BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 004361
         (759 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3Q6K|A Chain A, Salivary Protein From Lutzomyia Longipalpis
 pdb|3Q6K|B Chain B, Salivary Protein From Lutzomyia Longipalpis
 pdb|3Q6T|A Chain A, Salivary Protein From Lutzomyia Longipalpis, Ligand Free
 pdb|3Q6T|B Chain B, Salivary Protein From Lutzomyia Longipalpis, Ligand Free
          Length = 381

 Score = 32.0 bits (71), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 21/39 (53%)

Query: 4   ACGLQQPNVFEGTRYRISDRLINSRFRYGGFGYNVSNRR 42
           A  L+QPN  E  RY    RL+     +GGF  +V+N +
Sbjct: 127 AYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPK 165


>pdb|3Q6P|A Chain A, Salivary Protein From Lutzomyia Longipalpis.
           Selenomethionine Derivative
 pdb|3Q6P|B Chain B, Salivary Protein From Lutzomyia Longipalpis.
           Selenomethionine Derivative
          Length = 381

 Score = 31.6 bits (70), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 21/39 (53%)

Query: 4   ACGLQQPNVFEGTRYRISDRLINSRFRYGGFGYNVSNRR 42
           A  L+QPN  E  RY    RL+     +GGF  +V+N +
Sbjct: 127 AYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPK 165


>pdb|2V7C|A Chain A, Crystal Structure Of Rev-Erb Beta
 pdb|2V7C|B Chain B, Crystal Structure Of Rev-Erb Beta
          Length = 194

 Score = 30.8 bits (68), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 28/52 (53%)

Query: 564 EEASSNAKPLIREVKKLPKRIKKLLDMLPEQEINEEEASLFDVLWLLLASVI 615
           EE S +  P ++EV +  KRI    D+    ++N  +A  F+VL +  AS+ 
Sbjct: 18  EEFSXSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLXVRFASLF 69


>pdb|3CQV|A Chain A, Crystal Structure Of Reverb Beta In Complex With Heme
          Length = 199

 Score = 30.8 bits (68), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 28/52 (53%)

Query: 564 EEASSNAKPLIREVKKLPKRIKKLLDMLPEQEINEEEASLFDVLWLLLASVI 615
           EE S +  P ++EV +  KRI    D+    ++N  +A  F+VL +  AS+ 
Sbjct: 23  EEFSXSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLXVRFASLF 74


>pdb|2V0V|A Chain A, Crystal Structure Of Rev-Erb Beta
 pdb|2V0V|B Chain B, Crystal Structure Of Rev-Erb Beta
 pdb|2V0V|C Chain C, Crystal Structure Of Rev-Erb Beta
 pdb|2V0V|D Chain D, Crystal Structure Of Rev-Erb Beta
          Length = 194

 Score = 30.8 bits (68), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 28/52 (53%)

Query: 564 EEASSNAKPLIREVKKLPKRIKKLLDMLPEQEINEEEASLFDVLWLLLASVI 615
           EE S +  P ++EV +  KRI    D+    ++N  +A  F+VL +  AS+ 
Sbjct: 18  EEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLF 69


>pdb|3PGM|A Chain A, The Structure Of Yeast Phosphoglycerate Mutase At 0.28 Nm
           Resolution
 pdb|3PGM|B Chain B, The Structure Of Yeast Phosphoglycerate Mutase At 0.28 Nm
           Resolution
          Length = 244

 Score = 29.6 bits (65), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 12/100 (12%)

Query: 310 EVAEKAQMNALKAEEDVANIMLLAEQAVAFEIEATQR----VNDAEIALQRAEKSL--SN 363
           +++ K Q  A +A E      LL E+ V   ++ T +    +  A IAL++A++     N
Sbjct: 26  KLSAKGQQEAARAGE------LLKEKGVNVLVDYTSKLSRAIQTANIALEKADRLWIPVN 79

Query: 364 SSVDISERIKGYVSGDETAVKEEKAGSTDDVNVERDIDVP 403
            S  ++ER  G + G + A   +K G        R  DVP
Sbjct: 80  RSWRLNERHYGDLQGKDKAQTLKKFGEEKFNTYRRSFDVP 119


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.311    0.129    0.348 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,221,921
Number of Sequences: 62578
Number of extensions: 750003
Number of successful extensions: 1990
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 1940
Number of HSP's gapped (non-prelim): 61
length of query: 759
length of database: 14,973,337
effective HSP length: 106
effective length of query: 653
effective length of database: 8,340,069
effective search space: 5446065057
effective search space used: 5446065057
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)