Query 004358
Match_columns 759
No_of_seqs 226 out of 2020
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 22:41:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004358.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004358hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a15_A XPD helicase, ATP-depen 100.0 9.9E-90 3.4E-94 796.8 45.6 596 14-726 2-614 (620)
2 3crv_A XPD/RAD3 related DNA he 100.0 3.6E-78 1.2E-82 695.5 43.2 528 14-703 2-543 (551)
3 2vl7_A XPD; helicase, unknown 100.0 3.4E-71 1.2E-75 635.0 41.8 517 12-693 4-531 (540)
4 1xti_A Probable ATP-dependent 99.8 1.4E-17 4.8E-22 182.8 29.4 76 12-92 26-101 (391)
5 3pey_A ATP-dependent RNA helic 99.8 3.5E-17 1.2E-21 179.6 27.9 76 12-90 23-98 (395)
6 1s2m_A Putative ATP-dependent 99.8 4.4E-17 1.5E-21 179.6 26.5 75 12-91 39-113 (400)
7 3sqw_A ATP-dependent RNA helic 99.8 1.4E-16 4.7E-21 184.4 29.7 78 11-91 38-119 (579)
8 2db3_A ATP-dependent RNA helic 99.8 1.1E-16 3.8E-21 178.5 27.8 75 12-91 74-153 (434)
9 1hv8_A Putative ATP-dependent 99.8 1.1E-16 3.6E-21 173.9 26.6 114 524-682 230-344 (367)
10 2i4i_A ATP-dependent RNA helic 99.7 2.2E-16 7.7E-21 174.8 27.1 106 532-682 276-382 (417)
11 3i5x_A ATP-dependent RNA helic 99.7 5.5E-16 1.9E-20 178.9 29.8 79 11-92 89-171 (563)
12 2j0s_A ATP-dependent RNA helic 99.7 4.5E-16 1.5E-20 172.1 27.0 75 12-91 55-129 (410)
13 3fht_A ATP-dependent RNA helic 99.7 6.1E-16 2.1E-20 170.9 24.8 78 11-91 42-119 (412)
14 2z0m_A 337AA long hypothetical 99.7 1.7E-15 5.7E-20 162.5 24.4 70 11-91 11-80 (337)
15 2v1x_A ATP-dependent DNA helic 99.7 4.6E-15 1.6E-19 170.9 29.2 69 11-90 39-107 (591)
16 3eiq_A Eukaryotic initiation f 99.7 1.7E-15 5.8E-20 167.5 24.4 76 11-91 57-132 (414)
17 1fuu_A Yeast initiation factor 99.7 1E-16 3.5E-21 176.1 12.5 75 12-91 39-113 (394)
18 1oyw_A RECQ helicase, ATP-depe 99.7 5.8E-15 2E-19 168.1 26.5 70 10-90 19-88 (523)
19 3oiy_A Reverse gyrase helicase 99.7 5.3E-15 1.8E-19 163.8 25.4 71 11-90 17-87 (414)
20 3fho_A ATP-dependent RNA helic 99.6 4.3E-16 1.5E-20 177.2 12.1 76 12-90 137-212 (508)
21 1wp9_A ATP-dependent RNA helic 99.6 9.1E-14 3.1E-18 156.2 28.4 68 14-90 8-75 (494)
22 2va8_A SSO2462, SKI2-type heli 99.6 1.7E-13 5.7E-18 162.6 28.6 73 12-90 26-98 (715)
23 2eyq_A TRCF, transcription-rep 99.5 6.4E-13 2.2E-17 163.8 28.8 76 10-90 598-675 (1151)
24 2p6r_A Afuhel308 helicase; pro 99.5 1.3E-13 4.4E-18 163.1 20.3 72 11-90 20-91 (702)
25 4a4z_A Antiviral helicase SKI2 99.5 1.8E-13 6.3E-18 166.1 21.4 74 8-90 32-105 (997)
26 3l9o_A ATP-dependent RNA helic 99.5 6.5E-13 2.2E-17 162.8 26.3 74 8-90 177-250 (1108)
27 2xgj_A ATP-dependent RNA helic 99.5 9E-13 3.1E-17 160.1 26.9 73 9-90 80-152 (1010)
28 2oca_A DAR protein, ATP-depend 99.5 6.3E-13 2.2E-17 151.3 21.6 70 13-90 111-180 (510)
29 2zj8_A DNA helicase, putative 99.5 1.2E-12 4.1E-17 155.3 23.1 73 12-90 19-91 (720)
30 3h1t_A Type I site-specific re 99.5 6E-12 2.1E-16 145.8 27.9 71 17-88 179-257 (590)
31 1qde_A EIF4A, translation init 99.5 1.1E-13 3.6E-18 139.7 11.0 76 11-91 31-106 (224)
32 3iuy_A Probable ATP-dependent 99.5 1.2E-13 4.2E-18 139.7 11.5 74 12-90 38-117 (228)
33 1vec_A ATP-dependent RNA helic 99.5 1.2E-13 4.2E-18 137.3 10.9 76 11-91 20-95 (206)
34 3fe2_A Probable ATP-dependent 99.5 1.8E-13 6.2E-18 139.9 11.7 77 11-92 46-127 (242)
35 3dkp_A Probable ATP-dependent 99.4 1.3E-13 4.5E-18 141.2 9.0 75 12-91 47-122 (245)
36 3ber_A Probable ATP-dependent 99.4 3.5E-13 1.2E-17 138.5 12.2 76 11-91 60-135 (249)
37 2oxc_A Probable ATP-dependent 99.4 3.8E-13 1.3E-17 136.4 11.9 76 11-91 41-116 (230)
38 1t6n_A Probable ATP-dependent 99.4 3.5E-13 1.2E-17 135.5 11.4 75 12-91 32-106 (220)
39 1q0u_A Bstdead; DEAD protein, 99.4 2E-13 6.9E-18 137.3 9.5 76 11-91 21-96 (219)
40 1wrb_A DJVLGB; RNA helicase, D 99.4 5.2E-13 1.8E-17 137.4 12.5 75 12-91 41-124 (253)
41 1gku_B Reverse gyrase, TOP-RG; 99.4 1.3E-12 4.6E-17 159.9 17.3 71 11-91 53-123 (1054)
42 2pl3_A Probable ATP-dependent 99.4 6.5E-13 2.2E-17 135.2 12.1 74 12-90 43-120 (236)
43 4f92_B U5 small nuclear ribonu 99.4 1.2E-11 4E-16 157.2 25.8 72 14-90 924-995 (1724)
44 2gxq_A Heat resistant RNA depe 99.4 6.7E-13 2.3E-17 132.0 11.5 74 12-90 19-95 (207)
45 4ddu_A Reverse gyrase; topoiso 99.4 1.1E-11 3.8E-16 151.9 23.2 71 11-90 74-144 (1104)
46 4f92_B U5 small nuclear ribonu 99.4 1.8E-11 6.1E-16 155.5 25.4 76 11-90 73-157 (1724)
47 3bor_A Human initiation factor 99.4 8.1E-13 2.8E-17 134.6 10.0 75 12-91 48-122 (237)
48 3ly5_A ATP-dependent RNA helic 99.3 2E-12 7E-17 133.7 10.6 75 12-91 72-150 (262)
49 3fmo_B ATP-dependent RNA helic 99.3 7.5E-12 2.6E-16 132.1 9.6 75 12-91 110-186 (300)
50 3b6e_A Interferon-induced heli 99.2 1.6E-11 5.6E-16 122.5 10.6 73 12-90 30-106 (216)
51 2jlq_A Serine protease subunit 99.2 6.9E-11 2.4E-15 132.1 16.0 118 531-681 187-308 (451)
52 3tbk_A RIG-I helicase domain; 99.2 3.4E-11 1.2E-15 138.0 12.9 73 13-91 2-76 (555)
53 4a2p_A RIG-I, retinoic acid in 99.2 4.5E-11 1.6E-15 137.2 12.3 74 12-91 4-79 (556)
54 2v6i_A RNA helicase; membrane, 99.2 9.4E-10 3.2E-14 122.1 20.5 119 531-681 170-288 (431)
55 2ykg_A Probable ATP-dependent 99.2 1.1E-10 3.7E-15 138.1 13.5 77 10-91 7-85 (696)
56 2whx_A Serine protease/ntpase/ 99.1 9.8E-10 3.3E-14 126.9 19.6 121 531-681 354-475 (618)
57 4a2q_A RIG-I, retinoic acid in 99.1 1.3E-10 4.3E-15 139.4 12.4 74 13-91 245-320 (797)
58 1gm5_A RECG; helicase, replica 99.1 2.3E-10 7.8E-15 134.9 13.7 76 11-91 364-441 (780)
59 3fmp_B ATP-dependent RNA helic 99.1 5.9E-11 2E-15 133.9 6.9 77 12-91 110-186 (479)
60 4a2w_A RIG-I, retinoic acid in 99.1 2.4E-10 8.1E-15 138.8 10.1 73 14-91 246-320 (936)
61 4gl2_A Interferon-induced heli 99.0 1.3E-10 4.3E-15 137.6 6.0 73 13-91 5-81 (699)
62 2xau_A PRE-mRNA-splicing facto 99.0 8.3E-09 2.8E-13 122.2 21.0 143 515-679 285-438 (773)
63 1rif_A DAR protein, DNA helica 99.0 1E-09 3.6E-14 114.6 11.5 69 14-90 112-180 (282)
64 2fz4_A DNA repair protein RAD2 99.0 1.9E-09 6.4E-14 109.6 10.7 67 11-89 89-155 (237)
65 2fwr_A DNA repair protein RAD2 98.9 2.1E-09 7.1E-14 120.9 10.8 68 10-89 88-155 (472)
66 1nkt_A Preprotein translocase 98.9 1.9E-07 6.5E-12 108.5 26.6 70 12-92 108-177 (922)
67 3jux_A Protein translocase sub 98.7 1E-06 3.4E-11 100.4 23.8 152 441-624 399-558 (822)
68 1z63_A Helicase of the SNF2/RA 98.7 3.9E-08 1.3E-12 111.3 12.5 71 17-90 38-108 (500)
69 2w00_A HSDR, R.ECOR124I; ATP-b 98.7 3.6E-08 1.2E-12 119.4 11.2 72 17-90 272-353 (1038)
70 2fsf_A Preprotein translocase 98.5 1.3E-07 4.4E-12 109.7 8.2 66 17-92 75-140 (853)
71 3llm_A ATP-dependent RNA helic 98.5 2.3E-07 8E-12 93.9 9.3 69 17-89 62-131 (235)
72 1tf5_A Preprotein translocase 98.5 2E-07 6.9E-12 108.3 9.7 70 12-92 80-149 (844)
73 3mwy_W Chromo domain-containin 98.5 3.1E-07 1E-11 109.9 11.3 73 16-90 236-308 (800)
74 3dmq_A RNA polymerase-associat 98.5 3.1E-07 1.1E-11 111.7 11.2 100 530-674 501-604 (968)
75 2ipc_A Preprotein translocase 98.4 5.9E-07 2E-11 104.1 10.5 70 12-92 76-145 (997)
76 1z3i_X Similar to RAD54-like; 98.4 7.7E-07 2.7E-11 103.7 10.3 74 16-91 55-137 (644)
77 4b3f_X DNA-binding protein smu 98.1 1.1E-05 3.8E-10 94.0 13.1 67 16-89 189-255 (646)
78 3o8b_A HCV NS3 protease/helica 97.9 4.6E-06 1.6E-10 95.9 3.7 54 29-89 226-279 (666)
79 2gk6_A Regulator of nonsense t 97.9 6.9E-05 2.4E-09 86.8 13.4 67 16-89 180-246 (624)
80 2hjv_A ATP-dependent RNA helic 97.8 0.0002 6.8E-09 67.6 13.3 106 531-681 34-140 (163)
81 2z83_A Helicase/nucleoside tri 97.8 5.4E-06 1.8E-10 92.5 2.7 57 29-88 15-71 (459)
82 2p6n_A ATP-dependent RNA helic 97.8 0.00014 4.9E-09 70.6 11.7 115 523-682 45-160 (191)
83 2rb4_A ATP-dependent RNA helic 97.7 0.00026 8.9E-09 67.6 12.9 115 524-678 25-141 (175)
84 1yks_A Genome polyprotein [con 97.7 9.3E-06 3.2E-10 90.0 2.7 56 31-89 4-59 (440)
85 2wv9_A Flavivirin protease NS2 97.7 2.8E-06 9.7E-11 98.8 -2.2 119 531-680 409-529 (673)
86 1fuk_A Eukaryotic initiation f 97.7 0.00042 1.4E-08 65.5 12.9 80 531-625 29-109 (165)
87 3eaq_A Heat resistant RNA depe 97.6 0.00042 1.4E-08 68.5 13.1 107 531-682 30-137 (212)
88 2jgn_A DBX, DDX3, ATP-dependen 97.6 0.00047 1.6E-08 66.6 12.1 106 531-681 45-151 (185)
89 2wjy_A Regulator of nonsense t 97.6 0.00035 1.2E-08 82.7 13.3 67 16-89 356-422 (800)
90 1t5i_A C_terminal domain of A 97.5 0.00053 1.8E-08 65.3 11.1 106 531-681 30-136 (172)
91 2xzl_A ATP-dependent helicase 97.5 0.0003 1E-08 83.4 11.0 67 16-89 360-426 (802)
92 3i32_A Heat resistant RNA depe 97.1 0.0033 1.1E-07 65.5 12.8 107 531-682 27-134 (300)
93 2yjt_D ATP-dependent RNA helic 96.1 9.5E-05 3.3E-09 70.4 0.0 80 531-625 29-109 (170)
94 3fmp_B ATP-dependent RNA helic 96.9 0.00021 7.3E-09 79.9 1.5 114 531-683 332-446 (479)
95 3rc3_A ATP-dependent RNA helic 96.9 0.00066 2.2E-08 78.7 5.5 122 532-683 320-444 (677)
96 3upu_A ATP-dependent DNA helic 96.8 0.0033 1.1E-07 69.8 10.4 68 12-82 21-89 (459)
97 1yks_A Genome polyprotein [con 96.8 0.0052 1.8E-07 67.8 11.2 76 531-625 176-251 (440)
98 4gl2_A Interferon-induced heli 96.3 0.007 2.4E-07 70.9 9.3 85 532-625 400-493 (699)
99 2fwr_A DNA repair protein RAD2 96.2 0.0058 2E-07 68.0 7.2 94 531-673 348-441 (472)
100 2d7d_A Uvrabc system protein B 96.1 0.037 1.3E-06 64.1 13.7 76 8-91 5-81 (661)
101 1z3i_X Similar to RAD54-like; 96.1 0.14 4.7E-06 59.2 18.6 150 531-749 415-568 (644)
102 1w36_D RECD, exodeoxyribonucle 96.1 0.01 3.6E-07 68.1 8.8 67 18-90 151-219 (608)
103 2z83_A Helicase/nucleoside tri 96.0 0.007 2.4E-07 67.2 6.3 122 531-682 189-312 (459)
104 1z5z_A Helicase of the SNF2/RA 95.9 0.094 3.2E-06 53.5 14.2 94 518-626 99-195 (271)
105 3tbk_A RIG-I helicase domain; 95.8 0.02 6.8E-07 64.7 9.6 99 518-626 374-482 (555)
106 1c4o_A DNA nucleotide excision 95.8 0.047 1.6E-06 63.3 12.5 70 13-90 6-76 (664)
107 4a2p_A RIG-I, retinoic acid in 95.8 0.019 6.5E-07 64.9 9.1 98 518-625 375-482 (556)
108 3rc3_A ATP-dependent RNA helic 95.5 0.044 1.5E-06 63.5 10.5 69 11-89 124-201 (677)
109 1c4o_A DNA nucleotide excision 95.2 0.043 1.5E-06 63.7 9.5 110 531-682 438-549 (664)
110 2ykg_A Probable ATP-dependent 95.2 0.041 1.4E-06 64.3 9.5 98 518-625 383-490 (696)
111 4a2w_A RIG-I, retinoic acid in 95.1 0.06 2.1E-06 65.1 10.6 98 518-625 616-723 (936)
112 1z63_A Helicase of the SNF2/RA 95.1 0.12 4.1E-06 57.6 12.4 116 518-677 328-445 (500)
113 2wv9_A Flavivirin protease NS2 95.0 0.079 2.7E-06 61.4 10.7 71 16-89 215-292 (673)
114 3lfu_A DNA helicase II; SF1 he 94.8 0.046 1.6E-06 63.2 8.3 68 16-91 9-78 (647)
115 4a2q_A RIG-I, retinoic acid in 94.7 0.075 2.6E-06 63.2 9.7 98 518-625 616-723 (797)
116 3mwy_W Chromo domain-containin 94.6 0.12 4E-06 61.5 11.3 114 520-678 561-677 (800)
117 1gm5_A RECG; helicase, replica 94.6 0.03 1E-06 66.0 5.8 117 520-679 567-692 (780)
118 3dmq_A RNA polymerase-associat 94.2 0.15 5.2E-06 61.8 11.0 72 13-90 151-222 (968)
119 3e1s_A Exodeoxyribonuclease V, 93.8 0.13 4.5E-06 58.4 9.0 63 13-84 187-249 (574)
120 2d7d_A Uvrabc system protein B 93.7 0.16 5.3E-06 58.9 9.6 109 531-682 444-555 (661)
121 1uaa_A REP helicase, protein ( 92.7 0.14 4.9E-06 59.5 7.3 67 17-90 3-70 (673)
122 1pjr_A PCRA; DNA repair, DNA r 92.0 0.26 8.8E-06 57.8 8.3 67 16-90 11-79 (724)
123 2w58_A DNAI, primosome compone 92.0 0.33 1.1E-05 46.7 7.6 33 19-51 32-70 (202)
124 2o0j_A Terminase, DNA packagin 92.0 0.54 1.8E-05 50.3 9.9 73 12-91 160-232 (385)
125 3cpe_A Terminase, DNA packagin 91.7 0.53 1.8E-05 53.7 10.2 73 12-91 160-232 (592)
126 3co5_A Putative two-component 91.5 0.13 4.4E-06 46.8 3.8 28 24-51 16-43 (143)
127 3ec2_A DNA replication protein 91.4 0.34 1.2E-05 45.6 7.0 35 18-52 16-55 (180)
128 3n70_A Transport activator; si 91.3 0.16 5.5E-06 46.2 4.3 29 23-51 12-40 (145)
129 2r44_A Uncharacterized protein 91.0 0.11 3.9E-06 54.4 3.4 34 18-51 29-62 (331)
130 3nbx_X ATPase RAVA; AAA+ ATPas 90.9 0.13 4.4E-06 57.3 3.8 34 18-51 24-57 (500)
131 3o8b_A HCV NS3 protease/helica 90.7 1.4 4.9E-05 50.4 12.3 72 531-624 395-466 (666)
132 2fsf_A Preprotein translocase 90.4 3.6 0.00012 48.0 15.3 139 442-612 367-507 (853)
133 2w00_A HSDR, R.ECOR124I; ATP-b 90.1 1.4 4.9E-05 53.3 12.2 61 579-678 640-703 (1038)
134 3u4q_A ATP-dependent helicase/ 88.6 0.53 1.8E-05 58.6 7.2 65 17-89 11-79 (1232)
135 2qgz_A Helicase loader, putati 88.6 1.1 3.6E-05 46.5 8.5 34 19-52 131-169 (308)
136 1tf5_A Preprotein translocase 88.6 8.7 0.0003 44.9 16.7 151 442-624 358-516 (844)
137 1a5t_A Delta prime, HOLB; zinc 88.5 0.44 1.5E-05 50.1 5.6 37 17-53 3-42 (334)
138 1ofh_A ATP-dependent HSL prote 87.5 0.34 1.2E-05 49.9 3.9 34 19-52 18-67 (310)
139 3hws_A ATP-dependent CLP prote 87.4 0.33 1.1E-05 51.6 3.8 32 20-51 19-67 (363)
140 1jbk_A CLPB protein; beta barr 87.0 0.45 1.5E-05 44.6 4.1 34 19-52 25-60 (195)
141 1njg_A DNA polymerase III subu 86.8 0.41 1.4E-05 46.8 3.8 32 20-51 27-61 (250)
142 2chg_A Replication factor C sm 86.6 0.44 1.5E-05 45.9 3.9 32 20-51 21-54 (226)
143 3te6_A Regulatory protein SIR3 86.5 0.55 1.9E-05 48.9 4.7 36 18-53 25-63 (318)
144 2p65_A Hypothetical protein PF 86.0 0.51 1.7E-05 44.1 3.9 34 19-52 25-60 (187)
145 2bjv_A PSP operon transcriptio 85.8 0.56 1.9E-05 47.3 4.3 32 20-51 14-45 (265)
146 4fcw_A Chaperone protein CLPB; 85.8 0.34 1.2E-05 50.0 2.7 34 19-52 20-64 (311)
147 1iqp_A RFCS; clamp loader, ext 85.4 0.6 2.1E-05 48.3 4.5 35 19-53 28-64 (327)
148 2b8t_A Thymidine kinase; deoxy 85.4 0.72 2.5E-05 45.4 4.7 41 33-77 10-50 (223)
149 3bos_A Putative DNA replicatio 84.4 2.2 7.4E-05 41.6 7.8 33 20-52 35-69 (242)
150 1l8q_A Chromosomal replication 83.5 3.1 0.00011 43.1 8.9 64 9-76 5-74 (324)
151 1sxj_C Activator 1 40 kDa subu 83.2 0.89 3E-05 47.7 4.6 35 20-54 29-65 (340)
152 3pfi_A Holliday junction ATP-d 83.2 0.61 2.1E-05 48.8 3.3 34 19-52 32-72 (338)
153 3uk6_A RUVB-like 2; hexameric 82.9 1.6 5.3E-05 46.2 6.4 36 18-53 49-88 (368)
154 3syl_A Protein CBBX; photosynt 82.7 1.8 6E-05 44.5 6.6 18 36-53 68-85 (309)
155 1sxj_D Activator 1 41 kDa subu 82.5 0.44 1.5E-05 50.1 1.9 35 19-53 40-76 (353)
156 2qby_B CDC6 homolog 3, cell di 82.1 2.8 9.7E-05 44.3 8.2 17 36-52 46-62 (384)
157 1ojl_A Transcriptional regulat 81.5 0.96 3.3E-05 46.7 4.0 29 23-51 13-41 (304)
158 3b9p_A CG5977-PA, isoform A; A 81.3 0.78 2.7E-05 47.0 3.2 18 35-52 54-71 (297)
159 1g8p_A Magnesium-chelatase 38 80.7 0.58 2E-05 49.1 2.0 39 12-51 21-61 (350)
160 3h4m_A Proteasome-activating n 79.7 1.3 4.4E-05 44.9 4.2 17 35-51 51-67 (285)
161 1jr3_A DNA polymerase III subu 78.4 1.6 5.5E-05 46.1 4.6 34 19-52 19-55 (373)
162 1lv7_A FTSH; alpha/beta domain 78.1 1.8 6.3E-05 43.1 4.7 34 18-51 17-61 (257)
163 2qz4_A Paraplegin; AAA+, SPG7, 78.0 2.2 7.6E-05 42.4 5.3 34 18-51 11-55 (262)
164 2chq_A Replication factor C sm 77.8 1 3.5E-05 46.4 2.7 34 20-53 21-56 (319)
165 3pvs_A Replication-associated 77.6 1.2 3.9E-05 48.9 3.2 35 18-52 28-67 (447)
166 2zts_A Putative uncharacterize 77.6 2 6.7E-05 42.3 4.7 51 33-87 28-78 (251)
167 1hqc_A RUVB; extended AAA-ATPa 77.5 1.1 3.8E-05 46.3 2.9 33 20-52 16-55 (324)
168 3pxg_A Negative regulator of g 77.5 1.1 3.7E-05 49.4 3.0 35 19-53 183-219 (468)
169 2c9o_A RUVB-like 1; hexameric 77.1 2.7 9.1E-05 46.1 6.0 33 21-53 45-81 (456)
170 3cf0_A Transitional endoplasmi 77.0 1.5 5.1E-05 45.1 3.8 17 35-51 49-65 (301)
171 1um8_A ATP-dependent CLP prote 76.7 1.8 6.3E-05 45.9 4.5 18 35-52 72-89 (376)
172 1p9r_A General secretion pathw 76.7 2.6 8.9E-05 45.6 5.6 50 18-73 152-201 (418)
173 3k1j_A LON protease, ATP-depen 76.3 1.9 6.3E-05 49.3 4.6 35 19-53 44-78 (604)
174 2gno_A DNA polymerase III, gam 74.9 2.2 7.6E-05 44.0 4.3 35 20-54 1-37 (305)
175 3d8b_A Fidgetin-like protein 1 74.9 1.9 6.5E-05 45.6 3.9 18 35-52 117-134 (357)
176 3pxi_A Negative regulator of g 74.8 1.7 5.8E-05 51.1 3.9 33 20-52 495-538 (758)
177 1xx6_A Thymidine kinase; NESG, 74.5 2.9 9.8E-05 39.9 4.7 39 35-77 8-46 (191)
178 2dr3_A UPF0273 protein PH0284; 74.5 3 0.0001 40.9 5.1 40 32-75 20-59 (247)
179 1in4_A RUVB, holliday junction 74.2 2.1 7.1E-05 44.8 4.0 33 20-52 29-68 (334)
180 3vfd_A Spastin; ATPase, microt 73.0 1.9 6.4E-05 46.2 3.3 34 19-52 118-165 (389)
181 3eie_A Vacuolar protein sortin 73.0 1.9 6.7E-05 44.7 3.4 35 18-52 20-68 (322)
182 2z4s_A Chromosomal replication 72.9 7.2 0.00025 42.4 8.1 39 36-76 131-169 (440)
183 1sxj_B Activator 1 37 kDa subu 72.8 2.4 8.1E-05 43.6 4.0 34 20-53 25-60 (323)
184 2orw_A Thymidine kinase; TMTK, 72.6 4.2 0.00014 38.4 5.4 39 35-77 3-41 (184)
185 1fnn_A CDC6P, cell division co 72.4 1.8 6.1E-05 45.9 3.0 34 19-52 20-61 (389)
186 1r6b_X CLPA protein; AAA+, N-t 72.1 1.5 5.1E-05 51.5 2.5 33 20-52 462-505 (758)
187 2gza_A Type IV secretion syste 72.0 4 0.00014 43.2 5.5 26 25-50 165-190 (361)
188 1sxj_A Activator 1 95 kDa subu 72.0 2.7 9.3E-05 46.9 4.5 34 20-53 43-95 (516)
189 1tue_A Replication protein E1; 71.8 3.9 0.00013 39.5 4.8 19 36-54 59-77 (212)
190 2r62_A Cell division protease 71.7 1.6 5.3E-05 43.9 2.2 17 36-52 45-61 (268)
191 2v1u_A Cell division control p 71.5 1.4 4.6E-05 46.7 1.8 34 19-52 22-61 (387)
192 1g41_A Heat shock protein HSLU 71.4 2.6 9E-05 45.8 4.0 32 20-51 19-66 (444)
193 3bh0_A DNAB-like replicative h 71.1 3 0.0001 43.2 4.2 51 30-85 63-113 (315)
194 3pxi_A Negative regulator of g 70.7 1.9 6.6E-05 50.6 3.0 36 18-53 182-219 (758)
195 2qby_A CDC6 homolog 1, cell di 70.3 4.6 0.00016 42.4 5.7 35 19-53 23-63 (386)
196 3bgw_A DNAB-like replicative h 70.3 3 0.0001 45.5 4.2 42 31-76 193-234 (444)
197 3f9v_A Minichromosome maintena 70.0 1.3 4.3E-05 50.6 1.1 31 20-50 299-342 (595)
198 1d2n_A N-ethylmaleimide-sensit 70.0 4.1 0.00014 40.9 4.9 17 36-52 65-81 (272)
199 4b4t_L 26S protease subunit RP 69.6 4.3 0.00015 44.0 5.2 22 36-59 216-237 (437)
200 3u61_B DNA polymerase accessor 69.6 3.1 0.0001 43.0 4.0 52 19-77 29-83 (324)
201 4a1f_A DNAB helicase, replicat 69.6 3.4 0.00012 43.3 4.2 54 27-85 38-91 (338)
202 1xwi_A SKD1 protein; VPS4B, AA 69.1 3.1 0.00011 43.2 3.9 16 36-51 46-61 (322)
203 4b4t_K 26S protease regulatory 69.1 4.4 0.00015 43.9 5.1 22 36-59 207-228 (428)
204 3t15_A Ribulose bisphosphate c 68.9 4.4 0.00015 41.4 4.9 22 36-59 37-58 (293)
205 1qvr_A CLPB protein; coiled co 68.8 1.9 6.5E-05 51.5 2.4 33 20-52 562-605 (854)
206 2r6a_A DNAB helicase, replicat 68.7 3.3 0.00011 45.3 4.1 55 27-85 195-249 (454)
207 2qp9_X Vacuolar protein sortin 68.7 2.4 8.2E-05 44.8 2.9 17 36-52 85-101 (355)
208 2q6t_A DNAB replication FORK h 68.6 3.2 0.00011 45.3 3.9 56 26-85 191-246 (444)
209 2qen_A Walker-type ATPase; unk 68.1 3 0.0001 43.2 3.6 28 24-51 20-47 (350)
210 2ius_A DNA translocase FTSK; n 67.8 5.7 0.0002 44.0 5.8 44 34-77 166-209 (512)
211 3vkw_A Replicase large subunit 67.4 4.2 0.00014 44.1 4.5 44 36-88 162-205 (446)
212 2oap_1 GSPE-2, type II secreti 66.9 4.3 0.00015 45.1 4.6 29 23-51 248-276 (511)
213 3hu3_A Transitional endoplasmi 66.8 2.5 8.6E-05 46.7 2.7 17 36-52 239-255 (489)
214 1e9r_A Conjugal transfer prote 66.2 5.2 0.00018 43.4 5.1 39 35-79 53-93 (437)
215 1cr0_A DNA primase/helicase; R 66.1 4 0.00014 41.6 4.0 48 25-75 25-72 (296)
216 2zpa_A Uncharacterized protein 64.9 3.4 0.00012 47.2 3.3 58 17-83 176-233 (671)
217 2zan_A Vacuolar protein sortin 64.7 4.1 0.00014 44.5 3.8 33 20-52 138-184 (444)
218 4akg_A Glutathione S-transfera 63.9 5.7 0.00019 52.9 5.5 34 18-51 1250-1283(2695)
219 1u0j_A DNA replication protein 63.9 7 0.00024 39.3 5.1 17 37-53 106-122 (267)
220 1w5s_A Origin recognition comp 63.8 3.2 0.00011 44.3 2.8 35 18-52 27-69 (412)
221 2pt7_A CAG-ALFA; ATPase, prote 63.5 4.9 0.00017 41.9 4.1 27 24-50 160-186 (330)
222 1ixz_A ATP-dependent metallopr 62.9 7.5 0.00026 38.4 5.2 34 18-51 21-65 (254)
223 2kjq_A DNAA-related protein; s 62.8 6.3 0.00022 35.7 4.2 18 34-51 35-52 (149)
224 1q57_A DNA primase/helicase; d 62.6 3.4 0.00012 45.8 2.8 51 31-85 238-288 (503)
225 1g5t_A COB(I)alamin adenosyltr 62.5 8.5 0.00029 36.7 5.1 42 28-73 21-62 (196)
226 2w0m_A SSO2452; RECA, SSPF, un 62.1 8.4 0.00029 37.1 5.3 41 31-75 19-59 (235)
227 2j9r_A Thymidine kinase; TK1, 61.0 8.6 0.00029 37.2 4.9 39 35-77 28-66 (214)
228 2cvh_A DNA repair and recombin 60.6 4.2 0.00014 39.0 2.7 24 31-54 16-39 (220)
229 4b4t_M 26S protease regulatory 60.5 4.5 0.00016 43.8 3.2 22 36-59 216-237 (434)
230 1sxj_E Activator 1 40 kDa subu 59.9 3.3 0.00011 43.3 2.0 34 20-53 18-54 (354)
231 4b4t_J 26S protease regulatory 59.9 4.9 0.00017 43.0 3.3 22 36-59 183-204 (405)
232 2r2a_A Uncharacterized protein 59.7 5.9 0.0002 38.0 3.5 18 37-54 7-24 (199)
233 2ce7_A Cell division protein F 59.2 8.3 0.00028 42.4 5.0 34 19-52 22-66 (476)
234 1n0w_A DNA repair protein RAD5 59.2 6.6 0.00022 38.3 3.9 25 32-56 21-45 (243)
235 4akg_A Glutathione S-transfera 59.0 17 0.00057 48.6 8.5 37 18-54 906-942 (2695)
236 1iy2_A ATP-dependent metallopr 58.6 9.9 0.00034 38.2 5.2 34 18-51 45-89 (278)
237 3vkg_A Dynein heavy chain, cyt 58.2 7.6 0.00026 52.3 5.2 33 18-50 1287-1319(3245)
238 2bwj_A Adenylate kinase 5; pho 58.1 4.4 0.00015 38.2 2.3 23 29-51 6-28 (199)
239 2r8r_A Sensor protein; KDPD, P 57.7 11 0.00037 36.9 5.0 37 37-77 8-45 (228)
240 2iut_A DNA translocase FTSK; n 57.0 12 0.0004 41.9 5.8 43 35-77 214-256 (574)
241 3b85_A Phosphate starvation-in 56.9 12 0.00041 36.0 5.2 35 14-52 5-39 (208)
242 1kgd_A CASK, peripheral plasma 56.6 4.4 0.00015 37.8 2.0 18 34-51 4-21 (180)
243 2px0_A Flagellar biosynthesis 55.9 11 0.00039 38.4 5.1 37 35-74 105-141 (296)
244 3tau_A Guanylate kinase, GMP k 55.1 4.8 0.00016 38.7 2.0 18 34-51 7-24 (208)
245 1r6b_X CLPA protein; AAA+, N-t 54.9 6.3 0.00022 46.1 3.4 34 19-52 189-224 (758)
246 4b4t_I 26S protease regulatory 54.8 6.3 0.00022 42.5 3.1 40 18-59 187-238 (437)
247 2fna_A Conserved hypothetical 54.5 3 0.0001 43.3 0.5 30 18-52 18-47 (357)
248 1nlf_A Regulatory protein REPA 54.2 19 0.00065 36.1 6.5 26 32-57 27-52 (279)
249 3ney_A 55 kDa erythrocyte memb 53.4 5.4 0.00019 38.2 2.1 17 34-50 18-34 (197)
250 2eyu_A Twitching motility prot 53.2 4 0.00014 41.0 1.1 26 24-51 16-41 (261)
251 4b4t_H 26S protease regulatory 53.1 6.1 0.00021 43.0 2.6 22 36-59 244-265 (467)
252 1w4r_A Thymidine kinase; type 53.1 13 0.00043 35.5 4.5 38 35-76 20-57 (195)
253 3tr0_A Guanylate kinase, GMP k 53.0 4.9 0.00017 38.1 1.7 19 33-51 5-23 (205)
254 3vaa_A Shikimate kinase, SK; s 52.9 5.5 0.00019 37.8 2.0 33 19-51 8-41 (199)
255 2v9p_A Replication protein E1; 52.7 3.4 0.00012 42.5 0.6 27 24-50 115-141 (305)
256 1w36_B RECB, exodeoxyribonucle 52.6 17 0.00058 44.9 6.8 49 36-85 17-74 (1180)
257 2j41_A Guanylate kinase; GMP, 51.8 5.2 0.00018 37.9 1.7 18 33-50 4-21 (207)
258 3lw7_A Adenylate kinase relate 51.8 5.5 0.00019 36.3 1.8 14 37-50 3-16 (179)
259 2dhr_A FTSH; AAA+ protein, hex 51.7 14 0.00046 40.9 5.2 34 18-51 36-80 (499)
260 2z43_A DNA repair and recombin 51.5 14 0.00049 38.1 5.2 24 34-57 106-129 (324)
261 2qor_A Guanylate kinase; phosp 51.3 4.6 0.00016 38.6 1.2 20 31-50 8-27 (204)
262 1kht_A Adenylate kinase; phosp 50.9 6.3 0.00022 36.7 2.1 16 35-50 3-18 (192)
263 1ry6_A Internal kinesin; kines 50.9 12 0.0004 39.5 4.3 36 18-53 61-103 (360)
264 3a8t_A Adenylate isopentenyltr 50.5 7.6 0.00026 40.5 2.8 16 36-51 41-56 (339)
265 3exa_A TRNA delta(2)-isopenten 49.4 8.2 0.00028 39.8 2.7 17 35-51 3-19 (322)
266 2qmh_A HPR kinase/phosphorylas 49.0 7.2 0.00025 37.4 2.1 16 36-51 35-50 (205)
267 3trf_A Shikimate kinase, SK; a 49.0 7.1 0.00024 36.3 2.1 17 35-51 5-21 (185)
268 2zr9_A Protein RECA, recombina 48.9 16 0.00055 38.2 5.1 41 33-77 59-99 (349)
269 3ice_A Transcription terminati 48.9 12 0.00042 39.7 4.1 48 5-52 136-191 (422)
270 1qvr_A CLPB protein; coiled co 48.7 10 0.00035 45.1 3.9 35 19-53 173-209 (854)
271 2i1q_A DNA repair and recombin 48.4 16 0.00054 37.6 4.9 23 35-57 98-120 (322)
272 1u94_A RECA protein, recombina 48.3 21 0.00071 37.5 5.8 41 34-78 62-102 (356)
273 3hr8_A Protein RECA; alpha and 48.0 18 0.00062 38.0 5.2 42 34-79 60-101 (356)
274 3io5_A Recombination and repai 48.0 19 0.00065 37.2 5.2 41 37-79 30-70 (333)
275 2l8b_A Protein TRAI, DNA helic 47.9 33 0.0011 32.2 6.4 69 10-82 26-95 (189)
276 3u4q_B ATP-dependent helicase/ 47.9 14 0.00049 45.4 5.2 40 38-78 4-43 (1166)
277 1v5w_A DMC1, meiotic recombina 47.9 14 0.00048 38.5 4.4 23 35-57 122-144 (343)
278 3kb2_A SPBC2 prophage-derived 47.9 7 0.00024 35.7 1.8 15 37-51 3-17 (173)
279 3nwj_A ATSK2; P loop, shikimat 47.9 9.8 0.00033 37.8 3.0 30 22-51 32-64 (250)
280 2c95_A Adenylate kinase 1; tra 47.2 9.2 0.00032 35.8 2.6 18 33-50 7-24 (196)
281 1lvg_A Guanylate kinase, GMP k 47.0 7.8 0.00027 36.8 2.1 18 34-51 3-20 (198)
282 1z6g_A Guanylate kinase; struc 46.8 8 0.00028 37.4 2.2 24 27-50 15-38 (218)
283 2r2a_A Uncharacterized protein 46.6 6.3 0.00022 37.8 1.3 14 227-240 87-100 (199)
284 1ex7_A Guanylate kinase; subst 46.5 8.1 0.00028 36.5 2.1 15 36-50 2-16 (186)
285 3iij_A Coilin-interacting nucl 46.4 9.9 0.00034 35.2 2.7 18 34-51 10-27 (180)
286 3hjh_A Transcription-repair-co 45.8 27 0.00093 38.3 6.4 50 34-90 13-62 (483)
287 2v54_A DTMP kinase, thymidylat 45.2 8.5 0.00029 36.3 2.0 18 34-51 3-20 (204)
288 1zak_A Adenylate kinase; ATP:A 44.9 7.5 0.00025 37.6 1.6 17 34-50 4-20 (222)
289 1zd8_A GTP:AMP phosphotransfer 44.7 8.2 0.00028 37.4 1.9 19 33-51 5-23 (227)
290 1htw_A HI0065; nucleotide-bind 44.2 4.7 0.00016 37.0 -0.0 18 33-50 31-48 (158)
291 3foz_A TRNA delta(2)-isopenten 43.9 12 0.00042 38.4 3.1 16 36-51 11-26 (316)
292 4ag6_A VIRB4 ATPase, type IV s 43.7 21 0.00072 37.8 5.1 41 34-78 34-74 (392)
293 1xp8_A RECA protein, recombina 43.6 25 0.00087 37.0 5.6 41 34-78 73-113 (366)
294 2x8a_A Nuclear valosin-contain 43.4 10 0.00035 38.2 2.4 15 37-51 46-60 (274)
295 3tlx_A Adenylate kinase 2; str 43.0 11 0.00037 37.2 2.4 15 36-50 30-44 (243)
296 1ly1_A Polynucleotide kinase; 43.0 9.1 0.00031 35.2 1.8 14 37-50 4-17 (181)
297 3e2i_A Thymidine kinase; Zn-bi 43.0 22 0.00075 34.4 4.5 42 33-78 26-67 (219)
298 2ehv_A Hypothetical protein PH 43.0 22 0.00076 34.5 4.8 24 31-54 26-49 (251)
299 3cm0_A Adenylate kinase; ATP-b 43.0 7.4 0.00025 36.2 1.2 17 34-50 3-19 (186)
300 2jaq_A Deoxyguanosine kinase; 43.0 9.1 0.00031 36.0 1.8 14 37-50 2-15 (205)
301 1nks_A Adenylate kinase; therm 42.7 8.6 0.00029 35.8 1.6 14 37-50 3-16 (194)
302 1svm_A Large T antigen; AAA+ f 42.6 10 0.00035 40.2 2.3 20 31-50 165-184 (377)
303 3m6a_A ATP-dependent protease 42.2 19 0.00064 40.3 4.5 19 35-53 108-126 (543)
304 3jvv_A Twitching mobility prot 41.4 10 0.00035 39.9 2.1 19 33-51 121-139 (356)
305 2plr_A DTMP kinase, probable t 41.3 9 0.00031 36.3 1.5 17 35-51 4-20 (213)
306 1qhx_A CPT, protein (chloramph 41.0 11 0.00038 34.6 2.1 17 35-51 3-19 (178)
307 4edh_A DTMP kinase, thymidylat 40.9 47 0.0016 31.8 6.6 18 34-51 5-22 (213)
308 2rhm_A Putative kinase; P-loop 40.6 8.9 0.0003 35.8 1.3 17 35-51 5-21 (193)
309 1s96_A Guanylate kinase, GMP k 40.6 11 0.00038 36.5 2.0 20 31-50 12-31 (219)
310 1m7g_A Adenylylsulfate kinase; 39.9 12 0.0004 35.8 2.1 19 32-50 22-40 (211)
311 1zp6_A Hypothetical protein AT 39.8 7 0.00024 36.5 0.4 19 32-50 6-24 (191)
312 3a00_A Guanylate kinase, GMP k 39.7 12 0.00043 34.8 2.2 15 36-50 2-16 (186)
313 2wwf_A Thymidilate kinase, put 39.7 11 0.00038 35.8 1.9 18 34-51 9-26 (212)
314 1kag_A SKI, shikimate kinase I 39.6 12 0.00042 34.1 2.1 16 35-50 4-19 (173)
315 3vkg_A Dynein heavy chain, cyt 39.5 25 0.00085 47.5 5.6 38 18-55 889-926 (3245)
316 1f9v_A Kinesin-like protein KA 39.5 19 0.00065 37.6 3.8 36 18-53 63-103 (347)
317 2z0h_A DTMP kinase, thymidylat 39.4 11 0.00038 35.2 1.8 15 37-51 2-16 (197)
318 1ny5_A Transcriptional regulat 39.1 19 0.00066 38.2 3.8 18 34-51 159-176 (387)
319 4eaq_A DTMP kinase, thymidylat 39.1 44 0.0015 32.4 6.2 18 34-51 25-42 (229)
320 3dm5_A SRP54, signal recogniti 39.0 54 0.0019 35.4 7.3 20 36-55 101-120 (443)
321 3c8u_A Fructokinase; YP_612366 38.9 5.6 0.00019 38.1 -0.4 28 23-50 6-37 (208)
322 4eun_A Thermoresistant glucoki 38.8 12 0.00042 35.3 2.0 18 34-51 28-45 (200)
323 1znw_A Guanylate kinase, GMP k 38.8 12 0.00042 35.6 2.1 21 31-51 16-36 (207)
324 1f2t_A RAD50 ABC-ATPase; DNA d 38.7 19 0.00063 32.5 3.1 24 36-61 24-47 (149)
325 1tev_A UMP-CMP kinase; ploop, 38.6 11 0.00037 35.1 1.6 17 35-51 3-19 (196)
326 3lnc_A Guanylate kinase, GMP k 38.4 11 0.00038 36.6 1.6 19 33-51 25-43 (231)
327 4tmk_A Protein (thymidylate ki 38.3 64 0.0022 30.9 7.1 18 34-51 2-19 (213)
328 1aky_A Adenylate kinase; ATP:A 38.3 13 0.00043 35.8 2.0 16 35-50 4-19 (220)
329 3tmk_A Thymidylate kinase; pho 38.2 12 0.00041 36.3 1.8 18 34-51 4-21 (216)
330 1rj9_A FTSY, signal recognitio 38.1 35 0.0012 34.9 5.4 37 35-75 102-138 (304)
331 1ypw_A Transitional endoplasmi 38.0 13 0.00043 43.9 2.4 17 35-51 238-254 (806)
332 1rz3_A Hypothetical protein rb 37.9 24 0.00082 33.3 4.0 28 24-51 6-38 (201)
333 4gp7_A Metallophosphoesterase; 37.8 11 0.00039 34.6 1.6 19 33-51 7-25 (171)
334 3dc4_A Kinesin-like protein NO 37.8 33 0.0011 35.7 5.2 35 18-52 72-112 (344)
335 1nn5_A Similar to deoxythymidy 37.8 12 0.00042 35.5 1.8 18 34-51 8-25 (215)
336 2ze6_A Isopentenyl transferase 37.7 12 0.00041 37.1 1.8 15 37-51 3-17 (253)
337 2y65_A Kinesin, kinesin heavy 37.6 24 0.00081 37.2 4.1 36 18-53 62-103 (365)
338 2orv_A Thymidine kinase; TP4A 37.5 30 0.001 33.8 4.6 40 34-77 18-57 (234)
339 2vp4_A Deoxynucleoside kinase; 37.3 11 0.00039 36.6 1.6 16 35-50 20-35 (230)
340 2ewv_A Twitching motility prot 37.2 11 0.00037 40.0 1.5 20 32-51 133-152 (372)
341 1p5z_B DCK, deoxycytidine kina 37.1 14 0.00046 36.8 2.1 32 19-50 7-39 (263)
342 1y63_A LMAJ004144AAA protein; 37.1 17 0.00057 33.9 2.6 17 35-51 10-26 (184)
343 4etp_A Kinesin-like protein KA 36.7 22 0.00077 37.9 3.8 36 18-53 119-159 (403)
344 1zuh_A Shikimate kinase; alpha 36.6 14 0.00048 33.6 2.0 16 36-51 8-23 (168)
345 2rep_A Kinesin-like protein KI 36.6 22 0.00077 37.5 3.8 36 18-53 94-134 (376)
346 3t0q_A AGR253WP; kinesin, alph 36.5 21 0.00073 37.3 3.6 36 18-53 64-104 (349)
347 3v9p_A DTMP kinase, thymidylat 36.3 12 0.0004 36.7 1.4 19 33-51 23-41 (227)
348 3fb4_A Adenylate kinase; psych 35.9 14 0.00047 35.3 1.8 15 37-51 2-16 (216)
349 3dl0_A Adenylate kinase; phosp 35.7 14 0.00047 35.3 1.8 15 37-51 2-16 (216)
350 3kta_A Chromosome segregation 35.6 23 0.00079 32.6 3.4 24 36-61 27-50 (182)
351 1bg2_A Kinesin; motor protein, 35.5 27 0.00093 36.1 4.1 36 18-53 55-96 (325)
352 1ak2_A Adenylate kinase isoenz 35.5 15 0.0005 35.8 2.0 15 36-50 17-31 (233)
353 2yvu_A Probable adenylyl-sulfa 35.4 13 0.00044 34.6 1.5 17 35-51 13-29 (186)
354 1ukz_A Uridylate kinase; trans 35.3 14 0.00048 34.8 1.8 16 36-51 16-31 (203)
355 2cdn_A Adenylate kinase; phosp 35.3 15 0.00052 34.6 2.1 15 37-51 22-36 (201)
356 3crm_A TRNA delta(2)-isopenten 35.2 20 0.00068 37.1 3.0 16 36-51 6-21 (323)
357 2pbr_A DTMP kinase, thymidylat 35.1 14 0.00049 34.2 1.8 14 37-50 2-15 (195)
358 2pez_A Bifunctional 3'-phospho 35.1 16 0.00053 33.8 2.0 18 34-51 4-21 (179)
359 1xjc_A MOBB protein homolog; s 34.8 46 0.0016 30.7 5.2 39 36-78 5-43 (169)
360 1e6c_A Shikimate kinase; phosp 34.8 16 0.00055 33.3 2.1 16 36-51 3-18 (173)
361 3kl4_A SRP54, signal recogniti 34.6 35 0.0012 36.8 5.0 36 37-76 99-135 (433)
362 2xb4_A Adenylate kinase; ATP-b 34.6 15 0.0005 35.6 1.8 14 37-50 2-15 (223)
363 1qf9_A UMP/CMP kinase, protein 34.5 14 0.00047 34.3 1.6 16 36-51 7-22 (194)
364 1gtv_A TMK, thymidylate kinase 34.1 9.5 0.00033 36.3 0.4 14 37-50 2-15 (214)
365 2zfi_A Kinesin-like protein KI 33.9 21 0.00072 37.6 3.0 35 19-53 68-108 (366)
366 3cf2_A TER ATPase, transitiona 33.9 17 0.00058 42.6 2.5 16 36-51 239-254 (806)
367 3eph_A TRNA isopentenyltransfe 33.8 23 0.0008 37.7 3.3 15 37-51 4-18 (409)
368 1knq_A Gluconate kinase; ALFA/ 33.7 18 0.00061 33.1 2.2 17 35-51 8-24 (175)
369 3lv8_A DTMP kinase, thymidylat 33.6 16 0.00053 36.0 1.8 18 34-51 26-43 (236)
370 1e4v_A Adenylate kinase; trans 33.5 15 0.0005 35.2 1.6 15 37-51 2-16 (214)
371 3b9q_A Chloroplast SRP recepto 33.5 32 0.0011 35.1 4.2 36 36-75 101-136 (302)
372 4a74_A DNA repair and recombin 33.5 14 0.00047 35.5 1.4 24 31-54 21-44 (231)
373 3uie_A Adenylyl-sulfate kinase 33.1 18 0.0006 34.2 2.1 19 33-51 23-41 (200)
374 2pt5_A Shikimate kinase, SK; a 33.1 16 0.00056 33.0 1.8 15 37-51 2-16 (168)
375 2vhj_A Ntpase P4, P4; non- hyd 33.0 24 0.0008 36.5 3.1 19 35-53 123-141 (331)
376 3tqc_A Pantothenate kinase; bi 32.8 32 0.0011 35.5 4.1 31 21-51 72-108 (321)
377 3be4_A Adenylate kinase; malar 32.7 17 0.00059 34.8 2.0 15 36-50 6-20 (217)
378 3auy_A DNA double-strand break 32.3 22 0.00075 37.5 2.9 25 36-62 26-50 (371)
379 1x88_A Kinesin-like protein KI 31.9 23 0.00077 37.3 2.8 36 18-53 66-107 (359)
380 3e70_C DPA, signal recognition 31.9 38 0.0013 35.0 4.6 17 35-51 129-145 (328)
381 3t61_A Gluconokinase; PSI-biol 31.8 22 0.00075 33.5 2.5 16 36-51 19-34 (202)
382 3dzd_A Transcriptional regulat 31.6 41 0.0014 35.3 4.8 29 23-51 140-168 (368)
383 1vma_A Cell division protein F 31.5 51 0.0017 33.7 5.4 35 36-74 105-139 (306)
384 3cmu_A Protein RECA, recombina 31.2 28 0.00095 45.0 3.9 41 34-78 1426-1466(2050)
385 2h58_A Kinesin-like protein KI 31.2 19 0.00066 37.3 2.1 36 18-53 59-99 (330)
386 3a4m_A L-seryl-tRNA(SEC) kinas 31.2 16 0.00055 36.3 1.5 17 35-51 4-20 (260)
387 2vli_A Antibiotic resistance p 30.9 14 0.00048 34.0 0.9 17 35-51 5-21 (183)
388 1gvn_B Zeta; postsegregational 30.6 25 0.00087 35.5 2.9 14 37-50 35-48 (287)
389 3qks_A DNA double-strand break 30.4 29 0.00099 33.0 3.1 25 36-62 24-48 (203)
390 4a14_A Kinesin, kinesin-like p 30.3 32 0.0011 35.8 3.7 35 18-52 61-101 (344)
391 4hlc_A DTMP kinase, thymidylat 30.1 18 0.00061 34.6 1.6 16 35-50 2-17 (205)
392 1zu4_A FTSY; GTPase, signal re 30.1 45 0.0015 34.3 4.7 33 37-73 107-139 (320)
393 3lda_A DNA repair protein RAD5 30.1 34 0.0012 36.5 3.9 21 34-54 177-197 (400)
394 3nwn_A Kinesin-like protein KI 30.0 28 0.00095 36.6 3.1 34 20-53 84-123 (359)
395 3d3q_A TRNA delta(2)-isopenten 30.0 27 0.00094 36.3 3.0 16 36-51 8-23 (340)
396 1pzn_A RAD51, DNA repair and r 29.7 27 0.00092 36.5 3.0 24 34-57 130-153 (349)
397 2cbz_A Multidrug resistance-as 29.5 16 0.00053 35.9 1.0 43 3-50 4-46 (237)
398 2og2_A Putative signal recogni 29.5 40 0.0014 35.3 4.3 37 35-75 157-193 (359)
399 3cmw_A Protein RECA, recombina 29.4 45 0.0015 42.4 5.3 41 32-76 31-71 (1706)
400 3b6u_A Kinesin-like protein KI 29.4 23 0.00078 37.4 2.3 36 18-53 79-120 (372)
401 2wbe_C Bipolar kinesin KRP-130 29.4 26 0.00087 37.0 2.7 36 18-53 78-119 (373)
402 2bbw_A Adenylate kinase 4, AK4 29.2 22 0.00075 34.8 2.1 16 35-50 27-42 (246)
403 2bdt_A BH3686; alpha-beta prot 29.2 17 0.00058 33.8 1.2 15 36-50 3-17 (189)
404 2ocp_A DGK, deoxyguanosine kin 29.1 17 0.00059 35.4 1.3 16 35-50 2-17 (241)
405 3tif_A Uncharacterized ABC tra 29.1 16 0.00055 35.8 1.0 39 31-73 27-65 (235)
406 1tf7_A KAIC; homohexamer, hexa 28.9 52 0.0018 36.4 5.4 50 31-85 277-326 (525)
407 3gbj_A KIF13B protein; kinesin 28.8 39 0.0013 35.4 4.0 36 18-53 70-111 (354)
408 3asz_A Uridine kinase; cytidin 28.4 18 0.00063 34.2 1.3 18 34-51 5-22 (211)
409 1goj_A Kinesin, kinesin heavy 28.3 26 0.0009 36.7 2.6 36 18-53 58-99 (355)
410 1odf_A YGR205W, hypothetical 3 28.1 35 0.0012 34.5 3.5 15 37-51 33-47 (290)
411 1t5c_A CENP-E protein, centrom 27.7 22 0.00076 37.1 1.9 36 18-53 55-96 (349)
412 3lre_A Kinesin-like protein KI 27.4 24 0.00081 37.0 2.0 36 18-53 83-124 (355)
413 2owm_A Nckin3-434, related to 27.4 34 0.0012 37.0 3.3 36 18-53 114-155 (443)
414 3bfn_A Kinesin-like protein KI 27.2 28 0.00097 36.9 2.6 36 18-53 76-117 (388)
415 2pze_A Cystic fibrosis transme 27.2 18 0.00061 35.3 0.9 43 3-50 7-49 (229)
416 1sgw_A Putative ABC transporte 27.1 18 0.00063 34.8 1.0 21 31-51 31-51 (214)
417 3ld9_A DTMP kinase, thymidylat 27.0 22 0.00074 34.6 1.5 17 35-51 21-37 (223)
418 2vvg_A Kinesin-2; motor protei 26.8 25 0.00085 36.8 2.0 35 18-52 67-107 (350)
419 2ff7_A Alpha-hemolysin translo 26.6 18 0.00063 35.7 1.0 63 2-73 7-69 (247)
420 2qm8_A GTPase/ATPase; G protei 26.5 52 0.0018 34.0 4.5 41 32-76 52-92 (337)
421 1v8k_A Kinesin-like protein KI 26.4 25 0.00085 37.6 2.0 36 18-53 132-173 (410)
422 2pcj_A ABC transporter, lipopr 26.4 17 0.0006 35.2 0.7 60 3-73 5-64 (224)
423 3cf2_A TER ATPase, transitiona 26.3 30 0.001 40.5 2.8 22 36-59 512-533 (806)
424 3qf7_A RAD50; ABC-ATPase, ATPa 26.3 34 0.0012 35.9 3.1 24 37-62 25-48 (365)
425 3f8t_A Predicted ATPase involv 26.0 26 0.0009 38.2 2.1 31 20-51 217-254 (506)
426 2ghi_A Transport protein; mult 25.9 20 0.00067 35.8 1.0 46 2-51 17-62 (260)
427 1ye8_A Protein THEP1, hypothet 25.8 26 0.00089 32.6 1.8 15 37-51 2-16 (178)
428 2i3b_A HCR-ntpase, human cance 25.7 30 0.001 32.5 2.2 17 35-51 1-17 (189)
429 2nr8_A Kinesin-like protein KI 25.6 41 0.0014 35.2 3.5 35 19-53 82-122 (358)
430 3b5x_A Lipid A export ATP-bind 25.4 17 0.00059 40.9 0.5 62 3-73 342-403 (582)
431 1tq4_A IIGP1, interferon-induc 25.1 48 0.0016 35.5 3.9 28 23-50 37-84 (413)
432 1mv5_A LMRA, multidrug resista 24.9 18 0.00061 35.6 0.5 61 3-73 2-62 (243)
433 1via_A Shikimate kinase; struc 24.9 30 0.001 31.6 2.1 14 37-50 6-19 (175)
434 1g6h_A High-affinity branched- 24.8 21 0.00071 35.5 1.0 60 3-73 8-67 (257)
435 1ihu_A Arsenical pump-driving 24.8 65 0.0022 36.1 5.2 36 36-75 9-45 (589)
436 1c9k_A COBU, adenosylcobinamid 24.8 60 0.002 30.3 4.1 32 38-76 2-33 (180)
437 2jeo_A Uridine-cytidine kinase 24.6 27 0.00091 34.2 1.7 30 22-51 12-41 (245)
438 3u06_A Protein claret segregat 24.5 29 0.001 37.1 2.1 35 18-52 117-156 (412)
439 2qi9_C Vitamin B12 import ATP- 24.4 21 0.00073 35.3 0.9 19 32-50 23-41 (249)
440 2heh_A KIF2C protein; kinesin, 24.3 29 0.001 36.7 2.0 36 18-53 112-153 (387)
441 3cmu_A Protein RECA, recombina 24.3 59 0.002 42.0 5.1 42 33-78 1079-1120(2050)
442 2d2e_A SUFC protein; ABC-ATPas 24.3 22 0.00074 35.2 1.0 42 3-51 4-45 (250)
443 2xxa_A Signal recognition part 24.2 71 0.0024 34.4 5.1 34 37-73 102-135 (433)
444 1ji0_A ABC transporter; ATP bi 24.2 22 0.00074 34.9 1.0 60 3-73 7-66 (240)
445 1vpl_A ABC transporter, ATP-bi 24.1 22 0.00076 35.3 1.0 39 31-73 37-75 (256)
446 2iyv_A Shikimate kinase, SK; t 24.0 33 0.0011 31.5 2.2 16 36-51 3-18 (184)
447 3cob_A Kinesin heavy chain-lik 24.0 26 0.00087 37.0 1.5 36 18-53 58-98 (369)
448 2v3c_C SRP54, signal recogniti 23.8 49 0.0017 35.6 3.8 17 37-53 101-117 (432)
449 2zu0_C Probable ATP-dependent 23.7 23 0.00078 35.5 1.0 21 31-51 42-62 (267)
450 2nq2_C Hypothetical ABC transp 23.7 22 0.00077 35.2 1.0 42 3-50 5-46 (253)
451 1cke_A CK, MSSA, protein (cyti 23.7 32 0.0011 32.8 2.1 16 35-50 5-20 (227)
452 3bs4_A Uncharacterized protein 23.6 54 0.0019 32.6 3.8 49 35-89 21-70 (260)
453 1vht_A Dephospho-COA kinase; s 23.6 35 0.0012 32.5 2.3 16 36-51 5-20 (218)
454 2yz2_A Putative ABC transporte 23.6 23 0.00079 35.4 1.0 68 1-74 1-68 (266)
455 1ls1_A Signal recognition part 23.5 71 0.0024 32.3 4.7 35 36-74 99-133 (295)
456 2ixe_A Antigen peptide transpo 23.4 23 0.0008 35.5 1.0 63 3-73 17-79 (271)
457 3cio_A ETK, tyrosine-protein k 23.3 1.6E+02 0.0054 29.7 7.4 34 36-73 105-139 (299)
458 2qt1_A Nicotinamide riboside k 23.2 31 0.0011 32.5 1.8 16 35-50 21-36 (207)
459 1sq5_A Pantothenate kinase; P- 23.2 54 0.0019 33.3 3.8 18 34-51 79-96 (308)
460 1z6t_A APAF-1, apoptotic prote 23.1 42 0.0015 37.5 3.3 29 24-52 132-164 (591)
461 2wsm_A Hydrogenase expression/ 23.0 58 0.002 30.7 3.8 33 18-50 11-45 (221)
462 1tf7_A KAIC; homohexamer, hexa 23.0 37 0.0013 37.6 2.6 51 24-76 27-78 (525)
463 3gfo_A Cobalt import ATP-bindi 22.9 23 0.0008 35.6 0.9 62 3-74 8-69 (275)
464 1b0u_A Histidine permease; ABC 22.6 25 0.00085 35.1 1.0 42 3-51 7-48 (262)
465 3p32_A Probable GTPase RV1496/ 22.3 1.4E+02 0.0049 30.8 7.0 34 19-52 59-96 (355)
466 3bfv_A CAPA1, CAPB2, membrane 22.1 1.9E+02 0.0064 28.6 7.6 48 22-73 63-117 (271)
467 1ypw_A Transitional endoplasmi 21.9 28 0.00096 40.9 1.5 23 35-59 511-533 (806)
468 4g1u_C Hemin import ATP-bindin 21.8 26 0.00088 35.1 1.0 40 31-74 33-72 (266)
469 3cmw_A Protein RECA, recombina 21.7 56 0.0019 41.5 4.1 37 35-75 732-768 (1706)
470 2ihy_A ABC transporter, ATP-bi 21.7 26 0.00088 35.3 0.9 42 2-50 21-62 (279)
471 2olj_A Amino acid ABC transpor 21.5 27 0.00092 34.9 1.0 60 3-73 25-84 (263)
472 3l0o_A Transcription terminati 21.4 62 0.0021 34.3 3.8 42 11-52 146-192 (427)
473 1byi_A Dethiobiotin synthase; 21.3 89 0.003 29.5 4.8 32 38-73 5-36 (224)
474 3nh6_A ATP-binding cassette SU 21.0 23 0.0008 36.2 0.5 61 3-73 54-114 (306)
475 2bbs_A Cystic fibrosis transme 20.9 26 0.0009 35.5 0.8 18 34-51 63-80 (290)
476 3umf_A Adenylate kinase; rossm 20.5 29 0.001 33.5 1.0 17 34-50 28-44 (217)
477 1ltq_A Polynucleotide kinase; 20.2 37 0.0013 34.1 1.8 15 37-51 4-18 (301)
No 1
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=100.00 E-value=9.9e-90 Score=796.85 Aligned_cols=596 Identities=21% Similarity=0.318 Sum_probs=417.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccchhhHHHHHHHHHhhhhh
Q 004358 14 YDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLHNY 93 (759)
Q Consensus 14 y~~~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~l~~~ 93 (759)
|+| ||+|++||.+|++++.+++++++|||||||||++||+|++.++... +. ||+|+|||++|++|+++|++++...
T Consensus 2 ~~~-R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~--~~-kvli~t~T~~l~~Qi~~el~~l~~~ 77 (620)
T 4a15_A 2 YEN-RQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER--KL-KVLYLVRTNSQEEQVIKELRSLSST 77 (620)
T ss_dssp ----CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH--TC-EEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCC-CHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc--CC-eEEEECCCHHHHHHHHHHHHHHhhc
Confidence 665 9999999999999999999999999999999999999999998653 46 9999999999999999999998542
Q ss_pred cccCCCCccceEEEeecCCccccc-chHHhhhcccccHHH---HHHHhhhHHHHHhhhcCCCCCCCcCccchHHhhhc-C
Q 004358 94 QTRHLGPAAKILAIGLSSRKNLCV-NSRVLAAENRDSVDA---ACRKRTASWVRALAAENPNIETCEFFENYEKAASA-A 168 (759)
Q Consensus 94 ~~~~~g~~~~~~~~~l~gr~~lC~-~~~~~~~~~~~~~~~---~c~~l~~~w~~~t~~~~~~~~~c~~~~~~~~~~~~-~ 168 (759)
.+++++.|+||+++|+ ++.+....+ ...+. .|..+...|.. + +...|+||.+.....+. .
T Consensus 78 --------~~~~~~~l~gr~~lC~~~~~~~~~~~-~~~~~~~~~C~~l~~~~~~----~--~~~~C~~~~~~~~~gd~~~ 142 (620)
T 4a15_A 78 --------MKIRAIPMQGRVNMCILYRMVDDLHE-INAESLAKFCNMKKREVMA----G--NEAACPYFNFKIRSDETKR 142 (620)
T ss_dssp --------SCCCEEECCCHHHHCSSHHHHCCCSS-CCHHHHHHHHHHHHHHHHT----T--CTTSSTTCSGGGGCHHHHH
T ss_pred --------cCeEEEEEECCCcccccChhhhhccc-chhhhHHHHHHHHHhcccc----C--CCCCCCcccccCcccchhH
Confidence 3688999999999999 988765433 23343 89877654421 1 23689999876431110 0
Q ss_pred CCCCCCCCHHHHHHhcccCCCcchHHHHhhcccCeEEEecCccccCHHHHhHhhh---ccCCCcEEEEcCCCChhHHhhh
Q 004358 169 VLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISK---EMQKESVVVFDEAHNIDNVCIE 245 (759)
Q Consensus 169 ~~~~~~~~~e~~~~~~~~~~~Cpy~~ar~~~~~adiiv~n~~~ll~~~~~~~~~~---~l~~~~ivI~DEAHnl~~~~~~ 245 (759)
.+..++++++++++.|+.++.||||.+|+.+..|||||+|||||||+.+++.+.. ..+++++|||||||||+|+|++
T Consensus 143 ~l~~~~~die~l~~~~~~~~~CPy~~aR~~~~~ADvVV~ny~ylld~~~r~~~~~~~~i~p~~~ivI~DEAHNL~d~a~~ 222 (620)
T 4a15_A 143 FLFDELPTAEEFYDYGERNNVCPYESMKAALPDADIVIAPYAYFLNRSVAEKFLSHWGVSRNQIVIILDEAHNLPDIGRS 222 (620)
T ss_dssp HHHHHCCCHHHHHHHHHHTTCCHHHHHHHHGGGCSEEEEEHHHHTCHHHHHHHHHHHTCCGGGEEEEETTGGGHHHHHHH
T ss_pred HhccCCCCHHHHHHHhhhcCCCccHHHHHHhhcCCEEEeCchhhcCHHHHHHHHHhhccCcCCeEEEEECCCchHHHHHH
Confidence 1133578999999999999999999999999999999999999999998764322 1368999999999999999999
Q ss_pred hcceeecHHHHHHHHHHHHHHHHHHHHhhh-hchhHHHHH----HHHHHHHHHhcCCCccchhcccCCCCChhhhhhccC
Q 004358 246 ALSVSVRRQTLEGATRNLSRINQEIERFKA-TDAGRLRAE----YNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVP 320 (759)
Q Consensus 246 ~~s~~is~~~l~~~~~~l~~~~~~~~~~~~-~~~~~l~~~----~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (759)
++|.+++...|..+.+++.++... .+.. .....+.+. +..+...+.. . .. .
T Consensus 223 ~~S~~ls~~~l~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~------------~--~~-------~- 278 (620)
T 4a15_A 223 IGSFRISVESLNRADREAQAYGDP--ELSQKIHVSDLIEMIRSALQSMVSERCG------------K--GD-------V- 278 (620)
T ss_dssp HHCEEEEHHHHHHHHHHHHHTTCC--EEETTEEHHHHHHHHHHHHHHHHHHHCS------------S--SC-------E-
T ss_pred hhcceeCHHHHHHHHHHHHHHHhh--hhhhhHHHHHHHHHHHHHHHHHHHHhhc------------c--cc-------c-
Confidence 999999999999988877653210 0000 001111111 1111111110 0 00 0
Q ss_pred cchhchHHHHHHHHHHHHHHHhhhhcccccccChhHHHHHHHHhhccccchhhhhHHHHHHHHHHhhccCCCccchhHHH
Q 004358 321 GNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTI 400 (759)
Q Consensus 321 ~~i~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~rl~~l~~~l~~~~~~~~~~l~~i 400 (759)
.+ ....+...+..+...... ....++..+.. ..+.+..... .........+..+
T Consensus 279 -~~-~~~~l~~~~~~~~~~~~~----------~l~~~~~~l~~-----------~~~~~~~~~~---~~~~~~~~~~~~~ 332 (620)
T 4a15_A 279 -RI-RFQEFMEYMRIMNKRSER----------EIRSLLNYLYL-----------FGEYVENEKE---KVGKVPFSYCSSV 332 (620)
T ss_dssp -EE-CTHHHHHHHHHHHTCCHH----------HHHHHHHHHHH-----------HHHHHHHHHH---HTTSCCCCHHHHH
T ss_pred -CC-ChHHHHHHHHHhhcccHH----------HHHHHHHHHHH-----------HHHHHHhhcc---ccccccccHHHHH
Confidence 00 011111111111000000 00001111100 0000000000 0001111234556
Q ss_pred HhHHHHhcccc-CCeEEEEecCCCCCCCCCCCeEEEEccCcccccHHHhhccCEEEEecCCCCCCcchhhhhCCCCcccc
Q 004358 401 CDFATLVGTYT-RGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSR 479 (759)
Q Consensus 401 ~~f~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~l~~s~~~~~l~~~~~svIltSgTL~p~~~f~~~lg~~~~~~~ 479 (759)
.+|+..+...+ .+++.|++... +..|+++|+||+..|+ ++ .++++|||||||+|+++|.+.||++ ....
T Consensus 333 ~~fl~~~~~~~~~~~~~~~~~~~-------~~~l~~~~l~~~~~l~-~~-~~~~~il~SaTL~p~~~~~~~lGl~-~~~~ 402 (620)
T 4a15_A 333 ASRIIAFSDQDEEKYAAILSPED-------GGYMQAACLDPSGILE-VL-KESKTIHMSGTLDPFDFYSDITGFE-IPFK 402 (620)
T ss_dssp HHHHHHHHTSCTTTEEEEEECGG-------GCEEEEEECCTHHHHG-GG-GGSEEEEEESSCCSHHHHHHHHCCC-CCEE
T ss_pred HHHHHHHhhcCCCCEEEEEEeCC-------CcEEEEEECCHHHHHH-HH-hCCeEEEEccCCCcHHHHHHHhCCC-ceee
Confidence 66665553333 37888887542 3789999999999999 99 9999999999999999999999998 6666
Q ss_pred cceeeccCCceeeEEeecCCCCCcceeccccCCChHHHHHHHHHHHHhhcccCCcEEEEecCHHHHHHHHHHHhhcccHH
Q 004358 480 SFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILK 559 (759)
Q Consensus 480 ~~~~~~~~~~~~~~ii~~g~~~~~l~s~f~~r~~~~~~~~~~~~l~~~~~~~~gg~lv~f~Sy~~l~~~~~~~~~~~~~~ 559 (759)
+++++++.++...+++ + .++++|+.|+ +.+.+++++.|.++++.+|||+|||||||++|+++++.|+.
T Consensus 403 ~~~spf~~~~~~~~~~-~-----~~~~~~~~r~-~~~~~~~~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~l~~----- 470 (620)
T 4a15_A 403 KIGEIFPPENRYIAYY-D-----GVSSKYDTLD-EKELDRMATVIEDIILKVKKNTIVYFPSYSLMDRVENRVSF----- 470 (620)
T ss_dssp ECCCCSCGGGEEEEEE-C-----CC-------C-HHHHHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHTSSCCS-----
T ss_pred ecCCCCCHHHeEEEEe-C-----CCCCcCCCCC-HHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHh-----
Confidence 7788888777665443 2 3667787775 46778999999999999999999999999999999999872
Q ss_pred HHhcCceEEEeCCCc--hhHHHHHHHHHHhccCCCCeEEEEeecCccccccccCCCCceEEEEEccCCCCcCCHHHHHHH
Q 004358 560 EIMQHKLVFIETQDV--VETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARL 637 (759)
Q Consensus 560 ~l~~~k~if~E~~~~--~~~~~~l~~f~~~~~~~~~aiL~gv~~G~~~EGiDf~~~~~r~vii~glPfp~~~dp~v~ar~ 637 (759)
+ . .. |.++. .++..++++|+ ++++|||||+||+|||||||+|+.+|+|||+|||||+| ||.+++|+
T Consensus 471 -~-~-~~---~~q~~~~~~~~~ll~~f~-----~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~~lPfp~~-~p~~~ar~ 538 (620)
T 4a15_A 471 -E-H-MK---EYRGIDQKELYSMLKKFR-----RDHGTIFAVSGGRLSEGINFPGNELEMIILAGLPFPRP-DAINRSLF 538 (620)
T ss_dssp -C-C-EE---CCTTCCSHHHHHHHHHHT-----TSCCEEEEETTSCC--------CCCCEEEESSCCCCCC-CHHHHHHH
T ss_pred -c-c-hh---ccCCCChhHHHHHHHHhc-----cCCcEEEEEecCceeccccCCCCceEEEEEEcCCCCCC-CHHHHHHH
Confidence 1 1 11 56653 46788899998 47899999999999999999999999999999999999 69999999
Q ss_pred HHHHHhcCCCcchh-hHHHHHHHHHHhcccccccCCCeeEEEEeecccCCccccCCCchHHHhhccccccCCCHHHHHHH
Q 004358 638 EYLRDTFQIKEGDF-LTFDALRQAAQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHI 716 (759)
Q Consensus 638 ~~l~~~~~~~~~~~-~~~~a~~~~~QaiGR~IR~~~D~g~iillD~R~~~~~~~~~lp~w~~~~~~~~~~~~~~~~~~~~ 716 (759)
+|++++++. +..| |..+|+++++||+||+|||++|||+|+|+|+|| ++|++.||+ ++.... ....
T Consensus 539 ~~~~~~~g~-~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~R~--~~~~~~LP~-~~~~~~----------~~~~ 604 (620)
T 4a15_A 539 DYYERKYGK-GWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILDKRA--GQFRKFIPD-MKKTSD----------PASD 604 (620)
T ss_dssp HHHHHHHSC-HHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEECGGG--GGGGGGSTT-CEEESC----------HHHH
T ss_pred HHHHHhhCC-CchHHhHHHHHHHHHHHhCccccCCCceEEEEEEccch--HHHHHhCCc-hhhhcC----------cHHH
Confidence 999998763 3333 555599999999999999999999999999999 779999999 765432 1346
Q ss_pred HHHHHHHhcC
Q 004358 717 AREFLRKMAQ 726 (759)
Q Consensus 717 ~~~Ff~~~~~ 726 (759)
+.+||+....
T Consensus 605 ~~~f~~~~~~ 614 (620)
T 4a15_A 605 IYNFFISAQA 614 (620)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHhChhh
Confidence 7899987643
No 2
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=100.00 E-value=3.6e-78 Score=695.50 Aligned_cols=528 Identities=20% Similarity=0.285 Sum_probs=381.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccchhhHHHHHHHHHhhhhh
Q 004358 14 YDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLHNY 93 (759)
Q Consensus 14 y~~~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~l~~~ 93 (759)
|+ +||+|.+||.+|++++.+++++++|||||||||++||+|++.. +. +|+|+|||++|++|+.+|++++.+
T Consensus 2 ~~-~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~------~~-~v~i~~pt~~l~~q~~~~~~~l~~- 72 (551)
T 3crv_A 2 VK-LRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV------KP-KVLFVVRTHNEFYPIYRDLTKIRE- 72 (551)
T ss_dssp CS-CCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH------CS-EEEEEESSGGGHHHHHHHHTTCCC-
T ss_pred CC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC------CC-eEEEEcCCHHHHHHHHHHHHHHhh-
Confidence 55 4999999999999999999999999999999999999999872 45 999999999999999999998743
Q ss_pred cccCCCCccceEEEeecCCcccccchHHhhhcccccHHHHHHHhhhHHHHHhhhcCCCCCCCcCccchHHhhhcCCCCCC
Q 004358 94 QTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPG 173 (759)
Q Consensus 94 ~~~~~g~~~~~~~~~l~gr~~lC~~~~~~~~~~~~~~~~~c~~l~~~w~~~t~~~~~~~~~c~~~~~~~~~~~~~~~~~~ 173 (759)
..+++++.++||+|+|+++.+. ..+ ... .| ..|+||.+..... .
T Consensus 73 -------~~~~~~~~l~gr~~~c~~~~~~-~~~-~~~--~c------------------~~c~~~~~~~~~g-------~ 116 (551)
T 3crv_A 73 -------KRNITFSFLVGKPSSCLYAEKG-AES-EDI--PC------------------KYCELKGSIVEVK-------T 116 (551)
T ss_dssp -------SSCCCEEECCCHHHHCTTBCTT-CCG-GGC--CG------------------GGCTTTTCCCCCC-------C
T ss_pred -------hcCccEEEEccccccCcCchhc-CCC-ccc--cc------------------CCCCCcccccccc-------c
Confidence 2357889999999999998765 321 111 34 2488876542211 1
Q ss_pred CCCHHHHHHh----cccCCCcchHHHHhhcccCeEEEecCccccCHHHHhHhhhccCCCcEEEEcCCCChhHHhhhhcce
Q 004358 174 VYTLQDLRAF----GKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSV 249 (759)
Q Consensus 174 ~~~~e~~~~~----~~~~~~Cpy~~ar~~~~~adiiv~n~~~ll~~~~~~~~~~~l~~~~ivI~DEAHnl~~~~~~~~s~ 249 (759)
..+++++.+. |..++.|||+.+|+.+..|||||+||+||+++..+..+. ..++..+|||||||||++ |++++|.
T Consensus 117 ~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~~~~l~~~~~~~~~~-~~~~~~~vIiDEAHnl~d-~~~~~s~ 194 (551)
T 3crv_A 117 DDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALTYPYFFIDRYREFID-IDLREYMIVIDEAHNLDK-VNELEER 194 (551)
T ss_dssp CSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEETHHHHCHHHHTTSC-CCSTTEEEEETTGGGGGG-GGGGGCE
T ss_pred cCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeCchHhcCHHHHHhcC-CCcCCeEEEEecccchHH-HHHhhce
Confidence 3344444433 447899999999999999999999999999998766432 235789999999999999 9999999
Q ss_pred eecHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHhcCCCccchhcccCCCCChhhhhhccCcchhchHHH
Q 004358 250 SVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHF 329 (759)
Q Consensus 250 ~is~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 329 (759)
+|+..++..+.+++...... ..+..+...+.+... ....+...+..+ +.+
T Consensus 195 ~ls~~~l~~~~~~l~~~~~~-------------~~l~~l~~~l~~~~~--~~~~~~~~~~~~---------------~~~ 244 (551)
T 3crv_A 195 SLSEITIQMAIKQSKSEESR-------------RILSKLLNQLREVVL--PDEKYIKVENVP---------------KLS 244 (551)
T ss_dssp EEEHHHHHHHHHHCSCHHHH-------------HHHHHHHHHHTTSCC--SCSSCEECSCCC---------------CCC
T ss_pred ecCHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHhh--ccccccccccCh---------------HHH
Confidence 99999999887765433110 112233333322100 000010000000 111
Q ss_pred HHHHHHHHHHHHhhhhcccccccChhHHHHHHHHhhccccchhhhhHHHHHHHHHHhhccCCCccchhHHHHhHHHHhcc
Q 004358 330 LHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGT 409 (759)
Q Consensus 330 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~rl~~l~~~l~~~~~~~~~~l~~i~~f~~~~~~ 409 (759)
.+.+..+.+.+.... ...... .......+..+.+|...+..
T Consensus 245 ~~~l~~l~~~l~~~~--------------~~~~~~-------------------------~~~~~~~~~~l~~~~~~~~~ 285 (551)
T 3crv_A 245 KEELEILADDYEDIR--------------KDSLKQ-------------------------GKVNKIHIGSILRFFSLLSI 285 (551)
T ss_dssp HHHHHHHHHHHHHHH--------------HHHHHT-------------------------TCBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--------------Hhhhhc-------------------------CCcccchHHHHHHHHHHHhc
Confidence 222222222211100 000000 00001112333333322212
Q ss_pred ccCCeEEEEecCCCCCCCCCCCeEEEEccCcccccHHHhhcc-CEEEEecCCCCCCcchhhhhCCC-Ccc----ccccee
Q 004358 410 YTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRF-QSVVITSGTLSPIDLYPRLLNFH-PVV----SRSFKM 483 (759)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~s~~~~~l~~~~-~svIltSgTL~p~~~f~~~lg~~-~~~----~~~~~~ 483 (759)
+++++ .+. .+ .++++|++|+..|+ +++++ +++|||||||+|+++|.+.||++ +.. ...+++
T Consensus 286 -~~~~v--~~~--------~~-~l~~~pl~~~~~l~-~~~~~~~svIltSaTL~~~~~~~~~lGl~~~~~~~~~~~~~~s 352 (551)
T 3crv_A 286 -GSFIP--FSY--------SK-RLVIKNPEISYYLN-LLNDNELSIILMSGTLPPREYMEKVWGIKRNMLYLDVEREIQK 352 (551)
T ss_dssp -SSCEE--EEE--------TT-EEEEECCCTHHHHG-GGGCTTCEEEEEESSCCCHHHHHHTSCCCSCEEEEEHHHHTTS
T ss_pred -cCCeE--ecc--------CC-EEEEEECCHHHHHH-HHhccCceEEEEeeCCCcHHHHHHHhCCCCccccccceeecCC
Confidence 33442 221 13 89999999999999 99998 99999999999999999999998 332 345666
Q ss_pred eccCCceeeEEeecCCCCCcceeccccCCChHHHHHHHHHHHHhhcccCCcEEEEecCHHHHHHHHHHHhhcccHHHHhc
Q 004358 484 SLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQ 563 (759)
Q Consensus 484 ~~~~~~~~~~ii~~g~~~~~l~s~f~~r~~~~~~~~~~~~l~~~~~~~~gg~lv~f~Sy~~l~~~~~~~~~~~~~~~l~~ 563 (759)
++ +++.. +++++ .++++|+.|+ +++.+.+++.|.+++..+|||+|||||||++|+++++. .
T Consensus 353 pf-~~~~~-l~v~~-----~~~~~~~~r~-~~~~~~l~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~-----------~ 413 (551)
T 3crv_A 353 RV-SGSYE-CYIGV-----DVTSKYDMRS-DNMWKRYADYLLKIYFQAKANVLVVFPSYEIMDRVMSR-----------I 413 (551)
T ss_dssp CC-SCEEE-EEEEC-----SCCCCTTTCC-HHHHHHHHHHHHHHHHHCSSEEEEEESCHHHHHHHHTT-----------C
T ss_pred cC-CCceE-EEEeC-----CCCCccccCC-HHHHHHHHHHHHHHHHhCCCCEEEEecCHHHHHHHHHh-----------c
Confidence 66 55554 44443 4667787776 56789999999999999999999999999999999862 1
Q ss_pred CceEEEeCCCchhHHHHHHHHHHhccCCCCeEEEEeecCccccccccC---CCCceEEEEEccCCCCcCCHHHHHHHHHH
Q 004358 564 HKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFD---RHYGRLVIMFGVPFQYTLSKILLARLEYL 640 (759)
Q Consensus 564 ~k~if~E~~~~~~~~~~l~~f~~~~~~~~~aiL~gv~~G~~~EGiDf~---~~~~r~vii~glPfp~~~dp~v~ar~~~l 640 (759)
.++||+|+++. +...+++.|++ ..++|||||+||+|||||||+ |+.||+|||+|||||+| ||.+++|++|+
T Consensus 414 ~~~v~~q~~~~-~~~~~~~~~~~----~~~~vl~~v~gg~~~EGiD~~d~~g~~l~~viI~~lPfp~~-dp~~~ar~~~~ 487 (551)
T 3crv_A 414 SLPKYVESEDS-SVEDLYSAISA----NNKVLIGSVGKGKLAEGIELRNNDRSLISDVVIVGIPYPPP-DDYLKILAQRV 487 (551)
T ss_dssp CSSEEECCSSC-CHHHHHHHTTS----SSSCEEEEESSCCSCCSSCCEETTEESEEEEEEESCCCCCC-SHHHHHHHHHT
T ss_pred CCcEEEcCCCC-CHHHHHHHHHh----cCCeEEEEEecceecccccccccCCcceeEEEEEcCCCCCC-CHHHHHHHHHH
Confidence 36799999874 34667888873 346999999999999999999 99999999999999999 99999999999
Q ss_pred HHhcCCCcc-hhhHHHHHHHHHHhcccccccCCCeeEEEEeecccCCccccCCCchHHHhhccc
Q 004358 641 RDTFQIKEG-DFLTFDALRQAAQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRD 703 (759)
Q Consensus 641 ~~~~~~~~~-~~~~~~a~~~~~QaiGR~IR~~~D~g~iillD~R~~~~~~~~~lp~w~~~~~~~ 703 (759)
+++.+..++ .+|..+|+++++||+||+|||++|||+|+|+|+||.+ +|+++.++.
T Consensus 488 ~~~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~R~~~--------~~~~~~~~~ 543 (551)
T 3crv_A 488 SLKMNRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWLLDKRFES--------LYWKKNLKC 543 (551)
T ss_dssp TCCSSTTTHHHHTHHHHHHHHHHHHHTTCCSTTCEEEEEEESGGGGS--------HHHHHHTTC
T ss_pred HHhhCCchhHHHHHHHHHHHHHHHhccCccCCCccEEEEEeehhccc--------chhhhhcee
Confidence 966543222 2255569999999999999999999999999999976 667766664
No 3
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=100.00 E-value=3.4e-71 Score=635.00 Aligned_cols=517 Identities=18% Similarity=0.240 Sum_probs=315.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccchhhHHHHHHHHHhhh
Q 004358 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLH 91 (759)
Q Consensus 12 FPy~~~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~l~ 91 (759)
.+|+ +||+|.+||.+|.+++.+++++++|||||||||++||+|++.+ +. +|+|+|+|++|++|++++++++
T Consensus 4 ~~~~-~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~------~~-~~~~~~~t~~l~~q~~~~~~~l- 74 (540)
T 2vl7_A 4 LKLQ-LRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL------KK-KVLIFTRTHSQLDSIYKNAKLL- 74 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH------TC-EEEEEESCHHHHHHHHHHHGGG-
T ss_pred CCCC-CCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC------CC-cEEEEcCCHHHHHHHHHHHHhc-
Confidence 4575 5999999999999999999999999999999999999998864 35 9999999999999999999874
Q ss_pred hhcccCCCCccceEEEeecCCcccccchHHhhhcccccHHHHHHHhhhHHHHHhhhcCCCCCCCcCccchHHhhhcCCCC
Q 004358 92 NYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLP 171 (759)
Q Consensus 92 ~~~~~~~g~~~~~~~~~l~gr~~lC~~~~~~~~~~~~~~~~~c~~l~~~w~~~t~~~~~~~~~c~~~~~~~~~~~~~~~~ 171 (759)
+++++.++||+++|+++....... +..| ..|+++++.....+ .
T Consensus 75 -----------~~~~~~l~gr~~lC~~~~~~~~~~----~~~c------------------~~c~~~~~~~~~gd--~-- 117 (540)
T 2vl7_A 75 -----------GLKTGFLIGKSASCIYAQGDEEPD----EINC------------------SKCRLKDKIKTIED--K-- 117 (540)
T ss_dssp -----------TCCEEEC--------------------------------------------------------------
T ss_pred -----------CCcEEEecCCccccCCchhccccc----ccCC------------------CCCCchhccccccc--C--
Confidence 256788999999999976542211 1123 23555543322111 0
Q ss_pred CCCCCHHHHHHhcccCCCcchHHHHhhcccCeEEEecCccccCHHHHhHhh-----hccCCCcEEEEcCCCChhHHhhhh
Q 004358 172 PGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIIS-----KEMQKESVVVFDEAHNIDNVCIEA 246 (759)
Q Consensus 172 ~~~~~~e~~~~~~~~~~~Cpy~~ar~~~~~adiiv~n~~~ll~~~~~~~~~-----~~l~~~~ivI~DEAHnl~~~~~~~ 246 (759)
++.+.+...+..++.|||+.+|+.+..|||||+||+||+++..++.+. ..+++.++||||||||+++ ++++
T Consensus 118 ---~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiVV~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~~-a~~~ 193 (540)
T 2vl7_A 118 ---EPSKLIEEFKDAVDYCPYYSLRANLKDKDVIAMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLLE-ADKW 193 (540)
T ss_dssp ------------------------CTTGGGCSEEEEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGGG-GGGG
T ss_pred ---CcHHHHHHHhhhcCCChHHHHHHHhhcCCEEEEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHHH-HHHH
Confidence 111222334667899999999999999999999999999998776543 1356889999999999966 8999
Q ss_pred cceeecHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHhcCCCccchhcccCCCCChhhhhhccCcchhch
Q 004358 247 LSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRA 326 (759)
Q Consensus 247 ~s~~is~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 326 (759)
+|.+|+..++..+.+++..... ....+...+.+.+..+.+.+..... ...+..... .+...
T Consensus 194 ~s~~ls~~~l~~~~~~l~~~~~----~~~~~~~~l~~~~~~l~~~l~~~~~---~~~~~~~~~---------~~~~~--- 254 (540)
T 2vl7_A 194 FTRKISRKMLERALKEIEIVER----LNRIDAKKVKDYINLLIDYMSKLIK---DGRCHELSL---------MPLPD--- 254 (540)
T ss_dssp GCEEECHHHHHHHHHHHHHHHH----TTCCCCHHHHHHHHHHHHHHHTSCC---SSSEEEESC---------CCCCC---
T ss_pred hccccCHHHHHHHHHHHHHHHh----cchhhHHHHHHHHHHHHHHHHHhhc---cccccchhh---------ccccc---
Confidence 9999999999999887765321 1112233344444444444432110 000000000 01000
Q ss_pred HHHHHHHHHHHHHHHhhhhcccccccChhHHHHHHHHhhccccchhhhhHHHHHHHHHHhhccCCCccchhHHHHhHHHH
Q 004358 327 EHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATL 406 (759)
Q Consensus 327 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~rl~~l~~~l~~~~~~~~~~l~~i~~f~~~ 406 (759)
.+.++.+..+.+.+.+. ..... ....+..+.+|.
T Consensus 255 ~~~l~~l~~~~~~~~~~------------------------~~~~~--------------------~~~~l~~~l~~~-- 288 (540)
T 2vl7_A 255 RETNGELIVVTRAYLNI------------------------DEGPV--------------------KKSSLKSLLKFV-- 288 (540)
T ss_dssp HHHHHHHHHHHHHHHTT------------------------CCSSS--------------------CCCHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHh------------------------hccCc--------------------cHHHHHHHHHHH--
Confidence 01111111111111000 00000 001112222222
Q ss_pred hccccCCeEEEEecCCCCCCCCCCCeEEEEccCcccccHHHhhccCEEEEecCCCCCC----cchhhhhCCCCcccccce
Q 004358 407 VGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPI----DLYPRLLNFHPVVSRSFK 482 (759)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~s~~~~~l~~~~~svIltSgTL~p~----~~f~~~lg~~~~~~~~~~ 482 (759)
.. ++.+.|.. ..+.+.|.++...+.+.+....++|||||||+|. +.|. ..+.
T Consensus 289 -~~--~~~~~~~~-----------~~l~~~P~~~~~~l~~~~~~~~~~IltSATL~p~~~~~~~f~----------~~~~ 344 (540)
T 2vl7_A 289 -EM--KGDLYNCN-----------GSLVKVPSDVNQLIEDALNVKTFKVLMSGTLPESLTLTNSYK----------IVVN 344 (540)
T ss_dssp -HS--CCEEEEET-----------TEEEEECSCHHHHHHHHTCCSSCEEEEESSCCTTCCCTTEEE----------EECC
T ss_pred -Hh--CCCEEEEC-----------CeEEEehHHHHHHHHHhcCccCCeEEEcccCCCCcccchhcC----------Cchh
Confidence 11 33455531 1466666665555544444455679999999993 2220 0001
Q ss_pred eeccCCceeeEEeecCCCCCcceeccccCCChHHHHHHHHHHHHhhcccCCcEEEEecCHHHHHHHHHHHhhcccHHHHh
Q 004358 483 MSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIM 562 (759)
Q Consensus 483 ~~~~~~~~~~~ii~~g~~~~~l~s~f~~r~~~~~~~~~~~~l~~~~~~~~gg~lv~f~Sy~~l~~~~~~~~~~~~~~~l~ 562 (759)
..+. ....++ ...++|+|++|+++ + +.+++.|.+++...|||+|||||||++|+.+++.|..
T Consensus 345 ~~~g---~~~~~~-----~~~l~s~f~~r~~~-~-~~~~~~l~~~~~~~~g~~lvff~S~~~~~~v~~~l~~-------- 406 (540)
T 2vl7_A 345 ESYG---RGEYYY-----CPNVTSELRKRNSN-I-PIYSILLKRIYENSSKSVLVFFPSYEMLESVRIHLSG-------- 406 (540)
T ss_dssp CC-C---CCEEEE-----CTTCCCCGGGHHHH-H-HHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHTTCTT--------
T ss_pred heec---CCccee-----ccccCCCcccccCH-H-HHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHhcc--------
Confidence 1111 111112 23678999998764 5 8999999999999999999999999999999988753
Q ss_pred cCceEEEeCCCchhHHHHHHHHHHhccCCCCeEEEEeecCccccccccCCC--CceEEEEEccCCCCcCCHHHHHHHHHH
Q 004358 563 QHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRH--YGRLVIMFGVPFQYTLSKILLARLEYL 640 (759)
Q Consensus 563 ~~k~if~E~~~~~~~~~~l~~f~~~~~~~~~aiL~gv~~G~~~EGiDf~~~--~~r~vii~glPfp~~~dp~v~ar~~~l 640 (759)
+++++|+.+ .+...++++|++ .++|||||++|+|||||||+|+ .+|+|||+|||||+|.||.+++|++|+
T Consensus 407 --~~~~~q~~~-~~~~~~l~~f~~-----~~~il~~V~~~~~~EGiD~~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~ 478 (540)
T 2vl7_A 407 --IPVIEENKK-TRHEEVLELMKT-----GKYLVMLVMRAKESEGVEFREKENLFESLVLAGLPYPNVSDDMVRKRIERL 478 (540)
T ss_dssp --SCEEESTTT-CCHHHHHHHHHT-----SCCEEEEEC---------------CEEEEEEESCCCCCTTSHHHHHHHHHH
T ss_pred --CceEecCCC-CcHHHHHHHHhc-----CCeEEEEEecCceecceecCCCcccccEEEEECCCCCCCCCHHHHHHHHHH
Confidence 468999876 467889999986 3589999999999999999998 899999999999999999999999999
Q ss_pred HHhcCCCcchhhHHHHHHHHHHhcccccccCCCeeEEEEeecccCCccccCCC
Q 004358 641 RDTFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMIFADKRYSRHDKRSKL 693 (759)
Q Consensus 641 ~~~~~~~~~~~~~~~a~~~~~QaiGR~IR~~~D~g~iillD~R~~~~~~~~~l 693 (759)
+++++.++.+|..+.++++++||+||+|||++|||+|+|+|+||.+..|+..|
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~llD~R~~~~~yg~~l 531 (540)
T 2vl7_A 479 SKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLCDSRYREYFADLGI 531 (540)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEEESGGGGGGTTTTTC
T ss_pred HHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEEEccccCcchhhccc
Confidence 99988888778778889999999999999999999999999999998888666
No 4
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.80 E-value=1.4e-17 Score=182.79 Aligned_cols=76 Identities=11% Similarity=0.037 Sum_probs=63.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccchhhHHHHHHHHHhhh
Q 004358 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLH 91 (759)
Q Consensus 12 FPy~~~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~l~ 91 (759)
++|..|||.|.+.+..+. +++++++.||||+|||++|++|++........+. +++|.+||.++..|+.++++++.
T Consensus 26 ~g~~~~~~~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~-~~lil~P~~~L~~q~~~~~~~~~ 100 (391)
T 1xti_A 26 CGFEHPSEVQHECIPQAI----LGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQV-SVLVMCHTRELAFQISKEYERFS 100 (391)
T ss_dssp HSCCSCCHHHHHHHHHHT----TTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCC-CEEEECSCHHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHh----cCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCe-eEEEECCCHHHHHHHHHHHHHHH
Confidence 577778999999886655 5789999999999999999999987654433345 89999999999999999998874
Q ss_pred h
Q 004358 92 N 92 (759)
Q Consensus 92 ~ 92 (759)
.
T Consensus 101 ~ 101 (391)
T 1xti_A 101 K 101 (391)
T ss_dssp T
T ss_pred h
Confidence 3
No 5
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.78 E-value=3.5e-17 Score=179.63 Aligned_cols=76 Identities=17% Similarity=0.169 Sum_probs=62.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccchhhHHHHHHHHHhh
Q 004358 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (759)
Q Consensus 12 FPy~~~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~l 90 (759)
+.|..|||.|.+.+..+... .++++++.||||+|||++|+.|++........+. +++|.+||.++..|+.++++.+
T Consensus 23 ~~~~~~~~~Q~~~i~~~~~~--~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~-~~lil~P~~~L~~q~~~~~~~~ 98 (395)
T 3pey_A 23 MKFQKPSKIQERALPLLLHN--PPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASP-QAICLAPSRELARQTLEVVQEM 98 (395)
T ss_dssp TTCCSCCHHHHHHHHHHHCS--SCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSC-CEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHcC--CCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCc-cEEEECCCHHHHHHHHHHHHHH
Confidence 56777899999998766532 2389999999999999999999887765433455 8999999999999999988875
No 6
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.77 E-value=4.4e-17 Score=179.58 Aligned_cols=75 Identities=19% Similarity=0.090 Sum_probs=63.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccchhhHHHHHHHHHhhh
Q 004358 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLH 91 (759)
Q Consensus 12 FPy~~~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~l~ 91 (759)
+.|..|||.|.+.+..+. +++++++.||||+|||++|+.|++........+. +++|.+||.++..|+.++++.+.
T Consensus 39 ~g~~~~~~~Q~~~i~~i~----~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~-~~lil~P~~~L~~q~~~~~~~~~ 113 (400)
T 1s2m_A 39 AGFEKPSPIQEEAIPVAI----TGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKI-QALIMVPTRELALQTSQVVRTLG 113 (400)
T ss_dssp TTCCSCCHHHHHHHHHHH----HTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSC-CEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHh----cCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCc-cEEEEcCCHHHHHHHHHHHHHHh
Confidence 467778999999997665 5788999999999999999999987765433345 89999999999999999988763
No 7
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.76 E-value=1.4e-16 Score=184.43 Aligned_cols=78 Identities=22% Similarity=0.230 Sum_probs=64.9
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCC----CCCcEEEEEccchhhHHHHHHH
Q 004358 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKP----ENPVKLIYCTRTVHEMEKTLAE 86 (759)
Q Consensus 11 ~FPy~~~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~----~~~~kvi~~T~T~~l~~Q~~~e 86 (759)
.++|..|||.|.+.+..+... +++.+++.||||+|||++|++|++....... .+. +++|.+||.++..|+.++
T Consensus 38 ~~g~~~~~~~Q~~~i~~il~~--~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~-~~lvl~Ptr~La~Q~~~~ 114 (579)
T 3sqw_A 38 RMEFPGLTPVQQKTIKPILSS--EDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMV-KAVIVAPTRDLALQIEAE 114 (579)
T ss_dssp TTTCSSCCHHHHHHHHHHHCS--SSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSC-CEEEECSSHHHHHHHHHH
T ss_pred HCCCCCCCHHHHHHHHHHHcc--CCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCC-eEEEEcchHHHHHHHHHH
Confidence 578988899999988766521 4678999999999999999999998776542 124 899999999999999999
Q ss_pred HHhhh
Q 004358 87 LKLLH 91 (759)
Q Consensus 87 l~~l~ 91 (759)
++++.
T Consensus 115 ~~~~~ 119 (579)
T 3sqw_A 115 VKKIH 119 (579)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88864
No 8
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.76 E-value=1.1e-16 Score=178.48 Aligned_cols=75 Identities=23% Similarity=0.246 Sum_probs=64.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCC-----CCCcEEEEEccchhhHHHHHHH
Q 004358 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKP-----ENPVKLIYCTRTVHEMEKTLAE 86 (759)
Q Consensus 12 FPy~~~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~-----~~~~kvi~~T~T~~l~~Q~~~e 86 (759)
+.|..|+|.|.+.+..+. +++++++.||||+|||++|++|++......+ .+. +++|.+||.++..|+.++
T Consensus 74 ~g~~~pt~iQ~~ai~~i~----~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~-~~lil~PtreLa~Q~~~~ 148 (434)
T 2db3_A 74 SGYKIPTPIQKCSIPVIS----SGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRP-QVVIVSPTRELAIQIFNE 148 (434)
T ss_dssp TTCCSCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCC-SEEEECSSHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHh----cCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCc-cEEEEecCHHHHHHHHHH
Confidence 578888999999887654 7899999999999999999999998776532 134 899999999999999999
Q ss_pred HHhhh
Q 004358 87 LKLLH 91 (759)
Q Consensus 87 l~~l~ 91 (759)
++++.
T Consensus 149 ~~~~~ 153 (434)
T 2db3_A 149 ARKFA 153 (434)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 98863
No 9
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.76 E-value=1.1e-16 Score=173.90 Aligned_cols=114 Identities=14% Similarity=0.175 Sum_probs=82.7
Q ss_pred HHHhhcccCCcEEEEecCHHHHHHHHHHHhhcccHHHHhcCceEEEeCC-CchhHHHHHHHHHHhccCCCCeEEEEeecC
Q 004358 524 LVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQ-DVVETTLALDNYRKACDCGRGAVFFSVARG 602 (759)
Q Consensus 524 l~~~~~~~~gg~lv~f~Sy~~l~~~~~~~~~~~~~~~l~~~k~if~E~~-~~~~~~~~l~~f~~~~~~~~~aiL~gv~~G 602 (759)
+.+++...++.+|||++|.+..+.+++.+++.+. +...+-+. ...++...++.|+. ++..||+++ .
T Consensus 230 l~~~l~~~~~~~lvf~~~~~~~~~l~~~L~~~~~-------~~~~~~~~~~~~~r~~~~~~f~~----~~~~vlv~T--~ 296 (367)
T 1hv8_A 230 LCRLLKNKEFYGLVFCKTKRDTKELASMLRDIGF-------KAGAIHGDLSQSQREKVIRLFKQ----KKIRILIAT--D 296 (367)
T ss_dssp HHHHHCSTTCCEEEECSSHHHHHHHHHHHHHTTC-------CEEEECSSSCHHHHHHHHHHHHT----TSSSEEEEC--T
T ss_pred HHHHHhcCCCcEEEEECCHHHHHHHHHHHHhcCC-------CeEEeeCCCCHHHHHHHHHHHHc----CCCeEEEEC--C
Confidence 4455556778999999999999999999876532 33334332 22456677888876 567799987 4
Q ss_pred ccccccccCCCCceEEEEEccCCCCcCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhcccccccCCCeeEEEEeec
Q 004358 603 KVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMIFADK 682 (759)
Q Consensus 603 ~~~EGiDf~~~~~r~vii~glPfp~~~dp~v~ar~~~l~~~~~~~~~~~~~~~a~~~~~QaiGR~IR~~~D~g~iillD~ 682 (759)
.+++|+|+|+ ++.||..+.|.. .....|++||+-|...+--+++++++
T Consensus 297 ~~~~Gid~~~--~~~Vi~~~~~~s------------------------------~~~~~Q~~GR~~R~g~~g~~~~~~~~ 344 (367)
T 1hv8_A 297 VMSRGIDVND--LNCVINYHLPQN------------------------------PESYMHRIGRTGRAGKKGKAISIINR 344 (367)
T ss_dssp THHHHCCCSC--CSEEEESSCCSC------------------------------HHHHHHHSTTTCCSSSCCEEEEEECT
T ss_pred hhhcCCCccc--CCEEEEecCCCC------------------------------HHHhhhcccccccCCCccEEEEEEcH
Confidence 8999999997 788998887642 12346999999998765556666654
No 10
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.74 E-value=2.2e-16 Score=174.82 Aligned_cols=106 Identities=19% Similarity=0.240 Sum_probs=75.6
Q ss_pred CCcEEEEecCHHHHHHHHHHHhhcccHHHHhcCceEEEeCCC-chhHHHHHHHHHHhccCCCCeEEEEeecCcccccccc
Q 004358 532 PDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQD-VVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDF 610 (759)
Q Consensus 532 ~gg~lv~f~Sy~~l~~~~~~~~~~~~~~~l~~~k~if~E~~~-~~~~~~~l~~f~~~~~~~~~aiL~gv~~G~~~EGiDf 610 (759)
++.+|||++|.+..+.+++.+.+.++ +...+-+.- ..++...++.|++ ++..||+++. .+++|||+
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~~~-------~~~~~h~~~~~~~r~~~~~~f~~----g~~~vlvaT~--~~~~Gidi 342 (417)
T 2i4i_A 276 DSLTLVFVETKKGADSLEDFLYHEGY-------ACTSIHGDRSQRDREEALHQFRS----GKSPILVATA--VAARGLDI 342 (417)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHTTC-------CEEEECTTSCHHHHHHHHHHHHH----TSSCEEEECH--HHHTTSCC
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCC-------CeeEecCCCCHHHHHHHHHHHHc----CCCCEEEECC--hhhcCCCc
Confidence 56799999999999999999876532 333343332 2456778889986 5677999884 89999999
Q ss_pred CCCCceEEEEEccCCCCcCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhcccccccCCCeeEEEEeec
Q 004358 611 DRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMIFADK 682 (759)
Q Consensus 611 ~~~~~r~vii~glPfp~~~dp~v~ar~~~l~~~~~~~~~~~~~~~a~~~~~QaiGR~IR~~~D~g~iillD~ 682 (759)
|+ ++.||..++|.. .....|.+||+-|....=-+++++++
T Consensus 343 p~--v~~Vi~~~~p~s------------------------------~~~~~Qr~GR~gR~g~~g~~~~~~~~ 382 (417)
T 2i4i_A 343 SN--VKHVINFDLPSD------------------------------IEEYVHRIGRTGRVGNLGLATSFFNE 382 (417)
T ss_dssp CC--EEEEEESSCCSS------------------------------HHHHHHHHTTBCC--CCEEEEEEECG
T ss_pred cc--CCEEEEEcCCCC------------------------------HHHHHHhcCccccCCCCceEEEEEcc
Confidence 97 788998887642 12335999999998665334555554
No 11
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.74 E-value=5.5e-16 Score=178.91 Aligned_cols=79 Identities=22% Similarity=0.234 Sum_probs=64.9
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCC----CCCcEEEEEccchhhHHHHHHH
Q 004358 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKP----ENPVKLIYCTRTVHEMEKTLAE 86 (759)
Q Consensus 11 ~FPy~~~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~----~~~~kvi~~T~T~~l~~Q~~~e 86 (759)
.++|..+||.|.+.+..+.. .+++.+++.||||+|||++|++|++......+ .+. +++|.+||.++..|+.++
T Consensus 89 ~~g~~~~~~~Q~~~i~~~l~--~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~-~~lil~Ptr~La~Q~~~~ 165 (563)
T 3i5x_A 89 RMEFPGLTPVQQKTIKPILS--SEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMV-KAVIVAPTRDLALQIEAE 165 (563)
T ss_dssp TTCCSSCCHHHHHHHHHHHS--SSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSC-CEEEECSSHHHHHHHHHH
T ss_pred HCCCCCCCHHHHHHHHHHhc--CCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCe-eEEEEcCcHHHHHHHHHH
Confidence 36888889999998876651 14579999999999999999999998876542 123 899999999999999999
Q ss_pred HHhhhh
Q 004358 87 LKLLHN 92 (759)
Q Consensus 87 l~~l~~ 92 (759)
++++..
T Consensus 166 ~~~~~~ 171 (563)
T 3i5x_A 166 VKKIHD 171 (563)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 988643
No 12
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.73 E-value=4.5e-16 Score=172.11 Aligned_cols=75 Identities=12% Similarity=0.096 Sum_probs=63.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccchhhHHHHHHHHHhhh
Q 004358 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLH 91 (759)
Q Consensus 12 FPy~~~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~l~ 91 (759)
++|..|||.|.+.+..+. +++++++.||||+|||++|++|++........+. +++|.+||.++..|+.++++++.
T Consensus 55 ~g~~~~~~~Q~~ai~~i~----~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~-~~lil~Pt~~L~~q~~~~~~~~~ 129 (410)
T 2j0s_A 55 YGFEKPSAIQQRAIKQII----KGRDVIAQSQSGTGKTATFSISVLQCLDIQVRET-QALILAPTRELAVQIQKGLLALG 129 (410)
T ss_dssp HTCCSCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSC-CEEEECSSHHHHHHHHHHHHHHT
T ss_pred cCCCCCCHHHHHHHHHHh----CCCCEEEECCCCCCchHHHHHHHHHHHhhccCCc-eEEEEcCcHHHHHHHHHHHHHHh
Confidence 678878999999987665 6789999999999999999999887654333345 89999999999999999998863
No 13
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.71 E-value=6.1e-16 Score=170.87 Aligned_cols=78 Identities=15% Similarity=0.113 Sum_probs=64.0
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccchhhHHHHHHHHHhh
Q 004358 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (759)
Q Consensus 11 ~FPy~~~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~l 90 (759)
.+.|..|||.|.+.+..+.+. .++++++.||||+|||++|++|++........+. +++|.+||.++..|+.+.++++
T Consensus 42 ~~g~~~~~~~Q~~~i~~~~~~--~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~-~~lil~P~~~L~~q~~~~~~~~ 118 (412)
T 3fht_A 42 AMGFNRPSKIQENALPLMLAE--PPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYP-QCLCLSPTYELALQTGKVIEQM 118 (412)
T ss_dssp HTTCCSCCHHHHHHHHHHHSS--SCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSC-CEEEECSSHHHHHHHHHHHHHH
T ss_pred HcCCCCCCHHHHHHHHHHhcC--CCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCC-CEEEECCCHHHHHHHHHHHHHH
Confidence 367887899999998766632 2489999999999999999999887765444445 8999999999999998888876
Q ss_pred h
Q 004358 91 H 91 (759)
Q Consensus 91 ~ 91 (759)
.
T Consensus 119 ~ 119 (412)
T 3fht_A 119 G 119 (412)
T ss_dssp T
T ss_pred H
Confidence 3
No 14
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.69 E-value=1.7e-15 Score=162.48 Aligned_cols=70 Identities=17% Similarity=0.141 Sum_probs=60.8
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccchhhHHHHHHHHHhh
Q 004358 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (759)
Q Consensus 11 ~FPy~~~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~l 90 (759)
.++|.++||.|.+.+..+. +++++++.||||+|||++|+.|++.. +. +++|.+||.++..|+.++++++
T Consensus 11 ~~g~~~l~~~Q~~~i~~i~----~~~~~lv~~~TGsGKT~~~~~~~~~~------~~-~~liv~P~~~L~~q~~~~~~~~ 79 (337)
T 2z0m_A 11 EMGFKNFTEVQSKTIPLML----QGKNVVVRAKTGSGKTAAYAIPILEL------GM-KSLVVTPTRELTRQVASHIRDI 79 (337)
T ss_dssp HTTCCSCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHHH------TC-CEEEECSSHHHHHHHHHHHHHH
T ss_pred HcCCCCCCHHHHHHHHHHh----cCCCEEEEcCCCCcHHHHHHHHHHhh------cC-CEEEEeCCHHHHHHHHHHHHHH
Confidence 4788888999999986655 67899999999999999999997752 35 8999999999999999999876
Q ss_pred h
Q 004358 91 H 91 (759)
Q Consensus 91 ~ 91 (759)
.
T Consensus 80 ~ 80 (337)
T 2z0m_A 80 G 80 (337)
T ss_dssp T
T ss_pred h
Confidence 3
No 15
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.69 E-value=4.6e-15 Score=170.86 Aligned_cols=69 Identities=25% Similarity=0.260 Sum_probs=60.9
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccchhhHHHHHHHHHhh
Q 004358 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (759)
Q Consensus 11 ~FPy~~~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~l 90 (759)
.|+|..+||.|.+.+..+. +++.+++.||||+|||++|++|++. .++ +++|.+||.++..|.++.++.+
T Consensus 39 ~fg~~~~rp~Q~~~i~~il----~g~d~lv~~pTGsGKTl~~~lpal~------~~g-~~lVisP~~~L~~q~~~~l~~~ 107 (591)
T 2v1x_A 39 VFKLEKFRPLQLETINVTM----AGKEVFLVMPTGGGKSLCYQLPALC------SDG-FTLVICPLISLMEDQLMVLKQL 107 (591)
T ss_dssp TSCCCSCCTTHHHHHHHHH----TTCCEEEECCTTSCTTHHHHHHHHT------SSS-EEEEECSCHHHHHHHHHHHHHH
T ss_pred HhCCCCCCHHHHHHHHHHH----cCCCEEEEECCCChHHHHHHHHHHH------cCC-cEEEEeCHHHHHHHHHHHHHhc
Confidence 5899999999999987765 5889999999999999999999874 135 8999999999999999988874
No 16
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.69 E-value=1.7e-15 Score=167.51 Aligned_cols=76 Identities=13% Similarity=0.079 Sum_probs=64.5
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccchhhHHHHHHHHHhh
Q 004358 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (759)
Q Consensus 11 ~FPy~~~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~l 90 (759)
.++|.+|||.|.+.+..+. +++++++.||||+|||++|++|++........+. +++|.++|.++..|+.++++.+
T Consensus 57 ~~~~~~~~~~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~-~~lil~P~~~L~~q~~~~~~~~ 131 (414)
T 3eiq_A 57 AYGFEKPSAIQQRAILPCI----KGYDVIAQAQSGTGKTATFAISILQQIELDLKAT-QALVLAPTRELAQQIQKVVMAL 131 (414)
T ss_dssp HTTCCSCCHHHHHHHHHHH----TTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSC-CEEEECSSHHHHHHHHHHHHHH
T ss_pred HcCCCCCCHHHHHHhHHHh----CCCCEEEECCCCCcccHHHHHHHHHHHhhcCCce-eEEEEeChHHHHHHHHHHHHHH
Confidence 3788888999999986655 5788999999999999999999987765443455 8999999999999999998876
Q ss_pred h
Q 004358 91 H 91 (759)
Q Consensus 91 ~ 91 (759)
.
T Consensus 132 ~ 132 (414)
T 3eiq_A 132 G 132 (414)
T ss_dssp G
T ss_pred h
Confidence 3
No 17
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.68 E-value=1e-16 Score=176.05 Aligned_cols=75 Identities=13% Similarity=0.116 Sum_probs=63.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccchhhHHHHHHHHHhhh
Q 004358 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLH 91 (759)
Q Consensus 12 FPy~~~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~l~ 91 (759)
++|..|||.|.+.+..+. +++++++.||||+|||++|++|++........++ +++|.+||.++..|+.++++++.
T Consensus 39 ~g~~~~~~~Q~~~i~~i~----~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~-~~lil~P~~~L~~q~~~~~~~~~ 113 (394)
T 1fuu_A 39 YGFEEPSAIQQRAIMPII----EGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAP-QALMLAPTRELALQIQKVVMALA 113 (394)
T ss_dssp HTCCSCCHHHHHHHHHHH----HTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSC-CEEEECSSHHHHHHHHHHHHHHT
T ss_pred cCCCCCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHhhccCCCC-CEEEEcCCHHHHHHHHHHHHHHh
Confidence 577778999999887665 5789999999999999999999988765444455 89999999999999999988763
No 18
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.67 E-value=5.8e-15 Score=168.12 Aligned_cols=70 Identities=21% Similarity=0.310 Sum_probs=60.9
Q ss_pred eeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccchhhHHHHHHHHHh
Q 004358 10 VYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKL 89 (759)
Q Consensus 10 v~FPy~~~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~ 89 (759)
-.|+|..+||.|.+.+..+. +++.+++.||||+|||++|++|++.. .+ +++|.+||.++..|.+++++.
T Consensus 19 ~~~g~~~~r~~Q~~~i~~il----~g~d~lv~apTGsGKTl~~~lp~l~~------~g-~~lvi~P~~aL~~q~~~~l~~ 87 (523)
T 1oyw_A 19 ETFGYQQFRPGQEEIIDTVL----SGRDCLVVMPTGGGKSLCYQIPALLL------NG-LTVVVSPLISLMKDQVDQLQA 87 (523)
T ss_dssp HTTCCSSCCTTHHHHHHHHH----TTCCEEEECSCHHHHHHHHHHHHHHS------SS-EEEEECSCHHHHHHHHHHHHH
T ss_pred HHhCCCCCCHHHHHHHHHHH----cCCCEEEECCCCcHHHHHHHHHHHHh------CC-CEEEECChHHHHHHHHHHHHH
Confidence 35999989999999987665 67899999999999999999998742 35 899999999999999998876
Q ss_pred h
Q 004358 90 L 90 (759)
Q Consensus 90 l 90 (759)
+
T Consensus 88 ~ 88 (523)
T 1oyw_A 88 N 88 (523)
T ss_dssp T
T ss_pred c
Confidence 3
No 19
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.67 E-value=5.3e-15 Score=163.85 Aligned_cols=71 Identities=23% Similarity=0.132 Sum_probs=61.2
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccchhhHHHHHHHHHhh
Q 004358 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (759)
Q Consensus 11 ~FPy~~~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~l 90 (759)
.|||++ +|.|.+.+..+. +++++++.||||+|||++|+.|++.... .++ +++|.+||.++..|+.++++.+
T Consensus 17 ~~~~~~-~~~Q~~~i~~i~----~~~~~lv~apTGsGKT~~~l~~~~~~~~---~~~-~~lil~Pt~~L~~q~~~~~~~~ 87 (414)
T 3oiy_A 17 KFGKDL-TGYQRLWAKRIV----QGKSFTMVAPTGVGKTTFGMMTALWLAR---KGK-KSALVFPTVTLVKQTLERLQKL 87 (414)
T ss_dssp HHSSCC-CHHHHHHHHHHT----TTCCEECCSCSSSSHHHHHHHHHHHHHT---TTC-CEEEEESSHHHHHHHHHHHHHH
T ss_pred hcCCCC-CHHHHHHHHHHh----cCCCEEEEeCCCCCHHHHHHHHHHHHhc---CCC-EEEEEECCHHHHHHHHHHHHHH
Confidence 478875 999999887665 6789999999999999999999877652 245 8999999999999999999886
No 20
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.64 E-value=4.3e-16 Score=177.22 Aligned_cols=76 Identities=16% Similarity=0.108 Sum_probs=60.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccchhhHHHHHHHHHhh
Q 004358 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (759)
Q Consensus 12 FPy~~~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~l 90 (759)
.+|..|||.|.+.+..+.+. .++++++.||||+|||++|+.|++........+. +++|.++|.++..|+.++++.+
T Consensus 137 ~g~~~p~~~Q~~ai~~i~~~--~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~-~vLvl~P~~~L~~Q~~~~~~~~ 212 (508)
T 3fho_A 137 XXXXXXXKIQEKALPLLLSN--PPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKP-QAICLAPSRELARQIMDVVTEM 212 (508)
T ss_dssp --CEECCCTTSSSHHHHHCS--SCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSC-CEEEECSCHHHHHHHHHHHHHH
T ss_pred ccccCcHHHHHHHHHHHHcC--CCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCc-eEEEEECcHHHHHHHHHHHHHh
Confidence 34555799999988666532 2389999999999999999999887655443345 8999999999999999988875
No 21
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.62 E-value=9.1e-14 Score=156.24 Aligned_cols=68 Identities=19% Similarity=0.218 Sum_probs=57.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccchhhHHHHHHHHHhh
Q 004358 14 YDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (759)
Q Consensus 14 y~~~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~l 90 (759)
++ +||.|.+.+..+.+ + ++++.+|||+|||++++.+++..... .+. +++|.+||.++..|+.+++.+.
T Consensus 8 ~~-l~~~Q~~~i~~~~~----~-~~ll~~~tG~GKT~~~~~~~~~~~~~--~~~-~~liv~P~~~L~~q~~~~~~~~ 75 (494)
T 1wp9_A 8 IQ-PRIYQEVIYAKCKE----T-NCLIVLPTGLGKTLIAMMIAEYRLTK--YGG-KVLMLAPTKPLVLQHAESFRRL 75 (494)
T ss_dssp HC-CCHHHHHHHHHGGG----S-CEEEECCTTSCHHHHHHHHHHHHHHH--SCS-CEEEECSSHHHHHHHHHHHHHH
T ss_pred CC-ccHHHHHHHHHHhh----C-CEEEEcCCCCCHHHHHHHHHHHHHhc--CCC-eEEEEECCHHHHHHHHHHHHHH
Confidence 44 59999999977653 4 99999999999999999998876652 245 8999999999999999999875
No 22
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.59 E-value=1.7e-13 Score=162.63 Aligned_cols=73 Identities=26% Similarity=0.241 Sum_probs=61.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccchhhHHHHHHHHHhh
Q 004358 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (759)
Q Consensus 12 FPy~~~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~l 90 (759)
++|..++|.|.+.+..+ +.+++++++.||||+|||+++..+++...... +. +++|.+||+++..|+.++++++
T Consensus 26 ~g~~~l~~~Q~~~i~~~---~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--~~-~il~i~P~r~La~q~~~~~~~~ 98 (715)
T 2va8_A 26 RGIKKLNPPQTEAVKKG---LLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN--GG-KAIYVTPLRALTNEKYLTFKDW 98 (715)
T ss_dssp TSCCBCCHHHHHHHHTT---TTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS--CS-EEEEECSCHHHHHHHHHHHGGG
T ss_pred CCCCCCCHHHHHHHHHH---hcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC--CC-eEEEEeCcHHHHHHHHHHHHHh
Confidence 68877899999988652 34589999999999999999999988765433 46 9999999999999999988654
No 23
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.55 E-value=6.4e-13 Score=163.81 Aligned_cols=76 Identities=14% Similarity=0.094 Sum_probs=67.3
Q ss_pred eeCCCCCCCHHHHHHHHHHHHHHHhCC--cEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccchhhHHHHHHHH
Q 004358 10 VYFPYDNIYPEQYSYMLELKRALDAKG--HCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAEL 87 (759)
Q Consensus 10 v~FPy~~~r~~Q~~~~~~v~~al~~~~--~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el 87 (759)
..|||++ +|.|.+.+..+.+.+.+++ .+++.||||+|||++++.+++.... .++ +++|.+||..+..|..+++
T Consensus 598 ~~f~~~~-t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~---~g~-~vlvlvPt~~La~Q~~~~~ 672 (1151)
T 2eyq_A 598 DSFPFET-TPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD---NHK-QVAVLVPTTLLAQQHYDNF 672 (1151)
T ss_dssp HTCCSCC-CHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT---TTC-EEEEECSSHHHHHHHHHHH
T ss_pred HhCCCCC-CHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH---hCC-eEEEEechHHHHHHHHHHH
Confidence 4699996 9999999999999998886 8999999999999999988876543 256 9999999999999999998
Q ss_pred Hhh
Q 004358 88 KLL 90 (759)
Q Consensus 88 ~~l 90 (759)
+..
T Consensus 673 ~~~ 675 (1151)
T 2eyq_A 673 RDR 675 (1151)
T ss_dssp HHH
T ss_pred HHH
Confidence 864
No 24
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.54 E-value=1.3e-13 Score=163.14 Aligned_cols=72 Identities=18% Similarity=0.199 Sum_probs=58.7
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccchhhHHHHHHHHHhh
Q 004358 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (759)
Q Consensus 11 ~FPy~~~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~l 90 (759)
.++|..+||.|.+.+..+ .+++++++.||||+|||+++..|++..... +. +++|.+||+++..|..++++++
T Consensus 20 ~~g~~~l~~~Q~~~i~~i----~~~~~~lv~apTGsGKT~~~~l~il~~~~~---~~-~~l~i~P~r~La~q~~~~~~~~ 91 (702)
T 2p6r_A 20 EEGIEELFPPQAEAVEKV----FSGKNLLLAMPTAAGKTLLAEMAMVREAIK---GG-KSLYVVPLRALAGEKYESFKKW 91 (702)
T ss_dssp CC---CCCCCCHHHHHHH----TTCSCEEEECSSHHHHHHHHHHHHHHHHHT---TC-CEEEEESSHHHHHHHHHHHTTT
T ss_pred hCCCCCCCHHHHHHHHHH----hCCCcEEEEcCCccHHHHHHHHHHHHHHHh---CC-cEEEEeCcHHHHHHHHHHHHHH
Confidence 378877899999988774 368999999999999999999998866542 45 8999999999999999988654
No 25
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.53 E-value=1.8e-13 Score=166.15 Aligned_cols=74 Identities=16% Similarity=0.155 Sum_probs=62.1
Q ss_pred eeeeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccchhhHHHHHHHH
Q 004358 8 VTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAEL 87 (759)
Q Consensus 8 ~~v~FPy~~~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el 87 (759)
....|||++ +|.|.+.+..+ .+++++++.||||+|||++|+.++...... +. +++|.+||+++..|+.+++
T Consensus 32 ~~~~~~f~l-~~~Q~~aI~~i----l~g~~vlv~apTGsGKTlv~~~~i~~~~~~---g~-~vlvl~PtraLa~Q~~~~l 102 (997)
T 4a4z_A 32 PARSWPFEL-DTFQKEAVYHL----EQGDSVFVAAHTSAGKTVVAEYAIAMAHRN---MT-KTIYTSPIKALSNQKFRDF 102 (997)
T ss_dssp CSCCCSSCC-CHHHHHHHHHH----HTTCEEEEECCTTSCSHHHHHHHHHHHHHT---TC-EEEEEESCGGGHHHHHHHH
T ss_pred HHHhCCCCC-CHHHHHHHHHH----HcCCCEEEEECCCCcHHHHHHHHHHHHHhc---CC-eEEEEeCCHHHHHHHHHHH
Confidence 345799986 99999887554 578999999999999999999987766542 45 8999999999999999988
Q ss_pred Hhh
Q 004358 88 KLL 90 (759)
Q Consensus 88 ~~l 90 (759)
+..
T Consensus 103 ~~~ 105 (997)
T 4a4z_A 103 KET 105 (997)
T ss_dssp HTT
T ss_pred HHH
Confidence 864
No 26
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.53 E-value=6.5e-13 Score=162.79 Aligned_cols=74 Identities=19% Similarity=0.203 Sum_probs=63.6
Q ss_pred eeeeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccchhhHHHHHHHH
Q 004358 8 VTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAEL 87 (759)
Q Consensus 8 ~~v~FPy~~~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el 87 (759)
....|||++ +|.|.+.+..+ .++..+++.||||+|||++|+.|++..... ++ +++|.+||+++..|..+++
T Consensus 177 ~~~~~~f~l-tp~Q~~AI~~i----~~g~dvLV~ApTGSGKTlva~l~i~~~l~~---g~-rvlvl~PtraLa~Q~~~~l 247 (1108)
T 3l9o_A 177 EARTYPFTL-DPFQDTAISCI----DRGESVLVSAHTSAGKTVVAEYAIAQSLKN---KQ-RVIYTSPIKALSNQKYREL 247 (1108)
T ss_dssp CSSCCSSCC-CHHHHHHHHHH----TTTCCEEEECCSSSHHHHHHHHHHHHHHHT---TC-EEEEEESSHHHHHHHHHHH
T ss_pred HHHhCCCCC-CHHHHHHHHHH----HcCCCEEEECCCCCChHHHHHHHHHHHHhc---CC-eEEEEcCcHHHHHHHHHHH
Confidence 455789985 99999988654 578999999999999999999998876642 46 9999999999999999998
Q ss_pred Hhh
Q 004358 88 KLL 90 (759)
Q Consensus 88 ~~l 90 (759)
+..
T Consensus 248 ~~~ 250 (1108)
T 3l9o_A 248 LAE 250 (1108)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 27
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.53 E-value=9e-13 Score=160.12 Aligned_cols=73 Identities=19% Similarity=0.241 Sum_probs=62.5
Q ss_pred eeeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccchhhHHHHHHHHH
Q 004358 9 TVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELK 88 (759)
Q Consensus 9 ~v~FPy~~~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~ 88 (759)
.-.|||+ ++|.|.+.+..+ .+++++++.||||+|||++|+.|++..... +. +++|.+||+++..|..+++.
T Consensus 80 ~~~~~f~-L~~~Q~eai~~l----~~g~~vLV~apTGSGKTlva~lai~~~l~~---g~-rvL~l~PtkaLa~Q~~~~l~ 150 (1010)
T 2xgj_A 80 ARTYPFT-LDPFQDTAISCI----DRGESVLVSAHTSAGKTVVAEYAIAQSLKN---KQ-RVIYTSPIKALSNQKYRELL 150 (1010)
T ss_dssp SCCCSSC-CCHHHHHHHHHH----HHTCEEEEECCTTSCHHHHHHHHHHHHHHT---TC-EEEEEESSHHHHHHHHHHHH
T ss_pred HHhCCCC-CCHHHHHHHHHH----HcCCCEEEECCCCCChHHHHHHHHHHHhcc---CC-eEEEECChHHHHHHHHHHHH
Confidence 3468998 599999988764 468899999999999999999888776542 46 99999999999999999988
Q ss_pred hh
Q 004358 89 LL 90 (759)
Q Consensus 89 ~l 90 (759)
..
T Consensus 151 ~~ 152 (1010)
T 2xgj_A 151 AE 152 (1010)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 28
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.50 E-value=6.3e-13 Score=151.31 Aligned_cols=70 Identities=14% Similarity=0.118 Sum_probs=59.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccchhhHHHHHHHHHhh
Q 004358 13 PYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (759)
Q Consensus 13 Py~~~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~l 90 (759)
|+++ ||.|.+.+..+.+ +..+++.+|||+|||++++.++....... +. +++|.+||.++..|..+++.++
T Consensus 111 ~~~l-~~~Q~~ai~~~~~----~~~~ll~~~tGsGKT~~~~~~~~~~~~~~--~~-~vlvl~P~~~L~~Q~~~~~~~~ 180 (510)
T 2oca_A 111 RIEP-HWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLENY--EG-KILIIVPTTALTTQMADDFVDY 180 (510)
T ss_dssp EECC-CHHHHHHHHHHHH----HSEEEEECCSTTTHHHHHHHHHHHHHHHC--SS-EEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCC-CHHHHHHHHHHHh----cCCcEEEeCCCCCHHHHHHHHHHHHHhCC--CC-eEEEEECcHHHHHHHHHHHHHh
Confidence 5564 9999999987764 47899999999999999999887766532 35 8999999999999999999774
No 29
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.49 E-value=1.2e-12 Score=155.29 Aligned_cols=73 Identities=19% Similarity=0.268 Sum_probs=61.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccchhhHHHHHHHHHhh
Q 004358 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (759)
Q Consensus 12 FPy~~~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~l 90 (759)
++|..+||.|.+.+..+ +.+++++++.||||+|||+++..|++...... +. +++|.+||+++..|+.++++++
T Consensus 19 ~g~~~l~~~Q~~~i~~~---~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--~~-~~l~i~P~raLa~q~~~~~~~l 91 (720)
T 2zj8_A 19 RGIESFYPPQAEALKSG---ILEGKNALISIPTASGKTLIAEIAMVHRILTQ--GG-KAVYIVPLKALAEEKFQEFQDW 91 (720)
T ss_dssp TTCCBCCHHHHHHHTTT---GGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH--CS-EEEEECSSGGGHHHHHHHTGGG
T ss_pred CCCCCCCHHHHHHHHHH---hcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC--CC-EEEEEcCcHHHHHHHHHHHHHH
Confidence 78887899999988652 34589999999999999999999988665432 46 9999999999999999988654
No 30
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.48 E-value=6e-12 Score=145.84 Aligned_cols=71 Identities=14% Similarity=0.160 Sum_probs=47.7
Q ss_pred CCHHHHHHHHHHHHHHHhC-CcEEEEcCCCCcHHHHHHHHHHHHHHhC------CCCCcEEEEEccchhhHHHHH-HHHH
Q 004358 17 IYPEQYSYMLELKRALDAK-GHCLLEMPTGTGKTIALLSLITSYVLSK------PENPVKLIYCTRTVHEMEKTL-AELK 88 (759)
Q Consensus 17 ~r~~Q~~~~~~v~~al~~~-~~~liEaPTGtGKTla~L~~~l~~~~~~------~~~~~kvi~~T~T~~l~~Q~~-~el~ 88 (759)
+||.|.+.+..+.+++.++ +.+++.+|||+|||++++..+....... ..++ +|+|.++|.++.+|+. ++++
T Consensus 179 lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~-~vlil~P~~~L~~Q~~~~~~~ 257 (590)
T 3h1t_A 179 PRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKP-RILFLADRNVLVDDPKDKTFT 257 (590)
T ss_dssp CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCC-CEEEEEC-----------CCT
T ss_pred chHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCC-eEEEEeCCHHHHHHHHHHHHH
Confidence 6999999999999999887 5689999999999999776544433321 0346 8999999999999988 5444
No 31
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.47 E-value=1.1e-13 Score=139.72 Aligned_cols=76 Identities=13% Similarity=0.097 Sum_probs=64.3
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccchhhHHHHHHHHHhh
Q 004358 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (759)
Q Consensus 11 ~FPy~~~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~l 90 (759)
.++|..+||.|.+.+..+. +++++++.||||+|||++|++|++.+......+. +++|.++|.++..|+.++++++
T Consensus 31 ~~g~~~~~~~Q~~~i~~~~----~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~-~~lil~Pt~~L~~q~~~~~~~~ 105 (224)
T 1qde_A 31 GYGFEEPSAIQQRAIMPII----EGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAP-QALMLAPTRELALQIQKVVMAL 105 (224)
T ss_dssp HHTCCSCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSC-CEEEECSSHHHHHHHHHHHHHH
T ss_pred HCCCCCCcHHHHHHHHHHh----cCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCc-eEEEEECCHHHHHHHHHHHHHH
Confidence 3578778999999887654 6789999999999999999999988765444445 8999999999999999998876
Q ss_pred h
Q 004358 91 H 91 (759)
Q Consensus 91 ~ 91 (759)
.
T Consensus 106 ~ 106 (224)
T 1qde_A 106 A 106 (224)
T ss_dssp T
T ss_pred h
Confidence 3
No 32
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.47 E-value=1.2e-13 Score=139.74 Aligned_cols=74 Identities=20% Similarity=0.042 Sum_probs=61.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhC------CCCCcEEEEEccchhhHHHHHH
Q 004358 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSK------PENPVKLIYCTRTVHEMEKTLA 85 (759)
Q Consensus 12 FPy~~~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~------~~~~~kvi~~T~T~~l~~Q~~~ 85 (759)
++|..|||.|.+.+..+. +++++++.||||+|||++|++|++...... ..+. +++|.++|.++..|+.+
T Consensus 38 ~g~~~~~~~Q~~~i~~~~----~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~-~~lil~Pt~~L~~q~~~ 112 (228)
T 3iuy_A 38 VGILKPTPIQSQAWPIIL----QGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGP-GMLVLTPTRELALHVEA 112 (228)
T ss_dssp HTCCSCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCC-SEEEECSSHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCC-cEEEEeCCHHHHHHHHH
Confidence 567778999999986654 688999999999999999999988765431 1345 89999999999999999
Q ss_pred HHHhh
Q 004358 86 ELKLL 90 (759)
Q Consensus 86 el~~l 90 (759)
+++++
T Consensus 113 ~~~~~ 117 (228)
T 3iuy_A 113 ECSKY 117 (228)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98875
No 33
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.47 E-value=1.2e-13 Score=137.30 Aligned_cols=76 Identities=16% Similarity=0.029 Sum_probs=64.2
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccchhhHHHHHHHHHhh
Q 004358 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (759)
Q Consensus 11 ~FPy~~~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~l 90 (759)
.++|..|||.|.+.+..+. +++++++.||||+|||++|++|++........+. +++|.++|.++..|+.++++++
T Consensus 20 ~~g~~~~~~~Q~~~i~~~~----~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~-~~lil~Pt~~L~~q~~~~~~~~ 94 (206)
T 1vec_A 20 EMGWEKPSPIQEESIPIAL----SGRDILARAKNGTGKSGAYLIPLLERLDLKKDNI-QAMVIVPTRELALQVSQICIQV 94 (206)
T ss_dssp TTTCCSCCHHHHHHHHHHH----TTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSC-CEEEECSCHHHHHHHHHHHHHH
T ss_pred HCCCCCCCHHHHHHHHHHc----cCCCEEEECCCCCchHHHHHHHHHHHhcccCCCe-eEEEEeCcHHHHHHHHHHHHHH
Confidence 3678888999999886655 6789999999999999999999987754433345 8999999999999999988876
Q ss_pred h
Q 004358 91 H 91 (759)
Q Consensus 91 ~ 91 (759)
.
T Consensus 95 ~ 95 (206)
T 1vec_A 95 S 95 (206)
T ss_dssp T
T ss_pred H
Confidence 4
No 34
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.46 E-value=1.8e-13 Score=139.93 Aligned_cols=77 Identities=13% Similarity=0.007 Sum_probs=64.6
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCC-----CCCcEEEEEccchhhHHHHHH
Q 004358 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKP-----ENPVKLIYCTRTVHEMEKTLA 85 (759)
Q Consensus 11 ~FPy~~~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~-----~~~~kvi~~T~T~~l~~Q~~~ 85 (759)
.++|..|||.|.+.+..+. +++++++.||||+|||++|++|++......+ .+. +++|.+||.++..|+.+
T Consensus 46 ~~g~~~~~~~Q~~~i~~~~----~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~-~~lil~Pt~~L~~Q~~~ 120 (242)
T 3fe2_A 46 RQNFTEPTAIQAQGWPVAL----SGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGP-ICLVLAPTRELAQQVQQ 120 (242)
T ss_dssp TTTCCSCCHHHHHHHHHHH----HTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCC-SEEEECSSHHHHHHHHH
T ss_pred HCCCCCCCHHHHHHHHHHh----CCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCC-EEEEEeCcHHHHHHHHH
Confidence 3678878999999987655 6789999999999999999999998766431 245 89999999999999999
Q ss_pred HHHhhhh
Q 004358 86 ELKLLHN 92 (759)
Q Consensus 86 el~~l~~ 92 (759)
+++++..
T Consensus 121 ~~~~~~~ 127 (242)
T 3fe2_A 121 VAAEYCR 127 (242)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8887643
No 35
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.44 E-value=1.3e-13 Score=141.18 Aligned_cols=75 Identities=19% Similarity=0.143 Sum_probs=63.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCC-CCCcEEEEEccchhhHHHHHHHHHhh
Q 004358 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKP-ENPVKLIYCTRTVHEMEKTLAELKLL 90 (759)
Q Consensus 12 FPy~~~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~-~~~~kvi~~T~T~~l~~Q~~~el~~l 90 (759)
.+|..|||.|.+.+..+. +++++++.||||+|||++|++|++....... .+. +++|.+||.++..|+.++++++
T Consensus 47 ~g~~~~~~~Q~~~i~~~~----~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~-~~lil~Pt~~L~~q~~~~~~~~ 121 (245)
T 3dkp_A 47 AGFQMPTPIQMQAIPVML----HGRELLASAPTGSGKTLAFSIPILMQLKQPANKGF-RALIISPTRELASQIHRELIKI 121 (245)
T ss_dssp TTCCSCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSC-CEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHh----CCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCc-eEEEEeCCHHHHHHHHHHHHHH
Confidence 478778999999986655 6789999999999999999999988765322 234 8999999999999999999886
Q ss_pred h
Q 004358 91 H 91 (759)
Q Consensus 91 ~ 91 (759)
.
T Consensus 122 ~ 122 (245)
T 3dkp_A 122 S 122 (245)
T ss_dssp T
T ss_pred h
Confidence 3
No 36
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.44 E-value=3.5e-13 Score=138.48 Aligned_cols=76 Identities=17% Similarity=0.043 Sum_probs=65.2
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccchhhHHHHHHHHHhh
Q 004358 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (759)
Q Consensus 11 ~FPy~~~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~l 90 (759)
.++|..+||.|.+.+..+. +++.+++.||||+|||++|++|++......+.+. +++|.++|.++..|+.++++++
T Consensus 60 ~~g~~~~~~~Q~~~i~~i~----~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~-~~lil~Ptr~L~~q~~~~~~~~ 134 (249)
T 3ber_A 60 QLGWTKPTKIQIEAIPLAL----QGRDIIGLAETGSGKTGAFALPILNALLETPQRL-FALVLTPTRELAFQISEQFEAL 134 (249)
T ss_dssp HTTCCSCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSS-CEEEECSSHHHHHHHHHHHHHH
T ss_pred HcCCCCCCHHHHHHHHHHh----CCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCc-eEEEEeCCHHHHHHHHHHHHHH
Confidence 4678778999999886655 6789999999999999999999988766554445 8999999999999999998876
Q ss_pred h
Q 004358 91 H 91 (759)
Q Consensus 91 ~ 91 (759)
.
T Consensus 135 ~ 135 (249)
T 3ber_A 135 G 135 (249)
T ss_dssp H
T ss_pred h
Confidence 4
No 37
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.43 E-value=3.8e-13 Score=136.42 Aligned_cols=76 Identities=11% Similarity=0.101 Sum_probs=63.8
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccchhhHHHHHHHHHhh
Q 004358 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (759)
Q Consensus 11 ~FPy~~~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~l 90 (759)
.++|..|||.|.+.+..+. +++++++.||||+|||++|++|++........+. +++|.++|.++..|+.++++++
T Consensus 41 ~~g~~~~~~~Q~~~i~~~~----~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~-~~lil~Pt~~L~~q~~~~~~~~ 115 (230)
T 2oxc_A 41 AAGFERPSPVQLKAIPLGR----CGLDLIVQAKSGTGKTCVFSTIALDSLVLENLST-QILILAPTREIAVQIHSVITAI 115 (230)
T ss_dssp HTTCCSCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSC-CEEEECSSHHHHHHHHHHHHHH
T ss_pred HCCCCCCCHHHHHHHHHHh----CCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCc-eEEEEeCCHHHHHHHHHHHHHH
Confidence 3678878999999987654 6789999999999999999999887754433345 8999999999999999998876
Q ss_pred h
Q 004358 91 H 91 (759)
Q Consensus 91 ~ 91 (759)
.
T Consensus 116 ~ 116 (230)
T 2oxc_A 116 G 116 (230)
T ss_dssp T
T ss_pred h
Confidence 3
No 38
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.43 E-value=3.5e-13 Score=135.53 Aligned_cols=75 Identities=11% Similarity=0.034 Sum_probs=63.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccchhhHHHHHHHHHhhh
Q 004358 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLH 91 (759)
Q Consensus 12 FPy~~~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~l~ 91 (759)
++|..|||.|.+.+..+. +++++++.||||+|||++|++|++........+. +++|.++|.++..|+.++++++.
T Consensus 32 ~g~~~~~~~Q~~~i~~~~----~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~-~~lil~Pt~~L~~q~~~~~~~~~ 106 (220)
T 1t6n_A 32 CGFEHPSEVQHECIPQAI----LGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQV-SVLVMCHTRELAFQISKEYERFS 106 (220)
T ss_dssp TTCCCCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCC-CEEEECSCHHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHh----CCCCEEEECCCCCchhhhhhHHHHHhhhccCCCE-EEEEEeCCHHHHHHHHHHHHHHH
Confidence 678878999999987665 5788999999999999999999988754433334 89999999999999999998864
No 39
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.43 E-value=2e-13 Score=137.30 Aligned_cols=76 Identities=16% Similarity=0.045 Sum_probs=64.4
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccchhhHHHHHHHHHhh
Q 004358 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (759)
Q Consensus 11 ~FPy~~~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~l 90 (759)
.+.|..|||.|.+.+..+. +++++++.||||+|||++|++|++........+. +++|.++|.++..|+.++++++
T Consensus 21 ~~g~~~~~~~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~-~~lil~Pt~~L~~q~~~~~~~~ 95 (219)
T 1q0u_A 21 TLRFYKPTEIQERIIPGAL----RGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEV-QAVITAPTRELATQIYHETLKI 95 (219)
T ss_dssp HTTCCSCCHHHHHHHHHHH----HTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSC-CEEEECSSHHHHHHHHHHHHHH
T ss_pred HCCCCCCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCc-eEEEEcCcHHHHHHHHHHHHHH
Confidence 3677778999999997665 5789999999999999999999988765433345 8999999999999999998886
Q ss_pred h
Q 004358 91 H 91 (759)
Q Consensus 91 ~ 91 (759)
.
T Consensus 96 ~ 96 (219)
T 1q0u_A 96 T 96 (219)
T ss_dssp H
T ss_pred h
Confidence 4
No 40
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.43 E-value=5.2e-13 Score=137.40 Aligned_cols=75 Identities=21% Similarity=0.219 Sum_probs=62.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCC---------CCCcEEEEEccchhhHHH
Q 004358 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKP---------ENPVKLIYCTRTVHEMEK 82 (759)
Q Consensus 12 FPy~~~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~---------~~~~kvi~~T~T~~l~~Q 82 (759)
+.|..|||.|.+.+..+. +++++++.||||+|||++|++|++....... .+. +++|.++|.++..|
T Consensus 41 ~g~~~~~~~Q~~~i~~i~----~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~-~~lil~Pt~~L~~q 115 (253)
T 1wrb_A 41 ASYQRPTPIQKNAIPAIL----EHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYP-KCLILAPTRELAIQ 115 (253)
T ss_dssp TTCCSCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCC-SEEEECSSHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCc-eEEEEECCHHHHHH
Confidence 567778999999987655 5789999999999999999999988765321 124 89999999999999
Q ss_pred HHHHHHhhh
Q 004358 83 TLAELKLLH 91 (759)
Q Consensus 83 ~~~el~~l~ 91 (759)
+.++++++.
T Consensus 116 ~~~~~~~~~ 124 (253)
T 1wrb_A 116 ILSESQKFS 124 (253)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999988763
No 41
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.42 E-value=1.3e-12 Score=159.94 Aligned_cols=71 Identities=14% Similarity=0.065 Sum_probs=60.7
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccchhhHHHHHHHHHhh
Q 004358 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (759)
Q Consensus 11 ~FPy~~~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~l 90 (759)
.|+|. | |.|.+.+..+. +++++++.||||+|||+ |++|++...... +. +++|.+||.++..|+.+.++.+
T Consensus 53 ~~g~~-p-~iQ~~ai~~il----~g~dvlv~apTGSGKTl-~~lp~l~~~~~~--~~-~~lil~PtreLa~Q~~~~l~~l 122 (1054)
T 1gku_B 53 CVGEP-R-AIQKMWAKRIL----RKESFAATAPTGVGKTS-FGLAMSLFLALK--GK-RCYVIFPTSLLVIQAAETIRKY 122 (1054)
T ss_dssp TTCSC-C-HHHHHHHHHHH----TTCCEECCCCBTSCSHH-HHHHHHHHHHTT--SC-CEEEEESCHHHHHHHHHHHHHH
T ss_pred hcCCC-H-HHHHHHHHHHH----hCCCEEEEcCCCCCHHH-HHHHHHHHHhhc--CC-eEEEEeccHHHHHHHHHHHHHH
Confidence 47888 7 99999987765 67899999999999998 888888776543 45 8999999999999999999886
Q ss_pred h
Q 004358 91 H 91 (759)
Q Consensus 91 ~ 91 (759)
.
T Consensus 123 ~ 123 (1054)
T 1gku_B 123 A 123 (1054)
T ss_dssp H
T ss_pred H
Confidence 4
No 42
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.42 E-value=6.5e-13 Score=135.17 Aligned_cols=74 Identities=18% Similarity=0.118 Sum_probs=62.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhC----CCCCcEEEEEccchhhHHHHHHHH
Q 004358 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSK----PENPVKLIYCTRTVHEMEKTLAEL 87 (759)
Q Consensus 12 FPy~~~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~----~~~~~kvi~~T~T~~l~~Q~~~el 87 (759)
+.|..|+|.|.+.+..+. +++++++.||||+|||++|++|++...... ..+. +++|.+||.++..|+.+++
T Consensus 43 ~~~~~~~~~Q~~~i~~~~----~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~-~~lil~Pt~~L~~q~~~~~ 117 (236)
T 2pl3_A 43 AQYRLVTEIQKQTIGLAL----QGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGL-GVLIISPTRELAYQTFEVL 117 (236)
T ss_dssp TTCCBCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCC-CEEEECSSHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHh----CCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCc-eEEEEeCCHHHHHHHHHHH
Confidence 567778999999886654 678999999999999999999998776432 1245 8999999999999999998
Q ss_pred Hhh
Q 004358 88 KLL 90 (759)
Q Consensus 88 ~~l 90 (759)
+.+
T Consensus 118 ~~~ 120 (236)
T 2pl3_A 118 RKV 120 (236)
T ss_dssp HHH
T ss_pred HHH
Confidence 876
No 43
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.41 E-value=1.2e-11 Score=157.19 Aligned_cols=72 Identities=19% Similarity=0.241 Sum_probs=59.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccchhhHHHHHHHHHhh
Q 004358 14 YDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (759)
Q Consensus 14 y~~~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~l 90 (759)
|+.+.|.|.+....++ ..++++++.||||+|||+++.+|++......+ +. +++|.+||+++..|..+++...
T Consensus 924 f~~fnpiQ~q~~~~l~---~~~~nvlv~APTGSGKTliaelail~~l~~~~-~~-kavyi~P~raLa~q~~~~~~~~ 995 (1724)
T 4f92_B 924 FPFFNPIQTQVFNTVY---NSDDNVFVGAPTGSGKTICAEFAILRMLLQSS-EG-RCVYITPMEALAEQVYMDWYEK 995 (1724)
T ss_dssp CSBCCHHHHHHHHHHH---SCCSCEEEECCTTSCCHHHHHHHHHHHHHHCT-TC-CEEEECSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHh---cCCCcEEEEeCCCCCchHHHHHHHHHHHHhCC-CC-EEEEEcChHHHHHHHHHHHHHH
Confidence 4447899999876654 45679999999999999999999887766543 45 8999999999999999998753
No 44
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.41 E-value=6.7e-13 Score=131.97 Aligned_cols=74 Identities=20% Similarity=0.135 Sum_probs=62.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhC---CCCCcEEEEEccchhhHHHHHHHHH
Q 004358 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSK---PENPVKLIYCTRTVHEMEKTLAELK 88 (759)
Q Consensus 12 FPy~~~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~---~~~~~kvi~~T~T~~l~~Q~~~el~ 88 (759)
+.|..|||.|.+.+..+. +++++++.||||+|||++|+.|++...... ..+. +++|.+||.++..|+.++++
T Consensus 19 ~~~~~~~~~Q~~~i~~~~----~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~-~~lil~P~~~L~~q~~~~~~ 93 (207)
T 2gxq_A 19 RGLTTPTPIQAAALPLAL----EGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKP-RALVLTPTRELALQVASELT 93 (207)
T ss_dssp TTCCSCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCC-SEEEECSSHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHc----CCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCC-cEEEEECCHHHHHHHHHHHH
Confidence 577778999999987654 678999999999999999999988775421 1245 89999999999999999988
Q ss_pred hh
Q 004358 89 LL 90 (759)
Q Consensus 89 ~l 90 (759)
++
T Consensus 94 ~~ 95 (207)
T 2gxq_A 94 AV 95 (207)
T ss_dssp HH
T ss_pred HH
Confidence 76
No 45
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.39 E-value=1.1e-11 Score=151.89 Aligned_cols=71 Identities=23% Similarity=0.159 Sum_probs=60.5
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccchhhHHHHHHHHHhh
Q 004358 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (759)
Q Consensus 11 ~FPy~~~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~l 90 (759)
.+||+ |+|.|.+.+..+. +++++++.||||+|||+++|.+++.... .+. +++|.+||.++..|+.+.++.+
T Consensus 74 ~~gf~-pt~iQ~~ai~~il----~g~dvlv~ApTGSGKTl~~l~~il~~~~---~~~-~~Lil~PtreLa~Q~~~~l~~l 144 (1104)
T 4ddu_A 74 KFGKD-LTGYQRLWAKRIV----QGKSFTMVAPTGVGKTTFGMMTALWLAR---KGK-KSALVFPTVTLVKQTLERLQKL 144 (1104)
T ss_dssp HSSSC-CCHHHHHHHHHHT----TTCCEEECCSTTCCHHHHHHHHHHHHHT---TTC-CEEEEESSHHHHHHHHHHHHTT
T ss_pred hcCCC-CCHHHHHHHHHHH----cCCCEEEEeCCCCcHHHHHHHHHHHHHh---cCC-eEEEEechHHHHHHHHHHHHHh
Confidence 47887 5999999887665 5789999999999999999988776652 245 8999999999999999998875
No 46
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.39 E-value=1.8e-11 Score=155.53 Aligned_cols=76 Identities=21% Similarity=0.247 Sum_probs=62.6
Q ss_pred eCC-CCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhC--------CCCCcEEEEEccchhhHH
Q 004358 11 YFP-YDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSK--------PENPVKLIYCTRTVHEME 81 (759)
Q Consensus 11 ~FP-y~~~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~--------~~~~~kvi~~T~T~~l~~ 81 (759)
.|| |+.+.|.|.+.... ++..++++++.||||+|||+++.+|++...... ..+. |++|.+||++|..
T Consensus 73 ~f~g~~~ln~iQs~~~~~---al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~-k~lyiaP~kALa~ 148 (1724)
T 4f92_B 73 GFEGFKTLNRIQSKLYRA---ALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDF-KIIYIAPMRSLVQ 148 (1724)
T ss_dssp TCTTCSBCCHHHHHTHHH---HHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSC-EEEEECSSHHHHH
T ss_pred hcCCCCCCCHHHHHHHHH---HHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCC-EEEEECCHHHHHH
Confidence 365 88889999886643 566789999999999999999999988776532 1245 9999999999999
Q ss_pred HHHHHHHhh
Q 004358 82 KTLAELKLL 90 (759)
Q Consensus 82 Q~~~el~~l 90 (759)
|..+++.+.
T Consensus 149 e~~~~l~~~ 157 (1724)
T 4f92_B 149 EMVGSFGKR 157 (1724)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998764
No 47
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.38 E-value=8.1e-13 Score=134.61 Aligned_cols=75 Identities=12% Similarity=0.084 Sum_probs=63.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccchhhHHHHHHHHHhhh
Q 004358 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLH 91 (759)
Q Consensus 12 FPy~~~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~l~ 91 (759)
++|..|||.|.+.+..+. +++++++.||||+|||++|++|++........+. +++|.++|.++..|+.++++++.
T Consensus 48 ~g~~~~~~~Q~~ai~~i~----~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~-~~lil~Pt~~L~~q~~~~~~~~~ 122 (237)
T 3bor_A 48 YGFEKPSAIQQRAIIPCI----KGYDVIAQAQSGTGKTATFAISILQQLEIEFKET-QALVLAPTRELAQQIQKVILALG 122 (237)
T ss_dssp HTCCSCCHHHHHHHHHHH----TTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSC-CEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHh----CCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCc-eEEEEECcHHHHHHHHHHHHHHh
Confidence 578878999999887655 6789999999999999999999987754333345 89999999999999999988763
No 48
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.35 E-value=2e-12 Score=133.75 Aligned_cols=75 Identities=21% Similarity=0.210 Sum_probs=63.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCC----CCCcEEEEEccchhhHHHHHHHH
Q 004358 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKP----ENPVKLIYCTRTVHEMEKTLAEL 87 (759)
Q Consensus 12 FPy~~~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~----~~~~kvi~~T~T~~l~~Q~~~el 87 (759)
++|..+||.|.+++..+. +++++++.||||+|||++|++|++......+ .+. +++|.+||.++..|+.+++
T Consensus 72 ~g~~~~~~~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~-~~lil~Pt~~La~q~~~~~ 146 (262)
T 3ly5_A 72 MGFTNMTEIQHKSIRPLL----EGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGT-GVLILSPTRELAMQTFGVL 146 (262)
T ss_dssp TTCCBCCHHHHHHHHHHH----HTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCC-CEEEECSSHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHh----CCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCc-eEEEEeCCHHHHHHHHHHH
Confidence 567778999999987765 4688999999999999999999998765421 245 8999999999999999999
Q ss_pred Hhhh
Q 004358 88 KLLH 91 (759)
Q Consensus 88 ~~l~ 91 (759)
+++.
T Consensus 147 ~~~~ 150 (262)
T 3ly5_A 147 KELM 150 (262)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 8864
No 49
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.27 E-value=7.5e-12 Score=132.09 Aligned_cols=75 Identities=17% Similarity=0.147 Sum_probs=63.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC--CcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccchhhHHHHHHHHHh
Q 004358 12 FPYDNIYPEQYSYMLELKRALDAK--GHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKL 89 (759)
Q Consensus 12 FPy~~~r~~Q~~~~~~v~~al~~~--~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~ 89 (759)
+.|..|+|.|.+.+..+. .+ +++++.||||+|||++|++|++........+. +++|.+||.++..|+.+.++.
T Consensus 110 ~g~~~pt~iQ~~ai~~il----~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~-~~lil~PtreLa~Q~~~~~~~ 184 (300)
T 3fmo_B 110 MGFNRPSKIQENALPLML----AEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYP-QCLCLSPTYELALQTGKVIEQ 184 (300)
T ss_dssp TTCCSCCHHHHHHHHHHT----SSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSC-CEEEECSSHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHH----cCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCc-eEEEEcCcHHHHHHHHHHHHH
Confidence 567878999999886554 44 89999999999999999999998765544444 899999999999999998887
Q ss_pred hh
Q 004358 90 LH 91 (759)
Q Consensus 90 l~ 91 (759)
+.
T Consensus 185 l~ 186 (300)
T 3fmo_B 185 MG 186 (300)
T ss_dssp HT
T ss_pred HH
Confidence 63
No 50
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.25 E-value=1.6e-11 Score=122.51 Aligned_cols=73 Identities=21% Similarity=0.209 Sum_probs=57.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhC---CCCCcEEEEEccchhhHHH-HHHHH
Q 004358 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSK---PENPVKLIYCTRTVHEMEK-TLAEL 87 (759)
Q Consensus 12 FPy~~~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~---~~~~~kvi~~T~T~~l~~Q-~~~el 87 (759)
+.++ +||.|.+.+..+. +++++++.||||+|||++++.+++...... ..+. +++|.++|.++.+| +.+++
T Consensus 30 ~~~~-l~~~Q~~~i~~~~----~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~-~~lil~p~~~L~~q~~~~~~ 103 (216)
T 3b6e_A 30 PELQ-LRPYQMEVAQPAL----EGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPG-KVIVLVNKVLLVEQLFRKEF 103 (216)
T ss_dssp CCCC-CCHHHHHHHHHHH----TTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCC-CEEEEESSHHHHHHHHHHTH
T ss_pred CCCC-chHHHHHHHHHHh----cCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCC-cEEEEECHHHHHHHHHHHHH
Confidence 3444 6999999997765 578999999999999999999988665431 1235 89999999999999 44566
Q ss_pred Hhh
Q 004358 88 KLL 90 (759)
Q Consensus 88 ~~l 90 (759)
..+
T Consensus 104 ~~~ 106 (216)
T 3b6e_A 104 QPF 106 (216)
T ss_dssp HHH
T ss_pred HHH
Confidence 664
No 51
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.24 E-value=6.9e-11 Score=132.07 Aligned_cols=118 Identities=14% Similarity=0.052 Sum_probs=76.3
Q ss_pred cCCcEEEEecCHHHHHHHHHHHhhcccHHHHhcCceEEEeCCCchhHHHHHHHHHHhccCCCCeEEEEeecCcccccccc
Q 004358 531 VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDF 610 (759)
Q Consensus 531 ~~gg~lv~f~Sy~~l~~~~~~~~~~~~~~~l~~~k~if~E~~~~~~~~~~l~~f~~~~~~~~~aiL~gv~~G~~~EGiDf 610 (759)
.++.+|||++|....+.+++.+...++ +...+.+ + .....++.|++ |+-.||+|+. -+.+|||+
T Consensus 187 ~~~~~lVF~~s~~~a~~l~~~L~~~g~-------~~~~lh~-~--~~~~~~~~f~~----g~~~vLVaT~--v~~~GiDi 250 (451)
T 2jlq_A 187 YQGKTVWFVPSIKAGNDIANCLRKSGK-------RVIQLSR-K--TFDTEYPKTKL----TDWDFVVTTD--ISEMGANF 250 (451)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTC-------CEEEECT-T--THHHHGGGGGS----SCCSEEEECG--GGGSSCCC
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHcCC-------eEEECCH-H--HHHHHHHhhcc----CCceEEEECC--HHHhCcCC
Confidence 478999999999999999999876532 2222222 2 23456666654 6778999884 89999999
Q ss_pred CCCCceEEEEEccCCCCcCCHHHHHHHHHHHHhcCCCcchhh----HHHHHHHHHHhcccccccCCCeeEEEEee
Q 004358 611 DRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFL----TFDALRQAAQCVGRVIRSKADYGMMIFAD 681 (759)
Q Consensus 611 ~~~~~r~vii~glPfp~~~dp~v~ar~~~l~~~~~~~~~~~~----~~~a~~~~~QaiGR~IR~~~D~g~iillD 681 (759)
|+ +.||-.|+++.+..| +. ...... .|.......|.+||+=|...+.|..+++.
T Consensus 251 p~---~~VI~~~~~~~~~~d-------------~~-~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~ 308 (451)
T 2jlq_A 251 RA---GRVIDPRRCLKPVIL-------------TD-GPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFS 308 (451)
T ss_dssp CC---SEEEECCEEEEEEEE-------------CS-SSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEEC
T ss_pred CC---CEEEECCCccccccc-------------cc-ccceeeecccccCCHHHHHHhccccCCCCCCCccEEEEe
Confidence 98 888877755432111 00 000000 11224567799999999988555555554
No 52
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.22 E-value=3.4e-11 Score=138.04 Aligned_cols=73 Identities=19% Similarity=0.248 Sum_probs=62.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCC--CCcEEEEEccchhhHHHHHHHHHhh
Q 004358 13 PYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPE--NPVKLIYCTRTVHEMEKTLAELKLL 90 (759)
Q Consensus 13 Py~~~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~--~~~kvi~~T~T~~l~~Q~~~el~~l 90 (759)
||++ ||.|.+.+..+. +++++++.||||+|||++|++|++......+. +. +++|.+||.++..|+.++++++
T Consensus 2 ~~~~-~~~Q~~~i~~~~----~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~-~~lil~P~~~L~~q~~~~~~~~ 75 (555)
T 3tbk_A 2 PLKP-RNYQLELALPAK----KGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKG-KVVFFANQIPVYEQQATVFSRY 75 (555)
T ss_dssp CCCC-CHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCC-CEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCC-cHHHHHHHHHHh----CCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCC-EEEEEeCCHHHHHHHHHHHHHH
Confidence 6775 999999987664 67899999999999999999999887765431 45 8999999999999999999886
Q ss_pred h
Q 004358 91 H 91 (759)
Q Consensus 91 ~ 91 (759)
.
T Consensus 76 ~ 76 (555)
T 3tbk_A 76 F 76 (555)
T ss_dssp H
T ss_pred h
Confidence 4
No 53
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.20 E-value=4.5e-11 Score=137.15 Aligned_cols=74 Identities=18% Similarity=0.178 Sum_probs=60.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCC--CCcEEEEEccchhhHHHHHHHHHh
Q 004358 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPE--NPVKLIYCTRTVHEMEKTLAELKL 89 (759)
Q Consensus 12 FPy~~~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~--~~~kvi~~T~T~~l~~Q~~~el~~ 89 (759)
.|+++ ||.|.+.+..+. +++++++.||||+|||++|+.|++......+. +. +++|.+||.++..|+.+++++
T Consensus 4 ~~~~~-~~~Q~~~i~~~~----~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~-~~lil~P~~~L~~q~~~~~~~ 77 (556)
T 4a2p_A 4 ETKKA-RSYQIELAQPAI----NGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKA-KVVFLATKVPVYEQQKNVFKH 77 (556)
T ss_dssp ----C-CHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCC-CEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCC-CHHHHHHHHHHH----cCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCC-eEEEEeCCHHHHHHHHHHHHH
Confidence 46765 999999887664 57899999999999999999998887765432 45 899999999999999999988
Q ss_pred hh
Q 004358 90 LH 91 (759)
Q Consensus 90 l~ 91 (759)
+.
T Consensus 78 ~~ 79 (556)
T 4a2p_A 78 HF 79 (556)
T ss_dssp HH
T ss_pred Hh
Confidence 64
No 54
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.16 E-value=9.4e-10 Score=122.07 Aligned_cols=119 Identities=16% Similarity=0.104 Sum_probs=78.4
Q ss_pred cCCcEEEEecCHHHHHHHHHHHhhcccHHHHhcCceEEEeCCCchhHHHHHHHHHHhccCCCCeEEEEeecCcccccccc
Q 004358 531 VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDF 610 (759)
Q Consensus 531 ~~gg~lv~f~Sy~~l~~~~~~~~~~~~~~~l~~~k~if~E~~~~~~~~~~l~~f~~~~~~~~~aiL~gv~~G~~~EGiDf 610 (759)
.++.++||+||.+..+.+++.++..+ .+...+-++ ....+++.|++ |+-.||+|+. -+.+|||+
T Consensus 170 ~~~~~lVF~~~~~~~~~l~~~L~~~~-------~~v~~lhg~---~r~~~~~~f~~----g~~~vLVaT~--v~e~GiDi 233 (431)
T 2v6i_A 170 FDGRTVWFVHSIKQGAEIGTCLQKAG-------KKVLYLNRK---TFESEYPKCKS----EKWDFVITTD--ISEMGANF 233 (431)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHTT-------CCEEEESTT---THHHHTTHHHH----SCCSEEEECG--GGGTSCCC
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHcC-------CeEEEeCCc---cHHHHHHhhcC----CCCeEEEECc--hHHcCccc
Confidence 47899999999999999999887642 233333332 45677889987 5778999884 89999999
Q ss_pred CCCCceEEEEEccCCCCcCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhcccccccCCCeeEEEEee
Q 004358 611 DRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMIFAD 681 (759)
Q Consensus 611 ~~~~~r~vii~glPfp~~~dp~v~ar~~~l~~~~~~~~~~~~~~~a~~~~~QaiGR~IR~~~D~g~iillD 681 (759)
| ...||..|.++.+.-| +...- -.+-.+.....+.|.+||+=|....-|++++++
T Consensus 234 p---~~~VI~~g~~~~~v~d----------~~~~v---i~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 234 K---ADRVIDPRKTIKPILL----------DGRVS---MQGPIAITPASAAQRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp C---CSEEEECCEEEEEEEE----------TTEEE---EEEEEECCHHHHHHHHTTSSCCTTCCCCEEEEC
T ss_pred C---CcEEEecCccccceec----------cccee---ecccccCCHHHHHHhhhccCCCCCCCCeEEEEc
Confidence 7 5677777765532211 00000 000111234566899999999876556666654
No 55
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.16 E-value=1.1e-10 Score=138.09 Aligned_cols=77 Identities=16% Similarity=0.179 Sum_probs=63.7
Q ss_pred eeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCC--CCcEEEEEccchhhHHHHHHHH
Q 004358 10 VYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPE--NPVKLIYCTRTVHEMEKTLAEL 87 (759)
Q Consensus 10 v~FPy~~~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~--~~~kvi~~T~T~~l~~Q~~~el 87 (759)
-.|+|..|||.|.+.+..+. +++++++.||||+|||++|+.|++......+. +. +++|.+||.++..|..+++
T Consensus 7 ~~~g~~~lr~~Q~~~i~~~l----~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~-~~lvl~Pt~~L~~Q~~~~~ 81 (696)
T 2ykg_A 7 NLYSPFKPRNYQLELALPAM----KGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKG-KVVFFANQIPVYEQNKSVF 81 (696)
T ss_dssp CTTC--CCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCC-CEEEECSSHHHHHHHHHHH
T ss_pred cccCCCCccHHHHHHHHHHH----cCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCC-eEEEEECCHHHHHHHHHHH
Confidence 35788888999999997664 57899999999999999999999877665432 25 8999999999999999999
Q ss_pred Hhhh
Q 004358 88 KLLH 91 (759)
Q Consensus 88 ~~l~ 91 (759)
+++.
T Consensus 82 ~~~~ 85 (696)
T 2ykg_A 82 SKYF 85 (696)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 8864
No 56
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.14 E-value=9.8e-10 Score=126.94 Aligned_cols=121 Identities=14% Similarity=0.013 Sum_probs=79.4
Q ss_pred cCCcEEEEecCHHHHHHHHHHHhhcccHHHHhcCceEEEeCCCchhHHHHHHHHHHhccCCCCeEEEEeecCcccccccc
Q 004358 531 VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDF 610 (759)
Q Consensus 531 ~~gg~lv~f~Sy~~l~~~~~~~~~~~~~~~l~~~k~if~E~~~~~~~~~~l~~f~~~~~~~~~aiL~gv~~G~~~EGiDf 610 (759)
.++.+|||++|.+..+.+++.+...++ +...+.+ ..+...++.|++ ++-.||+|+. -+.+|||+
T Consensus 354 ~~~~~LVF~~s~~~a~~l~~~L~~~g~-------~v~~lhg---~~R~~~l~~F~~----g~~~VLVaTd--v~~rGiDi 417 (618)
T 2whx_A 354 YQGKTVWFVPSIKAGNDIANCLRKSGK-------RVIQLSR---KTFDTEYPKTKL----TDWDFVVTTD--ISEMGANF 417 (618)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHHTTC-------CEEEECT---TTHHHHTTHHHH----SCCSEEEECG--GGGTTCCC
T ss_pred CCCCEEEEECChhHHHHHHHHHHHcCC-------cEEEECh---HHHHHHHHhhcC----CCcEEEEECc--HHHcCccc
Confidence 478999999999999999999876532 2233333 345678889987 5777999884 89999999
Q ss_pred CCCCceEEEEEccCCCCcC-CHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhcccccccCCCeeEEEEee
Q 004358 611 DRHYGRLVIMFGVPFQYTL-SKILLARLEYLRDTFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMIFAD 681 (759)
Q Consensus 611 ~~~~~r~vii~glPfp~~~-dp~v~ar~~~l~~~~~~~~~~~~~~~a~~~~~QaiGR~IR~~~D~g~iillD 681 (759)
+ ++.||..|+++-+-. +. .+... .-.|-.|.......|.+||.=|.....|..+++.
T Consensus 418 ~---v~~VId~g~~~~P~~~~~--------~~~~~---~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~ 475 (618)
T 2whx_A 418 R---AGRVIDPRRCLKPVILTD--------GPERV---ILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFS 475 (618)
T ss_dssp C---CSEEEECCEEEEEEEECS--------SSCEE---EEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEEC
T ss_pred C---ceEEEECcceecceeccc--------CCCce---EEcccccCCHHHHHHhccccCCCCCCCCeEEEEc
Confidence 4 799999998654210 00 00000 0011112234566899999999966455444443
No 57
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.13 E-value=1.3e-10 Score=139.41 Aligned_cols=74 Identities=18% Similarity=0.196 Sum_probs=60.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCC--CCcEEEEEccchhhHHHHHHHHHhh
Q 004358 13 PYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPE--NPVKLIYCTRTVHEMEKTLAELKLL 90 (759)
Q Consensus 13 Py~~~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~--~~~kvi~~T~T~~l~~Q~~~el~~l 90 (759)
++..|||.|.+.+..+. +++++++.||||+|||++|+.|++......+. ++ +++|.+||.++..|+.++++++
T Consensus 245 g~~~l~~~Q~~~i~~~l----~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~-~~Lvl~Pt~~L~~Q~~~~~~~~ 319 (797)
T 4a2q_A 245 ETKKARSYQIELAQPAI----NGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKA-KVVFLATKVPVYEQQKNVFKHH 319 (797)
T ss_dssp ---CCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCC-CEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHH----hCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCC-eEEEEeCCHHHHHHHHHHHHHh
Confidence 36667999999887664 57899999999999999999999887765431 45 8999999999999999999886
Q ss_pred h
Q 004358 91 H 91 (759)
Q Consensus 91 ~ 91 (759)
.
T Consensus 320 ~ 320 (797)
T 4a2q_A 320 F 320 (797)
T ss_dssp H
T ss_pred c
Confidence 4
No 58
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.12 E-value=2.3e-10 Score=134.88 Aligned_cols=76 Identities=14% Similarity=0.109 Sum_probs=67.3
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCC--cEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccchhhHHHHHHHHH
Q 004358 11 YFPYDNIYPEQYSYMLELKRALDAKG--HCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELK 88 (759)
Q Consensus 11 ~FPy~~~r~~Q~~~~~~v~~al~~~~--~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~ 88 (759)
.+||+ ++|.|.+.+..|.+.+..+. +.++.||||+|||++|+.|++..... +. +++|.+||.++..|..++++
T Consensus 364 ~lpf~-lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~---g~-qvlvlaPtr~La~Q~~~~l~ 438 (780)
T 1gm5_A 364 SLPFK-LTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA---GF-QTAFMVPTSILAIQHYRRTV 438 (780)
T ss_dssp HSSSC-CCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH---TS-CEEEECSCHHHHHHHHHHHH
T ss_pred hCCCC-CCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc---CC-eEEEEeCcHHHHHHHHHHHH
Confidence 68995 59999999999999988764 89999999999999999999877653 45 89999999999999999988
Q ss_pred hhh
Q 004358 89 LLH 91 (759)
Q Consensus 89 ~l~ 91 (759)
++.
T Consensus 439 ~~~ 441 (780)
T 1gm5_A 439 ESF 441 (780)
T ss_dssp HHH
T ss_pred HHh
Confidence 764
No 59
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.10 E-value=5.9e-11 Score=133.86 Aligned_cols=77 Identities=16% Similarity=0.124 Sum_probs=62.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccchhhHHHHHHHHHhhh
Q 004358 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLH 91 (759)
Q Consensus 12 FPy~~~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~l~ 91 (759)
+.|..|+|.|.+.+..+... .++++++.||||+|||++|++|++........++ +++|.+||.++..|+.+.++.+.
T Consensus 110 ~g~~~p~~~Q~~ai~~il~~--~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~-~~lil~Pt~~La~Q~~~~~~~~~ 186 (479)
T 3fmp_B 110 MGFNRPSKIQENALPLMLAE--PPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYP-QCLCLSPTYELALQTGKVIEQMG 186 (479)
T ss_dssp TTCCSCCHHHHHHHHHHTSB--SCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSC-CEEEECSSHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHcC--CCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCC-cEEEEeChHHHHHHHHHHHHHHH
Confidence 57787899999998766531 2389999999999999999999887655443344 89999999999999988887764
No 60
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.05 E-value=2.4e-10 Score=138.82 Aligned_cols=73 Identities=18% Similarity=0.200 Sum_probs=59.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCC--CCcEEEEEccchhhHHHHHHHHHhhh
Q 004358 14 YDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPE--NPVKLIYCTRTVHEMEKTLAELKLLH 91 (759)
Q Consensus 14 y~~~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~--~~~kvi~~T~T~~l~~Q~~~el~~l~ 91 (759)
+..|||.|.+.+..+. +++++++.||||+|||++|+.|++......+. +. +++|.+||.++..|+.++++++.
T Consensus 246 ~~~~r~~Q~~ai~~il----~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~-~vLvl~Pt~~L~~Q~~~~~~~~~ 320 (936)
T 4a2w_A 246 TKKARSYQIELAQPAI----NGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKA-KVVFLATKVPVYEQQKNVFKHHF 320 (936)
T ss_dssp --CCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCC-CEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH----cCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCC-eEEEEeCCHHHHHHHHHHHHHHh
Confidence 5567999999887664 57899999999999999999998766544321 45 89999999999999999998864
No 61
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.03 E-value=1.3e-10 Score=137.56 Aligned_cols=73 Identities=21% Similarity=0.200 Sum_probs=59.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCC---CCCcEEEEEccchhhHHHH-HHHHH
Q 004358 13 PYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKP---ENPVKLIYCTRTVHEMEKT-LAELK 88 (759)
Q Consensus 13 Py~~~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~---~~~~kvi~~T~T~~l~~Q~-~~el~ 88 (759)
+++ +||.|.+.+..+. +++++++.||||+|||++|+.|++......+ .+. +++|.+||+++..|+ .++++
T Consensus 5 ~~~-l~~~Q~~~i~~il----~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~-~vlvl~P~~~L~~Q~~~~~l~ 78 (699)
T 4gl2_A 5 MLQ-LRPYQMEVAQPAL----EGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPG-KVIVLVNKVLLVEQLFRKEFQ 78 (699)
T ss_dssp --C-CCHHHHHHHHHHH----SSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCC-CBCCEESCSHHHHHHHHHTHH
T ss_pred CCC-ccHHHHHHHHHHH----hCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCC-eEEEEECCHHHHHHHHHHHHH
Confidence 455 4999999987766 4789999999999999999999887654321 125 899999999999999 89998
Q ss_pred hhh
Q 004358 89 LLH 91 (759)
Q Consensus 89 ~l~ 91 (759)
++.
T Consensus 79 ~~~ 81 (699)
T 4gl2_A 79 PFL 81 (699)
T ss_dssp HHH
T ss_pred HHc
Confidence 863
No 62
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.02 E-value=8.3e-09 Score=122.23 Aligned_cols=143 Identities=10% Similarity=0.042 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHhhcc-cCCcEEEEecCHHHHHHHHHHHhhcccHHHH------hcCceEEEeCCC-chhHHHHHHHHHH
Q 004358 515 GVARNYGKLLVEMVSI-VPDGIVCFFVSYSYMDEIIATWNDSGILKEI------MQHKLVFIETQD-VVETTLALDNYRK 586 (759)
Q Consensus 515 ~~~~~~~~~l~~~~~~-~~gg~lv~f~Sy~~l~~~~~~~~~~~~~~~l------~~~k~if~E~~~-~~~~~~~l~~f~~ 586 (759)
.+.......+.++... .+|.+|||+++....+.+.+.+.+.. ..+ ........-+.- ..+...+++.|+.
T Consensus 285 ~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~--~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~ 362 (773)
T 2xau_A 285 DYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEG--DQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPE 362 (773)
T ss_dssp CHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHH--HHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCC
T ss_pred hHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHH--HhhcccccCCCeEEEEeCCCCCHHHHHHHHhhccc
Confidence 3455555556665543 57899999999999999999886410 011 111122222211 1223334444430
Q ss_pred h-ccCCCCeEEEEeecCccccccccCCCCceEEEEEccCCCCcCCHHHHHHHHHHHHhcCCCcchh--hHHHHHHHHHHh
Q 004358 587 A-CDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDF--LTFDALRQAAQC 663 (759)
Q Consensus 587 ~-~~~~~~aiL~gv~~G~~~EGiDf~~~~~r~vii~glPfp~~~dp~v~ar~~~l~~~~~~~~~~~--~~~~a~~~~~Qa 663 (759)
. -..|...||+|+ ..+..|||+++ .+.||-.|+|-....||.. +.+. ..+.......|.
T Consensus 363 ~~~~~g~~kVlVAT--~iae~GidIp~--v~~VId~g~~k~~~yd~~~--------------g~~~L~~~p~S~~s~~QR 424 (773)
T 2xau_A 363 SHNGRPGRKVVIST--NIAETSLTIDG--IVYVVDPGFSKQKVYNPRI--------------RVESLLVSPISKASAQQR 424 (773)
T ss_dssp CSSSSCCEEEEEEC--THHHHTCCCTT--EEEEEECSEEEEEEEETTT--------------TEEEEEEEECCHHHHHHH
T ss_pred ccCCCCceEEEEeC--cHHHhCcCcCC--eEEEEeCCCccceeecccc--------------CccccccccCCHHHHHhh
Confidence 0 003556788877 48999999995 7789988886422222210 0010 001223556799
Q ss_pred cccccccCCCeeEEEE
Q 004358 664 VGRVIRSKADYGMMIF 679 (759)
Q Consensus 664 iGR~IR~~~D~g~iil 679 (759)
+||.=|. ..|..+.
T Consensus 425 ~GRaGR~--~~G~~~~ 438 (773)
T 2xau_A 425 AGRAGRT--RPGKCFR 438 (773)
T ss_dssp HHGGGSS--SSEEEEE
T ss_pred ccccCCC--CCCEEEE
Confidence 9999997 4565544
No 63
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.01 E-value=1e-09 Score=114.57 Aligned_cols=69 Identities=14% Similarity=0.116 Sum_probs=56.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccchhhHHHHHHHHHhh
Q 004358 14 YDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (759)
Q Consensus 14 y~~~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~l 90 (759)
++ +||.|.+.+..+.+ ++..++.||||+|||++++.++....... .. +++|.++|.++.+|..+++.+.
T Consensus 112 ~~-l~~~Q~~ai~~~l~----~~~~ll~~~tGsGKT~~~~~~~~~~~~~~--~~-~~lil~Pt~~L~~q~~~~l~~~ 180 (282)
T 1rif_A 112 IE-PHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLENY--EG-KILIIVPTTALTTQMADDFVDY 180 (282)
T ss_dssp CC-CCHHHHHHHHHHHH----HSEEEECCCTTSCHHHHHHHHHHHHHHHC--SS-EEEEECSSHHHHHHHHHHHHHH
T ss_pred cC-ccHHHHHHHHHHHh----cCCeEEEcCCCCCcHHHHHHHHHHHHHcC--CC-eEEEEECCHHHHHHHHHHHHHh
Confidence 44 59999999877654 36778899999999999988877665432 34 8999999999999999998875
No 64
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=98.96 E-value=1.9e-09 Score=109.58 Aligned_cols=67 Identities=16% Similarity=0.142 Sum_probs=53.5
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccchhhHHHHHHHHHh
Q 004358 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKL 89 (759)
Q Consensus 11 ~FPy~~~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~ 89 (759)
.|+++ +||.|.+.+..+. +++.+++.+|||+|||++++.++... +. +++|.++|.++..|+.+++.+
T Consensus 89 ~~~~~-l~~~Q~~ai~~~~----~~~~~ll~~~tG~GKT~~a~~~~~~~------~~-~~liv~P~~~L~~q~~~~~~~ 155 (237)
T 2fz4_A 89 DAEIS-LRDYQEKALERWL----VDKRGCIVLPTGSGKTHVAMAAINEL------ST-PTLIVVPTLALAEQWKERLGI 155 (237)
T ss_dssp CCCCC-CCHHHHHHHHHHT----TTSEEEEEESSSTTHHHHHHHHHHHS------CS-CEEEEESSHHHHHHHHHHHGG
T ss_pred cCCCC-cCHHHHHHHHHHH----hCCCEEEEeCCCCCHHHHHHHHHHHc------CC-CEEEEeCCHHHHHHHHHHHHh
Confidence 34455 5999999887644 45679999999999999988765431 35 899999999999999888776
No 65
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=98.93 E-value=2.1e-09 Score=120.90 Aligned_cols=68 Identities=16% Similarity=0.140 Sum_probs=56.4
Q ss_pred eeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccchhhHHHHHHHHHh
Q 004358 10 VYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKL 89 (759)
Q Consensus 10 v~FPy~~~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~ 89 (759)
..||++ +||.|.+.+..+. +++.+++.+|||+|||++++.++... +. +++|.+||.++..|+.+++.+
T Consensus 88 ~~~~~~-l~~~Q~~ai~~i~----~~~~~ll~~~TGsGKT~~~l~~i~~~------~~-~~Lvl~P~~~L~~Q~~~~~~~ 155 (472)
T 2fwr_A 88 FDAEIS-LRDYQEKALERWL----VDKRGCIVLPTGSGKTHVAMAAINEL------ST-PTLIVVPTLALAEQWKERLGI 155 (472)
T ss_dssp CCCCCC-BCHHHHHHHHHHT----TTTEEEEECCTTSCHHHHHHHHHHHH------CS-CEEEEESSHHHHHHHHHHGGG
T ss_pred ccCCCC-cCHHHHHHHHHHH----hcCCEEEEeCCCCCHHHHHHHHHHHc------CC-CEEEEECCHHHHHHHHHHHHh
Confidence 346776 4999999987654 45679999999999999999886543 35 899999999999999998776
No 66
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=98.92 E-value=1.9e-07 Score=108.48 Aligned_cols=70 Identities=17% Similarity=0.085 Sum_probs=55.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccchhhHHHHHHHHHhhh
Q 004358 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLH 91 (759)
Q Consensus 12 FPy~~~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~l~ 91 (759)
.++. |+|.|..-+-.+. +|+ ++||+||+|||+++++|++..+. .++ .|.|.|+|..|..|..+++..+.
T Consensus 108 lG~r-P~~VQ~~~ip~Ll----~G~--Iaem~TGeGKTLa~~LP~~l~aL---~g~-~v~VvTpTreLA~Qdae~m~~l~ 176 (922)
T 1nkt_A 108 LDQR-PFDVQVMGAAALH----LGN--VAEMKTGEGKTLTCVLPAYLNAL---AGN-GVHIVTVNDYLAKRDSEWMGRVH 176 (922)
T ss_dssp HSCC-CCHHHHHHHHHHH----TTE--EEECCTTSCHHHHTHHHHHHHHT---TTS-CEEEEESSHHHHHHHHHHHHHHH
T ss_pred cCCC-CCHHHHHHHHhHh----cCC--EEEecCCCccHHHHHHHHHHHHH---hCC-CeEEEeCCHHHHHHHHHHHHHHH
Confidence 3564 4899998775443 454 99999999999999999875443 245 89999999999999999888875
Q ss_pred h
Q 004358 92 N 92 (759)
Q Consensus 92 ~ 92 (759)
.
T Consensus 177 ~ 177 (922)
T 1nkt_A 177 R 177 (922)
T ss_dssp H
T ss_pred h
Confidence 4
No 67
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=98.73 E-value=1e-06 Score=100.39 Aligned_cols=152 Identities=11% Similarity=0.099 Sum_probs=87.1
Q ss_pred ccccHHHhhccCEEEEecCCCCCCc-chhhhhCCCCcccccceeeccCCceeeEEeecCCCCCccee-ccccCCChHHHH
Q 004358 441 SLAVKPVFDRFQSVVITSGTLSPID-LYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVST-KFDMRSDPGVAR 518 (759)
Q Consensus 441 s~~~~~l~~~~~svIltSgTL~p~~-~f~~~lg~~~~~~~~~~~~~~~~~~~~~ii~~g~~~~~l~s-~f~~r~~~~~~~ 518 (759)
+..++.+|..+..+..||||+.+.. .|.+..|++.+. +|.+. |. ....- ..-+....+-..
T Consensus 399 ~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~-------IPtnk---------p~-~R~d~~d~vy~t~~eK~~ 461 (822)
T 3jux_A 399 TITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGMEVVV-------IPTHK---------PM-IRKDHDDLVFRTQKEKYE 461 (822)
T ss_dssp EECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCCCEEE-------CCCSS---------CC-CCEECCCEEESSHHHHHH
T ss_pred HHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCCeEEE-------ECCCC---------Cc-ceeecCcEEEecHHHHHH
Confidence 4566899999999999999998753 566666665221 11110 00 00000 001122233334
Q ss_pred HHHHHHHHhhcccCCcEEEEecCHHHHHHHHHHHhhcccHHHHhcCceEEEeCCCchhHHHHHHHHHHhccCCCCeEEEE
Q 004358 519 NYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFS 598 (759)
Q Consensus 519 ~~~~~l~~~~~~~~gg~lv~f~Sy~~l~~~~~~~~~~~~~~~l~~~k~if~E~~~~~~~~~~l~~f~~~~~~~~~aiL~g 598 (759)
.+.+.|.+.. ..+..+|||++|....+.+...+...|+ +....-+ +....+..+-.+. ..+|+|++|
T Consensus 462 al~~~I~~~~-~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi-------~~~vLhg-kq~~rE~~ii~~a----g~~g~VtVA 528 (822)
T 3jux_A 462 KIVEEIEKRY-KKGQPVLVGTTSIEKSELLSSMLKKKGI-------PHQVLNA-KYHEKEAEIVAKA----GQKGMVTIA 528 (822)
T ss_dssp HHHHHHHHHH-HHTCCEEEEESSHHHHHHHHHHHHTTTC-------CCEEECS-CHHHHHHHHHHHH----HSTTCEEEE
T ss_pred HHHHHHHHHh-hCCCCEEEEECCHHHHHHHHHHHHHCCC-------CEEEeeC-CchHHHHHHHHhC----CCCCeEEEE
Confidence 5545444432 2466899999999999999999987654 1122222 2223333222222 136789998
Q ss_pred eecCccccccccC-CC-----CceEEEEEccC
Q 004358 599 VARGKVAEGIDFD-RH-----YGRLVIMFGVP 624 (759)
Q Consensus 599 v~~G~~~EGiDf~-~~-----~~r~vii~glP 624 (759)
+. -...|+|++ |. .+-.||-.-+|
T Consensus 529 Td--mAgRGtDI~lg~~V~~~GglhVInte~P 558 (822)
T 3jux_A 529 TN--MAGRGTDIKLGPGVAELGGLCIIGTERH 558 (822)
T ss_dssp ET--TTTTTCCCCCCTTTTTTTSCEEEESSCC
T ss_pred cc--hhhCCcCccCCcchhhcCCCEEEecCCC
Confidence 84 789999997 22 23356666665
No 68
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=98.73 E-value=3.9e-08 Score=111.33 Aligned_cols=71 Identities=14% Similarity=0.050 Sum_probs=56.6
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccchhhHHHHHHHHHhh
Q 004358 17 IYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (759)
Q Consensus 17 ~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~l 90 (759)
+||.|.+.+..+......+..+++.+|||+|||+..+..+... ....... +++|.+|+ ++..|..+|+++.
T Consensus 38 L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~-~~~~~~~-~~LIv~P~-~l~~qw~~e~~~~ 108 (500)
T 1z63_A 38 LRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDA-KKENELT-PSLVICPL-SVLKNWEEELSKF 108 (500)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHH-HHTTCCS-SEEEEECS-TTHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHH-HhcCCCC-CEEEEccH-HHHHHHHHHHHHH
Confidence 6999999998887777788899999999999999987654433 3333345 78888895 5889999999875
No 69
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=98.69 E-value=3.6e-08 Score=119.35 Aligned_cols=72 Identities=14% Similarity=0.099 Sum_probs=58.8
Q ss_pred CCHHHHHHHHHHHHHHHhC----------CcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccchhhHHHHHHH
Q 004358 17 IYPEQYSYMLELKRALDAK----------GHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAE 86 (759)
Q Consensus 17 ~r~~Q~~~~~~v~~al~~~----------~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~~l~~Q~~~e 86 (759)
|||.|.+.+..+.+++..+ +.+++.+|||||||+++ ++++.++...+... +|+|.|+|..|..|+.++
T Consensus 272 ~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~~~~~-rvLvlvpr~eL~~Q~~~~ 349 (1038)
T 2w00_A 272 MRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATELDFID-KVFFVVDRKDLDYQTMKE 349 (1038)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTCTTCC-EEEEEECGGGCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhcCCCc-eEEEEeCcHHHHHHHHHH
Confidence 6999999999999988643 57999999999999998 44455544333335 999999999999999998
Q ss_pred HHhh
Q 004358 87 LKLL 90 (759)
Q Consensus 87 l~~l 90 (759)
+..+
T Consensus 350 f~~f 353 (1038)
T 2w00_A 350 YQRF 353 (1038)
T ss_dssp HHTT
T ss_pred HHHh
Confidence 8764
No 70
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=98.50 E-value=1.3e-07 Score=109.71 Aligned_cols=66 Identities=18% Similarity=0.103 Sum_probs=53.8
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccchhhHHHHHHHHHhhhh
Q 004358 17 IYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLHN 92 (759)
Q Consensus 17 ~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~l~~ 92 (759)
|+|.|..-+-.+. +|+ +.||+||+|||+++++|++..+. .+. +++|.|+|..|..|..+++..+..
T Consensus 75 p~~VQ~~~i~~ll----~G~--Iaem~TGsGKTlaf~LP~l~~~l---~g~-~vlVltPTreLA~Q~~e~~~~l~~ 140 (853)
T 2fsf_A 75 HFDVQLLGGMVLN----ERC--IAEMRTGEGKTLTATLPAYLNAL---TGK-GVHVVTVNDYLAQRDAENNRPLFE 140 (853)
T ss_dssp CCHHHHHHHHHHH----SSE--EEECCTTSCHHHHHHHHHHHHHT---TSS-CCEEEESSHHHHHHHHHHHHHHHH
T ss_pred CChHHHhhccccc----CCe--eeeecCCchHHHHHHHHHHHHHH---cCC-cEEEEcCCHHHHHHHHHHHHHHHH
Confidence 4899988775443 455 99999999999999999875432 245 899999999999999998888754
No 71
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=98.50 E-value=2.3e-07 Score=93.86 Aligned_cols=69 Identities=9% Similarity=0.128 Sum_probs=52.9
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCC-CCcEEEEEccchhhHHHHHHHHHh
Q 004358 17 IYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPE-NPVKLIYCTRTVHEMEKTLAELKL 89 (759)
Q Consensus 17 ~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~-~~~kvi~~T~T~~l~~Q~~~el~~ 89 (759)
.++.|.+.+..+ .+++.+++.||||+|||.++..+++......+. ...++++..+|..+..|+.+.+..
T Consensus 62 ~~~~q~~~i~~i----~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~ 131 (235)
T 3llm_A 62 VKKFESEILEAI----SQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAF 131 (235)
T ss_dssp GGGGHHHHHHHH----HHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH----hcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHH
Confidence 478888877555 578999999999999999888887765443321 123899999999999998776654
No 72
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=98.50 E-value=2e-07 Score=108.34 Aligned_cols=70 Identities=16% Similarity=0.076 Sum_probs=56.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccchhhHHHHHHHHHhhh
Q 004358 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLH 91 (759)
Q Consensus 12 FPy~~~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~l~ 91 (759)
..|. |+|.|..-+-.+. +|+ +.||+||+|||+++++|++..+. .++ .+.|.|+|..|..|..+++..+.
T Consensus 80 lG~~-pt~VQ~~~ip~ll----~G~--Iaea~TGeGKTlaf~LP~~l~aL---~g~-~vlVltptreLA~qd~e~~~~l~ 148 (844)
T 1tf5_A 80 TGMF-PFKVQLMGGVALH----DGN--IAEMKTGEGKTLTSTLPVYLNAL---TGK-GVHVVTVNEYLASRDAEQMGKIF 148 (844)
T ss_dssp HSCC-CCHHHHHHHHHHH----TTS--EEECCTTSCHHHHHHHHHHHHHT---TSS-CEEEEESSHHHHHHHHHHHHHHH
T ss_pred cCCC-CcHHHHHhhHHHh----CCC--EEEccCCcHHHHHHHHHHHHHHH---cCC-CEEEEeCCHHHHHHHHHHHHHHH
Confidence 4564 5999999876554 555 99999999999999999875432 255 89999999999999999888875
Q ss_pred h
Q 004358 92 N 92 (759)
Q Consensus 92 ~ 92 (759)
.
T Consensus 149 ~ 149 (844)
T 1tf5_A 149 E 149 (844)
T ss_dssp H
T ss_pred h
Confidence 4
No 73
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=98.49 E-value=3.1e-07 Score=109.85 Aligned_cols=73 Identities=15% Similarity=0.160 Sum_probs=58.2
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccchhhHHHHHHHHHhh
Q 004358 16 NIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (759)
Q Consensus 16 ~~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~l 90 (759)
.+||.|++.+..+.....++..+++-.+||.|||+..+..+..........+ +++|.+| .+++.|..+|+.+.
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~-~~LIV~P-~sll~qW~~E~~~~ 308 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNG-PHIIVVP-LSTMPAWLDTFEKW 308 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCS-CEEEECC-TTTHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCC-CEEEEEC-chHHHHHHHHHHHH
Confidence 4699999999999989999999999999999999987765443322222345 6888888 66788999999886
No 74
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=98.48 E-value=3.1e-07 Score=111.73 Aligned_cols=100 Identities=15% Similarity=0.234 Sum_probs=73.1
Q ss_pred ccCCcEEEEecCHHHHHHHHHHHhhc-ccHHHHhcCceEEEeCC-CchhHHHHHHHHHHhccCCC--CeEEEEeecCccc
Q 004358 530 IVPDGIVCFFVSYSYMDEIIATWNDS-GILKEIMQHKLVFIETQ-DVVETTLALDNYRKACDCGR--GAVFFSVARGKVA 605 (759)
Q Consensus 530 ~~~gg~lv~f~Sy~~l~~~~~~~~~~-~~~~~l~~~k~if~E~~-~~~~~~~~l~~f~~~~~~~~--~aiL~gv~~G~~~ 605 (759)
..++.++||+++....+.+...+... | .+...+-+. ....+..+++.|+. ++ -.||+++ ...+
T Consensus 501 ~~~~k~iVF~~~~~~~~~l~~~L~~~~g-------~~~~~lhG~~~~~~R~~~l~~F~~----g~~~~~vLvaT--~v~~ 567 (968)
T 3dmq_A 501 HRSQKVLVICAKAATALQLEQVLREREG-------IRAAVFHEGMSIIERDRAAAWFAE----EDTGAQVLLCS--EIGS 567 (968)
T ss_dssp TSSSCCCEECSSTHHHHHHHHHHHTTTC-------CCEEEECTTSCTTHHHHHHHHHHS----TTSSCEEEECS--CCTT
T ss_pred CCCCCEEEEeCcHHHHHHHHHHHHHHcC-------CcEEEEeCCCCHHHHHHHHHHHhC----CCCcccEEEec--chhh
Confidence 45689999999999999999988742 2 233444443 23457888999987 44 5688766 5899
Q ss_pred cccccCCCCceEEEEEccCCCCcCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhcccccccCCCe
Q 004358 606 EGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQAAQCVGRVIRSKADY 674 (759)
Q Consensus 606 EGiDf~~~~~r~vii~glPfp~~~dp~v~ar~~~l~~~~~~~~~~~~~~~a~~~~~QaiGR~IR~~~D~ 674 (759)
+|+|+++ +..||+..+|+- | ....|++||+-|.....
T Consensus 568 ~GlDl~~--~~~VI~~d~p~~----~--------------------------~~~~Q~~GR~~R~Gq~~ 604 (968)
T 3dmq_A 568 EGRNFQF--ASHMVMFDLPFN----P--------------------------DLLEQRIGRLDRIGQAH 604 (968)
T ss_dssp CSSCCTT--CCEEECSSCCSS----H--------------------------HHHHHHHHTTSCSSSCS
T ss_pred cCCCccc--CcEEEEecCCCC----H--------------------------HHHHHHhhccccCCCCc
Confidence 9999997 788999888752 1 12359999999976554
No 75
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=98.41 E-value=5.9e-07 Score=104.08 Aligned_cols=70 Identities=16% Similarity=0.053 Sum_probs=56.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccchhhHHHHHHHHHhhh
Q 004358 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLH 91 (759)
Q Consensus 12 FPy~~~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~l~ 91 (759)
.+|. |+|.|...+-.+ -+|. +.||.||+|||+++++|++..+. .+. .+.|.|+|..|..|..+.+..+.
T Consensus 76 lG~~-Pt~VQ~~~ip~L----lqG~--IaeakTGeGKTLvf~Lp~~L~aL---~G~-qv~VvTPTreLA~Qdae~m~~l~ 144 (997)
T 2ipc_A 76 LGMR-HFDVQLIGGAVL----HEGK--IAEMKTGEGKTLVATLAVALNAL---TGK-GVHVVTVNDYLARRDAEWMGPVY 144 (997)
T ss_dssp TCCC-CCHHHHHHHHHH----HTTS--EEECCSTHHHHHHHHHHHHHHHT---TCS-CCEEEESSHHHHHHHHHHHHHHH
T ss_pred hCCC-CcHHHHhhcccc----cCCc--eeeccCCCchHHHHHHHHHHHHH---hCC-CEEEEeCCHHHHHHHHHHHHHHH
Confidence 4565 499999887544 3555 99999999999999999864433 245 89999999999999999888875
Q ss_pred h
Q 004358 92 N 92 (759)
Q Consensus 92 ~ 92 (759)
.
T Consensus 145 ~ 145 (997)
T 2ipc_A 145 R 145 (997)
T ss_dssp H
T ss_pred H
Confidence 4
No 76
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=98.37 E-value=7.7e-07 Score=103.65 Aligned_cols=74 Identities=19% Similarity=0.231 Sum_probs=58.1
Q ss_pred CCCHHHHHHHHHHHHHHH-----hCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCC----CCcEEEEEccchhhHHHHHHH
Q 004358 16 NIYPEQYSYMLELKRALD-----AKGHCLLEMPTGTGKTIALLSLITSYVLSKPE----NPVKLIYCTRTVHEMEKTLAE 86 (759)
Q Consensus 16 ~~r~~Q~~~~~~v~~al~-----~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~----~~~kvi~~T~T~~l~~Q~~~e 86 (759)
.+||.|++.+..+.+.+. .+..+++-.+||+|||+..+..+.......+. .+ +++|.+++ +++.|..+|
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~-~~LiV~P~-sll~qW~~E 132 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEID-KVIVVSPS-SLVRNWYNE 132 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCS-CEEEEECH-HHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCC-cEEEEecH-HHHHHHHHH
Confidence 369999999999988874 45678999999999999988766555443321 23 68888887 788999999
Q ss_pred HHhhh
Q 004358 87 LKLLH 91 (759)
Q Consensus 87 l~~l~ 91 (759)
+.+..
T Consensus 133 ~~~~~ 137 (644)
T 1z3i_X 133 VGKWL 137 (644)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 99864
No 77
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.13 E-value=1.1e-05 Score=93.96 Aligned_cols=67 Identities=22% Similarity=0.346 Sum_probs=51.3
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccchhhHHHHHHHHHh
Q 004358 16 NIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKL 89 (759)
Q Consensus 16 ~~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~ 89 (759)
..-+.|++ +|..+|..+...+|.+|+|||||..... ++.++... +. +|++||+|+.-.+++++.|..
T Consensus 189 ~LN~~Q~~---AV~~al~~~~~~lI~GPPGTGKT~ti~~-~I~~l~~~--~~-~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 189 CLDTSQKE---AVLFALSQKELAIIHGPPGTGKTTTVVE-IILQAVKQ--GL-KVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp TCCHHHHH---HHHHHHHCSSEEEEECCTTSCHHHHHHH-HHHHHHHT--TC-CEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHH---HHHHHhcCCCceEEECCCCCCHHHHHHH-HHHHHHhC--CC-eEEEEcCchHHHHHHHHHHHh
Confidence 35789987 4556677778999999999999987543 34444433 46 899999999999999886654
No 78
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=97.89 E-value=4.6e-06 Score=95.87 Aligned_cols=54 Identities=17% Similarity=0.130 Sum_probs=44.1
Q ss_pred HHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccchhhHHHHHHHHHh
Q 004358 29 KRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKL 89 (759)
Q Consensus 29 ~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~ 89 (759)
..++.+++.+++.||||+|||.+++.|++. .+. +++|.+||..+..|+.+.+.+
T Consensus 226 ~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~------~g~-~vLVl~PTReLA~Qia~~l~~ 279 (666)
T 3o8b_A 226 PAVPQSFQVAHLHAPTGSGKSTKVPAAYAA------QGY-KVLVLNPSVAATLGFGAYMSK 279 (666)
T ss_dssp CCCCSSCEEEEEECCTTSCTTTHHHHHHHH------TTC-CEEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHcCCeEEEEeCCchhHHHHHHHHHHH------CCC-eEEEEcchHHHHHHHHHHHHH
Confidence 355567789999999999999999988664 145 899999999999998775544
No 79
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.88 E-value=6.9e-05 Score=86.77 Aligned_cols=67 Identities=16% Similarity=0.275 Sum_probs=49.9
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccchhhHHHHHHHHHh
Q 004358 16 NIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKL 89 (759)
Q Consensus 16 ~~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~ 89 (759)
...+.|.+.+..+. .+...+|.+|+|||||..... .+.++... .+. +|+++++|+...+++.+.+..
T Consensus 180 ~ln~~Q~~av~~~l----~~~~~li~GppGTGKT~~~~~-~i~~l~~~-~~~-~ilv~a~tn~A~~~l~~~l~~ 246 (624)
T 2gk6_A 180 DLNHSQVYAVKTVL----QRPLSLIQGPPGTGKTVTSAT-IVYHLARQ-GNG-PVLVCAPSNIAVDQLTEKIHQ 246 (624)
T ss_dssp CCCHHHHHHHHHHH----TCSEEEEECCTTSCHHHHHHH-HHHHHHTS-SSC-CEEEEESSHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHh----cCCCeEEECCCCCCHHHHHHH-HHHHHHHc-CCC-eEEEEeCcHHHHHHHHHHHHh
Confidence 45789998876654 367899999999999986433 33333322 245 899999999999999887654
No 80
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=97.82 E-value=0.0002 Score=67.63 Aligned_cols=106 Identities=19% Similarity=0.291 Sum_probs=75.6
Q ss_pred cCCcEEEEecCHHHHHHHHHHHhhcccHHHHhcCceEEEeCC-CchhHHHHHHHHHHhccCCCCeEEEEeecCccccccc
Q 004358 531 VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQ-DVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGID 609 (759)
Q Consensus 531 ~~gg~lv~f~Sy~~l~~~~~~~~~~~~~~~l~~~k~if~E~~-~~~~~~~~l~~f~~~~~~~~~aiL~gv~~G~~~EGiD 609 (759)
.++.+|||+++....+.+.+.+...++ +...+-+. ...++...++.|+. ++-.||+++ ..+++|+|
T Consensus 34 ~~~~~lVF~~~~~~~~~l~~~L~~~~~-------~~~~~hg~~~~~~r~~~~~~f~~----g~~~vlv~T--~~~~~Gld 100 (163)
T 2hjv_A 34 NPDSCIIFCRTKEHVNQLTDELDDLGY-------PCDKIHGGMIQEDRFDVMNEFKR----GEYRYLVAT--DVAARGID 100 (163)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHTTC-------CEEEECTTSCHHHHHHHHHHHHT----TSCSEEEEC--GGGTTTCC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHcCC-------cEEEEeCCCCHHHHHHHHHHHHc----CCCeEEEEC--ChhhcCCc
Confidence 467899999999999999998876532 33344332 23456778888886 566799887 48999999
Q ss_pred cCCCCceEEEEEccCCCCcCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhcccccccCCCeeEEEEee
Q 004358 610 FDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMIFAD 681 (759)
Q Consensus 610 f~~~~~r~vii~glPfp~~~dp~v~ar~~~l~~~~~~~~~~~~~~~a~~~~~QaiGR~IR~~~D~g~iillD 681 (759)
+++ ++.||..++|.. + ....|++||+-|...+--++.++.
T Consensus 101 ~~~--~~~Vi~~~~p~~----~--------------------------~~~~qr~GR~~R~g~~g~~~~~~~ 140 (163)
T 2hjv_A 101 IEN--ISLVINYDLPLE----K--------------------------ESYVHRTGRTGRAGNKGKAISFVT 140 (163)
T ss_dssp CSC--CSEEEESSCCSS----H--------------------------HHHHHHTTTSSCTTCCEEEEEEEC
T ss_pred hhc--CCEEEEeCCCCC----H--------------------------HHHHHhccccCcCCCCceEEEEec
Confidence 997 778999887752 1 122589999999865533444443
No 81
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=97.82 E-value=5.4e-06 Score=92.50 Aligned_cols=57 Identities=18% Similarity=0.228 Sum_probs=48.8
Q ss_pred HHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccchhhHHHHHHHHH
Q 004358 29 KRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELK 88 (759)
Q Consensus 29 ~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~ 88 (759)
.+++.+++++++.||||+|||++|+.|++...... +. +++|.+||.++..|+.++++
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~--~~-~~lvl~Ptr~La~Q~~~~l~ 71 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQ--RL-RTAVLAPTRVVAAEMAEALR 71 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHT--TC-CEEEEECSHHHHHHHHHHTT
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhC--CC-cEEEECchHHHHHHHHHHhc
Confidence 56677889999999999999999999998766543 45 89999999999999888664
No 82
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=97.77 E-value=0.00014 Score=70.63 Aligned_cols=115 Identities=23% Similarity=0.297 Sum_probs=79.0
Q ss_pred HHHHhhcccCCcEEEEecCHHHHHHHHHHHhhcccHHHHhcCceEEEeCC-CchhHHHHHHHHHHhccCCCCeEEEEeec
Q 004358 523 LLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQ-DVVETTLALDNYRKACDCGRGAVFFSVAR 601 (759)
Q Consensus 523 ~l~~~~~~~~gg~lv~f~Sy~~l~~~~~~~~~~~~~~~l~~~k~if~E~~-~~~~~~~~l~~f~~~~~~~~~aiL~gv~~ 601 (759)
.|.+++...++.+|||+++....+.+.+.+...++ +...+-+. ...++...++.|+. ++-.||+++
T Consensus 45 ~L~~~l~~~~~~~lVF~~~~~~~~~l~~~L~~~g~-------~~~~lhg~~~~~~R~~~l~~F~~----g~~~vLvaT-- 111 (191)
T 2p6n_A 45 YLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGV-------EAVAIHGGKDQEERTKAIEAFRE----GKKDVLVAT-- 111 (191)
T ss_dssp HHHHHHTTSCSCEEEECSCHHHHHHHHHHHHHHTC-------CEEEECTTSCHHHHHHHHHHHHH----TSCSEEEEC--
T ss_pred HHHHHHHhCCCCEEEEECCHHHHHHHHHHHHHcCC-------cEEEEeCCCCHHHHHHHHHHHhc----CCCEEEEEc--
Confidence 34556666678999999999999999998876432 33344332 23456778999987 566799887
Q ss_pred CccccccccCCCCceEEEEEccCCCCcCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhcccccccCCCeeEEEEee
Q 004358 602 GKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMIFAD 681 (759)
Q Consensus 602 G~~~EGiDf~~~~~r~vii~glPfp~~~dp~v~ar~~~l~~~~~~~~~~~~~~~a~~~~~QaiGR~IR~~~D~g~iillD 681 (759)
..+++|+|+++ ++.||...+|.. +. ...|++||+-|....--++.++.
T Consensus 112 ~~~~~Gldi~~--v~~VI~~d~p~~----~~--------------------------~~~qr~GR~gR~g~~g~~i~l~~ 159 (191)
T 2p6n_A 112 DVASKGLDFPA--IQHVINYDMPEE----IE--------------------------NYVHRIGRTGCSGNTGIATTFIN 159 (191)
T ss_dssp HHHHTTCCCCC--CSEEEESSCCSS----HH--------------------------HHHHHHTTSCC---CCEEEEEEC
T ss_pred CchhcCCCccc--CCEEEEeCCCCC----HH--------------------------HHHHHhCccccCCCCcEEEEEEc
Confidence 48999999987 678998887742 11 12389999999765433455544
Q ss_pred c
Q 004358 682 K 682 (759)
Q Consensus 682 ~ 682 (759)
+
T Consensus 160 ~ 160 (191)
T 2p6n_A 160 K 160 (191)
T ss_dssp T
T ss_pred C
Confidence 3
No 83
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=97.74 E-value=0.00026 Score=67.64 Aligned_cols=115 Identities=16% Similarity=0.276 Sum_probs=75.1
Q ss_pred HHHhhccc-CCcEEEEecCHHHHHHHHHHHhhcccHHHHhcCceEEEeCC-CchhHHHHHHHHHHhccCCCCeEEEEeec
Q 004358 524 LVEMVSIV-PDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQ-DVVETTLALDNYRKACDCGRGAVFFSVAR 601 (759)
Q Consensus 524 l~~~~~~~-~gg~lv~f~Sy~~l~~~~~~~~~~~~~~~l~~~k~if~E~~-~~~~~~~~l~~f~~~~~~~~~aiL~gv~~ 601 (759)
|.++++.. ++.+|||+++....+.+...+...++ +...+-+. ....+...++.|+. ++-.||+++
T Consensus 25 L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~-------~~~~~~g~~~~~~R~~~~~~f~~----g~~~vLvaT-- 91 (175)
T 2rb4_A 25 LCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGH-------QVSLLSGELTVEQRASIIQRFRD----GKEKVLITT-- 91 (175)
T ss_dssp HHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTC-------CEEEECSSCCHHHHHHHHHHHHT----TSCSEEEEC--
T ss_pred HHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCC-------cEEEEeCCCCHHHHHHHHHHHHc----CCCeEEEEe--
Confidence 44444443 56899999999999999998876532 23333332 23456778888886 566799987
Q ss_pred CccccccccCCCCceEEEEEccCCCCcCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhcccccccCCCeeEEE
Q 004358 602 GKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMI 678 (759)
Q Consensus 602 G~~~EGiDf~~~~~r~vii~glPfp~~~dp~v~ar~~~l~~~~~~~~~~~~~~~a~~~~~QaiGR~IR~~~D~g~ii 678 (759)
..+++|+|+++ ++.||..++|.-+... + ......|.+||+-|.... |.++
T Consensus 92 ~~~~~Gid~~~--~~~Vi~~d~p~~~~~~--------------------~----~~~~~~qr~GR~gR~g~~-g~~~ 141 (175)
T 2rb4_A 92 NVCARGIDVKQ--VTIVVNFDLPVKQGEE--------------------P----DYETYLHRIGRTGRFGKK-GLAF 141 (175)
T ss_dssp CSCCTTTCCTT--EEEEEESSCCC--CCS--------------------C----CHHHHHHHHCBC----CC-EEEE
T ss_pred cchhcCCCccc--CCEEEEeCCCCCcccc--------------------C----CHHHHHHHhcccccCCCC-ceEE
Confidence 58999999997 7889998888532110 0 123446999999996543 5433
No 84
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=97.73 E-value=9.3e-06 Score=90.04 Aligned_cols=56 Identities=16% Similarity=0.159 Sum_probs=47.5
Q ss_pred HHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccchhhHHHHHHHHHh
Q 004358 31 ALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKL 89 (759)
Q Consensus 31 al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~ 89 (759)
++.+++++++.||||+|||++|+.|++..+... +. +++|.+||.++..|+.+.++.
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~--~~-~~lil~Ptr~La~Q~~~~l~~ 59 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARR--RL-RTLVLAPTRVVLSEMKEAFHG 59 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT--TC-CEEEEESSHHHHHHHHHHTTT
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhc--CC-eEEEEcchHHHHHHHHHHHhc
Confidence 456788999999999999999999988765543 45 899999999999999987764
No 85
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=97.70 E-value=2.8e-06 Score=98.76 Aligned_cols=119 Identities=17% Similarity=0.126 Sum_probs=78.3
Q ss_pred cCCcEEEEecCHHHHHHHHHHHhhcccHHHHhcCceEEEeCCCchhHHHHHHHHHHhccCCCCeEEEEeecCcccccccc
Q 004358 531 VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDF 610 (759)
Q Consensus 531 ~~gg~lv~f~Sy~~l~~~~~~~~~~~~~~~l~~~k~if~E~~~~~~~~~~l~~f~~~~~~~~~aiL~gv~~G~~~EGiDf 610 (759)
.++.+|||++|.+..+.+++.++..+ .+...+.+ .++..+++.|++ ++-.||+|+. -+.+|||+
T Consensus 409 ~~~~~lVF~~s~~~~e~la~~L~~~g-------~~v~~lHg---~eR~~v~~~F~~----g~~~VLVaTd--v~e~GIDi 472 (673)
T 2wv9_A 409 YAGKTVWFVASVKMSNEIAQCLQRAG-------KRVIQLNR---KSYDTEYPKCKN----GDWDFVITTD--ISEMGANF 472 (673)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTT-------CCEEEECS---SSHHHHGGGGGT----CCCSEEEECG--GGGTTCCC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCC-------CeEEEeCh---HHHHHHHHHHHC----CCceEEEECc--hhhcceee
Confidence 57899999999999999999987653 23334433 245667777765 6677999884 89999999
Q ss_pred CCCCceEEEEEccCCCCc--CCHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhcccccccCCCeeEEEEe
Q 004358 611 DRHYGRLVIMFGVPFQYT--LSKILLARLEYLRDTFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMIFA 680 (759)
Q Consensus 611 ~~~~~r~vii~glPfp~~--~dp~v~ar~~~l~~~~~~~~~~~~~~~a~~~~~QaiGR~IR~~~D~g~iill 680 (759)
+ ++.||..|.++.+. .|. +.+++ -.|-.|.....+.|.+||+=|.....|..+++
T Consensus 473 p---v~~VI~~g~~~~p~vi~da---------~~r~~---ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l 529 (673)
T 2wv9_A 473 G---ASRVIDCRKSVKPTILDEG---------EGRVI---LSVPSAITSASAAQRRGRVGRNPSQIGDEYHY 529 (673)
T ss_dssp C---CSEEEECCEECCEEEECST---------TCEEE---ECCSEECCHHHHHHHHTTSSCCSSCCCEEEEE
T ss_pred C---CcEEEECCCcccceeeecc---------cccce---ecccCCCCHHHHHHHhhccCCCCCCCCEEEEE
Confidence 8 68899888766421 010 00000 00111223455689999999985555555544
No 86
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=97.67 E-value=0.00042 Score=65.47 Aligned_cols=80 Identities=20% Similarity=0.331 Sum_probs=60.5
Q ss_pred cCCcEEEEecCHHHHHHHHHHHhhcccHHHHhcCceEEEeCC-CchhHHHHHHHHHHhccCCCCeEEEEeecCccccccc
Q 004358 531 VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQ-DVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGID 609 (759)
Q Consensus 531 ~~gg~lv~f~Sy~~l~~~~~~~~~~~~~~~l~~~k~if~E~~-~~~~~~~~l~~f~~~~~~~~~aiL~gv~~G~~~EGiD 609 (759)
.++.+|||+++....+.+.+.+...++ ....+-+. ...++...++.|+. ++..||+++ ..+++|+|
T Consensus 29 ~~~~~lVF~~~~~~~~~l~~~L~~~~~-------~~~~~~~~~~~~~r~~~~~~f~~----g~~~vlv~T--~~~~~G~d 95 (165)
T 1fuk_A 29 SVTQAVIFCNTRRKVEELTTKLRNDKF-------TVSAIYSDLPQQERDTIMKEFRS----GSSRILIST--DLLARGID 95 (165)
T ss_dssp TCSCEEEEESSHHHHHHHHHHHHHTTC-------CEEEECTTSCHHHHHHHHHHHHT----TSCSEEEEE--GGGTTTCC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHcCC-------CEEEEECCCCHHHHHHHHHHHHc----CCCEEEEEc--ChhhcCCC
Confidence 457899999999999999998876532 22333332 23456778888886 566799988 48999999
Q ss_pred cCCCCceEEEEEccCC
Q 004358 610 FDRHYGRLVIMFGVPF 625 (759)
Q Consensus 610 f~~~~~r~vii~glPf 625 (759)
+++ ++.||..++|.
T Consensus 96 ~~~--~~~Vi~~~~p~ 109 (165)
T 1fuk_A 96 VQQ--VSLVINYDLPA 109 (165)
T ss_dssp CCS--CSEEEESSCCS
T ss_pred ccc--CCEEEEeCCCC
Confidence 996 77899988875
No 87
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=97.65 E-value=0.00042 Score=68.52 Aligned_cols=107 Identities=19% Similarity=0.241 Sum_probs=74.9
Q ss_pred cCCcEEEEecCHHHHHHHHHHHhhcccHHHHhcCceEEEeCC-CchhHHHHHHHHHHhccCCCCeEEEEeecCccccccc
Q 004358 531 VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQ-DVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGID 609 (759)
Q Consensus 531 ~~gg~lv~f~Sy~~l~~~~~~~~~~~~~~~l~~~k~if~E~~-~~~~~~~~l~~f~~~~~~~~~aiL~gv~~G~~~EGiD 609 (759)
.++.+|||+++....+.+.+.+...++ +...+-+. ....+..+++.|+. |+-.||+|+ ..+.+|||
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~~~-------~~~~lhg~~~~~~r~~~~~~f~~----g~~~vlvaT--~~~~~Gid 96 (212)
T 3eaq_A 30 SPDRAMVFTRTKAETEEIAQGLLRLGH-------PAQALHGDLSQGERERVLGAFRQ----GEVRVLVAT--DVAARGLD 96 (212)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHHHTC-------CEEEECSSSCHHHHHHHHHHHHS----SSCCEEEEC--TTTTCSSS
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCC-------CEEEEECCCCHHHHHHHHHHHHC----CCCeEEEec--ChhhcCCC
Confidence 578999999999999999998876432 22333332 22456778888886 566799887 58999999
Q ss_pred cCCCCceEEEEEccCCCCcCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhcccccccCCCeeEEEEeec
Q 004358 610 FDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMIFADK 682 (759)
Q Consensus 610 f~~~~~r~vii~glPfp~~~dp~v~ar~~~l~~~~~~~~~~~~~~~a~~~~~QaiGR~IR~~~D~g~iillD~ 682 (759)
+++ ++.||..++|.. + ....|.+||.-|....--+++++++
T Consensus 97 i~~--v~~Vi~~~~p~~----~--------------------------~~~~qr~GR~gR~g~~g~~~~l~~~ 137 (212)
T 3eaq_A 97 IPQ--VDLVVHYRLPDR----A--------------------------EAYQHRSGRTGRAGRGGRVVLLYGP 137 (212)
T ss_dssp CCC--BSEEEESSCCSS----H--------------------------HHHHHHHTTBCCCC--BEEEEEECG
T ss_pred Ccc--CcEEEECCCCcC----H--------------------------HHHHHHhcccCCCCCCCeEEEEEch
Confidence 986 778998887752 1 2345899999998654224444444
No 88
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=97.59 E-value=0.00047 Score=66.60 Aligned_cols=106 Identities=18% Similarity=0.211 Sum_probs=65.9
Q ss_pred cCCcEEEEecCHHHHHHHHHHHhhcccHHHHhcCceEEEeCC-CchhHHHHHHHHHHhccCCCCeEEEEeecCccccccc
Q 004358 531 VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQ-DVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGID 609 (759)
Q Consensus 531 ~~gg~lv~f~Sy~~l~~~~~~~~~~~~~~~l~~~k~if~E~~-~~~~~~~~l~~f~~~~~~~~~aiL~gv~~G~~~EGiD 609 (759)
.++.+|||+++....+.+.+.+...++ ....+-+. ....+...++.|+. ++-.||+++ ..+++|+|
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~~g~-------~~~~lhg~~~~~~r~~~~~~f~~----g~~~vLvaT--~~~~~Gld 111 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYHEGY-------ACTSIHGDRSQRDREEALHQFRS----GKSPILVAT--AVAARGLD 111 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHHTTC-------CEEEEC--------CHHHHHHHH----TSSSEEEEE--C------C
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHcCC-------ceEEEeCCCCHHHHHHHHHHHHc----CCCeEEEEc--ChhhcCCC
Confidence 356899999999999999998876532 22333332 22345668889987 566799988 48999999
Q ss_pred cCCCCceEEEEEccCCCCcCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhcccccccCCCeeEEEEee
Q 004358 610 FDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMIFAD 681 (759)
Q Consensus 610 f~~~~~r~vii~glPfp~~~dp~v~ar~~~l~~~~~~~~~~~~~~~a~~~~~QaiGR~IR~~~D~g~iillD 681 (759)
+++ ++.||..++|. ++ ....|++||+-|....--++++++
T Consensus 112 i~~--~~~VI~~d~p~----s~--------------------------~~~~Qr~GR~~R~g~~g~~~~~~~ 151 (185)
T 2jgn_A 112 ISN--VKHVINFDLPS----DI--------------------------EEYVHRIGRTGRVGNLGLATSFFN 151 (185)
T ss_dssp CCS--BSEEEESSCCS----SH--------------------------HHHHHHHTTBCCTTSCEEEEEEEC
T ss_pred ccc--CCEEEEeCCCC----CH--------------------------HHHHHHccccCCCCCCcEEEEEEc
Confidence 996 67888877664 21 123489999999865433444444
No 89
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.58 E-value=0.00035 Score=82.69 Aligned_cols=67 Identities=16% Similarity=0.261 Sum_probs=49.5
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccchhhHHHHHHHHHh
Q 004358 16 NIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKL 89 (759)
Q Consensus 16 ~~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~ 89 (759)
...+.|.+.+..+. .+...+|.+|+|||||.... ..+.++... .+. +|+++++|+.-.+++.+.+..
T Consensus 356 ~Ln~~Q~~Av~~~l----~~~~~lI~GppGTGKT~ti~-~~i~~l~~~-~~~-~ilv~a~tn~A~~~l~~~l~~ 422 (800)
T 2wjy_A 356 DLNHSQVYAVKTVL----QRPLSLIQGPPGTGKTVTSA-TIVYHLARQ-GNG-PVLVCAPSNIAVDQLTEKIHQ 422 (800)
T ss_dssp CCCHHHHHHHHHHH----TSSEEEEECCTTSCHHHHHH-HHHHHHHTT-CSS-CEEEEESSHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhc----cCCeEEEEcCCCCCHHHHHH-HHHHHHHHc-CCC-cEEEEcCcHHHHHHHHHHHHH
Confidence 35789998776554 36789999999999998643 333443332 245 899999999999998887654
No 90
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=97.50 E-value=0.00053 Score=65.31 Aligned_cols=106 Identities=12% Similarity=0.142 Sum_probs=74.5
Q ss_pred cCCcEEEEecCHHHHHHHHHHHhhcccHHHHhcCceEEEeCC-CchhHHHHHHHHHHhccCCCCeEEEEeecCccccccc
Q 004358 531 VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQ-DVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGID 609 (759)
Q Consensus 531 ~~gg~lv~f~Sy~~l~~~~~~~~~~~~~~~l~~~k~if~E~~-~~~~~~~~l~~f~~~~~~~~~aiL~gv~~G~~~EGiD 609 (759)
.++.+|||+++....+.+.+.+...++ +...+-+. ...++...++.|+. ++-.||+++ ..+++|+|
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~~~-------~~~~~hg~~~~~~r~~~~~~f~~----g~~~vLvaT--~~~~~Gld 96 (172)
T 1t5i_A 30 EFNQVVIFVKSVQRCIALAQLLVEQNF-------PAIAIHRGMPQEERLSRYQQFKD----FQRRILVAT--NLFGRGMD 96 (172)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHTTC-------CEEEECTTSCHHHHHHHHHHHHT----TSCSEEEES--SCCSTTCC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhcCC-------CEEEEECCCCHHHHHHHHHHHHC----CCCcEEEEC--CchhcCcc
Confidence 457899999999999999999876532 33334332 23456678888886 567799887 58999999
Q ss_pred cCCCCceEEEEEccCCCCcCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhcccccccCCCeeEEEEee
Q 004358 610 FDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMIFAD 681 (759)
Q Consensus 610 f~~~~~r~vii~glPfp~~~dp~v~ar~~~l~~~~~~~~~~~~~~~a~~~~~QaiGR~IR~~~D~g~iillD 681 (759)
+++ ++.||..++|. ++ ....|++||+-|....--++++++
T Consensus 97 i~~--~~~Vi~~d~p~----~~--------------------------~~~~qr~GR~~R~g~~g~~~~~~~ 136 (172)
T 1t5i_A 97 IER--VNIAFNYDMPE----DS--------------------------DTYLHRVARAGRFGTKGLAITFVS 136 (172)
T ss_dssp GGG--CSEEEESSCCS----SH--------------------------HHHHHHHHHHTGGGCCCEEEEEEC
T ss_pred hhh--CCEEEEECCCC----CH--------------------------HHHHHHhcccccCCCCcEEEEEEc
Confidence 986 77899988774 11 223488899988765433444443
No 91
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.48 E-value=0.0003 Score=83.40 Aligned_cols=67 Identities=18% Similarity=0.297 Sum_probs=49.3
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccchhhHHHHHHHHHh
Q 004358 16 NIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKL 89 (759)
Q Consensus 16 ~~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~ 89 (759)
...+.|.+.+..+. .+...+|.||+|||||..... .+.++... .+. +|+++|+|+.-.+++.+.|..
T Consensus 360 ~Ln~~Q~~Av~~~l----~~~~~lI~GppGTGKT~~i~~-~i~~l~~~-~~~-~ILv~a~tn~A~d~l~~rL~~ 426 (802)
T 2xzl_A 360 QLNSSQSNAVSHVL----QRPLSLIQGPPGTGKTVTSAT-IVYHLSKI-HKD-RILVCAPSNVAVDHLAAKLRD 426 (802)
T ss_dssp CCCHHHHHHHHHHT----TCSEEEEECSTTSSHHHHHHH-HHHHHHHH-HCC-CEEEEESSHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHh----cCCCEEEECCCCCCHHHHHHH-HHHHHHhC-CCC-eEEEEcCcHHHHHHHHHHHHh
Confidence 35799998776654 367899999999999976433 33333221 145 899999999999999887765
No 92
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=97.12 E-value=0.0033 Score=65.48 Aligned_cols=107 Identities=18% Similarity=0.231 Sum_probs=72.6
Q ss_pred cCCcEEEEecCHHHHHHHHHHHhhcccHHHHhcCceEEEeCC-CchhHHHHHHHHHHhccCCCCeEEEEeecCccccccc
Q 004358 531 VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQ-DVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGID 609 (759)
Q Consensus 531 ~~gg~lv~f~Sy~~l~~~~~~~~~~~~~~~l~~~k~if~E~~-~~~~~~~~l~~f~~~~~~~~~aiL~gv~~G~~~EGiD 609 (759)
.++.+|||+++....+.+.+.+...++ ....+-+. .......+++.|+. |+..||+|+ .-+.+|||
T Consensus 27 ~~~~~LVF~~t~~~~~~l~~~L~~~g~-------~~~~lhg~l~~~~r~~~~~~f~~----g~~~vLVaT--~va~~Gid 93 (300)
T 3i32_A 27 SPDRAMVFTRTKAETEEIAQGLLRLGH-------PAQALHGDMSQGERERVMGAFRQ----GEVRVLVAT--DVAARGLD 93 (300)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHTTTC-------CEEEECSCCCTHHHHHHHHHHHH----TSCCEEEEC--STTTCSTT
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCC-------CEEEEeCCCCHHHHHHHHHHhhc----CCceEEEEe--chhhcCcc
Confidence 478999999999999999998876532 22333332 23456778899987 567799987 48999999
Q ss_pred cCCCCceEEEEEccCCCCcCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhcccccccCCCeeEEEEeec
Q 004358 610 FDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMIFADK 682 (759)
Q Consensus 610 f~~~~~r~vii~glPfp~~~dp~v~ar~~~l~~~~~~~~~~~~~~~a~~~~~QaiGR~IR~~~D~g~iillD~ 682 (759)
+++ ++.||..++|... ....|.+||.=|....--++.++.+
T Consensus 94 i~~--v~~VI~~d~p~s~------------------------------~~y~Qr~GRagR~g~~G~~i~l~~~ 134 (300)
T 3i32_A 94 IPQ--VDLVVHYRMPDRA------------------------------EAYQHRSGRTGRAGRGGRVVLLYGP 134 (300)
T ss_dssp CCC--CSEEEESSCCSST------------------------------THHHHHHTCCC-----CEEEEEECS
T ss_pred ccc--eeEEEEcCCCCCH------------------------------HHHHHHccCcCcCCCCceEEEEeCh
Confidence 986 6789988887521 1234889999997554224444443
No 93
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=96.10 E-value=9.5e-05 Score=70.39 Aligned_cols=80 Identities=20% Similarity=0.281 Sum_probs=57.5
Q ss_pred cCCcEEEEecCHHHHHHHHHHHhhcccHHHHhcCceEEEeCC-CchhHHHHHHHHHHhccCCCCeEEEEeecCccccccc
Q 004358 531 VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQ-DVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGID 609 (759)
Q Consensus 531 ~~gg~lv~f~Sy~~l~~~~~~~~~~~~~~~l~~~k~if~E~~-~~~~~~~~l~~f~~~~~~~~~aiL~gv~~G~~~EGiD 609 (759)
.++.+|||+++....+.+.+.+...++ +...+.+. ...++...++.|+. ++-.||+++ ..+++|+|
T Consensus 29 ~~~~~iVF~~~~~~~~~l~~~L~~~~~-------~~~~~~g~~~~~~r~~~~~~f~~----g~~~vLvaT--~~~~~Gid 95 (170)
T 2yjt_D 29 EATRSIVFVRKRERVHELANWLREAGI-------NNCYLEGEMVQGKRNEAIKRLTE----GRVNVLVAT--DVAARGID 95 (170)
Confidence 346899999999999999988876532 11222221 12345667888876 566789887 48999999
Q ss_pred cCCCCceEEEEEccCC
Q 004358 610 FDRHYGRLVIMFGVPF 625 (759)
Q Consensus 610 f~~~~~r~vii~glPf 625 (759)
+++ ++.||..++|.
T Consensus 96 ~~~--~~~Vi~~~~p~ 109 (170)
T 2yjt_D 96 IPD--VSHVFNFDMPR 109 (170)
Confidence 997 77889888774
No 94
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=96.91 E-value=0.00021 Score=79.94 Aligned_cols=114 Identities=17% Similarity=0.216 Sum_probs=0.0
Q ss_pred cCCcEEEEecCHHHHHHHHHHHhhcccHHHHhcCceEEEeC-CCchhHHHHHHHHHHhccCCCCeEEEEeecCccccccc
Q 004358 531 VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIET-QDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGID 609 (759)
Q Consensus 531 ~~gg~lv~f~Sy~~l~~~~~~~~~~~~~~~l~~~k~if~E~-~~~~~~~~~l~~f~~~~~~~~~aiL~gv~~G~~~EGiD 609 (759)
..+.++||++|....+.+++.+...+. ...++-+ .....+..+++.|++ |+..||+|+. .+++|||
T Consensus 332 ~~~~~lvF~~s~~~~~~l~~~L~~~~~-------~v~~lh~~~~~~~R~~~~~~f~~----g~~~iLv~T~--~~~~GlD 398 (479)
T 3fmp_B 332 TIAQAMIFCHTRKTASWLAAELSKEGH-------QVALLSGEMMVEQRAAVIERFRE----GKEKVLVTTN--VCARGID 398 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCceEEEeCcHHHHHHHHHHHHhCCc-------cEEEecCCCCHHHHHHHHHHHHc----CCCcEEEEcc--ccccCCc
Confidence 347899999999999999988876432 1111211 122345667888876 5667999884 8999999
Q ss_pred cCCCCceEEEEEccCCCCcCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhcccccccCCCeeEEEEeecc
Q 004358 610 FDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMIFADKR 683 (759)
Q Consensus 610 f~~~~~r~vii~glPfp~~~dp~v~ar~~~l~~~~~~~~~~~~~~~a~~~~~QaiGR~IR~~~D~g~iillD~R 683 (759)
+|+ ++.||..++|..... + ..+....|.+||.-|....--+++++++.
T Consensus 399 ip~--v~~VI~~d~p~~~~~---------------------~---~s~~~~~Qr~GRagR~g~~G~~i~~~~~~ 446 (479)
T 3fmp_B 399 VEQ--VSVVINFDLPVDKDG---------------------N---PDNETYLHRIGRTGRFGKRGLAVNMVDSK 446 (479)
T ss_dssp --------------------------------------------------------------------------
T ss_pred ccc--CCEEEEecCCCCCcc---------------------C---CCHHHHHHHhcccccCCCCceEEEEEcCc
Confidence 997 666887777753210 0 12345579999999976543355666543
No 95
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=96.90 E-value=0.00066 Score=78.74 Aligned_cols=122 Identities=12% Similarity=0.071 Sum_probs=77.3
Q ss_pred CCcEEEEecCHHHHHHHHHHHhhcccHHHHhcCceEEEeCCC-chhHHHHHHHHHHhccCCCCeEEEEeecCcccccccc
Q 004358 532 PDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQD-VVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDF 610 (759)
Q Consensus 532 ~gg~lv~f~Sy~~l~~~~~~~~~~~~~~~l~~~k~if~E~~~-~~~~~~~l~~f~~~~~~~~~aiL~gv~~G~~~EGiDf 610 (759)
+.|.+|||.|.+..+.+.+.+...+ .+...+-+.- ...+...++.|+. ..|+-.||+|+. .+..|||+
T Consensus 320 ~~g~iIf~~s~~~ie~la~~L~~~g-------~~v~~lHG~L~~~~R~~~~~~F~~--~~g~~~VLVATd--i~e~GlDi 388 (677)
T 3rc3_A 320 RPGDCIVCFSKNDIYSVSRQIEIRG-------LESAVIYGSLPPGTKLAQAKKFND--PNDPCKILVATD--AIGMGLNL 388 (677)
T ss_dssp CTTEEEECSSHHHHHHHHHHHHHTT-------CCCEEECTTSCHHHHHHHHHHHHC--TTSSCCEEEECG--GGGSSCCC
T ss_pred CCCCEEEEcCHHHHHHHHHHHHhcC-------CCeeeeeccCCHHHHHHHHHHHHc--cCCCeEEEEeCc--HHHCCcCc
Confidence 4566888899998888888887643 2333343332 2345567788875 123456888874 89999999
Q ss_pred CCCCceEEEEEccCCCCcCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhcccccccCCC--eeEEEEeecc
Q 004358 611 DRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQAAQCVGRVIRSKAD--YGMMIFADKR 683 (759)
Q Consensus 611 ~~~~~r~vii~glPfp~~~dp~v~ar~~~l~~~~~~~~~~~~~~~a~~~~~QaiGR~IR~~~D--~g~iillD~R 683 (759)
+ ++.||..|+|.. ..||. ++ .-+.+.....+.|.+||.=|...+ .|.++++...
T Consensus 389 -~--v~~VI~~~~~k~-~~~~~-----------G~----~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~ 444 (677)
T 3rc3_A 389 -S--IRRIIFYSLIKP-SINEK-----------GE----RELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHE 444 (677)
T ss_dssp -C--BSEEEESCSBC---------------------------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTT
T ss_pred -C--ccEEEECCcccc-ccccC-----------Cc----cccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecc
Confidence 4 899999998864 12222 10 001122345678999999998876 6888887543
No 96
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.84 E-value=0.0033 Score=69.79 Aligned_cols=68 Identities=21% Similarity=0.297 Sum_probs=52.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCC-cEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccchhhHHH
Q 004358 12 FPYDNIYPEQYSYMLELKRALDAKG-HCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEK 82 (759)
Q Consensus 12 FPy~~~r~~Q~~~~~~v~~al~~~~-~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~~l~~Q 82 (759)
.||..+.+.|++.+..+...+.+++ +++|.||.|||||.. +...+.++.... .. +|+++|+|+...+.
T Consensus 21 ~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~l-l~~~~~~l~~~~-~~-~il~~a~T~~Aa~~ 89 (459)
T 3upu_A 21 MTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTL-TKFIIEALISTG-ET-GIILAAPTHAAKKI 89 (459)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHH-HHHHHHHHHHTT-CC-CEEEEESSHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHH-HHHHHHHHHhcC-Cc-eEEEecCcHHHHHH
Confidence 4666778999999999999998876 999999999999964 345555555442 23 69999999876543
No 97
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=96.76 E-value=0.0052 Score=67.82 Aligned_cols=76 Identities=11% Similarity=0.129 Sum_probs=50.3
Q ss_pred cCCcEEEEecCHHHHHHHHHHHhhcccHHHHhcCceEEEeCCCchhHHHHHHHHHHhccCCCCeEEEEeecCcccccccc
Q 004358 531 VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDF 610 (759)
Q Consensus 531 ~~gg~lv~f~Sy~~l~~~~~~~~~~~~~~~l~~~k~if~E~~~~~~~~~~l~~f~~~~~~~~~aiL~gv~~G~~~EGiDf 610 (759)
.++.++||+||.+..+.+++.++..+ .+...+.+ ..+..+++.|++ |+-.||+++. -+..|||+
T Consensus 176 ~~~~~lVF~~s~~~a~~l~~~L~~~~-------~~v~~lhg---~~R~~~~~~F~~----g~~~vLVaT~--v~e~GiDi 239 (440)
T 1yks_A 176 DKRPTAWFLPSIRAANVMAASLRKAG-------KSVVVLNR---KTFEREYPTIKQ----KKPDFILATD--IAEMGANL 239 (440)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTT-------CCEEECCS---SSCC------------CCCSEEEESS--STTCCTTC
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHcC-------CCEEEecc---hhHHHHHhhhcC----CCceEEEECC--hhheeecc
Confidence 47899999999999999999987653 23333333 234567788876 6778999874 89999999
Q ss_pred CCCCceEEEEEccCC
Q 004358 611 DRHYGRLVIMFGVPF 625 (759)
Q Consensus 611 ~~~~~r~vii~glPf 625 (759)
| ++.||..|..+
T Consensus 240 p---v~~VI~~g~~~ 251 (440)
T 1yks_A 240 C---VERVLDCRTAF 251 (440)
T ss_dssp C---CSEEEECCEEE
T ss_pred C---ceEEEeCCccc
Confidence 8 77888766543
No 98
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=96.34 E-value=0.007 Score=70.91 Aligned_cols=85 Identities=14% Similarity=0.192 Sum_probs=57.7
Q ss_pred CCcEEEEecCHHHHHHHHHHHhhcccHHHHhcCceEEEeCC---------CchhHHHHHHHHHHhccCCCCeEEEEeecC
Q 004358 532 PDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQ---------DVVETTLALDNYRKACDCGRGAVFFSVARG 602 (759)
Q Consensus 532 ~gg~lv~f~Sy~~l~~~~~~~~~~~~~~~l~~~k~if~E~~---------~~~~~~~~l~~f~~~~~~~~~aiL~gv~~G 602 (759)
++.+|||+++....+.+.+.+.....+... ..+...+-+. ...++..+++.|++ |+-.||+|+.
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~-g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~----g~~~VLVaT~-- 472 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEV-GVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRT----GKINLLIATT-- 472 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC------CEECCCSCCCTTCCCCCHHHHHHHHHHHCC-------CCSEEEC--
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCcccccc-CcceEEEECCCCccCCCCCCHHHHHHHHHHHhc----CCCcEEEEcc--
Confidence 689999999999999999988764111000 1122333332 23456778888876 5667999884
Q ss_pred ccccccccCCCCceEEEEEccCC
Q 004358 603 KVAEGIDFDRHYGRLVIMFGVPF 625 (759)
Q Consensus 603 ~~~EGiDf~~~~~r~vii~glPf 625 (759)
.++||||+| .++.||..++|.
T Consensus 473 ~~~~GIDip--~v~~VI~~d~p~ 493 (699)
T 4gl2_A 473 VAEEGLDIK--ECNIVIRYGLVT 493 (699)
T ss_dssp SCCTTSCCC--SCCCCEEESCCC
T ss_pred ccccCCccc--cCCEEEEeCCCC
Confidence 899999999 578899888774
No 99
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=96.21 E-value=0.0058 Score=67.99 Aligned_cols=94 Identities=20% Similarity=0.250 Sum_probs=68.4
Q ss_pred cCCcEEEEecCHHHHHHHHHHHhhcccHHHHhcCceEEEeCCCchhHHHHHHHHHHhccCCCCeEEEEeecCcccccccc
Q 004358 531 VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDF 610 (759)
Q Consensus 531 ~~gg~lv~f~Sy~~l~~~~~~~~~~~~~~~l~~~k~if~E~~~~~~~~~~l~~f~~~~~~~~~aiL~gv~~G~~~EGiDf 610 (759)
.++.+|||+++...++.+.+.+... ++--..+..++..+++.|++ ++..||+|+ ..+.+|+|+
T Consensus 348 ~~~k~lvF~~~~~~~~~l~~~l~~~-----------~~~g~~~~~~R~~~~~~F~~----g~~~vLv~T--~~~~~Gldl 410 (472)
T 2fwr_A 348 RKDKIIIFTRHNELVYRISKVFLIP-----------AITHRTSREEREEILEGFRT----GRFRAIVSS--QVLDEGIDV 410 (472)
T ss_dssp SSSCBCCBCSCHHHHHHHHHHTTCC-----------BCCSSSCSHHHHTHHHHHHH----SSCSBCBCS--SCCCSSSCS
T ss_pred CCCcEEEEECCHHHHHHHHHHhCcc-----------eeeCCCCHHHHHHHHHHHhC----CCCCEEEEc--CchhcCccc
Confidence 4679999999999998888776421 11111223456778899987 566788877 589999999
Q ss_pred CCCCceEEEEEccCCCCcCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhcccccccCCC
Q 004358 611 DRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQAAQCVGRVIRSKAD 673 (759)
Q Consensus 611 ~~~~~r~vii~glPfp~~~dp~v~ar~~~l~~~~~~~~~~~~~~~a~~~~~QaiGR~IR~~~D 673 (759)
|+ +..||+...|... ..+.|++||+-|....
T Consensus 411 p~--~~~Vi~~~~~~s~------------------------------~~~~Q~~GR~~R~g~~ 441 (472)
T 2fwr_A 411 PD--ANVGVIMSGSGSA------------------------------REYIQRLGRILRPSKG 441 (472)
T ss_dssp CC--BSEEEEECCSSCC------------------------------HHHHHHHHHSBCCCTT
T ss_pred cc--CcEEEEECCCCCH------------------------------HHHHHHHhhccCCCCC
Confidence 86 6789988866321 3456999999998765
No 100
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=96.14 E-value=0.037 Score=64.14 Aligned_cols=76 Identities=18% Similarity=0.134 Sum_probs=60.7
Q ss_pred eeeeCCCCCCCHHHHHHHHHHHHHHHhCC-cEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccchhhHHHHHHH
Q 004358 8 VTVYFPYDNIYPEQYSYMLELKRALDAKG-HCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAE 86 (759)
Q Consensus 8 ~~v~FPy~~~r~~Q~~~~~~v~~al~~~~-~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~~l~~Q~~~e 86 (759)
..+.=||+| +.-|.+.+..+.+.+.++. +.++-+.||+|||+.. +.+.. .. ++ +++|.|++..+..|+.+|
T Consensus 5 ~~~~~~~~p-~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~--a~~~~-~~---~~-~~lvv~~~~~~A~~l~~e 76 (661)
T 2d7d_A 5 FELVSKYQP-QGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTV--SNLIK-EV---NK-PTLVIAHNKTLAGQLYSE 76 (661)
T ss_dssp CCCCCSCCC-CTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHH--HHHHH-HH---CC-CEEEECSSHHHHHHHHHH
T ss_pred ceeecCCCC-CCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHH--HHHHH-Hh---CC-CEEEEECCHHHHHHHHHH
Confidence 345668986 9999999999999998885 5778899999999853 32322 21 34 799999999999999999
Q ss_pred HHhhh
Q 004358 87 LKLLH 91 (759)
Q Consensus 87 l~~l~ 91 (759)
|+.+.
T Consensus 77 l~~~~ 81 (661)
T 2d7d_A 77 FKEFF 81 (661)
T ss_dssp HHHHC
T ss_pred HHHHc
Confidence 99873
No 101
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=96.13 E-value=0.14 Score=59.22 Aligned_cols=150 Identities=11% Similarity=0.125 Sum_probs=98.3
Q ss_pred cCCcEEEEecCHHHHHHHHHHHhhcccHHHHhcCceEEEeCCC-chhHHHHHHHHHHhccCCCC---eEEEEeecCcccc
Q 004358 531 VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQD-VVETTLALDNYRKACDCGRG---AVFFSVARGKVAE 606 (759)
Q Consensus 531 ~~gg~lv~f~Sy~~l~~~~~~~~~~~~~~~l~~~k~if~E~~~-~~~~~~~l~~f~~~~~~~~~---aiL~gv~~G~~~E 606 (759)
.+..+|||..+-..++.+...+...+ .+.+.+.+.. ..++..++++|+. ++. .+|+++ ....+
T Consensus 415 ~~~k~lIFs~~~~~~~~l~~~l~~~g-------~~~~~l~G~~~~~~R~~~i~~F~~----~~~~~~v~L~st--~a~g~ 481 (644)
T 1z3i_X 415 TSDKVVLVSNYTQTLDLFEKLCRNRR-------YLYVRLDGTMSIKKRAKIVERFNN----PSSPEFIFMLSS--KAGGC 481 (644)
T ss_dssp CCCEEEEEESCHHHHHHHHHHHHHHT-------CCEEEECSSCCHHHHHHHHHHHHS----TTCCCCEEEEEG--GGSCT
T ss_pred CCCEEEEEEccHHHHHHHHHHHHHCC-------CCEEEEeCCCCHHHHHHHHHHhcC----CCCCcEEEEEec--ccccC
Confidence 45788888888888888888776543 2334555433 2457788999986 332 255555 47899
Q ss_pred ccccCCCCceEEEEEccCCCCcCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhcccccccCCCeeEEEEeecccCC
Q 004358 607 GIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMIFADKRYSR 686 (759)
Q Consensus 607 GiDf~~~~~r~vii~glPfp~~~dp~v~ar~~~l~~~~~~~~~~~~~~~a~~~~~QaiGR~IR~~~D~g~iillD~R~~~ 686 (759)
|+|+++ +..||+...|+- |. ...|++||+-|-....-+.|. |+..
T Consensus 482 Glnl~~--a~~Vi~~d~~wn----p~--------------------------~~~Qa~gR~~R~Gq~~~v~v~---~lv~ 526 (644)
T 1z3i_X 482 GLNLIG--ANRLVMFDPDWN----PA--------------------------NDEQAMARVWRDGQKKTCYIY---RLLS 526 (644)
T ss_dssp TCCCTT--EEEEEECSCCSS----HH--------------------------HHHHHHTTSSSTTCCSCEEEE---EEEE
T ss_pred Cccccc--CCEEEEECCCCC----cc--------------------------HHHHHHHhhhhcCCCCceEEE---EEEE
Confidence 999986 889999887752 22 234999999997665444332 1111
Q ss_pred ccccCCCchHHHhhccccccCCCHHHHHHHHHHHHHHhcCCCCcCCcccccccccHHHHHhhh
Q 004358 687 HDKRSKLPGWILSHLRDAHLNLSTDMALHIAREFLRKMAQPYDKAGSIGRKTLLSQADLEKMT 749 (759)
Q Consensus 687 ~~~~~~lp~w~~~~~~~~~~~~~~~~~~~~~~~Ff~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 749 (759)
..|+|+-+-.....=+.+.......++ ...+.+|.++|...+
T Consensus 527 --------------------~~tiEe~i~~~~~~K~~l~~~v~~~~~-~~~~~~~~~~l~~Lf 568 (644)
T 1z3i_X 527 --------------------TGTIEEKILQRQAHKKALSSCVVDEEQ-DVERHFSLGELRELF 568 (644)
T ss_dssp --------------------TTSHHHHHHHHHHHHHHTSCCCCSCSS-SCCCSSCHHHHHHHT
T ss_pred --------------------CCCHHHHHHHHHHHHHHHHHHHhcCcc-hhhcCCCHHHHHHHh
Confidence 125676666666666677766666554 345678888887664
No 102
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.11 E-value=0.01 Score=68.14 Aligned_cols=67 Identities=16% Similarity=0.036 Sum_probs=49.9
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHH--HHHHHHHHHHHHhCCCCCcEEEEEccchhhHHHHHHHHHhh
Q 004358 18 YPEQYSYMLELKRALDAKGHCLLEMPTGTGKT--IALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (759)
Q Consensus 18 r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKT--la~L~~~l~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~l 90 (759)
-+.|++.+..+. .++.+++.+|+||||| ++++++.+.-... ..+. +|+++++|.....|+-+.+...
T Consensus 151 ~~~Q~~Ai~~~l----~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~-~~~~-~vll~APTg~AA~~L~e~~~~~ 219 (608)
T 1w36_D 151 INWQKVAAAVAL----TRRISVISGGPGTGKTTTVAKLLAALIQMAD-GERC-RIRLAAPTGKAAARLTESLGKA 219 (608)
T ss_dssp CCHHHHHHHHHH----TBSEEEEECCTTSTHHHHHHHHHHHHHHTCS-SCCC-CEEEEBSSHHHHHHHHHHHTHH
T ss_pred CHHHHHHHHHHh----cCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh-cCCC-eEEEEeCChhHHHHHHHHHHHH
Confidence 477888776544 5789999999999999 6777776543211 1234 8999999999998887766553
No 103
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=95.97 E-value=0.007 Score=67.17 Aligned_cols=122 Identities=17% Similarity=0.112 Sum_probs=72.2
Q ss_pred cCCcEEEEecCHHHHHHHHHHHhhcccHHHHhcCceEEEeCCCchhHHHHHHHHHHhccCCCCeEEEEeecCcccccccc
Q 004358 531 VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDF 610 (759)
Q Consensus 531 ~~gg~lv~f~Sy~~l~~~~~~~~~~~~~~~l~~~k~if~E~~~~~~~~~~l~~f~~~~~~~~~aiL~gv~~G~~~EGiDf 610 (759)
.++.+|||++|....+.+++.++..++ +...+.+. .+..+++.|++ |+..||+|+. .+.+|||+
T Consensus 189 ~~~~~LVF~~s~~~~~~l~~~L~~~g~-------~v~~lh~~---~R~~~~~~f~~----g~~~iLVaT~--v~~~GiDi 252 (459)
T 2z83_A 189 YAGKTVWFVASVKMGNEIAMCLQRAGK-------KVIQLNRK---SYDTEYPKCKN----GDWDFVITTD--ISEMGANF 252 (459)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTC-------CEEEESTT---CCCCCGGGSSS----CCCSEEEESS--CC---CCC
T ss_pred cCCCEEEEeCChHHHHHHHHHHHhcCC-------cEEecCHH---HHHHHHhhccC----CCceEEEECC--hHHhCeec
Confidence 478999999999999999999876532 22223222 22334555554 6778999884 89999999
Q ss_pred CCCCceEEEEEccCCCCcCCHHHHHHHHHHHHhcCCCcch-hhHHHHHHHHHHhcccccccCCCee-EEEEeec
Q 004358 611 DRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGD-FLTFDALRQAAQCVGRVIRSKADYG-MMIFADK 682 (759)
Q Consensus 611 ~~~~~r~vii~glPfp~~~dp~v~ar~~~l~~~~~~~~~~-~~~~~a~~~~~QaiGR~IR~~~D~g-~iillD~ 682 (759)
++ +.||-.|..+.+..+ ++.. ..... |-.|.......|.+||+=|.....| +++++..
T Consensus 253 p~---~~VI~~G~~~~~~~~---------~~~~--~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~ 312 (459)
T 2z83_A 253 GA---SRVIDCRKSVKPTIL---------EEGE--GRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGA 312 (459)
T ss_dssp SC---SEEEECCEECCEEEE---------CSSS--CEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred CC---CEEEECCcccccccc---------cccc--cccccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEcc
Confidence 97 889988855433210 0000 00000 1112234557899999999875333 4555544
No 104
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=95.93 E-value=0.094 Score=53.54 Aligned_cols=94 Identities=15% Similarity=0.102 Sum_probs=63.3
Q ss_pred HHHHHHHHHhhcccCCcEEEEecCHHHHHHHHHHHhhc-ccHHHHhcCceEEEeCCC-chhHHHHHHHHHHhccCCCCe-
Q 004358 518 RNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDS-GILKEIMQHKLVFIETQD-VVETTLALDNYRKACDCGRGA- 594 (759)
Q Consensus 518 ~~~~~~l~~~~~~~~gg~lv~f~Sy~~l~~~~~~~~~~-~~~~~l~~~k~if~E~~~-~~~~~~~l~~f~~~~~~~~~a- 594 (759)
..+.+.|.++. ..+..+|||..+-..++.+...+... | .+...+.+.. ...+..+++.|+.. ....
T Consensus 99 ~~L~~ll~~~~-~~~~kvlIFs~~~~~~~~l~~~L~~~~g-------~~~~~l~G~~~~~~R~~~i~~F~~~---~~~~v 167 (271)
T 1z5z_A 99 IRTMEIIEEAL-DEGDKIAIFTQFVDMGKIIRNIIEKELN-------TEVPFLYGELSKKERDDIISKFQNN---PSVKF 167 (271)
T ss_dssp HHHHHHHHHHH-HTTCCEEEEESCHHHHHHHHHHHHHHHC-------SCCCEECTTSCHHHHHHHHHHHHHC---TTCCE
T ss_pred HHHHHHHHHHH-hCCCeEEEEeccHHHHHHHHHHHHHhcC-------CcEEEEECCCCHHHHHHHHHHhcCC---CCCCE
Confidence 34445454443 25678999999999998888887652 2 2233444432 24577889999872 1233
Q ss_pred EEEEeecCccccccccCCCCceEEEEEccCCC
Q 004358 595 VFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQ 626 (759)
Q Consensus 595 iL~gv~~G~~~EGiDf~~~~~r~vii~glPfp 626 (759)
+|+++ ....+|+|+++ +..||+..+|+-
T Consensus 168 ~L~st--~~~g~Glnl~~--a~~VI~~d~~wn 195 (271)
T 1z5z_A 168 IVLSV--KAGGFGINLTS--ANRVIHFDRWWN 195 (271)
T ss_dssp EEEEC--CTTCCCCCCTT--CSEEEECSCCSC
T ss_pred EEEeh--hhhcCCcCccc--CCEEEEECCCCC
Confidence 55555 47899999986 789999998874
No 105
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=95.85 E-value=0.02 Score=64.66 Aligned_cols=99 Identities=17% Similarity=0.243 Sum_probs=58.1
Q ss_pred HHHHHHHHHhhcc-cCCcEEEEecCHHHHHHHHHHHhhcccHHHHhcCceEEEeC---------CCchhHHHHHHHHHHh
Q 004358 518 RNYGKLLVEMVSI-VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIET---------QDVVETTLALDNYRKA 587 (759)
Q Consensus 518 ~~~~~~l~~~~~~-~~gg~lv~f~Sy~~l~~~~~~~~~~~~~~~l~~~k~if~E~---------~~~~~~~~~l~~f~~~ 587 (759)
..+.+.|.+.... .++.+|||+++....+.+.+.+...+....+ +..++-+ ....++..+++.|++.
T Consensus 374 ~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~ 450 (555)
T 3tbk_A 374 RDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFL---KPGILTGRGRTNRATGMTLPAQKCVLEAFRAS 450 (555)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTC---CEEECCC-------------------------
T ss_pred HHHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCce---eeeEEEecCCcccccccCHHHHHHHHHHHhcC
Confidence 4556666655543 4589999999999999999999876432111 1111111 1113456678888862
Q ss_pred ccCCCCeEEEEeecCccccccccCCCCceEEEEEccCCC
Q 004358 588 CDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQ 626 (759)
Q Consensus 588 ~~~~~~aiL~gv~~G~~~EGiDf~~~~~r~vii~glPfp 626 (759)
|+-.||+|+ ..+++|||++ .++.||..++|.-
T Consensus 451 ---g~~~vLvaT--~~~~~GlDlp--~v~~VI~~d~p~s 482 (555)
T 3tbk_A 451 ---GDNNILIAT--SVADEGIDIA--ECNLVILYEYVGN 482 (555)
T ss_dssp ----CCSEEEEC--CCTTCCEETT--SCSEEEEESCCSS
T ss_pred ---CCeeEEEEc--chhhcCCccc--cCCEEEEeCCCCC
Confidence 455699877 4899999999 5889999998863
No 106
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=95.80 E-value=0.047 Score=63.35 Aligned_cols=70 Identities=20% Similarity=0.070 Sum_probs=56.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCC-cEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccchhhHHHHHHHHHhh
Q 004358 13 PYDNIYPEQYSYMLELKRALDAKG-HCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (759)
Q Consensus 13 Py~~~r~~Q~~~~~~v~~al~~~~-~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~l 90 (759)
||+ |++.|.+.+..+.+.+..+. +.++.+.||+|||+.+. .+.. .. ++ +++|.|++..+..|+.+||+.+
T Consensus 6 ~~~-~~~~q~~ai~~l~~~~~~~~~~~~l~g~tgs~kt~~~a--~~~~-~~---~~-~~lvv~~~~~~A~ql~~el~~~ 76 (664)
T 1c4o_A 6 GPS-PKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMA--KVIE-AL---GR-PALVLAPNKILAAQLAAEFREL 76 (664)
T ss_dssp SCC-CCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHH--HHHH-HH---TC-CEEEEESSHHHHHHHHHHHHHH
T ss_pred CCC-CCCCChHHHHHHHHHHhcCCCcEEEEcCCCcHHHHHHH--HHHH-Hh---CC-CEEEEecCHHHHHHHHHHHHHH
Confidence 565 59999999999999998885 57788999999998643 2222 11 34 7999999999999999999986
No 107
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=95.80 E-value=0.019 Score=64.95 Aligned_cols=98 Identities=13% Similarity=0.162 Sum_probs=44.7
Q ss_pred HHHHHHHHHhhc-ccCCcEEEEecCHHHHHHHHHHHhhcccHHHHhcCceEEEeC---------CCchhHHHHHHHHHHh
Q 004358 518 RNYGKLLVEMVS-IVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIET---------QDVVETTLALDNYRKA 587 (759)
Q Consensus 518 ~~~~~~l~~~~~-~~~gg~lv~f~Sy~~l~~~~~~~~~~~~~~~l~~~k~if~E~---------~~~~~~~~~l~~f~~~ 587 (759)
..+.+.|.+... ..++.+|||+++....+.+.+.+........ .+...+-+ ....++..+++.|++.
T Consensus 375 ~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~ 451 (556)
T 4a2p_A 375 EELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNY---IKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTS 451 (556)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGS---CCEEC----------------------------
T ss_pred HHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcce---eeeeEEEccCCcccccccCHHHHHHHHHHhccc
Confidence 455565655443 3468999999999999999999876421111 11111111 1123456678888862
Q ss_pred ccCCCCeEEEEeecCccccccccCCCCceEEEEEccCC
Q 004358 588 CDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625 (759)
Q Consensus 588 ~~~~~~aiL~gv~~G~~~EGiDf~~~~~r~vii~glPf 625 (759)
|+-.||+|+. .+++|||+|+ +..||...+|.
T Consensus 452 ---g~~~vLvaT~--~~~~GiDip~--v~~VI~~d~p~ 482 (556)
T 4a2p_A 452 ---KDNRLLIATS--VADEGIDIVQ--CNLVVLYEYSG 482 (556)
T ss_dssp -----CCEEEEEC---------------CEEEEETCCS
T ss_pred ---CceEEEEEcC--chhcCCCchh--CCEEEEeCCCC
Confidence 4556998884 8999999997 88999988774
No 108
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=95.47 E-value=0.044 Score=63.48 Aligned_cols=69 Identities=19% Similarity=0.275 Sum_probs=47.7
Q ss_pred eCCCCCCCHHHHHHHHHH---------HHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccchhhHH
Q 004358 11 YFPYDNIYPEQYSYMLEL---------KRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEME 81 (759)
Q Consensus 11 ~FPy~~~r~~Q~~~~~~v---------~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~~l~~ 81 (759)
.|||.. .+.|..-+.++ ..++ +++++++.||||+|||+..| ..+... + +.+|++||.++..
T Consensus 124 ~fp~~e-~~d~l~~i~dl~~p~~~~p~ar~l-~rk~vlv~apTGSGKT~~al----~~l~~~---~-~gl~l~PtR~LA~ 193 (677)
T 3rc3_A 124 IFPVLD-CKDDLRKISDLRIPPNWYPDARAM-QRKIIFHSGPTNSGKTYHAI----QKYFSA---K-SGVYCGPLKLLAH 193 (677)
T ss_dssp HCGGGG-CHHHHHHHTBCCCGGGGCHHHHTS-CCEEEEEECCTTSSHHHHHH----HHHHHS---S-SEEEEESSHHHHH
T ss_pred hCCCcC-CHHHHHHHhhccChhhhCHHHHhc-CCCEEEEEcCCCCCHHHHHH----HHHHhc---C-CeEEEeCHHHHHH
Confidence 477765 66666554332 1112 46789999999999998333 333222 3 5689999999999
Q ss_pred HHHHHHHh
Q 004358 82 KTLAELKL 89 (759)
Q Consensus 82 Q~~~el~~ 89 (759)
|+.+.++.
T Consensus 194 Qi~~~l~~ 201 (677)
T 3rc3_A 194 EIFEKSNA 201 (677)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998776
No 109
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=95.24 E-value=0.043 Score=63.71 Aligned_cols=110 Identities=17% Similarity=0.320 Sum_probs=76.3
Q ss_pred cCCcEEEEecCHHHHHHHHHHHhhcccHHHHhcCceEEEeCC-CchhHHHHHHHHHHhccCCCCeEEEEeecCccccccc
Q 004358 531 VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQ-DVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGID 609 (759)
Q Consensus 531 ~~gg~lv~f~Sy~~l~~~~~~~~~~~~~~~l~~~k~if~E~~-~~~~~~~~l~~f~~~~~~~~~aiL~gv~~G~~~EGiD 609 (759)
.++.+|||++|....+.+.+.+.+.|+ +..++.+. +..++..+++.|+. |+-.||+|+ ..+.+|+|
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~gi-------~~~~lh~~~~~~~R~~~~~~f~~----g~~~VLvaT--~~l~~GlD 504 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEHGI-------RARYLHHELDAFKRQALIRDLRL----GHYDCLVGI--NLLREGLD 504 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTC-------CEEEECTTCCHHHHHHHHHHHHT----TSCSEEEES--CCCCTTCC
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhcCC-------CceeecCCCCHHHHHHHHHHhhc----CCceEEEcc--ChhhcCcc
Confidence 467999999999999999999887643 22333322 23456677888875 566799887 48999999
Q ss_pred cCCCCceEEEEEccCCCCcCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhcccccccCCCeeE-EEEeec
Q 004358 610 FDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGM-MIFADK 682 (759)
Q Consensus 610 f~~~~~r~vii~glPfp~~~dp~v~ar~~~l~~~~~~~~~~~~~~~a~~~~~QaiGR~IR~~~D~g~-iillD~ 682 (759)
+|+ ++.||+.+.+.... +.....+.|.+||.=|.. .|. ++++|+
T Consensus 505 ip~--v~lVI~~d~d~~G~-------------------------p~s~~~~iQr~GRagR~~--~G~~i~~~~~ 549 (664)
T 1c4o_A 505 IPE--VSLVAILDADKEGF-------------------------LRSERSLIQTIGRAARNA--RGEVWLYADR 549 (664)
T ss_dssp CTT--EEEEEETTTTSCSG-------------------------GGSHHHHHHHHGGGTTST--TCEEEEECSS
T ss_pred CCC--CCEEEEeCCcccCC-------------------------CCCHHHHHHHHCccCcCC--CCEEEEEEcC
Confidence 996 78999998753210 011234679999999984 354 445554
No 110
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=95.23 E-value=0.041 Score=64.28 Aligned_cols=98 Identities=16% Similarity=0.202 Sum_probs=52.5
Q ss_pred HHHHHHHHHhhcc-cCCcEEEEecCHHHHHHHHHHHhhcccHHHHhcCceEEEeC---------CCchhHHHHHHHHHHh
Q 004358 518 RNYGKLLVEMVSI-VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIET---------QDVVETTLALDNYRKA 587 (759)
Q Consensus 518 ~~~~~~l~~~~~~-~~gg~lv~f~Sy~~l~~~~~~~~~~~~~~~l~~~k~if~E~---------~~~~~~~~~l~~f~~~ 587 (759)
..+.+.|.+.... .++.+|||+++....+.+.+.+...+.... .+...+-+ -...++..++++|+..
T Consensus 383 ~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~---~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~ 459 (696)
T 2ykg_A 383 EDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSF---LKPGILTGRGKTNQNTGMTLPAQKCILDAFKAS 459 (696)
T ss_dssp HHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCS---CCEEC----------------------------
T ss_pred HHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccc---cceeEEEccCCCccccCCCHHHHHHHHHHHHhc
Confidence 4455555554433 346799999999999999999887642111 12222211 1113455677888751
Q ss_pred ccCCCCeEEEEeecCccccccccCCCCceEEEEEccCC
Q 004358 588 CDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625 (759)
Q Consensus 588 ~~~~~~aiL~gv~~G~~~EGiDf~~~~~r~vii~glPf 625 (759)
|+-.||+|+. .+.+|||+++ ++.||..++|.
T Consensus 460 ---g~~~vLVaT~--v~~~GiDip~--v~~VI~~d~p~ 490 (696)
T 2ykg_A 460 ---GDHNILIATS--VADEGIDIAQ--CNLVILYEYVG 490 (696)
T ss_dssp ----CCSCSEEEE--SSCCC---CC--CSEEEEESCC-
T ss_pred ---CCccEEEEec--hhhcCCcCcc--CCEEEEeCCCC
Confidence 4567899885 7999999997 88999999874
No 111
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=95.09 E-value=0.06 Score=65.10 Aligned_cols=98 Identities=14% Similarity=0.183 Sum_probs=49.8
Q ss_pred HHHHHHHHHhhc-ccCCcEEEEecCHHHHHHHHHHHhhcccHHHHhcCceEEEeC---------CCchhHHHHHHHHHHh
Q 004358 518 RNYGKLLVEMVS-IVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIET---------QDVVETTLALDNYRKA 587 (759)
Q Consensus 518 ~~~~~~l~~~~~-~~~gg~lv~f~Sy~~l~~~~~~~~~~~~~~~l~~~k~if~E~---------~~~~~~~~~l~~f~~~ 587 (759)
..+.+.|.+... ..++.+|||+++...++.+.+.+.....+..+ +..++-+ ....++..+++.|+..
T Consensus 616 ~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~i---k~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~ 692 (936)
T 4a2w_A 616 EELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYI---KPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTS 692 (936)
T ss_dssp HHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSC---CCEEC---------------------------
T ss_pred HHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCcccccc---ceeEEecCCCcccCCCCCHHHHHHHHHHhhcc
Confidence 455666665443 34589999999999999999988764111000 1111101 1123456778888862
Q ss_pred ccCCCCeEEEEeecCccccccccCCCCceEEEEEccCC
Q 004358 588 CDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625 (759)
Q Consensus 588 ~~~~~~aiL~gv~~G~~~EGiDf~~~~~r~vii~glPf 625 (759)
|+-.||+|+. -+.||||+|+ ++.||..++|.
T Consensus 693 ---g~~~VLVaT~--~~~eGIDlp~--v~~VI~yD~p~ 723 (936)
T 4a2w_A 693 ---KDNRLLIATS--VADEGIDIVQ--CNLVVLYEYSG 723 (936)
T ss_dssp ----CCSEEEEEC--C------CCC--CSEEEEESCCS
T ss_pred ---CCeeEEEEeC--chhcCCcchh--CCEEEEeCCCC
Confidence 4556999884 8999999997 89999998875
No 112
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=95.07 E-value=0.12 Score=57.62 Aligned_cols=116 Identities=16% Similarity=0.117 Sum_probs=75.1
Q ss_pred HHHHHHHHHhhcccCCcEEEEecCHHHHHHHHHHHhhcccHHHHhcCceEEEeCCC-chhHHHHHHHHHHhccCCCC-eE
Q 004358 518 RNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQD-VVETTLALDNYRKACDCGRG-AV 595 (759)
Q Consensus 518 ~~~~~~l~~~~~~~~gg~lv~f~Sy~~l~~~~~~~~~~~~~~~l~~~k~if~E~~~-~~~~~~~l~~f~~~~~~~~~-ai 595 (759)
..+.+.+.+.. ..+..++||..+-..++.+.+.+... ...+..++.+.. ..++..++++|++. +.. .+
T Consensus 328 ~~l~~~l~~~~-~~~~k~lvF~~~~~~~~~l~~~l~~~------~~~~~~~~~g~~~~~~R~~~~~~F~~~---~~~~vi 397 (500)
T 1z63_A 328 IRTMEIIEEAL-DEGDKIAIFTQFVDMGKIIRNIIEKE------LNTEVPFLYGELSKKERDDIISKFQNN---PSVKFI 397 (500)
T ss_dssp HHHHHHHHHHH-TTTCCEEEECSCHHHHHHHHHHHHHH------HTCCCCEEETTSCHHHHHHHHHHHHHC---TTCCCC
T ss_pred HHHHHHHHHHH-ccCCcEEEEEehHHHHHHHHHHHHHh------hCCCeEEEECCCCHHHHHHHHHHhcCC---CCCCEE
Confidence 34444454443 35678999999999988888877642 012334444443 24677889999872 122 36
Q ss_pred EEEeecCccccccccCCCCceEEEEEccCCCCcCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhcccccccCCCee
Q 004358 596 FFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQAAQCVGRVIRSKADYG 675 (759)
Q Consensus 596 L~gv~~G~~~EGiDf~~~~~r~vii~glPfp~~~dp~v~ar~~~l~~~~~~~~~~~~~~~a~~~~~QaiGR~IR~~~D~g 675 (759)
|+++ ....+|+|+++ +..||+...|+-+. ...|++||+.|-....-
T Consensus 398 l~st--~~~~~Glnl~~--~~~vi~~d~~~~~~------------------------------~~~Q~~gR~~R~Gq~~~ 443 (500)
T 1z63_A 398 VLSV--KAGGFGINLTS--ANRVIHFDRWWNPA------------------------------VEDQATDRVYRIGQTRN 443 (500)
T ss_dssp EEEC--CCC-CCCCCTT--CSEEEESSCCSCC---------------------------------CHHHHTTTTTTTTSC
T ss_pred EEec--ccccCCCchhh--CCEEEEeCCCCCcc------------------------------hHHHHHHHHHHcCCCCe
Confidence 6665 47899999985 88999988776321 12499999999766554
Q ss_pred EE
Q 004358 676 MM 677 (759)
Q Consensus 676 ~i 677 (759)
+.
T Consensus 444 v~ 445 (500)
T 1z63_A 444 VI 445 (500)
T ss_dssp EE
T ss_pred eE
Confidence 43
No 113
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=94.99 E-value=0.079 Score=61.38 Aligned_cols=71 Identities=17% Similarity=0.127 Sum_probs=53.8
Q ss_pred CCCHHHH-----HHHHHHH--HHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccchhhHHHHHHHHH
Q 004358 16 NIYPEQY-----SYMLELK--RALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELK 88 (759)
Q Consensus 16 ~~r~~Q~-----~~~~~v~--~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~ 88 (759)
.|+|.|. +.+..+. +.+.+++++++.||||+|||++|+.|++..+... +. +++|.+||.++..|+.+.++
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~--~~-~~lilaPTr~La~Q~~~~l~ 291 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQK--RL-RTAVLAPTRVVAAEMAEALR 291 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHT--TC-CEEEEESSHHHHHHHHHHTT
T ss_pred ccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhC--CC-cEEEEccHHHHHHHHHHHHh
Confidence 3577777 5444333 3445789999999999999999999988765543 45 89999999999999988665
Q ss_pred h
Q 004358 89 L 89 (759)
Q Consensus 89 ~ 89 (759)
.
T Consensus 292 ~ 292 (673)
T 2wv9_A 292 G 292 (673)
T ss_dssp T
T ss_pred c
Confidence 4
No 114
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=94.80 E-value=0.046 Score=63.24 Aligned_cols=68 Identities=16% Similarity=0.179 Sum_probs=50.4
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhC-C-CCCcEEEEEccchhhHHHHHHHHHhhh
Q 004358 16 NIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSK-P-ENPVKLIYCTRTVHEMEKTLAELKLLH 91 (759)
Q Consensus 16 ~~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~-~-~~~~kvi~~T~T~~l~~Q~~~el~~l~ 91 (759)
...|.|.+.+. ..+++++|.||.|||||...+.- ++|.... + ... +|+++|.|+...+.+.+.+..+.
T Consensus 9 ~Ln~~Q~~av~------~~~~~~lV~a~aGsGKT~~l~~r-i~~l~~~~~~~~~-~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 9 SLNDKQREAVA------APRSNLLVLAGAGSGKTRVLVHR-IAWLMSVENCSPY-SIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp TCCHHHHHHHT------CCSSCEEEEECTTSCHHHHHHHH-HHHHHHTSCCCGG-GEEEEESSHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHh------CCCCCEEEEECCCCCHHHHHHHH-HHHHHHhCCCChh-hEEEEeccHHHHHHHHHHHHHHh
Confidence 35789998775 23679999999999999876554 3444332 1 124 89999999999988888777653
No 115
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=94.66 E-value=0.075 Score=63.20 Aligned_cols=98 Identities=14% Similarity=0.183 Sum_probs=48.1
Q ss_pred HHHHHHHHHhhc-ccCCcEEEEecCHHHHHHHHHHHhhcccHHHHhcCceEEEeC---------CCchhHHHHHHHHHHh
Q 004358 518 RNYGKLLVEMVS-IVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIET---------QDVVETTLALDNYRKA 587 (759)
Q Consensus 518 ~~~~~~l~~~~~-~~~gg~lv~f~Sy~~l~~~~~~~~~~~~~~~l~~~k~if~E~---------~~~~~~~~~l~~f~~~ 587 (759)
..+.+.|.+... ..++.+|||+++...++.+...+........+ +...+-+ ....++..+++.|+..
T Consensus 616 ~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~---~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~ 692 (797)
T 4a2q_A 616 EELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYI---KPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTS 692 (797)
T ss_dssp HHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSC---CCEEC---------------------------
T ss_pred HHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccc---cceEEEecCCcccCCCCCHHHHHHHHHHhhcc
Confidence 455555655433 45589999999999999999988763211000 1111101 1123456678888862
Q ss_pred ccCCCCeEEEEeecCccccccccCCCCceEEEEEccCC
Q 004358 588 CDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625 (759)
Q Consensus 588 ~~~~~~aiL~gv~~G~~~EGiDf~~~~~r~vii~glPf 625 (759)
|.-.||+|+. -+.+|||+|+ ++.||..+.|.
T Consensus 693 ---g~~~vLVaT~--~~~~GIDlp~--v~~VI~yd~p~ 723 (797)
T 4a2q_A 693 ---KDNRLLIATS--VADEGIDIVQ--CNLVVLYEYSG 723 (797)
T ss_dssp ----CCSEEEEEC--C-------CC--CSEEEEESCCS
T ss_pred ---CCceEEEEcC--chhcCCCchh--CCEEEEeCCCC
Confidence 4556999884 8999999997 89999988764
No 116
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=94.64 E-value=0.12 Score=61.46 Aligned_cols=114 Identities=13% Similarity=0.220 Sum_probs=75.8
Q ss_pred HHHHHHHhhcccCCcEEEEecCHHHHHHHHHHHhhcccHHHHhcCceEEEeCCC-chhHHHHHHHHHHhccCCCC--eEE
Q 004358 520 YGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQD-VVETTLALDNYRKACDCGRG--AVF 596 (759)
Q Consensus 520 ~~~~l~~~~~~~~gg~lv~f~Sy~~l~~~~~~~~~~~~~~~l~~~k~if~E~~~-~~~~~~~l~~f~~~~~~~~~--aiL 596 (759)
+.+.|.++ ...+..+|||...-.+++.+...+...| .+...+.+.. ...+..+++.|+.. +.+ .+|
T Consensus 561 L~~lL~~~-~~~g~kvLIFsq~~~~ld~L~~~L~~~g-------~~~~~i~G~~~~~eR~~~i~~F~~~---~~~~~v~L 629 (800)
T 3mwy_W 561 LDQLLTRL-KKDGHRVLIFSQMVRMLDILGDYLSIKG-------INFQRLDGTVPSAQRRISIDHFNSP---DSNDFVFL 629 (800)
T ss_dssp HHHHHHHH-TTTTCCEEEEESCHHHHHHHHHHHHHHT-------CCCEEESTTSCHHHHHHHHHTTSST---TCSCCCEE
T ss_pred HHHHHHHH-hhCCCeEEEEechHHHHHHHHHHHHhCC-------CCEEEEeCCCCHHHHHHHHHHhhCC---CCCceEEE
Confidence 33433333 3456789999999999999988886543 2344555443 24566788888752 122 366
Q ss_pred EEeecCccccccccCCCCceEEEEEccCCCCcCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhcccccccCCCeeE
Q 004358 597 FSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGM 676 (759)
Q Consensus 597 ~gv~~G~~~EGiDf~~~~~r~vii~glPfp~~~dp~v~ar~~~l~~~~~~~~~~~~~~~a~~~~~QaiGR~IR~~~D~g~ 676 (759)
+++ ....+|||++. +..||+...|+- | ....|++||+.|-....-|
T Consensus 630 lSt--~agg~GlNL~~--a~~VI~~D~~wn-p-----------------------------~~~~Qa~gR~~RiGQ~k~V 675 (800)
T 3mwy_W 630 LST--RAGGLGINLMT--ADTVVIFDSDWN-P-----------------------------QADLQAMARAHRIGQKNHV 675 (800)
T ss_dssp EEH--HHHTTTCCCTT--CCEEEESSCCSC-S-----------------------------HHHHHHHTTTSCSSCCSCE
T ss_pred Eec--ccccCCCCccc--cceEEEecCCCC-h-----------------------------hhHHHHHHHHHhcCCCceE
Confidence 655 37899999987 889999987762 2 2235899999996655544
Q ss_pred EE
Q 004358 677 MI 678 (759)
Q Consensus 677 ii 678 (759)
.|
T Consensus 676 ~V 677 (800)
T 3mwy_W 676 MV 677 (800)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 117
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=94.57 E-value=0.03 Score=65.99 Aligned_cols=117 Identities=16% Similarity=0.164 Sum_probs=68.4
Q ss_pred HHHHHHHhhcccCCcEEEEecCHHH--------HHHHHHHHhhcccHHHHhcCceEEEeCC-CchhHHHHHHHHHHhccC
Q 004358 520 YGKLLVEMVSIVPDGIVCFFVSYSY--------MDEIIATWNDSGILKEIMQHKLVFIETQ-DVVETTLALDNYRKACDC 590 (759)
Q Consensus 520 ~~~~l~~~~~~~~gg~lv~f~Sy~~--------l~~~~~~~~~~~~~~~l~~~k~if~E~~-~~~~~~~~l~~f~~~~~~ 590 (759)
+.+.+.+.+ ..++.++||+|+.+. .+.+++.+.+.. +...+..++.++ ...++..+++.|++
T Consensus 567 l~~~i~~~l-~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~----~~~~~v~~lHG~m~~~eR~~v~~~F~~---- 637 (780)
T 1gm5_A 567 VYEFVRQEV-MRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEV----FPEFKLGLMHGRLSQEEKDRVMLEFAE---- 637 (780)
T ss_dssp HHHHHHHHT-TTSCCBCCBCCCC--------CHHHHHHHSGGGSC----C---CBCCCCSSSCCSCSHHHHHHHTT----
T ss_pred HHHHHHHHH-hcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhh----cCCCcEEEEeCCCCHHHHHHHHHHHHC----
Confidence 334444433 345678999986543 444455444300 001122222222 12456778899986
Q ss_pred CCCeEEEEeecCccccccccCCCCceEEEEEccCCCCcCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhccccccc
Q 004358 591 GRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQAAQCVGRVIRS 670 (759)
Q Consensus 591 ~~~aiL~gv~~G~~~EGiDf~~~~~r~vii~glPfp~~~dp~v~ar~~~l~~~~~~~~~~~~~~~a~~~~~QaiGR~IR~ 670 (759)
|+-.||+|+. .+.+|||+|+ ++.||+.+.|--. ...+.|.+||+=|.
T Consensus 638 G~~~ILVaT~--vie~GIDiP~--v~~VIi~d~~r~~-----------------------------l~~l~Qr~GRaGR~ 684 (780)
T 1gm5_A 638 GRYDILVSTT--VIEVGIDVPR--ANVMVIENPERFG-----------------------------LAQLHQLRGRVGRG 684 (780)
T ss_dssp TSSSBCCCSS--CCCSCSCCTT--CCEEEBCSCSSSC-----------------------------TTHHHHHHHTSCCS
T ss_pred CCCeEEEECC--CCCccccCCC--CCEEEEeCCCCCC-----------------------------HHHHHHHhcccCcC
Confidence 5677998874 8999999998 6788887755210 12356999999997
Q ss_pred CCCeeEEEE
Q 004358 671 KADYGMMIF 679 (759)
Q Consensus 671 ~~D~g~iil 679 (759)
... |..++
T Consensus 685 g~~-g~~il 692 (780)
T 1gm5_A 685 GQE-AYCFL 692 (780)
T ss_dssp STT-CEEEC
T ss_pred CCC-CEEEE
Confidence 654 54443
No 118
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=94.18 E-value=0.15 Score=61.79 Aligned_cols=72 Identities=19% Similarity=0.210 Sum_probs=55.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccchhhHHHHHHHHHhh
Q 004358 13 PYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (759)
Q Consensus 13 Py~~~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~l 90 (759)
+++ +||.|.+.+..+.. ..+..+++.+|||+|||+.++..+...... +..+ +++|.+|| +++.|..+|+.+.
T Consensus 151 ~~~-LrpyQ~eav~~~l~--~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~-g~~~-rvLIVvP~-sLl~Qw~~E~~~~ 222 (968)
T 3dmq_A 151 RTS-LIPHQLNIAHDVGR--RHAPRVLLADEVGLGKTIEAGMILHQQLLS-GAAE-RVLIIVPE-TLQHQWLVEMLRR 222 (968)
T ss_dssp SSC-CCHHHHHHHHHHHH--SSSCEEEECCCTTSCHHHHHHHHHHHHHHT-SSCC-CEEEECCT-TTHHHHHHHHHHH
T ss_pred CCC-CcHHHHHHHHHHHH--hcCCCEEEECCCCCcHHHHHHHHHHHHHHh-CCCC-eEEEEeCH-HHHHHHHHHHHHH
Confidence 455 59999998876654 224678999999999999998776555443 2345 89999999 9999999998663
No 119
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=93.84 E-value=0.13 Score=58.43 Aligned_cols=63 Identities=19% Similarity=0.147 Sum_probs=44.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccchhhHHHHH
Q 004358 13 PYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTL 84 (759)
Q Consensus 13 Py~~~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~~l~~Q~~ 84 (759)
++. ..+.|++.+..+. .++.++|.+|+|||||...- ..+..+... +. +|+++++|....+.+-
T Consensus 187 ~~~-L~~~Q~~Av~~~~----~~~~~~I~G~pGTGKTt~i~-~l~~~l~~~--g~-~Vl~~ApT~~Aa~~L~ 249 (574)
T 3e1s_A 187 RKG-LSEEQASVLDQLA----GHRLVVLTGGPGTGKSTTTK-AVADLAESL--GL-EVGLCAPTGKAARRLG 249 (574)
T ss_dssp TTT-CCHHHHHHHHHHT----TCSEEEEECCTTSCHHHHHH-HHHHHHHHT--TC-CEEEEESSHHHHHHHH
T ss_pred cCC-CCHHHHHHHHHHH----hCCEEEEEcCCCCCHHHHHH-HHHHHHHhc--CC-eEEEecCcHHHHHHhH
Confidence 444 4799998876654 57899999999999996532 233333332 45 8999999998765543
No 120
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=93.73 E-value=0.16 Score=58.90 Aligned_cols=109 Identities=19% Similarity=0.350 Sum_probs=76.7
Q ss_pred cCCcEEEEecCHHHHHHHHHHHhhcccHHHHhcCceEEEeCC-CchhHHHHHHHHHHhccCCCCeEEEEeecCccccccc
Q 004358 531 VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQ-DVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGID 609 (759)
Q Consensus 531 ~~gg~lv~f~Sy~~l~~~~~~~~~~~~~~~l~~~k~if~E~~-~~~~~~~~l~~f~~~~~~~~~aiL~gv~~G~~~EGiD 609 (759)
.++.+|||++|....+.+.+.+.+.|+ +..++.+. +..++..+++.|+. |+-.||+|+ ..+.+|+|
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~gi-------~~~~lh~~~~~~~R~~~l~~f~~----g~~~VLVaT--~~l~~GlD 510 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEIGI-------KVNYLHSEIKTLERIEIIRDLRL----GKYDVLVGI--NLLREGLD 510 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTC-------CEEEECTTCCHHHHHHHHHHHHH----TSCSEEEES--CCCSTTCC
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhcCC-------CeEEEeCCCCHHHHHHHHHHHhc----CCeEEEEec--chhhCCcc
Confidence 456899999999999999999887642 22333322 23456778888986 566799887 48999999
Q ss_pred cCCCCceEEEEEccCCCC-cCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhcccccccCCCeeE-EEEeec
Q 004358 610 FDRHYGRLVIMFGVPFQY-TLSKILLARLEYLRDTFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGM-MIFADK 682 (759)
Q Consensus 610 f~~~~~r~vii~glPfp~-~~dp~v~ar~~~l~~~~~~~~~~~~~~~a~~~~~QaiGR~IR~~~D~g~-iillD~ 682 (759)
+|+ ++.||+.+.+... |. ....+.|.+||.-|.. .|. ++++|+
T Consensus 511 ip~--v~lVi~~d~d~~G~p~--------------------------s~~~~iQr~GRagR~~--~G~~i~~~~~ 555 (661)
T 2d7d_A 511 IPE--VSLVAILDADKEGFLR--------------------------SERSLIQTIGRAARNA--EGRVIMYADK 555 (661)
T ss_dssp CTT--EEEEEETTTTCCTTTT--------------------------SHHHHHHHHHTTTTST--TCEEEEECSS
T ss_pred cCC--CCEEEEeCcccccCCC--------------------------CHHHHHHHhCcccCCC--CCEEEEEEeC
Confidence 996 8899999976321 11 1234679999999983 354 444444
No 121
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=92.75 E-value=0.14 Score=59.46 Aligned_cols=67 Identities=18% Similarity=0.190 Sum_probs=48.2
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCC-CCCcEEEEEccchhhHHHHHHHHHhh
Q 004358 17 IYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKP-ENPVKLIYCTRTVHEMEKTLAELKLL 90 (759)
Q Consensus 17 ~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~-~~~~kvi~~T~T~~l~~Q~~~el~~l 90 (759)
+.|.|++.+.. .+++++|.|+.|||||..+..-+.......+ ... +|++.|-|+.....+-+.+...
T Consensus 3 L~~~Q~~av~~------~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~-~IL~lTfT~~Aa~em~~Rl~~~ 70 (673)
T 1uaa_A 3 LNPGQQQAVEF------VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQAR-HIAAVTFTNKAAREMKERVGQT 70 (673)
T ss_dssp CCHHHHHHHHC------CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGG-GEEEEESSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC------CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHH-HeEEEeccHHHHHHHHHHHHHH
Confidence 46889987753 3689999999999999976654333332211 234 8999999999888777766654
No 122
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=92.04 E-value=0.26 Score=57.79 Aligned_cols=67 Identities=19% Similarity=0.233 Sum_probs=48.1
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhC-C-CCCcEEEEEccchhhHHHHHHHHHhh
Q 004358 16 NIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSK-P-ENPVKLIYCTRTVHEMEKTLAELKLL 90 (759)
Q Consensus 16 ~~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~-~-~~~~kvi~~T~T~~l~~Q~~~el~~l 90 (759)
.+.|.|++.+.. .+++++|.|+.|||||..+..- ++|+... + ... +|++.|-|+.....+-+.+..+
T Consensus 11 ~Ln~~Q~~av~~------~~g~~lV~AgAGSGKT~vL~~r-i~~ll~~~~~~p~-~IL~vTFTnkAA~Em~~Rl~~~ 79 (724)
T 1pjr_A 11 HLNKEQQEAVRT------TEGPLLIMAGAGSGKTRVLTHR-IAYLMAEKHVAPW-NILAITFTNKAAREMRERVQSL 79 (724)
T ss_dssp TSCHHHHHHHHC------CSSCEEEEECTTSCHHHHHHHH-HHHHHHTTCCCGG-GEEEEESSHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHhC------CCCCEEEEEcCCCCHHHHHHHH-HHHHHHhcCCCHH-HeEEEeccHHHHHHHHHHHHHH
Confidence 357899987643 3679999999999999876544 4444432 2 224 8999999998877776666554
No 123
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=91.96 E-value=0.33 Score=46.69 Aligned_cols=33 Identities=18% Similarity=0.078 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHhC------CcEEEEcCCCCcHHHH
Q 004358 19 PEQYSYMLELKRALDAK------GHCLLEMPTGTGKTIA 51 (759)
Q Consensus 19 ~~Q~~~~~~v~~al~~~------~~~liEaPTGtGKTla 51 (759)
+.|.+.+..+.+.+... .++++.+|+|||||..
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~l 70 (202)
T 2w58_A 32 DGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYL 70 (202)
T ss_dssp HHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHH
T ss_pred hhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHH
Confidence 47777888888877765 7899999999999974
No 124
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=91.96 E-value=0.54 Score=50.35 Aligned_cols=73 Identities=11% Similarity=0.059 Sum_probs=55.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccchhhHHHHHHHHHhhh
Q 004358 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLH 91 (759)
Q Consensus 12 FPy~~~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~l~ 91 (759)
.|+.. .|.|+.++..+. ....++++.|-+.|||.....-++.++... .+. +|+++.+|..|...++++++.+.
T Consensus 160 ~p~~L-~p~Qk~il~~l~----~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~-~g~-~v~~vA~t~~qA~~vf~~i~~mi 232 (385)
T 2o0j_A 160 IKVQL-RDYQRDMLKIMS----SKRMTVCNLSRQLGKTTVVAIFLAHFVCFN-KDK-AVGILAHKGSMSAEVLDRTKQAI 232 (385)
T ss_dssp EECCC-CHHHHHHHHHHH----HSSEEEEEECSSSCHHHHHHHHHHHHHHSS-SSC-EEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCCC-CHHHHHHHHhhc----cCcEEEEEEcCcCChhHHHHHHHHHHHHhC-CCC-eEEEEeCCHHHHHHHHHHHHHHH
Confidence 56764 999999997663 456799999999999986555444334333 245 89999999999988888777654
No 125
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=91.67 E-value=0.53 Score=53.67 Aligned_cols=73 Identities=11% Similarity=0.053 Sum_probs=55.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccchhhHHHHHHHHHhhh
Q 004358 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLH 91 (759)
Q Consensus 12 FPy~~~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~l~ 91 (759)
.|+.. +|.|+.++..+ ......++++|-|+|||.....-++.++...+ +. +|+++.+|..|...++++++.+.
T Consensus 160 ~~~~l-~p~Q~~i~~~l----~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~-~~-~i~~va~t~~qA~~~~~~i~~~i 232 (592)
T 3cpe_A 160 IKVQL-RDYQRDMLKIM----SSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNK-DK-AVGILAHKGSMSAEVLDRTKQAI 232 (592)
T ss_dssp BBCCC-CHHHHHHHHHH----HHCSEEEEEECSSSCHHHHHHHHHHHHHHTSS-SC-EEEEEESSHHHHHHHHHHHHHHH
T ss_pred ccCcC-CHHHHHHHHhh----ccccEEEEEEcCccChHHHHHHHHHHHHHhCC-CC-eEEEEECCHHHHHHHHHHHHHHH
Confidence 57764 99999999776 34678999999999999865544443443332 45 89999999999999988777654
No 126
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=91.46 E-value=0.13 Score=46.81 Aligned_cols=28 Identities=14% Similarity=0.086 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhCCcEEEEcCCCCcHHHH
Q 004358 24 YMLELKRALDAKGHCLLEMPTGTGKTIA 51 (759)
Q Consensus 24 ~~~~v~~al~~~~~~liEaPTGtGKTla 51 (759)
+.+.+..+...+.++++.+|+|||||..
T Consensus 16 l~~~~~~~~~~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 16 MNREVEAAAKRTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp HHHHHHHHHTCSSCEEEEEETTCCHHHH
T ss_pred HHHHHHHHhCCCCcEEEECCCCccHHHH
Confidence 3333444445567999999999999963
No 127
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=91.42 E-value=0.34 Score=45.61 Aligned_cols=35 Identities=17% Similarity=0.107 Sum_probs=28.0
Q ss_pred CHHHHHHHHHHHHHHH-----hCCcEEEEcCCCCcHHHHH
Q 004358 18 YPEQYSYMLELKRALD-----AKGHCLLEMPTGTGKTIAL 52 (759)
Q Consensus 18 r~~Q~~~~~~v~~al~-----~~~~~liEaPTGtGKTla~ 52 (759)
.+.|.+....+.+.+. .++.+++-+|+|||||...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHH
Confidence 4688888888877664 4678999999999999743
No 128
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=91.28 E-value=0.16 Score=46.23 Aligned_cols=29 Identities=21% Similarity=0.253 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhCCcEEEEcCCCCcHHHH
Q 004358 23 SYMLELKRALDAKGHCLLEMPTGTGKTIA 51 (759)
Q Consensus 23 ~~~~~v~~al~~~~~~liEaPTGtGKTla 51 (759)
++.+.+..+...+.++++.+|+|||||..
T Consensus 12 ~~~~~~~~~a~~~~~vll~G~~GtGKt~l 40 (145)
T 3n70_A 12 QYRRRLQQLSETDIAVWLYGAPGTGRMTG 40 (145)
T ss_dssp HHHHHHHHHTTCCSCEEEESSTTSSHHHH
T ss_pred HHHHHHHHHhCCCCCEEEECCCCCCHHHH
Confidence 33444444445667999999999999974
No 129
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=90.96 E-value=0.11 Score=54.43 Aligned_cols=34 Identities=29% Similarity=0.267 Sum_probs=30.2
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHH
Q 004358 18 YPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIA 51 (759)
Q Consensus 18 r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla 51 (759)
..+|.+.+..+..++..++++++.+|+|||||..
T Consensus 29 i~g~~~~~~~l~~~l~~~~~vll~G~pGtGKT~l 62 (331)
T 2r44_A 29 VVGQKYMINRLLIGICTGGHILLEGVPGLAKTLS 62 (331)
T ss_dssp CCSCHHHHHHHHHHHHHTCCEEEESCCCHHHHHH
T ss_pred eeCcHHHHHHHHHHHHcCCeEEEECCCCCcHHHH
Confidence 4578888899999999999999999999999974
No 130
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=90.87 E-value=0.13 Score=57.31 Aligned_cols=34 Identities=18% Similarity=0.063 Sum_probs=30.1
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHH
Q 004358 18 YPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIA 51 (759)
Q Consensus 18 r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla 51 (759)
.-+|.+.+..+..++..++++++++|+|||||..
T Consensus 24 ivGq~~~i~~l~~al~~~~~VLL~GpPGtGKT~L 57 (500)
T 3nbx_X 24 LYERSHAIRLCLLAALSGESVFLLGPPGIAKSLI 57 (500)
T ss_dssp CSSCHHHHHHHHHHHHHTCEEEEECCSSSSHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCeeEeecCchHHHHHH
Confidence 3467888899999999999999999999999973
No 131
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=90.66 E-value=1.4 Score=50.44 Aligned_cols=72 Identities=19% Similarity=0.029 Sum_probs=49.8
Q ss_pred cCCcEEEEecCHHHHHHHHHHHhhcccHHHHhcCceEEEeCCCchhHHHHHHHHHHhccCCCCeEEEEeecCcccccccc
Q 004358 531 VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDF 610 (759)
Q Consensus 531 ~~gg~lv~f~Sy~~l~~~~~~~~~~~~~~~l~~~k~if~E~~~~~~~~~~l~~f~~~~~~~~~aiL~gv~~G~~~EGiDf 610 (759)
.++.+|||+++.+..+.+++.+++.++ +...+-+.-.. . +|++ +...||+|+. -+..|||+
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~g~-------~v~~lHG~l~q--~----er~~----~~~~VLVATd--VaerGIDI 455 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGLGI-------NAVAYYRGLDV--S----VIPT----IGDVVVVATD--ALMTGYTG 455 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTTTC-------CEEEECTTSCG--G----GSCS----SSCEEEEECT--THHHHCCC
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhCCC-------cEEEecCCCCH--H----HHHh----CCCcEEEECC--hHHccCCC
Confidence 578999999999999999999886542 22333332211 1 1222 3447999874 89999998
Q ss_pred CCCCceEEEEEccC
Q 004358 611 DRHYGRLVIMFGVP 624 (759)
Q Consensus 611 ~~~~~r~vii~glP 624 (759)
+ .+.||..|+.
T Consensus 456 d---V~~VI~~Gl~ 466 (666)
T 3o8b_A 456 D---FDSVIDCNTC 466 (666)
T ss_dssp C---BSEEEECCEE
T ss_pred C---CcEEEecCcc
Confidence 3 8999977743
No 132
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=90.43 E-value=3.6 Score=48.05 Aligned_cols=139 Identities=13% Similarity=0.137 Sum_probs=77.0
Q ss_pred cccHHHhhccCEEEEecCCCCCC-cchhhhhCCCCcccccceeeccCCceeeEEeecCCCCCcceec-cccCCChHHHHH
Q 004358 442 LAVKPVFDRFQSVVITSGTLSPI-DLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTK-FDMRSDPGVARN 519 (759)
Q Consensus 442 ~~~~~l~~~~~svIltSgTL~p~-~~f~~~lg~~~~~~~~~~~~~~~~~~~~~ii~~g~~~~~l~s~-f~~r~~~~~~~~ 519 (759)
..++.+|..+..+.-|+||.... +.|.+..|++.+. +|.+. |. ...+-+ +-+....+-...
T Consensus 367 It~qnyfr~Y~kl~GmTGTa~te~~ef~~iY~l~vv~-------IPtn~--p~--------~R~d~~d~v~~~~~~K~~a 429 (853)
T 2fsf_A 367 ITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTVV-------VPTNR--PM--------IRKDLPDLVYMTEAEKIQA 429 (853)
T ss_dssp EEHHHHHTTSSEEEEEECTTCCCHHHHHHHHCCEEEE-------CCCSS--CC--------CCEECCCEEESSHHHHHHH
T ss_pred eehHHHHhhhhhhhcCCCCchhHHHHHHHHhCCcEEE-------cCCCC--Cc--------eeecCCcEEEeCHHHHHHH
Confidence 44567888889999999999764 3566666654221 11110 00 000000 001122223344
Q ss_pred HHHHHHHhhcccCCcEEEEecCHHHHHHHHHHHhhcccHHHHhcCceEEEeCCCchhHHHHHHHHHHhccCCCCeEEEEe
Q 004358 520 YGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSV 599 (759)
Q Consensus 520 ~~~~l~~~~~~~~gg~lv~f~Sy~~l~~~~~~~~~~~~~~~l~~~k~if~E~~~~~~~~~~l~~f~~~~~~~~~aiL~gv 599 (759)
+.+.|.+.. ..+..+|||+.|...-+.+...++..|+ +...+-++ .......+- .++ ...|+|++|+
T Consensus 430 l~~~i~~~~-~~gqpvLVft~sie~se~Ls~~L~~~gi-------~~~vLnak-~~~rEa~ii--a~a--gr~G~VtIAT 496 (853)
T 2fsf_A 430 IIEDIKERT-AKGQPVLVGTISIEKSELVSNELTKAGI-------KHNVLNAK-FHANEAAIV--AQA--GYPAAVTIAT 496 (853)
T ss_dssp HHHHHHHHH-TTTCCEEEEESSHHHHHHHHHHHHHTTC-------CCEECCTT-CHHHHHHHH--HTT--TSTTCEEEEE
T ss_pred HHHHHHHHh-cCCCCEEEEECcHHHHHHHHHHHHHCCC-------CEEEecCC-hhHHHHHHH--Hhc--CCCCeEEEec
Confidence 444443322 3456799999999999999999987654 11112222 122222111 122 2357899988
Q ss_pred ecCccccccccCC
Q 004358 600 ARGKVAEGIDFDR 612 (759)
Q Consensus 600 ~~G~~~EGiDf~~ 612 (759)
. -...|+|++.
T Consensus 497 n--mAgRGtDI~l 507 (853)
T 2fsf_A 497 N--MAGRGTDIVL 507 (853)
T ss_dssp S--CCSSCSCCCT
T ss_pred c--cccCCcCccC
Confidence 4 6889999986
No 133
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=90.10 E-value=1.4 Score=53.31 Aligned_cols=61 Identities=15% Similarity=0.231 Sum_probs=40.8
Q ss_pred HHHHHHHHhccCCCCeEEEEeecCccccccccCCCCceEEEEEccCCCCcCCHHHHHHHHHHHHhcCCCcchhhHHHHHH
Q 004358 579 LALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALR 658 (759)
Q Consensus 579 ~~l~~f~~~~~~~~~aiL~gv~~G~~~EGiDf~~~~~r~vii~glPfp~~~dp~v~ar~~~l~~~~~~~~~~~~~~~a~~ 658 (759)
.++++|+. ++--||++| +.+.+|+|.|.- . |+.+-.|... .
T Consensus 640 ~i~~~Fk~----g~i~ILIvv--d~lltGfDiP~l--~-tlylDkpl~~------------------------------~ 680 (1038)
T 2w00_A 640 DLAQRVKN----QDIDLLIVV--GMFLTGFDAPTL--N-TLFVDKNLRY------------------------------H 680 (1038)
T ss_dssp HHHHHHHT----TSSSEEEES--STTSSSCCCTTE--E-EEEEESCCCH------------------------------H
T ss_pred HHHHHHHc----CCCeEEEEc--chHHhCcCcccc--c-EEEEccCCCc------------------------------c
Confidence 34455554 566789877 599999999984 3 4444445410 2
Q ss_pred HHHHhcccccccCC---CeeEEE
Q 004358 659 QAAQCVGRVIRSKA---DYGMMI 678 (759)
Q Consensus 659 ~~~QaiGR~IR~~~---D~g~ii 678 (759)
.+.|++||+-|... .+|.||
T Consensus 681 ~liQaIGRtnR~~~~~K~~G~IV 703 (1038)
T 2w00_A 681 GLMQAFSRTNRIYDATKTFGNIV 703 (1038)
T ss_dssp HHHHHHHTTCCCCCTTCCSEEEE
T ss_pred ceeehhhccCcCCCCCCCcEEEE
Confidence 34699999999764 478766
No 134
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=88.65 E-value=0.53 Score=58.60 Aligned_cols=65 Identities=15% Similarity=0.193 Sum_probs=46.9
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCC----CCCcEEEEEccchhhHHHHHHHHHh
Q 004358 17 IYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKP----ENPVKLIYCTRTVHEMEKTLAELKL 89 (759)
Q Consensus 17 ~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~----~~~~kvi~~T~T~~l~~Q~~~el~~ 89 (759)
+.|.|.+.+.. .+++++|.|+.|||||.+++-- +.+..... ... +|++.|-|++....+-+.+..
T Consensus 11 ~t~eQ~~~i~~------~~~~~~v~a~AGSGKT~vl~~r-i~~ll~~~~~~~~~~-~il~~Tft~~aa~e~~~ri~~ 79 (1232)
T 3u4q_A 11 WTDDQWNAIVS------TGQDILVAAAAGSGKTAVLVER-MIRKITAEENPIDVD-RLLVVTFTNASAAEMKHRIAE 79 (1232)
T ss_dssp CCHHHHHHHHC------CSSCEEEEECTTCCHHHHHHHH-HHHHHSCSSSCCCGG-GEEEECSSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC------CCCCEEEEecCCCcHHHHHHHH-HHHHHhcCCCCCCcc-ceEEEeccHHHHHHHHHHHHH
Confidence 57899987643 3679999999999999886554 33443332 224 899999999887776665444
No 135
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=88.58 E-value=1.1 Score=46.53 Aligned_cols=34 Identities=15% Similarity=0.150 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHh-----CCcEEEEcCCCCcHHHHH
Q 004358 19 PEQYSYMLELKRALDA-----KGHCLLEMPTGTGKTIAL 52 (759)
Q Consensus 19 ~~Q~~~~~~v~~al~~-----~~~~liEaPTGtGKTla~ 52 (759)
+.+.++...+.+.+.+ +.++++-+|||||||...
T Consensus 131 ~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La 169 (308)
T 2qgz_A 131 ASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLL 169 (308)
T ss_dssp HHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHH
T ss_pred hHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHH
Confidence 3566666666667765 578999999999999743
No 136
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=88.56 E-value=8.7 Score=44.94 Aligned_cols=151 Identities=14% Similarity=0.175 Sum_probs=82.6
Q ss_pred cccHHHhhccCEEEEecCCCCCC-cchhhhhCCCCcccccceeeccCCceeeEEeecCCCCCcceec-cccCCChHHHHH
Q 004358 442 LAVKPVFDRFQSVVITSGTLSPI-DLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTK-FDMRSDPGVARN 519 (759)
Q Consensus 442 ~~~~~l~~~~~svIltSgTL~p~-~~f~~~lg~~~~~~~~~~~~~~~~~~~~~ii~~g~~~~~l~s~-f~~r~~~~~~~~ 519 (759)
..++.+|..+..+.-|+||.... ..|.+..|++.+. +|.+. |. ....-+ +-+....+-...
T Consensus 358 It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l~vv~-------IPtn~--p~--------~r~d~~d~v~~~~~~K~~a 420 (844)
T 1tf5_A 358 ITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQVVT-------IPTNR--PV--------VRDDRPDLIYRTMEGKFKA 420 (844)
T ss_dssp EEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCCEEE-------CCCSS--CC--------CCEECCCEEESSHHHHHHH
T ss_pred eeHHHHHHHHhhhccCCcccchhHHHHHHHhCCceEE-------ecCCC--Cc--------ccccCCcEEEeCHHHHHHH
Confidence 34467788888999999999764 3555566664221 11110 00 000000 001122222344
Q ss_pred HHHHHHHhhcccCCcEEEEecCHHHHHHHHHHHhhcccHHHHhcCceEEEeCCCchhHHHHHHHHHHhccCCCCeEEEEe
Q 004358 520 YGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSV 599 (759)
Q Consensus 520 ~~~~l~~~~~~~~gg~lv~f~Sy~~l~~~~~~~~~~~~~~~l~~~k~if~E~~~~~~~~~~l~~f~~~~~~~~~aiL~gv 599 (759)
+.+.|.+.. ..+..+|||+.|.+.-+.+...+...|+ +...+-+. .......+- .++ ..+|+|++|+
T Consensus 421 l~~~i~~~~-~~~~pvLVft~s~~~se~Ls~~L~~~gi-------~~~vLhg~-~~~rEr~ii--~~a--g~~g~VlIAT 487 (844)
T 1tf5_A 421 VAEDVAQRY-MTGQPVLVGTVAVETSELISKLLKNKGI-------PHQVLNAK-NHEREAQII--EEA--GQKGAVTIAT 487 (844)
T ss_dssp HHHHHHHHH-HHTCCEEEEESCHHHHHHHHHHHHTTTC-------CCEEECSS-CHHHHHHHH--TTT--TSTTCEEEEE
T ss_pred HHHHHHHHH-hcCCcEEEEECCHHHHHHHHHHHHHCCC-------CEEEeeCC-ccHHHHHHH--HHc--CCCCeEEEeC
Confidence 444444332 2456799999999999999999987654 11222222 222222111 111 2357899988
Q ss_pred ecCccccccccCC-C-----CceEEEEEccC
Q 004358 600 ARGKVAEGIDFDR-H-----YGRLVIMFGVP 624 (759)
Q Consensus 600 ~~G~~~EGiDf~~-~-----~~r~vii~glP 624 (759)
. -.+.|+|++- + .+..||-.-+|
T Consensus 488 d--mAgRG~DI~l~~~V~~~ggl~VIn~d~p 516 (844)
T 1tf5_A 488 N--MAGRGTDIKLGEGVKELGGLAVVGTERH 516 (844)
T ss_dssp T--TSSTTCCCCCCTTSGGGTSEEEEESSCC
T ss_pred C--ccccCcCccccchhhhcCCcEEEEecCC
Confidence 4 7899999982 2 23466666655
No 137
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=88.54 E-value=0.44 Score=50.06 Aligned_cols=37 Identities=22% Similarity=0.285 Sum_probs=32.1
Q ss_pred CCHHHHHHHHHHHHHHHhCC--c-EEEEcCCCCcHHHHHH
Q 004358 17 IYPEQYSYMLELKRALDAKG--H-CLLEMPTGTGKTIALL 53 (759)
Q Consensus 17 ~r~~Q~~~~~~v~~al~~~~--~-~liEaPTGtGKTla~L 53 (759)
+||.|.+.+..+..++.+++ | .++.+|+|||||....
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~ 42 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIY 42 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHH
Confidence 48999999999999999875 4 8899999999997654
No 138
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=87.54 E-value=0.34 Score=49.88 Aligned_cols=34 Identities=29% Similarity=0.197 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHh----------------CCcEEEEcCCCCcHHHHH
Q 004358 19 PEQYSYMLELKRALDA----------------KGHCLLEMPTGTGKTIAL 52 (759)
Q Consensus 19 ~~Q~~~~~~v~~al~~----------------~~~~liEaPTGtGKTla~ 52 (759)
.+|.+.+..+..++.. ..++++.+|+|||||...
T Consensus 18 ~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 18 IGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHH
T ss_pred CChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHH
Confidence 3566666677666654 468999999999999743
No 139
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=87.43 E-value=0.33 Score=51.62 Aligned_cols=32 Identities=38% Similarity=0.344 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHH-----------------hCCcEEEEcCCCCcHHHH
Q 004358 20 EQYSYMLELKRALD-----------------AKGHCLLEMPTGTGKTIA 51 (759)
Q Consensus 20 ~Q~~~~~~v~~al~-----------------~~~~~liEaPTGtGKTla 51 (759)
+|.+.+..+..++. ...++++.+|||||||..
T Consensus 19 G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~l 67 (363)
T 3hws_A 19 GQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLL 67 (363)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHH
Confidence 56667777777773 346899999999999984
No 140
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=87.03 E-value=0.45 Score=44.60 Aligned_cols=34 Identities=18% Similarity=0.154 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHhC--CcEEEEcCCCCcHHHHH
Q 004358 19 PEQYSYMLELKRALDAK--GHCLLEMPTGTGKTIAL 52 (759)
Q Consensus 19 ~~Q~~~~~~v~~al~~~--~~~liEaPTGtGKTla~ 52 (759)
.++.+.+..+.+.+..+ .++++.+|+|||||...
T Consensus 25 ~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 25 IGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp CSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHH
T ss_pred ccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHH
Confidence 34556667777777655 68999999999999753
No 141
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=86.76 E-value=0.41 Score=46.77 Aligned_cols=32 Identities=25% Similarity=0.237 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHhCC---cEEEEcCCCCcHHHH
Q 004358 20 EQYSYMLELKRALDAKG---HCLLEMPTGTGKTIA 51 (759)
Q Consensus 20 ~Q~~~~~~v~~al~~~~---~~liEaPTGtGKTla 51 (759)
++.+.++.+.+++..++ .+++.+|+|+|||..
T Consensus 27 g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l 61 (250)
T 1njg_A 27 GQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSI 61 (250)
T ss_dssp SCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHH
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHH
Confidence 46677778888888775 689999999999964
No 142
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=86.64 E-value=0.44 Score=45.90 Aligned_cols=32 Identities=38% Similarity=0.471 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHhC--CcEEEEcCCCCcHHHH
Q 004358 20 EQYSYMLELKRALDAK--GHCLLEMPTGTGKTIA 51 (759)
Q Consensus 20 ~Q~~~~~~v~~al~~~--~~~liEaPTGtGKTla 51 (759)
++.+.+..+.+.+..+ .++++.+|+|||||..
T Consensus 21 g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l 54 (226)
T 2chg_A 21 GQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTAT 54 (226)
T ss_dssp SCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHH
T ss_pred CcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHH
Confidence 5667777888888776 3699999999999974
No 143
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=86.47 E-value=0.55 Score=48.89 Aligned_cols=36 Identities=8% Similarity=0.074 Sum_probs=24.5
Q ss_pred CHHHHHHHH-HHHHHHHhC--CcEEEEcCCCCcHHHHHH
Q 004358 18 YPEQYSYML-ELKRALDAK--GHCLLEMPTGTGKTIALL 53 (759)
Q Consensus 18 r~~Q~~~~~-~v~~al~~~--~~~liEaPTGtGKTla~L 53 (759)
|..|.+-+. .+..++..+ .+++|-+|+|||||...-
T Consensus 25 Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~ 63 (318)
T 3te6_A 25 QVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVN 63 (318)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHH
Confidence 444544444 555666544 589999999999997543
No 144
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=86.01 E-value=0.51 Score=44.08 Aligned_cols=34 Identities=21% Similarity=0.167 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHh--CCcEEEEcCCCCcHHHHH
Q 004358 19 PEQYSYMLELKRALDA--KGHCLLEMPTGTGKTIAL 52 (759)
Q Consensus 19 ~~Q~~~~~~v~~al~~--~~~~liEaPTGtGKTla~ 52 (759)
.++.+.+..+.+.+.. ..++++.+|+|||||...
T Consensus 25 ~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 25 IGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp CSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHH
T ss_pred hcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHH
Confidence 4555666777777765 368999999999999743
No 145
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=85.85 E-value=0.56 Score=47.26 Aligned_cols=32 Identities=16% Similarity=0.165 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHH
Q 004358 20 EQYSYMLELKRALDAKGHCLLEMPTGTGKTIA 51 (759)
Q Consensus 20 ~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla 51 (759)
.-.++.+.+..+...+.++++.+|+|||||..
T Consensus 14 ~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~l 45 (265)
T 2bjv_A 14 SFLEVLEQVSHLAPLDKPVLIIGERGTGKELI 45 (265)
T ss_dssp HHHHHHHHHHHHTTSCSCEEEECCTTSCHHHH
T ss_pred HHHHHHHHHHHHhCCCCCEEEECCCCCcHHHH
Confidence 33344444444455568999999999999964
No 146
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=85.76 E-value=0.34 Score=50.02 Aligned_cols=34 Identities=29% Similarity=0.294 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHhC-----------CcEEEEcCCCCcHHHHH
Q 004358 19 PEQYSYMLELKRALDAK-----------GHCLLEMPTGTGKTIAL 52 (759)
Q Consensus 19 ~~Q~~~~~~v~~al~~~-----------~~~liEaPTGtGKTla~ 52 (759)
.+|...+..+..++... .++++.+|+|||||...
T Consensus 20 ~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 20 VGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELA 64 (311)
T ss_dssp CSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHH
Confidence 46777777777777664 47999999999999754
No 147
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=85.44 E-value=0.6 Score=48.30 Aligned_cols=35 Identities=34% Similarity=0.405 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHhCC--cEEEEcCCCCcHHHHHH
Q 004358 19 PEQYSYMLELKRALDAKG--HCLLEMPTGTGKTIALL 53 (759)
Q Consensus 19 ~~Q~~~~~~v~~al~~~~--~~liEaPTGtGKTla~L 53 (759)
.+|.+.+..+...+..+. ++++.+|+|||||...-
T Consensus 28 ~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~ 64 (327)
T 1iqp_A 28 VGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAAL 64 (327)
T ss_dssp CSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHH
T ss_pred hCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHH
Confidence 467888888888888875 89999999999997543
No 148
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=85.40 E-value=0.72 Score=45.37 Aligned_cols=41 Identities=15% Similarity=0.143 Sum_probs=29.7
Q ss_pred HhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccch
Q 004358 33 DAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTV 77 (759)
Q Consensus 33 ~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~ 77 (759)
..+...++.+|+|+|||.++|-.+..+..+ +. +|+|.++..
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~---g~-kVli~~~~~ 50 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYA---DV-KYLVFKPKI 50 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHT---TC-CEEEEEECC
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhc---CC-EEEEEEecc
Confidence 445688889999999999888776665432 45 788876644
No 149
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=84.41 E-value=2.2 Score=41.61 Aligned_cols=33 Identities=21% Similarity=0.158 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHh--CCcEEEEcCCCCcHHHHH
Q 004358 20 EQYSYMLELKRALDA--KGHCLLEMPTGTGKTIAL 52 (759)
Q Consensus 20 ~Q~~~~~~v~~al~~--~~~~liEaPTGtGKTla~ 52 (759)
.+.+....+...+.. +.++++.+|+|||||...
T Consensus 35 ~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 35 GNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHH
Confidence 346667677666664 578999999999999754
No 150
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=83.49 E-value=3.1 Score=43.06 Aligned_cols=64 Identities=19% Similarity=0.188 Sum_probs=34.4
Q ss_pred eeeCCCCCCC--HHHHHHHHHHHHHHHhC----CcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccc
Q 004358 9 TVYFPYDNIY--PEQYSYMLELKRALDAK----GHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRT 76 (759)
Q Consensus 9 ~v~FPy~~~r--~~Q~~~~~~v~~al~~~----~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T 76 (759)
.-.+.|+.+. +.+......+...+... .++++.+|+|||||...-.-+ ...... +. ++++.+..
T Consensus 5 ~~~~~f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~-~~~~~~--~~-~~~~i~~~ 74 (324)
T 1l8q_A 5 NPKYTLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAG-NEAKKR--GY-RVIYSSAD 74 (324)
T ss_dssp CTTCCSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHH-HHHHHT--TC-CEEEEEHH
T ss_pred CCCCCcccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHH-HHHHHC--CC-EEEEEEHH
Confidence 3345555533 23444444444444443 489999999999997533221 112111 34 67776543
No 151
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=83.23 E-value=0.89 Score=47.71 Aligned_cols=35 Identities=26% Similarity=0.381 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHhCCc--EEEEcCCCCcHHHHHHH
Q 004358 20 EQYSYMLELKRALDAKGH--CLLEMPTGTGKTIALLS 54 (759)
Q Consensus 20 ~Q~~~~~~v~~al~~~~~--~liEaPTGtGKTla~L~ 54 (759)
+|.+.+..+...+..++. +++.+|+|||||....+
T Consensus 29 g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~ 65 (340)
T 1sxj_C 29 GQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVA 65 (340)
T ss_dssp SCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHH
T ss_pred CcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHH
Confidence 578888899999998864 99999999999976554
No 152
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=83.21 E-value=0.61 Score=48.82 Aligned_cols=34 Identities=32% Similarity=0.305 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHhC-------CcEEEEcCCCCcHHHHH
Q 004358 19 PEQYSYMLELKRALDAK-------GHCLLEMPTGTGKTIAL 52 (759)
Q Consensus 19 ~~Q~~~~~~v~~al~~~-------~~~liEaPTGtGKTla~ 52 (759)
-+|.+.+..+...+... .++++.+|+|||||...
T Consensus 32 iG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 32 IGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLA 72 (338)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHH
T ss_pred CChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHH
Confidence 35666666666666542 48999999999999753
No 153
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=82.95 E-value=1.6 Score=46.18 Aligned_cols=36 Identities=17% Similarity=0.077 Sum_probs=26.0
Q ss_pred CHHHHHHHHHHHHHHHhCC----cEEEEcCCCCcHHHHHH
Q 004358 18 YPEQYSYMLELKRALDAKG----HCLLEMPTGTGKTIALL 53 (759)
Q Consensus 18 r~~Q~~~~~~v~~al~~~~----~~liEaPTGtGKTla~L 53 (759)
++.+++.+..+.+.+..+. ++++.+|+|||||...-
T Consensus 49 ~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~ 88 (368)
T 3uk6_A 49 QLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAM 88 (368)
T ss_dssp CHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHH
Confidence 3455555556777777653 69999999999998543
No 154
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=82.67 E-value=1.8 Score=44.46 Aligned_cols=18 Identities=39% Similarity=0.370 Sum_probs=15.2
Q ss_pred CcEEEEcCCCCcHHHHHH
Q 004358 36 GHCLLEMPTGTGKTIALL 53 (759)
Q Consensus 36 ~~~liEaPTGtGKTla~L 53 (759)
.++++.+|+|||||...-
T Consensus 68 ~~vll~G~~GtGKT~la~ 85 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVAL 85 (309)
T ss_dssp CEEEEEECTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 379999999999997543
No 155
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=82.52 E-value=0.44 Score=50.09 Aligned_cols=35 Identities=37% Similarity=0.474 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHhC--CcEEEEcCCCCcHHHHHH
Q 004358 19 PEQYSYMLELKRALDAK--GHCLLEMPTGTGKTIALL 53 (759)
Q Consensus 19 ~~Q~~~~~~v~~al~~~--~~~liEaPTGtGKTla~L 53 (759)
-+|.+.++.+..++..+ .++++.+|+|||||...-
T Consensus 40 ~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~ 76 (353)
T 1sxj_D 40 TAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTIL 76 (353)
T ss_dssp CSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHH
T ss_pred hCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHH
Confidence 35777788888888887 689999999999997543
No 156
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=82.14 E-value=2.8 Score=44.30 Aligned_cols=17 Identities=41% Similarity=0.258 Sum_probs=14.8
Q ss_pred CcEEEEcCCCCcHHHHH
Q 004358 36 GHCLLEMPTGTGKTIAL 52 (759)
Q Consensus 36 ~~~liEaPTGtGKTla~ 52 (759)
.+++|.+|+|||||...
T Consensus 46 ~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 57999999999999754
No 157
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=81.54 E-value=0.96 Score=46.74 Aligned_cols=29 Identities=21% Similarity=0.347 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhCCcEEEEcCCCCcHHHH
Q 004358 23 SYMLELKRALDAKGHCLLEMPTGTGKTIA 51 (759)
Q Consensus 23 ~~~~~v~~al~~~~~~liEaPTGtGKTla 51 (759)
++.+.+..+.....+++|.+|||||||..
T Consensus 13 ~~~~~~~~~a~~~~~vLi~Ge~GtGKt~l 41 (304)
T 1ojl_A 13 HLLNEIAMVAPSDATVLIHGDSGTGKELV 41 (304)
T ss_dssp HHHHHHHHHCSTTSCEEEESCTTSCHHHH
T ss_pred HHHHHHHHHhCCCCcEEEECCCCchHHHH
Confidence 33444444444567999999999999974
No 158
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=81.29 E-value=0.78 Score=46.98 Aligned_cols=18 Identities=39% Similarity=0.440 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCCcHHHHH
Q 004358 35 KGHCLLEMPTGTGKTIAL 52 (759)
Q Consensus 35 ~~~~liEaPTGtGKTla~ 52 (759)
...+++.+|+|||||...
T Consensus 54 ~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CSEEEEESSSSSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 468999999999999743
No 159
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=80.66 E-value=0.58 Score=49.12 Aligned_cols=39 Identities=31% Similarity=0.335 Sum_probs=25.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH--hCCcEEEEcCCCCcHHHH
Q 004358 12 FPYDNIYPEQYSYMLELKRALD--AKGHCLLEMPTGTGKTIA 51 (759)
Q Consensus 12 FPy~~~r~~Q~~~~~~v~~al~--~~~~~liEaPTGtGKTla 51 (759)
++|.. -.+|..+...+..++. ..+++++.+|+|||||..
T Consensus 21 ~~f~~-i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~l 61 (350)
T 1g8p_A 21 FPFSA-IVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTA 61 (350)
T ss_dssp CCGGG-SCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHH
T ss_pred CCchh-ccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHH
Confidence 34444 3455555555444443 357899999999999974
No 160
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=79.68 E-value=1.3 Score=44.95 Aligned_cols=17 Identities=47% Similarity=0.556 Sum_probs=14.9
Q ss_pred CCcEEEEcCCCCcHHHH
Q 004358 35 KGHCLLEMPTGTGKTIA 51 (759)
Q Consensus 35 ~~~~liEaPTGtGKTla 51 (759)
...+++.+|+|||||..
T Consensus 51 ~~~~ll~G~~GtGKT~l 67 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLL 67 (285)
T ss_dssp CSEEEEESSSSSSHHHH
T ss_pred CCeEEEECCCCCcHHHH
Confidence 46799999999999974
No 161
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=78.36 E-value=1.6 Score=46.07 Aligned_cols=34 Identities=26% Similarity=0.260 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHhCC--c-EEEEcCCCCcHHHHH
Q 004358 19 PEQYSYMLELKRALDAKG--H-CLLEMPTGTGKTIAL 52 (759)
Q Consensus 19 ~~Q~~~~~~v~~al~~~~--~-~liEaPTGtGKTla~ 52 (759)
-+|.+.+..+..++..++ + +++.+|+|||||...
T Consensus 19 vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 19 VGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIA 55 (373)
T ss_dssp CSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHH
T ss_pred cCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHH
Confidence 457788888888888875 3 689999999999754
No 162
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=78.14 E-value=1.8 Score=43.09 Aligned_cols=34 Identities=32% Similarity=0.343 Sum_probs=22.6
Q ss_pred CHHHHHHHHHHHHHHHh-----------CCcEEEEcCCCCcHHHH
Q 004358 18 YPEQYSYMLELKRALDA-----------KGHCLLEMPTGTGKTIA 51 (759)
Q Consensus 18 r~~Q~~~~~~v~~al~~-----------~~~~liEaPTGtGKTla 51 (759)
.+.+++-+..+.+.+.. ...+++.+|+|||||..
T Consensus 17 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~l 61 (257)
T 1lv7_A 17 CDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLL 61 (257)
T ss_dssp CHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHH
T ss_pred cHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHH
Confidence 34455555555554432 35789999999999974
No 163
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=77.97 E-value=2.2 Score=42.41 Aligned_cols=34 Identities=29% Similarity=0.280 Sum_probs=22.8
Q ss_pred CHHHHHHHHHHHHHHHh-----------CCcEEEEcCCCCcHHHH
Q 004358 18 YPEQYSYMLELKRALDA-----------KGHCLLEMPTGTGKTIA 51 (759)
Q Consensus 18 r~~Q~~~~~~v~~al~~-----------~~~~liEaPTGtGKTla 51 (759)
...+++.+..+.+.+.. ...+++.+|+|||||..
T Consensus 11 ~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~l 55 (262)
T 2qz4_A 11 MHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLL 55 (262)
T ss_dssp CHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHH
T ss_pred HHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHH
Confidence 34555555555554432 24689999999999974
No 164
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=77.83 E-value=1 Score=46.37 Aligned_cols=34 Identities=35% Similarity=0.478 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHhCC--cEEEEcCCCCcHHHHHH
Q 004358 20 EQYSYMLELKRALDAKG--HCLLEMPTGTGKTIALL 53 (759)
Q Consensus 20 ~Q~~~~~~v~~al~~~~--~~liEaPTGtGKTla~L 53 (759)
+|.+.+..+.+.+..+. ++++.+|+|||||...-
T Consensus 21 g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~ 56 (319)
T 2chq_A 21 GQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAI 56 (319)
T ss_dssp SCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHH
Confidence 57788888888887764 79999999999997543
No 165
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=77.60 E-value=1.2 Score=48.91 Aligned_cols=35 Identities=37% Similarity=0.432 Sum_probs=28.7
Q ss_pred CHHHHHHH---HHHHHHHHhCC--cEEEEcCCCCcHHHHH
Q 004358 18 YPEQYSYM---LELKRALDAKG--HCLLEMPTGTGKTIAL 52 (759)
Q Consensus 18 r~~Q~~~~---~~v~~al~~~~--~~liEaPTGtGKTla~ 52 (759)
.-+|...+ ..+..++..+. ++++.+|+|||||...
T Consensus 28 ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 28 YIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLA 67 (447)
T ss_dssp CCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHH
T ss_pred hCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHH
Confidence 45788888 78888888886 5999999999999753
No 166
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=77.59 E-value=2 Score=42.34 Aligned_cols=51 Identities=22% Similarity=0.123 Sum_probs=30.4
Q ss_pred HhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccchhhHHHHHHHH
Q 004358 33 DAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAEL 87 (759)
Q Consensus 33 ~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el 87 (759)
..|...+|.|++|+|||.-.+--+...+... +. +++|.|-..+ .+++.+.+
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~--~~-~v~~~s~E~~-~~~~~~~~ 78 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAEEY--GE-PGVFVTLEER-ARDLRREM 78 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHHHHH--CC-CEEEEESSSC-HHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhc--CC-CceeecccCC-HHHHHHHH
Confidence 3456899999999999976554333333322 34 6777654433 23444433
No 167
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=77.53 E-value=1.1 Score=46.34 Aligned_cols=33 Identities=33% Similarity=0.317 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHH-------hCCcEEEEcCCCCcHHHHH
Q 004358 20 EQYSYMLELKRALD-------AKGHCLLEMPTGTGKTIAL 52 (759)
Q Consensus 20 ~Q~~~~~~v~~al~-------~~~~~liEaPTGtGKTla~ 52 (759)
+|...+..+...+. ...++++.+|+|||||...
T Consensus 16 g~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 16 GQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp SCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHH
T ss_pred CHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHH
Confidence 34444555554443 1268999999999999753
No 168
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=77.45 E-value=1.1 Score=49.44 Aligned_cols=35 Identities=20% Similarity=0.128 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHh--CCcEEEEcCCCCcHHHHHH
Q 004358 19 PEQYSYMLELKRALDA--KGHCLLEMPTGTGKTIALL 53 (759)
Q Consensus 19 ~~Q~~~~~~v~~al~~--~~~~liEaPTGtGKTla~L 53 (759)
-+|.+.+..+.+.+.. ..++++.+|+|||||...-
T Consensus 183 iGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~ 219 (468)
T 3pxg_A 183 IGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAE 219 (468)
T ss_dssp CCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHH
T ss_pred cCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHH
Confidence 4667777788888854 4689999999999998543
No 169
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=77.12 E-value=2.7 Score=46.09 Aligned_cols=33 Identities=30% Similarity=0.297 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHhC----CcEEEEcCCCCcHHHHHH
Q 004358 21 QYSYMLELKRALDAK----GHCLLEMPTGTGKTIALL 53 (759)
Q Consensus 21 Q~~~~~~v~~al~~~----~~~liEaPTGtGKTla~L 53 (759)
.++.+..+.+.+..+ .++++.+|+|||||...-
T Consensus 45 ~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 45 AREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp HHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHH
Confidence 333344455556554 479999999999997543
No 170
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=77.05 E-value=1.5 Score=45.12 Aligned_cols=17 Identities=35% Similarity=0.493 Sum_probs=14.8
Q ss_pred CCcEEEEcCCCCcHHHH
Q 004358 35 KGHCLLEMPTGTGKTIA 51 (759)
Q Consensus 35 ~~~~liEaPTGtGKTla 51 (759)
+..+++.+|+|||||..
T Consensus 49 ~~~vLL~Gp~GtGKT~l 65 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLL 65 (301)
T ss_dssp CSEEEEECSSSSSHHHH
T ss_pred CceEEEECCCCcCHHHH
Confidence 45799999999999974
No 171
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=76.72 E-value=1.8 Score=45.93 Aligned_cols=18 Identities=50% Similarity=0.684 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCCcHHHHH
Q 004358 35 KGHCLLEMPTGTGKTIAL 52 (759)
Q Consensus 35 ~~~~liEaPTGtGKTla~ 52 (759)
..++++.+|+|||||...
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 358999999999999743
No 172
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=76.71 E-value=2.6 Score=45.58 Aligned_cols=50 Identities=18% Similarity=0.189 Sum_probs=30.4
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEE
Q 004358 18 YPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYC 73 (759)
Q Consensus 18 r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~ 73 (759)
.+.+.+.+..+. ...++.++|-+|||+|||-. |-..+.+.. +..+ +|++.
T Consensus 152 ~~~~~~~L~~l~--~~~ggii~I~GpnGSGKTTl-L~allg~l~--~~~g-~I~~~ 201 (418)
T 1p9r_A 152 TAHNHDNFRRLI--KRPHGIILVTGPTGSGKSTT-LYAGLQELN--SSER-NILTV 201 (418)
T ss_dssp CHHHHHHHHHHH--TSSSEEEEEECSTTSCHHHH-HHHHHHHHC--CTTS-CEEEE
T ss_pred CHHHHHHHHHHH--HhcCCeEEEECCCCCCHHHH-HHHHHhhcC--CCCC-EEEEe
Confidence 356666666662 24567899999999999964 333333332 2234 56654
No 173
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=76.28 E-value=1.9 Score=49.28 Aligned_cols=35 Identities=31% Similarity=0.244 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHH
Q 004358 19 PEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL 53 (759)
Q Consensus 19 ~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~L 53 (759)
-+|...++.+..++..+.++++.+|+|||||...-
T Consensus 44 ~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar 78 (604)
T 3k1j_A 44 IGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQ 78 (604)
T ss_dssp CSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHH
T ss_pred ECchhhHhhccccccCCCEEEEEeCCCCCHHHHHH
Confidence 36788899999999999999999999999997543
No 174
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=74.91 E-value=2.2 Score=44.02 Aligned_cols=35 Identities=14% Similarity=0.053 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHhCC--cEEEEcCCCCcHHHHHHH
Q 004358 20 EQYSYMLELKRALDAKG--HCLLEMPTGTGKTIALLS 54 (759)
Q Consensus 20 ~Q~~~~~~v~~al~~~~--~~liEaPTGtGKTla~L~ 54 (759)
+|.+.+..+..++.+++ +.++.+|.|+|||....+
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~ 37 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLE 37 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHH
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHH
Confidence 58888999999998876 688999999999876554
No 175
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=74.87 E-value=1.9 Score=45.57 Aligned_cols=18 Identities=44% Similarity=0.429 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCCcHHHHH
Q 004358 35 KGHCLLEMPTGTGKTIAL 52 (759)
Q Consensus 35 ~~~~liEaPTGtGKTla~ 52 (759)
...+++.+|+|||||...
T Consensus 117 ~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CSEEEEESSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 357999999999999743
No 176
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=74.81 E-value=1.7 Score=51.07 Aligned_cols=33 Identities=24% Similarity=0.283 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHhCC-----------cEEEEcCCCCcHHHHH
Q 004358 20 EQYSYMLELKRALDAKG-----------HCLLEMPTGTGKTIAL 52 (759)
Q Consensus 20 ~Q~~~~~~v~~al~~~~-----------~~liEaPTGtGKTla~ 52 (759)
+|.+.+..+.+++.... ++++.+|||||||...
T Consensus 495 Gq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 495 GQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELA 538 (758)
T ss_dssp SCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHH
Confidence 57788888888886532 6999999999999754
No 177
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=74.55 E-value=2.9 Score=39.91 Aligned_cols=39 Identities=15% Similarity=0.132 Sum_probs=29.0
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccch
Q 004358 35 KGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTV 77 (759)
Q Consensus 35 ~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~ 77 (759)
+...++.+|+|+|||.++|--+..+..+ +. +|++.+++.
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~---g~-kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIA---KQ-KIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHT---TC-CEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHC---CC-EEEEEEecc
Confidence 4578889999999999888766655432 45 888887763
No 178
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=74.50 E-value=3 Score=40.86 Aligned_cols=40 Identities=25% Similarity=0.232 Sum_probs=26.4
Q ss_pred HHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEcc
Q 004358 32 LDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTR 75 (759)
Q Consensus 32 l~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~ 75 (759)
+..|...+|.+|+|+|||.-.+.-+...+.. +. +++|.+-
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~---~~-~v~~~~~ 59 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFLWNGLKM---GE-PGIYVAL 59 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHHHHT---TC-CEEEEES
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhc---CC-eEEEEEc
Confidence 4556789999999999998655444444332 34 5665543
No 179
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=74.23 E-value=2.1 Score=44.77 Aligned_cols=33 Identities=39% Similarity=0.431 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHhC-------CcEEEEcCCCCcHHHHH
Q 004358 20 EQYSYMLELKRALDAK-------GHCLLEMPTGTGKTIAL 52 (759)
Q Consensus 20 ~Q~~~~~~v~~al~~~-------~~~liEaPTGtGKTla~ 52 (759)
+|......+..++..+ .++++.+|+|+|||..+
T Consensus 29 g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 29 GQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp SCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHH
Confidence 4566666776666654 78999999999999743
No 180
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=73.01 E-value=1.9 Score=46.19 Aligned_cols=34 Identities=26% Similarity=0.188 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHH--------------hCCcEEEEcCCCCcHHHHH
Q 004358 19 PEQYSYMLELKRALD--------------AKGHCLLEMPTGTGKTIAL 52 (759)
Q Consensus 19 ~~Q~~~~~~v~~al~--------------~~~~~liEaPTGtGKTla~ 52 (759)
-+|...++.+.+.+. ...++++.+|+|||||...
T Consensus 118 iG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 118 AGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHH
T ss_pred CCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHH
Confidence 466666666666552 1368999999999999743
No 181
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=72.99 E-value=1.9 Score=44.71 Aligned_cols=35 Identities=29% Similarity=0.206 Sum_probs=24.3
Q ss_pred CHHHHHHHHHHHHHHH----------h----CCcEEEEcCCCCcHHHHH
Q 004358 18 YPEQYSYMLELKRALD----------A----KGHCLLEMPTGTGKTIAL 52 (759)
Q Consensus 18 r~~Q~~~~~~v~~al~----------~----~~~~liEaPTGtGKTla~ 52 (759)
-.+|.+.++.+.+++. . ..++++.+|+|||||...
T Consensus 20 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 20 VAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp SCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred hcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 3456666666666552 1 246999999999999743
No 182
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=72.85 E-value=7.2 Score=42.38 Aligned_cols=39 Identities=26% Similarity=0.315 Sum_probs=22.9
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccc
Q 004358 36 GHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRT 76 (759)
Q Consensus 36 ~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T 76 (759)
.++++.+|+|+|||...-+-+-......+ +. +++|.+..
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~~~~-~~-~v~~v~~~ 169 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEP-DL-RVMYITSE 169 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHHCC-SS-CEEEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCC-CC-eEEEeeHH
Confidence 48999999999999744322211122222 23 67766543
No 183
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=72.81 E-value=2.4 Score=43.57 Aligned_cols=34 Identities=18% Similarity=0.230 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHhCC--cEEEEcCCCCcHHHHHH
Q 004358 20 EQYSYMLELKRALDAKG--HCLLEMPTGTGKTIALL 53 (759)
Q Consensus 20 ~Q~~~~~~v~~al~~~~--~~liEaPTGtGKTla~L 53 (759)
+|.+.+..+.+.+..+. ++++.+|+|+|||...-
T Consensus 25 g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~ 60 (323)
T 1sxj_B 25 GNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVH 60 (323)
T ss_dssp SCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHH
Confidence 47777888888888764 69999999999997543
No 184
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=72.57 E-value=4.2 Score=38.38 Aligned_cols=39 Identities=26% Similarity=0.355 Sum_probs=27.7
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccch
Q 004358 35 KGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTV 77 (759)
Q Consensus 35 ~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~ 77 (759)
+...++.+|.|+|||..++--+..+... +. ++++.++..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~---g~-~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLG---KK-KVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT---TC-EEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHC---CC-eEEEEeecc
Confidence 5678899999999999876555444332 45 788877663
No 185
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=72.36 E-value=1.8 Score=45.89 Aligned_cols=34 Identities=29% Similarity=0.375 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHh---C---C--cEEEEcCCCCcHHHHH
Q 004358 19 PEQYSYMLELKRALDA---K---G--HCLLEMPTGTGKTIAL 52 (759)
Q Consensus 19 ~~Q~~~~~~v~~al~~---~---~--~~liEaPTGtGKTla~ 52 (759)
.++.+-+..+.+.+.. + . +++|.+|+|||||...
T Consensus 20 ~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 20 PHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTL 61 (389)
T ss_dssp TTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHH
Confidence 3444444444444443 2 4 7999999999999754
No 186
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=72.09 E-value=1.5 Score=51.54 Aligned_cols=33 Identities=33% Similarity=0.395 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHhC-----------CcEEEEcCCCCcHHHHH
Q 004358 20 EQYSYMLELKRALDAK-----------GHCLLEMPTGTGKTIAL 52 (759)
Q Consensus 20 ~Q~~~~~~v~~al~~~-----------~~~liEaPTGtGKTla~ 52 (759)
+|.+.+..+..++... .++++.+|||||||...
T Consensus 462 g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la 505 (758)
T 1r6b_X 462 GQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVT 505 (758)
T ss_dssp SCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHH
Confidence 5667777777776542 26999999999999753
No 187
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=72.01 E-value=4 Score=43.20 Aligned_cols=26 Identities=35% Similarity=0.419 Sum_probs=22.9
Q ss_pred HHHHHHHHHhCCcEEEEcCCCCcHHH
Q 004358 25 MLELKRALDAKGHCLLEMPTGTGKTI 50 (759)
Q Consensus 25 ~~~v~~al~~~~~~liEaPTGtGKTl 50 (759)
...+.-++..|+.++|-+|||+|||-
T Consensus 165 ~~~l~~~i~~G~~i~ivG~sGsGKST 190 (361)
T 2gza_A 165 MSFLRRAVQLERVIVVAGETGSGKTT 190 (361)
T ss_dssp HHHHHHHHHTTCCEEEEESSSSCHHH
T ss_pred HHHHHHHHhcCCEEEEECCCCCCHHH
Confidence 37777788899999999999999996
No 188
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=71.98 E-value=2.7 Score=46.87 Aligned_cols=34 Identities=29% Similarity=0.295 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHh-------------------CCcEEEEcCCCCcHHHHHH
Q 004358 20 EQYSYMLELKRALDA-------------------KGHCLLEMPTGTGKTIALL 53 (759)
Q Consensus 20 ~Q~~~~~~v~~al~~-------------------~~~~liEaPTGtGKTla~L 53 (759)
+|.+.++.+.+.+.. ...+++.+|+|||||...-
T Consensus 43 G~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~ 95 (516)
T 1sxj_A 43 GNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAH 95 (516)
T ss_dssp SCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHH
T ss_pred CCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHH
Confidence 455566666666654 2589999999999997543
No 189
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=71.77 E-value=3.9 Score=39.47 Aligned_cols=19 Identities=26% Similarity=0.263 Sum_probs=15.5
Q ss_pred CcEEEEcCCCCcHHHHHHH
Q 004358 36 GHCLLEMPTGTGKTIALLS 54 (759)
Q Consensus 36 ~~~liEaPTGtGKTla~L~ 54 (759)
.++++-+|+|||||...++
T Consensus 59 n~ili~GPPGtGKTt~a~a 77 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMS 77 (212)
T ss_dssp SEEEEESCGGGCHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 3699999999999976543
No 190
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=71.73 E-value=1.6 Score=43.88 Aligned_cols=17 Identities=47% Similarity=0.581 Sum_probs=14.3
Q ss_pred CcEEEEcCCCCcHHHHH
Q 004358 36 GHCLLEMPTGTGKTIAL 52 (759)
Q Consensus 36 ~~~liEaPTGtGKTla~ 52 (759)
..+++.+|+|||||...
T Consensus 45 ~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp SCCCCBCSSCSSHHHHH
T ss_pred ceEEEECCCCCcHHHHH
Confidence 46889999999999743
No 191
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=71.50 E-value=1.4 Score=46.74 Aligned_cols=34 Identities=32% Similarity=0.360 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHH------hCCcEEEEcCCCCcHHHHH
Q 004358 19 PEQYSYMLELKRALD------AKGHCLLEMPTGTGKTIAL 52 (759)
Q Consensus 19 ~~Q~~~~~~v~~al~------~~~~~liEaPTGtGKTla~ 52 (759)
.++.+-++.+...+. .+.+++|.+|+|||||...
T Consensus 22 ~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 22 PHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp TTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 455555666666552 2468999999999999743
No 192
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=71.35 E-value=2.6 Score=45.82 Aligned_cols=32 Identities=31% Similarity=0.249 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHh----------------CCcEEEEcCCCCcHHHH
Q 004358 20 EQYSYMLELKRALDA----------------KGHCLLEMPTGTGKTIA 51 (759)
Q Consensus 20 ~Q~~~~~~v~~al~~----------------~~~~liEaPTGtGKTla 51 (759)
+|.+.-..+..++.. .+++++.+|+|||||..
T Consensus 19 Gqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~l 66 (444)
T 1g41_A 19 GQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEI 66 (444)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHH
Confidence 456666666665532 36899999999999974
No 193
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=71.15 E-value=3 Score=43.24 Aligned_cols=51 Identities=10% Similarity=0.093 Sum_probs=32.0
Q ss_pred HHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccchhhHHHHHH
Q 004358 30 RALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLA 85 (759)
Q Consensus 30 ~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~~l~~Q~~~ 85 (759)
..+..|...+|.|++|+|||.-.+.-+...+.. +. +|+|.+--.+ .+|+..
T Consensus 63 gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~---g~-~vl~~slE~s-~~~l~~ 113 (315)
T 3bh0_A 63 YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN---DD-VVNLHSLEMG-KKENIK 113 (315)
T ss_dssp SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTT---TC-EEEEEESSSC-HHHHHH
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc---CC-eEEEEECCCC-HHHHHH
Confidence 344556789999999999997666555544432 35 6776654322 234444
No 194
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=70.72 E-value=1.9 Score=50.61 Aligned_cols=36 Identities=17% Similarity=0.110 Sum_probs=28.7
Q ss_pred CHHHHHHHHHHHHHHHhC--CcEEEEcCCCCcHHHHHH
Q 004358 18 YPEQYSYMLELKRALDAK--GHCLLEMPTGTGKTIALL 53 (759)
Q Consensus 18 r~~Q~~~~~~v~~al~~~--~~~liEaPTGtGKTla~L 53 (759)
--+|.+.+..+.+.+..+ .++++.+|+|||||...-
T Consensus 182 iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~ 219 (758)
T 3pxi_A 182 VIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAE 219 (758)
T ss_dssp CCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHH
T ss_pred ccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHH
Confidence 356778888888888654 599999999999998543
No 195
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=70.33 E-value=4.6 Score=42.39 Aligned_cols=35 Identities=23% Similarity=0.302 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHh------CCcEEEEcCCCCcHHHHHH
Q 004358 19 PEQYSYMLELKRALDA------KGHCLLEMPTGTGKTIALL 53 (759)
Q Consensus 19 ~~Q~~~~~~v~~al~~------~~~~liEaPTGtGKTla~L 53 (759)
.++.+-++.+.+.+.. +..++|.+|+|||||...-
T Consensus 23 ~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~ 63 (386)
T 2qby_A 23 PHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVK 63 (386)
T ss_dssp TTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHH
Confidence 3444444555555543 4689999999999997543
No 196
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=70.33 E-value=3 Score=45.54 Aligned_cols=42 Identities=12% Similarity=0.094 Sum_probs=30.6
Q ss_pred HHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccc
Q 004358 31 ALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRT 76 (759)
Q Consensus 31 al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T 76 (759)
.|..|...+|-|++|+|||.-.|--+...+.. +. +|+|.|--
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~---g~-~vl~fSlE 234 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDN---DD-VVNLHSLE 234 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT---TC-EEEEECSS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc---CC-EEEEEECC
Confidence 44556789999999999998777666665543 45 77777543
No 197
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=70.02 E-value=1.3 Score=50.56 Aligned_cols=31 Identities=26% Similarity=0.187 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHhCC-------------cEEEEcCCCCcHHH
Q 004358 20 EQYSYMLELKRALDAKG-------------HCLLEMPTGTGKTI 50 (759)
Q Consensus 20 ~Q~~~~~~v~~al~~~~-------------~~liEaPTGtGKTl 50 (759)
+|.+.-..+..++..+. ++++.+|+|||||.
T Consensus 299 G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~ 342 (595)
T 3f9v_A 299 GHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQ 342 (595)
T ss_dssp CCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHH
T ss_pred ChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHH
Confidence 45555555555555554 89999999999997
No 198
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=70.01 E-value=4.1 Score=40.91 Aligned_cols=17 Identities=41% Similarity=0.423 Sum_probs=14.7
Q ss_pred CcEEEEcCCCCcHHHHH
Q 004358 36 GHCLLEMPTGTGKTIAL 52 (759)
Q Consensus 36 ~~~liEaPTGtGKTla~ 52 (759)
.++++.+|+|||||...
T Consensus 65 ~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALA 81 (272)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 47999999999999753
No 199
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=69.61 E-value=4.3 Score=44.00 Aligned_cols=22 Identities=36% Similarity=0.412 Sum_probs=17.0
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHH
Q 004358 36 GHCLLEMPTGTGKTIALLSLITSY 59 (759)
Q Consensus 36 ~~~liEaPTGtGKTla~L~~~l~~ 59 (759)
+-+++.+|+|||||+. +-|++.
T Consensus 216 rGvLL~GPPGtGKTll--AkAiA~ 237 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLL--AKAVAA 237 (437)
T ss_dssp CEEEEESCTTSSHHHH--HHHHHH
T ss_pred CeEEEECCCCCcHHHH--HHHHHH
Confidence 5699999999999984 444543
No 200
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=69.60 E-value=3.1 Score=43.04 Aligned_cols=52 Identities=17% Similarity=0.104 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHhCC--c-EEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccch
Q 004358 19 PEQYSYMLELKRALDAKG--H-CLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTV 77 (759)
Q Consensus 19 ~~Q~~~~~~v~~al~~~~--~-~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~ 77 (759)
-+|.+.+..+.+.+..+. + +++.+|+|||||...-. ++ +.. +. ++++...+.
T Consensus 29 vg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~--la--~~l--~~-~~~~i~~~~ 83 (324)
T 3u61_B 29 ILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKA--LC--HDV--NA-DMMFVNGSD 83 (324)
T ss_dssp CCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHH--HH--HHT--TE-EEEEEETTT
T ss_pred hCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHH--HH--HHh--CC-CEEEEcccc
Confidence 467778888888888774 3 56677799999976433 22 222 23 666665443
No 201
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=69.57 E-value=3.4 Score=43.27 Aligned_cols=54 Identities=9% Similarity=0.175 Sum_probs=35.4
Q ss_pred HHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccchhhHHHHHH
Q 004358 27 ELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLA 85 (759)
Q Consensus 27 ~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~~l~~Q~~~ 85 (759)
.+...|..|...+|-|++|+|||.-.+--+...+. .+. +|+|.+--.+ -+|++.
T Consensus 38 ~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~---~g~-~Vl~fSlEms-~~ql~~ 91 (338)
T 4a1f_A 38 NYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN---DDR-GVAVFSLEMS-AEQLAL 91 (338)
T ss_dssp HHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH---TTC-EEEEEESSSC-HHHHHH
T ss_pred HHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH---cCC-eEEEEeCCCC-HHHHHH
Confidence 33345566778999999999999877766665554 245 7777665433 234444
No 202
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=69.09 E-value=3.1 Score=43.22 Aligned_cols=16 Identities=44% Similarity=0.486 Sum_probs=14.1
Q ss_pred CcEEEEcCCCCcHHHH
Q 004358 36 GHCLLEMPTGTGKTIA 51 (759)
Q Consensus 36 ~~~liEaPTGtGKTla 51 (759)
+.+++.+|+|||||..
T Consensus 46 ~~iLL~GppGtGKT~l 61 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYL 61 (322)
T ss_dssp SEEEEESSSSSCHHHH
T ss_pred ceEEEECCCCccHHHH
Confidence 5699999999999974
No 203
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=69.05 E-value=4.4 Score=43.87 Aligned_cols=22 Identities=36% Similarity=0.389 Sum_probs=16.8
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHH
Q 004358 36 GHCLLEMPTGTGKTIALLSLITSY 59 (759)
Q Consensus 36 ~~~liEaPTGtGKTla~L~~~l~~ 59 (759)
+-+++.+|+|||||+. +-|++.
T Consensus 207 rGiLL~GPPGtGKT~l--akAiA~ 228 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTML--VKAVAN 228 (428)
T ss_dssp CEEEEESCTTTTHHHH--HHHHHH
T ss_pred ceEEEECCCCCCHHHH--HHHHHH
Confidence 3489999999999974 445554
No 204
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=68.86 E-value=4.4 Score=41.37 Aligned_cols=22 Identities=14% Similarity=-0.070 Sum_probs=16.2
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHH
Q 004358 36 GHCLLEMPTGTGKTIALLSLITSY 59 (759)
Q Consensus 36 ~~~liEaPTGtGKTla~L~~~l~~ 59 (759)
..+++.+|+|||||.. +-+++.
T Consensus 37 ~~lLl~GppGtGKT~l--a~aiA~ 58 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQ--CELVFR 58 (293)
T ss_dssp SEEEEEECTTSCHHHH--HHHHHH
T ss_pred eEEEEECCCCCCHHHH--HHHHHH
Confidence 3588899999999974 444443
No 205
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=68.77 E-value=1.9 Score=51.45 Aligned_cols=33 Identities=30% Similarity=0.321 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHhC-----------CcEEEEcCCCCcHHHHH
Q 004358 20 EQYSYMLELKRALDAK-----------GHCLLEMPTGTGKTIAL 52 (759)
Q Consensus 20 ~Q~~~~~~v~~al~~~-----------~~~liEaPTGtGKTla~ 52 (759)
+|.+.|..+..++... .++++.+|||||||...
T Consensus 562 G~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA 605 (854)
T 1qvr_A 562 GQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELA 605 (854)
T ss_dssp SCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHH
T ss_pred CcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHH
Confidence 5667777777777542 37899999999999743
No 206
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=68.73 E-value=3.3 Score=45.34 Aligned_cols=55 Identities=9% Similarity=0.169 Sum_probs=34.1
Q ss_pred HHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccchhhHHHHHH
Q 004358 27 ELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLA 85 (759)
Q Consensus 27 ~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~~l~~Q~~~ 85 (759)
.+...+..|...+|-||+|+|||.-.+.-+...+... +. +|+|.+--.+- .|+..
T Consensus 195 ~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~--g~-~Vl~~s~E~s~-~~l~~ 249 (454)
T 2r6a_A 195 RMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKT--NE-NVAIFSLEMSA-QQLVM 249 (454)
T ss_dssp HHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHS--SC-CEEEEESSSCH-HHHHH
T ss_pred hhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhC--CC-cEEEEECCCCH-HHHHH
Confidence 3333445567899999999999987666555554432 44 67776644332 34443
No 207
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=68.72 E-value=2.4 Score=44.77 Aligned_cols=17 Identities=41% Similarity=0.485 Sum_probs=14.5
Q ss_pred CcEEEEcCCCCcHHHHH
Q 004358 36 GHCLLEMPTGTGKTIAL 52 (759)
Q Consensus 36 ~~~liEaPTGtGKTla~ 52 (759)
..+++.+|+|||||...
T Consensus 85 ~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCEEEECSTTSCHHHHH
T ss_pred ceEEEECCCCCcHHHHH
Confidence 46899999999999743
No 208
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=68.58 E-value=3.2 Score=45.34 Aligned_cols=56 Identities=13% Similarity=0.080 Sum_probs=34.5
Q ss_pred HHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccchhhHHHHHH
Q 004358 26 LELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLA 85 (759)
Q Consensus 26 ~~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~~l~~Q~~~ 85 (759)
..+...|..|...+|-||+|+|||.-.+--+...+... +. +|+|.+--.+ .+|+..
T Consensus 191 D~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~--g~-~vl~~slE~~-~~~l~~ 246 (444)
T 2q6t_A 191 DQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKE--GV-GVGIYSLEMP-AAQLTL 246 (444)
T ss_dssp HHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTT--CC-CEEEEESSSC-HHHHHH
T ss_pred hhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhC--CC-eEEEEECCCC-HHHHHH
Confidence 33333455667899999999999987666655555422 44 5666554332 234444
No 209
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=68.06 E-value=3 Score=43.24 Aligned_cols=28 Identities=21% Similarity=0.099 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhCCcEEEEcCCCCcHHHH
Q 004358 24 YMLELKRALDAKGHCLLEMPTGTGKTIA 51 (759)
Q Consensus 24 ~~~~v~~al~~~~~~liEaPTGtGKTla 51 (759)
.++.+.+++..+..++|.+|.|+|||..
T Consensus 20 el~~L~~~l~~~~~v~i~G~~G~GKT~L 47 (350)
T 2qen_A 20 ESRKLEESLENYPLTLLLGIRRVGKSSL 47 (350)
T ss_dssp HHHHHHHHHHHCSEEEEECCTTSSHHHH
T ss_pred HHHHHHHHHhcCCeEEEECCCcCCHHHH
Confidence 3445555666678999999999999964
No 210
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=67.83 E-value=5.7 Score=43.98 Aligned_cols=44 Identities=20% Similarity=0.345 Sum_probs=28.3
Q ss_pred hCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccch
Q 004358 34 AKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTV 77 (759)
Q Consensus 34 ~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~ 77 (759)
++.|++|-++||+|||..+-+-+++.+.....+..+++..=+..
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~ 209 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKM 209 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSS
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCch
Confidence 35799999999999998764443333333222344777765553
No 211
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=67.39 E-value=4.2 Score=44.13 Aligned_cols=44 Identities=20% Similarity=0.102 Sum_probs=32.2
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccchhhHHHHHHHHH
Q 004358 36 GHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELK 88 (759)
Q Consensus 36 ~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~ 88 (759)
+..++.||.|+|||....-- +. .. +++|.|+|+++.+.+.+.++
T Consensus 162 ~v~~I~G~aGsGKTt~I~~~----~~----~~-~~lVlTpT~~aa~~l~~kl~ 205 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEILSR----VN----FE-EDLILVPGRQAAEMIRRRAN 205 (446)
T ss_dssp EEEEEEECTTSCHHHHHHHH----CC----TT-TCEEEESCHHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHH----hc----cC-CeEEEeCCHHHHHHHHHHhh
Confidence 36789999999999864321 11 24 68999999999876666553
No 212
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=66.91 E-value=4.3 Score=45.15 Aligned_cols=29 Identities=24% Similarity=0.202 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhCCcEEEEcCCCCcHHHH
Q 004358 23 SYMLELKRALDAKGHCLLEMPTGTGKTIA 51 (759)
Q Consensus 23 ~~~~~v~~al~~~~~~liEaPTGtGKTla 51 (759)
+++..+..++..+.+++|-+|||+|||-.
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 34556666778899999999999999964
No 213
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=66.77 E-value=2.5 Score=46.74 Aligned_cols=17 Identities=47% Similarity=0.554 Sum_probs=14.8
Q ss_pred CcEEEEcCCCCcHHHHH
Q 004358 36 GHCLLEMPTGTGKTIAL 52 (759)
Q Consensus 36 ~~~liEaPTGtGKTla~ 52 (759)
..+++.+|+|||||+..
T Consensus 239 ~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 239 RGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CcEEEECcCCCCHHHHH
Confidence 57999999999999843
No 214
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=66.24 E-value=5.2 Score=43.35 Aligned_cols=39 Identities=26% Similarity=0.390 Sum_probs=26.9
Q ss_pred CCcEEEEcCCCCcHHHHH--HHHHHHHHHhCCCCCcEEEEEccchhh
Q 004358 35 KGHCLLEMPTGTGKTIAL--LSLITSYVLSKPENPVKLIYCTRTVHE 79 (759)
Q Consensus 35 ~~~~liEaPTGtGKTla~--L~~~l~~~~~~~~~~~kvi~~T~T~~l 79 (759)
..|++|-||||+|||.++ +++.+ ... +. ++||.=+.-..
T Consensus 53 ~~h~~i~G~tGsGKs~~~~~li~~~---~~~--g~-~viv~Dpkge~ 93 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLLRELAYTG---LLR--GD-RMVIVDPNGDM 93 (437)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHH---HHT--TC-EEEEEEETTHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHH---HHC--CC-cEEEEeCCCch
Confidence 469999999999999975 43322 222 45 77777665544
No 215
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=66.11 E-value=4 Score=41.58 Aligned_cols=48 Identities=8% Similarity=0.022 Sum_probs=31.8
Q ss_pred HHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEcc
Q 004358 25 MLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTR 75 (759)
Q Consensus 25 ~~~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~ 75 (759)
+..+.-.+..|+..+|-+|+|+|||.-.+.-+...... .+. +|+|.+.
T Consensus 25 Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~--~G~-~v~~~~~ 72 (296)
T 1cr0_A 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA--MGK-KVGLAML 72 (296)
T ss_dssp HHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT--SCC-CEEEEES
T ss_pred HHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH--cCC-eEEEEeC
Confidence 45555556778899999999999998665544443332 254 5766544
No 216
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=64.88 E-value=3.4 Score=47.22 Aligned_cols=58 Identities=19% Similarity=0.213 Sum_probs=40.8
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccchhhHHHH
Q 004358 17 IYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKT 83 (759)
Q Consensus 17 ~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~~l~~Q~ 83 (759)
+.+.|.+.++.+.++. .++.+|.|+-|.|||. .+--+++.+. . +++|+.||+.-.+.+
T Consensus 176 ~T~dQ~~al~~~~~~~--~~~~vlta~RGRGKSa-~lG~~~a~~~-----~-~~~vtAP~~~a~~~l 233 (671)
T 2zpa_A 176 PQPEQQQLLKQLMTMP--PGVAAVTAARGRGKSA-LAGQLISRIA-----G-RAIVTAPAKASTDVL 233 (671)
T ss_dssp CCHHHHHHHHHHTTCC--SEEEEEEECTTSSHHH-HHHHHHHHSS-----S-CEEEECSSCCSCHHH
T ss_pred CCHHHHHHHHHHHHhh--hCeEEEecCCCCCHHH-HHHHHHHHHH-----h-CcEEECCCHHHHHHH
Confidence 4678988887776654 3578999999999994 3444444432 3 579999998866543
No 217
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=64.66 E-value=4.1 Score=44.45 Aligned_cols=33 Identities=30% Similarity=0.162 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHH--------------hCCcEEEEcCCCCcHHHHH
Q 004358 20 EQYSYMLELKRALD--------------AKGHCLLEMPTGTGKTIAL 52 (759)
Q Consensus 20 ~Q~~~~~~v~~al~--------------~~~~~liEaPTGtGKTla~ 52 (759)
+|.+....+.+++. ....+++.+|+|||||+..
T Consensus 138 G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 138 GLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp SCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHH
Confidence 45556666665552 1257999999999999743
No 218
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=63.90 E-value=5.7 Score=52.86 Aligned_cols=34 Identities=24% Similarity=0.238 Sum_probs=28.5
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHH
Q 004358 18 YPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIA 51 (759)
Q Consensus 18 r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla 51 (759)
.+.-..+..-+..++..++++++.+|||||||+.
T Consensus 1250 T~DT~R~~~ll~~~l~~~~~vLL~GPpGtGKT~l 1283 (2695)
T 4akg_A 1250 TIDTIKHEKIFYDLLNSKRGIILCGPPGSGKTMI 1283 (2695)
T ss_dssp CHHHHHHHHHHHHHHHHTCEEEEECSTTSSHHHH
T ss_pred ccchHHHHHHHHHHHHCCCeEEEECCCCCCHHHH
Confidence 5556667777778888999999999999999974
No 219
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=63.88 E-value=7 Score=39.27 Aligned_cols=17 Identities=35% Similarity=0.175 Sum_probs=14.8
Q ss_pred cEEEEcCCCCcHHHHHH
Q 004358 37 HCLLEMPTGTGKTIALL 53 (759)
Q Consensus 37 ~~liEaPTGtGKTla~L 53 (759)
++++-+|+|||||+...
T Consensus 106 ~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 106 TIWLFGPATTGKTNIAE 122 (267)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 69999999999998554
No 220
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=63.85 E-value=3.2 Score=44.28 Aligned_cols=35 Identities=14% Similarity=0.059 Sum_probs=22.8
Q ss_pred CHHHHHHHHHHH-HHHHh-----CCcEEE--EcCCCCcHHHHH
Q 004358 18 YPEQYSYMLELK-RALDA-----KGHCLL--EMPTGTGKTIAL 52 (759)
Q Consensus 18 r~~Q~~~~~~v~-~al~~-----~~~~li--EaPTGtGKTla~ 52 (759)
|..+.+.+.... ..... +.+++| .+|+|+|||...
T Consensus 27 R~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 27 RRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp SCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHH
T ss_pred hHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHH
Confidence 555655555544 43322 347888 999999999743
No 221
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=63.53 E-value=4.9 Score=41.87 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhCCcEEEEcCCCCcHHH
Q 004358 24 YMLELKRALDAKGHCLLEMPTGTGKTI 50 (759)
Q Consensus 24 ~~~~v~~al~~~~~~liEaPTGtGKTl 50 (759)
+...+.-.+..|+.++|-+|||+|||-
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTT 186 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTT 186 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHH
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHH
Confidence 566777788899999999999999996
No 222
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=62.85 E-value=7.5 Score=38.39 Aligned_cols=34 Identities=29% Similarity=0.261 Sum_probs=22.1
Q ss_pred CHHHHHHHHHHHHHHHh-----------CCcEEEEcCCCCcHHHH
Q 004358 18 YPEQYSYMLELKRALDA-----------KGHCLLEMPTGTGKTIA 51 (759)
Q Consensus 18 r~~Q~~~~~~v~~al~~-----------~~~~liEaPTGtGKTla 51 (759)
.+.+.+-+..+...+.. ...+++.+|+|||||..
T Consensus 21 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl 65 (254)
T 1ixz_A 21 AEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHL 65 (254)
T ss_dssp CHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHH
T ss_pred cHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHH
Confidence 34555555555554432 23489999999999964
No 223
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=62.79 E-value=6.3 Score=35.68 Aligned_cols=18 Identities=17% Similarity=0.084 Sum_probs=15.9
Q ss_pred hCCcEEEEcCCCCcHHHH
Q 004358 34 AKGHCLLEMPTGTGKTIA 51 (759)
Q Consensus 34 ~~~~~liEaPTGtGKTla 51 (759)
.++.+++-+|+|+|||.-
T Consensus 35 ~g~~~~l~G~~G~GKTtL 52 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHL 52 (149)
T ss_dssp CCSEEEEESSSTTTTCHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 678999999999999863
No 224
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=62.59 E-value=3.4 Score=45.81 Aligned_cols=51 Identities=8% Similarity=-0.021 Sum_probs=31.8
Q ss_pred HHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccchhhHHHHHH
Q 004358 31 ALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLA 85 (759)
Q Consensus 31 al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~~l~~Q~~~ 85 (759)
.+..|...+|.||+|+|||.-.+--+...+... +. +|+|.+--.+ -+|++.
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~--g~-~vl~~s~E~s-~~~l~~ 288 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAM--GK-KVGLAMLEES-VEETAE 288 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTS--CC-CEEEEESSSC-HHHHHH
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhc--CC-cEEEEeccCC-HHHHHH
Confidence 455667899999999999987666555544321 44 5666543322 234444
No 225
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=62.48 E-value=8.5 Score=36.73 Aligned_cols=42 Identities=19% Similarity=0.201 Sum_probs=29.2
Q ss_pred HHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEE
Q 004358 28 LKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYC 73 (759)
Q Consensus 28 v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~ 73 (759)
+..+=.+++.+++-.|+|.|||-+.+--++..+.. +. ||.+.
T Consensus 21 ~~~~~~~~g~i~v~tG~GkGKTTaA~GlalRA~g~---G~-rV~~v 62 (196)
T 1g5t_A 21 VAQAQEERGIIIVFTGNGKGKTTAAFGTAARAVGH---GK-NVGVV 62 (196)
T ss_dssp ------CCCCEEEEESSSSCHHHHHHHHHHHHHHT---TC-CEEEE
T ss_pred hhhccccCceEEEECCCCCCHHHHHHHHHHHHHHC---CC-eEEEE
Confidence 33333456799999999999999999877766542 45 78887
No 226
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=62.15 E-value=8.4 Score=37.07 Aligned_cols=41 Identities=29% Similarity=0.270 Sum_probs=25.3
Q ss_pred HHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEcc
Q 004358 31 ALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTR 75 (759)
Q Consensus 31 al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~ 75 (759)
.+..|+..++-+|+|+|||.-...-+...... +. +|+|.+.
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~---~~-~v~~~~~ 59 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRD---GD-PCIYVTT 59 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHH---TC-CEEEEES
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHC---CC-eEEEEEc
Confidence 34556789999999999996544433222222 34 5666543
No 227
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=61.03 E-value=8.6 Score=37.24 Aligned_cols=39 Identities=10% Similarity=0.030 Sum_probs=28.6
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccch
Q 004358 35 KGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTV 77 (759)
Q Consensus 35 ~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~ 77 (759)
|...++.+|.|+|||.++|--+..+..+ +. +|++.++.+
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~---g~-kVli~k~~~ 66 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFA---KQ-HAIVFKPCI 66 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHT---TC-CEEEEECC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHC---CC-EEEEEEecc
Confidence 4466789999999999988777666542 45 788877654
No 228
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=60.56 E-value=4.2 Score=39.00 Aligned_cols=24 Identities=21% Similarity=0.153 Sum_probs=18.7
Q ss_pred HHHhCCcEEEEcCCCCcHHHHHHH
Q 004358 31 ALDAKGHCLLEMPTGTGKTIALLS 54 (759)
Q Consensus 31 al~~~~~~liEaPTGtGKTla~L~ 54 (759)
.+..|...++-+|+|+|||.-.+.
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~ 39 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQ 39 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHH
Confidence 344567899999999999975444
No 229
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=60.51 E-value=4.5 Score=43.81 Aligned_cols=22 Identities=32% Similarity=0.392 Sum_probs=17.0
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHH
Q 004358 36 GHCLLEMPTGTGKTIALLSLITSY 59 (759)
Q Consensus 36 ~~~liEaPTGtGKTla~L~~~l~~ 59 (759)
+.+++-+|+|||||+. +-|++.
T Consensus 216 rGvLLyGPPGTGKTll--AkAiA~ 237 (434)
T 4b4t_M 216 KGALMYGPPGTGKTLL--ARACAA 237 (434)
T ss_dssp CEEEEESCTTSSHHHH--HHHHHH
T ss_pred CeeEEECcCCCCHHHH--HHHHHH
Confidence 4699999999999974 445543
No 230
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=59.93 E-value=3.3 Score=43.25 Aligned_cols=34 Identities=29% Similarity=0.301 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHH-HhC--CcEEEEcCCCCcHHHHHH
Q 004358 20 EQYSYMLELKRAL-DAK--GHCLLEMPTGTGKTIALL 53 (759)
Q Consensus 20 ~Q~~~~~~v~~al-~~~--~~~liEaPTGtGKTla~L 53 (759)
+|.+.+..+..++ ..+ .++++.+|+|+|||...-
T Consensus 18 g~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~ 54 (354)
T 1sxj_E 18 HNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCM 54 (354)
T ss_dssp SCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHH
T ss_pred CCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHH
Confidence 5777777777777 554 369999999999997543
No 231
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=59.91 E-value=4.9 Score=42.99 Aligned_cols=22 Identities=32% Similarity=0.392 Sum_probs=17.1
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHH
Q 004358 36 GHCLLEMPTGTGKTIALLSLITSY 59 (759)
Q Consensus 36 ~~~liEaPTGtGKTla~L~~~l~~ 59 (759)
+.+++-+|+|||||+. +-|++.
T Consensus 183 rGvLL~GPPGTGKTll--AkAiA~ 204 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLL--ARAVAH 204 (405)
T ss_dssp CCEEEESCSSSSHHHH--HHHHHH
T ss_pred CceEEeCCCCCCHHHH--HHHHHH
Confidence 5799999999999974 445543
No 232
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=59.74 E-value=5.9 Score=37.98 Aligned_cols=18 Identities=39% Similarity=0.783 Sum_probs=14.8
Q ss_pred cEEEEcCCCCcHHHHHHH
Q 004358 37 HCLLEMPTGTGKTIALLS 54 (759)
Q Consensus 37 ~~liEaPTGtGKTla~L~ 54 (759)
..++.+|.|||||.....
T Consensus 7 i~l~tG~pGsGKT~~a~~ 24 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVS 24 (199)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHH
Confidence 568999999999986543
No 233
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=59.23 E-value=8.3 Score=42.35 Aligned_cols=34 Identities=32% Similarity=0.338 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHh-----------CCcEEEEcCCCCcHHHHH
Q 004358 19 PEQYSYMLELKRALDA-----------KGHCLLEMPTGTGKTIAL 52 (759)
Q Consensus 19 ~~Q~~~~~~v~~al~~-----------~~~~liEaPTGtGKTla~ 52 (759)
..+++-+..+.+.+.. .+.+++.+|+|||||+..
T Consensus 22 ~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 22 EEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLA 66 (476)
T ss_dssp HHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHH
T ss_pred HHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHH
Confidence 4444455555555542 246899999999999743
No 234
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=59.20 E-value=6.6 Score=38.27 Aligned_cols=25 Identities=20% Similarity=0.069 Sum_probs=19.2
Q ss_pred HHhCCcEEEEcCCCCcHHHHHHHHH
Q 004358 32 LDAKGHCLLEMPTGTGKTIALLSLI 56 (759)
Q Consensus 32 l~~~~~~liEaPTGtGKTla~L~~~ 56 (759)
+..|...+|-+|+|+|||.-.+.-+
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~ 45 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLA 45 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHH
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHH
Confidence 3456789999999999998655433
No 235
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=58.98 E-value=17 Score=48.55 Aligned_cols=37 Identities=16% Similarity=0.125 Sum_probs=30.5
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHH
Q 004358 18 YPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLS 54 (759)
Q Consensus 18 r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~L~ 54 (759)
-+.+..-+..+++++..+..+++.+|||+|||.++=+
T Consensus 906 ~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~ 942 (2695)
T 4akg_A 906 SEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKT 942 (2695)
T ss_dssp CHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHH
Confidence 5667777777888888888899999999999997543
No 236
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=58.60 E-value=9.9 Score=38.19 Aligned_cols=34 Identities=29% Similarity=0.261 Sum_probs=22.5
Q ss_pred CHHHHHHHHHHHHHHHh-----------CCcEEEEcCCCCcHHHH
Q 004358 18 YPEQYSYMLELKRALDA-----------KGHCLLEMPTGTGKTIA 51 (759)
Q Consensus 18 r~~Q~~~~~~v~~al~~-----------~~~~liEaPTGtGKTla 51 (759)
.+.+++-+..+...+.. ...+++.+|+|||||..
T Consensus 45 ~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl 89 (278)
T 1iy2_A 45 AEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHL 89 (278)
T ss_dssp CHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHH
T ss_pred hHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHH
Confidence 34555555566555432 13489999999999964
No 237
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=58.22 E-value=7.6 Score=52.29 Aligned_cols=33 Identities=24% Similarity=0.236 Sum_probs=26.9
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHH
Q 004358 18 YPEQYSYMLELKRALDAKGHCLLEMPTGTGKTI 50 (759)
Q Consensus 18 r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTl 50 (759)
...=..+..-+...+..++++++.+|||||||.
T Consensus 1287 T~DTvR~~~ll~~ll~~~~pvLL~GptGtGKT~ 1319 (3245)
T 3vkg_A 1287 TVDTTRHVDVLHAWLSEHRPLILCGPPGSGKTM 1319 (3245)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCEEESSTTSSHHH
T ss_pred chHHHHHHHHHHHHHHCCCcEEEECCCCCCHHH
Confidence 555556666677778889999999999999995
No 238
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=58.15 E-value=4.4 Score=38.20 Aligned_cols=23 Identities=17% Similarity=0.117 Sum_probs=18.2
Q ss_pred HHHHHhCCcEEEEcCCCCcHHHH
Q 004358 29 KRALDAKGHCLLEMPTGTGKTIA 51 (759)
Q Consensus 29 ~~al~~~~~~liEaPTGtGKTla 51 (759)
...+..+..+++++|+|+|||..
T Consensus 6 ~~~~~~~~~I~l~G~~GsGKsT~ 28 (199)
T 2bwj_A 6 MEDLRKCKIIFIIGGPGSGKGTQ 28 (199)
T ss_dssp HHHHHHSCEEEEEECTTSSHHHH
T ss_pred ccccCCCCEEEEECCCCCCHHHH
Confidence 34455677899999999999963
No 239
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=57.68 E-value=11 Score=36.89 Aligned_cols=37 Identities=22% Similarity=0.265 Sum_probs=24.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEE-EEEccch
Q 004358 37 HCLLEMPTGTGKTIALLSLITSYVLSKPENPVKL-IYCTRTV 77 (759)
Q Consensus 37 ~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kv-i~~T~T~ 77 (759)
++++-+|.|+|||...+.-+...+.. |. +| ++.+-+|
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~---G~-~V~v~d~D~q 45 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQ---GV-RVMAGVVETH 45 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHT---TC-CEEEEECCCT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHC---CC-CEEEEEeCCC
Confidence 58889999999999877655544432 34 55 4444443
No 240
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=56.97 E-value=12 Score=41.94 Aligned_cols=43 Identities=21% Similarity=0.384 Sum_probs=28.8
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccch
Q 004358 35 KGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTV 77 (759)
Q Consensus 35 ~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~ 77 (759)
..|++|-+.||+|||.++-.-+++.+........++++.=+..
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpKg 256 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKM 256 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSS
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCCh
Confidence 4699999999999998765544444433222234788776654
No 241
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=56.89 E-value=12 Score=36.01 Aligned_cols=35 Identities=23% Similarity=0.185 Sum_probs=25.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHH
Q 004358 14 YDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIAL 52 (759)
Q Consensus 14 y~~~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~ 52 (759)
..|-..+|....+. +..|+.+.|-+|.|+|||.-+
T Consensus 5 i~pk~~g~~~~l~~----i~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 5 IRPKTLGQKHYVDA----IDTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp CCCCSHHHHHHHHH----HHHCSEEEEECCTTSSTTHHH
T ss_pred cccCCHhHHHHHHh----ccCCCEEEEECCCCCCHHHHH
Confidence 34445667665544 578999999999999999643
No 242
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=56.59 E-value=4.4 Score=37.85 Aligned_cols=18 Identities=17% Similarity=0.211 Sum_probs=15.2
Q ss_pred hCCcEEEEcCCCCcHHHH
Q 004358 34 AKGHCLLEMPTGTGKTIA 51 (759)
Q Consensus 34 ~~~~~liEaPTGtGKTla 51 (759)
.|+.++|.+|+|+|||--
T Consensus 4 ~g~~i~i~GpsGsGKSTL 21 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHI 21 (180)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 367889999999999963
No 243
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=55.87 E-value=11 Score=38.40 Aligned_cols=37 Identities=30% Similarity=0.351 Sum_probs=22.6
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEc
Q 004358 35 KGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCT 74 (759)
Q Consensus 35 ~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T 74 (759)
++.+++-+|+|+|||.....-+..+... .|. +|.+..
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~--~G~-~V~lv~ 141 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLE--KHK-KIAFIT 141 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHT--TCC-CEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHh--cCC-EEEEEe
Confidence 4578888999999997544433333221 254 566553
No 244
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=55.13 E-value=4.8 Score=38.66 Aligned_cols=18 Identities=28% Similarity=0.322 Sum_probs=15.3
Q ss_pred hCCcEEEEcCCCCcHHHH
Q 004358 34 AKGHCLLEMPTGTGKTIA 51 (759)
Q Consensus 34 ~~~~~liEaPTGtGKTla 51 (759)
.+..+++.+|+|+|||-.
T Consensus 7 ~g~~i~l~GpsGsGKsTl 24 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTV 24 (208)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECcCCCCHHHH
Confidence 467889999999999963
No 245
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=54.90 E-value=6.3 Score=46.13 Aligned_cols=34 Identities=24% Similarity=0.130 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHh--CCcEEEEcCCCCcHHHHH
Q 004358 19 PEQYSYMLELKRALDA--KGHCLLEMPTGTGKTIAL 52 (759)
Q Consensus 19 ~~Q~~~~~~v~~al~~--~~~~liEaPTGtGKTla~ 52 (759)
-+|.+.+..+.+.+.. +.++++.+|+|||||...
T Consensus 189 iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la 224 (758)
T 1r6b_X 189 IGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIA 224 (758)
T ss_dssp CSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHH
T ss_pred cCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHH
Confidence 3456667777787765 468999999999999754
No 246
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=54.85 E-value=6.3 Score=42.45 Aligned_cols=40 Identities=23% Similarity=0.174 Sum_probs=25.7
Q ss_pred CHHHHHHHHHHHHH-HHh-----------CCcEEEEcCCCCcHHHHHHHHHHHH
Q 004358 18 YPEQYSYMLELKRA-LDA-----------KGHCLLEMPTGTGKTIALLSLITSY 59 (759)
Q Consensus 18 r~~Q~~~~~~v~~a-l~~-----------~~~~liEaPTGtGKTla~L~~~l~~ 59 (759)
...|++-+.+.... +.+ .+.+++-+|+|||||+. +-|++.
T Consensus 187 ld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlL--AkAiA~ 238 (437)
T 4b4t_I 187 LESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLL--AKAVAN 238 (437)
T ss_dssp CHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHH--HHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHH--HHHHHH
Confidence 35666666555543 322 24699999999999984 444543
No 247
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=54.54 E-value=3 Score=43.30 Aligned_cols=30 Identities=20% Similarity=0.108 Sum_probs=21.2
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHH
Q 004358 18 YPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIAL 52 (759)
Q Consensus 18 r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~ 52 (759)
|+.+.+.+. + +.. ..++|.+|.|+|||...
T Consensus 18 R~~el~~L~---~-l~~-~~v~i~G~~G~GKT~L~ 47 (357)
T 2fna_A 18 REKEIEKLK---G-LRA-PITLVLGLRRTGKSSII 47 (357)
T ss_dssp CHHHHHHHH---H-TCS-SEEEEEESTTSSHHHHH
T ss_pred hHHHHHHHH---H-hcC-CcEEEECCCCCCHHHHH
Confidence 555555443 3 444 69999999999999643
No 248
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=54.24 E-value=19 Score=36.06 Aligned_cols=26 Identities=31% Similarity=0.369 Sum_probs=20.3
Q ss_pred HHhCCcEEEEcCCCCcHHHHHHHHHH
Q 004358 32 LDAKGHCLLEMPTGTGKTIALLSLIT 57 (759)
Q Consensus 32 l~~~~~~liEaPTGtGKTla~L~~~l 57 (759)
+..|...+|-+|+|+|||.-.+.-+.
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 44567899999999999986665444
No 249
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=53.39 E-value=5.4 Score=38.17 Aligned_cols=17 Identities=18% Similarity=0.333 Sum_probs=15.0
Q ss_pred hCCcEEEEcCCCCcHHH
Q 004358 34 AKGHCLLEMPTGTGKTI 50 (759)
Q Consensus 34 ~~~~~liEaPTGtGKTl 50 (759)
.++.++|.+|+|+|||-
T Consensus 18 ~g~~ivl~GPSGaGKsT 34 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSH 34 (197)
T ss_dssp SCCEEEEECCTTSSHHH
T ss_pred CCCEEEEECcCCCCHHH
Confidence 46789999999999996
No 250
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=53.19 E-value=4 Score=40.98 Aligned_cols=26 Identities=38% Similarity=0.509 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhCCcEEEEcCCCCcHHHH
Q 004358 24 YMLELKRALDAKGHCLLEMPTGTGKTIA 51 (759)
Q Consensus 24 ~~~~v~~al~~~~~~liEaPTGtGKTla 51 (759)
....+. +..|+.++|-+|||+|||-.
T Consensus 16 vl~~i~--i~~g~~v~i~Gp~GsGKSTl 41 (261)
T 2eyu_A 16 KVLELC--HRKMGLILVTGPTGSGKSTT 41 (261)
T ss_dssp HHHHGG--GCSSEEEEEECSTTCSHHHH
T ss_pred HHHHHh--hCCCCEEEEECCCCccHHHH
Confidence 344444 56778999999999999963
No 251
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=53.09 E-value=6.1 Score=42.99 Aligned_cols=22 Identities=36% Similarity=0.431 Sum_probs=17.0
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHH
Q 004358 36 GHCLLEMPTGTGKTIALLSLITSY 59 (759)
Q Consensus 36 ~~~liEaPTGtGKTla~L~~~l~~ 59 (759)
+-+|+.+|+|||||+. +-|++.
T Consensus 244 rGILLyGPPGTGKTlL--AkAiA~ 265 (467)
T 4b4t_H 244 KGILLYGPPGTGKTLC--ARAVAN 265 (467)
T ss_dssp SEEEECSCTTSSHHHH--HHHHHH
T ss_pred CceEeeCCCCCcHHHH--HHHHHh
Confidence 5699999999999974 445543
No 252
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=53.07 E-value=13 Score=35.49 Aligned_cols=38 Identities=13% Similarity=0.169 Sum_probs=27.8
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccc
Q 004358 35 KGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRT 76 (759)
Q Consensus 35 ~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T 76 (759)
++..++-+|.|+|||.-+|-.+-.|..+ +. +|+|.|+.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~---~~-kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIA---QY-KCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHT---TC-CEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHc---CC-eEEEEccc
Confidence 5688999999999997766665444432 35 78888764
No 253
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=52.96 E-value=4.9 Score=38.13 Aligned_cols=19 Identities=26% Similarity=0.524 Sum_probs=16.1
Q ss_pred HhCCcEEEEcCCCCcHHHH
Q 004358 33 DAKGHCLLEMPTGTGKTIA 51 (759)
Q Consensus 33 ~~~~~~liEaPTGtGKTla 51 (759)
..|..+.|-+|+|+|||-.
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl 23 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSL 23 (205)
T ss_dssp CCCCEEEEECCTTSCHHHH
T ss_pred CCCcEEEEECcCCCCHHHH
Confidence 3577899999999999963
No 254
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=52.90 E-value=5.5 Score=37.83 Aligned_cols=33 Identities=21% Similarity=0.076 Sum_probs=16.1
Q ss_pred HHHHHHHH-HHHHHHHhCCcEEEEcCCCCcHHHH
Q 004358 19 PEQYSYML-ELKRALDAKGHCLLEMPTGTGKTIA 51 (759)
Q Consensus 19 ~~Q~~~~~-~v~~al~~~~~~liEaPTGtGKTla 51 (759)
|++..+.. .|.-.+..+..+++.+|+|+|||..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl 41 (199)
T 3vaa_A 8 SSGVDLGTENLYFQSNAMVRIFLTGYMGAGKTTL 41 (199)
T ss_dssp ----------------CCCEEEEECCTTSCHHHH
T ss_pred CCCCCCCCCceeEecCCCCEEEEEcCCCCCHHHH
Confidence 34444332 2333455678999999999999974
No 255
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=52.74 E-value=3.4 Score=42.54 Aligned_cols=27 Identities=19% Similarity=0.219 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhCCcEEEEcCCCCcHHH
Q 004358 24 YMLELKRALDAKGHCLLEMPTGTGKTI 50 (759)
Q Consensus 24 ~~~~v~~al~~~~~~liEaPTGtGKTl 50 (759)
....|--.+..|+.+.|-+|+|+|||.
T Consensus 115 vL~~vsl~i~~Ge~vaIvGpsGsGKST 141 (305)
T 2v9p_A 115 ALKLWLKGIPKKNCLAFIGPPNTGKSM 141 (305)
T ss_dssp HHHHHHHTCTTCSEEEEECSSSSSHHH
T ss_pred hhccceEEecCCCEEEEECCCCCcHHH
Confidence 455555566778899999999999986
No 256
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=52.58 E-value=17 Score=44.89 Aligned_cols=49 Identities=29% Similarity=0.379 Sum_probs=32.7
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHHHhC--------C-CCCcEEEEEccchhhHHHHHH
Q 004358 36 GHCLLEMPTGTGKTIALLSLITSYVLSK--------P-ENPVKLIYCTRTVHEMEKTLA 85 (759)
Q Consensus 36 ~~~liEaPTGtGKTla~L~~~l~~~~~~--------~-~~~~kvi~~T~T~~l~~Q~~~ 85 (759)
+..+|+|+-|||||.++-.=.+...... + ... +|++.|=|++-...+-+
T Consensus 17 g~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~-~ILvvTFT~aAA~EMr~ 74 (1180)
T 1w36_B 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVE-ELLVVTFTEAATAELRG 74 (1180)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGG-GEEEEESCHHHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHH-HEEEEeccHHHHHHHHH
Confidence 4569999999999987554444444321 1 123 89999999876544433
No 257
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=51.81 E-value=5.2 Score=37.92 Aligned_cols=18 Identities=28% Similarity=0.374 Sum_probs=15.7
Q ss_pred HhCCcEEEEcCCCCcHHH
Q 004358 33 DAKGHCLLEMPTGTGKTI 50 (759)
Q Consensus 33 ~~~~~~liEaPTGtGKTl 50 (759)
..+..+++.+|+|+|||.
T Consensus 4 ~~g~~i~l~G~~GsGKST 21 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGT 21 (207)
T ss_dssp CCCCEEEEECSTTSCHHH
T ss_pred CCCCEEEEECCCCCCHHH
Confidence 457789999999999986
No 258
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=51.80 E-value=5.5 Score=36.32 Aligned_cols=14 Identities=29% Similarity=0.347 Sum_probs=12.7
Q ss_pred cEEEEcCCCCcHHH
Q 004358 37 HCLLEMPTGTGKTI 50 (759)
Q Consensus 37 ~~liEaPTGtGKTl 50 (759)
.+++.+|+|+|||.
T Consensus 3 ~I~l~G~~GsGKsT 16 (179)
T 3lw7_A 3 VILITGMPGSGKSE 16 (179)
T ss_dssp EEEEECCTTSCHHH
T ss_pred EEEEECCCCCCHHH
Confidence 57899999999997
No 259
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=51.72 E-value=14 Score=40.88 Aligned_cols=34 Identities=29% Similarity=0.261 Sum_probs=23.4
Q ss_pred CHHHHHHHHHHHHHHHhC-----------CcEEEEcCCCCcHHHH
Q 004358 18 YPEQYSYMLELKRALDAK-----------GHCLLEMPTGTGKTIA 51 (759)
Q Consensus 18 r~~Q~~~~~~v~~al~~~-----------~~~liEaPTGtGKTla 51 (759)
...+++-+..+...+.+. ..+++.+|+|||||+.
T Consensus 36 ~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtL 80 (499)
T 2dhr_A 36 AEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHL 80 (499)
T ss_dssp CHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHH
T ss_pred cHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHH
Confidence 455555566666655431 3489999999999974
No 260
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=51.48 E-value=14 Score=38.05 Aligned_cols=24 Identities=21% Similarity=0.083 Sum_probs=18.4
Q ss_pred hCCcEEEEcCCCCcHHHHHHHHHH
Q 004358 34 AKGHCLLEMPTGTGKTIALLSLIT 57 (759)
Q Consensus 34 ~~~~~liEaPTGtGKTla~L~~~l 57 (759)
.|...+|.+|+|+|||.-.+.-+.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~ 129 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSV 129 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHH
Confidence 356889999999999986555443
No 261
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=51.34 E-value=4.6 Score=38.60 Aligned_cols=20 Identities=20% Similarity=0.263 Sum_probs=16.3
Q ss_pred HHHhCCcEEEEcCCCCcHHH
Q 004358 31 ALDAKGHCLLEMPTGTGKTI 50 (759)
Q Consensus 31 al~~~~~~liEaPTGtGKTl 50 (759)
.+..+..+++.+|+|+|||-
T Consensus 8 ~~~~~~~i~l~G~sGsGKsT 27 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGT 27 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHH
T ss_pred ccccCCEEEEECCCCCCHHH
Confidence 34567789999999999996
No 262
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=50.91 E-value=6.3 Score=36.72 Aligned_cols=16 Identities=19% Similarity=0.235 Sum_probs=14.3
Q ss_pred CCcEEEEcCCCCcHHH
Q 004358 35 KGHCLLEMPTGTGKTI 50 (759)
Q Consensus 35 ~~~~liEaPTGtGKTl 50 (759)
+..+++++|+|+|||.
T Consensus 3 ~~~I~i~G~~GsGKsT 18 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTT 18 (192)
T ss_dssp CCEEEEECCTTSCHHH
T ss_pred CeEEEEECCCCCCHHH
Confidence 4678999999999996
No 263
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=50.89 E-value=12 Score=39.45 Aligned_cols=36 Identities=19% Similarity=0.289 Sum_probs=26.0
Q ss_pred CHHHHHHHHHH-----HHHHHhCCc--EEEEcCCCCcHHHHHH
Q 004358 18 YPEQYSYMLEL-----KRALDAKGH--CLLEMPTGTGKTIALL 53 (759)
Q Consensus 18 r~~Q~~~~~~v-----~~al~~~~~--~liEaPTGtGKTla~L 53 (759)
...|.++-+.+ ..+++.|.+ ++.=+.||+|||....
T Consensus 61 ~~~Q~~Vy~~~~~plv~~~~~~G~n~tifAYGqTGSGKTyTM~ 103 (360)
T 1ry6_A 61 TVDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTML 103 (360)
T ss_dssp TCCHHHHHHHHTHHHHHHHHHHCCEEEEEEECCTTSSHHHHHH
T ss_pred CCCHHHHHHHHhhhhhhhhccCCceeEEEeeCCCCCCCCEEEe
Confidence 56788877763 345555654 5788999999998764
No 264
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=50.53 E-value=7.6 Score=40.47 Aligned_cols=16 Identities=38% Similarity=0.322 Sum_probs=14.0
Q ss_pred CcEEEEcCCCCcHHHH
Q 004358 36 GHCLLEMPTGTGKTIA 51 (759)
Q Consensus 36 ~~~liEaPTGtGKTla 51 (759)
..++|-+|||+|||-.
T Consensus 41 ~lIvI~GPTgsGKTtL 56 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRL 56 (339)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 4789999999999964
No 265
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=49.44 E-value=8.2 Score=39.81 Aligned_cols=17 Identities=29% Similarity=0.311 Sum_probs=13.9
Q ss_pred CCcEEEEcCCCCcHHHH
Q 004358 35 KGHCLLEMPTGTGKTIA 51 (759)
Q Consensus 35 ~~~~liEaPTGtGKTla 51 (759)
+..++|-+|||+|||-.
T Consensus 3 ~~~i~i~GptgsGKt~l 19 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKT 19 (322)
T ss_dssp CEEEEEECCTTSCHHHH
T ss_pred CcEEEEECCCcCCHHHH
Confidence 34678899999999964
No 266
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=48.98 E-value=7.2 Score=37.37 Aligned_cols=16 Identities=25% Similarity=0.293 Sum_probs=13.3
Q ss_pred CcEEEEcCCCCcHHHH
Q 004358 36 GHCLLEMPTGTGKTIA 51 (759)
Q Consensus 36 ~~~liEaPTGtGKTla 51 (759)
..++|-+|||+|||-.
T Consensus 35 ~~ilI~GpsGsGKStL 50 (205)
T 2qmh_A 35 LGVLITGDSGVGKSET 50 (205)
T ss_dssp EEEEEECCCTTTTHHH
T ss_pred EEEEEECCCCCCHHHH
Confidence 4578999999999853
No 267
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=48.98 E-value=7.1 Score=36.31 Aligned_cols=17 Identities=29% Similarity=0.190 Sum_probs=14.7
Q ss_pred CCcEEEEcCCCCcHHHH
Q 004358 35 KGHCLLEMPTGTGKTIA 51 (759)
Q Consensus 35 ~~~~liEaPTGtGKTla 51 (759)
..++++.+|+|+|||..
T Consensus 5 ~~~i~l~G~~GsGKst~ 21 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSV 21 (185)
T ss_dssp CCEEEEECSTTSSHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 46889999999999963
No 268
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=48.89 E-value=16 Score=38.22 Aligned_cols=41 Identities=12% Similarity=0.057 Sum_probs=27.4
Q ss_pred HhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccch
Q 004358 33 DAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTV 77 (759)
Q Consensus 33 ~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~ 77 (759)
..+...+|.+|+|+|||.-.+.-+...+.. +. +++|.+--+
T Consensus 59 ~~G~iv~I~G~pGsGKTtLal~la~~~~~~---g~-~vlyi~~E~ 99 (349)
T 2zr9_A 59 PRGRVIEIYGPESSGKTTVALHAVANAQAA---GG-IAAFIDAEH 99 (349)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHT---TC-CEEEEESSC
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhC---CC-eEEEEECCC
Confidence 356789999999999998766655444432 34 566555444
No 269
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=48.88 E-value=12 Score=39.69 Aligned_cols=48 Identities=19% Similarity=0.214 Sum_probs=30.6
Q ss_pred EcCeeeeCCCCCCCHH-----HHHHHHHHHHHH---HhCCcEEEEcCCCCcHHHHH
Q 004358 5 LEDVTVYFPYDNIYPE-----QYSYMLELKRAL---DAKGHCLLEMPTGTGKTIAL 52 (759)
Q Consensus 5 i~~~~v~FPy~~~r~~-----Q~~~~~~v~~al---~~~~~~liEaPTGtGKTla~ 52 (759)
.+++...||-+.++.. -.+.--.+.+.+ ..|+.+.|-+|+|+|||.-.
T Consensus 136 Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl 191 (422)
T 3ice_A 136 FENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLL 191 (422)
T ss_dssp TTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHH
T ss_pred eccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHH
Confidence 4566666776643333 223333444443 45789999999999999754
No 270
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=48.67 E-value=10 Score=45.07 Aligned_cols=35 Identities=17% Similarity=0.097 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHhC--CcEEEEcCCCCcHHHHHH
Q 004358 19 PEQYSYMLELKRALDAK--GHCLLEMPTGTGKTIALL 53 (759)
Q Consensus 19 ~~Q~~~~~~v~~al~~~--~~~liEaPTGtGKTla~L 53 (759)
-+|.+.+..+.+.+..+ .++++.+|+|||||...-
T Consensus 173 iGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~ 209 (854)
T 1qvr_A 173 IGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVE 209 (854)
T ss_dssp CSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHH
T ss_pred CCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHH
Confidence 46667788888888765 489999999999997543
No 271
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=48.44 E-value=16 Score=37.60 Aligned_cols=23 Identities=17% Similarity=0.099 Sum_probs=17.8
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHH
Q 004358 35 KGHCLLEMPTGTGKTIALLSLIT 57 (759)
Q Consensus 35 ~~~~liEaPTGtGKTla~L~~~l 57 (759)
+...+|-+|+|+|||.-.+.-+.
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999986555443
No 272
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=48.30 E-value=21 Score=37.49 Aligned_cols=41 Identities=15% Similarity=0.096 Sum_probs=27.7
Q ss_pred hCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccchh
Q 004358 34 AKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVH 78 (759)
Q Consensus 34 ~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~~ 78 (759)
.+...+|.+|+|+|||.-.+.-+...+.. +. +++|.+--++
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~---g~-~vlyid~E~s 102 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQRE---GK-TCAFIDAEHA 102 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT---TC-CEEEEESSCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC---CC-eEEEEeCCCC
Confidence 45689999999999998776655544432 34 5666554443
No 273
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=48.04 E-value=18 Score=37.97 Aligned_cols=42 Identities=12% Similarity=-0.069 Sum_probs=27.8
Q ss_pred hCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccchhh
Q 004358 34 AKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHE 79 (759)
Q Consensus 34 ~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~~l 79 (759)
.|...+|-+|+|+|||.-.+..+...+. .+. +|+|.+.-++.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~---~gg-~VlyId~E~s~ 101 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQK---MGG-VAAFIDAEHAL 101 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHH---TTC-CEEEEESSCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh---cCC-eEEEEeccccc
Confidence 4567889999999999866665544443 234 67666554443
No 274
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=48.00 E-value=19 Score=37.15 Aligned_cols=41 Identities=15% Similarity=0.178 Sum_probs=29.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccchhh
Q 004358 37 HCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHE 79 (759)
Q Consensus 37 ~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~~l 79 (759)
..+|-+|+|+|||.-.|-.+...++.. .+. +++|.+.-++.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g-~g~-~vlyId~E~s~ 70 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQY-PDA-VCLFYDSEFGI 70 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHC-TTC-EEEEEESSCCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcC-CCc-eEEEEeccchh
Confidence 678889999999987777666655532 145 78887766665
No 275
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=47.90 E-value=33 Score=32.17 Aligned_cols=69 Identities=6% Similarity=0.054 Sum_probs=48.8
Q ss_pred eeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccchhhHHH
Q 004358 10 VYFPYDNIYPEQYSYMLELKRALDAK-GHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEK 82 (759)
Q Consensus 10 v~FPy~~~r~~Q~~~~~~v~~al~~~-~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~~l~~Q 82 (759)
+.||-.+ -|-+.....++...+... ...+|.++-|++||-..+...+..++.. |+ +|.+.++|..-...
T Consensus 26 ~~~~~~~-~~~~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~~--Gr-~V~vLAp~~~s~~~ 95 (189)
T 2l8b_A 26 TVHPEKS-VPRTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAREQ--GR-EVQIIAADRRSQMN 95 (189)
T ss_dssp CCCGGGC-CCCHHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHHT--TC-CEEEECSTTHHHHH
T ss_pred ccCCcCc-cccCccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHhc--Ce-EEEEEcCchHHHHH
Confidence 4677654 445555666666555444 6889999999999998766655555544 67 99999999985544
No 276
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=47.89 E-value=14 Score=45.44 Aligned_cols=40 Identities=20% Similarity=0.252 Sum_probs=27.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccchh
Q 004358 38 CLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVH 78 (759)
Q Consensus 38 ~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~~ 78 (759)
-+|-|+.|||||...+.-+.......+.+. +|++.+|.+.
T Consensus 4 ~lV~agAGSGKT~~l~~ri~~ll~~~~~~~-~il~lVP~q~ 43 (1166)
T 3u4q_B 4 EFLVGRSGSGKTKLIINSIQDELRRAPFGK-PIIFLVPDQM 43 (1166)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHHCTTSS-CEEEECCGGG
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCCC-cEEEEecCcc
Confidence 478999999999987765443333444445 8999966554
No 277
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=47.87 E-value=14 Score=38.52 Aligned_cols=23 Identities=22% Similarity=-0.093 Sum_probs=17.9
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHH
Q 004358 35 KGHCLLEMPTGTGKTIALLSLIT 57 (759)
Q Consensus 35 ~~~~liEaPTGtGKTla~L~~~l 57 (759)
|...+|-+|+|+|||.-.+.-+.
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~ 144 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCV 144 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999986655443
No 278
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=47.86 E-value=7 Score=35.66 Aligned_cols=15 Identities=27% Similarity=0.180 Sum_probs=13.1
Q ss_pred cEEEEcCCCCcHHHH
Q 004358 37 HCLLEMPTGTGKTIA 51 (759)
Q Consensus 37 ~~liEaPTGtGKTla 51 (759)
.++|++|.|+|||..
T Consensus 3 ~i~l~G~~GsGKsT~ 17 (173)
T 3kb2_A 3 LIILEGPDCCFKSTV 17 (173)
T ss_dssp EEEEECSSSSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578999999999963
No 279
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=47.86 E-value=9.8 Score=37.85 Aligned_cols=30 Identities=17% Similarity=0.141 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHh---CCcEEEEcCCCCcHHHH
Q 004358 22 YSYMLELKRALDA---KGHCLLEMPTGTGKTIA 51 (759)
Q Consensus 22 ~~~~~~v~~al~~---~~~~liEaPTGtGKTla 51 (759)
...+..+.-.+.. +..++|-+|+|+|||..
T Consensus 32 ~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl 64 (250)
T 3nwj_A 32 QQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTV 64 (250)
T ss_dssp CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHH
T ss_pred chhhhhhhhhhhhhcCCCEEEEECCCCCCHHHH
Confidence 3467777777777 99999999999999974
No 280
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=47.21 E-value=9.2 Score=35.76 Aligned_cols=18 Identities=17% Similarity=0.195 Sum_probs=15.6
Q ss_pred HhCCcEEEEcCCCCcHHH
Q 004358 33 DAKGHCLLEMPTGTGKTI 50 (759)
Q Consensus 33 ~~~~~~liEaPTGtGKTl 50 (759)
..+..+++++|+|+|||.
T Consensus 7 ~~~~~I~l~G~~GsGKsT 24 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGT 24 (196)
T ss_dssp TTSCEEEEEECTTSSHHH
T ss_pred cCCCEEEEECCCCCCHHH
Confidence 456789999999999997
No 281
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=47.01 E-value=7.8 Score=36.85 Aligned_cols=18 Identities=28% Similarity=0.484 Sum_probs=14.3
Q ss_pred hCCcEEEEcCCCCcHHHH
Q 004358 34 AKGHCLLEMPTGTGKTIA 51 (759)
Q Consensus 34 ~~~~~liEaPTGtGKTla 51 (759)
.++.++|-+|+|+|||-.
T Consensus 3 ~g~~i~lvGpsGaGKSTL 20 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTL 20 (198)
T ss_dssp --CCEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467899999999999963
No 282
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=46.77 E-value=8 Score=37.41 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=15.8
Q ss_pred HHHHHHHhCCcEEEEcCCCCcHHH
Q 004358 27 ELKRALDAKGHCLLEMPTGTGKTI 50 (759)
Q Consensus 27 ~v~~al~~~~~~liEaPTGtGKTl 50 (759)
.|--.+..|+.+.|-+|+|+|||-
T Consensus 15 ~isl~i~~G~~~~lvGpsGsGKST 38 (218)
T 1z6g_A 15 VPRGSMNNIYPLVICGPSGVGKGT 38 (218)
T ss_dssp -------CCCCEEEECSTTSSHHH
T ss_pred CCceecCCCCEEEEECCCCCCHHH
Confidence 444456678899999999999996
No 283
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=46.63 E-value=6.3 Score=37.75 Aligned_cols=14 Identities=36% Similarity=0.501 Sum_probs=12.4
Q ss_pred CCcEEEEcCCCChh
Q 004358 227 KESVVVFDEAHNID 240 (759)
Q Consensus 227 ~~~ivI~DEAHnl~ 240 (759)
...+|||||||++.
T Consensus 87 ~~~vliIDEAq~l~ 100 (199)
T 2r2a_A 87 IGSIVIVDEAQDVW 100 (199)
T ss_dssp TTCEEEETTGGGTS
T ss_pred CceEEEEEChhhhc
Confidence 48999999999983
No 284
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=46.53 E-value=8.1 Score=36.54 Aligned_cols=15 Identities=33% Similarity=0.601 Sum_probs=13.3
Q ss_pred CcEEEEcCCCCcHHH
Q 004358 36 GHCLLEMPTGTGKTI 50 (759)
Q Consensus 36 ~~~liEaPTGtGKTl 50 (759)
..++|.||+|+|||-
T Consensus 2 RpIVi~GPSG~GK~T 16 (186)
T 1ex7_A 2 RPIVISGPSGTGKST 16 (186)
T ss_dssp CCEEEECCTTSSHHH
T ss_pred CEEEEECCCCCCHHH
Confidence 468999999999996
No 285
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=46.41 E-value=9.9 Score=35.17 Aligned_cols=18 Identities=33% Similarity=0.314 Sum_probs=15.4
Q ss_pred hCCcEEEEcCCCCcHHHH
Q 004358 34 AKGHCLLEMPTGTGKTIA 51 (759)
Q Consensus 34 ~~~~~liEaPTGtGKTla 51 (759)
.+.++++.+|+|+|||..
T Consensus 10 ~~~~i~i~G~~GsGKst~ 27 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTL 27 (180)
T ss_dssp CCCCEEEECSTTSSHHHH
T ss_pred cCCeEEEEeCCCCCHHHH
Confidence 356899999999999974
No 286
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=45.84 E-value=27 Score=38.28 Aligned_cols=50 Identities=12% Similarity=0.069 Sum_probs=39.1
Q ss_pred hCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccchhhHHHHHHHHHhh
Q 004358 34 AKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (759)
Q Consensus 34 ~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~l 90 (759)
.+....+.+-||+|||+. ++.+. . .. ++ +++|.|++..+..|+.+||+.+
T Consensus 13 ~~~~~~l~g~~gs~ka~~--~a~l~-~-~~--~~-p~lvv~~~~~~A~~l~~~l~~~ 62 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATL--VAEIA-E-RH--AG-PVVLIAPDMQNALRLHDEISQF 62 (483)
T ss_dssp TTCEEEEECCCTTHHHHH--HHHHH-H-HS--SS-CEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCeEEEeCCCchHHHHH--HHHHH-H-Hh--CC-CEEEEeCCHHHHHHHHHHHHhh
Confidence 456889999999999975 33332 1 22 35 7999999999999999999976
No 287
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=45.20 E-value=8.5 Score=36.32 Aligned_cols=18 Identities=22% Similarity=0.174 Sum_probs=15.1
Q ss_pred hCCcEEEEcCCCCcHHHH
Q 004358 34 AKGHCLLEMPTGTGKTIA 51 (759)
Q Consensus 34 ~~~~~liEaPTGtGKTla 51 (759)
.+..+++++|.|+|||..
T Consensus 3 ~~~~I~l~G~~GsGKsT~ 20 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQ 20 (204)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCcEEEEEcCCCCCHHHH
Confidence 356789999999999963
No 288
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=44.92 E-value=7.5 Score=37.55 Aligned_cols=17 Identities=12% Similarity=0.161 Sum_probs=14.6
Q ss_pred hCCcEEEEcCCCCcHHH
Q 004358 34 AKGHCLLEMPTGTGKTI 50 (759)
Q Consensus 34 ~~~~~liEaPTGtGKTl 50 (759)
....+++++|+|+|||.
T Consensus 4 ~~~~I~l~G~~GsGKsT 20 (222)
T 1zak_A 4 DPLKVMISGAPASGKGT 20 (222)
T ss_dssp CSCCEEEEESTTSSHHH
T ss_pred CCeEEEEECCCCCCHHH
Confidence 34578999999999996
No 289
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=44.70 E-value=8.2 Score=37.43 Aligned_cols=19 Identities=16% Similarity=0.169 Sum_probs=14.8
Q ss_pred HhCCcEEEEcCCCCcHHHH
Q 004358 33 DAKGHCLLEMPTGTGKTIA 51 (759)
Q Consensus 33 ~~~~~~liEaPTGtGKTla 51 (759)
.....+++++|+|+|||..
T Consensus 5 ~~~~~I~l~G~~GsGKsT~ 23 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTV 23 (227)
T ss_dssp --CCEEEEEECTTSSHHHH
T ss_pred ccCcEEEEECCCCCCHHHH
Confidence 3456899999999999973
No 290
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=44.23 E-value=4.7 Score=37.04 Aligned_cols=18 Identities=28% Similarity=0.268 Sum_probs=15.9
Q ss_pred HhCCcEEEEcCCCCcHHH
Q 004358 33 DAKGHCLLEMPTGTGKTI 50 (759)
Q Consensus 33 ~~~~~~liEaPTGtGKTl 50 (759)
..|+.+.+.+|.|+|||-
T Consensus 31 ~~Ge~v~L~G~nGaGKTT 48 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTT 48 (158)
T ss_dssp SSCEEEEEECSTTSSHHH
T ss_pred CCCCEEEEECCCCCCHHH
Confidence 567789999999999996
No 291
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=43.86 E-value=12 Score=38.37 Aligned_cols=16 Identities=38% Similarity=0.416 Sum_probs=13.4
Q ss_pred CcEEEEcCCCCcHHHH
Q 004358 36 GHCLLEMPTGTGKTIA 51 (759)
Q Consensus 36 ~~~liEaPTGtGKTla 51 (759)
..++|.+|||+|||-.
T Consensus 11 ~~i~i~GptgsGKt~l 26 (316)
T 3foz_A 11 KAIFLMGPTASGKTAL 26 (316)
T ss_dssp EEEEEECCTTSCHHHH
T ss_pred cEEEEECCCccCHHHH
Confidence 3578899999999964
No 292
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=43.67 E-value=21 Score=37.80 Aligned_cols=41 Identities=12% Similarity=0.186 Sum_probs=26.8
Q ss_pred hCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccchh
Q 004358 34 AKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVH 78 (759)
Q Consensus 34 ~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~~ 78 (759)
.+.|.+|-+|||+|||...-.-+... .. .+. +|++.-+...
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~-~~--~~~-~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLRE-YM--QGS-RVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH-HT--TTC-CEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHH-HH--CCC-EEEEEeCCcC
Confidence 46799999999999997543322222 22 245 7888766543
No 293
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=43.64 E-value=25 Score=36.99 Aligned_cols=41 Identities=12% Similarity=0.073 Sum_probs=26.6
Q ss_pred hCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccchh
Q 004358 34 AKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVH 78 (759)
Q Consensus 34 ~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~~ 78 (759)
.+...+|-+|+|+|||.-.+.-+...+.. +. +|+|.+--++
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~---g~-~vlyi~~E~s 113 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKA---GG-TCAFIDAEHA 113 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT---TC-CEEEEESSCC
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHC---CC-eEEEEECCCC
Confidence 45678889999999998666554444432 34 5665554443
No 294
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=43.41 E-value=10 Score=38.19 Aligned_cols=15 Identities=47% Similarity=0.685 Sum_probs=13.2
Q ss_pred cEEEEcCCCCcHHHH
Q 004358 37 HCLLEMPTGTGKTIA 51 (759)
Q Consensus 37 ~~liEaPTGtGKTla 51 (759)
.+++.+|+|||||..
T Consensus 46 GvlL~Gp~GtGKTtL 60 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLL 60 (274)
T ss_dssp EEEEESSTTSCHHHH
T ss_pred eEEEECCCCCcHHHH
Confidence 489999999999974
No 295
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=43.05 E-value=11 Score=37.21 Aligned_cols=15 Identities=27% Similarity=0.485 Sum_probs=13.4
Q ss_pred CcEEEEcCCCCcHHH
Q 004358 36 GHCLLEMPTGTGKTI 50 (759)
Q Consensus 36 ~~~liEaPTGtGKTl 50 (759)
..+++.+|.|+|||.
T Consensus 30 ~~I~l~G~~GsGKsT 44 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGT 44 (243)
T ss_dssp EEEEEECCTTSSHHH
T ss_pred cEEEEECCCCCCHHH
Confidence 468999999999996
No 296
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=43.00 E-value=9.1 Score=35.16 Aligned_cols=14 Identities=29% Similarity=0.216 Sum_probs=12.7
Q ss_pred cEEEEcCCCCcHHH
Q 004358 37 HCLLEMPTGTGKTI 50 (759)
Q Consensus 37 ~~liEaPTGtGKTl 50 (759)
.+++.+|+|+|||.
T Consensus 4 ~I~i~G~~GsGKST 17 (181)
T 1ly1_A 4 IILTIGCPGSGKST 17 (181)
T ss_dssp EEEEECCTTSSHHH
T ss_pred EEEEecCCCCCHHH
Confidence 57899999999996
No 297
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=42.97 E-value=22 Score=34.42 Aligned_cols=42 Identities=10% Similarity=0.087 Sum_probs=28.6
Q ss_pred HhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccchh
Q 004358 33 DAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVH 78 (759)
Q Consensus 33 ~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~~ 78 (759)
..|..-++-+|.|+|||..+|-.+..+..+ +. ++++.++...
T Consensus 26 ~~G~I~vitG~M~sGKTT~Llr~~~r~~~~---g~-kvli~kp~~D 67 (219)
T 3e2i_A 26 HSGWIECITGSMFSGKSEELIRRLRRGIYA---KQ-KVVVFKPAID 67 (219)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHHT---TC-CEEEEEEC--
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHc---CC-ceEEEEeccC
Confidence 456788899999999998777665555432 35 7888877553
No 298
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=42.96 E-value=22 Score=34.47 Aligned_cols=24 Identities=33% Similarity=0.292 Sum_probs=19.6
Q ss_pred HHHhCCcEEEEcCCCCcHHHHHHH
Q 004358 31 ALDAKGHCLLEMPTGTGKTIALLS 54 (759)
Q Consensus 31 al~~~~~~liEaPTGtGKTla~L~ 54 (759)
.+..|+...|-+|+|+|||.-..+
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~ 49 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQ 49 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHH
Confidence 456788999999999999975544
No 299
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=42.96 E-value=7.4 Score=36.18 Aligned_cols=17 Identities=24% Similarity=0.368 Sum_probs=14.5
Q ss_pred hCCcEEEEcCCCCcHHH
Q 004358 34 AKGHCLLEMPTGTGKTI 50 (759)
Q Consensus 34 ~~~~~liEaPTGtGKTl 50 (759)
.+..+++++|+|+|||.
T Consensus 3 ~g~~I~l~G~~GsGKST 19 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGT 19 (186)
T ss_dssp CEEEEEEECCTTSCHHH
T ss_pred CCeEEEEECCCCCCHHH
Confidence 35578999999999996
No 300
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=42.96 E-value=9.1 Score=36.03 Aligned_cols=14 Identities=21% Similarity=0.280 Sum_probs=12.6
Q ss_pred cEEEEcCCCCcHHH
Q 004358 37 HCLLEMPTGTGKTI 50 (759)
Q Consensus 37 ~~liEaPTGtGKTl 50 (759)
.++|++|+|+|||.
T Consensus 2 ~I~i~G~~GsGKsT 15 (205)
T 2jaq_A 2 KIAIFGTVGAGKST 15 (205)
T ss_dssp EEEEECCTTSCHHH
T ss_pred EEEEECCCccCHHH
Confidence 47899999999996
No 301
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=42.72 E-value=8.6 Score=35.78 Aligned_cols=14 Identities=21% Similarity=0.278 Sum_probs=12.6
Q ss_pred cEEEEcCCCCcHHH
Q 004358 37 HCLLEMPTGTGKTI 50 (759)
Q Consensus 37 ~~liEaPTGtGKTl 50 (759)
.+++++|.|+|||.
T Consensus 3 ~I~i~G~~GsGKsT 16 (194)
T 1nks_A 3 IGIVTGIPGVGKST 16 (194)
T ss_dssp EEEEEECTTSCHHH
T ss_pred EEEEECCCCCCHHH
Confidence 57899999999996
No 302
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=42.58 E-value=10 Score=40.19 Aligned_cols=20 Identities=30% Similarity=0.408 Sum_probs=16.4
Q ss_pred HHHhCCcEEEEcCCCCcHHH
Q 004358 31 ALDAKGHCLLEMPTGTGKTI 50 (759)
Q Consensus 31 al~~~~~~liEaPTGtGKTl 50 (759)
.+..+..+++.+|+|+|||.
T Consensus 165 ~i~~~~~i~l~G~~GsGKST 184 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTT 184 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHH
T ss_pred ccCCCCEEEEECCCCCCHHH
Confidence 34456789999999999986
No 303
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=42.23 E-value=19 Score=40.26 Aligned_cols=19 Identities=32% Similarity=0.228 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCCcHHHHHH
Q 004358 35 KGHCLLEMPTGTGKTIALL 53 (759)
Q Consensus 35 ~~~~liEaPTGtGKTla~L 53 (759)
+.++++-+|+|||||...-
T Consensus 108 g~~vll~Gp~GtGKTtlar 126 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAK 126 (543)
T ss_dssp SCEEEEESSSSSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 5689999999999997543
No 304
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=41.40 E-value=10 Score=39.87 Aligned_cols=19 Identities=37% Similarity=0.641 Sum_probs=15.8
Q ss_pred HhCCcEEEEcCCCCcHHHH
Q 004358 33 DAKGHCLLEMPTGTGKTIA 51 (759)
Q Consensus 33 ~~~~~~liEaPTGtGKTla 51 (759)
..++.++|-+|||+|||-.
T Consensus 121 ~~~g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTT 139 (356)
T ss_dssp CSSEEEEEECSTTSCHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3456899999999999964
No 305
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=41.34 E-value=9 Score=36.30 Aligned_cols=17 Identities=24% Similarity=0.165 Sum_probs=14.4
Q ss_pred CCcEEEEcCCCCcHHHH
Q 004358 35 KGHCLLEMPTGTGKTIA 51 (759)
Q Consensus 35 ~~~~liEaPTGtGKTla 51 (759)
+..+++++|.|+|||..
T Consensus 4 ~~~I~i~G~~GsGKsT~ 20 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQ 20 (213)
T ss_dssp CEEEEEECCTTSSHHHH
T ss_pred CeEEEEEcCCCCCHHHH
Confidence 45789999999999973
No 306
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=40.98 E-value=11 Score=34.60 Aligned_cols=17 Identities=18% Similarity=0.155 Sum_probs=14.3
Q ss_pred CCcEEEEcCCCCcHHHH
Q 004358 35 KGHCLLEMPTGTGKTIA 51 (759)
Q Consensus 35 ~~~~liEaPTGtGKTla 51 (759)
+..+++.+|+|+|||-.
T Consensus 3 ~~~i~l~G~~GsGKST~ 19 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGI 19 (178)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 45789999999999963
No 307
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=40.94 E-value=47 Score=31.84 Aligned_cols=18 Identities=33% Similarity=0.425 Sum_probs=15.2
Q ss_pred hCCcEEEEcCCCCcHHHH
Q 004358 34 AKGHCLLEMPTGTGKTIA 51 (759)
Q Consensus 34 ~~~~~liEaPTGtGKTla 51 (759)
.|..+++|+|.|+|||-.
T Consensus 5 ~g~~i~~eG~~gsGKsT~ 22 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTN 22 (213)
T ss_dssp CCEEEEEECSTTSSHHHH
T ss_pred CceEEEEEcCCCCCHHHH
Confidence 366889999999999864
No 308
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=40.60 E-value=8.9 Score=35.77 Aligned_cols=17 Identities=24% Similarity=0.206 Sum_probs=14.3
Q ss_pred CCcEEEEcCCCCcHHHH
Q 004358 35 KGHCLLEMPTGTGKTIA 51 (759)
Q Consensus 35 ~~~~liEaPTGtGKTla 51 (759)
+..+++++|.|+|||..
T Consensus 5 ~~~I~l~G~~GsGKST~ 21 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTL 21 (193)
T ss_dssp CEEEEEEESTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45788999999999973
No 309
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=40.56 E-value=11 Score=36.55 Aligned_cols=20 Identities=20% Similarity=0.448 Sum_probs=15.8
Q ss_pred HHHhCCcEEEEcCCCCcHHH
Q 004358 31 ALDAKGHCLLEMPTGTGKTI 50 (759)
Q Consensus 31 al~~~~~~liEaPTGtGKTl 50 (759)
.+..|+.++|-+|+|+|||-
T Consensus 12 ~~~~G~ii~l~GpsGsGKST 31 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSS 31 (219)
T ss_dssp ---CCCEEEEECCTTSCHHH
T ss_pred cCCCCcEEEEECCCCCCHHH
Confidence 45678899999999999996
No 310
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=39.90 E-value=12 Score=35.81 Aligned_cols=19 Identities=16% Similarity=0.038 Sum_probs=15.7
Q ss_pred HHhCCcEEEEcCCCCcHHH
Q 004358 32 LDAKGHCLLEMPTGTGKTI 50 (759)
Q Consensus 32 l~~~~~~liEaPTGtGKTl 50 (759)
+..+..+++++|+|+|||.
T Consensus 22 ~~~~~~i~~~G~~GsGKsT 40 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKST 40 (211)
T ss_dssp TSSCEEEEEECSTTSSHHH
T ss_pred CCCCCEEEEECCCCCCHHH
Confidence 3456688999999999986
No 311
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=39.78 E-value=7 Score=36.52 Aligned_cols=19 Identities=26% Similarity=0.188 Sum_probs=16.2
Q ss_pred HHhCCcEEEEcCCCCcHHH
Q 004358 32 LDAKGHCLLEMPTGTGKTI 50 (759)
Q Consensus 32 l~~~~~~liEaPTGtGKTl 50 (759)
+..|..+++-+|+|+|||.
T Consensus 6 i~~g~~i~l~G~~GsGKST 24 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKST 24 (191)
T ss_dssp CCTTEEEEEEECTTSCHHH
T ss_pred CCCCeEEEEECCCCCCHHH
Confidence 4467789999999999996
No 312
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=39.74 E-value=12 Score=34.85 Aligned_cols=15 Identities=33% Similarity=0.601 Sum_probs=13.2
Q ss_pred CcEEEEcCCCCcHHH
Q 004358 36 GHCLLEMPTGTGKTI 50 (759)
Q Consensus 36 ~~~liEaPTGtGKTl 50 (759)
+.+.+-+|+|+|||-
T Consensus 2 ~ii~l~GpsGaGKsT 16 (186)
T 3a00_A 2 RPIVISGPSGTGKST 16 (186)
T ss_dssp CCEEEESSSSSSHHH
T ss_pred CEEEEECCCCCCHHH
Confidence 567899999999996
No 313
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=39.73 E-value=11 Score=35.78 Aligned_cols=18 Identities=17% Similarity=0.165 Sum_probs=15.2
Q ss_pred hCCcEEEEcCCCCcHHHH
Q 004358 34 AKGHCLLEMPTGTGKTIA 51 (759)
Q Consensus 34 ~~~~~liEaPTGtGKTla 51 (759)
.+..+++++|.|+|||..
T Consensus 9 ~~~~I~l~G~~GsGKST~ 26 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQ 26 (212)
T ss_dssp CSCEEEEEESTTSSHHHH
T ss_pred cCCEEEEEcCCCCCHHHH
Confidence 356789999999999973
No 314
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=39.57 E-value=12 Score=34.09 Aligned_cols=16 Identities=38% Similarity=0.580 Sum_probs=14.3
Q ss_pred CCcEEEEcCCCCcHHH
Q 004358 35 KGHCLLEMPTGTGKTI 50 (759)
Q Consensus 35 ~~~~liEaPTGtGKTl 50 (759)
+..++|-+|.|+|||.
T Consensus 4 ~~~i~l~G~~GsGKST 19 (173)
T 1kag_A 4 KRNIFLVGPMGAGKST 19 (173)
T ss_dssp CCCEEEECCTTSCHHH
T ss_pred CCeEEEECCCCCCHHH
Confidence 5688999999999996
No 315
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=39.50 E-value=25 Score=47.52 Aligned_cols=38 Identities=24% Similarity=0.314 Sum_probs=28.9
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHH
Q 004358 18 YPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSL 55 (759)
Q Consensus 18 r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~L~~ 55 (759)
-|.|..=+-.+++.+....-+++-+|||+|||.++=+-
T Consensus 889 ~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~L 926 (3245)
T 3vkg_A 889 KQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEVY 926 (3245)
T ss_dssp CHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHHH
Confidence 56666666666777776767889999999999986543
No 316
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=39.49 E-value=19 Score=37.62 Aligned_cols=36 Identities=19% Similarity=0.198 Sum_probs=26.3
Q ss_pred CHHHHHHHHHHHHHHH---hCC--cEEEEcCCCCcHHHHHH
Q 004358 18 YPEQYSYMLELKRALD---AKG--HCLLEMPTGTGKTIALL 53 (759)
Q Consensus 18 r~~Q~~~~~~v~~al~---~~~--~~liEaPTGtGKTla~L 53 (759)
-..|.++-+.|...++ +|- .++.=+.||+|||...+
T Consensus 63 ~~~Q~~Vy~~v~~lv~~~l~G~n~tifAYGqTGSGKTyTM~ 103 (347)
T 1f9v_A 63 QDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTML 103 (347)
T ss_dssp TCCHHHHHHHHHHHHGGGGGTCCEEEEEECCTTSSHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCceeEEEEECCCCCCCcEecc
Confidence 5678888887765443 343 56778999999998864
No 317
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=39.36 E-value=11 Score=35.18 Aligned_cols=15 Identities=27% Similarity=0.348 Sum_probs=12.8
Q ss_pred cEEEEcCCCCcHHHH
Q 004358 37 HCLLEMPTGTGKTIA 51 (759)
Q Consensus 37 ~~liEaPTGtGKTla 51 (759)
.+++++|.|+|||..
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQ 16 (197)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999963
No 318
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=39.13 E-value=19 Score=38.19 Aligned_cols=18 Identities=28% Similarity=0.449 Sum_probs=15.2
Q ss_pred hCCcEEEEcCCCCcHHHH
Q 004358 34 AKGHCLLEMPTGTGKTIA 51 (759)
Q Consensus 34 ~~~~~liEaPTGtGKTla 51 (759)
....+++.+++|||||+.
T Consensus 159 ~~~~vli~Ge~GtGK~~l 176 (387)
T 1ny5_A 159 AECPVLITGESGVGKEVV 176 (387)
T ss_dssp CCSCEEEECSTTSSHHHH
T ss_pred CCCCeEEecCCCcCHHHH
Confidence 346899999999999974
No 319
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=39.06 E-value=44 Score=32.39 Aligned_cols=18 Identities=33% Similarity=0.499 Sum_probs=15.2
Q ss_pred hCCcEEEEcCCCCcHHHH
Q 004358 34 AKGHCLLEMPTGTGKTIA 51 (759)
Q Consensus 34 ~~~~~liEaPTGtGKTla 51 (759)
.+..+++|+|.|+|||.-
T Consensus 25 ~g~~i~i~G~~GsGKsT~ 42 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTV 42 (229)
T ss_dssp CCEEEEEECCTTSCHHHH
T ss_pred CCeEEEEEcCCCCCHHHH
Confidence 356899999999999863
No 320
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=39.04 E-value=54 Score=35.38 Aligned_cols=20 Identities=30% Similarity=0.320 Sum_probs=15.6
Q ss_pred CcEEEEcCCCCcHHHHHHHH
Q 004358 36 GHCLLEMPTGTGKTIALLSL 55 (759)
Q Consensus 36 ~~~liEaPTGtGKTla~L~~ 55 (759)
..+++-+|+|+|||....--
T Consensus 101 ~vIlivG~~G~GKTTt~~kL 120 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKL 120 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHH
Confidence 36788999999999865443
No 321
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=38.88 E-value=5.6 Score=38.09 Aligned_cols=28 Identities=21% Similarity=0.299 Sum_probs=19.6
Q ss_pred HHHHHHHHHHH----hCCcEEEEcCCCCcHHH
Q 004358 23 SYMLELKRALD----AKGHCLLEMPTGTGKTI 50 (759)
Q Consensus 23 ~~~~~v~~al~----~~~~~liEaPTGtGKTl 50 (759)
++++.+.+.+. .+..+.|-+|+|+|||.
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKST 37 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKST 37 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHH
Confidence 35555555443 34578899999999985
No 322
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=38.82 E-value=12 Score=35.31 Aligned_cols=18 Identities=28% Similarity=0.412 Sum_probs=15.5
Q ss_pred hCCcEEEEcCCCCcHHHH
Q 004358 34 AKGHCLLEMPTGTGKTIA 51 (759)
Q Consensus 34 ~~~~~liEaPTGtGKTla 51 (759)
.+..++|.+|.|+|||..
T Consensus 28 ~g~~i~l~G~~GsGKSTl 45 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTI 45 (200)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 467899999999999963
No 323
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=38.80 E-value=12 Score=35.56 Aligned_cols=21 Identities=19% Similarity=0.283 Sum_probs=16.3
Q ss_pred HHHhCCcEEEEcCCCCcHHHH
Q 004358 31 ALDAKGHCLLEMPTGTGKTIA 51 (759)
Q Consensus 31 al~~~~~~liEaPTGtGKTla 51 (759)
.+..|+.+.|-+|+|+|||--
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTL 36 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTV 36 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHH
Confidence 567889999999999999963
No 324
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=38.70 E-value=19 Score=32.47 Aligned_cols=24 Identities=25% Similarity=0.140 Sum_probs=18.3
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHHH
Q 004358 36 GHCLLEMPTGTGKTIALLSLITSYVL 61 (759)
Q Consensus 36 ~~~liEaPTGtGKTla~L~~~l~~~~ 61 (759)
+..+|-+|+|+|||-. +-|+.|+.
T Consensus 24 g~~~I~G~NGsGKSti--l~Ai~~~l 47 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSL--LDAILVGL 47 (149)
T ss_dssp EEEEEECCTTSSHHHH--HHHHHHHH
T ss_pred CeEEEECCCCCCHHHH--HHHHHHHH
Confidence 4678999999999974 45566654
No 325
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=38.65 E-value=11 Score=35.14 Aligned_cols=17 Identities=18% Similarity=0.083 Sum_probs=14.1
Q ss_pred CCcEEEEcCCCCcHHHH
Q 004358 35 KGHCLLEMPTGTGKTIA 51 (759)
Q Consensus 35 ~~~~liEaPTGtGKTla 51 (759)
+..+++++|+|+|||..
T Consensus 3 ~~~I~l~G~~GsGKsT~ 19 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQ 19 (196)
T ss_dssp CEEEEEECCTTSSHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 34688999999999963
No 326
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=38.42 E-value=11 Score=36.60 Aligned_cols=19 Identities=32% Similarity=0.424 Sum_probs=12.0
Q ss_pred HhCCcEEEEcCCCCcHHHH
Q 004358 33 DAKGHCLLEMPTGTGKTIA 51 (759)
Q Consensus 33 ~~~~~~liEaPTGtGKTla 51 (759)
..|..+.|-+|+|+|||-.
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl 43 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTV 43 (231)
T ss_dssp ECCCEEEEECSCC----CH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 4567889999999999964
No 327
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=38.29 E-value=64 Score=30.90 Aligned_cols=18 Identities=33% Similarity=0.348 Sum_probs=15.3
Q ss_pred hCCcEEEEcCCCCcHHHH
Q 004358 34 AKGHCLLEMPTGTGKTIA 51 (759)
Q Consensus 34 ~~~~~liEaPTGtGKTla 51 (759)
.|..+++|+|.|+|||..
T Consensus 2 ~g~~i~~eG~~gsGKsT~ 19 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTA 19 (213)
T ss_dssp CCCEEEEEECTTSCHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 367899999999999964
No 328
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=38.28 E-value=13 Score=35.81 Aligned_cols=16 Identities=31% Similarity=0.374 Sum_probs=13.9
Q ss_pred CCcEEEEcCCCCcHHH
Q 004358 35 KGHCLLEMPTGTGKTI 50 (759)
Q Consensus 35 ~~~~liEaPTGtGKTl 50 (759)
+..+++++|+|+|||.
T Consensus 4 ~~~I~l~G~~GsGKsT 19 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGT 19 (220)
T ss_dssp CCEEEEECCTTSSHHH
T ss_pred CcEEEEECCCCCCHHH
Confidence 3578999999999996
No 329
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=38.24 E-value=12 Score=36.31 Aligned_cols=18 Identities=33% Similarity=0.220 Sum_probs=15.5
Q ss_pred hCCcEEEEcCCCCcHHHH
Q 004358 34 AKGHCLLEMPTGTGKTIA 51 (759)
Q Consensus 34 ~~~~~liEaPTGtGKTla 51 (759)
.|..+++|+|.|+|||..
T Consensus 4 ~g~~i~~eG~~g~GKst~ 21 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQ 21 (216)
T ss_dssp CCCEEEEEECSSSSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 467899999999999963
No 330
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=38.05 E-value=35 Score=34.86 Aligned_cols=37 Identities=19% Similarity=0.268 Sum_probs=22.9
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEcc
Q 004358 35 KGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTR 75 (759)
Q Consensus 35 ~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~ 75 (759)
++.+.+-+|+|+|||-..- .|+.... +.++ +|.+...
T Consensus 102 g~vi~lvG~nGsGKTTll~--~Lagll~-~~~g-~V~l~g~ 138 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIA--KLGRYYQ-NLGK-KVMFCAG 138 (304)
T ss_dssp SSEEEEECSTTSSHHHHHH--HHHHHHH-TTTC-CEEEECC
T ss_pred CeEEEEECCCCCcHHHHHH--HHHHHHH-hcCC-EEEEEee
Confidence 4678888999999997432 3333222 3345 6766643
No 331
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=37.99 E-value=13 Score=43.88 Aligned_cols=17 Identities=47% Similarity=0.565 Sum_probs=14.8
Q ss_pred CCcEEEEcCCCCcHHHH
Q 004358 35 KGHCLLEMPTGTGKTIA 51 (759)
Q Consensus 35 ~~~~liEaPTGtGKTla 51 (759)
+.++++.+|+|||||..
T Consensus 238 ~~~vLL~Gp~GtGKTtL 254 (806)
T 1ypw_A 238 PRGILLYGPPGTGKTLI 254 (806)
T ss_dssp CCEEEECSCTTSSHHHH
T ss_pred CCeEEEECcCCCCHHHH
Confidence 46899999999999964
No 332
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=37.92 E-value=24 Score=33.31 Aligned_cols=28 Identities=18% Similarity=0.016 Sum_probs=20.1
Q ss_pred HHHHHHHHHHh-----CCcEEEEcCCCCcHHHH
Q 004358 24 YMLELKRALDA-----KGHCLLEMPTGTGKTIA 51 (759)
Q Consensus 24 ~~~~v~~al~~-----~~~~liEaPTGtGKTla 51 (759)
.++++.+.+.. +..+.|.+|+|+|||..
T Consensus 6 ~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl 38 (201)
T 1rz3_A 6 RIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTL 38 (201)
T ss_dssp HHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHH
T ss_pred HHHHHHHHHHHhccCCCeEEEEECCCCCCHHHH
Confidence 45556665553 34688999999999964
No 333
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=37.82 E-value=11 Score=34.65 Aligned_cols=19 Identities=21% Similarity=0.242 Sum_probs=15.9
Q ss_pred HhCCcEEEEcCCCCcHHHH
Q 004358 33 DAKGHCLLEMPTGTGKTIA 51 (759)
Q Consensus 33 ~~~~~~liEaPTGtGKTla 51 (759)
..|+.+.+-+|+|+|||.-
T Consensus 7 ~~gei~~l~G~nGsGKSTl 25 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTF 25 (171)
T ss_dssp ESSEEEEEECCTTSCHHHH
T ss_pred CCCEEEEEECCCCCCHHHH
Confidence 3567889999999999963
No 334
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=37.81 E-value=33 Score=35.74 Aligned_cols=35 Identities=26% Similarity=0.111 Sum_probs=24.7
Q ss_pred CHHHHHHHHHHH----HHHHhCC--cEEEEcCCCCcHHHHH
Q 004358 18 YPEQYSYMLELK----RALDAKG--HCLLEMPTGTGKTIAL 52 (759)
Q Consensus 18 r~~Q~~~~~~v~----~al~~~~--~~liEaPTGtGKTla~ 52 (759)
.-.|.++-+.+. +.+-+|- .++.=+.||+|||...
T Consensus 72 ~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 72 TISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp TCCHHHHHHHHTHHHHHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred CCCHHHHHHhhccchhhHhhCCCceEEEEecCCCCCCCeEE
Confidence 567888776643 3444454 5677899999999875
No 335
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=37.79 E-value=12 Score=35.50 Aligned_cols=18 Identities=22% Similarity=0.187 Sum_probs=15.4
Q ss_pred hCCcEEEEcCCCCcHHHH
Q 004358 34 AKGHCLLEMPTGTGKTIA 51 (759)
Q Consensus 34 ~~~~~liEaPTGtGKTla 51 (759)
.+..+++++|.|+|||..
T Consensus 8 ~~~~I~l~G~~GsGKsT~ 25 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQ 25 (215)
T ss_dssp CCCEEEEEESTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 456899999999999973
No 336
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=37.73 E-value=12 Score=37.13 Aligned_cols=15 Identities=40% Similarity=0.330 Sum_probs=12.8
Q ss_pred cEEEEcCCCCcHHHH
Q 004358 37 HCLLEMPTGTGKTIA 51 (759)
Q Consensus 37 ~~liEaPTGtGKTla 51 (759)
.++|-+|||+|||..
T Consensus 3 li~I~G~~GSGKSTl 17 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDM 17 (253)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCcCHHHH
Confidence 468899999999963
No 337
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=37.56 E-value=24 Score=37.17 Aligned_cols=36 Identities=19% Similarity=0.026 Sum_probs=25.4
Q ss_pred CHHHHHHHHHHHH----HHHhCC--cEEEEcCCCCcHHHHHH
Q 004358 18 YPEQYSYMLELKR----ALDAKG--HCLLEMPTGTGKTIALL 53 (759)
Q Consensus 18 r~~Q~~~~~~v~~----al~~~~--~~liEaPTGtGKTla~L 53 (759)
...|.++-+.+.. .+-+|- .++.=+.||+|||....
T Consensus 62 ~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~ 103 (365)
T 2y65_A 62 NASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTME 103 (365)
T ss_dssp TCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred CCCHHHHHHHhhhhHHHHHhCCCceEEEeecCCCCCCceEEe
Confidence 6678887766543 334453 56778999999998753
No 338
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=37.47 E-value=30 Score=33.79 Aligned_cols=40 Identities=13% Similarity=0.132 Sum_probs=29.2
Q ss_pred hCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccch
Q 004358 34 AKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTV 77 (759)
Q Consensus 34 ~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~ 77 (759)
.+...++-+|.|+|||.++|=-+..+.. .+. +|++.++.+
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~---~g~-kvli~kp~~ 57 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQI---AQY-KCLVIKYAK 57 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHT---TTC-CEEEEEETT
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHH---CCC-eEEEEeecC
Confidence 3667888999999999988876665543 245 788876544
No 339
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=37.29 E-value=11 Score=36.56 Aligned_cols=16 Identities=38% Similarity=0.399 Sum_probs=14.0
Q ss_pred CCcEEEEcCCCCcHHH
Q 004358 35 KGHCLLEMPTGTGKTI 50 (759)
Q Consensus 35 ~~~~liEaPTGtGKTl 50 (759)
|..+.||+|.|+|||.
T Consensus 20 g~~i~i~G~~GsGKST 35 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTT 35 (230)
T ss_dssp CEEEEEECSTTSCHHH
T ss_pred ceEEEEECCCCCCHHH
Confidence 4578999999999996
No 340
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=37.22 E-value=11 Score=39.96 Aligned_cols=20 Identities=35% Similarity=0.522 Sum_probs=16.6
Q ss_pred HHhCCcEEEEcCCCCcHHHH
Q 004358 32 LDAKGHCLLEMPTGTGKTIA 51 (759)
Q Consensus 32 l~~~~~~liEaPTGtGKTla 51 (759)
+..++.++|-+|||+|||-.
T Consensus 133 ~~~g~~i~ivG~~GsGKTTl 152 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTT 152 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHH
T ss_pred hcCCCEEEEECCCCCCHHHH
Confidence 34567899999999999963
No 341
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=37.11 E-value=14 Score=36.83 Aligned_cols=32 Identities=16% Similarity=0.029 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHH-hCCcEEEEcCCCCcHHH
Q 004358 19 PEQYSYMLELKRALD-AKGHCLLEMPTGTGKTI 50 (759)
Q Consensus 19 ~~Q~~~~~~v~~al~-~~~~~liEaPTGtGKTl 50 (759)
|.+............ ++..+++|++.|+|||-
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~I~ieG~~GsGKST 39 (263)
T 1p5z_B 7 PPKRSCPSFSASSEGTRIKKISIEGNIAAGKST 39 (263)
T ss_dssp ----------------CCEEEEEECSTTSSHHH
T ss_pred chhccCCCCcccccccCceEEEEECCCCCCHHH
Confidence 344444444433332 33578999999999996
No 342
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=37.08 E-value=17 Score=33.88 Aligned_cols=17 Identities=35% Similarity=0.331 Sum_probs=14.8
Q ss_pred CCcEEEEcCCCCcHHHH
Q 004358 35 KGHCLLEMPTGTGKTIA 51 (759)
Q Consensus 35 ~~~~liEaPTGtGKTla 51 (759)
+.++++.+|+|+|||..
T Consensus 10 ~~~I~l~G~~GsGKSTv 26 (184)
T 1y63_A 10 GINILITGTPGTGKTSM 26 (184)
T ss_dssp SCEEEEECSTTSSHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 56799999999999974
No 343
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=36.67 E-value=22 Score=37.93 Aligned_cols=36 Identities=19% Similarity=0.158 Sum_probs=25.0
Q ss_pred CHHHHHHHHHHHHHH---HhCC--cEEEEcCCCCcHHHHHH
Q 004358 18 YPEQYSYMLELKRAL---DAKG--HCLLEMPTGTGKTIALL 53 (759)
Q Consensus 18 r~~Q~~~~~~v~~al---~~~~--~~liEaPTGtGKTla~L 53 (759)
--.|.++-+.|...+ -+|- .++.=+.||+|||...+
T Consensus 119 ~~~Q~~Vf~~v~~lv~~~l~G~N~tifAYGqTGSGKTyTM~ 159 (403)
T 4etp_A 119 QDTNVDVFKEVGQLVQSSLDGYNVAIFAYGQTGSGKTFTML 159 (403)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCCEEEEEESCTTSSHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHhCCcceEEEEECCCCCCCceEeC
Confidence 556777766665433 3453 56678999999999864
No 344
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=36.56 E-value=14 Score=33.64 Aligned_cols=16 Identities=31% Similarity=0.316 Sum_probs=14.2
Q ss_pred CcEEEEcCCCCcHHHH
Q 004358 36 GHCLLEMPTGTGKTIA 51 (759)
Q Consensus 36 ~~~liEaPTGtGKTla 51 (759)
++++|.++.|+|||..
T Consensus 8 ~~i~l~G~~GsGKSTv 23 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSL 23 (168)
T ss_dssp CEEEEESCTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 5799999999999963
No 345
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=36.55 E-value=22 Score=37.51 Aligned_cols=36 Identities=19% Similarity=0.104 Sum_probs=26.3
Q ss_pred CHHHHHHHHHHHHHHH---hC--CcEEEEcCCCCcHHHHHH
Q 004358 18 YPEQYSYMLELKRALD---AK--GHCLLEMPTGTGKTIALL 53 (759)
Q Consensus 18 r~~Q~~~~~~v~~al~---~~--~~~liEaPTGtGKTla~L 53 (759)
...|.++.+.|...++ +| ..++.=+.||+|||....
T Consensus 94 ~~~Q~~Vy~~v~~lv~~~l~G~N~tifAYGqTGSGKTyTM~ 134 (376)
T 2rep_A 94 GSGQDEVFEEIAMLVQSALDGYPVCIFAYGQTGSGKTFTME 134 (376)
T ss_dssp TCCHHHHHHHHHHHHHGGGGTCCEEEEEECSTTSSHHHHHT
T ss_pred cccchhhhhhHHHHHHHhcCCCceEEEEeCCCCCCCceEee
Confidence 5678888888765443 34 357778999999998754
No 346
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=36.54 E-value=21 Score=37.30 Aligned_cols=36 Identities=19% Similarity=0.219 Sum_probs=26.3
Q ss_pred CHHHHHHHHHHHHHHHh---CC--cEEEEcCCCCcHHHHHH
Q 004358 18 YPEQYSYMLELKRALDA---KG--HCLLEMPTGTGKTIALL 53 (759)
Q Consensus 18 r~~Q~~~~~~v~~al~~---~~--~~liEaPTGtGKTla~L 53 (759)
--.|.++-+.|...++. |- .++.=+.||+|||....
T Consensus 64 ~~~Q~~vf~~v~~lv~~~l~G~n~tifAYGqTGSGKTyTm~ 104 (349)
T 3t0q_A 64 SHTNKEIFEEIRQLVQSSLDGYNVCIFAYGQTGSGKTYTML 104 (349)
T ss_dssp TCCHHHHHHHHHHHHHGGGTTCEEEEEEECSTTSSHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHCCcceeEEEeCCCCCCCceEeC
Confidence 56788888777654433 43 56778999999999864
No 347
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=36.27 E-value=12 Score=36.67 Aligned_cols=19 Identities=26% Similarity=0.212 Sum_probs=13.0
Q ss_pred HhCCcEEEEcCCCCcHHHH
Q 004358 33 DAKGHCLLEMPTGTGKTIA 51 (759)
Q Consensus 33 ~~~~~~liEaPTGtGKTla 51 (759)
..|..+++|+|.|+|||-.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~ 41 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTH 41 (227)
T ss_dssp CCCCEEEEECCC---CHHH
T ss_pred cCCeEEEEECCCCCCHHHH
Confidence 3567899999999999863
No 348
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=35.88 E-value=14 Score=35.34 Aligned_cols=15 Identities=27% Similarity=0.297 Sum_probs=12.7
Q ss_pred cEEEEcCCCCcHHHH
Q 004358 37 HCLLEMPTGTGKTIA 51 (759)
Q Consensus 37 ~~liEaPTGtGKTla 51 (759)
.++|.+|+|+|||..
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQ 16 (216)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478899999999963
No 349
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=35.74 E-value=14 Score=35.35 Aligned_cols=15 Identities=27% Similarity=0.288 Sum_probs=12.7
Q ss_pred cEEEEcCCCCcHHHH
Q 004358 37 HCLLEMPTGTGKTIA 51 (759)
Q Consensus 37 ~~liEaPTGtGKTla 51 (759)
.++|.+|+|+|||..
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQ 16 (216)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478899999999963
No 350
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=35.62 E-value=23 Score=32.59 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=18.3
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHHH
Q 004358 36 GHCLLEMPTGTGKTIALLSLITSYVL 61 (759)
Q Consensus 36 ~~~liEaPTGtGKTla~L~~~l~~~~ 61 (759)
+..+|-+|+|+|||- |+-|+.++.
T Consensus 27 g~~~i~G~NGsGKSt--ll~ai~~~l 50 (182)
T 3kta_A 27 GFTAIVGANGSGKSN--IGDAILFVL 50 (182)
T ss_dssp SEEEEEECTTSSHHH--HHHHHHHHT
T ss_pred CcEEEECCCCCCHHH--HHHHHHHHH
Confidence 478899999999996 445566654
No 351
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=35.53 E-value=27 Score=36.08 Aligned_cols=36 Identities=14% Similarity=-0.013 Sum_probs=25.3
Q ss_pred CHHHHHHHHHHH----HHHHhCC--cEEEEcCCCCcHHHHHH
Q 004358 18 YPEQYSYMLELK----RALDAKG--HCLLEMPTGTGKTIALL 53 (759)
Q Consensus 18 r~~Q~~~~~~v~----~al~~~~--~~liEaPTGtGKTla~L 53 (759)
.-.|.++-+.+. +.+-+|- .++.=+.||+|||....
T Consensus 55 ~~sQ~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~ 96 (325)
T 1bg2_A 55 STSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTME 96 (325)
T ss_dssp TCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred CCCHHHHHHHHhhhhHHHHhCCCeEEEEEECCCCCCCceEec
Confidence 567888776653 3344554 56778999999998754
No 352
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=35.52 E-value=15 Score=35.77 Aligned_cols=15 Identities=33% Similarity=0.452 Sum_probs=13.6
Q ss_pred CcEEEEcCCCCcHHH
Q 004358 36 GHCLLEMPTGTGKTI 50 (759)
Q Consensus 36 ~~~liEaPTGtGKTl 50 (759)
..+++++|+|+|||.
T Consensus 17 ~~I~l~G~~GsGKsT 31 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGT 31 (233)
T ss_dssp CEEEEECCTTSSHHH
T ss_pred eEEEEECCCCCCHHH
Confidence 578999999999996
No 353
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=35.42 E-value=13 Score=34.61 Aligned_cols=17 Identities=29% Similarity=0.176 Sum_probs=14.3
Q ss_pred CCcEEEEcCCCCcHHHH
Q 004358 35 KGHCLLEMPTGTGKTIA 51 (759)
Q Consensus 35 ~~~~liEaPTGtGKTla 51 (759)
+..++++++.|+|||..
T Consensus 13 ~~~i~l~G~~GsGKsT~ 29 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTI 29 (186)
T ss_dssp CEEEEEECCTTSSHHHH
T ss_pred CcEEEEEcCCCCCHHHH
Confidence 45788999999999963
No 354
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=35.31 E-value=14 Score=34.81 Aligned_cols=16 Identities=19% Similarity=0.177 Sum_probs=13.6
Q ss_pred CcEEEEcCCCCcHHHH
Q 004358 36 GHCLLEMPTGTGKTIA 51 (759)
Q Consensus 36 ~~~liEaPTGtGKTla 51 (759)
..+++++|+|+|||..
T Consensus 16 ~~I~l~G~~GsGKsT~ 31 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQ 31 (203)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 3688999999999963
No 355
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=35.29 E-value=15 Score=34.59 Aligned_cols=15 Identities=40% Similarity=0.558 Sum_probs=13.4
Q ss_pred cEEEEcCCCCcHHHH
Q 004358 37 HCLLEMPTGTGKTIA 51 (759)
Q Consensus 37 ~~liEaPTGtGKTla 51 (759)
.+++++|+|+|||..
T Consensus 22 ~I~l~G~~GsGKST~ 36 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQ 36 (201)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 688999999999973
No 356
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=35.23 E-value=20 Score=37.05 Aligned_cols=16 Identities=38% Similarity=0.324 Sum_probs=13.7
Q ss_pred CcEEEEcCCCCcHHHH
Q 004358 36 GHCLLEMPTGTGKTIA 51 (759)
Q Consensus 36 ~~~liEaPTGtGKTla 51 (759)
..++|-+|||+|||-.
T Consensus 6 ~~i~i~GptGsGKTtl 21 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDL 21 (323)
T ss_dssp EEEEEECCTTSCHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 3688999999999974
No 357
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=35.14 E-value=14 Score=34.23 Aligned_cols=14 Identities=36% Similarity=0.361 Sum_probs=12.4
Q ss_pred cEEEEcCCCCcHHH
Q 004358 37 HCLLEMPTGTGKTI 50 (759)
Q Consensus 37 ~~liEaPTGtGKTl 50 (759)
.+++++|.|+|||.
T Consensus 2 ~I~l~G~~GsGKsT 15 (195)
T 2pbr_A 2 LIAFEGIDGSGKTT 15 (195)
T ss_dssp EEEEECSTTSCHHH
T ss_pred EEEEECCCCCCHHH
Confidence 47899999999996
No 358
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=35.11 E-value=16 Score=33.77 Aligned_cols=18 Identities=28% Similarity=0.259 Sum_probs=14.8
Q ss_pred hCCcEEEEcCCCCcHHHH
Q 004358 34 AKGHCLLEMPTGTGKTIA 51 (759)
Q Consensus 34 ~~~~~liEaPTGtGKTla 51 (759)
.+..+++++|.|+|||..
T Consensus 4 ~g~~i~l~G~~GsGKST~ 21 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTV 21 (179)
T ss_dssp CCEEEEEECCTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 356788999999999863
No 359
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=34.85 E-value=46 Score=30.73 Aligned_cols=39 Identities=10% Similarity=-0.021 Sum_probs=23.1
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccchh
Q 004358 36 GHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVH 78 (759)
Q Consensus 36 ~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~~ 78 (759)
..+.+-+|+|+|||... ...+.+.... +. +|-+....+.
T Consensus 5 ~~i~i~G~sGsGKTTl~-~~L~~~l~~~--g~-~v~~ik~~~~ 43 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLM-EKWVAAAVRE--GW-RVGTVKHHGH 43 (169)
T ss_dssp CEEEEECCTTSSHHHHH-HHHHHHHHHT--TC-CEEEEECCC-
T ss_pred EEEEEECCCCCCHHHHH-HHHHHhhHhc--CC-eeeEEEeCCC
Confidence 35778899999999632 2233333322 34 6766666554
No 360
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=34.80 E-value=16 Score=33.26 Aligned_cols=16 Identities=19% Similarity=0.206 Sum_probs=13.7
Q ss_pred CcEEEEcCCCCcHHHH
Q 004358 36 GHCLLEMPTGTGKTIA 51 (759)
Q Consensus 36 ~~~liEaPTGtGKTla 51 (759)
..+++.+|+|+|||..
T Consensus 3 ~~I~l~G~~GsGKsT~ 18 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTV 18 (173)
T ss_dssp CCEEEESCTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 4688999999999963
No 361
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=34.60 E-value=35 Score=36.75 Aligned_cols=36 Identities=22% Similarity=0.130 Sum_probs=22.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEE-EEccc
Q 004358 37 HCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLI-YCTRT 76 (759)
Q Consensus 37 ~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi-~~T~T 76 (759)
.+++-+|+|+|||.....-+..+. . .+. +|. +++.|
T Consensus 99 vI~lvG~~GsGKTTt~~kLA~~l~-~--~G~-kVllv~~D~ 135 (433)
T 3kl4_A 99 IIMLVGVQGSGKTTTAGKLAYFYK-K--RGY-KVGLVAADV 135 (433)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHH-H--TTC-CEEEEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH-H--cCC-eEEEEecCc
Confidence 577889999999986544333332 2 244 554 45444
No 362
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=34.60 E-value=15 Score=35.58 Aligned_cols=14 Identities=36% Similarity=0.567 Sum_probs=12.5
Q ss_pred cEEEEcCCCCcHHH
Q 004358 37 HCLLEMPTGTGKTI 50 (759)
Q Consensus 37 ~~liEaPTGtGKTl 50 (759)
.+++++|+|+|||.
T Consensus 2 ~I~l~G~~GsGKsT 15 (223)
T 2xb4_A 2 NILIFGPNGSGKGT 15 (223)
T ss_dssp EEEEECCTTSCHHH
T ss_pred EEEEECCCCCCHHH
Confidence 47899999999996
No 363
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=34.54 E-value=14 Score=34.27 Aligned_cols=16 Identities=19% Similarity=0.218 Sum_probs=13.7
Q ss_pred CcEEEEcCCCCcHHHH
Q 004358 36 GHCLLEMPTGTGKTIA 51 (759)
Q Consensus 36 ~~~liEaPTGtGKTla 51 (759)
..+++++|+|+|||..
T Consensus 7 ~~I~l~G~~GsGKsT~ 22 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQ 22 (194)
T ss_dssp EEEEEEESTTSSHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 3688999999999973
No 364
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=34.13 E-value=9.5 Score=36.29 Aligned_cols=14 Identities=29% Similarity=0.313 Sum_probs=12.5
Q ss_pred cEEEEcCCCCcHHH
Q 004358 37 HCLLEMPTGTGKTI 50 (759)
Q Consensus 37 ~~liEaPTGtGKTl 50 (759)
.++|++|.|+|||.
T Consensus 2 ~I~i~G~~GsGKsT 15 (214)
T 1gtv_A 2 LIAIEGVDGAGKRT 15 (214)
T ss_dssp EEEEEEEEEEEHHH
T ss_pred EEEEEcCCCCCHHH
Confidence 57899999999996
No 365
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=33.93 E-value=21 Score=37.59 Aligned_cols=35 Identities=14% Similarity=0.093 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHH----HHHhCC--cEEEEcCCCCcHHHHHH
Q 004358 19 PEQYSYMLELKR----ALDAKG--HCLLEMPTGTGKTIALL 53 (759)
Q Consensus 19 ~~Q~~~~~~v~~----al~~~~--~~liEaPTGtGKTla~L 53 (759)
..|.++.+.+.. .+-+|- .++.=+.||+|||....
T Consensus 68 asQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTm~ 108 (366)
T 2zfi_A 68 ASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMM 108 (366)
T ss_dssp CCHHHHHHHTHHHHHHHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHhcCCeeEEEEeCCCCCCCceEee
Confidence 578888776643 334453 56678999999998753
No 366
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=33.89 E-value=17 Score=42.56 Aligned_cols=16 Identities=50% Similarity=0.613 Sum_probs=14.0
Q ss_pred CcEEEEcCCCCcHHHH
Q 004358 36 GHCLLEMPTGTGKTIA 51 (759)
Q Consensus 36 ~~~liEaPTGtGKTla 51 (759)
+.+++.+|+|||||+.
T Consensus 239 ~GILL~GPPGTGKT~L 254 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLI 254 (806)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 4699999999999973
No 367
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=33.76 E-value=23 Score=37.72 Aligned_cols=15 Identities=27% Similarity=0.344 Sum_probs=13.0
Q ss_pred cEEEEcCCCCcHHHH
Q 004358 37 HCLLEMPTGTGKTIA 51 (759)
Q Consensus 37 ~~liEaPTGtGKTla 51 (759)
.++|-+|||+|||-.
T Consensus 4 ~i~i~GptgsGKttl 18 (409)
T 3eph_A 4 VIVIAGTTGVGKSQL 18 (409)
T ss_dssp EEEEEECSSSSHHHH
T ss_pred EEEEECcchhhHHHH
Confidence 578899999999964
No 368
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=33.65 E-value=18 Score=33.13 Aligned_cols=17 Identities=24% Similarity=0.300 Sum_probs=14.4
Q ss_pred CCcEEEEcCCCCcHHHH
Q 004358 35 KGHCLLEMPTGTGKTIA 51 (759)
Q Consensus 35 ~~~~liEaPTGtGKTla 51 (759)
+..+++.+|.|+|||..
T Consensus 8 g~~i~l~G~~GsGKSTl 24 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAV 24 (175)
T ss_dssp SEEEEEECSTTSCHHHH
T ss_pred CcEEEEEcCCCCCHHHH
Confidence 45789999999999963
No 369
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=33.62 E-value=16 Score=36.00 Aligned_cols=18 Identities=28% Similarity=0.364 Sum_probs=15.4
Q ss_pred hCCcEEEEcCCCCcHHHH
Q 004358 34 AKGHCLLEMPTGTGKTIA 51 (759)
Q Consensus 34 ~~~~~liEaPTGtGKTla 51 (759)
.+..+++|+|.|+|||-.
T Consensus 26 ~~~~i~~eG~~GsGKsT~ 43 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTA 43 (236)
T ss_dssp CCCEEEEEESTTSCHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 367899999999999963
No 370
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=33.54 E-value=15 Score=35.19 Aligned_cols=15 Identities=20% Similarity=0.127 Sum_probs=12.8
Q ss_pred cEEEEcCCCCcHHHH
Q 004358 37 HCLLEMPTGTGKTIA 51 (759)
Q Consensus 37 ~~liEaPTGtGKTla 51 (759)
.+++++|+|+|||..
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQ 16 (214)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999963
No 371
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=33.49 E-value=32 Score=35.12 Aligned_cols=36 Identities=22% Similarity=0.212 Sum_probs=22.2
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEcc
Q 004358 36 GHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTR 75 (759)
Q Consensus 36 ~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~ 75 (759)
+.+.+-+|+|+|||...- .|+.... +.++ +|.+...
T Consensus 101 ~vi~lvG~nGsGKTTll~--~Lag~l~-~~~g-~V~l~g~ 136 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLG--KLAHRLK-NEGT-KVLMAAG 136 (302)
T ss_dssp EEEEEECCTTSCHHHHHH--HHHHHHH-HTTC-CEEEECC
T ss_pred cEEEEEcCCCCCHHHHHH--HHHHHHH-HcCC-eEEEEee
Confidence 467889999999997432 2332222 2345 6777654
No 372
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=33.46 E-value=14 Score=35.53 Aligned_cols=24 Identities=17% Similarity=0.148 Sum_probs=18.5
Q ss_pred HHHhCCcEEEEcCCCCcHHHHHHH
Q 004358 31 ALDAKGHCLLEMPTGTGKTIALLS 54 (759)
Q Consensus 31 al~~~~~~liEaPTGtGKTla~L~ 54 (759)
.+..|+...|-+|+|+|||.-..+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~ 44 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHT 44 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHH
Confidence 344567899999999999975443
No 373
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=33.15 E-value=18 Score=34.20 Aligned_cols=19 Identities=16% Similarity=0.153 Sum_probs=15.6
Q ss_pred HhCCcEEEEcCCCCcHHHH
Q 004358 33 DAKGHCLLEMPTGTGKTIA 51 (759)
Q Consensus 33 ~~~~~~liEaPTGtGKTla 51 (759)
..+..++|-+|+|+|||-.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl 41 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTL 41 (200)
T ss_dssp SCCEEEEEECSTTSSHHHH
T ss_pred CCCeEEEEECCCCCCHHHH
Confidence 3466888999999999963
No 374
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=33.05 E-value=16 Score=33.02 Aligned_cols=15 Identities=20% Similarity=0.073 Sum_probs=12.9
Q ss_pred cEEEEcCCCCcHHHH
Q 004358 37 HCLLEMPTGTGKTIA 51 (759)
Q Consensus 37 ~~liEaPTGtGKTla 51 (759)
.++++++.|+|||..
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTV 16 (168)
T ss_dssp EEEEESCTTSCHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 478999999999963
No 375
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=33.04 E-value=24 Score=36.52 Aligned_cols=19 Identities=21% Similarity=0.265 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCCcHHHHHH
Q 004358 35 KGHCLLEMPTGTGKTIALL 53 (759)
Q Consensus 35 ~~~~liEaPTGtGKTla~L 53 (759)
+...++.+|+|+|||.-.+
T Consensus 123 gsviLI~GpPGsGKTtLAl 141 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVH 141 (331)
T ss_dssp SEEEEEECSCSSSHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHH
Confidence 4567899999999997444
No 376
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=32.78 E-value=32 Score=35.51 Aligned_cols=31 Identities=10% Similarity=0.003 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHhCC------cEEEEcCCCCcHHHH
Q 004358 21 QYSYMLELKRALDAKG------HCLLEMPTGTGKTIA 51 (759)
Q Consensus 21 Q~~~~~~v~~al~~~~------~~liEaPTGtGKTla 51 (759)
..+....+...+-.+. .+.|-+|+|+|||-.
T Consensus 72 ~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl 108 (321)
T 3tqc_A 72 ARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTT 108 (321)
T ss_dssp HHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHH
T ss_pred chHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHH
Confidence 3444555655665553 678899999999964
No 377
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=32.72 E-value=17 Score=34.82 Aligned_cols=15 Identities=27% Similarity=0.346 Sum_probs=13.4
Q ss_pred CcEEEEcCCCCcHHH
Q 004358 36 GHCLLEMPTGTGKTI 50 (759)
Q Consensus 36 ~~~liEaPTGtGKTl 50 (759)
..+++++|+|+|||.
T Consensus 6 ~~I~l~G~~GsGKsT 20 (217)
T 3be4_A 6 HNLILIGAPGSGKGT 20 (217)
T ss_dssp CEEEEEECTTSSHHH
T ss_pred eEEEEECCCCCCHHH
Confidence 468999999999996
No 378
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=32.28 E-value=22 Score=37.46 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=19.5
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHHHh
Q 004358 36 GHCLLEMPTGTGKTIALLSLITSYVLS 62 (759)
Q Consensus 36 ~~~liEaPTGtGKTla~L~~~l~~~~~ 62 (759)
+..+|-+|||.|||. |+=|+.|+..
T Consensus 26 gl~vi~G~NGaGKT~--ileAI~~~l~ 50 (371)
T 3auy_A 26 GIVAIIGENGSGKSS--IFEAVFFALF 50 (371)
T ss_dssp EEEEEEECTTSSHHH--HHHHHHHHHH
T ss_pred CeEEEECCCCCCHHH--HHHHHHHHHc
Confidence 578999999999997 4556777543
No 379
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=31.91 E-value=23 Score=37.25 Aligned_cols=36 Identities=19% Similarity=0.069 Sum_probs=25.5
Q ss_pred CHHHHHHHHHHHH----HHHhCC--cEEEEcCCCCcHHHHHH
Q 004358 18 YPEQYSYMLELKR----ALDAKG--HCLLEMPTGTGKTIALL 53 (759)
Q Consensus 18 r~~Q~~~~~~v~~----al~~~~--~~liEaPTGtGKTla~L 53 (759)
...|.++-+.+.. .+-+|- .++.=+.||+|||....
T Consensus 66 ~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM~ 107 (359)
T 1x88_A 66 STKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTME 107 (359)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCEEEEEEEECTTSSHHHHHT
T ss_pred cCchhHHHHHHHHHhHHHHhCCCceEEEEeCCCCCCCceEEe
Confidence 5678887777644 333454 56778999999998754
No 380
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=31.87 E-value=38 Score=34.98 Aligned_cols=17 Identities=24% Similarity=0.174 Sum_probs=14.4
Q ss_pred CCcEEEEcCCCCcHHHH
Q 004358 35 KGHCLLEMPTGTGKTIA 51 (759)
Q Consensus 35 ~~~~liEaPTGtGKTla 51 (759)
+..+.+-+|+|+|||-.
T Consensus 129 g~vi~lvG~nGaGKTTl 145 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTT 145 (328)
T ss_dssp SEEEEEECCTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45788999999999974
No 381
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=31.78 E-value=22 Score=33.46 Aligned_cols=16 Identities=25% Similarity=0.434 Sum_probs=14.1
Q ss_pred CcEEEEcCCCCcHHHH
Q 004358 36 GHCLLEMPTGTGKTIA 51 (759)
Q Consensus 36 ~~~liEaPTGtGKTla 51 (759)
..++|.+|.|+|||..
T Consensus 19 ~~I~l~G~~GsGKSTl 34 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSV 34 (202)
T ss_dssp SCEEEECSTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4799999999999963
No 382
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=31.59 E-value=41 Score=35.35 Aligned_cols=29 Identities=24% Similarity=0.315 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhCCcEEEEcCCCCcHHHH
Q 004358 23 SYMLELKRALDAKGHCLLEMPTGTGKTIA 51 (759)
Q Consensus 23 ~~~~~v~~al~~~~~~liEaPTGtGKTla 51 (759)
++...+...-.....+++.+++||||++.
T Consensus 140 ~~~~~~~~~a~~~~~vli~GesGtGKe~l 168 (368)
T 3dzd_A 140 EIKRLIPKIAKSKAPVLITGESGTGKEIV 168 (368)
T ss_dssp HHHHHHHHHHTSCSCEEEECCTTSSHHHH
T ss_pred HHHhhhhhhhccchhheEEeCCCchHHHH
Confidence 33333333334456899999999999963
No 383
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=31.46 E-value=51 Score=33.65 Aligned_cols=35 Identities=23% Similarity=0.208 Sum_probs=21.2
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEc
Q 004358 36 GHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCT 74 (759)
Q Consensus 36 ~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T 74 (759)
+.+++-+|+|+|||...-.-+..+.. .++ +|.+..
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~~l~~---~g~-kV~lv~ 139 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAKMFVD---EGK-SVVLAA 139 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH---TTC-CEEEEE
T ss_pred eEEEEEcCCCChHHHHHHHHHHHHHh---cCC-EEEEEc
Confidence 36788999999999754433333322 244 565543
No 384
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=31.23 E-value=28 Score=44.99 Aligned_cols=41 Identities=17% Similarity=0.123 Sum_probs=28.1
Q ss_pred hCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccchh
Q 004358 34 AKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVH 78 (759)
Q Consensus 34 ~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~~ 78 (759)
.+.++++-+|+|||||.-.+.-+...+. .+. +++|.+-.++
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~---~G~-~v~Fi~~e~~ 1466 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQR---EGK-TCAFIDAEHA 1466 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHT---TTC-CEEEECTTSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH---cCC-cEEEEEcccc
Confidence 5678999999999999866554443332 245 6777665554
No 385
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=31.21 E-value=19 Score=37.31 Aligned_cols=36 Identities=19% Similarity=0.086 Sum_probs=24.5
Q ss_pred CHHHHHHHHHHH---HHHHhCC--cEEEEcCCCCcHHHHHH
Q 004358 18 YPEQYSYMLELK---RALDAKG--HCLLEMPTGTGKTIALL 53 (759)
Q Consensus 18 r~~Q~~~~~~v~---~al~~~~--~~liEaPTGtGKTla~L 53 (759)
...|.++-+.|. +.+-+|- .++.=+.||+|||....
T Consensus 59 ~~~Q~~Vy~~v~~lv~~~l~G~n~tifAYGqTGSGKTyTm~ 99 (330)
T 2h58_A 59 QASQQDVFQEVQALVTSCIDGFNVCIFAYGQTGAGKTYTME 99 (330)
T ss_dssp TCCHHHHHTTTHHHHHHHHTTCCEEEEEESSTTSSHHHHHT
T ss_pred CCCcHhHHHHHHHHHHHHhCCCEEEEEeECCCCCCCcEEEe
Confidence 567877776643 3333453 56678999999998753
No 386
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=31.19 E-value=16 Score=36.26 Aligned_cols=17 Identities=24% Similarity=0.147 Sum_probs=14.2
Q ss_pred CCcEEEEcCCCCcHHHH
Q 004358 35 KGHCLLEMPTGTGKTIA 51 (759)
Q Consensus 35 ~~~~liEaPTGtGKTla 51 (759)
...+++++++|+|||..
T Consensus 4 ~~lIvl~G~pGSGKSTl 20 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTF 20 (260)
T ss_dssp CEEEEEECCTTSSHHHH
T ss_pred CEEEEEEcCCCCCHHHH
Confidence 34688999999999973
No 387
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=30.89 E-value=14 Score=34.02 Aligned_cols=17 Identities=29% Similarity=0.343 Sum_probs=10.4
Q ss_pred CCcEEEEcCCCCcHHHH
Q 004358 35 KGHCLLEMPTGTGKTIA 51 (759)
Q Consensus 35 ~~~~liEaPTGtGKTla 51 (759)
+..++++++.|+|||..
T Consensus 5 ~~~I~l~G~~GsGKST~ 21 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHT 21 (183)
T ss_dssp CCEEEEECCC----CHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45789999999999963
No 388
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=30.57 E-value=25 Score=35.48 Aligned_cols=14 Identities=43% Similarity=0.491 Sum_probs=12.7
Q ss_pred cEEEEcCCCCcHHH
Q 004358 37 HCLLEMPTGTGKTI 50 (759)
Q Consensus 37 ~~liEaPTGtGKTl 50 (759)
.+++-+|+|+|||.
T Consensus 35 livl~G~sGsGKST 48 (287)
T 1gvn_B 35 AFLLGGQPGSGKTS 48 (287)
T ss_dssp EEEEECCTTSCTHH
T ss_pred EEEEECCCCCCHHH
Confidence 58889999999996
No 389
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=30.37 E-value=29 Score=32.95 Aligned_cols=25 Identities=24% Similarity=0.109 Sum_probs=19.5
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHHHh
Q 004358 36 GHCLLEMPTGTGKTIALLSLITSYVLS 62 (759)
Q Consensus 36 ~~~liEaPTGtGKTla~L~~~l~~~~~ 62 (759)
+..+|-+|+|+|||-. +-|+.|+..
T Consensus 24 ~~~~I~G~NgsGKSti--l~ai~~~l~ 48 (203)
T 3qks_A 24 GINLIIGQNGSGKSSL--LDAILVGLY 48 (203)
T ss_dssp EEEEEECCTTSSHHHH--HHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHH--HHHHHHHhc
Confidence 5778899999999963 456777664
No 390
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=30.28 E-value=32 Score=35.81 Aligned_cols=35 Identities=20% Similarity=0.054 Sum_probs=24.7
Q ss_pred CHHHHHHHHHHH----HHHHhCC--cEEEEcCCCCcHHHHH
Q 004358 18 YPEQYSYMLELK----RALDAKG--HCLLEMPTGTGKTIAL 52 (759)
Q Consensus 18 r~~Q~~~~~~v~----~al~~~~--~~liEaPTGtGKTla~ 52 (759)
.-.|.++-+.+. +.+-+|- .++.-+.||+|||...
T Consensus 61 ~~~Q~~vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 61 DAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp TCCHHHHHHHHTHHHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHHhhcCeeEEEecccCCCceEee
Confidence 567888776643 3444554 5677899999999875
No 391
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=30.14 E-value=18 Score=34.63 Aligned_cols=16 Identities=38% Similarity=0.574 Sum_probs=14.1
Q ss_pred CCcEEEEcCCCCcHHH
Q 004358 35 KGHCLLEMPTGTGKTI 50 (759)
Q Consensus 35 ~~~~liEaPTGtGKTl 50 (759)
++.+++|++-|+|||-
T Consensus 2 ~kFI~~EG~dGsGKsT 17 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTT 17 (205)
T ss_dssp CEEEEEECCTTSCHHH
T ss_pred CCEEEEECCCCCcHHH
Confidence 4578999999999997
No 392
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=30.13 E-value=45 Score=34.30 Aligned_cols=33 Identities=27% Similarity=0.301 Sum_probs=20.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEE
Q 004358 37 HCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYC 73 (759)
Q Consensus 37 ~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~ 73 (759)
.+.+-+|+|+|||.....-+..++. .++ +|++.
T Consensus 107 vI~ivG~~G~GKTT~~~~LA~~l~~---~g~-kVlli 139 (320)
T 1zu4_A 107 IFMLVGVNGTGKTTSLAKMANYYAE---LGY-KVLIA 139 (320)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHH---TTC-CEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH---CCC-eEEEE
Confidence 5777899999999754443333332 244 56554
No 393
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=30.05 E-value=34 Score=36.48 Aligned_cols=21 Identities=19% Similarity=-0.059 Sum_probs=17.2
Q ss_pred hCCcEEEEcCCCCcHHHHHHH
Q 004358 34 AKGHCLLEMPTGTGKTIALLS 54 (759)
Q Consensus 34 ~~~~~liEaPTGtGKTla~L~ 54 (759)
.|....|-+|+|+|||.-.+.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~ 197 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHT 197 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHH
Confidence 356899999999999986553
No 394
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=30.02 E-value=28 Score=36.55 Aligned_cols=34 Identities=18% Similarity=0.053 Sum_probs=23.6
Q ss_pred HHHHHHHHHH----HHHHhCC--cEEEEcCCCCcHHHHHH
Q 004358 20 EQYSYMLELK----RALDAKG--HCLLEMPTGTGKTIALL 53 (759)
Q Consensus 20 ~Q~~~~~~v~----~al~~~~--~~liEaPTGtGKTla~L 53 (759)
.|.++-+.+. +.+-+|- .++.=+.||+|||....
T Consensus 84 sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~ 123 (359)
T 3nwn_A 84 SQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMM 123 (359)
T ss_dssp CHHHHHHHHTHHHHHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEEeCCCCCCccEEeC
Confidence 5877766653 3334453 56778999999998754
No 395
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=29.97 E-value=27 Score=36.27 Aligned_cols=16 Identities=31% Similarity=0.241 Sum_probs=13.7
Q ss_pred CcEEEEcCCCCcHHHH
Q 004358 36 GHCLLEMPTGTGKTIA 51 (759)
Q Consensus 36 ~~~liEaPTGtGKTla 51 (759)
..++|-+|||+|||-.
T Consensus 8 ~lI~I~GptgSGKTtl 23 (340)
T 3d3q_A 8 FLIVIVGPTASGKTEL 23 (340)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred ceEEEECCCcCcHHHH
Confidence 3688999999999964
No 396
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=29.70 E-value=27 Score=36.46 Aligned_cols=24 Identities=21% Similarity=0.109 Sum_probs=18.3
Q ss_pred hCCcEEEEcCCCCcHHHHHHHHHH
Q 004358 34 AKGHCLLEMPTGTGKTIALLSLIT 57 (759)
Q Consensus 34 ~~~~~liEaPTGtGKTla~L~~~l 57 (759)
.|....|-+|+|+|||.-.+.-+.
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~ 153 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAV 153 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456788999999999986555433
No 397
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=29.54 E-value=16 Score=35.94 Aligned_cols=43 Identities=12% Similarity=0.186 Sum_probs=28.2
Q ss_pred EEEcCeeeeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHH
Q 004358 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTI 50 (759)
Q Consensus 3 ~~i~~~~v~FPy~~~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTl 50 (759)
+.++++.+.|+-.. ++ ....|--.+..|+...|-+|.|+|||.
T Consensus 4 l~~~~l~~~y~~~~-~~----vl~~vsl~i~~Ge~~~i~G~nGsGKST 46 (237)
T 2cbz_A 4 ITVRNATFTWARSD-PP----TLNGITFSIPEGALVAVVGQVGCGKSS 46 (237)
T ss_dssp EEEEEEEEESCTTS-CC----SEEEEEEEECTTCEEEEECSTTSSHHH
T ss_pred EEEEEEEEEeCCCC-Cc----eeeeeEEEECCCCEEEEECCCCCCHHH
Confidence 67888888775311 11 122222244568899999999999996
No 398
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=29.50 E-value=40 Score=35.33 Aligned_cols=37 Identities=22% Similarity=0.201 Sum_probs=22.4
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEcc
Q 004358 35 KGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTR 75 (759)
Q Consensus 35 ~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~ 75 (759)
++.+.+-+|+|+|||...- .|+.... +.++ +|.+...
T Consensus 157 g~vi~lvG~nGsGKTTll~--~Lag~l~-~~~G-~V~l~g~ 193 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLG--KLAHRLK-NEGT-KVLMAAG 193 (359)
T ss_dssp SEEEEEECCTTSCHHHHHH--HHHHHHH-HTTC-CEEEECC
T ss_pred CeEEEEEcCCCChHHHHHH--HHHhhcc-ccCC-EEEEecc
Confidence 3468889999999997432 2332222 2245 6776654
No 399
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=29.45 E-value=45 Score=42.39 Aligned_cols=41 Identities=17% Similarity=0.145 Sum_probs=27.7
Q ss_pred HHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccc
Q 004358 32 LDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRT 76 (759)
Q Consensus 32 l~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T 76 (759)
+..+...+|.+|+|||||.-.+.-+...+.. +. +++|.|-.
T Consensus 31 i~~G~i~lI~G~pGsGKT~LAlqla~~~~~~---G~-~vlYI~te 71 (1706)
T 3cmw_A 31 LPMGRIVEIYGPESSGKTTLTLQVIAAAQRE---GK-TCAFIDAE 71 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHT---TC-CEEEECTT
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhC---CC-ceEEEEec
Confidence 3446789999999999998766655555442 34 55555443
No 400
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=29.44 E-value=23 Score=37.40 Aligned_cols=36 Identities=22% Similarity=0.111 Sum_probs=25.0
Q ss_pred CHHHHHHHHHHH----HHHHhCC--cEEEEcCCCCcHHHHHH
Q 004358 18 YPEQYSYMLELK----RALDAKG--HCLLEMPTGTGKTIALL 53 (759)
Q Consensus 18 r~~Q~~~~~~v~----~al~~~~--~~liEaPTGtGKTla~L 53 (759)
...|.++-+.+. +.+-+|- .++.=+.||+|||....
T Consensus 79 ~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM~ 120 (372)
T 3b6u_A 79 NAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTME 120 (372)
T ss_dssp TCCHHHHHHHTHHHHHHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred cCchHHHHHHHHHHHHHHHhCCCeeeEEeecCCCCCCCEeEe
Confidence 567888776643 3344453 56678999999998753
No 401
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=29.42 E-value=26 Score=37.04 Aligned_cols=36 Identities=19% Similarity=0.091 Sum_probs=24.6
Q ss_pred CHHHHHHHHHHHH----HHHhCC--cEEEEcCCCCcHHHHHH
Q 004358 18 YPEQYSYMLELKR----ALDAKG--HCLLEMPTGTGKTIALL 53 (759)
Q Consensus 18 r~~Q~~~~~~v~~----al~~~~--~~liEaPTGtGKTla~L 53 (759)
...|.++-+.+.. .+-+|- .++.=+.||+|||....
T Consensus 78 ~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~ 119 (373)
T 2wbe_C 78 ESKQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMV 119 (373)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHT
T ss_pred ccchhHHHHHHHHHHHHHHhCCceEEEEeecCCCCCcceecc
Confidence 4568877766443 333453 56778999999998754
No 402
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=29.22 E-value=22 Score=34.81 Aligned_cols=16 Identities=25% Similarity=0.351 Sum_probs=14.3
Q ss_pred CCcEEEEcCCCCcHHH
Q 004358 35 KGHCLLEMPTGTGKTI 50 (759)
Q Consensus 35 ~~~~liEaPTGtGKTl 50 (759)
...++|.+|.|+|||.
T Consensus 27 ~~~i~l~G~~GsGKST 42 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGT 42 (246)
T ss_dssp CCEEEEECCTTSSHHH
T ss_pred CcEEEEECCCCCCHHH
Confidence 3689999999999996
No 403
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=29.18 E-value=17 Score=33.80 Aligned_cols=15 Identities=27% Similarity=0.534 Sum_probs=13.1
Q ss_pred CcEEEEcCCCCcHHH
Q 004358 36 GHCLLEMPTGTGKTI 50 (759)
Q Consensus 36 ~~~liEaPTGtGKTl 50 (759)
..+++-+|+|+|||.
T Consensus 3 ~ii~l~G~~GaGKST 17 (189)
T 2bdt_A 3 KLYIITGPAGVGKST 17 (189)
T ss_dssp EEEEEECSTTSSHHH
T ss_pred eEEEEECCCCCcHHH
Confidence 467889999999997
No 404
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=29.11 E-value=17 Score=35.44 Aligned_cols=16 Identities=19% Similarity=0.169 Sum_probs=13.7
Q ss_pred CCcEEEEcCCCCcHHH
Q 004358 35 KGHCLLEMPTGTGKTI 50 (759)
Q Consensus 35 ~~~~liEaPTGtGKTl 50 (759)
+..+++|++.|+|||.
T Consensus 2 ~~~i~~~G~~g~GKtt 17 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKST 17 (241)
T ss_dssp CEEEEEEECTTSSHHH
T ss_pred CeEEEEEcCCCCCHHH
Confidence 3468899999999996
No 405
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=29.07 E-value=16 Score=35.80 Aligned_cols=39 Identities=18% Similarity=0.269 Sum_probs=24.6
Q ss_pred HHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEE
Q 004358 31 ALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYC 73 (759)
Q Consensus 31 al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~ 73 (759)
.+..|+...|-+|.|+|||. |+-+++-.. .+..+ .|.+.
T Consensus 27 ~i~~Ge~~~iiG~nGsGKST--Ll~~l~Gl~-~p~~G-~I~~~ 65 (235)
T 3tif_A 27 NIKEGEFVSIMGPSGSGKST--MLNIIGCLD-KPTEG-EVYID 65 (235)
T ss_dssp EECTTCEEEEECSTTSSHHH--HHHHHTTSS-CCSEE-EEEET
T ss_pred EEcCCCEEEEECCCCCcHHH--HHHHHhcCC-CCCce-EEEEC
Confidence 34568899999999999995 333333221 23334 67664
No 406
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=28.90 E-value=52 Score=36.35 Aligned_cols=50 Identities=18% Similarity=0.173 Sum_probs=29.8
Q ss_pred HHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccchhhHHHHHH
Q 004358 31 ALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLA 85 (759)
Q Consensus 31 al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~~l~~Q~~~ 85 (759)
.+..|...+|-+|+|+|||.-...-+ .... +.+. +++|.+...+. .|+..
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~--g~~~-~~G~-~vi~~~~ee~~-~~l~~ 326 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFV--ENAC-ANKE-RAILFAYEESR-AQLLR 326 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHH--HHHH-TTTC-CEEEEESSSCH-HHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH--HHHH-hCCC-CEEEEEEeCCH-HHHHH
Confidence 34556789999999999997544432 2222 2355 66665543332 34443
No 407
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=28.77 E-value=39 Score=35.38 Aligned_cols=36 Identities=19% Similarity=0.124 Sum_probs=24.8
Q ss_pred CHHHHHHHHHHH----HHHHhCC--cEEEEcCCCCcHHHHHH
Q 004358 18 YPEQYSYMLELK----RALDAKG--HCLLEMPTGTGKTIALL 53 (759)
Q Consensus 18 r~~Q~~~~~~v~----~al~~~~--~~liEaPTGtGKTla~L 53 (759)
+-.|.++-+.+. +.+-+|- .++.=+.||+|||....
T Consensus 70 ~a~Q~~vy~~~~~~lv~~~l~G~n~tifAYGqTGSGKTyTm~ 111 (354)
T 3gbj_A 70 YAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMM 111 (354)
T ss_dssp BCCHHHHHHHHHHHHHHHHHTTCCEEEEEEECTTSSHHHHHT
T ss_pred cccHHHHHHHhhHHHHHHHhCCceeEEEeeCCCCCCCceEEe
Confidence 456888766554 3444564 46678999999998753
No 408
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=28.45 E-value=18 Score=34.24 Aligned_cols=18 Identities=22% Similarity=-0.016 Sum_probs=14.7
Q ss_pred hCCcEEEEcCCCCcHHHH
Q 004358 34 AKGHCLLEMPTGTGKTIA 51 (759)
Q Consensus 34 ~~~~~liEaPTGtGKTla 51 (759)
.+..+.|-+|+|+|||..
T Consensus 5 ~~~~i~i~G~~GsGKSTl 22 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTL 22 (211)
T ss_dssp CCEEEEEEESTTSSHHHH
T ss_pred CcEEEEEECCCCCCHHHH
Confidence 455788999999999963
No 409
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=28.28 E-value=26 Score=36.68 Aligned_cols=36 Identities=14% Similarity=0.027 Sum_probs=24.5
Q ss_pred CHHHHHHHHHHHH----HHHhCC--cEEEEcCCCCcHHHHHH
Q 004358 18 YPEQYSYMLELKR----ALDAKG--HCLLEMPTGTGKTIALL 53 (759)
Q Consensus 18 r~~Q~~~~~~v~~----al~~~~--~~liEaPTGtGKTla~L 53 (759)
...|.++-+.+.. .+-+|- .++.=+.||+|||....
T Consensus 58 ~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~ 99 (355)
T 1goj_A 58 SCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMM 99 (355)
T ss_dssp TCCHHHHHHHHTHHHHHHHTTTCCEEEEEECSTTSSHHHHHT
T ss_pred CCccHHHHHHHHHHHHHHHhCCCcceEEEECCCCCCcceEee
Confidence 4568877765433 333453 56778999999998753
No 410
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=28.12 E-value=35 Score=34.51 Aligned_cols=15 Identities=27% Similarity=0.625 Sum_probs=12.6
Q ss_pred cEEEEcCCCCcHHHH
Q 004358 37 HCLLEMPTGTGKTIA 51 (759)
Q Consensus 37 ~~liEaPTGtGKTla 51 (759)
.+.|.+|+|+|||..
T Consensus 33 ii~I~G~sGsGKSTl 47 (290)
T 1odf_A 33 FIFFSGPQGSGKSFT 47 (290)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 577899999999863
No 411
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=27.68 E-value=22 Score=37.13 Aligned_cols=36 Identities=14% Similarity=0.044 Sum_probs=25.4
Q ss_pred CHHHHHHHHHHH----HHHHhCC--cEEEEcCCCCcHHHHHH
Q 004358 18 YPEQYSYMLELK----RALDAKG--HCLLEMPTGTGKTIALL 53 (759)
Q Consensus 18 r~~Q~~~~~~v~----~al~~~~--~~liEaPTGtGKTla~L 53 (759)
...|.++.+.+. +.+-+|- .++.=+.||+|||....
T Consensus 55 ~~tQ~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM~ 96 (349)
T 1t5c_A 55 NETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMM 96 (349)
T ss_dssp TSCHHHHHHHTTHHHHHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCccceeeecCCCCCCCeEEe
Confidence 557888877653 3444554 56678999999998753
No 412
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=27.45 E-value=24 Score=37.04 Aligned_cols=36 Identities=22% Similarity=0.155 Sum_probs=25.0
Q ss_pred CHHHHHHHHHHHH----HHHhCC--cEEEEcCCCCcHHHHHH
Q 004358 18 YPEQYSYMLELKR----ALDAKG--HCLLEMPTGTGKTIALL 53 (759)
Q Consensus 18 r~~Q~~~~~~v~~----al~~~~--~~liEaPTGtGKTla~L 53 (759)
...|.++-+.+.. .+-+|. .++.=+.||+|||....
T Consensus 83 ~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~ 124 (355)
T 3lre_A 83 TSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTML 124 (355)
T ss_dssp TCCHHHHHHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHHHT
T ss_pred CCChHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCceeeec
Confidence 5568887766543 344453 56778999999998753
No 413
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=27.42 E-value=34 Score=36.98 Aligned_cols=36 Identities=19% Similarity=0.113 Sum_probs=25.3
Q ss_pred CHHHHHHHHHHHH----HHHhCC--cEEEEcCCCCcHHHHHH
Q 004358 18 YPEQYSYMLELKR----ALDAKG--HCLLEMPTGTGKTIALL 53 (759)
Q Consensus 18 r~~Q~~~~~~v~~----al~~~~--~~liEaPTGtGKTla~L 53 (759)
+..|.++-+.+.. .+-+|- .++.=+.||+|||....
T Consensus 114 ~asQ~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM~ 155 (443)
T 2owm_A 114 YATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMM 155 (443)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHHT
T ss_pred CCCHHHHHHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEEee
Confidence 4578888776644 333453 56778999999998753
No 414
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=27.19 E-value=28 Score=36.87 Aligned_cols=36 Identities=31% Similarity=0.245 Sum_probs=25.2
Q ss_pred CHHHHHHHHHHH----HHHHhCC--cEEEEcCCCCcHHHHHH
Q 004358 18 YPEQYSYMLELK----RALDAKG--HCLLEMPTGTGKTIALL 53 (759)
Q Consensus 18 r~~Q~~~~~~v~----~al~~~~--~~liEaPTGtGKTla~L 53 (759)
...|.++-+.+. +.+-+|- .++.=+.||+|||...+
T Consensus 76 ~~tQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTM~ 117 (388)
T 3bfn_A 76 RSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTML 117 (388)
T ss_dssp TCCHHHHHHHHTGGGHHHHTTTCCEEEEEESCTTSSHHHHHT
T ss_pred CCCHhHHHHHHHHHHHHHhhcCceeeEeeecCCCCCCCeEee
Confidence 567888777543 3444554 56678999999998753
No 415
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=27.16 E-value=18 Score=35.30 Aligned_cols=43 Identities=21% Similarity=0.343 Sum_probs=26.6
Q ss_pred EEEcCeeeeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHH
Q 004358 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTI 50 (759)
Q Consensus 3 ~~i~~~~v~FPy~~~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTl 50 (759)
+.++++...|+-.. ++ ....|--.+..|+...|-+|.|+|||.
T Consensus 7 l~~~~l~~~y~~~~-~~----il~~vsl~i~~Ge~~~i~G~nGsGKST 49 (229)
T 2pze_A 7 VVMENVTAFWEEGG-TP----VLKDINFKIERGQLLAVAGSTGAGKTS 49 (229)
T ss_dssp EEEEEEEECSSTTS-CC----SEEEEEEEEETTCEEEEECCTTSSHHH
T ss_pred EEEEEEEEEeCCCC-ce----eeeeeEEEEcCCCEEEEECCCCCCHHH
Confidence 56677776664211 11 122222234567899999999999996
No 416
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=27.09 E-value=18 Score=34.85 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=17.5
Q ss_pred HHHhCCcEEEEcCCCCcHHHH
Q 004358 31 ALDAKGHCLLEMPTGTGKTIA 51 (759)
Q Consensus 31 al~~~~~~liEaPTGtGKTla 51 (759)
.+..|+...|-+|.|+|||.-
T Consensus 31 ~i~~Ge~~~iiG~NGsGKSTL 51 (214)
T 1sgw_A 31 TIEKGNVVNFHGPNGIGKTTL 51 (214)
T ss_dssp EEETTCCEEEECCTTSSHHHH
T ss_pred EEcCCCEEEEECCCCCCHHHH
Confidence 445688999999999999963
No 417
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=27.00 E-value=22 Score=34.62 Aligned_cols=17 Identities=29% Similarity=0.260 Sum_probs=14.4
Q ss_pred CCcEEEEcCCCCcHHHH
Q 004358 35 KGHCLLEMPTGTGKTIA 51 (759)
Q Consensus 35 ~~~~liEaPTGtGKTla 51 (759)
+..+++|++.|+|||-.
T Consensus 21 ~~~i~~~G~~g~GKst~ 37 (223)
T 3ld9_A 21 SMFITFEGIDGSGKTTQ 37 (223)
T ss_dssp CEEEEEECSTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45788999999999964
No 418
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=26.85 E-value=25 Score=36.79 Aligned_cols=35 Identities=20% Similarity=0.095 Sum_probs=24.5
Q ss_pred CHHHHHHHHHH----HHHHHhCC--cEEEEcCCCCcHHHHH
Q 004358 18 YPEQYSYMLEL----KRALDAKG--HCLLEMPTGTGKTIAL 52 (759)
Q Consensus 18 r~~Q~~~~~~v----~~al~~~~--~~liEaPTGtGKTla~ 52 (759)
...|.++-+.+ .+.+-+|- .++.=+.||+|||...
T Consensus 67 ~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 67 TSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp TCCHHHHHHHTTHHHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHhCCCceeEEeecCCCCCCCEEe
Confidence 56788776654 33444553 5677899999999875
No 419
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=26.58 E-value=18 Score=35.66 Aligned_cols=63 Identities=11% Similarity=0.163 Sum_probs=35.1
Q ss_pred EEEEcCeeeeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEE
Q 004358 2 IFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYC 73 (759)
Q Consensus 2 ~~~i~~~~v~FPy~~~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~ 73 (759)
.+.++++.+.||-.. . .....|--.+..|+...|-+|.|+|||.- +-+++-.. .+..+ .|.|-
T Consensus 7 ~~~~~~l~~~y~~~~-~----~vl~~vsl~i~~Ge~~~i~G~nGsGKSTL--l~~l~Gl~-~p~~G-~I~i~ 69 (247)
T 2ff7_A 7 DITFRNIRFRYKPDS-P----VILDNINLSIKQGEVIGIVGRSGSGKSTL--TKLIQRFY-IPENG-QVLID 69 (247)
T ss_dssp EEEEEEEEEESSTTS-C----EEEEEEEEEEETTCEEEEECSTTSSHHHH--HHHHTTSS-CCSEE-EEEET
T ss_pred ceeEEEEEEEeCCCC-c----ceeeeeEEEEcCCCEEEEECCCCCCHHHH--HHHHhcCC-CCCCc-EEEEC
Confidence 356677777764111 1 12222223445688999999999999973 33333221 23334 67664
No 420
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=26.47 E-value=52 Score=34.04 Aligned_cols=41 Identities=12% Similarity=0.093 Sum_probs=24.3
Q ss_pred HHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccc
Q 004358 32 LDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRT 76 (759)
Q Consensus 32 l~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T 76 (759)
+..+..+.+-+|+|+|||-- |-....+.. +.+. +|.|.+..
T Consensus 52 ~~~g~~v~i~G~~GaGKSTL-l~~l~g~~~--~~~g-~v~i~~~d 92 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTT-IDALGSLLT--AAGH-KVAVLAVD 92 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHH-HHHHHHHHH--HTTC-CEEEEEEC
T ss_pred cCCCeEEEEECCCCCCHHHH-HHHHHHhhh--hCCC-EEEEEEEc
Confidence 34456889999999999963 222222322 2234 67666543
No 421
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=26.45 E-value=25 Score=37.59 Aligned_cols=36 Identities=19% Similarity=0.154 Sum_probs=25.1
Q ss_pred CHHHHHHHHHH----HHHHHhCC--cEEEEcCCCCcHHHHHH
Q 004358 18 YPEQYSYMLEL----KRALDAKG--HCLLEMPTGTGKTIALL 53 (759)
Q Consensus 18 r~~Q~~~~~~v----~~al~~~~--~~liEaPTGtGKTla~L 53 (759)
...|.++-+.+ .+.+-+|. .++.=+.||+|||....
T Consensus 132 ~~tQ~~Vy~~~~~plV~~~l~G~N~tifAYGQTGSGKTyTM~ 173 (410)
T 1v8k_A 132 TASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMG 173 (410)
T ss_dssp TCCHHHHHHHTTHHHHHHHHTTCEEEEEEEESTTSSHHHHHH
T ss_pred CCChhhhhHHHHHHHHHHHhcCCceeEEeecCCCCCCCeEee
Confidence 56788877654 33444554 56678999999998754
No 422
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=26.37 E-value=17 Score=35.21 Aligned_cols=60 Identities=12% Similarity=0.148 Sum_probs=33.8
Q ss_pred EEEcCeeeeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEE
Q 004358 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYC 73 (759)
Q Consensus 3 ~~i~~~~v~FPy~~~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~ 73 (759)
+.++++.+.|+-. .....|--.+..|+...|-+|.|+|||.- +-+++-.. .+..+ +|.+.
T Consensus 5 l~~~~l~~~y~~~-------~~l~~vsl~i~~Ge~~~iiG~nGsGKSTL--l~~l~Gl~-~p~~G-~i~~~ 64 (224)
T 2pcj_A 5 LRAENIKKVIRGY-------EILKGISLSVKKGEFVSIIGASGSGKSTL--LYILGLLD-APTEG-KVFLE 64 (224)
T ss_dssp EEEEEEEEEETTE-------EEEEEEEEEEETTCEEEEEECTTSCHHHH--HHHHTTSS-CCSEE-EEEET
T ss_pred EEEEeEEEEECCE-------eeEeeeEEEEcCCCEEEEECCCCCCHHHH--HHHHhcCC-CCCce-EEEEC
Confidence 5667776666421 11222222445688999999999999953 33333221 23334 67664
No 423
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=26.34 E-value=30 Score=40.50 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=16.7
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHH
Q 004358 36 GHCLLEMPTGTGKTIALLSLITSY 59 (759)
Q Consensus 36 ~~~liEaPTGtGKTla~L~~~l~~ 59 (759)
..+++.+|+|||||+ |+-+++.
T Consensus 512 ~gvLl~GPPGtGKT~--lAkaiA~ 533 (806)
T 3cf2_A 512 KGVLFYGPPGCGKTL--LAKAIAN 533 (806)
T ss_dssp SCCEEESSTTSSHHH--HHHHHHH
T ss_pred ceEEEecCCCCCchH--HHHHHHH
Confidence 468999999999996 4455543
No 424
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=26.26 E-value=34 Score=35.87 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=17.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHHHHh
Q 004358 37 HCLLEMPTGTGKTIALLSLITSYVLS 62 (759)
Q Consensus 37 ~~liEaPTGtGKTla~L~~~l~~~~~ 62 (759)
..+|-+|||+|||- |+-++.|+..
T Consensus 25 ~~~i~G~NGaGKTT--ll~ai~~al~ 48 (365)
T 3qf7_A 25 ITVVEGPNGAGKSS--LFEAISFALF 48 (365)
T ss_dssp EEEEECCTTSSHHH--HHHHHHHHHH
T ss_pred eEEEECCCCCCHHH--HHHHHHHHhc
Confidence 67799999999995 3355666653
No 425
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=25.98 E-value=26 Score=38.21 Aligned_cols=31 Identities=16% Similarity=-0.181 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHhCC-------cEEEEcCCCCcHHHH
Q 004358 20 EQYSYMLELKRALDAKG-------HCLLEMPTGTGKTIA 51 (759)
Q Consensus 20 ~Q~~~~~~v~~al~~~~-------~~liEaPTGtGKTla 51 (759)
+|...-.++.-++..|. |+++++++|| ||+.
T Consensus 217 G~e~vK~aLll~L~GG~~k~rgdihVLL~G~PGt-KS~L 254 (506)
T 3f8t_A 217 GAEEVGKMLALQLFSCVGKNSERLHVLLAGYPVV-CSEI 254 (506)
T ss_dssp TCHHHHHHHHHHHTTCCSSGGGCCCEEEESCHHH-HHHH
T ss_pred CCHHHHHHHHHHHcCCccccCCceeEEEECCCCh-HHHH
Confidence 44454444455555555 8999999999 9983
No 426
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=25.89 E-value=20 Score=35.77 Aligned_cols=46 Identities=20% Similarity=0.301 Sum_probs=28.5
Q ss_pred EEEEcCeeeeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHH
Q 004358 2 IFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIA 51 (759)
Q Consensus 2 ~~~i~~~~v~FPy~~~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla 51 (759)
.+.++++.+.|+-...+ .....|--.+..|+...|-+|+|+|||.-
T Consensus 17 ~l~i~~l~~~y~~~~~~----~vl~~vsl~i~~Ge~~~i~G~nGsGKSTL 62 (260)
T 2ghi_A 17 NIEFSDVNFSYPKQTNH----RTLKSINFFIPSGTTCALVGHTGSGKSTI 62 (260)
T ss_dssp CEEEEEEEECCTTCCSS----CSEEEEEEEECTTCEEEEECSTTSSHHHH
T ss_pred eEEEEEEEEEeCCCCcC----ceeEeeEEEECCCCEEEEECCCCCCHHHH
Confidence 35677777776532101 11222223445688999999999999963
No 427
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=25.80 E-value=26 Score=32.57 Aligned_cols=15 Identities=27% Similarity=0.406 Sum_probs=12.7
Q ss_pred cEEEEcCCCCcHHHH
Q 004358 37 HCLLEMPTGTGKTIA 51 (759)
Q Consensus 37 ~~liEaPTGtGKTla 51 (759)
++.+-+|.|+|||.-
T Consensus 2 ~i~l~G~nGsGKTTL 16 (178)
T 1ye8_A 2 KIIITGEPGVGKTTL 16 (178)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467899999999974
No 428
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=25.68 E-value=30 Score=32.54 Aligned_cols=17 Identities=41% Similarity=0.624 Sum_probs=14.1
Q ss_pred CCcEEEEcCCCCcHHHH
Q 004358 35 KGHCLLEMPTGTGKTIA 51 (759)
Q Consensus 35 ~~~~liEaPTGtGKTla 51 (759)
|+.+.+-+|+|+|||-.
T Consensus 1 G~~i~i~G~nG~GKTTl 17 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTL 17 (189)
T ss_dssp CCCEEEESCCSSCHHHH
T ss_pred CCEEEEECCCCChHHHH
Confidence 45678899999999963
No 429
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=25.65 E-value=41 Score=35.23 Aligned_cols=35 Identities=17% Similarity=0.082 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHH----HHHhCC--cEEEEcCCCCcHHHHHH
Q 004358 19 PEQYSYMLELKR----ALDAKG--HCLLEMPTGTGKTIALL 53 (759)
Q Consensus 19 ~~Q~~~~~~v~~----al~~~~--~~liEaPTGtGKTla~L 53 (759)
..|.++-+.+.. .+-+|. .++.=+.||+|||....
T Consensus 82 ~sQ~~Vy~~~~~~lv~~~l~G~N~tIfAYGqTGSGKTyTM~ 122 (358)
T 2nr8_A 82 ASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMM 122 (358)
T ss_dssp CCHHHHHHHHTHHHHHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred cCHHHHHHHHHHHHHHHHhCCCceEEEEECCCCCCCceEec
Confidence 457777666543 334454 46667999999998753
No 430
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=25.42 E-value=17 Score=40.95 Aligned_cols=62 Identities=11% Similarity=0.126 Sum_probs=36.4
Q ss_pred EEEcCeeeeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEE
Q 004358 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYC 73 (759)
Q Consensus 3 ~~i~~~~v~FPy~~~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~ 73 (759)
+.++++...||-.. ....+.|--.+..|+...+-+|+|+|||-- +-++.-. ..+..+ +|.+-
T Consensus 342 i~~~~v~~~y~~~~-----~~~l~~i~l~i~~G~~~~ivG~sGsGKSTl--l~~l~g~-~~p~~G-~i~~~ 403 (582)
T 3b5x_A 342 VDVKDVTFTYQGKE-----KPALSHVSFSIPQGKTVALVGRSGSGKSTI--ANLFTRF-YDVDSG-SICLD 403 (582)
T ss_pred EEEEEEEEEcCCCC-----ccccccceEEECCCCEEEEECCCCCCHHHH--HHHHhcC-CCCCCC-EEEEC
Confidence 45566665554211 124445555667789999999999999963 2223222 223445 67664
No 431
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=25.13 E-value=48 Score=35.48 Aligned_cols=28 Identities=18% Similarity=0.236 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhCC--------------------cEEEEcCCCCcHHH
Q 004358 23 SYMLELKRALDAKG--------------------HCLLEMPTGTGKTI 50 (759)
Q Consensus 23 ~~~~~v~~al~~~~--------------------~~liEaPTGtGKTl 50 (759)
..+..|.-.+..|+ .+.+-+|+|+|||-
T Consensus 37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKST 84 (413)
T 1tq4_A 37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSS 84 (413)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHH
T ss_pred HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHH
Confidence 45666666677777 88999999999996
No 432
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=24.89 E-value=18 Score=35.61 Aligned_cols=61 Identities=11% Similarity=0.187 Sum_probs=34.1
Q ss_pred EEEcCeeeeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEE
Q 004358 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYC 73 (759)
Q Consensus 3 ~~i~~~~v~FPy~~~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~ 73 (759)
+.+.++.+.|| .. ++ ....|--.+..|+...|-+|.|+|||.- +-+++-.. .+..+ +|.|.
T Consensus 2 l~~~~l~~~y~-~~-~~----vl~~vsl~i~~Ge~~~i~G~nGsGKSTL--l~~l~Gl~-~p~~G-~i~~~ 62 (243)
T 1mv5_A 2 LSARHVDFAYD-DS-EQ----ILRDISFEAQPNSIIAFAGPSGGGKSTI--FSLLERFY-QPTAG-EITID 62 (243)
T ss_dssp EEEEEEEECSS-SS-SC----SEEEEEEEECTTEEEEEECCTTSSHHHH--HHHHTTSS-CCSBS-CEEET
T ss_pred EEEEEEEEEeC-CC-Cc----eEEEeEEEEcCCCEEEEECCCCCCHHHH--HHHHhcCC-CCCCc-EEEEC
Confidence 56677776664 11 11 1222223445678899999999999963 33333221 23334 57664
No 433
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=24.86 E-value=30 Score=31.59 Aligned_cols=14 Identities=21% Similarity=0.290 Sum_probs=12.7
Q ss_pred cEEEEcCCCCcHHH
Q 004358 37 HCLLEMPTGTGKTI 50 (759)
Q Consensus 37 ~~liEaPTGtGKTl 50 (759)
.++|-+|.|+|||.
T Consensus 6 ~i~i~G~~GsGKsT 19 (175)
T 1via_A 6 NIVFIGFMGSGKST 19 (175)
T ss_dssp CEEEECCTTSCHHH
T ss_pred EEEEEcCCCCCHHH
Confidence 68899999999986
No 434
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=24.82 E-value=21 Score=35.49 Aligned_cols=60 Identities=17% Similarity=0.334 Sum_probs=34.0
Q ss_pred EEEcCeeeeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEE
Q 004358 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYC 73 (759)
Q Consensus 3 ~~i~~~~v~FPy~~~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~ 73 (759)
+.++++.+.|+- + .....|--.+..|+...|-+|.|+|||.- +-+++-.. .+..+ .|.+.
T Consensus 8 l~i~~l~~~y~~---~----~vl~~vsl~i~~Ge~~~liG~nGsGKSTL--lk~l~Gl~-~p~~G-~i~~~ 67 (257)
T 1g6h_A 8 LRTENIVKYFGE---F----KALDGVSISVNKGDVTLIIGPNGSGKSTL--INVITGFL-KADEG-RVYFE 67 (257)
T ss_dssp EEEEEEEEEETT---E----EEEEEECCEEETTCEEEEECSTTSSHHHH--HHHHTTSS-CCSEE-EEEET
T ss_pred EEEeeeEEEECC---E----eeEeeeEEEEeCCCEEEEECCCCCCHHHH--HHHHhCCC-CCCCc-EEEEC
Confidence 566777766641 1 12222333455688999999999999963 33333221 23334 67664
No 435
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=24.79 E-value=65 Score=36.12 Aligned_cols=36 Identities=14% Similarity=0.106 Sum_probs=24.9
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEE-Ecc
Q 004358 36 GHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIY-CTR 75 (759)
Q Consensus 36 ~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~-~T~ 75 (759)
..+++.+..|+|||.....-|...++. +. ||++ .+-
T Consensus 9 ~i~~~sgkGGvGKTT~a~~lA~~lA~~---G~-rVLlvd~D 45 (589)
T 1ihu_A 9 PYLFFTGKGGVGKTSISCATAIRLAEQ---GK-RVLLVSTD 45 (589)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHT---TC-CEEEEECC
T ss_pred EEEEEeCCCcCHHHHHHHHHHHHHHHC---CC-cEEEEECC
Confidence 578889999999998776666665542 44 5555 443
No 436
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=24.76 E-value=60 Score=30.30 Aligned_cols=32 Identities=16% Similarity=0.081 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccc
Q 004358 38 CLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRT 76 (759)
Q Consensus 38 ~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T 76 (759)
.+|-+|+|+|||.-.. .++.. ..+ .++++|..
T Consensus 2 ilV~Gg~~SGKS~~A~----~la~~--~~~-~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAE----ALIGD--APQ-VLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHH----HHHCS--CSS-EEEEECCC
T ss_pred EEEECCCCCcHHHHHH----HHHhc--CCC-eEEEecCC
Confidence 5788999999996322 22222 234 67777754
No 437
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=24.64 E-value=27 Score=34.21 Aligned_cols=30 Identities=13% Similarity=-0.215 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHhCCcEEEEcCCCCcHHHH
Q 004358 22 YSYMLELKRALDAKGHCLLEMPTGTGKTIA 51 (759)
Q Consensus 22 ~~~~~~v~~al~~~~~~liEaPTGtGKTla 51 (759)
......|--.+..+..+.|-+|.|+|||..
T Consensus 12 ~~~l~~isl~i~~g~iigI~G~~GsGKSTl 41 (245)
T 2jeo_A 12 DLGTENLYFQSMRPFLIGVSGGTASGKSTV 41 (245)
T ss_dssp -----------CCSEEEEEECSTTSSHHHH
T ss_pred ceeecceeccCCCCEEEEEECCCCCCHHHH
Confidence 345555655666777888999999999964
No 438
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=24.51 E-value=29 Score=37.10 Aligned_cols=35 Identities=17% Similarity=0.070 Sum_probs=23.5
Q ss_pred CHHHHHHHHHHHH---HHHhCC--cEEEEcCCCCcHHHHH
Q 004358 18 YPEQYSYMLELKR---ALDAKG--HCLLEMPTGTGKTIAL 52 (759)
Q Consensus 18 r~~Q~~~~~~v~~---al~~~~--~~liEaPTGtGKTla~ 52 (759)
.-.|.++-+.|.. .+-+|- .++.-+.||+|||...
T Consensus 117 ~~~Q~~Vf~~v~plv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 117 LSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp TCCHHHHHTTTHHHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 4567776655433 333453 5677899999999875
No 439
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=24.36 E-value=21 Score=35.27 Aligned_cols=19 Identities=32% Similarity=0.370 Sum_probs=16.5
Q ss_pred HHhCCcEEEEcCCCCcHHH
Q 004358 32 LDAKGHCLLEMPTGTGKTI 50 (759)
Q Consensus 32 l~~~~~~liEaPTGtGKTl 50 (759)
+..|+...|-+|.|+|||.
T Consensus 23 i~~Ge~~~liG~NGsGKST 41 (249)
T 2qi9_C 23 VRAGEILHLVGPNGAGKST 41 (249)
T ss_dssp EETTCEEEEECCTTSSHHH
T ss_pred EcCCCEEEEECCCCCcHHH
Confidence 4567899999999999996
No 440
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=24.31 E-value=29 Score=36.75 Aligned_cols=36 Identities=19% Similarity=0.154 Sum_probs=25.2
Q ss_pred CHHHHHHHHHH----HHHHHhCC--cEEEEcCCCCcHHHHHH
Q 004358 18 YPEQYSYMLEL----KRALDAKG--HCLLEMPTGTGKTIALL 53 (759)
Q Consensus 18 r~~Q~~~~~~v----~~al~~~~--~~liEaPTGtGKTla~L 53 (759)
...|.++-+.+ .+.+-+|. .++.=+.||+|||....
T Consensus 112 ~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~ 153 (387)
T 2heh_A 112 TASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMG 153 (387)
T ss_dssp TCCHHHHHHHTTHHHHHHHHTTCEEEEEEESCTTSSHHHHHC
T ss_pred CCCceeehhhhHHHHHHHHhcCCceEEEEecCCCCCCCeEec
Confidence 56788877654 33444554 56778999999998764
No 441
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=24.29 E-value=59 Score=42.03 Aligned_cols=42 Identities=17% Similarity=0.115 Sum_probs=29.5
Q ss_pred HhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccchh
Q 004358 33 DAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVH 78 (759)
Q Consensus 33 ~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T~~ 78 (759)
..+.++++.+|+|||||.-.+.-+...++ .+. +++|.|-.++
T Consensus 1079 ~~g~~vll~G~~GtGKT~la~~~~~ea~k---~Ge-~~~Fit~ee~ 1120 (2050)
T 3cmu_A 1079 PMGRIVEIYGPESSGKTTLTLQVIAAAQR---EGK-TCAFIDAEHA 1120 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHT---TTC-CEEEECTTSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHH---cCC-eEEEEEcccc
Confidence 35578999999999999866554444332 256 7888876654
No 442
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=24.27 E-value=22 Score=35.19 Aligned_cols=42 Identities=14% Similarity=0.150 Sum_probs=27.1
Q ss_pred EEEcCeeeeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHH
Q 004358 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIA 51 (759)
Q Consensus 3 ~~i~~~~v~FPy~~~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla 51 (759)
+.+.++.+.|+- ++ ....|-=.+..|+...|-+|.|+|||.-
T Consensus 4 l~~~~l~~~y~~---~~----vl~~vsl~i~~Ge~~~l~G~nGsGKSTL 45 (250)
T 2d2e_A 4 LEIRDLWASIDG---ET----ILKGVNLVVPKGEVHALMGPNGAGKSTL 45 (250)
T ss_dssp EEEEEEEEEETT---EE----EEEEEEEEEETTCEEEEECSTTSSHHHH
T ss_pred EEEEeEEEEECC---EE----EEeceEEEEcCCCEEEEECCCCCCHHHH
Confidence 567777776641 11 1222222345688999999999999973
No 443
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=24.24 E-value=71 Score=34.36 Aligned_cols=34 Identities=21% Similarity=0.158 Sum_probs=20.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEE
Q 004358 37 HCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYC 73 (759)
Q Consensus 37 ~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~ 73 (759)
.+++-+++|+|||....--|..++.. .+. ||.+.
T Consensus 102 vI~ivG~~GvGKTT~a~~LA~~l~~~--~G~-kVllv 135 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLGKFLREK--HKK-KVLVV 135 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHT--SCC-CEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHh--cCC-eEEEE
Confidence 46667999999998655444333332 134 55544
No 444
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=24.23 E-value=22 Score=34.93 Aligned_cols=60 Identities=15% Similarity=0.222 Sum_probs=33.5
Q ss_pred EEEcCeeeeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEE
Q 004358 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYC 73 (759)
Q Consensus 3 ~~i~~~~v~FPy~~~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~ 73 (759)
+.++++.+.|+-. + ....|--.+..|+...|-+|.|+|||.- +-+++-.. .+..+ .|.+.
T Consensus 7 l~~~~l~~~y~~~---~----vl~~vsl~i~~Ge~~~l~G~nGsGKSTL--l~~l~Gl~-~p~~G-~i~~~ 66 (240)
T 1ji0_A 7 LEVQSLHVYYGAI---H----AIKGIDLKVPRGQIVTLIGANGAGKTTT--LSAIAGLV-RAQKG-KIIFN 66 (240)
T ss_dssp EEEEEEEEEETTE---E----EEEEEEEEEETTCEEEEECSTTSSHHHH--HHHHTTSS-CCSEE-EEEET
T ss_pred EEEEeEEEEECCe---e----EEeeeEEEEcCCCEEEEECCCCCCHHHH--HHHHhCCC-CCCCc-eEEEC
Confidence 5566776666421 1 1222222345678999999999999963 33333221 23334 67664
No 445
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=24.12 E-value=22 Score=35.32 Aligned_cols=39 Identities=26% Similarity=0.284 Sum_probs=24.6
Q ss_pred HHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEE
Q 004358 31 ALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYC 73 (759)
Q Consensus 31 al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~ 73 (759)
.+..|+...|-+|.|+|||.- +-+++-.. .+..+ .|.+.
T Consensus 37 ~i~~Gei~~l~G~NGsGKSTL--lk~l~Gl~-~p~~G-~I~~~ 75 (256)
T 1vpl_A 37 EIEEGEIFGLIGPNGAGKTTT--LRIISTLI-KPSSG-IVTVF 75 (256)
T ss_dssp EECTTCEEEEECCTTSSHHHH--HHHHTTSS-CCSEE-EEEET
T ss_pred EEcCCcEEEEECCCCCCHHHH--HHHHhcCC-CCCce-EEEEC
Confidence 345678999999999999963 33333221 23334 67664
No 446
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=23.97 E-value=33 Score=31.51 Aligned_cols=16 Identities=25% Similarity=0.328 Sum_probs=13.6
Q ss_pred CcEEEEcCCCCcHHHH
Q 004358 36 GHCLLEMPTGTGKTIA 51 (759)
Q Consensus 36 ~~~liEaPTGtGKTla 51 (759)
..++|.+|+|+|||..
T Consensus 3 ~~I~l~G~~GsGKsT~ 18 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTI 18 (184)
T ss_dssp CSEEEECSTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 4688999999999963
No 447
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=23.95 E-value=26 Score=36.97 Aligned_cols=36 Identities=17% Similarity=0.086 Sum_probs=24.6
Q ss_pred CHHHHHHHHHH---HHHHHhCC--cEEEEcCCCCcHHHHHH
Q 004358 18 YPEQYSYMLEL---KRALDAKG--HCLLEMPTGTGKTIALL 53 (759)
Q Consensus 18 r~~Q~~~~~~v---~~al~~~~--~~liEaPTGtGKTla~L 53 (759)
...|.+.-+.+ .+.+-+|- .++.=+.||+|||....
T Consensus 58 ~~~Q~~Vy~~~~~lv~~~l~G~n~tifAYGqTGSGKTyTM~ 98 (369)
T 3cob_A 58 NATQDDVFEDTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIY 98 (369)
T ss_dssp TCCHHHHHHTTTHHHHHHHTTCEEEEEEEECTTSSHHHHHT
T ss_pred CCCcceehhhhhhhhHhhhcCCceEEEEECCCCCCCeEeec
Confidence 56788776654 33334554 56678999999998753
No 448
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=23.82 E-value=49 Score=35.60 Aligned_cols=17 Identities=35% Similarity=0.294 Sum_probs=13.9
Q ss_pred cEEEEcCCCCcHHHHHH
Q 004358 37 HCLLEMPTGTGKTIALL 53 (759)
Q Consensus 37 ~~liEaPTGtGKTla~L 53 (759)
.+++-+|+|+|||....
T Consensus 101 vI~ivG~~GvGKTTla~ 117 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAA 117 (432)
T ss_dssp CEEEECCSSSSTTHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 68889999999997543
No 449
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=23.74 E-value=23 Score=35.46 Aligned_cols=21 Identities=19% Similarity=0.300 Sum_probs=17.5
Q ss_pred HHHhCCcEEEEcCCCCcHHHH
Q 004358 31 ALDAKGHCLLEMPTGTGKTIA 51 (759)
Q Consensus 31 al~~~~~~liEaPTGtGKTla 51 (759)
.+..|+.+.|-+|.|+|||.-
T Consensus 42 ~i~~Ge~~~l~G~NGsGKSTL 62 (267)
T 2zu0_C 42 DVHPGEVHAIMGPNGSGKSTL 62 (267)
T ss_dssp EECTTCEEEEECCTTSSHHHH
T ss_pred EEcCCCEEEEECCCCCCHHHH
Confidence 345688999999999999963
No 450
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=23.68 E-value=22 Score=35.19 Aligned_cols=42 Identities=17% Similarity=0.257 Sum_probs=27.3
Q ss_pred EEEcCeeeeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHH
Q 004358 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTI 50 (759)
Q Consensus 3 ~~i~~~~v~FPy~~~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTl 50 (759)
+.++++.+.|+- . ++ ....|--.+..|+...|-+|.|+|||.
T Consensus 5 l~i~~l~~~y~~-~-~~----vl~~isl~i~~Ge~~~l~G~nGsGKST 46 (253)
T 2nq2_C 5 LSVENLGFYYQA-E-NF----LFQQLNFDLNKGDILAVLGQNGCGKST 46 (253)
T ss_dssp EEEEEEEEEETT-T-TE----EEEEEEEEEETTCEEEEECCSSSSHHH
T ss_pred EEEeeEEEEeCC-C-Ce----EEEEEEEEECCCCEEEEECCCCCCHHH
Confidence 677777777641 1 11 122222244568899999999999996
No 451
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=23.66 E-value=32 Score=32.81 Aligned_cols=16 Identities=25% Similarity=0.418 Sum_probs=13.6
Q ss_pred CCcEEEEcCCCCcHHH
Q 004358 35 KGHCLLEMPTGTGKTI 50 (759)
Q Consensus 35 ~~~~liEaPTGtGKTl 50 (759)
+..+.|-+|+|+|||.
T Consensus 5 ~~~i~i~G~~GsGKST 20 (227)
T 1cke_A 5 APVITIDGPSGAGKGT 20 (227)
T ss_dssp SCEEEEECCTTSSHHH
T ss_pred CeEEEEECCCCCCHHH
Confidence 3568899999999986
No 452
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=23.63 E-value=54 Score=32.59 Aligned_cols=49 Identities=8% Similarity=-0.052 Sum_probs=25.3
Q ss_pred CCcEEEEcCCCCcHH-HHHHHHHHHHHHhCCCCCcEEEEEccchhhHHHHHHHHHh
Q 004358 35 KGHCLLEMPTGTGKT-IALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKL 89 (759)
Q Consensus 35 ~~~~liEaPTGtGKT-la~L~~~l~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~ 89 (759)
+...++.+++|+||| +++-.. .+-++ .+. +++|.|-..+. +++++..+.
T Consensus 21 gs~~li~g~p~~~~~~l~~qfl-~~g~~---~Ge-~~~~~~~~e~~-~~l~~~~~~ 70 (260)
T 3bs4_A 21 SLILIHEEDASSRGKDILFYIL-SRKLK---SDN-LVGMFSISYPL-QLIIRILSR 70 (260)
T ss_dssp CEEEEEECSGGGCHHHHHHHHH-HHHHH---TTC-EEEEEECSSCH-HHHHHHHHH
T ss_pred CcEEEEEeCCCccHHHHHHHHH-HHHHH---CCC-cEEEEEEeCCH-HHHHHHHHH
Confidence 346777755555555 443322 22222 256 77777665443 355555444
No 453
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=23.62 E-value=35 Score=32.46 Aligned_cols=16 Identities=25% Similarity=0.204 Sum_probs=13.7
Q ss_pred CcEEEEcCCCCcHHHH
Q 004358 36 GHCLLEMPTGTGKTIA 51 (759)
Q Consensus 36 ~~~liEaPTGtGKTla 51 (759)
..+.|++|.|+|||..
T Consensus 5 ~~I~i~G~~GSGKST~ 20 (218)
T 1vht_A 5 YIVALTGGIGSGKSTV 20 (218)
T ss_dssp EEEEEECCTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4688999999999973
No 454
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=23.62 E-value=23 Score=35.37 Aligned_cols=68 Identities=16% Similarity=0.242 Sum_probs=37.4
Q ss_pred CEEEEcCeeeeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEc
Q 004358 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCT 74 (759)
Q Consensus 1 m~~~i~~~~v~FPy~~~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T 74 (759)
|-+.++++.+.|+..... +......|--.+..|+...|-+|.|+|||.- +-+++-.. .+..+ .|.+.-
T Consensus 1 ~~l~~~~l~~~y~~~~~~--~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTL--l~~i~Gl~-~p~~G-~I~~~g 68 (266)
T 2yz2_A 1 MRIEVVNVSHIFHRGTPL--EKKALENVSLVINEGECLLVAGNTGSGKSTL--LQIVAGLI-EPTSG-DVLYDG 68 (266)
T ss_dssp CCEEEEEEEEEESTTSTT--CEEEEEEEEEEECTTCEEEEECSTTSSHHHH--HHHHTTSS-CCSEE-EEEETT
T ss_pred CEEEEEEEEEEecCCCcc--ccceeeeeEEEEcCCCEEEEECCCCCcHHHH--HHHHhCCC-CCCCc-EEEECC
Confidence 457788888877521100 0011222222445678999999999999963 33333221 23334 677643
No 455
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=23.47 E-value=71 Score=32.29 Aligned_cols=35 Identities=20% Similarity=0.193 Sum_probs=20.5
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEc
Q 004358 36 GHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCT 74 (759)
Q Consensus 36 ~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T 74 (759)
+.+.+-+|+|+|||.....-+..+.. .+. +|.+..
T Consensus 99 ~~i~i~g~~G~GKTT~~~~la~~~~~---~~~-~v~l~~ 133 (295)
T 1ls1_A 99 NLWFLVGLQGSGKTTTAAKLALYYKG---KGR-RPLLVA 133 (295)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHHHHH---TTC-CEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH---cCC-eEEEec
Confidence 35566699999999754443333332 234 565553
No 456
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=23.36 E-value=23 Score=35.45 Aligned_cols=63 Identities=21% Similarity=0.317 Sum_probs=34.8
Q ss_pred EEEcCeeeeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEE
Q 004358 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYC 73 (759)
Q Consensus 3 ~~i~~~~v~FPy~~~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~ 73 (759)
+.++++.+.|+-...+ .....|--.+..|+...|-+|.|+|||. |+-+|+-.. .+..+ .|.|.
T Consensus 17 l~~~~l~~~y~~~~~~----~vl~~vsl~i~~Ge~~~i~G~nGsGKST--Llk~l~Gl~-~p~~G-~I~~~ 79 (271)
T 2ixe_A 17 VKFQDVSFAYPNHPNV----QVLQGLTFTLYPGKVTALVGPNGSGKST--VAALLQNLY-QPTGG-KVLLD 79 (271)
T ss_dssp EEEEEEEECCTTCTTS----CCEEEEEEEECTTCEEEEECSTTSSHHH--HHHHHTTSS-CCSEE-EEEET
T ss_pred EEEEEEEEEeCCCCCc----eeeEeeEEEECCCCEEEEECCCCCCHHH--HHHHHhcCC-CCCCC-EEEEC
Confidence 5667777666431000 1122222344567899999999999996 333333221 23334 67764
No 457
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=23.26 E-value=1.6e+02 Score=29.67 Aligned_cols=34 Identities=18% Similarity=0.276 Sum_probs=21.9
Q ss_pred CcEEEEcC-CCCcHHHHHHHHHHHHHHhCCCCCcEEEEE
Q 004358 36 GHCLLEMP-TGTGKTIALLSLITSYVLSKPENPVKLIYC 73 (759)
Q Consensus 36 ~~~liEaP-TGtGKTla~L~~~l~~~~~~~~~~~kvi~~ 73 (759)
+.+++-++ .|+|||.....-|..+++. ++ ||++.
T Consensus 105 kvI~vts~kgG~GKTtva~nLA~~lA~~---G~-rVLLI 139 (299)
T 3cio_A 105 NILMITGATPDSGKTFVSSTLAAVIAQS---DQ-KVLFI 139 (299)
T ss_dssp CEEEEEESSSSSCHHHHHHHHHHHHHHT---TC-CEEEE
T ss_pred eEEEEECCCCCCChHHHHHHHHHHHHhC---CC-cEEEE
Confidence 45656655 6999998766655555542 45 66665
No 458
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=23.25 E-value=31 Score=32.54 Aligned_cols=16 Identities=25% Similarity=0.023 Sum_probs=13.7
Q ss_pred CCcEEEEcCCCCcHHH
Q 004358 35 KGHCLLEMPTGTGKTI 50 (759)
Q Consensus 35 ~~~~liEaPTGtGKTl 50 (759)
+..+.|.+|+|+|||.
T Consensus 21 ~~~i~i~G~~GsGKST 36 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTT 36 (207)
T ss_dssp CEEEEEEESTTSSHHH
T ss_pred CeEEEEECCCCCCHHH
Confidence 4567899999999996
No 459
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=23.18 E-value=54 Score=33.31 Aligned_cols=18 Identities=11% Similarity=0.015 Sum_probs=14.6
Q ss_pred hCCcEEEEcCCCCcHHHH
Q 004358 34 AKGHCLLEMPTGTGKTIA 51 (759)
Q Consensus 34 ~~~~~liEaPTGtGKTla 51 (759)
.+..+.|-+|+|+|||..
T Consensus 79 ~g~iigI~G~~GsGKSTl 96 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTT 96 (308)
T ss_dssp CCEEEEEEECTTSSHHHH
T ss_pred CCEEEEEECCCCCCHHHH
Confidence 345788899999999963
No 460
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=23.13 E-value=42 Score=37.49 Aligned_cols=29 Identities=17% Similarity=0.323 Sum_probs=20.3
Q ss_pred HHHHHHHHHHh----CCcEEEEcCCCCcHHHHH
Q 004358 24 YMLELKRALDA----KGHCLLEMPTGTGKTIAL 52 (759)
Q Consensus 24 ~~~~v~~al~~----~~~~liEaPTGtGKTla~ 52 (759)
.+..+.+.+.. ...++|.+|.|+|||...
T Consensus 132 ~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa 164 (591)
T 1z6t_A 132 LVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLA 164 (591)
T ss_dssp HHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHH
T ss_pred HHHHHHHHHhcccCCCceEEEEcCCCCCHHHHH
Confidence 34455666642 347889999999999743
No 461
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=23.05 E-value=58 Score=30.73 Aligned_cols=33 Identities=21% Similarity=0.198 Sum_probs=23.3
Q ss_pred CHHHHHHHHHHHHHHHhC--CcEEEEcCCCCcHHH
Q 004358 18 YPEQYSYMLELKRALDAK--GHCLLEMPTGTGKTI 50 (759)
Q Consensus 18 r~~Q~~~~~~v~~al~~~--~~~liEaPTGtGKTl 50 (759)
-+...+.++.+...+..+ ..+++-+++|+|||-
T Consensus 11 l~~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTT 45 (221)
T 2wsm_A 11 LAENKRLAEKNREALRESGTVAVNIMGAIGSGKTL 45 (221)
T ss_dssp CHHHHHHHHHHHHHHHHHTCEEEEEEECTTSCHHH
T ss_pred HhhcHHHHHHHHHhhcccCceEEEEEcCCCCCHHH
Confidence 355566666666666544 367788999999995
No 462
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=23.04 E-value=37 Score=37.62 Aligned_cols=51 Identities=16% Similarity=0.253 Sum_probs=31.7
Q ss_pred HHHHHHH-HHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEccc
Q 004358 24 YMLELKR-ALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRT 76 (759)
Q Consensus 24 ~~~~v~~-al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~T 76 (759)
..+.|.- .+..|+..+|.+|+|+|||.-..+-++.-+.. +..+ .|+|....
T Consensus 27 ~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~-~~~g-~i~v~g~~ 78 (525)
T 1tf7_A 27 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE-FDEP-GVFVTFEE 78 (525)
T ss_dssp THHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHH-HCCC-EEEEESSS
T ss_pred hHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh-CCCC-EEEEEEeC
Confidence 4555555 56678899999999999998555422232322 1234 56666543
No 463
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=22.88 E-value=23 Score=35.60 Aligned_cols=62 Identities=13% Similarity=0.210 Sum_probs=36.7
Q ss_pred EEEcCeeeeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEc
Q 004358 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCT 74 (759)
Q Consensus 3 ~~i~~~~v~FPy~~~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T 74 (759)
+.+.++.+.|+-.. + ....|--.+..|+.+.|-+|.|+|||.- +-+++-.. .+..+ .|.+.-
T Consensus 8 l~i~~ls~~y~~~~--~----~L~~isl~i~~Ge~~~iiGpnGsGKSTL--l~~l~Gl~-~p~~G-~I~~~G 69 (275)
T 3gfo_A 8 LKVEELNYNYSDGT--H----ALKGINMNIKRGEVTAILGGNGVGKSTL--FQNFNGIL-KPSSG-RILFDN 69 (275)
T ss_dssp EEEEEEEEECTTSC--E----EEEEEEEEEETTSEEEEECCTTSSHHHH--HHHHTTSS-CCSEE-EEEETT
T ss_pred EEEEEEEEEECCCC--e----EEEeeEEEEcCCCEEEEECCCCCCHHHH--HHHHHcCC-CCCCe-EEEECC
Confidence 67888888876432 1 2222323445688999999999999963 33333221 13334 676643
No 464
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=22.58 E-value=25 Score=35.07 Aligned_cols=42 Identities=12% Similarity=0.101 Sum_probs=26.9
Q ss_pred EEEcCeeeeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHH
Q 004358 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIA 51 (759)
Q Consensus 3 ~~i~~~~v~FPy~~~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla 51 (759)
+.+.++.+.|+-. .....|--.+..|+...|-+|.|+|||.-
T Consensus 7 l~i~~l~~~y~~~-------~vl~~vsl~i~~Ge~~~liG~nGsGKSTL 48 (262)
T 1b0u_A 7 LHVIDLHKRYGGH-------EVLKGVSLQARAGDVISIIGSSGSGKSTF 48 (262)
T ss_dssp EEEEEEEEEETTE-------EEEEEEEEEECTTCEEEEECCTTSSHHHH
T ss_pred EEEeeEEEEECCE-------EEEEeeEEEEcCCCEEEEECCCCCCHHHH
Confidence 5677777666421 11222222445678999999999999963
No 465
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=22.26 E-value=1.4e+02 Score=30.76 Aligned_cols=34 Identities=21% Similarity=0.205 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHh--C--CcEEEEcCCCCcHHHHH
Q 004358 19 PEQYSYMLELKRALDA--K--GHCLLEMPTGTGKTIAL 52 (759)
Q Consensus 19 ~~Q~~~~~~v~~al~~--~--~~~liEaPTGtGKTla~ 52 (759)
+...+.+..+.+.+.. + ..+++-+++|+|||...
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~ 96 (355)
T 3p32_A 59 PDHREQAQQLLLRLLPDSGNAHRVGITGVPGVGKSTAI 96 (355)
T ss_dssp HHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSSHHHHH
T ss_pred hhhHHHHHHHHHHhHhhcCCceEEEEECCCCCCHHHHH
Confidence 4444455566666642 2 26788999999999743
No 466
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=22.09 E-value=1.9e+02 Score=28.59 Aligned_cols=48 Identities=13% Similarity=0.173 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHh------CCcEEEEcC-CCCcHHHHHHHHHHHHHHhCCCCCcEEEEE
Q 004358 22 YSYMLELKRALDA------KGHCLLEMP-TGTGKTIALLSLITSYVLSKPENPVKLIYC 73 (759)
Q Consensus 22 ~~~~~~v~~al~~------~~~~liEaP-TGtGKTla~L~~~l~~~~~~~~~~~kvi~~ 73 (759)
.|....+...|.- .+.+++-++ .|+|||.....-|..+++. ++ ||++.
T Consensus 63 ~Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~---G~-rVLLI 117 (271)
T 3bfv_A 63 SEKFRGIRSNIMFANPDSAVQSIVITSEAPGAGKSTIAANLAVAYAQA---GY-KTLIV 117 (271)
T ss_dssp HHHHHHHHHHHHHSSTTCCCCEEEEECSSTTSSHHHHHHHHHHHHHHT---TC-CEEEE
T ss_pred HHHHHHHHHHHHhhccCCCCeEEEEECCCCCCcHHHHHHHHHHHHHhC---CC-eEEEE
Confidence 3444455544432 135666655 7999998766655555542 45 66664
No 467
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=21.93 E-value=28 Score=40.92 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=17.5
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHH
Q 004358 35 KGHCLLEMPTGTGKTIALLSLITSY 59 (759)
Q Consensus 35 ~~~~liEaPTGtGKTla~L~~~l~~ 59 (759)
++++++.+|+|||||.. +-+++.
T Consensus 511 ~~~vLL~GppGtGKT~L--akala~ 533 (806)
T 1ypw_A 511 SKGVLFYGPPGCGKTLL--AKAIAN 533 (806)
T ss_dssp CCCCCCBCCTTSSHHHH--HHHHHH
T ss_pred CceeEEECCCCCCHHHH--HHHHHH
Confidence 46799999999999984 444444
No 468
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=21.84 E-value=26 Score=35.07 Aligned_cols=40 Identities=15% Similarity=0.167 Sum_probs=25.5
Q ss_pred HHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEc
Q 004358 31 ALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCT 74 (759)
Q Consensus 31 al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T 74 (759)
.+..|+...|-+|.|+|||.- +-+++-.. .+..+ .|.+--
T Consensus 33 ~i~~Ge~~~liG~nGsGKSTL--l~~l~Gl~-~p~~G-~I~~~g 72 (266)
T 4g1u_C 33 HIASGEMVAIIGPNGAGKSTL--LRLLTGYL-SPSHG-ECHLLG 72 (266)
T ss_dssp EEETTCEEEEECCTTSCHHHH--HHHHTSSS-CCSSC-EEEETT
T ss_pred EEcCCCEEEEECCCCCcHHHH--HHHHhcCC-CCCCc-EEEECC
Confidence 345688999999999999963 33333221 23345 677753
No 469
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=21.70 E-value=56 Score=41.51 Aligned_cols=37 Identities=16% Similarity=0.138 Sum_probs=25.2
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEEcc
Q 004358 35 KGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTR 75 (759)
Q Consensus 35 ~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~T~ 75 (759)
+..++|-+|+|+|||.-.+.-+...+.. +. +|+|.+-
T Consensus 732 G~lVlI~G~PG~GKTtLal~lA~~aa~~---g~-~VlyiS~ 768 (1706)
T 3cmw_A 732 GRIVEIYGPESSGKTTLTLQVIAAAQRE---GK-TCAFIDA 768 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT---TC-CEEEECT
T ss_pred CceEEEECCCCCCcHHHHHHHHHHHHHc---CC-CeEEEec
Confidence 4579999999999998766655554432 34 5666543
No 470
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=21.69 E-value=26 Score=35.33 Aligned_cols=42 Identities=14% Similarity=0.223 Sum_probs=27.2
Q ss_pred EEEEcCeeeeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHH
Q 004358 2 IFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTI 50 (759)
Q Consensus 2 ~~~i~~~~v~FPy~~~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTl 50 (759)
.+.++++.+.|+-. .....|-=.+..|+...|-+|.|+|||.
T Consensus 21 ~l~~~~l~~~y~~~-------~vL~~isl~i~~Ge~~~liG~NGsGKST 62 (279)
T 2ihy_A 21 LIQLDQIGRMKQGK-------TILKKISWQIAKGDKWILYGLNGAGKTT 62 (279)
T ss_dssp EEEEEEEEEEETTE-------EEEEEEEEEEETTCEEEEECCTTSSHHH
T ss_pred eEEEEeEEEEECCE-------EEEEeeeEEEcCCCEEEEECCCCCcHHH
Confidence 35677777666421 1222222245568899999999999996
No 471
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=21.50 E-value=27 Score=34.87 Aligned_cols=60 Identities=10% Similarity=0.130 Sum_probs=33.5
Q ss_pred EEEcCeeeeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEE
Q 004358 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYC 73 (759)
Q Consensus 3 ~~i~~~~v~FPy~~~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~ 73 (759)
+.++++.+.|+- ++ ....|--.+..|+...|-+|.|+|||.- +-+++-.. .+..+ .|.|.
T Consensus 25 l~i~~l~~~y~~---~~----vL~~vsl~i~~Gei~~liG~NGsGKSTL--lk~l~Gl~-~p~~G-~I~~~ 84 (263)
T 2olj_A 25 IDVHQLKKSFGS---LE----VLKGINVHIREGEVVVVIGPSGSGKSTF--LRCLNLLE-DFDEG-EIIID 84 (263)
T ss_dssp EEEEEEEEEETT---EE----EEEEEEEEECTTCEEEEECCTTSSHHHH--HHHHTTSS-CCSEE-EEEET
T ss_pred EEEEeEEEEECC---EE----EEEeeEEEEcCCCEEEEEcCCCCcHHHH--HHHHHcCC-CCCCc-EEEEC
Confidence 566777666531 11 1222222345678999999999999963 33333221 23334 67664
No 472
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=21.36 E-value=62 Score=34.34 Aligned_cols=42 Identities=21% Similarity=0.301 Sum_probs=27.3
Q ss_pred eCCCCCCCHH--HHHHHHHHHHHH---HhCCcEEEEcCCCCcHHHHH
Q 004358 11 YFPYDNIYPE--QYSYMLELKRAL---DAKGHCLLEMPTGTGKTIAL 52 (759)
Q Consensus 11 ~FPy~~~r~~--Q~~~~~~v~~al---~~~~~~liEaPTGtGKTla~ 52 (759)
.+|.+..++. ..+.--.+.+.+ -+|+..+|-||.|+|||.-.
T Consensus 146 i~P~~R~~le~e~~~tGiraID~l~PigrGQR~lIfg~~g~GKT~Ll 192 (427)
T 3l0o_A 146 DYPRERFILETDPKIYSTRLIDLFAPIGKGQRGMIVAPPKAGKTTIL 192 (427)
T ss_dssp ECCCSBCCCCCSTTCHHHHHHHHHSCCBTTCEEEEEECTTCCHHHHH
T ss_pred CCchhhccccccchhccchhhhhcccccCCceEEEecCCCCChhHHH
Confidence 3565543333 223334556665 45789999999999999754
No 473
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=21.30 E-value=89 Score=29.51 Aligned_cols=32 Identities=19% Similarity=0.126 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEE
Q 004358 38 CLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYC 73 (759)
Q Consensus 38 ~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~ 73 (759)
++.-.-+|+|||...+.-+.++++. +. ||.+.
T Consensus 5 ~v~s~kgGvGKTt~a~nLa~~la~~---G~-rVll~ 36 (224)
T 1byi_A 5 FVTGTDTEVGKTVASCALLQAAKAA---GY-RTAGY 36 (224)
T ss_dssp EEEESSTTSCHHHHHHHHHHHHHHT---TC-CEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC---CC-CEEEE
Confidence 4555568999998766555554432 45 78764
No 474
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=21.03 E-value=23 Score=36.23 Aligned_cols=61 Identities=11% Similarity=0.088 Sum_probs=34.2
Q ss_pred EEEcCeeeeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHhCCCCCcEEEEE
Q 004358 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYC 73 (759)
Q Consensus 3 ~~i~~~~v~FPy~~~r~~Q~~~~~~v~~al~~~~~~liEaPTGtGKTla~L~~~l~~~~~~~~~~~kvi~~ 73 (759)
+.++++.+.||-.. + ....|--.+..|+.+.|-+|+|+|||-- +-+|.-. ..+..+ .|.+-
T Consensus 54 i~~~~vs~~y~~~~--~----vL~~isl~i~~Ge~vaivG~sGsGKSTL--l~ll~gl-~~p~~G-~I~i~ 114 (306)
T 3nh6_A 54 IEFENVHFSYADGR--E----TLQDVSFTVMPGQTLALVGPSGAGKSTI--LRLLFRF-YDISSG-CIRID 114 (306)
T ss_dssp EEEEEEEEESSTTC--E----EEEEEEEEECTTCEEEEESSSCHHHHHH--HHHHTTS-SCCSEE-EEEET
T ss_pred EEEEEEEEEcCCCC--c----eeeeeeEEEcCCCEEEEECCCCchHHHH--HHHHHcC-CCCCCc-EEEEC
Confidence 55667766665221 1 1222222345688999999999999963 2333211 223334 67664
No 475
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=20.90 E-value=26 Score=35.52 Aligned_cols=18 Identities=28% Similarity=0.195 Sum_probs=15.4
Q ss_pred hCCcEEEEcCCCCcHHHH
Q 004358 34 AKGHCLLEMPTGTGKTIA 51 (759)
Q Consensus 34 ~~~~~liEaPTGtGKTla 51 (759)
.|+...|-+|.|+|||.-
T Consensus 63 ~Ge~~~i~G~NGsGKSTL 80 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSL 80 (290)
T ss_dssp TTCEEEEEESTTSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 467889999999999973
No 476
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=20.55 E-value=29 Score=33.52 Aligned_cols=17 Identities=18% Similarity=0.143 Sum_probs=13.7
Q ss_pred hCCcEEEEcCCCCcHHH
Q 004358 34 AKGHCLLEMPTGTGKTI 50 (759)
Q Consensus 34 ~~~~~liEaPTGtGKTl 50 (759)
+.+.++|-+|+|+|||.
T Consensus 28 k~kiI~llGpPGsGKgT 44 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGT 44 (217)
T ss_dssp SCEEEEEECCTTCCHHH
T ss_pred CCcEEEEECCCCCCHHH
Confidence 34578889999999965
No 477
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=20.20 E-value=37 Score=34.13 Aligned_cols=15 Identities=27% Similarity=0.122 Sum_probs=13.1
Q ss_pred cEEEEcCCCCcHHHH
Q 004358 37 HCLLEMPTGTGKTIA 51 (759)
Q Consensus 37 ~~liEaPTGtGKTla 51 (759)
.+++.+|+|+|||..
T Consensus 4 ~I~l~G~~GsGKST~ 18 (301)
T 1ltq_A 4 IILTIGCPGSGKSTW 18 (301)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578999999999973
Done!