Query 004360
Match_columns 759
No_of_seqs 167 out of 218
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 22:45:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004360.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004360hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3k8p_C DSL1, KLLA0C02695P; int 100.0 1.9E-31 6.3E-36 278.3 4.3 251 451-756 96-350 (357)
2 3hr0_A COG4; conserved oligome 88.7 0.32 1.1E-05 50.3 4.5 134 599-755 127-262 (263)
3 2fji_1 Exocyst complex compone 87.3 1.1 3.8E-05 48.9 8.0 248 450-719 52-330 (399)
4 2d2s_A Exocyst complex compone 81.4 8.2 0.00028 38.9 10.8 100 122-241 13-114 (235)
5 3etv_A Protein transport prote 75.0 7.5 0.00026 41.0 8.2 217 109-334 60-304 (355)
6 2v66_B Nuclear distribution pr 68.7 11 0.00038 33.4 6.7 55 30-84 7-61 (111)
7 2pih_A Protein YMCA; regulate 67.4 31 0.0011 32.1 10.0 110 77-200 9-121 (151)
8 3csx_A Putative uncharacterize 62.7 10 0.00036 31.5 4.9 65 21-85 10-77 (81)
9 3ghg_A Fibrinogen alpha chain; 52.8 34 0.0012 38.0 8.3 30 106-135 114-144 (562)
10 3ghg_A Fibrinogen alpha chain; 50.4 54 0.0019 36.4 9.4 20 39-59 63-82 (562)
11 2l5g_B Putative uncharacterize 47.9 13 0.00044 26.9 2.7 27 25-51 1-27 (42)
12 3ol1_A Vimentin; structural ge 42.5 77 0.0026 28.2 7.8 87 30-130 24-116 (119)
13 2v71_A Nuclear distribution pr 40.4 46 0.0016 32.3 6.3 21 30-50 60-80 (189)
14 2js5_A Uncharacterized protein 39.8 42 0.0014 27.2 4.9 58 28-85 5-65 (71)
15 3na7_A HP0958; flagellar bioge 26.3 4.9E+02 0.017 25.8 12.8 172 30-208 15-197 (256)
16 1xaw_A Occludin; coiled-coil, 26.0 3.5E+02 0.012 24.8 9.3 62 42-109 43-104 (140)
17 4abx_A DNA repair protein RECN 25.1 1.9E+02 0.0066 27.2 7.9 123 29-160 35-162 (175)
18 1jcd_A Major outer membrane li 22.2 84 0.0029 23.9 3.6 10 123-132 40-49 (52)
19 2jqq_A Conserved oligomeric go 21.5 5.5E+02 0.019 24.7 10.9 32 165-197 154-185 (204)
20 3fxd_A Protein ICMQ; helix bun 21.4 2.1E+02 0.0073 21.9 5.6 43 145-189 9-51 (57)
21 1hlb_A Hemoglobin (deoxy); oxy 21.0 2.1E+02 0.0073 25.9 7.2 55 16-70 3-60 (158)
22 2b0h_A Talin-1; vinculin, heli 20.8 4.8E+02 0.016 23.7 9.5 75 30-104 13-87 (137)
23 2oee_A UPF0342 protein YHEA; M 20.4 3.2E+02 0.011 23.6 7.9 104 79-196 7-112 (117)
24 2d4y_A HAP1, flagellar HOOK-as 20.2 2.1E+02 0.0072 31.3 8.1 20 47-66 40-59 (463)
No 1
>3k8p_C DSL1, KLLA0C02695P; intracellular trafficking, DSL1 complex, multisubunit tethering complex, snare proteins; 2.60A {Kluyveromyces lactis}
Probab=99.96 E-value=1.9e-31 Score=278.29 Aligned_cols=251 Identities=18% Similarity=0.231 Sum_probs=171.9
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhh-cchhhHHHHhhhhhhhhh-hhhhcccchhhhhccCcceeeeeecCcchhhhhhhhh
Q 004360 451 CVVTKAASQLMKLVHQILQDICL-SSTRVAFEFYHAARDAIL-LYEAIVPVKLERQLEGINQVAVLMHNDCLYLSQEILG 528 (759)
Q Consensus 451 c~IS~~~~~l~~Li~~~L~ea~~-ss~~~a~~L~~~~~~i~~-Ly~a~~P~~~~~~l~~~p~~a~l~yNDc~YLa~~L~~ 528 (759)
..||+.|+.+..++......+.. +...+. +-|..-.+++. .|-|+.-.+| ..- -.||||--|+-.+=..
T Consensus 96 i~vt~lp~~f~~i~~~f~~~~~~~~~~~~~-~~~~yK~NlLqT~f~am~~~~~-~~W-------wqly~D~ryi~~~~~~ 166 (357)
T 3k8p_C 96 IQVSVFVQSAAKVFTEFEQGCDTIGRSKVE-SIYLYKFNLLQTAFFAMVSEKV-NDW-------TQLYKDVRYLYTENPK 166 (357)
T ss_dssp EEEETHHHHHHHHHHHHHHHHHTTTTTSSH-HHHHHHHHHHHHHHHHHHHHHC-SCH-------HHHHHHHHHHHHHCTT
T ss_pred hhhhHhHHHHHHHHHHHHHHHHHhcchhHH-HHHHHHHHHHHHHHHHHHHHhh-hHH-------HHHHHHHHHHHhcChh
Confidence 88999999999999999887743 233333 44544444443 3777777776 322 7899999999776111
Q ss_pred ceeeeccCCCcccchh-hhhccccchhhchHHHHHhHhHHhhhhhhhhhhccCccccchhhhhhccccccceeeeeeeee
Q 004360 529 FAFEYHSDFPSSIKEH-AVFADMAPRFHLMAEEILQRQIQIVIFNLREALDGADGFQNTHQIQQFESAKFSIEQVVFILE 607 (759)
Q Consensus 529 l~~~~~~~l~~~~~~~-~~f~d~~~~~r~~~~~~~~~qi~~~~~~l~~~L~~a~gf~~~~~~~~~~~~~~av~q~~~~L~ 607 (759)
| + .++++ ..|.+.--. +-+....+-|+.| |.++-+...+=+.-.. +++ -|-
T Consensus 167 l---~------rl~EL~~~~le~~l~---~~~k~v~~lv~~q---L~~l~~nE~~p~W~~t----------~~~---LlP 218 (357)
T 3k8p_C 167 L---L------QLMELNSRRLDLNLN---LIKKTIYKLVNDQ---LQELKDNERTPDWDIT----------ISS---LLP 218 (357)
T ss_dssp C---H------HHHHHHHHHHHHHHH---HHHHHHHHHHHHH---HHHHHHTSSSCCCHHH----------HHT---HHH
T ss_pred h---H------HHHHHHHHHHHHHHH---HHHHHHHHHHHHH---HHHHHhccCCCCHHHH----------HHH---HHH
Confidence 1 0 01111 122222110 0011112222222 2333223222221100 111 122
Q ss_pred eeeeccccccCccccchhhHHHHHHHH-HHhhhhhhcccccchHhHHhHHHHHHHHHHhHHHHHHHHHHhhcCCCCCCCC
Q 004360 608 KVHIIWEPLLLPSTYNRSMCTVLESVF-SRITRDILLLDDMAAEETLQLQRLIHLMLENLSSLLESLAAVNQKGKTEGDF 686 (759)
Q Consensus 608 ~L~~~W~~vLp~~vy~~~ig~Ll~~~~-~~ii~~Il~l~DIs~~es~~L~~l~~~~~~~l~~lF~~~~~~~~~~~~~~~~ 686 (759)
-+.+.|.+.|.+....+.++.|+|+++ ++||++|++++|||+++|++|+.||+.+.+. ..+ |..
T Consensus 219 ~i~~~i~~pl~k~~~~~~l~~lvnfi~~~~II~dIl~LeDISE~eS~~La~Li~~l~~l-~~l--P~l------------ 283 (357)
T 3k8p_C 219 YLKKTALPTLYKLEDNTILVALIRYIVHDLVIDNILHWRVISEKSSENLSEFIMLLLSG-LEI--PRL------------ 283 (357)
T ss_dssp HHHHTHHHHHHTTCCHHHHHHHHHHHHHTTHHHHHHTSSCCCHHHHHHHHHHHHHHHHH-TCC--GGG------------
T ss_pred HHHHHhhhHhhcchHHHHHHHHHHHHHhhHHHHHHcCcccCCHHHHHHHHHHHHHHHcC-CCC--ccc------------
Confidence 234456777777889999999999999 9999999999999999999999999985333 222 210
Q ss_pred CCCchhhhhhHHHHHHHHHHhcCcchhhhhhhccCceeecccchHHHHHHHHHHhcCCchhhhhhhcccc
Q 004360 687 ARPLDDLIPSLCKFRKLAELLDMPLRSITAAWESGELLSCGFTLSEIEDFIKAIFADSTLRKECLWRIEN 756 (759)
Q Consensus 687 ~~~~~~~v~~W~K~~~L~~iL~~sL~dI~~~w~~G~ll~~~fs~~Ev~~LIrAlF~ds~~R~~~l~~I~~ 756 (759)
..++.|||+|.||+||++||++||+||++||++|++ + +|+++||++||||||+|||+|+++|++|++
T Consensus 284 -~~i~~Yv~~W~Kf~~L~~IL~ssLkDI~~lW~eGeL-~-~FstdEVv~LIrALFaDT~~Rr~aI~eIre 350 (357)
T 3k8p_C 284 -NLIETYRHSREKLGILSKILTAHLKDILEMFYEGEF-F-LFETDEIVQWIILLFADTPTRRDCIDEIRR 350 (357)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHTCCHHHHHHHHHTTGG-G-GSCHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred -ccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCc-c-eecHHHHHHHHHHHCcCCHHHHHHHHHHHH
Confidence 135899999999999999999999999999999998 4 999999999999999999999999999986
No 2
>3hr0_A COG4; conserved oligomeric golgi complex, intracellular trafficking, vesicle tethering, multisubunit tethering complex, exocyst; 1.90A {Homo sapiens}
Probab=88.71 E-value=0.32 Score=50.25 Aligned_cols=134 Identities=16% Similarity=0.266 Sum_probs=97.1
Q ss_pred eeeeeeeeeeeeeccccccCccccchhhHHHHHHHHHHhhhhhhcccccchHhHHhHHHHHHHHHHhHHHHHHHHHHhhc
Q 004360 599 IEQVVFILEKVHIIWEPLLLPSTYNRSMCTVLESVFSRITRDILLLDDMAAEETLQLQRLIHLMLENLSSLLESLAAVNQ 678 (759)
Q Consensus 599 v~q~~~~L~~L~~~W~~vLp~~vy~~~ig~Ll~~~~~~ii~~Il~l~DIs~~es~~L~~l~~~~~~~l~~lF~~~~~~~~ 678 (759)
+.+.+..++.+=..|+++|.++.|.+.++.+++.++..+=..|+. .-+++-=|.+|-+=++.+++-+ . .
T Consensus 127 ~~~F~~~w~~ll~p~k~~Lt~~~y~~Ll~~~~~~la~~lE~~i~~-~~fn~lGal~LdrDvr~li~~~----~------~ 195 (263)
T 3hr0_A 127 VQQFILNLEQQMAEFKASLSPVIYDSLTGLMTSLVAVELEKVVLK-STFNRLGGLQFDKELRSLIAYL----T------T 195 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTT-CCBCHHHHHHHHHHHHHHHHHH----H------T
T ss_pred HHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHh-CCcCchhHHHHHHHHHHHHHHH----H------h
Confidence 566667777777778889999999999999999988877777776 4577777888766665543332 1 1
Q ss_pred CCCCCCCCCCCchhhhhhHHHHHHHHHHhcC-cchhhhhhhccCc-eeecccchHHHHHHHHHHhcCCchhhhhhhccc
Q 004360 679 KGKTEGDFARPLDDLIPSLCKFRKLAELLDM-PLRSITAAWESGE-LLSCGFTLSEIEDFIKAIFADSTLRKECLWRIE 755 (759)
Q Consensus 679 ~~~~~~~~~~~~~~~v~~W~K~~~L~~iL~~-sL~dI~~~w~~G~-ll~~~fs~~Ev~~LIrAlF~ds~~R~~~l~~I~ 755 (759)
.+. ...-....|+.++..+|+. +..|+.+.|.++. ...-.+|++|++. ++---.|.|.+.|++++
T Consensus 196 ~~~---------~~lRekF~RL~QI~~lLnle~~eev~d~~~~~~~~~~W~Ls~~E~r~---il~lRvDf~~e~I~~l~ 262 (263)
T 3hr0_A 196 VTT---------WTIRDKFARLSQMATILNLERVTEILDYWGPNSGPLTWRLTPAEVRQ---VLALRIDFRSEDIKRLR 262 (263)
T ss_dssp TSC---------TTHHHHTHHHHHHHHHHTCSSGGGGGGTSGGGGTTCCCCSCHHHHHH---HHTTBTTSCHHHHHHCC
T ss_pred ccc---------hhhhHHHHHHHHHHHHHcCCChHHHHHHhcccCCCccccCCHHHHHH---HHHhhccCCHHHHHhcc
Confidence 011 1234578899999999998 8999999997632 2234699999975 45566777888777764
No 3
>2fji_1 Exocyst complex component SEC6; exocytosis, tandem helical bundles, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=87.29 E-value=1.1 Score=48.94 Aligned_cols=248 Identities=10% Similarity=0.147 Sum_probs=141.1
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhcchh-hHHH----Hhhhhhhhhhhhhhcccchhhhhc----------c------Cc
Q 004360 450 RCVVTKAASQLMKLVHQILQDICLSSTR-VAFE----FYHAARDAILLYEAIVPVKLERQL----------E------GI 508 (759)
Q Consensus 450 ~c~IS~~~~~l~~Li~~~L~ea~~ss~~-~a~~----L~~~~~~i~~Ly~a~~P~~~~~~l----------~------~~ 508 (759)
-+.+|..|..+..++.+.+.-|..++.. +..+ .+......+..|+..+-.+..+.+ + +.
T Consensus 52 g~~~t~~~~dvfqml~eql~~a~~~~~~~l~~~v~~~~~~~L~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (399)
T 2fji_1 52 GLLFLDGTKTCFQMFTQQVEVAAGTNQAKILVGVVERFSDLLTKRQKNWISKISEEIKKQINYNHKYDIDPESITPEDEC 131 (399)
T ss_dssp SCEECHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTGGGSCCTTTCC
T ss_pred CCeeCCchHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCccccc
Confidence 4668889999999999999887654322 2221 111111222222222212111111 0 00
Q ss_pred -c---eeeeeecCcchhhhhhhhhceeeeccCCCcccch--hhhhccccchhhchHHHHHhHhHHhhhhhhhhhhccCcc
Q 004360 509 -N---QVAVLMHNDCLYLSQEILGFAFEYHSDFPSSIKE--HAVFADMAPRFHLMAEEILQRQIQIVIFNLREALDGADG 582 (759)
Q Consensus 509 -p---~~a~l~yNDc~YLa~~L~~l~~~~~~~l~~~~~~--~~~f~d~~~~~r~~~~~~~~~qi~~~~~~l~~~L~~a~g 582 (759)
| ....-+-|||...+..+..+...|.....+...+ ...|-++...|..++..+++.-++.....|+..++..
T Consensus 132 ~~~~~e~liA~~Nn~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~f~~l~~~~~~~L~~~if~dl~p~~~~l-- 209 (399)
T 2fji_1 132 PGGLVEYLIAVSNDQMKAADYAVAISSKYGKLVSKVYEKQITNHLEGTLDGFAEVAQCSSLGLITLMFDDLRKPYQEI-- 209 (399)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTHHHHTTT--
T ss_pred cccHHHhhhhhhccHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 1 1123456999999888888766655333322111 1245566667777777777766665555566555432
Q ss_pred ccchhhhhhccccccceeeeeeeeeeeeeccccccCccccchhhHHHHHHHHHHhhhhhhcccccc---hHhHHhHHHHH
Q 004360 583 FQNTHQIQQFESAKFSIEQVVFILEKVHIIWEPLLLPSTYNRSMCTVLESVFSRITRDILLLDDMA---AEETLQLQRLI 659 (759)
Q Consensus 583 f~~~~~~~~~~~~~~av~q~~~~L~~L~~~W~~vLp~~vy~~~ig~Ll~~~~~~ii~~Il~l~DIs---~~es~~L~~l~ 659 (759)
|.. .=|+.- ++++.+..++.....-++.|.++.|...+..+.+.++.+.+..++.-.-+. ..-+.++..
T Consensus 210 ft~----~W~~~~--~v~~i~~ti~dy~~d~~~~L~~~~~~~l~~~~~~~~v~~Yl~~l~~~~~~~~~~~~~~~~l~~-- 281 (399)
T 2fji_1 210 FSK----TWYMGS--QAQQIADTLDEYLLDIKPQMNSVLFVNFIDNVIGETIIKFLTALSFEHSFKNKNNKFLEAMKR-- 281 (399)
T ss_dssp TSG----GGTTCC--HHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHGGGGCCCCCCGGGHHHHHHHH--
T ss_pred CCc----hhcCCc--HHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHH--
Confidence 111 111111 477777777777776778899999999999999999999999998622344 433444433
Q ss_pred HHHHHhHHHHHHHHHHhhcCCCCCCCCCCCchhhhhhHHHHHHHHHHhcC-cchhhhhhhc
Q 004360 660 HLMLENLSSLLESLAAVNQKGKTEGDFARPLDDLIPSLCKFRKLAELLDM-PLRSITAAWE 719 (759)
Q Consensus 660 ~~~~~~l~~lF~~~~~~~~~~~~~~~~~~~~~~~v~~W~K~~~L~~iL~~-sL~dI~~~w~ 719 (759)
. .+.+..+|..... + ....+.-....|..+..|.+ |.. +...|..-|.
T Consensus 282 -D-~~~l~~~f~~~~~----~-----~~~~~~~v~~~~~~l~~l~~-L~~d~~~~i~~~~~ 330 (399)
T 2fji_1 282 -D-FEIFYQLFVKVLD----G-----NESKDTLITQNFTVMEFFMD-LSCEPIDSILDIWQ 330 (399)
T ss_dssp -H-HHHHHHHHHHHTT----T-----CTTHHHHHHHHHHHHHHHHH-HHHSCGGGHHHHHH
T ss_pred -H-HHHHHHHHHHhcc----c-----cchhhHHHHHHHHHHHHHHH-hcCCcHHHHHHHHH
Confidence 2 3456677765421 0 00000012457788888888 864 3356666663
No 4
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=81.44 E-value=8.2 Score=38.91 Aligned_cols=100 Identities=20% Similarity=0.207 Sum_probs=76.8
Q ss_pred HHHHHHHHhhHHHHHHhhcCchhhhHHHHHHHHhHhhccCCC--CCCchhHHHhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 004360 122 RAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVGDEN--ASEPLVYGLLRKEWLVCFEEIQELLVKFVESAVRFE 199 (759)
Q Consensus 122 ~~l~~~~~~L~~~~~~l~~~~~~~Aa~~L~~l~~~l~~~~~~--~~~~~I~~~L~~~~~~l~~~i~~~L~~~~~~~v~~~ 199 (759)
+.++.+...+++.+-.+.+.+|.+|+..+++.++.+...+.. ..+......++.++.+.+..+.++|.+.... .
T Consensus 13 ~~~~wl~~~~deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~--~-- 88 (235)
T 2d2s_A 13 QRLKFLDEGVEEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS--S-- 88 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT--C--
T ss_pred hhHHHHHcccHHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh--c--
Confidence 567888889999999999999999999999999999887632 1457778889999999999999999775532 1
Q ss_pred ccCCeEEEEEEEeecCcccchHHHHHHHHHHHHhhhhhhhhh
Q 004360 200 KESNRVLVKYQLTVDGLDGIELRTVLEAMEVVGILDYGLAKV 241 (759)
Q Consensus 200 ~~~~~i~v~~~~~~~~~~~~~L~~vl~AL~~lg~l~~~l~~l 241 (759)
. .+..+...+.+|-+||.-+....-|
T Consensus 89 ---~-------------~~~~~r~~v~~L~rLg~~~~A~~lf 114 (235)
T 2d2s_A 89 ---N-------------EIVHLKSGTENMIKLGLPEQALDLF 114 (235)
T ss_dssp ---S-------------SHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ---C-------------CHHHHHHHHHHHHHCCChhHHHHHH
Confidence 0 1346778888888888876654433
No 5
>3etv_A Protein transport protein TIP20,linker,protein transport protein DSL1; TIP20P-DSL1P complex, endoplasmic reticulum, ER-golgi transport; 1.94A {Saccharomyces cerevisiae} PDB: 3etu_A
Probab=75.04 E-value=7.5 Score=41.04 Aligned_cols=217 Identities=12% Similarity=0.105 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCchhhhHHHHHHHHhHhhccC-CCCCCchhHHHhHHHHHHHHHHHHHH
Q 004360 109 KEARVKKELLELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVGD-ENASEPLVYGLLRKEWLVCFEEIQEL 187 (759)
Q Consensus 109 ~el~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~~~~~Aa~~L~~l~~~l~~~~-~~~~~~~I~~~L~~~~~~l~~~i~~~ 187 (759)
|+..-.+++ .-+..++.+...|.|++.-++--++..+...|+.+++.++..+ .....-.-=+.+..-+..|+..+...
T Consensus 60 re~~Lt~EL-~~l~~LK~Vs~Li~EfktN~ellElENCyYSLqnLrKKl~~n~~~~kqs~~FQqSvatYVDsLHl~Lv~k 138 (355)
T 3etv_A 60 REAILANEL-NILDNLKTFLNLIKEVKTNLNILELENCYYSLQSLRKKMRNNAAYLKQSFNFQQSISTYVDTLHLELVST 138 (355)
T ss_dssp THHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCHHHHTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcchHHHhccchhhhhHHHHHHHHHHHHHHH
Confidence 333344444 4677899999999999999999999999999999999997653 22122222233333334444444444
Q ss_pred HHHHHH-hhccccccCCeEEEEEEEeecCcc-cc---hHHHHHHHHH-H---------------HHhhhhhhhhhhhhhh
Q 004360 188 LVKFVE-SAVRFEKESNRVLVKYQLTVDGLD-GI---ELRTVLEAME-V---------------VGILDYGLAKVADLKI 246 (759)
Q Consensus 188 L~~~~~-~~v~~~~~~~~i~v~~~~~~~~~~-~~---~L~~vl~AL~-~---------------lg~l~~~l~~l~~~L~ 246 (759)
+.+.-. .. |.-++++++.+-.+..+..+ .. ++-+++.... - +|.+...+. ..+
T Consensus 139 l~~ilt~~F--W~I~~~si~F~~~I~~g~D~v~~~Yd~f~~f~~~~~fp~~~lD~~~WfI~dm~l~d~qe~Vr----~kL 212 (355)
T 3etv_A 139 LYKILTNGF--WKITENSIQFTPTVEWGKDKVHIEYDTFMDFVAQQYFPKGSLDNQAWFILDMTSADSQEQVR----AKL 212 (355)
T ss_dssp HHHHHHHTT--EEECSSEEEECSEEEETTTTEEEEHHHHHHHHHHHHCGGGSCCTTSHHHHTCSSHHHHHHHH----HHH
T ss_pred HHHHHhhhh--eeecCCeEEEccceeecCcceeeecHHHHHHHHHhcCCCCCCCcccceeeecccchHHHHHH----HHH
Confidence 433333 12 23445665544443333211 22 2333333222 1 233333322 223
Q ss_pred hhhcccccccCCccchhhh-cCCCchh--hHHH--HHhhccCCCccccccCcceeehhHHHHHHHhhhhhcccC-Cceee
Q 004360 247 KYVISPAVSYGSPITFVEE-LNPGPEK--MSEA--ILRMVPSVDDKIENVDGKTIYSGIIQVVKFIHKRICLQN-GSWVR 320 (759)
Q Consensus 247 ~~il~Pli~~~~~~~~v~~-~~~~~~~--~~~~--~L~~~~~~~~~~~~~~~~~v~~~l~~vl~FL~~~L~~~n-~~l~~ 320 (759)
+.|+.-.|.-......+.. +-.++.. .++. .|....+ ...+...+.+...+...+..|+...+...+ ..++.
T Consensus 213 ~~I~~~Yi~l~~v~~~iK~~iF~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~i~Sf~~l~~Fl~~~ls~~d~~~l~~ 290 (355)
T 3etv_A 213 NTIMKEYMNLSRIVSMIKNSIFISGKEISYENEKNILVFSKS--SSHGQHCVSTVLTSFEAVCDFMLDGLAFRDRKTLSY 290 (355)
T ss_dssp HHHHHHHTSCHHHHHHHHHHTTCTTEEEEEETTTTEEEEEEC--------CHHHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCceEEecCCCceEEeecc--cccccccHHHHHHHHHHHHHHHHhhcCHhHHHHHHH
Confidence 3333333222211110000 0000000 0001 1221111 011123345667778899999999987533 45667
Q ss_pred ecccccchhhhHHH
Q 004360 321 CFGRLTWPRISELI 334 (759)
Q Consensus 321 ~~g~~i~~~ls~~l 334 (759)
.||..+..++...+
T Consensus 291 ~LG~~i~tE~~K~v 304 (355)
T 3etv_A 291 ELGPLFNTEFTKFV 304 (355)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHH
Confidence 88887777766543
No 6
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=68.70 E-value=11 Score=33.37 Aligned_cols=55 Identities=16% Similarity=0.211 Sum_probs=35.3
Q ss_pred hHHHHHHhhhccchhhhHhHHHHHHhhhhchHHHHhhhhhhhhhhhhhhhcHHHH
Q 004360 30 DLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDI 84 (759)
Q Consensus 30 dl~~~i~~l~~~~~e~k~~v~~~i~~~y~~f~~~~~~~~~l~~~~~~l~~~l~~l 84 (759)
||..+..+|...+++.|.+....-..+|.....+-.-...+...-+.+...|..|
T Consensus 7 dL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReL 61 (111)
T 2v66_B 7 DLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVREL 61 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888999999999999988877666666655555444444444444444444333
No 7
>2pih_A Protein YMCA; regulate community development, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.281.1.1
Probab=67.44 E-value=31 Score=32.13 Aligned_cols=110 Identities=12% Similarity=0.105 Sum_probs=77.8
Q ss_pred hhhcHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCc---hhhhHHHHHHH
Q 004360 77 ISTDLSDILGLISYRPIDKEVKEIIDEVSAKMKEARVKKELLELVRAIVEIGERLKGVKEALRDGR---LRFAAEELREL 153 (759)
Q Consensus 77 l~~~l~~l~~~i~~~~~~~~l~~~~~~~~~l~~el~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~~---~~~Aa~~L~~l 153 (759)
+-+.++.|...|.+ .+...++...++.+..+..+..++...+.....+...+. .|+ +.+....+.++
T Consensus 9 I~d~A~eL~~aI~e-------seeyk~yk~A~~~i~~D~eaq~li~eF~~~Q~~~~~~q~---~Gk~~~~~e~~~el~~l 78 (151)
T 2pih_A 9 IVQQARNLAKMISE-------TEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKH---YEKHEALKQVEAKIDAL 78 (151)
T ss_dssp HHHHHHHHHHHHTT-------BHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-------CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH---cCCccchHHHHHHHHHH
Confidence 44455666666655 256667788888888899999888888888888877766 454 55666667777
Q ss_pred HhHhhccCCCCCCchhHHHhHHHHHHHHHHHHHHHHHHHHhhccccc
Q 004360 154 KKDLRVGDENASEPLVYGLLRKEWLVCFEEIQELLVKFVESAVRFEK 200 (759)
Q Consensus 154 ~~~l~~~~~~~~~~~I~~~L~~~~~~l~~~i~~~L~~~~~~~v~~~~ 200 (759)
+..++..+ .-.-|..-..++..+...|...+.+..+..+.++.
T Consensus 79 ~~~l~~np----~V~~y~~Ae~~l~~LL~~I~~iI~~~I~~~i~v~t 121 (151)
T 2pih_A 79 QEELEEIP----VIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITST 121 (151)
T ss_dssp HHHHHHSH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCC
Confidence 77776664 33344555667777888888888888888777654
No 8
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=62.68 E-value=10 Score=31.52 Aligned_cols=65 Identities=12% Similarity=0.190 Sum_probs=41.5
Q ss_pred CCCCCCCcchHHHHHHhhhccchhhhHhHHHHHHh---hhhchHHHHhhhhhhhhhhhhhhhcHHHHH
Q 004360 21 DQTAPLTAPDLRLLISRLEFHSLQIKSKVQSYIAS---HHQDFASLFSLCNDTVSRTDEISTDLSDIL 85 (759)
Q Consensus 21 ~~~~~l~~~dl~~~i~~l~~~~~e~k~~v~~~i~~---~y~~f~~~~~~~~~l~~~~~~l~~~l~~l~ 85 (759)
+.++|=+-+.|.+.|.||.++.-+.|+++|+-... .|.+.....+.+=+.....++.+..+..+.
T Consensus 10 ~~~t~~di~eLkkevkKL~~~A~q~kmdLHDLaEdLP~~w~~i~~vA~~tyda~~~l~~ak~~L~~~e 77 (81)
T 3csx_A 10 NNPTPEAVADLKKKVRKLNSKAGQMKMDLHDLAEGLPTDYENLVETAEKTYEIFRELDQLKKKLNIWE 77 (81)
T ss_dssp --------CCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566789999999999999999999988775 444455555555555566655555555544
No 9
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=52.82 E-value=34 Score=38.00 Aligned_cols=30 Identities=17% Similarity=0.174 Sum_probs=13.3
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHhhHHHH
Q 004360 106 AKMKEARVKKE-LLELVRAIVEIGERLKGVK 135 (759)
Q Consensus 106 ~l~~el~~~~~-~~~~l~~l~~~~~~L~~~~ 135 (759)
.|++.+.+.+. +-..+.+|+.+...|++..
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~ 144 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQL 144 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444322 2233355555555555443
No 10
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=50.37 E-value=54 Score=36.44 Aligned_cols=20 Identities=15% Similarity=0.282 Sum_probs=9.9
Q ss_pred hccchhhhHhHHHHHHhhhhc
Q 004360 39 EFHSLQIKSKVQSYIASHHQD 59 (759)
Q Consensus 39 ~~~~~e~k~~v~~~i~~~y~~ 59 (759)
..+|++||.++-++ .+.|.+
T Consensus 63 tkrINELKnqLEdl-sKnsKd 82 (562)
T 3ghg_A 63 TNRINKLKNSLFEY-QKNNKD 82 (562)
T ss_dssp HHHHHHHHHHHTHH-HHHHHH
T ss_pred HHHHHHHHHHHHHH-Hhhchh
Confidence 34555555555544 444433
No 11
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=47.94 E-value=13 Score=26.90 Aligned_cols=27 Identities=11% Similarity=0.217 Sum_probs=24.5
Q ss_pred CCCcchHHHHHHhhhccchhhhHhHHH
Q 004360 25 PLTAPDLRLLISRLEFHSLQIKSKVQS 51 (759)
Q Consensus 25 ~l~~~dl~~~i~~l~~~~~e~k~~v~~ 51 (759)
+||++||-.+|+|+.+++.-++.+|.+
T Consensus 1 ~~tk~~l~qkI~kVdrEI~Kte~kI~~ 27 (42)
T 2l5g_B 1 GLSKEELIQNMDRVDREITMVEQQISK 27 (42)
T ss_dssp CCSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999998874
No 12
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=42.52 E-value=77 Score=28.22 Aligned_cols=87 Identities=14% Similarity=0.154 Sum_probs=49.2
Q ss_pred hHHHHHHhhhccchhhhHhHHH------HHHhhhhchHHHHhhhhhhhhhhhhhhhcHHHHHhhhcCCCcchHHHHHHHH
Q 004360 30 DLRLLISRLEFHSLQIKSKVQS------YIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDE 103 (759)
Q Consensus 30 dl~~~i~~l~~~~~e~k~~v~~------~i~~~y~~f~~~~~~~~~l~~~~~~l~~~l~~l~~~i~~~~~~~~l~~~~~~ 103 (759)
+|+..|+.+......+..++-+ -.+.+|.+-... ..++-..+..+++++|+..-. -.+.-.+
T Consensus 24 ~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~---r~~~E~di~~lrK~lD~~~l~---------r~dLE~~ 91 (119)
T 3ol1_A 24 ELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQ---REEAENTLQSFRQDVDNASLA---------RLDLERK 91 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH---HHHHHHHHHHhhhcccHHHHH---------HHHHHHH
Confidence 6777776666655555544432 245556554443 334445666677777664333 1234456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004360 104 VSAKMKEARVKKELLELVRAIVEIGER 130 (759)
Q Consensus 104 ~~~l~~el~~~~~~~~~l~~l~~~~~~ 130 (759)
+..|+.|+.|.+.+.+ +.|.++...
T Consensus 92 iesL~eEl~FLKk~he--eEl~eLq~q 116 (119)
T 3ol1_A 92 VESLQEEIAFLKKLHE--EEIQELQAQ 116 (119)
T ss_dssp HHHHHHHHHHHHHHHH--HHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 7788888888776653 445554443
No 13
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=40.36 E-value=46 Score=32.26 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=9.6
Q ss_pred hHHHHHHhhhccchhhhHhHH
Q 004360 30 DLRLLISRLEFHSLQIKSKVQ 50 (759)
Q Consensus 30 dl~~~i~~l~~~~~e~k~~v~ 50 (759)
+|..++.+|...+++.|.+..
T Consensus 60 ~L~~~~~~L~~E~e~~k~K~~ 80 (189)
T 2v71_A 60 DLQADNQRLKYEVEALKEKLE 80 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 14
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=39.82 E-value=42 Score=27.18 Aligned_cols=58 Identities=10% Similarity=0.185 Sum_probs=41.0
Q ss_pred cchHHHHHHhhhccchhhhHhHHHHHHh---hhhchHHHHhhhhhhhhhhhhhhhcHHHHH
Q 004360 28 APDLRLLISRLEFHSLQIKSKVQSYIAS---HHQDFASLFSLCNDTVSRTDEISTDLSDIL 85 (759)
Q Consensus 28 ~~dl~~~i~~l~~~~~e~k~~v~~~i~~---~y~~f~~~~~~~~~l~~~~~~l~~~l~~l~ 85 (759)
-+.|.+.|.||.++.-+.|+++++-... .|.+.....+.+-+.....++.+..+..+.
T Consensus 5 i~eLkkevkKL~~~A~q~kmdLHDLaEdLP~~w~~i~~vA~~tyda~~~l~~ak~~L~~~~ 65 (71)
T 2js5_A 5 AEELKAKLKKLNAQATALKMDLHDLAEDLPTGWNRIMEVAEKTYEAYRQLDEFRKSTASLE 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999999999999999988775 444455555555555566655555555543
No 15
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=26.32 E-value=4.9e+02 Score=25.85 Aligned_cols=172 Identities=15% Similarity=0.121 Sum_probs=0.0
Q ss_pred hHHHHHHhhhccchhhhHhHHH----------HHHhhhhchHHHHhhhhhhhhhhhhhhhcHHHHHhhhcCCCcchHHHH
Q 004360 30 DLRLLISRLEFHSLQIKSKVQS----------YIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKE 99 (759)
Q Consensus 30 dl~~~i~~l~~~~~e~k~~v~~----------~i~~~y~~f~~~~~~~~~l~~~~~~l~~~l~~l~~~i~~~~~~~~l~~ 99 (759)
.+...|+++..+..++..+|-+ .+..........-.....+...++.++..+.....++.+--...++..
T Consensus 15 ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~a 94 (256)
T 3na7_A 15 HLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRS 94 (256)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHH
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhHHHHHHhhcCchhhhHHHHHHHHhHhhccCCCCCCchhHHHhHHHHH
Q 004360 100 IIDEVSAKMKEARV-KKELLELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVGDENASEPLVYGLLRKEWL 178 (759)
Q Consensus 100 ~~~~~~~l~~el~~-~~~~~~~l~~l~~~~~~L~~~~~~l~~~~~~~Aa~~L~~l~~~l~~~~~~~~~~~I~~~L~~~~~ 178 (759)
...++..+++++.. ...++.+.+.+......+.+.+. .+...-..++..+..++..-.. --.-...|..+-.
T Consensus 95 L~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~-----~l~~~~~~l~~~~~~~~~~~~e--~~~e~~~l~~~r~ 167 (256)
T 3na7_A 95 LNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKK-----EMLELEKLALELESLVENEVKN--IKETQQIIFKKKE 167 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhhccccccCCeEEEE
Q 004360 179 VCFEEIQELLVKFVESAVRFEKESNRVLVK 208 (759)
Q Consensus 179 ~l~~~i~~~L~~~~~~~v~~~~~~~~i~v~ 208 (759)
.+...|-..|...|.++-.+...-+-+.|.
T Consensus 168 ~l~~~i~~~lL~~Yerir~~~~g~avv~v~ 197 (256)
T 3na7_A 168 DLVEKTEPKIYSFYERIRRWAKNTSIVTIK 197 (256)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHGGGSEEECB
T ss_pred HHHhcCCHHHHHHHHHHHHhCCCceEEEee
No 16
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=25.96 E-value=3.5e+02 Score=24.76 Aligned_cols=62 Identities=18% Similarity=0.173 Sum_probs=37.1
Q ss_pred chhhhHhHHHHHHhhhhchHHHHhhhhhhhhhhhhhhhcHHHHHhhhcCCCcchHHHHHHHHHHHHHH
Q 004360 42 SLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMK 109 (759)
Q Consensus 42 ~~e~k~~v~~~i~~~y~~f~~~~~~~~~l~~~~~~l~~~l~~l~~~i~~~~~~~~l~~~~~~~~~l~~ 109 (759)
+.+-+.+=..--+..|.+|-.+-.....+..++.+|...|+.+- +...+.++++.++.++++
T Consensus 43 S~eqR~rYK~~F~~dy~EYk~Lhaev~~v~~~F~~Ld~~L~~l~------~~s~e~~~i~~EY~r~k~ 104 (140)
T 1xaw_A 43 SDQQRQLYKRNFDTGLQEYKSLQSVLDEINKELSRLDKELDDYR------EESEEYMAAADEYNRLKQ 104 (140)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC------TTSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCC------CCCHHHHHHHHHHHHHHH
Confidence 34444444445566666666666666666666666655555532 234577788888877643
No 17
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=25.05 E-value=1.9e+02 Score=27.15 Aligned_cols=123 Identities=13% Similarity=0.065 Sum_probs=0.0
Q ss_pred chHHHHHHhhhccchhhhHhHHHHHHhhhhc---hHHHHhhhhhhhhhhhhhhhcHHHHHhhhcCCCcchHHHHHHHHHH
Q 004360 29 PDLRLLISRLEFHSLQIKSKVQSYIASHHQD---FASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVS 105 (759)
Q Consensus 29 ~dl~~~i~~l~~~~~e~k~~v~~~i~~~y~~---f~~~~~~~~~l~~~~~~l~~~l~~l~~~i~~~~~~~~l~~~~~~~~ 105 (759)
+.|.....+|.+ .++++..+.....--+.+ -.+.+..|.....++..+...+..+..++++ +...+.+++.++.
T Consensus 35 eeLe~e~~rL~n-ae~l~~~~~~a~~~L~~~e~~~~~~L~~a~~~L~~l~~~d~~l~~~~e~l~~--a~~~l~d~~~~L~ 111 (175)
T 4abx_A 35 EGLNTELSRLSN-LHTIAQAAAGGVELLSDGDLNAAGLIGEAVRALNAGAKYDETVMQLQNELRA--ALESVQAIAGELR 111 (175)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC-HHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHhChhHHHHHHHHHH--HHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCc--hhhhHHHHHHHHhHhhcc
Q 004360 106 AKMKEARVKKELLELVRAIVEIGERLKGVKEALRDGR--LRFAAEELRELKKDLRVG 160 (759)
Q Consensus 106 ~l~~el~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~~--~~~Aa~~L~~l~~~l~~~ 160 (759)
.....+.+.- +.+..+.++|..++....+.. +.+.+...++++..|..+
T Consensus 112 ~y~~~le~DP------~rL~~ie~RL~~l~~L~RKyg~~~eell~~~~~~~~eL~~l 162 (175)
T 4abx_A 112 DVAEGSAADP------EALDRVEARLSALSKLKNKYGPTLEDVVEFGAQAAEELAGL 162 (175)
T ss_dssp HHHHTCCCCH------HHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCH------HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
No 18
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=22.19 E-value=84 Score=23.89 Aligned_cols=10 Identities=10% Similarity=0.159 Sum_probs=4.1
Q ss_pred HHHHHHHhhH
Q 004360 123 AIVEIGERLK 132 (759)
Q Consensus 123 ~l~~~~~~L~ 132 (759)
+....++||+
T Consensus 40 eA~RAN~RlD 49 (52)
T 1jcd_A 40 DAARANQRAD 49 (52)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhh
Confidence 3334444443
No 19
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=21.49 E-value=5.5e+02 Score=24.71 Aligned_cols=32 Identities=22% Similarity=0.348 Sum_probs=18.6
Q ss_pred CCchhHHHhHHHHHHHHHHHHHHHHHHHHhhcc
Q 004360 165 SEPLVYGLLRKEWLVCFEEIQELLVKFVESAVR 197 (759)
Q Consensus 165 ~~~~I~~~L~~~~~~l~~~i~~~L~~~~~~~v~ 197 (759)
..+.|-+ ++.++..+...++--|.-.-.+|..
T Consensus 154 ~Sp~l~h-~RN~yq~i~q~Fqi~lk~LtdkClE 185 (204)
T 2jqq_A 154 NSPYIHH-LRNDYQDLLQEFQISLKILTEKCLE 185 (204)
T ss_dssp CCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444443 6777776666666666655555544
No 20
>3fxd_A Protein ICMQ; helix bundle, helix-turn-helix, unknown function; 2.10A {Legionella pneumophila} PDB: 3fxe_A
Probab=21.37 E-value=2.1e+02 Score=21.94 Aligned_cols=43 Identities=9% Similarity=0.112 Sum_probs=35.4
Q ss_pred hhHHHHHHHHhHhhccCCCCCCchhHHHhHHHHHHHHHHHHHHHH
Q 004360 145 FAAEELRELKKDLRVGDENASEPLVYGLLRKEWLVCFEEIQELLV 189 (759)
Q Consensus 145 ~Aa~~L~~l~~~l~~~~~~~~~~~I~~~L~~~~~~l~~~i~~~L~ 189 (759)
.+-..|+.+..++...|+ +++.-++.+++...+.|+.+..++.
T Consensus 9 q~~aILkaLdeaIe~GPW--e~SNFLRvIGKnL~eIRd~F~~~i~ 51 (57)
T 3fxd_A 9 QKETILKALNDAIEKGPW--DKSNFLRVIGKKLIAIRDRFLKRIG 51 (57)
T ss_dssp HHHHHHHHHHHHHHHSCT--TSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCc--hHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 355667788888888887 5888999999999999999888764
No 21
>1hlb_A Hemoglobin (deoxy); oxygen transport; HET: HEM; 2.50A {Caudina arenicola} SCOP: a.1.1.2
Probab=20.98 E-value=2.1e+02 Score=25.94 Aligned_cols=55 Identities=11% Similarity=-0.023 Sum_probs=41.9
Q ss_pred cCCCCCCCCCCCcchHH---HHHHhhhccchhhhHhHHHHHHhhhhchHHHHhhhhhh
Q 004360 16 THDLTDQTAPLTAPDLR---LLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDT 70 (759)
Q Consensus 16 ~~~~~~~~~~l~~~dl~---~~i~~l~~~~~e~k~~v~~~i~~~y~~f~~~~~~~~~l 70 (759)
..+-.||.++||+++.. ..-.++....+++=.+++..+-..|++....|..-.++
T Consensus 3 ~~~~~~~~~~lt~~~~~~i~~sw~~v~~~~~~~g~~~~~rlF~~~P~~k~~F~~~~~~ 60 (158)
T 1hlb_A 3 GTLAIQAQGDLTLAQKKIVRKTWHQLMRNKTSFVTDVFIRIFAYDPSAQNKFPQMAGM 60 (158)
T ss_dssp CTTCSCCCSCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHCTHHHHTSGGGTTC
T ss_pred cccCCCCCCCCCHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHCHHHHHHhhhhcCC
Confidence 34556999999998754 34455666677888899999999999988888875544
No 22
>2b0h_A Talin-1; vinculin, helical bundle, VBS, structural protein; NMR {Mus musculus} SCOP: a.24.9.2
Probab=20.78 E-value=4.8e+02 Score=23.72 Aligned_cols=75 Identities=13% Similarity=0.108 Sum_probs=56.3
Q ss_pred hHHHHHHhhhccchhhhHhHHHHHHhhhhchHHHHhhhhhhhhhhhhhhhcHHHHHhhhcCCCcchHHHHHHHHH
Q 004360 30 DLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEV 104 (759)
Q Consensus 30 dl~~~i~~l~~~~~e~k~~v~~~i~~~y~~f~~~~~~~~~l~~~~~~l~~~l~~l~~~i~~~~~~~~l~~~~~~~ 104 (759)
-...+-.+|-....+|-.-+.+|+.+-..+=..+-..+.++...-..|-.+-.......++.++...|+..|.++
T Consensus 13 sfvdYQt~m~~~~K~iA~~aqemv~ks~~~p~eL~~la~~lt~~Y~~La~~~~~A~~~~~~~~v~~~Ir~~Vq~L 87 (137)
T 2b0h_A 13 SFVDYQTTMVRTAKAIAVTVQEMVTKSNTSPEELGPLANQLTSDYGRLASQAKPAAVAAENEEIGAHIKHRVQEL 87 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSSTHHHHHHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 566666777777888888888898888877777777788888777777777777777777766666677666665
No 23
>2oee_A UPF0342 protein YHEA; MCSG, structural genomics, PSI-2, protein structure in midwest center for structural genomics, unknown function; HET: MSE; 1.96A {Bacillus subtilis} SCOP: a.281.1.2
Probab=20.44 E-value=3.2e+02 Score=23.58 Aligned_cols=104 Identities=9% Similarity=0.067 Sum_probs=55.1
Q ss_pred hcHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCc--hhhhHHHHHHHHhH
Q 004360 79 TDLSDILGLISYRPIDKEVKEIIDEVSAKMKEARVKKELLELVRAIVEIGERLKGVKEALRDGR--LRFAAEELRELKKD 156 (759)
Q Consensus 79 ~~l~~l~~~i~~~~~~~~l~~~~~~~~~l~~el~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~~--~~~Aa~~L~~l~~~ 156 (759)
+..+.|...|.+ .+...++...++.+..+..+..++...+.....+...+ ..|+ .......+.++...
T Consensus 7 d~A~eL~~~I~~-------s~ey~~~~~a~~~i~~d~ea~~l~~~f~~~q~~~~~~q---~~G~~~~~e~~~~~~~l~~~ 76 (117)
T 2oee_A 7 DVAYDLENALRG-------SEEFTRLKNLYDEVNADESAKRMFENFRDVQLRLQQKQ---MAGEEITQEEVTQAQKTVAL 76 (117)
T ss_dssp HHHHHHHHHHHT-------SHHHHHHHHHHHHHHHSHHHHHHHHHHHHHCC---------------------CHHHHHHH
T ss_pred HHHHHHHHHHHh-------CHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH---HcCCCCCHHHHHHHHHHHHH
Confidence 344555555544 25666777888888889999888888888887777765 3443 23455556666666
Q ss_pred hhccCCCCCCchhHHHhHHHHHHHHHHHHHHHHHHHHhhc
Q 004360 157 LRVGDENASEPLVYGLLRKEWLVCFEEIQELLVKFVESAV 196 (759)
Q Consensus 157 l~~~~~~~~~~~I~~~L~~~~~~l~~~i~~~L~~~~~~~v 196 (759)
++..+ .-.-|..-..++..+...|...+.+..+..+
T Consensus 77 i~~~p----~v~~y~~Ae~~l~~ll~~I~~~I~~~i~~~~ 112 (117)
T 2oee_A 77 VQQHE----KISQLMEAEQRMSMLIGELNKIIMKPLEELY 112 (117)
T ss_dssp HHTSH----HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHC
T ss_pred HhcCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66554 2223333445555566666555555555443
No 24
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=20.20 E-value=2.1e+02 Score=31.35 Aligned_cols=20 Identities=20% Similarity=0.243 Sum_probs=11.2
Q ss_pred HhHHHHHHhhhhchHHHHhh
Q 004360 47 SKVQSYIASHHQDFASLFSL 66 (759)
Q Consensus 47 ~~v~~~i~~~y~~f~~~~~~ 66 (759)
.-+...|.+.|..+......
T Consensus 40 ~gl~~~l~~ff~alq~la~~ 59 (463)
T 2d4y_A 40 SSLSGSLQSFFTSLQTLVSN 59 (463)
T ss_dssp TCHHHHHHHHHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHHHHHhC
Confidence 44666666666655555333
Done!