Query 004360
Match_columns 759
No_of_seqs 167 out of 218
Neff 7.1
Searched_HMMs 46136
Date Thu Mar 28 22:06:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004360.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004360hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2163 Centromere/kinetochore 100.0 1E-102 2E-107 847.7 24.6 693 1-755 2-719 (719)
2 PF06248 Zw10: Centromere/kine 100.0 1.3E-93 2.8E-98 835.6 32.4 564 21-593 2-592 (593)
3 PF11989 Dsl1_C: Retrograde tr 100.0 2.1E-35 4.6E-40 309.8 5.5 279 425-756 1-284 (291)
4 PF10475 DUF2450: Protein of u 98.4 1.6E-05 3.5E-10 85.7 20.2 201 26-253 28-228 (291)
5 KOG2163 Centromere/kinetochore 97.4 0.0015 3.3E-08 74.0 12.3 225 30-255 31-264 (719)
6 KOG2176 Exocyst complex, subun 96.8 0.47 1E-05 56.3 25.8 122 26-156 41-169 (800)
7 PF04100 Vps53_N: Vps53-like, 96.8 0.06 1.3E-06 60.4 18.2 190 29-237 21-213 (383)
8 KOG3691 Exocyst complex subuni 96.6 0.043 9.3E-07 65.1 15.1 163 29-196 46-208 (982)
9 KOG2307 Low density lipoprotei 96.5 0.19 4.2E-06 57.0 19.2 289 28-374 45-353 (705)
10 PF04124 Dor1: Dor1-like famil 96.5 0.077 1.7E-06 58.6 16.3 159 26-190 7-165 (338)
11 PF10392 COG5: Golgi transport 96.3 0.036 7.8E-07 52.7 10.3 114 11-130 15-128 (132)
12 KOG2180 Late Golgi protein sor 95.5 0.66 1.4E-05 54.4 18.0 201 29-251 36-239 (793)
13 KOG2115 Vacuolar sorting prote 94.9 0.57 1.2E-05 56.3 15.4 198 37-242 247-444 (951)
14 PF06148 COG2: COG (conserved 94.8 0.0084 1.8E-07 57.0 0.1 61 30-90 27-87 (133)
15 PF04048 Sec8_exocyst: Sec8 ex 94.5 0.21 4.5E-06 48.1 8.9 103 30-134 37-139 (142)
16 PF15469 Sec5: Exocyst complex 93.7 2.1 4.4E-05 42.9 14.7 142 48-197 3-150 (182)
17 PF10191 COG7: Golgi complex c 90.8 5.4 0.00012 49.0 16.1 129 31-161 36-164 (766)
18 PF08700 Vps51: Vps51/Vps67; 84.6 1.5 3.2E-05 38.2 4.5 60 29-88 22-81 (87)
19 KOG2069 Golgi transport comple 82.7 33 0.00072 40.0 15.1 160 29-194 34-193 (581)
20 PF04437 RINT1_TIP1: RINT-1 / 80.5 1.6 3.5E-05 50.8 4.0 333 337-712 80-450 (494)
21 COG1579 Zn-ribbon protein, pos 79.3 39 0.00084 35.4 13.2 40 173-212 161-200 (239)
22 PF04912 Dynamitin: Dynamitin 79.0 44 0.00096 37.7 14.8 131 27-161 88-259 (388)
23 PF06046 Sec6: Exocyst complex 78.9 3.2 7E-05 49.0 5.9 232 450-707 243-495 (566)
24 KOG0412 Golgi transport comple 78.2 1E+02 0.0022 37.1 17.2 127 590-736 636-764 (773)
25 KOG2211 Predicted Golgi transp 76.3 99 0.0021 36.9 16.3 126 26-161 68-203 (797)
26 KOG1961 Vacuolar sorting prote 76.1 29 0.00063 40.5 12.0 158 9-192 37-211 (683)
27 PF06160 EzrA: Septation ring 75.3 48 0.001 39.3 14.3 102 60-161 96-207 (560)
28 KOG2346 Uncharacterized conser 73.9 15 0.00033 41.8 8.9 149 39-193 59-207 (636)
29 KOG2911 Uncharacterized conser 73.2 21 0.00045 40.2 9.7 114 31-144 245-366 (439)
30 PF11988 Dsl1_N: Retrograde tr 69.9 12 0.00027 40.8 7.0 221 107-335 37-284 (354)
31 KOG1853 LIS1-interacting prote 67.9 41 0.00089 35.1 9.8 33 93-125 138-170 (333)
32 KOG0994 Extracellular matrix g 67.6 20 0.00043 44.7 8.5 140 9-161 1479-1632(1758)
33 PF09763 Sec3_C: Exocyst compl 67.4 1.1E+02 0.0024 37.4 15.3 125 30-160 2-136 (701)
34 KOG4182 Uncharacterized conser 64.2 1.3E+02 0.0027 34.6 13.3 107 53-161 58-168 (828)
35 PF04740 LXG: LXG domain of WX 63.9 1.1E+02 0.0023 30.9 12.3 61 30-90 28-89 (204)
36 KOG2347 Sec5 subunit of exocys 63.2 65 0.0014 39.4 11.6 159 25-190 183-346 (934)
37 PHA02562 46 endonuclease subun 62.8 1.3E+02 0.0029 35.3 14.6 51 60-112 222-272 (562)
38 PF08317 Spc7: Spc7 kinetochor 60.0 52 0.0011 36.2 9.7 19 124-142 253-271 (325)
39 COG4477 EzrA Negative regulato 58.8 66 0.0014 37.3 10.2 102 60-161 99-210 (570)
40 PRK02224 chromosome segregatio 58.7 1.2E+02 0.0025 38.1 13.7 41 120-160 625-665 (880)
41 KOG0412 Golgi transport comple 58.3 20 0.00043 42.7 6.2 114 113-247 116-238 (773)
42 PF07426 Dynactin_p22: Dynacti 57.6 1.1E+02 0.0023 30.7 10.5 30 170-199 142-171 (174)
43 PF10498 IFT57: Intra-flagella 56.0 1.3E+02 0.0028 33.7 11.9 122 57-186 215-346 (359)
44 PRK04778 septation ring format 54.6 1.7E+02 0.0037 34.8 13.6 66 96-161 141-211 (569)
45 TIGR03185 DNA_S_dndD DNA sulfu 53.7 1.2E+02 0.0026 36.7 12.2 94 65-158 391-493 (650)
46 PF06419 COG6: Conserved oligo 51.3 2.1E+02 0.0045 34.5 13.6 101 58-160 38-144 (618)
47 PF06160 EzrA: Septation ring 49.9 69 0.0015 38.0 9.2 91 94-184 221-315 (560)
48 PF03357 Snf7: Snf7; InterPro 49.2 61 0.0013 31.5 7.4 28 30-57 12-39 (171)
49 PF10805 DUF2730: Protein of u 48.9 1E+02 0.0022 28.1 8.2 52 67-118 37-88 (106)
50 KOG1029 Endocytic adaptor prot 46.9 3.6E+02 0.0079 32.9 13.8 72 32-105 392-475 (1118)
51 KOG1854 Mitochondrial inner me 45.7 2.5E+02 0.0053 33.5 12.3 41 11-51 296-336 (657)
52 PF10186 Atg14: UV radiation r 44.3 1.7E+02 0.0038 31.0 10.6 25 30-54 24-48 (302)
53 PRK04778 septation ring format 43.8 5.2E+02 0.011 30.8 15.3 19 123-141 419-437 (569)
54 KOG0996 Structural maintenance 43.2 2E+02 0.0044 36.6 11.6 124 30-161 862-997 (1293)
55 PRK10884 SH3 domain-containing 41.2 93 0.002 31.9 7.4 25 29-53 89-113 (206)
56 PF05667 DUF812: Protein of un 40.8 1.9E+02 0.0041 34.7 10.8 42 145-192 391-432 (594)
57 PRK10869 recombination and rep 40.8 4.2E+02 0.0091 31.4 13.8 131 21-161 201-337 (553)
58 PF05791 Bacillus_HBL: Bacillu 40.7 2.5E+02 0.0055 28.1 10.4 135 31-186 46-181 (184)
59 PF07373 CAMP_factor: CAMP fac 39.3 4.7E+02 0.01 27.3 12.1 57 19-75 5-62 (228)
60 PF06705 SF-assemblin: SF-asse 38.6 4E+02 0.0086 27.9 12.0 9 166-174 224-232 (247)
61 PF06008 Laminin_I: Laminin Do 38.5 5E+02 0.011 27.4 14.3 108 30-137 49-168 (264)
62 PRK11637 AmiB activator; Provi 37.7 5.9E+02 0.013 29.0 14.1 23 29-51 43-65 (428)
63 PF05082 Rop-like: Rop-like; 37.6 80 0.0017 26.4 5.0 55 29-83 5-62 (66)
64 KOG2148 Exocyst protein Sec3 [ 37.6 2.8E+02 0.0061 33.2 11.0 78 120-197 275-367 (867)
65 PF14966 DNA_repr_REX1B: DNA r 37.5 1.6E+02 0.0034 26.5 7.3 76 43-118 12-93 (97)
66 COG1579 Zn-ribbon protein, pos 37.2 2.8E+02 0.0061 29.2 10.2 31 60-90 47-77 (239)
67 PF04048 Sec8_exocyst: Sec8 ex 37.1 2.7E+02 0.0059 26.6 9.5 100 28-133 42-141 (142)
68 PF10498 IFT57: Intra-flagella 36.8 1.7E+02 0.0037 32.7 9.1 45 97-141 275-320 (359)
69 PRK01156 chromosome segregatio 36.5 2.2E+02 0.0048 35.7 11.3 35 127-161 714-749 (895)
70 COG1392 Phosphate transport re 36.4 2E+02 0.0043 29.8 9.0 58 28-85 44-107 (217)
71 smart00787 Spc7 Spc7 kinetocho 35.7 1.3E+02 0.0028 33.0 7.9 62 80-143 205-267 (312)
72 PF04124 Dor1: Dor1-like famil 35.4 3.3E+02 0.0072 30.0 11.2 102 29-132 17-118 (338)
73 PF08112 ATP-synt_E_2: ATP syn 35.2 46 0.001 26.2 3.0 37 27-63 5-41 (56)
74 KOG3647 Predicted coiled-coil 35.2 2.5E+02 0.0055 29.8 9.3 110 13-125 31-163 (338)
75 PF07889 DUF1664: Protein of u 35.1 1.1E+02 0.0025 28.8 6.3 39 49-87 44-83 (126)
76 TIGR00606 rad50 rad50. This fa 34.7 5E+02 0.011 34.3 14.4 122 72-197 1028-1155(1311)
77 PF04100 Vps53_N: Vps53-like, 34.4 6.6E+02 0.014 28.3 13.5 44 320-370 280-323 (383)
78 cd07664 BAR_SNX2 The Bin/Amphi 34.3 5.6E+02 0.012 26.8 14.6 28 30-57 26-53 (234)
79 PF07798 DUF1640: Protein of u 34.0 1.3E+02 0.0029 29.9 7.1 24 27-50 45-68 (177)
80 KOG0972 Huntingtin interacting 33.9 1.9E+02 0.0041 31.1 8.2 125 32-158 247-371 (384)
81 PF12240 Angiomotin_C: Angiomo 33.1 2.9E+02 0.0063 28.2 9.1 91 26-123 57-164 (205)
82 COG4477 EzrA Negative regulato 32.5 2.2E+02 0.0049 33.2 9.2 28 30-58 313-340 (570)
83 TIGR03185 DNA_S_dndD DNA sulfu 32.5 2.2E+02 0.0047 34.5 9.9 11 196-206 528-538 (650)
84 PRK03918 chromosome segregatio 32.1 4.3E+02 0.0093 33.0 12.8 7 188-194 749-755 (880)
85 PF09787 Golgin_A5: Golgin sub 31.9 6.3E+02 0.014 29.6 13.3 73 30-104 113-185 (511)
86 PF12128 DUF3584: Protein of u 31.7 6.5E+02 0.014 33.0 14.5 125 21-151 218-352 (1201)
87 COG0497 RecN ATPase involved i 31.6 6.8E+02 0.015 29.7 13.1 93 61-161 244-338 (557)
88 TIGR00634 recN DNA repair prot 31.3 4.9E+02 0.011 30.8 12.5 128 25-161 208-342 (563)
89 TIGR00996 Mtu_fam_mce virulenc 31.3 5E+02 0.011 27.6 11.6 13 28-40 129-141 (291)
90 PF07464 ApoLp-III: Apolipopho 30.9 3E+02 0.0065 27.0 8.7 80 30-114 31-118 (155)
91 PRK03918 chromosome segregatio 30.0 3.8E+02 0.0081 33.5 11.8 11 173-183 745-755 (880)
92 PTZ00464 SNF-7-like protein; P 29.7 3.4E+02 0.0073 28.0 9.3 26 29-55 14-39 (211)
93 KOG0243 Kinesin-like protein [ 29.4 8.4E+02 0.018 31.1 13.9 103 33-138 404-520 (1041)
94 PF04129 Vps52: Vps52 / Sac2 f 29.2 5.9E+02 0.013 29.8 12.5 126 64-196 13-153 (508)
95 PRK04863 mukB cell division pr 28.7 9.4E+02 0.02 32.3 15.1 19 600-618 1105-1123(1486)
96 PF07544 Med9: RNA polymerase 28.1 1.7E+02 0.0036 25.5 5.8 58 65-122 21-79 (83)
97 TIGR00606 rad50 rad50. This fa 27.5 7.7E+02 0.017 32.6 14.3 25 27-51 823-847 (1311)
98 PRK13658 hypothetical protein; 27.4 1.1E+02 0.0024 24.4 3.9 33 125-157 7-39 (59)
99 PF14276 DUF4363: Domain of un 26.3 3.6E+02 0.0079 24.7 8.2 87 71-161 22-111 (121)
100 COG3883 Uncharacterized protei 26.3 6.2E+02 0.013 27.1 10.6 19 138-156 124-142 (265)
101 KOG4674 Uncharacterized conser 26.1 3.1E+02 0.0066 37.0 9.8 83 29-113 801-883 (1822)
102 KOG3060 Uncharacterized conser 25.1 4.5E+02 0.0097 28.1 9.1 71 75-154 100-181 (289)
103 KOG0250 DNA repair protein RAD 24.9 1E+03 0.022 30.5 13.4 14 144-157 397-410 (1074)
104 PF11902 DUF3422: Protein of u 24.7 6.5E+02 0.014 28.8 11.3 159 64-254 208-385 (420)
105 KOG2211 Predicted Golgi transp 24.7 3.5E+02 0.0076 32.5 9.1 16 381-396 462-477 (797)
106 PF08317 Spc7: Spc7 kinetochor 24.7 9.4E+02 0.02 26.3 14.4 6 173-178 281-286 (325)
107 PF00038 Filament: Intermediat 24.7 7.4E+02 0.016 26.6 11.6 62 28-89 164-226 (312)
108 PF06133 DUF964: Protein of un 24.6 5E+02 0.011 23.1 10.1 97 79-189 4-102 (108)
109 cd07666 BAR_SNX7 The Bin/Amphi 24.5 8.5E+02 0.018 25.7 14.2 115 23-142 51-176 (243)
110 PRK09039 hypothetical protein; 24.1 5.4E+02 0.012 28.5 10.4 10 300-309 293-302 (343)
111 PF12805 FUSC-like: FUSC-like 24.1 8.9E+02 0.019 25.8 12.7 68 21-88 124-202 (284)
112 COG4913 Uncharacterized protei 23.9 6E+02 0.013 31.1 10.7 19 19-37 587-605 (1104)
113 PF12777 MT: Microtubule-bindi 23.6 3.2E+02 0.0069 30.3 8.5 97 62-161 5-102 (344)
114 PF04156 IncA: IncA protein; 23.6 5E+02 0.011 25.8 9.3 18 30-47 85-102 (191)
115 PF04849 HAP1_N: HAP1 N-termin 23.3 9.2E+02 0.02 26.4 11.4 24 29-52 163-186 (306)
116 PF04136 Sec34: Sec34-like fam 23.3 7E+02 0.015 24.3 11.2 124 65-196 14-146 (157)
117 KOG0996 Structural maintenance 22.9 1.6E+03 0.034 29.2 14.5 133 27-160 779-926 (1293)
118 PF06008 Laminin_I: Laminin Do 22.5 9.2E+02 0.02 25.4 12.8 37 52-88 32-68 (264)
119 KOG2273 Membrane coat complex 22.4 6.2E+02 0.013 29.5 11.0 119 30-157 278-396 (503)
120 PF12126 DUF3583: Protein of u 22.3 5.6E+02 0.012 27.7 9.3 19 93-111 40-58 (324)
121 KOG0994 Extracellular matrix g 22.3 3.8E+02 0.0083 34.3 9.0 71 64-136 1224-1295(1758)
122 KOG3758 Uncharacterized conser 21.5 1.5E+03 0.031 27.3 14.6 133 59-201 72-209 (655)
123 PF04111 APG6: Autophagy prote 21.5 3.1E+02 0.0066 30.1 7.7 52 31-87 7-58 (314)
124 KOG0250 DNA repair protein RAD 21.4 1.6E+03 0.035 28.8 14.3 69 93-161 392-463 (1074)
125 PF14164 YqzH: YqzH-like prote 21.3 77 0.0017 26.3 2.2 35 20-54 20-55 (64)
126 COG3524 KpsE Capsule polysacch 21.2 1.8E+02 0.0039 31.6 5.5 97 57-155 209-316 (372)
127 PF10191 COG7: Golgi complex c 21.1 8.9E+02 0.019 30.0 12.4 42 625-666 680-721 (766)
128 PRK11281 hypothetical protein; 21.0 4.8E+02 0.01 33.8 10.2 17 25-41 35-51 (1113)
129 PF07888 CALCOCO1: Calcium bin 21.0 1.3E+03 0.029 27.3 12.9 10 382-391 442-451 (546)
130 PHA02562 46 endonuclease subun 20.9 5.1E+02 0.011 30.4 10.1 17 31-47 260-276 (562)
131 PRK02224 chromosome segregatio 20.9 1.3E+03 0.028 28.8 14.2 21 30-50 472-492 (880)
132 PF07989 Microtub_assoc: Micro 20.9 1.8E+02 0.0038 24.9 4.4 28 30-58 4-31 (75)
133 KOG3197 Predicted hydrolases o 20.8 3.5E+02 0.0075 27.3 7.0 100 629-743 85-200 (210)
134 PF10168 Nup88: Nuclear pore c 20.8 2.7E+02 0.0058 34.2 7.7 27 112-138 636-662 (717)
135 COG3096 MukB Uncharacterized p 20.5 1.3E+03 0.028 28.4 12.5 101 52-161 325-434 (1480)
136 PF04728 LPP: Lipoprotein leuc 20.2 1.5E+02 0.0033 23.9 3.6 16 73-88 4-19 (56)
137 PRK08655 prephenate dehydrogen 20.1 1E+03 0.023 27.2 12.0 86 96-184 208-299 (437)
138 TIGR01010 BexC_CtrB_KpsE polys 20.1 3.2E+02 0.0069 30.3 7.7 81 30-113 174-260 (362)
No 1
>KOG2163 consensus Centromere/kinetochore protein zw10 involved in mitotic chromosome segregation [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.1e-102 Score=847.74 Aligned_cols=693 Identities=24% Similarity=0.326 Sum_probs=588.5
Q ss_pred CcccccccchhhccccCCCCCCCCCCCcchHHHHHHhhhccchhhhH-hHHHHHHhhhhchHHHHhhhhhhhhhhhhhhh
Q 004360 1 MEELFDTINVRDLLSTHDLTDQTAPLTAPDLRLLISRLEFHSLQIKS-KVQSYIASHHQDFASLFSLCNDTVSRTDEIST 79 (759)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dl~~~i~~l~~~~~e~k~-~v~~~i~~~y~~f~~~~~~~~~l~~~~~~l~~ 79 (759)
+++||.+.|++..|-++|+.+|.+| +..|+.++++ +|++.|.+.|++|.|.+.+.....+++.+|..
T Consensus 2 ~~~l~Es~n~~g~lekedl~~~it~------------ls~rv~r~~gnrv~shi~~~yskflp~~~s~~~di~E~~sL~r 69 (719)
T KOG2163|consen 2 IDALAESENSYGDLEKEDLKNGITS------------LSQRVVRKYGNRVVSHIVNAYSKFLPDRLSNLEDIAEMSSLTR 69 (719)
T ss_pred chHHHHHhccccchhhhhhcCCccc------------cchHHHHHHHHHHHHHHHHHHhhhccccccchhhHHHHHHHhh
Confidence 4688888888887766555555555 5566677777 89999999999999999999999999999999
Q ss_pred cHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCchhhhHHHHHHHHhHhhc
Q 004360 80 DLSDILGLISYRPIDKEVKEIIDEVSAKMKEARVKKELLELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRV 159 (759)
Q Consensus 80 ~l~~l~~~i~~~~~~~~l~~~~~~~~~l~~el~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~~~~~Aa~~L~~l~~~l~~ 159 (759)
++++++++|++ ++...++.+.++....+++++ ..+-.+++.+++..+-...+.....+.+.+++..|+++.+.+..
T Consensus 70 di~~l~~~i~s-dv~d~L~e~~~~~~d~e~qle---v~l~~l~~~qev~~~~E~~ncve~~kai~~~lq~l~ea~kll~~ 145 (719)
T KOG2163|consen 70 DISNLIDQIAS-DVPDMLAEIKSQAQDCENQLE---VQLMKLVEEQEVIMRSETTNCVEWGKAILACLQFLNEANKLLEG 145 (719)
T ss_pred hHHHHHHHhhh-hhHHHHHHhhcchhhhhhHHH---HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999998 788888888889999889888 33335778888888888899888899999999999999999988
Q ss_pred cCCCCCCchhHHHhHHHHHHHHHHHHHHHHHHHHhhccccccCC-------eEEEEEEEeecCc---ccchHHHHHH---
Q 004360 160 GDENASEPLVYGLLRKEWLVCFEEIQELLVKFVESAVRFEKESN-------RVLVKYQLTVDGL---DGIELRTVLE--- 226 (759)
Q Consensus 160 ~~~~~~~~~I~~~L~~~~~~l~~~i~~~L~~~~~~~v~~~~~~~-------~i~v~~~~~~~~~---~~~~L~~vl~--- 226 (759)
.+...-+..+.+.+..++.-++.+...++...|.....|..-.. ...+..++-..++ ...+++....
T Consensus 146 ~grd~fd~~~lk~l~~vlrI~k~ne~yel~a~~~~~~~w~~~~s~qe~ldr~~q~~~~~f~~ss~ve~q~~l~~t~sa~i 225 (719)
T KOG2163|consen 146 IGRDGFDMSVLKHLAAVLRILKYNERYELSADYERAMNWPKLSSIQECLDRTNQVSFSVFNVSSRVEDQKMLNETLSAMI 225 (719)
T ss_pred cCcccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcccCccHHHHHHHHHHhheeeeeccchhhhhhcCChHHHHHH
Confidence 88666788889999999999999999999999999888832111 0112222211111 1234444444
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhhcccccccCCccchhhhcCCCchhhHHHHHhhccCCCccccccCcceeehhHHHHHHH
Q 004360 227 AMEVVGILDYGLAKVADLKIKYVISPAVSYGSPITFVEELNPGPEKMSEAILRMVPSVDDKIENVDGKTIYSGIIQVVKF 306 (759)
Q Consensus 227 AL~~lg~l~~~l~~l~~~L~~~il~Pli~~~~~~~~v~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~v~~~l~~vl~F 306 (759)
|+..+++..+..+ +..|+++++.|+.+.|...+.+++ ++ +....++...-.. .+..+.|.++..|++-
T Consensus 226 a~s~l~E~~~~~k--~~~Lldyclapvasrp~~hvyie~---~p---~~~~~Rf~~~~~~----~s~a~~f~~v~~VlEs 293 (719)
T KOG2163|consen 226 AISQLPERLDAWK--IVILLDYCLAPVASRPGVHVYIED---NP---TPDQTRFLINQKP----RSKADKFIDVAKVLES 293 (719)
T ss_pred HHHHhHHHhhhHH--HHHHHHHhHHHhccCccceeeecc---CC---Ccceeeeeecccc----CchHhhhhHHHHHHHH
Confidence 4445555444444 678999999999999987554453 11 1134444332111 2666788888888888
Q ss_pred hhhhhcc---------cCCceeeecccccchhhhHHHHHhhhhccCCCccccccchHHHHhcchhHHHHHHHhhccccCC
Q 004360 307 IHKRICL---------QNGSWVRCFGRLTWPRISELIISNFLSKVVPEDASKLADFQKIIDHTSEFEAALKEMMFISASD 377 (759)
Q Consensus 307 L~~~L~~---------~n~~l~~~~g~~i~~~ls~~lI~~~L~~aIP~~~~~l~~f~~vi~~~~~Fe~~L~~lgf~~~~~ 377 (759)
+.-.|+. ....+.+++|++||.+|+++|+++||.++||.+.+++.+|+.+|+.+.+||..|+++.|++..+
T Consensus 294 l~l~Lh~l~~~e~evt~~~~~~emigDhi~e~l~~~l~k~cl~~avP~~stkl~d~e~iie~t~qfE~aLkem~f~~~~d 373 (719)
T KOG2163|consen 294 LELKLHVLHSHELEVTTGKTFTEMIGDHIEEQLITMLLKDCLAIAVPVTSTKLEDQEMIIELTQQFEVALKEMKFLGFFD 373 (719)
T ss_pred hhhcccccccchhhhcccchHHHHHhHHHHHHHHHHHHHhhcccccCCcchhhHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 7755441 2467889999999999999999999999999999999999999999999999999997776555
Q ss_pred chhhhhhhccccceeeeccchhhHHHHHhhchhhccccccccccCCCCCcccCCCccccCcccchhhhhccchhhHHHHH
Q 004360 378 NKDARLSNFAENVEVHFASRKKTEILAKARNLLLQCDFAVPQESTGKDPICKNDGMAVDSSEHVVDLLFMSERCVVTKAA 457 (759)
Q Consensus 378 ~~~~~L~~~v~~i~~~~~~krr~~~L~~aR~ll~~~d~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~c~IS~~~ 457 (759)
. .+.|.+|++++++||++|||.++|++||+||.++-.+.+.+.+ ....+++...+|.+|+|+||+++
T Consensus 374 q-~~allkfaed~ethfanRkc~~il~kARnLi~~~~~~~v~vip------------ntha~hvanl~FsfprC~vSeSa 440 (719)
T KOG2163|consen 374 Q-KSALLKFAEDTETHFANRKCFAILSKARNLINETYDKLVTVIP------------NTHAEHVANLYFSFPRCTVSESA 440 (719)
T ss_pred h-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhceecc------------cccHHHHhhhhccCcceeecHHH
Confidence 3 4699999999999999999999999999999975444454332 12344556678999999999999
Q ss_pred HHHHHHHHHHHhhhhhcc-hhhHHHHhhhhhhhhhhhhhcccchhhhhccCcceeeeeecCcchhhhhhhhhceeeeccC
Q 004360 458 SQLMKLVHQILQDICLSS-TRVAFEFYHAARDAILLYEAIVPVKLERQLEGINQVAVLMHNDCLYLSQEILGFAFEYHSD 536 (759)
Q Consensus 458 ~~l~~Li~~~L~ea~~ss-~~~a~~L~~~~~~i~~Ly~a~~P~~~~~~l~~~p~~a~l~yNDc~YLa~~L~~l~~~~~~~ 536 (759)
.++|+|++++|.+++.++ +++|.+||+++|+|+.||.++||++|++.|+|+||+|++|||||||++|+..+.++
T Consensus 441 ~~fvnL~~~tL~~at~ss~dq~a~~la~~arni~hly~~vVP~khrell~siPq~AaifhNNCmyi~h~~~~h~f----- 515 (719)
T KOG2163|consen 441 INFVNLLRDTLKAATASSDDQAAAKLALTARNIVHLYVIVVPRKHRELLSSIPQMAAIFHNNCMYISHCIMTHSF----- 515 (719)
T ss_pred HHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcchHHHHHhcccHHHHHHHHhhhc-----
Confidence 999999999999999887 89999999999999999999999999999999999999999999999998777655
Q ss_pred CCcccchhhhhccccchhhchHHHHHhHhHHhhhhhhhhhhccCccccchhhhhhccccccceeeeeeeeeeeeeccccc
Q 004360 537 FPSSIKEHAVFADMAPRFHLMAEEILQRQIQIVIFNLREALDGADGFQNTHQIQQFESAKFSIEQVVFILEKVHIIWEPL 616 (759)
Q Consensus 537 l~~~~~~~~~f~d~~~~~r~~~~~~~~~qi~~~~~~l~~~L~~a~gf~~~~~~~~~~~~~~av~q~~~~L~~L~~~W~~v 616 (759)
.+..+|+|++|+||.+|++||++|+.+|+++|+++|++++||.++++...+++|+++|+||++||+.|+++|++|
T Consensus 516 -----~g~~~ladlaprlr~~a~ecf~kQv~~q~seL~e~l~sa~~Fen~~~ee~~ssa~klVrQcL~qLkll~~vw~~v 590 (719)
T KOG2163|consen 516 -----LGEPLLADLAPRLRTVAAECFEKQVTRQRSELTEYLESASIFENLPAEEMSSSADKLVRQCLLQLKLLAKVWREV 590 (719)
T ss_pred -----ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCcHHhhcccHHHHHHHHHHHHHHHHHHHhcc
Confidence 256789999999999999999999999999999999999999999998999999999999999999999999999
Q ss_pred cCccccchhhHHHHHHHHHHhhhhhhcccccchHhHHhHHHHHHHHHHhHHHHHHHHHHhhcCCCCCCCCCCCchhhhhh
Q 004360 617 LLPSTYNRSMCTVLESVFSRITRDILLLDDMAAEETLQLQRLIHLMLENLSSLLESLAAVNQKGKTEGDFARPLDDLIPS 696 (759)
Q Consensus 617 Lp~~vy~~~ig~Ll~~~~~~ii~~Il~l~DIs~~es~~L~~l~~~~~~~l~~lF~~~~~~~~~~~~~~~~~~~~~~~v~~ 696 (759)
||+.+||++||+|+|+++.++|.+|+.++|||++++.+|+.||+.+++.++++|.++.+ .+.+..+|++
T Consensus 591 Lpe~vYck~mc~Llnt~~~elir~V~tl~Disa~da~eL~dLik~vL~~~p~vfa~~~e-----------~~et~v~v~~ 659 (719)
T KOG2163|consen 591 LPEVVYCKVMCSLLNTLLDELIRHVVTLSDISANDANELADLIKRVLEVVPNVFAYKEE-----------TKETDVCVRE 659 (719)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhHHHHHHHHHHHHhhhhhhcChhh-----------ccCccccHHH
Confidence 99999999999999999999999999999999999999999999999999999987642 1355789999
Q ss_pred HHHHHHHHHHhcCcchhhhhhhccCc-eeecccchHHHHHHHHHHhcCCchhhhhhhccc
Q 004360 697 LCKFRKLAELLDMPLRSITAAWESGE-LLSCGFTLSEIEDFIKAIFADSTLRKECLWRIE 755 (759)
Q Consensus 697 W~K~~~L~~iL~~sL~dI~~~w~~G~-ll~~~fs~~Ev~~LIrAlF~ds~~R~~~l~~I~ 755 (759)
|++|+++.++|++||.||+.||.+|+ |+++.||.+||++|||||||||++|+++|++|+
T Consensus 660 w~pl~el~~mL~asLmeIt~rW~dgkGplaa~fsrsEVk~lIkALFqDs~wRadaia~i~ 719 (719)
T KOG2163|consen 660 WFPLNELVFMLGASLMEITHRWFDGKGPLAAHFSRSEVKGLIKALFQDSQWRADAIARIQ 719 (719)
T ss_pred hccHHHHHHHhCchHhHHHHHHhcCCccHHhhccHHHHHHHHHHHhhchHHHHHHHhhcC
Confidence 99999999999999999999999999 999999999999999999999999999999985
No 2
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=100.00 E-value=1.3e-93 Score=835.57 Aligned_cols=564 Identities=34% Similarity=0.539 Sum_probs=500.9
Q ss_pred CCCCCCCcchHHHHHHhhhccchhhhHhHHHHHHhhhhchHHHHhhhhhhhhhhhhhhhcHHHHHhh-hcCCCcchHHHH
Q 004360 21 DQTAPLTAPDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGL-ISYRPIDKEVKE 99 (759)
Q Consensus 21 ~~~~~l~~~dl~~~i~~l~~~~~e~k~~v~~~i~~~y~~f~~~~~~~~~l~~~~~~l~~~l~~l~~~-i~~~~~~~~l~~ 99 (759)
+|++||++|||+++|++|.++++++|++|+++|.++|.+|++.++++.+++.+++++.++|+++... +++ ++..++.+
T Consensus 2 ~~~~~l~~edl~~~I~~L~~~i~~~k~eV~~~I~~~y~df~~~~~~~~~L~~~~~~l~~eI~d~l~~~~~~-~i~~~l~~ 80 (593)
T PF06248_consen 2 ASSGPLSKEDLRKSISRLSRRIEELKEEVHSMINKKYSDFSPSLQSAKDLIERSKSLAREINDLLQSEIEN-EIQPQLRD 80 (593)
T ss_pred CCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccc-hhHHHHHH
Confidence 5899999999999999999999999999999999999999999999999999999999999555444 766 89999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCchhhhHHHHHHHHhHhhccC-CCCCCchhHHHhHHHHH
Q 004360 100 IIDEVSAKMKEARVKKELLELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVGD-ENASEPLVYGLLRKEWL 178 (759)
Q Consensus 100 ~~~~~~~l~~el~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~~~~~Aa~~L~~l~~~l~~~~-~~~~~~~I~~~L~~~~~ 178 (759)
+++++..+++|+++++++++++++|+++++.|++++.++++|+|..|++.|++++..|+.++ ....++.||+.|+.+|.
T Consensus 81 a~~e~~~L~~eL~~~~~~l~~L~~L~~i~~~l~~~~~al~~~~~~~Aa~~L~~~~~~L~~l~~~~~~~~~i~~~Lk~e~~ 160 (593)
T PF06248_consen 81 AAEELQELKRELEENEQLLEVLEQLQEIDELLEEVEEALKEGNYLDAADLLEELKSLLDDLKSSKFEELKILKLLKDEYS 160 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCcCcccccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999974 44568999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccccCC--------eEEEEEEEeecCcccchHHHHHHHHHHHHhhhhhhhhhhhhhhhhhc
Q 004360 179 VCFEEIQELLVKFVESAVRFEKESN--------RVLVKYQLTVDGLDGIELRTVLEAMEVVGILDYGLAKVADLKIKYVI 250 (759)
Q Consensus 179 ~l~~~i~~~L~~~~~~~v~~~~~~~--------~i~v~~~~~~~~~~~~~L~~vl~AL~~lg~l~~~l~~l~~~L~~~il 250 (759)
.+++.++++|.+.|+++|+|++.++ .+.++++++.++. ...|+++|+||+++|++++++++|++.|++|||
T Consensus 161 ~lr~~L~~~L~~~w~~lv~~~~~~~k~~~~~~~~~~v~l~vs~~~~-~~~L~~vl~AL~~lg~L~~~l~~~~~~Ll~~ii 239 (593)
T PF06248_consen 161 ELRENLQYQLSEEWERLVQWDSPSSKQLSSPESTLKVTLHVSKSES-QESLQDVLQALEILGILDYKLKKFSKFLLEHII 239 (593)
T ss_pred HHHHHHHHHHHHHHHhheeecCCCcccccccccceEEEEEeecCcc-cchHHHHHHHHHHhCchhHHHHHHHHHHHHHHH
Confidence 9999999999999999999987665 4567777766643 345999999999999999999999999999999
Q ss_pred ccccccCCccchhhhcCCCchhhHHHHHhhccCCCccccccCcceeehhHHHHHHHhhhhhcccC---Cceeeecccccc
Q 004360 251 SPAVSYGSPITFVEELNPGPEKMSEAILRMVPSVDDKIENVDGKTIYSGIIQVVKFIHKRICLQN---GSWVRCFGRLTW 327 (759)
Q Consensus 251 ~Pli~~~~~~~~v~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~v~~~l~~vl~FL~~~L~~~n---~~l~~~~g~~i~ 327 (759)
.|+|.+|+..+.++... ++ ....+|++.+. ..+.+.++++++|++|..||+||+++|++.+ .+++..||+.||
T Consensus 240 ~PlI~~p~~~~~~~~~~-~~--~~~~~l~~~~~-~~~~~~~~~~~V~~~l~~vf~fL~~~L~~~~~~~~~l~~~~g~~i~ 315 (593)
T PF06248_consen 240 KPLISHPSSIVSVEESE-DG--SVEITLSYEPD-SSKDKRPSPKEVFSNLLLVFEFLHQHLLSLPSSDSSLSESFGDHIW 315 (593)
T ss_pred HHHhcCCCCcccccccC-CC--cceEEEEeecc-cccccCCCHHHHHHHHHHHHHHHHHHhcccCCchhHHHHHHHHHHH
Confidence 99999998765444321 11 01234666554 3334568899999999999999999996533 247899999999
Q ss_pred hhhhHHHHHhhhhccCCCccccccchHHHHhcchhHHHHHHHhhccccCCchhhhhhhccccceeeeccchhhHHHHHhh
Q 004360 328 PRISELIISNFLSKVVPEDASKLADFQKIIDHTSEFEAALKEMMFISASDNKDARLSNFAENVEVHFASRKKTEILAKAR 407 (759)
Q Consensus 328 ~~ls~~lI~~~L~~aIP~~~~~l~~f~~vi~~~~~Fe~~L~~lgf~~~~~~~~~~L~~~v~~i~~~~~~krr~~~L~~aR 407 (759)
|+++++||++||.|+||++.++|++|+.+++.+.+||++|+++||++++. ++|.+|++|+++||++|||+++|++||
T Consensus 316 ~~ls~~lI~~~L~~aiP~~~~~l~~f~~v~~~~~~Fe~~L~~lgf~~~~~---~~L~~~~~~i~~~f~~kr~~~iL~~AR 392 (593)
T PF06248_consen 316 PRLSELLISNCLSPAIPTSASELQEFEEVLESVEEFEEALKELGFLSSDN---TELSEFVDNIETHFANKRCQDILDKAR 392 (593)
T ss_pred HHHHHHHHHhhCcCcCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCc---hHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998764 799999999999999999999999999
Q ss_pred chhhccccccccccCCC---------CCccc-----CCCccccCcccchhhhhccchhhHHHHHHHHHHHHHHHHhhhhh
Q 004360 408 NLLLQCDFAVPQESTGK---------DPICK-----NDGMAVDSSEHVVDLLFMSERCVVTKAASQLMKLVHQILQDICL 473 (759)
Q Consensus 408 ~ll~~~d~~~~~~~~~~---------~~w~~-----~~g~~~~~~~~~~~~~~~~~~c~IS~~~~~l~~Li~~~L~ea~~ 473 (759)
++|.++.++.+.++++. .+++. .+....++++...+.+|.+|+|+||+++++||+|++++|.||+.
T Consensus 393 ~lm~~~~~~~v~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~c~IS~s~~~l~~L~~~~L~ea~~ 472 (593)
T PF06248_consen 393 DLMLRDLHDTVKVGPDSKAELPKLPSPGSSNKAKAKEESMSNENEDSLSPSLFQFPRCRISKSAQELVELAHQTLKEACK 472 (593)
T ss_pred HHHhcccccceEecccccccCCCCCCCcccchhhcccchhcccCccccccccccCCcceechhHHHHHHHHHHHHHHHhc
Confidence 99998777766543221 11100 01111233445567899999999999999999999999999999
Q ss_pred cchhhHHHHhhhhhhhhhhhhhcccchhhhhccCcceeeeeecCcchhhhhhhhhceeeeccCCCcccchhhhhccccch
Q 004360 474 SSTRVAFEFYHAARDAILLYEAIVPVKLERQLEGINQVAVLMHNDCLYLSQEILGFAFEYHSDFPSSIKEHAVFADMAPR 553 (759)
Q Consensus 474 ss~~~a~~L~~~~~~i~~Ly~a~~P~~~~~~l~~~p~~a~l~yNDc~YLa~~L~~l~~~~~~~l~~~~~~~~~f~d~~~~ 553 (759)
+++.+|.+||+++|+|++||+++||++|++.|+++||+||+||||||||||||++++++|+.++|++++...+|+|++|+
T Consensus 473 ~~~~~a~~l~~~~r~i~~ly~~~vP~~h~~~l~~ip~~aalf~NdC~ylah~l~~l~~~~~~~~~~~~~~~~~f~d~v~~ 552 (593)
T PF06248_consen 473 SSERCAAQLFQTARDIFELYRAVVPVYHKKLLESIPQQAALFHNDCMYLAHHLLTLGHEYRSKLPSPLKEIATFVDLVPR 552 (593)
T ss_pred CChhhHHHHHHHHHHHHHHHHHHccHHHHhhcccccHHHHhHhcchHHHHHHHHHhHHHHhhcCcchhhhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888899999999
Q ss_pred hhchHHHHHhHhHHhhhhhhhhhhccCccccchhhhhhcc
Q 004360 554 FHLMAEEILQRQIQIVIFNLREALDGADGFQNTHQIQQFE 593 (759)
Q Consensus 554 ~r~~~~~~~~~qi~~~~~~l~~~L~~a~gf~~~~~~~~~~ 593 (759)
||.+|+.+|.+|+++|+++|.++|++|+||.++++..+|.
T Consensus 553 lr~~g~~~~~~q~~~q~~~l~~~l~~a~~F~~~~~~~~~~ 592 (593)
T PF06248_consen 553 LRRLGEECFSAQMQRQRSQLLEILDGASGFSNTDDEQNYS 592 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccCChhhccC
Confidence 9999999999999999999999999999999998876653
No 3
>PF11989 Dsl1_C: Retrograde transport protein Dsl1 C terminal; InterPro: IPR021876 Dsl1 is a peripheral membrane protein required for transport between the Golgi and the endoplasmic reticulum []. It is localised to the ER membrane, and in vitro it specifically binds to coatomer, the major component of the protein coat of COPI vesicles []. Binding sites for coatomer are found on a disorganised region between the C and N termini of Dsl1 []. The C-terminal domain is involved in binding to the Sec39 subunit of the Dsl1p complex []. The N-terminal complexes with another subunit of the Dsl1p complex called Tip20 which forms heterodimers by pairing the N termini of each protein []. ; PDB: 3K8P_C.
Probab=100.00 E-value=2.1e-35 Score=309.81 Aligned_cols=279 Identities=23% Similarity=0.329 Sum_probs=176.7
Q ss_pred CCcccCCCccccCcccchhhhhccchhhHHHHHHHHHHHHHHHHhhhhh-cchhhHHHHh-hhhhhhhhhhhhcccchhh
Q 004360 425 DPICKNDGMAVDSSEHVVDLLFMSERCVVTKAASQLMKLVHQILQDICL-SSTRVAFEFY-HAARDAILLYEAIVPVKLE 502 (759)
Q Consensus 425 ~~w~~~~g~~~~~~~~~~~~~~~~~~c~IS~~~~~l~~Li~~~L~ea~~-ss~~~a~~L~-~~~~~i~~Ly~a~~P~~~~ 502 (759)
|+| +++||+|-++.........+++.||+.|+.+..++.+...++.. +...+..+-+ +....+..+|.|+++.+|.
T Consensus 1 d~W--dd~WD~dvd~~~~~~~~~~~~i~vT~iP~~~~~i~~~f~~~~~~i~~~~~~~~~~~yk~nlLqt~~~A~~~~~y~ 78 (291)
T PF11989_consen 1 DGW--DDEWDDDVDEEEEETKSKTEKIKVTQIPDKFIKIINEFQKDSEDISQNKIDSQYFSYKANLLQTLFLAMSSVKYP 78 (291)
T ss_dssp --------------------------EEEETHHHHHHHHHHHHHHHHHTTTTTSSHHHHH-HHHHHHHHHHHHHHHHH--
T ss_pred CCC--cccccccccccccccccccceeEeehhhHHHHHHHHHHHHHHHhhccccccHHHHHHHhHHHHHHHHHHhhhhcc
Confidence 355 33565543332222223388999999999999999999998853 2222222211 1222233567888888773
Q ss_pred hhccCcceeeeeecCcchhhhhhhhhceeeeccCCCcccchhhhhccccchhhchHHHHHhHhHHhhhhhhhhhhccC-c
Q 004360 503 RQLEGINQVAVLMHNDCLYLSQEILGFAFEYHSDFPSSIKEHAVFADMAPRFHLMAEEILQRQIQIVIFNLREALDGA-D 581 (759)
Q Consensus 503 ~~l~~~p~~a~l~yNDc~YLa~~L~~l~~~~~~~l~~~~~~~~~f~d~~~~~r~~~~~~~~~qi~~~~~~l~~~L~~a-~ 581 (759)
+. .+++|||-.||+.+ . ..+.. |..+....+...++.++..+.++|++. +
T Consensus 79 ----~~---~~~LynD~~yl~~~------~---------~~L~r-------~~el~~~~~~~~~~~~~k~v~~ll~~~~~ 129 (291)
T PF11989_consen 79 ----NN---WFQLYNDLKYLIQE------N---------PKLSR-------LQELNWNQLEQELQSELKIVTDLLDGQLQ 129 (291)
T ss_dssp ----S----HHHHHHHHHHHHHH----------------TT-HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----cc---HHHHHHHHHHHHhc------c---------hhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 22 39999999999987 1 02322 334444555566666677788888774 5
Q ss_pred cccchhhhhhccccccceeeeeeeeee-eeeccccccCccccchhhHHHHHHHHH-HhhhhhhcccccchHhHHhHHHHH
Q 004360 582 GFQNTHQIQQFESAKFSIEQVVFILEK-VHIIWEPLLLPSTYNRSMCTVLESVFS-RITRDILLLDDMAAEETLQLQRLI 659 (759)
Q Consensus 582 gf~~~~~~~~~~~~~~av~q~~~~L~~-L~~~W~~vLp~~vy~~~ig~Ll~~~~~-~ii~~Il~l~DIs~~es~~L~~l~ 659 (759)
+|. ++++..+|..++++.+..++. +...|++ +..+.|.+.+|.|++++++ +|+++|++++||||.+|++|+.||
T Consensus 130 ~~~---~~e~~~~~~~~~~~l~~~i~~~~~~~~~~-~~~~~~~~~i~~li~fv~n~~ii~~I~~~~dISE~qS~~Ls~li 205 (291)
T PF11989_consen 130 NFS---DNERNPSWDITIDQLLPYIQKEILEPLQQ-INHSEFKQFIGSLINFVYNDWIINSILSLDDISEKQSENLSELI 205 (291)
T ss_dssp HHH---HTSSS---HHHHHTHHHHHHHTHHHHHHT-T-----HHHHHHHHHHHHHTTHHHHHHTSS---HHHHHHHHHHH
T ss_pred hhh---hccCChHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 554 345556777778888877776 4445555 4789999999999999986 799999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHhhcCCCCCCCCCCCchhhhhhHHHHHHHHHHhcCcchhhhhhhccCceeecccchHHHHHHHHH
Q 004360 660 HLMLENLSSLLESLAAVNQKGKTEGDFARPLDDLIPSLCKFRKLAELLDMPLRSITAAWESGELLSCGFTLSEIEDFIKA 739 (759)
Q Consensus 660 ~~~~~~l~~lF~~~~~~~~~~~~~~~~~~~~~~~v~~W~K~~~L~~iL~~sL~dI~~~w~~G~ll~~~fs~~Ev~~LIrA 739 (759)
+.+.... .+ +. - ...+.|+++|.||++++++|++|||||++||++|+++ +|+++||++||||
T Consensus 206 ~~l~~~t-~i--~~-----l--------~~~~~y~~s~~Kf~~v~~lL~~hLkDIm~~Fy~Gel~--~fsTdElI~lIks 267 (291)
T PF11989_consen 206 DLLNNNT-EI--PS-----L--------NITPKYVESWNKFNNVGFLLNNHLKDIMEMFYQGELY--DFSTDELIQLIKS 267 (291)
T ss_dssp HHHHHHT-----GG-----G--------TT-HHHHHHHHHHHHHHHHHT--HHHHHHHHHTTGGG--GS-HHHHHHHHHH
T ss_pred HHHcccc-ch--hh-----c--------cccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh--cccHHHHHHHHHH
Confidence 9864322 11 11 1 1347899999999999999999999999999999987 7999999999999
Q ss_pred HhcCCchhhhhhhcccc
Q 004360 740 IFADSTLRKECLWRIEN 756 (759)
Q Consensus 740 lF~ds~~R~~~l~~I~~ 756 (759)
||+|||+|+++|.+|++
T Consensus 268 lFadS~lR~n~I~eI~e 284 (291)
T PF11989_consen 268 LFADSPLRDNYIDEIRE 284 (291)
T ss_dssp HS---HHHHHHHHHHHH
T ss_pred HhcCChHHHHHHHHHHH
Confidence 99999999999999986
No 4
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=98.44 E-value=1.6e-05 Score=85.69 Aligned_cols=201 Identities=17% Similarity=0.109 Sum_probs=163.2
Q ss_pred CCcchHHHHHHhhhccchhhhHhHHHHHHhhhhchHHHHhhhhhhhhhhhhhhhcHHHHHhhhcCCCcchHHHHHHHHHH
Q 004360 26 LTAPDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVS 105 (759)
Q Consensus 26 l~~~dl~~~i~~l~~~~~e~k~~v~~~i~~~y~~f~~~~~~~~~l~~~~~~l~~~l~~l~~~i~~~~~~~~l~~~~~~~~ 105 (759)
++-+++....++|+....-+..++..-|.++|..|...+....++..++......+..+...|.. ++..+....=++.
T Consensus 28 ~~~~~i~~~~ekLs~~ldvVe~~L~~~I~~~s~~f~~a~~~v~el~~~l~~a~~~~~~~R~~L~~--~~~~~~~~~L~Il 105 (291)
T PF10475_consen 28 LDLEDIEELQEKLSHYLDVVEKKLSREISEKSDSFFQAMSSVQELQDELEEALVICKNLRRNLKS--ADENLTKSGLEIL 105 (291)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhHHHHHHHH
Confidence 56678999999999999999999999999999999999999999999988888888888887744 3444444444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCchhhhHHHHHHHHhHhhccCCCCCCchhHHHhHHHHHHHHHHHH
Q 004360 106 AKMKEARVKKELLELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVGDENASEPLVYGLLRKEWLVCFEEIQ 185 (759)
Q Consensus 106 ~l~~el~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~~~~~Aa~~L~~l~~~l~~~~~~~~~~~I~~~L~~~~~~l~~~i~ 185 (759)
.+.+.-+.-..++..|+.|+.+.+.-..++..+.+|+|..|++.+.+.+..++.. .....++.|..++.+....+.
T Consensus 106 ~~~rkr~~l~~ll~~L~~i~~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~~l----~~~~c~~~L~~~L~e~~~~i~ 181 (291)
T PF10475_consen 106 RLQRKRQNLKKLLEKLEQIKTVQQTQSRLQELLEEGDYPGALDLIEECQQLLEEL----KGYSCVRHLSSQLQETLELIE 181 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc----ccchHHHHHhHHHHHHHHHHH
Confidence 6666667777889999999999999999999999999999999999999999765 466788889999999999999
Q ss_pred HHHHHHHHhhccccccCCeEEEEEEEeecCcccchHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccc
Q 004360 186 ELLVKFVESAVRFEKESNRVLVKYQLTVDGLDGIELRTVLEAMEVVGILDYGLAKVADLKIKYVISPA 253 (759)
Q Consensus 186 ~~L~~~~~~~v~~~~~~~~i~v~~~~~~~~~~~~~L~~vl~AL~~lg~l~~~l~~l~~~L~~~il~Pl 253 (759)
+.|...+.+...-. ++.....+..|-..+|.... +.+.+..+++.++
T Consensus 182 ~~ld~~l~~~~~~F-----------------d~~~Y~~v~~AY~lLgk~~~----~~dkl~~~f~~~i 228 (291)
T PF10475_consen 182 EQLDSDLSKVCQDF-----------------DPDKYSKVQEAYQLLGKTQS----AMDKLQMHFTSAI 228 (291)
T ss_pred HHHHHHHHHHHHhC-----------------CHHHHHHHHHHHHHHhhhHH----HHHHHHHHHHHHH
Confidence 99999988754310 13456778888888774444 4556655666665
No 5
>KOG2163 consensus Centromere/kinetochore protein zw10 involved in mitotic chromosome segregation [Cell cycle control, cell division, chromosome partitioning]
Probab=97.37 E-value=0.0015 Score=74.05 Aligned_cols=225 Identities=24% Similarity=0.145 Sum_probs=166.2
Q ss_pred hHHHHHHhhhccchhhhHhHHHHHHhhhhchHHHHhhhhhhhhhhhhhhhcHHHHHhhhcCCCcchHHHHHHHHH-HHHH
Q 004360 30 DLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEV-SAKM 108 (759)
Q Consensus 30 dl~~~i~~l~~~~~e~k~~v~~~i~~~y~~f~~~~~~~~~l~~~~~~l~~~l~~l~~~i~~~~~~~~l~~~~~~~-~~l~ 108 (759)
+.+.+..|+.+++...++++....-++..+|..+...+.|+++..+.+.++.-+.+.-+.+.+.+-+.+-.+... .+-.
T Consensus 31 v~r~~gnrv~shi~~~yskflp~~~s~~~di~E~~sL~rdi~~l~~~i~sdv~d~L~e~~~~~~d~e~qlev~l~~l~~~ 110 (719)
T KOG2163|consen 31 VVRKYGNRVVSHIVNAYSKFLPDRLSNLEDIAEMSSLTRDISNLIDQIASDVPDMLAEIKSQAQDCENQLEVQLMKLVEE 110 (719)
T ss_pred HHHHHHHHHHHHHHHHHhhhccccccchhhHHHHHHHhhhHHHHHHHhhhhhHHHHHHhhcchhhhhhHHHHHHHhhhhH
Confidence 788899999999999999999999999999999999999999999988888777777766544443333333333 3334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhc----CchhhhHHHHHHHHhHhhccCC-CCCCchhHHHhHHHHHHHHHH
Q 004360 109 KEARVKKELLELVRAIVEIGERLKGVKEALRD----GRLRFAAEELRELKKDLRVGDE-NASEPLVYGLLRKEWLVCFEE 183 (759)
Q Consensus 109 ~el~~~~~~~~~l~~l~~~~~~L~~~~~~l~~----~~~~~Aa~~L~~l~~~l~~~~~-~~~~~~I~~~L~~~~~~l~~~ 183 (759)
+|+....+....++..+.+...+...+++..- |+..-++..++.+...++..+. ..-++..+......|..+.+
T Consensus 111 qev~~~~E~~ncve~~kai~~~lq~l~ea~kll~~~grd~fd~~~lk~l~~vlrI~k~ne~yel~a~~~~~~~w~~~~s- 189 (719)
T KOG2163|consen 111 QEVIMRSETTNCVEWGKAILACLQFLNEANKLLEGIGRDGFDMSVLKHLAAVLRILKYNERYELSADYERAMNWPKLSS- 189 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcccCcc-
Confidence 56666666666777777777666666666544 7777777777776666655542 23466667778888998988
Q ss_pred HHHHHHHHHHhhccccccCCeEEEEEEEeecCcccchHHHHHHHHHHHH---hhhhhhhhhhhhhhhhhcccccc
Q 004360 184 IQELLVKFVESAVRFEKESNRVLVKYQLTVDGLDGIELRTVLEAMEVVG---ILDYGLAKVADLKIKYVISPAVS 255 (759)
Q Consensus 184 i~~~L~~~~~~~v~~~~~~~~i~v~~~~~~~~~~~~~L~~vl~AL~~lg---~l~~~l~~l~~~L~~~il~Pli~ 255 (759)
+++.+.+.....+++.+.+..+..........+....++.+...++..+ ++++.+..++..-..|++.|-..
T Consensus 190 ~qe~ldr~~q~~~~~f~~ss~ve~q~~l~~t~sa~ia~s~l~E~~~~~k~~~Lldyclapvasrp~~hvyie~~p 264 (719)
T KOG2163|consen 190 IQECLDRTNQVSFSVFNVSSRVEDQKMLNETLSAMIAISQLPERLDAWKIVILLDYCLAPVASRPGVHVYIEDNP 264 (719)
T ss_pred HHHHHHHHHHhheeeeeccchhhhhhcCChHHHHHHHHHHhHHHhhhHHHHHHHHHhHHHhccCccceeeeccCC
Confidence 9999999998888888877766655544333333456677888888888 89999999998877777766433
No 6
>KOG2176 consensus Exocyst complex, subunit SEC15 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.81 E-value=0.47 Score=56.31 Aligned_cols=122 Identities=16% Similarity=0.175 Sum_probs=85.9
Q ss_pred CCcchHHHHHHhhhccchhhhHhHHHHHHhhhhchHHHHhhhhhhhhhhhhhhhcHHHHHhhhcCCCcchHHHHHHHHHH
Q 004360 26 LTAPDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVS 105 (759)
Q Consensus 26 l~~~dl~~~i~~l~~~~~e~k~~v~~~i~~~y~~f~~~~~~~~~l~~~~~~l~~~l~~l~~~i~~~~~~~~l~~~~~~~~ 105 (759)
++.......+++|+.+++.=-.||-.+=+.||.+|+.+.+..... +++++.|++.+.+ .+.+++++..++-
T Consensus 41 ~d~~~~~~~~e~Le~~ir~~d~EIE~lcn~hyQdFidsIdEL~~V-------r~daq~Lks~vsd--~N~rLQ~~g~eLi 111 (800)
T KOG2176|consen 41 YDGNQHKPVMEKLENRIRNHDKEIEKLCNFHYQDFIDSIDELLKV-------RGDAQKLKSQVSD--TNRRLQESGKELI 111 (800)
T ss_pred HccCCcchHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHH-------HHHHHHHHHHHhh--hhhHHHHHHHHHH
Confidence 444466778999999999988899999999999999886555444 4455555555544 3455666666665
Q ss_pred HHHHHHHH-------HHHHHHHHHHHHHHHHhhHHHHHHhhcCchhhhHHHHHHHHhH
Q 004360 106 AKMKEARV-------KKELLELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKD 156 (759)
Q Consensus 106 ~l~~el~~-------~~~~~~~l~~l~~~~~~L~~~~~~l~~~~~~~Aa~~L~~l~~~ 156 (759)
-.+.++-. -.....++..-..+-+.....++.+.+|+|-.|+++++.+++.
T Consensus 112 v~~e~lv~~r~~~rnit~ai~~l~~Cl~vLEl~sK~~e~~s~kqyy~aLktle~lE~~ 169 (800)
T KOG2176|consen 112 VKKEDLVRCRTQSRNITEAIELLTLCLPVLELYSKLQEQMSEKQYYPALKTLESLEKV 169 (800)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 44444433 2333445555555556667788889999999999999988775
No 7
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=96.81 E-value=0.06 Score=60.39 Aligned_cols=190 Identities=14% Similarity=0.118 Sum_probs=121.2
Q ss_pred chHHHHHHhhhccchhhhHhHHHHHHhhhhchHHHHhhhhhhhhhhhhhhhcHHHHHhhhcCCCcchHHHHHHHHH---H
Q 004360 29 PDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEV---S 105 (759)
Q Consensus 29 ~dl~~~i~~l~~~~~e~k~~v~~~i~~~y~~f~~~~~~~~~l~~~~~~l~~~l~~l~~~i~~~~~~~~l~~~~~~~---~ 105 (759)
.+|...+.++..++.++..+|.+.+...-..=...-+...++...+.+|-.++..++.+=+. -+..|+.....+ .
T Consensus 21 ~~ld~~i~~l~~~i~~ld~eI~~~v~~q~~~~~~~~~~l~~a~~~i~~L~~~i~~ik~kA~~--sE~~V~~it~dIk~LD 98 (383)
T PF04100_consen 21 SNLDELIAKLRKEIRELDEEIKELVREQSSSGQDAEEDLEEAQEAIQELFEKISEIKSKAEE--SEQMVQEITRDIKQLD 98 (383)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 37899999999999999999998887754222222222233334444444444444444211 111222222222 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCchhhhHHHHHHHHhHhhccCCCCCCchhHHHhHHHHHHHHHHHH
Q 004360 106 AKMKEARVKKELLELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVGDENASEPLVYGLLRKEWLVCFEEIQ 185 (759)
Q Consensus 106 ~l~~el~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~~~~~Aa~~L~~l~~~l~~~~~~~~~~~I~~~L~~~~~~l~~~i~ 185 (759)
-.|+- -+....+|+.++-+...+++.+..++.++|.+++..|..+...+...... ++..-+..|..++..++..+.
T Consensus 99 ~AKrN---LT~SIT~LkrL~MLv~a~~qL~~~~~~r~Y~e~a~~L~av~~L~~~F~~y-ksi~~I~~L~~~i~~l~~~L~ 174 (383)
T PF04100_consen 99 NAKRN---LTQSITTLKRLQMLVTAVEQLKELAKKRQYKEIASLLQAVKELLEHFKPY-KSIPQIAELSKRIDQLQNELK 174 (383)
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHcc-cCcHHHHHHHHHHHHHHHHHH
Confidence 21222 23344577888888888888999999999999999999999999888755 455555559999999999999
Q ss_pred HHHHHHHHhhccccccCCeEEEEEEEeecCcccchHHHHHHHHHHHHhhhhh
Q 004360 186 ELLVKFVESAVRFEKESNRVLVKYQLTVDGLDGIELRTVLEAMEVVGILDYG 237 (759)
Q Consensus 186 ~~L~~~~~~~v~~~~~~~~i~v~~~~~~~~~~~~~L~~vl~AL~~lg~l~~~ 237 (759)
+++..-|+.++. ..+.- .++.....+-.|..+++.|+..
T Consensus 175 ~qI~~df~~~f~---~~~~~----------~~~~~~~~l~~aC~vvd~L~~~ 213 (383)
T PF04100_consen 175 EQIFEDFEELFG---SQGDE----------SPGQSSQQLSDACLVVDALGPD 213 (383)
T ss_pred HHHHHHHHHHhc---cCCcc----------cccchHhHHHHHHHHHHHcCch
Confidence 999999987641 11110 0122345566677777766554
No 8
>KOG3691 consensus Exocyst complex subunit Sec8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.57 E-value=0.043 Score=65.07 Aligned_cols=163 Identities=15% Similarity=0.141 Sum_probs=130.0
Q ss_pred chHHHHHHhhhccchhhhHhHHHHHHhhhhchHHHHhhhhhhhhhhhhhhhcHHHHHhhhcCCCcchHHHHHHHHHHHHH
Q 004360 29 PDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKM 108 (759)
Q Consensus 29 ~dl~~~i~~l~~~~~e~k~~v~~~i~~~y~~f~~~~~~~~~l~~~~~~l~~~l~~l~~~i~~~~~~~~l~~~~~~~~~l~ 108 (759)
++....+++|+..-++--+.+.+-+..||.+|-....+=++..+.+..-+..+.+++..++. .+.-+.---++++++-
T Consensus 46 e~re~ek~~Led~Yk~~~a~Lq~lv~~H~q~~t~~i~sy~~i~s~It~~rerI~~vK~~L~~--~k~ll~~~rdeLqklw 123 (982)
T KOG3691|consen 46 EPRETEKERLEDSYKEFGAALQELVHTHKQDFTTGISSYGEISSGITNCRERIHNVKNNLEA--CKELLNTRRDELQKLW 123 (982)
T ss_pred cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhcCHHHHHHHH
Confidence 35677888888888888999999999999999888888888887777777788888877755 4445555555666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCchhhhHHHHHHHHhHhhccCCCCCCchhHHHhHHHHHHHHHHHHHHH
Q 004360 109 KEARVKKELLELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVGDENASEPLVYGLLRKEWLVCFEEIQELL 188 (759)
Q Consensus 109 ~el~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~~~~~Aa~~L~~l~~~l~~~~~~~~~~~I~~~L~~~~~~l~~~i~~~L 188 (759)
-+=..-+-++++|.+|.++.+.-+.+++.+...+|..|...|.+++..|... ...-.++..|+.+...+...+...|
T Consensus 124 ~~~~q~K~Vi~vL~eieEl~qvPqkie~~i~keqY~~Asdll~~~~~~lng~---L~~VEgLs~l~~ele~~~~~L~~~L 200 (982)
T KOG3691|consen 124 AENSQYKKVIEVLKEIEELRQVPQKIETLIAKEQYLQASDLLTRAWELLNGP---LDGVEGLSDLRSELEGLLSHLEDIL 200 (982)
T ss_pred HhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc---chhhhhhhHHHHHHHHHHHHHHHHH
Confidence 6666677788999999999999999999999999999999999999988765 3566788888888888777776666
Q ss_pred HHHHHhhc
Q 004360 189 VKFVESAV 196 (759)
Q Consensus 189 ~~~~~~~v 196 (759)
.+..-+.+
T Consensus 201 ~eELv~il 208 (982)
T KOG3691|consen 201 IEELVSIL 208 (982)
T ss_pred HHHHHHHH
Confidence 55544433
No 9
>KOG2307 consensus Low density lipoprotein receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.52 E-value=0.19 Score=57.00 Aligned_cols=289 Identities=15% Similarity=0.113 Sum_probs=143.5
Q ss_pred cchHHHHHHhhhccchhhhHhHHHHHHhhhhchHHHHhhhhhhhhhhhhhhhcHHHHHhhhcCCCcchHHHHHHHHHHHH
Q 004360 28 APDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAK 107 (759)
Q Consensus 28 ~~dl~~~i~~l~~~~~e~k~~v~~~i~~~y~~f~~~~~~~~~l~~~~~~l~~~l~~l~~~i~~~~~~~~l~~~~~~~~~l 107 (759)
+.+|.++=+.|.-...-++...-+-|+..|+||..+.--.=++-..+..++..|.++-..|.+ +.+-|..++..+..-
T Consensus 45 ~v~letLrddLrlylksl~~aMieLIN~DYADFVnLStnLVgld~aln~i~qpL~qlreei~s--~rgsV~ea~~alr~q 122 (705)
T KOG2307|consen 45 KVDLETLRDDLRLYLKSLQNAMIELINDDYADFVNLSTNLVGLDDALNKIEQPLNQLREEIKS--TRGSVGEAERALRQQ 122 (705)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhccHHHHHHHHHhHHHHHHHHHHH--HHhhHHHHHHHHHHH
Confidence 345666666666667777888889999999999988666555556666666666666666544 333444444433333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhh----------cCchhhhHHHHHHHHhHhhccCCCCCCchhHHHhHHHH
Q 004360 108 MKEARVKKELLELVRAIVEIGERLKGVKEALR----------DGRLRFAAEELRELKKDLRVGDENASEPLVYGLLRKEW 177 (759)
Q Consensus 108 ~~el~~~~~~~~~l~~l~~~~~~L~~~~~~l~----------~~~~~~Aa~~L~~l~~~l~~~~~~~~~~~I~~~L~~~~ 177 (759)
..|...+.+....+..+..+-..+.+....+. .-.+..+|-.+.+++--..... .. .+....++.
T Consensus 123 ~se~~~~Re~k~~lldl~~v~~~ieKL~k~L~s~psk~q~~~a~sLERiAlelnqlkf~a~h~k----~~-l~p~~e~ri 197 (705)
T KOG2307|consen 123 CSELCSNREKKIELLDLIYVLVAIEKLSKMLLSPPSKEQQDGATSLERIALELNQLKFHASHLK----GS-LFPHSEERI 197 (705)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccchHHHHHHHHHHHHHHHHHhh----cc-cCcchhhHH
Confidence 33333333333333333333333333333321 1123334444444433332222 11 222234555
Q ss_pred HHHHHHHHHHHHHHHHhhccccccCCeEEEEEEEeecCcccchHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccccccC
Q 004360 178 LVCFEEIQELLVKFVESAVRFEKESNRVLVKYQLTVDGLDGIELRTVLEAMEVVGILDYGLAKVADLKIKYVISPAVSYG 257 (759)
Q Consensus 178 ~~l~~~i~~~L~~~~~~~v~~~~~~~~i~v~~~~~~~~~~~~~L~~vl~AL~~lg~l~~~l~~l~~~L~~~il~Pli~~~ 257 (759)
......+++.|...+...++-+ ...++..+.+-..++.-+..=.-|. ..|+.|.|..-
T Consensus 198 a~~~~~L~qsl~~lf~eglqsa------------------~~~l~nclriYatld~t~~ae~lfr----~~vvapyi~ev 255 (705)
T KOG2307|consen 198 AAEKIILSQSLAVLFAEGLQSA------------------AGDLQNCLRIYATLDLTESAESLFR----LLVVAPYIAEV 255 (705)
T ss_pred hhHHHHHHHHHHHHHHHHhhcc------------------HHHHHHHHHHHHHHhhchhHHHHHH----HHHHHHHHHHH
Confidence 5555566666666665543211 1233333333333333333211111 12445543221
Q ss_pred CccchhhhcCCCchhhHHHHHhhccCCCccccccCcceeehhHHHHHHHhhhhhcc----------cCCceeeecccccc
Q 004360 258 SPITFVEELNPGPEKMSEAILRMVPSVDDKIENVDGKTIYSGIIQVVKFIHKRICL----------QNGSWVRCFGRLTW 327 (759)
Q Consensus 258 ~~~~~v~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~v~~~l~~vl~FL~~~L~~----------~n~~l~~~~g~~i~ 327 (759)
.. ++ . .+ .++..+......+++|+..|-+. .+-+....+-..+|
T Consensus 256 I~----eq---------------~---~e----~sp~gl~~~ykqilefv~~h~c~llre~tssdk~g~~~fdFlvnS~l 309 (705)
T KOG2307|consen 256 IN----EQ---------------H---DE----TSPSGLLKLYKQILEFVKKHRCTLLREMTSSDKRGLPGFDFLVNSLL 309 (705)
T ss_pred Hh----hh---------------h---cc----CCchhHHHHHHHHHHHHHHHHHHHHHHhchhhcCCCchHHHHHHHHH
Confidence 10 00 0 00 23444555566777777755331 11234455667778
Q ss_pred hhhhHHHHHhhhhccCCCccccccchHHHHhcchhHHHHHHHhhccc
Q 004360 328 PRISELIISNFLSKVVPEDASKLADFQKIIDHTSEFEAALKEMMFIS 374 (759)
Q Consensus 328 ~~ls~~lI~~~L~~aIP~~~~~l~~f~~vi~~~~~Fe~~L~~lgf~~ 374 (759)
+.+...|=...=+-.+|.+. ..|-+--..+.+|...+++....+
T Consensus 310 ~~ilt~iek~mps~f~Pgnp---~~F~ekyk~t~DFl~~le~~~tC~ 353 (705)
T KOG2307|consen 310 TFILTFIEKCMPSVFVPGNP---RLFHEKYKLTQDFLDNLESSHTCR 353 (705)
T ss_pred HHHHHHHHHhcccccCCCCc---HHHHHHHHHHHHHHHhccccCcCc
Confidence 87776655554444566665 345555556777777777654443
No 10
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=96.50 E-value=0.077 Score=58.56 Aligned_cols=159 Identities=14% Similarity=0.128 Sum_probs=115.7
Q ss_pred CCcchHHHHHHhhhccchhhhHhHHHHHHhhhhchHHHHhhhhhhhhhhhhhhhcHHHHHhhhcCCCcchHHHHHHHHHH
Q 004360 26 LTAPDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVS 105 (759)
Q Consensus 26 l~~~dl~~~i~~l~~~~~e~k~~v~~~i~~~y~~f~~~~~~~~~l~~~~~~l~~~l~~l~~~i~~~~~~~~l~~~~~~~~ 105 (759)
++-+.|.+-..+|...+.++..++.+--.++|.-|........++...+..+.+.++++.+.|.. .+...........
T Consensus 7 ~~l~~L~~Ep~~L~~~~~~l~~ql~~La~~~y~~fi~~~~~~~~i~~~~~~~~~~l~~L~~~l~~--L~~~~~~f~~~~~ 84 (338)
T PF04124_consen 7 LSLESLFSEPQSLSEEIASLDAQLQSLAFRNYKTFIDNAECSSDIRQELSSLSDSLDSLLDSLPE--LDEACQRFSSKAQ 84 (338)
T ss_pred CCHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 45568888999999999999999999999999999999999999999999999999999888744 3334444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCchhhhHHHHHHHHhHhhccCCCCCCchhHHHhHHHHHHHHHHHH
Q 004360 106 AKMKEARVKKELLELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVGDENASEPLVYGLLRKEWLVCFEEIQ 185 (759)
Q Consensus 106 ~l~~el~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~~~~~Aa~~L~~l~~~l~~~~~~~~~~~I~~~L~~~~~~l~~~i~ 185 (759)
....+.+.+..++.-.+++.++-+.=.=.+.++.+|.|.+|.+....++..-...+ +..+++.+..++......+.
T Consensus 85 ~~~~~r~~~~~~l~~~~~l~diLElP~Lm~~ci~~g~y~eALel~~~~~~L~~~~~----~~~lv~~i~~ev~~~~~~ml 160 (338)
T PF04124_consen 85 KISEERKKASLLLENHDRLLDILELPQLMDTCIRNGNYSEALELSAHVRRLQSRFP----NIPLVKSIAQEVEAALQQML 160 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcccHhhHHHHHHHHHHHHHhcc----CchhHHHHHHHHHHHHHHHH
Confidence 44455445554444444444443333445688899999999999999888776665 35666667777666555555
Q ss_pred HHHHH
Q 004360 186 ELLVK 190 (759)
Q Consensus 186 ~~L~~ 190 (759)
.+|-+
T Consensus 161 ~~Li~ 165 (338)
T PF04124_consen 161 SQLIN 165 (338)
T ss_pred HHHHH
Confidence 44444
No 11
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=96.27 E-value=0.036 Score=52.69 Aligned_cols=114 Identities=16% Similarity=0.261 Sum_probs=93.2
Q ss_pred hhccccCCCCCCCCCCCcchHHHHHHhhhccchhhhHhHHHHHHhhhhchHHHHhhhhhhhhhhhhhhhcHHHHHhhhcC
Q 004360 11 RDLLSTHDLTDQTAPLTAPDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISY 90 (759)
Q Consensus 11 ~~~~~~~~~~~~~~~l~~~dl~~~i~~l~~~~~e~k~~v~~~i~~~y~~f~~~~~~~~~l~~~~~~l~~~l~~l~~~i~~ 90 (759)
.++|.++...+.+.. |+..-++||..-++++..++.+-+..+|.+....+....++..-+.+++..++.|...++-
T Consensus 15 n~ll~~~~~~~~~~l----d~~~~l~kL~~~i~eld~~i~~~v~~~~~~LL~q~~~~~~~~~~l~~v~~~v~~L~~s~~R 90 (132)
T PF10392_consen 15 NDLLKSTNNNSDSEL----DISTPLKKLNFDIQELDKRIRSQVTSNHEDLLSQASSIEELESVLQAVRSSVESLQSSYER 90 (132)
T ss_pred HHHHHhhcCCCCCcc----cHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455665555444433 9999999999999999999999999999999999999998888888888888888888755
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004360 91 RPIDKEVKEIIDEVSAKMKEARVKKELLELVRAIVEIGER 130 (759)
Q Consensus 91 ~~~~~~l~~~~~~~~~l~~el~~~~~~~~~l~~l~~~~~~ 130 (759)
++.+|.+.=.++......++..++...+|+.+..+-..
T Consensus 91 --L~~eV~~Py~~~~~~~~~L~rl~~t~~LLR~~~r~l~L 128 (132)
T PF10392_consen 91 --LRSEVIEPYEKIQKLTSQLERLHQTSDLLRSVSRFLQL 128 (132)
T ss_pred --HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677788788888888888888888888877765543
No 12
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.52 E-value=0.66 Score=54.41 Aligned_cols=201 Identities=12% Similarity=0.113 Sum_probs=144.0
Q ss_pred chHHHHHHhhhccchhhhHhHHHHHHhhhhchHHHHhhhhhhhhhhhhhhhcHHHHHhhhcCCCcchHHHHHHHHHHH--
Q 004360 29 PDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSA-- 106 (759)
Q Consensus 29 ~dl~~~i~~l~~~~~e~k~~v~~~i~~~y~~f~~~~~~~~~l~~~~~~l~~~l~~l~~~i~~~~~~~~l~~~~~~~~~-- 106 (759)
.+++..|.+++.++.++...+.+-++..-..=...-.-..|+...+.+|..++..++++=|+ .+..|++....++.
T Consensus 36 ~~id~li~ki~~eir~~d~~l~~~Vr~q~N~g~~~~e~l~da~~ai~eL~~~i~eiks~ae~--Te~~V~eiTrdIKqLD 113 (793)
T KOG2180|consen 36 TNIDSLIQKIQGEIRRVDKNLLAVVRTQENSGTRGKENLADAQAAIEELFQKIQEIKSVAES--TEAMVQEITRDIKQLD 113 (793)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHhhh
Confidence 38999999999999999999998887766666666667888899999999999999999766 23445554444432
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCchhhhHHHHHHHHhHhhccCCCCCCchhHHHhHHHHHHHHHHHH
Q 004360 107 -KMKEARVKKELLELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVGDENASEPLVYGLLRKEWLVCFEEIQ 185 (759)
Q Consensus 107 -l~~el~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~~~~~Aa~~L~~l~~~l~~~~~~~~~~~I~~~L~~~~~~l~~~i~ 185 (759)
.||-| +..+.+|+.+.-+-..+.+.+..+.+++|-+|+..|+.+-+.++..... ++..=+.-|.+.+..++..+.
T Consensus 114 ~AKkNL---TtSiT~L~~L~MLv~~vesL~~l~~kr~y~e~a~~lqai~~ll~~F~~Y-k~v~~I~~Ls~si~~~k~~l~ 189 (793)
T KOG2180|consen 114 FAKKNL---TTSITTLHRLHMLVTGVESLNALLSKRSYGEAASPLQAILQLLNHFIAY-KSVDEIANLSESIDKLKKSLL 189 (793)
T ss_pred HHHhhH---HHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHhHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHH
Confidence 22222 2233466666666677777788899999999999999888888776544 455555669999999999999
Q ss_pred HHHHHHHHhhccccccCCeEEEEEEEeecCcccchHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcc
Q 004360 186 ELLVKFVESAVRFEKESNRVLVKYQLTVDGLDGIELRTVLEAMEVVGILDYGLAKVADLKIKYVIS 251 (759)
Q Consensus 186 ~~L~~~~~~~v~~~~~~~~i~v~~~~~~~~~~~~~L~~vl~AL~~lg~l~~~l~~l~~~L~~~il~ 251 (759)
.|+-.-|+.+.. ++.. + + .+..++-+-.|+.+++.+++.+. ..+++.++.
T Consensus 190 ~qi~~df~~~F~----~~~~--~-----~--~~~~l~~l~daC~v~d~lepsvr---eelIkwf~~ 239 (793)
T KOG2180|consen 190 SQIFQDFKAAFS----GGET--H-----E--EALLLQKLSDACLVVDALEPSVR---EELIKWFCS 239 (793)
T ss_pred HHHHHHHHHhcC----CCCC--C-----C--CccHHHHHHHHHHHHHHhCCccH---HHHHHHHHH
Confidence 999999988754 2221 1 1 13455666667777777777543 244444443
No 13
>KOG2115 consensus Vacuolar sorting protein VPS45 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.91 E-value=0.57 Score=56.26 Aligned_cols=198 Identities=11% Similarity=0.123 Sum_probs=137.3
Q ss_pred hhhccchhhhHhHHHHHHhhhhchHHHHhhhhhhhhhhhhhhhcHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 004360 37 RLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMKEARVKKE 116 (759)
Q Consensus 37 ~l~~~~~e~k~~v~~~i~~~y~~f~~~~~~~~~l~~~~~~l~~~l~~l~~~i~~~~~~~~l~~~~~~~~~l~~el~~~~~ 116 (759)
||+.=..-+...+..-|.++-..|=..+..-.++..+...-..++..|...|.. ++....+-+.++.++..--.-...
T Consensus 247 kLs~yLDvVE~~La~eIs~~SdsFfha~~~~~~Lq~~~~d~~~~vk~Lre~i~~--vd~~~~~~s~~Ile~~~~r~n~~k 324 (951)
T KOG2115|consen 247 KLSHYLDVVELHLAQEISKRSDSFFHAMTSLHNLQKELRDTMSEVKELRENIKE--VDAENVRKSIKILELALTRKNVEK 324 (951)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhHHHHHHHHHHHHHHHH
Confidence 333334445566667778888888888888888877777777777777777644 565666666666655444455667
Q ss_pred HHHHHHHHHHHHHhhHHHHHHhhcCchhhhHHHHHHHHhHhhccCCCCCCchhHHHhHHHHHHHHHHHHHHHHHHHHhhc
Q 004360 117 LLELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVGDENASEPLVYGLLRKEWLVCFEEIQELLVKFVESAV 196 (759)
Q Consensus 117 ~~~~l~~l~~~~~~L~~~~~~l~~~~~~~Aa~~L~~l~~~l~~~~~~~~~~~I~~~L~~~~~~l~~~i~~~L~~~~~~~v 196 (759)
+.+.|+.+..+++....++..+..++|+.|++..+..+..|+... ....--++-|..+..++...|-..+...|.+..
T Consensus 325 L~~kL~~i~~V~~~q~~vq~ll~~~d~~~ALdlI~t~q~~L~g~e--L~gl~sfrhL~~ql~el~~tI~~m~t~eF~~~~ 402 (951)
T KOG2115|consen 325 LLQKLRLIATVHQAQSTVQLLLSTQDFVGALDLIKTIQELLKGSE--LLGLHSFRHLRSQLLELYKTIDKMLTREFSTYS 402 (951)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHhhhh--hcCchhHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778889999999999999999999999999999999999988532 245556788999999999999999999998877
Q ss_pred cccccCCeEEEEEEEeecCcccchHHHHHHHHHHHHhhhhhhhhhh
Q 004360 197 RFEKESNRVLVKYQLTVDGLDGIELRTVLEAMEVVGILDYGLAKVA 242 (759)
Q Consensus 197 ~~~~~~~~i~v~~~~~~~~~~~~~L~~vl~AL~~lg~l~~~l~~l~ 242 (759)
+-|- +...+.-++.... ...|..++.+|-+..-+...+.-..
T Consensus 403 ~~Dl-g~~~~~~ls~~le---e~~L~~~vlgllr~~klpsf~~~~~ 444 (951)
T KOG2115|consen 403 KSDL-GRKLTLQLSILLE---EDRLSSLVLGLLRTRKLPSFLEGYR 444 (951)
T ss_pred HHHh-CCCchHHHHHHHH---HhHHHHHHHhhhhhhhhHHHHHHHH
Confidence 6543 1222111111111 2456666666666555544333333
No 14
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=94.77 E-value=0.0084 Score=57.01 Aligned_cols=61 Identities=21% Similarity=0.192 Sum_probs=9.6
Q ss_pred hHHHHHHhhhccchhhhHhHHHHHHhhhhchHHHHhhhhhhhhhhhhhhhcHHHHHhhhcC
Q 004360 30 DLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISY 90 (759)
Q Consensus 30 dl~~~i~~l~~~~~e~k~~v~~~i~~~y~~f~~~~~~~~~l~~~~~~l~~~l~~l~~~i~~ 90 (759)
.|....+.|......++.++.+.|++.|.+|.++-....+....+..++..+..+...|++
T Consensus 27 ~Le~L~~dL~~~~~~L~~~Li~lIN~dY~dFv~Ls~~L~g~~~~i~~l~~~L~~~~~~v~~ 87 (133)
T PF06148_consen 27 SLEDLRKDLRSYSKELKNELIELINDDYADFVSLSTNLVGMDEKIEELRKPLSQFREEVES 87 (133)
T ss_dssp -----------------------------------------------HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888889999999999999999999999998887777777777777777777766644
No 15
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=94.48 E-value=0.21 Score=48.13 Aligned_cols=103 Identities=15% Similarity=0.161 Sum_probs=77.8
Q ss_pred hHHHHHHhhhccchhhhHhHHHHHHhhhhchHHHHhhhhhhhhhhhhhhhcHHHHHhhhcCCCcchHHHHHHHHHHHHHH
Q 004360 30 DLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMK 109 (759)
Q Consensus 30 dl~~~i~~l~~~~~e~k~~v~~~i~~~y~~f~~~~~~~~~l~~~~~~l~~~l~~l~~~i~~~~~~~~l~~~~~~~~~l~~ 109 (759)
.+....+++..--.++...+.+.++.||..|.+++.+=..+.+.+.+-+..+..++..+.+ ....+..--+++.+|..
T Consensus 37 g~~~~~~~f~~~~~~~~~~L~~vV~eh~q~Fn~sI~sy~~i~~~i~~sq~~i~~lK~~L~~--ak~~L~~~~~eL~~L~~ 114 (142)
T PF04048_consen 37 GRAHRYQEFEELKKRIEKALQEVVNEHYQGFNSSIGSYSQILSSISESQERIRELKESLQE--AKSLLGCRREELKELWQ 114 (142)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhcCCHHHHHHHH
Confidence 5677888888888889999999999999999999998888888888888888888887755 44455555556666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHH
Q 004360 110 EARVKKELLELVRAIVEIGERLKGV 134 (759)
Q Consensus 110 el~~~~~~~~~l~~l~~~~~~L~~~ 134 (759)
+-..-..++++|.+|.++.+.=+++
T Consensus 115 ~s~~~~~mi~iL~~Ie~l~~vP~ki 139 (142)
T PF04048_consen 115 RSQEYKEMIEILDQIEELRQVPDKI 139 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 6666666666777766665544443
No 16
>PF15469 Sec5: Exocyst complex component Sec5
Probab=93.65 E-value=2.1 Score=42.85 Aligned_cols=142 Identities=13% Similarity=0.168 Sum_probs=97.1
Q ss_pred hHHHHHHhhhhchHHHHhhhhhhhhhhhhhhhc------HHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004360 48 KVQSYIASHHQDFASLFSLCNDTVSRTDEISTD------LSDILGLISYRPIDKEVKEIIDEVSAKMKEARVKKELLELV 121 (759)
Q Consensus 48 ~v~~~i~~~y~~f~~~~~~~~~l~~~~~~l~~~------l~~l~~~i~~~~~~~~l~~~~~~~~~l~~el~~~~~~~~~l 121 (759)
+....+..+|..|........++..+...-..+ ++.|...|.+ +...-......+..-+........++.++
T Consensus 3 ~lk~LV~~Nf~~Fv~~k~tid~i~~~~~~~~~~~~~~~~~~~L~~~l~~--~~~~~~~~~~pll~~~~k~~~l~~~l~~l 80 (182)
T PF15469_consen 3 DLKSLVKENFDKFVSCKDTIDDIYEEFRNMKTEAQQDSGTEKLEESLNE--ASSKANSVFKPLLERREKADKLRNALEFL 80 (182)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHH--HHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 345567788888888877777777777554443 4555555433 22223333333445556667778888899
Q ss_pred HHHHHHHHhhHHHHHHhhcCchhhhHHHHHHHHhHhhccCCCCCCchhHHHhHHHHHHHHHHHHHHHHHHHHhhcc
Q 004360 122 RAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVGDENASEPLVYGLLRKEWLVCFEEIQELLVKFVESAVR 197 (759)
Q Consensus 122 ~~l~~~~~~L~~~~~~l~~~~~~~Aa~~L~~l~~~l~~~~~~~~~~~I~~~L~~~~~~l~~~i~~~L~~~~~~~v~ 197 (759)
+..+-+-..=...++++..|+|..|+..-.+++..++... ....|+.-+-.++....+.+...+ |+++..
T Consensus 81 ~r~~flF~LP~~L~~~i~~~dy~~~i~dY~kak~l~~~~~---~~~~vf~~v~~eve~ii~~~r~~l---~~~L~~ 150 (182)
T PF15469_consen 81 QRNRFLFNLPSNLRECIKKGDYDQAINDYKKAKSLFEKYK---QQVPVFQKVWSEVEKIIEEFREKL---WEKLLS 150 (182)
T ss_pred HHHHHHHHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHHH---HHHHhC
Confidence 9999998888999999999999999999999999987763 145566666666666665555544 454433
No 17
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=90.82 E-value=5.4 Score=49.00 Aligned_cols=129 Identities=11% Similarity=0.174 Sum_probs=94.6
Q ss_pred HHHHHHhhhccchhhhHhHHHHHHhhhhchHHHHhhhhhhhhhhhhhhhcHHHHHhhhcCCCcchHHHHHHHHHHHHHHH
Q 004360 31 LRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMKE 110 (759)
Q Consensus 31 l~~~i~~l~~~~~e~k~~v~~~i~~~y~~f~~~~~~~~~l~~~~~~l~~~l~~l~~~i~~~~~~~~l~~~~~~~~~l~~e 110 (759)
+..+..||+--++++-..+-+.+.+--..-=.......-+...+..|+.++..++..|+. ++.+-...+..+.++.+=
T Consensus 36 ls~l~~kLql~~qe~~~~le~~~~q~l~~~Pr~~~ev~~l~~ea~~L~~~~~~v~~~~~~--~e~~t~~s~~~L~~ld~v 113 (766)
T PF10191_consen 36 LSSLVMKLQLYSQEVNASLEETSQQALQRVPRVLREVDRLRQEAASLQEQMASVQEEIKA--VEQDTAQSMAQLAELDSV 113 (766)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhccHHHHHHHHHHHHHH
Confidence 666666777667766666655555444333344444556666677777777777777754 455555666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCchhhhHHHHHHHHhHhhccC
Q 004360 111 ARVKKELLELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVGD 161 (759)
Q Consensus 111 l~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~~~~~Aa~~L~~l~~~l~~~~ 161 (759)
-...+.....|++.........+++..+..|++..++..|.++++.|...+
T Consensus 114 K~rm~~a~~~L~EA~~w~~l~~~v~~~~~~~d~~~~a~~l~~m~~sL~~l~ 164 (766)
T PF10191_consen 114 KSRMEAARETLQEADNWSTLSAEVDDLFESGDIAKIADRLAEMQRSLAVLQ 164 (766)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHc
Confidence 666777778889999999999999999999999999999999999988775
No 18
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=84.65 E-value=1.5 Score=38.16 Aligned_cols=60 Identities=15% Similarity=0.186 Sum_probs=52.0
Q ss_pred chHHHHHHhhhccchhhhHhHHHHHHhhhhchHHHHhhhhhhhhhhhhhhhcHHHHHhhh
Q 004360 29 PDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLI 88 (759)
Q Consensus 29 ~dl~~~i~~l~~~~~e~k~~v~~~i~~~y~~f~~~~~~~~~l~~~~~~l~~~l~~l~~~i 88 (759)
.++...-.+|...+.+..+++...|..+|.+|.........+...+..+...+..+...+
T Consensus 22 ~~i~~~~~~L~~~i~~~~~eLr~~V~~nY~~fI~as~~I~~m~~~~~~l~~~l~~l~~~~ 81 (87)
T PF08700_consen 22 KEIRQLENKLRQEIEEKDEELRKLVYENYRDFIEASDEISSMENDLSELRNLLSELQQSI 81 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999998888887777777777666666654
No 19
>KOG2069 consensus Golgi transport complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.70 E-value=33 Score=39.98 Aligned_cols=160 Identities=13% Similarity=0.065 Sum_probs=108.9
Q ss_pred chHHHHHHhhhccchhhhHhHHHHHHhhhhchHHHHhhhhhhhhhhhhhhhcHHHHHhhhcCCCcchHHHHHHHHHHHHH
Q 004360 29 PDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKM 108 (759)
Q Consensus 29 ~dl~~~i~~l~~~~~e~k~~v~~~i~~~y~~f~~~~~~~~~l~~~~~~l~~~l~~l~~~i~~~~~~~~l~~~~~~~~~l~ 108 (759)
|.|++--.+|.....++-.+......++|..|....+-..+...-......+..++..++.. -++......+....+.
T Consensus 34 e~l~ke~~~La~e~~~i~~q~q~La~~ny~t~id~A~~~~~i~~~~~~~~~~~~~l~l~~~~--L~s~~~~f~~~~~~i~ 111 (581)
T KOG2069|consen 34 EELRKEKALLAEEAAKIDAQTQDLARDNYKTLIDTARNTDAIYQLFGRSRHDLKELSLQLPE--LTSPCKRFQDFAEEIS 111 (581)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhHH--hhhHHHHHHHHHHHhh
Confidence 36777777888888899999999999999999997777777776677777777776665433 2334444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCchhhhHHHHHHHHhHhhccCCCCCCchhHHHhHHHHHHHHHHHHHHH
Q 004360 109 KEARVKKELLELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVGDENASEPLVYGLLRKEWLVCFEEIQELL 188 (759)
Q Consensus 109 ~el~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~~~~~Aa~~L~~l~~~l~~~~~~~~~~~I~~~L~~~~~~l~~~i~~~L 188 (759)
.+-..+..++....++.++.+...--+.....|+|.+|.+.-.-+...=+..+ ...++..+..++......+.++|
T Consensus 112 e~~~~~~~~l~~~~~l~ellelp~lM~~cir~~~~~ealel~a~~~RL~~~~~----~~pvi~~i~~~v~~tv~~ll~qL 187 (581)
T KOG2069|consen 112 EHRRLNSLTLDKHPQLLELLELPQLMDRCIRNGYYDEALELAAYASRLKQRFG----TIPVIQEIATEVEQTVQKLLEQL 187 (581)
T ss_pred HhHHHHHHHHhhcchhHHHHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhcc----cchHHHHHHHHHHHHHHHHHHHH
Confidence 44456777777777777777777777788999999999877654444333332 22455556667666666666666
Q ss_pred HHHHHh
Q 004360 189 VKFVES 194 (759)
Q Consensus 189 ~~~~~~ 194 (759)
......
T Consensus 188 ~~~l~~ 193 (581)
T KOG2069|consen 188 IQQLRT 193 (581)
T ss_pred HHHHhh
Confidence 655543
No 20
>PF04437 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR007528 This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control [], that interacts with Rad50 only during late S and G2/M phases. RINT1 also functions in membrane trafficking from the endoplasmic reticulum(ER) to the Golgi complex in interphase cells [, , ]. In addition to this, the TIP-1 protein, which is involved in the retrograde transport from the Golgi to the ER []. They share a similar domain organisation with an N-terminal leucine heptad repeat rich coiled coil and an ~500-residue C-terminal RINT1/TIP20 domain, which might be a protein-protein interaction module necessary for the formation of functional complexes.; PDB: 3FHN_A.
Probab=80.54 E-value=1.6 Score=50.79 Aligned_cols=333 Identities=15% Similarity=0.182 Sum_probs=160.8
Q ss_pred hhhhccCCCccccccchHHHHhcchhHHHHHHHh-hccccCCchhhhhhhcc-ccceeeeccchhhHHHHHhhchhhccc
Q 004360 337 NFLSKVVPEDASKLADFQKIIDHTSEFEAALKEM-MFISASDNKDARLSNFA-ENVEVHFASRKKTEILAKARNLLLQCD 414 (759)
Q Consensus 337 ~~L~~aIP~~~~~l~~f~~vi~~~~~Fe~~L~~l-gf~~~~~~~~~~L~~~v-~~i~~~~~~krr~~~L~~aR~ll~~~d 414 (759)
+.+...+|...++-.-|..++.++..|.+.|++. |+.+ +. +...+.-++ +.+=..|++=-++..+.+--++|..
T Consensus 80 ~Kl~~~l~~~~~~~~~l~HlI~e~~~FD~~L~~~~~y~~-d~-~~~~~~vL~~~~~~~~Wl~~E~~~a~~r~~~i~~s-- 155 (494)
T PF04437_consen 80 EKLRSDLPELLDDPSLLSHLIDEILSFDKELRSLYGYPG-DW-QGSTLDVLCQPDWFDRWLNAEKEFALERFDEIISS-- 155 (494)
T ss_dssp HHHHHHH--TTS-HHHHHHHHHHHHHHHHHHHHTS---S--------CGGGS-HHHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHcCCCC-cc-chhHHHHhcchHHHHHHHHHHHHHHHHHHhhhccc--
Confidence 3344456777788888899999999999999988 4433 00 001111121 1122234444444444444444432
Q ss_pred cccccccCCCCCcccCCCccccCcccchhhhhccchhhHHHHHHHHHHHHHHHHhhhhhcchh-hHHHHh-hhhhhhhhh
Q 004360 415 FAVPQESTGKDPICKNDGMAVDSSEHVVDLLFMSERCVVTKAASQLMKLVHQILQDICLSSTR-VAFEFY-HAARDAILL 492 (759)
Q Consensus 415 ~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~c~IS~~~~~l~~Li~~~L~ea~~ss~~-~a~~L~-~~~~~i~~L 492 (759)
.++|..+ .+. ........+.+.++..+++|+..+-+--..-+.. .-.+.+ .+--.+++-
T Consensus 156 ---------~~aw~~~------~~~----~~~~~~~~k~t~~A~~~~~Ll~~it~ry~~L~~~~~rl~Fl~~iql~lld~ 216 (494)
T PF04437_consen 156 ---------PDAWQID------YDD----VEADSDELKPTKSAERFVKLLESITDRYRPLPSLSHRLRFLIDIQLPLLDD 216 (494)
T ss_dssp -----------------------------HTTSSGGGG-GGHHHHHHHHHHHHHHHHHHHHH---GG--GHHHHHHHHHH
T ss_pred ---------chhhhhh------hcc----ccCCchhhcchHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHH
Confidence 2344211 010 0011235567788899999998887655311100 000112 333444444
Q ss_pred hhhcccchhhh---------hccCcc--eeeeeecCcchhhhhhhhhceeee--cc--------CCC--cccc-h-----
Q 004360 493 YEAIVPVKLER---------QLEGIN--QVAVLMHNDCLYLSQEILGFAFEY--HS--------DFP--SSIK-E----- 543 (759)
Q Consensus 493 y~a~~P~~~~~---------~l~~~p--~~a~l~yNDc~YLa~~L~~l~~~~--~~--------~l~--~~~~-~----- 543 (759)
|+.-....|.. ...+.+ ...+..+|.+.|+.+.|...+.+. .. .-+ .++. .
T Consensus 217 ~~~~L~~~~~~~~~~~s~~~~~~~~~~l~~l~~~lnsa~yi~~~L~eW~e~~~Flq~~~~~~~~~~~~~~~~~~~~~~~~ 296 (494)
T PF04437_consen 217 YHDRLSQSLEAFESSTSTLASLSGDSGLERLCKILNSANYIENVLREWSEDVFFLQMRAKESESSNNSLEDIANETSSEE 296 (494)
T ss_dssp THHHHHHHHHHHHHT----SCEEHHHHHHHHHHHHHHHHHHHHHHHHHCTSHHHH------------HHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHhhcccchhhccCCchHHHHHHHHHHHHHHHHHHHHhcCCCeeehhhccchhhcccccccccccccCCC
Confidence 44433333211 111111 234678999999999999988762 10 001 0111 1
Q ss_pred hhhhccccchhhchHHHHHhHhHHhhhhhhhhhhcc---Cccccchhhh--hhccccccceeeeeeeeeeeeeccccccC
Q 004360 544 HAVFADMAPRFHLMAEEILQRQIQIVIFNLREALDG---ADGFQNTHQI--QQFESAKFSIEQVVFILEKVHIIWEPLLL 618 (759)
Q Consensus 544 ~~~f~d~~~~~r~~~~~~~~~qi~~~~~~l~~~L~~---a~gf~~~~~~--~~~~~~~~av~q~~~~L~~L~~~W~~vLp 618 (759)
-..|-+.+..++.+.......-++....++++.+.. ...|.....+ .........+...+..|+..=..-...||
T Consensus 297 ~siFde~i~~y~~l~~~~~~~iv~~v~~~~k~~lk~Y~k~~~W~~~~~~~~~~~~~~S~el~~~L~~L~~~L~~L~~~L~ 376 (494)
T PF04437_consen 297 GSIFDETISAYEKLRKRMLESIVDRVVKEFKASLKAYFKRSQWSSIESPSDSSPLSPSPELVPALSLLRSRLSFLERSLP 376 (494)
T ss_dssp S-TTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTHHHHT--GGGT-------------GGGHHHHHHHHHHHHHHHTS--
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCCCcccccccccCCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 124666666677766555444444444444444321 2345443222 00111111233344444444444456699
Q ss_pred ccccchhhHHHHHHHHHHhhhhhhcccccchHhHHhHHHHHHHHHHhHHHHHHHHHHhhcCCCCCCCCCCCchhhhhhHH
Q 004360 619 PSTYNRSMCTVLESVFSRITRDILLLDDMAAEETLQLQRLIHLMLENLSSLLESLAAVNQKGKTEGDFARPLDDLIPSLC 698 (759)
Q Consensus 619 ~~vy~~~ig~Ll~~~~~~ii~~Il~l~DIs~~es~~L~~l~~~~~~~l~~lF~~~~~~~~~~~~~~~~~~~~~~~v~~W~ 698 (759)
+..|.+.--.+++.+..-+.+.|+...-.|+.-+.|+..=++. +-.+|.+. ....-..|.
T Consensus 377 ~~~f~~i~r~ia~~l~~~l~~~Il~~n~Fs~~Ga~Ql~~D~~~----L~~~~~~~----------------~~~p~~~f~ 436 (494)
T PF04437_consen 377 PADFRRIWRRIASKLDDYLWESILMSNKFSRAGAAQLQFDMRA----LFSVFSQY----------------TPRPEAFFK 436 (494)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTTTS-B-HHHHHHHHHHHHH----HHTTS--T----------------TSGG-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCeeChhHHHHHHHHHHH----HHHHHHhh----------------ccCHHHHHH
Confidence 9999999999999999999999999999999999887543332 22222221 011245788
Q ss_pred HHHHHHHHhcCcch
Q 004360 699 KFRKLAELLDMPLR 712 (759)
Q Consensus 699 K~~~L~~iL~~sL~ 712 (759)
|+.+...+|+.+-.
T Consensus 437 ~l~E~~~LL~L~~~ 450 (494)
T PF04437_consen 437 RLREACKLLNLPYG 450 (494)
T ss_dssp HHHHHHHHHGGGG-
T ss_pred HHHHHHHHcCCCCc
Confidence 99999999986544
No 21
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=79.29 E-value=39 Score=35.45 Aligned_cols=40 Identities=15% Similarity=0.037 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccccccCCeEEEEEEEe
Q 004360 173 LRKEWLVCFEEIQELLVKFVESAVRFEKESNRVLVKYQLT 212 (759)
Q Consensus 173 L~~~~~~l~~~i~~~L~~~~~~~v~~~~~~~~i~v~~~~~ 212 (759)
+..+-..|++.+-..|...|.++..|..+-+-+.+.-+.|
T Consensus 161 ~~~~~~~L~~~l~~ell~~yeri~~~~kg~gvvpl~g~~C 200 (239)
T COG1579 161 LSSKREELKEKLDPELLSEYERIRKNKKGVGVVPLEGRVC 200 (239)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhcCCCceEEeecCCcc
Confidence 5566677888888888999999888765445555555443
No 22
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=79.00 E-value=44 Score=37.65 Aligned_cols=131 Identities=11% Similarity=0.114 Sum_probs=73.9
Q ss_pred CcchHHHHHHhhhccchhhhHhHHHHHHhhhhchHHHHhhhhhhhhhhhhhhhcHHHHH-hhhcCCCcchHHHHH----H
Q 004360 27 TAPDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDIL-GLISYRPIDKEVKEI----I 101 (759)
Q Consensus 27 ~~~dl~~~i~~l~~~~~e~k~~v~~~i~~~y~~f~~~~~~~~~l~~~~~~l~~~l~~l~-~~i~~~~~~~~l~~~----~ 101 (759)
+.|.+..++.||.++++|++.+|-.. .....+...---.-.++..+++.++..|+.+. ..+-. ...+.+. -
T Consensus 88 e~Es~~~kl~RL~~Ev~EL~eEl~~~-~~~~~~~~~e~~~~~~l~~~~~~L~~~L~~l~l~~~lg---~~~~~~~~~~~~ 163 (388)
T PF04912_consen 88 EKESPEQKLQRLRREVEELKEELEKR-KADSKESDEEKISPEELAQQLEELSKQLDSLKLEELLG---EETAQDLSDPQK 163 (388)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHH-hhcccccccccCChhhHHHHHHHHHHHHHHhhcccccc---hhhhcccccchh
Confidence 56789999999999999999999753 22222221112223345667777777777772 11100 0011110 0
Q ss_pred HHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHhhHHHHHHhhcCc-----------hhh
Q 004360 102 DEVSAKMKEARVK-------------------------KELLELVRAIVEIGERLKGVKEALRDGR-----------LRF 145 (759)
Q Consensus 102 ~~~~~l~~el~~~-------------------------~~~~~~l~~l~~~~~~L~~~~~~l~~~~-----------~~~ 145 (759)
....++.+++... +.-...+..+..+..||...+.+++-+. ...
T Consensus 164 ~~~~kl~~~l~~~k~~~~~~~~~~~~~~ityel~~~p~~~~~~~la~~a~LE~RL~~LE~~lG~~~~~~~~l~~~~~~~~ 243 (388)
T PF04912_consen 164 ALSKKLLSQLESFKSSSGAGSSPANSDHITYELYYPPEQAKSQQLARAADLEKRLARLESALGIDSDKMSSLDSDTSSSP 243 (388)
T ss_pred hHHHHHHHhhhhcccccccCCCCCCCCceeeeeecCcccchhhHHHHHHHHHHHHHHHHHHhCCCccccccccccCCcch
Confidence 1122233333222 1223567899999999999999988732 112
Q ss_pred hHHHHHHHHhHhhccC
Q 004360 146 AAEELRELKKDLRVGD 161 (759)
Q Consensus 146 Aa~~L~~l~~~l~~~~ 161 (759)
=+..+..+...+..+.
T Consensus 244 l~~~l~~L~~~lslL~ 259 (388)
T PF04912_consen 244 LLPALNELERQLSLLD 259 (388)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 3344555666665553
No 23
>PF06046 Sec6: Exocyst complex component Sec6; InterPro: IPR010326 Sec6 is a component of the multiprotein exocyst complex. Sec6 interacts with Sec8, Sec10 and Exo70.These exocyst proteins localise to regions of active exocytosis-at the growing ends of interphase cells and in the medial region of cells undergoing cytokinesis-in an F-actin-dependent and exocytosis- independent manner [].; PDB: 2FJI_2.
Probab=78.88 E-value=3.2 Score=49.03 Aligned_cols=232 Identities=15% Similarity=0.226 Sum_probs=132.5
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhc-chhhHHHHhhhhhhhhhhhhhcccchhhhhcc------------Ccceeeeeec
Q 004360 450 RCVVTKAASQLMKLVHQILQDICLS-STRVAFEFYHAARDAILLYEAIVPVKLERQLE------------GINQVAVLMH 516 (759)
Q Consensus 450 ~c~IS~~~~~l~~Li~~~L~ea~~s-s~~~a~~L~~~~~~i~~Ly~a~~P~~~~~~l~------------~~p~~a~l~y 516 (759)
-|-+|..|..++.+|.+.+.-|+.+ ...+...........+..|+.-.-.+..+.+. .....-+-+-
T Consensus 243 g~y~t~~~~difqmi~qql~va~~~l~~~v~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eyliA~~ 322 (566)
T PF06046_consen 243 GYYHTPLPVDIFQMINQQLDVASESLQGKVLQRVLEELANFLKSYQDAWQEFKEEHFKDRSSVKPKENPPGYLEYLIAVA 322 (566)
T ss_dssp S-EE-HHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--S-HHHHHHHHH
T ss_pred CCeecCcHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccchHHHHHHHh
Confidence 4668889999999999999988432 22222233333334444444444333333321 1122336678
Q ss_pred CcchhhhhhhhhceeeeccCCCcccch--hhhhccccchhhchHHHHHhHhHHhhhhhhhhhhccCccccchhhhhhccc
Q 004360 517 NDCLYLSQEILGFAFEYHSDFPSSIKE--HAVFADMAPRFHLMAEEILQRQIQIVIFNLREALDGADGFQNTHQIQQFES 594 (759)
Q Consensus 517 NDc~YLa~~L~~l~~~~~~~l~~~~~~--~~~f~d~~~~~r~~~~~~~~~qi~~~~~~l~~~L~~a~gf~~~~~~~~~~~ 594 (759)
|||..++..+..+...+.....+.... ...|-.+...|-.++..+.+.-++.....|...+... |.. .=+..
T Consensus 323 N~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~~if~Dl~p~~~~L--ft~----~W~~~ 396 (566)
T PF06046_consen 323 NNCLRCRDYVESLEQKFEEKVSQKYMERISSDLEELMDGFDDLAKECCQYLLEEIFNDLKPHFKKL--FTK----KWYSG 396 (566)
T ss_dssp HHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHCTHHHHCTT--TSG----GGCTS
T ss_pred ccHHHHHHHHHHHHHhcccccchHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh--CcC----cCcCc
Confidence 999999997777766654443321111 1235555566667777766666655555555555433 211 11111
Q ss_pred cccceeeeeeeeeeeeeccccccCccccchhhHHHHHHHHHHhhhhhhcc------cccchHhHHhHHHHHHHHHHhHHH
Q 004360 595 AKFSIEQVVFILEKVHIIWEPLLLPSTYNRSMCTVLESVFSRITRDILLL------DDMAAEETLQLQRLIHLMLENLSS 668 (759)
Q Consensus 595 ~~~av~q~~~~L~~L~~~W~~vLp~~vy~~~ig~Ll~~~~~~ii~~Il~l------~DIs~~es~~L~~l~~~~~~~l~~ 668 (759)
.+++.++..++.-..--+..|.++.|...++.+.+.++.+-+..++.- ......-+.++..= .+.+.+
T Consensus 397 --~~~~~I~~Ti~dY~~d~~~~l~~~~~~~l~~~~~~~~v~~Yl~~l~~kk~~~~~~~~~~~~a~~i~~D----~~~l~~ 470 (566)
T PF06046_consen 397 --EAVDTICATIEDYLQDFQHYLRPPYFQELIEELHDRVVKEYLRALMKKKIKFKNKEERKEAAERIRRD----AEQLKS 470 (566)
T ss_dssp ---HHHHHHHHHHHHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHGGGG---------CCCCCHHHHHHH----HHHHHH
T ss_pred --chHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHHH----HHHHHH
Confidence 346677777777666667778889999999999999999999888872 33444445554332 344566
Q ss_pred HHHHHHHhhcCCCCCCCCCCCchhhhhhHHHHHHHHHHh
Q 004360 669 LLESLAAVNQKGKTEGDFARPLDDLIPSLCKFRKLAELL 707 (759)
Q Consensus 669 lF~~~~~~~~~~~~~~~~~~~~~~~v~~W~K~~~L~~iL 707 (759)
+|..... ....-..|..+..+..+|
T Consensus 471 ~F~~~~~--------------~~~~~~~~~~l~~l~~ll 495 (566)
T PF06046_consen 471 FFSKLGS--------------KSEVKSSFDVLEDLLELL 495 (566)
T ss_dssp HHHHHTH--------------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcc--------------cccccchHHHHHHHHHHH
Confidence 6665421 012234666777888887
No 24
>KOG0412 consensus Golgi transport complex COD1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.21 E-value=1e+02 Score=37.09 Aligned_cols=127 Identities=18% Similarity=0.282 Sum_probs=81.6
Q ss_pred hhccccccceeeeeeeeeeeeeccccccCccccchhhHHHHHHHHHHhhhhhhcccccchHhHHhHHHHHHHHHHhHHHH
Q 004360 590 QQFESAKFSIEQVVFILEKVHIIWEPLLLPSTYNRSMCTVLESVFSRITRDILLLDDMAAEETLQLQRLIHLMLENLSSL 669 (759)
Q Consensus 590 ~~~~~~~~av~q~~~~L~~L~~~W~~vLp~~vy~~~ig~Ll~~~~~~ii~~Il~l~DIs~~es~~L~~l~~~~~~~l~~l 669 (759)
..+++.+.=|.+-++++.++-...++.|.+..|....+-+++.+...+=..|...+ ...-=+.+|-+=++.+ -.-
T Consensus 636 ~~~ea~d~~Vq~fl~~v~~l~~~~k~~ltp~nY~sLlsl~~~~ia~~LE~~i~k~~-FNrlG~lqLDre~r~l----is~ 710 (773)
T KOG0412|consen 636 AAYEANDPWVQQFLSSVEQLLAELKNSLTPENYDSLLSLIVDEIATQLEQIIWKIQ-FNRLGGLQLDRELRAL----ISY 710 (773)
T ss_pred hhhccCChHHHHHHHHHHHHHHhhhcccChhhHHHHHHHHHHHHHHHHHHHHHHhH-HHhhcchHhhHHHHHH----HHH
Confidence 45666676788888888888888889999999999888888887776643333321 1111121211111110 011
Q ss_pred HHHHHHhhcCCCCCCCCCCCchhhhhhHHHHHHHHHHhcC-cchhhhhhhccCc-eeecccchHHHHHH
Q 004360 670 LESLAAVNQKGKTEGDFARPLDDLIPSLCKFRKLAELLDM-PLRSITAAWESGE-LLSCGFTLSEIEDF 736 (759)
Q Consensus 670 F~~~~~~~~~~~~~~~~~~~~~~~v~~W~K~~~L~~iL~~-sL~dI~~~w~~G~-ll~~~fs~~Ev~~L 736 (759)
|. ++ . . ...-.+..|++++..+|+- .-.+|.+-|.... ++...+|++||+..
T Consensus 711 lt-------~~-t---~----~~lRdKf~RLtQIatLLnle~~se~le~w~~~~g~~twrLt~~EVr~v 764 (773)
T KOG0412|consen 711 LT-------GV-T---Q----WNLRDKFARLTQIATLLNLEKDSEILEYWGPNSGPLTWRLTPAEVRKV 764 (773)
T ss_pred hh-------cc-c---c----hhHHHHHHHHHHHHHHHcccccchHHHhcCCCCCCceEEeCHHHHHHH
Confidence 11 00 0 0 1223467788888889987 8888999999886 77888999999874
No 25
>KOG2211 consensus Predicted Golgi transport complex 1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.30 E-value=99 Score=36.88 Aligned_cols=126 Identities=14% Similarity=0.125 Sum_probs=72.8
Q ss_pred CCcchHHHHHHhhhccchhhhHhHHHHHHhhhhchHHHHh-------hhhhhhhhhhhhhhcHHHHHhhhcCCCcchHHH
Q 004360 26 LTAPDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFS-------LCNDTVSRTDEISTDLSDILGLISYRPIDKEVK 98 (759)
Q Consensus 26 l~~~dl~~~i~~l~~~~~e~k~~v~~~i~~~y~~f~~~~~-------~~~~l~~~~~~l~~~l~~l~~~i~~~~~~~~l~ 98 (759)
++.--+..-+++|+..+.+++.+.+..+.+|+.+...-.- ..+.+..++.+++..++.+++.+.+ |.+
T Consensus 68 ~~s~~ia~q~~~L~q~lr~ldrqLh~qv~~Rh~allaQat~~~~~d~~l~sl~~~v~~lqs~i~riknd~~e-pyk---- 142 (797)
T KOG2211|consen 68 KESNRIATQCDDLTQKLRELDRQLHAQVLKRHMALLAQATEELFEDLELRSLLVKVAELQSEIKRIKNDNKE-PYK---- 142 (797)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh-HHH----
Confidence 3444678889999999999999999999999986543221 1234456666777777777766544 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhHHHHHHhhcCchhhhHHHHHHHHhHhhccC
Q 004360 99 EIIDEVSAKMKEARVKKELLELVRA---IVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVGD 161 (759)
Q Consensus 99 ~~~~~~~~l~~el~~~~~~~~~l~~---l~~~~~~L~~~~~~l~~~~~~~Aa~~L~~l~~~l~~~~ 161 (759)
.+-..+.++...+.+..+|+. +-++.+.|...... ...+...||+.+-++...++...
T Consensus 143 ----~i~~kt~vl~rLhva~~lLrrsgr~l~LskkL~~l~~~-~~~d~traaq~lneLd~l~e~~d 203 (797)
T KOG2211|consen 143 ----IIWLKTMVLTRLHVAENLLRRSGRALELSKKLASLNSS-MVVDATRAAQTLNELDSLLEVLD 203 (797)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CCHhHHHHHHHHHHHHHHHHHhh
Confidence 111111222222222222222 22334444433222 12236788888888888877765
No 26
>KOG1961 consensus Vacuolar sorting protein VPS52/suppressor of actin Sac2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=76.07 E-value=29 Score=40.53 Aligned_cols=158 Identities=11% Similarity=0.116 Sum_probs=97.7
Q ss_pred chhhccccCCCCCCCCCCCcchHHHHHHhhhccchhhhHhHHHHHHhhhhchHHHHhhhhhhhhhhhhhhhcHHHHHhhh
Q 004360 9 NVRDLLSTHDLTDQTAPLTAPDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLI 88 (759)
Q Consensus 9 ~~~~~~~~~~~~~~~~~l~~~dl~~~i~~l~~~~~e~k~~v~~~i~~~y~~f~~~~~~~~~l~~~~~~l~~~l~~l~~~i 88 (759)
-|++.|.++|-.+|.+. ++...+.++++.+-| +|....+..++++.|.++...=+.++.+.+
T Consensus 37 ~v~~~lktg~~lr~y~~----~ve~~l~k~e~~Siq--------------dyi~es~~~~~lhNqi~~cd~Vl~rme~~L 98 (683)
T KOG1961|consen 37 LVKEALKTGDDLREYSK----QVENELRKAERKSIQ--------------DYIKESENLASLHNQIRACDSVLERMETML 98 (683)
T ss_pred HHHHHHhcCCcchHHHH----HHHHHHHHHHhhhhH--------------HHHHhhhhhhhHhhhHHHHHHHHHHHHHHH
Confidence 46777777776666655 666666666665555 677777777888888887777777777777
Q ss_pred cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH---------------hhcCchhhhHHHHHHH
Q 004360 89 SYRPIDKEVKEIIDEVSAKMKEARVKKELLELVRAIVEIGERLKGVKEA---------------LRDGRLRFAAEELREL 153 (759)
Q Consensus 89 ~~~~~~~~l~~~~~~~~~l~~el~~~~~~~~~l~~l~~~~~~L~~~~~~---------------l~~~~~~~Aa~~L~~l 153 (759)
+. ++.++..+.+++..++++-...+ ..|+.-+.+...|+++=.. +.+..|.+ .|+++
T Consensus 99 ~~--FQ~~L~sissDI~~lqekS~~m~---~~L~Nrq~v~s~Ls~fVdd~iVpp~lI~~I~~g~vne~~f~~---~LeeL 170 (683)
T KOG1961|consen 99 SS--FQSDLSSISSDIKILQEKSNDMQ---LRLENRQAVESKLSQFVDDLIVPPELIKTIVDGDVNEPEFLE---ALEEL 170 (683)
T ss_pred HH--HHHHHHhHHHHHHHHHHHhhHHH---HHHHhHHHHHHHHHHHhccccCCHHHHHHHHcCCCCchHHHH---HHHHH
Confidence 65 77888888888776655433222 2334444444444442211 23334444 45555
Q ss_pred HhHhhccC--CCCCCchhHHHhHHHHHHHHHHHHHHHHHHH
Q 004360 154 KKDLRVGD--ENASEPLVYGLLRKEWLVCFEEIQELLVKFV 192 (759)
Q Consensus 154 ~~~l~~~~--~~~~~~~I~~~L~~~~~~l~~~i~~~L~~~~ 192 (759)
.+.++.+. ...+++...+.+...+..||....+..+++-
T Consensus 171 ~~Kl~~v~~dq~~k~a~a~~Dv~~lLdkLR~KAi~kir~~I 211 (683)
T KOG1961|consen 171 SHKLKLVELDQSNKDAKALKDVEPLLDKLRLKAIEKIREFI 211 (683)
T ss_pred HHHHHhhhhhhhccchhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 66665553 3446777788888888888877766665543
No 27
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=75.28 E-value=48 Score=39.32 Aligned_cols=102 Identities=22% Similarity=0.247 Sum_probs=69.2
Q ss_pred hHHHHhhhhhhhhhhhhhhhcHHHHHhhhcCC-----CcchHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH
Q 004360 60 FASLFSLCNDTVSRTDEISTDLSDILGLISYR-----PIDKEVKEIIDEVSAKMKEAR-----VKKELLELVRAIVEIGE 129 (759)
Q Consensus 60 f~~~~~~~~~l~~~~~~l~~~l~~l~~~i~~~-----~~~~~l~~~~~~~~~l~~el~-----~~~~~~~~l~~l~~~~~ 129 (759)
|....+...++...++.+..+++.+...|..- ..+..+...-..+..+++++- |-.+.-.+-+++..+..
T Consensus 96 f~ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~ 175 (560)
T PF06160_consen 96 FKKAKQAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEE 175 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHH
Confidence 44444444444455555555555544443220 122355555666667777764 55666677888999999
Q ss_pred hhHHHHHHhhcCchhhhHHHHHHHHhHhhccC
Q 004360 130 RLKGVKEALRDGRLRFAAEELRELKKDLRVGD 161 (759)
Q Consensus 130 ~L~~~~~~l~~~~~~~Aa~~L~~l~~~l~~~~ 161 (759)
.+.++.+....|++..|.+.|.+++..+..+.
T Consensus 176 ~F~~f~~lt~~GD~~~A~eil~~l~~~~~~l~ 207 (560)
T PF06160_consen 176 EFSEFEELTENGDYLEAREILEKLKEETDELE 207 (560)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998888877664
No 28
>KOG2346 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.89 E-value=15 Score=41.79 Aligned_cols=149 Identities=12% Similarity=0.016 Sum_probs=94.7
Q ss_pred hccchhhhHhHHHHHHhhhhchHHHHhhhhhhhhhhhhhhhcHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 004360 39 EFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMKEARVKKELL 118 (759)
Q Consensus 39 ~~~~~e~k~~v~~~i~~~y~~f~~~~~~~~~l~~~~~~l~~~l~~l~~~i~~~~~~~~l~~~~~~~~~l~~el~~~~~~~ 118 (759)
-.++..+-++++-.+..+|..|.+.-....-+-+...++..+++.+...+.+ |+....-...-+.+....+....+..
T Consensus 59 V~qIRaLDSDmqtLVYENYNKFisATdTirkmk~~f~~me~eMd~L~~~ms~--i~~~s~~l~g~L~ekre~I~kLg~~~ 136 (636)
T KOG2346|consen 59 VQQIRALDSDMQTLVYENYNKFISATDTIRKMKSNFFGMEQEMDGLEEVMSS--IQSKSDGLAGSLFEKRELIKKLGQRP 136 (636)
T ss_pred HHHHHHhchHHHHHHHhhcchhhhcchHHHHHHhhhhhhcchhhhHHHHHHH--HhhhhccccchhHHhHHHHHHhcCCc
Confidence 3456667788999999999999988666666666666666666666655433 22222122222222233333444444
Q ss_pred HHHHHHHHHHHhhHHHHHHhhcCchhhhHHHHHHHHhHhhccCCCCCCchhHHHhHHHHHHHHHHHHHHHHHHHH
Q 004360 119 ELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVGDENASEPLVYGLLRKEWLVCFEEIQELLVKFVE 193 (759)
Q Consensus 119 ~~l~~l~~~~~~L~~~~~~l~~~~~~~Aa~~L~~l~~~l~~~~~~~~~~~I~~~L~~~~~~l~~~i~~~L~~~~~ 193 (759)
.++.+++-+...=...+...+.+.|.+|...-..+...++.-+. ..-+......-.+.+..+.++|.....
T Consensus 137 ~llrkvqfifdLP~rLrkc~~~~aYG~avR~~~~A~~~L~qY~~----~psfq~~~~~seei~~rl~~qL~~rlr 207 (636)
T KOG2346|consen 137 PLLRKVQFIFDLPRRLRKCGRAPAYGAAVRGSSEATGKLRQYDG----RPSFQEDDVPSEEIRLRLVAQLGTKLR 207 (636)
T ss_pred cchhhhHHHhhhHHHHHHhccccccchhhccccccccchhhcCC----CCcHHHhccchHHHHHHHHHHHHHHhc
Confidence 56666666666666677788999999999998888888877651 112344455556667777777776654
No 29
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.22 E-value=21 Score=40.18 Aligned_cols=114 Identities=18% Similarity=0.159 Sum_probs=78.2
Q ss_pred HHHHHHhhhccchhhhHhHHHHHHhhhh----chHHHHhhhhhhhhhhhhhhhcHHHHHhhhcCCCcchHHHHHHHHHH-
Q 004360 31 LRLLISRLEFHSLQIKSKVQSYIASHHQ----DFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVS- 105 (759)
Q Consensus 31 l~~~i~~l~~~~~e~k~~v~~~i~~~y~----~f~~~~~~~~~l~~~~~~l~~~l~~l~~~i~~~~~~~~l~~~~~~~~- 105 (759)
|.+.|+.|..++++.+.++.-++++-.. .|+.-...++.-..+-......++.+.++|.++.....|-++...=+
T Consensus 245 L~kqie~L~qeie~~~~~~r~~~k~g~K~iA~~ylr~rk~~eK~~er~~~~l~~l~~vl~~Id~s~~nkvvl~AyksGs~ 324 (439)
T KOG2911|consen 245 LAKQIEFLEQEIEKSKEKLRQALKEGKKQIAITYLRARKLLEKDLERKVSSLNNLETVLSQIDNSQTNKVVLQAYKSGSE 324 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhHH
Confidence 5567777777777777777777766554 46666667777777777778888888999888666666666655422
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHhhHHHHHHhhcCchh
Q 004360 106 AKMKEAR---VKKELLELVRAIVEIGERLKGVKEALRDGRLR 144 (759)
Q Consensus 106 ~l~~el~---~~~~~~~~l~~l~~~~~~L~~~~~~l~~~~~~ 144 (759)
.++.-+. ...-+.++|.+|++-..+-++++.++..+.+.
T Consensus 325 alK~il~~~~s~ekVed~Ldev~et~d~~~EV~~~la~~~~~ 366 (439)
T KOG2911|consen 325 ALKAILAQGGSTEKVEDVLDEVNETLDRQEEVEDALASYNVN 366 (439)
T ss_pred HHHHHHhccCChhhHHHHHHHHHHHHhhHHHHHHHHhcCCCC
Confidence 2222222 34447778888888888888888777766654
No 30
>PF11988 Dsl1_N: Retrograde transport protein Dsl1 N terminal; InterPro: IPR021875 Dsl1 is a peripheral membrane protein required for transport between the Golgi and the endoplasmic reticulum []. It is localised to the ER membrane, and in vitro it specifically binds to coatomer, the major component of the protein coat of COPI vesicles []. It is comprised primarily of alpha helical bundles []. It complexes with another subunit of the Dsl1p complex called Tip20 which forms heterodimers by pairing the N termini of each protein []. A central disorganised region between the N and C termini of Dsl1 contains binding sites for coatomer []. The C terminus of Dsl1 contains a binding site to the Sec39 subunit of the Dsl1p complex []. ; PDB: 3K8P_C 3ETV_A 3ETU_A.
Probab=69.89 E-value=12 Score=40.84 Aligned_cols=221 Identities=14% Similarity=0.166 Sum_probs=109.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCchhhhHHHHHHHHhHhhccCCCC-CCchhHHHhHHHHHHHHHHHH
Q 004360 107 KMKEARVKKELLELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVGDENA-SEPLVYGLLRKEWLVCFEEIQ 185 (759)
Q Consensus 107 l~~el~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~~~~~Aa~~L~~l~~~l~~~~~~~-~~~~I~~~L~~~~~~l~~~i~ 185 (759)
+++|.+-++++. .+.+++.+...+.|++.-++--++..+-..|+.+++.++..+... ..-.-=+.+..-+..++..+.
T Consensus 37 l~~e~~Ls~eL~-~l~~LK~is~Li~EfktN~ellElENCyYSLqnLrKKlk~n~~~lkqs~~FQqSvatYVDsLHl~Lv 115 (354)
T PF11988_consen 37 LQRESQLSKELH-DLNSLKTISSLIKEFKTNFELLELENCYYSLQNLRKKLKNNDSFLKQSFRFQQSVATYVDSLHLKLV 115 (354)
T ss_dssp HCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-CCHHCS-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHhHhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccHHhhcchhhhhhHHHHHHHHHHHHH
Confidence 445555555554 667799999999999999999999999999999999998876432 222222334444444444444
Q ss_pred HHHHHHHHhhccccccCCeEEEEEEEeecCcc-cchHHHHHHHHHH-------------------HHhhhhhhhhhhhhh
Q 004360 186 ELLVKFVESAVRFEKESNRVLVKYQLTVDGLD-GIELRTVLEAMEV-------------------VGILDYGLAKVADLK 245 (759)
Q Consensus 186 ~~L~~~~~~~v~~~~~~~~i~v~~~~~~~~~~-~~~L~~vl~AL~~-------------------lg~l~~~l~~l~~~L 245 (759)
..+.+....- -|.-++++++.+-.+.-+..+ .....+++.-+.. +|.+...+. ..
T Consensus 116 ~kl~~ilt~~-FW~I~~~si~F~~~I~~g~D~v~~~Yd~f~~f~~~~~fp~~~lD~~~WfI~dm~l~d~qe~Vr----~k 190 (354)
T PF11988_consen 116 SKLYEILTNK-FWNITSNSISFNPKIEWGKDDVDFEYDTFMDFVKSQFFPQNVLDPESWFISDMSLGDLQEKVR----NK 190 (354)
T ss_dssp HHHHHHHHCT-TEEE-SSEEEE-SEEEETTTTEEEEHHHHHHHHHHHH-CCCS--TTSHHHHT-SSHHHHHHHH----HH
T ss_pred HHHHHHHhcc-ceeecCCeEEeccceeecCcceeeecHHHHHHHHHccCCCCCCCcccceeeecccchHHHHHH----HH
Confidence 4444443331 134445665544444332211 2233333333322 333333333 22
Q ss_pred hhhhcccccccCCccchhhh-cCCCchhhH--H--HHHhhccCCCccccccCcceeehhHHHHHHHhhhhhcccC-Ccee
Q 004360 246 IKYVISPAVSYGSPITFVEE-LNPGPEKMS--E--AILRMVPSVDDKIENVDGKTIYSGIIQVVKFIHKRICLQN-GSWV 319 (759)
Q Consensus 246 ~~~il~Pli~~~~~~~~v~~-~~~~~~~~~--~--~~L~~~~~~~~~~~~~~~~~v~~~l~~vl~FL~~~L~~~n-~~l~ 319 (759)
++.|+.-.|.-......+.. +-.++..++ + ..|.+..+ ...++..+.+...+...+..|+...+...+ ..++
T Consensus 191 L~~I~~~Yi~l~~v~~~iK~~iF~~~~~~~~~~~~~kL~~~~s--~~~g~~~~~~~i~Sf~~l~~Fl~~~ls~~d~~~l~ 268 (354)
T PF11988_consen 191 LNTILKDYIKLNSVIEMIKEFIFSDSKEFSYSDNNNKLSFKQS--SSNGQDKLQETIESFQNLVDFLLETLSPRDKNILL 268 (354)
T ss_dssp HHHHHHHHTS-HHHHHHHHCCTT-TTEEEEEETTTTEEEEEE----------HHHHHHHHHHHHHHHHHTS-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCceEEEcCCCCeEEEEec--ccCCcchHHHHHHHHHHHHHHHHhccCHhHHHHHH
Confidence 22232222221111000000 000000000 0 22333322 111223455667788999999999987543 3677
Q ss_pred eecccccchhhhHHHH
Q 004360 320 RCFGRLTWPRISELII 335 (759)
Q Consensus 320 ~~~g~~i~~~ls~~lI 335 (759)
..+|..+..++...+=
T Consensus 269 ~~LG~~i~tE~~K~vK 284 (354)
T PF11988_consen 269 EKLGPLISTELTKFVK 284 (354)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHH
Confidence 8888877777765433
No 31
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=67.87 E-value=41 Score=35.09 Aligned_cols=33 Identities=21% Similarity=0.268 Sum_probs=24.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004360 93 IDKEVKEIIDEVSAKMKEARVKKELLELVRAIV 125 (759)
Q Consensus 93 ~~~~l~~~~~~~~~l~~el~~~~~~~~~l~~l~ 125 (759)
+.+.+..++.+...|.+|+...+.++.-++.++
T Consensus 138 feqrLnqAIErnAfLESELdEke~llesvqRLk 170 (333)
T KOG1853|consen 138 FEQRLNQAIERNAFLESELDEKEVLLESVQRLK 170 (333)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 445777788888888888888888775555554
No 32
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=67.61 E-value=20 Score=44.74 Aligned_cols=140 Identities=18% Similarity=0.237 Sum_probs=74.2
Q ss_pred chhhccccCCCC------------CCCCCCCcchHHHHHHhhhccchhhhHhHHHHHHhhhhchHHHHhhhhhhhhhhhh
Q 004360 9 NVRDLLSTHDLT------------DQTAPLTAPDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDE 76 (759)
Q Consensus 9 ~~~~~~~~~~~~------------~~~~~l~~~dl~~~i~~l~~~~~e~k~~v~~~i~~~y~~f~~~~~~~~~l~~~~~~ 76 (759)
-||+.|-..+++ +-..|++.+.+..+-+....++..++ .|-..|..-. .-..+|+.|.+..+.
T Consensus 1479 ~v~~Flt~~~adp~si~~vA~~vL~l~lp~tpeqi~~L~~~I~e~v~sL~-nVd~IL~~T~----~di~ra~~L~s~A~~ 1553 (1758)
T KOG0994|consen 1479 QVRDFLTQPDADPDSIEEVAEEVLALELPLTPEQIQQLTGEIQERVASLP-NVDAILSRTK----GDIARAENLQSEAER 1553 (1758)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcc-cHHHHHHhhh----hhHHHHHHHHHHHHH
Confidence 366666666652 22345555555554444444443332 1211111111 124455566666666
Q ss_pred hhhcHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH--hhcCchhhhHHHHHHHH
Q 004360 77 ISTDLSDILGLISYRPIDKEVKEIIDEVSAKMKEARVKKELLELVRAIVEIGERLKGVKEA--LRDGRLRFAAEELRELK 154 (759)
Q Consensus 77 l~~~l~~l~~~i~~~~~~~~l~~~~~~~~~l~~el~~~~~~~~~l~~l~~~~~~L~~~~~~--l~~~~~~~Aa~~L~~l~ 154 (759)
.++..+.++...++ |+.+..+... .+-+...++.+....++...+.|.++++. -.++-.-.|.+.+.+++
T Consensus 1554 a~~~A~~v~~~ae~------V~eaL~~Ad~--Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~ 1625 (1758)
T KOG0994|consen 1554 ARSRAEDVKGQAED------VVEALEEADV--AQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELE 1625 (1758)
T ss_pred HHhHHHHHHHHHHH------HHHHHHHHHH--HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666555433 4444444333 33344455555666666677777776654 34556677778888877
Q ss_pred hHhhccC
Q 004360 155 KDLRVGD 161 (759)
Q Consensus 155 ~~l~~~~ 161 (759)
..++.++
T Consensus 1626 ~~~e~lk 1632 (1758)
T KOG0994|consen 1626 TRMEELK 1632 (1758)
T ss_pred HHHHHHH
Confidence 7776664
No 33
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=67.40 E-value=1.1e+02 Score=37.37 Aligned_cols=125 Identities=18% Similarity=0.170 Sum_probs=63.8
Q ss_pred hHHHHHHhhhccchhhhHhHHHHHHhhhhchHHHHhhhhhhhhhhhhhhhcHHHHHhhhcCCCcchHHHHHHHHHH----
Q 004360 30 DLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVS---- 105 (759)
Q Consensus 30 dl~~~i~~l~~~~~e~k~~v~~~i~~~y~~f~~~~~~~~~l~~~~~~l~~~l~~l~~~i~~~~~~~~l~~~~~~~~---- 105 (759)
|.....++|.++...+++.-...|...-.....+++........++.+..-+..-...+. .+++.+..+.
T Consensus 2 dad~~~~~L~~eL~~le~~ni~~l~~s~~~v~~l~~~ld~a~~e~d~le~~l~~y~~~L~------~~~~di~~IE~qn~ 75 (701)
T PF09763_consen 2 DADAFEERLSKELSALEAANIHSLLESEKQVNSLMEYLDEALAECDELESWLSLYDVELN------SVRDDIEYIESQNN 75 (701)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHhhcC
Confidence 667788888888888887766555555444444444444444444444444444333332 2445555544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCch------hhhHHHHHHHHhHhhcc
Q 004360 106 AKMKEARVKKELLELVRAIVEIGERLKGVKEALRDGRL------RFAAEELRELKKDLRVG 160 (759)
Q Consensus 106 ~l~~el~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~~~------~~Aa~~L~~l~~~l~~~ 160 (759)
+|.-+.+-++.+...|+.|..--..=.+.-.++.++.+ ......+..|.+++..+
T Consensus 76 ~Lqvq~~N~k~L~~eL~~Ll~~l~i~~~~l~~L~~~~l~~~~~l~~~e~a~~~L~~Al~~i 136 (701)
T PF09763_consen 76 GLQVQSANQKLLLNELENLLDTLSIPEEHLEALRNASLSSPDGLEKIEEAAEALYKALKAI 136 (701)
T ss_pred chhhHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHHHhc
Confidence 33333333444444444443333322334444555554 23333455566666663
No 34
>KOG4182 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.19 E-value=1.3e+02 Score=34.56 Aligned_cols=107 Identities=14% Similarity=0.204 Sum_probs=68.0
Q ss_pred HHhhhhchHHHHhhhhhh----hhhhhhhhhcHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004360 53 IASHHQDFASLFSLCNDT----VSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMKEARVKKELLELVRAIVEIG 128 (759)
Q Consensus 53 i~~~y~~f~~~~~~~~~l----~~~~~~l~~~l~~l~~~i~~~~~~~~l~~~~~~~~~l~~el~~~~~~~~~l~~l~~~~ 128 (759)
+...-..-...|.++... ...+..++.++..+.-.+.. ++++--+-+..+..+..--+..++....|+.-..+-
T Consensus 58 lEEqSggal~rmPRaakd~~~Lq~Da~~Lq~kma~il~el~~--aegesadCiAaLaRldn~kQkleaA~esLQdaaGl~ 135 (828)
T KOG4182|consen 58 LEEQSGGALARMPRAAKDSAALQADAHRLQEKMAAILLELAA--AEGESADCIAALARLDNKKQKLEAAKESLQDAAGLG 135 (828)
T ss_pred HHHhccchHhhCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH--HhCChHHHHHHHHHhccHHHHHHHHHHHHHhhccHH
Confidence 333333444445554332 33344444444444433322 233334444445555544556667777888888889
Q ss_pred HhhHHHHHHhhcCchhhhHHHHHHHHhHhhccC
Q 004360 129 ERLKGVKEALRDGRLRFAAEELRELKKDLRVGD 161 (759)
Q Consensus 129 ~~L~~~~~~l~~~~~~~Aa~~L~~l~~~l~~~~ 161 (759)
+.+.+++.....|++..|++.|..++++|...+
T Consensus 136 nL~a~lED~Fa~gDL~~aadkLaalqkcL~A~~ 168 (828)
T KOG4182|consen 136 NLLAELEDGFARGDLKGAADKLAALQKCLHAQE 168 (828)
T ss_pred HHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999987664
No 35
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=63.93 E-value=1.1e+02 Score=30.95 Aligned_cols=61 Identities=13% Similarity=0.063 Sum_probs=44.4
Q ss_pred hHHHHHHhhhccchhhhHhHHHHHHhhhhc-hHHHHhhhhhhhhhhhhhhhcHHHHHhhhcC
Q 004360 30 DLRLLISRLEFHSLQIKSKVQSYIASHHQD-FASLFSLCNDTVSRTDEISTDLSDILGLISY 90 (759)
Q Consensus 30 dl~~~i~~l~~~~~e~k~~v~~~i~~~y~~-f~~~~~~~~~l~~~~~~l~~~l~~l~~~i~~ 90 (759)
.+.+.|..+..--..+||+.++.++.+|.+ ..|..+....+.....+--+.+..-.+.+++
T Consensus 28 ~l~~ai~~~~~~~~~LkGka~dsiK~y~~~vh~pll~~~~~~~~~~~~~l~~~~~~~~~vd~ 89 (204)
T PF04740_consen 28 SLQKAINQFISSESSLKGKAYDSIKNYFSEVHIPLLQGLILLLEEYQEALKFIKDFQSEVDS 89 (204)
T ss_pred HHHHHHHHHHcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcc
Confidence 456666776666667999999999999999 8888888777766555444555555555543
No 36
>KOG2347 consensus Sec5 subunit of exocyst complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.22 E-value=65 Score=39.41 Aligned_cols=159 Identities=12% Similarity=0.122 Sum_probs=112.4
Q ss_pred CCCcchHHHHHHhhhccchhhhHhHHHHHHhhhhchHHHHhhhhhhhhhhhhhhhcHHH-----HHhhhcCCCcchHHHH
Q 004360 25 PLTAPDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSD-----ILGLISYRPIDKEVKE 99 (759)
Q Consensus 25 ~l~~~dl~~~i~~l~~~~~e~k~~v~~~i~~~y~~f~~~~~~~~~l~~~~~~l~~~l~~-----l~~~i~~~~~~~~l~~ 99 (759)
-.+.+||+.-|..|++..+-=|..=..+++.++..|..-.....+++.+.+....+.+. |..+|++. .+.=.-
T Consensus 183 ~ts~edLk~~i~~lK~~~n~~~~~~~~lvK~n~~~fi~~~dtl~~i~~kLe~~e~~~~gs~t~~l~n~i~~~--~s~ad~ 260 (934)
T KOG2347|consen 183 DTSFEDLKAGILNLKRDLNGRKEGSLQLVKDNFDSFISCKDTLDNIHQKLERGEEDPHGSGTTKLENCIKNS--TSRADL 260 (934)
T ss_pred hccHHHHHHHHHHHHHhhcchhhhhHHHHhcchhHHHHHHHHHHHHHHHHhccccCccchHHHHHHHHHHHh--hhHHHH
Confidence 35788999999999998887777777799999999999999999999888875444332 33333331 111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCchhhhHHHHHHHHhHhhccCCCCCCchhHHHhHHHHHH
Q 004360 100 IIDEVSAKMKEARVKKELLELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVGDENASEPLVYGLLRKEWLV 179 (759)
Q Consensus 100 ~~~~~~~l~~el~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~~~~~Aa~~L~~l~~~l~~~~~~~~~~~I~~~L~~~~~~ 179 (759)
+-..+-.-+-..+..+.++.+++..+-+-..-..++...+.|+|..++..=++++...-.. +-.+++-+-+|+..
T Consensus 261 iF~~vl~Rk~~ADstRsvL~~lqRfkfLFnLp~~ier~i~kGeYd~vvndYekAKsl~~~t-----~v~~Fkk~l~Eve~ 335 (934)
T KOG2347|consen 261 IFEDVLERKDKADSTRSVLGVLQRFKFLFNLPSNIERSIKKGEYDTVVNDYEKAKSLFGKT-----EVNLFKKVLEEVEK 335 (934)
T ss_pred HHHHHHhcccccccHHHHHHHHHHHHHHHhcchhhhhHhhcCCceeeccchhhHHHhhccc-----ccHHHHHHHHHHHH
Confidence 1122223233445677889999999999999999999999999999999998888775444 44466666666666
Q ss_pred HHHHHHHHHHH
Q 004360 180 CFEEIQELLVK 190 (759)
Q Consensus 180 l~~~i~~~L~~ 190 (759)
-...+.+.|.+
T Consensus 336 ~m~~~k~~l~~ 346 (934)
T KOG2347|consen 336 RMQSFKETLYR 346 (934)
T ss_pred HHHHHHHHHHH
Confidence 66555555544
No 37
>PHA02562 46 endonuclease subunit; Provisional
Probab=62.83 E-value=1.3e+02 Score=35.26 Aligned_cols=51 Identities=8% Similarity=0.145 Sum_probs=25.0
Q ss_pred hHHHHhhhhhhhhhhhhhhhcHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHH
Q 004360 60 FASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMKEAR 112 (759)
Q Consensus 60 f~~~~~~~~~l~~~~~~l~~~l~~l~~~i~~~~~~~~l~~~~~~~~~l~~el~ 112 (759)
+......+.++..+.+.+..++.++.+.+++ ....+..+-.++..++++++
T Consensus 222 ~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~--~~~~L~~l~~~~~~~~~~l~ 272 (562)
T PHA02562 222 YDELVEEAKTIKAEIEELTDELLNLVMDIED--PSAALNKLNTAAAKIKSKIE 272 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccc--HHHHHHHHHHHHHHHHHHHH
Confidence 3344445556666666666666666555433 23334444444444444433
No 38
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=59.95 E-value=52 Score=36.16 Aligned_cols=19 Identities=11% Similarity=0.102 Sum_probs=8.0
Q ss_pred HHHHHHhhHHHHHHhhcCc
Q 004360 124 IVEIGERLKGVKEALRDGR 142 (759)
Q Consensus 124 l~~~~~~L~~~~~~l~~~~ 142 (759)
..++...+.+++.-+++.+
T Consensus 253 k~~l~~eI~e~~~~~~~~r 271 (325)
T PF08317_consen 253 KQELLAEIAEAEKIREECR 271 (325)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3344444444444444333
No 39
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=58.75 E-value=66 Score=37.33 Aligned_cols=102 Identities=18% Similarity=0.182 Sum_probs=66.5
Q ss_pred hHHHHhhhhhhhhhhhhhhhcHHHHHhhhcC-----CCcchHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
Q 004360 60 FASLFSLCNDTVSRTDEISTDLSDILGLISY-----RPIDKEVKEIIDEVSAKMKEARVK-----KELLELVRAIVEIGE 129 (759)
Q Consensus 60 f~~~~~~~~~l~~~~~~l~~~l~~l~~~i~~-----~~~~~~l~~~~~~~~~l~~el~~~-----~~~~~~l~~l~~~~~ 129 (759)
|...-..-.+..++...+-.+++.+...|.. ...+..+...-..+.+|++++..+ +.+-.+=+++..+..
T Consensus 99 F~kA~~~i~~ie~~l~~iE~~i~~il~~l~~Lv~sEekN~~~i~~~~ely~elr~~vl~n~~~~Ge~~~~lEk~Le~i~~ 178 (570)
T COG4477 99 FNKAKHEIDDIEQQLTLIEEDIEQILEDLNELVESEEKNSEEIDHVLELYEELRRDVLANRHQYGEAAPELEKKLENIEE 178 (570)
T ss_pred hHHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Confidence 3333333444444444444444444443322 012346666677788888888654 445556678899999
Q ss_pred hhHHHHHHhhcCchhhhHHHHHHHHhHhhccC
Q 004360 130 RLKGVKEALRDGRLRFAAEELRELKKDLRVGD 161 (759)
Q Consensus 130 ~L~~~~~~l~~~~~~~Aa~~L~~l~~~l~~~~ 161 (759)
.+.++...-..|+++.|...|..++.-+..+.
T Consensus 179 ~l~qf~~lt~~Gd~ieA~evl~~~ee~~~~L~ 210 (570)
T COG4477 179 ELSQFVELTSSGDYIEAREVLEEAEEHMIALR 210 (570)
T ss_pred HHHHHHHhccCCChhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999997776655553
No 40
>PRK02224 chromosome segregation protein; Provisional
Probab=58.69 E-value=1.2e+02 Score=38.09 Aligned_cols=41 Identities=17% Similarity=0.195 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhhHHHHHHhhcCchhhhHHHHHHHHhHhhcc
Q 004360 120 LVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVG 160 (759)
Q Consensus 120 ~l~~l~~~~~~L~~~~~~l~~~~~~~Aa~~L~~l~~~l~~~ 160 (759)
+-+.+.++..++++.+..++..++......++.+...+..+
T Consensus 625 ~~~~l~~~r~~i~~l~~~~~~~~~e~l~~~~~~~~~~~~~l 665 (880)
T PRK02224 625 RRERLAEKRERKRELEAEFDEARIEEAREDKERAEEYLEQV 665 (880)
T ss_pred HHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 33556666777777666666666666666666666555555
No 41
>KOG0412 consensus Golgi transport complex COD1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.33 E-value=20 Score=42.68 Aligned_cols=114 Identities=19% Similarity=0.231 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhhcCchhhhHHHHHHHHhH---hhccC---CCCCCchh---HHHhHHHHHHHHHH
Q 004360 113 VKKELLELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKD---LRVGD---ENASEPLV---YGLLRKEWLVCFEE 183 (759)
Q Consensus 113 ~~~~~~~~l~~l~~~~~~L~~~~~~l~~~~~~~Aa~~L~~l~~~---l~~~~---~~~~~~~I---~~~L~~~~~~l~~~ 183 (759)
.-.+-++.+..++.+..++.-++.|+...+|..||....+.... +-... ....++-| +..|++- ..+
T Consensus 116 Rv~~clq~v~dvrdlk~C~~gv~~Al~seDyE~AA~~IhRflslD~~~i~~~~~~~~~~ts~i~~~~~~L~~a----~e~ 191 (773)
T KOG0412|consen 116 RVNECLQRVDDVRDLKNCIEGVDTALESEDYEKAATHIHRFLSLDQALIESRFAKQVVPTSEISDPYETLKEA----KER 191 (773)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHhhhhhhccCCchhhhhHHHHHHHH----HHH
Confidence 34455678899999999999999999999999999988754322 21111 01012222 3333333 344
Q ss_pred HHHHHHHHHHhhccccccCCeEEEEEEEeecCcccchHHHHHHHHHHHHhhhhhhhhhhhhhhh
Q 004360 184 IQELLVKFVESAVRFEKESNRVLVKYQLTVDGLDGIELRTVLEAMEVVGILDYGLAKVADLKIK 247 (759)
Q Consensus 184 i~~~L~~~~~~~v~~~~~~~~i~v~~~~~~~~~~~~~L~~vl~AL~~lg~l~~~l~~l~~~L~~ 247 (759)
+...+++.|..+++ .+| -.++.-+..-+..+|+-+..|+.+|..+-+
T Consensus 192 L~~l~~~~f~eA~r---------------~~D--~~ei~RffKmFPliG~~~eGL~~ys~ylc~ 238 (773)
T KOG0412|consen 192 LSKLFKERFTEAVR---------------KQD--LKEITRFFKMFPLIGEEDEGLQLYSVYLCQ 238 (773)
T ss_pred HHHHHHHHHHHHHh---------------ccc--HHHHHHHHHHccccCCchhhHHHHHHHHHH
Confidence 44445555554433 111 234455555555566666666666665433
No 42
>PF07426 Dynactin_p22: Dynactin subunit p22; InterPro: IPR009991 This family contains p22, the smallest subunit of dynactin, a complex that binds to cytoplasmic dynein and is a required activator for cytoplasmic dynein-mediated vesicular transport. Dynactin localises to the cleavage furrow and to the midbodies of dividing cells, suggesting that it may function in cytokinesis [].
Probab=57.59 E-value=1.1e+02 Score=30.69 Aligned_cols=30 Identities=10% Similarity=0.210 Sum_probs=14.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 004360 170 YGLLRKEWLVCFEEIQELLVKFVESAVRFE 199 (759)
Q Consensus 170 ~~~L~~~~~~l~~~i~~~L~~~~~~~v~~~ 199 (759)
...|.++...|...........=+.+|.||
T Consensus 142 ~~~ls~~~~~Ll~~YN~ii~~lSk~Fv~wD 171 (174)
T PF07426_consen 142 SEELSEEVQELLQQYNKIILLLSKQFVQWD 171 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555444444444444455665
No 43
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=55.99 E-value=1.3e+02 Score=33.67 Aligned_cols=122 Identities=13% Similarity=0.264 Sum_probs=75.7
Q ss_pred hhchHHHHhhhhhhhhhhhhhhhcHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 004360 57 HQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMKEARVKKELLELVRAIVEIGERLKGVKE 136 (759)
Q Consensus 57 y~~f~~~~~~~~~l~~~~~~l~~~l~~l~~~i~~~~~~~~l~~~~~~~~~l~~el~~~~~~~~~l~~l~~~~~~L~~~~~ 136 (759)
..++-.....+......+.+...+...-+.+| ..++....+++.. ||---|+++-.++++.+.....|.+++.
T Consensus 215 ~kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl-----~~~i~~~lekI~s--REk~iN~qle~l~~eYr~~~~~ls~~~~ 287 (359)
T PF10498_consen 215 AKDWRSHLEQMKQHKKSIESALPETKSQLDKL-----QQDISKTLEKIES--REKYINNQLEPLIQEYRSAQDELSEVQE 287 (359)
T ss_pred cchHHHHHHHHHHHHHHHHHhhhHHHHHHHHH-----HHHHHHHHHHHHH--HHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666666666655555555554 3366777777776 5556677777777777777777777776
Q ss_pred HhhcCc---------hhhhHHHHHHHHhHhhccC-CCCCCchhHHHhHHHHHHHHHHHHH
Q 004360 137 ALRDGR---------LRFAAEELRELKKDLRVGD-ENASEPLVYGLLRKEWLVCFEEIQE 186 (759)
Q Consensus 137 ~l~~~~---------~~~Aa~~L~~l~~~l~~~~-~~~~~~~I~~~L~~~~~~l~~~i~~ 186 (759)
...+.. +-.--+.|++++..++.-+ .--..+.+++ ++.-...|+.+|.+
T Consensus 288 ~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv~-IKqAl~kLk~EI~q 346 (359)
T PF10498_consen 288 KYKQASEGVSERTRELAEISEELEQVKQEMEERGSSMTDGSPLVK-IKQALTKLKQEIKQ 346 (359)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHH-HHHHHHHHHHHHHH
Confidence 543322 2233344555666664443 2224555666 78888888877754
No 44
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=54.57 E-value=1.7e+02 Score=34.76 Aligned_cols=66 Identities=23% Similarity=0.217 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhhHHHHHHhhcCchhhhHHHHHHHHhHhhccC
Q 004360 96 EVKEIIDEVSAKMKEAR-----VKKELLELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVGD 161 (759)
Q Consensus 96 ~l~~~~~~~~~l~~el~-----~~~~~~~~l~~l~~~~~~L~~~~~~l~~~~~~~Aa~~L~~l~~~l~~~~ 161 (759)
.+...-..+..+++.+- |-.++-.+=++|..+...+.++.+.-.+|++..|-+.+.+++..+..+.
T Consensus 141 ~v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~l~~~e~~f~~f~~l~~~Gd~~~A~e~l~~l~~~~~~l~ 211 (569)
T PRK04778 141 EVEQLKDLYRELRKSLLANRFSFGPALDELEKQLENLEEEFSQFVELTESGDYVEAREILDQLEEELAALE 211 (569)
T ss_pred HHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 44555555666666663 4455556667899999999999999999999999999999888887775
No 45
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=53.67 E-value=1.2e+02 Score=36.70 Aligned_cols=94 Identities=18% Similarity=0.270 Sum_probs=54.8
Q ss_pred hhhhhhhhhhhhhhhcHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhHHHHHHh-----
Q 004360 65 SLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMKEARVKKEL-LELVRAIVEIGERLKGVKEAL----- 138 (759)
Q Consensus 65 ~~~~~l~~~~~~l~~~l~~l~~~i~~~~~~~~l~~~~~~~~~l~~el~~~~~~-~~~l~~l~~~~~~L~~~~~~l----- 138 (759)
.....+..+...+..+++.+...|...|...++...-.++..+++++...+.- -...+++..+.+.+.+.+..+
T Consensus 391 ~~~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 470 (650)
T TIGR03185 391 DAKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEKTK 470 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677778888888899999998887666567777777777666666543322 233334444444444443322
Q ss_pred ---hcCchhhhHHHHHHHHhHhh
Q 004360 139 ---RDGRLRFAAEELRELKKDLR 158 (759)
Q Consensus 139 ---~~~~~~~Aa~~L~~l~~~l~ 158 (759)
....+..++...+++...|+
T Consensus 471 ~~~~~~~~~~~~~~~~~~~~~l~ 493 (650)
T TIGR03185 471 QKINAFELERAITIADKAKKTLK 493 (650)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHH
Confidence 22233444444445555544
No 46
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=51.29 E-value=2.1e+02 Score=34.47 Aligned_cols=101 Identities=15% Similarity=0.208 Sum_probs=59.8
Q ss_pred hchHHHHhhhhhhhhhhhhhhhcHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 004360 58 QDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMKEARVKKELLELVRAIVEIGERLKGVKEA 137 (759)
Q Consensus 58 ~~f~~~~~~~~~l~~~~~~l~~~l~~l~~~i~~~~~~~~l~~~~~~~~~l~~el~~~~~~~~~l~~l~~~~~~L~~~~~~ 137 (759)
.+|.+..+.-..+.+.++++.+.-+.+..++.. ...+-++.+.+...|++|.+..+.-..++....+=-+.=.+-..+
T Consensus 38 ~~f~~v~~~l~~~~~~v~~l~~~~~~~~~~l~~--~~~~t~~ll~~~~~L~~~~~~~~~k~~ll~~f~~~f~Ls~~E~~~ 115 (618)
T PF06419_consen 38 KEFSPVNRQLKRLQSDVDKLNSSCDQMQDRLSA--AKSETSDLLEEASELREQKEELELKKKLLDAFLERFTLSEEEEDA 115 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 456666666666777777777777777777655 355666777777777666655444444444443322222223334
Q ss_pred hhcC------chhhhHHHHHHHHhHhhcc
Q 004360 138 LRDG------RLRFAAEELRELKKDLRVG 160 (759)
Q Consensus 138 l~~~------~~~~Aa~~L~~l~~~l~~~ 160 (759)
+..| +|=+|+..+++++..-+.+
T Consensus 116 L~~~~~~v~~~FF~~L~r~~~I~~~c~~L 144 (618)
T PF06419_consen 116 LTSGEEPVDDEFFDALDRVQKIHEDCKIL 144 (618)
T ss_pred HhCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 5555 3557777777776665544
No 47
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=49.86 E-value=69 Score=38.02 Aligned_cols=91 Identities=20% Similarity=0.203 Sum_probs=59.9
Q ss_pred chHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhHHHHHHhhcCchhhhHHHHHHHHhHhhccC-CCCCCchh
Q 004360 94 DKEVKEIIDEVSAKMKEARVK---KELLELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVGD-ENASEPLV 169 (759)
Q Consensus 94 ~~~l~~~~~~~~~l~~el~~~---~~~~~~l~~l~~~~~~L~~~~~~l~~~~~~~Aa~~L~~l~~~l~~~~-~~~~~~~I 169 (759)
+..+.+..+++...-+++... =....+-+.+..+.+.+.+....+.++++..|-..++++...++.+- ...++..+
T Consensus 221 ~~~~P~ql~eL~~gy~~m~~~gy~l~~~~i~~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd~le~E~~A 300 (560)
T PF06160_consen 221 QKEFPDQLEELKEGYREMEEEGYYLEHLDIEEEIEQIEEQLEEALALLKNLELDEVEEENEEIEERIDQLYDILEKEVEA 300 (560)
T ss_pred HHHhHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555444444322 12246778999999999999999999999999999999999888774 22234444
Q ss_pred HHHhHHHHHHHHHHH
Q 004360 170 YGLLRKEWLVCFEEI 184 (759)
Q Consensus 170 ~~~L~~~~~~l~~~i 184 (759)
.+-+.+.+..+...+
T Consensus 301 k~~V~~~~~~l~~~l 315 (560)
T PF06160_consen 301 KKYVEKNLKELYEYL 315 (560)
T ss_pred HHHHHHhHHHHHHHH
Confidence 444444444444333
No 48
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=49.23 E-value=61 Score=31.46 Aligned_cols=28 Identities=25% Similarity=0.264 Sum_probs=17.1
Q ss_pred hHHHHHHhhhccchhhhHhHHHHHHhhh
Q 004360 30 DLRLLISRLEFHSLQIKSKVQSYIASHH 57 (759)
Q Consensus 30 dl~~~i~~l~~~~~e~k~~v~~~i~~~y 57 (759)
.|...+.++..++++++.++..++.+.-
T Consensus 12 ~L~~~~~~le~~i~~~~~~~k~~~~~~~ 39 (171)
T PF03357_consen 12 RLEKQIKRLEKKIKKLEKKAKKAIKKGN 39 (171)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHCTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4566666666666666666666665544
No 49
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=48.88 E-value=1e+02 Score=28.10 Aligned_cols=52 Identities=17% Similarity=0.157 Sum_probs=38.8
Q ss_pred hhhhhhhhhhhhhcHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 004360 67 CNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMKEARVKKELL 118 (759)
Q Consensus 67 ~~~l~~~~~~l~~~l~~l~~~i~~~~~~~~l~~~~~~~~~l~~el~~~~~~~ 118 (759)
...+..+++....-++.+...+++-|...++++.--++.+++.+++...+-+
T Consensus 37 ~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l 88 (106)
T PF10805_consen 37 IEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARL 88 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4445556666677788888888888888888888888888888877665544
No 50
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.88 E-value=3.6e+02 Score=32.93 Aligned_cols=72 Identities=11% Similarity=0.195 Sum_probs=41.8
Q ss_pred HHHHHhhhccchhh---------hHhHHHHHHhhhhc---hHHHHhhhhhhhhhhhhhhhcHHHHHhhhcCCCcchHHHH
Q 004360 32 RLLISRLEFHSLQI---------KSKVQSYIASHHQD---FASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKE 99 (759)
Q Consensus 32 ~~~i~~l~~~~~e~---------k~~v~~~i~~~y~~---f~~~~~~~~~l~~~~~~l~~~l~~l~~~i~~~~~~~~l~~ 99 (759)
++.|++.+.+.+|+ |.++.+|++++-.+ ....-..-..+....+.|..+++.|..+|.+ +..++..
T Consensus 392 kkeie~rEaar~ElEkqRqlewErar~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~D--vr~~~tt 469 (1118)
T KOG1029|consen 392 KKEIERREAAREELEKQRQLEWERARRQEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQD--VRVDITT 469 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh--heeccch
Confidence 44555555555554 56788888877654 2223334455666677777777777777655 4444443
Q ss_pred HHHHHH
Q 004360 100 IIDEVS 105 (759)
Q Consensus 100 ~~~~~~ 105 (759)
.-+++.
T Consensus 470 ~kt~ie 475 (1118)
T KOG1029|consen 470 QKTEIE 475 (1118)
T ss_pred HHHHHH
Confidence 333333
No 51
>KOG1854 consensus Mitochondrial inner membrane protein (mitofilin) [Cell wall/membrane/envelope biogenesis]
Probab=45.65 E-value=2.5e+02 Score=33.54 Aligned_cols=41 Identities=22% Similarity=0.340 Sum_probs=34.2
Q ss_pred hhccccCCCCCCCCCCCcchHHHHHHhhhccchhhhHhHHH
Q 004360 11 RDLLSTHDLTDQTAPLTAPDLRLLISRLEFHSLQIKSKVQS 51 (759)
Q Consensus 11 ~~~~~~~~~~~~~~~l~~~dl~~~i~~l~~~~~e~k~~v~~ 51 (759)
++.+.+-+..|....|+++||++.|--.+.|+.++..++.+
T Consensus 296 ~si~p~l~~~d~~~~L~~~dln~liahah~rvdql~~~l~d 336 (657)
T KOG1854|consen 296 ESILPGLSLADKEENLSEDDLNKLIAHAHTRVDQLQKELED 336 (657)
T ss_pred HHhcCCCchhhhhhhccHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666678889999999999999999999999888776
No 52
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=44.28 E-value=1.7e+02 Score=31.00 Aligned_cols=25 Identities=12% Similarity=0.369 Sum_probs=17.5
Q ss_pred hHHHHHHhhhccchhhhHhHHHHHH
Q 004360 30 DLRLLISRLEFHSLQIKSKVQSYIA 54 (759)
Q Consensus 30 dl~~~i~~l~~~~~e~k~~v~~~i~ 54 (759)
+++..+.++....++++.+|-+.+.
T Consensus 24 ~~~~~l~~~~~~~~~l~~~i~~~l~ 48 (302)
T PF10186_consen 24 ELRSELQQLKEENEELRRRIEEILE 48 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777777777777666
No 53
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=43.76 E-value=5.2e+02 Score=30.78 Aligned_cols=19 Identities=16% Similarity=0.289 Sum_probs=8.1
Q ss_pred HHHHHHHhhHHHHHHhhcC
Q 004360 123 AIVEIGERLKGVKEALRDG 141 (759)
Q Consensus 123 ~l~~~~~~L~~~~~~l~~~ 141 (759)
.+..+...|..+...+...
T Consensus 419 kL~~~~~~L~~ikr~l~k~ 437 (569)
T PRK04778 419 KLERYRNKLHEIKRYLEKS 437 (569)
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 3344444444444444333
No 54
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=43.17 E-value=2e+02 Score=36.59 Aligned_cols=124 Identities=17% Similarity=0.266 Sum_probs=79.6
Q ss_pred hHHHHHHhhhccchhh-----h-HhHHHHHHhhhhc-----hHHHHhhhhhhhhhhhhhhhcHHHHHhhhcCCCcchHHH
Q 004360 30 DLRLLISRLEFHSLQI-----K-SKVQSYIASHHQD-----FASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVK 98 (759)
Q Consensus 30 dl~~~i~~l~~~~~e~-----k-~~v~~~i~~~y~~-----f~~~~~~~~~l~~~~~~l~~~l~~l~~~i~~~~~~~~l~ 98 (759)
++++.|+++.++++++ | .+|. .|...+.. .-.--....++..|.+.+..++..+...|++ ..+.+.
T Consensus 862 ~~~~~ie~l~kE~e~~qe~~~Kk~~i~-~lq~~i~~i~~e~~q~qk~kv~~~~~~~~~l~~~i~k~~~~i~~--s~~~i~ 938 (1293)
T KOG0996|consen 862 ELEEQIEELKKEVEELQEKAAKKARIK-ELQNKIDEIGGEKVQAQKDKVEKINEQLDKLEADIAKLTVAIKT--SDRNIA 938 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHhhchhhHHhHHHHHHHHHHHHHHHHHHHHhHHHHhc--CcccHH
Confidence 4566788888888888 4 3333 22222222 2222344677788888888888888888887 355677
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhHHHHHHhhcCchhhhHHHHHHHHhHhhccC
Q 004360 99 EIIDEVSAKMKEARVKKELL-ELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVGD 161 (759)
Q Consensus 99 ~~~~~~~~l~~el~~~~~~~-~~l~~l~~~~~~L~~~~~~l~~~~~~~Aa~~L~~l~~~l~~~~ 161 (759)
.+-..++.+.+++...+.-+ .+-+.++.......+. +++|-.+.+.+.+++..+..+.
T Consensus 939 k~q~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~-----~~~~~e~~~~~~E~k~~~~~~k 997 (1293)
T KOG0996|consen 939 KAQKKLSELEREIEDTEKELDDLTEELKGLEEKAAEL-----EKEYKEAEESLKEIKKELRDLK 997 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777778887655533 3344555555555553 3477777777777777765553
No 55
>PRK10884 SH3 domain-containing protein; Provisional
Probab=41.20 E-value=93 Score=31.95 Aligned_cols=25 Identities=24% Similarity=0.329 Sum_probs=19.1
Q ss_pred chHHHHHHhhhccchhhhHhHHHHH
Q 004360 29 PDLRLLISRLEFHSLQIKSKVQSYI 53 (759)
Q Consensus 29 ~dl~~~i~~l~~~~~e~k~~v~~~i 53 (759)
|-++.++.+++.++.+++.+.-+.-
T Consensus 89 p~~~~rlp~le~el~~l~~~l~~~~ 113 (206)
T PRK10884 89 PSLRTRVPDLENQVKTLTDKLNNID 113 (206)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888888887777633
No 56
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=40.83 E-value=1.9e+02 Score=34.67 Aligned_cols=42 Identities=17% Similarity=0.198 Sum_probs=23.0
Q ss_pred hhHHHHHHHHhHhhccCCCCCCchhHHHhHHHHHHHHHHHHHHHHHHH
Q 004360 145 FAAEELRELKKDLRVGDENASEPLVYGLLRKEWLVCFEEIQELLVKFV 192 (759)
Q Consensus 145 ~Aa~~L~~l~~~l~~~~~~~~~~~I~~~L~~~~~~l~~~i~~~L~~~~ 192 (759)
+|=..+++|+..++.. ..++.. |..+|..-+..+.+.++..=
T Consensus 391 d~e~ni~kL~~~v~~s-----~~rl~~-L~~qWe~~R~pL~~e~r~lk 432 (594)
T PF05667_consen 391 DAEENIAKLQALVEAS-----EQRLVE-LAQQWEKHRAPLIEEYRRLK 432 (594)
T ss_pred CcHHHHHHHHHHHHHH-----HHHHHH-HHHHHHHHHhHHHHHHHHHH
Confidence 3444445555555444 233444 77777777776666554433
No 57
>PRK10869 recombination and repair protein; Provisional
Probab=40.77 E-value=4.2e+02 Score=31.43 Aligned_cols=131 Identities=15% Similarity=0.140 Sum_probs=60.2
Q ss_pred CCCCCCCcchHHHHHHhhhccchhhhHhHHHHHHhhhh-c---hHHHHhhhhhhhhhhhhhhhcHHHHHhhhcCCCcchH
Q 004360 21 DQTAPLTAPDLRLLISRLEFHSLQIKSKVQSYIASHHQ-D---FASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKE 96 (759)
Q Consensus 21 ~~~~~l~~~dl~~~i~~l~~~~~e~k~~v~~~i~~~y~-~---f~~~~~~~~~l~~~~~~l~~~l~~l~~~i~~~~~~~~ 96 (759)
+| .|-+-+.|.....+|.+ .++++..+..+..-=+. + -......+.....++..+...+..+...+++ ....
T Consensus 201 ~l-~~gE~eeL~~e~~~L~n-~e~i~~~~~~~~~~L~~~~~~~~~~~l~~~~~~l~~~~~~d~~~~~~~~~l~~--~~~~ 276 (553)
T PRK10869 201 AP-QPGEFEQIDEEYKRLAN-SGQLLTTSQNALQLLADGEEVNILSQLYSAKQLLSELIGMDSKLSGVLDMLEE--ALIQ 276 (553)
T ss_pred CC-CCCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHhhhCHhHHHHHHHHHH--HHHH
Confidence 44 46666778777777764 34444444444333222 1 1112222223333333333344444444433 2334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcC--chhhhHHHHHHHHhHhhccC
Q 004360 97 VKEIIDEVSAKMKEARVKKELLELVRAIVEIGERLKGVKEALRDG--RLRFAAEELRELKKDLRVGD 161 (759)
Q Consensus 97 l~~~~~~~~~l~~el~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~--~~~~Aa~~L~~l~~~l~~~~ 161 (759)
+.++..++......+.+.. +.+.++.++|..++.....+ .+.+.+...++++..++.+.
T Consensus 277 l~~~~~~l~~~~~~~~~dp------~~l~~ie~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L~ 337 (553)
T PRK10869 277 IQEASDELRHYLDRLDLDP------NRLAELEQRLSKQISLARKHHVSPEELPQHHQQLLEEQQQLD 337 (553)
T ss_pred HHHHHHHHHHHHhhcCCCH------HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh
Confidence 4444444433333333222 23455556666665554332 24555666666666666554
No 58
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=40.74 E-value=2.5e+02 Score=28.12 Aligned_cols=135 Identities=14% Similarity=0.154 Sum_probs=81.8
Q ss_pred HHHHHHhhhccchhhhHhHHHHHHhhhhchHHHHhhhhhhhhhhhhhhhcHHHHHhhhcCCCcchHHHHHHHHHHHHHHH
Q 004360 31 LRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMKE 110 (759)
Q Consensus 31 l~~~i~~l~~~~~e~k~~v~~~i~~~y~~f~~~~~~~~~l~~~~~~l~~~l~~l~~~i~~~~~~~~l~~~~~~~~~l~~e 110 (759)
+..+...+...-...|+....|+..-|+......+..-+=.++..+.-..|..+.. +.+.......+..|..+
T Consensus 46 ~~~l~~~l~~~q~~ak~ha~~w~d~~~P~ii~~~~~I~~Y~~~f~syY~~L~~~id-------~~~~~~~~~~i~~L~~~ 118 (184)
T PF05791_consen 46 LSDLQKDLVQHQKTAKEHAKEWLDTIKPQIIDLNQDIINYNTTFQSYYDTLVEAID-------QKDKEDLKEIIEDLQDQ 118 (184)
T ss_dssp -TTHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HT-HHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------cccHHHHHHHHHHHHHH
Confidence 45556677777788888999999988888888777766666677666665555542 22344455555666677
Q ss_pred HHHHHH-HHHHHHHHHHHHHhhHHHHHHhhcCchhhhHHHHHHHHhHhhccCCCCCCchhHHHhHHHHHHHHHHHHH
Q 004360 111 ARVKKE-LLELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVGDENASEPLVYGLLRKEWLVCFEEIQE 186 (759)
Q Consensus 111 l~~~~~-~~~~l~~l~~~~~~L~~~~~~l~~~~~~~Aa~~L~~l~~~l~~~~~~~~~~~I~~~L~~~~~~l~~~i~~ 186 (759)
+..++. +-.+++.|..+...+.+-...+...- .++...+...+ -.+..|+.+...+++.|..
T Consensus 119 i~~~q~~~~~~i~~L~~f~~~l~~D~~~l~~~~--------~~l~~~l~~~~------g~I~~L~~~I~~~~~~I~~ 181 (184)
T PF05791_consen 119 IQKNQDKVQALINELNDFKDKLQKDSRNLKTDV--------DELQSILAGEN------GDIPQLQKQIENLNEEIKK 181 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHTT--------HHHHHHHHHHHTGGG-G
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--------HHHHHHHhccc------CCHHHHHHHHHHHHHHHHh
Confidence 766554 34677778888777777666554332 23333433332 1334466666666655543
No 59
>PF07373 CAMP_factor: CAMP factor (Cfa); InterPro: IPR010860 This family consists of several bacterial CAMP factor (Cfa) proteins, which seem to be specific to Streptococcus species. The CAMP reaction is a synergistic lysis of erythrocytes by the interaction of an extracellular protein (CAMP factor) produced by some streptococcal species with the Staphylococcus aureus sphingomyelinase C (beta-toxin) [].
Probab=39.30 E-value=4.7e+02 Score=27.29 Aligned_cols=57 Identities=11% Similarity=0.134 Sum_probs=35.8
Q ss_pred CCCCCCCCCcchHHHHHHhhhccchhhhHhHHHHHHhhhh-chHHHHhhhhhhhhhhh
Q 004360 19 LTDQTAPLTAPDLRLLISRLEFHSLQIKSKVQSYIASHHQ-DFASLFSLCNDTVSRTD 75 (759)
Q Consensus 19 ~~~~~~~l~~~dl~~~i~~l~~~~~e~k~~v~~~i~~~y~-~f~~~~~~~~~l~~~~~ 75 (759)
...|...++..+-+..++.+..++.++++--.+.=...|. ++..++..+.++....+
T Consensus 5 ~~~~~~~~~~~~a~~~~~~vn~~i~~L~~~q~~v~~~~~~~~I~~ll~ta~~l~~~l~ 62 (228)
T PF07373_consen 5 TSQPATNLSTSEAQQELQDVNARIAQLQSIQKSVKGSDYEKEINKLLKTAFELKQSLE 62 (228)
T ss_pred cccccccccHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHH
Confidence 3466888999999999999999999888753333333343 23333444444443333
No 60
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=38.64 E-value=4e+02 Score=27.92 Aligned_cols=9 Identities=11% Similarity=0.080 Sum_probs=4.2
Q ss_pred CchhHHHhH
Q 004360 166 EPLVYGLLR 174 (759)
Q Consensus 166 ~~~I~~~L~ 174 (759)
+-.|+.+|.
T Consensus 224 Dd~Iv~aln 232 (247)
T PF06705_consen 224 DDDIVQALN 232 (247)
T ss_pred hhHHHHHHH
Confidence 444555444
No 61
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=38.51 E-value=5e+02 Score=27.41 Aligned_cols=108 Identities=10% Similarity=0.137 Sum_probs=60.8
Q ss_pred hHHHHHHhhhccchhhhHhHHHHHH---hhhhchHHHHhhhhhhhhhhhhhhhcHHHHHhhhcCC------CcchHHHHH
Q 004360 30 DLRLLISRLEFHSLQIKSKVQSYIA---SHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYR------PIDKEVKEI 100 (759)
Q Consensus 30 dl~~~i~~l~~~~~e~k~~v~~~i~---~~y~~f~~~~~~~~~l~~~~~~l~~~l~~l~~~i~~~------~~~~~l~~~ 100 (759)
.+...++.|...++.++.++..+.. +-+.+.-...++|.++...+..+...|..+...+..- .-..++...
T Consensus 49 ~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~ 128 (264)
T PF06008_consen 49 PLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNENGDQLPSEDLQRA 128 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHH
Confidence 3444477777777777776654433 3344566667788888888888888888777776331 112355555
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhHHHHHH
Q 004360 101 IDEVSAKMKEAR---VKKELLELVRAIVEIGERLKGVKEA 137 (759)
Q Consensus 101 ~~~~~~l~~el~---~~~~~~~~l~~l~~~~~~L~~~~~~ 137 (759)
..++...-++++ +....-.+=.++.++...|..++..
T Consensus 129 l~ea~~mL~emr~r~f~~~~~~Ae~El~~A~~LL~~v~~~ 168 (264)
T PF06008_consen 129 LAEAQRMLEEMRKRDFTPQRQNAEDELKEAEDLLSRVQKW 168 (264)
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 555554444442 3333333334444444444444443
No 62
>PRK11637 AmiB activator; Provisional
Probab=37.70 E-value=5.9e+02 Score=28.97 Aligned_cols=23 Identities=13% Similarity=0.110 Sum_probs=17.4
Q ss_pred chHHHHHHhhhccchhhhHhHHH
Q 004360 29 PDLRLLISRLEFHSLQIKSKVQS 51 (759)
Q Consensus 29 ~dl~~~i~~l~~~~~e~k~~v~~ 51 (759)
.++...++.+..++.+++.++.+
T Consensus 43 ~~~~~~l~~l~~qi~~~~~~i~~ 65 (428)
T PRK11637 43 SDNRDQLKSIQQDIAAKEKSVRQ 65 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Confidence 57788888888888777777764
No 63
>PF05082 Rop-like: Rop-like; InterPro: IPR007774 This family contains several uncharacterised bacterial proteins. These proteins are found in nitrogen fixation operons, so are likely to play a role in this process.; PDB: 3CSX_A 2JS5_B.
Probab=37.64 E-value=80 Score=26.37 Aligned_cols=55 Identities=15% Similarity=0.247 Sum_probs=37.4
Q ss_pred chHHHHHHhhhccchhhhHhHHHHHHh---hhhchHHHHhhhhhhhhhhhhhhhcHHH
Q 004360 29 PDLRLLISRLEFHSLQIKSKVQSYIAS---HHQDFASLFSLCNDTVSRTDEISTDLSD 83 (759)
Q Consensus 29 ~dl~~~i~~l~~~~~e~k~~v~~~i~~---~y~~f~~~~~~~~~l~~~~~~l~~~l~~ 83 (759)
++|.+.|.||.++.-+.|+++|+-... .|.+.....+.+=+.....++.+..+..
T Consensus 5 ~eLk~evkKL~~~A~~~kmdLHDLaEdLP~~w~~i~~vA~~ty~a~~~l~~ak~~L~~ 62 (66)
T PF05082_consen 5 EELKKEVKKLNRKATQAKMDLHDLAEDLPTNWEEIPEVAQKTYDAYAELDEAKAELKA 62 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999988775 3344444445444445555554444443
No 64
>KOG2148 consensus Exocyst protein Sec3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.57 E-value=2.8e+02 Score=33.22 Aligned_cols=78 Identities=19% Similarity=0.049 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhh---HHHHHHhhcCchhhh---HHHHHHHHhHhhccC-----CCCCCchhHHHhHHHHHHHHHHH----
Q 004360 120 LVRAIVEIGERL---KGVKEALRDGRLRFA---AEELRELKKDLRVGD-----ENASEPLVYGLLRKEWLVCFEEI---- 184 (759)
Q Consensus 120 ~l~~l~~~~~~L---~~~~~~l~~~~~~~A---a~~L~~l~~~l~~~~-----~~~~~~~I~~~L~~~~~~l~~~i---- 184 (759)
++++|..+-.+| ++.-+++.+|++..| ++.+..+-+++.+.- ++.-....++.=+.+...+++.+
T Consensus 275 L~eEl~kvin~L~vp~shi~aL~egdf~~a~~~ieact~aA~al~q~~~~~ldp~~l~m~Avkdqr~eleklk~~Fvrrl 354 (867)
T KOG2148|consen 275 LIEELDKVINRLDVPSSHIAALTEGDFDEADQGIEACTWAAKALRQLMNPNLDPIYLNMRAVKDQRAELEKLKATFVRRL 354 (867)
T ss_pred HHHHHHHHHHhccCcHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555444444 456778999998755 344444445554432 22233344444455555555444
Q ss_pred HHHHHHHHHhhcc
Q 004360 185 QELLVKFVESAVR 197 (759)
Q Consensus 185 ~~~L~~~~~~~v~ 197 (759)
...|++.|..+..
T Consensus 355 ssfLnnlF~~l~d 367 (867)
T KOG2148|consen 355 SSFLNNLFASLGD 367 (867)
T ss_pred HHHHHHHHHHhcc
Confidence 5667777776655
No 65
>PF14966 DNA_repr_REX1B: DNA repair REX1-B
Probab=37.46 E-value=1.6e+02 Score=26.53 Aligned_cols=76 Identities=14% Similarity=0.201 Sum_probs=55.3
Q ss_pred hhhhHhHHHHHHhhhhchHHH------HhhhhhhhhhhhhhhhcHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 004360 43 LQIKSKVQSYIASHHQDFASL------FSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMKEARVKKE 116 (759)
Q Consensus 43 ~e~k~~v~~~i~~~y~~f~~~------~~~~~~l~~~~~~l~~~l~~l~~~i~~~~~~~~l~~~~~~~~~l~~el~~~~~ 116 (759)
-+-+...|...+.-+..|..+ -+.|..+.....+++.++-++.+.+.+...+.++-..+.+++...++--..++
T Consensus 12 Qe~Ra~~Y~~~~~gf~~yl~~~~~~~y~~~~~~iT~~f~~~S~ei~~ie~~L~~~~~~~~la~~i~~lQ~~Ek~KL~lT~ 91 (97)
T PF14966_consen 12 QERRAQLYNRFEEGFKKYLRSGPEEAYRQLCHEITQEFSAISKEILAIEAELRDEHERPDLAELIRELQEQEKEKLELTA 91 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777777744 44588888999999999999999997545667888888888776655444444
Q ss_pred HH
Q 004360 117 LL 118 (759)
Q Consensus 117 ~~ 118 (759)
.+
T Consensus 92 ~l 93 (97)
T PF14966_consen 92 KL 93 (97)
T ss_pred HH
Confidence 33
No 66
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=37.15 E-value=2.8e+02 Score=29.16 Aligned_cols=31 Identities=13% Similarity=0.196 Sum_probs=15.9
Q ss_pred hHHHHhhhhhhhhhhhhhhhcHHHHHhhhcC
Q 004360 60 FASLFSLCNDTVSRTDEISTDLSDILGLISY 90 (759)
Q Consensus 60 f~~~~~~~~~l~~~~~~l~~~l~~l~~~i~~ 90 (759)
+...-....++-.++..+..+|+.+..++.+
T Consensus 47 ~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~ 77 (239)
T COG1579 47 LEALEIELEDLENQVSQLESEIQEIRERIKR 77 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444455555555555555555555544
No 67
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=37.08 E-value=2.7e+02 Score=26.60 Aligned_cols=100 Identities=14% Similarity=0.251 Sum_probs=77.3
Q ss_pred cchHHHHHHhhhccchhhhHhHHHHHHhhhhchHHHHhhhhhhhhhhhhhhhcHHHHHhhhcCCCcchHHHHHHHHHHHH
Q 004360 28 APDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAK 107 (759)
Q Consensus 28 ~~dl~~~i~~l~~~~~e~k~~v~~~i~~~y~~f~~~~~~~~~l~~~~~~l~~~l~~l~~~i~~~~~~~~l~~~~~~~~~l 107 (759)
.++++..-.++..++.++=.+=|.-.++.-..|......-.+...++.+++..|..-+..|.. -+.++++.-.+-..
T Consensus 42 ~~~f~~~~~~~~~~L~~vV~eh~q~Fn~sI~sy~~i~~~i~~sq~~i~~lK~~L~~ak~~L~~--~~~eL~~L~~~s~~- 118 (142)
T PF04048_consen 42 YQEFEELKKRIEKALQEVVNEHYQGFNSSIGSYSQILSSISESQERIRELKESLQEAKSLLGC--RREELKELWQRSQE- 118 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHH-
Confidence 448888888888888888888888888888889999999999999999999999999999976 35566666555444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHH
Q 004360 108 MKEARVKKELLELVRAIVEIGERLKG 133 (759)
Q Consensus 108 ~~el~~~~~~~~~l~~l~~~~~~L~~ 133 (759)
.+..=.++..++.|+.+-+.|++
T Consensus 119 ---~~~mi~iL~~Ie~l~~vP~kie~ 141 (142)
T PF04048_consen 119 ---YKEMIEILDQIEELRQVPDKIES 141 (142)
T ss_pred ---HHHHHHHHHHHHHHHHhHHHHhc
Confidence 44455566666777777666653
No 68
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=36.83 E-value=1.7e+02 Score=32.72 Aligned_cols=45 Identities=24% Similarity=0.374 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhHHHHHHhhcC
Q 004360 97 VKEIIDEVSAKMKEAR-VKKELLELVRAIVEIGERLKGVKEALRDG 141 (759)
Q Consensus 97 l~~~~~~~~~l~~el~-~~~~~~~~l~~l~~~~~~L~~~~~~l~~~ 141 (759)
++...++++..+.+.+ .+..+....+++.++.+.|.++.+.++++
T Consensus 275 Yr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeer 320 (359)
T PF10498_consen 275 YRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEER 320 (359)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444444444443 35666677788889999999998887665
No 69
>PRK01156 chromosome segregation protein; Provisional
Probab=36.53 E-value=2.2e+02 Score=35.71 Aligned_cols=35 Identities=17% Similarity=0.475 Sum_probs=17.1
Q ss_pred HHHhhHHHHHHhhc-CchhhhHHHHHHHHhHhhccC
Q 004360 127 IGERLKGVKEALRD-GRLRFAAEELRELKKDLRVGD 161 (759)
Q Consensus 127 ~~~~L~~~~~~l~~-~~~~~Aa~~L~~l~~~l~~~~ 161 (759)
+...+...+.+... ..+..++..+..++..++...
T Consensus 714 l~eel~~~~~~~~~l~~~~~~~~~l~~~r~~l~k~~ 749 (895)
T PRK01156 714 LSDRINDINETLESMKKIKKAIGDLKRLREAFDKSG 749 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 44444444444332 223445555566666665543
No 70
>COG1392 Phosphate transport regulator (distant homolog of PhoU) [Inorganic ion transport and metabolism]
Probab=36.40 E-value=2e+02 Score=29.80 Aligned_cols=58 Identities=19% Similarity=0.165 Sum_probs=44.2
Q ss_pred cchHHHHHHhhhccchhhhHhHHHHHHhhh------hchHHHHhhhhhhhhhhhhhhhcHHHHH
Q 004360 28 APDLRLLISRLEFHSLQIKSKVQSYIASHH------QDFASLFSLCNDTVSRTDEISTDLSDIL 85 (759)
Q Consensus 28 ~~dl~~~i~~l~~~~~e~k~~v~~~i~~~y------~~f~~~~~~~~~l~~~~~~l~~~l~~l~ 85 (759)
.+.+...|..++++..++|.+|-..+.+-. .++..+.++..++++..+....-+.--+
T Consensus 44 ~e~~~~~I~~lE~~aD~ik~~i~~~l~~~~flP~~R~Dil~L~~~~D~i~D~~ed~A~~l~l~~ 107 (217)
T COG1392 44 AEELLKEIKDLEHEADEIKREIRLELYKGFFLPFDREDILELIESQDDIADAAEDAAKLLLLRK 107 (217)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 468899999999999999999999999833 4677777777777776666655544433
No 71
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=35.66 E-value=1.3e+02 Score=32.96 Aligned_cols=62 Identities=11% Similarity=0.145 Sum_probs=33.1
Q ss_pred cHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhHHHHHHhhcCch
Q 004360 80 DLSDILGLISYRPIDKEVKEIIDEVSAKMKEARVKKELL-ELVRAIVEIGERLKGVKEALRDGRL 143 (759)
Q Consensus 80 ~l~~l~~~i~~~~~~~~l~~~~~~~~~l~~el~~~~~~~-~~l~~l~~~~~~L~~~~~~l~~~~~ 143 (759)
+++.++..|.. ...++.....++..++.|++..+..+ ..-.+..++...+.+++.-+++.+-
T Consensus 205 eL~~lk~~l~~--~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~ 267 (312)
T smart00787 205 ELDRAKEKLKK--LLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRG 267 (312)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 45555555433 34455555555666666665433332 3444556666666666665555443
No 72
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=35.39 E-value=3.3e+02 Score=30.00 Aligned_cols=102 Identities=9% Similarity=0.062 Sum_probs=57.3
Q ss_pred chHHHHHHhhhccchhhhHhHHHHHHhhhhchHHHHhhhhhhhhhhhhhhhcHHHHHhhhcCCCcchHHHHHHHHHHHHH
Q 004360 29 PDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKM 108 (759)
Q Consensus 29 ~dl~~~i~~l~~~~~e~k~~v~~~i~~~y~~f~~~~~~~~~l~~~~~~l~~~l~~l~~~i~~~~~~~~l~~~~~~~~~l~ 108 (759)
..|..-+..+...+.++--+-|.++-..........+...++..+++.+.+++..+...... +........++.....
T Consensus 17 ~~L~~~~~~l~~ql~~La~~~y~~fi~~~~~~~~i~~~~~~~~~~l~~L~~~l~~L~~~~~~--f~~~~~~~~~~r~~~~ 94 (338)
T PF04124_consen 17 QSLSEEIASLDAQLQSLAFRNYKTFIDNAECSSDIRQELSSLSDSLDSLLDSLPELDEACQR--FSSKAQKISEERKKAS 94 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 35666666666666666666666666666666666666666666666666666666666433 3334444444444433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhH
Q 004360 109 KEARVKKELLELVRAIVEIGERLK 132 (759)
Q Consensus 109 ~el~~~~~~~~~l~~l~~~~~~L~ 132 (759)
.-+.....++++|+-=+-++..+.
T Consensus 95 ~~l~~~~~l~diLElP~Lm~~ci~ 118 (338)
T PF04124_consen 95 LLLENHDRLLDILELPQLMDTCIR 118 (338)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHh
Confidence 444444555555543333333333
No 73
>PF08112 ATP-synt_E_2: ATP synthase epsilon subunit; InterPro: IPR012508 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. A-ATPases (or A1A0-ATPase) (3.6.3.14 from EC) are found exclusively in Archaea and display a close resemblance in structure and subunit composition with V-ATPases, although their function in both ATP synthesis and ATP hydrolysis is closer to that of F-ATPases []. A-ATPases are composed of two linked complexes: the A1 complex consisting of seven subunits contains the catalytic core that synthesizes/hydrolyses ATP, while the A0 complex consisting of at least two subunits forms the membrane-spanning pore []. The rotary motor in A-ATPases is composed of only two subunits, the stator subunit I and the rotor subunit C []. A-ATPases may have arisen as an adaptation to the different cellular needs and the more extreme environmental conditions faced by Archaeal species. The epsilon subunit is the smallest (7 kDa) of those found in the A1 complex. Unlike the A, B and C subunits, the epsilon subunit does not have a homologous counterpart in F- or V-ATPases []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0015986 ATP synthesis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain
Probab=35.23 E-value=46 Score=26.20 Aligned_cols=37 Identities=16% Similarity=0.087 Sum_probs=32.8
Q ss_pred CcchHHHHHHhhhccchhhhHhHHHHHHhhhhchHHH
Q 004360 27 TAPDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASL 63 (759)
Q Consensus 27 ~~~dl~~~i~~l~~~~~e~k~~v~~~i~~~y~~f~~~ 63 (759)
.+.-+.+.|+.|....++-|.|+.+-|+..|...+..
T Consensus 5 ~~~~~d~yI~~Lk~kLd~Kk~Eil~~ln~EY~kiLk~ 41 (56)
T PF08112_consen 5 DKSTIDKYISILKSKLDEKKSEILSNLNMEYEKILKQ 41 (56)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556789999999999999999999999999887665
No 74
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=35.20 E-value=2.5e+02 Score=29.79 Aligned_cols=110 Identities=10% Similarity=0.093 Sum_probs=57.2
Q ss_pred ccccCCCCCCCCCCCcchHHHHHHhhhccchhhh-------------HhHHHHHHhhhhc---hHHHHhhhhhh------
Q 004360 13 LLSTHDLTDQTAPLTAPDLRLLISRLEFHSLQIK-------------SKVQSYIASHHQD---FASLFSLCNDT------ 70 (759)
Q Consensus 13 ~~~~~~~~~~~~~l~~~dl~~~i~~l~~~~~e~k-------------~~v~~~i~~~y~~---f~~~~~~~~~l------ 70 (759)
+|-+..+.||..- +.+.....-+.+..+++|++ .-+|+++.+.--- --+.+++.-.+
T Consensus 31 ll~~~~~~~~~~d-~~~~~~q~~~~i~~k~~e~r~~r~lat~l~~~g~~i~e~ls~~~~~~~~~~~aa~Rplel~e~Ekv 109 (338)
T KOG3647|consen 31 LLTSPGQNEADND-EEDQRDQYRSLIGDKIEELRKARELATDLTQRGTTICEMLSKELLHKESLMSAAQRPLELLEVEKV 109 (338)
T ss_pred HHhCcCcCCCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHH
Confidence 3334444455433 33455555556666666654 4577777654311 11112222222
Q ss_pred -hhhhhhhhhcHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004360 71 -VSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMKEARVKKELLELVRAIV 125 (759)
Q Consensus 71 -~~~~~~l~~~l~~l~~~i~~~~~~~~l~~~~~~~~~l~~el~~~~~~~~~l~~l~ 125 (759)
.+.+.++...++....++++ |-++.-..-+++..-+.|++.++.=++.|+.++
T Consensus 110 lk~aIq~i~~~~q~~~~~Lnn--vasdea~L~~Kierrk~ElEr~rkRle~LqsiR 163 (338)
T KOG3647|consen 110 LKSAIQAIQVRLQSSRAQLNN--VASDEAALGSKIERRKAELERTRKRLEALQSIR 163 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 24455555555555555555 445555555566666777777777666665554
No 75
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=35.11 E-value=1.1e+02 Score=28.80 Aligned_cols=39 Identities=10% Similarity=0.194 Sum_probs=17.3
Q ss_pred HHHHHHhhhhchHHHHhhh-hhhhhhhhhhhhcHHHHHhh
Q 004360 49 VQSYIASHHQDFASLFSLC-NDTVSRTDEISTDLSDILGL 87 (759)
Q Consensus 49 v~~~i~~~y~~f~~~~~~~-~~l~~~~~~l~~~l~~l~~~ 87 (759)
.|+.+.++-.+.+.+.+.+ ..+..|++.+..++|+....
T Consensus 44 A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei 83 (126)
T PF07889_consen 44 AVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEI 83 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3444444444444443332 23444555555555554443
No 76
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=34.71 E-value=5e+02 Score=34.32 Aligned_cols=122 Identities=19% Similarity=0.239 Sum_probs=62.3
Q ss_pred hhhhhhhhcHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhHHHHHHhhcCchhhhHHHH
Q 004360 72 SRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMKEARV-KKELLELVRAIVEIGERLKGVKEALRDGRLRFAAEEL 150 (759)
Q Consensus 72 ~~~~~l~~~l~~l~~~i~~~~~~~~l~~~~~~~~~l~~el~~-~~~~~~~l~~l~~~~~~L~~~~~~l~~~~~~~Aa~~L 150 (759)
.++.++..+|..|...+.+ .+......+...+..++.. +.....+..+++.+...+...+..+++.+|-.|-...
T Consensus 1028 ~~l~el~~eI~~l~~~~~~----~~~~~~~~e~~~l~~~~~~l~~~~a~l~g~~k~le~qi~~l~~eL~e~~yk~a~~ry 1103 (1311)
T TIGR00606 1028 NELKEVEEELKQHLKEMGQ----MQVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELREPQFRDAEEKY 1103 (1311)
T ss_pred HHHHHHHHHHHHHHHHHhh----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHH
Confidence 3344444455544444322 1223333344444444432 2233456677888888888888888776676666655
Q ss_pred HHHHhHhhccCCCCCCchh-HHHhHHH----HHHHHHHHHHHHHHHHHhhcc
Q 004360 151 RELKKDLRVGDENASEPLV-YGLLRKE----WLVCFEEIQELLVKFVESAVR 197 (759)
Q Consensus 151 ~~l~~~l~~~~~~~~~~~I-~~~L~~~----~~~l~~~i~~~L~~~~~~~v~ 197 (759)
.+..-.+........+..- +++|..- .......|-..+...|.....
T Consensus 1104 rka~i~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~w~~~~~ 1155 (1311)
T TIGR00606 1104 REMMIVMRTTELVNKDLDIYYKTLDQAIMKFHSMKMEEINKIIRDLWRSTYR 1155 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 5444443333211111111 1222222 233455677778888987653
No 77
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=34.40 E-value=6.6e+02 Score=28.31 Aligned_cols=44 Identities=23% Similarity=0.276 Sum_probs=27.2
Q ss_pred eecccccchhhhHHHHHhhhhccCCCccccccchHHHHhcchhHHHHHHHh
Q 004360 320 RCFGRLTWPRISELIISNFLSKVVPEDASKLADFQKIIDHTSEFEAALKEM 370 (759)
Q Consensus 320 ~~~g~~i~~~ls~~lI~~~L~~aIP~~~~~l~~f~~vi~~~~~Fe~~L~~l 370 (759)
..|+...-..+...+-. -+.+ -+..-+-..++.|.+||+.|..-
T Consensus 280 ~~Fc~~Tr~dL~~iL~~------~~~~-~dv~~Ll~aLq~T~~FE~~L~~r 323 (383)
T PF04100_consen 280 VEFCEITRKDLSEILSK------RKSE-LDVKLLLKALQKTLEFEKELAKR 323 (383)
T ss_pred HHHHHHHHHHHHHHHhh------cCCC-CcHHHHHHHHHHHHHHHHHHHHH
Confidence 45565555555433222 1233 24567778889999999998755
No 78
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=34.35 E-value=5.6e+02 Score=26.79 Aligned_cols=28 Identities=11% Similarity=0.233 Sum_probs=20.9
Q ss_pred hHHHHHHhhhccchhhhHhHHHHHHhhh
Q 004360 30 DLRLLISRLEFHSLQIKSKVQSYIASHH 57 (759)
Q Consensus 30 dl~~~i~~l~~~~~e~k~~v~~~i~~~y 57 (759)
+....|+.|+.+..++...+...+.+|-
T Consensus 26 ~~k~yi~~Le~~Lk~l~k~~~~lv~~rk 53 (234)
T cd07664 26 EKQQQFENLDQQLRKLHASVESLVCHRK 53 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888888888888888775555443
No 79
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=34.02 E-value=1.3e+02 Score=29.86 Aligned_cols=24 Identities=21% Similarity=0.174 Sum_probs=13.9
Q ss_pred CcchHHHHHHhhhccchhhhHhHH
Q 004360 27 TAPDLRLLISRLEFHSLQIKSKVQ 50 (759)
Q Consensus 27 ~~~dl~~~i~~l~~~~~e~k~~v~ 50 (759)
++.|+....-.......++|+++.
T Consensus 45 tk~d~e~~~~~~~a~~~eLr~el~ 68 (177)
T PF07798_consen 45 TKSDLENQEYLFKAAIAELRSELQ 68 (177)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555566666666555
No 80
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=33.91 E-value=1.9e+02 Score=31.11 Aligned_cols=125 Identities=17% Similarity=0.163 Sum_probs=0.0
Q ss_pred HHHHHhhhccchhhhHhHHHHHHhhhhchHHHHhhhhhhhhhhhhhhhcHHHHHhhhcCCCcchHHHHHHHHHHHHHHHH
Q 004360 32 RLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMKEA 111 (759)
Q Consensus 32 ~~~i~~l~~~~~e~k~~v~~~i~~~y~~f~~~~~~~~~l~~~~~~l~~~l~~l~~~i~~~~~~~~l~~~~~~~~~l~~el 111 (759)
+..+++|++.+...-.+|.+.=..-..+..+++|.-..+..+..+++..-..+.-.+++ -...+...+.++..+|+|.
T Consensus 247 ~~~Ldklh~eit~~LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~gv~~--rT~~L~eVm~e~E~~Kqem 324 (384)
T KOG0972|consen 247 GPYLDKLHKEITKALEKIASREKSLNNQLASLMQKFRRATDTLSELREKYKQASVGVSS--RTETLDEVMDEIEQLKQEM 324 (384)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHH--HHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhhcCchhhhHHHHHHHHhHhh
Q 004360 112 RVKKELLELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLR 158 (759)
Q Consensus 112 ~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~~~~~Aa~~L~~l~~~l~ 158 (759)
+..-+...-=--++.|.+.+.+..+...+-++.-++-.-.-++..+.
T Consensus 325 Ee~G~~msDGaplvkIkqavsKLk~et~~mnv~igv~ehs~lq~~l~ 371 (384)
T KOG0972|consen 325 EEQGAKMSDGAPLVKIKQAVSKLKEETQTMNVQIGVFEHSILQTYLR 371 (384)
T ss_pred HHhcccccCCchHHHHHHHHHHHHHHHHhhhhheehhhHHHHHHHHH
No 81
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=33.06 E-value=2.9e+02 Score=28.24 Aligned_cols=91 Identities=10% Similarity=0.196 Sum_probs=57.2
Q ss_pred CCcchHHHHHHhhhccchhhhHhHHHHHHhhhhchHHHHhhhhhhhhhhhhhhhc-----------------HHHHHhhh
Q 004360 26 LTAPDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTD-----------------LSDILGLI 88 (759)
Q Consensus 26 l~~~dl~~~i~~l~~~~~e~k~~v~~~i~~~y~~f~~~~~~~~~l~~~~~~l~~~-----------------l~~l~~~i 88 (759)
.+++.|...+..=+.+|-.+++++..+ ..+|-+-+..-+-|-|.+..+.+-++. .+.+...
T Consensus 57 ~~~~~L~~~LrEkEErILaLEad~~kW-EqkYLEEs~mrq~a~dAaa~aa~~rdttiI~~s~~~s~~~s~r~~eel~~a- 134 (205)
T PF12240_consen 57 NNASNLKELLREKEERILALEADMTKW-EQKYLEESAMRQFAMDAAATAAAQRDTTIINHSPSESYNSSLREEEELHMA- 134 (205)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCCCCCCccccchHHHHHh-
Confidence 677889999999999999999999855 566655555555544444333222111 1111111
Q ss_pred cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004360 89 SYRPIDKEVKEIIDEVSAKMKEARVKKELLELVRA 123 (759)
Q Consensus 89 ~~~~~~~~l~~~~~~~~~l~~el~~~~~~~~~l~~ 123 (759)
+.+.++.-.++..|..+|..+.+++.+|++
T Consensus 135 -----~~K~qemE~RIK~LhaqI~EKDAmIkVLQq 164 (205)
T PF12240_consen 135 -----NRKCQEMENRIKALHAQIAEKDAMIKVLQQ 164 (205)
T ss_pred -----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 235566666677777777777777666654
No 82
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=32.54 E-value=2.2e+02 Score=33.18 Aligned_cols=28 Identities=7% Similarity=0.121 Sum_probs=22.2
Q ss_pred hHHHHHHhhhccchhhhHhHHHHHHhhhh
Q 004360 30 DLRLLISRLEFHSLQIKSKVQSYIASHHQ 58 (759)
Q Consensus 30 dl~~~i~~l~~~~~e~k~~v~~~i~~~y~ 58 (759)
-|...+.++......+|.++- .+...|.
T Consensus 313 ~l~~~l~k~ke~n~~L~~Eie-~V~~sY~ 340 (570)
T COG4477 313 ILPDYLEKAKENNEHLKEEIE-RVKESYR 340 (570)
T ss_pred chHHHHHHHHHHHHHHHHHHH-HHHHHhc
Confidence 577788888888889998886 6777773
No 83
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=32.54 E-value=2.2e+02 Score=34.49 Aligned_cols=11 Identities=18% Similarity=0.314 Sum_probs=4.6
Q ss_pred ccccccCCeEE
Q 004360 196 VRFEKESNRVL 206 (759)
Q Consensus 196 v~~~~~~~~i~ 206 (759)
|.++++...++
T Consensus 528 v~id~~~~~~~ 538 (650)
T TIGR03185 528 LKIDPETFAVS 538 (650)
T ss_pred EEEcCCceeEE
Confidence 34454333333
No 84
>PRK03918 chromosome segregation protein; Provisional
Probab=32.11 E-value=4.3e+02 Score=32.98 Aligned_cols=7 Identities=14% Similarity=0.188 Sum_probs=3.0
Q ss_pred HHHHHHh
Q 004360 188 LVKFVES 194 (759)
Q Consensus 188 L~~~~~~ 194 (759)
....|+.
T Consensus 749 ~~~if~~ 755 (880)
T PRK03918 749 ASEIFEE 755 (880)
T ss_pred HHHHHHH
Confidence 3444444
No 85
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=31.94 E-value=6.3e+02 Score=29.65 Aligned_cols=73 Identities=8% Similarity=0.083 Sum_probs=42.7
Q ss_pred hHHHHHHhhhccchhhhHhHHHHHHhhhhchHHHHhhhhhhhhhhhhhhhcHHHHHhhhcCCCcchHHHHHHHHH
Q 004360 30 DLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEV 104 (759)
Q Consensus 30 dl~~~i~~l~~~~~e~k~~v~~~i~~~y~~f~~~~~~~~~l~~~~~~l~~~l~~l~~~i~~~~~~~~l~~~~~~~ 104 (759)
.+...+.++.......+.++.++-..+...+.+......=...+++++.+.+..+...|.. .+++....+..|
T Consensus 113 ~lk~~l~e~~~El~~l~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~sL~ekl~lld~al~~--~~~~~~~~~~~f 185 (511)
T PF09787_consen 113 VLKIRLQELDQELRRLRRQLEELQNEKSRILSDESTVSRLQNGAPRSLQEKLSLLDEALKR--EDGNAITAVVEF 185 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCccHHHHHHHH
Confidence 4455556666666667777666645555555444333222234448888888888888765 344454544443
No 86
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=31.67 E-value=6.5e+02 Score=32.98 Aligned_cols=125 Identities=12% Similarity=0.151 Sum_probs=69.9
Q ss_pred CCCCCCCcchHHHHHHhhh--ccchhhhHhHHHHHHhhhhchHHHHhhhhhhhhhhhhhhhcHHHHHhhhcCCCcchHHH
Q 004360 21 DQTAPLTAPDLRLLISRLE--FHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVK 98 (759)
Q Consensus 21 ~~~~~l~~~dl~~~i~~l~--~~~~e~k~~v~~~i~~~y~~f~~~~~~~~~l~~~~~~l~~~l~~l~~~i~~~~~~~~l~ 98 (759)
+|...+.+.|+..++..+. .++..++.++ +-+...|..+...-+....+...+......+......++. .+.
T Consensus 218 ~~~~~~~~~~i~~W~~~~~~~~~~~~~r~~~-~~l~~~~~~l~~~~~~L~~l~~~l~~~~~~~~~~~~~~~~-----~~~ 291 (1201)
T PF12128_consen 218 PPKSRLKKNDIDDWLRDIRASQGFEKVRPEF-DKLQQQYRQLQALEQQLCHLHAELNADEQQLEQEQPELKE-----ELN 291 (1201)
T ss_pred chhhhcchhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-----HHH
Confidence 6777888999999999886 4668888887 4666678777777666665554444443333333333211 233
Q ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhhHHHHHHh---hcCchhhhHHHHH
Q 004360 99 EIIDEVSAKMKEAR-----VKKELLELVRAIVEIGERLKGVKEAL---RDGRLRFAAEELR 151 (759)
Q Consensus 99 ~~~~~~~~l~~el~-----~~~~~~~~l~~l~~~~~~L~~~~~~l---~~~~~~~Aa~~L~ 151 (759)
+.-.++..+.+++. ++...-.+-..+..+...|++++..- +..++......++
T Consensus 292 ~~~~~~~~l~~~~~e~~~~~~~~~~~~~~~l~~~~~~L~~i~~~~~~ye~~~i~~~~~~~~ 352 (1201)
T PF12128_consen 292 ELNEELEKLEDEIKELRDELNKELSALNADLARIKSELDEIEQQKKDYEDADIEQLIARVD 352 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 33333333333332 23444445556666666666655542 3333444444443
No 87
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=31.57 E-value=6.8e+02 Score=29.73 Aligned_cols=93 Identities=24% Similarity=0.262 Sum_probs=46.7
Q ss_pred HHHHhhhhhhhhhhhhhhhcHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhc
Q 004360 61 ASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMKEARVKKELLELVRAIVEIGERLKGVKEALRD 140 (759)
Q Consensus 61 ~~~~~~~~~l~~~~~~l~~~l~~l~~~i~~~~~~~~l~~~~~~~~~l~~el~~~~~~~~~l~~l~~~~~~L~~~~~~l~~ 140 (759)
.+.+-.|........++...+..+...+++ ..-.+.++..++.....++.+.-. .+.++.+||........+
T Consensus 244 ~~~l~~a~~~l~~~~~~d~~l~~~~~~l~e--a~~~l~ea~~el~~~~~~le~Dp~------~L~~ve~Rl~~L~~l~RK 315 (557)
T COG0497 244 LSLLGRALEALEDLSEYDGKLSELAELLEE--ALYELEEASEELRAYLDELEFDPN------RLEEVEERLFALKSLARK 315 (557)
T ss_pred HHHHHHHHHHHHHhhccChhHHHHHHHHHH--HHHHHHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHHHHHHHH
Confidence 444444444444455555555555555543 233455555555544444444322 234444555555554433
Q ss_pred Cc--hhhhHHHHHHHHhHhhccC
Q 004360 141 GR--LRFAAEELRELKKDLRVGD 161 (759)
Q Consensus 141 ~~--~~~Aa~~L~~l~~~l~~~~ 161 (759)
+. +.+.+...++++..+..+.
T Consensus 316 Y~~~~~~l~~~~~~~~~el~~L~ 338 (557)
T COG0497 316 YGVTIEDLLEYLDKIKEELAQLD 338 (557)
T ss_pred hCCCHHHHHHHHHHHHHHHHHhh
Confidence 33 4566666666666666664
No 88
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=31.30 E-value=4.9e+02 Score=30.84 Aligned_cols=128 Identities=22% Similarity=0.198 Sum_probs=54.1
Q ss_pred CCCcchHHHHHHhhhccchhhhHhHHHHHHhhhhc---hH-HHHhhhhhhhhhhhh-hhhcHHHHHhhhcCCCcchHHHH
Q 004360 25 PLTAPDLRLLISRLEFHSLQIKSKVQSYIASHHQD---FA-SLFSLCNDTVSRTDE-ISTDLSDILGLISYRPIDKEVKE 99 (759)
Q Consensus 25 ~l~~~dl~~~i~~l~~~~~e~k~~v~~~i~~~y~~---f~-~~~~~~~~l~~~~~~-l~~~l~~l~~~i~~~~~~~~l~~ 99 (759)
|-+-+.|.....+|.+ .++++..+...+.--+.+ +. ............... +...+..+...+++ +...+.+
T Consensus 208 ~~E~e~L~~e~~~L~n-~e~i~~~~~~~~~~L~~~~~~~~~~~~~~l~~~~~~l~~~~d~~~~~~~~~l~~--~~~~l~d 284 (563)
T TIGR00634 208 PGEDEALEAEQQRLSN-LEKLRELSQNALAALRGDVDVQEGSLLEGLGEAQLALASVIDGSLRELAEQVGN--ALTEVEE 284 (563)
T ss_pred CCcHHHHHHHHHHHhC-HHHHHHHHHHHHHHHhCCccccccCHHHHHHHHHHHHHHhhhHhHHHHHHHHHH--HHHHHHH
Confidence 5566677777777754 344444444433322221 00 111111122222222 33344444444433 3334555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcC--chhhhHHHHHHHHhHhhccC
Q 004360 100 IIDEVSAKMKEARVKKELLELVRAIVEIGERLKGVKEALRDG--RLRFAAEELRELKKDLRVGD 161 (759)
Q Consensus 100 ~~~~~~~l~~el~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~--~~~~Aa~~L~~l~~~l~~~~ 161 (759)
+..++......+.+...- +.++..+|...+...... .+.+-...+++++..++...
T Consensus 285 ~~~~l~~~~~~l~~dp~~------L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~ 342 (563)
T TIGR00634 285 ATRELQNYLDELEFDPER------LNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLD 342 (563)
T ss_pred HHHHHHHHHHhCCCCHHH------HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHh
Confidence 555554444444333322 333444555444443222 24444455555555555543
No 89
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=31.27 E-value=5e+02 Score=27.61 Aligned_cols=13 Identities=23% Similarity=0.432 Sum_probs=6.8
Q ss_pred cchHHHHHHhhhc
Q 004360 28 APDLRLLISRLEF 40 (759)
Q Consensus 28 ~~dl~~~i~~l~~ 40 (759)
..++...++.+..
T Consensus 129 ~~~l~~ll~~~~~ 141 (291)
T TIGR00996 129 PPEIDDLLGSLTR 141 (291)
T ss_pred CccHHHHHHHHHH
Confidence 3356665555543
No 90
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=30.88 E-value=3e+02 Score=26.98 Aligned_cols=80 Identities=9% Similarity=0.147 Sum_probs=51.5
Q ss_pred hHHHHHHhhhccchhhhHhHHHHHHhhhhchHHHHhhhh-hhhhhhhhhh-------hcHHHHHhhhcCCCcchHHHHHH
Q 004360 30 DLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCN-DTVSRTDEIS-------TDLSDILGLISYRPIDKEVKEII 101 (759)
Q Consensus 30 dl~~~i~~l~~~~~e~k~~v~~~i~~~y~~f~~~~~~~~-~l~~~~~~l~-------~~l~~l~~~i~~~~~~~~l~~~~ 101 (759)
-|..--+.+...+..+.+.+.+.|..+-+.+.+.+.... .+.-.++.|+ ...+.+... ++..++..+
T Consensus 31 aik~~sd~~~~~l~~~~~~l~eeik~~n~~~~e~l~~~~~kl~et~~~L~k~~Pev~~qa~~l~e~-----lQ~~vq~l~ 105 (155)
T PF07464_consen 31 AIKEQSDSVAQQLQNVSSSLQEEIKDANPEAEEALKQLKTKLEETAEKLRKANPEVEKQANELQEK-----LQSAVQSLV 105 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT-SSTHHHHHHHHHHHHHHHHHGGGG-SHHHHHT-SSSHHH-----HHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH-----HHHHHHHHH
Confidence 456666778888888888888888887777777754432 2223333344 334444444 355788888
Q ss_pred HHHHHHHHHHHHH
Q 004360 102 DEVSAKMKEARVK 114 (759)
Q Consensus 102 ~~~~~l~~el~~~ 114 (759)
.+..++.+++..+
T Consensus 106 ~E~qk~~k~v~~~ 118 (155)
T PF07464_consen 106 QESQKLAKEVSEN 118 (155)
T ss_dssp HHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHH
Confidence 8888888888754
No 91
>PRK03918 chromosome segregation protein; Provisional
Probab=30.04 E-value=3.8e+02 Score=33.51 Aligned_cols=11 Identities=27% Similarity=0.148 Sum_probs=4.0
Q ss_pred hHHHHHHHHHH
Q 004360 173 LRKEWLVCFEE 183 (759)
Q Consensus 173 L~~~~~~l~~~ 183 (759)
+...+...++.
T Consensus 745 l~~~~~~if~~ 755 (880)
T PRK03918 745 VGEIASEIFEE 755 (880)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 92
>PTZ00464 SNF-7-like protein; Provisional
Probab=29.73 E-value=3.4e+02 Score=28.00 Aligned_cols=26 Identities=19% Similarity=0.273 Sum_probs=17.3
Q ss_pred chHHHHHHhhhccchhhhHhHHHHHHh
Q 004360 29 PDLRLLISRLEFHSLQIKSKVQSYIAS 55 (759)
Q Consensus 29 ~dl~~~i~~l~~~~~e~k~~v~~~i~~ 55 (759)
+.+...+.++..|.+.+..++.. |..
T Consensus 14 ~t~~d~~~~l~~r~~~l~kKi~~-ld~ 39 (211)
T PTZ00464 14 PTLEDASKRIGGRSEVVDARINK-IDA 39 (211)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 45777777777777777777743 553
No 93
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=29.40 E-value=8.4e+02 Score=31.13 Aligned_cols=103 Identities=16% Similarity=0.162 Sum_probs=50.5
Q ss_pred HHHHhhhccchhhhHhHHHHHHhh--------hh----chHHHHhhhhhhhhhhhhhhhcHHHHHhhhcCCCcchHHH-H
Q 004360 33 LLISRLEFHSLQIKSKVQSYIASH--------HQ----DFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVK-E 99 (759)
Q Consensus 33 ~~i~~l~~~~~e~k~~v~~~i~~~--------y~----~f~~~~~~~~~l~~~~~~l~~~l~~l~~~i~~~~~~~~l~-~ 99 (759)
.++..+..+++.+|.+|+.+=.|+ |. ++-.....+..+..+++.+.+.+..+..+.-+ +..+. .
T Consensus 404 ~llKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~---~~~~~~~ 480 (1041)
T KOG0243|consen 404 TLLKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMN---QLEIKEL 480 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHH
Confidence 456677888888899988664432 31 23333333444444444444444444444311 11111 2
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhHHHHHHh
Q 004360 100 IIDEVSAKMKEAR-VKKELLELVRAIVEIGERLKGVKEAL 138 (759)
Q Consensus 100 ~~~~~~~l~~el~-~~~~~~~~l~~l~~~~~~L~~~~~~l 138 (759)
...+...+++.|. +++++..+=+.++.+...|.+-+..+
T Consensus 481 l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii 520 (1041)
T KOG0243|consen 481 LKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEII 520 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233344455553 34555555555666666555544443
No 94
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=29.24 E-value=5.9e+02 Score=29.84 Aligned_cols=126 Identities=11% Similarity=0.081 Sum_probs=66.5
Q ss_pred HhhhhhhhhhhhhhhhcHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH--------
Q 004360 64 FSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMKEARVKKELLELVRAIVEIGERLKGVK-------- 135 (759)
Q Consensus 64 ~~~~~~l~~~~~~l~~~l~~l~~~i~~~~~~~~l~~~~~~~~~l~~el~~~~~~~~~l~~l~~~~~~L~~~~-------- 135 (759)
.....+++.++.+..+-|..+..-+.+ ++.+|....+++..|+.+-..... .|+.-+.+.+.|+.+=
T Consensus 13 ~~~~~~Lh~~i~~cd~~L~~le~~L~~--Fq~~L~~iS~eI~~LQ~~S~~l~~---~L~Nrk~~~~~L~~~i~~i~ipP~ 87 (508)
T PF04129_consen 13 SENFADLHNQIQECDSILESLEEMLSN--FQNDLGSISSEIRSLQERSSSLNV---KLKNRKAVEEKLSPFIDDIVIPPD 87 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHcCCHH
Confidence 334444555555555555555555544 556666666666555444332222 2233333333333321
Q ss_pred --HHhhcCchhh-----hHHHHHHHHhHhhccCCCCCCchhHHHhHHHHHHHHHHHHHHHHHHHHhhc
Q 004360 136 --EALRDGRLRF-----AAEELRELKKDLRVGDENASEPLVYGLLRKEWLVCFEEIQELLVKFVESAV 196 (759)
Q Consensus 136 --~~l~~~~~~~-----Aa~~L~~l~~~l~~~~~~~~~~~I~~~L~~~~~~l~~~i~~~L~~~~~~~v 196 (759)
..+-+|+..+ ..+.+.+.....+.. ...+..+.+.++.....|+....+..+++.-..+
T Consensus 88 lI~~I~~~~v~e~~~~~~~~~~~k~~~~~~~~--~~~~~~a~~d~~~~Le~L~~ka~~rir~fl~~kI 153 (508)
T PF04129_consen 88 LIRSICEGPVNEQYIEELLELLKKKIFFSKDQ--SFKDSKAIKDVKPELEKLKNKAVERIRDFLLKKI 153 (508)
T ss_pred HHHhHhcCCCCHHHHHHHHHHHHHHHHHHhhc--ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1233444332 234443333333222 2367889999999999999999888888775543
No 95
>PRK04863 mukB cell division protein MukB; Provisional
Probab=28.72 E-value=9.4e+02 Score=32.31 Aligned_cols=19 Identities=11% Similarity=0.127 Sum_probs=12.5
Q ss_pred eeeeeeeeeeeeccccccC
Q 004360 600 EQVVFILEKVHIIWEPLLL 618 (759)
Q Consensus 600 ~q~~~~L~~L~~~W~~vLp 618 (759)
..+...+..++..|.+||-
T Consensus 1105 ~~~re~I~~aK~~W~~v~~ 1123 (1486)
T PRK04863 1105 HEMREQVVNAKAGWCAVLR 1123 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444556677777887775
No 96
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=28.07 E-value=1.7e+02 Score=25.46 Aligned_cols=58 Identities=24% Similarity=0.318 Sum_probs=38.1
Q ss_pred hhhhhhhhhhhhhhhcHHHHHhhhcCCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004360 65 SLCNDTVSRTDEISTDLSDILGLISYRP-IDKEVKEIIDEVSAKMKEARVKKELLELVR 122 (759)
Q Consensus 65 ~~~~~l~~~~~~l~~~l~~l~~~i~~~~-~~~~l~~~~~~~~~l~~el~~~~~~~~~l~ 122 (759)
..+.|+.+.+.+++..++..++.|++.| ++..+-+--.++..|+.+++..++++.-++
T Consensus 21 ~~~kd~~~~~~~lk~Klq~ar~~i~~lpgi~~s~eeq~~~i~~Le~~i~~k~~~L~~~~ 79 (83)
T PF07544_consen 21 LSSKDLDTATGSLKHKLQKARAAIRELPGIDRSVEEQEEEIEELEEQIRKKREVLQKFK 79 (83)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466667777777777777777766533 223455555667788888888887765444
No 97
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=27.46 E-value=7.7e+02 Score=32.62 Aligned_cols=25 Identities=12% Similarity=0.040 Sum_probs=16.4
Q ss_pred CcchHHHHHHhhhccchhhhHhHHH
Q 004360 27 TAPDLRLLISRLEFHSLQIKSKVQS 51 (759)
Q Consensus 27 ~~~dl~~~i~~l~~~~~e~k~~v~~ 51 (759)
+.++|...++.+..+.+.++.++-+
T Consensus 823 s~~ele~ei~~~~~el~~l~~~~e~ 847 (1311)
T TIGR00606 823 TVQQVNQEKQEKQHELDTVVSKIEL 847 (1311)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567777777777777776555443
No 98
>PRK13658 hypothetical protein; Provisional
Probab=27.41 E-value=1.1e+02 Score=24.36 Aligned_cols=33 Identities=30% Similarity=0.406 Sum_probs=27.0
Q ss_pred HHHHHhhHHHHHHhhcCchhhhHHHHHHHHhHh
Q 004360 125 VEIGERLKGVKEALRDGRLRFAAEELRELKKDL 157 (759)
Q Consensus 125 ~~~~~~L~~~~~~l~~~~~~~Aa~~L~~l~~~l 157 (759)
+.+-++++-+=.-+-.|+|.+|++.||-++..|
T Consensus 7 q~~A~RIDTVLDILVAGdyHSAI~NLEILKaEL 39 (59)
T PRK13658 7 QRVAERIDTVLDILVAGDYHSAIHNLEILKAEL 39 (59)
T ss_pred HHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 455667777777889999999999999888765
No 99
>PF14276 DUF4363: Domain of unknown function (DUF4363)
Probab=26.32 E-value=3.6e+02 Score=24.72 Aligned_cols=87 Identities=22% Similarity=0.157 Sum_probs=65.1
Q ss_pred hhhhhhhhhcHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhHHHHHHhhcCchhhhH
Q 004360 71 VSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMKEARVKKELLEL---VRAIVEIGERLKGVKEALRDGRLRFAA 147 (759)
Q Consensus 71 ~~~~~~l~~~l~~l~~~i~~~~~~~~l~~~~~~~~~l~~el~~~~~~~~~---l~~l~~~~~~L~~~~~~l~~~~~~~Aa 147 (759)
...++.+..+++.+...|++ .+-..+-..+.++.+.-+......+. =+.+..+...|.....++..++-..|+
T Consensus 22 ~~~~~~i~~~l~~i~~~i~~----~dW~~A~~~~~~l~~~W~k~~~~~~~~~~h~eid~i~~sl~rl~~~i~~~dk~~~l 97 (121)
T PF14276_consen 22 NNSTDSIEEQLEQIEEAIEN----EDWEKAYKETEELEKEWDKNKKRWSILIEHQEIDNIDISLARLKGYIEAKDKSESL 97 (121)
T ss_pred hhHHHHHHHHHHHHHHHHHh----CCHHHHHHHHHHHHHHHHhhchheeeeecHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 34456666667777777644 35666666777777776665554333 367888889999999999999999999
Q ss_pred HHHHHHHhHhhccC
Q 004360 148 EELRELKKDLRVGD 161 (759)
Q Consensus 148 ~~L~~l~~~l~~~~ 161 (759)
..|..++..++.++
T Consensus 98 ~el~~lk~~i~~i~ 111 (121)
T PF14276_consen 98 AELAELKELIEHIP 111 (121)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998886
No 100
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.25 E-value=6.2e+02 Score=27.07 Aligned_cols=19 Identities=5% Similarity=-0.025 Sum_probs=8.7
Q ss_pred hhcCchhhhHHHHHHHHhH
Q 004360 138 LRDGRLRFAAEELRELKKD 156 (759)
Q Consensus 138 l~~~~~~~Aa~~L~~l~~~ 156 (759)
++.+.|-+.+..+..+...
T Consensus 124 l~SkSfsD~IsRvtAi~~i 142 (265)
T COG3883 124 LNSKSFSDLISRVTAISVI 142 (265)
T ss_pred HccCcHHHHHHHHHHHHHH
Confidence 4444554444444444433
No 101
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=26.06 E-value=3.1e+02 Score=36.99 Aligned_cols=83 Identities=17% Similarity=0.172 Sum_probs=60.1
Q ss_pred chHHHHHHhhhccchhhhHhHHHHHHhhhhchHHHHhhhhhhhhhhhhhhhcHHHHHhhhcCCCcchHHHHHHHHHHHHH
Q 004360 29 PDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKM 108 (759)
Q Consensus 29 ~dl~~~i~~l~~~~~e~k~~v~~~i~~~y~~f~~~~~~~~~l~~~~~~l~~~l~~l~~~i~~~~~~~~l~~~~~~~~~l~ 108 (759)
.++...|..|.+.+.++|.+..+.....+.=-...-....+..++++.+..+++.++..+.+ .+..+.....+++.|+
T Consensus 801 ~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~--~~~~~~~le~k~~eL~ 878 (1822)
T KOG4674|consen 801 DKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDS--VSTNIAKLEIKLSELE 878 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 35677888888888888888777766555444444555777778888888888888877755 5567777777777777
Q ss_pred HHHHH
Q 004360 109 KEARV 113 (759)
Q Consensus 109 ~el~~ 113 (759)
++|+.
T Consensus 879 k~l~~ 883 (1822)
T KOG4674|consen 879 KRLKS 883 (1822)
T ss_pred HHHHH
Confidence 77764
No 102
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.08 E-value=4.5e+02 Score=28.15 Aligned_cols=71 Identities=23% Similarity=0.243 Sum_probs=42.9
Q ss_pred hhhhhcHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-----------HHHhhcCch
Q 004360 75 DEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMKEARVKKELLELVRAIVEIGERLKGV-----------KEALRDGRL 143 (759)
Q Consensus 75 ~~l~~~l~~l~~~i~~~~~~~~l~~~~~~~~~l~~el~~~~~~~~~l~~l~~~~~~L~~~-----------~~~l~~~~~ 143 (759)
..-.+-++-..+.|+++|.+.-++. |-++-..+.=..++.|++++.-|+.| +-.+..|.|
T Consensus 100 ~~~~~A~e~y~~lL~ddpt~~v~~K---------RKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f 170 (289)
T KOG3060|consen 100 GNYKEAIEYYESLLEDDPTDTVIRK---------RKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDF 170 (289)
T ss_pred hchhhHHHHHHHHhccCcchhHHHH---------HHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHH
Confidence 3344455555666666555432222 33333333333456677777777763 445899999
Q ss_pred hhhHHHHHHHH
Q 004360 144 RFAAEELRELK 154 (759)
Q Consensus 144 ~~Aa~~L~~l~ 154 (759)
..|+.++|++-
T Consensus 171 ~kA~fClEE~l 181 (289)
T KOG3060|consen 171 EKAAFCLEELL 181 (289)
T ss_pred HHHHHHHHHHH
Confidence 99999998763
No 103
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=24.88 E-value=1e+03 Score=30.53 Aligned_cols=14 Identities=29% Similarity=0.453 Sum_probs=5.6
Q ss_pred hhhHHHHHHHHhHh
Q 004360 144 RFAAEELRELKKDL 157 (759)
Q Consensus 144 ~~Aa~~L~~l~~~l 157 (759)
......++.++...
T Consensus 397 ~e~e~k~~~L~~ev 410 (1074)
T KOG0250|consen 397 EERENKLEQLKKEV 410 (1074)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444333
No 104
>PF11902 DUF3422: Protein of unknown function (DUF3422); InterPro: IPR021830 This family of proteins are functionally uncharacterised. This protein is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 426 to 444 amino acids in length.
Probab=24.71 E-value=6.5e+02 Score=28.82 Aligned_cols=159 Identities=15% Similarity=0.177 Sum_probs=88.4
Q ss_pred HhhhhhhhhhhhhhhhcHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHH-
Q 004360 64 FSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMKEAR---------------VKKELLELVRAIVEI- 127 (759)
Q Consensus 64 ~~~~~~l~~~~~~l~~~l~~l~~~i~~~~~~~~l~~~~~~~~~l~~el~---------------~~~~~~~~l~~l~~~- 127 (759)
+..|..+..++.++..++..+...+.+.....+ ...++++.|..+++ |.+-+.+-|+++++-
T Consensus 208 LP~Ar~~~~~L~~~E~~L~~l~~~~~~~~~~~~--~LL~~Lt~LAa~vE~~~a~t~~RF~As~AY~~iV~~RL~eLrE~~ 285 (420)
T PF11902_consen 208 LPVARELSPELSELEQRLAALTQRMASSEDTDD--ELLDELTRLAAEVEALAARTSYRFSASRAYYEIVEQRLAELREER 285 (420)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHH--HHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhcccc
Confidence 666888888888888889999888877433333 56666666666664 233333333333221
Q ss_pred ---HHhhHHHHHHhhcCchhhhHHHHHHHHhHhhccCCCCCCchhHHHhHHHHHHHHHHHHHHHHHHHHhhccccccCCe
Q 004360 128 ---GERLKGVKEALRDGRLRFAAEELRELKKDLRVGDENASEPLVYGLLRKEWLVCFEEIQELLVKFVESAVRFEKESNR 204 (759)
Q Consensus 128 ---~~~L~~~~~~l~~~~~~~Aa~~L~~l~~~l~~~~~~~~~~~I~~~L~~~~~~l~~~i~~~L~~~~~~~v~~~~~~~~ 204 (759)
.+.+.+ .-+.++.-|++.++.+..-++.+.. +-...-.+|+.++.--.+.=...|-+..++
T Consensus 286 i~g~~tl~e----F~~RRl~PAmrTC~a~~~R~~~Ls~--rv~Ra~~LLRTrVdv~le~QN~~LL~SM~r---------- 349 (420)
T PF11902_consen 286 IPGYQTLSE----FLERRLTPAMRTCEAVERRQEDLSR--RVARATDLLRTRVDVELEQQNQDLLASMDR---------- 349 (420)
T ss_pred cCCCCcHHH----HHHHHhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhHHHHHHHHHHHHHHHHH----------
Confidence 122222 2455778888888888887777641 223333444444332111111111111111
Q ss_pred EEEEEEEeecCcccchHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccc
Q 004360 205 VLVKYQLTVDGLDGIELRTVLEAMEVVGILDYGLAKVADLKIKYVISPAV 254 (759)
Q Consensus 205 i~v~~~~~~~~~~~~~L~~vl~AL~~lg~l~~~l~~l~~~L~~~il~Pli 254 (759)
+.++ ..-||..+++|++..+--|.+ .|+.++++++-
T Consensus 350 -Ra~l--------QLrLQqtVEGLSVvAIsYY~v-----gL~~y~~k~l~ 385 (420)
T PF11902_consen 350 -RARL--------QLRLQQTVEGLSVVAISYYVV-----GLLGYLLKGLK 385 (420)
T ss_pred -HHHH--------HHHHHHHhhhHHHHHHHHHHH-----HHHHHHHhhHh
Confidence 0000 356889999999988776644 36666777753
No 105
>KOG2211 consensus Predicted Golgi transport complex 1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.70 E-value=3.5e+02 Score=32.55 Aligned_cols=16 Identities=13% Similarity=0.524 Sum_probs=8.1
Q ss_pred hhhhhccccceeeecc
Q 004360 381 ARLSNFAENVEVHFAS 396 (759)
Q Consensus 381 ~~L~~~v~~i~~~~~~ 396 (759)
.+|..|++.|..+-..
T Consensus 462 eeld~~I~hi~~el~a 477 (797)
T KOG2211|consen 462 EELDTYINHIDMELAA 477 (797)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555555544433
No 106
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=24.67 E-value=9.4e+02 Score=26.29 Aligned_cols=6 Identities=17% Similarity=0.052 Sum_probs=2.6
Q ss_pred hHHHHH
Q 004360 173 LRKEWL 178 (759)
Q Consensus 173 L~~~~~ 178 (759)
|+.++.
T Consensus 281 Lk~~~~ 286 (325)
T PF08317_consen 281 LKAKVD 286 (325)
T ss_pred HHHHHH
Confidence 444433
No 107
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=24.66 E-value=7.4e+02 Score=26.59 Aligned_cols=62 Identities=13% Similarity=0.182 Sum_probs=31.5
Q ss_pred cchHHHHHHhhhccchhhhHhHHHHHHhhhh-chHHHHhhhhhhhhhhhhhhhcHHHHHhhhc
Q 004360 28 APDLRLLISRLEFHSLQIKSKVQSYIASHHQ-DFASLFSLCNDTVSRTDEISTDLSDILGLIS 89 (759)
Q Consensus 28 ~~dl~~~i~~l~~~~~e~k~~v~~~i~~~y~-~f~~~~~~~~~l~~~~~~l~~~l~~l~~~i~ 89 (759)
.+||...+..+..+-+.+=..-..-+...|. .+..+...+......+..++.++..+...|.
T Consensus 164 ~~dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~ 226 (312)
T PF00038_consen 164 SSDLSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQ 226 (312)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhh
Confidence 4488888887766655444444444444443 2334444444444555555556655555553
No 108
>PF06133 DUF964: Protein of unknown function (DUF964); InterPro: IPR010368 This entry consists of several relatively short bacterial and archaeal hypothetical sequences. It also includes YlbF and YmcA proteins which are involved in the formation of biofilms []. YlbF regulates sporulation prior to stage II, positively controlling the competence regulator ComK at a post-transcriptional level. It may also modulate the translation, stability or activity of ComS and may work together with YmcA to regulate community development [].; PDB: 2IAZ_C 2OEE_A 2OEQ_D 2PIH_A.
Probab=24.57 E-value=5e+02 Score=23.06 Aligned_cols=97 Identities=15% Similarity=0.187 Sum_probs=56.7
Q ss_pred hcHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCchh--hhHHHHHHHHhH
Q 004360 79 TDLSDILGLISYRPIDKEVKEIIDEVSAKMKEARVKKELLELVRAIVEIGERLKGVKEALRDGRLR--FAAEELRELKKD 156 (759)
Q Consensus 79 ~~l~~l~~~i~~~~~~~~l~~~~~~~~~l~~el~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~~~~--~Aa~~L~~l~~~ 156 (759)
+.++.|...|.++ +...++...++.+..+..+..+++..+.....+...+ ..|... +....|.+++..
T Consensus 4 ~~a~eL~~~I~~s-------~ey~~~~~a~~~l~~d~e~~~l~~~f~~~q~~~~~~q---~~g~~~~~e~~~~l~~~~~~ 73 (108)
T PF06133_consen 4 DKANELAEAIKES-------EEYKRYKAAEEALEADPEAQKLIEEFQKLQQELQNAQ---MYGKEPPKEEIEELQELQEE 73 (108)
T ss_dssp HHHHHHHHHHHTS-------HHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHH---HTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-------HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH---hhccCCcHHHHHHHHHHHHH
Confidence 3455566666552 5555677777788888888877777777777665544 456554 666666666666
Q ss_pred hhccCCCCCCchhHHHhHHHHHHHHHHHHHHHH
Q 004360 157 LRVGDENASEPLVYGLLRKEWLVCFEEIQELLV 189 (759)
Q Consensus 157 l~~~~~~~~~~~I~~~L~~~~~~l~~~i~~~L~ 189 (759)
+...+ ...-|..-..++..+...|...+.
T Consensus 74 l~~~p----~v~~y~~ae~~~~~ll~~i~~~I~ 102 (108)
T PF06133_consen 74 LMQNP----VVKEYLQAEQALQDLLQDINQIIS 102 (108)
T ss_dssp HHTSH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66554 222233333444444444444443
No 109
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=24.48 E-value=8.5e+02 Score=25.69 Aligned_cols=115 Identities=9% Similarity=0.153 Sum_probs=58.2
Q ss_pred CCCCCcchHHHHHHhhhccchhhhHhHHHHH------HhhhhchHHHHhh----hhhhhhhhhhhhhcHHHHHhhhcCCC
Q 004360 23 TAPLTAPDLRLLISRLEFHSLQIKSKVQSYI------ASHHQDFASLFSL----CNDTVSRTDEISTDLSDILGLISYRP 92 (759)
Q Consensus 23 ~~~l~~~dl~~~i~~l~~~~~e~k~~v~~~i------~~~y~~f~~~~~~----~~~l~~~~~~l~~~l~~l~~~i~~~~ 92 (759)
++|-.=.+++..+++|...+..+..-+.-.+ ...+.+|.+++.. =.++...+.++...++.....+++
T Consensus 51 ~~~~eF~Emkey~d~L~~~L~~ieki~~Rl~kr~~ey~~~~~~fgk~~~lws~~E~~L~~~L~~~a~~~d~~~~~~~~-- 128 (243)
T cd07666 51 NRPEEFTEMNEYVEAFSQKINVLDKISQRIYKEQREYFEELKEYGPIYTLWSASEEELADSLKGMASCIDRCCKATDK-- 128 (243)
T ss_pred CCCHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHH--
Confidence 3443445777788887777666554443111 4455667777666 223334444444444422222211
Q ss_pred cchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCc
Q 004360 93 IDKEVKEIIDEV-SAKMKEARVKKELLELVRAIVEIGERLKGVKEALRDGR 142 (759)
Q Consensus 93 ~~~~l~~~~~~~-~~l~~el~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~~ 142 (759)
.+...-..+ ..|+.-+.+.+++..++..=..++.-+..-.+++..++
T Consensus 129 ---~~~~l~~~f~~~Lkeyv~y~~slK~vlk~R~~~Q~~le~k~e~l~k~~ 176 (243)
T cd07666 129 ---RMKGLSEQLLPVIHEYVLYSETLMGVIKRRDQIQAELDSKVEALANKK 176 (243)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 111111122 23444555666666666665666666666666655544
No 110
>PRK09039 hypothetical protein; Validated
Probab=24.12 E-value=5.4e+02 Score=28.50 Aligned_cols=10 Identities=50% Similarity=0.687 Sum_probs=5.6
Q ss_pred HHHHHHHhhh
Q 004360 300 IIQVVKFIHK 309 (759)
Q Consensus 300 l~~vl~FL~~ 309 (759)
-..|.+||..
T Consensus 293 A~aV~~~Li~ 302 (343)
T PRK09039 293 AISVVKFLIA 302 (343)
T ss_pred HHHHHHHHHH
Confidence 4555666654
No 111
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=24.09 E-value=8.9e+02 Score=25.76 Aligned_cols=68 Identities=12% Similarity=0.137 Sum_probs=36.1
Q ss_pred CCCCCCCcchHHHHHHhhhccchhhhHhHHHHHHhhhh-----------chHHHHhhhhhhhhhhhhhhhcHHHHHhhh
Q 004360 21 DQTAPLTAPDLRLLISRLEFHSLQIKSKVQSYIASHHQ-----------DFASLFSLCNDTVSRTDEISTDLSDILGLI 88 (759)
Q Consensus 21 ~~~~~l~~~dl~~~i~~l~~~~~e~k~~v~~~i~~~y~-----------~f~~~~~~~~~l~~~~~~l~~~l~~l~~~i 88 (759)
||..+-..+..+..+-+...++.+....+.+.+..+.. .....+..+.|+..++-+--.+.+.+....
T Consensus 124 ~p~~~~~~~~~~~~l~~~q~~v~~~~~~~R~~l~~~r~~~~~~~~~~~~~ll~~~~~a~Dl~E~~~as~~~y~~l~~~f 202 (284)
T PF12805_consen 124 DPDQHDDDEQLRIELAQQQIKVNEALEQARELLLRRRRSGRGKPSTYGRRLLLLFFEAVDLFERALASHYDYEELREQF 202 (284)
T ss_pred CCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHh
Confidence 45555445555555666666666666666666655522 233334455555555544444444444443
No 112
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.93 E-value=6e+02 Score=31.05 Aligned_cols=19 Identities=32% Similarity=0.216 Sum_probs=14.8
Q ss_pred CCCCCCCCCcchHHHHHHh
Q 004360 19 LTDQTAPLTAPDLRLLISR 37 (759)
Q Consensus 19 ~~~~~~~l~~~dl~~~i~~ 37 (759)
-+|||++-+|+|=++.=+|
T Consensus 587 ~~DPt~R~EKDDR~kl~DR 605 (1104)
T COG4913 587 TGDPTTRWEKDDRRKLGDR 605 (1104)
T ss_pred cCCCCccccccchhhcCcc
Confidence 3599999999997765444
No 113
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=23.57 E-value=3.2e+02 Score=30.25 Aligned_cols=97 Identities=19% Similarity=0.260 Sum_probs=51.7
Q ss_pred HHHhhhhhhhhhhhhhhhcHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHhhc
Q 004360 62 SLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMKEARVKKELLELVR-AIVEIGERLKGVKEALRD 140 (759)
Q Consensus 62 ~~~~~~~~l~~~~~~l~~~l~~l~~~i~~~~~~~~l~~~~~~~~~l~~el~~~~~~~~~l~-~l~~~~~~L~~~~~~l~~ 140 (759)
.......++..+|+.++.+|......++. -+.+....+..+..-+.+.+..+......+ .+.....-+.+. ..--+
T Consensus 5 ~GL~KL~et~~~V~~m~~~L~~~~~~L~~--k~~e~e~ll~~i~~~~~~a~~~~~~~~~ee~~~~~~~~ei~~~-~~~a~ 81 (344)
T PF12777_consen 5 NGLDKLKETEEQVEEMQEELEEKQPELEE--KQKEAEELLEEIEKEQEEAEKKKAIVEEEEEEAEKQAKEIEEI-KEEAE 81 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 44556667778888888888888777644 223444444444322222322332222222 122222222222 22234
Q ss_pred CchhhhHHHHHHHHhHhhccC
Q 004360 141 GRLRFAAEELRELKKDLRVGD 161 (759)
Q Consensus 141 ~~~~~Aa~~L~~l~~~l~~~~ 161 (759)
.++..|...|+++..+++.++
T Consensus 82 ~~L~~a~P~L~~A~~al~~l~ 102 (344)
T PF12777_consen 82 EELAEAEPALEEAQEALKSLD 102 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHCS-
T ss_pred HHHHHHHHHHHHHHHHHHhCC
Confidence 577888888888888888885
No 114
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=23.55 E-value=5e+02 Score=25.75 Aligned_cols=18 Identities=17% Similarity=0.239 Sum_probs=7.3
Q ss_pred hHHHHHHhhhccchhhhH
Q 004360 30 DLRLLISRLEFHSLQIKS 47 (759)
Q Consensus 30 dl~~~i~~l~~~~~e~k~ 47 (759)
++...+.++..+..++..
T Consensus 85 ~~~~~l~~l~~el~~l~~ 102 (191)
T PF04156_consen 85 ELQQQLQQLQEELDQLQE 102 (191)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 334444444444444333
No 115
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=23.27 E-value=9.2e+02 Score=26.39 Aligned_cols=24 Identities=21% Similarity=0.235 Sum_probs=19.9
Q ss_pred chHHHHHHhhhccchhhhHhHHHH
Q 004360 29 PDLRLLISRLEFHSLQIKSKVQSY 52 (759)
Q Consensus 29 ~dl~~~i~~l~~~~~e~k~~v~~~ 52 (759)
+.|+.++..|+.+...++.+.+..
T Consensus 163 e~Lq~Klk~LEeEN~~LR~Ea~~L 186 (306)
T PF04849_consen 163 EALQEKLKSLEEENEQLRSEASQL 186 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 578899999999999998888743
No 116
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=23.25 E-value=7e+02 Score=24.30 Aligned_cols=124 Identities=18% Similarity=0.284 Sum_probs=61.8
Q ss_pred hhhhhhhhhhhhhhhcHHHHHhhhcCCCcc---hHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhHHHHHH
Q 004360 65 SLCNDTVSRTDEISTDLSDILGLISYRPID---KEVKEIIDEVSAKMKEAR----VKKELLELVRAIVEIGERLKGVKEA 137 (759)
Q Consensus 65 ~~~~~l~~~~~~l~~~l~~l~~~i~~~~~~---~~l~~~~~~~~~l~~el~----~~~~~~~~l~~l~~~~~~L~~~~~~ 137 (759)
..|+.+..+++++.+.++.+...-.. |+ ..++++..++-.-+..+. .-..-+.-.+.+-.+.+.|...-..
T Consensus 14 ~~~~~ll~~~~~~~~~l~~l~~~~~~--Vs~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Ld~itr~Ln~p~~s 91 (157)
T PF04136_consen 14 EECDQLLDQTDEILDQLDELQEQYNS--VSEKTNSLHEACEQLLEEQTRLEELAEEISEKLQYFEELDPITRRLNSPGSS 91 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHcCCCCc
Confidence 34666666666666666666655322 22 244444444332222221 1222233333444444444444333
Q ss_pred hhcCchhhhHHHHHHHHhHhhccC--CCCCCchhHHHhHHHHHHHHHHHHHHHHHHHHhhc
Q 004360 138 LRDGRLRFAAEELRELKKDLRVGD--ENASEPLVYGLLRKEWLVCFEEIQELLVKFVESAV 196 (759)
Q Consensus 138 l~~~~~~~Aa~~L~~l~~~l~~~~--~~~~~~~I~~~L~~~~~~l~~~i~~~L~~~~~~~v 196 (759)
+....|.. .|.++..+|.=+. +..+++.+|. .++..|..+-...+...+...+
T Consensus 92 V~~~~F~~---~L~~LD~cl~Fl~~h~~fkea~~Y~---~rf~q~ltRAl~lIk~y~~~~l 146 (157)
T PF04136_consen 92 VNSDSFKP---MLSRLDECLEFLEEHPNFKEAEVYL---IRFRQCLTRALTLIKNYVVNTL 146 (157)
T ss_pred ccchHHHH---HHHHHHHHHHHHHHhhhhhhhHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 44444544 4555555554332 3557888887 5667777666666666555433
No 117
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=22.86 E-value=1.6e+03 Score=29.20 Aligned_cols=133 Identities=12% Similarity=0.195 Sum_probs=68.1
Q ss_pred CcchHHHHHHhhhccchhhhHhHHHHHHhhhh---chHHHH--------hhhhhhhhhhhhhhhcHHHHHhhhcCCCcc-
Q 004360 27 TAPDLRLLISRLEFHSLQIKSKVQSYIASHHQ---DFASLF--------SLCNDTVSRTDEISTDLSDILGLISYRPID- 94 (759)
Q Consensus 27 ~~~dl~~~i~~l~~~~~e~k~~v~~~i~~~y~---~f~~~~--------~~~~~l~~~~~~l~~~l~~l~~~i~~~~~~- 94 (759)
+-++++..++++..+.++++++++++ ..... +-.+.+ ....++..+.+.+..+|.++.+.+-...++
T Consensus 779 ~v~~le~~l~~~~~~~~~~~~~~~~~-ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~k~~~d~ 857 (1293)
T KOG0996|consen 779 SVEKLERALSKMSDKARQHQEQLHEL-EERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAAVLKKVVDK 857 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcH
Confidence 45578888999999999999888633 22222 111111 112333344555555555555552221111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH---hhcCchhhhHHHHHHHHhHhhcc
Q 004360 95 KEVKEIIDEVSAKMKEARVKKELLELVRAIVEIGERLKGVKEA---LRDGRLRFAAEELRELKKDLRVG 160 (759)
Q Consensus 95 ~~l~~~~~~~~~l~~el~~~~~~~~~l~~l~~~~~~L~~~~~~---l~~~~~~~Aa~~L~~l~~~l~~~ 160 (759)
.++.+....+..+++|+...+.-..--+++.+++..++++... ..+..+..+-..++.+...+...
T Consensus 858 ~~l~~~~~~ie~l~kE~e~~qe~~~Kk~~i~~lq~~i~~i~~e~~q~qk~kv~~~~~~~~~l~~~i~k~ 926 (1293)
T KOG0996|consen 858 KRLKELEEQIEELKKEVEELQEKAAKKARIKELQNKIDEIGGEKVQAQKDKVEKINEQLDKLEADIAKL 926 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhchhhHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 2444444456667777766542221225566666666665433 23333455555555555544443
No 118
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=22.46 E-value=9.2e+02 Score=25.37 Aligned_cols=37 Identities=5% Similarity=0.056 Sum_probs=24.6
Q ss_pred HHHhhhhchHHHHhhhhhhhhhhhhhhhcHHHHHhhh
Q 004360 52 YIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLI 88 (759)
Q Consensus 52 ~i~~~y~~f~~~~~~~~~l~~~~~~l~~~l~~l~~~i 88 (759)
.+......+.+.-+....+-..+..|..+++.+..+.
T Consensus 32 ~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k~ 68 (264)
T PF06008_consen 32 QLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQEKA 68 (264)
T ss_pred HHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444566666777777777777777777777774
No 119
>KOG2273 consensus Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.36 E-value=6.2e+02 Score=29.47 Aligned_cols=119 Identities=16% Similarity=0.285 Sum_probs=57.5
Q ss_pred hHHHHHHhhhccchhhhHhHHHHHHhhhhchHHHHhhhhhhhhhhhhhhhcHHHHHhhhcCCCcchHHHHHHHHHHHHHH
Q 004360 30 DLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMK 109 (759)
Q Consensus 30 dl~~~i~~l~~~~~e~k~~v~~~i~~~y~~f~~~~~~~~~l~~~~~~l~~~l~~l~~~i~~~~~~~~l~~~~~~~~~l~~ 109 (759)
.+...+++|+.....+...|.. +..++.++...+..-+....++..+....+.+...+ ..+...+..++.+.+
T Consensus 278 e~~~~i~~l~~~l~~l~~~~~~-~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~l~~~~------~~~~~~~~~~~~~~e 350 (503)
T KOG2273|consen 278 EKKEKIDKLEQQLKKLSKQVQR-LVKRRRELASNLAELGKALAQLSALEGETDELSEAL------SGLAKVIESLSKLLE 350 (503)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHH------HHHHHHHHHHHHHHH
Confidence 4566666777666666666655 666666666665555555555544444332222221 123333334433333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCchhhhHHHHHHHHhHh
Q 004360 110 EARVKKELLELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDL 157 (759)
Q Consensus 110 el~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~~~~~Aa~~L~~l~~~l 157 (759)
+....+........+.++-+.++.++..++++.- |...+..++..+
T Consensus 351 ~~~~~~~~~~~~~~l~~~i~~~~~~k~~~~~r~~--~~~~~~~~~~~~ 396 (503)
T KOG2273|consen 351 KLTAEKDSKKLAEQLREYIRYLESVKSLFEQRSK--ALQKLQEAQREL 396 (503)
T ss_pred HhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 3312333333555555555555555555444322 444444444443
No 120
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=22.31 E-value=5.6e+02 Score=27.75 Aligned_cols=19 Identities=26% Similarity=0.499 Sum_probs=11.4
Q ss_pred cchHHHHHHHHHHHHHHHH
Q 004360 93 IDKEVKEIIDEVSAKMKEA 111 (759)
Q Consensus 93 ~~~~l~~~~~~~~~l~~el 111 (759)
|...++..|..+..-++||
T Consensus 40 Ir~rVrq~V~hVqaqEreL 58 (324)
T PF12126_consen 40 IRARVRQVVAHVQAQEREL 58 (324)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4456777777666544544
No 121
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=22.26 E-value=3.8e+02 Score=34.31 Aligned_cols=71 Identities=17% Similarity=0.222 Sum_probs=32.7
Q ss_pred HhhhhhhhhhhhhhhhcHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhHHHHH
Q 004360 64 FSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMKEARVKK-ELLELVRAIVEIGERLKGVKE 136 (759)
Q Consensus 64 ~~~~~~l~~~~~~l~~~l~~l~~~i~~~~~~~~l~~~~~~~~~l~~el~~~~-~~~~~l~~l~~~~~~L~~~~~ 136 (759)
....+.+...+++++++|.++...+.. +..+|.|..+.+....++|+-.| ....+....+++.+.+..+.+
T Consensus 1224 ~~~i~~l~~~~~~lr~~l~~~~e~L~~--~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~~keL~e~~~~ik~ 1295 (1758)
T KOG0994|consen 1224 AEDIAQLASATESLRRQLQALTEDLPQ--EEETLSDITNSLPLAGKDLESLQREFNGLLTTYKELREQLEKIKE 1295 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhh--hhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 444455556666666666666555432 33455555544433334443221 122233334444444444433
No 122
>KOG3758 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.48 E-value=1.5e+03 Score=27.30 Aligned_cols=133 Identities=11% Similarity=0.153 Sum_probs=69.1
Q ss_pred chHHHHhhhhhhhhhhhhhhhcHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh
Q 004360 59 DFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMKEARVKKELLELVRAIVEIGERLKGVKEAL 138 (759)
Q Consensus 59 ~f~~~~~~~~~l~~~~~~l~~~l~~l~~~i~~~~~~~~l~~~~~~~~~l~~el~~~~~~~~~l~~l~~~~~~L~~~~~~l 138 (759)
+|.+...+......++..++...+.+++.+++ ....-++.+.+...+++|.+..+.-...+.....=-+.-++-...+
T Consensus 72 ef~~i~~~l~~v~e~v~km~~t~~~l~s~ls~--~k~~t~dli~~t~~l~~e~~~le~r~kii~~Fl~~fqLs~~E~~~L 149 (655)
T KOG3758|consen 72 EFKEIKRRLDRVSEDVEKMANTCDKLKSNLST--SKATTQDLIQKTETLKEEAAQLELRKKIINAFLDNFQLSSEELDLL 149 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHH
Confidence 45555666677777888888888888888877 3445666777777777766655554433333322222222222233
Q ss_pred hc-Cchh----hhHHHHHHHHhHhhccCCCCCCchhHHHhHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 004360 139 RD-GRLR----FAAEELRELKKDLRVGDENASEPLVYGLLRKEWLVCFEEIQELLVKFVESAVRFEKE 201 (759)
Q Consensus 139 ~~-~~~~----~Aa~~L~~l~~~l~~~~~~~~~~~I~~~L~~~~~~l~~~i~~~L~~~~~~~v~~~~~ 201 (759)
.+ |.+. .++..+++....-+.+=..... .-..++...+.......++++.+|..+
T Consensus 150 ~~~g~i~e~FF~vL~rvqeIh~~~~~Ll~~~~~--------~Ag~eime~M~~~~E~a~erl~r~~qs 209 (655)
T KOG3758|consen 150 TESGPIDEDFFKVLDRVQEIHDNCRLLLQTPNQ--------TAGLEIMEKMALIQEGAYERLFRWSQS 209 (655)
T ss_pred hcCCcchHHHHHHHHHHHHHHHHHHHHHhccch--------hhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33 4432 3444444433332222100011 112234444455566666777777643
No 123
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=21.47 E-value=3.1e+02 Score=30.09 Aligned_cols=52 Identities=17% Similarity=0.222 Sum_probs=7.7
Q ss_pred HHHHHHhhhccchhhhHhHHHHHHhhhhchHHHHhhhhhhhhhhhhhhhcHHHHHhh
Q 004360 31 LRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGL 87 (759)
Q Consensus 31 l~~~i~~l~~~~~e~k~~v~~~i~~~y~~f~~~~~~~~~l~~~~~~l~~~l~~l~~~ 87 (759)
...++++|..+.++.+.+.- .|..|....+...+.....+++..++..++..
T Consensus 7 ~~~l~~~l~~~~~~~~~E~~-----~Y~~fL~~l~~~~~~~~~~~~~~~el~~le~E 58 (314)
T PF04111_consen 7 TDLLLEQLDKQLEQAEKERD-----TYQEFLKKLEEESDSEEDIEELEEELEKLEQE 58 (314)
T ss_dssp ----------------------------------------HH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Confidence 45678888888888887754 67888877774444445555555555554443
No 124
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=21.41 E-value=1.6e+03 Score=28.75 Aligned_cols=69 Identities=17% Similarity=0.258 Sum_probs=36.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhHHHHHHh--hcCchhhhHHHHHHHHhHhhccC
Q 004360 93 IDKEVKEIIDEVSAKMKEARVKKELL-ELVRAIVEIGERLKGVKEAL--RDGRLRFAAEELRELKKDLRVGD 161 (759)
Q Consensus 93 ~~~~l~~~~~~~~~l~~el~~~~~~~-~~l~~l~~~~~~L~~~~~~l--~~~~~~~Aa~~L~~l~~~l~~~~ 161 (759)
+.+++.....++..|++|++..+... .+-+....+.+.+.+.++.. -++.+..-.+..+.-..-|+.+.
T Consensus 392 ~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk 463 (1074)
T KOG0250|consen 392 LGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLK 463 (1074)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456666666777777777655543 33345556666666555544 23334444444444444444443
No 125
>PF14164 YqzH: YqzH-like protein
Probab=21.29 E-value=77 Score=26.27 Aligned_cols=35 Identities=9% Similarity=0.166 Sum_probs=25.2
Q ss_pred CCCCCCCCcchHHHHHHhhhccchhh-hHhHHHHHH
Q 004360 20 TDQTAPLTAPDLRLLISRLEFHSLQI-KSKVQSYIA 54 (759)
Q Consensus 20 ~~~~~~l~~~dl~~~i~~l~~~~~e~-k~~v~~~i~ 54 (759)
++.+.|||+.|.+.+..++..+..+- ..++|+.|+
T Consensus 20 d~~~~pls~~E~~~L~~~i~~~~~~~~~~Dl~eiVe 55 (64)
T PF14164_consen 20 DVECMPLSDEEWEELCKHIQERKNEEPDEDLHEIVE 55 (64)
T ss_pred cccCCCCCHHHHHHHHHHHHHHHhcCCCchHHHHHH
Confidence 46889999999999888887665443 336666554
No 126
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=21.24 E-value=1.8e+02 Score=31.56 Aligned_cols=97 Identities=10% Similarity=0.144 Sum_probs=58.0
Q ss_pred hhchHHH------HhhhhhhhhhhhhhhhcHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004360 57 HQDFASL------FSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMKEARVKKELLELVRAIVEIGER 130 (759)
Q Consensus 57 y~~f~~~------~~~~~~l~~~~~~l~~~l~~l~~~i~~~~~~~~l~~~~~~~~~l~~el~~~~~~~~~l~~l~~~~~~ 130 (759)
|..|.|. ++..+.+......+..+|+.+++-- +|..-+++..-++...+++|+..-.+.+..=+.=+.+..+
T Consensus 209 ngvfdp~~qaevq~~Lvs~Le~eL~~iqaqL~tvks~m--~~~nPqi~~LkarieSlrkql~qe~q~isag~~~~sl~~q 286 (372)
T COG3524 209 NGVFDPKAQAEVQMSLVSKLEDELIVIQAQLDTVKSVM--NPENPQIPGLKARIESLRKQLLQEKQAISAGGSSQSLSNQ 286 (372)
T ss_pred cCccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCCcchhHHHHHHHHHHHHHHHHHHhcCCCCccchhHH
Confidence 3456655 3445555566667788888888874 1345578888888888888887544433222222233334
Q ss_pred hHHHH-----HHhhcCchhhhHHHHHHHHh
Q 004360 131 LKGVK-----EALRDGRLRFAAEELRELKK 155 (759)
Q Consensus 131 L~~~~-----~~l~~~~~~~Aa~~L~~l~~ 155 (759)
..+++ ..+.++.|..|+..|+.++-
T Consensus 287 aAefq~l~lE~~fAekay~AAl~SlEsAri 316 (372)
T COG3524 287 AAEFQRLYLENTFAEKAYAAALTSLESARI 316 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44433 33566677777777775543
No 127
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=21.13 E-value=8.9e+02 Score=30.02 Aligned_cols=42 Identities=17% Similarity=0.165 Sum_probs=33.2
Q ss_pred hhHHHHHHHHHHhhhhhhcccccchHhHHhHHHHHHHHHHhH
Q 004360 625 SMCTVLESVFSRITRDILLLDDMAAEETLQLQRLIHLMLENL 666 (759)
Q Consensus 625 ~ig~Ll~~~~~~ii~~Il~l~DIs~~es~~L~~l~~~~~~~l 666 (759)
-||.+...++...+..|+.+..+++.-+.+|+.=|.-+.+-+
T Consensus 680 wl~~va~~~~~~~~~~i~~i~~l~~~~~~QL~~Di~Yl~nVl 721 (766)
T PF10191_consen 680 WLGKVARATCALYLEQILEIPELSESGAKQLATDIDYLSNVL 721 (766)
T ss_pred HHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHH
Confidence 367788888888899999999999999999988777643333
No 128
>PRK11281 hypothetical protein; Provisional
Probab=20.99 E-value=4.8e+02 Score=33.76 Aligned_cols=17 Identities=18% Similarity=0.176 Sum_probs=13.3
Q ss_pred CCCcchHHHHHHhhhcc
Q 004360 25 PLTAPDLRLLISRLEFH 41 (759)
Q Consensus 25 ~l~~~dl~~~i~~l~~~ 41 (759)
+-++++++..++.+..+
T Consensus 35 ~p~~~~iq~~l~~~~~~ 51 (1113)
T PRK11281 35 LPTEADVQAQLDALNKQ 51 (1113)
T ss_pred CCCHHHHHHHHHHhhcC
Confidence 45677899999998775
No 129
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=20.95 E-value=1.3e+03 Score=27.26 Aligned_cols=10 Identities=30% Similarity=0.561 Sum_probs=4.5
Q ss_pred hhhhccccce
Q 004360 382 RLSNFAENVE 391 (759)
Q Consensus 382 ~L~~~v~~i~ 391 (759)
.|..|+..++
T Consensus 442 eL~~yi~~Le 451 (546)
T PF07888_consen 442 ELLEYIERLE 451 (546)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 130
>PHA02562 46 endonuclease subunit; Provisional
Probab=20.94 E-value=5.1e+02 Score=30.36 Aligned_cols=17 Identities=12% Similarity=0.145 Sum_probs=6.6
Q ss_pred HHHHHHhhhccchhhhH
Q 004360 31 LRLLISRLEFHSLQIKS 47 (759)
Q Consensus 31 l~~~i~~l~~~~~e~k~ 47 (759)
+...+.++...+...++
T Consensus 260 l~~~~~~~~~~l~~~~~ 276 (562)
T PHA02562 260 LNTAAAKIKSKIEQFQK 276 (562)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333334444433333
No 131
>PRK02224 chromosome segregation protein; Provisional
Probab=20.92 E-value=1.3e+03 Score=28.80 Aligned_cols=21 Identities=19% Similarity=0.229 Sum_probs=13.1
Q ss_pred hHHHHHHhhhccchhhhHhHH
Q 004360 30 DLRLLISRLEFHSLQIKSKVQ 50 (759)
Q Consensus 30 dl~~~i~~l~~~~~e~k~~v~ 50 (759)
++...++++..++.++..++-
T Consensus 472 ~~~~~~~~~~~~~~~le~~l~ 492 (880)
T PRK02224 472 EDRERVEELEAELEDLEEEVE 492 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666554
No 132
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=20.88 E-value=1.8e+02 Score=24.94 Aligned_cols=28 Identities=14% Similarity=0.331 Sum_probs=23.3
Q ss_pred hHHHHHHhhhccchhhhHhHHHHHHhhhh
Q 004360 30 DLRLLISRLEFHSLQIKSKVQSYIASHHQ 58 (759)
Q Consensus 30 dl~~~i~~l~~~~~e~k~~v~~~i~~~y~ 58 (759)
+....|++|..+...+|-+|| ++..+-.
T Consensus 4 Eqe~~i~~L~KENF~LKLrI~-fLee~l~ 31 (75)
T PF07989_consen 4 EQEEQIDKLKKENFNLKLRIY-FLEERLQ 31 (75)
T ss_pred HHHHHHHHHHHhhhhHHHHHH-HHHHHHH
Confidence 567889999999999999999 6666554
No 133
>KOG3197 consensus Predicted hydrolases of HD superfamily [General function prediction only]
Probab=20.78 E-value=3.5e+02 Score=27.30 Aligned_cols=100 Identities=13% Similarity=0.301 Sum_probs=69.9
Q ss_pred HHHHHHHHhhhhhhcccccchHh-----HHhHHHHHHHHH-----HhHHHHHHHHHHhhcCCCCCCCCCCCchhhhhhHH
Q 004360 629 VLESVFSRITRDILLLDDMAAEE-----TLQLQRLIHLML-----ENLSSLLESLAAVNQKGKTEGDFARPLDDLIPSLC 698 (759)
Q Consensus 629 Ll~~~~~~ii~~Il~l~DIs~~e-----s~~L~~l~~~~~-----~~l~~lF~~~~~~~~~~~~~~~~~~~~~~~v~~W~ 698 (759)
||--++.-++.+|--.+-||-+| +..+..+|+.+. .++-.||..... + ...-+.||+...
T Consensus 85 lVHD~AEslVgditP~~~vsKeeK~rre~eamk~ic~~l~~~~~akEi~elw~eYE~----~------ss~Eak~VKdlD 154 (210)
T KOG3197|consen 85 LVHDIAESLVGDITPSDGVSKEEKHRREFEAMKYICQLLIGELRAKEITELWLEYEE----A------SSLEAKFVKDLD 154 (210)
T ss_pred HHHHHHHHHhCCCCCCCCccHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHh----c------CchhHHHHHhhH
Confidence 77788888999888888887776 566788888764 456677776532 1 113368999999
Q ss_pred HHHHHHHHhcC-----cchhhhhh-hccCceeecccchHHHHHHHHHHhcC
Q 004360 699 KFRKLAELLDM-----PLRSITAA-WESGELLSCGFTLSEIEDFIKAIFAD 743 (759)
Q Consensus 699 K~~~L~~iL~~-----sL~dI~~~-w~~G~ll~~~fs~~Ev~~LIrAlF~d 743 (759)
||--+.+.++= -.++..+- |..| .|..+|++.+..-|-++
T Consensus 155 K~eMi~QafEYE~~~ng~~~lq~F~st~g-----~~~~~~vk~w~~el~~~ 200 (210)
T KOG3197|consen 155 KFEMIVQAFEYEKKHNGEKDLQQFFSTVG-----KFKTPEVKKWVSELLEE 200 (210)
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHHhcc-----cccChHHHHHHHHHHHH
Confidence 99888877642 23344322 4433 37889999999988764
No 134
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=20.78 E-value=2.7e+02 Score=34.23 Aligned_cols=27 Identities=22% Similarity=0.384 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHh
Q 004360 112 RVKKELLELVRAIVEIGERLKGVKEAL 138 (759)
Q Consensus 112 ~~~~~~~~~l~~l~~~~~~L~~~~~~l 138 (759)
++.+++-.+-.+++.+..+|++++.-+
T Consensus 636 ~~~~EL~~~~~~l~~l~~si~~lk~k~ 662 (717)
T PF10168_consen 636 EFKKELERMKDQLQDLKASIEQLKKKL 662 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444555555555554433
No 135
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=20.50 E-value=1.3e+03 Score=28.41 Aligned_cols=101 Identities=17% Similarity=0.156 Sum_probs=61.4
Q ss_pred HHHhhhh---chHHHHhhhhhhhhhhhhhhhcHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 004360 52 YIASHHQ---DFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMKEARVKKE-LLELVRAIVEI 127 (759)
Q Consensus 52 ~i~~~y~---~f~~~~~~~~~l~~~~~~l~~~l~~l~~~i~~~~~~~~l~~~~~~~~~l~~el~~~~~-~~~~l~~l~~~ 127 (759)
.+...|. +.+.+.+.|---.-+++-...++..+.-++|. +..+...+++ ++..+++ ....-..+.++
T Consensus 325 ~LE~D~Q~A~DhLnLV~~AlR~QEKI~RYQ~Dl~Elt~RLEE---Q~~VVeeA~e------~~~e~e~r~e~~E~EvD~l 395 (1480)
T COG3096 325 DLEADYQAASDHLNLVQTALRQQEKIERYQADLEELTIRLEE---QNEVVEEANE------RQEENEARAEAAELEVDEL 395 (1480)
T ss_pred hhhhhHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH---HHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
Confidence 4444443 33344444444445666677788888888755 4444433333 2222222 12233457778
Q ss_pred HHhhHHHHHHhhcC-----chhhhHHHHHHHHhHhhccC
Q 004360 128 GERLKGVKEALRDG-----RLRFAAEELRELKKDLRVGD 161 (759)
Q Consensus 128 ~~~L~~~~~~l~~~-----~~~~Aa~~L~~l~~~l~~~~ 161 (759)
...|..++++++-. +|..|+..|++++..+....
T Consensus 396 ksQLADYQQALD~QQTRAlQYQQAi~ALekAk~Lc~l~d 434 (1480)
T COG3096 396 KSQLADYQQALDVQQTRAIQYQQAIAALERAKELCHLPD 434 (1480)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 88888888887654 47899999999998877665
No 136
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=20.21 E-value=1.5e+02 Score=23.92 Aligned_cols=16 Identities=19% Similarity=0.478 Sum_probs=7.9
Q ss_pred hhhhhhhcHHHHHhhh
Q 004360 73 RTDEISTDLSDILGLI 88 (759)
Q Consensus 73 ~~~~l~~~l~~l~~~i 88 (759)
+++.|+.+++.|.++|
T Consensus 4 kid~Ls~dVq~L~~kv 19 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKV 19 (56)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4445555555555543
No 137
>PRK08655 prephenate dehydrogenase; Provisional
Probab=20.13 E-value=1e+03 Score=27.17 Aligned_cols=86 Identities=12% Similarity=0.101 Sum_probs=57.8
Q ss_pred HHHHHHHHHH----HHHHHHH-HHHHHHHHHHHHHHHHHhhHHHHHHhhcCchhhhHHHHHHHHhHhhccC-CCCCCchh
Q 004360 96 EVKEIIDEVS----AKMKEAR-VKKELLELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVGD-ENASEPLV 169 (759)
Q Consensus 96 ~l~~~~~~~~----~l~~el~-~~~~~~~~l~~l~~~~~~L~~~~~~l~~~~~~~Aa~~L~~l~~~l~~~~-~~~~~~~I 169 (759)
+..+.++++. .+=+++. .|. .+++.+..+-+.|.+++.++.+++...-.+.+++....+...+ ...++.++
T Consensus 208 d~~~~~tRIa~~~p~lw~dI~~~N~---~~~~~l~~~~~~l~~l~~~l~~~D~~~l~~~~~~a~~~~~~~~~~~~~s~~~ 284 (437)
T PRK08655 208 LMIDIIGRILGQNPYLYASIQMNNP---QIPEIHETFIKECEELSELVKNGDREEFVERMKEAAKHFGDTERALGRSDKA 284 (437)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhCH---HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 3334466664 3445554 344 3678888999999999999999999988888998888887553 22234445
Q ss_pred HHHhHHHHHHHHHHH
Q 004360 170 YGLLRKEWLVCFEEI 184 (759)
Q Consensus 170 ~~~L~~~~~~l~~~i 184 (759)
+..+..+...+...+
T Consensus 285 i~~~~~~~~~~~~~~ 299 (437)
T PRK08655 285 IYALNQEFEKLLKSI 299 (437)
T ss_pred HHHHHHHHHHHHHhh
Confidence 555666655555433
No 138
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=20.05 E-value=3.2e+02 Score=30.30 Aligned_cols=81 Identities=11% Similarity=0.096 Sum_probs=45.3
Q ss_pred hHHHHHHhhhccchhhhHhHHHHHHhhhhchHH------HHhhhhhhhhhhhhhhhcHHHHHhhhcCCCcchHHHHHHHH
Q 004360 30 DLRLLISRLEFHSLQIKSKVQSYIASHHQDFAS------LFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDE 103 (759)
Q Consensus 30 dl~~~i~~l~~~~~e~k~~v~~~i~~~y~~f~~------~~~~~~~l~~~~~~l~~~l~~l~~~i~~~~~~~~l~~~~~~ 103 (759)
-++..+.+++.+..+...++.++=+++- -+.+ ..+..+++..+..++..++..+.....+ ..-+++..-.+
T Consensus 174 fl~~ql~~~~~~l~~ae~~l~~fr~~~~-~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~--~~P~v~~l~~~ 250 (362)
T TIGR01010 174 FAENEVKEAEQRLNATKAELLKYQIKNK-VFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPE--QNPQVPSLQAR 250 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC--CCCchHHHHHH
Confidence 4677777778888888877776655543 2222 2334555556666666666665544322 12244444455
Q ss_pred HHHHHHHHHH
Q 004360 104 VSAKMKEARV 113 (759)
Q Consensus 104 ~~~l~~el~~ 113 (759)
+..++++++.
T Consensus 251 i~~l~~~i~~ 260 (362)
T TIGR01010 251 IKSLRKQIDE 260 (362)
T ss_pred HHHHHHHHHH
Confidence 5555555543
Done!