Query 004356
Match_columns 759
No_of_seqs 381 out of 1857
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 22:38:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004356.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004356hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cob_A Kinesin heavy chain-lik 100.0 4.3E-67 1.5E-71 574.0 21.4 271 2-293 91-363 (369)
2 2y65_A Kinesin, kinesin heavy 100.0 4.2E-66 1.4E-70 565.8 18.6 260 3-275 97-361 (365)
3 1x88_A Kinesin-like protein KI 100.0 4.9E-66 1.7E-70 564.7 15.7 235 15-256 123-359 (359)
4 3b6u_A Kinesin-like protein KI 100.0 3.6E-66 1.2E-70 566.9 14.2 255 2-266 113-371 (372)
5 2vvg_A Kinesin-2; motor protei 100.0 5.1E-65 1.7E-69 554.4 19.6 243 3-258 102-346 (350)
6 3bfn_A Kinesin-like protein KI 100.0 2.4E-65 8.3E-70 562.3 16.9 259 3-279 111-374 (388)
7 2wbe_C Bipolar kinesin KRP-130 100.0 2.1E-65 7.1E-70 562.1 15.8 237 13-258 133-372 (373)
8 2owm_A Nckin3-434, related to 100.0 2.6E-64 9E-69 563.7 21.0 255 2-264 148-430 (443)
9 1t5c_A CENP-E protein, centrom 100.0 2.2E-64 7.6E-69 549.4 19.6 246 2-258 89-339 (349)
10 1goj_A Kinesin, kinesin heavy 100.0 3.5E-64 1.2E-68 549.1 17.9 246 2-260 92-343 (355)
11 2zfi_A Kinesin-like protein KI 100.0 4.9E-64 1.7E-68 550.2 18.3 245 2-255 101-362 (366)
12 3lre_A Kinesin-like protein KI 100.0 7.6E-63 2.6E-67 538.8 18.9 233 3-247 118-355 (355)
13 2h58_A Kinesin-like protein KI 100.0 3.2E-62 1.1E-66 529.1 20.9 235 3-248 93-329 (330)
14 1bg2_A Kinesin; motor protein, 100.0 1E-62 3.5E-67 531.9 15.2 233 2-247 89-325 (325)
15 4a14_A Kinesin, kinesin-like p 100.0 4.6E-62 1.6E-66 530.9 18.1 236 2-245 95-344 (344)
16 3gbj_A KIF13B protein; kinesin 100.0 4.2E-62 1.4E-66 532.7 17.4 236 2-246 104-349 (354)
17 1ry6_A Internal kinesin; kines 100.0 7.4E-62 2.5E-66 531.3 16.6 238 3-257 97-341 (360)
18 1f9v_A Kinesin-like protein KA 100.0 2.2E-61 7.6E-66 525.8 19.4 243 3-252 97-346 (347)
19 2rep_A Kinesin-like protein KI 100.0 3.1E-61 1.1E-65 528.9 18.3 238 2-247 127-376 (376)
20 2nr8_A Kinesin-like protein KI 100.0 1.7E-61 5.7E-66 528.2 15.3 240 2-247 115-358 (358)
21 3t0q_A AGR253WP; kinesin, alph 100.0 6.4E-61 2.2E-65 522.7 19.6 243 3-251 98-348 (349)
22 3nwn_A Kinesin-like protein KI 100.0 2.4E-61 8.1E-66 527.2 14.5 240 2-247 116-359 (359)
23 4etp_A Kinesin-like protein KA 100.0 3.4E-60 1.2E-64 525.7 19.7 243 3-252 153-402 (403)
24 2heh_A KIF2C protein; kinesin, 100.0 2.6E-60 9.1E-65 522.2 16.2 230 2-250 146-385 (387)
25 1v8k_A Kinesin-like protein KI 100.0 3.4E-60 1.2E-64 524.4 15.0 232 2-252 166-407 (410)
26 3u06_A Protein claret segregat 100.0 1.7E-59 5.9E-64 520.5 16.0 233 3-251 151-386 (412)
27 3dc4_A Kinesin-like protein NO 100.0 1.2E-58 4E-63 503.3 13.8 225 3-252 107-340 (344)
28 4h1g_A Maltose binding protein 100.0 6E-57 2.1E-61 533.5 20.8 233 3-248 475-712 (715)
29 2kin_B Kinesin; motor protein, 100.0 1.9E-32 6.5E-37 246.7 4.6 99 173-271 1-100 (100)
30 3kin_B Kinesin heavy chain; mo 100.0 1.8E-29 6.1E-34 234.2 7.8 97 177-273 1-98 (117)
31 2o0a_A S.cerevisiae chromosome 98.2 2.6E-07 8.8E-12 96.8 1.9 188 16-252 104-294 (298)
32 3s84_A Apolipoprotein A-IV; fo 97.0 0.2 6.7E-06 52.6 25.3 31 504-534 118-148 (273)
33 1i84_S Smooth muscle myosin he 96.7 0.0044 1.5E-07 77.4 11.3 38 16-53 431-472 (1184)
34 1i84_S Smooth muscle myosin he 96.6 0.006 2.1E-07 76.2 10.9 9 48-56 520-528 (1184)
35 2v71_A Nuclear distribution pr 96.5 0.75 2.6E-05 45.6 24.1 118 311-428 48-169 (189)
36 3s84_A Apolipoprotein A-IV; fo 96.4 1.3 4.3E-05 46.5 32.6 22 646-667 239-260 (273)
37 3na7_A HP0958; flagellar bioge 95.1 3.5 0.00012 42.4 26.6 40 333-372 32-71 (256)
38 3oja_B Anopheles plasmodium-re 94.3 1.1 3.8E-05 51.1 18.0 31 221-251 391-421 (597)
39 2v71_A Nuclear distribution pr 94.1 4.9 0.00017 39.8 23.0 25 339-363 48-72 (189)
40 3vkg_A Dynein heavy chain, cyt 92.8 16 0.00054 50.1 27.2 9 676-684 2500-2508(3245)
41 2dfs_A Myosin-5A; myosin-V, in 92.0 4.7 0.00016 49.8 19.6 38 16-53 405-445 (1080)
42 2a01_A Apolipoprotein A-I; fou 92.0 6 0.00021 40.4 17.5 14 583-596 195-208 (243)
43 2v66_B Nuclear distribution pr 91.6 7.7 0.00026 35.2 17.2 30 390-419 78-107 (111)
44 2dfs_A Myosin-5A; myosin-V, in 91.3 7.3 0.00025 48.2 20.1 9 213-221 744-752 (1080)
45 3o0z_A RHO-associated protein 89.6 16 0.00053 35.5 24.0 22 392-413 107-128 (168)
46 3oja_B Anopheles plasmodium-re 88.6 9.6 0.00033 43.2 17.2 12 265-276 460-471 (597)
47 3vkg_A Dynein heavy chain, cyt 87.3 1.1E+02 0.0037 42.3 32.5 13 283-295 1887-1899(3245)
48 3ol1_A Vimentin; structural ge 83.7 26 0.00088 31.9 14.1 80 265-367 17-96 (119)
49 2v66_B Nuclear distribution pr 81.6 30 0.001 31.3 17.3 22 262-283 4-25 (111)
50 2fxo_A Myosin heavy chain, car 80.9 34 0.0012 31.4 18.3 9 266-274 18-26 (129)
51 3ghg_A Fibrinogen alpha chain; 80.4 31 0.001 39.0 15.4 41 406-446 88-128 (562)
52 3ghg_A Fibrinogen alpha chain; 80.4 32 0.0011 38.8 15.6 35 470-504 109-143 (562)
53 3r2p_A Apolipoprotein A-I; amp 79.5 29 0.00098 33.8 13.6 24 542-565 110-133 (185)
54 2lem_A Apolipoprotein A-I; lip 77.4 31 0.0011 34.4 13.5 24 502-525 71-94 (216)
55 2eqb_B RAB guanine nucleotide 76.4 40 0.0014 29.8 12.3 55 303-357 10-64 (97)
56 2lem_A Apolipoprotein A-I; lip 73.7 3 0.0001 42.0 4.8 88 503-593 94-182 (216)
57 3i00_A HIP-I, huntingtin-inter 72.7 30 0.001 31.7 10.8 24 258-281 12-35 (120)
58 3o0z_A RHO-associated protein 68.2 89 0.0031 30.2 23.9 11 404-414 98-108 (168)
59 2l7b_A Apolipoprotein E, APO-E 65.2 32 0.0011 36.4 10.7 20 427-446 150-169 (307)
60 2ocy_A RAB guanine nucleotide 62.7 1.1E+02 0.0037 29.2 19.2 79 265-356 17-95 (154)
61 4h22_A Leucine-rich repeat fli 62.4 70 0.0024 28.5 10.5 17 356-372 67-83 (103)
62 1f5n_A Interferon-induced guan 61.5 2.3E+02 0.0078 32.6 28.1 72 589-671 511-582 (592)
63 2l7b_A Apolipoprotein E, APO-E 61.5 4.6 0.00016 42.9 3.3 20 508-527 170-189 (307)
64 1deq_A Fibrinogen (alpha chain 60.6 1.7E+02 0.0057 31.9 15.0 43 405-447 90-132 (390)
65 3u1c_A Tropomyosin alpha-1 cha 60.0 90 0.0031 27.4 16.1 7 270-276 11-17 (101)
66 1m1j_A Fibrinogen alpha subuni 59.8 1.9E+02 0.0065 32.1 15.6 44 405-448 88-131 (491)
67 3r2p_A Apolipoprotein A-I; amp 59.0 1.3E+02 0.0045 29.0 15.6 20 429-448 83-102 (185)
68 4hpq_C ATG17, KLTH0D15642P; au 56.8 2.3E+02 0.0079 31.1 38.0 23 473-495 199-221 (413)
69 4gkw_A Spindle assembly abnorm 55.0 1.3E+02 0.0045 27.8 23.7 29 407-435 102-130 (167)
70 2efr_A General control protein 54.4 1.5E+02 0.0052 28.2 24.5 30 338-367 26-55 (155)
71 2b9c_A Striated-muscle alpha t 54.0 1.5E+02 0.005 28.0 13.0 61 304-364 51-111 (147)
72 3swk_A Vimentin; cytoskeleton, 52.8 1.1E+02 0.0037 26.2 12.1 59 310-368 19-77 (86)
73 3tnu_A Keratin, type I cytoske 49.8 1.5E+02 0.0052 27.0 12.6 17 352-368 82-98 (131)
74 2jee_A YIIU; FTSZ, septum, coi 49.7 1.2E+02 0.0042 25.8 12.0 18 395-412 61-78 (81)
75 3qh9_A Liprin-beta-2; coiled-c 47.3 1.3E+02 0.0046 25.6 10.3 42 337-378 30-71 (81)
76 1wt6_A Myotonin-protein kinase 45.8 1.4E+02 0.0048 25.4 10.3 36 325-360 16-51 (81)
77 1m1j_C Fibrinogen gamma chain; 45.0 3.1E+02 0.01 30.1 14.5 32 299-330 85-116 (409)
78 3oja_A Leucine-rich immune mol 44.4 3.5E+02 0.012 29.5 16.6 8 265-272 325-332 (487)
79 2e7s_A RAB guanine nucleotide 43.0 79 0.0027 29.6 8.0 25 466-490 91-115 (135)
80 1deq_A Fibrinogen (alpha chain 42.5 3.6E+02 0.012 29.2 17.6 23 391-413 136-158 (390)
81 3efg_A Protein SLYX homolog; x 42.0 71 0.0024 27.0 7.0 47 303-349 12-58 (78)
82 3qh9_A Liprin-beta-2; coiled-c 41.7 1.6E+02 0.0056 25.0 9.8 52 319-370 26-77 (81)
83 3bas_A Myosin heavy chain, str 38.2 1.9E+02 0.0065 24.7 12.5 25 317-341 19-43 (89)
84 3tnu_B Keratin, type II cytosk 38.1 2.3E+02 0.0079 25.7 14.0 18 351-368 79-96 (129)
85 2xs1_A Programmed cell death 6 38.0 5.4E+02 0.018 29.9 29.7 39 429-467 606-644 (704)
86 2e7s_A RAB guanine nucleotide 37.4 57 0.0019 30.5 6.1 11 341-351 68-78 (135)
87 3q8t_A Beclin-1; autophagy, AT 35.9 2.2E+02 0.0075 24.8 15.0 60 297-356 31-90 (96)
88 3a7p_A Autophagy protein 16; c 35.3 3E+02 0.01 26.1 13.9 14 417-430 121-134 (152)
89 2ocy_A RAB guanine nucleotide 33.2 3.2E+02 0.011 25.9 20.1 19 336-354 16-34 (154)
90 3iox_A AGI/II, PA; alpha helix 31.9 5.9E+02 0.02 28.6 15.8 19 263-281 11-29 (497)
91 2q6q_A Spindle POLE BODY compo 30.9 2.3E+02 0.0077 23.4 7.9 11 319-329 17-27 (74)
92 3ck6_A Putative membrane trans 30.7 2.7E+02 0.0093 27.5 10.7 29 471-499 171-199 (252)
93 3nvo_A Zinc transport protein 30.6 1.8E+02 0.0062 29.0 9.3 30 470-499 186-215 (264)
94 1gs9_A Apolipoprotein E, APOE4 30.2 3.6E+02 0.012 25.6 12.9 30 493-522 70-99 (165)
95 2q12_A DIP13 alpha, DCC-intera 29.8 4.3E+02 0.015 26.3 31.5 84 474-557 161-245 (265)
96 1wle_A Seryl-tRNA synthetase; 28.4 5.9E+02 0.02 28.6 13.8 33 291-323 70-102 (501)
97 4gkw_A Spindle assembly abnorm 26.4 3.9E+02 0.013 24.7 22.4 19 260-278 10-28 (167)
98 3ghg_B Fibrinogen beta chain; 25.9 7.2E+02 0.025 27.6 14.0 39 574-612 136-174 (461)
99 1m1j_A Fibrinogen alpha subuni 25.5 7.3E+02 0.025 27.6 15.7 32 472-503 112-143 (491)
100 3a7o_A Autophagy protein 16; c 25.2 2.9E+02 0.01 22.9 8.9 23 306-328 19-41 (75)
101 2i1j_A Moesin; FERM, coiled-co 24.5 73 0.0025 36.5 5.5 20 297-316 334-353 (575)
102 1tqg_A Chemotaxis protein CHEA 24.5 3.3E+02 0.011 23.1 10.7 56 458-513 3-61 (105)
103 3ghg_B Fibrinogen beta chain; 23.8 7.8E+02 0.027 27.3 14.0 21 417-437 130-150 (461)
104 3kyj_A CHEA3, putative histidi 22.2 4.6E+02 0.016 24.1 10.7 57 457-513 8-67 (144)
105 1m1j_C Fibrinogen gamma chain; 22.1 6.2E+02 0.021 27.6 12.1 14 539-552 108-121 (409)
106 3tnu_B Keratin, type II cytosk 21.1 4.6E+02 0.016 23.6 13.3 55 509-563 55-109 (129)
107 1gs9_A Apolipoprotein E, APOE4 20.6 5.5E+02 0.019 24.3 11.6 41 625-665 119-159 (165)
108 2iub_A CORA, divalent cation t 20.4 7.6E+02 0.026 25.9 14.1 27 472-498 222-248 (363)
No 1
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=100.00 E-value=4.3e-67 Score=573.99 Aligned_cols=271 Identities=38% Similarity=0.576 Sum_probs=238.3
Q ss_pred CCCCCCCCCCCCCCCCcHHHHHHHHHHHHhhcC--CeEEEEEEEEEEEcCceeecCCCCCCCccccCCCCCCeeEEecCC
Q 004356 2 EGGARKKNGEFPSDAGVIPRAVKQIFDILEAQH--AEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALMEDGK 79 (759)
Q Consensus 2 ~G~~~~~~g~~~~~~GIIPRal~~LF~~l~~~~--~~~sV~vS~lEIYnE~v~DLL~~~~~~~~~~~~~~~~l~i~ed~~ 79 (759)
+|++++..|. +.++|||||++.+||+.+.... ..|.|+|||+|||||.|+|||+|.+. .+..+.|++|+.
T Consensus 91 SGKTyTM~G~-~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~-------~~~~l~i~e~~~ 162 (369)
T 3cob_A 91 SGKTFTIYGA-DSNPGLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQA-------KRLKLDIKKDSK 162 (369)
T ss_dssp SSHHHHHTBC-SSSBCHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEECSSCEEESSCCSSS-------CCCCCEEEECTT
T ss_pred CCCeEeecCC-CCCCchhHHHHHHHHHHHHhhccCceeEEEEEEEEEeCceeeecCCCccc-------CCcceEEEECCC
Confidence 3444445554 6889999999999999998754 48999999999999999999987541 245799999999
Q ss_pred CCeEecCcEEEEecCHHHHHHHHHhchhccccccccccCCCCCcceEEEEEEEEeecCCCCCcceEEeeeccccccCCCc
Q 004356 80 GGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSEN 159 (759)
Q Consensus 80 ~gv~V~gL~e~~V~s~~e~~~lL~~G~~~R~~~~T~~N~~SSRSH~IftI~v~~~~~~~~~~~~~~~skL~lVDLAGSEr 159 (759)
++++|.|++++.|.|++|++.+|..|..+|++++|.||..|||||+||+|+|....... .....|+|+|||||||||
T Consensus 163 ~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~---~~~~~skL~lVDLAGSEr 239 (369)
T 3cob_A 163 GMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQT---QAIARGKLSFVDLAGSER 239 (369)
T ss_dssp SCEEEETCCCEEECSHHHHHHHHHHHHHHTCCCSCCTTCHHHHSEEEEEEEEEEEETTT---CCEEEEEEEEEECCCSSC
T ss_pred CCEEccCCEEEEeCCHHHHHHHHHHHhhcceeecccCCCCCCcceEEEEEEEEEecCCC---CcEEEEEEEEEeCCCCCc
Confidence 99999999999999999999999999999999999999999999999999998765432 346789999999999999
Q ss_pred ccCCCCchhhHHHHHHhhhhHHHHHHHHHHHhhCCCCCCCCCCccccccccccCCCceeeEEeecCCCCCChHhHHHHHH
Q 004356 160 ISRSGAREGRAREAGEINKSLLTLGRVINALVEHSGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLSTLD 239 (759)
Q Consensus 160 ~~ks~a~g~r~kEa~~INkSLlaLg~VI~aL~~~~~hIPYRdSKLTrLLqdsLGGnskT~mIatVSP~~~~~eETlsTL~ 239 (759)
.+++++.|.|++||.+||+||++||+||.||+++..|||||||||||||||||||||+|+|||||||+..+++||++||+
T Consensus 240 ~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ETl~TLr 319 (369)
T 3cob_A 240 VKKSGSAGNQLKEAQSINKSLSALGDVISALSSGNQHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETHNSLT 319 (369)
T ss_dssp CCCCSSCSHHHHHHHHHTHHHHHHHHHHHHHHTTCSCCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGHHHHHHHHH
T ss_pred ccccCccchhhHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcCCHHHHHHHHhcCCCccEEEEEEeCCccccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhCCCcCCcchh
Q 004356 240 YAHRAKNIKNKPEINQKMMKSAMIKDLYSEIDRLKQEVYAAREKNGIYIPRDRY 293 (759)
Q Consensus 240 fA~rak~Ikn~p~vN~~~~~~~li~~l~~Ei~~Lk~el~~~r~k~g~~~~~~~~ 293 (759)
||.|||+|+|+|.+|..+ .||.+||.++..++++.|.+.+.+.|
T Consensus 320 fA~rak~i~~~~~~n~~~----------~ei~~L~~~l~~~~~~~~~~~~~~~~ 363 (369)
T 3cob_A 320 YASRVRSIVNDPSKNVSS----------KEVARLKKLVSYWKEQAGRKGDDEEL 363 (369)
T ss_dssp HHHHHHTCBCCCCCCEEC----------HHHHHHHHHTTCC-----------CC
T ss_pred HHHHHhhcccCCcccCCH----------HHHHHHHHHHHHHHHhcCCCCChHHH
Confidence 999999999999999975 68889999998888888887766554
No 2
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=100.00 E-value=4.2e-66 Score=565.80 Aligned_cols=260 Identities=38% Similarity=0.608 Sum_probs=213.9
Q ss_pred CCCCCCCCC--CCCCCCcHHHHHHHHHHHHhhc--CCeEEEEEEEEEEEcCceeecCCCCCCCccccCCCCCCeeEEecC
Q 004356 3 GGARKKNGE--FPSDAGVIPRAVKQIFDILEAQ--HAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALMEDG 78 (759)
Q Consensus 3 G~~~~~~g~--~~~~~GIIPRal~~LF~~l~~~--~~~~sV~vS~lEIYnE~v~DLL~~~~~~~~~~~~~~~~l~i~ed~ 78 (759)
|++++..|. .+..+|||||++++||+.+... +.+|.|+|||+|||||.|+|||++. +.++.+++|+
T Consensus 97 GKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~----------~~~l~i~e~~ 166 (365)
T 2y65_A 97 GKTHTMEGVIGDSVKQGIIPRIVNDIFNHIYAMEVNLEFHIKVSYYEIYMDKIRDLLDVS----------KVNLSVHEDK 166 (365)
T ss_dssp SHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHCCSCEEEEEEEEEEEEETTEEEETTCTT----------CCSBCEEECS
T ss_pred CCceEEecCCCCcccCChHHHHHHHHHHHHHhccCCceEEEEEEEEEEECCeeeecccCC----------cCCceEEECC
Confidence 444555553 4567899999999999999764 4589999999999999999999864 2468999999
Q ss_pred CCCeEecCcEEEEecCHHHHHHHHHhchhccccccccccCCCCCcceEEEEEEEEeecCCCCCcceEEeeeccccccCCC
Q 004356 79 KGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSE 158 (759)
Q Consensus 79 ~~gv~V~gL~e~~V~s~~e~~~lL~~G~~~R~~~~T~~N~~SSRSH~IftI~v~~~~~~~~~~~~~~~skL~lVDLAGSE 158 (759)
.++++|.|++++.|.|++|++.+|..|..+|++++|.||..|||||+||+|+|.+..... .....|+|+||||||||
T Consensus 167 ~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~---~~~~~skL~lVDLAGSE 243 (365)
T 2y65_A 167 NRVPYVKGATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLEN---QKKLSGKLYLVDLAGSE 243 (365)
T ss_dssp SSCEEETTCCCEEECSHHHHHHHHHHHHHHHTTTCSCHHHHHHTSEEEEEEEEEEEETTT---CCEEEEEEEEEECCCCC
T ss_pred CCCEEecCCEEEecCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEEEecCC---CCEeEEEEEEEECCCCC
Confidence 999999999999999999999999999999999999999999999999999998765432 23567999999999999
Q ss_pred cccCCCCchhhHHHHHHhhhhHHHHHHHHHHHhhC-CCCCCCCCCccccccccccCCCceeeEEeecCCCCCChHhHHHH
Q 004356 159 NISRSGAREGRAREAGEINKSLLTLGRVINALVEH-SGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLST 237 (759)
Q Consensus 159 r~~ks~a~g~r~kEa~~INkSLlaLg~VI~aL~~~-~~hIPYRdSKLTrLLqdsLGGnskT~mIatVSP~~~~~eETlsT 237 (759)
|.+++++.|.|++||.+||+||++||+||.||+++ ..||||||||||||||||||||++|+|||||||+..+++||++|
T Consensus 244 r~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~~~~~~ETl~T 323 (365)
T 2y65_A 244 KVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIVICCSPASFNESETKST 323 (365)
T ss_dssp C----------------CCHHHHHHHHHHHHHHHCCCSCCCGGGCHHHHHTGGGTTSSSEEEEEEEECCBGGGHHHHHHH
T ss_pred cchhcCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccCHHHHHHHhhcCCCccEEEEEEecCccCCHHHHHHH
Confidence 99999999999999999999999999999999997 57999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCccccccccccchHHHHHHHHHHHHHHHH
Q 004356 238 LDYAHRAKNIKNKPEINQKMMKSAMIKDLYSEIDRLKQ 275 (759)
Q Consensus 238 L~fA~rak~Ikn~p~vN~~~~~~~li~~l~~Ei~~Lk~ 275 (759)
|+||.|||+|+|+|.+|..+....++++|++|+++++.
T Consensus 324 L~fA~rak~I~n~~~~n~~~~~~~~~~~~~~e~~~~~~ 361 (365)
T 2y65_A 324 LDFGRRAKTVKNVVCVNEELTAEEWKRRYEKEKEKNAR 361 (365)
T ss_dssp HHHHHHHTTCEEECCCEEECCSHHHHHC----------
T ss_pred HHHHHHHhcccCcceeCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888888888888877664
No 3
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=100.00 E-value=4.9e-66 Score=564.71 Aligned_cols=235 Identities=64% Similarity=0.947 Sum_probs=203.9
Q ss_pred CCCcHHHHHHHHHHHHhhcCCeEEEEEEEEEEEcCceeecCCCCCCCccccCCCCCCeeEEecC--CCCeEecCcEEEEe
Q 004356 15 DAGVIPRAVKQIFDILEAQHAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALMEDG--KGGVFVRGLEEEIV 92 (759)
Q Consensus 15 ~~GIIPRal~~LF~~l~~~~~~~sV~vS~lEIYnE~v~DLL~~~~~~~~~~~~~~~~l~i~ed~--~~gv~V~gL~e~~V 92 (759)
.+|||||++++||+.+...+.+|.|+|||+|||||.|+|||+|... ....+.+++++ .+|++|.||+++.|
T Consensus 123 ~~Giipr~~~~lF~~i~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~-------~~~~l~i~~~~~~~~~v~v~gl~~~~v 195 (359)
T 1x88_A 123 LAGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSD-------VSERLQMFDDPRNKRGVIIKGLEEITV 195 (359)
T ss_dssp TBCHHHHHHHHHHHHTSSSSEEEEEEEEEEEEETTEEEETTCTTSC-------TTCCBEEEEETTEEEEEEEETCCCEEE
T ss_pred cCCchHHHHHHHHHHHhccCceEEEEEEEEEEeCceeeehhccccc-------ccccceEEeccCCCCCEEEcCCEEEEc
Confidence 4799999999999999887889999999999999999999987642 23468899987 47999999999999
Q ss_pred cCHHHHHHHHHhchhccccccccccCCCCCcceEEEEEEEEeecCCCCCcceEEeeeccccccCCCcccCCCCchhhHHH
Q 004356 93 TTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSENISRSGAREGRARE 172 (759)
Q Consensus 93 ~s~~e~~~lL~~G~~~R~~~~T~~N~~SSRSH~IftI~v~~~~~~~~~~~~~~~skL~lVDLAGSEr~~ks~a~g~r~kE 172 (759)
.|++|++.+|..|..+|++++|.||..|||||+||+|+|+.......+....+.|+|+|||||||||.+++++.|.|++|
T Consensus 196 ~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E 275 (359)
T 1x88_A 196 HNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRARE 275 (359)
T ss_dssp CSGGGHHHHHHHHHHHHHHHHHHSTTHHHHCEEEEEEEEEEEEECTTSCEEEEEEEEEEEECCCCCC-------------
T ss_pred CCHHHHHHHHHHHHhhcccccccCCCCCCCccEEEEEEEEEecccCCCCceEEEEEEEEEcCCCCCcccccCCcccchHH
Confidence 99999999999999999999999999999999999999998776666677778999999999999999999999999999
Q ss_pred HHHhhhhHHHHHHHHHHHhhCCCCCCCCCCccccccccccCCCceeeEEeecCCCCCChHhHHHHHHHHHHhccCccccc
Q 004356 173 AGEINKSLLTLGRVINALVEHSGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLSTLDYAHRAKNIKNKPE 252 (759)
Q Consensus 173 a~~INkSLlaLg~VI~aL~~~~~hIPYRdSKLTrLLqdsLGGnskT~mIatVSP~~~~~eETlsTL~fA~rak~Ikn~p~ 252 (759)
+++||+||++||+||.||+++..||||||||||||||||||||++|+|||||||+..+++||++||+||.|||+|+|+|.
T Consensus 276 ~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~vsP~~~~~~ETl~TLrfA~rak~I~n~p~ 355 (359)
T 1x88_A 276 AGNINQSLLTLGRVITALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPE 355 (359)
T ss_dssp --CCCHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTGGGSSSSSEEEEEEEECCCGGGHHHHHHHHHHHHHHTTCCCCCC
T ss_pred HhhhhHHHHHHHHHHHHHhcCCCCCccccchHHHHHHHHhCCCCeEEEEEEECCCcccHHHHHHHHHHHHHHhhccCcce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q 004356 253 INQK 256 (759)
Q Consensus 253 vN~~ 256 (759)
+|++
T Consensus 356 vn~~ 359 (359)
T 1x88_A 356 VNQK 359 (359)
T ss_dssp ----
T ss_pred eCCC
Confidence 9973
No 4
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=100.00 E-value=3.6e-66 Score=566.91 Aligned_cols=255 Identities=45% Similarity=0.725 Sum_probs=212.4
Q ss_pred CCCCCCCCCC--CCCCCCcHHHHHHHHHHHHhhc-CCeEEEEEEEEEEEcCceeecCCCCCCCccccCCCCCCeeEEecC
Q 004356 2 EGGARKKNGE--FPSDAGVIPRAVKQIFDILEAQ-HAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALMEDG 78 (759)
Q Consensus 2 ~G~~~~~~g~--~~~~~GIIPRal~~LF~~l~~~-~~~~sV~vS~lEIYnE~v~DLL~~~~~~~~~~~~~~~~l~i~ed~ 78 (759)
+|+++|..|. .+.++|||||++.+||..+... +.+|.|+|||+|||||.|+|||++.. .+++.|++++
T Consensus 113 SGKTyTM~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~---------~~~l~i~e~~ 183 (372)
T 3b6u_A 113 TGKTYTMEGIRGDPEKRGVIPNSFDHIFTHISRSQNQQYLVRASYLEIYQEEIRDLLSKDQ---------TKRLELKERP 183 (372)
T ss_dssp SSHHHHHTBCTTSGGGBCHHHHHHHHHHHHHHTCSSCEEEEEEEEEEEETTEEEETTSSCT---------TCCBCEEEET
T ss_pred CCCCEeEecCCCCcccCCcHHHHHHHHHHHhhhccCCceEEEEEEEEEeCCEEEECCCCCC---------CCCceEEECC
Confidence 3555555553 4567899999999999999864 56999999999999999999998653 3568999999
Q ss_pred CCCeEecCcEEEEecCHHHHHHHHHhchhccccccccccCCCCCcceEEEEEEEEeecCCCCCcceEEeeeccccccCCC
Q 004356 79 KGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSE 158 (759)
Q Consensus 79 ~~gv~V~gL~e~~V~s~~e~~~lL~~G~~~R~~~~T~~N~~SSRSH~IftI~v~~~~~~~~~~~~~~~skL~lVDLAGSE 158 (759)
.+|++|.||+++.|.|++|++.+|..|..+|++++|.||..|||||+||+|+|........+...++.|+|+||||||||
T Consensus 184 ~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~skL~lVDLAGSE 263 (372)
T 3b6u_A 184 DTGVYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLDGENHIRVGKLNLVDLAGSE 263 (372)
T ss_dssp TTEEEETTCCCEECCSHHHHHHHHHHHHHHHTTTCSSHHHHHHTSEEEEEEEEEEEC-----CCCEEEEEEEEEECCCCC
T ss_pred CCcEecCCCEEEEecCHHHHHHHHHHHHHhcCcccccCCCCCCcceEEEEEEEEEeecCCCCCcceEEEEEEEEECCCCc
Confidence 99999999999999999999999999999999999999999999999999999887655555667789999999999999
Q ss_pred cccCCCCchhhHHHHHHhhhhHHHHHHHHHHHhhCC-CCCCCCCCccccccccccCCCceeeEEeecCCCCCChHhHHHH
Q 004356 159 NISRSGAREGRAREAGEINKSLLTLGRVINALVEHS-GHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLST 237 (759)
Q Consensus 159 r~~ks~a~g~r~kEa~~INkSLlaLg~VI~aL~~~~-~hIPYRdSKLTrLLqdsLGGnskT~mIatVSP~~~~~eETlsT 237 (759)
|.+++++.|.|++|+..||+||++||+||.||+++. .||||||||||||||||||||++|+|||||||+..+++||++|
T Consensus 264 r~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~vsP~~~~~~ETlsT 343 (372)
T 3b6u_A 264 RQAKTGAQGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNAKTVMVANVGPASYNVEETLTT 343 (372)
T ss_dssp E----------EEEGGGCCHHHHHHHHHHHHHHCC---CCCGGGSHHHHHTTTTTTSSSEEEEEEEECCBGGGHHHHHHH
T ss_pred cccccCcchhhhhhHhhhhhhHHHHHHHHHHHhcCCCCCCcccccHHHHHHHHhcCCCccEEEEEEeCCcccCHHHHHHH
Confidence 999999999999999999999999999999999864 6999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCccccccccccchHHHHHHH
Q 004356 238 LDYAHRAKNIKNKPEINQKMMKSAMIKDL 266 (759)
Q Consensus 238 L~fA~rak~Ikn~p~vN~~~~~~~li~~l 266 (759)
|+||.|||+|+|+|.+|.++ +..+|++|
T Consensus 344 LrfA~rak~I~n~~~~n~~~-~~~~~~~~ 371 (372)
T 3b6u_A 344 LRYANRAKNIKNKPRVNEDP-KDALLREF 371 (372)
T ss_dssp HHHHHHHTTCBCCCCCCC-----------
T ss_pred HHHHHHHhhccccceecCCh-HHHHHHhc
Confidence 99999999999999999985 56777765
No 5
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=100.00 E-value=5.1e-65 Score=554.43 Aligned_cols=243 Identities=48% Similarity=0.716 Sum_probs=198.3
Q ss_pred CCCCCCCCCCCCCCCcHHHHHHHHHHHHhhc--CCeEEEEEEEEEEEcCceeecCCCCCCCccccCCCCCCeeEEecCCC
Q 004356 3 GGARKKNGEFPSDAGVIPRAVKQIFDILEAQ--HAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALMEDGKG 80 (759)
Q Consensus 3 G~~~~~~g~~~~~~GIIPRal~~LF~~l~~~--~~~~sV~vS~lEIYnE~v~DLL~~~~~~~~~~~~~~~~l~i~ed~~~ 80 (759)
|++++..|. +.++|||||++++||+.+... +..|.|+|||+|||||.|+|||++. +++.+++|+.+
T Consensus 102 GKTyTm~G~-~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~-----------~~l~i~e~~~~ 169 (350)
T 2vvg_A 102 GKTWTMGGN-KEEPGAIPNSFKHLFDAINSSSSNQNFLVIGSYLELYNEEIRDLIKNN-----------TKLPLKEDKTR 169 (350)
T ss_dssp SHHHHHTBC-SSSBCHHHHHHHHHHHHHHTCCTTEEEEEEEEEEEEETTEEEETTTTE-----------EEECEEEETTT
T ss_pred CCCEEeecC-CccCchHHHHHHHHHHHHHhhccCCcEEEEEEEEEEeCCEEEEcccCC-----------cCceeeEcCCC
Confidence 444444554 689999999999999999853 4589999999999999999999842 36889999999
Q ss_pred CeEecCcEEEEecCHHHHHHHHHhchhccccccccccCCCCCcceEEEEEEEEeecCCCCCcceEEeeeccccccCCCcc
Q 004356 81 GVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSENI 160 (759)
Q Consensus 81 gv~V~gL~e~~V~s~~e~~~lL~~G~~~R~~~~T~~N~~SSRSH~IftI~v~~~~~~~~~~~~~~~skL~lVDLAGSEr~ 160 (759)
|++|.||+++.|.|++|++.+|..|..+|++++|.||..|||||+||+|+|...... .+...++.|+|+|||||||||.
T Consensus 170 ~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~-~~~~~~~~skl~lVDLAGSEr~ 248 (350)
T 2vvg_A 170 GIYVDGLSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVI-ENKEVIRVGKLNLVDLAGSERQ 248 (350)
T ss_dssp EEEETTCCCEEESSHHHHHHHHHHHHHHC----------CTTCEEEEEEEEEEEEC-----CEEEEEEEEEEECCCCCC-
T ss_pred CEEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcceEEEEEEEEEeecc-CCCccEEEEEEEEEeCCCCCcc
Confidence 999999999999999999999999999999999999999999999999999876544 3345678899999999999999
Q ss_pred cCCCCchhhHHHHHHhhhhHHHHHHHHHHHhhCCCCCCCCCCccccccccccCCCceeeEEeecCCCCCChHhHHHHHHH
Q 004356 161 SRSGAREGRAREAGEINKSLLTLGRVINALVEHSGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLSTLDY 240 (759)
Q Consensus 161 ~ks~a~g~r~kEa~~INkSLlaLg~VI~aL~~~~~hIPYRdSKLTrLLqdsLGGnskT~mIatVSP~~~~~eETlsTL~f 240 (759)
+++++.|.|++||.+||+||++||+||.||+++..|||||||||||||||+||||++|+|||||||+..+++||++||+|
T Consensus 249 ~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~~~~~~ETl~TL~f 328 (350)
T 2vvg_A 249 SKTGATGETLVEGAKINLSLSALGLVISKLVEGATHIPYRDSKLTRLLQDSLGGNSKTLMCANISPASTNYDETMSTLRY 328 (350)
T ss_dssp --------------CTTHHHHHHHHHHHHHHHTCSSCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCCCccccHHHHHHHHhcCCCccEEEEEEeCCccccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCccccccccccc
Q 004356 241 AHRAKNIKNKPEINQKMM 258 (759)
Q Consensus 241 A~rak~Ikn~p~vN~~~~ 258 (759)
|.|||+|+|+|.+|.++.
T Consensus 329 A~rak~i~n~~~~n~~~~ 346 (350)
T 2vvg_A 329 ADRAKQIKNKPRINEDPK 346 (350)
T ss_dssp HHHHTTCBCCCCCCBSCT
T ss_pred HHHHhhccccceecCCch
Confidence 999999999999999863
No 6
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.4e-65 Score=562.29 Aligned_cols=259 Identities=34% Similarity=0.577 Sum_probs=189.9
Q ss_pred CCCCCCCCCCCCCCCcHHHHHHHHHHHHhhc-----CCeEEEEEEEEEEEcCceeecCCCCCCCccccCCCCCCeeEEec
Q 004356 3 GGARKKNGEFPSDAGVIPRAVKQIFDILEAQ-----HAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALMED 77 (759)
Q Consensus 3 G~~~~~~g~~~~~~GIIPRal~~LF~~l~~~-----~~~~sV~vS~lEIYnE~v~DLL~~~~~~~~~~~~~~~~l~i~ed 77 (759)
|++++..|. +.++|||||++.+||+.+... ...|.|+|||+|||||.|+|||+|.. .++.|++|
T Consensus 111 GKTyTM~G~-~~~~Giipra~~~lF~~i~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~----------~~l~ired 179 (388)
T 3bfn_A 111 GKTHTMLGS-PEQPGVIPRALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLLDPAS----------GDLVIRED 179 (388)
T ss_dssp SHHHHHTBC-SSSBCHHHHHHHHHHHHHHHHTSTTCSEEEEEEEEEEEEETTEEEESSSCSS----------CBCCCEEC
T ss_pred CCCeEeecC-ccccchhHHHHHHHHHHHHHhhccCCCceEEEEEEEEEEECCeeeehhccCC----------CCceEEEc
Confidence 444444554 788999999999999999752 34799999999999999999998643 46889999
Q ss_pred CCCCeEecCcEEEEecCHHHHHHHHHhchhccccccccccCCCCCcceEEEEEEEEeecCCCCCcceEEeeeccccccCC
Q 004356 78 GKGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGS 157 (759)
Q Consensus 78 ~~~gv~V~gL~e~~V~s~~e~~~lL~~G~~~R~~~~T~~N~~SSRSH~IftI~v~~~~~~~~~~~~~~~skL~lVDLAGS 157 (759)
+.++++|.||+++.|.|++|++.+|..|..+|++++|.||..|||||+||+|+|.+....... ....|+|+|||||||
T Consensus 180 ~~~~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~--~~~~skL~lVDLAGS 257 (388)
T 3bfn_A 180 CRGNILIPGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERLAPF--RQREGKLYLIDLAGS 257 (388)
T ss_dssp TTSCEECTTCCCEECCSHHHHHHHHHHHTC-----------CGGGSEEEEEEEEEEEESSTTC--CEEEEEEEEEECCCT
T ss_pred CCCCEEeccceEEEeCCHHHHHHHHHHHhhccccccccCCCCCCCCeEEEEEEEEEeccCCCC--ceeEEEEEEEECCCC
Confidence 999999999999999999999999999999999999999999999999999999876544322 246899999999999
Q ss_pred CcccCCCCchhhHHHHHHhhhhHHHHHHHHHHHhhCCCCCCCCCCccccccccccCCCceeeEEeecCCCCCChHhHHHH
Q 004356 158 ENISRSGAREGRAREAGEINKSLLTLGRVINALVEHSGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLST 237 (759)
Q Consensus 158 Er~~ks~a~g~r~kEa~~INkSLlaLg~VI~aL~~~~~hIPYRdSKLTrLLqdsLGGnskT~mIatVSP~~~~~eETlsT 237 (759)
||.+++++.|.|++|+++||+||++||+||.||+++.+||||||||||||||||||||++|+|||||||+..+++||++|
T Consensus 258 Er~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~hVPYRdSkLTrlLqdsLgGnskT~mIa~iSP~~~~~~ETlsT 337 (388)
T 3bfn_A 258 EDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGLPRVPYRDSKLTRLLQDSLGGSAHSILIANIAPERRFYLDTVSA 337 (388)
T ss_dssp TC--------------CCCCHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTTTSSSTTCEEEEEEEECCSGGGHHHHHHH
T ss_pred cccccccCccchhHHHhHhhhhHHHHHHHHHHHhcCCCCCcCcccHHHHHHHHhhCCCccEEEEEEECCccccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCccccccccccchHHHHHHHHHHHHHHHHHHHH
Q 004356 238 LDYAHRAKNIKNKPEINQKMMKSAMIKDLYSEIDRLKQEVYA 279 (759)
Q Consensus 238 L~fA~rak~Ikn~p~vN~~~~~~~li~~l~~Ei~~Lk~el~~ 279 (759)
|+||.|||+|+|+|.+|..+....+ .++.+++++|.+
T Consensus 338 LrfA~rak~I~n~p~~n~~~~~~~l-----~~~k~~~~~l~~ 374 (388)
T 3bfn_A 338 LNFAARSKEVINRPFTNESLQPHAL-----GPVKLSQKELLG 374 (388)
T ss_dssp HHHHCSEEEEC-------------------------------
T ss_pred HHHHHHHhhCcCcCcccCCCCHHHH-----HHHHHHHHHhhC
Confidence 9999999999999999998755433 234455555543
No 7
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=100.00 E-value=2.1e-65 Score=562.05 Aligned_cols=237 Identities=60% Similarity=0.943 Sum_probs=203.5
Q ss_pred CCCCCcHHHHHHHHHHHHhhcCCeEEEEEEEEEEEcCceeecCCCCCCCccccCCCCCCeeEEec--CCCCeEecCcEEE
Q 004356 13 PSDAGVIPRAVKQIFDILEAQHAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALMED--GKGGVFVRGLEEE 90 (759)
Q Consensus 13 ~~~~GIIPRal~~LF~~l~~~~~~~sV~vS~lEIYnE~v~DLL~~~~~~~~~~~~~~~~l~i~ed--~~~gv~V~gL~e~ 90 (759)
+.++|||||++++||+.+...+.+|.|+|||+|||||.|+|||++.. ...+.+++| +.++++|.||+++
T Consensus 133 ~~~~Giipr~~~~lF~~i~~~~~~~~v~vS~~EIYnE~i~DLL~~~~---------~~~l~i~~~~~~~g~v~v~gl~~~ 203 (373)
T 2wbe_C 133 DSDIGIIPRALSHLFDELRMMEVEYTMRISYLELYNEELCDLLSTDD---------TTKIRIFDDSTKKGSVIIQGLEEI 203 (373)
T ss_dssp TTTBCHHHHHHHHHHHHHHHCCSCEEEEEEEEEEETTEEEESSCTTS---------CSCCCEEECSSSSSCEEETTCCCE
T ss_pred cCCCcChHHHHHHHHHHHHhcCceEEEEEEEEEEeCCeEEECCCCCC---------CCCceeEeccCCCCcEEecCceEE
Confidence 35789999999999999998888999999999999999999998653 235778887 4678999999999
Q ss_pred EecCHHHHHHHHHhchhccccccccccCCCCCcceEEEEEEEEeecCCCCCcceEEeeeccccccCCCcccCCCCc-hhh
Q 004356 91 IVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSENISRSGAR-EGR 169 (759)
Q Consensus 91 ~V~s~~e~~~lL~~G~~~R~~~~T~~N~~SSRSH~IftI~v~~~~~~~~~~~~~~~skL~lVDLAGSEr~~ks~a~-g~r 169 (759)
.|.|++|++.+|..|..+|++++|.||..|||||+||+|+|+.......+....+.|+|+|||||||||.+++++. |.|
T Consensus 204 ~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~~g~r 283 (373)
T 2wbe_C 204 PVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIRENGIEGEDMLKIGKLNLVDLAGSENVSKAGNEKGIR 283 (373)
T ss_dssp EESSHHHHHHHHHHHHHHHTTTCSCHHHHHHHSEEEEEEEEEECTTCTTTCCEEEEEEEEEEECCCC-------------
T ss_pred ccCCHHHHHHHHHHHhhhhccccccCCCCCCCccEEEEEEEEEecCCCCCCcceeEEEEEEEECCCCCccccccCccccc
Confidence 9999999999999999999999999999999999999999988765555666778999999999999999999998 999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHhhCCCCCCCCCCccccccccccCCCceeeEEeecCCCCCChHhHHHHHHHHHHhccCcc
Q 004356 170 AREAGEINKSLLTLGRVINALVEHSGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLSTLDYAHRAKNIKN 249 (759)
Q Consensus 170 ~kEa~~INkSLlaLg~VI~aL~~~~~hIPYRdSKLTrLLqdsLGGnskT~mIatVSP~~~~~eETlsTL~fA~rak~Ikn 249 (759)
++|+.+||+||++||+||.||+++..|||||||||||||||+|||||+|+|||||||+..+++||++||+||.|||+|+|
T Consensus 284 l~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ETlsTLrfA~rak~I~n 363 (373)
T 2wbe_C 284 VRETVNINQSLLTLGRVITALVDRAPHVPYRESKLTRLLQESLGGRTKTSIIATISPGHKDIEETLSTLEYAHRAKNIQN 363 (373)
T ss_dssp -------CHHHHHHHHHHHHHHHCSSCCCGGGCHHHHHTHHHHHSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCEE
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCCcCccccchHHHHHHHHhCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccc
Q 004356 250 KPEINQKMM 258 (759)
Q Consensus 250 ~p~vN~~~~ 258 (759)
+|.+|+..+
T Consensus 364 ~p~vN~~~s 372 (373)
T 2wbe_C 364 KPEVNQKLT 372 (373)
T ss_dssp CCCCCEECC
T ss_pred cceeccccC
Confidence 999999764
No 8
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=100.00 E-value=2.6e-64 Score=563.67 Aligned_cols=255 Identities=40% Similarity=0.591 Sum_probs=204.4
Q ss_pred CCCCCCCCCCCCCCCCcHHHHHHHHHHHHhhc-----CCeEEEEEEEEEEEcCceeecCCCCCCCccccCCCCCCeeEEe
Q 004356 2 EGGARKKNGEFPSDAGVIPRAVKQIFDILEAQ-----HAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALME 76 (759)
Q Consensus 2 ~G~~~~~~g~~~~~~GIIPRal~~LF~~l~~~-----~~~~sV~vS~lEIYnE~v~DLL~~~~~~~~~~~~~~~~l~i~e 76 (759)
+|+++|+.|. +.++|||||++++||+.+... +..|.|+|||+|||||.|+|||+|... ...+..+.|++
T Consensus 148 SGKTyTM~G~-~~~~GIipr~~~~lF~~i~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~~-----~~~~~~l~ire 221 (443)
T 2owm_A 148 SGKSYTMMGT-PDQPGLIPRTCEDLFQRIASAQDETPNISYNVKVSYFEVYNEHVRDLLAPVVP-----NKPPYYLKVRE 221 (443)
T ss_dssp SSHHHHHTCC-TTSCCHHHHHHHHHHHHHHHTTTTSTTCEEEEEEEEEEEETTEEEETTSCCCS-----SCCCCCCEEEE
T ss_pred CCCCEEeecC-CCCCchHHHHHHHHHHHHHhhhcccCCceEEEEEEEEEEECCEeeEccCcccc-----CCcccccceeE
Confidence 3555555664 678999999999999999753 458999999999999999999987431 12245799999
Q ss_pred cCCCCeEecCcEEEEecCHHHHHHHHHhchhccccccccccCCCCCcceEEEEEEEEeecCC-CCCcceEEeeecccccc
Q 004356 77 DGKGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTP-EGEEMIKCGKLNLVDLA 155 (759)
Q Consensus 77 d~~~gv~V~gL~e~~V~s~~e~~~lL~~G~~~R~~~~T~~N~~SSRSH~IftI~v~~~~~~~-~~~~~~~~skL~lVDLA 155 (759)
|+.+|+||.||+++.|.|++|++.+|..|..+|++++|.||..|||||+||+|+|.+..... .+....+.|+|+|||||
T Consensus 222 ~~~~g~~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~~~~~~~~~~~~~skL~lVDLA 301 (443)
T 2owm_A 222 SPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAVFTIMLKQIHHDLETDDTTERSSRIRLVDLA 301 (443)
T ss_dssp ETTTEEEEETCCCEECCSHHHHHHHHHHHHTTSCBCSSSSSCBCTTEEEEEEEEEEEEC-------CCEEEEEEEEEECC
T ss_pred CCCCCEeccCCEEEEcCCHHHHHHHHHHHHhhCCcccCcCCCccCCCeEEEEEEEEEeecccCCCCcceEEEEEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999998754332 22345678999999999
Q ss_pred CCCcccCCCCchhhHHHHHHhhhhHHHHHHHHHHHhhCC----------------------CCCCCCCCccccccccccC
Q 004356 156 GSENISRSGAREGRAREAGEINKSLLTLGRVINALVEHS----------------------GHVPYRDSKLTRLLRDSLG 213 (759)
Q Consensus 156 GSEr~~ks~a~g~r~kEa~~INkSLlaLg~VI~aL~~~~----------------------~hIPYRdSKLTrLLqdsLG 213 (759)
||||.+++++.|.|++||.+||+||++||+||.||+++. .|||||||||||||||+||
T Consensus 302 GSER~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~~~~g~~~~~~~~~~hVPYRdSkLTrLLqdsLg 381 (443)
T 2owm_A 302 GSERAKSTEATGQRLREGSNINKSLTTLGRVIAALADPKSSASRPSSPVKSGRGRTPGPANSVVPYRDSVLTWLLKDSLG 381 (443)
T ss_dssp CCCC--------------CCSSHHHHHHHHHHHHHCC-------------------------CCCGGGSHHHHHSTTTTT
T ss_pred CCccccccCCccccccchhhhcHHHHHHHHHHHHHhcccccccccccccccccccccccCCCcccCcccHhHHHHHHhhC
Confidence 999999999999999999999999999999999998743 3899999999999999999
Q ss_pred CCceeeEEeecCCCCCChHhHHHHHHHHHHhccCccccccccccchHHHHH
Q 004356 214 GKTKTCIIATVSPSIHCLEETLSTLDYAHRAKNIKNKPEINQKMMKSAMIK 264 (759)
Q Consensus 214 GnskT~mIatVSP~~~~~eETlsTL~fA~rak~Ikn~p~vN~~~~~~~li~ 264 (759)
||++|+|||||||+ +++||++||+||.|||+|+|+|.+|+....+..++
T Consensus 382 GnskT~mIa~iSP~--~~~ETlsTLrfA~rak~I~n~~~vN~~d~~~~~~~ 430 (443)
T 2owm_A 382 GNSKTAMIACISPT--DYDETLSTLRYADQAKRIRTRAVVNQVDGVSAAER 430 (443)
T ss_dssp SSCEEEEEEEECSS--CHHHHHHHHHHHHHHTTCEECCCCCCC--------
T ss_pred CCCcEEEEEEeccc--cHHHHHHHHHHHHHHhhccccceecccCCccHHHH
Confidence 99999999999997 59999999999999999999999999433444433
No 9
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=100.00 E-value=2.2e-64 Score=549.45 Aligned_cols=246 Identities=41% Similarity=0.657 Sum_probs=214.9
Q ss_pred CCCCCCCCCCCCCCCCcHHHHHHHHHHHHhhc-CCeEEEEEEEEEEEcCceeecCCCCCCCccccCCCCCCeeEEecCCC
Q 004356 2 EGGARKKNGEFPSDAGVIPRAVKQIFDILEAQ-HAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALMEDGKG 80 (759)
Q Consensus 2 ~G~~~~~~g~~~~~~GIIPRal~~LF~~l~~~-~~~~sV~vS~lEIYnE~v~DLL~~~~~~~~~~~~~~~~l~i~ed~~~ 80 (759)
+|++++..|. +.++|||||++++||+.++.. +.+|.|+|||+|||||.|+|||++.. ..+++.|++|+.+
T Consensus 89 SGKTyTM~G~-~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~--------~~~~l~i~ed~~~ 159 (349)
T 1t5c_A 89 SGKTYTMMGS-EDHLGVIPRAIHDIFQKIKKFPDREFLLRVSYMEIYNETITDLLCGTQ--------KMKPLIIREDVNR 159 (349)
T ss_dssp SSHHHHHTBC-SSSBCHHHHHHHHHHHHGGGCTTEEEEEEEEEEEEETTEEEESSSSSC--------TTCCEEEEETTTT
T ss_pred CCCCeEEecC-CCCCchHHHHHHHHHHHHHhCcCCcEEEEEEEEEEeCCEEEEccCCCC--------CCCCceEEECCCC
Confidence 3444455554 678999999999999999875 45899999999999999999998653 2457999999999
Q ss_pred CeEecCcEEEEecCHHHHHHHHHhchhccccccccccCCCCCcceEEEEEEEEeecCCC--CCcceEEeeeccccccCCC
Q 004356 81 GVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPE--GEEMIKCGKLNLVDLAGSE 158 (759)
Q Consensus 81 gv~V~gL~e~~V~s~~e~~~lL~~G~~~R~~~~T~~N~~SSRSH~IftI~v~~~~~~~~--~~~~~~~skL~lVDLAGSE 158 (759)
|++|.||+++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|........ .....+.|+|+||||||||
T Consensus 160 ~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~~~skL~lVDLAGSE 239 (349)
T 1t5c_A 160 NVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVKVSHLNLVDLAGSE 239 (349)
T ss_dssp EEEETTCCCEECSSHHHHHHHHHHHHHTTSSSSSSSSCTTTTCEEEEEEEEEEEECC-------CEEEEEEEEEECCCGG
T ss_pred CEEecCCEEEEeCCHHHHHHHHHHhhcccccccccCCCCCCCceEEEEEEEEEeccCCCcCcCccEEEEEEEEEECCCCc
Confidence 99999999999999999999999999999999999999999999999999987654332 1234678999999999999
Q ss_pred cccCCCCchhhHHHHHHhhhhHHHHHHHHHHHhhCC--CCCCCCCCccccccccccCCCceeeEEeecCCCCCChHhHHH
Q 004356 159 NISRSGAREGRAREAGEINKSLLTLGRVINALVEHS--GHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLS 236 (759)
Q Consensus 159 r~~ks~a~g~r~kEa~~INkSLlaLg~VI~aL~~~~--~hIPYRdSKLTrLLqdsLGGnskT~mIatVSP~~~~~eETls 236 (759)
|.+++++.|.|++||.+||+||++||+||.+|+++. .||||||||||||||||||||++|+|||||||+ +++||++
T Consensus 240 r~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~--~~~ETls 317 (349)
T 1t5c_A 240 RAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYRDSKLTRILQNSLGGNAKTRIICTITPV--SFDETLT 317 (349)
T ss_dssp GTC-------CCCSSSCCCHHHHHHHHHHHHHHHTCCTTSSCGGGSHHHHHTGGGTTSSSEEEEEEEECTT--CSHHHHH
T ss_pred cccccCCccccchhhhHHhHHHHHHHHHHHHHhccCCCCCCcccccHHHHHHHHhcCCCceEEEEEEeCCC--CHHHHHH
Confidence 999999999999999999999999999999999875 699999999999999999999999999999997 5999999
Q ss_pred HHHHHHHhccCccccccccccc
Q 004356 237 TLDYAHRAKNIKNKPEINQKMM 258 (759)
Q Consensus 237 TL~fA~rak~Ikn~p~vN~~~~ 258 (759)
||+||.|||+|+|+|.+|..+.
T Consensus 318 TL~fA~rak~I~n~~~vn~~~~ 339 (349)
T 1t5c_A 318 ALQFASTAKYMKNTPYVNEVST 339 (349)
T ss_dssp HHHHHHHHTTCCCCCCCCEEC-
T ss_pred HHHHHHHHhhcccCceeccCCC
Confidence 9999999999999999999863
No 10
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=100.00 E-value=3.5e-64 Score=549.08 Aligned_cols=246 Identities=46% Similarity=0.700 Sum_probs=224.8
Q ss_pred CCCCCCCCCC---CCCCCCcHHHHHHHHHHHHhhc--CCeEEEEEEEEEEEcCceeecCCCCCCCccccCCCCCCeeEEe
Q 004356 2 EGGARKKNGE---FPSDAGVIPRAVKQIFDILEAQ--HAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALME 76 (759)
Q Consensus 2 ~G~~~~~~g~---~~~~~GIIPRal~~LF~~l~~~--~~~~sV~vS~lEIYnE~v~DLL~~~~~~~~~~~~~~~~l~i~e 76 (759)
+|++++..|. .+.++|||||++++||+.+... +.+|.|+|||+|||||.|+|||+|.. ..+.+++
T Consensus 92 SGKTyTm~G~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~----------~~l~i~e 161 (355)
T 1goj_A 92 AGKSYTMMGTSIDDPDGRGVIPRIVEQIFTSILSSAANIEYTVRVSYMEIYMERIRDLLAPQN----------DNLPVHE 161 (355)
T ss_dssp SSHHHHHTBSCTTSTTTBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEETTSTTC----------CSCCEEE
T ss_pred CCcceEeecCCCCCcccCCchHHHHHHHHHHHHhcccCceEEEEEEEEEEECCEEEEcccCcc----------CCceeEE
Confidence 3455555553 3678999999999999999764 34899999999999999999998643 4688999
Q ss_pred cCCCCeEecCcEEEEecCHHHHHHHHHhchhccccccccccCCCCCcceEEEEEEEEeecCCCCCcceEEeeeccccccC
Q 004356 77 DGKGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAG 156 (759)
Q Consensus 77 d~~~gv~V~gL~e~~V~s~~e~~~lL~~G~~~R~~~~T~~N~~SSRSH~IftI~v~~~~~~~~~~~~~~~skL~lVDLAG 156 (759)
++.+|++|.||+++.|.|++|++.+|..|..+|++++|.||..|||||+||+|+|.+..... ...+.|+|+||||||
T Consensus 162 ~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~---~~~~~skL~lVDLAG 238 (355)
T 1goj_A 162 EKNRGVYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVET---GSAKSGQLFLVDLAG 238 (355)
T ss_dssp ETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEEEEEEEEEETTT---TEEEEEEEEEEECCC
T ss_pred cCCCCEeecCCEEEeCCCHHHHHHHHHHHHhhcCcccccCCCCCCCceEEEEEEEEEeccCC---CceeeeEEEEEECCC
Confidence 99999999999999999999999999999999999999999999999999999998765432 245789999999999
Q ss_pred CCcccCCCCchhhHHHHHHhhhhHHHHHHHHHHHhhC-CCCCCCCCCccccccccccCCCceeeEEeecCCCCCChHhHH
Q 004356 157 SENISRSGAREGRAREAGEINKSLLTLGRVINALVEH-SGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETL 235 (759)
Q Consensus 157 SEr~~ks~a~g~r~kEa~~INkSLlaLg~VI~aL~~~-~~hIPYRdSKLTrLLqdsLGGnskT~mIatVSP~~~~~eETl 235 (759)
|||.+++++.|.|++|+.+||+||++||+||.||+++ ..|||||||||||||||+||||++|+|||||||+..+++||+
T Consensus 239 SEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGns~t~mI~~isP~~~~~~ETl 318 (355)
T 1goj_A 239 SEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLTRILQESLGGNSRTTLIINCSPSSYNDAETL 318 (355)
T ss_dssp CSCCTTSSSCCCCTTTTGGGTSHHHHHHHHHHHHHHCSCSCCCGGGCHHHHHTGGGTTSSCEEEEEEEECCBGGGHHHHH
T ss_pred CCcccccccchhhHHHHHhhhhHHHHHHHHHHHHhcCCCCCCCCccCHHHHHHHHHhCCCCcEEEEEEECcccccHHHHH
Confidence 9999999999999999999999999999999999986 579999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCccccccccccchH
Q 004356 236 STLDYAHRAKNIKNKPEINQKMMKS 260 (759)
Q Consensus 236 sTL~fA~rak~Ikn~p~vN~~~~~~ 260 (759)
+||+||.|||+|+|+|.+|..+...
T Consensus 319 ~TL~fA~rak~I~n~~~vn~~~~~~ 343 (355)
T 1goj_A 319 STLRFGMRAKSIKNKAKVNAELSPA 343 (355)
T ss_dssp HHHHHHHHHHTCBCCCCCCSSSSCS
T ss_pred HHHHHHHHHhhccCCceeCCCCCHH
Confidence 9999999999999999999986543
No 11
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=100.00 E-value=4.9e-64 Score=550.19 Aligned_cols=245 Identities=39% Similarity=0.613 Sum_probs=205.1
Q ss_pred CCCCCCCCCCC-CCCCCcHHHHHHHHHHHHhhc---CCeEEEEEEEEEEEcCceeecCCCCCCCccccCCCCCCeeEEec
Q 004356 2 EGGARKKNGEF-PSDAGVIPRAVKQIFDILEAQ---HAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALMED 77 (759)
Q Consensus 2 ~G~~~~~~g~~-~~~~GIIPRal~~LF~~l~~~---~~~~sV~vS~lEIYnE~v~DLL~~~~~~~~~~~~~~~~l~i~ed 77 (759)
+|++++..|.. +.++|||||++++||..+... +..|.|+|||+|||||.|+|||+|.. +..+.|+++
T Consensus 101 SGKTyTm~G~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~---------~~~l~ire~ 171 (366)
T 2zfi_A 101 AGKSYTMMGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKN---------KGNLRVREH 171 (366)
T ss_dssp SSHHHHHTBCSGGGCBCHHHHHHHHHHHHHHTCCCTTEEEEEEEEEEEEETTEEEETTCTTT---------CSCBCEEEE
T ss_pred CCCceEeeCCCccCCCccHHHHHHHHHHHHhhcccCCeeEEEEEEEEEeeCCeEEEcccccc---------CCCceEEEc
Confidence 35555556653 467999999999999999764 34899999999999999999998753 346899999
Q ss_pred CCCCeEecCcEEEEecCHHHHHHHHHhchhccccccccccCCCCCcceEEEEEEEEeecCCCC-CcceEEeeeccccccC
Q 004356 78 GKGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEG-EEMIKCGKLNLVDLAG 156 (759)
Q Consensus 78 ~~~gv~V~gL~e~~V~s~~e~~~lL~~G~~~R~~~~T~~N~~SSRSH~IftI~v~~~~~~~~~-~~~~~~skL~lVDLAG 156 (759)
+.+|++|.||+++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|.+....... ....+.|+|+||||||
T Consensus 172 ~~~g~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~~skL~lVDLAG 251 (366)
T 2zfi_A 172 PLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVSKISLVDLAG 251 (366)
T ss_dssp TTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTSGGGGTTTHHHHSEEEEEEEEEEEEECTTTTCEEEEEEEEEEEECCC
T ss_pred CCCCEEEeCCEEEEECCHHHHHHHHHHHhhccccccccCCCCCCcceEEEEEEEEEecccCCCCccceeEeEEEEEeCCC
Confidence 999999999999999999999999999999999999999999999999999999876544332 2345789999999999
Q ss_pred CCcccCCCCchhhHHHHHHhhhhHHHHHHHHHHHhhC------------CCCCCCCCCccccccccccCCCceeeEEeec
Q 004356 157 SENISRSGAREGRAREAGEINKSLLTLGRVINALVEH------------SGHVPYRDSKLTRLLRDSLGGKTKTCIIATV 224 (759)
Q Consensus 157 SEr~~ks~a~g~r~kEa~~INkSLlaLg~VI~aL~~~------------~~hIPYRdSKLTrLLqdsLGGnskT~mIatV 224 (759)
|||.+++++.|.|++||.+||+||++||+||.||+++ ..|||||||||||||||+||||++|+|||||
T Consensus 252 SEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~i 331 (366)
T 2zfi_A 252 SERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAAL 331 (366)
T ss_dssp GGGC------CCCHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCGGGSHHHHHTGGGSSTTCEEEEEEEE
T ss_pred CccccccCCCccchhhhhhHhHHHHHHHHHHHHHHhcccccccccccccCCcccccccHHHHHHHHHhCCCceEEEEEEe
Confidence 9999999999999999999999999999999999973 4699999999999999999999999999999
Q ss_pred CCCCCChHhHHHHHHHHHHhccCcccccccc
Q 004356 225 SPSIHCLEETLSTLDYAHRAKNIKNKPEINQ 255 (759)
Q Consensus 225 SP~~~~~eETlsTL~fA~rak~Ikn~p~vN~ 255 (759)
||+..+++||++||+||.|||+|+|+|.++.
T Consensus 332 sP~~~~~~ETlsTLrfA~rak~I~~~~~~~~ 362 (366)
T 2zfi_A 332 SPADINYDETLSTLRYADRAKQIRNTVSVNH 362 (366)
T ss_dssp CCBGGGHHHHHHHHHHHHHTC----------
T ss_pred CCCcccHHHHHHHHHHHHHHhhccCCCCCCC
Confidence 9999999999999999999999999999875
No 12
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=7.6e-63 Score=538.76 Aligned_cols=233 Identities=42% Similarity=0.645 Sum_probs=187.9
Q ss_pred CCCCCCCCCCCCCCCcHHHHHHHHHHHHhhc--CCeEEEEEEEEEEEcCceeecCCCCCCCccccCCCCCCeeEEecCCC
Q 004356 3 GGARKKNGEFPSDAGVIPRAVKQIFDILEAQ--HAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALMEDGKG 80 (759)
Q Consensus 3 G~~~~~~g~~~~~~GIIPRal~~LF~~l~~~--~~~~sV~vS~lEIYnE~v~DLL~~~~~~~~~~~~~~~~l~i~ed~~~ 80 (759)
|++++..| .+.++|||||++.+||..++.. ...|.|+|||+|||||.|+|||++. +++.+++|+.+
T Consensus 118 GKTyTm~G-~~~~~Giipr~~~~lf~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~-----------~~l~ire~~~~ 185 (355)
T 3lre_A 118 GKTHTMLG-SADEPGVMYLTMLHLYKCMDEIKEEKICSTAVSYLEVYNEQIRDLLVNS-----------GPLAVREDTQK 185 (355)
T ss_dssp SHHHHHTB-CSSSBCHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEEETTEEEESSSCC-----------CCBEEEECTTS
T ss_pred Cceeeecc-CCCCCCeeehhhhHHHHhhhhhccCceEEEEEEEEEEECCEEEECcCCC-----------CCceeEEcCCC
Confidence 44444455 4778999999999999999864 3489999999999999999999753 36999999999
Q ss_pred CeEecCcEEEEecCHHHHHHHHHhchhccccccccccCCCCCcceEEEEEEEEeecCCCCCcceEEeeeccccccCCCcc
Q 004356 81 GVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSENI 160 (759)
Q Consensus 81 gv~V~gL~e~~V~s~~e~~~lL~~G~~~R~~~~T~~N~~SSRSH~IftI~v~~~~~~~~~~~~~~~skL~lVDLAGSEr~ 160 (759)
|++|.||+++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|.+..........++.|+|+|||||||||.
T Consensus 186 ~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~skl~lVDLAGSEr~ 265 (355)
T 3lre_A 186 GVVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYLRQQDKTASINQNVRIAKMSLIDLAGSERA 265 (355)
T ss_dssp CEEEETCCCBCCCSHHHHHHHHHHHHHTSCBC-----CBCTTCEEEEEEEEEEEETTSCTTCCCCCEEEEEEECCCCCC-
T ss_pred CEEeeeeeEEecCCHHHHHHHHHHHHhcCCcccccCcCCCCCCcEEEEEEEEEecCCCCCCCCEEEEEEEEEECCCCCcC
Confidence 99999999999999999999999999999999999999999999999999998766555455567899999999999999
Q ss_pred cCCCCchhhHHHHHHhhhhHHHHHHHHHHHhhC---CCCCCCCCCccccccccccCCCceeeEEeecCCCCCChHhHHHH
Q 004356 161 SRSGAREGRAREAGEINKSLLTLGRVINALVEH---SGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLST 237 (759)
Q Consensus 161 ~ks~a~g~r~kEa~~INkSLlaLg~VI~aL~~~---~~hIPYRdSKLTrLLqdsLGGnskT~mIatVSP~~~~~eETlsT 237 (759)
+++++.|.|++||.+||+||++||+||.||+++ ..|||||||||||||||||||||+|+|||||||+..+++||++|
T Consensus 266 ~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lL~dsLgGnskt~mIa~isP~~~~~~ETl~T 345 (355)
T 3lre_A 266 STSGAKGTRFVEGTNINRSLLALGNVINALADSKRKNQHIPYRNSKLTRLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNT 345 (355)
T ss_dssp ----------------CHHHHHHHHHHHHHC--------CCGGGSHHHHHTTTTSSTTSEEEEEEEECCBGGGHHHHHHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCCcccCHHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHH
Confidence 999999999999999999999999999999985 35999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccC
Q 004356 238 LDYAHRAKNI 247 (759)
Q Consensus 238 L~fA~rak~I 247 (759)
|+||.|||+|
T Consensus 346 L~fA~rak~I 355 (355)
T 3lre_A 346 LKYANRAKDI 355 (355)
T ss_dssp HHHHHHTC--
T ss_pred HHHHHHhccC
Confidence 9999999987
No 13
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=100.00 E-value=3.2e-62 Score=529.09 Aligned_cols=235 Identities=43% Similarity=0.653 Sum_probs=205.2
Q ss_pred CCCCCCCCCCCCCCCcHHHHHHHHHHHHhhc--CCeEEEEEEEEEEEcCceeecCCCCCCCccccCCCCCCeeEEecCCC
Q 004356 3 GGARKKNGEFPSDAGVIPRAVKQIFDILEAQ--HAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALMEDGKG 80 (759)
Q Consensus 3 G~~~~~~g~~~~~~GIIPRal~~LF~~l~~~--~~~~sV~vS~lEIYnE~v~DLL~~~~~~~~~~~~~~~~l~i~ed~~~ 80 (759)
|++++..| .+.++|||||++++||..++.. +..|.|+|||+|||||.|+|||++.+. .+-.+++.+|+.+
T Consensus 93 GKTyTm~G-~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~-------~~l~i~~~~~~~~ 164 (330)
T 2h58_A 93 GKTYTMEG-TAENPGINQRALQLLFSEVQEKASDWEYTITVSAAEIYNEVLRDLLGKEPQ-------EKLEIRLCPDGSG 164 (330)
T ss_dssp SHHHHHTB-CSSSBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEETTSCSSC-------CCCCCEECTTSSC
T ss_pred CCcEEEec-CCCCCcHHHHHHHHHHHhhhcccCCceEEEEEEEEEEECCChhhccccccc-------ccceEEEeecCCC
Confidence 44444455 4788999999999999999864 348999999999999999999986531 1234566678999
Q ss_pred CeEecCcEEEEecCHHHHHHHHHhchhccccccccccCCCCCcceEEEEEEEEeecCCCCCcceEEeeeccccccCCCcc
Q 004356 81 GVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSENI 160 (759)
Q Consensus 81 gv~V~gL~e~~V~s~~e~~~lL~~G~~~R~~~~T~~N~~SSRSH~IftI~v~~~~~~~~~~~~~~~skL~lVDLAGSEr~ 160 (759)
+++|.||+++.|.|++|++.+|..|..+|++++|.||..|||||+||+|+|...... ......|+|+|||||||||.
T Consensus 165 ~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~---~~~~~~skL~lVDLAGSEr~ 241 (330)
T 2h58_A 165 QLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCS---TGLRTTGKLNLVDLAGSERV 241 (330)
T ss_dssp CEECTTCCCEEECSHHHHHHHHHHHHHHTTCTTCCSCSCGGGSEEEEEEEEEEEETT---TTEEEEEEEEEEECCCCCCC
T ss_pred CEecCCCEEEEeCCHHHHHHHHHHHHhhCCcccccCCCCcCCccEEEEEEEEEEecC---CCcEEEEEEEEEeCCCCCcc
Confidence 999999999999999999999999999999999999999999999999999876533 23457899999999999999
Q ss_pred cCCCCchhhHHHHHHhhhhHHHHHHHHHHHhhCCCCCCCCCCccccccccccCCCceeeEEeecCCCCCChHhHHHHHHH
Q 004356 161 SRSGAREGRAREAGEINKSLLTLGRVINALVEHSGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLSTLDY 240 (759)
Q Consensus 161 ~ks~a~g~r~kEa~~INkSLlaLg~VI~aL~~~~~hIPYRdSKLTrLLqdsLGGnskT~mIatVSP~~~~~eETlsTL~f 240 (759)
+++++.|.|++|+.+||+||++||+||.||+++..|||||||||||||||+||||++|+|||||||+..+++||++||+|
T Consensus 242 ~~t~~~g~r~~E~~~IN~SL~aLg~vI~aL~~~~~hvPyRdSkLT~lL~dsLgGns~t~mI~~isP~~~~~~ETl~TL~f 321 (330)
T 2h58_A 242 GKSGAEGSRLREAQHINKSLSALGDVIAALRSRQGHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKF 321 (330)
T ss_dssp C------HHHHHHHHHHHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTHHHHSTTCEEEEEEEECCBGGGHHHHHHHHHH
T ss_pred cccCCchhhhHHHHHhhHhHHHHHHHHHHHhcCCCCCcccccHHHHHHHHHhCCCceEEEEEEeCCccccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCc
Q 004356 241 AHRAKNIK 248 (759)
Q Consensus 241 A~rak~Ik 248 (759)
|.|||+|+
T Consensus 322 A~rak~i~ 329 (330)
T 2h58_A 322 AERVRSVE 329 (330)
T ss_dssp HHHHC---
T ss_pred HHHHhhCc
Confidence 99999986
No 14
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=100.00 E-value=1e-62 Score=531.90 Aligned_cols=233 Identities=43% Similarity=0.656 Sum_probs=214.0
Q ss_pred CCCCCCCCCC--CCCCCCcHHHHHHHHHHHHhhc--CCeEEEEEEEEEEEcCceeecCCCCCCCccccCCCCCCeeEEec
Q 004356 2 EGGARKKNGE--FPSDAGVIPRAVKQIFDILEAQ--HAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALMED 77 (759)
Q Consensus 2 ~G~~~~~~g~--~~~~~GIIPRal~~LF~~l~~~--~~~~sV~vS~lEIYnE~v~DLL~~~~~~~~~~~~~~~~l~i~ed 77 (759)
+|++++..|. .|..+|||||++++||+.+... +.+|.|+|||+|||||.|+|||++. +.++.+++|
T Consensus 89 SGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~----------~~~l~i~e~ 158 (325)
T 1bg2_A 89 SGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVS----------KTNLSVHED 158 (325)
T ss_dssp SSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHHCSSEEEEEEEEEEEEETTEEEESSCTT----------CCSBCEEEC
T ss_pred CCCceEecccCCCcccCccHHHHHHHHHHHHHhccCCceEEEEEEEEEEecCeeeecccCC----------CCCceEEEC
Confidence 3455555653 4567899999999999999753 4589999999999999999999864 246899999
Q ss_pred CCCCeEecCcEEEEecCHHHHHHHHHhchhccccccccccCCCCCcceEEEEEEEEeecCCCCCcceEEeeeccccccCC
Q 004356 78 GKGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGS 157 (759)
Q Consensus 78 ~~~gv~V~gL~e~~V~s~~e~~~lL~~G~~~R~~~~T~~N~~SSRSH~IftI~v~~~~~~~~~~~~~~~skL~lVDLAGS 157 (759)
+.++++|.|++++.|.|++|++.+|..|..+|++++|.||..|||||+||+|+|.+..... .....|+|+|||||||
T Consensus 159 ~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~---~~~~~skl~lVDLAGS 235 (325)
T 1bg2_A 159 KNRVPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQT---EQKLSGKLYLVDLAGS 235 (325)
T ss_dssp TTSCEEETTCCCEEECSHHHHHHHHHHHHHHTTTTCSCHHHHHHHSEEEEEEEEEEEETTT---CCEEEEEEEEEECCCS
T ss_pred CCCCEEecCceEEeCCCHHHHHHHHHHHHhhCceeecCCCCCCCCCeEEEEEEEEEEecCC---CcEEEEEEEEEECCCC
Confidence 9999999999999999999999999999999999999999999999999999998765432 2356899999999999
Q ss_pred CcccCCCCchhhHHHHHHhhhhHHHHHHHHHHHhhCCCCCCCCCCccccccccccCCCceeeEEeecCCCCCChHhHHHH
Q 004356 158 ENISRSGAREGRAREAGEINKSLLTLGRVINALVEHSGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLST 237 (759)
Q Consensus 158 Er~~ks~a~g~r~kEa~~INkSLlaLg~VI~aL~~~~~hIPYRdSKLTrLLqdsLGGnskT~mIatVSP~~~~~eETlsT 237 (759)
||.+++++.|.|++|+.+||+||++||+||.||+++..|||||||||||||||+||||++|+|||||||+..+++||++|
T Consensus 236 Er~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGns~t~mia~vsP~~~~~~ETl~T 315 (325)
T 1bg2_A 236 EKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKST 315 (325)
T ss_dssp CCCCCCSSSCTTSCCCCCCCHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHGGGTSSSSCEEEEEEEECCBGGGHHHHHHH
T ss_pred CcccccCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHhCCCCcEEEEEEECCccccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccC
Q 004356 238 LDYAHRAKNI 247 (759)
Q Consensus 238 L~fA~rak~I 247 (759)
|+||.|||+|
T Consensus 316 L~fa~rak~I 325 (325)
T 1bg2_A 316 LLFGQRAKTI 325 (325)
T ss_dssp HHHHHTSCCC
T ss_pred HHHHHHhccC
Confidence 9999999987
No 15
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=100.00 E-value=4.6e-62 Score=530.93 Aligned_cols=236 Identities=41% Similarity=0.671 Sum_probs=190.0
Q ss_pred CCCCCCCCCCC-----CCCCCcHHHHHHHHHHHHhhc-CCeEEEEEEEEEEEcCceeecCCCCCCCccccCCCCCCeeEE
Q 004356 2 EGGARKKNGEF-----PSDAGVIPRAVKQIFDILEAQ-HAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALM 75 (759)
Q Consensus 2 ~G~~~~~~g~~-----~~~~GIIPRal~~LF~~l~~~-~~~~sV~vS~lEIYnE~v~DLL~~~~~~~~~~~~~~~~l~i~ 75 (759)
+|++++..|.. +.++|||||++++||+.++.. ..+|.|+|||+|||||.|+|||++.. ..+++.++
T Consensus 95 SGKTyTm~G~~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~--------~~~~l~i~ 166 (344)
T 4a14_A 95 SGKTYTMGEASVASLLEDEQGIVPRAMAEAFKLIDENDLLDCLVHVSYLEVYKEEFRDLLEVGT--------ASRDIQLR 166 (344)
T ss_dssp SSHHHHHCC--------CCCCHHHHHHHHHHHHHHHCTTSEEEEEEEEEEEETTEEEETTSSCC--------CGGGCEEE
T ss_pred CCceEeecccchhhhhhcccCCchHHHHHHHHhcccccceeeEEEEehhhhhHHHHHHHHHhcc--------ccccceee
Confidence 34555555543 578999999999999999875 45999999999999999999998653 24579999
Q ss_pred ecCCCCeEecCcEEEEecCHHHHHHHHHhchhccccccccccCCCCCcceEEEEEEEEeecCC-----CCCcceEEeeec
Q 004356 76 EDGKGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTP-----EGEEMIKCGKLN 150 (759)
Q Consensus 76 ed~~~gv~V~gL~e~~V~s~~e~~~lL~~G~~~R~~~~T~~N~~SSRSH~IftI~v~~~~~~~-----~~~~~~~~skL~ 150 (759)
+|+.++++|.|++++.|.|++|++.+|..|..+|++++|.||..|||||+||+|+|.+..... .+...+..|+|+
T Consensus 167 e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~skl~ 246 (344)
T 4a14_A 167 EDERGNVVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLPRPAPGQLLVSKFH 246 (344)
T ss_dssp ECTTSCEEEESCCCEECCSHHHHHHHHHHHHHHHHC------CCGGGSEEEEEEEEEEEC------------CEEEEEEE
T ss_pred eccCCCEEEEeeeeccccCHHHHHHHHHhcchhcccCcchhhhcccccceEEEEEeeeCCCCcccCCCccccceeeeeee
Confidence 999999999999999999999999999999999999999999999999999999998764322 123346789999
Q ss_pred cccccCCCcccCCCCchhhHHHHHHhhhhHHHHHHHHHHHhhC---CCCCCCCCCccccccccccCCCceeeEEeecCCC
Q 004356 151 LVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVINALVEH---SGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPS 227 (759)
Q Consensus 151 lVDLAGSEr~~ks~a~g~r~kEa~~INkSLlaLg~VI~aL~~~---~~hIPYRdSKLTrLLqdsLGGnskT~mIatVSP~ 227 (759)
|||||||||..++++.|.|++|+.+||+||++||+||.||+++ ..|||||||||||||||+||||++|+|||||||+
T Consensus 247 lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~vsP~ 326 (344)
T 4a14_A 247 FVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQRRGSHIPYRDSKITRILKDSLGGNAKTVMIACVSPS 326 (344)
T ss_dssp EEECCCCCCC--------------CCCSHHHHHHHHHHHHTCTTTTTSCCCGGGCHHHHHTTTSSSTTSEEEEEEEECCB
T ss_pred EEecccchhhcccCCchhhhhhheeechhHHhhhhHHHhcCCccccCCCCCcchhhHHHHhHhhcCCCcceEEEEEeCCC
Confidence 9999999999999999999999999999999999999999874 4699999999999999999999999999999999
Q ss_pred CCChHhHHHHHHHHHHhc
Q 004356 228 IHCLEETLSTLDYAHRAK 245 (759)
Q Consensus 228 ~~~~eETlsTL~fA~rak 245 (759)
..+++||++||+||.|||
T Consensus 327 ~~~~~ETl~TL~fA~rAk 344 (344)
T 4a14_A 327 SSDFDETLNTLNYASRAQ 344 (344)
T ss_dssp GGGHHHHHHHHHHHHHTC
T ss_pred ccchhHHhhhhhhhhhcC
Confidence 999999999999999996
No 16
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=100.00 E-value=4.2e-62 Score=532.70 Aligned_cols=236 Identities=42% Similarity=0.654 Sum_probs=187.7
Q ss_pred CCCCCCCCCCCCCCCCcHHHHHHHHHHHHhhc---CCeEEEEEEEEEEEcCceeecCCCCCCCccccCCCCCCeeEEecC
Q 004356 2 EGGARKKNGEFPSDAGVIPRAVKQIFDILEAQ---HAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALMEDG 78 (759)
Q Consensus 2 ~G~~~~~~g~~~~~~GIIPRal~~LF~~l~~~---~~~~sV~vS~lEIYnE~v~DLL~~~~~~~~~~~~~~~~l~i~ed~ 78 (759)
+|++++..|. +.++|||||++++||..+... +..|.|+|||+|||||.|+|||+|.. .++++.+++++
T Consensus 104 SGKTyTm~G~-~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~--------~~~~l~i~e~~ 174 (354)
T 3gbj_A 104 SGKSYTMMGT-ADQPGLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLDPKG--------SRQTLKVREHS 174 (354)
T ss_dssp SSHHHHHTBC-SSSBCHHHHHHHHHHHHHHHHCBTTEEEEEEEEEEEEETTEEEETTC--------------CBCBC---
T ss_pred CCCceEEecC-CCCCchhhHHHHHHHHHHHhhcccccceeeeceeEEEecCeeeEccCCCC--------CCcceEEEEcC
Confidence 3444455554 678999999999999998643 45899999999999999999998753 24579999999
Q ss_pred CCCeEecCcEEEEecCHHHHHHHHHhchhccccccccccCCCCCcceEEEEEEEEeecCC-CCCcceEEeeeccccccCC
Q 004356 79 KGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTP-EGEEMIKCGKLNLVDLAGS 157 (759)
Q Consensus 79 ~~gv~V~gL~e~~V~s~~e~~~lL~~G~~~R~~~~T~~N~~SSRSH~IftI~v~~~~~~~-~~~~~~~~skL~lVDLAGS 157 (759)
.+|++|.||+++.|.|++|++.+|..|..+|++++|.||..|||||+||+|+|.+...+. .+....+.|+|+|||||||
T Consensus 175 ~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~~skL~lVDLAGS 254 (354)
T 3gbj_A 175 VLGPYVDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDVKSGTSGEKVGKLSLVDLAGS 254 (354)
T ss_dssp ---CCBTTCCCEEECSHHHHHHHHHHHHHCC----------CTTSEEEEEEEEEEEEECTTSCEEEEEEEEEEEEECCCC
T ss_pred CCCEEEEeeEEEecCCHHHHHHHHHHHHhcCCeeecCCCCCCCcccEEEEEEEEEEecccCCCCCCeeEEEEEEEECCCC
Confidence 999999999999999999999999999999999999999999999999999998654332 2334467899999999999
Q ss_pred CcccCCCCchhhHHHHHHhhhhHHHHHHHHHHHhhC------CCCCCCCCCccccccccccCCCceeeEEeecCCCCCCh
Q 004356 158 ENISRSGAREGRAREAGEINKSLLTLGRVINALVEH------SGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCL 231 (759)
Q Consensus 158 Er~~ks~a~g~r~kEa~~INkSLlaLg~VI~aL~~~------~~hIPYRdSKLTrLLqdsLGGnskT~mIatVSP~~~~~ 231 (759)
||..++++.|.|++||.+||+||++||+||.||+++ ..|||||||||||||||+|||||+|+|||||||+..++
T Consensus 255 Er~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~vsP~~~~~ 334 (354)
T 3gbj_A 255 ERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGKNKNKFVPYRDSVLTWLLKDSLGGNSKTAMVATVSPAADNY 334 (354)
T ss_dssp CCCCCCC------CHHHHHHHHHHHHHHHHHHHHHC------CCCCCGGGSHHHHHTHHHHSTTCEEEEEEEECCBGGGH
T ss_pred CchhhcCCccccchhHHHhhHHHHHHHHHHHHHHhhhcccCCCCcccccccHHHHHHHHHhCCCCeEEEEEEeCCCcchH
Confidence 999999999999999999999999999999999973 47999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHhcc
Q 004356 232 EETLSTLDYAHRAKN 246 (759)
Q Consensus 232 eETlsTL~fA~rak~ 246 (759)
+||++||+||.||+.
T Consensus 335 ~ETlsTLr~a~~~~~ 349 (354)
T 3gbj_A 335 DETLSTLRYADRAKH 349 (354)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999999999985
No 17
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=100.00 E-value=7.4e-62 Score=531.34 Aligned_cols=238 Identities=33% Similarity=0.499 Sum_probs=198.9
Q ss_pred CCCCCCCCCC----CCCCCcHHHHHHHHHHHHhhc--CCeEEEEEEEEEEEcCceeecCCCCCCCccccCCCCCCeeEEe
Q 004356 3 GGARKKNGEF----PSDAGVIPRAVKQIFDILEAQ--HAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALME 76 (759)
Q Consensus 3 G~~~~~~g~~----~~~~GIIPRal~~LF~~l~~~--~~~~sV~vS~lEIYnE~v~DLL~~~~~~~~~~~~~~~~l~i~e 76 (759)
|++++..|.. +..+|||||++.+||..++.. +..|.|+|||+|||||.|+|||++.. .+.+++
T Consensus 97 GKTyTM~G~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~-----------~~~~~e 165 (360)
T 1ry6_A 97 GKTYTMLGSQPYGQSDTPGIFQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQKRK-----------MVAALE 165 (360)
T ss_dssp SHHHHHHBSSSTTTSSCBCHHHHHHHHHHHHHHHHCSSSCEEEEEEEEEEETTEEEESCCC-------------------
T ss_pred CCCEEEecCCCCCCccCCCcHHHHHHHHHHHHHhhccCCceEEEEEEEEeeCCeeEEcccCCc-----------cceeeE
Confidence 4444445542 578999999999999999753 45899999999999999999998542 466788
Q ss_pred cCCCCeEecCcEEEEecCHHHHHHHHHhchhccccccccccCCCCCcceEEEEEEEEeecCCCCCcceEEeeeccccccC
Q 004356 77 DGKGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAG 156 (759)
Q Consensus 77 d~~~gv~V~gL~e~~V~s~~e~~~lL~~G~~~R~~~~T~~N~~SSRSH~IftI~v~~~~~~~~~~~~~~~skL~lVDLAG 156 (759)
++.++++|.||+++.|.|++|++.+|..|..+|++++|.||..|||||+||+|+|.... .....|+|+||||||
T Consensus 166 ~~~~~~~v~gl~~~~V~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~------~~~~~skL~lVDLAG 239 (360)
T 1ry6_A 166 NGKKEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKDIN------KNTSLGKIAFIDLAG 239 (360)
T ss_dssp ---CCBCGGGSCCEEECSHHHHHHHHHHHHHHHHHCTTCCTTGGGGSEEEEEEEEEETT------TTEEEEEEEEEECCC
T ss_pred cCCCCEEEcCcEEEEeCCHHHHHHHHHHHhhhhhcccccccCCCccceEEEEEEEEecc------CCcceeEEEEEECCC
Confidence 99999999999999999999999999999999999999999999999999999997532 124679999999999
Q ss_pred CCcccCCCCch-hhHHHHHHhhhhHHHHHHHHHHHhhCCCCCCCCCCccccccccccCCCceeeEEeecCCCCCChHhHH
Q 004356 157 SENISRSGARE-GRAREAGEINKSLLTLGRVINALVEHSGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETL 235 (759)
Q Consensus 157 SEr~~ks~a~g-~r~kEa~~INkSLlaLg~VI~aL~~~~~hIPYRdSKLTrLLqdsLGGnskT~mIatVSP~~~~~eETl 235 (759)
|||.+++++.| .+++||.+||+||++||+||.||..+..||||||||||||||||||||++|+|||||||+..+++||+
T Consensus 240 SEr~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ETl 319 (360)
T 1ry6_A 240 SERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSDKNHIPFRDSELTKVLRDIFVGKSKSIMIANISPTISCCEQTL 319 (360)
T ss_dssp TTGGGGGGCSSHHHHHHHHHHHHHHHHHHHHHHHHTTSTTSCCGGGCHHHHHTGGGGSSSCEEEEEEEECCBGGGHHHHH
T ss_pred CccccccccccccchHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCHHHHHHHHHhCCCCeEEEEEEeCCCcccHHHHH
Confidence 99999999876 46899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCcccccccccc
Q 004356 236 STLDYAHRAKNIKNKPEINQKM 257 (759)
Q Consensus 236 sTL~fA~rak~Ikn~p~vN~~~ 257 (759)
+||+||.|||+|+|.|..|..+
T Consensus 320 sTLrfA~rak~i~n~~~~~~~~ 341 (360)
T 1ry6_A 320 NTLRYSSRVKNKGNSKLEGKPI 341 (360)
T ss_dssp HHHHHHHHHCC-----------
T ss_pred HHHHHHHHHhhcccCcccCCCC
Confidence 9999999999999977666543
No 18
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=100.00 E-value=2.2e-61 Score=525.76 Aligned_cols=243 Identities=35% Similarity=0.486 Sum_probs=197.0
Q ss_pred CCCCCCCCCCCCCCCcHHHHHHHHHHHHhh---cCCeEEEEEEEEEEEcCceeecCCCCCCCccccCCCCCCeeEEec-C
Q 004356 3 GGARKKNGEFPSDAGVIPRAVKQIFDILEA---QHAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALMED-G 78 (759)
Q Consensus 3 G~~~~~~g~~~~~~GIIPRal~~LF~~l~~---~~~~~sV~vS~lEIYnE~v~DLL~~~~~~~~~~~~~~~~l~i~ed-~ 78 (759)
|++++..| +++|||||++++||+.+.. .+.+|.|+|||+|||||.|+|||++...... .......+.++++ +
T Consensus 97 GKTyTM~G---~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~-~~~~~~~~~i~~~~~ 172 (347)
T 1f9v_A 97 GKTFTMLN---PGDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKE-DTSIGLKHEIRHDQE 172 (347)
T ss_dssp SHHHHHHS---TTTSHHHHHHHHHHHHHHHHGGGTCEEEEEEEEEEEETTEEEETTC--------------CCCEEEETT
T ss_pred CCcEeccC---CCCCchHHHHHHHHHHHHhhhhcCCceEEEEEEEEEECCeeeeccCCcccccc-ccccCCceeEEEecC
Confidence 44444454 3579999999999999864 3569999999999999999999997642111 1111235677765 5
Q ss_pred CCCeEecCcEEEEecCHHHHHHHHHhchhccccccccccCCCCCcceEEEEEEEEeecCCCCCcceEEeeeccccccCCC
Q 004356 79 KGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSE 158 (759)
Q Consensus 79 ~~gv~V~gL~e~~V~s~~e~~~lL~~G~~~R~~~~T~~N~~SSRSH~IftI~v~~~~~~~~~~~~~~~skL~lVDLAGSE 158 (759)
.++++|.|++++.|.++++++.+|..|..+|++++|.||..|||||+||+|+|....... .....|+|+||||||||
T Consensus 173 ~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~---~~~~~skL~lVDLAGSE 249 (347)
T 1f9v_A 173 TKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGSNAKT---GAHSYGTLNLVDLAGSE 249 (347)
T ss_dssp TTEEEETTCCCEECSSGGGHHHHHHHHC-----------CCGGGSEEEEEEEEEEECC-----CCEEEEEEEEEECCCCC
T ss_pred CCceEecCCEEEEcCCHHHHHHHHHHHHhccceeeccCCCCCCCceEEEEEEEEEecCCC---CceeeeEEEEEECCCCc
Confidence 678999999999999999999999999999999999999999999999999998754332 23568999999999999
Q ss_pred cccCCCCchhhHHHHHHhhhhHHHHHHHHHHHhhCC---CCCCCCCCccccccccccCCCceeeEEeecCCCCCChHhHH
Q 004356 159 NISRSGAREGRAREAGEINKSLLTLGRVINALVEHS---GHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETL 235 (759)
Q Consensus 159 r~~ks~a~g~r~kEa~~INkSLlaLg~VI~aL~~~~---~hIPYRdSKLTrLLqdsLGGnskT~mIatVSP~~~~~eETl 235 (759)
|.+++++.|.|++||.+||+||++||+||.||+++. .||||||||||||||||||||++|+|||||||+..+++||+
T Consensus 250 r~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lLqdsLgGnskt~mI~~vsP~~~~~~ETl 329 (347)
T 1f9v_A 250 RINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETL 329 (347)
T ss_dssp CCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHTSCC---CCCCGGGSHHHHHHHHHHSTTCEEEEEEEECCSGGGHHHHH
T ss_pred cccccccchhhhHHHHHHhHHHHHHHHHHHHHhcccCCCCcCccccCHHHHHHHHHhCCCccEEEEEEeCCccccHHHHH
Confidence 999999999999999999999999999999999876 79999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCccccc
Q 004356 236 STLDYAHRAKNIKNKPE 252 (759)
Q Consensus 236 sTL~fA~rak~Ikn~p~ 252 (759)
+||+||.||++|+..|+
T Consensus 330 ~TLrfA~r~~~i~~~~r 346 (347)
T 1f9v_A 330 NSLRFASKVNSTRLVSR 346 (347)
T ss_dssp HHHHHHHHHCCTTTC--
T ss_pred HHHHHHHHHhhhccCCC
Confidence 99999999999999874
No 19
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=100.00 E-value=3.1e-61 Score=528.89 Aligned_cols=238 Identities=35% Similarity=0.499 Sum_probs=184.0
Q ss_pred CCCCCCCCCCC---CCCCCcHHHHHHHHHHHHhh---cCCeEEEEEEEEEEEcCceeecCCCCCCCccccCCCCCCeeEE
Q 004356 2 EGGARKKNGEF---PSDAGVIPRAVKQIFDILEA---QHAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALM 75 (759)
Q Consensus 2 ~G~~~~~~g~~---~~~~GIIPRal~~LF~~l~~---~~~~~sV~vS~lEIYnE~v~DLL~~~~~~~~~~~~~~~~l~i~ 75 (759)
+|++++..|.. +..+|||||++.+||+.+.. .+..|.|+|||+|||||.|+|||++... ......+.++
T Consensus 127 SGKTyTM~G~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~-----~~~~~~l~ir 201 (376)
T 2rep_A 127 SGKTFTMEGGPGGDPQLEGLIPRALRHLFSVAQELSGQGWTYSFVASYVEIYNETVRDLLATGTR-----KGQGGECEIR 201 (376)
T ss_dssp SSHHHHHTBCSSCCGGGBCHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEEEETTEEEETTCCC-------------CCEE
T ss_pred CCCceEeecCCCCCcccCCcHHHHHHHHHHHHHHhhcCCeEEEEEEEEEEEECCEeeEccccccc-----cccCCCceEE
Confidence 35555556642 45799999999999999875 3568999999999999999999987531 1123467888
Q ss_pred ec--CCCCeEecCcEEEEecCHHHHHHHHHhchhccccccccccCCCCCcceEEEEEEEEeecCCCCCcceEEeeecccc
Q 004356 76 ED--GKGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVD 153 (759)
Q Consensus 76 ed--~~~gv~V~gL~e~~V~s~~e~~~lL~~G~~~R~~~~T~~N~~SSRSH~IftI~v~~~~~~~~~~~~~~~skL~lVD 153 (759)
++ +.++++|.|++++.|.+++|++.+|..|.++|++++|.||..|||||+||+|+|....... .....|+|+|||
T Consensus 202 ~~~~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~~~~---~~~~~skL~lVD 278 (376)
T 2rep_A 202 RAGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERSSRSHSVFQLQISGEHSSR---GLQCGAPLSLVD 278 (376)
T ss_dssp EC---CCCEEETTCCCEEECSHHHHHHHHHHHHHHHHHCC-----CGGGSEEEEEEEEEEEESSS---CCEEEEEEEEEE
T ss_pred eccCCCCCEEECCcEEEEeCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEEEecCC---CcEEEeEEEEEE
Confidence 87 6889999999999999999999999999999999999999999999999999998765432 345689999999
Q ss_pred ccCCCcccCCCCch----hhHHHHHHhhhhHHHHHHHHHHHhhCCCCCCCCCCccccccccccCCCceeeEEeecCCCCC
Q 004356 154 LAGSENISRSGARE----GRAREAGEINKSLLTLGRVINALVEHSGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIH 229 (759)
Q Consensus 154 LAGSEr~~ks~a~g----~r~kEa~~INkSLlaLg~VI~aL~~~~~hIPYRdSKLTrLLqdsLGGnskT~mIatVSP~~~ 229 (759)
||||||.+++++.| .|++|+.+||+||++||+||.||+++..||||||||||||||||||||++|+|||||||+..
T Consensus 279 LAGSEr~~~t~~~g~~~~~rlkE~~~INkSL~aLg~vI~aL~~~~~hVPYRdSkLT~LLqdsLgGnskT~mIa~isP~~~ 358 (376)
T 2rep_A 279 LAGSERLDPGLALGPGERERLRETQAINSSLSTLGLVIMALSNKESHVPYRNSKLTYLLQNSLGGSAKMLMFVNISPLEE 358 (376)
T ss_dssp CCCCC------------------------CHHHHHHHHHHHHTTCSCCCGGGSHHHHHTGGGTSTTCEEEEEEEECCCGG
T ss_pred CCCCcccccccccCccccchhhHHhHhhHHHHHHHHHHHHHhcCCCccCCcCCHHHHHHHHhhCCCCeEEEEEEeCCchh
Confidence 99999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHhHHHHHHHHHHhccC
Q 004356 230 CLEETLSTLDYAHRAKNI 247 (759)
Q Consensus 230 ~~eETlsTL~fA~rak~I 247 (759)
+++||++||+||.|++++
T Consensus 359 ~~~ETlsTLrfA~Rv~~~ 376 (376)
T 2rep_A 359 NVSESLNSLRFASKVNQC 376 (376)
T ss_dssp GHHHHHHHHHHHHHHC--
T ss_pred hHHHHHHHHHHHHHHhcC
Confidence 999999999999999863
No 20
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=100.00 E-value=1.7e-61 Score=528.22 Aligned_cols=240 Identities=36% Similarity=0.583 Sum_probs=192.9
Q ss_pred CCCCCCCCCCCC--CCCCcHHHHHHHHHHHHhhc-CCeEEEEEEEEEEEcCceeecCCCCCCCccccCCCCCCeeEEecC
Q 004356 2 EGGARKKNGEFP--SDAGVIPRAVKQIFDILEAQ-HAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALMEDG 78 (759)
Q Consensus 2 ~G~~~~~~g~~~--~~~GIIPRal~~LF~~l~~~-~~~~sV~vS~lEIYnE~v~DLL~~~~~~~~~~~~~~~~l~i~ed~ 78 (759)
+|++++..|... ..+|||||++++||+.++.. +..|.|+|||+|||||.|+|||++.+.. .+...++.+++++
T Consensus 115 SGKTyTM~G~~~~~~~~Giipra~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~----~~~~~~l~i~e~~ 190 (358)
T 2nr8_A 115 AGKTYTMMGATENYKHRGILPRALQQVFRMIEERPTHAITVRVSYLEIYNESLFDLLSTLPYV----GPSVTPMTIVENP 190 (358)
T ss_dssp SSHHHHHTBCSSCGGGBCHHHHHHHHHHHHHHTCTTSCEEEEEEEEEEETTEEEETTSSSTTS----CTTTSCCEEEEET
T ss_pred CCCceEecccccccccCCcHHHHHHHHHHHHhhcCCceEEEEEEEEEEeCCeeeECcCCcccc----CccCCceEEEECC
Confidence 355555566432 35999999999999999875 4589999999999999999999975421 1234578999998
Q ss_pred CCCeEecCcEEEEecCHHHHHHHHHhchhccccccccccCCCCCcceEEEEEEEEeecCCCCCcceEEeeeccccccCCC
Q 004356 79 KGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSE 158 (759)
Q Consensus 79 ~~gv~V~gL~e~~V~s~~e~~~lL~~G~~~R~~~~T~~N~~SSRSH~IftI~v~~~~~~~~~~~~~~~skL~lVDLAGSE 158 (759)
.|++|.||+++.|.+++|++.+|..|..+|++++|.||..|||||+||+|+|........+ .....|+|+||||||||
T Consensus 191 -~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~-~~~~~skL~lVDLAGSE 268 (358)
T 2nr8_A 191 -QGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTLSE-EKYITSKINLVDLAGSE 268 (358)
T ss_dssp -TEEEEETCCCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEEEC--------CCEEEEEEEEECCCCC
T ss_pred -CceEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcCeEEEEEEEEEEeccCCC-CCEEEEEEEEEECCCCC
Confidence 7899999999999999999999999999999999999999999999999999876543332 33467999999999999
Q ss_pred cccCCCCchhhHHHHHHhhhhHHHHHHHHHHHhhC-CCCCCCCCCccccccccccCCCceeeEEeecCCCCCChHhHHHH
Q 004356 159 NISRSGAREGRAREAGEINKSLLTLGRVINALVEH-SGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLST 237 (759)
Q Consensus 159 r~~ks~a~g~r~kEa~~INkSLlaLg~VI~aL~~~-~~hIPYRdSKLTrLLqdsLGGnskT~mIatVSP~~~~~eETlsT 237 (759)
|++++++.|.|++|+.+||+||++||+||.||+++ ..|||||||||||||||+|||||+|+|||||||+..+++||++|
T Consensus 269 r~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hiPyRdSkLT~LLqdsLgGnskt~mIa~isP~~~~~~ETlsT 348 (358)
T 2nr8_A 269 RLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLTHALKDSLGGNCNMVLVTNIYGEAAQLEETLSS 348 (358)
T ss_dssp ----------------CCSTHHHHHHHHHHHHHC-----CCGGGSHHHHHTHHHHSSSSEEEEEEEECCSGGGHHHHHHH
T ss_pred cccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHH
Confidence 99999999999999999999999999999999985 46999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccC
Q 004356 238 LDYAHRAKNI 247 (759)
Q Consensus 238 L~fA~rak~I 247 (759)
|+||.|||+|
T Consensus 349 LrfA~Rak~I 358 (358)
T 2nr8_A 349 LRFASRMKLV 358 (358)
T ss_dssp HHHHTTGGGC
T ss_pred HHHHHHhccC
Confidence 9999999986
No 21
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=100.00 E-value=6.4e-61 Score=522.73 Aligned_cols=243 Identities=35% Similarity=0.490 Sum_probs=188.3
Q ss_pred CCCCCCCCCCCCCCCcHHHHHHHHHHHHhh---cCCeEEEEEEEEEEEcCceeecCCCCCCCccc-cCCCCCCeeEEecC
Q 004356 3 GGARKKNGEFPSDAGVIPRAVKQIFDILEA---QHAEYSMKVTFLELYNEEISDLLALEETSKFV-DDKSKKPIALMEDG 78 (759)
Q Consensus 3 G~~~~~~g~~~~~~GIIPRal~~LF~~l~~---~~~~~sV~vS~lEIYnE~v~DLL~~~~~~~~~-~~~~~~~l~i~ed~ 78 (759)
|+++|..|. ++|||||++++||+.+.. .+.+|.|+|||+|||||.|+|||.+....... .......+.|++++
T Consensus 98 GKTyTm~g~---~~Giipr~~~~lF~~~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~~~~~~~~~~~i~~~~ 174 (349)
T 3t0q_A 98 GKTYTMLNA---GDGMIPMTLSHIFKWTANLKERGWNYEMECEYIEIYNETILDLLRDFKSHDNIDEILDSQKHDIRHDH 174 (349)
T ss_dssp SHHHHHHST---TTSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEETTC---------------CCCEEEET
T ss_pred CCceEeCCC---CCchhhHHHHHHHHHHHHhhhcCceeEEEEEEEEEEcchhhccccccccccccccccccccceeEEec
Confidence 444444553 469999999999998875 35589999999999999999999875421111 11123457777664
Q ss_pred -CCCeEecCcEEEEecCHHHHHHHHHhchhccccccccccCCCCCcceEEEEEEEEeecCCCCCcceEEeeeccccccCC
Q 004356 79 -KGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGS 157 (759)
Q Consensus 79 -~~gv~V~gL~e~~V~s~~e~~~lL~~G~~~R~~~~T~~N~~SSRSH~IftI~v~~~~~~~~~~~~~~~skL~lVDLAGS 157 (759)
.+|++|.|++++.|.|++|++.+|..|..+|++++|.||..|||||+||+|+|........ ....|+|+|||||||
T Consensus 175 ~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~---~~~~~kL~lVDLAGS 251 (349)
T 3t0q_A 175 EKQGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHINGRNLHTG---ETSQGKLNLVDLAGS 251 (349)
T ss_dssp TTTEEEETTCCCEECCCHHHHHHHHHHC------------CTGGGSEEEEEEEEEEEETTTC---CEEEEEEEEEECCCC
T ss_pred CCCCEEEeCCEEEEeCCHHHHHHHHHHHHHhCcccccccccccCCcceEEEEEEEEEecCCC---CeeEEEEEEEeCCCC
Confidence 5689999999999999999999999999999999999999999999999999987654432 346799999999999
Q ss_pred CcccCCCCchhhHHHHHHhhhhHHHHHHHHHHHhhCCC---CCCCCCCccccccccccCCCceeeEEeecCCCCCChHhH
Q 004356 158 ENISRSGAREGRAREAGEINKSLLTLGRVINALVEHSG---HVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEET 234 (759)
Q Consensus 158 Er~~ks~a~g~r~kEa~~INkSLlaLg~VI~aL~~~~~---hIPYRdSKLTrLLqdsLGGnskT~mIatVSP~~~~~eET 234 (759)
||++++++.|.|++|+.+||+||++||+||.||+++.. ||||||||||||||||||||++|+|||||||+..+++||
T Consensus 252 Er~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lLqdsLgGnskt~mi~~vsP~~~~~~ET 331 (349)
T 3t0q_A 252 ERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDAGKRYIPFRNSKLTYLLQYSLVGDSKTLMFVNIPPDPNHISET 331 (349)
T ss_dssp CCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCCCGGGSHHHHHHGGGSSTTCEEEEEEEECCCGGGHHHH
T ss_pred CccccccCccccchhHHhhhHhHHHHHHHHHHHhcccCCCCcCCCcCCHHHHHHHHhcCCCceEEEEEEeCCchhhHHHH
Confidence 99999999999999999999999999999999998754 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCcccc
Q 004356 235 LSTLDYAHRAKNIKNKP 251 (759)
Q Consensus 235 lsTL~fA~rak~Ikn~p 251 (759)
++||+||.|+++|+..|
T Consensus 332 l~TL~fA~rv~~ik~~~ 348 (349)
T 3t0q_A 332 LNSLRFASKVNSTKIAK 348 (349)
T ss_dssp HHHHHHHHHHHC-----
T ss_pred HHHHHHHHHhhhcccCC
Confidence 99999999999998765
No 22
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.4e-61 Score=527.18 Aligned_cols=240 Identities=37% Similarity=0.584 Sum_probs=191.7
Q ss_pred CCCCCCCCCC--CCCCCCcHHHHHHHHHHHHhhc-CCeEEEEEEEEEEEcCceeecCCCCCCCccccCCCCCCeeEEecC
Q 004356 2 EGGARKKNGE--FPSDAGVIPRAVKQIFDILEAQ-HAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALMEDG 78 (759)
Q Consensus 2 ~G~~~~~~g~--~~~~~GIIPRal~~LF~~l~~~-~~~~sV~vS~lEIYnE~v~DLL~~~~~~~~~~~~~~~~l~i~ed~ 78 (759)
+|+++|..|. .+.++|||||++++||+.+... +..|.|+|||+|||||+|+|||++.+.. .....++.+++++
T Consensus 116 SGKTyTM~G~~~~~~~~Giipra~~~lF~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~----~~~~~~~~~~~~~ 191 (359)
T 3nwn_A 116 AGKTYTMMGATENYKHRGILPRALQQVFRMIEERPTHAITVRVSYLEIYNESLFDLLSTLPYV----GPSVTPMTIVENP 191 (359)
T ss_dssp SSHHHHHTBCSSCGGGBCHHHHHHHHHHHHHHTCTTSCEEEEEEEEEEETTEEEETTSSSTTS----CTTTSCCEEEEET
T ss_pred CCccEEeCCccCCccchhhHHHHHHHHHHHhhcCCCCcEEEEEEEEEEecccccccccccccc----ccccccceEEecC
Confidence 4555555664 3456899999999999998765 5589999999999999999999875421 1234467778776
Q ss_pred CCCeEecCcEEEEecCHHHHHHHHHhchhccccccccccCCCCCcceEEEEEEEEeecCCCCCcceEEeeeccccccCCC
Q 004356 79 KGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSE 158 (759)
Q Consensus 79 ~~gv~V~gL~e~~V~s~~e~~~lL~~G~~~R~~~~T~~N~~SSRSH~IftI~v~~~~~~~~~~~~~~~skL~lVDLAGSE 158 (759)
.|++|.|++++.|.+++|++.+|..|..+|++++|.||..|||||+||+|+|........ ......|+|+||||||||
T Consensus 192 -~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~~~~~~~~-~~~~~~skL~lVDLAGSE 269 (359)
T 3nwn_A 192 -QGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTLS-EEKYITSKINLVDLAGSE 269 (359)
T ss_dssp -TEEEEETCCCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEEEC--------CCEEEEEEEEECCCCC
T ss_pred -CceEEeccEEEEecCHHHHHHHHHhhhhhcccccccCccccCcceEEEEEEEEeeccccc-Ccccccccceeeeccccc
Confidence 479999999999999999999999999999999999999999999999999987654333 344578999999999999
Q ss_pred cccCCCCchhhHHHHHHhhhhHHHHHHHHHHHhhC-CCCCCCCCCccccccccccCCCceeeEEeecCCCCCChHhHHHH
Q 004356 159 NISRSGAREGRAREAGEINKSLLTLGRVINALVEH-SGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLST 237 (759)
Q Consensus 159 r~~ks~a~g~r~kEa~~INkSLlaLg~VI~aL~~~-~~hIPYRdSKLTrLLqdsLGGnskT~mIatVSP~~~~~eETlsT 237 (759)
|++++++.|.|++|+.+||+||++||+||.||+++ ..|||||||||||||||||||||+|+|||||||+..+++||++|
T Consensus 270 r~~~t~~~g~rl~E~~~IN~SL~~Lg~vI~aL~~~~~~hVPYRdSkLT~lLqdsLgGnskt~mI~~isP~~~~~~ETlsT 349 (359)
T 3nwn_A 270 RLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLTHALKDSLGGNCNMVLVTNIYGEAAQLEETLSS 349 (359)
T ss_dssp ----------------CCSTHHHHHHHHHHHHHC-----CCGGGSHHHHHTHHHHSSSSEEEEEEEECCSGGGHHHHHHH
T ss_pred cccccCCchhHHHhhhhhcccHHHHHHHHHHHHhcCCCcCCcccCHHHHHHHHhcCCCccEEEEEEeCCchhhHHHHHHH
Confidence 99999999999999999999999999999999975 57999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccC
Q 004356 238 LDYAHRAKNI 247 (759)
Q Consensus 238 L~fA~rak~I 247 (759)
|+||+|||+|
T Consensus 350 L~fA~rak~I 359 (359)
T 3nwn_A 350 LRFASRMKLV 359 (359)
T ss_dssp HHHHTTGGGC
T ss_pred HHHHHHHcCC
Confidence 9999999987
No 23
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-60 Score=525.71 Aligned_cols=243 Identities=35% Similarity=0.498 Sum_probs=200.9
Q ss_pred CCCCCCCCCCCCCCCcHHHHHHHHHHHHhh---cCCeEEEEEEEEEEEcCceeecCCCCCCCccccCCCCCCeeEEecC-
Q 004356 3 GGARKKNGEFPSDAGVIPRAVKQIFDILEA---QHAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALMEDG- 78 (759)
Q Consensus 3 G~~~~~~g~~~~~~GIIPRal~~LF~~l~~---~~~~~sV~vS~lEIYnE~v~DLL~~~~~~~~~~~~~~~~l~i~ed~- 78 (759)
|+++|..| +++|||||++++||..+.. .+..|.|+|||+|||||.|+|||+|...... ......++.+++++
T Consensus 153 GKTyTM~g---~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~-~~~~~~~~~i~~~~~ 228 (403)
T 4etp_A 153 GKTFTMLN---PGDGIIPSTISHIFNWINKLKTKGWDYKVNAEFIEIYNENIVDLLRSDNNNKE-DTSIGLKHEIRHDQE 228 (403)
T ss_dssp SHHHHHHC---TTTSHHHHHHHHHHHHHHHHHTTTEEEEEEEEEEEEETTEEEETTCC---------CCSCCCCEEEETT
T ss_pred CCceEeCC---CCCccchhHHHHHHHHHHhhhccCceEEEEEEEEEEecceeeEccCCcccccc-ccccCcceeeEEeCC
Confidence 44444454 3569999999999999875 3458999999999999999999997652211 11123356676665
Q ss_pred CCCeEecCcEEEEecCHHHHHHHHHhchhccccccccccCCCCCcceEEEEEEEEeecCCCCCcceEEeeeccccccCCC
Q 004356 79 KGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSE 158 (759)
Q Consensus 79 ~~gv~V~gL~e~~V~s~~e~~~lL~~G~~~R~~~~T~~N~~SSRSH~IftI~v~~~~~~~~~~~~~~~skL~lVDLAGSE 158 (759)
.++++|.|++++.|.|+++++.+|..|..+|++++|.||..|||||+||+|+|........ ....|+|+||||||||
T Consensus 229 ~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~---~~~~~kL~lVDLAGSE 305 (403)
T 4etp_A 229 TKTTTITNVTSVKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTG---AHSYGTLNLVDLAGSE 305 (403)
T ss_dssp TTEEEETTCCCEECCCHHHHHHHHHHHC--C----CHHHHHHHTSEEEEEEEEEEEETTTC---CEEEEEEEEEECCCCC
T ss_pred CCCEEecCcEEEEeCCHHHHHHHHHHHHHhcccccccCCcccCCcccEEEEEEEEeecCCC---CeeEEEEEEEECCCCc
Confidence 5779999999999999999999999999999999999999999999999999987654332 3467999999999999
Q ss_pred cccCCCCchhhHHHHHHhhhhHHHHHHHHHHHhhCCC---CCCCCCCccccccccccCCCceeeEEeecCCCCCChHhHH
Q 004356 159 NISRSGAREGRAREAGEINKSLLTLGRVINALVEHSG---HVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETL 235 (759)
Q Consensus 159 r~~ks~a~g~r~kEa~~INkSLlaLg~VI~aL~~~~~---hIPYRdSKLTrLLqdsLGGnskT~mIatVSP~~~~~eETl 235 (759)
|++++++.|.|++||.+||+||++||+||.||+++.+ |||||||||||||||||||||+|+|||||||+..+++||+
T Consensus 306 r~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~LLqdsLgGnskt~mi~~vsP~~~~~~ETl 385 (403)
T 4etp_A 306 RINVSQVVGDRLRETQNINKSLSALGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETL 385 (403)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTSSCTTTSCCCGGGSHHHHHTGGGTSTTCEEEEEEEECCSGGGHHHHH
T ss_pred cccccCChhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccchHHHHHHHhcCCCceEEEEEEeCCchhhHHHHH
Confidence 9999999999999999999999999999999998754 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCccccc
Q 004356 236 STLDYAHRAKNIKNKPE 252 (759)
Q Consensus 236 sTL~fA~rak~Ikn~p~ 252 (759)
+||+||+|+++|+..|.
T Consensus 386 ~TL~fA~rv~~~~~~~r 402 (403)
T 4etp_A 386 NSLRFASKVNSTRLVSR 402 (403)
T ss_dssp HHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhhcccCCC
Confidence 99999999999999885
No 24
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=100.00 E-value=2.6e-60 Score=522.16 Aligned_cols=230 Identities=40% Similarity=0.634 Sum_probs=182.7
Q ss_pred CCCCCCCCCCC-----CCCCCcHHHHHHHHHHHHhh---cCCeEEEEEEEEEEEcCceeecCCCCCCCccccCCCCCCee
Q 004356 2 EGGARKKNGEF-----PSDAGVIPRAVKQIFDILEA---QHAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIA 73 (759)
Q Consensus 2 ~G~~~~~~g~~-----~~~~GIIPRal~~LF~~l~~---~~~~~sV~vS~lEIYnE~v~DLL~~~~~~~~~~~~~~~~l~ 73 (759)
+|+++|..|+. +..+|||||++.+||..+.. .+..|.|+|||+|||||.|+|||++. ..+.
T Consensus 146 SGKTyTM~G~~~~~~~~~~~Giipr~~~~lF~~~~~~~~~~~~~~V~vS~~EIYnE~v~DLL~~~-----------~~l~ 214 (387)
T 2heh_A 146 SGKTHTMGGDLSGKAQNASKGIYAMASRDVFLLKNQPCYRKLGLEVYVTFFEIYNGKLFDLLNKK-----------AKLR 214 (387)
T ss_dssp SSHHHHHC-----------CCHHHHHHHHHHHHHTSHHHHTTTCEEEEEEEEEETTEEEETTTTT-----------EECE
T ss_pred CCCCeEeccCCCCCCcccCCceehhhHHHHHHHhhcccccCceEEEEEEEEEecCCeEEECCCCC-----------ccce
Confidence 34555555642 46799999999999999864 35689999999999999999999853 3588
Q ss_pred EEecCCCCeEecCcEEEEecCHHHHHHHHHhchhccccccccccCCCCCcceEEEEEEEEeecCCCCCcceEEeeecccc
Q 004356 74 LMEDGKGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVD 153 (759)
Q Consensus 74 i~ed~~~gv~V~gL~e~~V~s~~e~~~lL~~G~~~R~~~~T~~N~~SSRSH~IftI~v~~~~~~~~~~~~~~~skL~lVD 153 (759)
|++|+.+|++|.||+++.|.|++|++.+|..|..+|++++|.||..|||||+||+|+|.... ...|+|+|||
T Consensus 215 i~ed~~~~v~v~gl~~~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~--------~~~skL~lVD 286 (387)
T 2heh_A 215 VLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAKG--------RMHGKFSLVD 286 (387)
T ss_dssp EEECTTCCEEEETCCCEEESSHHHHHHHHHHHHHHC---------CGGGSEEEEEEEEESSS--------SEEEEEEEEE
T ss_pred EEEcCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhCCcccCcCcCCcccceEEEEEEEEECC--------eeeeEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999997531 2579999999
Q ss_pred ccCCCcccCCC-CchhhHHHHHHhhhhHHHHHHHHHHHhhCCCCCCCCCCccccccccc-cCCCceeeEEeecCCCCCCh
Q 004356 154 LAGSENISRSG-AREGRAREAGEINKSLLTLGRVINALVEHSGHVPYRDSKLTRLLRDS-LGGKTKTCIIATVSPSIHCL 231 (759)
Q Consensus 154 LAGSEr~~ks~-a~g~r~kEa~~INkSLlaLg~VI~aL~~~~~hIPYRdSKLTrLLqds-LGGnskT~mIatVSP~~~~~ 231 (759)
||||||..+++ +.+.+++|+.+||+||++||+||.||+++..|||||||||||||||| ||||++|+|||||||+..++
T Consensus 287 LAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~~hvPYRdSKLTrlLqdsllGgnskT~mIa~isP~~~~~ 366 (387)
T 2heh_A 287 LAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIATISPGISSC 366 (387)
T ss_dssp CCCCC---------------CHHHHHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTGGGGSSTTEEEEEEEEECCBGGGH
T ss_pred CCCCccccccccccccchhhHHHHhHHHHHHHHHHHHHhcCCCCCCccccHHHHHHhhhccCCCCeEEEEEEeCCccchH
Confidence 99999998886 46678899999999999999999999999999999999999999999 69999999999999999999
Q ss_pred HhHHHHHHHHHHhccCccc
Q 004356 232 EETLSTLDYAHRAKNIKNK 250 (759)
Q Consensus 232 eETlsTL~fA~rak~Ikn~ 250 (759)
+||++||+||.|||+|++.
T Consensus 367 ~ETlsTLrfA~rak~I~~~ 385 (387)
T 2heh_A 367 EYTLNTLRYADRVKELSPH 385 (387)
T ss_dssp HHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhccCcCC
Confidence 9999999999999999875
No 25
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=100.00 E-value=3.4e-60 Score=524.35 Aligned_cols=232 Identities=39% Similarity=0.616 Sum_probs=185.4
Q ss_pred CCCCCCCCCC-----CCCCCCcHHHHHHHHHHHHhh---cCCeEEEEEEEEEEEcCceeecCCCCCCCccccCCCCCCee
Q 004356 2 EGGARKKNGE-----FPSDAGVIPRAVKQIFDILEA---QHAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIA 73 (759)
Q Consensus 2 ~G~~~~~~g~-----~~~~~GIIPRal~~LF~~l~~---~~~~~sV~vS~lEIYnE~v~DLL~~~~~~~~~~~~~~~~l~ 73 (759)
+|+++|..|+ .+..+|||||++.+||..+.. .+..|.|+|||+|||||.|+|||++. ..+.
T Consensus 166 SGKTyTM~G~~~~~~~~~~~Giipra~~~lF~~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~-----------~~l~ 234 (410)
T 1v8k_A 166 SGKTHTMGGDLSGKSQNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNKK-----------AKLR 234 (410)
T ss_dssp SSHHHHHHCBC----CBGGGSHHHHHHHHHHHHHTSHHHHTTCCEEEEEEEEEETTEEEETTTTT-----------EEEE
T ss_pred CCCCeEeecCCCCCCccccCcchhhhHHHHHHHHhhhcccCccEEEEEEEEEeeCCEEEECCCCC-----------CCce
Confidence 3445555553 245789999999999999864 35689999999999999999999853 3689
Q ss_pred EEecCCCCeEecCcEEEEecCHHHHHHHHHhchhccccccccccCCCCCcceEEEEEEEEeecCCCCCcceEEeeecccc
Q 004356 74 LMEDGKGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVD 153 (759)
Q Consensus 74 i~ed~~~gv~V~gL~e~~V~s~~e~~~lL~~G~~~R~~~~T~~N~~SSRSH~IftI~v~~~~~~~~~~~~~~~skL~lVD 153 (759)
|++|+.+|++|.||+++.|.|++|++.+|..|..+|++++|.||..|||||+||+|+|... + ...|+|+|||
T Consensus 235 i~ed~~~~v~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~-----~---~~~skL~lVD 306 (410)
T 1v8k_A 235 VLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTK-----G---RLHGKFSLVD 306 (410)
T ss_dssp EEECSSCCEEEETCCCEEESSHHHHHHHHHHHHHTCC--------CCCSSEEEEEEEEESS-----S---SEEEEEEEEE
T ss_pred EEECCCCCeEecCCEEEEeCCHHHHHHHHHHHHhhCCcccccCCCCCCCceEEEEEEEEeC-----C---cceeEEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999753 1 2579999999
Q ss_pred ccCCCcccCCC-CchhhHHHHHHhhhhHHHHHHHHHHHhhCCCCCCCCCCccccccccc-cCCCceeeEEeecCCCCCCh
Q 004356 154 LAGSENISRSG-AREGRAREAGEINKSLLTLGRVINALVEHSGHVPYRDSKLTRLLRDS-LGGKTKTCIIATVSPSIHCL 231 (759)
Q Consensus 154 LAGSEr~~ks~-a~g~r~kEa~~INkSLlaLg~VI~aL~~~~~hIPYRdSKLTrLLqds-LGGnskT~mIatVSP~~~~~ 231 (759)
||||||..+++ +.+.+.+|+.+||+||++||+||.||+.+..|||||||||||||||| |||||+|+|||||||+..++
T Consensus 307 LAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~~hIPYRdSKLTrLLqdsllGgnskT~mIa~iSP~~~~~ 386 (410)
T 1v8k_A 307 LAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSC 386 (410)
T ss_dssp CCCCCC------------TTHHHHHHHHHHHHHHHHHHTC------CCCCHHHHHTTHHHHSSSEEEEEEEEECCBGGGH
T ss_pred CCCccccccccccccchhHHHHHHhHHHHHHHHHHHHHhcCCCCCCcccchhHHHHhhcccCCCceEEEEEEeCCccccH
Confidence 99999998886 46778899999999999999999999999999999999999999999 69999999999999999999
Q ss_pred HhHHHHHHHHHHhccCccccc
Q 004356 232 EETLSTLDYAHRAKNIKNKPE 252 (759)
Q Consensus 232 eETlsTL~fA~rak~Ikn~p~ 252 (759)
+||++||+||.|||+|..+|.
T Consensus 387 ~ETlsTLrfA~rak~i~~~~~ 407 (410)
T 1v8k_A 387 EYTLNTLRYADRVKELSHHHH 407 (410)
T ss_dssp HHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHhccCCCCCC
Confidence 999999999999999999885
No 26
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=100.00 E-value=1.7e-59 Score=520.54 Aligned_cols=233 Identities=37% Similarity=0.595 Sum_probs=194.8
Q ss_pred CCCCCCCCCCCCCCCcHHHHHHHHHHHHhh---cCCeEEEEEEEEEEEcCceeecCCCCCCCccccCCCCCCeeEEecCC
Q 004356 3 GGARKKNGEFPSDAGVIPRAVKQIFDILEA---QHAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALMEDGK 79 (759)
Q Consensus 3 G~~~~~~g~~~~~~GIIPRal~~LF~~l~~---~~~~~sV~vS~lEIYnE~v~DLL~~~~~~~~~~~~~~~~l~i~ed~~ 79 (759)
|++++..| .+.++|||||++.+||+.+.. .+.+|.|+|||+|||||.|+|||++.. ...++.+.+++.
T Consensus 151 GKTyTM~G-~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~--------~~~~i~~~~~~~ 221 (412)
T 3u06_A 151 GKTYTMDG-VPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQ--------KDMEIRMAKNNK 221 (412)
T ss_dssp SHHHHHTE-ETTEECHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEETTCCSC--------CCCCEEECSSCT
T ss_pred CCeeEecC-CCCCCccHHHHHHHHHHhhhhhcccCceEEEEEEEEEEeCCeeEEcCCCCC--------CCceeeeeecCC
Confidence 44444455 477899999999999999875 356999999999999999999997643 123466667889
Q ss_pred CCeEecCcEEEEecCHHHHHHHHHhchhccccccccccCCCCCcceEEEEEEEEeecCCCCCcceEEeeeccccccCCCc
Q 004356 80 GGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSEN 159 (759)
Q Consensus 80 ~gv~V~gL~e~~V~s~~e~~~lL~~G~~~R~~~~T~~N~~SSRSH~IftI~v~~~~~~~~~~~~~~~skL~lVDLAGSEr 159 (759)
++++|.|++++.|.++++++.+|..|..+|++++|.||..|||||+||+|+|....... .....|+|+|||||||||
T Consensus 222 ~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~---~~~~~~kL~lVDLAGSEr 298 (412)
T 3u06_A 222 NDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEK---QEISVGSINLVDLAGSES 298 (412)
T ss_dssp TSEEETTCCCEECCSHHHHHHHHHHHHHHCC-----CHHHHTTCEEEEEEEEEEEETTT---TEEEEEEEEEEECCCCCC
T ss_pred CCEEEcceEEEEeCCHHHHHHHHHHHHhcccccccCCCCCCcCceEEEEEEEEEEeCCC---CCEEEEEEEEEECCCCCc
Confidence 99999999999999999999999999999999999999999999999999998765332 235789999999999998
Q ss_pred ccCCCCchhhHHHHHHhhhhHHHHHHHHHHHhhCCCCCCCCCCccccccccccCCCceeeEEeecCCCCCChHhHHHHHH
Q 004356 160 ISRSGAREGRAREAGEINKSLLTLGRVINALVEHSGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLSTLD 239 (759)
Q Consensus 160 ~~ks~a~g~r~kEa~~INkSLlaLg~VI~aL~~~~~hIPYRdSKLTrLLqdsLGGnskT~mIatVSP~~~~~eETlsTL~ 239 (759)
.. .+.|++||.+||+||++||+||.||+.+..|||||||||||||||||||||+|+|||||||+..+++||++||+
T Consensus 299 ~~----~~~rl~E~~~INkSL~aLg~vI~aL~~~~~hiPyRdSkLT~LLqdsLgGnskt~mI~~vsP~~~~~~ETl~TLr 374 (412)
T 3u06_A 299 PK----TSTRMTETKNINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLR 374 (412)
T ss_dssp --------------CTTTHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHHGGGTSTTCEEEEEEEECCBGGGHHHHHHHHH
T ss_pred CC----ccchhHhHHHHhHHHHHHHHHHHHHhccCCCCCccccHHHHHHHHhcCCCceEEEEEEeCCChhhHHHHHHHHH
Confidence 74 46899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCcccc
Q 004356 240 YAHRAKNIKNKP 251 (759)
Q Consensus 240 fA~rak~Ikn~p 251 (759)
||.|+++|+..|
T Consensus 375 fA~rv~~i~~~~ 386 (412)
T 3u06_A 375 FAASVNSCKMTK 386 (412)
T ss_dssp HHHHHHHHCC--
T ss_pred HHHHHhhccccc
Confidence 999999998654
No 27
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=100.00 E-value=1.2e-58 Score=503.34 Aligned_cols=225 Identities=32% Similarity=0.467 Sum_probs=176.9
Q ss_pred CCCCCCCCCC-----CCCCCcHHHHHHHHHHHHhhcC----CeEEEEEEEEEEEcCceeecCCCCCCCccccCCCCCCee
Q 004356 3 GGARKKNGEF-----PSDAGVIPRAVKQIFDILEAQH----AEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIA 73 (759)
Q Consensus 3 G~~~~~~g~~-----~~~~GIIPRal~~LF~~l~~~~----~~~sV~vS~lEIYnE~v~DLL~~~~~~~~~~~~~~~~l~ 73 (759)
|++++.+|.. +.++|||||++++||+.+.... ..|.|+|||+|||||.|+|||++.+.. +
T Consensus 107 GKTyTM~g~~~~~~~~~~~GIipra~~~LF~~i~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~---------~-- 175 (344)
T 3dc4_A 107 GKSYSMGMTPPGEILPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLGSTPHM---------P-- 175 (344)
T ss_dssp SHHHHHTCSCGGGSCGGGCCHHHHHHHHHHHHHHHSSSSCSSCCEEEEEEEEEESSCEEETTSSCTTS---------B--
T ss_pred CCCeEEcCCCCCCCCcccCCcHHHHHHHHHHHHHhhhhccccceEEEEEEEEEeCCeeEEccCCCCCC---------c--
Confidence 4444444442 4678999999999999997542 369999999999999999999875421 1
Q ss_pred EEecCCCCeEecCcEEEEecCHHHHHHHHHhchhccccccccccCCCCCcceEEEEEEEEeecCCCCCcceEEeeecccc
Q 004356 74 LMEDGKGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVD 153 (759)
Q Consensus 74 i~ed~~~gv~V~gL~e~~V~s~~e~~~lL~~G~~~R~~~~T~~N~~SSRSH~IftI~v~~~~~~~~~~~~~~~skL~lVD 153 (759)
..+..+.|++++.|.|++|++.+|..|..+|++++|.||..|||||+||+|+|... ...|+|+|||
T Consensus 176 -----~~~~~~~~~~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~Ifti~v~~~---------~~~skl~lVD 241 (344)
T 3dc4_A 176 -----MVAARCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSK---------THHSRMNIVD 241 (344)
T ss_dssp -----CCSSTTTCSCCEECSSHHHHHHHHHHHHHTCC----------CCEEEEEEEEEECS---------SCEEEEEEEE
T ss_pred -----cccccccCceecccCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEec---------CcEEEEEEEE
Confidence 11223568999999999999999999999999999999999999999999999642 2469999999
Q ss_pred ccCCCcccCCCCchhhHHHHHHhhhhHHHHHHHHHHHhhCCCCCCCCCCccccccccccCCCceeeEEeecCCCCCChHh
Q 004356 154 LAGSENISRSGAREGRAREAGEINKSLLTLGRVINALVEHSGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEE 233 (759)
Q Consensus 154 LAGSEr~~ks~a~g~r~kEa~~INkSLlaLg~VI~aL~~~~~hIPYRdSKLTrLLqdsLGGnskT~mIatVSP~~~~~eE 233 (759)
||||||.+++++.|.|++||.+||+||++||+||.||+.+..|||||||||||||||+||||++|+|||||||+..+++|
T Consensus 242 LAGSEr~~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~~~~hiPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~E 321 (344)
T 3dc4_A 242 LAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGHTVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSE 321 (344)
T ss_dssp CCCCCCC-------------CCSCCHHHHHHHHHHHHHTTCSSCCGGGSHHHHHTTTTSSTTCEEEEEEEECCCGGGHHH
T ss_pred CCCCccccccccccchhHHHHHHhHhHHHHHHHHHHHhccCCcCCccccHHHHHHHHHhCCCCEEEEEEEeCCchhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCccccc
Q 004356 234 TLSTLDYAHRAKNIKNKPE 252 (759)
Q Consensus 234 TlsTL~fA~rak~Ikn~p~ 252 (759)
|++||+||+||+.....|.
T Consensus 322 TlsTL~fA~ra~~~~~~~~ 340 (344)
T 3dc4_A 322 TLSTLRFGTSAKAAALEHH 340 (344)
T ss_dssp HHHHHHHHHHHHHHTTTC-
T ss_pred HHHHHHHHHHHhhcCCCCC
Confidence 9999999999999877664
No 28
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=100.00 E-value=6e-57 Score=533.54 Aligned_cols=233 Identities=37% Similarity=0.549 Sum_probs=187.2
Q ss_pred CCCCCCCCCCCCCCCcHHHHHHHHHHHHhh---cCCeEEEEEEEEEEEcCceeecCCCCCCCccccCCCCCCeeEEe-cC
Q 004356 3 GGARKKNGEFPSDAGVIPRAVKQIFDILEA---QHAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALME-DG 78 (759)
Q Consensus 3 G~~~~~~g~~~~~~GIIPRal~~LF~~l~~---~~~~~sV~vS~lEIYnE~v~DLL~~~~~~~~~~~~~~~~l~i~e-d~ 78 (759)
|+++|..| +++|||||++++||+.++. .+..|+|+|||+|||||.|+|||+|... ....+.+++ +.
T Consensus 475 GKT~Tm~g---~~~Giipr~~~~lf~~~~~~~~~~~~~~v~~s~~Eiyne~i~DLl~~~~~-------~~~~~~~~~~~~ 544 (715)
T 4h1g_A 475 GKTFTMSH---PTNGMIPLSLKKIFNDIEELKEKGWSYTVRGKFIEIYNEAIVDLLNPKID-------PNTKYEIKHDDI 544 (715)
T ss_dssp SHHHHHHC---TTTSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEESSSCCCC-------TTCCCCEEEETT
T ss_pred chhhccCC---CCCCcHHHHHHHHHHHHHHhhcCCceEEEEEEEEEEECCEEEECCCCCCC-------CCCcceeEEecC
Confidence 44444444 4679999999999999875 3458999999999999999999987531 223456655 45
Q ss_pred CCCeEecCcEEEEecCHHHHHHHHHhchhccccccccccCCCCCcceEEEEEEEEeecCCCCCcceEEeeeccccccCCC
Q 004356 79 KGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSE 158 (759)
Q Consensus 79 ~~gv~V~gL~e~~V~s~~e~~~lL~~G~~~R~~~~T~~N~~SSRSH~IftI~v~~~~~~~~~~~~~~~skL~lVDLAGSE 158 (759)
.|+++|.||+++.|.|+++++.+|..|..+|++++|.||.+|||||+||+|+|.+...... ..+.|+|+||||||||
T Consensus 545 ~g~~~v~~l~~~~v~~~~~~~~~~~~g~~~r~~~~t~~n~~ssRSH~i~~i~~~~~~~~~~---~~~~~~l~lvDLAGsE 621 (715)
T 4h1g_A 545 AGKTTVTNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSIFIIDLQGYNSLTK---ESSYGTLNLIDLAGSE 621 (715)
T ss_dssp TTEEEETTCCCEECSCHHHHHHHHHHHHCC----------CGGGSEEEEEEEEEEEETTTC---CEEEEEEEEEECCCCC
T ss_pred CCCEEEeCCEEEEcCCHHHHHHHHHHHHhccCcccccccCccccccEEEEEEEEEEecCCC---CEeEEEEEEEeCCCcc
Confidence 6679999999999999999999999999999999999999999999999999987654332 3578999999999999
Q ss_pred cccCCCCchhhHHHHHHhhhhHHHHHHHHHHHhhC-CCCCCCCCCccccccccccCCCceeeEEeecCCCCCChHhHHHH
Q 004356 159 NISRSGAREGRAREAGEINKSLLTLGRVINALVEH-SGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLST 237 (759)
Q Consensus 159 r~~ks~a~g~r~kEa~~INkSLlaLg~VI~aL~~~-~~hIPYRdSKLTrLLqdsLGGnskT~mIatVSP~~~~~eETlsT 237 (759)
|++++++.|.|++|+.+||+||++||+||.+|+.+ .+|||||||||||||||||||||+|+|||||||+..+++||++|
T Consensus 622 r~~~~~~~g~~~~E~~~IN~sL~~L~~vi~al~~~~~~~vpyR~SkLT~lL~~slggn~~t~~i~~isp~~~~~~et~~t 701 (715)
T 4h1g_A 622 RLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNLKDGSHVPYRNSKLTYLLKHSLGGNSKTLMFVNISPLTKDLNETINS 701 (715)
T ss_dssp C---------CHHHHHHHHHHHHHHHHHHHHHHHCSCCCCCGGGCHHHHHTGGGTSTTCEEEEEEEECCBGGGHHHHHHH
T ss_pred cccccCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCCCccCHHHHHHHhhcCCCceEEEEEEECCChhhHHHHHHH
Confidence 99999999999999999999999999999999865 58999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCc
Q 004356 238 LDYAHRAKNIK 248 (759)
Q Consensus 238 L~fA~rak~Ik 248 (759)
|+||+|||+|+
T Consensus 702 L~fa~r~~~i~ 712 (715)
T 4h1g_A 702 LRFATKVNNTR 712 (715)
T ss_dssp HHHHHHHCC--
T ss_pred HHHHHHhccce
Confidence 99999999997
No 29
>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.97 E-value=1.9e-32 Score=246.72 Aligned_cols=99 Identities=47% Similarity=0.637 Sum_probs=93.9
Q ss_pred HHHhhhhHHHHHHHHHHHhhC-CCCCCCCCCccccccccccCCCceeeEEeecCCCCCChHhHHHHHHHHHHhccCcccc
Q 004356 173 AGEINKSLLTLGRVINALVEH-SGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLSTLDYAHRAKNIKNKP 251 (759)
Q Consensus 173 a~~INkSLlaLg~VI~aL~~~-~~hIPYRdSKLTrLLqdsLGGnskT~mIatVSP~~~~~eETlsTL~fA~rak~Ikn~p 251 (759)
|++||+||++||+||.+|+++ ..|||||||||||||+|+||||++|+|||||||+..+++||++||+||.||+.|+|+|
T Consensus 1 a~~IN~SL~~Lg~vI~aL~~~~~~hvPyRdSkLT~lL~dsLgGnskt~mi~~vsp~~~~~~ETl~TL~fA~rak~i~~~~ 80 (100)
T 2kin_B 1 AKNINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTV 80 (100)
T ss_dssp CCBSSHHHHHHHHHHHHHHHTCCSSCCGGGCHHHHHTHHHHHSSEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCEEEE
T ss_pred CCcchHHHHHHHHHHHHHHhcCCCCCCCccchHHHHHHHHhcCCCceeEEEEeCcccchHHHHHHHHHHHHHHHhccCcc
Confidence 357999999999999999997 6899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchHHHHHHHHHHHH
Q 004356 252 EINQKMMKSAMIKDLYSEID 271 (759)
Q Consensus 252 ~vN~~~~~~~li~~l~~Ei~ 271 (759)
.+|..+....++++|.+||+
T Consensus 81 ~~n~~~~~~~l~~~~~~e~~ 100 (100)
T 2kin_B 81 SVNLELTAEEWKKKYEKEKE 100 (100)
T ss_dssp CCEEECCHHHHHHHHHHHHC
T ss_pred eeccCCCHHHHHHHHHHhhC
Confidence 99999988889998887763
No 30
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.96 E-value=1.8e-29 Score=234.24 Aligned_cols=97 Identities=47% Similarity=0.655 Sum_probs=89.2
Q ss_pred hhhHHHHHHHHHHHhhCC-CCCCCCCCccccccccccCCCceeeEEeecCCCCCChHhHHHHHHHHHHhccCcccccccc
Q 004356 177 NKSLLTLGRVINALVEHS-GHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLSTLDYAHRAKNIKNKPEINQ 255 (759)
Q Consensus 177 NkSLlaLg~VI~aL~~~~-~hIPYRdSKLTrLLqdsLGGnskT~mIatVSP~~~~~eETlsTL~fA~rak~Ikn~p~vN~ 255 (759)
|+||++||+||.+|+++. +|||||||||||||+|+|||||+|+|||||||+..+++||++||+||.||+.|+|+|.+|.
T Consensus 1 N~SL~~Lg~vi~aL~~~~~~hvPyRdSkLT~lL~dsLggn~~t~~i~~isp~~~~~~eTl~TL~fa~rak~i~n~~~~n~ 80 (117)
T 3kin_B 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVSVNL 80 (117)
T ss_dssp CCHHHHHHHHHHHHHHSCCSSCCGGGSHHHHHTHHHHHSSSEEEEEEEECCSGGGHHHHHHHHHHHHHHTTCEEEECCCB
T ss_pred CCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHcCCCccceeeeeeCCCcccHHHHHHHHHHHHHhCcccCCceecC
Confidence 899999999999999974 6999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHH
Q 004356 256 KMMKSAMIKDLYSEIDRL 273 (759)
Q Consensus 256 ~~~~~~li~~l~~Ei~~L 273 (759)
.+....+++.|..+++++
T Consensus 81 ~~~~~~l~~~~~~e~~~~ 98 (117)
T 3kin_B 81 ELTAEEWKKKYEKEKEKN 98 (117)
T ss_dssp CCCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHH
Confidence 987777776665555444
No 31
>2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae}
Probab=98.23 E-value=2.6e-07 Score=96.81 Aligned_cols=188 Identities=11% Similarity=0.148 Sum_probs=115.0
Q ss_pred CCcHHHHHHHHHHHHhh-cCCeEEEEEEEEEEE-cCceeecCCCCCCCccccCCCCCCeeEEecCCCCeEecCcEEEEec
Q 004356 16 AGVIPRAVKQIFDILEA-QHAEYSMKVTFLELY-NEEISDLLALEETSKFVDDKSKKPIALMEDGKGGVFVRGLEEEIVT 93 (759)
Q Consensus 16 ~GIIPRal~~LF~~l~~-~~~~~sV~vS~lEIY-nE~v~DLL~~~~~~~~~~~~~~~~l~i~ed~~~gv~V~gL~e~~V~ 93 (759)
.|=.||++..+|...+. ....|.+.+||+||| ||.++|||...+. ...+.|+.+..|+++|.|++.+.|.
T Consensus 104 sGKT~ral~q~f~~~~~~~~~~Y~~tlq~veLy~Ne~~~DLL~~~~~--------~~k~eIk~~~~g~~iv~~s~~i~V~ 175 (298)
T 2o0a_A 104 HGSLRESLIKFLAEKDTIYQKQYVITLQFVFLSDDEFSQDMLLDYSH--------NDKDSIKLKFEKHSISLDSKLVIIE 175 (298)
T ss_dssp CHHHHHHHHHHHHSTTSHHHHHEEEEEEEEEEECC-CEEETTSCCC--------------CEEEECSSCEEEESCCEEES
T ss_pred CCccHHHHHHHHHHhhhhcccceEEEEEEEEEecCCchHHhcCCCCC--------CCcceEEecCCCCEEecccEEEEcc
Confidence 45559999999997643 337999999999999 9999999974331 1245777778899999999999999
Q ss_pred C-HHHHHHHHHhchhccccccccccCCCCCcceEEEEEEEEeecCCCCCcceEEeeeccccccCCCcccCCCCchhhHHH
Q 004356 94 T-ADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSENISRSGAREGRARE 172 (759)
Q Consensus 94 s-~~e~~~lL~~G~~~R~~~~T~~N~~SSRSH~IftI~v~~~~~~~~~~~~~~~skL~lVDLAGSEr~~ks~a~g~r~kE 172 (759)
+ ++|+..++..+...+ .|. +.-.|..+.+..++..-++.+-...--++|+.+.-.
T Consensus 176 ~~~edv~~~~~~~~~~~------~~~---~gi~i~k~~~~~~~~~~~~~~~~~~~d~yf~e~~~~--------------- 231 (298)
T 2o0a_A 176 NGLEDLPLNFSCDEHPN------LPH---SGMGIIKVQFFPRDSKSDGNNDPVPVDFYFIELNNL--------------- 231 (298)
T ss_dssp SGGGGSCTTTTCC----------------CEEEEEEEEEEESCC-------CCCEEEEEEEECSH---------------
T ss_pred ccHHHHHHHhhcccccc------cCC---CCceEEEEEEecCcccccccCCCCceEEEEEEeCCH---------------
Confidence 9 999988884333221 111 234566666654332222221111234677776321
Q ss_pred HHHhhhhHHHHHHHHHHHhhCCCCCCCCCCccccccccccCCCceeeEEeecCCCCCChHhHHHHHHHHHHhccCccccc
Q 004356 173 AGEINKSLLTLGRVINALVEHSGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLSTLDYAHRAKNIKNKPE 252 (759)
Q Consensus 173 a~~INkSLlaLg~VI~aL~~~~~hIPYRdSKLTrLLqdsLGGnskT~mIatVSP~~~~~eETlsTL~fA~rak~Ikn~p~ 252 (759)
++...|.+. +..+ .+-.|+++-+|+--|- .+|.|+++++..+.. --.-|..+++...++|...
T Consensus 232 -----~~~~~l~~~---~~~~----~~~~spi~~il~~ll~-~tks~~~~~l~~~~~----~~~lL~~s~~i~~~~~~~~ 294 (298)
T 2o0a_A 232 -----KSIEQFDKS---IFKK----ESCETPIALVLKKLIS-DTKSFFLLNLNDSKN----VNKLLTISEEVQTQLCKRK 294 (298)
T ss_dssp -----HHHHHHHHH---HHTC-----CCCSHHHHHHHHHHH-HSBCEEEEEECCGGG----HHHHHHHHHHHHHHTC---
T ss_pred -----HHHHHHHhh---cccc----cccCCcHHHHHHHHHh-cCcceEEEEecCCCc----hhHHHHHHHHhhcccCccc
Confidence 122233332 2222 3456888888876664 589999999986543 3347888888888887543
No 32
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=97.04 E-value=0.2 Score=52.59 Aligned_cols=31 Identities=6% Similarity=0.125 Sum_probs=15.1
Q ss_pred hHHhhHhhHHHHHHHHHHHHHHHHHhhHHHH
Q 004356 504 NSRSTFGDLNSEVSKHSHALEDLFKGIASEA 534 (759)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (759)
......+++.+-+..++..+...+.-.+.++
T Consensus 118 ~L~Py~eelr~k~~~~leeLr~~l~P~ae~~ 148 (273)
T 3s84_A 118 RLTPYADEFKVKIDQTVEELRRSLAPYAQDT 148 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHGGGCSSC
T ss_pred HhHhHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 3334445555555555555555554444333
No 33
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=96.72 E-value=0.0044 Score=77.38 Aligned_cols=38 Identities=13% Similarity=0.128 Sum_probs=22.6
Q ss_pred CCcHHHHHHHHHHHHhhc---C-CeEEEEEEEEEEEcCceee
Q 004356 16 AGVIPRAVKQIFDILEAQ---H-AEYSMKVTFLELYNEEISD 53 (759)
Q Consensus 16 ~GIIPRal~~LF~~l~~~---~-~~~sV~vS~lEIYnE~v~D 53 (759)
.+|.-|.+.+|-..|... . ......|..+.||.=++++
T Consensus 431 k~lY~~lF~wlv~~iN~~l~~~~~~~~~~IgvLDi~GFE~f~ 472 (1184)
T 1i84_S 431 KAKFERLFRWILTRVNKALDKTKRQGASFLGILDIAGFEIFE 472 (1184)
T ss_dssp HHHHHHHHHHHHHHHTTTCC------CEEEEEEECCCCCCCS
T ss_pred HHHHHHHHHHHHHHHHHhhCCCccCCcceEEEeecCCcCCCC
Confidence 366677777777777542 1 2244567778888666555
No 34
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=96.57 E-value=0.006 Score=76.15 Aligned_cols=9 Identities=11% Similarity=0.180 Sum_probs=5.5
Q ss_pred cCceeecCC
Q 004356 48 NEEISDLLA 56 (759)
Q Consensus 48 nE~v~DLL~ 56 (759)
|..+.||+.
T Consensus 520 n~~~~~lie 528 (1184)
T 1i84_S 520 LQPCIELIE 528 (1184)
T ss_dssp CHHHHHTTS
T ss_pred cHHHHHHHh
Confidence 445667775
No 35
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=96.51 E-value=0.75 Score=45.59 Aligned_cols=118 Identities=17% Similarity=0.159 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHH
Q 004356 311 ELESESKDKQLMELQELYNSQLLLTAELSEKLEKTEKK----LEETEHALSDLEEKHRQANATIKEKDFLIANLLKSEKA 386 (759)
Q Consensus 311 ~~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~----l~~~~~~l~~~e~~~~~~~~~l~e~e~~i~~l~~~e~~ 386 (759)
+..++..+++...|+.....+..+...++.++.....+ +..++..+..+......++..+.+.+..-..+....-.
T Consensus 48 E~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~ 127 (189)
T 2v71_A 48 EAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRA 127 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 34455555555666666655555555566665555544 45555555555555555665555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHH
Q 004356 387 LVERAIELRTELENAASDVSNLFAKIERKDKIEEGNRILIQM 428 (759)
Q Consensus 387 l~~~~~~l~~~l~~~~~~~~~L~~ki~~k~~~~~~n~~~~~~ 428 (759)
...-...+...++...+.+.-|...+++|..+....+.+.++
T Consensus 128 ~~~SleD~e~kln~aiEr~alLE~El~EKe~l~~~~QRLkdE 169 (189)
T 2v71_A 128 TIMSLEDFEQRLNQAIERNAFLESELDEKESLLVSVQRLKDE 169 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556777788888888888888888887776666554433
No 36
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=96.36 E-value=1.3 Score=46.46 Aligned_cols=22 Identities=14% Similarity=0.338 Sum_probs=5.6
Q ss_pred HHHHHHHhHHhhhHhHHHHhhh
Q 004356 646 AVQDLRESASSRTSQLQKEMST 667 (759)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~s~ 667 (759)
.+..||..+......++.+++-
T Consensus 239 ~~e~l~~~l~~~~~~~~~~~~~ 260 (273)
T 3s84_A 239 QMEQLRQKLGPHAGDVEGHLSF 260 (273)
T ss_dssp HHHHHHHHHSCC----------
T ss_pred HHHHHHHHhCcchhhHHhhhhH
Confidence 3344554444444444444443
No 37
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=95.12 E-value=3.5 Score=42.39 Aligned_cols=40 Identities=13% Similarity=0.075 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhH
Q 004356 333 LLTAELSEKLEKTEKKLEETEHALSDLEEKHRQANATIKE 372 (759)
Q Consensus 333 ~~~~~l~~~l~~~~~~l~~~~~~l~~~e~~~~~~~~~l~e 372 (759)
.+..++...+..+...+...+..+.+++......+..+..
T Consensus 32 ~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~ 71 (256)
T 3na7_A 32 KDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQD 71 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444433333
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=94.31 E-value=1.1 Score=51.07 Aligned_cols=31 Identities=6% Similarity=0.152 Sum_probs=13.9
Q ss_pred EeecCCCCCChHhHHHHHHHHHHhccCcccc
Q 004356 221 IATVSPSIHCLEETLSTLDYAHRAKNIKNKP 251 (759)
Q Consensus 221 IatVSP~~~~~eETlsTL~fA~rak~Ikn~p 251 (759)
+||-.+....+...+..+.....+......|
T Consensus 391 ~cc~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 421 (597)
T 3oja_B 391 LCCKESDKPYLDRLLQYIALTSVVEKVQRAQ 421 (597)
T ss_dssp EEEECCSSHHHHHHHHHHHHHHHHHTC----
T ss_pred ccccCCCccchhHHHHHhhHHHHhhcccccc
Confidence 3444444444555555666555555544433
No 39
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=94.15 E-value=4.9 Score=39.75 Aligned_cols=25 Identities=12% Similarity=0.158 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 339 SEKLEKTEKKLEETEHALSDLEEKH 363 (759)
Q Consensus 339 ~~~l~~~~~~l~~~~~~l~~~e~~~ 363 (759)
...|..+++....+...+..+..++
T Consensus 48 E~eL~~~Ek~~~~L~~~~~~L~~E~ 72 (189)
T 2v71_A 48 EAQLVQAEQRNRDLQADNQRLKYEV 72 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444333333333333333
No 40
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=92.82 E-value=16 Score=50.12 Aligned_cols=9 Identities=22% Similarity=0.741 Sum_probs=6.2
Q ss_pred HHhHHHHHH
Q 004356 676 KAEWSAHMN 684 (759)
Q Consensus 676 k~~~~~~~~ 684 (759)
..+|+.|..
T Consensus 2500 ~~E~~flL~ 2508 (3245)
T 3vkg_A 2500 ESEWDFLLK 2508 (3245)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 457888775
No 41
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=92.03 E-value=4.7 Score=49.85 Aligned_cols=38 Identities=13% Similarity=0.178 Sum_probs=24.0
Q ss_pred CCcHHHHHHHHHHHHhhc---CCeEEEEEEEEEEEcCceee
Q 004356 16 AGVIPRAVKQIFDILEAQ---HAEYSMKVTFLELYNEEISD 53 (759)
Q Consensus 16 ~GIIPRal~~LF~~l~~~---~~~~sV~vS~lEIYnE~v~D 53 (759)
.+|.-|.+.+|-..|... .......|..+.||.=++++
T Consensus 405 k~lY~~LF~wlV~~iN~~l~~~~~~~~~IgvLDI~GFE~f~ 445 (1080)
T 2dfs_A 405 KHIYANLFNWIVDHVNKALHSTVKQHSFIGVLDIYGFETFE 445 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSSCCCEEEEEEEECCCCCCS
T ss_pred HHHHHHHHHHHHHHHHHhhccccccCceEEeeccCCccccC
Confidence 366677777777777642 22234567778888766655
No 42
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=92.03 E-value=6 Score=40.44 Aligned_cols=14 Identities=21% Similarity=0.247 Sum_probs=5.4
Q ss_pred hHHHHHHhHHHHHH
Q 004356 583 TLDMHASNLTKIVE 596 (759)
Q Consensus 583 ~~~~~~~~l~~~~~ 596 (759)
++...+..|+..+.
T Consensus 195 kl~~~~e~lr~~l~ 208 (243)
T 2a01_A 195 KATEHLSTLSEKAK 208 (243)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhH
Confidence 33333344443333
No 43
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=91.61 E-value=7.7 Score=35.20 Aligned_cols=30 Identities=13% Similarity=0.209 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 004356 390 RAIELRTELENAASDVSNLFAKIERKDKIE 419 (759)
Q Consensus 390 ~~~~l~~~l~~~~~~~~~L~~ki~~k~~~~ 419 (759)
-...+.+.++...+...-|..++++|..+.
T Consensus 78 SLeD~E~k~n~aiErnalLE~El~EKe~L~ 107 (111)
T 2v66_B 78 SLEDFEQRLNQAIERNAFLESELDEKESLL 107 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335566666777777777888888776654
No 44
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=91.29 E-value=7.3 Score=48.19 Aligned_cols=9 Identities=44% Similarity=0.279 Sum_probs=4.6
Q ss_pred CCCceeeEE
Q 004356 213 GGKTKTCII 221 (759)
Q Consensus 213 GGnskT~mI 221 (759)
-|.+|.+|=
T Consensus 744 ~G~TKVF~r 752 (1080)
T 2dfs_A 744 FGKTKIFFR 752 (1080)
T ss_dssp ECSSEEEEC
T ss_pred eccccchhc
Confidence 355555553
No 45
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=89.65 E-value=16 Score=35.50 Aligned_cols=22 Identities=14% Similarity=0.220 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 004356 392 IELRTELENAASDVSNLFAKIE 413 (759)
Q Consensus 392 ~~l~~~l~~~~~~~~~L~~ki~ 413 (759)
..++..+.....+...|.+++-
T Consensus 107 ~~~k~~~~k~~~e~r~L~Ekl~ 128 (168)
T 3o0z_A 107 KHLKHNLEKVEGERKEAQDMLN 128 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433
No 46
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=88.64 E-value=9.6 Score=43.22 Aligned_cols=12 Identities=33% Similarity=0.653 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 004356 265 DLYSEIDRLKQE 276 (759)
Q Consensus 265 ~l~~Ei~~Lk~e 276 (759)
++..++..|+.+
T Consensus 460 ~~~~~i~~l~~~ 471 (597)
T 3oja_B 460 ELRAEVQQLTNE 471 (597)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333444444443
No 47
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=87.34 E-value=1.1e+02 Score=42.34 Aligned_cols=13 Identities=23% Similarity=0.475 Sum_probs=9.5
Q ss_pred hCCCcCCcchhHH
Q 004356 283 KNGIYIPRDRYLQ 295 (759)
Q Consensus 283 k~g~~~~~~~~~~ 295 (759)
+...|+++..|.+
T Consensus 1887 ~R~~yvTP~syLe 1899 (3245)
T 3vkg_A 1887 GRQNYVTPRHYLD 1899 (3245)
T ss_dssp SCCCCCCHHHHHH
T ss_pred CCcccCCHHHHHH
Confidence 3457888888875
No 48
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=83.72 E-value=26 Score=31.93 Aligned_cols=80 Identities=21% Similarity=0.312 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 265 DLYSEIDRLKQEVYAAREKNGIYIPRDRYLQEEAEKKAMAEKIERMELESESKDKQLMELQELYNSQLLLTAELSEKLEK 344 (759)
Q Consensus 265 ~l~~Ei~~Lk~el~~~r~k~g~~~~~~~~~~~e~e~~~~~~~i~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~ 344 (759)
-|..+|..|+.++..+... -.++..++.+....+..++.+|+........++..+..
T Consensus 17 ~ye~~I~~LR~qid~~~~e-----------------------~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~ 73 (119)
T 3ol1_A 17 LYEEEMRELRRQVDQLTND-----------------------KARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQS 73 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4566777777776544321 11233344444555666677777666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 004356 345 TEKKLEETEHALSDLEEKHRQAN 367 (759)
Q Consensus 345 ~~~~l~~~~~~l~~~e~~~~~~~ 367 (759)
+++.+....-.-.+++.++..++
T Consensus 74 lrK~lD~~~l~r~dLE~~iesL~ 96 (119)
T 3ol1_A 74 FRQDVDNASLARLDLERKVESLQ 96 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccHHHHHHHHHHHHHHHHH
Confidence 66666555544444444444333
No 49
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=81.57 E-value=30 Score=31.28 Aligned_cols=22 Identities=45% Similarity=0.490 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 004356 262 MIKDLYSEIDRLKQEVYAAREK 283 (759)
Q Consensus 262 li~~l~~Ei~~Lk~el~~~r~k 283 (759)
..++|...+.+|+.++...|.|
T Consensus 4 ~~rdL~~~~~~L~~E~e~~k~K 25 (111)
T 2v66_B 4 RNRDLQADNQRLKYEVEALKEK 25 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777788888887777755
No 50
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=80.89 E-value=34 Score=31.42 Aligned_cols=9 Identities=44% Similarity=0.645 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 004356 266 LYSEIDRLK 274 (759)
Q Consensus 266 l~~Ei~~Lk 274 (759)
+..++..|+
T Consensus 18 ~~eel~~lk 26 (129)
T 2fxo_A 18 MKEEFTRLK 26 (129)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 51
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=80.43 E-value=31 Score=38.96 Aligned_cols=41 Identities=12% Similarity=0.212 Sum_probs=23.6
Q ss_pred HHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 406 SNLFAKIERKDKIEEGNRILIQMFQSQLTQQLEILHKTVAT 446 (759)
Q Consensus 406 ~~L~~ki~~k~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~ 446 (759)
..+.+.+..+......|...+.+|-.+|...+..|+.+|..
T Consensus 88 k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdn 128 (562)
T 3ghg_A 88 TNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIE 128 (562)
T ss_dssp HHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445566666666666666666666665553
No 52
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=80.39 E-value=32 Score=38.79 Aligned_cols=35 Identities=17% Similarity=0.278 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhh
Q 004356 470 AEATEELRGRLGKLKAMYGSGIKALDGIAGELDGN 504 (759)
Q Consensus 470 ~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 504 (759)
.+..++|+.+|.-|+..+++.+..|+.|...|+..
T Consensus 109 nE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq 143 (562)
T 3ghg_A 109 NRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQ 143 (562)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445777777777777777766666666555544
No 53
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=79.53 E-value=29 Score=33.76 Aligned_cols=24 Identities=13% Similarity=0.170 Sum_probs=11.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHH
Q 004356 542 QSSLYKQEEKLTAYAQQQREAHSR 565 (759)
Q Consensus 542 ~~~~~~~~~e~~~~~~~~~~~~~~ 565 (759)
..++.+.+..+.=+..++++....
T Consensus 110 ~~~~e~lr~~l~Py~~el~~~~~~ 133 (185)
T 3r2p_A 110 QEEMELYRQKVEPLRAELQEGARQ 133 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444445555555544443
No 54
>2lem_A Apolipoprotein A-I; lipid transport; NMR {Mus musculus}
Probab=77.44 E-value=31 Score=34.40 Aligned_cols=24 Identities=13% Similarity=0.057 Sum_probs=9.5
Q ss_pred hhhHHhhHhhHHHHHHHHHHHHHH
Q 004356 502 DGNSRSTFGDLNSEVSKHSHALED 525 (759)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~ 525 (759)
..+.....+.|...+..+.+.+..
T Consensus 71 ~~~l~~~~~~lr~~l~kd~ee~r~ 94 (216)
T 2lem_A 71 WDNLEKETDWVRQEMNKDLEEVKQ 94 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHhccHHHHHH
Confidence 333333333444444444444433
No 55
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=76.42 E-value=40 Score=29.76 Aligned_cols=55 Identities=20% Similarity=0.288 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 303 MAEKIERMELESESKDKQLMELQELYNSQLLLTAELSEKLEKTEKKLEETEHALS 357 (759)
Q Consensus 303 ~~~~i~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~l~ 357 (759)
+++++.+++.++...+.++..|...+..........+.....++.+++++...|-
T Consensus 10 lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLF 64 (97)
T 2eqb_B 10 LKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLF 64 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666667777777766666666666666666666666655554
No 56
>2lem_A Apolipoprotein A-I; lipid transport; NMR {Mus musculus}
Probab=73.70 E-value=3 Score=41.97 Aligned_cols=88 Identities=10% Similarity=0.160 Sum_probs=38.7
Q ss_pred hhHHhhHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHhH
Q 004356 503 GNSRSTFGDLNSEVSKHSHALEDLFKGIASEADSLLNDLQSSLYKQEEKLTAYAQQQREAHSRAVENARSV-SKVTVNFF 581 (759)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 581 (759)
.++...++.+...+..+...+..-+...+.++. ..+...+.+.+.-|.-+..+++.+....++..+.. .-+...|.
T Consensus 94 ~~l~py~~el~~~~~~~~e~lr~~L~Py~~el~---~~~~~~~e~Lr~~L~p~~e~lr~kl~~~~e~lk~~l~P~~ee~~ 170 (216)
T 2lem_A 94 QKVQPYLDEFQKKWKEDVELYRQKASPQGAELQ---ESARQKLQELQGRLSPVAEEFRDRMRTHVDSLRTQLAPHSEQMR 170 (216)
T ss_dssp HHTTTTCCHHHHHHHHHHHHHHHHTSCHHHHHH---HHHHCSCCSSCCSCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHH
Confidence 334445555555555555555544443333322 22233333333333444444455555444444332 23344455
Q ss_pred hhHHHHHHhHHH
Q 004356 582 KTLDMHASNLTK 593 (759)
Q Consensus 582 ~~~~~~~~~l~~ 593 (759)
.++...+..|+.
T Consensus 171 ~kl~~~leeL~~ 182 (216)
T 2lem_A 171 ESLAQRLAELKS 182 (216)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC
Confidence 555555555553
No 57
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=72.70 E-value=30 Score=31.70 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=20.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Q 004356 258 MKSAMIKDLYSEIDRLKQEVYAAR 281 (759)
Q Consensus 258 ~~~~li~~l~~Ei~~Lk~el~~~r 281 (759)
..+.+|..|+.||+.|+.++...+
T Consensus 12 ~rD~~Ie~Lkreie~lk~ele~l~ 35 (120)
T 3i00_A 12 EKDHLIERLYREISGLKAQLENMK 35 (120)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999987654
No 58
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=68.23 E-value=89 Score=30.21 Aligned_cols=11 Identities=9% Similarity=0.386 Sum_probs=5.1
Q ss_pred HHHHHHHHHHh
Q 004356 404 DVSNLFAKIER 414 (759)
Q Consensus 404 ~~~~L~~ki~~ 414 (759)
.+.+|..++++
T Consensus 98 ri~~L~~El~~ 108 (168)
T 3o0z_A 98 RITSLQEEVKH 108 (168)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 59
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=65.15 E-value=32 Score=36.38 Aligned_cols=20 Identities=20% Similarity=0.341 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004356 427 QMFQSQLTQQLEILHKTVAT 446 (759)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~ 446 (759)
.+++..+...++.++.++.-
T Consensus 150 ~EL~~~~~~~~eeLr~~L~p 169 (307)
T 2l7b_A 150 RKLRKRLLRDADDLQKRLAV 169 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHhh
Confidence 33334444444444444433
No 60
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=62.67 E-value=1.1e+02 Score=29.22 Aligned_cols=79 Identities=16% Similarity=0.275 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 265 DLYSEIDRLKQEVYAAREKNGIYIPRDRYLQEEAEKKAMAEKIERMELESESKDKQLMELQELYNSQLLLTAELSEKLEK 344 (759)
Q Consensus 265 ~l~~Ei~~Lk~el~~~r~k~g~~~~~~~~~~~e~e~~~~~~~i~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~ 344 (759)
.|..++..++.++...+.+.+.+ + ...+++..+...+...+.++..|...+..........+.....
T Consensus 17 ~LeD~L~~~R~el~~~~~ri~~l---------E----~~r~~~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ 83 (154)
T 2ocy_A 17 HLEEQLNKSLKTIASQKAAIENY---------N----QLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADK 83 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT---------H----HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH---------H----HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666555432211 1 1122333344444555566666666666655555555555555
Q ss_pred HHHHHHHHHHHH
Q 004356 345 TEKKLEETEHAL 356 (759)
Q Consensus 345 ~~~~l~~~~~~l 356 (759)
++.+++++...|
T Consensus 84 ie~ElEeLTasL 95 (154)
T 2ocy_A 84 LNKEVEDLTASL 95 (154)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555444
No 61
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=62.39 E-value=70 Score=28.53 Aligned_cols=17 Identities=18% Similarity=0.198 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHhHhH
Q 004356 356 LSDLEEKHRQANATIKE 372 (759)
Q Consensus 356 l~~~e~~~~~~~~~l~e 372 (759)
...++..+..++..+.+
T Consensus 67 ~~~L~~~~~~lk~~L~q 83 (103)
T 4h22_A 67 HSILQFQFAEVKEALKQ 83 (103)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 62
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=61.52 E-value=2.3e+02 Score=32.57 Aligned_cols=72 Identities=18% Similarity=0.296 Sum_probs=50.7
Q ss_pred HhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHhhhHhHHHHhhhh
Q 004356 589 SNLTKIVEEAQTVNDQKLFEFEKKFEESAANEERQLLEKVAELLASSNARKKQLVQMAVQDLRESASSRTSQLQKEMSTM 668 (759)
Q Consensus 589 ~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~m 668 (759)
..+...++.-..+....+..++.+. +.||++++.+...+|+.....|..++.. ........|+.++..+
T Consensus 511 ~~~~~~~~~~~~~~~e~~~ql~~km----e~~~~~~~~e~~~~~~~~~~~~~~~~~~-------g~~~~~~~~~~ei~~l 579 (592)
T 1f5n_A 511 RKNEQMMEQKERSYQEHLKQLTEKM----ENDRVQLLKEQERTLALKLQEQEQLLKE-------GFQKESRIMKNEIQDL 579 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 5566666666666666666666655 5678999999999999999999966654 3444556666666666
Q ss_pred hhh
Q 004356 669 QDS 671 (759)
Q Consensus 669 q~~ 671 (759)
+.-
T Consensus 580 ~~~ 582 (592)
T 1f5n_A 580 QTK 582 (592)
T ss_dssp HHH
T ss_pred HHh
Confidence 655
No 63
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=61.48 E-value=4.6 Score=42.93 Aligned_cols=20 Identities=5% Similarity=0.036 Sum_probs=8.2
Q ss_pred hHhhHHHHHHHHHHHHHHHH
Q 004356 508 TFGDLNSEVSKHSHALEDLF 527 (759)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~ 527 (759)
..+++..-+..++.++...+
T Consensus 170 y~eeLr~kl~~~veelr~~L 189 (307)
T 2l7b_A 170 YQAGAREGAERGLSAIRERL 189 (307)
T ss_dssp HTSCCSSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33333334444444444443
No 64
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=60.56 E-value=1.7e+02 Score=31.86 Aligned_cols=43 Identities=16% Similarity=0.243 Sum_probs=25.3
Q ss_pred HHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 405 VSNLFAKIERKDKIEEGNRILIQMFQSQLTQQLEILHKTVATS 447 (759)
Q Consensus 405 ~~~L~~ki~~k~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (759)
+..+.+.+....+....|...+.+|-.+|..++..|+.+|...
T Consensus 90 ~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q 132 (390)
T 1deq_A 90 TKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQ 132 (390)
T ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445555666667777667766666666666543
No 65
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=60.00 E-value=90 Score=27.43 Aligned_cols=7 Identities=29% Similarity=0.477 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 004356 270 IDRLKQE 276 (759)
Q Consensus 270 i~~Lk~e 276 (759)
+.-|+.+
T Consensus 11 m~~lk~e 17 (101)
T 3u1c_A 11 MQMLKLD 17 (101)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 66
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=59.84 E-value=1.9e+02 Score=32.13 Aligned_cols=44 Identities=14% Similarity=0.094 Sum_probs=31.3
Q ss_pred HHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 405 VSNLFAKIERKDKIEEGNRILIQMFQSQLTQQLEILHKTVATSV 448 (759)
Q Consensus 405 ~~~L~~ki~~k~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (759)
+..+.+.+.........|...+.+|-.+|...+..|+.++..-+
T Consensus 88 ~~~~~~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~kVd~qi 131 (491)
T 1m1j_A 88 IVETINILKPGLEGAQQLDENYGHVSTELRRRIVTLKQRVATQV 131 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555566677888888888888888888887777544
No 67
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=59.02 E-value=1.3e+02 Score=28.97 Aligned_cols=20 Identities=15% Similarity=0.373 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004356 429 FQSQLTQQLEILHKTVATSV 448 (759)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~ 448 (759)
++..+...+++++.++.-+.
T Consensus 83 Lr~~l~kdlee~r~~l~P~~ 102 (185)
T 3r2p_A 83 LRQEMSKDLEEVKAKVQPYL 102 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHH
Confidence 33344444555555444443
No 68
>4hpq_C ATG17, KLTH0D15642P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=56.77 E-value=2.3e+02 Score=31.12 Aligned_cols=23 Identities=9% Similarity=0.221 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHH
Q 004356 473 TEELRGRLGKLKAMYGSGIKALD 495 (759)
Q Consensus 473 ~~~l~~~~~~~~~~~~~~~~~i~ 495 (759)
+..+..++..+=.-++.|...+.
T Consensus 199 l~~le~elA~~L~SLT~HyDqC~ 221 (413)
T 4hpq_C 199 ADQLEQELADFLKSFTDHFDKCS 221 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555544444555554444
No 69
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=55.05 E-value=1.3e+02 Score=27.81 Aligned_cols=29 Identities=24% Similarity=0.336 Sum_probs=11.8
Q ss_pred HHHHHHHhHHHHHHhhHHHHHHHHHHHHH
Q 004356 407 NLFAKIERKDKIEEGNRILIQMFQSQLTQ 435 (759)
Q Consensus 407 ~L~~ki~~k~~~~~~n~~~~~~~~~~~~~ 435 (759)
.|.+.+.+|..+-.....++.-++.++.+
T Consensus 102 ELEADLKEKDsMVe~LT~TiG~LrKELEd 130 (167)
T 4gkw_A 102 ELEADLKEKDSMVESLTETIGILRKELEN 130 (167)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 34444444444433333444443333333
No 70
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=54.35 E-value=1.5e+02 Score=28.24 Aligned_cols=30 Identities=30% Similarity=0.446 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 338 LSEKLEKTEKKLEETEHALSDLEEKHRQAN 367 (759)
Q Consensus 338 l~~~l~~~~~~l~~~~~~l~~~e~~~~~~~ 367 (759)
+...|...+..++.....+..++..++.+.
T Consensus 26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~ 55 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELEEELKTVT 55 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444333
No 71
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=54.02 E-value=1.5e+02 Score=27.99 Aligned_cols=61 Identities=21% Similarity=0.284 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 304 AEKIERMELESESKDKQLMELQELYNSQLLLTAELSEKLEKTEKKLEETEHALSDLEEKHR 364 (759)
Q Consensus 304 ~~~i~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~l~~~e~~~~ 364 (759)
.++|+.++..++.......+...+|+.......-+...|.......+.....+..++..++
T Consensus 51 eEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~ 111 (147)
T 2b9c_A 51 EEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELK 111 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455544444433333444444443333333334444443333333333333333333
No 72
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=52.77 E-value=1.1e+02 Score=26.18 Aligned_cols=59 Identities=22% Similarity=0.351 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 310 MELESESKDKQLMELQELYNSQLLLTAELSEKLEKTEKKLEETEHALSDLEEKHRQANA 368 (759)
Q Consensus 310 ~~~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~l~~~e~~~~~~~~ 368 (759)
+..++.+....+..++.+|+.........+..+..+++.+..+.-.-.+++.++..++.
T Consensus 19 l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~e 77 (86)
T 3swk_A 19 VEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQE 77 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566677788888888777778888877777777766666666655555443
No 73
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=49.83 E-value=1.5e+02 Score=27.00 Aligned_cols=17 Identities=18% Similarity=0.292 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004356 352 TEHALSDLEEKHRQANA 368 (759)
Q Consensus 352 ~~~~l~~~e~~~~~~~~ 368 (759)
.+..+..++..+.+++.
T Consensus 82 ~q~~i~~lE~eL~~~r~ 98 (131)
T 3tnu_A 82 IQEMIGSVEEQLAQLRC 98 (131)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444443
No 74
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=49.73 E-value=1.2e+02 Score=25.84 Aligned_cols=18 Identities=6% Similarity=0.252 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004356 395 RTELENAASDVSNLFAKI 412 (759)
Q Consensus 395 ~~~l~~~~~~~~~L~~ki 412 (759)
+.....-.+.+++|..|+
T Consensus 61 k~E~~~wq~Rl~~LLgk~ 78 (81)
T 2jee_A 61 KEQQNGWQERLQALLGRM 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 333333334444444444
No 75
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=47.32 E-value=1.3e+02 Score=25.57 Aligned_cols=42 Identities=24% Similarity=0.224 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Q 004356 337 ELSEKLEKTEKKLEETEHALSDLEEKHRQANATIKEKDFLIA 378 (759)
Q Consensus 337 ~l~~~l~~~~~~l~~~~~~l~~~e~~~~~~~~~l~e~e~~i~ 378 (759)
+|+-++..++.+-.+.+..|..++..+..++..+..++..+.
T Consensus 30 ~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~ 71 (81)
T 3qh9_A 30 HLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIE 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHH
Confidence 344444444444444444455554555555555555444433
No 76
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=45.79 E-value=1.4e+02 Score=25.43 Aligned_cols=36 Identities=22% Similarity=0.301 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 325 QELYNSQLLLTAELSEKLEKTEKKLEETEHALSDLE 360 (759)
Q Consensus 325 ~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~l~~~e 360 (759)
+..++...+-++-+.++|.+.+.....+...|.+.+
T Consensus 16 QSALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae 51 (81)
T 1wt6_A 16 QEALEEEVLTRQSLSREMEAIRTDNQNFASQLREAE 51 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344444444444444444444333
No 77
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=44.96 E-value=3.1e+02 Score=30.10 Aligned_cols=32 Identities=19% Similarity=0.253 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 299 EKKAMAEKIERMELESESKDKQLMELQELYNS 330 (759)
Q Consensus 299 e~~~~~~~i~~~~~~l~~~~~~l~~l~~~~~~ 330 (759)
..+.|.+++..++..+.....++..|+..+..
T Consensus 85 ~skkml~~~~~~e~~~~~~~~~i~~l~~~~~~ 116 (409)
T 1m1j_C 85 KSKKIIEEIIRYENTILAHENTIQQLTDMHIM 116 (409)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh
Confidence 33445556666555555555555555554443
No 78
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=44.41 E-value=3.5e+02 Score=29.53 Aligned_cols=8 Identities=25% Similarity=0.136 Sum_probs=3.4
Q ss_pred HHHHHHHH
Q 004356 265 DLYSEIDR 272 (759)
Q Consensus 265 ~l~~Ei~~ 272 (759)
++..|++.
T Consensus 325 eF~~Eve~ 332 (487)
T 3oja_A 325 TERLECER 332 (487)
T ss_dssp CHHHHHHH
T ss_pred HHHHHHHH
Confidence 34444443
No 79
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=42.98 E-value=79 Score=29.55 Aligned_cols=25 Identities=8% Similarity=-0.061 Sum_probs=11.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhhH
Q 004356 466 VSTKAEATEELRGRLGKLKAMYGSG 490 (759)
Q Consensus 466 ~~~~~~~~~~l~~~~~~~~~~~~~~ 490 (759)
+.........++.+...++..+...
T Consensus 91 Va~ar~~~~~~e~r~~~L~~ql~e~ 115 (135)
T 2e7s_A 91 VADARMEKYAIEILNKRLTEQLREK 115 (135)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444445555555555544443
No 80
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=42.53 E-value=3.6e+02 Score=29.24 Aligned_cols=23 Identities=17% Similarity=0.237 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 004356 391 AIELRTELENAASDVSNLFAKIE 413 (759)
Q Consensus 391 ~~~l~~~l~~~~~~~~~L~~ki~ 413 (759)
...|+..|++...++..|.-+|+
T Consensus 136 ir~Lq~~l~~q~~kiqRLE~~Id 158 (390)
T 1deq_A 136 INLLQKNVRDQLVDMKRLEVDID 158 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566665666666666553
No 81
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=41.97 E-value=71 Score=26.97 Aligned_cols=47 Identities=19% Similarity=0.242 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 303 MAEKIERMELESESKDKQLMELQELYNSQLLLTAELSEKLEKTEKKL 349 (759)
Q Consensus 303 ~~~~i~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l 349 (759)
+..+|..++..+...+..+.+|....-.++++.+.|...+..+...+
T Consensus 12 le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl 58 (78)
T 3efg_A 12 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDL 58 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667777766667777777666666666555555554444433
No 82
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=41.65 E-value=1.6e+02 Score=25.01 Aligned_cols=52 Identities=10% Similarity=0.095 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 004356 319 KQLMELQELYNSQLLLTAELSEKLEKTEKKLEETEHALSDLEEKHRQANATI 370 (759)
Q Consensus 319 ~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~l~~~e~~~~~~~~~l 370 (759)
+++..|+-.......+...++.+|..++.++..++..|..-+..++.++..+
T Consensus 26 qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 26 QELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3444555555555555556677777777777777777777666666655443
No 83
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=38.20 E-value=1.9e+02 Score=24.72 Aligned_cols=25 Identities=24% Similarity=0.248 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 317 KDKQLMELQELYNSQLLLTAELSEK 341 (759)
Q Consensus 317 ~~~~l~~l~~~~~~~~~~~~~l~~~ 341 (759)
+..++..+...+........++...
T Consensus 19 ~eeel~~lke~l~k~e~~rkele~~ 43 (89)
T 3bas_A 19 QLKQMDKMKEDLAKTERIKKELEEQ 43 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444333333333333
No 84
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=38.10 E-value=2.3e+02 Score=25.68 Aligned_cols=18 Identities=28% Similarity=0.505 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004356 351 ETEHALSDLEEKHRQANA 368 (759)
Q Consensus 351 ~~~~~l~~~e~~~~~~~~ 368 (759)
..+..+..++..+.+++.
T Consensus 79 ~~q~~i~~lE~eL~~~r~ 96 (129)
T 3tnu_B 79 DARNKLAELEEALQKAKQ 96 (129)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHH
Confidence 333444444444444443
No 85
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A
Probab=38.04 E-value=5.4e+02 Score=29.94 Aligned_cols=39 Identities=26% Similarity=0.290 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 004356 429 FQSQLTQQLEILHKTVATSVTQQEQQLKDMEEDMQSFVS 467 (759)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (759)
|..++.+..+.+..++...+..|...+..+......|..
T Consensus 606 f~~eL~k~~~~~~~~i~~~~~~Q~~ll~~i~~~~~~f~~ 644 (704)
T 2xs1_A 606 SVTELDRVYGGLTTKVQESLKKQEGLLKNIQVSHQEFSK 644 (704)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555666666666666666666666666666654
No 86
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=37.39 E-value=57 Score=30.49 Aligned_cols=11 Identities=27% Similarity=0.546 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 004356 341 KLEKTEKKLEE 351 (759)
Q Consensus 341 ~l~~~~~~l~~ 351 (759)
....++.++++
T Consensus 68 ~~~~ie~ElE~ 78 (135)
T 2e7s_A 68 EADKLNKEVED 78 (135)
T ss_dssp TTHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 87
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=35.90 E-value=2.2e+02 Score=24.78 Aligned_cols=60 Identities=25% Similarity=0.389 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 297 EAEKKAMAEKIERMELESESKDKQLMELQELYNSQLLLTAELSEKLEKTEKKLEETEHAL 356 (759)
Q Consensus 297 e~e~~~~~~~i~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~l 356 (759)
+.+...+...|..++.....++.+=...-..|.....+..++..++..+...+......|
T Consensus 31 Eke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qL 90 (96)
T 3q8t_A 31 EKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQL 90 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555444444433333334444444444444444444444444443333
No 88
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=35.31 E-value=3e+02 Score=26.15 Aligned_cols=14 Identities=7% Similarity=0.268 Sum_probs=7.9
Q ss_pred HHHHhhHHHHHHHH
Q 004356 417 KIEEGNRILIQMFQ 430 (759)
Q Consensus 417 ~~~~~n~~~~~~~~ 430 (759)
.++.+|..++..|-
T Consensus 121 kLq~EN~~LV~RWM 134 (152)
T 3a7p_A 121 DLKKEHSQLVARWL 134 (152)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 55556666665553
No 89
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=33.20 E-value=3.2e+02 Score=25.94 Aligned_cols=19 Identities=26% Similarity=0.427 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004356 336 AELSEKLEKTEKKLEETEH 354 (759)
Q Consensus 336 ~~l~~~l~~~~~~l~~~~~ 354 (759)
.+|+..|..+...+...+.
T Consensus 16 s~LeD~L~~~R~el~~~~~ 34 (154)
T 2ocy_A 16 SHLEEQLNKSLKTIASQKA 34 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHH
Confidence 3455555555554444433
No 90
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=31.90 E-value=5.9e+02 Score=28.56 Aligned_cols=19 Identities=16% Similarity=0.324 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004356 263 IKDLYSEIDRLKQEVYAAR 281 (759)
Q Consensus 263 i~~l~~Ei~~Lk~el~~~r 281 (759)
+-.++.|+.|.+.....++
T Consensus 11 la~yq~elarvqkana~ak 29 (497)
T 3iox_A 11 LTAYQTELARVQKANADAK 29 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555544433
No 91
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=30.88 E-value=2.3e+02 Score=23.41 Aligned_cols=11 Identities=18% Similarity=0.567 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 004356 319 KQLMELQELYN 329 (759)
Q Consensus 319 ~~l~~l~~~~~ 329 (759)
.++..|.-...
T Consensus 17 ~EI~rLnvlvg 27 (74)
T 2q6q_A 17 NEIFELKKIAE 27 (74)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 92
>3ck6_A Putative membrane transport protein; APC91421.1, ZNTB, cytoplasmic domain, PSI-2, protein structure initiative; HET: MSE; 1.90A {Vibrio parahaemolyticus rimd 2210633} PDB: 3bhc_A*
Probab=30.75 E-value=2.7e+02 Score=27.47 Aligned_cols=29 Identities=10% Similarity=-0.008 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 004356 471 EATEELRGRLGKLKAMYGSGIKALDGIAG 499 (759)
Q Consensus 471 ~~~~~l~~~~~~~~~~~~~~~~~i~~~~~ 499 (759)
..+-.++.++..++..+....+.+..+..
T Consensus 171 ~~l~~lrr~l~~lrr~l~p~r~~l~~L~r 199 (252)
T 3ck6_A 171 YNHIAAQKALISIKRFIRPQQYAIRDLIE 199 (252)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667788888888777776666666644
No 93
>3nvo_A Zinc transport protein ZNTB; alpha-beta-alpha sandwich, zinc efflux system, membrane, TRA protein; 2.30A {Salmonella enterica} PDB: 3nwi_A
Probab=30.56 E-value=1.8e+02 Score=29.01 Aligned_cols=30 Identities=13% Similarity=0.069 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 004356 470 AEATEELRGRLGKLKAMYGSGIKALDGIAG 499 (759)
Q Consensus 470 ~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~ 499 (759)
...+-.++.++..++..+....+.+..+..
T Consensus 186 l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~ 215 (264)
T 3nvo_A 186 RGFLALLRKQLIVMRRYMAPQRDVYARLAS 215 (264)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 344567777777777777766666655543
No 94
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=30.15 E-value=3.6e+02 Score=25.60 Aligned_cols=30 Identities=20% Similarity=0.244 Sum_probs=11.3
Q ss_pred HHHHHHHHHhhhHHhhHhhHHHHHHHHHHH
Q 004356 493 ALDGIAGELDGNSRSTFGDLNSEVSKHSHA 522 (759)
Q Consensus 493 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (759)
.+..-+..++.+..-.-+.+...+......
T Consensus 70 ~l~~~~~~l~~~L~P~t~el~~~l~~~~e~ 99 (165)
T 1gs9_A 70 ELKAYKSELEEQLTPVAEETRARLSKELQA 99 (165)
T ss_dssp HHHHHHHHHTTSCCCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 333333344444333333333333333333
No 95
>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A
Probab=29.80 E-value=4.3e+02 Score=26.35 Aligned_cols=84 Identities=5% Similarity=0.001 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHh-hHHHHHHHHHHHHhhhHHhhHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHH
Q 004356 474 EELRGRLGKLKAMYG-SGIKALDGIAGELDGNSRSTFGDLNSEVSKHSHALEDLFKGIASEADSLLNDLQSSLYKQEEKL 552 (759)
Q Consensus 474 ~~l~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 552 (759)
.+...++...+..+. ..++.+-.+-.-..++-...++.|...+..+..-.+..+..+..++..-+++|...+...+.+.
T Consensus 161 ~Ea~~~l~~~Rk~f~~~~ldyv~~l~~l~~kk~~e~le~l~~~~~a~~~ff~~g~e~~~~~~~p~~~~l~~~l~~~r~~~ 240 (265)
T 2q12_A 161 YEVTEDVYTSRKKQHQTMMHYFCALNTLQYKKKIALLEPLLGYMQAQISFFKMGSENLNEQLEEFLANIGTSVQNVRREM 240 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555443 2344443333322333446777777777777666666666555567777777777776666555
Q ss_pred HHHHH
Q 004356 553 TAYAQ 557 (759)
Q Consensus 553 ~~~~~ 557 (759)
+..++
T Consensus 241 ~~~~~ 245 (265)
T 2q12_A 241 DSDIE 245 (265)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44444
No 96
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=28.40 E-value=5.9e+02 Score=28.55 Aligned_cols=33 Identities=18% Similarity=0.233 Sum_probs=17.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004356 291 DRYLQEEAEKKAMAEKIERMELESESKDKQLME 323 (759)
Q Consensus 291 ~~~~~~e~e~~~~~~~i~~~~~~l~~~~~~l~~ 323 (759)
+.......+.+.+..+++.++.+.....+++..
T Consensus 70 ~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~ 102 (501)
T 1wle_A 70 PGIISTWQELRQLREQIRSLEEEKEAVTEAVRA 102 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555666655555554455444
No 97
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=26.37 E-value=3.9e+02 Score=24.72 Aligned_cols=19 Identities=16% Similarity=0.349 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004356 260 SAMIKDLYSEIDRLKQEVY 278 (759)
Q Consensus 260 ~~li~~l~~Ei~~Lk~el~ 278 (759)
..+|-+|...++.|..++.
T Consensus 10 ~~~ia~L~~D~~s~~~ele 28 (167)
T 4gkw_A 10 EDEVADLKQDTESLQKQLE 28 (167)
T ss_dssp SSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555543
No 98
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=25.91 E-value=7.2e+02 Score=27.64 Aligned_cols=39 Identities=15% Similarity=0.170 Sum_probs=20.4
Q ss_pred hHHHHHhHhhHHHHHHhHHHHHHHHHHhhhhhHHHHHHH
Q 004356 574 SKVTVNFFKTLDMHASNLTKIVEEAQTVNDQKLFEFEKK 612 (759)
Q Consensus 574 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~ 612 (759)
..++.++.+-|.++..-..+++...+..+.+.|..+...
T Consensus 136 ~~~~~~s~~mle~~~~~~~~~~~~~~~~~i~~l~~~~~~ 174 (461)
T 3ghg_B 136 ENVVNEYSSELEKHQLYIDETVNSNIPTNLRVLRSILEN 174 (461)
T ss_dssp HHTTSCHHHHHHHHHTHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHH
Confidence 334445555555555555555655555555555444443
No 99
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=25.51 E-value=7.3e+02 Score=27.59 Aligned_cols=32 Identities=19% Similarity=0.371 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 004356 472 ATEELRGRLGKLKAMYGSGIKALDGIAGELDG 503 (759)
Q Consensus 472 ~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~ 503 (759)
..++|+.++.-++..++..+..|+.|+..|+.
T Consensus 112 ~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~ 143 (491)
T 1m1j_A 112 VSTELRRRIVTLKQRVATQVNRIKALQNSIQE 143 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555554443
No 100
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=25.21 E-value=2.9e+02 Score=22.89 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 004356 306 KIERMELESESKDKQLMELQELY 328 (759)
Q Consensus 306 ~i~~~~~~l~~~~~~l~~l~~~~ 328 (759)
.+..+..++..++.++..|++.+
T Consensus 19 ~l~~Lr~eL~~Ke~eI~~L~e~i 41 (75)
T 3a7o_A 19 TLAILQKELKSKEQEIRRLKEVI 41 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555444
No 101
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=24.52 E-value=73 Score=36.53 Aligned_cols=20 Identities=20% Similarity=0.433 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004356 297 EAEKKAMAEKIERMELESES 316 (759)
Q Consensus 297 e~e~~~~~~~i~~~~~~l~~ 316 (759)
+.++.++..++.+++.+...
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~ 353 (575)
T 2i1j_A 334 EKKQQEYQDRLRQMQEEMER 353 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHH
Confidence 33344444444444444333
No 102
>1tqg_A Chemotaxis protein CHEA; histidine kinase, phosphotransfer, signal transduction, transferase; 0.98A {Thermotoga maritima} SCOP: a.24.10.3
Probab=24.50 E-value=3.3e+02 Score=23.15 Aligned_cols=56 Identities=20% Similarity=0.137 Sum_probs=36.0
Q ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHhhhHHh-hHhhHH
Q 004356 458 MEEDMQSFVSTKAEATEELRGRLGKLKAMY--GSGIKALDGIAGELDGNSRS-TFGDLN 513 (759)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~-~~~~~~ 513 (759)
+.+.+..|+....+.+..+...+..+...- ...+..+.+.+|.+|+.+.. ++..+.
T Consensus 3 ~~~l~~~F~~e~~e~l~~l~~~l~~le~~~~~~~~~~~l~r~~HtLKGsa~~~G~~~l~ 61 (105)
T 1tqg_A 3 HMEYLGVFVDETKEYLQNLNDTLLELEKNPEDMELINEAFRALHTLKGMAGTMGFSSMA 61 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhhhHHHHhcChHHHH
Confidence 345566677776667777777666655432 23567788999999988754 344443
No 103
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=23.77 E-value=7.8e+02 Score=27.34 Aligned_cols=21 Identities=19% Similarity=0.317 Sum_probs=9.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHH
Q 004356 417 KIEEGNRILIQMFQSQLTQQL 437 (759)
Q Consensus 417 ~~~~~n~~~~~~~~~~~~~~~ 437 (759)
.....|..++.++.+.|++..
T Consensus 130 ~~~~~n~~~~~~s~~mle~~~ 150 (461)
T 3ghg_B 130 KQVKDNENVVNEYSSELEKHQ 150 (461)
T ss_dssp HHHHHHHHTTSCHHHHHHHHH
T ss_pred CCCCcchhHHHHHHHHHHHHH
Confidence 333344444555444444433
No 104
>3kyj_A CHEA3, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_A
Probab=22.19 E-value=4.6e+02 Score=24.10 Aligned_cols=57 Identities=21% Similarity=0.246 Sum_probs=37.4
Q ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHhhhHHh-hHhhHH
Q 004356 457 DMEEDMQSFVSTKAEATEELRGRLGKLKAMY--GSGIKALDGIAGELDGNSRS-TFGDLN 513 (759)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~-~~~~~~ 513 (759)
.+.+.+..|+....+.+..+...+..+...- .+.+..|-+.++++|+.+.- ++..|.
T Consensus 8 ~~~ell~~FleEa~E~L~~le~~Ll~le~~~~d~e~l~~lfR~~HTLKGsA~~~G~~~i~ 67 (144)
T 3kyj_A 8 EMDEIWALYADDGAQALDAMEASLLALQAGEDAAAHVGPLFRAVHTFKGNSRVLGLSVVE 67 (144)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhHhhHHHhcCchHHH
Confidence 3455566677777777777777776666542 24567788888999988754 354444
No 105
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=22.11 E-value=6.2e+02 Score=27.64 Aligned_cols=14 Identities=14% Similarity=0.204 Sum_probs=5.5
Q ss_pred HHHHHhHHHHHHHH
Q 004356 539 NDLQSSLYKQEEKL 552 (759)
Q Consensus 539 ~~~~~~~~~~~~e~ 552 (759)
..|+..+..++..+
T Consensus 108 ~~l~~~~~~~~~~i 121 (409)
T 1m1j_C 108 QQLTDMHIMNSNKI 121 (409)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHH
Confidence 34444443333333
No 106
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=21.11 E-value=4.6e+02 Score=23.63 Aligned_cols=55 Identities=13% Similarity=0.120 Sum_probs=35.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 004356 509 FGDLNSEVSKHSHALEDLFKGIASEADSLLNDLQSSLYKQEEKLTAYAQQQREAH 563 (759)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 563 (759)
+.+....+.......+.-|..-..++...+..+...|...+.+|+.-.++..+.+
T Consensus 55 l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~Ll 109 (129)
T 3tnu_B 55 VKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARLLREYQELM 109 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3444455556666666666666667777777777777777777766555554433
No 107
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=20.61 E-value=5.5e+02 Score=24.34 Aligned_cols=41 Identities=20% Similarity=0.271 Sum_probs=22.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHhhhHhHHHHh
Q 004356 625 LEKVAELLASSNARKKQLVQMAVQDLRESASSRTSQLQKEM 665 (759)
Q Consensus 625 ~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (759)
++.+...+..+.+.=...|.-++..+++.+......|+..+
T Consensus 119 ~~el~~~l~~~~EelR~kl~P~~eeL~~~~~~~~eeLr~kL 159 (165)
T 1gs9_A 119 RGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKRL 159 (165)
T ss_dssp HHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 44444555555555555666666666655555555554433
No 108
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=20.40 E-value=7.6e+02 Score=25.90 Aligned_cols=27 Identities=19% Similarity=0.166 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 004356 472 ATEELRGRLGKLKAMYGSGIKALDGIA 498 (759)
Q Consensus 472 ~~~~l~~~~~~~~~~~~~~~~~i~~~~ 498 (759)
.+..++.++..++..+....+.+..+.
T Consensus 222 ~l~~lrr~l~~lrr~l~p~~~vl~~L~ 248 (363)
T 2iub_A 222 RTHQLKRNLVELRKTIWPLREVLSSLY 248 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666555555554444
Done!