHHHHHHHHHhccCccccccccc--cchHHHHHHHHHHHHHHHHHHHHHHhhCCCcCCc
Q 004356 213 GGKTKTCIIATVSPSIHCLEETLSTLDYAHRAKNIKNKPEINQK--MMKSAMIKDLYSEIDRLKQEVYAAREKNGIYIPR 290 (759)
Q Consensus 213 GGnskT~mIatVSP~~~~~eETlsTL~fA~rak~Ikn~p~vN~~--~~~~~li~~l~~Ei~~Lk~el~~~r~k~g~~~~~ 290 (759)
.|++..+=|.--+|++.-.....+++-=+..-..+..+-..... .--...+.+++.++......+...+.++|+..+.
T Consensus 118 ~~~s~vi~Is~~~~dP~~Aa~i~n~l~~~yi~~~~~~~~~~~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~ 197 (498)
T TIGR03007 118 AGRDNLFTISYEDKDPELAKDVVQTLLTIFVEETLGSKRQDSDSAQRFIDEQIKTYEKKLEAAENRLKAFKQENGGILPD 197 (498)
T ss_pred cCCCCeEEEEeeCCCHHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCcc
Confidence 34455555666677766555555554212111111111100000 0012334566777777777777888889887654
No 96
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=91.84 E-value=6.5 Score=45.46 Aligned_cols=110 Identities=22% Similarity=0.243 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCcCCcch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 264 KDLYSEIDRLKQEVYAAREKNGIYIPRDR--YLQEEAEKKAMAEKIERMELESESKDKQLMELQELYNSQLLLTAELSEK 341 (759)
Q Consensus 264 ~~l~~Ei~~Lk~el~~~r~k~g~~~~~~~--~~~~e~e~~~~~~~i~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~ 341 (759)
+.+..|+..|+.+...++...-+|...++ |.....+.+....++..+...++.+.+++...++..-.+..+..+++++
T Consensus 169 k~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk 248 (596)
T KOG4360|consen 169 KPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKK 248 (596)
T ss_pred CChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 34455556666555555443333322222 2223444555566677777777777777777777776666677777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHH
Q 004356 342 LEKTEKKLEETEHALSDLEEKHRQANATIKEK 373 (759)
Q Consensus 342 l~~~~~~l~~~~~~l~~~e~~~~~~~~~l~e~ 373 (759)
+....-+.+++...|.......+++...++|.
T Consensus 249 ~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~El 280 (596)
T KOG4360|consen 249 IKYLRHEKEELDEHLQAYKDAQRQLTAELEEL 280 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 66666666666666666655555555444443
No 97
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=91.77 E-value=17 Score=44.71 Aligned_cols=46 Identities=17% Similarity=0.193 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 315 ESKDKQLMELQELYNSQLLLTAELSEKLEKTEKKLEETEHALSDLE 360 (759)
Q Consensus 315 ~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~l~~~e 360 (759)
...++.+..++..++.|..+..++.++.+.++..-+.+.+.+.+..
T Consensus 561 ~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~ 606 (717)
T PF10168_consen 561 EEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAK 606 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555555555555554444444344444444333
No 98
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=91.36 E-value=0.046 Score=64.67 Aligned_cols=81 Identities=46% Similarity=0.486 Sum_probs=66.7
Q ss_pred hchhccccccccccCCCCCcceEEEEEEEEeecCCCCCcceEEeeeccccccCCCcccCCCCchhhHHHHHHhhhhHHHH
Q 004356 104 KGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSENISRSGAREGRAREAGEINKSLLTL 183 (759)
Q Consensus 104 ~G~~~R~~~~T~~N~~SSRSH~IftI~v~~~~~~~~~~~~~~~skL~lVDLAGSEr~~ks~a~g~r~kEa~~INkSLlaL 183 (759)
.....+..+.+..|-+++++|++|+.......... .... +++|||||+||. .+...|.++++...+|++|..+
T Consensus 486 ~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~--~~~~----~n~~~~~~~e~~-~s~~~~~~l~~~~~~~k~l~~~ 558 (568)
T COG5059 486 KASKLRSSASTKLNLRSSRSHSKFRDHLNGSNSST--KELS----LNQVDLAGSERK-VSQSVGELLRETQSLNKSLSSL 558 (568)
T ss_pred hhccchhhcccchhhhhcccchhhhhcccchhhhh--HHHH----hhhhhccccccc-hhhhhHHHHHhhHhhhhccccc
Confidence 55678888999999999999999987764321111 1111 799999999999 9999999999999999999999
Q ss_pred HHHHHHHh
Q 004356 184 GRVINALV 191 (759)
Q Consensus 184 g~VI~aL~ 191 (759)
|.+|.++.
T Consensus 559 ~d~~~~~~ 566 (568)
T COG5059 559 GDVIHALG 566 (568)
T ss_pred hhhhhhcc
Confidence 99998875
No 99
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=91.35 E-value=25 Score=38.39 Aligned_cols=31 Identities=19% Similarity=0.246 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 004356 473 TEELRGRLGKLKAMYGSGIKALDGIAGELDG 503 (759)
Q Consensus 473 ~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~ 503 (759)
+.+|..++..++....+.-+.|..++++.+.
T Consensus 160 ~~el~aei~~lk~~~~e~~eki~~la~eaqe 190 (294)
T COG1340 160 LKELKAEIDELKKKAREIHEKIQELANEAQE 190 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444433
No 100
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=91.31 E-value=40 Score=40.57 Aligned_cols=36 Identities=19% Similarity=0.359 Sum_probs=21.2
Q ss_pred HHHhHhhHHHHHHhHHHHHHHHHHhhhhhHHHHHHHH
Q 004356 577 TVNFFKTLDMHASNLTKIVEEAQTVNDQKLFEFEKKF 613 (759)
Q Consensus 577 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~ 613 (759)
.-+.+-.|++..+.|.+.++++. .....+-+++.++
T Consensus 552 aYK~La~lh~~c~~Li~~v~~tG-~~~rEirdLe~qI 587 (594)
T PF05667_consen 552 AYKLLASLHENCSQLIETVEETG-TISREIRDLEEQI 587 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHH
Confidence 34566667777777777777774 3344444444433
No 101
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=91.25 E-value=32 Score=39.30 Aligned_cols=79 Identities=13% Similarity=0.146 Sum_probs=45.2
Q ss_pred CCCceeeEEeecCCCCCChHhHHHHHHHHHHhc--cCccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhCCCcCCc
Q 004356 213 GGKTKTCIIATVSPSIHCLEETLSTLDYAHRAK--NIKNKPEINQKMMKSAMIKDLYSEIDRLKQEVYAAREKNGIYIPR 290 (759)
Q Consensus 213 GGnskT~mIatVSP~~~~~eETlsTL~fA~rak--~Ikn~p~vN~~~~~~~li~~l~~Ei~~Lk~el~~~r~k~g~~~~~ 290 (759)
.+++..+-|..-+|++.-.....+++-=+.... ..++....+...--...+..++.++......+...|.++|++.+.
T Consensus 128 ~~~s~ii~is~~~~dp~~A~~i~n~~~~~y~~~~~~~~~~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~ 207 (444)
T TIGR03017 128 SRESSVISIEFSGVDPRFAATVANAFAQAYIDTNIELKVEPAQKAALWFVQQIAALREDLARAQSKLSAYQQEKGIVSSD 207 (444)
T ss_pred cCCceEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccC
Confidence 456666667776777665555555443222222 222222111111123456677778888888888889999988665
Q ss_pred c
Q 004356 291 D 291 (759)
Q Consensus 291 ~ 291 (759)
+
T Consensus 208 ~ 208 (444)
T TIGR03017 208 E 208 (444)
T ss_pred c
Confidence 4
No 102
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=90.98 E-value=14 Score=35.32 Aligned_cols=96 Identities=25% Similarity=0.327 Sum_probs=45.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhCCCcCCcchhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 004356 259 KSAMIKDLYSEIDRLKQEVYAAREKNGIYIPRDRYLQEEAEKKAMAEKIERMELESESK---DKQLMELQELYNSQLLLT 335 (759)
Q Consensus 259 ~~~li~~l~~Ei~~Lk~el~~~r~k~g~~~~~~~~~~~e~e~~~~~~~i~~~~~~l~~~---~~~l~~l~~~~~~~~~~~ 335 (759)
...++..|...|.++..|+..+++. +...+.++..+.++|-.+....+.. .+++..++..+.......
T Consensus 14 ~~~~ve~L~s~lr~~E~E~~~l~~e---------l~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry 84 (120)
T PF12325_consen 14 SVQLVERLQSQLRRLEGELASLQEE---------LARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRY 84 (120)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777776653 2233444445555554443333222 233333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 336 AELSEKLEKTEKKLEETEHALSDLEEKH 363 (759)
Q Consensus 336 ~~l~~~l~~~~~~l~~~~~~l~~~e~~~ 363 (759)
..+..-+-...+.+++++..+.+++..+
T Consensus 85 ~t~LellGEK~E~veEL~~Dv~DlK~my 112 (120)
T PF12325_consen 85 QTLLELLGEKSEEVEELRADVQDLKEMY 112 (120)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444444444444433
No 103
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=90.94 E-value=24 Score=37.39 Aligned_cols=88 Identities=22% Similarity=0.318 Sum_probs=56.2
Q ss_pred HHhHhhHHHHHHhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 004356 578 VNFFKTLDMHASNLTKIVEEAQTVNDQKLFEFEKKFEESAANE-------ERQLLEKVAELLASSNARKKQLVQMAVQDL 650 (759)
Q Consensus 578 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-------~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~ 650 (759)
...++++.++..++...++.+-......+..+...+++.-... +..+++.|+.|-+.......+|...- +.|
T Consensus 149 ~~i~krl~e~~~~l~~~i~~Ek~~Re~~~~~l~~~le~~~~~~~~~~e~f~~~v~~Ei~~lk~~l~~e~~~R~~~D-d~I 227 (247)
T PF06705_consen 149 ENILKRLEEEENRLQEKIEKEKNTRESKLSELRSELEEVKRRREKGDEQFQNFVLEEIAALKNALALESQEREQSD-DDI 227 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hHH
Confidence 3466777778888888888877777777777777665554332 34477788888887777777776543 333
Q ss_pred HHhHHhhhHhHHHHhh
Q 004356 651 RESASSRTSQLQKEMS 666 (759)
Q Consensus 651 ~~~~~~~~~~~~~~~s 666 (759)
-.++....+.||.++.
T Consensus 228 v~aln~yt~~lQ~~L~ 243 (247)
T PF06705_consen 228 VQALNHYTKALQDGLR 243 (247)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3344444455555443
No 104
>PF01540 Lipoprotein_7: Adhesin lipoprotein; InterPro: IPR002520 This family consists of the p50 and variable adherence-associated antigen (Vaa) adhesins from Mycoplasma hominis. M. hominis is a mycoplasma associated with human urogenital diseases, pneumonia, and septic arthritis []. An adhesin is a cell surface molecule that mediates adhesion to other cells or to the surrounding surface or substrate. The Vaa antigen is a 50kDa surface lipoprotein that has four tandem repetitive DNA sequences encoding a periodic peptide structure, and is highly immunogenic in the human host []. p50 is also a 50kDa lipoprotein, having three repeats A,B and C, that may be a tetramer of 191kDa in its native environment [].
Probab=90.78 E-value=26 Score=37.56 Aligned_cols=121 Identities=15% Similarity=0.205 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHhhHhhHHHHH
Q 004356 437 LEILHKTVATSVTQQEQQLKDMEEDMQSFVSTKAEATEELRGRLGKLKAMYGSGIKALDGIAGELDGNSRSTFGDLNSEV 516 (759)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 516 (759)
+.+-.+.+.+|...+..+-.-.-..+.+|-.-..--.+.++.+.++..+.....+.+|+.++..+ ..+..+...+
T Consensus 176 L~~KS~eI~tFttv~s~k~eF~L~ELESFKEinTtwfNgmksEWA~V~~AwkneLsEINSI~~gv-----EeLkKLAqEI 250 (353)
T PF01540_consen 176 LNKKSREIDTFTTVQSTKEEFVLNELESFKEINTTWFNGMKSEWARVQEAWKNELSEINSIIKGV-----EELKKLAQEI 250 (353)
T ss_pred HHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
Confidence 33444555666544444433334455555544444455666666666666666666666655533 3456666667
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 004356 517 SKHSHALEDLFKGIASEADSLLNDLQSSLYKQEEKLTAYAQQQREA 562 (759)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 562 (759)
..|...+..-...+..-|+-.-..-.....--++++..|++|+-.+
T Consensus 251 ss~Sn~lk~TIseLEKkFkIdd~tn~~e~k~fK~qlE~ladqLl~k 296 (353)
T PF01540_consen 251 SSHSNKLKATISELEKKFKIDDSTNKEEMKKFKNQLENLADQLLEK 296 (353)
T ss_pred HHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHh
Confidence 7777776665544444443222212222222455566666655443
No 105
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=90.73 E-value=59 Score=41.49 Aligned_cols=59 Identities=10% Similarity=0.263 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhHHHH---HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhh
Q 004356 444 VATSVTQQEQQLKDMEEDMQSFVSTKAEA---TEELRGRLGKLKAMYGSGIKALDGIAGELDGN 504 (759)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 504 (759)
....+++-.+.++.+...+..|+...... ++++-+++. .-.+-..-+.|..+..+|+..
T Consensus 1462 s~~q~~~s~~el~~Li~~v~~Flt~~~adp~si~~vA~~vL--~l~lp~tpeqi~~L~~~I~e~ 1523 (1758)
T KOG0994|consen 1462 SRSQMEESNRELRNLIQQVRDFLTQPDADPDSIEEVAEEVL--ALELPLTPEQIQQLTGEIQER 1523 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--hccCCCCHHHHHHHHHHHHHH
Confidence 33344556677778888888888664443 334444442 223333444455555555444
No 106
>PHA02562 46 endonuclease subunit; Provisional
Probab=90.72 E-value=40 Score=39.60 Aligned_cols=18 Identities=22% Similarity=0.076 Sum_probs=9.7
Q ss_pred cCHHHHHHHHHhchhccc
Q 004356 93 TTADEIYKILEKGSAKRR 110 (759)
Q Consensus 93 ~s~~e~~~lL~~G~~~R~ 110 (759)
++.-+++.+.--|...|.
T Consensus 41 Stll~aI~~~l~G~~~~~ 58 (562)
T PHA02562 41 STMLEALTFALFGKPFRD 58 (562)
T ss_pred HHHHHHHHHHHcCCCcCc
Confidence 445566666555654443
No 107
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=90.54 E-value=48 Score=40.18 Aligned_cols=10 Identities=40% Similarity=0.611 Sum_probs=5.1
Q ss_pred HHHHHHHHHH
Q 004356 270 IDRLKQEVYA 279 (759)
Q Consensus 270 i~~Lk~el~~ 279 (759)
+++|+.++..
T Consensus 184 ~~~L~~dl~~ 193 (650)
T TIGR03185 184 IDRLAGDLTN 193 (650)
T ss_pred HHHHHHHHHH
Confidence 4555555544
No 108
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.43 E-value=38 Score=38.89 Aligned_cols=44 Identities=23% Similarity=0.252 Sum_probs=19.8
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHhhCCCCCCCCCCccccccccccCCCcee
Q 004356 169 RAREAGEINKSLLTLGRVINALVEHSGHVPYRDSKLTRLLRDSLGGKTKT 218 (759)
Q Consensus 169 r~kEa~~INkSLlaLg~VI~aL~~~~~hIPYRdSKLTrLLqdsLGGnskT 218 (759)
|..+-..=|+--..|..|-..|.+ .||-+| . +=.-|++|.+++|
T Consensus 159 r~q~q~ld~q~pehfqq~~~~l~d---pi~~sd--~-~~~ld~wg~~~~t 202 (521)
T KOG1937|consen 159 RNQEQKLDNQTPEHFQQCNAVLND---PIPNSD--P-RKWLDQWGNSSHT 202 (521)
T ss_pred HHHHHhhhhccHHHHHHHHHHhcC---cccccc--h-hhHHHHHhccCCc
Confidence 444444445555555555544433 233222 1 1122556666665
No 109
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=90.18 E-value=32 Score=37.60 Aligned_cols=104 Identities=18% Similarity=0.230 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 004356 338 LSEKLEKTEKKLEETEHALSDLEEKHRQANATIKEKDFLIANLLKSEKALVERAIELRTELENAASDVSNLFAKIERKDK 417 (759)
Q Consensus 338 l~~~l~~~~~~l~~~~~~l~~~e~~~~~~~~~l~e~e~~i~~l~~~e~~l~~~~~~l~~~l~~~~~~~~~L~~ki~~k~~ 417 (759)
|+.++..+...|.+..-.|..++.++.+++..+++.+....+-....+.....-..+...|-.+..+..-|...++.-.+
T Consensus 163 Le~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~ 242 (305)
T PF14915_consen 163 LEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHN 242 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444555566666666666666554433332222322222233344444444445555555553222
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHH
Q 004356 418 IEEGNRILIQMFQSQLTQQLEILH 441 (759)
Q Consensus 418 ~~~~n~~~~~~~~~~~~~~~~~~~ 441 (759)
-......++..++..+.+.+..++
T Consensus 243 K~~~kek~ViniQ~~f~d~~~~L~ 266 (305)
T PF14915_consen 243 KADNKEKTVINIQDQFQDIVKKLQ 266 (305)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH
Confidence 222223345554544444444444
No 110
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=89.85 E-value=26 Score=36.10 Aligned_cols=30 Identities=13% Similarity=0.338 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhH
Q 004356 343 EKTEKKLEETEHALSDLEEKHRQANATIKE 372 (759)
Q Consensus 343 ~~~~~~l~~~~~~l~~~e~~~~~~~~~l~e 372 (759)
.....++..++..|...+...+.+...+++
T Consensus 64 ~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~ 93 (194)
T PF15619_consen 64 QRHNEEVRVLRERLRKSQEQERELERKLKD 93 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 111
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=89.68 E-value=52 Score=39.29 Aligned_cols=17 Identities=12% Similarity=0.417 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHhH
Q 004356 450 QQEQQLKDMEEDMQSFV 466 (759)
Q Consensus 450 ~~~~~~~~~~~~~~~~~ 466 (759)
.....+..+...++..+
T Consensus 279 ~~~~~~~~i~~~Id~Ly 295 (569)
T PRK04778 279 EAEEKNEEIQERIDQLY 295 (569)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444444
No 112
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=89.64 E-value=62 Score=40.13 Aligned_cols=101 Identities=11% Similarity=0.086 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHH--HHHHHHHhHHhhhHhHHHHhhhhhhh-------------hhhhHHhHHHHHHhh
Q 004356 622 RQLLEKVAELLASSNARKKQLVQM--AVQDLRESASSRTSQLQKEMSTMQDS-------------TFSVKAEWSAHMNKT 686 (759)
Q Consensus 622 ~~l~~~i~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~mq~~-------------~~~~k~~~~~~~~~~ 686 (759)
..||+-|..||-.+.+-|.+.|.. -..+.++-+..+..--++=+|+---| ...++++...++-.+
T Consensus 794 t~lm~aI~~Lv~as~~lQ~EIVasgrgsas~~eFY~kNsrWTEGLISAaKAVa~aatvLVeaAdkvV~~~gkfEeLIVas 873 (980)
T KOG0980|consen 794 TALMEAIMALVKASRELQTEIVASGRGSASPNEFYKKNSRWTEGLISAAKAVAWAATVLVEAADKVVTGTGKFEELIVAS 873 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHhhhHhcCCCCcHHHHHhh
Confidence 578899999999999999999987 33333333333333333333332111 122256666666665
Q ss_pred hhhhhhhhhhhhh------hhchHHHHHHHHHhhhhchHHHH
Q 004356 687 ESHYLEDTSAVEN------GKKDLEVVLQNCLKQAKMGAQQW 722 (759)
Q Consensus 687 e~~~~e~~~~~~~------~~~~m~~~lq~c~~~~~~~~~~w 722 (759)
-..++=++-.|++ +++---.-|+.|.+.++-+....
T Consensus 874 ~EIAAsTaQLVaASrVKA~k~S~~ld~L~~ask~Vtqat~~l 915 (980)
T KOG0980|consen 874 QEIAASTAQLVAASRVKADKDSKKLDALEVASKAVTQATAQL 915 (980)
T ss_pred hHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHH
Confidence 5555555555543 45556677888887766554443
No 113
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=89.58 E-value=59 Score=39.80 Aligned_cols=37 Identities=22% Similarity=0.394 Sum_probs=29.3
Q ss_pred hHHhHH-----HHHHhhhhhhhhhhhhhhhhhchHHHHHHHH
Q 004356 675 VKAEWS-----AHMNKTESHYLEDTSAVENGKKDLEVVLQNC 711 (759)
Q Consensus 675 ~k~~~~-----~~~~~~e~~~~e~~~~~~~~~~~m~~~lq~c 711 (759)
++.+|. +|...-|.+|+-+-++..+...++..-||.-
T Consensus 816 ~~s~wS~ss~stfts~de~~f~~glaalda~iarlq~sl~~~ 857 (861)
T PF15254_consen 816 GKSDWSISSFSTFTSRDEQDFRNGLAALDANIARLQRSLQTG 857 (861)
T ss_pred cccccccccccccccccHHHHHhhHHHhhhhHHHHHHHHHhh
Confidence 346775 4666789999999999999999988877754
No 114
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=89.20 E-value=56 Score=39.02 Aligned_cols=36 Identities=25% Similarity=0.391 Sum_probs=19.7
Q ss_pred HHHHhccCccccccccccchHHHHHHHHHHHHHHHH
Q 004356 240 YAHRAKNIKNKPEINQKMMKSAMIKDLYSEIDRLKQ 275 (759)
Q Consensus 240 fA~rak~Ikn~p~vN~~~~~~~li~~l~~Ei~~Lk~ 275 (759)
|+.+-+..+-.+-.+.--.-..+++.|+.||+.|-+
T Consensus 45 L~e~trefkk~~pe~k~k~~~~llK~yQ~EiD~Ltk 80 (629)
T KOG0963|consen 45 LAEETREFKKNTPEDKLKMVNPLLKSYQSEIDNLTK 80 (629)
T ss_pred HHHhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444443333222222235678889999887754
No 115
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=88.76 E-value=42 Score=36.99 Aligned_cols=139 Identities=21% Similarity=0.279 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHH
Q 004356 349 LEETEHALSDLEEKHRQANATIKEKDFLIANLLKSEKALVERAIELRTELENAASDVSNLFAKIERKDKIEEGNRILIQM 428 (759)
Q Consensus 349 l~~~~~~l~~~e~~~~~~~~~l~e~e~~i~~l~~~e~~l~~~~~~l~~~l~~~~~~~~~L~~ki~~k~~~~~~n~~~~~~ 428 (759)
++.++..+..++++...++............+...|..|+.. ....+..+...+..|...|.+|.+-....+.-+..
T Consensus 162 le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~d---cv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~ 238 (306)
T PF04849_consen 162 LEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLD---CVKQLSEANQQIASLSEELARKTEENRRQQEEITS 238 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHH---HHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555444443333332333444445555433 34566667777888888888887755555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Q 004356 429 FQSQLTQQLEILHKTVATSVTQQEQQLKDMEEDMQSFVSTKAEATEELRGRLGKLKAMYGSGIKALDGIAGELD 502 (759)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~ 502 (759)
+.++ +-+++.++..+..+... +..-+......-..|..++..+++.|.+....+....++++
T Consensus 239 Llsq----ivdlQ~r~k~~~~EnEe--------L~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk 300 (306)
T PF04849_consen 239 LLSQ----IVDLQQRCKQLAAENEE--------LQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELK 300 (306)
T ss_pred HHHH----HHHHHHHHHHHhhhHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4333 33444444433322111 11111222223334555566666666655555555544443
No 116
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.69 E-value=57 Score=38.44 Aligned_cols=70 Identities=20% Similarity=0.254 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHh-HHHHH----HHHHHHHHHHHHHhHHhhhHhHHHHhhhhhhhh-------hhhHHhHHHH
Q 004356 615 ESAANEERQLLEKVAELLAS-SNARK----KQLVQMAVQDLRESASSRTSQLQKEMSTMQDST-------FSVKAEWSAH 682 (759)
Q Consensus 615 ~~~~~~~~~l~~~i~~l~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~s~mq~~~-------~~~k~~~~~~ 682 (759)
..|+.+.-+|-++|.+|-.. ....+ .+-|+..+..|+-....+-+.++.+|+.|.+++ ++|.+.+.+|
T Consensus 411 ~~a~~e~i~lk~ql~~l~~~~n~tde~~~~e~evq~l~~kl~llekasla~l~~evq~~t~ia~~~~~tl~~A~~~lv~~ 490 (772)
T KOG0999|consen 411 AVAVDEMIQLKDQLKALYHQLNYTDEKVQYEKEVQELVEKLRLLEKASLAELEKEVQKATEIAEEGTETLVNAQDELVTF 490 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHhhHHHhHHHHHHHHHHHhcccccchhhhHhHhhh
Confidence 55667777777888877665 22222 334555555555555555566777777776663 4556666666
Q ss_pred HH
Q 004356 683 MN 684 (759)
Q Consensus 683 ~~ 684 (759)
..
T Consensus 491 Sd 492 (772)
T KOG0999|consen 491 SD 492 (772)
T ss_pred hH
Confidence 65
No 117
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=88.36 E-value=45 Score=36.89 Aligned_cols=7 Identities=29% Similarity=0.244 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 004356 183 LGRVINA 189 (759)
Q Consensus 183 Lg~VI~a 189 (759)
|+.|+.|
T Consensus 56 l~~~~~A 62 (325)
T PF08317_consen 56 LEDYVVA 62 (325)
T ss_pred HHHHHHH
Confidence 3334433
No 118
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.88 E-value=44 Score=36.14 Aligned_cols=27 Identities=11% Similarity=0.437 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 338 LSEKLEKTEKKLEETEHALSDLEEKHR 364 (759)
Q Consensus 338 l~~~l~~~~~~l~~~~~~l~~~e~~~~ 364 (759)
++++..+++.++..++..+..++..+.
T Consensus 71 ~~~~i~~~~~eik~l~~eI~~~~~~I~ 97 (265)
T COG3883 71 LQKEIDQSKAEIKKLQKEIAELKENIV 97 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444444444443333
No 119
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=87.87 E-value=86 Score=39.53 Aligned_cols=86 Identities=21% Similarity=0.335 Sum_probs=47.2
Q ss_pred cCCCCCChHhHHHHHHHHHHhccCccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhC-CCcCCcchhHHHHHHHHH
Q 004356 224 VSPSIHCLEETLSTLDYAHRAKNIKNKPEINQKMMKSAMIKDLYSEIDRLKQEVYAAREKN-GIYIPRDRYLQEEAEKKA 302 (759)
Q Consensus 224 VSP~~~~~eETlsTL~fA~rak~Ikn~p~vN~~~~~~~li~~l~~Ei~~Lk~el~~~r~k~-g~~~~~~~~~~~e~e~~~ 302 (759)
..|+...-+-+.-.+.|++|+-.++-.- +-|.++-+-|+.+|..+|.++ |+.+ +.+.-.
T Consensus 246 er~d~~ykerlmDs~fykdRveelkedN------------~vLleekeMLeeQLq~lrarse~~tl--------eseiiq 305 (1195)
T KOG4643|consen 246 ERPDTTYKERLMDSDFYKDRVEELKEDN------------RVLLEEKEMLEEQLQKLRARSEGATL--------ESEIIQ 305 (1195)
T ss_pred hcCCCccchhhhhhHHHHHHHHHHHhhh------------HHHHHHHHHHHHHHHHHHhccccCCh--------HHHHHH
Confidence 4455555566777788888876665421 123455666777777777665 3222 223333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 303 MAEKIERMELESESKDKQLMELQELYN 329 (759)
Q Consensus 303 ~~~~i~~~~~~l~~~~~~l~~l~~~~~ 329 (759)
++.++..|..++..-+.++++|.....
T Consensus 306 lkqkl~dm~~erdtdr~kteeL~eEns 332 (1195)
T KOG4643|consen 306 LKQKLDDMRSERDTDRHKTEELHEENS 332 (1195)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 445555555555544555555544443
No 120
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=87.81 E-value=89 Score=39.65 Aligned_cols=12 Identities=8% Similarity=0.135 Sum_probs=5.6
Q ss_pred HHHHHHHHHHhh
Q 004356 181 LTLGRVINALVE 192 (759)
Q Consensus 181 laLg~VI~aL~~ 192 (759)
.-|+..+..++.
T Consensus 143 kElt~LFEEISg 154 (1141)
T KOG0018|consen 143 KELTALFEEISG 154 (1141)
T ss_pred HHHHHHHHHHhh
Confidence 344445555443
No 121
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=87.67 E-value=66 Score=37.95 Aligned_cols=19 Identities=21% Similarity=0.501 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004356 263 IKDLYSEIDRLKQEVYAAR 281 (759)
Q Consensus 263 i~~l~~Ei~~Lk~el~~~r 281 (759)
+.++..|+..++.++..++
T Consensus 118 l~e~~~El~~l~~~l~~l~ 136 (511)
T PF09787_consen 118 LQELDQELRRLRRQLEELQ 136 (511)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5677788888888888774
No 122
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=87.48 E-value=81 Score=38.81 Aligned_cols=75 Identities=21% Similarity=0.130 Sum_probs=40.3
Q ss_pred CceeeEEeecCCCCCChHhHHHHHHHHHHhccCcccccccccc--chHHHHHHHHHHHHHHHHHHHHHHhhCCCcCC
Q 004356 215 KTKTCIIATVSPSIHCLEETLSTLDYAHRAKNIKNKPEINQKM--MKSAMIKDLYSEIDRLKQEVYAAREKNGIYIP 289 (759)
Q Consensus 215 nskT~mIatVSP~~~~~eETlsTL~fA~rak~Ikn~p~vN~~~--~~~~li~~l~~Ei~~Lk~el~~~r~k~g~~~~ 289 (759)
++..+-|.--+|++.-...-.+++-=+....++..+-...... --...+.+++.++.....++...|.++|+..+
T Consensus 153 ~s~ii~Is~~~~dP~~Aa~iaN~la~~Y~~~~~~~k~~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~ 229 (754)
T TIGR01005 153 KTRIIAIEFRSEDPKLAAAIPDAIAAAYIAGQGAAKSESNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQSDLLMG 229 (754)
T ss_pred ccEEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence 4555556666666655555555554443333332222211100 01234556666777777777788888888764
No 123
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=87.37 E-value=82 Score=38.75 Aligned_cols=37 Identities=24% Similarity=0.372 Sum_probs=22.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 004356 603 DQKLFEFEKKFEESAANEERQLLEKVAELLASSNARKK 640 (759)
Q Consensus 603 ~~~l~~~~~~~~~~~~~~~~~l~~~i~~l~~~~~~~~~ 640 (759)
+.+++.|+- .++.++--|...++|.+.||+--.+.++
T Consensus 437 d~Q~s~fk~-Lke~aegsrrraIeQcnemv~rir~l~~ 473 (1265)
T KOG0976|consen 437 DYQLSNFKV-LKEHAEGSRRRAIEQCNEMVDRIRALMD 473 (1265)
T ss_pred HHHHhhHHH-HHHhhhhhHhhHHHHHHHHHHHHHHHhh
Confidence 445555554 3356666677777777777765544443
No 124
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=87.23 E-value=64 Score=37.36 Aligned_cols=14 Identities=21% Similarity=0.233 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHH
Q 004356 265 DLYSEIDRLKQEVY 278 (759)
Q Consensus 265 ~l~~Ei~~Lk~el~ 278 (759)
.+..+|++||.++.
T Consensus 268 ~i~~~i~~lk~~n~ 281 (622)
T COG5185 268 IINTDIANLKTQND 281 (622)
T ss_pred HHHHHHHHHHHHHH
Confidence 34455555555543
No 125
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=87.11 E-value=40 Score=34.81 Aligned_cols=19 Identities=32% Similarity=0.551 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004356 263 IKDLYSEIDRLKQEVYAAR 281 (759)
Q Consensus 263 i~~l~~Ei~~Lk~el~~~r 281 (759)
|++|..++..|..++..++
T Consensus 14 i~~L~n~l~elq~~l~~l~ 32 (194)
T PF15619_consen 14 IKELQNELAELQRKLQELR 32 (194)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555555555555554444
No 126
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=87.03 E-value=86 Score=38.61 Aligned_cols=18 Identities=33% Similarity=0.207 Sum_probs=13.7
Q ss_pred HhhhhHHHHHHHHHHHhh
Q 004356 175 EINKSLLTLGRVINALVE 192 (759)
Q Consensus 175 ~INkSLlaLg~VI~aL~~ 192 (759)
.|=+|=..+.+||..|.-
T Consensus 79 eiL~Sr~v~~~VV~~L~L 96 (754)
T TIGR01005 79 EILSSNEILKQVVDKLGL 96 (754)
T ss_pred HHHccHHHHHHHHHHcCC
Confidence 455688889999998853
No 127
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=86.99 E-value=11 Score=38.47 Aligned_cols=26 Identities=31% Similarity=0.482 Sum_probs=16.2
Q ss_pred HHHHHHHHHHhHHHHHHhhHHHHHHHHHH
Q 004356 404 DVSNLFAKIERKDKIEEGNRILIQMFQSQ 432 (759)
Q Consensus 404 ~~~~L~~ki~~k~~~~~~n~~~~~~~~~~ 432 (759)
.+..+..++. +++.+|..++..+-..
T Consensus 159 ~~~~~e~k~~---~l~~En~~Lv~Rwm~~ 184 (194)
T PF08614_consen 159 QLNMLEEKLR---KLEEENRELVERWMQR 184 (194)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 3445555554 6777888888776443
No 128
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=86.96 E-value=47 Score=35.50 Aligned_cols=61 Identities=16% Similarity=0.189 Sum_probs=34.1
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHH
Q 004356 364 RQANATIKEKDFLIANLLKSEKALVERAIELRTELENAASDVSNLFAKIERKDKIEEGNRI 424 (759)
Q Consensus 364 ~~~~~~l~e~e~~i~~l~~~e~~l~~~~~~l~~~l~~~~~~~~~L~~ki~~k~~~~~~n~~ 424 (759)
.++...+.+.+..-..|+.++-.-.--+..+...|+.+.+.+.-|..++++|..+...-+.
T Consensus 108 eql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnAfLESELdEke~llesvqR 168 (333)
T KOG1853|consen 108 EQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESELDEKEVLLESVQR 168 (333)
T ss_pred HHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3333333333333333444333333334566677777778888888888877776554444
No 129
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=86.80 E-value=39 Score=38.88 Aligned_cols=14 Identities=7% Similarity=-0.095 Sum_probs=10.5
Q ss_pred CCCCCCcccccccc
Q 004356 197 VPYRDSKLTRLLRD 210 (759)
Q Consensus 197 IPYRdSKLTrLLqd 210 (759)
-+|-.+++.|+.+.
T Consensus 209 w~~~scpvcR~~q~ 222 (493)
T KOG0804|consen 209 WWDSSCPVCRYCQS 222 (493)
T ss_pred cccCcChhhhhhcC
Confidence 45677788888876
No 130
>PRK03918 chromosome segregation protein; Provisional
Probab=86.73 E-value=94 Score=38.76 Aligned_cols=8 Identities=13% Similarity=-0.006 Sum_probs=3.6
Q ss_pred CHHHHHHH
Q 004356 94 TADEIYKI 101 (759)
Q Consensus 94 s~~e~~~l 101 (759)
|.-+++.+
T Consensus 38 til~ai~~ 45 (880)
T PRK03918 38 SILEAILV 45 (880)
T ss_pred HHHHHHHH
Confidence 34444444
No 131
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=86.65 E-value=34 Score=42.24 Aligned_cols=89 Identities=21% Similarity=0.299 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 004356 341 KLEKTEKKLEETEHALSDLEEKHRQANATIKEKDFLIANLLKSEKALVERAIELRTELENAASDVSNLFAKIERKDKIEE 420 (759)
Q Consensus 341 ~l~~~~~~l~~~~~~l~~~e~~~~~~~~~l~e~e~~i~~l~~~e~~l~~~~~~l~~~l~~~~~~~~~L~~ki~~k~~~~~ 420 (759)
+++.++..+.+.+..|..++.++..++..-...+..+.........+..+...+..++......+..|..+|+..+....
T Consensus 618 ~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele~er~~~~ 697 (769)
T PF05911_consen 618 QLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAEAEELQSKISSLEEELEKERALSE 697 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 34444444444444444444444444433333444444444445555555555666677777777777777776666555
Q ss_pred hhHHHHHHH
Q 004356 421 GNRILIQMF 429 (759)
Q Consensus 421 ~n~~~~~~~ 429 (759)
++...+..+
T Consensus 698 e~~~kc~~L 706 (769)
T PF05911_consen 698 ELEAKCREL 706 (769)
T ss_pred hhhhHHHHH
Confidence 554444443
No 132
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=86.01 E-value=46 Score=34.46 Aligned_cols=22 Identities=41% Similarity=0.591 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 004356 338 LSEKLEKTEKKLEETEHALSDL 359 (759)
Q Consensus 338 l~~~l~~~~~~l~~~~~~l~~~ 359 (759)
|.+-|...+.+..+++..|..+
T Consensus 60 L~epL~~a~~e~~eL~k~L~~y 81 (201)
T PF13851_consen 60 LSEPLKKAEEEVEELRKQLKNY 81 (201)
T ss_pred HhHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444443
No 133
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=85.99 E-value=72 Score=36.70 Aligned_cols=62 Identities=18% Similarity=0.252 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Q 004356 319 KQLMELQELYNSQLLLTAELSEKLEKTEKKLEETEHALSDLEEKHRQANATIKEKDFLIANL 380 (759)
Q Consensus 319 ~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~l~~~e~~~~~~~~~l~e~e~~i~~l 380 (759)
+++..+...+.....+...|...+..++.++..+...|.++...+......|..-+..+..+
T Consensus 45 ~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l 106 (420)
T COG4942 45 KEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNAL 106 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHH
Confidence 33333444444444444445555555555555555555555555554444444444444433
No 134
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=85.70 E-value=46 Score=34.24 Aligned_cols=19 Identities=37% Similarity=0.569 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004356 346 EKKLEETEHALSDLEEKHR 364 (759)
Q Consensus 346 ~~~l~~~~~~l~~~e~~~~ 364 (759)
.+++++++..+..+++..+
T Consensus 66 ~eEledLk~~~~~lEE~~~ 84 (193)
T PF14662_consen 66 EEELEDLKTLAKSLEEENR 84 (193)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444333
No 135
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=85.62 E-value=35 Score=32.76 Aligned_cols=57 Identities=21% Similarity=0.236 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 392 IELRTELENAASDVSNLFAKIERKDKIEEGNRILIQMFQSQLTQQLEILHKTVATSV 448 (759)
Q Consensus 392 ~~l~~~l~~~~~~~~~L~~ki~~k~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (759)
..++..+......+..|..+.+.-...-...+..|..=+..+...+..+..++.+..
T Consensus 62 ~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~ 118 (132)
T PF07926_consen 62 QQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLN 118 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666677777777777777766666666777788878888888888888888654
No 136
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=85.42 E-value=65 Score=35.68 Aligned_cols=52 Identities=23% Similarity=0.206 Sum_probs=22.5
Q ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004356 363 HRQANATIKEKDFLIANLLKSEKALVERAIELRTELENAASDVSNLFAKIER 414 (759)
Q Consensus 363 ~~~~~~~l~e~e~~i~~l~~~e~~l~~~~~~l~~~l~~~~~~~~~L~~ki~~ 414 (759)
+..++..+++....+......-..+..+...+...++........+...|..
T Consensus 206 L~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ 257 (312)
T smart00787 206 LDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAE 257 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444333333333333333333444555555555555555555543
No 137
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=85.19 E-value=58 Score=37.54 Aligned_cols=12 Identities=8% Similarity=0.379 Sum_probs=7.5
Q ss_pred cceEEEEEEEEe
Q 004356 123 SHSIFSITIHIK 134 (759)
Q Consensus 123 SH~IftI~v~~~ 134 (759)
-|.+|...|...
T Consensus 148 Chll~V~~ve~~ 159 (493)
T KOG0804|consen 148 CHLLYVDRVEVT 159 (493)
T ss_pred eeEEEEEEEEEE
Confidence 477776666544
No 138
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=85.01 E-value=25 Score=35.05 Aligned_cols=100 Identities=12% Similarity=0.154 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhhHHHHH----HHHHHHHhhhHHhhHhhHHHHHHHHHHHHHHHHH
Q 004356 453 QQLKDMEEDMQSFVSTKAEATEELRGRLGKLKAMYGSGIKAL----DGIAGELDGNSRSTFGDLNSEVSKHSHALEDLFK 528 (759)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (759)
.....|.+.+..--+.-.+.+.+++..+....+.+....-++ ..+.+.++..+...+.+...............=.
T Consensus 45 ~~~~~l~eeik~~n~~~~e~l~~~~~kl~et~~~L~k~~Pev~~qa~~l~e~lQ~~vq~l~~E~qk~~k~v~~~~~~~~e 124 (155)
T PF07464_consen 45 NVSSSLQEEIKDANPEAEEALKQLKTKLEETAEKLRKANPEVEKQANELQEKLQSAVQSLVQESQKLAKEVSENSEGANE 124 (155)
T ss_dssp HHHHHHHHHHTT-SSTHHHHHHHHHHHHHHHHHGGGG-SHHHHHT-SSSHHHHHHHHHHHHHHHHHHHHHHHS---SS-G
T ss_pred HHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 333344444444333444455566666655555555422222 2222333333222222222222222222222223
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHH
Q 004356 529 GIASEADSLLNDLQSSLYKQEEKL 552 (759)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~e~ 552 (759)
.+..-++.++++.+..+......|
T Consensus 125 ~l~~~~K~~~D~~~k~~~~~~~~l 148 (155)
T PF07464_consen 125 KLQPAIKQAYDDAVKAAQKVQKQL 148 (155)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555566665555544333
No 139
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=84.65 E-value=16 Score=37.32 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCC
Q 004356 261 AMIKDLYSEIDRLKQEVYAAREKNG 285 (759)
Q Consensus 261 ~li~~l~~Ei~~Lk~el~~~r~k~g 285 (759)
..+..+...+..|+.||..+...+|
T Consensus 67 ~~~~~le~~~~~l~~ELael~r~~~ 91 (194)
T PF08614_consen 67 AQISSLEQKLAKLQEELAELYRSKG 91 (194)
T ss_dssp -------------------------
T ss_pred ccccccccccccccccccccccccc
Confidence 4455666667777777766555444
No 140
>PLN02939 transferase, transferring glycosyl groups
Probab=84.47 E-value=1.3e+02 Score=38.32 Aligned_cols=202 Identities=18% Similarity=0.204 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhCCCcCCc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 266 LYSEIDRLKQEVYAAREKNGIYIPR--DRYLQEEAEKKAMAEKIERMELESESKDKQLMELQELYNSQLLLTAELSEKLE 343 (759)
Q Consensus 266 l~~Ei~~Lk~el~~~r~k~g~~~~~--~~~~~~e~e~~~~~~~i~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~ 343 (759)
+..++++|+.++...-...|.+..+ ..+.....+...+++.|+-+...+. .+.+..+..-...++..-|+.-+.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 274 (977)
T PLN02939 199 LEEQLEKLRNELLIRGATEGLCVHSLSKELDVLKEENMLLKDDIQFLKAELI----EVAETEERVFKLEKERSLLDASLR 274 (977)
T ss_pred hHHHHHHHhhhhhccccccccccccHHHHHHHHHHHhHHHHHHHHHHHHHHH----HHHhhhHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhH
Q 004356 344 KTEKKLEETEHALSDLEEKHRQANATIKEKDFLIANLLKSEKALVERAIELRTELENAASDVSNLFAKIERKDKIEEGNR 423 (759)
Q Consensus 344 ~~~~~l~~~~~~l~~~e~~~~~~~~~l~e~e~~i~~l~~~e~~l~~~~~~l~~~l~~~~~~~~~L~~ki~~k~~~~~~n~ 423 (759)
.++..+...+.....+.--.-.. +=++-..++.+...-..-.+++.-.....+++.+.++.|.+-++ +....
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 346 (977)
T PLN02939 275 ELESKFIVAQEDVSKLSPLQYDC---WWEKVENLQDLLDRATNQVEKAALVLDQNQDLRDKVDKLEASLK-----EANVS 346 (977)
T ss_pred HHHHHHHhhhhhhhhccchhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH-----HhhHh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHH
Q 004356 424 ILIQMFQSQLTQQLEILHKTVATSVTQQEQQLKDMEEDMQSFVSTKAEATEELRGR 479 (759)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 479 (759)
+.....-..+.++++-++.++.....+...+++.....+..|.++.....++-++.
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (977)
T PLN02939 347 KFSSYKVELLQQKLKLLEERLQASDHEIHSYIQLYQESIKEFQDTLSKLKEESKKR 402 (977)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
No 141
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=84.09 E-value=86 Score=35.98 Aligned_cols=48 Identities=10% Similarity=0.196 Sum_probs=29.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHhhhHhHHHHhhhhhhhhhhhHHhHHH
Q 004356 625 LEKVAELLASSNARKKQLVQMAVQDLRESASSRTSQLQKEMSTMQDSTFSVKAEWSA 681 (759)
Q Consensus 625 ~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~mq~~~~~~k~~~~~ 681 (759)
..--.+||.....||.- ..++. .--..+..++..|++.-...++.|-.
T Consensus 345 ~~aY~~LL~Ev~RRr~~--~~k~~-------~i~~~~~eeL~~l~eeE~~~Re~F~~ 392 (412)
T PF04108_consen 345 LSAYDSLLLEVERRRAV--RDKMK-------KIIREANEELDKLREEEQRRREAFLK 392 (412)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566677777653 33333 33466777888888877777777753
No 142
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=84.07 E-value=1.3e+02 Score=38.01 Aligned_cols=42 Identities=7% Similarity=0.118 Sum_probs=26.1
Q ss_pred HHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 004356 524 EDLFKGIASEADSLLNDLQSSLYKQEEKLTAYAQQQREAHSR 565 (759)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 565 (759)
.+++.+--...+..|++....-+..+.|+.....++.+..+.
T Consensus 392 Dkwir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~ 433 (1200)
T KOG0964|consen 392 DKWIRSEIEKLKRGINDTKEQENILQKEIEDLESELKEKLEE 433 (1200)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555666666666666777777777766665553
No 143
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=83.52 E-value=58 Score=33.57 Aligned_cols=47 Identities=19% Similarity=0.266 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 308 ERMELESESKDKQLMELQELYNSQLLLTAELSEKLEKTEKKLEETEH 354 (759)
Q Consensus 308 ~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~ 354 (759)
+.++.....+..+...++...+........|..++..++..+..++.
T Consensus 11 ~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qq 57 (193)
T PF14662_consen 11 EDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQ 57 (193)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333344433333333333344444444444444433
No 144
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=83.02 E-value=1.5e+02 Score=38.09 Aligned_cols=42 Identities=12% Similarity=0.115 Sum_probs=30.7
Q ss_pred HHHHHHHHHhhhhchHHHHHHHHHHHHhhhchhhHHHHHHHH
Q 004356 704 LEVVLQNCLKQAKMGAQQWRTAQESLLNLEKNNVAAVDSIVR 745 (759)
Q Consensus 704 m~~~lq~c~~~~~~~~~~w~~~~~~~~~l~~~~~~~~~s~~~ 745 (759)
|+.-+|.|-..-.-....|+.-++.++.+.--++++..+.+.
T Consensus 1017 ~~~K~e~~~~~l~e~~~~~~~~~k~~~~l~~~~~tE~~~~~~ 1058 (1293)
T KOG0996|consen 1017 IENKLEAINGELNEIESKIKQPEKELKKLSLCNMTETRPQIE 1058 (1293)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHhhCccccccchhhccccc
Confidence 778888898887766677777778888887777765555444
No 145
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=82.87 E-value=1.1e+02 Score=36.13 Aligned_cols=31 Identities=26% Similarity=0.214 Sum_probs=17.0
Q ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHHHHh
Q 004356 250 KPEINQKMMKSAMIKDLYSEIDRLKQEVYAARE 282 (759)
Q Consensus 250 ~p~vN~~~~~~~li~~l~~Ei~~Lk~el~~~r~ 282 (759)
.|..+++.++ ..+.+..-...|..++..+|.
T Consensus 4 ~~~~~Qd~~k--~~~Ql~~~~~~lqaev~~lr~ 34 (531)
T PF15450_consen 4 RLVPEQDTLK--RWKQLEQWVAELQAEVACLRG 34 (531)
T ss_pred CcCcccchHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 4556665433 334455555666666666654
No 146
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=82.32 E-value=65 Score=34.18 Aligned_cols=20 Identities=30% Similarity=0.343 Sum_probs=8.2
Q ss_pred HHHHHHHHHhHhHHHHHHHH
Q 004356 360 EEKHRQANATIKEKDFLIAN 379 (759)
Q Consensus 360 e~~~~~~~~~l~e~e~~i~~ 379 (759)
.+.|++.+..+...+.+|+.
T Consensus 52 ~eeLrqI~~DIn~lE~iIkq 71 (230)
T PF10146_consen 52 VEELRQINQDINTLENIIKQ 71 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444433
No 147
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=82.19 E-value=1.4e+02 Score=36.90 Aligned_cols=58 Identities=17% Similarity=0.224 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 303 MAEKIERMELESESKDKQLMELQELYNSQLLLTAELSEKLEKTEKKLEETEHALSDLE 360 (759)
Q Consensus 303 ~~~~i~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~l~~~e 360 (759)
+..+|..++.++...+..+...+...+.......++....+.++.+...++..+.+++
T Consensus 32 ~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K 89 (717)
T PF09730_consen 32 LQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYK 89 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555565555555555555555555555555555555444444444444444444
No 148
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=81.95 E-value=89 Score=34.62 Aligned_cols=14 Identities=21% Similarity=0.197 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q 004356 350 EETEHALSDLEEKH 363 (759)
Q Consensus 350 ~~~~~~l~~~e~~~ 363 (759)
..+......++.++
T Consensus 175 ~~l~~~~~~L~~e~ 188 (312)
T smart00787 175 PKLRDRKDALEEEL 188 (312)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 149
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=81.90 E-value=76 Score=33.81 Aligned_cols=18 Identities=33% Similarity=0.427 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004356 263 IKDLYSEIDRLKQEVYAA 280 (759)
Q Consensus 263 i~~l~~Ei~~Lk~el~~~ 280 (759)
+-+++.++.+++.+...+
T Consensus 22 L~~~~~~l~~~~~~~~~l 39 (302)
T PF10186_consen 22 LLELRSELQQLKEENEEL 39 (302)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455555555544333
No 150
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=80.55 E-value=83 Score=33.35 Aligned_cols=22 Identities=18% Similarity=0.345 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 004356 392 IELRTELENAASDVSNLFAKIE 413 (759)
Q Consensus 392 ~~l~~~l~~~~~~~~~L~~ki~ 413 (759)
..+...+..+..++..|+..+.
T Consensus 88 ~~~~~~l~~L~~ri~~L~~~i~ 109 (247)
T PF06705_consen 88 EQLQSRLDSLNDRIEALEEEIQ 109 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555554
No 151
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=80.29 E-value=1.4e+02 Score=35.88 Aligned_cols=28 Identities=32% Similarity=0.381 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 301 KAMAEKIERMELESESKDKQLMELQELY 328 (759)
Q Consensus 301 ~~~~~~i~~~~~~l~~~~~~l~~l~~~~ 328 (759)
.+..++|..++.-++.+...+..-.+.+
T Consensus 135 eaQgEKIrDLE~cie~kr~kLnatEEmL 162 (861)
T KOG1899|consen 135 EAQGEKIRDLETCIEEKRNKLNATEEML 162 (861)
T ss_pred HHhhhhHHHHHHHHHHHHhhhchHHHHH
Confidence 3446777777777776666555444433
No 152
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=79.19 E-value=86 Score=32.75 Aligned_cols=27 Identities=15% Similarity=0.322 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 004356 392 IELRTELENAASDVSNLFAKIERKDKI 418 (759)
Q Consensus 392 ~~l~~~l~~~~~~~~~L~~ki~~k~~~ 418 (759)
..+...|......++.||.++++...+
T Consensus 79 dq~~~dL~s~E~sfsdl~~ryek~K~v 105 (207)
T PF05010_consen 79 DQAYADLNSLEKSFSDLHKRYEKQKEV 105 (207)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 445666666667777888888766554
No 153
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=78.21 E-value=2e+02 Score=36.48 Aligned_cols=10 Identities=10% Similarity=0.441 Sum_probs=5.2
Q ss_pred CCCCCCCccc
Q 004356 196 HVPYRDSKLT 205 (759)
Q Consensus 196 hIPYRdSKLT 205 (759)
.||+-...++
T Consensus 558 ~IPvs~~~~~ 567 (1072)
T KOG0979|consen 558 RIPVSKREVE 567 (1072)
T ss_pred ccccCccccc
Confidence 3566555444
No 154
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=78.15 E-value=89 Score=33.98 Aligned_cols=31 Identities=19% Similarity=0.288 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Q 004356 350 EETEHALSDLEEKHRQANATIKEKDFLIANL 380 (759)
Q Consensus 350 ~~~~~~l~~~e~~~~~~~~~l~e~e~~i~~l 380 (759)
.+.++++.+++.....++..+.+++.=|+++
T Consensus 120 KEARkEIkQLkQvieTmrssL~ekDkGiQKY 150 (305)
T PF15290_consen 120 KEARKEIKQLKQVIETMRSSLAEKDKGIQKY 150 (305)
T ss_pred HHHHHHHHHHHHHHHHHHhhhchhhhhHHHH
Confidence 3344444444444445555555555544444
No 155
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=77.86 E-value=1.9e+02 Score=35.86 Aligned_cols=8 Identities=50% Similarity=0.845 Sum_probs=4.8
Q ss_pred cccccccC
Q 004356 206 RLLRDSLG 213 (759)
Q Consensus 206 rLLqdsLG 213 (759)
.+++|.||
T Consensus 446 ~il~D~lg 453 (717)
T PF10168_consen 446 AILSDVLG 453 (717)
T ss_pred EEecCCCC
Confidence 45677744
No 156
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.82 E-value=1.9e+02 Score=35.92 Aligned_cols=7 Identities=29% Similarity=0.548 Sum_probs=4.2
Q ss_pred CCCCCCC
Q 004356 193 HSGHVPY 199 (759)
Q Consensus 193 ~~~hIPY 199 (759)
.+++|||
T Consensus 522 ~~s~iq~ 528 (970)
T KOG0946|consen 522 ESSIIQY 528 (970)
T ss_pred cccHHHH
Confidence 3456776
No 157
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=77.33 E-value=0.75 Score=57.24 Aligned_cols=43 Identities=16% Similarity=0.197 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhchHHHHHHHHHhhhhchHHHHHHHHHHHHhhh
Q 004356 691 LEDTSAVENGKKDLEVVLQNCLKQAKMGAQQWRTAQESLLNLE 733 (759)
Q Consensus 691 ~e~~~~~~~~~~~m~~~lq~c~~~~~~~~~~w~~~~~~~~~l~ 733 (759)
.+....+..+...|..-|.+|-..-..+.+.-+.+...+.++.
T Consensus 601 ~~~~~~~e~r~~~l~~elee~~~~~~~a~r~rk~aE~el~e~~ 643 (859)
T PF01576_consen 601 REQLAVSERRLRALQAELEELREALEQAERARKQAESELDELQ 643 (859)
T ss_dssp -------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555566777777777777776666666666655544
No 158
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=77.31 E-value=2.2e+02 Score=36.41 Aligned_cols=44 Identities=16% Similarity=0.168 Sum_probs=31.8
Q ss_pred cccccCCCceeeEEeecCCCCCChHhHHHHHHHHHHhccCcccc
Q 004356 208 LRDSLGGKTKTCIIATVSPSIHCLEETLSTLDYAHRAKNIKNKP 251 (759)
Q Consensus 208 LqdsLGGnskT~mIatVSP~~~~~eETlsTL~fA~rak~Ikn~p 251 (759)
++-+.+|++-+.+|-.=.-+...|-+.|-.+.+--+|+|+--.+
T Consensus 88 F~R~I~~G~seY~IDne~VT~eeY~~eLekinIlVkARNFLVFQ 131 (1141)
T KOG0018|consen 88 FTRAINGGTSEYMIDNEIVTREEYLEELEKINILVKARNFLVFQ 131 (1141)
T ss_pred hhhhhcCCceeEEEcceeccHHHHHHHHhhcceeeeeeeEEEec
Confidence 33445566778888877777777888888888888888864433
No 159
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=76.61 E-value=1.2e+02 Score=32.97 Aligned_cols=22 Identities=14% Similarity=0.339 Sum_probs=9.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHH
Q 004356 480 LGKLKAMYGSGIKALDGIAGEL 501 (759)
Q Consensus 480 ~~~~~~~~~~~~~~i~~~~~~~ 501 (759)
+..|+..|+.-+++-+.+-.++
T Consensus 164 ~e~L~ekynkeveerkrle~e~ 185 (307)
T PF10481_consen 164 YEELQEKYNKEVEERKRLEAEV 185 (307)
T ss_pred HHHHHHHHHHHHHHHhhHHHHH
Confidence 3334444444444444444333
No 160
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=76.32 E-value=2.1e+02 Score=35.67 Aligned_cols=135 Identities=19% Similarity=0.224 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHH
Q 004356 263 IKDLYSEIDRLKQEVYAAREKNGIYIPRDRYLQEEAEKKAMAEKIERMELESESKDKQLMELQELYNSQ-----LLLTAE 337 (759)
Q Consensus 263 i~~l~~Ei~~Lk~el~~~r~k~g~~~~~~~~~~~e~e~~~~~~~i~~~~~~l~~~~~~l~~l~~~~~~~-----~~~~~~ 337 (759)
+.+-..|+..||.+|.....++..+ .+++.++...|+.-.+|+...++.-++. .....+
T Consensus 19 wekae~e~~~lk~~l~~~~~~~~~~----------------e~r~~hld~aLkec~~qlr~~ree~eq~i~~~~~~~s~e 82 (769)
T PF05911_consen 19 WEKAEAEAASLKQQLEAATQQKLAL----------------EDRVSHLDGALKECMRQLRQVREEQEQKIHEAVAKKSKE 82 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH----------------HHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHH
Confidence 4566778889999988776654322 2233333333333222322222211111 111222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 338 LSEKLEKTEKKLEETEHALSDLEEKHRQANATIKEKDFLIANLLKSEKALVERAIELRTELENAASDVSNLFAKIE 413 (759)
Q Consensus 338 l~~~l~~~~~~l~~~~~~l~~~e~~~~~~~~~l~e~e~~i~~l~~~e~~l~~~~~~l~~~l~~~~~~~~~L~~ki~ 413 (759)
++..-..++..+.++...|.....+...+...+.+++..|..+.+...........+...|+...+++..|.-++.
T Consensus 83 ~e~~~~~le~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~ 158 (769)
T PF05911_consen 83 WEKIKSELEAKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELH 158 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334555666666666666666666677777788888877776666666667777888888888777776654
No 161
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=76.17 E-value=1.4e+02 Score=33.46 Aligned_cols=20 Identities=35% Similarity=0.338 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004356 262 MIKDLYSEIDRLKQEVYAAR 281 (759)
Q Consensus 262 li~~l~~Ei~~Lk~el~~~r 281 (759)
-+..+..++.+|+.++..++
T Consensus 82 ~l~~l~~~~~~l~a~~~~l~ 101 (423)
T TIGR01843 82 DAAELESQVLRLEAEVARLR 101 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777766544
No 162
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=75.64 E-value=1.1e+02 Score=32.43 Aligned_cols=66 Identities=20% Similarity=0.251 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 335 TAELSEKLEKTEKKLEETEHALSDLEEKHRQANATIKEKDFLIANLLKSEKALVERAIELRTELEN 400 (759)
Q Consensus 335 ~~~l~~~l~~~~~~l~~~~~~l~~~e~~~~~~~~~l~e~e~~i~~l~~~e~~l~~~~~~l~~~l~~ 400 (759)
..++..++..+..+++.++.....++..+...+..+.+.+..+..+..+...+......+...|+.
T Consensus 51 ~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~ 116 (251)
T PF11932_consen 51 KQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQ 116 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444444444544444444443444444433
No 163
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=74.73 E-value=71 Score=35.34 Aligned_cols=17 Identities=12% Similarity=0.386 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004356 261 AMIKDLYSEIDRLKQEV 277 (759)
Q Consensus 261 ~li~~l~~Ei~~Lk~el 277 (759)
.++..+..+++.+..|.
T Consensus 9 ~l~~~l~~~~~~~~~E~ 25 (314)
T PF04111_consen 9 LLLEQLDKQLEQAEKER 25 (314)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555555543
No 164
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=74.59 E-value=1.4e+02 Score=32.95 Aligned_cols=13 Identities=38% Similarity=0.424 Sum_probs=8.7
Q ss_pred HhHHHHHHHHHHh
Q 004356 232 EETLSTLDYAHRA 244 (759)
Q Consensus 232 eETlsTL~fA~ra 244 (759)
+|.=.-|.+|.|+
T Consensus 72 eEkerDLelaA~i 84 (306)
T PF04849_consen 72 EEKERDLELAARI 84 (306)
T ss_pred HHHhhhHHHHHHH
Confidence 4555667777776
No 165
>PF14942 Muted: Organelle biogenesis, Muted-like protein
Probab=74.51 E-value=42 Score=33.09 Aligned_cols=106 Identities=22% Similarity=0.365 Sum_probs=62.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH----HHHHHHHHHHHHHhHHhhhHhHHHHh---------hh
Q 004356 601 VNDQKLFEFEKKFEESAANEERQLLEKVAELLASSNARK----KQLVQMAVQDLRESASSRTSQLQKEM---------ST 667 (759)
Q Consensus 601 ~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~---------s~ 667 (759)
.....+.-|.++|++..-...=..|.+++..+....+.. .......+.++.+.+...+.....=. ..
T Consensus 18 vIqgEI~~FvkEFE~KRgdRE~~~L~~~~~~~~e~~e~~lp~~~~~~~~~L~~l~~~l~~a~~~~~~l~~~e~~~~~~~~ 97 (145)
T PF14942_consen 18 VIQGEIRYFVKEFEEKRGDREVRVLENLTEMISETNEHILPRCIELMQQNLEQLLERLQAANSMCSRLQQKEQEKQKDDY 97 (145)
T ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 334456777777776655555666677766666555443 23334444555544444333332211 12
Q ss_pred hhhhhhhhHHhHHHHHH-------hhhhhhhhhhhhhhhhhchHHH
Q 004356 668 MQDSTFSVKAEWSAHMN-------KTESHYLEDTSAVENGKKDLEV 706 (759)
Q Consensus 668 mq~~~~~~k~~~~~~~~-------~~e~~~~e~~~~~~~~~~~m~~ 706 (759)
.+..-...+..|+.|+. ..+..|.+-..-..++-+.|+.
T Consensus 98 l~~~~~~~~~~we~f~~e~~~~~~~vdee~~~~~~~l~e~Y~~~~~ 143 (145)
T PF14942_consen 98 LQANREQRKQEWEEFMKEQQQKKQRVDEEFREKEERLKEQYSEMEK 143 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44456677889999998 5666677777666666666654
No 166
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=73.89 E-value=1.4e+02 Score=32.47 Aligned_cols=18 Identities=17% Similarity=0.397 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 004356 397 ELENAASDVSNLFAKIER 414 (759)
Q Consensus 397 ~l~~~~~~~~~L~~ki~~ 414 (759)
.++.+..++..+...+++
T Consensus 110 qie~Leqelkr~KsELEr 127 (307)
T PF10481_consen 110 QIEKLEQELKRCKSELER 127 (307)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 167
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=73.75 E-value=1.3e+02 Score=32.10 Aligned_cols=18 Identities=22% Similarity=0.261 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004356 263 IKDLYSEIDRLKQEVYAA 280 (759)
Q Consensus 263 i~~l~~Ei~~Lk~el~~~ 280 (759)
+..+...++.+..+|...
T Consensus 19 ~~~l~~~~e~~~~~L~~~ 36 (264)
T PF06008_consen 19 PYKLLSSIEDLTNQLRSY 36 (264)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555666666665443
No 168
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=72.63 E-value=1e+02 Score=30.31 Aligned_cols=16 Identities=31% Similarity=0.277 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 004356 310 MELESESKDKQLMELQ 325 (759)
Q Consensus 310 ~~~~l~~~~~~l~~l~ 325 (759)
++..+.+++..+...+
T Consensus 22 le~~v~~LEreLe~~q 37 (140)
T PF10473_consen 22 LEDHVESLERELEMSQ 37 (140)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 169
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=72.54 E-value=1.4e+02 Score=31.97 Aligned_cols=29 Identities=21% Similarity=0.500 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 004356 438 EILHKTVATSVTQQEQQLKDMEEDMQSFV 466 (759)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (759)
..+...+...+..|...++.+......|.
T Consensus 203 ~~~~~~i~~~~~~Q~~ll~~i~~~~~~~~ 231 (296)
T PF13949_consen 203 DPLQNRIQQNLSKQEELLQEIQEANEEFA 231 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555555555555555554
No 170
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=72.51 E-value=2.7e+02 Score=35.23 Aligned_cols=39 Identities=10% Similarity=0.076 Sum_probs=20.4
Q ss_pred cCHHHHHHHHHhchhccc--cccccccCCCCCcceEEEEEEE
Q 004356 93 TTADEIYKILEKGSAKRR--TAETLLNKQSSRSHSIFSITIH 132 (759)
Q Consensus 93 ~s~~e~~~lL~~G~~~R~--~~~T~~N~~SSRSH~IftI~v~ 132 (759)
+|.=|++.+=--|...|. ...-.+....+++ +.+.+++.
T Consensus 39 SSIldAI~~ALyG~~~~~~~~~~~~~i~~g~~~-~~V~l~F~ 79 (908)
T COG0419 39 SSILDAITFALYGKTPRLGAFSLDDLIRAGEKS-ASVELEFE 79 (908)
T ss_pred HHHHHHHHHHHcCCCCCccchhhhHHHhcCCcc-EEEEEEEE
Confidence 455566666555666553 2333344445555 55555553
No 171
>PRK11281 hypothetical protein; Provisional
Probab=72.44 E-value=3.1e+02 Score=35.78 Aligned_cols=36 Identities=11% Similarity=0.022 Sum_probs=15.5
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 004356 465 FVSTKAEATEELRGRLGKLKAMYGSGIKALDGIAGE 500 (759)
Q Consensus 465 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~ 500 (759)
++......++.+.++....++.+.......+++.++
T Consensus 293 ~L~~~t~~~~~l~~~~~~~~~~l~~~~q~~~~i~eq 328 (1113)
T PRK11281 293 RLLKATEKLNTLTQQNLRVKNWLDRLTQSERNIKEQ 328 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444444444444443
No 172
>PRK10884 SH3 domain-containing protein; Provisional
Probab=72.25 E-value=68 Score=33.41 Aligned_cols=23 Identities=13% Similarity=0.238 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 004356 259 KSAMIKDLYSEIDRLKQEVYAAR 281 (759)
Q Consensus 259 ~~~li~~l~~Ei~~Lk~el~~~r 281 (759)
....+..+..|+..|+.++...+
T Consensus 91 ~~~rlp~le~el~~l~~~l~~~~ 113 (206)
T PRK10884 91 LRTRVPDLENQVKTLTDKLNNID 113 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677777777777766544
No 173
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=71.31 E-value=2.2e+02 Score=33.72 Aligned_cols=39 Identities=8% Similarity=0.025 Sum_probs=21.0
Q ss_pred hHHHHHHHHHhhhhchHHHHHHHHHHHHhhhchhhHHHH
Q 004356 703 DLEVVLQNCLKQAKMGAQQWRTAQESLLNLEKNNVAAVD 741 (759)
Q Consensus 703 ~m~~~lq~c~~~~~~~~~~w~~~~~~~~~l~~~~~~~~~ 741 (759)
.+..-+.+-.....+.-..|.-+...+.....+-..++.
T Consensus 397 ~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKasEa~Ala 435 (522)
T PF05701_consen 397 KAKEEAEQTKAAIKTAEERLEAALKEAEAAKASEALALA 435 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555556666666666666665544444333
No 174
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=70.92 E-value=1.7e+02 Score=32.29 Aligned_cols=36 Identities=25% Similarity=0.357 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 295 QEEAEKKAMAEKIERMELESESKDKQLMELQELYNS 330 (759)
Q Consensus 295 ~~e~e~~~~~~~i~~~~~~l~~~~~~l~~l~~~~~~ 330 (759)
++.+++..+.=+++.|...++.++..+..++..|..
T Consensus 102 QLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~e 137 (302)
T PF09738_consen 102 QLDNEKSALMYQVDLLKDKLEELEETLAQLQREYRE 137 (302)
T ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555556666666666665555555555543
No 175
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=69.50 E-value=1.2e+02 Score=29.83 Aligned_cols=9 Identities=44% Similarity=0.586 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 004356 307 IERMELESE 315 (759)
Q Consensus 307 i~~~~~~l~ 315 (759)
|..++.+++
T Consensus 26 v~~LEreLe 34 (140)
T PF10473_consen 26 VESLERELE 34 (140)
T ss_pred HHHHHHHHH
Confidence 333333333
No 176
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=69.49 E-value=2.1e+02 Score=32.80 Aligned_cols=264 Identities=16% Similarity=0.178 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCcCCcchhHHHHHHHHHH-----HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-
Q 004356 261 AMIKDLYSEIDRLKQEVYAAREKNGIYIPRDRYLQEEAEKKAM-----AEKIE-RMELESESKDKQLMELQELYNSQLL- 333 (759)
Q Consensus 261 ~li~~l~~Ei~~Lk~el~~~r~k~g~~~~~~~~~~~e~e~~~~-----~~~i~-~~~~~l~~~~~~l~~l~~~~~~~~~- 333 (759)
..+..|..+.+-||.++..++-+-.+.....+-.......-++ .+=|. .+-..+....++-..+--.|+....
T Consensus 50 ~rv~slsq~Nkvlk~elet~k~kcki~qeenr~l~~Asv~IQaraeqeeEfisntLlkkiqal~keketla~~Ye~eee~ 129 (552)
T KOG2129|consen 50 ARVSSLSQRNKVLKGELETLKGKCKIMQEENRPLLLASVEIQARAEQEEEFISNTLLKKIQALFKEKETLATVYEVEEEF 129 (552)
T ss_pred HHHHHHHhhhhhhhhhHHhhhhHHHHHHhcCchhhhhhhHHhhccchHHHHHHHHHHHHHHHhhccccccchhhhhhhhh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 004356 334 LTAELSEKLEKTEKKLEETEHALSDLEEKHR-QANATIKEKDFLIANLLKSEKALVERAIELRTELENAASD-VSNLFAK 411 (759)
Q Consensus 334 ~~~~l~~~l~~~~~~l~~~~~~l~~~e~~~~-~~~~~l~e~e~~i~~l~~~e~~l~~~~~~l~~~l~~~~~~-~~~L~~k 411 (759)
..-+|..++.+++-+-..++..+...++-.. ++-.+++..+..--.-+.+-++|...+..|..+++...+. +..||.+
T Consensus 130 lTn~Lsrkl~qLr~ek~~lEq~leqeqef~vnKlm~ki~Klen~t~~kq~~leQLRre~V~lentlEQEqEalvN~LwKr 209 (552)
T KOG2129|consen 130 LTNPLSRKLKQLRHEKLPLEQLLEQEQEFFVNKLMNKIRKLENKTLLKQNTLEQLRREAVQLENTLEQEQEALVNSLWKR 209 (552)
T ss_pred ccCchhHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q ss_pred HHhHHHHHHhhHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHH
Q 004356 412 IERKDKIEEGNRILIQMFQSQ-----LTQQLEILHKTVATSVTQQEQQLKDMEEDMQSFVSTKAEATEELRGRLGKLKAM 486 (759)
Q Consensus 412 i~~k~~~~~~n~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 486 (759)
++ +++.+.+.++..+-.. +-.-+.++..--.+......-+++-+..++.-+......+-..-.+++..+.++
T Consensus 210 md---kLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~E 286 (552)
T KOG2129|consen 210 MD---KLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAE 286 (552)
T ss_pred HH---HHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhhHHHHHHHHHHHHhhhHHhh--HhhHHHHHHHHHHHHHHHH
Q 004356 487 YGSGIKALDGIAGELDGNSRST--FGDLNSEVSKHSHALEDLF 527 (759)
Q Consensus 487 ~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 527 (759)
-..+.++..++...++.-+..- |....+.-.+..+..+.-|
T Consensus 287 e~~~reen~rlQrkL~~e~erRealcr~lsEsesslemdeery 329 (552)
T KOG2129|consen 287 EVDHREENERLQRKLINELERREALCRMLSESESSLEMDEERY 329 (552)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
No 177
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=69.26 E-value=1.6e+02 Score=33.28 Aligned_cols=59 Identities=22% Similarity=0.313 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHH
Q 004356 316 SKDKQLMELQELYNSQLLLTAELSEKLEKTEKKLEETEHALSDLEEKHRQANATIKEKD 374 (759)
Q Consensus 316 ~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~l~~~e~~~~~~~~~l~e~e 374 (759)
....++..+-..|...+.+..+.+.+.......+.+....|.++.+++++.+..++++.
T Consensus 263 ~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg 321 (359)
T PF10498_consen 263 YINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERG 321 (359)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33456666666677666666667777767777777777777777777777777776654
No 178
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=69.24 E-value=1.6e+02 Score=31.36 Aligned_cols=24 Identities=25% Similarity=0.493 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 390 RAIELRTELENAASDVSNLFAKIE 413 (759)
Q Consensus 390 ~~~~l~~~l~~~~~~~~~L~~ki~ 413 (759)
.+..|...+......+..+-.++.
T Consensus 88 ~a~~L~~~i~~l~~~i~~l~~~~~ 111 (264)
T PF06008_consen 88 RAQDLEQFIQNLQDNIQELIEQVE 111 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 179
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=69.17 E-value=1.6e+02 Score=31.34 Aligned_cols=13 Identities=31% Similarity=0.429 Sum_probs=5.1
Q ss_pred HhHhHHHHHHHHH
Q 004356 368 ATIKEKDFLIANL 380 (759)
Q Consensus 368 ~~l~e~e~~i~~l 380 (759)
..+.+.+..+..+
T Consensus 82 ~e~~e~~~~i~~l 94 (246)
T PF00769_consen 82 QELREAEAEIARL 94 (246)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333444443333
No 180
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=68.40 E-value=1.1e+02 Score=29.17 Aligned_cols=35 Identities=23% Similarity=0.131 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 312 LESESKDKQLMELQELYNSQLLLTAELSEKLEKTE 346 (759)
Q Consensus 312 ~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~ 346 (759)
..+..++-++..++..+.......+.+..++-++.
T Consensus 23 s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~ 57 (120)
T PF12325_consen 23 SQLRRLEGELASLQEELARLEAERDELREEIVKLM 57 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444444444433
No 181
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=68.27 E-value=3.2e+02 Score=34.27 Aligned_cols=20 Identities=15% Similarity=0.255 Sum_probs=12.4
Q ss_pred HHHHHHHhhhHHhhHhhHHH
Q 004356 495 DGIAGELDGNSRSTFGDLNS 514 (759)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~ 514 (759)
..+.++++..+...|+.+.+
T Consensus 224 ~~i~~~l~~~~~~~L~~i~~ 243 (806)
T PF05478_consen 224 GDIQDQLGSNVYPALDSILD 243 (806)
T ss_pred HHHHHHHhhhhHHHHHHHHH
Confidence 55556666666666666665
No 182
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=67.97 E-value=1.7 Score=54.18 Aligned_cols=10 Identities=40% Similarity=0.351 Sum_probs=0.0
Q ss_pred ChHhHHHHHH
Q 004356 230 CLEETLSTLD 239 (759)
Q Consensus 230 ~~eETlsTL~ 239 (759)
..+.|+++|+
T Consensus 117 ~~e~~~~~lr 126 (859)
T PF01576_consen 117 QHEATLAELR 126 (859)
T ss_dssp ----------
T ss_pred HHHHHHHHHH
Confidence 3455565554
No 183
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=67.64 E-value=1.3e+02 Score=33.21 Aligned_cols=89 Identities=17% Similarity=0.269 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 316 SKDKQLMELQELYNSQLLLTAELSEKLEKTEKKLEETEHALSDLEEKHRQANATIKEKDFLIANLLKSEKALVERAIELR 395 (759)
Q Consensus 316 ~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~l~~~e~~~~~~~~~l~e~e~~i~~l~~~e~~l~~~~~~l~ 395 (759)
.+...+.+++++|..-+..++.|..+-..+.=++.-++..|.++++.+.+++..+.++.... ..+.
T Consensus 81 ~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~el--------------Er~K 146 (302)
T PF09738_consen 81 DLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIREL--------------ERQK 146 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHH
Confidence 34566777788888777777778777777777777788888888887777776665432221 2233
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHH
Q 004356 396 TELENAASDVSNLFAKIERKDKI 418 (759)
Q Consensus 396 ~~l~~~~~~~~~L~~ki~~k~~~ 418 (759)
.....+..+++.|...|..+..+
T Consensus 147 ~~~d~L~~e~~~Lre~L~~rdel 169 (302)
T PF09738_consen 147 RAHDSLREELDELREQLKQRDEL 169 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555566665544444
No 184
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=66.02 E-value=3.1e+02 Score=33.33 Aligned_cols=16 Identities=19% Similarity=0.333 Sum_probs=6.5
Q ss_pred EEEEEEEEEc-Cceeec
Q 004356 39 MKVTFLELYN-EEISDL 54 (759)
Q Consensus 39 V~vS~lEIYn-E~v~DL 54 (759)
+.+.-|-.|. ....|+
T Consensus 6 l~l~nf~~~~~~~~~~~ 22 (650)
T TIGR03185 6 LTLENFGPYRGRQTFDL 22 (650)
T ss_pred EEEeceEEEcCCceeee
Confidence 3333333443 334554
No 185
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=65.90 E-value=1.7e+02 Score=30.33 Aligned_cols=43 Identities=23% Similarity=0.311 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004356 327 LYNSQLLLTAELSEKLEKTEKKLEETEHALSDLEEKHRQANAT 369 (759)
Q Consensus 327 ~~~~~~~~~~~l~~~l~~~~~~l~~~~~~l~~~e~~~~~~~~~ 369 (759)
+|+.......-....|..+.+..+........+.+.++.+...
T Consensus 82 K~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~n 124 (205)
T KOG1003|consen 82 KYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSN 124 (205)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhH
Confidence 4444444444444444444444444444444444444444333
No 186
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=65.40 E-value=1.9e+02 Score=30.62 Aligned_cols=36 Identities=36% Similarity=0.485 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhH
Q 004356 337 ELSEKLEKTEKKLEETEHALSDLEEKHRQANATIKE 372 (759)
Q Consensus 337 ~l~~~l~~~~~~l~~~~~~l~~~e~~~~~~~~~l~e 372 (759)
+++.+++.+.++..++-+.+..++.++...+.+++.
T Consensus 139 e~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~ 174 (290)
T COG4026 139 ELKEKLEELQKEKEELLKELEELEAEYEEVQERLKR 174 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444445555555444444444443
No 187
>PLN03188 kinesin-12 family protein; Provisional
Probab=65.37 E-value=4.3e+02 Score=34.72 Aligned_cols=34 Identities=18% Similarity=0.292 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHH-HHHhhHHHHHH
Q 004356 395 RTELENAASDVSNLFAKIERKDK-IEEGNRILIQM 428 (759)
Q Consensus 395 ~~~l~~~~~~~~~L~~ki~~k~~-~~~~n~~~~~~ 428 (759)
..+++.+..++..|..+-++.+. +..+|+.+...
T Consensus 1154 ~~f~~alaae~s~l~~ereker~~~~~enk~l~~q 1188 (1320)
T PLN03188 1154 SKFINALAAEISALKVEREKERRYLRDENKSLQAQ 1188 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 34555666666666654333222 24555554333
No 188
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=64.75 E-value=84 Score=31.36 Aligned_cols=21 Identities=38% Similarity=0.544 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHH
Q 004356 532 SEADSLLNDLQSSLYKQEEKL 552 (759)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~e~ 552 (759)
..++.++.++...|++..++|
T Consensus 59 ~~~~e~l~~~~~kl~et~~~L 79 (155)
T PF07464_consen 59 PEAEEALKQLKTKLEETAEKL 79 (155)
T ss_dssp STHHHHHHHHHHHHHHHHHGG
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 344444555555554444443
No 189
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=64.36 E-value=1.4e+02 Score=35.74 Aligned_cols=24 Identities=29% Similarity=0.302 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhH
Q 004356 392 IELRTELENAASDVSNLFAKIERK 415 (759)
Q Consensus 392 ~~l~~~l~~~~~~~~~L~~ki~~k 415 (759)
..|...|.+....+..|..++.+.
T Consensus 484 ~~L~~~L~e~~~~ve~L~~~l~~l 507 (652)
T COG2433 484 ERLEKELEEKKKRVEELERKLAEL 507 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666533
No 190
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=64.18 E-value=4.5e+02 Score=34.59 Aligned_cols=58 Identities=21% Similarity=0.349 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHHHHHhHHhhhHhHHHHhhhhhhhhhhhHHhHHH
Q 004356 611 KKFEESAANEERQLLE-KVAELLASSNARKKQLVQMAVQDLRESASSRTSQLQKEMSTMQDSTFSVKAEWSA 681 (759)
Q Consensus 611 ~~~~~~~~~~~~~l~~-~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~mq~~~~~~k~~~~~ 681 (759)
.+|+....+-|.+++. +.+++.....++=..-++.++ .+-|-..|+.+-.-...-|..
T Consensus 1081 ~~~kd~~~nyr~~~ie~~tt~~~~~DL~ky~~aLD~Ai-------------m~fHs~KMeeiN~iI~elW~~ 1139 (1294)
T KOG0962|consen 1081 KDFKDAEKNYRKALIELKTTELSNKDLDKYYKALDKAI-------------MQFHSMKMEEINRIIRELWRK 1139 (1294)
T ss_pred hhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHh
Confidence 3444555556666655 566666665555444444333 455677899998888888863
No 191
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=63.93 E-value=3e+02 Score=32.40 Aligned_cols=14 Identities=29% Similarity=0.245 Sum_probs=7.7
Q ss_pred CCCCCCCCcccccc
Q 004356 195 GHVPYRDSKLTRLL 208 (759)
Q Consensus 195 ~hIPYRdSKLTrLL 208 (759)
..+||=++.-|.=+
T Consensus 228 ~tv~~~e~~~~l~~ 241 (508)
T KOG3091|consen 228 VTVRYAEGTSTLTL 241 (508)
T ss_pred cccccCCCcccccc
Confidence 35666666555433
No 192
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=63.93 E-value=3.2e+02 Score=32.73 Aligned_cols=18 Identities=33% Similarity=0.460 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004356 264 KDLYSEIDRLKQEVYAAR 281 (759)
Q Consensus 264 ~~l~~Ei~~Lk~el~~~r 281 (759)
+.++++|.+|........
T Consensus 21 k~~~k~i~~Le~~k~~l~ 38 (560)
T PF06160_consen 21 KRYYKEIDELEERKNELM 38 (560)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 567777877777655444
No 193
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.74 E-value=3.8e+02 Score=33.51 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHH
Q 004356 469 KAEATEELRGRLGKLKAMYGSGIKAL 494 (759)
Q Consensus 469 ~~~~~~~l~~~~~~~~~~~~~~~~~i 494 (759)
++..+.++..++..+++.+....+.+
T Consensus 804 ~~~~l~~~q~e~~~~keq~~t~~~~t 829 (970)
T KOG0946|consen 804 ESTRLQELQSELTQLKEQIQTLLERT 829 (970)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444333333
No 194
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=63.70 E-value=1.2e+02 Score=31.97 Aligned_cols=46 Identities=20% Similarity=0.247 Sum_probs=23.9
Q ss_pred CCCCCCccc-cccccccCCCceeeEEeecCCCCCChHhHHHHHHHHHHhccCcccc
Q 004356 197 VPYRDSKLT-RLLRDSLGGKTKTCIIATVSPSIHCLEETLSTLDYAHRAKNIKNKP 251 (759)
Q Consensus 197 IPYRdSKLT-rLLqdsLGGnskT~mIatVSP~~~~~eETlsTL~fA~rak~Ikn~p 251 (759)
.|+|-.+++ ..+...+++..+++|.+++. +=-|-|++-+++|.+..
T Consensus 24 p~r~~~~~~~~~~~~~~~~~~~~~i~~~~~---------villlfiDsvr~i~~~~ 70 (216)
T KOG1962|consen 24 PPRRRRKIFKDRLKSGLAPQVLKTIATTMI---------VILLLFIDSVRRIQKYV 70 (216)
T ss_pred CHHHHHHHHHHHHHHhhhhHHHHHHHHHHH---------HHHHHHHHHHHHHHHhh
Confidence 344444444 34445556666666655442 22355677777766543
No 195
>PRK10869 recombination and repair protein; Provisional
Probab=63.60 E-value=3.2e+02 Score=32.66 Aligned_cols=12 Identities=0% Similarity=0.637 Sum_probs=5.1
Q ss_pred HHHHHHHHHHhH
Q 004356 455 LKDMEEDMQSFV 466 (759)
Q Consensus 455 ~~~~~~~~~~~~ 466 (759)
++.+...+..|.
T Consensus 277 l~~~~~~l~~~~ 288 (553)
T PRK10869 277 IQEASDELRHYL 288 (553)
T ss_pred HHHHHHHHHHHH
Confidence 334444444444
No 196
>PF07794 DUF1633: Protein of unknown function (DUF1633); InterPro: IPR012436 This family contains sequences derived from a group of hypothetical proteins expressed by Arabidopsis thaliana (Mouse-ear cress). These sequences are highly similar and the region concerned is about 100 residues long.
Probab=63.09 E-value=84 Score=36.58 Aligned_cols=142 Identities=15% Similarity=0.199 Sum_probs=65.2
Q ss_pred ccccccccccCCCceeeEEeecCCCCCChHhHHHHHHHHHHhcc-CccccccccccchHHHHHHHHHH-----HHHHHHH
Q 004356 203 KLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLSTLDYAHRAKN-IKNKPEINQKMMKSAMIKDLYSE-----IDRLKQE 276 (759)
Q Consensus 203 KLTrLLqdsLGGnskT~mIatVSP~~~~~eETlsTL~fA~rak~-Ikn~p~vN~~~~~~~li~~l~~E-----i~~Lk~e 276 (759)
-|..||.-.=|-||+.-=++|..-......-+.+-|.|+.++.. ......+.++-. -....+ |++||-|
T Consensus 510 ~~~nLl~h~k~R~~qvpg~~~~a~~~~~~~~sa~EleeGk~lireltssvk~g~drE-----V~~~A~~~~~~~eRLkmE 584 (790)
T PF07794_consen 510 GLANLLRHIKGRNCQVPGVCNYAQAACYADMSAKELEEGKTLIRELTSSVKAGQDRE-----VSFQAEGIVPGIERLKME 584 (790)
T ss_pred HHHHHHHHHhcccccCCchhhHHhhhhhcccchhhhhhhHHHHHhhcccccCCccce-----eecccccccchhhhhhee
Confidence 34566666666676665444443333333445666677766533 222222222110 012233 6777777
Q ss_pred HHHHHhhCCCcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 277 VYAAREKNGIYIPRDRYLQEEAEKKAMAEKIERMELESESKDKQLMELQELYNSQLLLTAELSEKLEKTEKKLEETEHAL 356 (759)
Q Consensus 277 l~~~r~k~g~~~~~~~~~~~e~e~~~~~~~i~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~l 356 (759)
+.....-...|-... .-|+.+|.-++...+....+|..|.+..+...++..+|...-+..++...+.+.+|
T Consensus 585 lst~kDlekG~Aeki---------~~me~Ei~glq~DkQ~ar~qIh~Le~~Reelsk~V~DLtssaQgakKAVhdaK~El 655 (790)
T PF07794_consen 585 LSTSKDLEKGYAEKI---------GFMEMEIGGLQADKQTARNQIHRLEQRREELSKRVMDLTSSAQGAKKAVHDAKVEL 655 (790)
T ss_pred eccccchhhhhHhhh---------hhhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 654433221221111 11223333344444444455555555555444455555555555555555555444
Q ss_pred HH
Q 004356 357 SD 358 (759)
Q Consensus 357 ~~ 358 (759)
..
T Consensus 656 A~ 657 (790)
T PF07794_consen 656 AA 657 (790)
T ss_pred HH
Confidence 43
No 197
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=63.01 E-value=3.1e+02 Score=32.37 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhC
Q 004356 262 MIKDLYSEIDRLKQEVYAAREKN 284 (759)
Q Consensus 262 li~~l~~Ei~~Lk~el~~~r~k~ 284 (759)
+...|+..+..++.+...+|.+.
T Consensus 160 ~~EaL~ekLk~~~een~~lr~k~ 182 (596)
T KOG4360|consen 160 LLEALQEKLKPLEEENTQLRSKA 182 (596)
T ss_pred HHHHHHhhcCChHHHHHHHHHHH
Confidence 34455556666667766666654
No 198
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=62.58 E-value=1.2e+02 Score=27.53 Aligned_cols=26 Identities=23% Similarity=0.388 Sum_probs=10.6
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHH
Q 004356 362 KHRQANATIKEKDFLIANLLKSEKAL 387 (759)
Q Consensus 362 ~~~~~~~~l~e~e~~i~~l~~~e~~l 387 (759)
+.+.++..+......+..+...|..+
T Consensus 60 e~k~L~~~~~Ks~~~i~~L~~~E~~~ 85 (96)
T PF08647_consen 60 EMKKLNTQLSKSSELIEQLKETEKEF 85 (96)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 33333333333344444444444443
No 199
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=62.11 E-value=1.1e+02 Score=37.52 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhC
Q 004356 262 MIKDLYSEIDRLKQEVYAAREKN 284 (759)
Q Consensus 262 li~~l~~Ei~~Lk~el~~~r~k~ 284 (759)
.++.|..+..+|..++..+|...
T Consensus 258 ~i~~LE~en~~l~~Elk~Lr~~~ 280 (722)
T PF05557_consen 258 HIRELEKENRRLREELKHLRQSQ 280 (722)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777777766643
No 200
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=61.94 E-value=1.6e+02 Score=28.62 Aligned_cols=82 Identities=21% Similarity=0.221 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHhhHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHH
Q 004356 475 ELRGRLGKLKAMYGSGIKALDGIAGELDGNSRSTFGDLNSEVSKHSHALEDLFKGIASEADSLLNDLQSSLYKQEEKLTA 554 (759)
Q Consensus 475 ~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 554 (759)
.+..++..+.+........++.+++.+.......+..+...+.... +...-+..|...|.+-+..|..
T Consensus 37 g~~~~~~~f~~~~~~~~~~L~~vV~eh~q~Fn~sI~sy~~i~~~i~------------~sq~~i~~lK~~L~~ak~~L~~ 104 (142)
T PF04048_consen 37 GRAHRYQEFEELKKRIEKALQEVVNEHYQGFNSSIGSYSQILSSIS------------ESQERIRELKESLQEAKSLLGC 104 (142)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHhc
Confidence 3445555555555555555666666555444444444443333333 3334456677777777777777
Q ss_pred HHHHHHHHHHHHHH
Q 004356 555 YAQQQREAHSRAVE 568 (759)
Q Consensus 555 ~~~~~~~~~~~~~~ 568 (759)
-++++++.|.++.+
T Consensus 105 ~~~eL~~L~~~s~~ 118 (142)
T PF04048_consen 105 RREELKELWQRSQE 118 (142)
T ss_pred CCHHHHHHHHHHHH
Confidence 77888888888766
No 201
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=61.93 E-value=2.6e+02 Score=31.14 Aligned_cols=42 Identities=29% Similarity=0.340 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 004356 377 IANLLKSEKALVERAIELRTELENAASDVSNLFAKIERKDKI 418 (759)
Q Consensus 377 i~~l~~~e~~l~~~~~~l~~~l~~~~~~~~~L~~ki~~k~~~ 418 (759)
+....+-...|......|+..+.++..|+..|..++.+.+-.
T Consensus 74 L~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~ 115 (319)
T PF09789_consen 74 LSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVG 115 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhh
Confidence 344445566677777888888889999999998888765443
No 202
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=61.77 E-value=2.7e+02 Score=34.33 Aligned_cols=77 Identities=9% Similarity=0.135 Sum_probs=40.7
Q ss_pred CCCceeeEEeecCCCCCChHhHHHHHHHHHHhccCccccccccc--cchHHHHHHHHHHHHHHHHHHHHHHhhCCCcCC
Q 004356 213 GGKTKTCIIATVSPSIHCLEETLSTLDYAHRAKNIKNKPEINQK--MMKSAMIKDLYSEIDRLKQEVYAAREKNGIYIP 289 (759)
Q Consensus 213 GGnskT~mIatVSP~~~~~eETlsTL~fA~rak~Ikn~p~vN~~--~~~~~li~~l~~Ei~~Lk~el~~~r~k~g~~~~ 289 (759)
++++..+-|.--+|.+.-....+++|-=+.--.++..+-..... .--...+..+..++......+...|.++|+...
T Consensus 224 ~~~s~ii~Is~~~~dP~~Aa~ilN~la~~Yi~~~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~ 302 (726)
T PRK09841 224 SKESGMLELTMTGDDPQLITRILNSIANNYLQQNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDL 302 (726)
T ss_pred CCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 44555566666666666556666665433333333332211110 001233456666666666777778888887543
No 203
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=58.89 E-value=5.3e+02 Score=33.66 Aligned_cols=19 Identities=5% Similarity=0.162 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHhHHH
Q 004356 399 ENAASDVSNLFAKIERKDK 417 (759)
Q Consensus 399 ~~~~~~~~~L~~ki~~k~~ 417 (759)
+.....+..|++.+.+++.
T Consensus 218 ~~l~~~~~~Lq~~in~kR~ 236 (1109)
T PRK10929 218 QQLDAYLQALRNQLNSQRQ 236 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444443
No 204
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=58.40 E-value=3e+02 Score=30.69 Aligned_cols=13 Identities=38% Similarity=0.544 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHH
Q 004356 264 KDLYSEIDRLKQE 276 (759)
Q Consensus 264 ~~l~~Ei~~Lk~e 276 (759)
..+..++.+|+.+
T Consensus 91 ~~l~a~~~~l~~~ 103 (423)
T TIGR01843 91 LRLEAEVARLRAE 103 (423)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444443
No 205
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=58.28 E-value=4.8e+02 Score=32.93 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=16.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHH
Q 004356 258 MKSAMIKDLYSEIDRLKQEVYA 279 (759)
Q Consensus 258 ~~~~li~~l~~Ei~~Lk~el~~ 279 (759)
.....+..+..++..++.++..
T Consensus 330 ~~~~~~~~~~~e~~~~~~~l~~ 351 (980)
T KOG0980|consen 330 PRELQIEQLSREVAQLKAQLEN 351 (980)
T ss_pred hhhHHHHHHHHHHHHHhhhhhh
Confidence 3566778888888888877763
No 206
>PRK11519 tyrosine kinase; Provisional
Probab=57.12 E-value=4.4e+02 Score=32.47 Aligned_cols=74 Identities=15% Similarity=0.172 Sum_probs=39.8
Q ss_pred CceeeEEeecCCCCCChHhHHHHHHHHHHhccCccccccccc--cchHHHHHHHHHHHHHHHHHHHHHHhhCCCcC
Q 004356 215 KTKTCIIATVSPSIHCLEETLSTLDYAHRAKNIKNKPEINQK--MMKSAMIKDLYSEIDRLKQEVYAAREKNGIYI 288 (759)
Q Consensus 215 nskT~mIatVSP~~~~~eETlsTL~fA~rak~Ikn~p~vN~~--~~~~~li~~l~~Ei~~Lk~el~~~r~k~g~~~ 288 (759)
.+..+-|..-+|.+.-....+++|-=+..-.++..+-..... .--...+.+++.+++.....+...|.++|+..
T Consensus 226 ~S~ii~Is~~~~dP~~Aa~iaN~l~~~Yi~~~~~~k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~vd 301 (719)
T PRK11519 226 DTGVLSLTYTGEDREQIRDILNSITRNYLEQNIERKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSVD 301 (719)
T ss_pred CceEEEEEEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 355566666667766666666666433333333322111111 00123345666666666777777888888754
No 207
>PRK01156 chromosome segregation protein; Provisional
Probab=56.56 E-value=5e+02 Score=32.66 Aligned_cols=8 Identities=13% Similarity=0.526 Sum_probs=5.0
Q ss_pred eEEEEEEE
Q 004356 36 EYSMKVTF 43 (759)
Q Consensus 36 ~~sV~vS~ 43 (759)
.+.|.+.|
T Consensus 66 ~~~V~l~f 73 (895)
T PRK01156 66 NLEVELEF 73 (895)
T ss_pred eEEEEEEE
Confidence 55666666
No 208
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=56.55 E-value=4.1e+02 Score=31.67 Aligned_cols=10 Identities=30% Similarity=0.544 Sum_probs=4.5
Q ss_pred HHHHHHHHHH
Q 004356 473 TEELRGRLGK 482 (759)
Q Consensus 473 ~~~l~~~~~~ 482 (759)
+.++..++..
T Consensus 303 L~ele~RL~~ 312 (563)
T TIGR00634 303 LNEIEERLAQ 312 (563)
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 209
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=56.48 E-value=4.8e+02 Score=32.40 Aligned_cols=20 Identities=30% Similarity=0.689 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 004356 264 KDLYSEIDRLKQEVYAAREK 283 (759)
Q Consensus 264 ~~l~~Ei~~Lk~el~~~r~k 283 (759)
..|..+++.||.++..+++.
T Consensus 432 ~~Le~elekLk~eilKAk~s 451 (762)
T PLN03229 432 RELEGEVEKLKEQILKAKES 451 (762)
T ss_pred ccHHHHHHHHHHHHHhcccc
Confidence 46888999999999887643
No 210
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=56.37 E-value=2.2e+02 Score=28.48 Aligned_cols=96 Identities=21% Similarity=0.247 Sum_probs=52.4
Q ss_pred CCcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 285 GIYIPRDRYLQEEAEKKAMAEKIERMELESESKDKQLMELQELYNSQLLLTAELSEKLEKTEKKLEETEHALSDLEEKHR 364 (759)
Q Consensus 285 g~~~~~~~~~~~e~e~~~~~~~i~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~l~~~e~~~~ 364 (759)
|..+....|.+...+... +...++.+..++..|+..+........-+++++.....++..++..|.+.+..+.
T Consensus 36 ge~L~~iDFeqLkien~~-------l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~ 108 (177)
T PF13870_consen 36 GEGLHLIDFEQLKIENQQ-------LNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELA 108 (177)
T ss_pred cCcccHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455554444444 4444455556666677666666666666666666666666666666666666655
Q ss_pred HHHHhHhHHHHHHHHHHHHHHHH
Q 004356 365 QANATIKEKDFLIANLLKSEKAL 387 (759)
Q Consensus 365 ~~~~~l~e~e~~i~~l~~~e~~l 387 (759)
.....+..-......+......+
T Consensus 109 ~~r~~l~~~k~~r~k~~~~~~~l 131 (177)
T PF13870_consen 109 KLREELYRVKKERDKLRKQNKKL 131 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555444443333333333333
No 211
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=56.19 E-value=4.2e+02 Score=31.63 Aligned_cols=19 Identities=21% Similarity=0.289 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHhhH
Q 004356 472 ATEELRGRLGKLKAMYGSG 490 (759)
Q Consensus 472 ~~~~l~~~~~~~~~~~~~~ 490 (759)
.+.++++++..+++.+...
T Consensus 347 ~le~L~~el~~l~~~l~~~ 365 (563)
T TIGR00634 347 SLEALEEEVDKLEEELDKA 365 (563)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433
No 212
>TIGR01541 tape_meas_lam_C phage tail tape measure protein, lambda family. This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage.
Probab=55.73 E-value=3.4e+02 Score=30.42 Aligned_cols=71 Identities=13% Similarity=0.156 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHhhHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhH
Q 004356 475 ELRGRLGKLKAMYGSGIKALDGIAGELDGNSRSTFGDLNSEVSKHSHALEDLFKGIASEADSLLNDLQSSL 545 (759)
Q Consensus 475 ~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (759)
...+++..+++.+...++.++.-|..++..-...+..+.+....+.....+.+..+..-+...|+.+.+.+
T Consensus 116 ~y~~~~~~l~~~l~~~l~~~~~~y~~~d~~q~dw~~G~~~a~~~y~d~a~n~a~~~~~~~~~af~gm~dal 186 (332)
T TIGR01541 116 LYKEQLAAIKAALNEALAELHAYYAAEDALQGDWLAGARSGLADYGETATNVASAAAQLATNAFGGMASNI 186 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555666666666666777776666777777777777777777766666666666666666655
No 213
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=55.43 E-value=4.1e+02 Score=31.30 Aligned_cols=54 Identities=15% Similarity=0.233 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 004356 450 QQEQQLKDMEEDMQSFVSTKAEATEELRGRLGKLKAMYGSGIKALDGIAGELDG 503 (759)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~ 503 (759)
=..++|..+...++.......+....|+++|..|.+.-...-.+-..|...++.
T Consensus 144 Pl~e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~~~n~~i~~ea~nLt~ALkg 197 (475)
T PRK10361 144 PLREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQLNAQMAQEAINLTRALKG 197 (475)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 345556666666766777777777888888888887766666666777777765
No 214
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=55.32 E-value=63 Score=27.62 Aligned_cols=48 Identities=23% Similarity=0.376 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 304 AEKIERMELESESKDKQLMELQELYNSQLLLTAELSEKLEKTEKKLEE 351 (759)
Q Consensus 304 ~~~i~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~ 351 (759)
.+.|..++..+...+..+++|....-.++.+.+.|...+..+...+..
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 50 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRE 50 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666666665555555555555444443
No 215
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=54.64 E-value=3.8e+02 Score=30.68 Aligned_cols=16 Identities=31% Similarity=0.310 Sum_probs=13.4
Q ss_pred hhHHHHHHHHHHHhhC
Q 004356 178 KSLLTLGRVINALVEH 193 (759)
Q Consensus 178 kSLlaLg~VI~aL~~~ 193 (759)
-+.+.||.||..+.+.
T Consensus 7 ~~vlvLgGVIA~~gD~ 22 (499)
T COG4372 7 PFVLVLGGVIAYAGDT 22 (499)
T ss_pred HHHHHHHhHHHHHhhH
Confidence 4678899999999884
No 216
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=54.36 E-value=4.2e+02 Score=31.05 Aligned_cols=7 Identities=43% Similarity=0.776 Sum_probs=3.2
Q ss_pred EEEEcCc
Q 004356 44 LELYNEE 50 (759)
Q Consensus 44 lEIYnE~ 50 (759)
.|-+|++
T Consensus 100 ~Eafnde 106 (527)
T PF15066_consen 100 TEAFNDE 106 (527)
T ss_pred hhhcccc
Confidence 4444444
No 217
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=54.34 E-value=2.4e+02 Score=28.24 Aligned_cols=59 Identities=17% Similarity=0.266 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 004356 359 LEEKHRQANATIKEKDFLIANLLKSEKALVERAIELRTELENAASDVSNLFAKIERKDK 417 (759)
Q Consensus 359 ~e~~~~~~~~~l~e~e~~i~~l~~~e~~l~~~~~~l~~~l~~~~~~~~~L~~ki~~k~~ 417 (759)
++.+...+...|++++..+..+...-..-.......+..+.....+...+...|..+..
T Consensus 47 Lkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~ 105 (177)
T PF13870_consen 47 LKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREE 105 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555554444444433333334444455555555555555555554333
No 218
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=53.34 E-value=3.6e+02 Score=29.98 Aligned_cols=23 Identities=17% Similarity=0.218 Sum_probs=16.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHH
Q 004356 539 NDLQSSLYKQEEKLTAYAQQQRE 561 (759)
Q Consensus 539 ~~~~~~~~~~~~e~~~~~~~~~~ 561 (759)
+.+..++...++|+.++++|+..
T Consensus 225 e~~~shI~~Lr~EV~RLR~qL~~ 247 (310)
T PF09755_consen 225 ERLSSHIRSLRQEVSRLRQQLAA 247 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777776554
No 219
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=53.20 E-value=2.6e+02 Score=28.31 Aligned_cols=20 Identities=25% Similarity=0.335 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHhhHHHHH
Q 004356 475 ELRGRLGKLKAMYGSGIKAL 494 (759)
Q Consensus 475 ~l~~~~~~~~~~~~~~~~~i 494 (759)
+++..+..+++.+......+
T Consensus 103 el~~~l~~~~~~~~~~~~~~ 122 (204)
T PF04740_consen 103 ELKKKLNQLKEQIEDLQDEI 122 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455544444444433333
No 220
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.80 E-value=4.7e+02 Score=31.23 Aligned_cols=74 Identities=24% Similarity=0.318 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 004356 297 EAEKKAMAEKIERMELESESKDKQLMELQELYNSQLLLTAELSEKLEKTEKKLEETEHALSDLEEKHRQANATI 370 (759)
Q Consensus 297 e~e~~~~~~~i~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~l~~~e~~~~~~~~~l 370 (759)
+.+.+.+++++..+...+..+..++..+++...++..-...+..+|..++-.|+..+.+..+++.++.++....
T Consensus 337 ~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~~~ 410 (654)
T KOG4809|consen 337 RKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHNIE 410 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455566777776666666666666666655555555555666666666666766677777776666665433
No 221
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=52.42 E-value=6.2e+02 Score=32.50 Aligned_cols=13 Identities=31% Similarity=0.452 Sum_probs=7.7
Q ss_pred HhccCcccccccc
Q 004356 243 RAKNIKNKPEINQ 255 (759)
Q Consensus 243 rak~Ikn~p~vN~ 255 (759)
-||.|--.|.++.
T Consensus 633 ~AKkVaf~~~i~~ 645 (1174)
T KOG0933|consen 633 VAKKVAFDPKIRT 645 (1174)
T ss_pred HHHHhhccccccc
Confidence 3566666666554
No 222
>PRK02119 hypothetical protein; Provisional
Probab=52.20 E-value=95 Score=27.00 Aligned_cols=47 Identities=17% Similarity=0.295 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 302 AMAEKIERMELESESKDKQLMELQELYNSQLLLTAELSEKLEKTEKK 348 (759)
Q Consensus 302 ~~~~~i~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~ 348 (759)
.+.++|..++..+...+..+.+|....-.+++..+.|...+..+...
T Consensus 6 ~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~r 52 (73)
T PRK02119 6 NLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANK 52 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666776666666666666666666665555555554444433
No 223
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=51.52 E-value=6.6e+02 Score=32.51 Aligned_cols=73 Identities=15% Similarity=0.262 Sum_probs=37.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh--HHHHHHHHHHHHHHHHHHHhhHHH
Q 004356 417 KIEEGNRILIQMFQSQLTQQLEILHKTVATSVTQQEQQLKDMEEDMQSFVST--KAEATEELRGRLGKLKAMYGSGIK 492 (759)
Q Consensus 417 ~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~ 492 (759)
++..-|+.++..+-......+..+. +.+ +..|...++.--+.+.....+ .+.....+++.|.++++.+.+...
T Consensus 1245 ~LQ~iNQ~LV~~LIn~iR~slnqme--~~t-f~~q~~eiq~n~~ll~~L~~tlD~S~~a~Kqk~di~kl~~~lv~kQK 1319 (1439)
T PF12252_consen 1245 QLQKINQNLVKALINTIRVSLNQME--VKT-FEEQEKEIQQNLQLLDKLEKTLDDSDTAQKQKEDIVKLNDFLVEKQK 1319 (1439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh--hhh-hhhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhh
Confidence 4445566666665555555555554 222 223444443322233322222 344566788888888887766443
No 224
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=50.85 E-value=4.6e+02 Score=30.47 Aligned_cols=13 Identities=38% Similarity=0.335 Sum_probs=7.9
Q ss_pred hhHHHHHHHHHHH
Q 004356 178 KSLLTLGRVINAL 190 (759)
Q Consensus 178 kSLlaLg~VI~aL 190 (759)
+|-..+..||..+
T Consensus 78 ~Sr~v~~~vi~~l 90 (498)
T TIGR03007 78 LSRPNLEKVIRML 90 (498)
T ss_pred hChHHHHHHHHHc
Confidence 4555566666665
No 225
>PRK00295 hypothetical protein; Provisional
Probab=50.32 E-value=1.2e+02 Score=25.92 Aligned_cols=44 Identities=16% Similarity=0.268 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 305 EKIERMELESESKDKQLMELQELYNSQLLLTAELSEKLEKTEKK 348 (759)
Q Consensus 305 ~~i~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~ 348 (759)
+.|..++..+...+..+.+|....-.++++.+.|...+..+...
T Consensus 5 ~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~r 48 (68)
T PRK00295 5 ERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKR 48 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666666655555555554444433
No 226
>PRK04406 hypothetical protein; Provisional
Probab=49.91 E-value=1.5e+02 Score=26.06 Aligned_cols=45 Identities=18% Similarity=0.366 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 303 MAEKIERMELESESKDKQLMELQELYNSQLLLTAELSEKLEKTEK 347 (759)
Q Consensus 303 ~~~~i~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~ 347 (759)
+.++|..++..+...+..+.+|....-.++++.+.|..++..+..
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~ 53 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVG 53 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666666666555555555444433
No 227
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=49.12 E-value=5.4e+02 Score=30.82 Aligned_cols=27 Identities=15% Similarity=0.000 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 320 QLMELQELYNSQLLLTAELSEKLEKTE 346 (759)
Q Consensus 320 ~l~~l~~~~~~~~~~~~~l~~~l~~~~ 346 (759)
.+..++...++|.+..+++.++....+
T Consensus 589 H~~~l~~~k~~QlQ~l~~~~eer~~i~ 615 (741)
T KOG4460|consen 589 HVKLLCDQKKKQLQDLSYCREERKSLR 615 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555554444333
No 228
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=48.82 E-value=5.7 Score=48.54 Aligned_cols=29 Identities=10% Similarity=0.174 Sum_probs=16.2
Q ss_pred CCCeEecCcEEEEecCHHHHHHHHHhchh
Q 004356 79 KGGVFVRGLEEEIVTTADEIYKILEKGSA 107 (759)
Q Consensus 79 ~~gv~V~gL~e~~V~s~~e~~~lL~~G~~ 107 (759)
+...||..+.......-..++..|+....
T Consensus 127 ~ke~yI~~I~~Ld~~~Q~~im~~Iqev~~ 155 (713)
T PF05622_consen 127 NKEEYIQRIMELDESTQHAIMEAIQEVTS 155 (713)
T ss_dssp THHHHHHHHHHS-HHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHCCCHHHHHHHHHHHHHHhc
Confidence 34456666666566666666666655444
No 229
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.67 E-value=5e+02 Score=30.32 Aligned_cols=14 Identities=29% Similarity=0.380 Sum_probs=6.6
Q ss_pred CCCCcccccccccc
Q 004356 199 YRDSKLTRLLRDSL 212 (759)
Q Consensus 199 YRdSKLTrLLqdsL 212 (759)
||++-.+|--+..|
T Consensus 152 Fr~~ed~r~q~q~l 165 (521)
T KOG1937|consen 152 FRDIEDNRNQEQKL 165 (521)
T ss_pred cCcchhhHHHHHhh
Confidence 55554444444333
No 230
>PRK04325 hypothetical protein; Provisional
Probab=48.33 E-value=1.2e+02 Score=26.38 Aligned_cols=45 Identities=16% Similarity=0.174 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 303 MAEKIERMELESESKDKQLMELQELYNSQLLLTAELSEKLEKTEK 347 (759)
Q Consensus 303 ~~~~i~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~ 347 (759)
+.++|..++..+...+..+.+|....-.++++...|...+..+..
T Consensus 7 ~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~ 51 (74)
T PRK04325 7 MEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQ 51 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666666666665555555544444433
No 231
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=48.25 E-value=2.7e+02 Score=27.06 Aligned_cols=11 Identities=45% Similarity=0.603 Sum_probs=6.2
Q ss_pred HHhhhhHHHHH
Q 004356 174 GEINKSLLTLG 184 (759)
Q Consensus 174 ~~INkSLlaLg 184 (759)
..||..|.++|
T Consensus 5 ~yiN~~L~s~G 15 (151)
T PF11559_consen 5 EYINQQLLSRG 15 (151)
T ss_pred HHHHHHHHHCC
Confidence 45566666554
No 232
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=47.98 E-value=3.2e+02 Score=27.92 Aligned_cols=20 Identities=25% Similarity=0.416 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004356 394 LRTELENAASDVSNLFAKIE 413 (759)
Q Consensus 394 l~~~l~~~~~~~~~L~~ki~ 413 (759)
|..++..+..+...+.+++.
T Consensus 100 L~~dl~klt~~~~~l~~eL~ 119 (182)
T PF15035_consen 100 LQEDLQKLTQDWERLRDELE 119 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444443
No 233
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=47.97 E-value=3.2e+02 Score=33.71 Aligned_cols=15 Identities=27% Similarity=0.452 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHH
Q 004356 265 DLYSEIDRLKQEVYA 279 (759)
Q Consensus 265 ~l~~Ei~~Lk~el~~ 279 (759)
.+.-++..|..++..
T Consensus 309 ~lq~e~~~Le~el~s 323 (722)
T PF05557_consen 309 ELQLENEKLEDELNS 323 (722)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHHHH
Confidence 333445555555544
No 234
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=47.87 E-value=4.3e+02 Score=29.37 Aligned_cols=96 Identities=20% Similarity=0.287 Sum_probs=59.8
Q ss_pred hhhHHHHHHhhhhHHHHHH-HHHHHhhCCCCCCCCCCccccccccccCCCceeeEEeecCCCCCChHhHHHHHHHHHHhc
Q 004356 167 EGRAREAGEINKSLLTLGR-VINALVEHSGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLSTLDYAHRAK 245 (759)
Q Consensus 167 g~r~kEa~~INkSLlaLg~-VI~aL~~~~~hIPYRdSKLTrLLqdsLGGnskT~mIatVSP~~~~~eETlsTL~fA~rak 245 (759)
+-..+||..||+-|+-=|. .|+.|..+.. -.|++||.-
T Consensus 148 aF~p~eaq~Iaqailkqse~lIN~Ls~rAr---------------------------------------~dt~r~Ae~-- 186 (372)
T COG3524 148 AFDPKEAQKIAQAILKQSEKLINQLSERAR---------------------------------------RDTVRFAEE-- 186 (372)
T ss_pred ecChhhHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------------HHHHHHHHH--
Confidence 3356899999999998876 6788866421 246777764
Q ss_pred cCccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhCCCcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 246 NIKNKPEINQKMMKSAMIKDLYSEIDRLKQEVYAAREKNGIYIPRDRYLQEEAEKKAMAEKIERMELESESKDKQLMELQ 325 (759)
Q Consensus 246 ~Ikn~p~vN~~~~~~~li~~l~~Ei~~Lk~el~~~r~k~g~~~~~~~~~~~e~e~~~~~~~i~~~~~~l~~~~~~l~~l~ 325 (759)
.+....+.+.+-...|...|.+||+..|.....- ...-+..++.+|-..+.++..++
T Consensus 187 ----------------eV~~~eerv~kAs~~L~~yr~kngvfdp~~qaev-------q~~Lvs~Le~eL~~iqaqL~tvk 243 (372)
T COG3524 187 ----------------EVQKAEERVKKASNDLTDYRIKNGVFDPKAQAEV-------QMSLVSKLEDELIVIQAQLDTVK 243 (372)
T ss_pred ----------------HHHHHHHHHHHHHhHHHHHHhhcCccChhhhhHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 1234455566677888899999999877654311 11233444545544444554444
Q ss_pred H
Q 004356 326 E 326 (759)
Q Consensus 326 ~ 326 (759)
.
T Consensus 244 s 244 (372)
T COG3524 244 S 244 (372)
T ss_pred H
Confidence 3
No 235
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=47.39 E-value=6.2e+02 Score=31.06 Aligned_cols=22 Identities=18% Similarity=0.117 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhC
Q 004356 263 IKDLYSEIDRLKQEVYAAREKN 284 (759)
Q Consensus 263 i~~l~~Ei~~Lk~el~~~r~k~ 284 (759)
..+|..+|...+.++..+...-
T Consensus 63 ~~~L~~~ia~~eael~~l~s~l 84 (660)
T KOG4302|consen 63 KARLLQEIAVIEAELNDLCSAL 84 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4556667777777776655543
No 236
>PRK00106 hypothetical protein; Provisional
Probab=47.36 E-value=5.7e+02 Score=30.61 Aligned_cols=7 Identities=14% Similarity=0.382 Sum_probs=2.8
Q ss_pred hHHHHHH
Q 004356 703 DLEVVLQ 709 (759)
Q Consensus 703 ~m~~~lq 709 (759)
.|..+++
T Consensus 430 ~~a~IV~ 436 (535)
T PRK00106 430 VIAVIVA 436 (535)
T ss_pred hHHHHHH
Confidence 3444443
No 237
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=46.77 E-value=4.8e+02 Score=29.58 Aligned_cols=24 Identities=21% Similarity=0.393 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 004356 260 SAMIKDLYSEIDRLKQEVYAAREK 283 (759)
Q Consensus 260 ~~li~~l~~Ei~~Lk~el~~~r~k 283 (759)
...+.+|+.|++.|+.++...+..
T Consensus 93 ~~kl~RL~~Ev~EL~eEl~~~~~~ 116 (388)
T PF04912_consen 93 EQKLQRLRREVEELKEELEKRKAD 116 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 355678899999999999876543
No 238
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=46.61 E-value=3.7e+02 Score=32.52 Aligned_cols=41 Identities=22% Similarity=0.336 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 320 QLMELQELYNSQLLLTAELSEKLEKTEKKLEETEHALSDLE 360 (759)
Q Consensus 320 ~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~l~~~e 360 (759)
.+..+....+.+..+...|+..+..++.+++.++..|..+.
T Consensus 423 ~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~ 463 (652)
T COG2433 423 RIKKLEETVERLEEENSELKRELEELKREIEKLESELERFR 463 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444443
No 239
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=46.37 E-value=2.1e+02 Score=25.41 Aligned_cols=20 Identities=10% Similarity=0.300 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004356 393 ELRTELENAASDVSNLFAKI 412 (759)
Q Consensus 393 ~l~~~l~~~~~~~~~L~~ki 412 (759)
.++..-..-.+.+++|-.|+
T Consensus 57 qLk~E~~~WqerLr~LLGkm 76 (79)
T PRK15422 57 HLKEQQNGWQERLQALLGRM 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 33333333334444444443
No 240
>PRK02793 phi X174 lysis protein; Provisional
Probab=46.15 E-value=1.3e+02 Score=26.00 Aligned_cols=46 Identities=15% Similarity=0.225 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 303 MAEKIERMELESESKDKQLMELQELYNSQLLLTAELSEKLEKTEKK 348 (759)
Q Consensus 303 ~~~~i~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~ 348 (759)
+.++|..++..+...+..+.+|....-.++++.+.|..++..+...
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~r 51 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEK 51 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666676666666666666666666665555555554444433
No 241
>PRK00736 hypothetical protein; Provisional
Probab=46.09 E-value=1.4e+02 Score=25.57 Aligned_cols=45 Identities=18% Similarity=0.396 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 305 EKIERMELESESKDKQLMELQELYNSQLLLTAELSEKLEKTEKKL 349 (759)
Q Consensus 305 ~~i~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l 349 (759)
++|..++..+...+..+.+|....-.+++..+.|..++..+...+
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl 49 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERF 49 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446666666666666666666666666555555555444444333
No 242
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=46.05 E-value=8.2e+02 Score=32.04 Aligned_cols=19 Identities=26% Similarity=0.424 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004356 297 EAEKKAMAEKIERMELESE 315 (759)
Q Consensus 297 e~e~~~~~~~i~~~~~~l~ 315 (759)
+.+...+..++..++.++.
T Consensus 179 qae~~~l~~~~~~l~~~l~ 197 (1109)
T PRK10929 179 QAESAALKALVDELELAQL 197 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444443
No 243
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=45.87 E-value=4e+02 Score=28.34 Aligned_cols=69 Identities=13% Similarity=0.157 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHhhHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHH--HHHHhH
Q 004356 475 ELRGRLGKLKAMYGSGIKALDGIAGELDGNSRSTFGDLNSEVSKHSHALEDLFKGIASEADSLLN--DLQSSL 545 (759)
Q Consensus 475 ~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 545 (759)
.+..++.+++++..+..++++...+..+..-....-+|..++--.+ +--++.+.|+++..+|. -+++.+
T Consensus 117 ~~~~ei~k~r~e~~~ml~evK~~~E~y~k~~k~~~~gi~aml~Vf~--LF~lvmt~g~d~m~fl~v~~ly~~i 187 (230)
T PF03904_consen 117 IAQNEIKKVREENKSMLQEVKQSHEKYQKRQKSMYKGIGAMLFVFM--LFALVMTIGSDFMDFLHVDHLYKAI 187 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH--HHHHHHHhcccchhhhhHHHHHHHH
Confidence 3555566666666667777777777776666666666665554332 44456677778777765 454444
No 244
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=45.70 E-value=1.9e+02 Score=24.51 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 336 AELSEKLEKTEKKLEETEHALSDLEE 361 (759)
Q Consensus 336 ~~l~~~l~~~~~~l~~~~~~l~~~e~ 361 (759)
..+.++|.+++.....++..|.+.+.
T Consensus 14 Q~~~eEL~kvk~~n~~~e~kLqeaE~ 39 (61)
T PF08826_consen 14 QAIQEELTKVKSANLAFESKLQEAEK 39 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444333
No 245
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=45.52 E-value=6.4e+02 Score=30.68 Aligned_cols=36 Identities=28% Similarity=0.328 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 304 AEKIERMELESESKDKQLMELQELYNSQLLLTAELS 339 (759)
Q Consensus 304 ~~~i~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~l~ 339 (759)
++++.+++...+.+.=|+.-|.+..+.+-.+..+|+
T Consensus 110 QerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE 145 (861)
T KOG1899|consen 110 QERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLE 145 (861)
T ss_pred HHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHH
Confidence 455555555555555555555555554443333333
No 246
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=45.32 E-value=6e+02 Score=30.25 Aligned_cols=10 Identities=20% Similarity=0.454 Sum_probs=4.4
Q ss_pred HHHHHHHHHH
Q 004356 269 EIDRLKQEVY 278 (759)
Q Consensus 269 Ei~~Lk~el~ 278 (759)
.|.+|-.++.
T Consensus 421 RI~eLt~qlQ 430 (518)
T PF10212_consen 421 RIEELTSQLQ 430 (518)
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 247
>PRK10869 recombination and repair protein; Provisional
Probab=45.28 E-value=6.1e+02 Score=30.34 Aligned_cols=32 Identities=13% Similarity=-0.082 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 004356 472 ATEELRGRLGKLKAMYGSGIKALDGIAGELDG 503 (759)
Q Consensus 472 ~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~ 503 (759)
.+++--..+.+++.-|...++.+-..++.++.
T Consensus 300 ~ie~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~ 331 (553)
T PRK10869 300 ELEQRLSKQISLARKHHVSPEELPQHHQQLLE 331 (553)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 33333344445555555555555444444443
No 248
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=44.70 E-value=1.1e+02 Score=34.19 Aligned_cols=12 Identities=25% Similarity=0.160 Sum_probs=4.8
Q ss_pred hHHHHHHHHHHH
Q 004356 179 SLLTLGRVINAL 190 (759)
Q Consensus 179 SLlaLg~VI~aL 190 (759)
..-+|..-..+|
T Consensus 87 a~P~L~~A~~al 98 (344)
T PF12777_consen 87 AEPALEEAQEAL 98 (344)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333444444443
No 249
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=44.64 E-value=4.4e+02 Score=28.55 Aligned_cols=27 Identities=30% Similarity=0.331 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 320 QLMELQELYNSQLLLTAELSEKLEKTE 346 (759)
Q Consensus 320 ~l~~l~~~~~~~~~~~~~l~~~l~~~~ 346 (759)
.+.++......+...+..|...+..++
T Consensus 7 sl~el~~h~~~L~~~N~~L~~~IqdtE 33 (258)
T PF15397_consen 7 SLQELKKHEDFLTKLNKELIKEIQDTE 33 (258)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhHH
Confidence 344444444444444444444444444
No 250
>cd09238 V_Alix_like_1 Protein-interacting V-domain of an uncharacterized family of the V_Alix_like superfamily. This domain family is comprised of uncharacterized plant proteins. It belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), (His-Domain) type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. Alix, HD-PTP, Bro1, a
Probab=44.15 E-value=5e+02 Score=28.97 Aligned_cols=30 Identities=13% Similarity=0.320 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 004356 437 LEILHKTVATSVTQQEQQLKDMEEDMQSFV 466 (759)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (759)
.+.+...+...+..|...+..+......|.
T Consensus 249 f~~~~~~v~~~~~~Q~~ll~~i~~~n~~f~ 278 (339)
T cd09238 249 YDSVREAVSKNISSQDDLLSRLRALNEKFS 278 (339)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444455555555554444443
No 251
>PF15294 Leu_zip: Leucine zipper
Probab=43.99 E-value=4.7e+02 Score=28.66 Aligned_cols=45 Identities=22% Similarity=0.359 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 303 MAEKIERMELESESKDKQLMELQELYNSQLLLTAELSEKLEKTEK 347 (759)
Q Consensus 303 ~~~~i~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~ 347 (759)
+...|.++..+.+.+..++..++........+...+...|..++.
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666666666555555555555555554
No 252
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=43.99 E-value=2.6e+02 Score=31.30 Aligned_cols=58 Identities=16% Similarity=0.273 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh----hHHHHHHHHHHHHHHHHHHHhhHH
Q 004356 434 TQQLEILHKTVATSVTQQEQQLKDMEEDMQSFVS----TKAEATEELRGRLGKLKAMYGSGI 491 (759)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~~ 491 (759)
.+.+.++++.+...+..|...++.+...++..-. ...+.++++++.+...+..+.+..
T Consensus 27 leel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik~r~~~l~DmE 88 (330)
T PF07851_consen 27 LEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKSLSAEERELIEKLEEDIKERRCQLFDME 88 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3445566667777777778888888877777733 234455666666666555554443
No 253
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=43.61 E-value=3.5e+02 Score=27.13 Aligned_cols=44 Identities=23% Similarity=0.343 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhH
Q 004356 329 NSQLLLTAELSEKLEKTEKKLEETEHALSDLEEKHRQANATIKE 372 (759)
Q Consensus 329 ~~~~~~~~~l~~~l~~~~~~l~~~~~~l~~~e~~~~~~~~~l~e 372 (759)
+.-..+...+..+|..++..+..+-.....++...+.+..++.+
T Consensus 23 E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~e 66 (159)
T PF05384_consen 23 EQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAE 66 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455566667777777777777777777777766666655
No 254
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=43.29 E-value=5.4e+02 Score=29.17 Aligned_cols=33 Identities=12% Similarity=0.167 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHH
Q 004356 392 IELRTELENAASDVSNLFAKIERKDKIEEGNRI 424 (759)
Q Consensus 392 ~~l~~~l~~~~~~~~~L~~ki~~k~~~~~~n~~ 424 (759)
..+...|..+.+++.....+++++..--+.+.-
T Consensus 297 ~~~t~~L~~IseeLe~vK~emeerg~~mtD~sP 329 (359)
T PF10498_consen 297 SERTRELAEISEELEQVKQEMEERGSSMTDGSP 329 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCH
Confidence 344555666666666666666666554444444
No 255
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=43.19 E-value=6.2e+02 Score=29.87 Aligned_cols=15 Identities=27% Similarity=0.279 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 004356 384 EKALVERAIELRTEL 398 (759)
Q Consensus 384 e~~l~~~~~~l~~~l 398 (759)
|+.|..+...|...+
T Consensus 413 EE~Lr~Kldtll~~l 427 (508)
T KOG3091|consen 413 EEELRAKLDTLLAQL 427 (508)
T ss_pred HHHHHHHHHHHHHHh
Confidence 333333334444333
No 256
>COG1322 Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]
Probab=42.63 E-value=6.2e+02 Score=29.65 Aligned_cols=125 Identities=14% Similarity=0.220 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhhHHHHHHhHH-HHHHHH
Q 004356 520 SHALEDLFKGIASEADSLLNDLQSSLYKQEEKLTAYAQQQREAHSRAVENARSVSKVTVNFFKTLDMHASNLT-KIVEEA 598 (759)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~ 598 (759)
+..+..++.........+...+.......+......+.|+....+........+....+.-|......+..+. +.++.-
T Consensus 54 ~~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~eq~~~l~~~~~ql~~~~~~~~~~i~e~~~~~~~el~~~~~~~L 133 (448)
T COG1322 54 AEQLRTFARSLQALNLELIQELNELKARLQQQLLQSREQLQLLIESLAQLSSEFQELANEIFEELNRRLAELNQQNLKQL 133 (448)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q ss_pred HHhhhhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 004356 599 QTVNDQKLFEFEKKFEE---SAANEERQLLEKVAELLASSNARKKQLVQ 644 (759)
Q Consensus 599 ~~~~~~~l~~~~~~~~~---~~~~~~~~l~~~i~~l~~~~~~~~~~~~~ 644 (759)
.......+..|++..+. .++.++..++++|..++.....-......
T Consensus 134 l~~~~~~~e~f~e~l~~~~~~s~~~~~~~~~~i~~~lg~~~~la~e~~~ 182 (448)
T COG1322 134 LKPLREVLEKFREQLEQRIHESAEERSTLLEEIDRLLGEIQQLAQEAGN 182 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 257
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=42.24 E-value=5.2e+02 Score=28.63 Aligned_cols=73 Identities=16% Similarity=0.125 Sum_probs=31.4
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHh-HHHHHHhhHHHHHHHHHHHHH
Q 004356 360 EEKHRQANATIKEKDFLIANLLKSEKALVERAIELRTELENAASDVS-NLFAKIER-KDKIEEGNRILIQMFQSQLTQ 435 (759)
Q Consensus 360 e~~~~~~~~~l~e~e~~i~~l~~~e~~l~~~~~~l~~~l~~~~~~~~-~L~~ki~~-k~~~~~~n~~~~~~~~~~~~~ 435 (759)
+-..+.++..|.+-...+..+ |.......--|-.+.-.+..+.. .+..++.. |.-....-+..|.+|+.++.+
T Consensus 74 ~~~c~EL~~~I~egr~~~~~~---E~~~~~~nPpLf~EY~~a~~d~r~~m~~q~~~vK~~aRl~aK~~WYeWR~~ll~ 148 (325)
T PF08317_consen 74 QFSCRELKKYISEGRQIFEEI---EEETYESNPPLFREYYTADPDMRLLMDNQFQLVKTYARLEAKKMWYEWRMQLLE 148 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHhhcCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555544443333 33332322233333333333332 22233332 233345556788888755543
No 258
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.78 E-value=6.9e+02 Score=29.95 Aligned_cols=42 Identities=17% Similarity=0.169 Sum_probs=24.5
Q ss_pred EEecCHHHHHHHHHhchhccccccccccCCCCCcceEEEEEEEE
Q 004356 90 EIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHI 133 (759)
Q Consensus 90 ~~V~s~~e~~~lL~~G~~~R~~~~T~~N~~SSRSH~IftI~v~~ 133 (759)
-.+.+...-...+.+...++.+.-..++ +-+||++|.|...+
T Consensus 120 s~i~dlQ~q~k~lqrE~~nlkvelelke--ekLsssMnsIKTFw 161 (654)
T KOG4809|consen 120 SLLADLQRQAKLLQREEHNLKVELELKE--EKLSSSMNSIKTFW 161 (654)
T ss_pred hhhhhhHHHHHHHHHHhhhhhHHHHHHH--HHhcCccccccccc
Confidence 3445555555566666666665543332 34678888877643
No 259
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=41.68 E-value=7.2e+02 Score=31.11 Aligned_cols=7 Identities=14% Similarity=0.283 Sum_probs=3.8
Q ss_pred CCCCCCC
Q 004356 195 GHVPYRD 201 (759)
Q Consensus 195 ~hIPYRd 201 (759)
.+||...
T Consensus 353 ~~Vpa~~ 359 (771)
T TIGR01069 353 IPIPANE 359 (771)
T ss_pred CCccCCc
Confidence 3666554
No 260
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=41.00 E-value=1e+03 Score=31.79 Aligned_cols=290 Identities=11% Similarity=0.040 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCcCCcchhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 263 IKDLYSEIDRLKQEVYAAREKNGIYIPRDRYLQEEAEKKAM--AEKIERMELESESKDKQLMELQELYNSQLLLTAELSE 340 (759)
Q Consensus 263 i~~l~~Ei~~Lk~el~~~r~k~g~~~~~~~~~~~e~e~~~~--~~~i~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~l~~ 340 (759)
+.+++.+++.|+..+.++..=.+.|-.-..+.....-..-+ ...++.+...+......+...+..+.........++.
T Consensus 232 ~~~~~~~le~l~~~~~~l~~i~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~ 311 (1353)
T TIGR02680 232 LDEYRDELERLEALERALRNFLQRYRRYARTMLRRRATRLRSAQTQYDQLSRDLGRARDELETAREEERELDARTEALER 311 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 341 KLEKTEKKLEETE--------HALSDLEEKHRQANATIKEKDFLIANLLKSEKALVERAIELRTELENAASDVSNLFAKI 412 (759)
Q Consensus 341 ~l~~~~~~l~~~~--------~~l~~~e~~~~~~~~~l~e~e~~i~~l~~~e~~l~~~~~~l~~~l~~~~~~~~~L~~ki 412 (759)
++..++.++..++ ..+.+++..++.....+..+...+.........+..........+......+......+
T Consensus 312 ~~~~l~~~~~~l~~~~a~~~~~eL~el~~ql~~~~~~a~~~~~~~~~a~~~~e~~~~~~~~~~~r~~~~~~~l~~~~~el 391 (1353)
T TIGR02680 312 EADALRTRLEALQGSPAYQDAEELERARADAEALQAAAADARQAIREAESRLEEERRRLDEEAGRLDDAERELRAAREQL 391 (1353)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhHHHH-----HHhhHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHH
Q 004356 413 ERKDKI-----EEGNRILI-------------QMFQSQLTQQLEILHKTVATSVTQQEQQLKDMEEDMQSFVSTKAEATE 474 (759)
Q Consensus 413 ~~k~~~-----~~~n~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (759)
..-..- .......+ ...+..+......+...+.... .+.........-...-.....
T Consensus 392 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~~~~~~~~i~~L~-----~~~~~~e~a~~~~~~~~~~~~ 466 (1353)
T TIGR02680 392 ARAAERAGLSPAHTAEPDAALAAQELQELGALDARRQDADRVIAQRSEQVALLR-----RRDDVADRAEATHAAARARRD 466 (1353)
T ss_pred HHHHHhcCCCccccccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhh-------------------------------hHHhhHhhHHHHHHHHHHHH
Q 004356 475 ELRGRLGKLKAMYGSGIKALDGIAGELDG-------------------------------NSRSTFGDLNSEVSKHSHAL 523 (759)
Q Consensus 475 ~l~~~~~~~~~~~~~~~~~i~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 523 (759)
++......+...... .+.-..+.+.+-. ......+.+...+..++..+
T Consensus 467 el~~~~~~~~e~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 545 (1353)
T TIGR02680 467 ELDEEAEQAAARAEL-ADEAVHREGARLAWVDAWQAQLRELTILAVDDQPGALADLDSWDALLQGEAPVRVAVYSAVQPL 545 (1353)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhHHhhhccchhhhhcchhhhhhhhcchhhhhccchHHHHHHHHHHHHH
Q ss_pred HHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 004356 524 EDLFKGIASEADSLLNDLQSSLYKQEEKLTAYAQQ 558 (759)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 558 (759)
..-+.......+...+.+.....+.+.+.+...++
T Consensus 546 ~~~l~~~~~~l~~~~~~l~e~~~el~~e~~~~e~~ 580 (1353)
T TIGR02680 546 ADELTRERAALRLAEEVLEEERDALRTERERLEQG 580 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC
No 261
>PF15294 Leu_zip: Leucine zipper
Probab=40.87 E-value=5.2e+02 Score=28.31 Aligned_cols=23 Identities=9% Similarity=0.173 Sum_probs=13.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHH
Q 004356 479 RLGKLKAMYGSGIKALDGIAGEL 501 (759)
Q Consensus 479 ~~~~~~~~~~~~~~~i~~~~~~~ 501 (759)
.+.+|++.+..--+.|+.++..+
T Consensus 254 ay~NMk~~ltkKn~QiKeLRkrl 276 (278)
T PF15294_consen 254 AYRNMKEILTKKNEQIKELRKRL 276 (278)
T ss_pred HHHHhHHHHHhccHHHHHHHHHh
Confidence 45566666666666666665544
No 262
>PF14992 TMCO5: TMCO5 family
Probab=40.57 E-value=5.3e+02 Score=28.29 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHH
Q 004356 392 IELRTELENAASDVSNLFAKIERKDK 417 (759)
Q Consensus 392 ~~l~~~l~~~~~~~~~L~~ki~~k~~ 417 (759)
..|....+.....|..|+.|++++..
T Consensus 73 ~~LE~~ne~l~~~~~elq~k~~e~~~ 98 (280)
T PF14992_consen 73 AKLEKENEHLSKSVQELQRKQDEQET 98 (280)
T ss_pred HHHhhhhHhhhhhhhhhhhhhccccC
Confidence 34444455555666777777765443
No 263
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=40.39 E-value=7.3e+02 Score=29.87 Aligned_cols=35 Identities=17% Similarity=0.381 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHH
Q 004356 401 AASDVSNLFAKIERKDKIEEGNRILIQMFQSQLTQ 435 (759)
Q Consensus 401 ~~~~~~~L~~ki~~k~~~~~~n~~~~~~~~~~~~~ 435 (759)
..+.+..|+..++.+......+..+...++.++.+
T Consensus 419 ~~e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~~~ 453 (607)
T KOG0240|consen 419 LTERIESLYQQLDQKDDQINKQSQLMEKLKEQLLD 453 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666665555444444444444444333
No 264
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=40.33 E-value=6.5e+02 Score=29.25 Aligned_cols=17 Identities=24% Similarity=0.434 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhh
Q 004356 267 YSEIDRLKQEVYAAREK 283 (759)
Q Consensus 267 ~~Ei~~Lk~el~~~r~k 283 (759)
..|+..|+.+|..+|+-
T Consensus 150 ~~Ev~~LRreLavLRQl 166 (424)
T PF03915_consen 150 LKEVQSLRRELAVLRQL 166 (424)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 67888888888888864
No 265
>PRK00846 hypothetical protein; Provisional
Probab=39.12 E-value=2.2e+02 Score=25.21 Aligned_cols=44 Identities=18% Similarity=0.215 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 303 MAEKIERMELESESKDKQLMELQELYNSQLLLTAELSEKLEKTE 346 (759)
Q Consensus 303 ~~~~i~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~ 346 (759)
+..+|..++..+...+..+.+|....-.++...+.+...+..+.
T Consensus 11 le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~ 54 (77)
T PRK00846 11 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLL 54 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666655555555555555554444444444443333
No 266
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=39.01 E-value=6e+02 Score=28.43 Aligned_cols=24 Identities=21% Similarity=0.353 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 339 SEKLEKTEKKLEETEHALSDLEEK 362 (759)
Q Consensus 339 ~~~l~~~~~~l~~~~~~l~~~e~~ 362 (759)
++....+..++..++..+.+++++
T Consensus 78 re~Nk~L~~Ev~~Lrqkl~E~qGD 101 (319)
T PF09789_consen 78 REQNKKLKEEVEELRQKLNEAQGD 101 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhch
Confidence 333344444444444444444444
No 267
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=38.94 E-value=7.4e+02 Score=29.49 Aligned_cols=48 Identities=10% Similarity=0.231 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHhHhhHHHHHH----HHHHHHHHHHHHHhhHHHHHH
Q 004356 448 VTQQEQQLKDMEEDMQSFVSTKAEATE----ELRGRLGKLKAMYGSGIKALD 495 (759)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~~~~~~i~ 495 (759)
+.+...+++.-...++..+..+.++.. -+...+..+..+++..++.+.
T Consensus 274 V~~Ltk~v~~~q~sL~kvl~aE~kaR~~k~~~e~sk~eeL~~~L~~~lea~q 325 (531)
T PF15450_consen 274 VAQLTKFVQQNQKSLNKVLNAEQKARDAKEKLEESKAEELATKLQENLEAMQ 325 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHhhHHHHHHHHHHHHHHHH
Confidence 334445555444445545544444321 344455566666666666553
No 268
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=38.62 E-value=4.9e+02 Score=27.51 Aligned_cols=16 Identities=31% Similarity=0.223 Sum_probs=7.7
Q ss_pred HhhhhHHHHHHHHHHH
Q 004356 175 EINKSLLTLGRVINAL 190 (759)
Q Consensus 175 ~INkSLlaLg~VI~aL 190 (759)
.++.-+.+++-||--|
T Consensus 43 ~~~~~i~~~~~villl 58 (216)
T KOG1962|consen 43 QVLKTIATTMIVILLL 58 (216)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455555555544333
No 269
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=38.59 E-value=4.5e+02 Score=26.92 Aligned_cols=45 Identities=16% Similarity=0.055 Sum_probs=19.9
Q ss_pred HhhHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHH
Q 004356 506 RSTFGDLNSEVSKHSHALEDLFKGIASEADSLLNDLQSSLYKQEE 550 (759)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (759)
...|+.+...++..+..+..........+-.-+.+...-+...+.
T Consensus 69 ~~~L~~~~~~~~~~~~~~~~l~~~~~~~f~e~Lkey~~y~~svk~ 113 (200)
T cd07624 69 APLLEGVSSAVERCTAALEVLLSDHEFVFLPPLREYLLYSDAVKD 113 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 444555555555555544444443433333344444433333443
No 270
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=38.49 E-value=3.1e+02 Score=24.97 Aligned_cols=16 Identities=13% Similarity=0.505 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 004356 296 EEAEKKAMAEKIERME 311 (759)
Q Consensus 296 ~e~e~~~~~~~i~~~~ 311 (759)
...+.+.+..+++.+.
T Consensus 34 ld~~~r~l~~~~e~lr 49 (108)
T PF02403_consen 34 LDQERRELQQELEELR 49 (108)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333334444433
No 271
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=38.45 E-value=7e+02 Score=29.04 Aligned_cols=39 Identities=5% Similarity=0.033 Sum_probs=26.7
Q ss_pred HHHHhHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 004356 461 DMQSFVSTKAEATEELRGRLGKLKAMYGSGIKALDGIAG 499 (759)
Q Consensus 461 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~ 499 (759)
.+..|+..+..++.++--.|-.+|..+...-.+++...+
T Consensus 380 v~gtl~vahgsslDdVD~kIleak~al~evtt~lrErl~ 418 (575)
T KOG4403|consen 380 VFGTLHVAHGSSLDDVDHKILEAKSALSEVTTLLRERLH 418 (575)
T ss_pred hheeeeeccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777888888888888777776655554443
No 272
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=37.77 E-value=5.3e+02 Score=27.44 Aligned_cols=51 Identities=25% Similarity=0.293 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004356 319 KQLMELQELYNSQLLLTAELSEKLEKTEKKLEETEHALSDLEEKHRQANAT 369 (759)
Q Consensus 319 ~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~l~~~e~~~~~~~~~ 369 (759)
....+++.+++..+.++.+|.+++..++.++++.+..|..++.++.++...
T Consensus 135 e~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~ 185 (290)
T COG4026 135 EDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEM 185 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666666666666666666666666666666555554443
No 273
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=37.69 E-value=6.6e+02 Score=28.57 Aligned_cols=15 Identities=20% Similarity=0.113 Sum_probs=10.3
Q ss_pred hhhHHHHHHHHHHHh
Q 004356 177 NKSLLTLGRVINALV 191 (759)
Q Consensus 177 NkSLlaLg~VI~aL~ 191 (759)
=+|-..+.+||..|.
T Consensus 76 l~S~~v~~~Vi~~l~ 90 (444)
T TIGR03017 76 INSDRVAKKVVDKLK 90 (444)
T ss_pred HHHHHHHHHHHHHcC
Confidence 346667777887764
No 274
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=37.52 E-value=5.2e+02 Score=27.33 Aligned_cols=13 Identities=23% Similarity=0.279 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q 004356 305 EKIERMELESESK 317 (759)
Q Consensus 305 ~~i~~~~~~l~~~ 317 (759)
.++..++.+++.+
T Consensus 56 ~e~~~l~~e~e~L 68 (251)
T PF11932_consen 56 AEYRQLEREIENL 68 (251)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 275
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=37.47 E-value=5.1e+02 Score=27.21 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 004356 261 AMIKDLYSEIDRLKQEVYAAREK 283 (759)
Q Consensus 261 ~li~~l~~Ei~~Lk~el~~~r~k 283 (759)
..|..+-.++..++.++..++..
T Consensus 45 ~~i~~aP~~~~~l~~~l~~l~~~ 67 (240)
T PF12795_consen 45 KQIDQAPKEIRELQKELEALKSQ 67 (240)
T ss_pred HHHHHhHHHHHHHHHHHHhhhcc
Confidence 34555556666667666665443
No 276
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=36.37 E-value=7.5e+02 Score=28.80 Aligned_cols=19 Identities=42% Similarity=0.363 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 004356 371 KEKDFLIANLLKSEKALVE 389 (759)
Q Consensus 371 ~e~e~~i~~l~~~e~~l~~ 389 (759)
+|.+.++.++.++|..|..
T Consensus 309 kelE~lR~~L~kAEkele~ 327 (575)
T KOG4403|consen 309 KELEQLRVALEKAEKELEA 327 (575)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3556666666666666644
No 277
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=36.03 E-value=4.7e+02 Score=26.38 Aligned_cols=19 Identities=21% Similarity=0.597 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHhHhh
Q 004356 450 QQEQQLKDMEEDMQSFVST 468 (759)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~ 468 (759)
++..++..+...+..|...
T Consensus 21 ~~~~~l~~l~~ai~~~~~~ 39 (204)
T PF04740_consen 21 ELKEQLESLQKAINQFISS 39 (204)
T ss_pred HHHHHHHHHHHHHHHHHcC
Confidence 3444555555555555544
No 278
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=35.68 E-value=5.8e+02 Score=27.28 Aligned_cols=20 Identities=5% Similarity=0.365 Sum_probs=9.2
Q ss_pred HHhHHHHHHhhHHHHHHHHH
Q 004356 412 IERKDKIEEGNRILIQMFQS 431 (759)
Q Consensus 412 i~~k~~~~~~n~~~~~~~~~ 431 (759)
+.+-..+..+...++..++.
T Consensus 150 l~~l~~l~~eR~~~~~~lk~ 169 (296)
T PF13949_consen 150 LNKLEELKKEREELLEQLKE 169 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333444455555555443
No 279
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=35.41 E-value=7.8e+02 Score=28.76 Aligned_cols=172 Identities=18% Similarity=0.218 Sum_probs=84.3
Q ss_pred HhhHHHHHHHHHHHHhhhHHhhHhhHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 004356 487 YGSGIKALDGIAGELDGNSRSTFGDLNSEVSKHS-HALEDLFKGIASEADSLLNDLQSSLYKQEEKLTAYAQQQREAHSR 565 (759)
Q Consensus 487 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 565 (759)
+...+..|+.+++.+...+...++.+...+...- ..-+..-.-+...+..++..++......=+.|..+-.++...+.
T Consensus 262 ~~~~~~~lr~~~E~~~~ec~~~ve~~k~~L~~~~~~~~eea~~lv~~~~~plv~~~q~~~e~~le~l~~~~E~~a~~~~- 340 (473)
T PF14643_consen 262 HQQCMEKLRALYEKICQECLALVEKLKQELLDWKACTEEEAEELVNPEFLPLVGELQSEFEEELEKLDKSFEELAKQTE- 340 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3345566677777777777666666665544422 11122222233344444444444444433333333333333333
Q ss_pred HHHHHHHHhHHHHHhHhhHHHHHHhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 004356 566 AVENARSVSKVTVNFFKTLDMHASNLTKIVEEAQTVNDQKLFEFEKKFEESAANEERQLLEKVAELLASSNARKKQLVQM 645 (759)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~ 645 (759)
........||..+..--.. +...+..+...+ ..-|.+...-.....+.++.-|..
T Consensus 341 ------~~~~~L~~f~~~~~~lwd~-----------h~~~l~~~e~~l--------~~~l~~~r~~~~~~~q~~E~~Ld~ 395 (473)
T PF14643_consen 341 ------AQSEDLFKFFQEAAQLWDE-----------HRKKLSKQEEEL--------EKRLEQCREKHDQENQEKEAKLDI 395 (473)
T ss_pred ------HHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH--------HHHHHHHHHHhHHHHHHHHHHHHH
Confidence 2222333344333222211 122222222222 333445555555566667777777
Q ss_pred HHHHHHHhHHhhhHhHHHHhhhhhhhhhhhHHhHHHHHHhh
Q 004356 646 AVQDLRESASSRTSQLQKEMSTMQDSTFSVKAEWSAHMNKT 686 (759)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~s~mq~~~~~~k~~~~~~~~~~ 686 (759)
.+..||.... ...|+..+...-++=..++.....|-...
T Consensus 396 ~~d~lRq~s~--ee~L~~~l~~~~~~Ld~Ie~~Y~~fh~~~ 434 (473)
T PF14643_consen 396 ALDRLRQASS--EEKLKEHLEKALDLLDQIEEEYEDFHKKQ 434 (473)
T ss_pred HHHHHHhCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777775443 55677777776666666676666664433
No 280
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=34.68 E-value=7.9e+02 Score=28.56 Aligned_cols=33 Identities=12% Similarity=0.171 Sum_probs=23.3
Q ss_pred HhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 004356 528 KGIASEADSLLNDLQSSLYKQEEKLTAYAQQQR 560 (759)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 560 (759)
..++..+.-+++++++.|..++.+.-..++..+
T Consensus 325 ~~~e~~~lk~~e~~~kqL~~~~kek~~~~Qd~~ 357 (446)
T KOG4438|consen 325 NQLELEKLKMFENLTKQLNELKKEKESRRQDLE 357 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677889999999998877655555333
No 281
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=34.49 E-value=6.1e+02 Score=27.20 Aligned_cols=26 Identities=8% Similarity=0.047 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004356 440 LHKTVATSVTQQEQQLKDMEEDMQSF 465 (759)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (759)
+...+.++...+-+..+.+...++.|
T Consensus 212 ~k~~l~~~Ad~~i~fy~~~~~~We~~ 237 (240)
T cd07667 212 FRQLLMGMADKNIQYYEKCLTAWESI 237 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444443
No 282
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=34.45 E-value=4e+02 Score=25.10 Aligned_cols=30 Identities=10% Similarity=0.213 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 332 LLLTAELSEKLEKTEKKLEETEHALSDLEE 361 (759)
Q Consensus 332 ~~~~~~l~~~l~~~~~~l~~~~~~l~~~e~ 361 (759)
..+.+.|+..+..++.........+.+++.
T Consensus 36 ~kqkd~L~~~l~~L~~q~~s~~qr~~eLqa 65 (107)
T PF09304_consen 36 AKQKDQLRNALQSLQAQNASRNQRIAELQA 65 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444433333333333333
No 283
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=34.39 E-value=2.5e+02 Score=26.28 Aligned_cols=37 Identities=19% Similarity=0.263 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 303 MAEKIERMELESESKDKQLMELQELYNSQLLLTAELS 339 (759)
Q Consensus 303 ~~~~i~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~l~ 339 (759)
+-+.+..++..+..+-.++..|+..+.....+...|+
T Consensus 6 l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~ 42 (107)
T PF06156_consen 6 LFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLR 42 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455554444444444444444444333333333
No 284
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=34.03 E-value=1.7e+02 Score=32.73 Aligned_cols=6 Identities=33% Similarity=0.412 Sum_probs=2.2
Q ss_pred HHHHHH
Q 004356 405 VSNLFA 410 (759)
Q Consensus 405 ~~~L~~ 410 (759)
+++|..
T Consensus 286 i~~L~~ 291 (344)
T PF12777_consen 286 ISGLSG 291 (344)
T ss_dssp HHCCHH
T ss_pred Hhhhcc
Confidence 333333
No 285
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=33.95 E-value=6.1e+02 Score=27.06 Aligned_cols=90 Identities=9% Similarity=0.267 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHH
Q 004356 392 IELRTELENAASDVSNLFAKIERKDKIEEGNRILIQMFQSQLTQQLEILHKTVATSVTQQEQQLKDMEEDMQSFVSTKAE 471 (759)
Q Consensus 392 ~~l~~~l~~~~~~~~~L~~ki~~k~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (759)
..+...+.+-...++.++.|+.. +.|...-..|.+.|-..+++|+ -+..++..|+++..-
T Consensus 11 d~~lKkv~EG~~~F~~i~~K~~~-----~~n~~QKEK~E~DLKkEIKKLQ---------------R~RdQIK~W~~~~di 70 (233)
T PF04065_consen 11 DRTLKKVQEGVEEFDEIYEKVES-----ATNQNQKEKLEADLKKEIKKLQ---------------RLRDQIKTWLSSNDI 70 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc-----ccCcchHHHHHHHHHHHHHHHH---------------HHHHHHHHHccCccc
Confidence 34444455555566677776663 4455555566666666666554 334455556654222
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhh
Q 004356 472 ATEELRGRLGKLKAMYGSGIKALDGIAGELDGN 504 (759)
Q Consensus 472 ~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 504 (759)
. + +..+...+..|-..++..+.+-...+.+
T Consensus 71 K--d-k~~L~e~Rk~IE~~MErFK~vEkesKtK 100 (233)
T PF04065_consen 71 K--D-KKKLLENRKLIEEQMERFKVVEKESKTK 100 (233)
T ss_pred c--c-HHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 1 1 2234445555555555566555555544
No 286
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=33.59 E-value=1e+03 Score=29.48 Aligned_cols=46 Identities=17% Similarity=0.159 Sum_probs=26.6
Q ss_pred hhhhchHHHHHHHHHhh-hhchHHHHHHHHHHHHhhhchhhHHHHHH
Q 004356 698 ENGKKDLEVVLQNCLKQ-AKMGAQQWRTAQESLLNLEKNNVAAVDSI 743 (759)
Q Consensus 698 ~~~~~~m~~~lq~c~~~-~~~~~~~w~~~~~~~~~l~~~~~~~~~s~ 743 (759)
..+...-+.-||.-++- -.-...+...+...||.--+-|.-+|-|+
T Consensus 566 ~~QQ~~y~~alqekvsevEsrl~E~L~~~E~rLNeARREHtKaVVsL 612 (739)
T PF07111_consen 566 TQQQEVYERALQEKVSEVESRLREQLSEMEKRLNEARREHTKAVVSL 612 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555533333 33455667777777777777776666554
No 287
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=33.51 E-value=14 Score=45.26 Aligned_cols=18 Identities=28% Similarity=0.494 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 004356 266 LYSEIDRLKQEVYAAREK 283 (759)
Q Consensus 266 l~~Ei~~Lk~el~~~r~k 283 (759)
+..++..+..++..++.+
T Consensus 265 ~~~~~e~le~ei~~L~q~ 282 (713)
T PF05622_consen 265 LKIELEELEKEIDELRQE 282 (713)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333334444444444443
No 288
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=33.16 E-value=1e+03 Score=29.35 Aligned_cols=95 Identities=20% Similarity=0.197 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHhhHhhHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHhHH
Q 004356 471 EATEELRGRLGKLKAMYGSGIKALDGIAGELDGNSRSTFGDLNSEVSKHSHALEDLF----KGIASEADSLLNDLQSSLY 546 (759)
Q Consensus 471 ~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 546 (759)
..++++..++..+++++..-++.+..+..+|..-+...--.|...+...-..+.+.. ..+..+..+-++.++..+.
T Consensus 160 ~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~~l~~~Lg~~~~~~vt~~~~sL~~~~~~~~~~is~etl~~L~~~v~~l~ 239 (660)
T KOG4302|consen 160 EKLEELREHLNELQKEKSDRLEKVLELKEEIKSLCSVLGLDFSMTVTDVEPSLVDHDGEQSRSISDETLDRLDKMVKKLK 239 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhhhhhhhccCcccccCCHHHHHHHHHHHHHHH
Confidence 557788888888888888777777777777766665544444444433333332222 2233344455555555555
Q ss_pred HHHH----HHHHHHHHHHHHHHH
Q 004356 547 KQEE----KLTAYAQQQREAHSR 565 (759)
Q Consensus 547 ~~~~----e~~~~~~~~~~~~~~ 565 (759)
+++. .+..++.+..+.|..
T Consensus 240 ~~k~qr~~kl~~l~~~~~~LWn~ 262 (660)
T KOG4302|consen 240 EEKKQRLQKLQDLRTKLLELWNL 262 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 5433 245666667777764
No 289
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=32.94 E-value=6.4e+02 Score=27.02 Aligned_cols=177 Identities=11% Similarity=0.108 Sum_probs=0.0
Q ss_pred HHHHHHHHHh--HhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH--------------------hhhHHhhHhhHH
Q 004356 456 KDMEEDMQSF--VSTKAEATEELRGRLGKLKAMYGSGIKALDGIAGEL--------------------DGNSRSTFGDLN 513 (759)
Q Consensus 456 ~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~--------------------~~~~~~~~~~~~ 513 (759)
..+...+..| +.+-.+...+++..+.++..-++.......+++... .......|+.|.
T Consensus 37 d~~~~~~s~~~~v~~~~~eF~Emkey~d~L~~~L~~ieki~~Rl~kr~~ey~~~~~~fgk~~~lws~~E~~L~~~L~~~a 116 (243)
T cd07666 37 QTVKAVASSVRGVKNRPEEFTEMNEYVEAFSQKINVLDKISQRIYKEQREYFEELKEYGPIYTLWSASEEELADSLKGMA 116 (243)
T ss_pred HHHHHHHHhccccCCCCHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccchhhhHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhhHHHHHHhHHH
Q 004356 514 SEVSKHSHALEDLFKGIASEADSLLNDLQSSLYKQEEKLTAYAQQQREAHSRAVENARSVSKVTVNFFKTLDMHASNLTK 593 (759)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 593 (759)
..++..+.++...+..+...+-..+.+...-+...+.-+ . .|...+..++.-...-.....=.+.+...+..+..
T Consensus 117 ~~~d~~~~~~~~~~~~l~~~f~~~Lkeyv~y~~slK~vl----k-~R~~~Q~~le~k~e~l~k~~~dr~~~~~ev~~~e~ 191 (243)
T cd07666 117 SCIDRCCKATDKRMKGLSEQLLPVIHEYVLYSETLMGVI----K-RRDQIQAELDSKVEALANKKADRDLLKEEIEKLED 191 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H-HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 004356 594 IVEEAQTVNDQKLFEFEKKFEESAANEERQLLEKVAELLASSNARKKQLVQ 644 (759)
Q Consensus 594 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~ 644 (759)
-+++.++. ++.+++..-...+..+-+-+...+.....-|...+.
T Consensus 192 kve~a~~~-------~k~e~~Rf~~~k~~D~k~~~~~yae~~i~~~~~~~~ 235 (243)
T cd07666 192 KVECANNA-------LKADWERWKQNMQTDLRSAFTDMAENNISYYEECLA 235 (243)
T ss_pred HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 290
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=32.72 E-value=2.7e+02 Score=33.23 Aligned_cols=7 Identities=57% Similarity=0.800 Sum_probs=3.0
Q ss_pred cccCCCc
Q 004356 153 DLAGSEN 159 (759)
Q Consensus 153 DLAGSEr 159 (759)
|+.|+.+
T Consensus 8 ~~gG~gn 14 (907)
T KOG2264|consen 8 KLGGSGN 14 (907)
T ss_pred ecCCCCC
Confidence 4444443
No 291
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=32.70 E-value=8.4e+02 Score=28.28 Aligned_cols=12 Identities=33% Similarity=0.495 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 004356 353 EHALSDLEEKHR 364 (759)
Q Consensus 353 ~~~l~~~e~~~~ 364 (759)
+.+|.++++++.
T Consensus 54 E~~l~~Lq~e~~ 65 (459)
T KOG0288|consen 54 ELELNRLQEENT 65 (459)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 292
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=32.55 E-value=5.6e+02 Score=26.22 Aligned_cols=20 Identities=15% Similarity=0.096 Sum_probs=11.3
Q ss_pred eeeEEeecCCCCCChHhHHH
Q 004356 217 KTCIIATVSPSIHCLEETLS 236 (759)
Q Consensus 217 kT~mIatVSP~~~~~eETls 236 (759)
....+-.||+.+..-.+.+.
T Consensus 18 ~~~~~q~vS~~p~tR~dVi~ 37 (189)
T PF10211_consen 18 GQLWIQFVSSAPATRQDVIQ 37 (189)
T ss_pred CeeeEeeeCCCCCCHHHHHH
Confidence 34556666666665555443
No 293
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=32.14 E-value=6.5e+02 Score=26.84 Aligned_cols=14 Identities=29% Similarity=0.513 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q 004356 302 AMAEKIERMELESE 315 (759)
Q Consensus 302 ~~~~~i~~~~~~l~ 315 (759)
.+..++.+++....
T Consensus 9 Ele~rL~q~eee~~ 22 (246)
T PF00769_consen 9 ELEERLRQMEEEMR 22 (246)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444443333
No 294
>PF04394 DUF536: Protein of unknown function, DUF536; InterPro: IPR007489 This is a C-terminal region from several bacterial proteins of unknown function that may be involved in a theta-type replication mechanism.
Probab=31.90 E-value=2e+02 Score=22.96 Aligned_cols=39 Identities=44% Similarity=0.535 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 313 ESESKDKQLMELQELYNSQLLLTAELSEKLEKTEKKLEE 351 (759)
Q Consensus 313 ~l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~ 351 (759)
.+..+++++.++...++.++.........++.++.++++
T Consensus 4 Ql~~kd~qI~~l~kLLDQQQ~L~L~~~k~le~L~~el~E 42 (45)
T PF04394_consen 4 QLEEKDKQIEELQKLLDQQQQLALQDNKKLEELKAELEE 42 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666778888888887766555555555555554443
No 295
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=31.83 E-value=9.4e+02 Score=28.59 Aligned_cols=7 Identities=29% Similarity=0.672 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 004356 519 HSHALED 525 (759)
Q Consensus 519 ~~~~~~~ 525 (759)
|...++.
T Consensus 274 hp~riee 280 (514)
T TIGR03319 274 HPARIEE 280 (514)
T ss_pred CHHHHHH
Confidence 3333443
No 296
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=31.61 E-value=5.9e+02 Score=26.16 Aligned_cols=85 Identities=18% Similarity=0.248 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHH
Q 004356 346 EKKLEETEHALSDLEEKHRQANATIKEKDFLIANLLKSEKALVERAIELRTELENAASDVSNLFAKIERKDKIEEGNRIL 425 (759)
Q Consensus 346 ~~~l~~~~~~l~~~e~~~~~~~~~l~e~e~~i~~l~~~e~~l~~~~~~l~~~l~~~~~~~~~L~~ki~~k~~~~~~n~~~ 425 (759)
+.++......+..++.++..+...+.+.-..+. .-.+++..+...+....+++..|..|+++--.+-.....+
T Consensus 71 r~DiarvA~lvinlE~kvD~lee~fdd~~d~l~-------~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L~llE~~~~~ 143 (189)
T TIGR02132 71 KEDIANVASLVINLEEKVDLIEEFFDDKFDELE-------AQQEQAPALKKDVTKLKQDIKSLDKKLDKILELLEGQQKT 143 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhhCchHHhHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 344444445555555555555444444322222 1123445566667777777778887777665555555555
Q ss_pred HHHHHHHHHHHH
Q 004356 426 IQMFQSQLTQQL 437 (759)
Q Consensus 426 ~~~~~~~~~~~~ 437 (759)
..+++..+..++
T Consensus 144 ~~~~~~~~~~~~ 155 (189)
T TIGR02132 144 QDELKETIQKQI 155 (189)
T ss_pred hhHHHHHHHHHH
Confidence 555444444433
No 297
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=31.21 E-value=5.9e+02 Score=26.06 Aligned_cols=28 Identities=29% Similarity=0.455 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 304 AEKIERMELESESKDKQLMELQELYNSQ 331 (759)
Q Consensus 304 ~~~i~~~~~~l~~~~~~l~~l~~~~~~~ 331 (759)
...+..+...++.....+.+++..++..
T Consensus 68 ~~~~~~l~~~~~~~~~~i~~l~~~i~~~ 95 (188)
T PF03962_consen 68 QNKLEKLQKEIEELEKKIEELEEKIEEA 95 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444544445555555544443
No 298
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=31.15 E-value=7e+02 Score=26.88 Aligned_cols=77 Identities=25% Similarity=0.294 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Q 004356 304 AEKIERMELESESKDKQLMELQELYNSQLLLTAELSEKLEKTEKKLEETEHALSDLEEKHRQANATIKEKDFLIANL 380 (759)
Q Consensus 304 ~~~i~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~l~~~e~~~~~~~~~l~e~e~~i~~l 380 (759)
.-++-.+...+...-.--.+|+...++-.....+|+.++++++++-.+..-...=++.++..+-.+..+.+.+|..+
T Consensus 22 hHQvlTLqcQLRDQ~~ahreLQas~dEa~~L~~~L~~kl~eLqkk~~Ea~lAVtPLKak~AslV~kc~eRn~Li~~l 98 (277)
T PF15030_consen 22 HHQVLTLQCQLRDQGSAHRELQASRDEATRLQDELQGKLEELQKKQHEANLAVTPLKAKLASLVQKCRERNRLITHL 98 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444334445555555555555566666666666666666666666666666666666666666554
No 299
>cd09237 V_ScBro1_like Protein-interacting V-domain of Saccharomyces cerevisiae Bro1 and related domains. This family contains the V-shaped (V) domain of Saccharomyces cerevisiae Bro1, and related domains. It belongs to the V_Alix_like superfamily which also includes the V-domain of Saccharomyces cerevisiae Rim20 (also known as PalA), mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Bro1 interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in endosomal trafficking. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. Bro1 also has an N-terminal Bro1-like domain, which binds Snf7, a component of the ESCRT-III complex, and a C-terminal proline-rich
Probab=31.02 E-value=7.9e+02 Score=27.46 Aligned_cols=30 Identities=7% Similarity=0.339 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 004356 437 LEILHKTVATSVTQQEQQLKDMEEDMQSFV 466 (759)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (759)
.+-+..++...+..|...+..+......|.
T Consensus 259 f~p~~~~l~~~~~~Q~~ll~el~~~~~~f~ 288 (356)
T cd09237 259 FKPLQNRLEATIFKQSSLINELKIELDKLF 288 (356)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555444443
No 300
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=30.98 E-value=1e+03 Score=28.72 Aligned_cols=215 Identities=21% Similarity=0.182 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Q 004356 292 RYLQEEAEKKAMAEKIERMELESESKDKQLMELQELY--NSQLLLTAELSEKLEKTEKKLEETEHALSDL--EEKHRQAN 367 (759)
Q Consensus 292 ~~~~~e~e~~~~~~~i~~~~~~l~~~~~~l~~l~~~~--~~~~~~~~~l~~~l~~~~~~l~~~~~~l~~~--e~~~~~~~ 367 (759)
.|.+...+...+..+...+..+.+-++-+++++...- ..+-.+.......|...++-.+.....+.-+ +...-..-
T Consensus 165 ~w~~~~~~l~~~~~~~~e~~~~~d~L~fq~~Ele~~~l~~gE~e~L~~e~~rLsn~ekl~~~~~~a~~~L~ge~~~~~~~ 244 (557)
T COG0497 165 AWKQARRELEDLQEKERERAQRADLLQFQLEELEELNLQPGEDEELEEERKRLSNSEKLAEAIQNALELLSGEDDTVSAL 244 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCchhHH
Q ss_pred HhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 368 ATIKEKDFLIANLLKSEKALVERAIELRTELENAASDVSNLFAKIERKDKIEEGNRILIQMFQSQLTQQLEILHKTVATS 447 (759)
Q Consensus 368 ~~l~e~e~~i~~l~~~e~~l~~~~~~l~~~l~~~~~~~~~L~~ki~~k~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (759)
..+-.-...+.........+...+..+...+....+-...|.+.++.-.---..-..+... -..+..+.+++...
T Consensus 245 ~~l~~a~~~l~~~~~~d~~l~~~~~~l~ea~~~l~ea~~el~~~~~~le~Dp~~L~~ve~R-----l~~L~~l~RKY~~~ 319 (557)
T COG0497 245 SLLGRALEALEDLSEYDGKLSELAELLEEALYELEEASEELRAYLDELEFDPNRLEEVEER-----LFALKSLARKYGVT 319 (557)
T ss_pred HHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH-----HHHHHHHHHHhCCC
Q ss_pred HHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhhHHHHH----HHHHHHHhhhHHhhHhhH
Q 004356 448 VTQQEQQLKDMEEDMQSFVSTKAEATEELRGRLGKLKAMYGSGIKAL----DGIAGELDGNSRSTFGDL 512 (759)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i----~~~~~~~~~~~~~~~~~~ 512 (759)
+...-...+.+..++.. +......+..|++++..++..+...-+.+ +..+..+.+.+...|..|
T Consensus 320 ~~~l~~~~~~~~~el~~-L~~~~~~~~~Le~~~~~l~~~~~~~A~~Ls~~R~~~A~~L~~~v~~eL~~L 387 (557)
T COG0497 320 IEDLLEYLDKIKEELAQ-LDNSEESLEALEKEVKKLKAELLEAAEALSAIRKKAAKELEKEVTAELKAL 387 (557)
T ss_pred HHHHHHHHHHHHHHHHH-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 301
>KOG2220 consensus Predicted signal transduction protein [General function prediction only]
Probab=30.97 E-value=1.1e+03 Score=29.24 Aligned_cols=54 Identities=20% Similarity=0.172 Sum_probs=29.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhhHHHHHHhHHHHH
Q 004356 541 LQSSLYKQEEKLTAYAQQQREAHSRAVENARSVSKVTVNFFKTLDMHASNLTKIV 595 (759)
Q Consensus 541 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 595 (759)
+.+.++....+...+-..++.+.....+....+++ -..|++++...+.++..-+
T Consensus 626 ~~~~~~~~~~~re~~l~~L~~a~~~~~el~~~~~~-g~~fY~~l~~~~~~~~~~~ 679 (714)
T KOG2220|consen 626 ERSFLSPSSKKREKLLSTLAAAYDSYRELSKKLSE-GTEFYNDLTNRLVNLANRV 679 (714)
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHHhcCcH-HHHHHHHHHHHHHHHHHHh
Confidence 33444444444445555555555544444444442 3457777777777776544
No 302
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=30.85 E-value=3.8e+02 Score=23.77 Aligned_cols=55 Identities=16% Similarity=0.271 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 314 SESKDKQLMELQELYNSQLLLTAELSEKLEKTEKKLEETEHALSDLEEKHRQANA 368 (759)
Q Consensus 314 l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~l~~~e~~~~~~~~ 368 (759)
++....++..+...+.......++++.++...-.++...+..+-+++.....++.
T Consensus 6 Ld~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~ 60 (79)
T PF08581_consen 6 LDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQ 60 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555444444566666666666666666666666666655555443
No 303
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=30.77 E-value=5.8e+02 Score=30.04 Aligned_cols=21 Identities=14% Similarity=0.325 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004356 261 AMIKDLYSEIDRLKQEVYAAR 281 (759)
Q Consensus 261 ~li~~l~~Ei~~Lk~el~~~r 281 (759)
.-++.|-.++..++.++..+.
T Consensus 59 DTlrTlva~~k~~r~~~~~l~ 79 (472)
T TIGR03752 59 DTLRTLVAEVKELRKRLAKLI 79 (472)
T ss_pred chHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666555443
No 304
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=30.58 E-value=7.9e+02 Score=27.31 Aligned_cols=107 Identities=14% Similarity=0.163 Sum_probs=51.4
Q ss_pred cCCCceeeEEeecCCCCCChHhHHHHH-----HHHHHhccCccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 004356 212 LGGKTKTCIIATVSPSIHCLEETLSTL-----DYAHRAKNIKNKPEINQKMMKSAMIKDLYSEIDRLKQEVYAAREKNGI 286 (759)
Q Consensus 212 LGGnskT~mIatVSP~~~~~eETlsTL-----~fA~rak~Ikn~p~vN~~~~~~~li~~l~~Ei~~Lk~el~~~r~k~g~ 286 (759)
..+.+..+-|---++++.......+++ .|..+. ..........--...+.++..++......|...|.++|+
T Consensus 126 ~~~~s~ii~I~~~~~dP~~A~~ian~l~~~~~~~i~~~---~~~~~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~ 202 (362)
T TIGR01010 126 VDSVSGILTLNVTAFDAEEAQKINQRLLKEGERLINRL---NERARKDTIAFAENEVKEAEQRLNATKAELLKYQIKNKV 202 (362)
T ss_pred ecCCCCeEEEEEEecCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 455565555555566665555555555 222221 000000000001233455556666666666777788888
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 287 YIPRDRYLQEEAEKKAMAEKIERMELESESKDKQLMELQELY 328 (759)
Q Consensus 287 ~~~~~~~~~~e~e~~~~~~~i~~~~~~l~~~~~~l~~l~~~~ 328 (759)
..|.... ......+..++.++...+.++.+++..+
T Consensus 203 ~d~~~~~-------~~~~~~i~~L~~~l~~~~~~l~~l~~~~ 237 (362)
T TIGR01010 203 FDPKAQS-------SAQLSLISTLEGELIRVQAQLAQLRSIT 237 (362)
T ss_pred cChHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 7654322 1223344555555555555555555433
No 305
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=30.55 E-value=3.1e+02 Score=29.49 Aligned_cols=20 Identities=40% Similarity=0.609 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004356 393 ELRTELENAASDVSNLFAKI 412 (759)
Q Consensus 393 ~l~~~l~~~~~~~~~L~~ki 412 (759)
.|+.+++.+..|.-.|+.|+
T Consensus 111 ~L~~Ev~~L~~DN~kLYEKi 130 (248)
T PF08172_consen 111 SLRREVESLRADNVKLYEKI 130 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 306
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=30.41 E-value=9.6e+02 Score=28.24 Aligned_cols=10 Identities=10% Similarity=0.159 Sum_probs=4.7
Q ss_pred HHHHHHHHHH
Q 004356 557 QQQREAHSRA 566 (759)
Q Consensus 557 ~~~~~~~~~~ 566 (759)
++++..+++.
T Consensus 513 qkLKs~leKL 522 (527)
T PF15066_consen 513 QKLKSRLEKL 522 (527)
T ss_pred HHHHHHHHHH
Confidence 4455555443
No 307
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=29.97 E-value=1.5e+03 Score=30.23 Aligned_cols=28 Identities=25% Similarity=0.220 Sum_probs=16.4
Q ss_pred hHHhhhHhHHHHhhhhhhhhhhhHHhHH
Q 004356 653 SASSRTSQLQKEMSTMQDSTFSVKAEWS 680 (759)
Q Consensus 653 ~~~~~~~~~~~~~s~mq~~~~~~k~~~~ 680 (759)
.+......+-+.|...+.--...+.++.
T Consensus 1052 ~l~se~~~~lg~~ke~e~~i~~~k~eL~ 1079 (1294)
T KOG0962|consen 1052 KLSSEKNLLLGEMKQYESQIKKLKQELR 1079 (1294)
T ss_pred HhhhHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 3445555566666666666666666665
No 308
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=29.87 E-value=6.7e+02 Score=26.25 Aligned_cols=90 Identities=21% Similarity=0.303 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHhhCCCcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 268 SEIDRLKQEVYAAREKNGIYIPRDRYLQEEAEKKAMAEKIERMELESESKDKQLMELQELYNSQLLLTAELSEKLEKTEK 347 (759)
Q Consensus 268 ~Ei~~Lk~el~~~r~k~g~~~~~~~~~~~e~e~~~~~~~i~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~ 347 (759)
.||.-||.+|......- ..-..+...++..+......+...+.++..++..+.....+......+|.....
T Consensus 10 GEIsLLKqQLke~q~E~---------~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~ 80 (202)
T PF06818_consen 10 GEISLLKQQLKESQAEV---------NQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKN 80 (202)
T ss_pred hhHHHHHHHHHHHHHHH---------HHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhC
Confidence 46777777765443210 001122223334444444455555555555555544433333344444444443
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004356 348 KLEETEHALSDLEEKHRQA 366 (759)
Q Consensus 348 ~l~~~~~~l~~~e~~~~~~ 366 (759)
+..-+...+..++.++..+
T Consensus 81 Ea~lLrekl~~le~El~~L 99 (202)
T PF06818_consen 81 EAELLREKLGQLEAELAEL 99 (202)
T ss_pred HHHHhhhhhhhhHHHHHHH
Confidence 3333333444444333333
No 309
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=29.62 E-value=7.9e+02 Score=27.02 Aligned_cols=30 Identities=27% Similarity=0.161 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 004356 471 EATEELRGRLGKLKAMYGSGIKALDGIAGE 500 (759)
Q Consensus 471 ~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~ 500 (759)
..+-++++.+..++..+....+.+..+...
T Consensus 180 ~~l~~l~~~l~~lr~~l~~~~~~l~~l~~~ 209 (322)
T COG0598 180 ERLGELRRSLVYLRRALAPLRDVLLRLARR 209 (322)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhc
Confidence 344566666666666666655555555443
No 310
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=29.53 E-value=1.2e+03 Score=28.96 Aligned_cols=37 Identities=14% Similarity=-0.030 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHhhHh
Q 004356 474 EELRGRLGKLKAMYGSGIKALDGIAGELDGNSRSTFG 510 (759)
Q Consensus 474 ~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 510 (759)
.+|..++..++++=+.....++--+.-|+..++..=+
T Consensus 474 ~dL~~ELqqLReERdRl~aeLqlSa~liqqeV~~ArE 510 (739)
T PF07111_consen 474 TDLSLELQQLREERDRLDAELQLSARLIQQEVGRARE 510 (739)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4777777777777766666666555556555544433
No 311
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=29.27 E-value=18 Score=42.32 Aligned_cols=18 Identities=17% Similarity=0.401 Sum_probs=0.0
Q ss_pred EEEEEEEEcCceeecCCC
Q 004356 40 KVTFLELYNEEISDLLAL 57 (759)
Q Consensus 40 ~vS~lEIYnE~v~DLL~~ 57 (759)
.||++.+....+.|.+..
T Consensus 101 SvSmmDLQD~~~~~~~~s 118 (495)
T PF12004_consen 101 SVSMMDLQDNRVGDMGHS 118 (495)
T ss_dssp ------------------
T ss_pred cceeecCcCccccccccc
Confidence 566777766666666543
No 312
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=29.20 E-value=3.9e+02 Score=25.92 Aligned_cols=20 Identities=25% Similarity=0.302 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004356 305 EKIERMELESESKDKQLMEL 324 (759)
Q Consensus 305 ~~i~~~~~~l~~~~~~l~~l 324 (759)
+.+..+...+....+.+..+
T Consensus 44 ~~~~~~~~~l~~i~~~l~~L 63 (141)
T PF13874_consen 44 EEIAQHRERLKEINDKLEEL 63 (141)
T ss_dssp --HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344443333333333333
No 313
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=28.85 E-value=7e+02 Score=26.14 Aligned_cols=31 Identities=16% Similarity=0.278 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Q 004356 349 LEETEHALSDLEEKHRQANATIKEKDFLIAN 379 (759)
Q Consensus 349 l~~~~~~l~~~e~~~~~~~~~l~e~e~~i~~ 379 (759)
...+...+..+......+...+.+++..|..
T Consensus 25 ~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~ 55 (207)
T PF05010_consen 25 EQELKKKYEELHKENQEMRKIMEEYEKTIAQ 55 (207)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444443
No 314
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=28.48 E-value=5.5e+02 Score=24.83 Aligned_cols=21 Identities=19% Similarity=0.370 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004356 393 ELRTELENAASDVSNLFAKIE 413 (759)
Q Consensus 393 ~l~~~l~~~~~~~~~L~~ki~ 413 (759)
.+...++.....+.+|..||.
T Consensus 100 ~i~~dv~~v~~~V~~Le~ki~ 120 (126)
T PF07889_consen 100 QIGDDVDSVQQMVEGLEGKID 120 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444455555544
No 315
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=27.78 E-value=6.1e+02 Score=30.50 Aligned_cols=10 Identities=30% Similarity=0.308 Sum_probs=5.0
Q ss_pred HHHHHHHHHH
Q 004356 404 DVSNLFAKIE 413 (759)
Q Consensus 404 ~~~~L~~ki~ 413 (759)
|.+.|..++.
T Consensus 263 D~~~L~~~~~ 272 (555)
T TIGR03545 263 DLKRLENKYA 272 (555)
T ss_pred HHHHHHHHhC
Confidence 4555555443
No 316
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=27.68 E-value=1e+03 Score=27.71 Aligned_cols=18 Identities=22% Similarity=0.479 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004356 260 SAMIKDLYSEIDRLKQEV 277 (759)
Q Consensus 260 ~~li~~l~~Ei~~Lk~el 277 (759)
+.++..+..+++.++++.
T Consensus 142 d~l~~~ld~e~~~~~~e~ 159 (447)
T KOG2751|consen 142 DVLLNKLDKEVEDAEDEV 159 (447)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555555555555543
No 317
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.66 E-value=7.2e+02 Score=25.95 Aligned_cols=118 Identities=18% Similarity=0.250 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 260 SAMIKDLYSEIDRLKQEVYAAREKNGIYIPRDRYLQEEAEKKAMAEKIERMELESESKDKQLMELQELYNSQLLLTAELS 339 (759)
Q Consensus 260 ~~li~~l~~Ei~~Lk~el~~~r~k~g~~~~~~~~~~~e~e~~~~~~~i~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~l~ 339 (759)
...|.+|..|+.+++.++...|+.++-..-..+....-.+++.++.+...+. ++.|+-.+... .-
T Consensus 32 e~KIskLDaeL~k~~~Qi~k~R~gpaq~~~KqrAlrVLkQKK~yE~q~d~L~-------------~QsfNMeQa~~--t~ 96 (218)
T KOG1655|consen 32 EKKISKLDAELCKYKDQIKKTRPGPAQNALKQRALRVLKQKKMYENQKDSLD-------------QQSFNMEQANF--TA 96 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH-------------HhcccHHHHHH--HH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 340 EKLEKTEKKLEETEHALSDLEEKHRQANATIKEKDFLIANLLKSEKALVERAIELRTEL 398 (759)
Q Consensus 340 ~~l~~~~~~l~~~~~~l~~~e~~~~~~~~~l~e~e~~i~~l~~~e~~l~~~~~~l~~~l 398 (759)
.-|+.++..+..++....+++...+..+. ..|..+++-=.-+.+++.++...|
T Consensus 97 e~LKdtq~Tv~AmK~~~k~mK~~ykkvnI------d~IedlQDem~Dlmd~a~EiQE~L 149 (218)
T KOG1655|consen 97 ESLKDTQATVAAMKDTNKEMKKQYKKVNI------DKIEDLQDEMEDLMDQADEIQEVL 149 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCH------HHHHHHHHHHHHHHHHHHHHHHHH
No 318
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=27.34 E-value=8.1e+02 Score=26.40 Aligned_cols=35 Identities=17% Similarity=0.272 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHH
Q 004356 451 QEQQLKDMEEDMQSFVSTKAEATEELRGRLGKLKA 485 (759)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 485 (759)
++.+.-.|...+++-+...+..+.++-.+++.+..
T Consensus 172 eR~qty~~a~nidsqLk~l~~dL~~ii~~lN~~~~ 206 (254)
T KOG2196|consen 172 EREQTYKMAENIDSQLKRLSEDLKQIIKSLNTMSK 206 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccC
Confidence 33344444444444444444444444444444433
No 319
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=27.30 E-value=1.1e+03 Score=28.14 Aligned_cols=150 Identities=8% Similarity=0.042 Sum_probs=85.0
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHhhHhhHHHHHHHHHHHHHHHHHhhHHHH---------H
Q 004356 465 FVSTKAEATEELRGRLGKLKAMYGSGIKALDGIAGELDGNSRSTFGDLNSEVSKHSHALEDLFKGIASEA---------D 535 (759)
Q Consensus 465 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~ 535 (759)
++..-.-++...+.++..+-+.+...++.+....+. +.+....+.++...++....++..++..+.++. .
T Consensus 325 ~l~sp~~aL~~A~rEvl~~~d~ie~ml~~~~~~~~~-~~~~~~~i~~~e~~vd~~~~~Ik~YL~~ls~~~Lse~es~r~~ 403 (533)
T COG1283 325 ALDSPVVALANAAREVLRLGDSIEQMLERLYEYIEG-DAKKVKEIRKLEDAVDRLYEEIKLYLARLSKEGLSEEESRRWA 403 (533)
T ss_pred hhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHH
Confidence 444555567788888888888888888888777777 777778888888888888888877776655432 1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhhHHHHHHhHHHHHHHHHHhhhhhHHHHHHHHHH
Q 004356 536 SLLNDLQSSLYKQEEKLTAYAQQQREAHSRAVENARSVSKVTVNFFKTLDMHASNLTKIVEEAQTVNDQKLFEFEKKFEE 615 (759)
Q Consensus 536 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~ 615 (759)
.+++ ....+..+-.-+..+.++.+.+....+.-.+.--+-...+|+-..+.+.....++.........++-+-++++++
T Consensus 404 ~iid-~a~~lE~IgDiie~l~~~~~kk~~~~~~fse~~~~el~~l~~~~~~n~~~a~~~l~~~D~~~ar~lv~~k~~~r~ 482 (533)
T COG1283 404 EIID-AAINLEHIGDIIERLLELADKKIANGRAFSEDGLEELDALFALTLENLRLAISVLVTGDLELARRLVERKKRVRR 482 (533)
T ss_pred HHHH-HHHhHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 1111 111121111111223343444444444434444444445555555555555555555554455555544444443
Q ss_pred H
Q 004356 616 S 616 (759)
Q Consensus 616 ~ 616 (759)
.
T Consensus 483 ~ 483 (533)
T COG1283 483 L 483 (533)
T ss_pred H
Confidence 3
No 320
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=27.20 E-value=7e+02 Score=25.66 Aligned_cols=83 Identities=23% Similarity=0.259 Sum_probs=0.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004356 290 RDRYLQEEAEKKAMAEKIERMELESESKDKQLMELQELYNSQLLLTAELSEKLEKTEKKLEETEHALSDLEEKHRQANAT 369 (759)
Q Consensus 290 ~~~~~~~e~e~~~~~~~i~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~l~~~e~~~~~~~~~ 369 (759)
.+.+.....+.+.+..++..-+.....++..+.++...+...+.+...+..+.+....++..++.....++..+..++..
T Consensus 102 k~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~ 181 (190)
T PF05266_consen 102 KDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELE 181 (190)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhH
Q 004356 370 IKE 372 (759)
Q Consensus 370 l~e 372 (759)
...
T Consensus 182 F~~ 184 (190)
T PF05266_consen 182 FQS 184 (190)
T ss_pred HHH
No 321
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=27.15 E-value=1.9e+02 Score=32.86 Aligned_cols=18 Identities=22% Similarity=0.433 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004356 396 TELENAASDVSNLFAKIE 413 (759)
Q Consensus 396 ~~l~~~~~~~~~L~~ki~ 413 (759)
+.++++.+.++.+.+.+.
T Consensus 144 ~Ri~e~Eeris~lEd~~~ 161 (370)
T PF02994_consen 144 SRIDELEERISELEDRIE 161 (370)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHH
Confidence 334444444444444443
No 322
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=26.69 E-value=1.1e+03 Score=27.81 Aligned_cols=26 Identities=15% Similarity=0.175 Sum_probs=11.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 420 EGNRILIQMFQSQLTQQLEILHKTVA 445 (759)
Q Consensus 420 ~~n~~~~~~~~~~~~~~~~~~~~~~~ 445 (759)
.+........+.++....+.+.+++.
T Consensus 98 ~ek~~~l~~~~~~L~~~F~~LA~~il 123 (475)
T PRK10361 98 DDKIRQMINSEQRLSEQFENLANRIF 123 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444445555555554444
No 323
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.38 E-value=4.4e+02 Score=23.01 Aligned_cols=14 Identities=14% Similarity=0.212 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHHH
Q 004356 346 EKKLEETEHALSDL 359 (759)
Q Consensus 346 ~~~l~~~~~~l~~~ 359 (759)
+.+-+.++......
T Consensus 52 ~~eneqlk~e~~~W 65 (79)
T COG3074 52 ERENEQLKEEQNGW 65 (79)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 324
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.24 E-value=1.3e+03 Score=28.58 Aligned_cols=14 Identities=43% Similarity=0.612 Sum_probs=8.4
Q ss_pred hhhhHHHHHHHHHH
Q 004356 602 NDQKLFEFEKKFEE 615 (759)
Q Consensus 602 ~~~~l~~~~~~~~~ 615 (759)
..++|.++..-|++
T Consensus 238 ~~qqL~ey~~IF~e 251 (793)
T KOG2180|consen 238 CSQQLEEYEQIFRE 251 (793)
T ss_pred HHHHHHHHHHHHhc
Confidence 34566666666655
No 325
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=26.10 E-value=1.2e+02 Score=33.88 Aligned_cols=50 Identities=16% Similarity=0.234 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 004356 321 LMELQELYNSQLLLTAELSEKLEKTEKKLEETEHALSDLEEKHRQANATI 370 (759)
Q Consensus 321 l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~l~~~e~~~~~~~~~l 370 (759)
...|...+........+|...+..+...+.+++..|..+...+..++..+
T Consensus 44 v~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl 93 (326)
T PF04582_consen 44 VASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSL 93 (326)
T ss_dssp --------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334344333333444444444444444444444444444444444333
No 326
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=25.95 E-value=4.5e+02 Score=23.01 Aligned_cols=21 Identities=33% Similarity=0.319 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 004356 262 MIKDLYSEIDRLKQEVYAARE 282 (759)
Q Consensus 262 li~~l~~Ei~~Lk~el~~~r~ 282 (759)
.|.+|.+|.-.||-.++-+.+
T Consensus 8 ~i~~L~KENF~LKLrI~fLee 28 (75)
T PF07989_consen 8 QIDKLKKENFNLKLRIYFLEE 28 (75)
T ss_pred HHHHHHHhhhhHHHHHHHHHH
Confidence 344455555555554444443
No 327
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=25.95 E-value=1.1e+03 Score=27.29 Aligned_cols=24 Identities=25% Similarity=0.261 Sum_probs=11.8
Q ss_pred eeeEEeecCCCCCChHhHHHHHHH
Q 004356 217 KTCIIATVSPSIHCLEETLSTLDY 240 (759)
Q Consensus 217 kT~mIatVSP~~~~~eETlsTL~f 240 (759)
.|.+|+||-...---.-||.-|=.
T Consensus 41 qTAvlvtvltG~liSA~tLailf~ 64 (499)
T COG4372 41 QTAVLVTVLTGMLISAATLAILFL 64 (499)
T ss_pred cceeehhhhhcchhhHHHHHHHHH
Confidence 566666665443333334444433
No 328
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=25.42 E-value=1.4e+03 Score=28.59 Aligned_cols=53 Identities=28% Similarity=0.353 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004356 317 KDKQLMELQELYNSQLLLTAELSEKLEKTEKKLEETEHALSDLEEKHRQANAT 369 (759)
Q Consensus 317 ~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~l~~~e~~~~~~~~~ 369 (759)
..++-.++.+.++.+-....+....++.+-+.|.+++..+.++.-.+.+....
T Consensus 197 ~~kqa~~~~~~we~l~~~~~~w~k~v~~~le~l~elq~a~~el~~~l~~ae~~ 249 (966)
T KOG4286|consen 197 LRKQAEEVNTEWEKLNLHSADWQRKIDETLERLQELQEATDELDLKLRQAEVI 249 (966)
T ss_pred HHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhh
Confidence 34555667777777777777777777777777777777777777666655543
No 329
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=25.39 E-value=8.7e+02 Score=26.09 Aligned_cols=33 Identities=27% Similarity=0.380 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHH
Q 004356 393 ELRTELENAASDVSNLFAKIERKDKIEEGNRILIQM 428 (759)
Q Consensus 393 ~l~~~l~~~~~~~~~L~~ki~~k~~~~~~n~~~~~~ 428 (759)
+|..++......+..|..+++ .+..+|-.++.+
T Consensus 97 ELE~elr~~~~~~~~L~~Ev~---~L~~DN~kLYEK 129 (248)
T PF08172_consen 97 ELEEELRKQQQTISSLRREVE---SLRADNVKLYEK 129 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 344444444444444444444 334444444433
No 330
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=25.37 E-value=9.4e+02 Score=26.48 Aligned_cols=11 Identities=45% Similarity=0.902 Sum_probs=5.4
Q ss_pred CCCcCC-cchhH
Q 004356 284 NGIYIP-RDRYL 294 (759)
Q Consensus 284 ~g~~~~-~~~~~ 294 (759)
+||.-| +++|+
T Consensus 49 HGikPP~PEQYL 60 (305)
T PF15290_consen 49 HGIKPPNPEQYL 60 (305)
T ss_pred CCCCCCCHHHhc
Confidence 455433 45664
No 331
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=25.28 E-value=9.6e+02 Score=26.60 Aligned_cols=15 Identities=20% Similarity=0.069 Sum_probs=8.7
Q ss_pred hhhhHHHHHHHHHHH
Q 004356 176 INKSLLTLGRVINAL 190 (759)
Q Consensus 176 INkSLlaLg~VI~aL 190 (759)
+=+|-..+.+|+..|
T Consensus 72 ~L~Sr~~~~~v~~~l 86 (362)
T TIGR01010 72 YMRSRDMLAALEKEL 86 (362)
T ss_pred HHhhHHHHHHHHhcC
Confidence 345556666666655
No 332
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=24.70 E-value=1.2e+03 Score=27.60 Aligned_cols=18 Identities=22% Similarity=0.385 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004356 262 MIKDLYSEIDRLKQEVYA 279 (759)
Q Consensus 262 li~~l~~Ei~~Lk~el~~ 279 (759)
-+..++.++.+++.++..
T Consensus 35 eL~~~qeel~~~k~~l~~ 52 (522)
T PF05701_consen 35 ELEKAQEELAKLKEQLEA 52 (522)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345566677777776654
No 333
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=24.60 E-value=3.3e+02 Score=32.98 Aligned_cols=362 Identities=15% Similarity=0.126 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 263 IKDLYSEIDRLKQEVYAAREKNGIYIPRDRYLQEEAEKKAMAEKIERMELESESKDKQLMELQELYNSQLLLTAELSEKL 342 (759)
Q Consensus 263 i~~l~~Ei~~Lk~el~~~r~k~g~~~~~~~~~~~e~e~~~~~~~i~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~l 342 (759)
|..+.+|+..|-.++......-...+....+.......-.-...--.+...+..+..++..|...+.....+..++..++
T Consensus 35 i~~~~~E~~~L~~~lg~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~L~~~~~~L~~~le~l~~~~~eR~~~~~~L~~~~ 114 (619)
T PF03999_consen 35 IADAEAELADLSSELGEEQEHLCRELEKEPLSLEEEKDILQLEKSMPLKEQLPKLRPQLEELRKEKEERMQEFKELQEQL 114 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhhhhcchhHHHHHHhcccccccccccchhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHH
Q 004356 343 EKTEKKLEETEHALSDLEEKHRQAN--ATIKEKDFLIANLLKSEKALVERAIELRTELENAASDVSNLFA-KIERKDKIE 419 (759)
Q Consensus 343 ~~~~~~l~~~~~~l~~~e~~~~~~~--~~l~e~e~~i~~l~~~e~~l~~~~~~l~~~l~~~~~~~~~L~~-ki~~k~~~~ 419 (759)
+.+...|......+.........+- ..+.+....+..+..-...-......+...+.....++..-.. ......-..
T Consensus 115 ~~l~~~Lg~~~~~~~~~~~~~~~l~S~~~l~~l~~~l~~L~~e~~~R~~~v~~l~~~I~~l~~~L~~~~~~~~~e~~l~~ 194 (619)
T PF03999_consen 115 EQLCEELGELPLCLNPFDIDESDLPSLEELEELRQHLQRLQEEKERRLEEVRELREEIISLMEELGIDPERTSFEKDLLS 194 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhccccccccCCccccCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccchhhccc
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHH----HhhHHHHHH
Q 004356 420 EGNRILIQMFQSQLTQQLEILHKTVATSVTQQEQQLKDMEEDMQSFVSTKAEATEELRGRLGKLKAM----YGSGIKALD 495 (759)
Q Consensus 420 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~i~ 495 (759)
-........+....-..+..+...+.....+....++.+...+...-.......++....+.....+ +....+++.
T Consensus 195 ~~~~~~~~~Ls~~~l~~L~~~~~~L~~~k~~r~~~~~~l~~~i~~LW~~L~~~~ee~~~F~~~~~~ls~~~i~~l~~El~ 274 (619)
T PF03999_consen 195 YSEDEESFCLSDENLEKLQELLQELEEEKEEREEKLQELREKIEELWNRLDVPEEEREAFLEENSGLSLDTIEALEEELE 274 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhccCcchHHHHHHHHHHHH
Q ss_pred HHHHHHhhhHHhhHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 496 GIAGELDGNSRSTFGDLNSEVSKHSHALEDLFKGIASEADSLLNDLQS--SLYKQEEKLTAYAQQQREAHSRAVENARSV 573 (759)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 573 (759)
++..--..+...+.+....-+...+...+=.-..... |...+.+.-+ .|..++.|+..+.. .-+.+...++.+..-
T Consensus 275 RL~~lK~~~lk~~I~~~R~ei~elWd~~~~s~eer~~-F~~~~~d~~~E~lL~~hE~Ei~~Lk~-~~~~~k~Il~~v~k~ 352 (619)
T PF03999_consen 275 RLEELKKQNLKEFIEKKRQEIEELWDKCHYSEEERQA-FTPFYIDSYTEELLELHEEEIERLKE-EYESRKPILELVEKW 352 (619)
T ss_dssp -------------------------------------------------------------HHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCHHHHHH-HHHHhcccchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q ss_pred hHHHHH--hHhhHHHHHHhHHH----HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 004356 574 SKVTVN--FFKTLDMHASNLTK----IVEEAQTVNDQKLFEFEKKFEESAANEERQLLEKVAELLASSNARK 639 (759)
Q Consensus 574 ~~~~~~--~~~~~~~~~~~l~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~l~~~~~~~~ 639 (759)
...... ++......-++|.. ++.++ +.+..-...--.|.+++...|...-...
T Consensus 353 ~~l~~~~~~Le~~~~D~~Rl~~RGg~LLkEE-------------k~rk~i~k~lPkle~~L~~~l~~wE~e~ 411 (619)
T PF03999_consen 353 ESLWEEMEELEESSKDPSRLNNRGGHLLKEE-------------KERKRIQKKLPKLEEELKKKLEEWEEEH 411 (619)
T ss_dssp HHHHHHHHHHHHHHH-CCGG------HHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcChhhhcccccHHHHHH-------------HHHHHHHHHhhHHHHHHHHHHHHHHHHc
No 334
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=24.57 E-value=1.4e+03 Score=28.22 Aligned_cols=15 Identities=27% Similarity=0.348 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHH
Q 004356 514 SEVSKHSHALEDLFK 528 (759)
Q Consensus 514 ~~~~~~~~~~~~~~~ 528 (759)
++++-|-+++.++|.
T Consensus 446 s~~EIYNe~i~DlL~ 460 (670)
T KOG0239|consen 446 SMLEIYNEAIRDLLS 460 (670)
T ss_pred ehhHHHHHHHHHhcc
Confidence 455555555555443
No 335
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=24.43 E-value=1e+03 Score=26.50 Aligned_cols=41 Identities=12% Similarity=0.191 Sum_probs=25.9
Q ss_pred hhHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHH
Q 004356 507 STFGDLNSEVSKHSHALEDLFKGIASEADSLLNDLQSSLYK 547 (759)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (759)
..|+.-.-.+.+|---+.+=+.+....++..|..|++.|.+
T Consensus 160 KDLqRctvSL~RYr~~lkee~d~S~k~ik~~F~~l~~cL~d 200 (302)
T PF07139_consen 160 KDLQRCTVSLTRYRVVLKEEMDSSIKKIKQTFAELQSCLMD 200 (302)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555666556666666666777777777777754
No 336
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=24.42 E-value=5.1e+02 Score=23.09 Aligned_cols=34 Identities=15% Similarity=0.291 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 004356 433 LTQQLEILHKTVATSVTQQEQQLKDMEEDMQSFV 466 (759)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (759)
+...+...+.++.....+-..+.+.....+..|+
T Consensus 36 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~V 69 (94)
T PF05957_consen 36 AEEALDDARDRAEDAADQAREQAREAAEQTEDYV 69 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444333444444444444444
No 337
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=24.38 E-value=1.4e+03 Score=28.02 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 605 KLFEFEKKFEESAANEERQLLEKV 628 (759)
Q Consensus 605 ~l~~~~~~~~~~~~~~~~~l~~~i 628 (759)
.+..|-......+..|+..|-.++
T Consensus 346 ~m~~f~~~a~~~~eeEr~~L~~qL 369 (617)
T PF15070_consen 346 AMVEFFNSALAQAEEERARLRRQL 369 (617)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 344444444555555665555443
No 338
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=24.14 E-value=1.5e+03 Score=28.42 Aligned_cols=15 Identities=33% Similarity=0.313 Sum_probs=7.5
Q ss_pred CCCCCChHhHHHHHH
Q 004356 225 SPSIHCLEETLSTLD 239 (759)
Q Consensus 225 SP~~~~~eETlsTL~ 239 (759)
.|....-.-++.|+-
T Consensus 334 GpN~gGKTt~lktig 348 (782)
T PRK00409 334 GPNTGGKTVTLKTLG 348 (782)
T ss_pred CCCCCCcHHHHHHHH
Confidence 455555444555543
No 339
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=23.80 E-value=7.4e+02 Score=24.75 Aligned_cols=111 Identities=20% Similarity=0.216 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Q 004356 301 KAMAEKIERMELESESK-DKQLMELQELYNSQLLLTAELSEKLEKTEKKLEETEHALSDLEEKHRQANATIKEKDFLIAN 379 (759)
Q Consensus 301 ~~~~~~i~~~~~~l~~~-~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~l~~~e~~~~~~~~~l~e~e~~i~~ 379 (759)
++..+.|+........+ ..++-.+++.-..+.....+|..--.=+.+++....+.+.....+++-+......++.....
T Consensus 37 ~AkEeeIErkKmeVrekVq~~LgrveEetkrLa~ireeLE~l~dP~RkEv~~vRkkID~vNreLkpl~~~cqKKEkEyke 116 (159)
T PF04949_consen 37 RAKEEEIERKKMEVREKVQAQLGRVEEETKRLAEIREELEVLADPMRKEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKE 116 (159)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 380 LLKSEKALVERAIELRTELENAASDVSNLFAK 411 (759)
Q Consensus 380 l~~~e~~l~~~~~~l~~~l~~~~~~~~~L~~k 411 (759)
.+++-+.....-..|...|.++..+-.++.-|
T Consensus 117 alea~nEknkeK~~Lv~~L~eLv~eSE~~rmK 148 (159)
T PF04949_consen 117 ALEAFNEKNKEKAQLVTRLMELVSESERLRMK 148 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 340
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.66 E-value=8.9e+02 Score=25.61 Aligned_cols=66 Identities=18% Similarity=0.330 Sum_probs=39.2
Q ss_pred CCceeeEEeecCCCCCChHhHHHHHHHHHHhccCccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 004356 214 GKTKTCIIATVSPSIHCLEETLSTLDYAHRAKNIKNKPEINQKMMKSAMIKDLYSEIDRLKQEVYAAREKNG 285 (759)
Q Consensus 214 GnskT~mIatVSP~~~~~eETlsTL~fA~rak~Ikn~p~vN~~~~~~~li~~l~~Ei~~Lk~el~~~r~k~g 285 (759)
|.-|--+|..|-..-...++.+.-++..-| ++.. |...+-...++.|+.++.+|+.++......++
T Consensus 31 ~~ekk~~l~~i~~~leEa~ell~qMdlEvr--~lp~----~~Rs~~~~KlR~yksdl~~l~~e~k~~~~~~~ 96 (220)
T KOG1666|consen 31 GSEKKQLLSEIDSKLEEANELLDQMDLEVR--ELPP----NFRSSYLSKLREYKSDLKKLKRELKRTTSRNL 96 (220)
T ss_pred chHHHHHHHHHHHhHHHHHHHHHHHHHHHH--hCCc----hhhhHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 333444455555555555666666655443 2222 22223456689999999999999988774443
No 341
>TIGR01541 tape_meas_lam_C phage tail tape measure protein, lambda family. This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage.
Probab=23.59 E-value=1.1e+03 Score=26.51 Aligned_cols=47 Identities=11% Similarity=0.157 Sum_probs=23.1
Q ss_pred HHHHHHHHhhhHHhhHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHH
Q 004356 494 LDGIAGELDGNSRSTFGDLNSEVSKHSHALEDLFKGIASEADSLLNDLQSSLYK 547 (759)
Q Consensus 494 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (759)
..+.+..++......+.. ....+.+++.+-...|+++..++...|..
T Consensus 164 a~n~a~~~~~~~~~af~g-------m~dal~~fvttGk~~f~d~~~sil~dLa~ 210 (332)
T TIGR01541 164 ATNVASAAAQLATNAFGG-------MASNIAQMLTTGKANWKSFAVSVLSDIAD 210 (332)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhHhhHHHHHHHHHHHHHH
Confidence 344444444444444444 34444455555555666666666555544
No 342
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=23.39 E-value=5.4e+02 Score=27.69 Aligned_cols=29 Identities=10% Similarity=0.260 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 338 LSEKLEKTEKKLEETEHALSDLEEKHRQA 366 (759)
Q Consensus 338 l~~~l~~~~~~l~~~~~~l~~~e~~~~~~ 366 (759)
|..+++.++.++..++..++.+.-+++++
T Consensus 59 l~~ql~~lq~ev~~LrG~~E~~~~~l~~~ 87 (263)
T PRK10803 59 LQQQLSDNQSDIDSLRGQIQENQYQLNQV 87 (263)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33334444444444444444443333333
No 343
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=23.33 E-value=1.2e+03 Score=27.14 Aligned_cols=50 Identities=12% Similarity=0.150 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHhhCCCcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 270 IDRLKQEVYAAREKNGIYIPRDRYLQEEAEKKAMAEKIERMELESESKDKQLMELQE 326 (759)
Q Consensus 270 i~~Lk~el~~~r~k~g~~~~~~~~~~~e~e~~~~~~~i~~~~~~l~~~~~~l~~l~~ 326 (759)
+..-+..|...|.++|+.-|.... ......|..++.++-..+.++..|+.
T Consensus 258 l~~Ar~aL~~fRn~~gvlDP~~~a-------~~~~~lI~~Le~qLa~~~aeL~~L~~ 307 (434)
T PRK15178 258 LGAARLELLKIQHIQKDIDPKETI-------TAIYQLIAGFETQLAEAKAEYAQLMV 307 (434)
T ss_pred HHHHHHHHHHHHHhCCCcChHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444555666777877664322 12234445555555555455554443
No 344
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=23.07 E-value=1.4e+03 Score=27.59 Aligned_cols=26 Identities=12% Similarity=0.063 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH
Q 004356 615 ESAANEERQLLEKVAELLASSNARKK 640 (759)
Q Consensus 615 ~~~~~~~~~l~~~i~~l~~~~~~~~~ 640 (759)
.....+.+...+++..-++.-...|.
T Consensus 520 ~~~~~~~~~~~~~l~~~l~e~i~e~~ 545 (555)
T TIGR03545 520 KEIAAQIEKAKAKLKAKLNEKLSEQL 545 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333344444444444444444443
No 345
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=23.05 E-value=1.5e+03 Score=28.20 Aligned_cols=47 Identities=13% Similarity=0.217 Sum_probs=26.2
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhHH------HHHHHHHHHHHHHHHHHHHHH
Q 004356 520 SHALEDLFKGIASEADSLLNDLQSSLY------KQEEKLTAYAQQQREAHSRAV 567 (759)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~e~~~~~~~~~~~~~~~~ 567 (759)
-..++..+.+++-....++.. ...+. +.++.+..+.+|.++..+.++
T Consensus 614 ~~eie~v~~S~gL~~~~~~k~-e~a~~~~~p~~~~k~KIe~L~~eIkkkIe~av 666 (762)
T PLN03229 614 ELELAGVLKSMGLEVIGVTKK-NKDTAEQTPPPNLQEKIESLNEEINKKIERVI 666 (762)
T ss_pred HHHHHHHHhccCchhhhhhhh-hhcccccCCChhhHHHHHHHHHHHHHHHHHHh
Confidence 334566666666555533322 22221 137777788887777766544
No 346
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=22.91 E-value=1.2e+03 Score=26.87 Aligned_cols=92 Identities=11% Similarity=0.124 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHhhHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHH
Q 004356 473 TEELRGRLGKLKAMYGSGIKALDGIAGELDGNSRSTFGDLNSEVSKHSHALEDLFKGIASEADSLLNDLQSSLYKQEEKL 552 (759)
Q Consensus 473 ~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 552 (759)
+..+.+++..+++......+.+..+...++....-..+.+.. -.-....+=+.|.+++.-++.|+
T Consensus 214 l~~~~~el~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqE---------------Er~R~erLEeqlNd~~elHq~Ei 278 (395)
T PF10267_consen 214 LQKILEELREIKESQSRLEESIEKLKEQYQREYQFILEALQE---------------ERYRYERLEEQLNDLTELHQNEI 278 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------hHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555565555555555555555555544443322222221 12222233344555555588999
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHhHHHHH
Q 004356 553 TAYAQQQREAHS----RAVENARSVSKVTVN 579 (759)
Q Consensus 553 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 579 (759)
..+.+++..-.+ .+-|.++++.+.+..
T Consensus 279 ~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es 309 (395)
T PF10267_consen 279 YNLKQELASMEEKMAYQSYERARDIWEVMES 309 (395)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhHHHHHHHH
Confidence 988888766555 344444444433333
No 347
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=22.87 E-value=8.9e+02 Score=25.34 Aligned_cols=20 Identities=20% Similarity=0.416 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004356 394 LRTELENAASDVSNLFAKIE 413 (759)
Q Consensus 394 l~~~l~~~~~~~~~L~~ki~ 413 (759)
++..+.....++..|...+.
T Consensus 85 Lrekl~~le~El~~Lr~~l~ 104 (202)
T PF06818_consen 85 LREKLGQLEAELAELREELA 104 (202)
T ss_pred hhhhhhhhHHHHHHHHHHHH
Confidence 33444444444444444433
No 348
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=22.60 E-value=1.1e+03 Score=26.29 Aligned_cols=16 Identities=31% Similarity=0.324 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 004356 372 EKDFLIANLLKSEKAL 387 (759)
Q Consensus 372 e~e~~i~~l~~~e~~l 387 (759)
+++.++.++..-|..|
T Consensus 92 eKe~L~~~~e~EEE~l 107 (310)
T PF09755_consen 92 EKETLALKYEQEEEFL 107 (310)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444433333
No 349
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=22.55 E-value=6.5e+02 Score=23.83 Aligned_cols=26 Identities=35% Similarity=0.477 Sum_probs=20.9
Q ss_pred hhhHhHHHHhhhhhhhhhhhHHhHHHH
Q 004356 656 SRTSQLQKEMSTMQDSTFSVKAEWSAH 682 (759)
Q Consensus 656 ~~~~~~~~~~s~mq~~~~~~k~~~~~~ 682 (759)
++-..++..|+.|.-||.+++ +|...
T Consensus 54 s~~~~lk~dVsemKpVT~dV~-rwklm 79 (112)
T PF07439_consen 54 SSVSTLKADVSEMKPVTDDVK-RWKLM 79 (112)
T ss_pred HHHHHHHhhHHhccchHHHHH-HHHHh
Confidence 344568899999999999999 78653
No 350
>PRK00106 hypothetical protein; Provisional
Probab=22.49 E-value=1.4e+03 Score=27.45 Aligned_cols=17 Identities=6% Similarity=-0.027 Sum_probs=6.7
Q ss_pred hhhhhhhHHhHHHHHHh
Q 004356 669 QDSTFSVKAEWSAHMNK 685 (759)
Q Consensus 669 q~~~~~~k~~~~~~~~~ 685 (759)
+.++.+..+--.+|+.+
T Consensus 464 E~ia~~~~gV~~~yaiq 480 (535)
T PRK00106 464 EEIANSFDGVQNSFALQ 480 (535)
T ss_pred HHHHhcCCcHHHHHHHh
Confidence 33333333333444433
No 351
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo
Probab=22.38 E-value=9.3e+02 Score=25.40 Aligned_cols=34 Identities=6% Similarity=0.031 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHhHHhhhHhHHHHhhhhhhh
Q 004356 638 RKKQLVQMAVQDLRESASSRTSQLQKEMSTMQDS 671 (759)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~mq~~ 671 (759)
++..-+..++....+.+......+..-+..++.+
T Consensus 171 k~~~Kl~~k~~ka~~~~~k~e~~y~~~~~~l~~~ 204 (239)
T cd07658 171 KEDEKLEAKRKKGEESRLKAENEYYTCCVRLERL 204 (239)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555555555555443
No 352
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=22.07 E-value=5.4e+02 Score=24.28 Aligned_cols=24 Identities=17% Similarity=0.192 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 305 EKIERMELESESKDKQLMELQELY 328 (759)
Q Consensus 305 ~~i~~~~~~l~~~~~~l~~l~~~~ 328 (759)
+.+..++..+...-+++..|+...
T Consensus 8 d~l~~le~~l~~l~~el~~LK~~~ 31 (110)
T PRK13169 8 DALDDLEQNLGVLLKELGALKKQL 31 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444443333444433333
No 353
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=21.96 E-value=1.6e+03 Score=28.08 Aligned_cols=10 Identities=10% Similarity=0.248 Sum_probs=4.8
Q ss_pred hCCCCCCCCC
Q 004356 192 EHSGHVPYRD 201 (759)
Q Consensus 192 ~~~~hIPYRd 201 (759)
.-.-+||...
T Consensus 355 q~G~~vpa~~ 364 (782)
T PRK00409 355 KSGLPIPANE 364 (782)
T ss_pred HhCCCcccCC
Confidence 3334556553
No 354
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.92 E-value=1.6e+03 Score=28.07 Aligned_cols=244 Identities=13% Similarity=0.124 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCcCCcchhHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH
Q 004356 263 IKDLYSEIDRLKQEVYAAREKNGIYIPRDRYLQEEAEKKAMAEKIERME----------LESESKDKQLMELQELYNSQL 332 (759)
Q Consensus 263 i~~l~~Ei~~Lk~el~~~r~k~g~~~~~~~~~~~e~e~~~~~~~i~~~~----------~~l~~~~~~l~~l~~~~~~~~ 332 (759)
|...+.|..+|..++.++..-.........+........++...++++. ..+...+.+...+..+|..+-
T Consensus 639 i~~~q~e~~klqeq~~Al~~i~~~~fa~ID~~Sa~rqIael~~~lE~L~~t~~~~~~~~~~l~aaQT~~~vler~~~~~~ 718 (1104)
T COG4913 639 IMRQQGEYIKLQEQANALAHIQALNFASIDLPSAQRQIAELQARLERLTHTQSDIAIAKAALDAAQTRQKVLERQYQQEV 718 (1104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchhhcchhhHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 333 LLTAELSEKLEKTEKKLEETEHALSD-LEEKHRQANATIKEKDFLIANLLKSEKALVERAIELRTELENAASDVSNLFAK 411 (759)
Q Consensus 333 ~~~~~l~~~l~~~~~~l~~~~~~l~~-~e~~~~~~~~~l~e~e~~i~~l~~~e~~l~~~~~~l~~~l~~~~~~~~~L~~k 411 (759)
.++..+++.++..+.........-.+ .-+.+..+-...=-.......-..-+..-......|...++.....+..|.+.
T Consensus 719 ~e~~~~k~~lkrA~~~~~k~~si~~~~~t~~~q~~~~a~f~q~a~~~h~~~vd~~~~~~r~~LqkrIDa~na~Lrrl~~~ 798 (1104)
T COG4913 719 TECAGLKKDLKRAAMLSRKVHSIAKQGMTGALQALGAAHFPQVAPEQHDDIVDIERIEHRRQLQKRIDAVNARLRRLREE 798 (1104)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhhhhhChHhhhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q ss_pred HHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHH-HHHHHHHHHHHHHHHhhH
Q 004356 412 IERKDKIEEGNRILIQMFQSQLTQQLEILHKTVATSVTQQEQQLKDMEEDMQSFVSTKAEA-TEELRGRLGKLKAMYGSG 490 (759)
Q Consensus 412 i~~k~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~ 490 (759)
|- ..-..-.+.|..-..++...++.+-+-+.....=++..|-....++..+++..+.. +..+..++..-+..|.+-
T Consensus 799 Ii---g~m~~~k~~~~a~~~e~~ael~~ipey~~rL~~L~~D~Lpef~arF~~llN~~S~~~v~q~~~~L~~er~~IeER 875 (1104)
T COG4913 799 II---GRMSDAKKEDTAALSEVGAELDDIPEYLARLQTLTEDALPEFLARFQELLNRSSDDGVTQLLSHLDHERALIEER 875 (1104)
T ss_pred HH---HHHHHHHhcchhhhhhhccCHhHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhhhHHhhH
Q 004356 491 IKALDGIAGELDGNSRSTF 509 (759)
Q Consensus 491 ~~~i~~~~~~~~~~~~~~~ 509 (759)
++.|+.-...++-+++..|
T Consensus 876 Ie~IN~SL~~vdfn~gRyl 894 (1104)
T COG4913 876 IEAINDSLRRVDFNSGRYL 894 (1104)
T ss_pred HHHHHHHHhhccccCCceE
No 355
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=21.69 E-value=1.3e+03 Score=26.89 Aligned_cols=18 Identities=17% Similarity=0.338 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004356 261 AMIKDLYSEIDRLKQEVY 278 (759)
Q Consensus 261 ~li~~l~~Ei~~Lk~el~ 278 (759)
..+..|..|+..+-.++.
T Consensus 11 ~~~~~~~~e~~~i~~e~e 28 (473)
T PF14643_consen 11 KALESFHEELASISEEVE 28 (473)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345566666666665554
No 356
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=21.69 E-value=1.4e+03 Score=27.18 Aligned_cols=93 Identities=14% Similarity=0.169 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHhHHhh----hHhHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhh-hhhhhhhhhchHHHHHHHHHh
Q 004356 639 KKQLVQMAVQDLRESASSR----TSQLQKEMSTMQDSTFSVKAEWSAHMNKTESHYLE-DTSAVENGKKDLEVVLQNCLK 713 (759)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~s~mq~~~~~~k~~~~~~~~~~e~~~~e-~~~~~~~~~~~m~~~lq~c~~ 713 (759)
+..-|...+..|+..+... ..-|..++..+..++.+ ..-..+-+......+.+ ++...+.-..++..+-..|..
T Consensus 406 ~~~~l~~a~~~l~~~l~~~~~~~~~p~~~el~~l~~~~~~-d~~v~~~l~~l~~~a~~~Gv~s~~~L~~rf~~v~~~~r~ 484 (582)
T PF09731_consen 406 RAQQLWLAVDALKSALDSGNAGSPRPFEDELRALKELAPD-DELVDAALSSLPPEAAQRGVPSEAQLRNRFERVAPEVRR 484 (582)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCCCCHHHHHHHHHHhCCC-ChHHHHHHHhcCHHHhhCCCCCHHHHHHHHHHHHHHHHH
Confidence 3344566677777766665 36778888888777333 22233333344444444 778888888888887777765
Q ss_pred hh---hchHHHHHHHHHHHHhh
Q 004356 714 QA---KMGAQQWRTAQESLLNL 732 (759)
Q Consensus 714 ~~---~~~~~~w~~~~~~~~~l 732 (759)
-+ ..++.-|.+.=+.|.++
T Consensus 485 ~~l~~~~~~g~~~~~~s~~~S~ 506 (582)
T PF09731_consen 485 ASLVPPEGAGLLGHLLSYLFSL 506 (582)
T ss_pred HHhcCCCCCCHHHHHHHHHHhe
Confidence 52 33444555555555443
No 357
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=21.64 E-value=1.2e+03 Score=26.29 Aligned_cols=12 Identities=17% Similarity=0.426 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 004356 353 EHALSDLEEKHR 364 (759)
Q Consensus 353 ~~~l~~~e~~~~ 364 (759)
+..+.++...++
T Consensus 45 kkrLk~L~~sLk 56 (330)
T PF07851_consen 45 KKRLKELKKSLK 56 (330)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 358
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=21.58 E-value=1.3e+03 Score=26.81 Aligned_cols=29 Identities=21% Similarity=0.369 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 297 EAEKKAMAEKIERMELESESKDKQLMELQ 325 (759)
Q Consensus 297 e~e~~~~~~~i~~~~~~l~~~~~~l~~l~ 325 (759)
+..++.+.+..+.+-..++.++.-++.|+
T Consensus 205 ~~~k~~L~~~sd~Ll~kVdDLQD~VE~LR 233 (424)
T PF03915_consen 205 ESGKKKLSEESDRLLTKVDDLQDLVEDLR 233 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444443
No 359
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.57 E-value=1.2e+03 Score=26.37 Aligned_cols=11 Identities=27% Similarity=0.153 Sum_probs=5.0
Q ss_pred HHHHHHHHHHH
Q 004356 180 LLTLGRVINAL 190 (759)
Q Consensus 180 LlaLg~VI~aL 190 (759)
|..|-+++.+.
T Consensus 124 Lv~Liq~l~a~ 134 (365)
T KOG2391|consen 124 LVGLIQELIAA 134 (365)
T ss_pred HHHHHHHHHHH
Confidence 44444544444
No 360
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=21.55 E-value=5.4e+02 Score=22.37 Aligned_cols=15 Identities=20% Similarity=0.341 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHH
Q 004356 399 ENAASDVSNLFAKIE 413 (759)
Q Consensus 399 ~~~~~~~~~L~~ki~ 413 (759)
......+++|-.|++
T Consensus 56 ~~~~~rl~~LL~kl~ 70 (72)
T PF06005_consen 56 NAWQERLRSLLGKLE 70 (72)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhh
Confidence 333344444444443
No 361
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=21.51 E-value=8.6e+02 Score=24.66 Aligned_cols=22 Identities=9% Similarity=0.250 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHH
Q 004356 621 ERQLLEKVAELLASSNARKKQL 642 (759)
Q Consensus 621 ~~~l~~~i~~l~~~~~~~~~~~ 642 (759)
|+...-..-+.+...-+.|..+
T Consensus 138 r~e~qk~~~~yv~~~k~~q~~~ 159 (165)
T PF09602_consen 138 REEWQKVLDAYVEQAKSSQKEL 159 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444433
No 362
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=21.50 E-value=6.5e+02 Score=23.27 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 004356 307 IERMELESESKDKQLMELQELY 328 (759)
Q Consensus 307 i~~~~~~l~~~~~~l~~l~~~~ 328 (759)
++.+...+...+.++..+...+
T Consensus 37 ~~~l~~~~~~~~~Rl~~lE~~l 58 (106)
T PF10805_consen 37 IEKLEERLDEHDRRLQALETKL 58 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444433333
No 363
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.99 E-value=1.4e+03 Score=26.75 Aligned_cols=35 Identities=26% Similarity=0.465 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHH-hhHHH-HHHHHHHHHHhHHHHH
Q 004356 515 EVSKHSHALEDLFK-GIASE-ADSLLNDLQSSLYKQE 549 (759)
Q Consensus 515 ~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~ 549 (759)
+..+-..++...++ .++.| +..++++++..+..++
T Consensus 318 AyksGs~alK~il~~~~s~ekVed~Ldev~et~d~~~ 354 (439)
T KOG2911|consen 318 AYKSGSEALKAILAQGGSTEKVEDVLDEVNETLDRQE 354 (439)
T ss_pred HHHHhHHHHHHHHhccCChhhHHHHHHHHHHHHhhHH
Confidence 33344444555555 23334 6777777777775544
No 364
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=20.97 E-value=5.4e+02 Score=22.16 Aligned_cols=19 Identities=32% Similarity=0.412 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHhhC
Q 004356 266 LYSEIDRLKQEVYAAREKN 284 (759)
Q Consensus 266 l~~Ei~~Lk~el~~~r~k~ 284 (759)
|..++..|+..+..+..++
T Consensus 3 Lea~~~~Lr~rLd~~~rk~ 21 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKN 21 (69)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555555555444443
No 365
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=20.77 E-value=2e+02 Score=32.18 Aligned_cols=44 Identities=16% Similarity=0.262 Sum_probs=0.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Q 004356 339 SEKLEKTEKKLEETEHALSDLEEKHRQANATIKEKDFLIANLLK 382 (759)
Q Consensus 339 ~~~l~~~~~~l~~~~~~l~~~e~~~~~~~~~l~e~e~~i~~l~~ 382 (759)
...|..+...+..++..+..+...+..+...+......|..+..
T Consensus 76 ~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~ssIS~Lqs 119 (326)
T PF04582_consen 76 TSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSDHSSSISDLQS 119 (326)
T ss_dssp ------------------------------------------HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhhHHHHHH
Confidence 33333333333333344444443333444444444444444433
No 366
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=20.54 E-value=1.5e+03 Score=27.07 Aligned_cols=16 Identities=25% Similarity=0.268 Sum_probs=7.3
Q ss_pred hhhhHHHHHHHHHHHh
Q 004356 176 INKSLLTLGRVINALV 191 (759)
Q Consensus 176 INkSLlaLg~VI~aL~ 191 (759)
|+.||..|.++...++
T Consensus 215 ~~~sl~~l~~~~~k~a 230 (518)
T PF10212_consen 215 ILSSLVSLTNGTGKIA 230 (518)
T ss_pred HHHHHHHHHhhhHHHH
Confidence 4444444444444443
No 367
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.45 E-value=1e+03 Score=26.29 Aligned_cols=37 Identities=14% Similarity=0.295 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 297 EAEKKAMAEKIERMELESESKDKQLMELQELYNSQLL 333 (759)
Q Consensus 297 e~e~~~~~~~i~~~~~~l~~~~~~l~~l~~~~~~~~~ 333 (759)
+..++.+.++.......+.....++.+++++...++.
T Consensus 121 e~~k~~Ld~~~~~~~~~~~~l~~~va~v~q~~~~qq~ 157 (300)
T KOG2629|consen 121 EADKRQLDDQFDKAAKSLNALMDEVAQVSQLLATQQS 157 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555565555566666666666666666555443
No 368
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=20.39 E-value=1.2e+03 Score=25.80 Aligned_cols=30 Identities=17% Similarity=0.226 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 004356 437 LEILHKTVATSVTQQEQQLKDMEEDMQSFV 466 (759)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (759)
.+.+...+...+..|...+..+......|.
T Consensus 252 f~~~~~~i~~~~~~Q~~ll~~i~~~~~~f~ 281 (342)
T cd08915 252 FDKDLTYVEKTKKKQIELIKEIDAANQEFS 281 (342)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444445555555444444443
No 369
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=20.37 E-value=1.1e+03 Score=25.64 Aligned_cols=104 Identities=21% Similarity=0.239 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHH
Q 004356 307 IERMELESESKDKQLMELQELYNSQLLLTAELSEKLEKTEKKLEETEHALSDLEEKHRQANATIKEKDFLIANLLKSEKA 386 (759)
Q Consensus 307 i~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~l~~~e~~~~~~~~~l~e~e~~i~~l~~~e~~ 386 (759)
++.....+.=++..+.++.+...... .......+.+.....+...+.++...++++.+....+++-...+.+....-..
T Consensus 161 Lesa~vkV~WLR~~L~Ei~Ea~e~~~-~~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~ 239 (269)
T PF05278_consen 161 LESAKVKVDWLRSKLEEILEAKEIYD-QHETREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGE 239 (269)
T ss_pred HHHcCcchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 387 LVERAIELRTELENAASDVSNLFAK 411 (759)
Q Consensus 387 l~~~~~~l~~~l~~~~~~~~~L~~k 411 (759)
+......+..++.-+...|..++.+
T Consensus 240 l~~~~~~l~k~~~~~~sKV~kf~~~ 264 (269)
T PF05278_consen 240 LEMESTRLSKTIKSIKSKVEKFHGK 264 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC
Done!