Query 004361
Match_columns 759
No_of_seqs 209 out of 1195
Neff 3.8
Searched_HMMs 46136
Date Thu Mar 28 22:07:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004361.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004361hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK03562 glutathione-regulated 99.9 1.1E-23 2.5E-28 239.1 20.1 156 601-758 5-160 (621)
2 PLN03159 cation/H(+) antiporte 99.9 1.8E-23 3.9E-28 244.4 18.6 185 568-758 12-214 (832)
3 PRK03659 glutathione-regulated 99.9 6E-23 1.3E-27 232.3 20.1 155 601-757 5-159 (601)
4 TIGR00932 2a37 transporter, mo 99.9 9.6E-23 2.1E-27 207.3 18.2 147 611-758 2-148 (273)
5 PRK10669 putative cation:proto 99.9 1E-22 2.2E-27 227.5 20.1 156 601-758 6-161 (558)
6 COG0475 KefB Kef-type K+ trans 99.9 5.1E-22 1.1E-26 215.2 19.3 158 599-758 4-164 (397)
7 PRK05326 potassium/proton anti 99.8 5.2E-20 1.1E-24 206.4 17.8 158 600-758 5-165 (562)
8 COG4651 RosB Kef-type K+ trans 99.8 1.7E-18 3.8E-23 182.2 9.2 156 601-758 6-161 (408)
9 PF00999 Na_H_Exchanger: Sodiu 99.7 5E-19 1.1E-23 186.2 -2.2 150 608-758 3-156 (380)
10 KOG1650 Predicted K+/H+-antipo 99.7 1E-16 2.2E-21 186.8 9.1 159 598-758 20-199 (769)
11 TIGR00831 a_cpa1 Na+/H+ antipo 99.6 3.4E-15 7.3E-20 167.4 16.9 148 607-758 4-152 (525)
12 TIGR00844 c_cpa1 na(+)/h(+) an 99.5 2.7E-13 5.8E-18 157.9 18.2 154 601-756 13-177 (810)
13 COG0025 NhaP NhaP-type Na+/H+ 99.4 5.8E-12 1.3E-16 138.7 17.2 156 600-757 5-163 (429)
14 TIGR00840 b_cpa1 sodium/hydrog 99.2 1.4E-10 3E-15 131.9 15.9 144 614-758 22-177 (559)
15 COG3263 NhaP-type Na+/H+ and K 99.2 2.7E-10 5.8E-15 125.6 15.0 136 607-744 13-150 (574)
16 KOG1965 Sodium/hydrogen exchan 98.5 2.1E-07 4.6E-12 105.9 8.4 156 601-758 35-208 (575)
17 KOG4505 Na+/H+ antiporter [Ino 97.8 0.00024 5.2E-09 77.6 12.8 114 632-745 44-164 (467)
18 PRK03562 glutathione-regulated 97.5 0.005 1.1E-07 71.7 18.2 136 616-754 231-368 (621)
19 PRK03659 glutathione-regulated 97.4 0.0059 1.3E-07 70.8 18.3 135 616-754 228-365 (601)
20 PLN03159 cation/H(+) antiporte 97.1 0.01 2.3E-07 71.5 16.5 92 657-749 324-419 (832)
21 PRK10669 putative cation:proto 97.1 0.019 4.1E-07 65.7 17.6 132 621-755 244-377 (558)
22 PRK03818 putative transporter; 96.8 0.018 4E-07 66.5 14.0 103 629-734 33-141 (552)
23 PRK14853 nhaA pH-dependent sod 96.7 0.032 6.9E-07 63.0 15.0 101 652-758 62-170 (423)
24 TIGR03802 Asp_Ala_antiprt aspa 96.5 0.032 6.9E-07 64.7 13.7 99 610-714 15-119 (562)
25 PF03956 DUF340: Membrane prot 96.5 0.018 3.8E-07 58.6 10.0 88 631-722 3-95 (191)
26 COG0475 KefB Kef-type K+ trans 96.4 0.12 2.5E-06 57.6 16.9 113 609-723 227-340 (397)
27 TIGR03082 Gneg_AbrB_dup membra 96.3 0.091 2E-06 51.3 13.7 104 608-716 2-110 (156)
28 KOG1966 Sodium/hydrogen exchan 96.3 0.0093 2E-07 69.4 7.8 131 626-757 68-208 (670)
29 TIGR03802 Asp_Ala_antiprt aspa 96.2 0.059 1.3E-06 62.5 13.6 108 628-737 417-532 (562)
30 PF05145 AmoA: Putative ammoni 96.2 0.099 2.2E-06 56.6 14.1 110 603-716 154-267 (318)
31 TIGR01625 YidE_YbjL_dupl AspT/ 96.1 0.093 2E-06 51.9 12.4 107 629-737 24-139 (154)
32 PRK03818 putative transporter; 95.9 0.081 1.7E-06 61.4 12.7 129 604-734 372-515 (552)
33 PF06826 Asp-Al_Ex: Predicted 95.8 0.12 2.6E-06 51.7 11.8 109 625-735 22-136 (169)
34 TIGR00210 gltS sodium--glutama 95.7 0.28 6.1E-06 55.1 15.8 151 606-758 224-386 (398)
35 PRK04972 putative transporter; 95.7 0.12 2.5E-06 60.2 12.7 114 612-734 19-140 (558)
36 PF03601 Cons_hypoth698: Conse 95.4 0.38 8.3E-06 52.2 14.9 108 623-735 23-139 (305)
37 PRK04972 putative transporter; 95.4 0.15 3.3E-06 59.2 12.6 133 603-737 383-527 (558)
38 PRK05326 potassium/proton anti 95.1 0.17 3.7E-06 58.2 11.9 104 615-719 234-338 (562)
39 COG2855 Predicted membrane pro 95.0 0.46 1E-05 52.5 13.9 105 625-734 36-147 (334)
40 TIGR02168 SMC_prok_B chromosom 94.7 12 0.00027 45.5 26.2 12 517-528 1037-1048(1179)
41 COG2431 Predicted membrane pro 94.6 0.45 9.7E-06 51.5 12.4 160 527-721 34-201 (297)
42 TIGR00946 2a69 he Auxin Efflux 94.5 0.85 1.8E-05 48.7 14.2 122 620-746 176-300 (321)
43 COG2985 Predicted permease [Ge 94.3 0.35 7.6E-06 55.7 11.3 104 629-739 37-147 (544)
44 TIGR02168 SMC_prok_B chromosom 93.9 20 0.00044 43.7 26.0 32 150-181 679-710 (1179)
45 KOG0994 Extracellular matrix g 93.8 8.7 0.00019 48.6 22.0 68 260-327 1590-1664(1758)
46 COG0679 Predicted permeases [G 93.8 7.1 0.00015 42.1 19.6 109 623-735 165-276 (311)
47 TIGR00783 ccs citrate carrier 93.8 0.87 1.9E-05 50.6 12.9 105 615-722 193-306 (347)
48 TIGR00698 conserved hypothetic 93.7 1.9 4.2E-05 47.6 15.4 93 625-722 30-129 (335)
49 PF03616 Glt_symporter: Sodium 93.6 1.2 2.5E-05 49.6 13.7 106 610-715 230-339 (368)
50 TIGR00698 conserved hypothetic 93.3 0.95 2.1E-05 50.0 12.3 88 604-694 219-319 (335)
51 TIGR02169 SMC_prok_A chromosom 92.6 33 0.00071 42.3 25.3 47 269-315 295-341 (1164)
52 TIGR00832 acr3 arsenical-resis 92.1 1.2 2.6E-05 48.6 11.1 65 658-726 46-115 (328)
53 KOG4673 Transcription factor T 92.1 18 0.00039 43.9 20.7 43 264-306 512-554 (961)
54 TIGR00210 gltS sodium--glutama 92.0 2.4 5.1E-05 47.9 13.4 107 605-716 11-127 (398)
55 KOG0994 Extracellular matrix g 91.5 11 0.00024 47.7 18.9 63 268-330 1584-1653(1758)
56 PRK12460 2-keto-3-deoxyglucona 91.5 1.4 3E-05 48.4 10.6 83 632-718 172-254 (312)
57 TIGR02680 conserved hypothetic 91.5 26 0.00056 45.5 23.1 70 110-184 705-778 (1353)
58 PRK04125 murein hydrolase regu 91.3 2.7 5.9E-05 41.5 11.4 101 601-706 8-116 (141)
59 TIGR00808 malonate_madM malona 91.1 1.3 2.9E-05 46.5 9.4 106 603-710 15-133 (254)
60 PRK15178 Vi polysaccharide exp 91.1 13 0.00027 42.9 17.9 92 176-295 215-306 (434)
61 COG1196 Smc Chromosome segrega 91.0 17 0.00036 46.1 20.6 23 42-64 45-71 (1163)
62 PF00999 Na_H_Exchanger: Sodiu 90.9 0.076 1.7E-06 56.9 0.3 142 610-754 219-366 (380)
63 PF06008 Laminin_I: Laminin Do 90.5 20 0.00042 37.9 17.7 81 175-255 72-176 (264)
64 PRK04863 mukB cell division pr 90.5 19 0.00041 47.2 20.7 25 338-362 449-473 (1486)
65 PRK09903 putative transporter 90.5 3.5 7.7E-05 44.1 12.3 118 625-747 172-291 (314)
66 COG0786 GltS Na+/glutamate sym 90.1 6.5 0.00014 44.7 14.3 121 608-728 229-357 (404)
67 TIGR03185 DNA_S_dndD DNA sulfu 90.0 49 0.0011 39.4 22.3 54 261-314 421-474 (650)
68 COG1196 Smc Chromosome segrega 89.8 26 0.00056 44.6 20.8 59 268-326 835-893 (1163)
69 PF05701 WEMBL: Weak chloropla 89.6 14 0.0003 43.1 16.9 114 215-357 397-514 (522)
70 PF00261 Tropomyosin: Tropomyo 89.5 27 0.00057 36.6 17.5 168 150-325 59-226 (237)
71 PF03616 Glt_symporter: Sodium 89.4 3.6 7.7E-05 45.9 11.7 131 604-738 10-153 (368)
72 PF03390 2HCT: 2-hydroxycarbox 89.0 6.6 0.00014 44.9 13.5 107 614-722 259-373 (414)
73 TIGR02169 SMC_prok_A chromosom 89.0 67 0.0015 39.6 26.2 7 729-735 1117-1123(1164)
74 PRK01658 holin-like protein; V 88.9 7.2 0.00016 37.5 11.8 99 602-705 6-112 (122)
75 COG3493 CitS Na+/citrate sympo 88.8 8.2 0.00018 43.9 13.8 121 601-723 263-393 (438)
76 PF00038 Filament: Intermediat 88.2 17 0.00036 38.7 15.3 152 151-310 99-251 (312)
77 PF05701 WEMBL: Weak chloropla 88.2 53 0.0012 38.4 20.4 56 282-345 372-427 (522)
78 PRK01821 hypothetical protein; 88.1 7.4 0.00016 38.1 11.5 99 602-705 11-117 (133)
79 KOG1650 Predicted K+/H+-antipo 87.9 3.9 8.5E-05 49.7 11.5 93 657-751 312-407 (769)
80 PF03812 KdgT: 2-keto-3-deoxyg 87.7 8.5 0.00018 42.6 12.9 117 630-748 16-144 (314)
81 PF13593 DUF4137: SBF-like CPA 87.4 5.2 0.00011 43.5 11.2 27 654-680 30-56 (313)
82 KOG0996 Structural maintenance 86.6 52 0.0011 42.2 19.8 24 268-291 907-930 (1293)
83 COG3180 AbrB Putative ammonia 86.0 12 0.00026 42.1 13.1 104 606-715 190-299 (352)
84 PRK14856 nhaA pH-dependent sod 86.0 6.4 0.00014 45.3 11.2 101 652-758 68-175 (438)
85 KOG1307 K+-dependent Ca2+/Na+ 86.0 1.6 3.4E-05 50.5 6.4 46 487-538 418-469 (588)
86 COG5374 Uncharacterized conser 85.0 1.8 3.9E-05 44.5 5.7 50 274-323 142-191 (192)
87 PF06008 Laminin_I: Laminin Do 84.9 56 0.0012 34.5 18.5 157 150-323 40-212 (264)
88 PF05684 DUF819: Protein of un 84.1 20 0.00044 40.3 13.9 59 625-685 24-85 (378)
89 PF05982 DUF897: Domain of unk 83.7 6.4 0.00014 43.7 9.7 90 632-724 182-277 (327)
90 PF01758 SBF: Sodium Bile acid 83.5 12 0.00025 37.3 10.7 25 659-683 2-26 (187)
91 PRK14855 nhaA pH-dependent sod 83.3 8.7 0.00019 44.0 10.8 101 652-758 63-170 (423)
92 TIGR00844 c_cpa1 na(+)/h(+) an 83.2 12 0.00025 46.1 12.4 26 653-678 293-318 (810)
93 COG3329 Predicted permease [Ge 82.8 9 0.0002 42.6 10.2 92 627-722 218-319 (372)
94 TIGR02680 conserved hypothetic 82.7 1.7E+02 0.0037 38.4 25.4 37 270-306 349-385 (1353)
95 COG1346 LrgB Putative effector 82.1 75 0.0016 34.1 16.3 92 616-710 21-118 (230)
96 PF12128 DUF3584: Protein of u 82.1 1.7E+02 0.0036 37.8 24.5 41 204-244 490-530 (1201)
97 PF05276 SH3BP5: SH3 domain-bi 81.8 25 0.00053 37.6 12.8 152 154-319 20-172 (239)
98 PF04012 PspA_IM30: PspA/IM30 81.6 66 0.0014 32.9 16.9 60 150-221 32-91 (221)
99 COG2985 Predicted permease [Ge 81.6 6.9 0.00015 45.7 9.2 127 604-732 368-507 (544)
100 COG1380 Putative effector of m 81.2 18 0.0004 35.3 10.7 100 602-706 7-114 (128)
101 COG0786 GltS Na+/glutamate sym 80.1 7.7 0.00017 44.1 8.8 145 605-753 13-167 (404)
102 PF12128 DUF3584: Protein of u 79.8 1.8E+02 0.004 37.5 21.5 48 268-315 469-516 (1201)
103 KOG0161 Myosin class II heavy 79.8 1.5E+02 0.0033 40.3 21.1 130 184-326 1565-1697(1930)
104 COG3180 AbrB Putative ammonia 79.7 54 0.0012 37.0 15.0 76 601-681 6-84 (352)
105 COG5420 Uncharacterized conser 79.5 5.7 0.00012 34.9 5.9 51 296-346 6-62 (71)
106 PRK10698 phage shock protein P 79.2 88 0.0019 32.8 17.0 31 151-181 34-64 (222)
107 PRK10476 multidrug resistance 78.3 35 0.00075 37.0 12.9 47 197-243 131-177 (346)
108 COG1842 PspA Phage shock prote 78.1 99 0.0021 32.8 16.2 51 150-200 33-83 (225)
109 COG0385 Predicted Na+-dependen 78.1 10 0.00022 42.1 8.8 52 656-708 39-93 (319)
110 PF13514 AAA_27: AAA domain 78.0 2.1E+02 0.0045 36.5 22.4 27 158-184 746-772 (1111)
111 PRK04288 antiholin-like protei 77.8 1E+02 0.0023 33.0 16.5 50 660-710 72-121 (232)
112 PF12718 Tropomyosin_1: Tropom 77.8 23 0.00051 34.8 10.3 61 269-329 15-75 (143)
113 PF12777 MT: Microtubule-bindi 77.4 18 0.00039 39.8 10.5 94 270-366 10-103 (344)
114 PF03547 Mem_trans: Membrane t 77.0 36 0.00079 36.8 12.6 107 625-735 243-357 (385)
115 PF05817 Ribophorin_II: Oligos 76.8 9.7 0.00021 45.6 8.8 90 625-737 544-633 (636)
116 PRK11281 hypothetical protein; 76.4 59 0.0013 41.7 15.7 103 196-304 62-164 (1113)
117 TIGR00659 conserved hypothetic 76.3 1E+02 0.0023 32.9 15.2 51 659-710 65-115 (226)
118 PRK14854 nhaA pH-dependent sod 75.5 23 0.0005 40.3 10.8 101 652-758 56-163 (383)
119 COG2855 Predicted membrane pro 74.9 39 0.00085 37.9 12.2 50 645-694 270-321 (334)
120 KOG3826 Na+/H+ antiporter [Ino 74.0 3 6.5E-05 44.5 3.4 130 606-735 102-238 (252)
121 TIGR00634 recN DNA repair prot 73.9 1.2E+02 0.0027 35.5 16.6 16 228-243 276-291 (563)
122 PRK09561 nhaA pH-dependent sod 72.6 28 0.00061 39.7 10.6 102 652-758 59-167 (388)
123 PRK12460 2-keto-3-deoxyglucona 71.7 37 0.00081 37.7 11.1 115 632-748 18-139 (312)
124 PRK09560 nhaA pH-dependent sod 71.6 29 0.00062 39.6 10.4 102 652-758 59-167 (389)
125 PRK12472 hypothetical protein; 71.4 94 0.002 36.7 14.5 100 214-354 221-320 (508)
126 PRK04863 mukB cell division pr 71.1 3.2E+02 0.007 36.5 20.7 22 150-171 232-253 (1486)
127 PF03601 Cons_hypoth698: Conse 71.0 10 0.00023 41.4 6.7 80 604-686 211-303 (305)
128 TIGR00841 bass bile acid trans 70.8 39 0.00085 36.2 10.8 51 658-710 11-65 (286)
129 TIGR00773 NhaA Na+/H+ antiport 70.5 38 0.00083 38.4 11.1 102 652-758 52-160 (373)
130 PF07888 CALCOCO1: Calcium bin 69.4 2.6E+02 0.0056 33.6 18.4 32 58-89 64-103 (546)
131 COG4651 RosB Kef-type K+ trans 68.9 1.2E+02 0.0026 34.3 14.1 125 625-753 247-375 (408)
132 COG0798 ACR3 Arsenite efflux p 68.8 67 0.0014 36.2 12.3 54 629-682 20-78 (342)
133 TIGR00998 8a0101 efflux pump m 67.6 1.2E+02 0.0027 32.2 13.7 20 220-239 117-136 (334)
134 COG3524 KpsE Capsule polysacch 67.4 1.6E+02 0.0035 33.3 14.5 64 167-245 142-206 (372)
135 PRK04778 septation ring format 67.0 2.7E+02 0.0058 33.0 20.7 158 190-366 278-439 (569)
136 PF08826 DMPK_coil: DMPK coile 67.0 45 0.00097 29.0 8.3 51 266-316 9-59 (61)
137 PRK10476 multidrug resistance 66.7 1.5E+02 0.0032 32.2 14.4 22 151-172 82-103 (346)
138 PRK03598 putative efflux pump 66.1 96 0.0021 33.4 12.7 93 152-245 78-172 (331)
139 PF04172 LrgB: LrgB-like famil 66.0 1.8E+02 0.004 30.7 14.6 75 660-737 56-130 (215)
140 PRK02224 chromosome segregatio 65.9 3.2E+02 0.007 33.5 21.9 36 150-185 518-553 (880)
141 PF06123 CreD: Inner membrane 65.7 31 0.00067 39.8 9.3 115 608-735 306-425 (430)
142 TIGR02977 phageshock_pspA phag 65.1 1.8E+02 0.0038 30.2 20.2 48 150-197 33-80 (219)
143 PF01889 DUF63: Membrane prote 65.0 1.7E+02 0.0037 32.1 14.2 41 715-755 146-188 (273)
144 TIGR00932 2a37 transporter, mo 64.6 23 0.00049 36.9 7.4 16 625-640 226-241 (273)
145 TIGR00840 b_cpa1 sodium/hydrog 64.1 61 0.0013 38.4 11.5 61 611-672 245-311 (559)
146 PF12777 MT: Microtubule-bindi 63.8 36 0.00078 37.5 9.1 50 262-311 215-264 (344)
147 PHA02562 46 endonuclease subun 63.7 1.2E+02 0.0026 34.7 13.6 32 204-235 166-198 (562)
148 PF06965 Na_H_antiport_1: Na+/ 63.6 17 0.00037 41.2 6.7 102 651-758 54-163 (378)
149 PRK12704 phosphodiesterase; Pr 63.4 3.1E+02 0.0068 32.5 19.0 25 270-294 105-129 (520)
150 COG3329 Predicted permease [Ge 62.5 99 0.0022 34.8 11.9 108 627-739 17-131 (372)
151 COG1566 EmrA Multidrug resista 62.3 99 0.0021 34.9 12.2 89 150-242 86-175 (352)
152 PF03390 2HCT: 2-hydroxycarbox 60.4 79 0.0017 36.5 11.2 109 603-716 31-154 (414)
153 TIGR00606 rad50 rad50. This fa 59.4 5.3E+02 0.011 33.8 22.3 25 149-173 710-734 (1311)
154 PRK11715 inner membrane protei 59.3 47 0.001 38.4 9.3 113 609-734 313-430 (436)
155 PF10136 SpecificRecomb: Site- 58.9 3.7E+02 0.008 32.9 16.7 58 276-336 211-281 (643)
156 PRK15136 multidrug efflux syst 58.7 1.4E+02 0.0031 33.4 12.7 18 151-168 95-112 (390)
157 PF03323 GerA: Bacillus/Clostr 58.5 95 0.0021 36.1 11.6 64 604-670 326-398 (470)
158 KOG0971 Microtubule-associated 58.4 5.1E+02 0.011 33.3 17.7 167 151-349 300-482 (1243)
159 PF03977 OAD_beta: Na+-transpo 57.6 2.1E+02 0.0045 32.7 13.4 111 609-722 7-130 (360)
160 PF13514 AAA_27: AAA domain 57.2 4.4E+02 0.0094 33.8 17.9 40 267-306 603-642 (1111)
161 TIGR00998 8a0101 efflux pump m 57.1 2.7E+02 0.0058 29.7 14.7 26 220-245 110-135 (334)
162 PRK10929 putative mechanosensi 57.0 5.6E+02 0.012 33.4 31.2 16 228-243 147-162 (1109)
163 PF10174 Cast: RIM-binding pro 56.5 3.2E+02 0.0069 34.2 15.9 84 270-361 123-206 (775)
164 TIGR00793 kdgT 2-keto-3-deoxyg 56.4 43 0.00093 37.3 8.0 115 632-748 18-144 (314)
165 PRK10711 hypothetical protein; 56.3 2.9E+02 0.0062 29.8 15.5 51 659-710 66-116 (231)
166 PHA02562 46 endonuclease subun 56.2 3.7E+02 0.0079 31.0 24.1 29 217-245 254-282 (562)
167 TIGR03136 malonate_biotin Na+- 56.1 2.1E+02 0.0046 33.0 13.3 111 609-722 27-167 (399)
168 PHA02557 22 prohead core prote 55.9 3.2E+02 0.0069 30.2 18.8 59 277-335 143-201 (271)
169 COG4214 XylH ABC-type xylose t 55.6 3.8E+02 0.0082 31.0 16.1 35 603-639 111-149 (394)
170 TIGR00927 2A1904 K+-dependent 55.6 24 0.00051 44.5 6.4 47 486-538 926-978 (1096)
171 PRK04125 murein hydrolase regu 55.6 1E+02 0.0022 30.8 9.7 75 659-736 39-119 (141)
172 TIGR02971 heterocyst_DevB ABC 55.5 2.9E+02 0.0063 29.6 16.0 18 347-364 188-205 (327)
173 PRK09973 putative outer membra 55.0 37 0.00081 31.3 6.1 44 283-331 16-59 (85)
174 COG3883 Uncharacterized protei 54.8 61 0.0013 35.4 8.7 63 264-326 34-96 (265)
175 TIGR00831 a_cpa1 Na+/H+ antipo 54.6 1.2E+02 0.0026 35.4 11.7 60 614-674 219-285 (525)
176 PF06160 EzrA: Septation ring 53.8 2.6E+02 0.0056 33.2 14.3 60 190-249 274-337 (560)
177 PRK09039 hypothetical protein; 53.1 3.7E+02 0.008 30.1 17.0 13 316-328 152-164 (343)
178 PF03419 Peptidase_U4: Sporula 53.0 2E+02 0.0043 31.0 12.2 64 601-672 12-78 (293)
179 PF06160 EzrA: Septation ring 52.6 4.7E+02 0.01 31.1 18.6 143 151-320 354-496 (560)
180 PRK03598 putative efflux pump 52.3 2.7E+02 0.0058 30.1 13.2 25 269-293 146-170 (331)
181 KOG0250 DNA repair protein RAD 52.0 6.6E+02 0.014 32.7 19.4 163 149-326 256-438 (1074)
182 COG1579 Zn-ribbon protein, pos 51.8 3.4E+02 0.0075 29.3 20.9 66 268-333 89-154 (239)
183 COG1566 EmrA Multidrug resista 51.6 1.3E+02 0.0029 33.9 11.0 51 262-312 85-143 (352)
184 TIGR03869 F420-0_ABCperm propo 51.5 1.3E+02 0.0027 33.6 10.7 43 625-667 53-104 (325)
185 PF05278 PEARLI-4: Arabidopsis 51.1 3.8E+02 0.0082 29.6 15.3 42 267-308 220-261 (269)
186 COG3371 Predicted membrane pro 50.2 2.6E+02 0.0056 29.2 11.8 59 622-683 73-131 (181)
187 TIGR02209 ftsL_broad cell divi 50.2 67 0.0014 28.0 6.8 45 272-316 21-65 (85)
188 TIGR00793 kdgT 2-keto-3-deoxyg 50.1 17 0.00036 40.4 3.7 72 632-707 177-248 (314)
189 PF05982 DUF897: Domain of unk 50.0 1.6E+02 0.0035 33.2 11.2 104 631-739 4-114 (327)
190 TIGR03319 YmdA_YtgF conserved 49.9 5.1E+02 0.011 30.7 20.6 38 270-307 92-129 (514)
191 PF00261 Tropomyosin: Tropomyo 49.8 3.3E+02 0.0072 28.6 20.8 152 149-322 9-167 (237)
192 PF08838 DUF1811: Protein of u 49.4 20 0.00043 34.0 3.6 24 297-320 8-31 (102)
193 TIGR00400 mgtE Mg2+ transporte 49.2 3.7E+02 0.0081 30.8 14.3 14 725-738 403-417 (449)
194 TIGR02359 thiW thiW protein. L 49.2 3E+02 0.0065 27.9 12.2 44 628-671 34-85 (160)
195 PRK15136 multidrug efflux syst 49.1 3.9E+02 0.0084 30.0 14.2 24 216-239 125-148 (390)
196 COG1730 GIM5 Predicted prefold 49.0 2.9E+02 0.0064 27.7 13.2 100 218-317 23-143 (145)
197 PF04728 LPP: Lipoprotein leuc 49.0 1.1E+02 0.0024 26.4 7.6 48 282-329 3-50 (56)
198 KOG0979 Structural maintenance 48.8 6.1E+02 0.013 32.8 16.6 56 139-201 165-220 (1072)
199 PRK03784 vtamin B12-transporte 48.5 2.4E+02 0.0052 31.6 12.3 48 619-667 53-109 (331)
200 PF03812 KdgT: 2-keto-3-deoxyg 47.2 31 0.00067 38.4 5.2 71 632-706 177-247 (314)
201 PF05276 SH3BP5: SH3 domain-bi 46.7 1.6E+02 0.0035 31.6 10.3 95 262-360 8-143 (239)
202 COG1269 NtpI Archaeal/vacuolar 46.7 3.5E+02 0.0076 32.9 14.2 217 513-753 370-607 (660)
203 PF05884 ZYG-11_interact: Inte 46.5 4.7E+02 0.01 29.4 16.0 30 712-741 244-273 (299)
204 PF07136 DUF1385: Protein of u 46.5 3.1E+02 0.0068 29.6 12.3 87 663-750 118-205 (236)
205 PRK10698 phage shock protein P 46.1 3.4E+02 0.0073 28.6 12.3 48 269-316 86-133 (222)
206 PRK11281 hypothetical protein; 45.9 2.1E+02 0.0046 37.0 12.7 47 259-305 126-172 (1113)
207 PF06570 DUF1129: Protein of u 45.7 3.5E+02 0.0076 27.7 12.6 10 710-719 179-188 (206)
208 PF08826 DMPK_coil: DMPK coile 45.7 2.1E+02 0.0045 25.0 8.8 16 206-221 2-17 (61)
209 PF04977 DivIC: Septum formati 45.1 53 0.0012 27.8 5.3 34 275-308 17-50 (80)
210 PF14362 DUF4407: Domain of un 45.1 1.4E+02 0.0029 32.1 9.5 9 725-733 98-106 (301)
211 PF05529 Bap31: B-cell recepto 44.7 1.6E+02 0.0034 29.8 9.4 37 270-306 156-192 (192)
212 COG3493 CitS Na+/citrate sympo 44.6 1.2E+02 0.0027 34.9 9.4 103 603-710 48-165 (438)
213 TIGR02231 conserved hypothetic 44.5 1.3E+02 0.0028 34.9 9.9 43 273-315 69-111 (525)
214 COG3263 NhaP-type Na+/H+ and K 44.3 1.4E+02 0.003 35.4 9.7 37 653-689 270-306 (574)
215 TIGR02231 conserved hypothetic 44.1 2.6E+02 0.0057 32.5 12.3 45 266-310 129-173 (525)
216 PRK03947 prefoldin subunit alp 43.8 3E+02 0.0065 26.3 11.5 44 266-309 92-135 (140)
217 PRK02224 chromosome segregatio 43.7 7.1E+02 0.015 30.6 25.6 46 150-195 323-368 (880)
218 TIGR02854 spore_II_GA sigma-E 43.6 2.2E+02 0.0048 30.9 10.9 64 601-672 12-78 (288)
219 COG5505 Predicted integral mem 43.6 4.8E+02 0.01 29.8 13.3 99 604-705 7-108 (384)
220 PF10168 Nup88: Nuclear pore c 43.5 1.8E+02 0.004 35.7 11.3 57 290-346 580-646 (717)
221 KOG2264 Exostosin EXT1L [Signa 43.5 1.5E+02 0.0033 35.8 10.1 82 234-328 51-132 (907)
222 COG0497 RecN ATPase involved i 43.3 5.5E+02 0.012 31.1 14.7 26 148-173 181-206 (557)
223 PF03594 BenE: Benzoate membra 43.3 4.3E+02 0.0093 30.5 13.3 28 726-754 224-251 (378)
224 KOG0250 DNA repair protein RAD 42.4 9.1E+02 0.02 31.5 18.6 30 468-497 607-637 (1074)
225 PRK03612 spermidine synthase; 42.0 1.7E+02 0.0036 34.3 10.3 20 628-647 54-73 (521)
226 PF01032 FecCD: FecCD transpor 42.0 1.1E+02 0.0025 33.4 8.5 47 621-668 39-94 (311)
227 PF13386 DsbD_2: Cytochrome C 41.9 2.2E+02 0.0047 28.8 9.9 43 628-670 42-86 (199)
228 TIGR03480 HpnN hopanoid biosyn 41.9 2.8E+02 0.0061 34.3 12.6 23 712-734 834-856 (862)
229 PF13166 AAA_13: AAA domain 41.9 6.8E+02 0.015 29.9 17.7 141 150-329 324-464 (712)
230 PF11727 ISG65-75: Invariant s 41.7 2.2E+02 0.0048 30.8 10.5 73 274-346 58-139 (286)
231 PF03977 OAD_beta: Na+-transpo 41.4 2.1E+02 0.0047 32.6 10.5 138 588-737 181-324 (360)
232 PF02632 BioY: BioY family; I 41.4 3.6E+02 0.0078 26.8 11.1 107 603-719 9-124 (148)
233 COG3883 Uncharacterized protei 41.1 1.2E+02 0.0026 33.2 8.4 57 270-326 33-89 (265)
234 COG1301 GltP Na+/H+-dicarboxyl 40.9 6.4E+02 0.014 29.3 14.4 88 652-739 186-283 (415)
235 PF04018 DUF368: Domain of unk 39.9 2E+02 0.0044 31.2 9.8 31 608-641 67-97 (257)
236 PF09325 Vps5: Vps5 C terminal 39.8 4.2E+02 0.009 26.9 14.5 82 218-310 121-202 (236)
237 PRK15127 multidrug efflux syst 39.8 2.3E+02 0.0049 36.1 11.7 26 710-735 1006-1031(1049)
238 PF05684 DUF819: Protein of un 39.7 5.3E+02 0.011 29.4 13.4 81 652-734 264-346 (378)
239 PRK14695 serine/threonine tran 39.5 2.6E+02 0.0056 31.2 10.8 34 652-685 99-132 (319)
240 PRK11637 AmiB activator; Provi 39.4 6.2E+02 0.013 28.7 21.4 29 281-309 197-225 (428)
241 PF03176 MMPL: MMPL family; I 39.4 78 0.0017 33.9 6.7 29 708-736 277-305 (333)
242 PRK10929 putative mechanosensi 39.4 1E+03 0.022 31.2 17.4 90 196-295 47-136 (1109)
243 PRK10555 aminoglycoside/multid 39.3 2.1E+02 0.0045 36.4 11.2 30 711-740 1004-1033(1037)
244 PRK10869 recombination and rep 39.0 7.4E+02 0.016 29.5 17.3 22 148-169 181-202 (553)
245 smart00039 CRF corticotropin-r 38.9 44 0.00095 27.0 3.5 29 148-176 9-39 (40)
246 TIGR00927 2A1904 K+-dependent 38.3 1.5E+02 0.0032 37.9 9.4 28 601-628 937-967 (1096)
247 COG2433 Uncharacterized conser 38.3 96 0.0021 37.5 7.6 49 269-317 416-464 (652)
248 PLN03223 Polycystin cation cha 38.1 1.3E+02 0.0029 39.6 9.1 82 212-310 1542-1623(1634)
249 COG3004 NhaA Na+/H+ antiporter 37.5 2.2E+02 0.0049 32.5 9.8 91 661-757 71-169 (390)
250 PRK15396 murein lipoprotein; P 37.4 1.1E+02 0.0023 27.9 6.1 42 282-328 16-57 (78)
251 TIGR00915 2A0602 The (Largely 37.2 2.1E+02 0.0046 36.3 10.9 25 712-736 1006-1030(1044)
252 COG1033 Predicted exporters of 37.2 4.8E+02 0.01 32.4 13.4 33 699-731 308-344 (727)
253 COG4059 MtrE Tetrahydromethano 37.1 4.2E+02 0.0092 28.9 11.3 102 611-721 70-174 (304)
254 PF08317 Spc7: Spc7 kinetochor 37.0 6.1E+02 0.013 28.0 19.8 46 268-313 209-254 (325)
255 KOG4657 Uncharacterized conser 37.0 5.9E+02 0.013 27.8 13.8 74 267-343 85-164 (246)
256 PF06810 Phage_GP20: Phage min 36.8 2.5E+02 0.0055 28.1 9.3 50 268-317 20-72 (155)
257 TIGR01109 Na_pump_decarbB sodi 36.8 1.5E+02 0.0032 33.7 8.3 139 588-738 181-325 (354)
258 TIGR00771 DcuC c4-dicarboxylat 36.7 4.1E+02 0.009 30.1 12.0 36 714-749 343-378 (388)
259 PRK15477 oxaloacetate decarbox 36.5 1.7E+02 0.0036 33.9 8.8 139 588-738 252-396 (433)
260 TIGR01843 type_I_hlyD type I s 36.4 6E+02 0.013 27.7 20.6 39 268-306 196-234 (423)
261 PRK15476 oxaloacetate decarbox 36.4 1.7E+02 0.0037 33.9 8.8 139 588-738 252-396 (433)
262 PRK14471 F0F1 ATP synthase sub 36.3 4.3E+02 0.0093 26.0 11.2 88 272-362 50-141 (164)
263 PRK15475 oxaloacetate decarbox 36.3 1.7E+02 0.0037 33.8 8.8 139 588-738 252-396 (433)
264 TIGR03136 malonate_biotin Na+- 36.1 1.6E+02 0.0035 33.9 8.6 139 588-738 218-362 (399)
265 PF05297 Herpes_LMP1: Herpesvi 35.9 12 0.00026 41.3 0.0 22 602-623 54-75 (381)
266 PRK10440 iron-enterobactin tra 35.8 2.8E+02 0.006 31.0 10.4 45 625-669 59-112 (330)
267 KOG1962 B-cell receptor-associ 35.7 3E+02 0.0065 29.4 10.0 39 268-306 151-189 (216)
268 PF06177 QueT: QueT transporte 35.6 2.7E+02 0.0059 27.9 9.3 41 683-723 94-137 (152)
269 PRK09776 putative diguanylate 35.4 9.5E+02 0.021 29.7 17.0 21 514-534 35-55 (1092)
270 PF03788 LrgA: LrgA family; I 35.2 3.1E+02 0.0066 25.5 8.9 44 655-698 47-90 (96)
271 COG3127 Predicted ABC-type tra 35.0 8.1E+02 0.017 31.0 14.5 36 601-638 303-338 (829)
272 PRK14011 prefoldin subunit alp 34.7 4.8E+02 0.01 26.1 11.0 87 218-304 20-124 (144)
273 COG5336 Uncharacterized protei 34.6 79 0.0017 30.7 5.1 39 602-640 48-88 (116)
274 PRK11578 macrolide transporter 34.6 2.8E+02 0.0061 30.5 10.1 17 221-237 116-132 (370)
275 COG4389 Site-specific recombin 34.3 1.8E+02 0.004 34.5 8.8 32 267-298 221-258 (677)
276 PRK15396 murein lipoprotein; P 34.0 1.2E+02 0.0025 27.7 5.8 44 286-329 29-72 (78)
277 PRK01821 hypothetical protein; 33.7 3.8E+02 0.0083 26.5 9.8 75 659-736 41-121 (133)
278 KOG3764 Vesicular amine transp 33.3 1.3E+02 0.0028 35.2 7.5 33 610-642 320-355 (464)
279 PRK10441 iron-enterobactin tra 33.2 3.3E+02 0.0071 30.5 10.4 43 625-667 60-111 (335)
280 cd00632 Prefoldin_beta Prefold 32.9 2.5E+02 0.0054 25.8 8.0 28 283-310 71-98 (105)
281 TIGR00293 prefoldin, archaeal 32.8 2.1E+02 0.0046 26.7 7.7 38 276-313 87-124 (126)
282 COG4666 TRAP-type uncharacteri 32.7 3.2E+02 0.007 33.4 10.7 20 625-644 471-490 (642)
283 PF12325 TMF_TATA_bd: TATA ele 32.3 1.8E+02 0.0038 28.3 7.1 47 269-315 17-63 (120)
284 PF13829 DUF4191: Domain of un 32.3 1E+02 0.0022 33.0 6.0 34 698-732 40-73 (224)
285 PRK01658 holin-like protein; V 32.3 4.7E+02 0.01 25.4 10.0 75 659-736 36-116 (122)
286 PRK09973 putative outer membra 32.2 1.5E+02 0.0033 27.5 6.3 47 283-329 25-71 (85)
287 PF03591 AzlC: AzlC protein; 32.1 4.9E+02 0.011 25.4 10.6 15 627-641 2-16 (143)
288 PRK10503 multidrug efflux syst 32.0 3.5E+02 0.0076 34.5 11.6 25 711-735 1000-1024(1040)
289 TIGR01005 eps_transp_fam exopo 31.9 1E+03 0.022 29.0 19.3 21 268-288 244-264 (754)
290 PF05262 Borrelia_P83: Borreli 31.9 8.9E+02 0.019 28.9 13.9 22 175-196 205-226 (489)
291 PF02183 HALZ: Homeobox associ 31.5 1E+02 0.0022 25.2 4.5 35 279-313 6-43 (45)
292 PF11286 DUF3087: Protein of u 31.5 1.2E+02 0.0025 31.3 6.0 65 671-735 5-72 (165)
293 TIGR01109 Na_pump_decarbB sodi 31.3 3.2E+02 0.0068 31.2 9.7 82 610-691 6-96 (354)
294 PF11855 DUF3375: Protein of u 31.2 38 0.00082 39.2 2.9 53 286-339 141-193 (478)
295 PRK13628 serine/threonine tran 31.0 3.7E+02 0.008 30.7 10.6 35 651-685 184-218 (402)
296 PF11839 DUF3359: Protein of u 30.9 2.6E+02 0.0055 26.6 7.7 56 294-359 33-88 (96)
297 PRK11010 ampG muropeptide tran 30.9 8.4E+02 0.018 27.8 13.6 14 610-623 59-72 (491)
298 PF04156 IncA: IncA protein; 30.8 5.5E+02 0.012 25.5 14.4 31 282-312 158-188 (191)
299 PRK10246 exonuclease subunit S 30.4 1.3E+03 0.028 29.7 24.2 10 279-288 367-376 (1047)
300 PF05565 Sipho_Gp157: Siphovir 30.2 1.1E+02 0.0025 30.4 5.7 35 277-311 49-83 (162)
301 TIGR00606 rad50 rad50. This fa 30.1 1.4E+03 0.03 30.1 20.9 15 512-526 573-587 (1311)
302 PRK15060 L-dehydroascorbate tr 30.1 4.3E+02 0.0092 30.7 10.9 118 604-750 276-396 (425)
303 PF12329 TMF_DNA_bd: TATA elem 30.0 96 0.0021 27.5 4.6 41 275-315 33-73 (74)
304 cd00632 Prefoldin_beta Prefold 30.0 1.5E+02 0.0031 27.4 6.0 43 266-308 61-103 (105)
305 PRK03612 spermidine synthase; 29.8 8E+02 0.017 28.9 13.2 13 662-674 118-130 (521)
306 PF02554 CstA: Carbon starvati 29.8 6.2E+02 0.013 29.3 11.9 90 528-640 7-97 (376)
307 PRK03918 chromosome segregatio 29.5 1.1E+03 0.024 28.8 21.8 23 290-312 260-282 (880)
308 PRK00409 recombination and DNA 29.5 9.8E+02 0.021 29.9 14.4 35 209-243 493-527 (782)
309 TIGR00833 actII Transport prot 29.4 2.8E+02 0.006 34.7 10.0 24 712-735 311-334 (910)
310 PF03649 UPF0014: Uncharacteri 29.3 3.8E+02 0.0082 28.9 9.7 24 687-710 39-62 (250)
311 PRK09578 periplasmic multidrug 29.2 2.1E+02 0.0045 31.7 8.1 17 223-239 113-129 (385)
312 PF05278 PEARLI-4: Arabidopsis 29.2 8.2E+02 0.018 27.1 14.5 49 266-314 212-260 (269)
313 PRK06231 F0F1 ATP synthase sub 28.7 6.8E+02 0.015 26.0 12.5 43 321-363 137-182 (205)
314 PRK10578 hypothetical protein; 28.6 7.2E+02 0.016 26.3 14.8 36 603-640 5-40 (207)
315 PF05262 Borrelia_P83: Borreli 28.0 8.4E+02 0.018 29.1 12.9 19 149-167 193-211 (489)
316 PF04129 Vps52: Vps52 / Sac2 f 28.0 2.3E+02 0.0049 33.2 8.5 56 262-317 8-63 (508)
317 TIGR01113 mtrE N5-methyltetrah 28.0 8.7E+02 0.019 27.0 14.4 102 613-723 66-170 (283)
318 PRK00972 tetrahydromethanopter 27.8 8.8E+02 0.019 27.0 14.8 94 621-723 80-176 (292)
319 PF05335 DUF745: Protein of un 27.6 7.3E+02 0.016 25.9 18.0 142 166-322 39-184 (188)
320 PRK11283 gltP glutamate/aspart 27.4 5.5E+02 0.012 29.7 11.2 38 651-688 201-238 (437)
321 PRK00409 recombination and DNA 27.2 7.1E+02 0.015 31.1 12.7 50 266-315 518-567 (782)
322 PRK03947 prefoldin subunit alp 26.7 1.6E+02 0.0035 28.2 5.9 45 272-316 91-135 (140)
323 PRK11578 macrolide transporter 26.7 5.5E+02 0.012 28.2 10.7 41 273-313 97-137 (370)
324 KOG1760 Molecular chaperone Pr 26.7 3E+02 0.0064 27.4 7.6 32 291-322 83-116 (131)
325 PRK09343 prefoldin subunit bet 26.6 5.8E+02 0.013 24.5 10.1 41 268-308 71-111 (121)
326 PF04899 MbeD_MobD: MbeD/MobD 26.4 4.7E+02 0.01 23.4 8.6 63 231-314 5-67 (70)
327 PRK09777 fecD iron-dicitrate t 26.2 5.5E+02 0.012 28.6 10.6 43 625-667 51-102 (318)
328 PF05667 DUF812: Protein of un 26.1 1.3E+03 0.027 28.2 15.9 37 146-182 326-362 (594)
329 TIGR03480 HpnN hopanoid biosyn 26.1 5.4E+02 0.012 31.9 11.5 14 610-623 280-293 (862)
330 TIGR00914 2A0601 heavy metal e 26.1 2.4E+02 0.0052 35.8 8.7 26 712-737 1014-1039(1051)
331 PF07888 CALCOCO1: Calcium bin 26.0 1.2E+03 0.027 28.2 25.8 34 282-315 262-295 (546)
332 PF04206 MtrE: Tetrahydrometha 26.0 9.2E+02 0.02 26.6 13.7 101 614-723 67-170 (269)
333 TIGR01299 synapt_SV2 synaptic 25.9 6.4E+02 0.014 31.2 12.0 28 610-637 609-637 (742)
334 PF03649 UPF0014: Uncharacteri 25.8 6.2E+02 0.014 27.3 10.6 11 632-642 48-58 (250)
335 TIGR00843 benE benzoate transp 25.8 6.8E+02 0.015 28.9 11.5 44 601-647 109-154 (395)
336 PRK15030 multidrug efflux syst 25.7 2.5E+02 0.0054 31.4 8.0 13 225-237 117-129 (397)
337 KOG2189 Vacuolar H+-ATPase V0 25.5 1.1E+02 0.0024 37.9 5.5 39 274-312 91-129 (829)
338 KOG4403 Cell surface glycoprot 25.5 8.1E+02 0.018 29.1 11.8 67 147-236 258-327 (575)
339 COG3333 Uncharacterized protei 25.4 91 0.002 36.7 4.6 37 603-643 411-447 (504)
340 PRK00888 ftsB cell division pr 25.4 1.3E+02 0.0028 28.3 4.9 35 276-310 28-62 (105)
341 PF05911 DUF869: Plant protein 25.1 1.5E+03 0.032 28.7 16.9 123 150-310 47-169 (769)
342 PRK09577 multidrug efflux prot 25.1 5.5E+02 0.012 32.8 11.6 28 711-738 1000-1027(1032)
343 PRK10642 proline/glycine betai 25.1 1E+03 0.022 26.8 12.7 39 611-650 72-110 (490)
344 KOG1937 Uncharacterized conser 24.9 1.1E+03 0.023 28.3 12.7 41 274-314 388-428 (521)
345 PF06808 DctM: DctM-like trans 24.6 1.1E+03 0.023 26.9 16.0 119 601-748 273-394 (416)
346 COG0387 ChaA Ca2+/H+ antiporte 24.3 8.4E+02 0.018 28.1 11.7 20 625-644 32-51 (368)
347 PRK07352 F0F1 ATP synthase sub 24.3 7.2E+02 0.016 24.8 12.5 43 320-362 107-152 (174)
348 PF05008 V-SNARE: Vesicle tran 24.3 2.4E+02 0.0051 24.3 6.0 43 265-307 22-65 (79)
349 PF05266 DUF724: Protein of un 24.2 3.5E+02 0.0076 28.1 8.1 55 274-328 130-184 (190)
350 COG4942 Membrane-bound metallo 24.1 1.2E+03 0.026 27.4 21.6 38 281-318 209-246 (420)
351 COG1842 PspA Phage shock prote 24.0 6.8E+02 0.015 26.7 10.3 74 268-344 31-104 (225)
352 PF04111 APG6: Autophagy prote 23.8 6E+02 0.013 28.1 10.3 11 338-348 126-136 (314)
353 COG1268 BioY Uncharacterized c 23.7 7.2E+02 0.016 25.9 10.2 62 603-673 38-107 (184)
354 PF11839 DUF3359: Protein of u 23.7 4.7E+02 0.01 24.8 8.1 31 306-336 31-61 (96)
355 PRK15030 multidrug efflux syst 23.7 3.3E+02 0.0072 30.4 8.5 18 151-168 99-116 (397)
356 COG4956 Integral membrane prot 23.7 3.9E+02 0.0085 30.4 8.7 10 686-695 82-91 (356)
357 cd07605 I-BAR_IMD Inverse (I)- 23.5 9.2E+02 0.02 25.7 19.6 125 145-297 17-141 (223)
358 PF05145 AmoA: Putative ammoni 23.5 1E+03 0.022 26.3 12.0 23 658-680 28-50 (318)
359 COG0609 FepD ABC-type Fe3+-sid 23.5 6.8E+02 0.015 28.0 10.7 16 625-640 54-69 (334)
360 PRK12438 hypothetical protein; 23.5 1.7E+03 0.038 28.9 16.8 20 658-677 216-235 (991)
361 PF06120 Phage_HK97_TLTM: Tail 23.4 1.1E+03 0.023 26.5 18.0 135 173-313 38-172 (301)
362 COG0025 NhaP NhaP-type Na+/H+ 23.2 1.2E+03 0.025 26.9 17.1 56 625-681 245-308 (429)
363 PRK14472 F0F1 ATP synthase sub 23.1 7.6E+02 0.016 24.6 12.3 88 273-363 61-152 (175)
364 PF05082 Rop-like: Rop-like; 23.0 1.2E+02 0.0025 27.0 3.8 58 297-358 3-64 (66)
365 PF10225 DUF2215: Uncharacteri 23.0 9.6E+02 0.021 25.8 11.4 29 617-645 55-83 (249)
366 PF15233 SYCE1: Synaptonemal c 22.9 1.9E+02 0.0042 28.8 5.6 40 271-310 9-48 (134)
367 TIGR00833 actII Transport prot 22.8 4.6E+02 0.01 32.9 10.2 13 664-676 810-822 (910)
368 TIGR01069 mutS2 MutS2 family p 22.7 1.6E+03 0.034 28.1 15.2 37 274-310 521-557 (771)
369 PRK05274 2-keto-3-deoxyglucona 22.6 2.5E+02 0.0055 31.3 7.2 86 661-748 53-146 (326)
370 PF00769 ERM: Ezrin/radixin/mo 22.6 9.7E+02 0.021 25.6 14.5 166 267-473 18-198 (246)
371 TIGR03185 DNA_S_dndD DNA sulfu 22.4 4.6E+02 0.01 31.4 9.8 37 290-326 422-458 (650)
372 TIGR02338 gimC_beta prefoldin, 22.4 6.4E+02 0.014 23.5 11.8 40 267-306 66-105 (110)
373 PRK13027 C4-dicarboxylate tran 22.1 7.3E+02 0.016 28.6 10.9 36 652-687 191-226 (421)
374 PF02996 Prefoldin: Prefoldin 21.8 2.1E+02 0.0046 26.2 5.5 45 265-309 74-118 (120)
375 PRK05771 V-type ATP synthase s 21.8 3.6E+02 0.0079 32.3 8.8 32 280-311 91-122 (646)
376 PRK05771 V-type ATP synthase s 21.7 1.2E+03 0.027 27.9 13.1 15 658-672 451-465 (646)
377 PF09852 DUF2079: Predicted me 21.7 7.4E+02 0.016 28.3 10.8 47 598-645 59-106 (449)
378 KOG2447 Oligosaccharyltransfer 21.6 2.6E+02 0.0057 31.0 6.8 17 626-642 195-211 (287)
379 PRK12911 bifunctional preprote 21.6 7.2E+02 0.016 33.2 11.5 23 710-732 1034-1056(1403)
380 PF10205 KLRAQ: Predicted coil 21.6 2.4E+02 0.0053 27.0 5.8 48 265-312 23-70 (102)
381 PRK10884 SH3 domain-containing 21.5 4.7E+02 0.01 27.5 8.5 83 210-310 85-167 (206)
382 PF09930 DUF2162: Predicted tr 21.3 5.3E+02 0.012 27.6 8.9 81 655-737 68-156 (224)
383 COG2035 Predicted membrane pro 21.3 4.4E+02 0.0095 29.2 8.5 35 609-646 69-105 (276)
384 cd07647 F-BAR_PSTPIP The F-BAR 21.2 7.6E+02 0.016 25.9 10.0 35 302-336 152-186 (239)
385 PRK14127 cell division protein 21.1 3E+02 0.0064 26.5 6.4 37 270-306 32-68 (109)
386 PRK10245 adrA diguanylate cycl 21.0 1.2E+03 0.025 26.0 13.4 44 601-645 64-114 (366)
387 PF08287 DASH_Spc19: Spc19; I 20.9 3.3E+02 0.0073 27.3 7.0 22 287-308 132-153 (153)
388 KOG1962 B-cell receptor-associ 20.8 2.8E+02 0.0061 29.7 6.7 49 268-316 158-206 (216)
389 KOG0977 Nuclear envelope prote 20.7 1.6E+03 0.034 27.4 16.6 78 268-353 148-225 (546)
390 TIGR00999 8a0102 Membrane Fusi 20.6 3.3E+02 0.0072 27.8 7.2 39 207-245 43-81 (265)
391 TIGR00946 2a69 he Auxin Efflux 20.5 1.1E+03 0.023 25.5 11.2 14 610-623 13-27 (321)
392 PRK04778 septation ring format 20.5 1.5E+03 0.032 27.0 18.5 33 150-184 258-290 (569)
393 TIGR01995 PTS-II-ABC-beta PTS 20.3 5.3E+02 0.011 31.2 9.7 25 617-642 160-184 (610)
394 PRK09579 multidrug efflux prot 20.3 6.5E+02 0.014 32.2 10.8 29 710-738 979-1007(1017)
395 COG1579 Zn-ribbon protein, pos 20.3 3.9E+02 0.0084 29.0 7.7 52 266-317 29-80 (239)
396 PRK11228 fecC iron-dicitrate t 20.2 6.4E+02 0.014 28.0 9.7 42 625-666 51-101 (323)
397 TIGR02971 heterocyst_DevB ABC 20.2 1.1E+03 0.023 25.3 12.7 39 275-313 90-128 (327)
398 PF14932 HAUS-augmin3: HAUS au 20.1 1.1E+03 0.023 25.3 11.4 99 211-325 27-125 (256)
399 PRK09859 multidrug efflux syst 20.1 2.6E+02 0.0057 31.0 6.7 67 151-242 95-161 (385)
400 PRK09903 putative transporter 20.1 8.2E+02 0.018 26.4 10.3 13 611-623 13-25 (314)
401 PRK15445 arsenical pump membra 20.1 1.2E+03 0.026 26.1 12.0 24 612-636 8-31 (427)
402 PRK09765 PTS system 2-O-a-mann 20.1 6.5E+02 0.014 30.5 10.4 30 512-541 285-314 (631)
403 cd00890 Prefoldin Prefoldin is 20.0 2.6E+02 0.0055 25.8 5.7 42 266-307 85-126 (129)
No 1
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=99.91 E-value=1.1e-23 Score=239.12 Aligned_cols=156 Identities=40% Similarity=0.650 Sum_probs=146.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHhhcCChhHHhhh
Q 004361 601 ASLFDVLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSM 680 (759)
Q Consensus 601 ~lLlqL~LILlaA~LLg~LlrRL~gLP~VVGyILAGIILGPsgLGlI~~~eiLe~LAEIGLIfLLFlaGLELDl~~LKr~ 680 (759)
.++++++++++++.++.++++|+ ++|+++|||++|+++||+++|++++.+.+..++++|++|+||.+|+|+|++.+|++
T Consensus 5 ~~l~~~~~~l~~a~i~~~l~~rl-~lp~vlgyilaGillGP~~lg~i~~~~~i~~laelGvv~LlF~iGLEl~~~~l~~~ 83 (621)
T PRK03562 5 HTLIQALIYLGAAVLIVPIAVRL-GLGSVLGYLIAGCIIGPWGLRLVTDVESILHFAEFGVVLMLFVIGLELDPQRLWKL 83 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-CCChHHHHHHHHHHhCcccccCCCCHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 46899999999999999999999 99999999999999999999999888889999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhccHHHHHHHHHHcCCCCChhHHHHHHHHHHHHhhc
Q 004361 681 KKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQVTLR 758 (759)
Q Consensus 681 ~K~iLvLAilgVLLp~~lVG~al~~lLGls~~~ALLLGaILSaTSpaVVv~VLkELGLLnSe~GRlaLSalVLqDIls 758 (759)
++.++.+|++++++|++ +++++.+++|++|..++++|++++.||+++++++|+|+|+++|++||.+++++++||+++
T Consensus 84 ~~~~~~~g~~qv~~~~~-~~~~~~~~~g~~~~~al~ig~~la~SStaiv~~~L~e~~~l~t~~G~~~l~~ll~~Dl~~ 160 (621)
T PRK03562 84 RRSIFGGGALQMVACGG-LLGLFCMLLGLRWQVALLIGLGLALSSTAIAMQAMNERNLMVTQMGRSAFAILLFQDIAA 160 (621)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHHHHHHHHHHHHH
Confidence 99999999999999865 455566778999999999999999999999999999999999999999999999999863
No 2
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=99.90 E-value=1.8e-23 Score=244.41 Aligned_cols=185 Identities=17% Similarity=0.290 Sum_probs=152.0
Q ss_pred ccchhhHHHHhcchHhhhhhhccCC-ccccch-hHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhcccccc
Q 004361 568 SNAKPLIREVKKLPKRIKKLLDMLP-EQEINE-EEASLFDVLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLS 645 (759)
Q Consensus 568 s~~~plV~~c~~~~~~~~~li~~lp-~~~~~~-~~~lLlqL~LILlaA~LLg~LlrRL~gLP~VVGyILAGIILGPsgLG 645 (759)
.+..|++ |...+...+ .+.|. .+|+.. ...++++++++++++.+++++++|+ ++|.++|||++||+|||+++|
T Consensus 12 ~~~~~~~--c~~~~~~~s--~g~~~g~~pl~~~l~~~llql~lil~~a~l~~~ll~rl-~~P~ivgeIlaGIlLGPs~lg 86 (832)
T PLN03159 12 STASSVV--CYAPMMITT--NGIWQGDNPLDFSLPLFILQLTLVVVTTRLLVFILKPF-RQPRVISEILGGVILGPSVLG 86 (832)
T ss_pred CCCCCcc--cccCCCccC--CcccccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhc-CCChhHHHHHHHHhcCHhhhC
Confidence 3444554 874322222 34443 555532 3378899999999999999999999 999999999999999999999
Q ss_pred cccc----------hhhHHHHHHHHHHHHHHHHhhcCChhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCC-----
Q 004361 646 IIRH----------VHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHFVSGLP----- 710 (759)
Q Consensus 646 lI~~----------~eiLe~LAEIGLIfLLFlaGLELDl~~LKr~~K~iLvLAilgVLLp~~lVG~al~~lLGls----- 710 (759)
+++. ...+++++++|++|+||++|+|+|++.+|+.+++++.++++++++|++ +|+++.++++..
T Consensus 87 ~i~~~~~~~fp~~~~~~l~~la~lGlillmFliGLE~Dl~~lr~~~k~a~~ia~~~~ilpf~-lg~~~~~~l~~~~~~~~ 165 (832)
T PLN03159 87 QSEVFANTIFPLRSVMVLETMANLGLLYFLFLVGVEMDISVIRRTGKKALAIAIAGMALPFC-IGLAFSFIFHQVSRNVH 165 (832)
T ss_pred cChhhhhhcCCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhcchHHHHHHHHHHHHHHH-HHHHHHHHHhhcccccc
Confidence 8742 246899999999999999999999999999999999999999999964 566555544321
Q ss_pred -hHHHHHHHHHHhhccHHHHHHHHHHcCCCCChhHHHHHHHHHHHHhhc
Q 004361 711 -GPASIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQVTLR 758 (759)
Q Consensus 711 -~~~ALLLGaILSaTSpaVVv~VLkELGLLnSe~GRlaLSalVLqDIls 758 (759)
+..++++|+++++||++|++++|+|+|+++|++||+++++++++|+++
T Consensus 166 ~~~~~l~~g~alS~Ts~pVv~riL~Elkll~s~~GrlaLsaavv~Dl~~ 214 (832)
T PLN03159 166 QGTFILFLGVALSVTAFPVLARILAEIKLINTELGRIAMSAALVNDMCA 214 (832)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHcCcccCcHHHHHHHHHHHHHHHH
Confidence 345688999999999999999999999999999999999999999864
No 3
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=99.90 E-value=6e-23 Score=232.27 Aligned_cols=155 Identities=44% Similarity=0.687 Sum_probs=144.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHhhcCChhHHhhh
Q 004361 601 ASLFDVLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSM 680 (759)
Q Consensus 601 ~lLlqL~LILlaA~LLg~LlrRL~gLP~VVGyILAGIILGPsgLGlI~~~eiLe~LAEIGLIfLLFlaGLELDl~~LKr~ 680 (759)
.++.+++++++++.+..++++|+ ++|+++|||++|+++||+++|++++.+.+..++++|++++||.+|+|+|++.+|+.
T Consensus 5 ~~~~~~~~~l~~a~~~~~l~~rl-~~p~ilg~ilaGillGP~~lg~i~~~~~i~~laelGvv~LLF~iGLel~~~~l~~~ 83 (601)
T PRK03659 5 DLLTAGVLFLFAAVVAVPLAQRL-GIGAVLGYLLAGIAIGPWGLGFISDVDEILHFSELGVVFLMFIIGLELNPSKLWQL 83 (601)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHh-CCChHHHHHHHHHHhccccccCCCcHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 56788888999999999999999 99999999999999999999999888889999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhccHHHHHHHHHHcCCCCChhHHHHHHHHHHHHhh
Q 004361 681 KKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQVTL 757 (759)
Q Consensus 681 ~K~iLvLAilgVLLp~~lVG~al~~lLGls~~~ALLLGaILSaTSpaVVv~VLkELGLLnSe~GRlaLSalVLqDIl 757 (759)
++.++.+|..++++|+++++. +.+++|++|..++++|++++.||+++++++|+|+|+++|++||++++++++||+.
T Consensus 84 ~~~~~~~g~~~v~~t~~~~~~-~~~~~g~~~~~a~~~g~~la~SSTaiv~~iL~e~~~~~t~~G~~~l~vll~~Di~ 159 (601)
T PRK03659 84 RRSIFGVGAAQVLLSAAVLAG-LLMLTDFSWQAAVVGGIGLAMSSTAMALQLMREKGMNRSESGQLGFSVLLFQDLA 159 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCchHHHHHHHHHHHHHH
Confidence 999999999999999765544 4456799999999999999999999999999999999999999999999999985
No 4
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=99.90 E-value=9.6e-23 Score=207.31 Aligned_cols=147 Identities=50% Similarity=0.781 Sum_probs=139.0
Q ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHhhcCChhHHhhhhhhHHHHHHH
Q 004361 611 LASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSA 690 (759)
Q Consensus 611 laA~LLg~LlrRL~gLP~VVGyILAGIILGPsgLGlI~~~eiLe~LAEIGLIfLLFlaGLELDl~~LKr~~K~iLvLAil 690 (759)
+++.+++.+++|+ ++|++++||++|+++||+++|++++.+.++.++++|++++||.+|+|+|++.+|+++++.+.+++.
T Consensus 2 ~~a~~~~~l~~~l-~lP~~v~~il~GillGp~~lg~i~~~~~~~~l~~igl~~llF~~Gl~~d~~~l~~~~~~~~~~~~~ 80 (273)
T TIGR00932 2 LAAVLAVPLSRRL-GIPSVLGYLLAGVLIGPSGLGLISNVEGVNHLAEFGVILLMFLIGLELDLERLWKLRKAAFGVGVL 80 (273)
T ss_pred cHHHHHHHHHHHh-CCCHHHHHHHHHHHhCcccccCCCChHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 5677789999999 999999999999999999999988888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhccHHHHHHHHHHcCCCCChhHHHHHHHHHHHHhhc
Q 004361 691 QVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQVTLR 758 (759)
Q Consensus 691 gVLLp~~lVG~al~~lLGls~~~ALLLGaILSaTSpaVVv~VLkELGLLnSe~GRlaLSalVLqDIls 758 (759)
++++|++++++.+++++|+++..++++|+++++||+++++++++|+++++++.|++++++++++|+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~ls~Ts~~v~~~il~~~~~~~~~~g~l~l~~~~~~D~~~ 148 (273)
T TIGR00932 81 QVLVPGVLLGLLLGHLLGLALGAAVVIGIILALSSTAVVVQVLKERGLLKTPFGQTVLGILLFQDIAV 148 (273)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCcccChHHHHHHHHHHHHHHHH
Confidence 99999667788778889999999999999999999999999999999999999999999999999974
No 5
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=99.90 E-value=1e-22 Score=227.48 Aligned_cols=156 Identities=28% Similarity=0.439 Sum_probs=143.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHhhcCChhHHhhh
Q 004361 601 ASLFDVLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSM 680 (759)
Q Consensus 601 ~lLlqL~LILlaA~LLg~LlrRL~gLP~VVGyILAGIILGPsgLGlI~~~eiLe~LAEIGLIfLLFlaGLELDl~~LKr~ 680 (759)
.++..++++++++.+++.+++|+ ++|+++|||++|+++||+++|++++.+.++.++++|++|+||.+|+|+|++.+++.
T Consensus 6 ~~~~~~~~~l~~a~~~~~l~~rl-~~P~ivg~IlaGillGp~~lg~~~~~~~~~~la~lGli~llF~~Gle~d~~~l~~~ 84 (558)
T PRK10669 6 PLITTIVGGLVLAFILGMLANRL-RISPLVGYLLAGVLAGPFTPGFVADTKLAPELAELGVILLMFGVGLHFSLKDLMAV 84 (558)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHhhCccccccccchHHHHHHHHHHHHHHHHHhHhcCCHHHHHHH
Confidence 55677888999999999999999 99999999999999999999998888889999999999999999999999999998
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhccHHHHHHHHHHcCCCCChhHHHHHHHHHHHHhhc
Q 004361 681 KKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQVTLR 758 (759)
Q Consensus 681 ~K~iLvLAilgVLLp~~lVG~al~~lLGls~~~ALLLGaILSaTSpaVVv~VLkELGLLnSe~GRlaLSalVLqDIls 758 (759)
++..+..++.++++++ ++++++++++|+++..++++|++++.||+++++++|+|+|++++++||+++++++++|+++
T Consensus 85 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~al~lg~~ls~tS~~vv~~~L~e~~~l~s~~G~~~l~~~~~~Dl~~ 161 (558)
T PRK10669 85 KSIAIPGAIAQIAVAT-LLGMALSAVLGWSLMTGIVFGLCLSTASTVVLLRALEERQLIDSQRGQIAIGWLIVEDLVM 161 (558)
T ss_pred hhHHHHHHHHHHHHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcchHHHHHHHHHHHHHH
Confidence 8777777777877775 4677777888999999999999999999999999999999999999999999999999853
No 6
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=99.88 E-value=5.1e-22 Score=215.16 Aligned_cols=158 Identities=40% Similarity=0.667 Sum_probs=138.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhcccccccc-cchhhHHHHHHHHHHHHHHHHhhcCChhHH
Q 004361 599 EEASLFDVLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSII-RHVHGTKAIAEFGVVFLLFNIGLELSVERL 677 (759)
Q Consensus 599 ~~~lLlqL~LILlaA~LLg~LlrRL~gLP~VVGyILAGIILGPsgLGlI-~~~eiLe~LAEIGLIfLLFlaGLELDl~~L 677 (759)
....+.++.++++++.+++++++|+ ++|+++||+++|+++||.+++.+ .+.+.+++++++|++|+||.+|+|+|++.+
T Consensus 4 ~~~~l~~~~iiL~~a~i~~~l~~rl-~lp~vlg~llaGiilGp~~~~~~~~~~~~i~~laelGvi~LlF~~GLE~~~~~l 82 (397)
T COG0475 4 LSLILLQLLILLLVAVILGPLFKRL-GLPPVLGYLLAGIILGPWGLLLIIESSEIIELLAELGVVFLLFLIGLEFDLERL 82 (397)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHhcCcccccccCCchHHHHHHHHHhHHHHHHHHHHCcCHHHH
Confidence 3356889999999999999999999 99999999999999999665544 466889999999999999999999999999
Q ss_pred hhhhhh-HHHHHHHHHHHHHHHHHHHHHH-HhCCChHHHHHHHHHHhhccHHHHHHHHHHcCCCCChhHHHHHHHHHHHH
Q 004361 678 SSMKKY-VFGLGSAQVLVTAVVVGLVAHF-VSGLPGPASIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQV 755 (759)
Q Consensus 678 Kr~~K~-iLvLAilgVLLp~~lVG~al~~-lLGls~~~ALLLGaILSaTSpaVVv~VLkELGLLnSe~GRlaLSalVLqD 755 (759)
|++++. .+..+..++.+|++ ++....+ ++|++|..++++|.+++.||+++++++|+|+|.++++.|+++++++++||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~g~~~~~al~lg~~l~~sS~~i~~~iL~e~~~~~~~~g~~~l~~~i~~D 161 (397)
T COG0475 83 KKVGRSVGLGVAQVGLTAPFL-LGLLLLLGILGLSLIAALFLGAALALSSTAIVLKILMELGLLKTREGQLILGALVFDD 161 (397)
T ss_pred HHhchhhhhhHHHHHHHHHHH-HHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 999998 66666666666643 4433333 47999999999999999999999999999999999999999999999999
Q ss_pred hhc
Q 004361 756 TLR 758 (759)
Q Consensus 756 Ils 758 (759)
+..
T Consensus 162 i~~ 164 (397)
T COG0475 162 IAA 164 (397)
T ss_pred HHH
Confidence 964
No 7
>PRK05326 potassium/proton antiporter; Reviewed
Probab=99.83 E-value=5.2e-20 Score=206.36 Aligned_cols=158 Identities=23% Similarity=0.288 Sum_probs=147.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhcccccccc--cchhhHHHHHHHHHHHHHHHHhhcCChhHH
Q 004361 600 EASLFDVLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSII--RHVHGTKAIAEFGVVFLLFNIGLELSVERL 677 (759)
Q Consensus 600 ~~lLlqL~LILlaA~LLg~LlrRL~gLP~VVGyILAGIILGPsgLGlI--~~~eiLe~LAEIGLIfLLFlaGLELDl~~L 677 (759)
+.+++.++++++++.+++.+++|+ ++|.+++|+++|+++||.++|.+ ++.+..+.++++|++++||.+|+++|++.+
T Consensus 5 ~~~ll~~~~ll~l~~~~~~l~~r~-~~P~ll~~il~GillGp~~lg~i~~~~~~~~~~i~~l~L~~iLF~~Gl~~~~~~l 83 (562)
T PRK05326 5 NSLLLIGALLLLLSILASRLSSRL-GIPSLLLFLAIGMLAGEDGLGGIQFDNYPLAYLVGNLALAVILFDGGLRTRWSSF 83 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHhCccccCCcccCcHHHHHHHHHHHHHHHHHcCccCCCHHHH
Confidence 356788899999999999999999 99999999999999999999965 345678999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhccHHHHHHHHHHcCC-CCChhHHHHHHHHHHHHh
Q 004361 678 SSMKKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSSTAVVLQVLQERGE-STSRHGRATFSVLLFQVT 756 (759)
Q Consensus 678 Kr~~K~iLvLAilgVLLp~~lVG~al~~lLGls~~~ALLLGaILSaTSpaVVv~VLkELGL-LnSe~GRlaLSalVLqDI 756 (759)
|+.+++++.++++++++|++++|++++|++|++|..++++|+++++||++++.++|++.|+ +++++|+++.+.+.++|.
T Consensus 84 ~~~~~~~~~la~~gv~~t~~~~g~~~~~l~g~~~~~alllgai~s~Td~a~v~~iL~~~~l~l~~~v~~~l~~eS~~nD~ 163 (562)
T PRK05326 84 RPALGPALSLATLGVLITAGLTGLFAHWLLGLDWLEGLLLGAIVGSTDAAAVFSLLRGKGLNLKERVASTLEIESGSNDP 163 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhhccCchHHHHHHHhccCCCcchhHHhHhhhhhhcccH
Confidence 9999999999999999998877888888899999999999999999999999999999996 799999999999999997
Q ss_pred hc
Q 004361 757 LR 758 (759)
Q Consensus 757 ls 758 (759)
++
T Consensus 164 ~a 165 (562)
T PRK05326 164 MA 165 (562)
T ss_pred HH
Confidence 64
No 8
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=99.75 E-value=1.7e-18 Score=182.17 Aligned_cols=156 Identities=26% Similarity=0.430 Sum_probs=138.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHhhcCChhHHhhh
Q 004361 601 ASLFDVLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSM 680 (759)
Q Consensus 601 ~lLlqL~LILlaA~LLg~LlrRL~gLP~VVGyILAGIILGPsgLGlI~~~eiLe~LAEIGLIfLLFlaGLELDl~~LKr~ 680 (759)
..+..+..-+.++++++.+..|+ ++||.+||+++|+++||+..|++.+......++++|++++||.+|++++++.+...
T Consensus 6 pli~tiv~gl~lAFl~G~lA~rl-rlsPLVGyL~AGv~~gpftpGFvad~~La~~LAelGViLLmFgvGLhfslkdLLav 84 (408)
T COG4651 6 PLITTIVGGLVLAFLLGALANRL-RLSPLVGYLLAGVLAGPFTPGFVADQTLAPELAELGVILLMFGVGLHFSLKDLLAV 84 (408)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhc-CCCchHHHHHHHHhcCCCCCCcccchhHHHHHHHhhHHHHHHhcchheeHHHHhhH
Confidence 44566667788899999999999 99999999999999999999999888888899999999999999999999999876
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhccHHHHHHHHHHcCCCCChhHHHHHHHHHHHHhhc
Q 004361 681 KKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQVTLR 758 (759)
Q Consensus 681 ~K~iLvLAilgVLLp~~lVG~al~~lLGls~~~ALLLGaILSaTSpaVVv~VLkELGLLnSe~GRlaLSalVLqDIls 758 (759)
+...+.-++.++.+.. ..|+.+.+++||++...+++|.++|..|+.+..+.|+|+++++|..||++++.++++|+++
T Consensus 85 k~iAipgAl~qia~at-~lg~gL~~~lgws~~~glvfGlaLS~aSTVvllraLqEr~lidt~rG~iAiGwLiveDl~m 161 (408)
T COG4651 85 KAIAIPGALAQIALAT-LLGMGLSSLLGWSFGTGIVFGLALSVASTVVLLRALEERQLIDTQRGRIAIGWLIVEDLAM 161 (408)
T ss_pred HHHhcchHHHHHHHHH-HHHhHHHHHcCCCcccceeeeehhhhHHHHHHHHHHHHhccccccCceEEEeehhHHHHHH
Confidence 6555555555555443 4677778889999999999999999999999999999999999999999999999999975
No 9
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=99.71 E-value=5e-19 Score=186.17 Aligned_cols=150 Identities=31% Similarity=0.548 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhcccccccccch-hhHHHHHHHHHHHHHHHHhhcCChhHHhhhhhhHHH
Q 004361 608 WLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHV-HGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFG 686 (759)
Q Consensus 608 LILlaA~LLg~LlrRL~gLP~VVGyILAGIILGPsgLGlI~~~-eiLe~LAEIGLIfLLFlaGLELDl~~LKr~~K~iLv 686 (759)
++++.+.+.+.+++|+ ++|++++|+++|+++||.+++++++. ..++.++++|++++||.+|+|+|++.+|++++..+.
T Consensus 3 lli~~~~~~~~l~~r~-~iP~~i~~i~~Gi~lg~~~~~~~~~~~~~~~~l~~i~l~~llF~~G~~~d~~~l~~~~~~~~~ 81 (380)
T PF00999_consen 3 LLILLAFVAGILFRRL-GIPSIIGYILVGIVLGPSGLGLLEPDNPSFELLAEIGLAFLLFEAGLELDIKELRRNWRRALA 81 (380)
T ss_dssp ----------------------------------------------S-SSHHHHS--SSHHHHTTGGGG-----------
T ss_pred EEeehHHHHHHHHHHh-CCCHHHHHHHheeehhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHhhcccccccccccccc
Confidence 3455566677789999 99999999999999999999987776 788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH---HhCCChHHHHHHHHHHhhccHHHHHHHHHHcCCCCChhHHHHHHHHHHHHhhc
Q 004361 687 LGSAQVLVTAVVVGLVAHF---VSGLPGPASIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQVTLR 758 (759)
Q Consensus 687 LAilgVLLp~~lVG~al~~---lLGls~~~ALLLGaILSaTSpaVVv~VLkELGLLnSe~GRlaLSalVLqDIls 758 (759)
+++.+++++++++++..++ ..|+++..++++|+++++|||+++.++++|.+.++++.++++++.++++|+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~l~~~~~~ts~~~v~~~l~~~~~~~~~~~~~~~~~~~i~d~~~ 156 (380)
T PF00999_consen 82 LGLVGFLLPFILVGFLLSFFLFILGLSWAEALLLGAILSATSPAIVSPVLKELGLLPSRLGRLLLSESVINDIIA 156 (380)
T ss_dssp --------------------------------TTHHHHTT--HHHHHHHH-HHHT-SSTTHHHHTTTTTTTTTTT
T ss_pred cccceeeehhhHHHHHHHHhhccchhhhHHHhhhHHhhhcccccchhhhhhhhhcccccccchhhhhchhhccch
Confidence 9999999997665777764 47899999999999999999999999999999999999999999999999875
No 10
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=99.66 E-value=1e-16 Score=186.83 Aligned_cols=159 Identities=21% Similarity=0.301 Sum_probs=137.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhccccccccc----------chhhHHHHHHHHHHHHHHH
Q 004361 598 EEEASLFDVLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIR----------HVHGTKAIAEFGVVFLLFN 667 (759)
Q Consensus 598 ~~~~lLlqL~LILlaA~LLg~LlrRL~gLP~VVGyILAGIILGPsgLGlI~----------~~eiLe~LAEIGLIfLLFl 667 (759)
+...+++|+.++++++.+++.+++++ ++|.++.+|++||++||+.+|.++ ....++.++.+|+++++|+
T Consensus 20 ~lpl~~lq~~~i~~~~~~~~~~l~pl-~qp~~~s~il~Gi~lgps~~g~~~~~~~~~f~~~s~~~l~~~~~lg~~~f~Fl 98 (769)
T KOG1650|consen 20 ALPLLLLQIILIIVLSRLLHILLKPL-GQPRVISEILAGIILGPSLLGRIPSYMNTIFPKSSMIVLELLANLGFLFFLFL 98 (769)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhh-ccchhHHHHHHHHhcchHhhccChhhhhcccccchHHHHHHHHHHHHHHHHHH
Confidence 44578999999999999999999999 999999999999999999998763 2357899999999999999
Q ss_pred HhhcCChhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh------CC-----ChHHHHHHHHHHhhccHHHHHHHHHHc
Q 004361 668 IGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHFVS------GL-----PGPASIVIGNGLALSSTAVVLQVLQER 736 (759)
Q Consensus 668 aGLELDl~~LKr~~K~iLvLAilgVLLp~~lVG~al~~lL------Gl-----s~~~ALLLGaILSaTSpaVVv~VLkEL 736 (759)
.|+++|.+.+++.+++.+.+|+.++++|+. +|+.+.+.+ .. ......+++.+.+.|++++++++|.|+
T Consensus 99 ~gl~~d~~~i~~~~kka~~I~~~~~~~p~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~tsfpv~~~iL~eL 177 (769)
T KOG1650|consen 99 MGLEIDLRVIRRTGKKAIVIAIASVVLPFG-LGFGLAFLLSDTKADKEDGALFLPFEILFILSAQSITSFPVLARILAEL 177 (769)
T ss_pred HHHhhhHHHhhccCceeEEEEEEEeehhhH-hhhhhhhhccccccccccccccccHHHHHHHHHhhcchhHHHHHHHHHh
Confidence 999999999999999998899999999964 454443332 11 122567888999999999999999999
Q ss_pred CCCCChhHHHHHHHHHHHHhhc
Q 004361 737 GESTSRHGRATFSVLLFQVTLR 758 (759)
Q Consensus 737 GLLnSe~GRlaLSalVLqDIls 758 (759)
+++++++||+++++++++|+++
T Consensus 178 kll~se~Grla~saa~v~dv~~ 199 (769)
T KOG1650|consen 178 KLLNSELGRLALSAAVVNDVAG 199 (769)
T ss_pred hchhchhhhhhhhhhhhhhHHH
Confidence 9999999999999999999874
No 11
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=99.64 E-value=3.4e-15 Score=167.39 Aligned_cols=148 Identities=18% Similarity=0.208 Sum_probs=127.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhccccccc-ccchhhHHHHHHHHHHHHHHHHhhcCChhHHhhhhhhHH
Q 004361 607 LWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSI-IRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVF 685 (759)
Q Consensus 607 ~LILlaA~LLg~LlrRL~gLP~VVGyILAGIILGPsgLGl-I~~~eiLe~LAEIGLIfLLFlaGLELDl~~LKr~~K~iL 685 (759)
..+++++.....+++|+ ++|.+++++++|+++||..++. ++... +.+..+++.++||.+|+++|++.++++++.++
T Consensus 4 ~~l~~~~~~~~~l~~r~-~lP~~v~lil~Gi~lg~~~~~~~~~~~~--~~~~~~~Lp~lLF~~g~~~~~~~l~~~~~~i~ 80 (525)
T TIGR00831 4 IELVMLATAVAVTVKFI-RLPYPIALILAGLLLGLAGLLPEVPLDR--EIVLFLFLPPLLFEAAMNTDLRELRENFRPIA 80 (525)
T ss_pred HHHHHHHHHHHHHhccc-CCCHHHHHHHHHHHHHhccccCCCCCCH--HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 34555666677889999 9999999999999999864432 22111 23445899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhccHHHHHHHHHHcCCCCChhHHHHHHHHHHHHhhc
Q 004361 686 GLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQVTLR 758 (759)
Q Consensus 686 vLAilgVLLp~~lVG~al~~lLGls~~~ALLLGaILSaTSpaVVv~VLkELGLLnSe~GRlaLSalVLqDIls 758 (759)
.+++.++++|++++|+++++++|++|..++++|+++++|||+++.+++++.++ +++...++.+.+++||.++
T Consensus 81 ~la~~~vlit~~~v~~~~~~~~~l~~~~alllGails~TDpvav~~il~~~~~-p~rl~~il~gESllND~~a 152 (525)
T TIGR00831 81 LIAFLLVVVTTVVVGFSLNWILGIPLALALILGAVLSPTDAVAVLGTFKSIRA-PKKLSILLEGESLLNDGAA 152 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCCHHHHHHHHhcCCC-CHHHHHHHhhhhhhcchHH
Confidence 99999999998888888888889999999999999999999999999999875 7889999999999999764
No 12
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=99.52 E-value=2.7e-13 Score=157.94 Aligned_cols=154 Identities=14% Similarity=0.091 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-hcCCCchHHHHHHHHHhhcccccccccchh------hHHHHHHHHHHHHHHHHhhcCC
Q 004361 601 ASLFDVLWLLLASVIFVPIFQ-KIPGGSPVLGYLAAGILIGPYGLSIIRHVH------GTKAIAEFGVVFLLFNIGLELS 673 (759)
Q Consensus 601 ~lLlqL~LILlaA~LLg~Llr-RL~gLP~VVGyILAGIILGPsgLGlI~~~e------iLe~LAEIGLIfLLFlaGLELD 673 (759)
.+++-++.++++..++..+++ |+ .+|..+.++++|+++||.+++++++.. .+..+++++++++||.+|++++
T Consensus 13 l~~~~lG~~lll~~l~s~~lkeRl-~Ls~~~v~Ll~GiilGP~~l~~idP~~~g~~d~i~leIteIvL~I~LFa~Gl~L~ 91 (810)
T TIGR00844 13 VAYSCVGIFSSIFSLVSLFVKEKL-YIGESMVASIFGLIVGPHCLNWFNPLSWGNTDSITLEISRILLCLQVFAVSVELP 91 (810)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhc-CCcHHHHHHHHHHHhhhhhhccCChhhcccchHHHHHHHHHHHHHHHHHHHHhCC
Confidence 455666655555555555555 88 899999999999999999998776432 2334899999999999999999
Q ss_pred hhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH-hCCChHHHHHHHHHHhhccHHHHHHHHHH---cCCCCChhHHHHHH
Q 004361 674 VERLSSMKKYVFGLGSAQVLVTAVVVGLVAHFV-SGLPGPASIVIGNGLALSSTAVVLQVLQE---RGESTSRHGRATFS 749 (759)
Q Consensus 674 l~~LKr~~K~iLvLAilgVLLp~~lVG~al~~l-LGls~~~ALLLGaILSaTSpaVVv~VLkE---LGLLnSe~GRlaLS 749 (759)
++.+++.|+.++.+.++++++++++++++++++ +|++|..++++|+++++|+|+.+..+++. .+ +..++..++-+
T Consensus 92 ~~~Lrr~wrsV~rLl~~~M~lT~livAL~a~~Li~GL~~~~ALLLGAILAPTDPVLAssV~kg~~~~r-vP~rLR~lL~~ 170 (810)
T TIGR00844 92 RKYMLKHWVSVTMLLVPVMTSGWLVIALFVWILVPGLNFPASLLMGACITATDPVLAQSVVSGTFAQK-VPGHLRNLLSC 170 (810)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcCCcHHHHHHHHhcccccc-CChHHHhHHhh
Confidence 999999999999999999999998888888877 59999999999999999999999998872 22 34555555555
Q ss_pred HHHHHHh
Q 004361 750 VLLFQVT 756 (759)
Q Consensus 750 alVLqDI 756 (759)
-+.++|-
T Consensus 171 ESGlNDG 177 (810)
T TIGR00844 171 ESGCNDG 177 (810)
T ss_pred hhhcccH
Confidence 5555553
No 13
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=99.40 E-value=5.8e-12 Score=138.71 Aligned_cols=156 Identities=24% Similarity=0.324 Sum_probs=138.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhcccccccccc--hhhHHHHHHHHHHHHHHHHhhcCChhHH
Q 004361 600 EASLFDVLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRH--VHGTKAIAEFGVVFLLFNIGLELSVERL 677 (759)
Q Consensus 600 ~~lLlqL~LILlaA~LLg~LlrRL~gLP~VVGyILAGIILGPsgLGlI~~--~eiLe~LAEIGLIfLLFlaGLELDl~~L 677 (759)
...++.+.++++++.+...+.+|+ ..|.++.+++.|++.||.+++.+.. ...-+.+..+++.+++|..|+++|.+.+
T Consensus 5 ~~~~~~~~lil~l~~~~~~~~~~l-~~~~i~~~ll~g~i~g~~~l~~~~~~~~~~~el~~~l~l~ilLf~~g~~l~~~~l 83 (429)
T COG0025 5 LMLLFLLLLILLLGLLVSVLAGRL-LLPEIPLLLLLGLLGGPPGLNLISPDLELDPELFLVLFLAILLFAGGLELDLREL 83 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-hhhhhHHHHHHHHHHhhhhhccccccccCChHHHHHHHHHHHHHHhHhcCCHHHH
Confidence 356778888888999999999999 8899999999999999998887654 2223455599999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHh-CCChHHHHHHHHHHhhccHHHHHHHHHHcCCCCChhHHHHHHHHHHHHh
Q 004361 678 SSMKKYVFGLGSAQVLVTAVVVGLVAHFVS-GLPGPASIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQVT 756 (759)
Q Consensus 678 Kr~~K~iLvLAilgVLLp~~lVG~al~~lL-Gls~~~ALLLGaILSaTSpaVVv~VLkELGLLnSe~GRlaLSalVLqDI 756 (759)
+++++.++.+++.+++++++++|+++|+++ ++++..++++|+++++|+|+++.++++..+ ...+...++.+=++++|-
T Consensus 84 ~~~~~~I~~La~~~v~it~~~~g~~~~~l~~~i~~~~a~l~gAilspTDPv~v~~i~~~~~-vp~ri~~iL~gESl~ND~ 162 (429)
T COG0025 84 RRVWRSILVLALPLVLITALGIGLLAHWLLPGIPLAAAFLLGAILSPTDPVAVSPIFKRVR-VPKRIRTILEGESLLNDG 162 (429)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHhHHhcCCCchhhHHHHhcCC-CCHHHHHHHHHHHHhhhH
Confidence 999999999999999999998999988876 788899999999999999999999999977 588899999999999996
Q ss_pred h
Q 004361 757 L 757 (759)
Q Consensus 757 l 757 (759)
.
T Consensus 163 ~ 163 (429)
T COG0025 163 V 163 (429)
T ss_pred H
Confidence 4
No 14
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=99.23 E-value=1.4e-10 Score=131.89 Aligned_cols=144 Identities=13% Similarity=0.125 Sum_probs=116.4
Q ss_pred HHHHHHHHhc-CCCchHHHHHHHHHhhccccccc--ccchh-hHHHHHHHHHHHHHHHHhhcCChhHHhhhhhhHHHHHH
Q 004361 614 VIFVPIFQKI-PGGSPVLGYLAAGILIGPYGLSI--IRHVH-GTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGS 689 (759)
Q Consensus 614 ~LLg~LlrRL-~gLP~VVGyILAGIILGPsgLGl--I~~~e-iLe~LAEIGLIfLLFlaGLELDl~~LKr~~K~iLvLAi 689 (759)
.+...+.+|+ .++|..+..|++|+++|+...+. ++... .-+.+-.+.+..++|.+|++++.+.++++++.++.+++
T Consensus 22 ~~~~~~~~~~~~~lP~s~llil~GlllG~i~~~~~~~~~~~l~~~lf~~~~LPpIlFe~g~~l~~~~f~~n~~~Il~lAv 101 (559)
T TIGR00840 22 KIGFHLTHKVIRAVPESVLLIVYGLLVGGIIKASPHIDPPTLDSSYFFLYLLPPIVLDAGYFMPQRNFFENLGSILIFAV 101 (559)
T ss_pred HHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHcCCCCccCCcCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 3333444444 45899999999999999863222 21111 12455567899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHh--------CCChHHHHHHHHHHhhccHHHHHHHHHHcCCCCChhHHHHHHHHHHHHhhc
Q 004361 690 AQVLVTAVVVGLVAHFVS--------GLPGPASIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQVTLR 758 (759)
Q Consensus 690 lgVLLp~~lVG~al~~lL--------Gls~~~ALLLGaILSaTSpaVVv~VLkELGLLnSe~GRlaLSalVLqDIls 758 (759)
++++++++++|+++++++ +++|..++++|+++++|+|+.+.+++++.+. +.++-.++.+-++++|.++
T Consensus 102 ~Gvlit~~~ig~~l~~~~~~~~~~~~~l~~~~allfGAiiSaTDPVAVlai~~~~~v-~~~L~~ll~gESllNDava 177 (559)
T TIGR00840 102 VGTLINAFVIGLSLYGICLIGGFGSIDIGLLDNLLFGSLISAVDPVAVLAVFEEYHV-NEKLYIIIFGESLLNDAVT 177 (559)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccCCCHHHHHHHhHHhcCCchHHHHHHHHhcCC-CcchhhheehhhhhhccHH
Confidence 999999988888877542 4589999999999999999999999999984 7888999999999999764
No 15
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=99.18 E-value=2.7e-10 Score=125.61 Aligned_cols=136 Identities=21% Similarity=0.307 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhccccccccc--chhhHHHHHHHHHHHHHHHHhhcCChhHHhhhhhhH
Q 004361 607 LWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIR--HVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYV 684 (759)
Q Consensus 607 ~LILlaA~LLg~LlrRL~gLP~VVGyILAGIILGPsgLGlI~--~~eiLe~LAEIGLIfLLFlaGLELDl~~LKr~~K~i 684 (759)
.++++++.+.+.+..|+ +.|.++-++..|++.|.-++|.|+ +.+.-..++.+++++++|..|+..+++.+|...+++
T Consensus 13 svlvivsif~s~~ssrf-GvP~LllFl~iGm~aG~dGlg~I~fdNy~~Ay~vg~lALaiILfdgG~~T~lss~r~a~~pa 91 (574)
T COG3263 13 SVLVIVSIFSSLISSRF-GVPLLLLFLSIGMLAGVDGLGGIEFDNYPFAYMVGNLALAIILFDGGFGTQLSSFRVAAGPA 91 (574)
T ss_pred HHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHcCCCcccccccCccHHHHHHHHHHHHHHhhcCccCCcHHHHHHHhhhh
Confidence 36777888899999999 999999999999999999998664 456778999999999999999999999999988899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhccHHHHHHHHHHcCCCCChhH
Q 004361 685 FGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSSTAVVLQVLQERGESTSRHG 744 (759)
Q Consensus 685 LvLAilgVLLp~~lVG~al~~lLGls~~~ALLLGaILSaTSpaVVv~VLkELGLLnSe~G 744 (759)
+.++++++++|..++|.+++|+++++|..++++|+++..|+.+.|..+|.+.++ +.+++
T Consensus 92 lsLATlGVl~Ts~Ltg~aA~~ll~l~wle~~LiGAiVgSTDAAAVF~lL~~~nl-~erv~ 150 (574)
T COG3263 92 LSLATLGVLITSGLTGVAAAYLLNLDWLEGLLIGAIVGSTDAAAVFSLLGGKNL-NERVA 150 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHhhccccHHHHHHHHccCCh-hhhhh
Confidence 999999999999999999999999999999999999999999999999988775 44444
No 16
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=98.51 E-value=2.1e-07 Score=105.88 Aligned_cols=156 Identities=13% Similarity=0.157 Sum_probs=120.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC---CchHHHHHHHHHhhcccccccccc-hh------hH--HHHHHHHHHHHHHHH
Q 004361 601 ASLFDVLWLLLASVIFVPIFQKIPG---GSPVLGYLAAGILIGPYGLSIIRH-VH------GT--KAIAEFGVVFLLFNI 668 (759)
Q Consensus 601 ~lLlqL~LILlaA~LLg~LlrRL~g---LP~VVGyILAGIILGPsgLGlI~~-~e------iL--e~LAEIGLIfLLFla 668 (759)
..++-++.+++++.+.++++++- | +|.-+.-++.|+++|-......+. .. .+ +.+-.+-+..+.|..
T Consensus 35 ~al~~~i~lL~l~iv~~hll~~~-R~~~l~Esv~~l~iGl~vG~vi~~~~~~~s~~~~~~~~f~~~~ff~vLLPpiif~s 113 (575)
T KOG1965|consen 35 VALLFFILLLVLCIVLGHLLEET-RFRWLPESVAALFIGLLVGLVIRYSSGGKSSRGKRILVFSPDLFFLVLLPPIIFNS 113 (575)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHHhhhcCCCcccccceeEEecccHHHHHhhchhhhcc
Confidence 44566667778888899999976 6 898888899999998542111110 00 00 244556678899999
Q ss_pred hhcCChhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH------hCCChHHHHHHHHHHhhccHHHHHHHHHHcCCCCCh
Q 004361 669 GLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHFV------SGLPGPASIVIGNGLALSSTAVVLQVLQERGESTSR 742 (759)
Q Consensus 669 GLELDl~~LKr~~K~iLvLAilgVLLp~~lVG~al~~l------LGls~~~ALLLGaILSaTSpaVVv~VLkELGLLnSe 742 (759)
|.+++.+.+.++.-.++..++++++++.+++|.+++++ .+++|..++++|+++|+|+|+.++.++++++. ...
T Consensus 114 gy~l~k~~fF~n~~si~~fa~~Gt~IS~~~ig~gv~~~~~~~~~~~~~f~d~L~fGaliSATDPVtvLaIfnel~v-d~~ 192 (575)
T KOG1965|consen 114 GYSLKKKQFFRNIGSILLFAIFGTFISAVIIGAGVYLLGFGLLIYDLSFKDCLAFGALISATDPVTVLAIFNELGV-DPK 192 (575)
T ss_pred cceechhhhhhhhHHHHHhhhcceeeehhHHhhHHHHHhcccccccccHHHHHHHhhHhcccCchHHHHHHHHhCC-Ccc
Confidence 99999999999998899999999988888888777654 25689999999999999999999999999984 445
Q ss_pred hHHHHHHHHHHHHhhc
Q 004361 743 HGRATFSVLLFQVTLR 758 (759)
Q Consensus 743 ~GRlaLSalVLqDIls 758 (759)
.=-++++=++++|-++
T Consensus 193 Ly~LVFGESvLNDAvs 208 (575)
T KOG1965|consen 193 LYTLVFGESVLNDAVS 208 (575)
T ss_pred eeeeeecchhccchhH
Confidence 5557788888888654
No 17
>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=97.79 E-value=0.00024 Score=77.61 Aligned_cols=114 Identities=14% Similarity=0.124 Sum_probs=88.4
Q ss_pred HHHHHHhhcccccccccch------hhHHHHHHHHHHHHHHHHhhcCChhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 004361 632 YLAAGILIGPYGLSIIRHV------HGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHF 705 (759)
Q Consensus 632 yILAGIILGPsgLGlI~~~------eiLe~LAEIGLIfLLFlaGLELDl~~LKr~~K~iLvLAilgVLLp~~lVG~al~~ 705 (759)
-.+.|+++||+++++..+. ....-++.+-+..-.|.+++|+.-..+.++|+.++++-...+++-+++.+.+.+.
T Consensus 44 a~itGlI~Gphvlnlfdp~~wgn~d~it~ei~RvvLcvqvfava~eLPr~Y~l~~w~Si~vlllpVmi~gwlvs~~fvy~ 123 (467)
T KOG4505|consen 44 AVITGLIFGPHVLNLFDPNSWGNKDYITYEISRVVLCVQVFAVAMELPRAYMLEHWRSIFVLLLPVMIIGWLVSFGFVYA 123 (467)
T ss_pred hhhhheeechhhhhhcCCccccCcchhhhhhhhhhHhHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999887542 3456788899999999999999999999999988877665555555544444443
Q ss_pred Hh-CCChHHHHHHHHHHhhccHHHHHHHHHHcCCCCChhHH
Q 004361 706 VS-GLPGPASIVIGNGLALSSTAVVLQVLQERGESTSRHGR 745 (759)
Q Consensus 706 lL-Gls~~~ALLLGaILSaTSpaVVv~VLkELGLLnSe~GR 745 (759)
++ ++++..++++++++++|+|.....+..+-+..+.-.||
T Consensus 124 l~p~lnf~~Sl~iaaCiTaTDPiLsssIV~~g~~akrvPer 164 (467)
T KOG4505|consen 124 LIPNLNFLTSLLIAACITATDPILSSSIVGGGKFAKRVPER 164 (467)
T ss_pred HhccccHHHHHHHHHHccCCchhHHHHHhcCchHhhhChHH
Confidence 44 88999999999999999999998888866554444444
No 18
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=97.45 E-value=0.005 Score=71.75 Aligned_cols=136 Identities=13% Similarity=0.112 Sum_probs=91.2
Q ss_pred HHHHHHhcCCCchHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHhhcCChhHHhhhhhhHHHHHHHHHHHH
Q 004361 616 FVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVT 695 (759)
Q Consensus 616 Lg~LlrRL~gLP~VVGyILAGIILGPsgLGlI~~~eiLe~LAEIGLIfLLFlaGLELDl~~LKr~~K~iLvLAilgVLLp 695 (759)
+.++...+ |+++++|-.++|++++.+-... .-...++.+..+-+.+++..+|+.+|+..+...+..++.+.++.+++=
T Consensus 231 ~a~la~~~-Gls~~lGAFlAGl~l~~~~~~~-~le~~i~pf~~lll~lFFi~vG~~id~~~l~~~~~~il~~~~~~~~~K 308 (621)
T PRK03562 231 FGLLMEEV-GLSMALGAFLAGVLLASSEYRH-ALESDIEPFKGLLLGLFFIAVGMSIDFGTLLENPLRILILLLGFLAIK 308 (621)
T ss_pred HHHHHHHh-CccHHHHHHHHHHHhcCCccHH-HHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667 8888888889998888532110 012345666777777888888999999988765544433322222222
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHhhcc-H-HHHHHHHHHcCCCCChhHHHHHHHHHHH
Q 004361 696 AVVVGLVAHFVSGLPGPASIVIGNGLALSS-T-AVVLQVLQERGESTSRHGRATFSVLLFQ 754 (759)
Q Consensus 696 ~~lVG~al~~lLGls~~~ALLLGaILSaTS-p-aVVv~VLkELGLLnSe~GRlaLSalVLq 754 (759)
++..++..+++|+++..++.+|.+++.-. + -++..+-.+.|+++.+...+++.+.+++
T Consensus 309 -~~~~~~~~~~~g~~~~~a~~~gl~L~~~Gef~~vl~~~a~~~~~i~~~~~~~lv~~v~lS 368 (621)
T PRK03562 309 -IAMLWLLARPLGVPRKQRRWFAVLLGQGGEFAFVVFGAAQMANVLEPEWAKLLTLAVALS 368 (621)
T ss_pred -HHHHHHHHHHhCCCHhHHHHHHHHHhccccHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 22344555678999999999999988643 2 2455667889999998888877666554
No 19
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=97.42 E-value=0.0059 Score=70.78 Aligned_cols=135 Identities=15% Similarity=0.152 Sum_probs=91.2
Q ss_pred HHHHHHhcCCCchHHHHHHHHHhhcccccccccc-hhhHHHHHHHHHHHHHHHHhhcCChhHHhhhhhhHHHHHHHHHHH
Q 004361 616 FVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRH-VHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLV 694 (759)
Q Consensus 616 Lg~LlrRL~gLP~VVGyILAGIILGPsgLGlI~~-~eiLe~LAEIGLIfLLFlaGLELDl~~LKr~~K~iLvLAilgVLL 694 (759)
+.++.+.+ |+.+++|-.++|++++.+-.. +. ...++.+..+-+.+++..+|+.+|+..+...+..++.+.++.+++
T Consensus 228 ~a~l~~~~-Gls~~LGAFlaGl~l~~s~~~--~~l~~~i~pf~~lll~lFFi~vGm~id~~~l~~~~~~il~~~~~~l~~ 304 (601)
T PRK03659 228 SALFMDAL-GLSMALGTFIAGVLLAESEYR--HELEIAIEPFKGLLLGLFFISVGMALNLGVLYTHLLWVLISVVVLVAV 304 (601)
T ss_pred HHHHHHHh-CccHHHHHHHHHHHhcCCchH--HHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHhHHHHHHHHHHHHHH
Confidence 34566677 999999999999999864211 11 234666778888888889999999999887665444333222222
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHhhcc-HH-HHHHHHHHcCCCCChhHHHHHHHHHHH
Q 004361 695 TAVVVGLVAHFVSGLPGPASIVIGNGLALSS-TA-VVLQVLQERGESTSRHGRATFSVLLFQ 754 (759)
Q Consensus 695 p~~lVG~al~~lLGls~~~ALLLGaILSaTS-pa-VVv~VLkELGLLnSe~GRlaLSalVLq 754 (759)
= ++..++...++|+++..++.+|+.++... +. ++..+-.+.|+++......++.+.+++
T Consensus 305 K-~~~~~~~~~~~g~~~~~al~~g~~L~~~Gef~~vl~~~a~~~g~i~~~~~~~lv~~v~ls 365 (601)
T PRK03659 305 K-GLVLYLLARLYGLRSSERMQFAGVLSQGGEFAFVLFSAASSQRLLQGDQMALLLVVVTLS 365 (601)
T ss_pred H-HHHHHHHHHHhCCCHHHHHHHHHHHhccccHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 2 22344455677999999999998887654 22 344555678888888877776655544
No 20
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=97.12 E-value=0.01 Score=71.48 Aligned_cols=92 Identities=11% Similarity=0.098 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHhhcCChhHHhhhhhhHH--HHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhcc--HHHHHHH
Q 004361 657 AEFGVVFLLFNIGLELSVERLSSMKKYVF--GLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSS--TAVVLQV 732 (759)
Q Consensus 657 AEIGLIfLLFlaGLELDl~~LKr~~K~iL--vLAilgVLLp~~lVG~al~~lLGls~~~ALLLGaILSaTS--paVVv~V 732 (759)
..+.+.+++..+|+.+|+..+...+...+ .+.++.++.= ++.+++..+++|+++..++.+|++++.-. .-+++.+
T Consensus 324 ~~lflPlFFv~vGl~idl~~l~~~~~~~~~~~liv~a~~gK-~~g~~l~a~~~g~~~~eal~lG~lm~~kG~~~Lii~~i 402 (832)
T PLN03159 324 SGLLLPLFFAISGLKTNVTKIQGPATWGLLVLVIIMASAGK-IMGTIIIAFFYTMPFREGITLGFLMNTKGLVEMIVLNV 402 (832)
T ss_pred HHHHHHHHHHHhhheeeHHHhcCchHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHhcccHHHHHHHHH
Confidence 45667777888999999988754221111 1111111111 12334445678999999999999998754 2336667
Q ss_pred HHHcCCCCChhHHHHHH
Q 004361 733 LQERGESTSRHGRATFS 749 (759)
Q Consensus 733 LkELGLLnSe~GRlaLS 749 (759)
-.+.|+++.+...+++-
T Consensus 403 g~~~gvi~~~~f~~lVl 419 (832)
T PLN03159 403 GRDQEVLDDESFAVMVL 419 (832)
T ss_pred HHhcCccCchhhhHHHH
Confidence 78889987777666443
No 21
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=97.10 E-value=0.019 Score=65.68 Aligned_cols=132 Identities=14% Similarity=0.108 Sum_probs=85.1
Q ss_pred HhcCCCchHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHhhcCChhHHhhhhhhHHHHHHHHHHHHHHHHH
Q 004361 621 QKIPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVG 700 (759)
Q Consensus 621 rRL~gLP~VVGyILAGIILGPsgLGlI~~~eiLe~LAEIGLIfLLFlaGLELDl~~LKr~~K~iLvLAilgVLLp~~lVG 700 (759)
..+ ++.+++|-.++|++++..-++.- -.+....+..+.+.++...+|+.+|+..+.+.+..++.+.++.++.= ++.+
T Consensus 244 ~~l-Gls~~lGAflaGl~l~~~~~~~~-~~~~~~~~~~~f~plFFv~~G~~~d~~~l~~~~~~~~~~~~~~~v~K-~~~~ 320 (558)
T PRK10669 244 ELF-DVSFALGAFFAGMVLNESELSHR-AAHDTLPLRDAFAVLFFVSVGMLFDPMILIQQPLAVLATLAIIVFGK-SLAA 320 (558)
T ss_pred HHc-CccHHHHHHHHHHHHhCChhHHH-HHHHHhhHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 566 88999999999999875321110 01122335566677777889999999988765432222111111111 1223
Q ss_pred HHHHHHhCCChHHHHHHHHHHhhcc--HHHHHHHHHHcCCCCChhHHHHHHHHHHHH
Q 004361 701 LVAHFVSGLPGPASIVIGNGLALSS--TAVVLQVLQERGESTSRHGRATFSVLLFQV 755 (759)
Q Consensus 701 ~al~~lLGls~~~ALLLGaILSaTS--paVVv~VLkELGLLnSe~GRlaLSalVLqD 755 (759)
++...++|+++..++.+|.+++.-. .-++..+-.+.|+++.+....++.+++++=
T Consensus 321 ~~~~~~~g~~~~~a~~~gl~l~~~Gef~lii~~~~~~~gii~~~~~~~~v~~~~~t~ 377 (558)
T PRK10669 321 FFLVRLFGHSRRTALTIAASLAQIGEFAFILAGLGMALNLLPQAGQNLVLAGAILSI 377 (558)
T ss_pred HHHHHHhCCChhhHHHHHHHHhcccchHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 3444567999999999999998633 334566667899999888888777776653
No 22
>PRK03818 putative transporter; Validated
Probab=96.78 E-value=0.018 Score=66.54 Aligned_cols=103 Identities=23% Similarity=0.400 Sum_probs=68.4
Q ss_pred HHHHHHHHHhhcccc--cccccchhhHHHHHHHHHHHHHHHHhhcCChhHHhhhhh---hHHHHHHHHHHHHHHHHHHHH
Q 004361 629 VLGYLAAGILIGPYG--LSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKK---YVFGLGSAQVLVTAVVVGLVA 703 (759)
Q Consensus 629 VVGyILAGIILGPsg--LGlI~~~eiLe~LAEIGLIfLLFlaGLELDl~~LKr~~K---~iLvLAilgVLLp~~lVG~al 703 (759)
+.|-+++|+++|... +++.-+.....++.++|+++++|.+|++.-+..+...++ +...++++-++++. ++++++
T Consensus 33 ~~g~L~~gl~~G~~~~~~~~~~~~~~~~~~~~~gl~lFv~~vGl~~Gp~f~~~l~~~G~~~~~~~~~~~~~~~-~~~~~~ 111 (552)
T PRK03818 33 IGGVLFGGIIVGHFVSQFGLTLDSDMLHFIQEFGLILFVYTIGIQVGPGFFSSLRKSGLRLNLFAVLIVILGG-LVTAIL 111 (552)
T ss_pred cHHHHHHHHHHhccccccCcccChHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhhHHHHHHHHHHHHHHH-HHHHHH
Confidence 478899999999732 232224456678999999999999999999887755444 34445555555553 356666
Q ss_pred HHHhCCChHHHHHHHHHH-hhccHHHHHHHHH
Q 004361 704 HFVSGLPGPASIVIGNGL-ALSSTAVVLQVLQ 734 (759)
Q Consensus 704 ~~lLGls~~~ALLLGaIL-SaTSpaVVv~VLk 734 (759)
++++++++. ...|++. +.|++|.+....+
T Consensus 112 ~~~~~~~~~--~~~G~~aGa~T~tp~l~aa~~ 141 (552)
T PRK03818 112 HKLFGIPLP--VMLGIFSGAVTNTPALGAGQQ 141 (552)
T ss_pred HHHhCCCHH--HHHHHhhccccccHHHHHHHH
Confidence 778888755 3344433 4577776655554
No 23
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=96.72 E-value=0.032 Score=62.97 Aligned_cols=101 Identities=18% Similarity=0.124 Sum_probs=67.9
Q ss_pred hHHHHHHHHHHHHHHHHhhcCChhHH----hhhhhh--HHHHHHHHHHHHHHHHHHHHHHHhCCChHH-HHHHHHHHhhc
Q 004361 652 GTKAIAEFGVVFLLFNIGLELSVERL----SSMKKY--VFGLGSAQVLVTAVVVGLVAHFVSGLPGPA-SIVIGNGLALS 724 (759)
Q Consensus 652 iLe~LAEIGLIfLLFlaGLELDl~~L----Kr~~K~--iLvLAilgVLLp~~lVG~al~~lLGls~~~-ALLLGaILSaT 724 (759)
....+.+.-+.++.|.+|+|+..+.+ ++.++. .+.-++.+|++|.+ +.++ +...... .--.| +-++|
T Consensus 62 l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~~~a~lP~~aAlGGm~vPal-iy~~----~n~~~~~~~~GW~-Ip~AT 135 (423)
T PRK14853 62 LGTWAADGLLAIFFFVVGLELKREFVAGDLRDPSRAALPVAAALGGMIVPAL-IYVA----VNLAGGGALRGWA-IPTAT 135 (423)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhHHHhccchhhHHHHHHHHHHHHHhHHHHHH-HHHH----HhCCchhhhhhhh-hhhhh
Confidence 44566777788999999999965443 222332 23567778888853 3222 2221111 12222 34569
Q ss_pred cHHHHHHHHHHcCCC-CChhHHHHHHHHHHHHhhc
Q 004361 725 STAVVLQVLQERGES-TSRHGRATFSVLLFQVTLR 758 (759)
Q Consensus 725 SpaVVv~VLkELGLL-nSe~GRlaLSalVLqDIls 758 (759)
|++..+.+|..+|.. ++..+..+++.+++||+.+
T Consensus 136 DIAFalgvLallG~rvp~~l~~FLlaLAIvDDl~A 170 (423)
T PRK14853 136 DIAFALAVLAVIGTHLPSALRTFLLTLAVVDDLLA 170 (423)
T ss_pred HHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHH
Confidence 999999999999865 8899999999999999974
No 24
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=96.52 E-value=0.032 Score=64.69 Aligned_cols=99 Identities=21% Similarity=0.265 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHhc----CCCchHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHhhcCChhHHhhhhhhHH
Q 004361 610 LLASVIFVPIFQKI----PGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVF 685 (759)
Q Consensus 610 LlaA~LLg~LlrRL----~gLP~VVGyILAGIILGPsgLGlI~~~eiLe~LAEIGLIfLLFlaGLELDl~~LKr~~K~iL 685 (759)
+++...+++++-|+ .++-.+.|-+++|+++|-.++. ++ ..+.++|+++++|.+|++.-+..++..++..+
T Consensus 15 lfl~i~lG~~lG~iki~~~~LG~~~gvLfvgl~~G~~g~~-i~-----~~v~~~gl~lFvy~vG~~~Gp~Ff~~l~~~g~ 88 (562)
T TIGR03802 15 LFLSLALGYLIGKIKFGSFQLGGVAGSLIVAVLIGQLGIQ-ID-----PGVKAVFFALFIFAIGYEVGPQFFASLKKDGL 88 (562)
T ss_pred HHHHHHHhHhhcceEEeeeecchHHHHHHHHHHHHhcCCC-CC-----hHHHHHHHHHHHHHhhhccCHHHHHHHHhccH
Confidence 44444455555554 1344577899999999976543 22 23677999999999999999998877665433
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHhCCChHHH
Q 004361 686 GLGSAQVLVT--AVVVGLVAHFVSGLPGPAS 714 (759)
Q Consensus 686 vLAilgVLLp--~~lVG~al~~lLGls~~~A 714 (759)
.+.++.++++ .+++.+++++++|++...+
T Consensus 89 ~~~~~a~~~~~~~~~~~~~~~~~~g~~~~~~ 119 (562)
T TIGR03802 89 REIILALVFAVSGLITVYALAKIFGLDKGTA 119 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 3333332222 2345556667788875433
No 25
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=96.48 E-value=0.018 Score=58.59 Aligned_cols=88 Identities=26% Similarity=0.401 Sum_probs=63.8
Q ss_pred HHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHhhcCChh-----HHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 004361 631 GYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVE-----RLSSMKKYVFGLGSAQVLVTAVVVGLVAHF 705 (759)
Q Consensus 631 GyILAGIILGPsgLGlI~~~eiLe~LAEIGLIfLLFlaGLELDl~-----~LKr~~K~iLvLAilgVLLp~~lVG~al~~ 705 (759)
+.+++|+++|-..... ......+.++.+.++||.+|+++--+ .+++.+++.+.+.+..++.+. +.++++.+
T Consensus 3 ~~li~Gi~lG~~~~~~---~~~~~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlGSl-lgg~l~~~ 78 (191)
T PF03956_consen 3 IALILGILLGYFLRPP---FSLIDKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILGSL-LGGLLASL 78 (191)
T ss_pred eeHHHHHHHHHHhccc---ccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 4578899999764432 12225778899999999999988543 455566778888877777764 46677777
Q ss_pred HhCCChHHHHHHHHHHh
Q 004361 706 VSGLPGPASIVIGNGLA 722 (759)
Q Consensus 706 lLGls~~~ALLLGaILS 722 (759)
++++++..++.++..+.
T Consensus 79 ll~~~~~~~lav~sG~G 95 (191)
T PF03956_consen 79 LLGLSLKESLAVASGFG 95 (191)
T ss_pred HhcCCHHHHHHHHccCc
Confidence 78999888888777654
No 26
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=96.44 E-value=0.12 Score=57.59 Aligned_cols=113 Identities=17% Similarity=0.195 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHHHhhcccccccccchhhHHHHHH-HHHHHHHHHHhhcCChhHHhhhhhhHHHH
Q 004361 609 LLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAE-FGVVFLLFNIGLELSVERLSSMKKYVFGL 687 (759)
Q Consensus 609 ILlaA~LLg~LlrRL~gLP~VVGyILAGIILGPsgLGlI~~~eiLe~LAE-IGLIfLLFlaGLELDl~~LKr~~K~iLvL 687 (759)
++++...+.++.+.+ |+++++|-.++|+++..+-....+-.+.++.+.+ +-+.++...+|+.+|++.+...+..++.+
T Consensus 227 ~l~i~l~~a~l~e~~-gls~ilGAFlaGl~ls~~~~~~~~l~~~i~~~~~~~fiplFFi~vG~~~dl~~l~~~~~~~l~~ 305 (397)
T COG0475 227 VLLLVLGAAYLAELL-GLSMILGAFLAGLLLSESEYRKHELEEKIEPFGDGLFIPLFFISVGMSLDLGVLLENLLLILLL 305 (397)
T ss_pred HHHHHHHHHHHHHHh-ChhHHHHHHHHHHHhcccccchHHHHHHHHhHHhHHHHHHHHHHhhHHcCHHHHhccHHHHHHH
Confidence 334444555677777 9999999999999998763332222456788888 88889999999999999998877764444
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhh
Q 004361 688 GSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLAL 723 (759)
Q Consensus 688 AilgVLLp~~lVG~al~~lLGls~~~ALLLGaILSa 723 (759)
....++.= ++.+++..+.+|++...++.+|..+..
T Consensus 306 ~~~~i~~K-~~~~~~~~~~~g~~~~~~~~~g~~~~~ 340 (397)
T COG0475 306 VALAILGK-ILGAYLAARLLGFSKRLALGIGLLLRQ 340 (397)
T ss_pred HHHHHHHH-HHHHHHHHHHHcCcHHHHHHHHhhhhh
Confidence 44433332 334555566778777777766666654
No 27
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=96.34 E-value=0.091 Score=51.32 Aligned_cols=104 Identities=17% Similarity=0.148 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHhcCCCc--hHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHhhcCChhHHhhhhhhHH
Q 004361 608 WLLLASVIFVPIFQKIPGGS--PVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVF 685 (759)
Q Consensus 608 LILlaA~LLg~LlrRL~gLP--~VVGyILAGIILGPsgLGlI~~~eiLe~LAEIGLIfLLFlaGLELDl~~LKr~~K~iL 685 (759)
++++++.+.+++++++ ++| .++|-++++.++.-.+....+.+. .+..++.+++-..+|.+++...++...+...
T Consensus 2 ~~~~~~~~~g~l~~~l-~~Pa~~llG~mi~~~~~~~~~~~~~~~P~---~~~~~~qviiG~~iG~~f~~~~l~~~~~~~~ 77 (156)
T TIGR03082 2 LLLLVGLAGGLLASLL-GLPAAWLLGPLLAGAVLSLAGGLEITLPP---WLLALAQVVIGILIGSRFTREVLAELKRLWP 77 (156)
T ss_pred HHHHHHHHHHHHHHHH-CCCcHHHHHHHHHHHHHHhcCCccCCCCH---HHHHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 3456777888899998 887 677777777777643322222233 4566777788889999999999887665433
Q ss_pred H---HHHHHHHHHHHHHHHHHHHHhCCChHHHHH
Q 004361 686 G---LGSAQVLVTAVVVGLVAHFVSGLPGPASIV 716 (759)
Q Consensus 686 v---LAilgVLLp~~lVG~al~~lLGls~~~ALL 716 (759)
. ..+..+++ .++.+++++++.|+++..+++
T Consensus 78 ~~l~~~~~~l~~-~~~~~~~l~~~~~~~~~ta~L 110 (156)
T TIGR03082 78 AALLSTVLLLAL-SALLAWLLARLTGVDPLTAFL 110 (156)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHCCCHHHHHH
Confidence 2 11222222 233455556667888777754
No 28
>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=96.33 E-value=0.0093 Score=69.38 Aligned_cols=131 Identities=10% Similarity=0.046 Sum_probs=95.0
Q ss_pred CchHHHHHHHHHhhcccccccccc-hhhH--HHHHHHHHHHHHHHHhhcCChhHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 004361 626 GSPVLGYLAAGILIGPYGLSIIRH-VHGT--KAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLV 702 (759)
Q Consensus 626 LP~VVGyILAGIILGPsgLGlI~~-~eiL--e~LAEIGLIfLLFlaGLELDl~~LKr~~K~iLvLAilgVLLp~~lVG~a 702 (759)
+|--.-.|+.|+++|-...+.-.. +..+ ..+--+-+..++|.+|+-|.-+.+..+...++..+++|.+.-.+.+|..
T Consensus 68 ~PES~lLI~~Gl~lG~ii~~~~~~~~~~L~s~vFFlyLLPPIvlDAGYfMp~r~Ff~NlgtILlfAVvGTi~Na~~~g~s 147 (670)
T KOG1966|consen 68 VPESCLLIILGLVLGGIIKALATIAPFFLESDVFFLYLLPPIVLDAGYFMPNRAFFENLGTILLFAVVGTIWNAFTIGAS 147 (670)
T ss_pred CchhHHHHHHHHHHHHHHHhhhccccccccccchhhhhcCHHHhcccccCccHHHHhccchhhhHHHHHHHHHHHHHHHH
Confidence 577667888999998654332111 1111 2233345678899999999999999988889988888888765555554
Q ss_pred HHH-----HhC--CChHHHHHHHHHHhhccHHHHHHHHHHcCCCCChhHHHHHHHHHHHHhh
Q 004361 703 AHF-----VSG--LPGPASIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQVTL 757 (759)
Q Consensus 703 l~~-----lLG--ls~~~ALLLGaILSaTSpaVVv~VLkELGLLnSe~GRlaLSalVLqDIl 757 (759)
++. ++| .+...-+++|.++|+.+|+.|+.++.|.+... -+=-++++-++++|-+
T Consensus 148 L~~i~~~glf~~~~glld~LlFgSLIsAVDPVAVLaVFEEihVNe-~LfI~VFGESLlNDaV 208 (670)
T KOG1966|consen 148 LYAISLSGLFGMSIGLLDILLFGSLISAVDPVAVLAVFEEIHVNE-VLFIIVFGESLLNDAV 208 (670)
T ss_pred HHHHHHhhhcCCCchHHHHHHHHHHHHhcCchhhhhhhhhhcccc-EEEeeeehhhhhcCce
Confidence 332 245 34778899999999999999999999998644 3445788888888854
No 29
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=96.22 E-value=0.059 Score=62.55 Aligned_cols=108 Identities=18% Similarity=0.270 Sum_probs=70.8
Q ss_pred hHHHHHHHHHhhccccc-ccc---cchhhHHHHHHHHHHHHHHHHhhcCChhHHh---hhhhhHHHHHHHHHHHHHHHHH
Q 004361 628 PVLGYLAAGILIGPYGL-SII---RHVHGTKAIAEFGVVFLLFNIGLELSVERLS---SMKKYVFGLGSAQVLVTAVVVG 700 (759)
Q Consensus 628 ~VVGyILAGIILGPsgL-GlI---~~~eiLe~LAEIGLIfLLFlaGLELDl~~LK---r~~K~iLvLAilgVLLp~~lVG 700 (759)
...|-+++|+++|..+- +.. -+.....++.++|+.++++.+|+.--+..+. +.+...+.++++-.++|.++..
T Consensus 417 ~~~g~l~~gl~~g~~~~~~~~~~~~p~~a~~~l~~~GL~lFla~vG~~aG~~f~~~l~~~G~~~~~~g~~~~~~~~~~~~ 496 (562)
T TIGR03802 417 TGGGALISGLVFGWLRSKHPTFGNIPSSASWLLKDLGLALFIAVVGLSAGPQAVTAIKEMGLTLFLLGIVVTILPLIITM 496 (562)
T ss_pred hhHHHHHHHHHHHHhcccCCcceecCHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 35688899999987531 111 1334566899999999999999998876654 3444455566665556654444
Q ss_pred HHHHHHhCCChHHHHHHHHH-HhhccHHHHHHHHHHcC
Q 004361 701 LVAHFVSGLPGPASIVIGNG-LALSSTAVVLQVLQERG 737 (759)
Q Consensus 701 ~al~~lLGls~~~ALLLGaI-LSaTSpaVVv~VLkELG 737 (759)
++.++++++++. ..+|++ =+.|+||.+.......+
T Consensus 497 ~~~~~~~~~~~~--~~~G~~aG~~t~t~~l~~a~~~~~ 532 (562)
T TIGR03802 497 LIGKYVLKYDPA--LLLGALAGARTATPALGAVLERAG 532 (562)
T ss_pred HHHHHHhCCCHH--HHHHHhhccCCCcHHHHHHHHhcC
Confidence 444477888755 444544 45688888777766543
No 30
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=96.15 E-value=0.099 Score=56.65 Aligned_cols=110 Identities=13% Similarity=0.134 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCc--hHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHhhcCChhHHhhh
Q 004361 603 LFDVLWLLLASVIFVPIFQKIPGGS--PVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSM 680 (759)
Q Consensus 603 LlqL~LILlaA~LLg~LlrRL~gLP--~VVGyILAGIILGPsgLGlI~~~eiLe~LAEIGLIfLLFlaGLELDl~~LKr~ 680 (759)
+..+.+++.++.+.+++++|+ ++| .++|-++++.++.-.+......+..+. .++.+++=..+|.+++...++..
T Consensus 154 ~~~l~~l~~~~~~g~~l~~~l-~iPa~~llGpml~~a~~~~~~~~~~~~P~~l~---~~aqv~iG~~iG~~f~~~~l~~~ 229 (318)
T PF05145_consen 154 WLWLALLALAALAGGLLARRL-RIPAPWLLGPMLVSAILNLFGGPSFSLPPWLV---NAAQVLIGASIGSRFTRETLREL 229 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHHHHhCCCCCCCHHHH---HHHHHHHHHHHHccccHHHHHHH
Confidence 456677778888889999998 876 567777777777655332233344444 45555666689999999998876
Q ss_pred hhhHHH--HHHHHHHHHHHHHHHHHHHHhCCChHHHHH
Q 004361 681 KKYVFG--LGSAQVLVTAVVVGLVAHFVSGLPGPASIV 716 (759)
Q Consensus 681 ~K~iLv--LAilgVLLp~~lVG~al~~lLGls~~~ALL 716 (759)
++.... +.+..+++..++++++++++.|+++..+++
T Consensus 230 ~~~~~~~l~~~~~~l~~~~~~a~~l~~~~~~~~~t~~L 267 (318)
T PF05145_consen 230 RRLLPPALLSTLLLLALCALFAWLLSRLTGIDFLTALL 267 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 664331 222222222344566666677887665543
No 31
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=96.10 E-value=0.093 Score=51.86 Aligned_cols=107 Identities=21% Similarity=0.275 Sum_probs=70.2
Q ss_pred HHHHHHHHHhhccccc-ccc---cchhhHHHHHHHHHHHHHHHHhhcCChhHHhhhhh----hHHHHHHHHHHHHHHHHH
Q 004361 629 VLGYLAAGILIGPYGL-SII---RHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKK----YVFGLGSAQVLVTAVVVG 700 (759)
Q Consensus 629 VVGyILAGIILGPsgL-GlI---~~~eiLe~LAEIGLIfLLFlaGLELDl~~LKr~~K----~iLvLAilgVLLp~~lVG 700 (759)
..|-+++|+++|..+. +.+ -+......+.++|+.++++.+|+.--...+...++ ..+.++.+-++++.+++.
T Consensus 24 ~~G~L~vgL~~G~~~~~~p~~~~~p~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v~~~~~~~~~ 103 (154)
T TIGR01625 24 AGGVLFVGLLLGHFGATGPLTWYIPFSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALITVVPTLLVA 103 (154)
T ss_pred cHHHHHHHHHHHhccccCCcceecChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 6688999999997531 111 12345678999999999999999988877654333 233444444455544455
Q ss_pred HHHHHHhCCChHHHHHHHHH-HhhccHHHHHHHHHHcC
Q 004361 701 LVAHFVSGLPGPASIVIGNG-LALSSTAVVLQVLQERG 737 (759)
Q Consensus 701 ~al~~lLGls~~~ALLLGaI-LSaTSpaVVv~VLkELG 737 (759)
++.++++++++. ...|++ =+.|++|.+....+..+
T Consensus 104 ~~~~~~~~~~~~--~~~G~~aGa~T~tpaL~aa~~~~~ 139 (154)
T TIGR01625 104 VALIKLLRINYA--LTAGMLAGATTNTPALDAANDTLR 139 (154)
T ss_pred HHHHHHhCCCHH--HHHHHHhccccChHHHHHHHHHhc
Confidence 556677888764 444544 35688888777766543
No 32
>PRK03818 putative transporter; Validated
Probab=95.88 E-value=0.081 Score=61.37 Aligned_cols=129 Identities=19% Similarity=0.221 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCch------HHHHHHHHHhhccccc-cc---ccchhhHHHHHHHHHHHHHHHHhhcCC
Q 004361 604 FDVLWLLLASVIFVPIFQKIPGGSP------VLGYLAAGILIGPYGL-SI---IRHVHGTKAIAEFGVVFLLFNIGLELS 673 (759)
Q Consensus 604 lqL~LILlaA~LLg~LlrRL~gLP~------VVGyILAGIILGPsgL-Gl---I~~~eiLe~LAEIGLIfLLFlaGLELD 673 (759)
..+.+.++++.+++.+-=++++.|. .-|-+++|+++|.... +. .-+.....++.++|+.++++.+|+.--
T Consensus 372 ~~l~l~I~lg~llG~i~~~i~g~~~~~~LG~~~G~L~~gl~~g~~~~~~~~~~~~p~~a~~~l~~~GL~lFla~vGl~aG 451 (552)
T PRK03818 372 LPVFIGIGLGVLLGSIPFFIPGFPAALKLGLAGGPLIVALILGRIGSIGKLYWFMPPSANLALRELGIVLFLAVVGLKSG 451 (552)
T ss_pred HHHHHHHHHHHhhceeeEecCCCccceeeecchHHHHHHHHHHhccCCCCceeecCHHHHHHHHHHhHHHHHHHHHhhhh
Confidence 4445555666666655444444443 4578999999997542 11 123445678999999999999999887
Q ss_pred hhHHhh----hhhhHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHH-HhhccHHHHHHHHH
Q 004361 674 VERLSS----MKKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNG-LALSSTAVVLQVLQ 734 (759)
Q Consensus 674 l~~LKr----~~K~iLvLAilgVLLp~~lVG~al~~lLGls~~~ALLLGaI-LSaTSpaVVv~VLk 734 (759)
...+.. .+...+.+|++-.++|.++..++.++++++++. ..+|++ =+.|+||....+..
T Consensus 452 ~~f~~~~~~~~G~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~--~~~G~~aG~~t~tp~l~~a~~ 515 (552)
T PRK03818 452 GDFVDTLVNGEGLSWIGYGFLITAVPLLIVGILARMLAKMNYL--TLCGMLAGSMTDPPALAFANN 515 (552)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH--HHHHHHhccCCCcHHHHHHhc
Confidence 766544 244455666666666654333344677888755 445544 45678887766654
No 33
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=95.79 E-value=0.12 Score=51.73 Aligned_cols=109 Identities=21% Similarity=0.281 Sum_probs=68.7
Q ss_pred CCchHHHHHHHHHhhccccc--ccccchhhHHHHHHHHHHHHHHHHhhcCChhHHhh---hhhhHHHHHHHHHHHHHHHH
Q 004361 625 GGSPVLGYLAAGILIGPYGL--SIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSS---MKKYVFGLGSAQVLVTAVVV 699 (759)
Q Consensus 625 gLP~VVGyILAGIILGPsgL--GlI~~~eiLe~LAEIGLIfLLFlaGLELDl~~LKr---~~K~iLvLAilgVLLp~~lV 699 (759)
++-...|-+++|+++|...- ....+......+.++|+.++++.+|++--+..+.. .+.+.+.++++-.+++.++.
T Consensus 22 ~LG~a~G~L~vgL~~G~~~~~~~~~~~~~~~~~l~~~GL~lFl~~VGl~aG~~F~~~l~~~G~~~~~~~~~i~~~~~~~~ 101 (169)
T PF06826_consen 22 SLGAAGGVLFVGLILGALGRTGPIFLPISAPSFLRQLGLALFLAAVGLSAGPGFFSSLKRGGLKLLLLGVIITLVPLLIA 101 (169)
T ss_pred eccccHHHHHHHHHHHHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34445588999999996531 01124456678999999999999999988766544 34445556665555554433
Q ss_pred HHHHHHHhCCChHHHHHHHHHH-hhccHHHHHHHHHH
Q 004361 700 GLVAHFVSGLPGPASIVIGNGL-ALSSTAVVLQVLQE 735 (759)
Q Consensus 700 G~al~~lLGls~~~ALLLGaIL-SaTSpaVVv~VLkE 735 (759)
.++.++++++++. ...|+.. +.|++|......+.
T Consensus 102 ~~~~~~~~~l~~~--~~~G~~aGa~T~tp~L~~A~~~ 136 (169)
T PF06826_consen 102 LVIGRYLFKLNPG--IAAGILAGALTSTPALAAAQEA 136 (169)
T ss_pred HHHHHHHcCCCHH--HHHHHHHccccCcHHHHHHHHh
Confidence 3333447788744 3344443 45777776666655
No 34
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=95.75 E-value=0.28 Score=55.09 Aligned_cols=151 Identities=16% Similarity=0.117 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHHHHHh--cCCCchHHHHHHHHHhhcccc--cc--cccchhhHHHHHHHHHHHHHHHHhhcCChhHHhh
Q 004361 606 VLWLLLASVIFVPIFQK--IPGGSPVLGYLAAGILIGPYG--LS--IIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSS 679 (759)
Q Consensus 606 L~LILlaA~LLg~LlrR--L~gLP~VVGyILAGIILGPsg--LG--lI~~~eiLe~LAEIGLIfLLFlaGLELDl~~LKr 679 (759)
+.+.+.++.++...+++ + .+|..++-+++|+++.... .+ .+. ...+..++.+.+-+++..+=..+++..+..
T Consensus 224 i~iai~iG~~i~~~l~~~~~-~lP~fv~am~~giiirni~~~~~~~~~~-~~~i~~I~~~sLdlfl~~AlmsL~L~~l~~ 301 (398)
T TIGR00210 224 IAVCLLVGYELNDLVAKTAL-MLPTFVWCLFVGVILRNPLSFKKFPWVA-ERAVSVIGNVSLSLFLAIALMSLQLWELAD 301 (398)
T ss_pred HHHHHHHHHHHHHHHHHcCC-CCCchHHHHHHHHHHHHHHHHhCccccc-hHHHHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 33344455555555554 4 6899999999999998642 11 222 347889999999999988888999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHH----HHHHHHhhccHHHH--HHHHHHcCCCCChhHHHHHHHHHH
Q 004361 680 MKKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASI----VIGNGLALSSTAVV--LQVLQERGESTSRHGRATFSVLLF 753 (759)
Q Consensus 680 ~~K~iLvLAilgVLLp~~lVG~al~~lLGls~~~AL----LLGaILSaTSpaVV--v~VLkELGLLnSe~GRlaLSalVL 753 (759)
.+-+.+.+.+.+++++++.+-++...++|-++..++ ..|..+.+|.+++. -.+-+..|..+..+=-+=+-.+.+
T Consensus 302 ~a~Plliil~~q~i~~~l~~~fv~fr~mg~~ydaaV~~ag~~G~~lGatptaianm~av~~~yg~s~~af~ivPlvgaf~ 381 (398)
T TIGR00210 302 LAGPIALILLVQVMFMALYAIFVTFRLMGKDYDAAVLCAGHCGFGLGATPTAIANMQAVTERFGPSHQAFIVVPLVGAFF 381 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhccchHHHHHHhcccccccccchHHHHHHHHHHHhccCCCCcceehhhhHHHHH
Confidence 999989899999988865555566666777755554 45555666665553 345566776666555555556677
Q ss_pred HHhhc
Q 004361 754 QVTLR 758 (759)
Q Consensus 754 qDIls 758 (759)
-|+++
T Consensus 382 id~~n 386 (398)
T TIGR00210 382 IDIIN 386 (398)
T ss_pred HHHhh
Confidence 77653
No 35
>PRK04972 putative transporter; Provisional
Probab=95.65 E-value=0.12 Score=60.19 Aligned_cols=114 Identities=18% Similarity=0.193 Sum_probs=70.0
Q ss_pred HHHHHHHHHHhc----CCCchHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHhhcCChhHHhhhhh---hH
Q 004361 612 ASVIFVPIFQKI----PGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKK---YV 684 (759)
Q Consensus 612 aA~LLg~LlrRL----~gLP~VVGyILAGIILGPsgLGlI~~~eiLe~LAEIGLIfLLFlaGLELDl~~LKr~~K---~i 684 (759)
++..++.++-++ ..+-...|-+++|+++|..++.. + ..+.++|+++++|.+|+..-+..+...++ +.
T Consensus 19 ~~i~lG~~lG~i~~~~~~LG~~~g~L~vgl~~g~~~~~~---~---~~~~~~gl~lF~~~vG~~~Gp~F~~~l~~~g~~~ 92 (558)
T PRK04972 19 VVLALGLCLGKLRLGSIQLGNSIGVLVVSLLLGQQHFSI---N---TDALNLGFMLFIFCVGVEAGPNFFSIFFRDGKNY 92 (558)
T ss_pred HHHHHHHhhhceEEeeEecCcchHHHHHHHHHHhCCCCC---C---hHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhHHH
Confidence 333444444444 13444568899999999865432 1 23468999999999999999887655443 34
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHH-hhccHHHHHHHHH
Q 004361 685 FGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGL-ALSSTAVVLQVLQ 734 (759)
Q Consensus 685 LvLAilgVLLp~~lVG~al~~lLGls~~~ALLLGaIL-SaTSpaVVv~VLk 734 (759)
..++++.++++. ++++++++++|+++..+ .|++. +.|++|.+.....
T Consensus 93 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~G~~aGa~T~tp~l~~a~~ 140 (558)
T PRK04972 93 LMLALVMVGSAL-VIALGLGKLFGWDIGLT--AGMLAGSMTSTPVLVGAGD 140 (558)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHhCCCHHHH--HHHhhccccCcHHHHHHHH
Confidence 445555444443 34555667788875533 33332 3566666655544
No 36
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=95.41 E-value=0.38 Score=52.20 Aligned_cols=108 Identities=21% Similarity=0.309 Sum_probs=72.9
Q ss_pred cCCCchHHHHHHHHHhhcccccccccc----hhh-HHHHHHHHHHHHHHHHhhcCChhHHhhhhhhHHHHHHHHHHHHHH
Q 004361 623 IPGGSPVLGYLAAGILIGPYGLSIIRH----VHG-TKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAV 697 (759)
Q Consensus 623 L~gLP~VVGyILAGIILGPsgLGlI~~----~ei-Le~LAEIGLIfLLFlaGLELDl~~LKr~~K~iLvLAilgVLLp~~ 697 (759)
.+++++++--|+.|+++|+..++..+. ..+ -+.+-.+|+++ .|+++++..+.+.+...+.+.++.++++++
T Consensus 23 ~~~l~~~~~AillG~~i~n~~~~~~~~~~~Gi~~~~k~~Lr~gIVL----lG~~l~~~~i~~~G~~~~~~~~~~v~~~~~ 98 (305)
T PF03601_consen 23 LPGLGALLIAILLGMLIGNLFFGLPARFKPGIKFSSKKLLRLGIVL----LGFRLSFSDILALGWKGLLIIIIVVILTFL 98 (305)
T ss_pred ccCccHHHHHHHHHHHHhhhccCCcHHHHhHHHHHHHHHHHHHHHH----HCccccHHHHHHhCccHHHHHHHHHHHHHH
Confidence 346777777899999999732333221 122 24666777665 589999999999888777676666666643
Q ss_pred HHHHHHH-HHhCCChHHHHHHHHHHhh---ccHHHHHHHHHH
Q 004361 698 VVGLVAH-FVSGLPGPASIVIGNGLAL---SSTAVVLQVLQE 735 (759)
Q Consensus 698 lVG~al~-~lLGls~~~ALLLGaILSa---TSpaVVv~VLkE 735 (759)
+++.+. .++|++...++++|+..++ |+...+.++++-
T Consensus 99 -~~~~lg~r~~~l~~~~~~Lia~GtsICG~SAi~A~a~~i~a 139 (305)
T PF03601_consen 99 -LTYWLGRRLFGLDRKLAILIAAGTSICGASAIAATAPVIKA 139 (305)
T ss_pred -HHHHHHHHHhCCCHHHHHHHHhhcccchHHHHHHHcccccC
Confidence 555556 7889998888888876654 444445555543
No 37
>PRK04972 putative transporter; Provisional
Probab=95.41 E-value=0.15 Score=59.19 Aligned_cols=133 Identities=17% Similarity=0.201 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCc----hHHHHHHHHHhhcccc-cccc---cchhhHHHHHHHHHHHHHHHHhhcCCh
Q 004361 603 LFDVLWLLLASVIFVPIFQKIPGGS----PVLGYLAAGILIGPYG-LSII---RHVHGTKAIAEFGVVFLLFNIGLELSV 674 (759)
Q Consensus 603 LlqL~LILlaA~LLg~LlrRL~gLP----~VVGyILAGIILGPsg-LGlI---~~~eiLe~LAEIGLIfLLFlaGLELDl 674 (759)
++.+++-++++.+++.+-=++.+.| ..-|-+++|+++|... .+.+ -+.....++.++|+.+++..+|+.--.
T Consensus 383 ~~~~~~Gi~lG~llG~i~i~~~g~~~~LG~agG~L~~gl~~g~~~~~~~~~~~~p~~a~~~l~~~GL~lFla~vGl~aG~ 462 (558)
T PRK04972 383 LLAFCAFFIIGLMIGMITFQFSNFSFGIGNAAGLLFAGIMLGFLRANHPTFGYIPQGALNMVKEFGLMVFMAGVGLSAGS 462 (558)
T ss_pred HHHHHHHHHHHHHHcceeEeeCCeeeeccccHHHHHHHHHHHhccccCCCceeeCHHHHHHHHHHhHHHHHHHHHHhhhH
Confidence 3555555677777776655554443 2457899999999642 1111 134456789999999999999998776
Q ss_pred hHH---hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHH-hhccHHHHHHHHHHcC
Q 004361 675 ERL---SSMKKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGL-ALSSTAVVLQVLQERG 737 (759)
Q Consensus 675 ~~L---Kr~~K~iLvLAilgVLLp~~lVG~al~~lLGls~~~ALLLGaIL-SaTSpaVVv~VLkELG 737 (759)
..+ ++.+...+.++++-.++|.++..++.+|++++++. .++|++. +.|+||....+....+
T Consensus 463 ~f~~~~~~~g~~~~~~g~~~t~~~~~~~~~~~~~~~k~~~~--~~~G~~aG~~t~~~~l~~~~~~~~ 527 (558)
T PRK04972 463 GINNGLGAVGGQMLIAGLIVSLVPVVICFLFGAYVLRMNRA--LLFGAIMGARTCAPAMEIISDTAR 527 (558)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH--HHHHHHhCCCCCcHHHHHHHhhcC
Confidence 554 34455566677766677765555555678888866 4455543 5678887777766554
No 38
>PRK05326 potassium/proton antiporter; Reviewed
Probab=95.13 E-value=0.17 Score=58.21 Aligned_cols=104 Identities=15% Similarity=0.184 Sum_probs=60.0
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHhhccccccc-ccchhhHHHHHHHHHHHHHHHHhhcCChhHHhhhhhhHHHHHHHHHH
Q 004361 615 IFVPIFQKIPGGSPVLGYLAAGILIGPYGLSI-IRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVL 693 (759)
Q Consensus 615 LLg~LlrRL~gLP~VVGyILAGIILGPsgLGl-I~~~eiLe~LAEIGLIfLLFlaGLELDl~~LKr~~K~iLvLAilgVL 693 (759)
+...+...+ +.+.+++-.++|+++|..-... ..-....+.++.+..+++.+..|+.+|+..+.......+.++++.++
T Consensus 234 ~~~~~a~~l-g~Sg~la~~iaGl~l~n~~~~~~~~i~~~~~~l~~l~~~~~Fv~lGl~~~~~~l~~~~~~~l~i~~~l~~ 312 (562)
T PRK05326 234 LIFALTAAL-GGSGFLAVYLAGLVLGNRPIRHRHSILRFFDGLAWLAQIGMFLVLGLLVTPSRLLDIALPALLLALFLIL 312 (562)
T ss_pred HHHHHHHHH-CCcHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 334455556 7788888888888887542111 11123456677778888888999999999887544333333322111
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHH
Q 004361 694 VTAVVVGLVAHFVSGLPGPASIVIGN 719 (759)
Q Consensus 694 Lp~~lVG~al~~lLGls~~~ALLLGa 719 (759)
+.=.+..++..+.++++|...++++.
T Consensus 313 vaR~l~v~l~~~~~~~~~~e~~~i~~ 338 (562)
T PRK05326 313 VARPLAVFLSLLPFRFNLREKLFISW 338 (562)
T ss_pred HHHHHHHHHHHccCCCCHhhhheeee
Confidence 11011112223345778777776664
No 39
>COG2855 Predicted membrane protein [Function unknown]
Probab=94.97 E-value=0.46 Score=52.48 Aligned_cols=105 Identities=18% Similarity=0.271 Sum_probs=71.4
Q ss_pred CCchHHHHHHHHHhhccccccccc---chh-hHHHHHHHHHHHHHHHHhhcCChhHHhhhhhhHHHHHHHHHHHHHHHHH
Q 004361 625 GGSPVLGYLAAGILIGPYGLSIIR---HVH-GTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVG 700 (759)
Q Consensus 625 gLP~VVGyILAGIILGPsgLGlI~---~~e-iLe~LAEIGLIfLLFlaGLELDl~~LKr~~K~iLvLAilgVLLp~~lVG 700 (759)
++|+.+--|+.||++|......-. ..+ .-+.+-++|+++ -|+++++..+...+...+.+-...+..+ ++++
T Consensus 36 ~l~al~lAIllGi~l~~l~~~~~~~~~GI~fs~k~LLr~gIvL----lG~~ltl~~i~~~G~~~v~~~~~~l~~t-~~~~ 110 (334)
T COG2855 36 GLSALTLAILLGILLGILPQIPAQTSAGITFSSKKLLRLGIVL----LGFRLTLSDIADVGGSGVLIIAITLSST-FLFA 110 (334)
T ss_pred CchHHHHHHHHHHHHhccccchhhhccchhhhHHHHHHHHHHH----HcceeeHHHHHHcCccHHHHHHHHHHHH-HHHH
Confidence 678888889999999943211101 111 125666777775 5889999999998887776655555555 4466
Q ss_pred HHHHHHhCCChHHHHHHHHHHhh---ccHHHHHHHHH
Q 004361 701 LVAHFVSGLPGPASIVIGNGLAL---SSTAVVLQVLQ 734 (759)
Q Consensus 701 ~al~~lLGls~~~ALLLGaILSa---TSpaVVv~VLk 734 (759)
++++.++|+++..++++|+..++ ++...+.++++
T Consensus 111 ~~lg~~lgld~~~a~Lia~GssICGasAiaA~~pvik 147 (334)
T COG2855 111 YFLGKLLGLDKKLALLIAAGSSICGASAIAATAPVIK 147 (334)
T ss_pred HHHHHHhCCCHHHHHHHHccchhhHHHHHHHhCCcCC
Confidence 66677889999999999876654 44444555554
No 40
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=94.67 E-value=12 Score=45.51 Aligned_cols=12 Identities=0% Similarity=0.277 Sum_probs=4.9
Q ss_pred HHHHHHhhchhH
Q 004361 517 LMEYARKQLPKL 528 (759)
Q Consensus 517 l~~s~~~q~pkl 528 (759)
.-+..++-||+|
T Consensus 1037 v~~~f~~~F~~l 1048 (1179)
T TIGR02168 1037 TFDQVNENFQRV 1048 (1179)
T ss_pred HHHHHHHHHHHH
Confidence 333333444444
No 41
>COG2431 Predicted membrane protein [Function unknown]
Probab=94.62 E-value=0.45 Score=51.54 Aligned_cols=160 Identities=23% Similarity=0.329 Sum_probs=91.0
Q ss_pred hHHHHHH-HHhhhhhhhcchHHhhhhcccCCccccchhhhhhccchhhHHHH---hcchHhhhhhhccCCccccchhHHH
Q 004361 527 KLVLGFL-LFGAGVAFYANQAERSSLQLQQPDVITTSIEEASSNAKPLIREV---KKLPKRIKKLLDMLPEQEINEEEAS 602 (759)
Q Consensus 527 klv~g~~-l~gag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~plV~~c---~~~~~~~~~li~~lp~~~~~~~~~l 602 (759)
-+|.+++ .+|++.++..|.+-+-.-. +.++++.-+..+.-+++... +..|...+...+.+|.-.+ .
T Consensus 34 ~~vy~ilf~mg~sl~~~~nl~~~L~~~-----~~~~a~~~i~i~~~n~vAl~~l~~~~p~~~~~~~~~~p~rs~-~---- 103 (297)
T COG2431 34 WLVYLILFTMGISLAVLDNLVSNLVAI-----ALYSAVFIIIILLANLVALALLERLLPWRIKHQQEKLPSRSM-A---- 103 (297)
T ss_pred HHHHHHHHHhcchHHHHhHHHHhHHHH-----HHHHHHHHHHHHhhhHHHHHHHHccCcchhhcccCcCCccch-h----
Confidence 4566665 6777788998877644222 34577777777777776542 3334444443444442221 0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHhhcCC---hhHHh-
Q 004361 603 LFDVLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELS---VERLS- 678 (759)
Q Consensus 603 LlqL~LILlaA~LLg~LlrRL~gLP~VVGyILAGIILGPsgLGlI~~~eiLe~LAEIGLIfLLFlaGLELD---l~~LK- 678 (759)
. ..+.+.++.+.|+++|-..-.+.+. .+...+..+.+++|.+|..+. ....+
T Consensus 104 -~--------------------~s~k~~~~vl~g~~~G~l~~~~~~~---~~~a~~~~L~~LlF~iGi~l~n~g~~~~~~ 159 (297)
T COG2431 104 -L--------------------ESIKLLGVVLLGLALGLLTGSFLNF---PENASEYLLYLLLFLIGIQLGNSGISLRQV 159 (297)
T ss_pred -h--------------------hHHHHHHHHHHHHHHHHHhcccccC---chhHHHHHHHHHHHHHHHHhccccchhhhH
Confidence 0 0112344556666666543333332 345678899999999999887 22111
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 004361 679 SMKKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGL 721 (759)
Q Consensus 679 r~~K~iLvLAilgVLLp~~lVG~al~~lLGls~~~ALLLGaIL 721 (759)
...|+.+.+++..++.. ++.|.+..+++++|+.+++.++..+
T Consensus 160 ~Lnk~gl~l~~i~ilss-liGG~iaa~~l~lpl~~~lAmasG~ 201 (297)
T COG2431 160 LLNKRGLILAFITLLSS-LIGGLIAAFLLDLPLTTGLAMASGF 201 (297)
T ss_pred HhccchHHHHHHHHHHH-HHHHHHHHHHHhccHHHHHHHHhcc
Confidence 12355666666655544 4456666677788777666555443
No 42
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=94.46 E-value=0.85 Score=48.66 Aligned_cols=122 Identities=16% Similarity=0.148 Sum_probs=77.6
Q ss_pred HHhcCCCchHHHHHHHHHhhcccccccccc--hhhHHHHHHHHHHHHHHHHhhcCChhHHhhhhhhHHHHHHHHHH-HHH
Q 004361 620 FQKIPGGSPVLGYLAAGILIGPYGLSIIRH--VHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVL-VTA 696 (759)
Q Consensus 620 lrRL~gLP~VVGyILAGIILGPsgLGlI~~--~eiLe~LAEIGLIfLLFlaGLELDl~~LKr~~K~iLvLAilgVL-Lp~ 696 (759)
++++.+.|.+++ +++|+++...++.+ |. .+.++.++.....+-||..|+.++...+++.++......++-++ .|.
T Consensus 176 ~~~~~~nP~iia-~i~Gl~~~~~~i~l-P~~l~~~l~~lg~~~~plaLl~lG~~l~~~~~~~~~~~~~~~~~~klil~P~ 253 (321)
T TIGR00946 176 WKKLIKFPPLWA-PLLSVILSLVGFKM-PGLILKSISILSGATTPMALFSLGLALSPRKIKLGVRDAILALIVRFLVQPA 253 (321)
T ss_pred HHHHHhCCChHH-HHHHHHHHHHhhcC-cHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhccChHHHHHHHHHHHHHHHH
Confidence 444447788885 57788887655432 22 35688999999999999999999988887665555544444443 443
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHhhccHHHHHHHHHHcCCCCChhHHH
Q 004361 697 VVVGLVAHFVSGLPGPASIVIGNGLALSSTAVVLQVLQERGESTSRHGRA 746 (759)
Q Consensus 697 ~lVG~al~~lLGls~~~ALLLGaILSaTSpaVVv~VLkELGLLnSe~GRl 746 (759)
+.+++..+++++.. ......+++.+-+++...++.+.--.+.+....
T Consensus 254 --i~~~~~~~~~l~~~-~~~~~vl~aa~P~a~~~~i~A~~y~~~~~~aa~ 300 (321)
T TIGR00946 254 --VMAGISKLIGLRGL-ELSVAILQAALPGGAVAAVLATEYEVDVELAST 300 (321)
T ss_pred --HHHHHHHHhCCChH-HHHHHHHHHcCChhhHHHHHHHHhCCCHHHHHH
Confidence 33444556777643 334555666677777777775543234444433
No 43
>COG2985 Predicted permease [General function prediction only]
Probab=94.27 E-value=0.35 Score=55.73 Aligned_cols=104 Identities=26% Similarity=0.414 Sum_probs=60.4
Q ss_pred HHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHhhcCChhHHh---hhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 004361 629 VLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLS---SMKKYVFGLGSAQVLVTAVVVGLVAHF 705 (759)
Q Consensus 629 VVGyILAGIILGPsgLGlI~~~eiLe~LAEIGLIfLLFlaGLELDl~~LK---r~~K~iLvLAilgVLLp~~lVG~al~~ 705 (759)
+.|-+++|.+++.+++.+..+ .+.+ ++|++++.|.+|++--+..+- +.+++...++++-+ +....+.++++.
T Consensus 37 l~g~L~Vgl~l~~~~~~i~~~--~l~f--~lGL~LFVy~iGl~aGP~FFss~~~~Gl~~~~~alliv-i~~~~~a~~l~k 111 (544)
T COG2985 37 LFGVLFVGLFLGQYGFTINTD--MLHF--ELGLILFVYTIGLEAGPGFFSSFRKSGLNLNAFALLIV-IAALLLAWVLHK 111 (544)
T ss_pred hhhHhHHHHHhcccccccccc--hhhh--hhhhhHhhhhhhheecccHhHHHHHhhhHHHHHHHHHH-HHHHHHHHHHHh
Confidence 445677777777776655432 3333 999999999999999887654 44444444444332 222334445556
Q ss_pred HhCCChHHHHHHHHHH-hhccHHH---HHHHHHHcCCC
Q 004361 706 VSGLPGPASIVIGNGL-ALSSTAV---VLQVLQERGES 739 (759)
Q Consensus 706 lLGls~~~ALLLGaIL-SaTSpaV---Vv~VLkELGLL 739 (759)
+++++.. +..|... +.||+|. +..+|++++..
T Consensus 112 ~~~~~~~--~~~Gm~sGAlTsTP~L~aa~~~L~~lg~~ 147 (544)
T COG2985 112 LFGIDLG--LIAGMFSGALTSTPGLGAAQDILRELGAP 147 (544)
T ss_pred hcCCCHH--HhhhhhcccccCCchhHHHHHHHHhhccc
Confidence 6666543 2222221 2355444 56678887754
No 44
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=93.91 E-value=20 Score=43.72 Aligned_cols=32 Identities=9% Similarity=0.174 Sum_probs=15.5
Q ss_pred cHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 004361 150 TDELRELLMNAMKELEVAQLNSTMFEEKAQRI 181 (759)
Q Consensus 150 ~~~l~e~l~~a~~ele~a~~ns~~fe~kaq~i 181 (759)
++.|+.-+..+..+++.++-.-...+.+.+++
T Consensus 679 ~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l 710 (1179)
T TIGR02168 679 IEELEEKIEELEEKIAELEKALAELRKELEEL 710 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555444444444443333
No 45
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=93.82 E-value=8.7 Score=48.65 Aligned_cols=68 Identities=21% Similarity=0.278 Sum_probs=46.5
Q ss_pred CCCCcchhhHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHH-------HHHHHHHHhhhHHHHH
Q 004361 260 KSDGKEEDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEV-------AEKAQMNALKAEEDVA 327 (759)
Q Consensus 260 ~~d~~~~~~~~~~a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l~e~-------ae~aq~~a~kaeedva 327 (759)
+.|++.-++.|..+|++-...+..+.+.-.+|+.|-.+.++|+.+...-.+- |..|+..|..||.-.-
T Consensus 1590 ~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~ 1664 (1758)
T KOG0994|consen 1590 DRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLE 1664 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466777778888888888888888888888888888888888776554433 3344444555544433
No 46
>COG0679 Predicted permeases [General function prediction only]
Probab=93.80 E-value=7.1 Score=42.11 Aligned_cols=109 Identities=23% Similarity=0.263 Sum_probs=69.1
Q ss_pred cCCCchHHHHHHHHHhhcccccccccc-hhhHHHHHHHHHHHHHHHHhhcCChhHHhhhhhhHHHHHHH--HHHHHHHHH
Q 004361 623 IPGGSPVLGYLAAGILIGPYGLSIIRH-VHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSA--QVLVTAVVV 699 (759)
Q Consensus 623 L~gLP~VVGyILAGIILGPsgLGlI~~-~eiLe~LAEIGLIfLLFlaGLELDl~~LKr~~K~iLvLAil--gVLLp~~lV 699 (759)
+.+.|++++ .+.|+++...++.+-+. ...++.++.....+.|+..|+.++....++.....+..+.. -++.|. +
T Consensus 165 ~~~nP~i~a-~i~g~~~~~~~i~lP~~~~~~~~~l~~a~~pl~li~lG~~L~~~~~~~~~~~~~~~~~~~kll~~Pl--~ 241 (311)
T COG0679 165 LLTNPLIIA-LILGLLLNLLGISLPAPLDTAVDLLASAASPLALIALGLSLAFLKLKGSKPPIILIALSLKLLLAPL--V 241 (311)
T ss_pred HHhCcHHHH-HHHHHHHHHcCCCCcHHHHHHHHHHHHhhhhHHHHHHhhhcchhhhccccchhHHHHHHHHHHHHHH--H
Confidence 336788885 57888887655443221 35678899999999999999999996666665555545444 344453 3
Q ss_pred HHHHHHHhCCChHHHHHHHHHHhhccHHHHHHHHHH
Q 004361 700 GLVAHFVSGLPGPASIVIGNGLALSSTAVVLQVLQE 735 (759)
Q Consensus 700 G~al~~lLGls~~~ALLLGaILSaTSpaVVv~VLkE 735 (759)
+++..+++|++.... ....+++..-+++..-++.+
T Consensus 242 ~~~~~~~~~l~~~~~-~v~vl~~a~P~A~~~~v~a~ 276 (311)
T COG0679 242 ALLVAKLLGLSGLAL-QVLVLLSAMPTAVNAYVLAR 276 (311)
T ss_pred HHHHHHHcCCChHHH-HHHHHHhhCcHHhHHHHHHH
Confidence 455567788875544 33444444445555555543
No 47
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=93.78 E-value=0.87 Score=50.64 Aligned_cols=105 Identities=10% Similarity=0.102 Sum_probs=66.3
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHhhcccccccccch------hhHHHHHHHHHHHHHHHHhhc-CChhHHhhhh-hhHHH
Q 004361 615 IFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHV------HGTKAIAEFGVVFLLFNIGLE-LSVERLSSMK-KYVFG 686 (759)
Q Consensus 615 LLg~LlrRL~gLP~VVGyILAGIILGPsgLGlI~~~------eiLe~LAEIGLIfLLFlaGLE-LDl~~LKr~~-K~iLv 686 (759)
+++.+++.++++|+.+..|+.|+++-- +|++++. .+-+++...-...+|+.+|+- +|++.+.... ...+.
T Consensus 193 ~~g~l~~~~~~Ih~~v~mII~~vi~k~--~gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~~~vv 270 (347)
T TIGR00783 193 MAGGLLKSFPGIPAYAFMILIAAALKA--FGLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALSWQFVV 270 (347)
T ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhchhHhh
Confidence 344556666678999999999999986 4566542 223355555566677778986 8999988865 33333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCChHH-HHHHHHHHh
Q 004361 687 LGSAQVLVTAVVVGLVAHFVSGLPGPA-SIVIGNGLA 722 (759)
Q Consensus 687 LAilgVLLp~~lVG~al~~lLGls~~~-ALLLGaILS 722 (759)
+.+..++ ...+.++++++++|+-+.+ ++.-|.+.+
T Consensus 271 iiv~~Vl-g~ii~s~lvGKllG~YPiE~aItagLC~~ 306 (347)
T TIGR00783 271 ICLSVVV-AMILGGAFLGKLMGMYPVESAITAGLCNS 306 (347)
T ss_pred hHHHHHH-HHHHHHHHHHHHhCCChHHHHHHHhhhcc
Confidence 4444333 3345566777888875544 444454554
No 48
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=93.72 E-value=1.9 Score=47.60 Aligned_cols=93 Identities=14% Similarity=0.154 Sum_probs=62.1
Q ss_pred CCchHHHHHHHHHhhcccccccccc--hhhH----HHHHHHHHHHHHHHHhhcCChhHHhhhhhhHHHHHHHHHHHHHHH
Q 004361 625 GGSPVLGYLAAGILIGPYGLSIIRH--VHGT----KAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVV 698 (759)
Q Consensus 625 gLP~VVGyILAGIILGPsgLGlI~~--~eiL----e~LAEIGLIfLLFlaGLELDl~~LKr~~K~iLvLAilgVLLp~~l 698 (759)
++++++--|+.|+++|.......+. ...+ +.+-.+|+++ .|+++++..+...+...+.+....++.++ +
T Consensus 30 ~l~~~~~AillG~~l~n~~~~~~~~~~~~Gi~f~~k~lLr~gIVL----lG~~l~~~~i~~~G~~~l~~~~~~v~~~~-~ 104 (335)
T TIGR00698 30 ALSALFLAILLGMVAGNTIYPQRDEEKKRGVLFAKPFLLRIGITL----YGFRLTFPYIADVGPNEIVADTLILTSTF-F 104 (335)
T ss_pred CCcHHHHHHHHHHHHhccccccchhhccchHHHHHHHHHHHHHHH----HCccccHHHHHHhhHHHHHHHHHHHHHHH-H
Confidence 6788877889999999854211111 1122 4566777765 58999999999988877766665555554 3
Q ss_pred HHHHHH-HHhCCChHHHHHHHHHHh
Q 004361 699 VGLVAH-FVSGLPGPASIVIGNGLA 722 (759)
Q Consensus 699 VG~al~-~lLGls~~~ALLLGaILS 722 (759)
+++.+. ..+|++...++++|+..+
T Consensus 105 ~~~~~g~k~l~l~~~~~~Lia~Gts 129 (335)
T TIGR00698 105 LTVFLGSSRLKLDKQMSILLGAGSS 129 (335)
T ss_pred HHHHHHHHHhCCChhHHHHHHcchh
Confidence 444444 568888888877776544
No 49
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=93.62 E-value=1.2 Score=49.60 Aligned_cols=106 Identities=13% Similarity=0.095 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHh-cCCCchHHHHHHHHHhhcccc--ccccc-chhhHHHHHHHHHHHHHHHHhhcCChhHHhhhhhhHH
Q 004361 610 LLASVIFVPIFQK-IPGGSPVLGYLAAGILIGPYG--LSIIR-HVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVF 685 (759)
Q Consensus 610 LlaA~LLg~LlrR-L~gLP~VVGyILAGIILGPsg--LGlI~-~~eiLe~LAEIGLIfLLFlaGLELDl~~LKr~~K~iL 685 (759)
+.++.++..+++. ...+|..++-+++|+++.... ++..+ +...++.++.+.+-+++..+=..+++..+....-+.+
T Consensus 230 ~~~G~~i~~~l~~~~~~lP~f~~ami~g~ivrn~~~~~~~~~id~~~i~~I~~~sL~~fl~~almsl~l~~l~~~a~Pll 309 (368)
T PF03616_consen 230 IGLGYIISALLKKIGLTLPLFVGAMIVGIIVRNILDKTGKYKIDRKTIDRISGISLDLFLAMALMSLKLWVLADYALPLL 309 (368)
T ss_pred HHHHHHHHHHHHHcCcCCchHHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3444444444442 236899999999999987532 11111 4567889999999999998888999999999888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCChHHHH
Q 004361 686 GLGSAQVLVTAVVVGLVAHFVSGLPGPASI 715 (759)
Q Consensus 686 vLAilgVLLp~~lVG~al~~lLGls~~~AL 715 (759)
.+-+.+++++.+.+-++...++|.+|..+.
T Consensus 310 iil~~q~i~~~~f~~fv~fr~~gkdydaav 339 (368)
T PF03616_consen 310 IILAVQTILMVLFAYFVTFRVMGKDYDAAV 339 (368)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhCCChhHHH
Confidence 777777777655444455567788875554
No 50
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=93.33 E-value=0.95 Score=49.98 Aligned_cols=88 Identities=14% Similarity=0.135 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHHhc----------CCCchHH-HHHHHHHhhcccccccccc--hhhHHHHHHHHHHHHHHHHhh
Q 004361 604 FDVLWLLLASVIFVPIFQKI----------PGGSPVL-GYLAAGILIGPYGLSIIRH--VHGTKAIAEFGVVFLLFNIGL 670 (759)
Q Consensus 604 lqL~LILlaA~LLg~LlrRL----------~gLP~VV-GyILAGIILGPsgLGlI~~--~eiLe~LAEIGLIfLLFlaGL 670 (759)
....++..+..+++.+.+|- .++|.++ |++++-+ ++.. +.+++ ...+..++.+.+.+-|+..|+
T Consensus 219 ~Rvl~L~pv~~~la~~~~~~~~~~~~~~~~~~~P~FvlgFl~~~~-l~S~--~~lp~~~~~~l~~~~~~ll~~AmaaiGl 295 (335)
T TIGR00698 219 LRVMMLAPFLLILSIIYSRSDGISENESSKITIPWFAVLFIGVAI-FNSF--DLLPGEVVQALVPLDTFLLATAMAALGL 295 (335)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccCCCCCChHHHHHHHHHH-HHHh--hhCcHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444445555555555431 2457654 4444433 3332 23332 346788899999999999999
Q ss_pred cCChhHHhhhhhhHHHHHHHHHHH
Q 004361 671 ELSVERLSSMKKYVFGLGSAQVLV 694 (759)
Q Consensus 671 ELDl~~LKr~~K~iLvLAilgVLL 694 (759)
++|++.+++.+.+++.++.+..+.
T Consensus 296 ~t~~~~l~~~G~kp~~~g~i~~~~ 319 (335)
T TIGR00698 296 TTNVSAVKKAGVKPLFASYAGYLW 319 (335)
T ss_pred cCcHHHHHHcCchHHHHHHHHHHH
Confidence 999999999998888888776543
No 51
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=92.59 E-value=33 Score=42.27 Aligned_cols=47 Identities=23% Similarity=0.311 Sum_probs=25.8
Q ss_pred HHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 004361 269 LLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKA 315 (759)
Q Consensus 269 ~~~~a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l~e~ae~a 315 (759)
.+...++++...+..+..++.++..++.++..+++++.++.+..+..
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~l 341 (1164)
T TIGR02169 295 KIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEEL 341 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555556666666666666556655555555444433
No 52
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=92.14 E-value=1.2 Score=48.57 Aligned_cols=65 Identities=8% Similarity=-0.036 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhhcCChhHHhhhh---hhHHHHHHHHHH-HHHHHHHHHHHHH-hCCChHHHHHHHHHHhhccH
Q 004361 658 EFGVVFLLFNIGLELSVERLSSMK---KYVFGLGSAQVL-VTAVVVGLVAHFV-SGLPGPASIVIGNGLALSST 726 (759)
Q Consensus 658 EIGLIfLLFlaGLELDl~~LKr~~---K~iLvLAilgVL-Lp~~lVG~al~~l-LGls~~~ALLLGaILSaTSp 726 (759)
.++++++||..|++++++.+++.. |..+..-+.+++ .|. +++++..+ ++.+.. +.+|.++....|
T Consensus 46 ~~~l~~mmf~mgl~L~~~df~~~~~~pk~~~~~~~~qfvi~Pl--la~~l~~l~~~~~p~--l~~GliLv~~~P 115 (328)
T TIGR00832 46 AIGLILMMYPPLAKVDYSALGDVFKDPKGLILSLFINWIIGPF--LMFLLAWLFLRDLFE--YIAGLILLGLAR 115 (328)
T ss_pred HHHHHHHHHHhhhcCCHHHHHHHHcCchHHHHHHHHHHHHHHH--HHHHHHHHHcCCCHH--HHHHHHHHHhcc
Confidence 356678999999999999998743 333322233333 342 35544443 355432 555555544433
No 53
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=92.08 E-value=18 Score=43.89 Aligned_cols=43 Identities=12% Similarity=0.125 Sum_probs=31.4
Q ss_pred cchhhHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHH
Q 004361 264 KEEDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVD 306 (759)
Q Consensus 264 ~~~~~~~~~a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~ 306 (759)
+.++++=-.-|+-|+..++-+..-+.++.++|...++||....
T Consensus 512 ~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~ 554 (961)
T KOG4673|consen 512 RDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQAL 554 (961)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 3455555566777888888888888888888888888776543
No 54
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=92.02 E-value=2.4 Score=47.90 Aligned_cols=107 Identities=15% Similarity=0.174 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHH---HHHHhcCCCc-hHHHHHHH--HHhhcccccccc-cchhhHHHHHHHHHHHHHHHHhhcCChhHH
Q 004361 605 DVLWLLLASVIFV---PIFQKIPGGS-PVLGYLAA--GILIGPYGLSII-RHVHGTKAIAEFGVVFLLFNIGLELSVERL 677 (759)
Q Consensus 605 qL~LILlaA~LLg---~LlrRL~gLP-~VVGyILA--GIILGPsgLGlI-~~~eiLe~LAEIGLIfLLFlaGLELDl~~L 677 (759)
-.+++++++..+- .+++|+ .+| ||+|=+++ +++++|..+++. +-+. .+-.+-+.++.=.+|+.-+++.+
T Consensus 11 la~~lLllG~~Lr~kv~~Lqk~-~IPapViGGll~al~l~l~~~~~~~~~~fd~---~l~~~lm~~fFatigLga~~~~l 86 (398)
T TIGR00210 11 VAILVLLLGRYLVKKIKFLKSF-NIPEPVVGGVLVALALLLIYKIFGTEVNFDF---SLRDPLMLIFFTTIGLSANFKSL 86 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-CCchHHHHHHHHHHHHHHHHHhccEEEEcCh---hHHHHHHHHHHHHhhhcCChHHH
Confidence 3444455555543 567788 788 56665554 566678766542 1111 12233344444467778888888
Q ss_pred hhhhhhHHHHHHHHH---HHHHHHHHHHHHHHhCCChHHHHH
Q 004361 678 SSMKKYVFGLGSAQV---LVTAVVVGLVAHFVSGLPGPASIV 716 (759)
Q Consensus 678 Kr~~K~iLvLAilgV---LLp~~lVG~al~~lLGls~~~ALL 716 (759)
|+-+++.+....... ++-. ++|..+..++|+++...++
T Consensus 87 ~~gg~~l~~~~~~~~~l~~~Qn-~vGv~la~~~gl~P~~Gll 127 (398)
T TIGR00210 87 LKGGKPLLIFLATAVGFLVIQN-AVGIGMASLLGQAPLMGLL 127 (398)
T ss_pred HhChHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCCChHHHHH
Confidence 887777654443322 2222 3555555666776665554
No 55
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=91.54 E-value=11 Score=47.73 Aligned_cols=63 Identities=22% Similarity=0.279 Sum_probs=38.2
Q ss_pred hHHHHHhhhHHHHHHHHHhhHHHHHHh-------hhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 004361 268 GLLLAAENDIKECQANLANCETELRRL-------QSKKEELQKEVDRLNEVAEKAQMNALKAEEDVANIM 330 (759)
Q Consensus 268 ~~~~~a~~di~~~q~~l~~ce~el~~~-------q~~k~elqkev~~l~e~ae~aq~~a~kaeedvanim 330 (759)
.|+.-|-+||+..|..|.+-+++.+.. ..+..||-+.|..|.-++.+--.+|..||+.|-.+-
T Consensus 1584 ~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~ 1653 (1758)
T KOG0994|consen 1584 DAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAK 1653 (1758)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 566666677777777777776665544 445556666666666555555555555555544443
No 56
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=91.51 E-value=1.4 Score=48.45 Aligned_cols=83 Identities=18% Similarity=0.204 Sum_probs=60.1
Q ss_pred HHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHhhcCChhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCh
Q 004361 632 YLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHFVSGLPG 711 (759)
Q Consensus 632 yILAGIILGPsgLGlI~~~eiLe~LAEIGLIfLLFlaGLELDl~~LKr~~K~iLvLAilgVLLp~~lVG~al~~lLGls~ 711 (759)
-|+.|+++|....++ .+.+..-..++++|..|..|..+|+..+.+.+...+.++++.+++++ ++++.+..++|.+.
T Consensus 172 pILiGmilGNld~~~---~~~l~~Gi~f~I~f~~f~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~-~~~~~i~rllg~~~ 247 (312)
T PRK12460 172 PLVLGMILGNLDPDM---RKFLTKGGPLLIPFFAFALGAGINLSMLLQAGLAGILLGVLVTIVTG-FFNIFADRLVGGTG 247 (312)
T ss_pred HHHHHHHHhccchhh---HHHHhccceEeHHHHHHHhcCCeeHHHHHHhChHHHHHHHHHHHHHH-HHHHHHHHHhCCCh
Confidence 466778887732111 22333333348889999999999999999998888888888777774 46666677778887
Q ss_pred HHHHHHH
Q 004361 712 PASIVIG 718 (759)
Q Consensus 712 ~~ALLLG 718 (759)
..++++|
T Consensus 248 ~~g~li~ 254 (312)
T PRK12460 248 IAGAAAS 254 (312)
T ss_pred hHHHHHH
Confidence 7777777
No 57
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=91.49 E-value=26 Score=45.45 Aligned_cols=70 Identities=20% Similarity=0.239 Sum_probs=38.8
Q ss_pred ceeecCCCcc----ccccCCCCCccccccchhhhcccccCCCCCcHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 004361 110 LAFIDGNGRN----VEFSENGDGPEANSLGEEERETKEDAEPPTTDELRELLMNAMKELEVAQLNSTMFEEKAQRISEA 184 (759)
Q Consensus 110 l~~~~~~~~~----~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~l~~a~~ele~a~~ns~~fe~kaq~ise~ 184 (759)
=+||+.+||+ +.+. .....+.--|..-++.. -..-+++|.+-|.....+++...-....+++...++..-
T Consensus 705 ~~~v~~dG~~r~G~l~G~--~~k~~a~~IG~~aR~~~---R~~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e 778 (1353)
T TIGR02680 705 HTWIDVDGRFRLGVLRGA--WAKPAAEYIGAAARERA---RLRRIAELDARLAAVDDELAELARELRALGARQRALADE 778 (1353)
T ss_pred CeeECCCCceeeeeeecc--cCCcchhHhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999984 3311 22334444444433211 112367777777777777777666666666655555444
No 58
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=91.32 E-value=2.7 Score=41.48 Aligned_cols=101 Identities=15% Similarity=0.222 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCc---hHHHHHHHHHhhcccccccccchhhHH-----HHHHHHHHHHHHHHhhcC
Q 004361 601 ASLFDVLWLLLASVIFVPIFQKIPGGS---PVLGYLAAGILIGPYGLSIIRHVHGTK-----AIAEFGVVFLLFNIGLEL 672 (759)
Q Consensus 601 ~lLlqL~LILlaA~LLg~LlrRL~gLP---~VVGyILAGIILGPsgLGlI~~~eiLe-----~LAEIGLIfLLFlaGLEL 672 (759)
.++.++++++++..+...+.+-+ ++| +++|+++.=++|. ++.++ .++++ ++.++++.|+==.+|+=.
T Consensus 8 ~~l~ql~ill~~~~lGe~i~~ll-~lPiPGsViGMlLL~l~L~---~~~vk-~~~v~~~a~~LL~~m~LfFVPagVGim~ 82 (141)
T PRK04125 8 SFLHQAFIFAAIMLISNIIASFL-PIPMPASVIGLVLLFVLLC---TKVVK-LEQVESLGTALTNNIGFLFVPSGISVIN 82 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHHHHH---hCCcC-HHHHHHHHHHHHHHHHHHHhhhHhHHHH
Confidence 44667777766665544444444 544 4555544322222 22222 22222 233344444444566656
Q ss_pred ChhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004361 673 SVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHFV 706 (759)
Q Consensus 673 Dl~~LKr~~K~iLvLAilgVLLp~~lVG~al~~l 706 (759)
.++.++..+..++..-+++.+++++++|++..++
T Consensus 83 ~~~ll~~~~~~Il~~ivvSTllvl~vtg~v~~~l 116 (141)
T PRK04125 83 SLGVMSQYPVQIIGVIIVATILLLACTGLFSQFI 116 (141)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666555555555555555555544443
No 59
>TIGR00808 malonate_madM malonate transporter, MadM subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=91.15 E-value=1.3 Score=46.50 Aligned_cols=106 Identities=10% Similarity=0.133 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhc--CCCchHHHHHHHHHhhcccccccc----cchhhHHHHHHHHHH-------HHHHHHh
Q 004361 603 LFDVLWLLLASVIFVPIFQKI--PGGSPVLGYLAAGILIGPYGLSII----RHVHGTKAIAEFGVV-------FLLFNIG 669 (759)
Q Consensus 603 LlqL~LILlaA~LLg~LlrRL--~gLP~VVGyILAGIILGPsgLGlI----~~~eiLe~LAEIGLI-------fLLFlaG 669 (759)
+..+.++=+.-++-+++.+|+ -+++.----|+.|+++...+ |.. +....+..++-+|+. |-.-...
T Consensus 15 i~aFa~vG~~m~~s~~lS~~lT~Gr~hgSAIAI~lGL~lAy~g-G~~TgG~kGlaDi~lfsGiglmGGaMlRDfAIvaTA 93 (254)
T TIGR00808 15 ITAFAVVGLMMYVSHLLSKYLTKGKLHGSAIAITMGLVLAYVG-GVYTGGEKGLADIAIFGGFGLMGGAMLRDLAIVATA 93 (254)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHc-ccccCCccccchhhhhcchhhhhhHHHHHHHHHHHh
Confidence 333443333344444555554 13454434688899887543 111 111123333333332 2223567
Q ss_pred hcCChhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 004361 670 LELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHFVSGLP 710 (759)
Q Consensus 670 LELDl~~LKr~~K~iLvLAilgVLLp~~lVG~al~~lLGls 710 (759)
++.|++++||.+..-..--++++++|| ++|....|.||++
T Consensus 94 f~v~~~e~kkaG~~G~vsL~~G~v~~F-~~Ga~vA~afGY~ 133 (254)
T TIGR00808 94 FEVDVKEVKKAGKVGMVALLLGCVIPF-VIGAMVAWAFGYR 133 (254)
T ss_pred hcCcHHHHHHcchHHHHHHHHHHHHHH-HHHHHHHHHHcCC
Confidence 789999999988765555567778885 5788777888763
No 60
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=91.08 E-value=13 Score=42.93 Aligned_cols=92 Identities=17% Similarity=0.150 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHhchhHHHHHHHhhhHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCc
Q 004361 176 EKAQRISEAAIALKDEAANAWNNVNVTLDMVHEIVNEECIAKEAVHKATMALSLAEARLQVAIESLQDVKQEDDYPEGST 255 (759)
Q Consensus 176 ~kaq~ise~ai~l~d~a~~a~~~v~~~l~~iq~~~~~e~~akeav~~atmalslaearlq~a~e~~~~~~~~~~~~~~s~ 255 (759)
+.||+|++.-+ +++..--|++| +-.+++++.-|..-+.-||.|++.|..+|.+-+.....
T Consensus 215 edA~~ia~aLL---~~sE~~VN~Ls------------~rar~D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gv----- 274 (434)
T PRK15178 215 KQAEFFAQRIL---SFAEQHVNTVS------------ARMQKERILWLENDVKSAQENLGAARLELLKIQHIQKD----- 274 (434)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----
Confidence 46888888744 44444445555 44567888889999999999999999999886633321
Q ss_pred ccccCCCCcchhhHHHHHhhhHHHHHHHHHhhHHHHHHhh
Q 004361 256 EDDAKSDGKEEDGLLLAAENDIKECQANLANCETELRRLQ 295 (759)
Q Consensus 256 ~~~~~~d~~~~~~~~~~a~~di~~~q~~l~~ce~el~~~q 295 (759)
.+-+....+-..=|-..|..|++-+.||..++
T Consensus 275 --------lDP~~~a~~~~~lI~~Le~qLa~~~aeL~~L~ 306 (434)
T PRK15178 275 --------IDPKETITAIYQLIAGFETQLAEAKAEYAQLM 306 (434)
T ss_pred --------cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222233333445555666666666655553
No 61
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=90.99 E-value=17 Score=46.15 Aligned_cols=23 Identities=35% Similarity=0.560 Sum_probs=12.1
Q ss_pred ccccccccccccccc----ccccCCCc
Q 004361 42 RIVSKTRSTRNLSKS----ISYAGCSK 64 (759)
Q Consensus 42 ~~~~~~~~~~~~~~~----~~~~~~~~ 64 (759)
+.|-.++|.++|+-+ +-|.|++.
T Consensus 45 ~fVLG~~s~k~lRa~~~~DlIf~g~~~ 71 (1163)
T COG1196 45 RFVLGEQSAKNLRASKMSDLIFAGSGN 71 (1163)
T ss_pred HHHhCcchhhhhhccCCcceeeCCCCC
Confidence 344555566666533 35555555
No 62
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=90.87 E-value=0.076 Score=56.85 Aligned_cols=142 Identities=18% Similarity=0.222 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHhhcccccccccchhhHHHHH-HHHHHHHHHHHhhcCChhHHh---hhhhhHH
Q 004361 610 LLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIA-EFGVVFLLFNIGLELSVERLS---SMKKYVF 685 (759)
Q Consensus 610 LlaA~LLg~LlrRL~gLP~VVGyILAGIILGPsgLGlI~~~eiLe~LA-EIGLIfLLFlaGLELDl~~LK---r~~K~iL 685 (759)
+.+..+...+.+.+ |.++++|-.++|++++...... .-.+.++.+. .+...+++...|+++|++.+. ..+...+
T Consensus 219 l~~~~~~~~~a~~~-g~s~~l~af~~Gl~~~~~~~~~-~~~~~l~~~~~~~~~~lfF~~iG~~~~~~~l~~~~~~~~~~~ 296 (380)
T PF00999_consen 219 LALILLLYGLAEIL-GLSGILGAFIAGLILSNSPFAE-RLEEKLESFWYGFFIPLFFVFIGMSLDFSSLFNSPSVIILVL 296 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhhhccccccc-cccccceeeeeehccccccccc-hhhhcccchhhHHHhhHHhhhhcccccccccccchhhhhhHH
Confidence 33344445666667 8888888889999888321111 0122344555 777778888999999988874 2232222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhh-ccHH-HHHHHHHHcCCCCChhHHHHHHHHHHH
Q 004361 686 GLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLAL-SSTA-VVLQVLQERGESTSRHGRATFSVLLFQ 754 (759)
Q Consensus 686 vLAilgVLLp~~lVG~al~~lLGls~~~ALLLGaILSa-TSpa-VVv~VLkELGLLnSe~GRlaLSalVLq 754 (759)
.+.+..++.= ++.+++..+..|+++..++.+|..+.+ .... ++..+..+.|....+.-.+++.+.+++
T Consensus 297 ~~~~~~~~~k-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~la~~~~~~~~~~~~~~~~~~~~vl~t 366 (380)
T PF00999_consen 297 LLLIAILLGK-FIGVYLASRLFGIPWKEALFIGLGMLPRGEVSLALALIALNLGIISEQMFTIIIAAVLLT 366 (380)
T ss_dssp ---------------------------HHHHTTTTSS--HHHHHHHHHHHHH-------------------
T ss_pred HHHHHHHHhh-hceeehhhhhcccccchhHHHHHhhcCccHHHHHHHHHHHhcCCCCHHHHHHheeeeeeH
Confidence 2222211111 112233334457888888888876662 2222 233344555766666655555554443
No 63
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=90.54 E-value=20 Score=37.86 Aligned_cols=81 Identities=20% Similarity=0.171 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHhchhHHHHHHHhhhHhHHHHHHHHhHH------------HHHHHHHHHHHHHH------------HHH
Q 004361 175 EEKAQRISEAAIALKDEAANAWNNVNVTLDMVHEIVNEE------------CIAKEAVHKATMAL------------SLA 230 (759)
Q Consensus 175 e~kaq~ise~ai~l~d~a~~a~~~v~~~l~~iq~~~~~e------------~~akeav~~atmal------------sla 230 (759)
-++++.+...+-..+.+|..--.+|......|++++.+= ..-..+...|.++| ..|
T Consensus 72 ~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~l~ea~~mL~emr~r~f~~~~~~A 151 (264)
T PF06008_consen 72 SRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNENGDQLPSEDLQRALAEAQRMLEEMRKRDFTPQRQNA 151 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHHHHHHHhccchhHHHHH
Confidence 334444444444444455555555555666666666532 12223444454444 457
Q ss_pred HHHHHHHHHHhhhhccCCCCCCCCc
Q 004361 231 EARLQVAIESLQDVKQEDDYPEGST 255 (759)
Q Consensus 231 earlq~a~e~~~~~~~~~~~~~~s~ 255 (759)
+..+.-|..-|..++....+|...+
T Consensus 152 e~El~~A~~LL~~v~~~~~~~~~~~ 176 (264)
T PF06008_consen 152 EDELKEAEDLLSRVQKWFQKPQQEN 176 (264)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHhh
Confidence 7777777777777766666665544
No 64
>PRK04863 mukB cell division protein MukB; Provisional
Probab=90.53 E-value=19 Score=47.17 Aligned_cols=25 Identities=36% Similarity=0.243 Sum_probs=12.1
Q ss_pred HHHHHHhhhcccHHHHHHHHHHhhc
Q 004361 338 AFEIEATQRVNDAEIALQRAEKSLS 362 (759)
Q Consensus 338 a~e~ea~q~~ndaeial~ka~k~~~ 362 (759)
+-.-|.++.+++.|.-|..+++.++
T Consensus 449 aklee~e~qL~elE~kL~~lea~le 473 (1486)
T PRK04863 449 AKEQEATEELLSLEQKLSVAQAAHS 473 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555555555443
No 65
>PRK09903 putative transporter YfdV; Provisional
Probab=90.45 E-value=3.5 Score=44.12 Aligned_cols=118 Identities=14% Similarity=0.079 Sum_probs=70.0
Q ss_pred CCchHHHHHHHHHhhcccccccccc-hhhHHHHHHHHHHHHHHHHhhcCChhHHhhhhhhHHHHHHHHH-HHHHHHHHHH
Q 004361 625 GGSPVLGYLAAGILIGPYGLSIIRH-VHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQV-LVTAVVVGLV 702 (759)
Q Consensus 625 gLP~VVGyILAGIILGPsgLGlI~~-~eiLe~LAEIGLIfLLFlaGLELDl~~LKr~~K~iLvLAilgV-LLp~~lVG~a 702 (759)
+.|.+++ +++|+++.-.++.+... .+.+..++.....+-||..|+.+....++..++ .....+.-+ +.|.+ .++
T Consensus 172 ~nP~iia-~~~gl~~~l~~i~lP~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~~~~~~-~~~~~~~Kli~~P~i--~~~ 247 (314)
T PRK09903 172 KEPVVWA-PVLATILVLVGVKIPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFEFSAE-IAYNTFLKLILMPLA--LLL 247 (314)
T ss_pred hchHHHH-HHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHH-HHHHHHHHHHHHHHH--HHH
Confidence 5688886 57778776554432111 356789999999999999999887665543332 222222233 34532 233
Q ss_pred HHHHhCCChHHHHHHHHHHhhccHHHHHHHHHHcCCCCChhHHHH
Q 004361 703 AHFVSGLPGPASIVIGNGLALSSTAVVLQVLQERGESTSRHGRAT 747 (759)
Q Consensus 703 l~~lLGls~~~ALLLGaILSaTSpaVVv~VLkELGLLnSe~GRla 747 (759)
..+++|++. ...-+..+++.+-+++...++.+.=-.+.+....+
T Consensus 248 ~~~~~~l~~-~~~~v~vl~aa~P~a~~~~i~A~~y~~~~~~aa~~ 291 (314)
T PRK09903 248 VGMACHLNS-EHLQMMVLAGALPPAFSGIIIASRFNVYTRTGTAS 291 (314)
T ss_pred HHHHcCCCc-HHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHH
Confidence 334567763 33345666777778888887755432445544333
No 66
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=90.10 E-value=6.5 Score=44.72 Aligned_cols=121 Identities=17% Similarity=0.193 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHHhc-CCCchHHHHHHHHHhhcccc--ccccc-chhhHHHHHHHHHHHHHHHHhhcCChhHHhhhhhh
Q 004361 608 WLLLASVIFVPIFQKI-PGGSPVLGYLAAGILIGPYG--LSIIR-HVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKY 683 (759)
Q Consensus 608 LILlaA~LLg~LlrRL-~gLP~VVGyILAGIILGPsg--LGlI~-~~eiLe~LAEIGLIfLLFlaGLELDl~~LKr~~K~ 683 (759)
+.+.++.++..+++.. ..+|..++-+++|+++-... ++... ..+.+..++++.+-+++=.+=+.+.+-.+-..+-+
T Consensus 229 i~~~vG~~i~~~l~~~~~~lP~fv~~lfvgiIvrni~~~~~~~~v~~~~v~~ig~vsL~lflamALmSlkLweL~~l~lp 308 (404)
T COG0786 229 ICLAVGKIINQLLKSLGLALPLFVMCLFVGVILRNILDLLKKYRVFRRAVDVIGNVSLSLFLAMALMSLKLWELADLALP 308 (404)
T ss_pred HHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3344455555555532 25899999999999987531 12111 34567888888888877777677777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHH----HHHHHhhccHHH
Q 004361 684 VFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIV----IGNGLALSSTAV 728 (759)
Q Consensus 684 iLvLAilgVLLp~~lVG~al~~lLGls~~~ALL----LGaILSaTSpaV 728 (759)
.+++-.+++++..+..-++.+.++|-++..+.+ .|..+.+|-+++
T Consensus 309 l~viL~vQ~i~m~lfa~fvtfr~mG~~YdAaV~~~G~~G~gLGATPtAi 357 (404)
T COG0786 309 LLVILAVQTIVMALFAIFVTFRLMGKNYDAAVLAAGHCGFGLGATPTAI 357 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcchhHHHHhcccccCccCCcHHHH
Confidence 777777777766544444555677888766655 333344444444
No 67
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=90.01 E-value=49 Score=39.42 Aligned_cols=54 Identities=19% Similarity=0.162 Sum_probs=44.6
Q ss_pred CCCcchhhHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 004361 261 SDGKEEDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEK 314 (759)
Q Consensus 261 ~d~~~~~~~~~~a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l~e~ae~ 314 (759)
.++.+-.+.+..++.+|.+|++.+..+..++.++..+++++++++.++.+.-++
T Consensus 421 e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 474 (650)
T TIGR03185 421 EQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEKTKQKIN 474 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355666678888899999999999999999999999999999999887666544
No 68
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=89.84 E-value=26 Score=44.57 Aligned_cols=59 Identities=24% Similarity=0.345 Sum_probs=38.5
Q ss_pred hHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 004361 268 GLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDV 326 (759)
Q Consensus 268 ~~~~~a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l~e~ae~aq~~a~kaeedv 326 (759)
+.+..+++.+..++.++.+|+.+++.++.+.+++++++..++..-...+......+...
T Consensus 835 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l 893 (1163)
T COG1196 835 EEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEEL 893 (1163)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666677777777777777777777777777777776666655544444433
No 69
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=89.59 E-value=14 Score=43.13 Aligned_cols=114 Identities=28% Similarity=0.267 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCcccccCCCCcchhhHHHHHhhhHHHHHHHHHhhHHHHHH-
Q 004361 215 IAKEAVHKATMALSLAEARLQVAIESLQDVKQEDDYPEGSTEDDAKSDGKEEDGLLLAAENDIKECQANLANCETELRR- 293 (759)
Q Consensus 215 ~akeav~~atmalslaearlq~a~e~~~~~~~~~~~~~~s~~~~~~~d~~~~~~~~~~a~~di~~~q~~l~~ce~el~~- 293 (759)
.+|+-+..++..+.-+|.||+.+.+-++++| .+-..|-.+|+.. .+++..-+.
T Consensus 397 ~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaK----------------------asEa~Ala~ik~l----~e~~~~~~~~ 450 (522)
T PF05701_consen 397 KAKEEAEQTKAAIKTAEERLEAALKEAEAAK----------------------ASEALALAEIKAL----SESESSSRAS 450 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHh----hccccccccc
Confidence 4666677788999999999999999888876 2233344555432 222222211
Q ss_pred ---hhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHH
Q 004361 294 ---LQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVANIMLLAEQAVAFEIEATQRVNDAEIALQRA 357 (759)
Q Consensus 294 ---~q~~k~elqkev~~l~e~ae~aq~~a~kaeedvanim~laeqava~e~ea~q~~ndaeial~ka 357 (759)
-.+.+.=-..|-.-|.- +|+..-..|+.-|+.+|.--|.|=+-|+|...|+..+.-.+...
T Consensus 451 ~~~~~~~Vtls~eEy~~L~~---ka~e~ee~a~kkva~A~aqve~ak~se~e~l~kle~~~~e~~~~ 514 (522)
T PF05701_consen 451 DSESSSKVTLSLEEYESLSK---KAEEAEELAEKKVAAAMAQVEAAKASEKEILEKLEEAMKEIEER 514 (522)
T ss_pred ccCCCCCeeecHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222223344444444 44444456778899999999999999999988887765554433
No 70
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=89.52 E-value=27 Score=36.55 Aligned_cols=168 Identities=20% Similarity=0.224 Sum_probs=88.5
Q ss_pred cHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhchhHHHHHHHhhhHhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 004361 150 TDELRELLMNAMKELEVAQLNSTMFEEKAQRISEAAIALKDEAANAWNNVNVTLDMVHEIVNEECIAKEAVHKATMALSL 229 (759)
Q Consensus 150 ~~~l~e~l~~a~~ele~a~~ns~~fe~kaq~ise~ai~l~d~a~~a~~~v~~~l~~iq~~~~~e~~akeav~~atmalsl 229 (759)
|+....=|..+.+.++...--...+|.+.+...+..-.|.++...|......+-....++..+=.+...-+..|--.+..
T Consensus 59 L~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~ 138 (237)
T PF00261_consen 59 LEEATEKLEEAEKRADESERARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEA 138 (237)
T ss_dssp CCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55555666666666666666667777777777777777777766666666655544444444433333333444444444
Q ss_pred HHHHHHHHHHHhhhhccCCCCCCCCcccccCCCCcchhhHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHH
Q 004361 230 AEARLQVAIESLQDVKQEDDYPEGSTEDDAKSDGKEEDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLN 309 (759)
Q Consensus 230 aearlq~a~e~~~~~~~~~~~~~~s~~~~~~~d~~~~~~~~~~a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l~ 309 (759)
+|.+...-.+-|..+......++.+.+ +-.+-...-.+.|+..+..|.+-+.+......+...|++++++|.
T Consensus 139 ~E~ki~eLE~el~~~~~~lk~lE~~~~--------~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le 210 (237)
T PF00261_consen 139 AESKIKELEEELKSVGNNLKSLEASEE--------KASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLE 210 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hchhHHHHHHHHHHHHHHHHHhhhhhh--------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444443333222222221110 001122334445666666666666666666666666666666666
Q ss_pred HHHHHHHHHHhhhHHH
Q 004361 310 EVAEKAQMNALKAEED 325 (759)
Q Consensus 310 e~ae~aq~~a~kaeed 325 (759)
+-....+..-.+...+
T Consensus 211 ~eL~~~k~~~~~~~~e 226 (237)
T PF00261_consen 211 DELEKEKEKYKKVQEE 226 (237)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6555555444443333
No 71
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=89.38 E-value=3.6 Score=45.85 Aligned_cols=131 Identities=21% Similarity=0.224 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHH---HHHHhcCCCc-hHHHHHHHHHhhccc--ccccccchhhHHHHHHHHHHHHHHHHhhcCChhHH
Q 004361 604 FDVLWLLLASVIFV---PIFQKIPGGS-PVLGYLAAGILIGPY--GLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERL 677 (759)
Q Consensus 604 lqL~LILlaA~LLg---~LlrRL~gLP-~VVGyILAGIILGPs--gLGlI~~~eiLe~LAEIGLIfLLFlaGLELDl~~L 677 (759)
.-..++++++.++- .+++|+ .+| +++|=++ |.++.+. ..+.++-. .-..+.++-++.++=.+|+..+++.+
T Consensus 10 ~la~ilLliG~~Lr~ki~~lqk~-~IPasvIgGli-~~il~~~l~~~~~~~~~-f~~~l~~~lm~~fF~~igL~~~~~~l 86 (368)
T PF03616_consen 10 ALASILLLIGKFLRAKIPFLQKL-FIPASVIGGLI-FAILPLILGGFGGISIS-FDTSLQDFLMIIFFTTIGLGASLKLL 86 (368)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHc-cCCchHHHHHH-HHHHHHHHHhcCceEEE-echhHHHHHHHHHHHHHhhccchhhH
Confidence 33444555555553 677887 787 4555444 3333321 12222111 11123344444444467888899999
Q ss_pred hhhhhhHHHHHHHHHHHHH--HHHHHHHHHHhCCChHHHHHHHHHHhh----ccHHHHHHHHHHc-CC
Q 004361 678 SSMKKYVFGLGSAQVLVTA--VVVGLVAHFVSGLPGPASIVIGNGLAL----SSTAVVLQVLQER-GE 738 (759)
Q Consensus 678 Kr~~K~iLvLAilgVLLp~--~lVG~al~~lLGls~~~ALLLGaILSa----TSpaVVv~VLkEL-GL 738 (759)
++-++.........+++.+ .++|+.+..++|+++...++.|. ++. -..+..-+++++. |.
T Consensus 87 kkgg~~~~~~~~~~~~~~~~Q~~vG~~la~l~gl~p~~Gll~Gs-i~f~GGhGTAaa~g~~fe~~~G~ 153 (368)
T PF03616_consen 87 KKGGKAVLIFLLIAIILAFLQNIVGLGLAKLLGLDPLFGLLAGS-IGFTGGHGTAAAFGPTFEELYGW 153 (368)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHhcc-ccccCCccHHHHHHHHHHHhcCh
Confidence 8877765543333222111 23566556667887665554442 122 1234455778777 76
No 72
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=89.00 E-value=6.6 Score=44.87 Aligned_cols=107 Identities=14% Similarity=0.109 Sum_probs=71.2
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHhhcccccccccc------hhhHHHHHHHHHHHHHHHHhhc-CChhHHhhhhhhHHH
Q 004361 614 VIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRH------VHGTKAIAEFGVVFLLFNIGLE-LSVERLSSMKKYVFG 686 (759)
Q Consensus 614 ~LLg~LlrRL~gLP~VVGyILAGIILGPsgLGlI~~------~eiLe~LAEIGLIfLLFlaGLE-LDl~~LKr~~K~iLv 686 (759)
++++.+++++.++|..+.+|+.=+++-- +|++|+ ..+-+++..--...+|+.+|+. +|++.+.........
T Consensus 259 y~~G~ll~~~i~ih~~a~mIi~~~i~K~--~~lvP~~~e~~a~~~~~f~~~~lt~~lLvgiGv~~~~l~~l~~a~t~~~v 336 (414)
T PF03390_consen 259 YILGVLLSKLIGIHAYAWMIILVAIVKA--FGLVPESLEEGAKQWYKFFSKNLTWPLLVGIGVAYTDLNDLIAAFTPQYV 336 (414)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcHHHHHHHhCHHHH
Confidence 4566777776688988877777666654 456654 2456788888888999999998 999999875544333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCChH-HHHHHHHHHh
Q 004361 687 LGSAQVLVTAVVVGLVAHFVSGLPGP-ASIVIGNGLA 722 (759)
Q Consensus 687 LAilgVLLp~~lVG~al~~lLGls~~-~ALLLGaILS 722 (759)
+-++.+++...+.+++.++++|+-+. .++.-|.+.+
T Consensus 337 v~~~~~Vl~~~~~a~~vG~l~g~YPvEsAItaGLC~a 373 (414)
T PF03390_consen 337 VIVLATVLGAVIGAFLVGKLVGFYPVESAITAGLCMA 373 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhhccc
Confidence 33333344445556677788887554 4454443554
No 73
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=88.99 E-value=67 Score=39.64 Aligned_cols=7 Identities=29% Similarity=0.638 Sum_probs=2.9
Q ss_pred HHHHHHH
Q 004361 729 VLQVLQE 735 (759)
Q Consensus 729 Vv~VLkE 735 (759)
+..+|.+
T Consensus 1117 ~~~~l~~ 1123 (1164)
T TIGR02169 1117 VAKLIRE 1123 (1164)
T ss_pred HHHHHHH
Confidence 3344443
No 74
>PRK01658 holin-like protein; Validated
Probab=88.86 E-value=7.2 Score=37.52 Aligned_cols=99 Identities=17% Similarity=0.254 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCc---hHHHHHHHHHhhcccccccccchhhHH-----HHHHHHHHHHHHHHhhcCC
Q 004361 602 SLFDVLWLLLASVIFVPIFQKIPGGS---PVLGYLAAGILIGPYGLSIIRHVHGTK-----AIAEFGVVFLLFNIGLELS 673 (759)
Q Consensus 602 lLlqL~LILlaA~LLg~LlrRL~gLP---~VVGyILAGIILGPsgLGlI~~~eiLe-----~LAEIGLIfLLFlaGLELD 673 (759)
.+.++++++.+..+...+.+.+ ++| +++|+++.=+++. ++.++ .++++ ++.++++.|+==.+|+=-.
T Consensus 6 ~l~~l~il~~~~~~G~~i~~~l-~lpiPGsViGmlLL~~~L~---~~~ik-~~~v~~~a~~Ll~~m~llFVPa~VGi~~~ 80 (122)
T PRK01658 6 LLVQIALLYVFALVGTWIQEQL-HLPIPGSIIGIFLLLLLLS---FKILK-LKWIELGAETLLAELPLFFIPSAVGVMNY 80 (122)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHH---hCCcC-HHHHHHHHHHHHHHHHHHHHHhhhHHHHh
Confidence 4567666665555544444444 544 4555544222221 22222 12222 3344444444445666666
Q ss_pred hhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 004361 674 VERLSSMKKYVFGLGSAQVLVTAVVVGLVAHF 705 (759)
Q Consensus 674 l~~LKr~~K~iLvLAilgVLLp~~lVG~al~~ 705 (759)
++.+++++..++..-+.+.+++++++|+...+
T Consensus 81 ~~ll~~~~~~il~~ivvsT~l~l~vtg~~~~~ 112 (122)
T PRK01658 81 GDFLSSKGISLFLVVVISTFVVMIVTGYLTQL 112 (122)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677766666655555555555555554443
No 75
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=88.83 E-value=8.2 Score=43.92 Aligned_cols=121 Identities=14% Similarity=0.108 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHhcCCCchHH-HHHHHHHhhcccccccccc------hhhHHHHHHHHHHHHHHHHhhc-
Q 004361 601 ASLFDVLWLLLAS-VIFVPIFQKIPGGSPVL-GYLAAGILIGPYGLSIIRH------VHGTKAIAEFGVVFLLFNIGLE- 671 (759)
Q Consensus 601 ~lLlqL~LILlaA-~LLg~LlrRL~gLP~VV-GyILAGIILGPsgLGlI~~------~eiLe~LAEIGLIfLLFlaGLE- 671 (759)
.-++-.+.++.++ ++++.++.++.++|.-+ .+++.-.++-- .+.+++ ..+-++++.=-.-.+||.+|+-
T Consensus 263 ~~~~g~G~llA~~lf~~g~il~kf~~~P~~va~MIil~a~lk~--~nlvp~~i~~GA~~l~~F~sk~~t~~Lm~giGv~y 340 (438)
T COG3493 263 LKLMGAGMLLACTLFMAGGILGKFIGLPGPVAFMIILVAILKA--ANLVPKEIEEGAKQLSQFFSKNLTWPLMAGIGVAY 340 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHHHHhhHHHHHHhhhhcc
Confidence 3445556655555 34567777775688554 34444444443 344443 2345677777777899999997
Q ss_pred CChhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCh-HHHHHHHHHHhh
Q 004361 672 LSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHFVSGLPG-PASIVIGNGLAL 723 (759)
Q Consensus 672 LDl~~LKr~~K~iLvLAilgVLLp~~lVG~al~~lLGls~-~~ALLLGaILSa 723 (759)
+|++.+-.......++-.+.+++.+++.+++.++++|+-+ ..++.-|++++.
T Consensus 341 tdl~ev~~alt~~~vii~~~vVl~~i~~~~f~grl~~~YPVEaAI~aglC~a~ 393 (438)
T COG3493 341 TDLNEVAAALTWQNVIIALSVVLGAILGGAFVGRLMGFYPVEAAITAGLCMAN 393 (438)
T ss_pred ccHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHhHHhcC
Confidence 9999988755544455555666666777788888899754 455555577764
No 76
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=88.23 E-value=17 Score=38.72 Aligned_cols=152 Identities=18% Similarity=0.296 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhchhHHHHHHHhhhHhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 004361 151 DELRELLMNAMKELEVAQLNSTMFEEKAQRISEAAIALKDEAANAWNNVNVTLDMVHEIVNEECIAKEAVHKATMALSLA 230 (759)
Q Consensus 151 ~~l~e~l~~a~~ele~a~~ns~~fe~kaq~ise~ai~l~d~a~~a~~~v~~~l~~iq~~~~~e~~akeav~~atmalsla 230 (759)
..+..-+.+.+++++.+++.++-+|.+.+..-+--=+++..-..--.++.. .|+.-+..|..+ .....++-.|.
T Consensus 99 ~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~---~~~~~~~~e~~~---~~~~dL~~~L~ 172 (312)
T PF00038_consen 99 KDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELRE---QIQSSVTVEVDQ---FRSSDLSAALR 172 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTST---T-------------------HHHHHH
T ss_pred HHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhh---ccccccceeecc---cccccchhhhh
Confidence 445556777788888899999999888887776555554433221111111 111111111111 11222333333
Q ss_pred HHHHHHHHHHhhhhccCCC-CCCCCcccccCCCCcchhhHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHH
Q 004361 231 EARLQVAIESLQDVKQEDD-YPEGSTEDDAKSDGKEEDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLN 309 (759)
Q Consensus 231 earlq~a~e~~~~~~~~~~-~~~~s~~~~~~~d~~~~~~~~~~a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l~ 309 (759)
+.|-+-...+-.. +...+ .++.-. .+-..-......++..+++|+++++..+.....+|..++.++..|.+.+..|.
T Consensus 173 eiR~~ye~~~~~~-~~e~e~~y~~k~-~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le 250 (312)
T PF00038_consen 173 EIRAQYEEIAQKN-REELEEWYQSKL-EELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELE 250 (312)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhh-hhhhhhhccccc-ccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHH
Confidence 3333322111111 00000 000000 00000111245788899999999999999999999999999999999998775
Q ss_pred H
Q 004361 310 E 310 (759)
Q Consensus 310 e 310 (759)
.
T Consensus 251 ~ 251 (312)
T PF00038_consen 251 Q 251 (312)
T ss_dssp H
T ss_pred H
Confidence 3
No 77
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=88.19 E-value=53 Score=38.39 Aligned_cols=56 Identities=29% Similarity=0.348 Sum_probs=25.8
Q ss_pred HHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 004361 282 ANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVANIMLLAEQAVAFEIEATQ 345 (759)
Q Consensus 282 ~~l~~ce~el~~~q~~k~elqkev~~l~e~ae~aq~~a~kaeedvanim~laeqava~e~ea~q 345 (759)
..|...-.|.+.........+.|+.++.+-++.+.....-+|... +|+-.|+||++
T Consensus 372 ~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL--------~aa~ke~eaaK 427 (522)
T PF05701_consen 372 KALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERL--------EAALKEAEAAK 427 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHH
Confidence 333333334444444444444444444444444444444444333 34666677655
No 78
>PRK01821 hypothetical protein; Provisional
Probab=88.08 E-value=7.4 Score=38.11 Aligned_cols=99 Identities=18% Similarity=0.207 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCc---hHHHHHHHHHhhcccccccccchhhHH-----HHHHHHHHHHHHHHhhcCC
Q 004361 602 SLFDVLWLLLASVIFVPIFQKIPGGS---PVLGYLAAGILIGPYGLSIIRHVHGTK-----AIAEFGVVFLLFNIGLELS 673 (759)
Q Consensus 602 lLlqL~LILlaA~LLg~LlrRL~gLP---~VVGyILAGIILGPsgLGlI~~~eiLe-----~LAEIGLIfLLFlaGLELD 673 (759)
.+.++++++.+..+...+.+-+ ++| +++|+++.=+.+. ++.++ .++++ ++.++++.|+==.+|+=-.
T Consensus 11 ~l~~l~ill~~~~~Ge~i~~~l-~lpiPGsViGmlLLf~~L~---~~~vk-~~~v~~~a~~LL~~m~LfFVPa~VGim~~ 85 (133)
T PRK01821 11 YLRAFVLIYACLYAGIFIASLL-PITIPGSIIGMLILFVLLA---LQILP-AKWVKPGCSLLIRYMALLFVPIGVGVMQY 85 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHHHHH---hCCcC-HHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3556666655555444444444 543 4555444222221 12222 22222 2333343333335565555
Q ss_pred hhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 004361 674 VERLSSMKKYVFGLGSAQVLVTAVVVGLVAHF 705 (759)
Q Consensus 674 l~~LKr~~K~iLvLAilgVLLp~~lVG~al~~ 705 (759)
++.++..+..++..-+++.+++++++|+...+
T Consensus 86 ~~ll~~~~~~il~~ivvST~lvl~vtg~~~~~ 117 (133)
T PRK01821 86 YDLLRAQFGPIVVSCIVSTLVVLLVVGWSSHY 117 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666655555555555554444444433
No 79
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=87.86 E-value=3.9 Score=49.74 Aligned_cols=93 Identities=13% Similarity=0.080 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHhhcCChhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhccH--HHHHHHHH
Q 004361 657 AEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSST--AVVLQVLQ 734 (759)
Q Consensus 657 AEIGLIfLLFlaGLELDl~~LKr~~K~iLvLAilgVLLp~~lVG~al~~lLGls~~~ALLLGaILSaTSp--aVVv~VLk 734 (759)
..+.+.+.....|++.|+..+.+ +.....+.... .+.-++.+++..+++++|+..++.+|.+++.=.. -++..+-.
T Consensus 312 ~~~llPl~~~~~G~k~di~~i~~-~~~~~~~i~~~-~~~K~l~t~~~sl~~k~p~~~~l~l~~lm~~kgl~el~~~~~~~ 389 (769)
T KOG1650|consen 312 SGLLLPLYFAISGLKTDISRINK-WGALIRTILIF-GAVKLLSTLGTSLYCKLPLRDSLALGLLMSTKGLVELIVLNTGL 389 (769)
T ss_pred HHHHHHHHHHhhccceeHHHHHH-HHHHHHHHHHH-HHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 45666677778899999998887 32222221111 2222333444455778999999998888875432 23444555
Q ss_pred HcCCCCChh-HHHHHHHH
Q 004361 735 ERGESTSRH-GRATFSVL 751 (759)
Q Consensus 735 ELGLLnSe~-GRlaLSal 751 (759)
+.|.++++. +-+++.+.
T Consensus 390 ~~~~~~~~~f~~~vl~al 407 (769)
T KOG1650|consen 390 DRKILSDEGFTVMVLMAL 407 (769)
T ss_pred hcCCcccchHHHHHHHHH
Confidence 666665554 33333333
No 80
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=87.70 E-value=8.5 Score=42.60 Aligned_cols=117 Identities=17% Similarity=0.186 Sum_probs=77.1
Q ss_pred HHHHHHHHhhccccccccc---c-hhhHHHHHHHHHHHHHHHHhhcCChhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 004361 630 LGYLAAGILIGPYGLSIIR---H-VHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHF 705 (759)
Q Consensus 630 VGyILAGIILGPsgLGlI~---~-~eiLe~LAEIGLIfLLFlaGLELDl~~LKr~~K~iLvLAilgVLLp~~lVG~al~~ 705 (759)
+.-++.|.++..+..+... . ...+..=+..-+.+++|..|-.+|++...+.-|+...+-+.-+++.+ ++|++...
T Consensus 16 vVPLllgalinTf~P~~l~~iG~fT~al~~G~~~iig~~l~~~Ga~I~~k~~~~~lkkg~~ll~~K~~~~~-~lgl~~~~ 94 (314)
T PF03812_consen 16 VVPLLLGALINTFFPNALEIIGGFTTALFTGANPIIGVFLFCMGAQIDLKSAGKVLKKGGVLLLVKFIIGA-LLGLLVGK 94 (314)
T ss_pred HHHHHHHHHHHhcCCChhhccCcHHHHHHcchHHHHHHHHHHhccccchhhhhHHHHhhhHHHHHHHHHHH-HHHHHHHH
Confidence 3356778877755444332 1 12122223445668899999999999988776666666666666664 46777767
Q ss_pred HhCCC--------hHHHHHHHHHHhhccHHHHHHHHHHcCCCCChhHHHHH
Q 004361 706 VSGLP--------GPASIVIGNGLALSSTAVVLQVLQERGESTSRHGRATF 748 (759)
Q Consensus 706 lLGls--------~~~ALLLGaILSaTSpaVVv~VLkELGLLnSe~GRlaL 748 (759)
++|.. ....+.+-++++.+..++-..+..++|- +++.|-..+
T Consensus 95 ~fg~~Gi~~g~f~GlS~LAiiaa~~~~NggLY~aL~~~yGd-~~D~gA~~i 144 (314)
T PF03812_consen 95 FFGPEGIQSGFFLGLSALAIIAAMTNSNGGLYLALMGQYGD-EEDVGAFSI 144 (314)
T ss_pred HcCccccccccccchHHHHHHHHHhcCCHHHHHHHHHHhCC-HHHhHHHHH
Confidence 76543 2455667777888889999999999995 555555433
No 81
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=87.43 E-value=5.2 Score=43.49 Aligned_cols=27 Identities=30% Similarity=0.625 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHhhcCChhHHhhh
Q 004361 654 KAIAEFGVVFLLFNIGLELSVERLSSM 680 (759)
Q Consensus 654 e~LAEIGLIfLLFlaGLELDl~~LKr~ 680 (759)
+....+++..++|..|+.++.+.+++.
T Consensus 30 ~~~~~~~v~~iFf~~Gl~L~~~~l~~~ 56 (313)
T PF13593_consen 30 EYVIKYGVALIFFISGLSLPTEELKAA 56 (313)
T ss_pred hhhHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 356678888899999999999999874
No 82
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=86.60 E-value=52 Score=42.22 Aligned_cols=24 Identities=8% Similarity=0.210 Sum_probs=12.8
Q ss_pred hHHHHHhhhHHHHHHHHHhhHHHH
Q 004361 268 GLLLAAENDIKECQANLANCETEL 291 (759)
Q Consensus 268 ~~~~~a~~di~~~q~~l~~ce~el 291 (759)
.-+....+.|..|.+++++|...+
T Consensus 907 ~kv~~~~~~~~~l~~~i~k~~~~i 930 (1293)
T KOG0996|consen 907 DKVEKINEQLDKLEADIAKLTVAI 930 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHH
Confidence 444555555555555555555533
No 83
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=86.05 E-value=12 Score=42.06 Aligned_cols=104 Identities=14% Similarity=0.092 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhcccc--c-cc-ccchhhHHHHHHHHHHHHHHHHhhcCChhHHhhhh
Q 004361 606 VLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYG--L-SI-IRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMK 681 (759)
Q Consensus 606 L~LILlaA~LLg~LlrRL~gLP~VVGyILAGIILGPsg--L-Gl-I~~~eiLe~LAEIGLIfLLFlaGLELDl~~LKr~~ 681 (759)
+.+++.++.+.+.+.+++ ++|.- ++++.+++|-.+ . +. +.-+.++. .++..++--.+|.++|-..++...
T Consensus 190 ~~~l~~~~~~~g~l~~~l-r~Pa~--~ll~~l~l~a~v~~~~~~~~~lP~wl~---~va~~~iG~~IG~~f~~~~l~~~~ 263 (352)
T COG3180 190 LLLLILAALLGGLLGKLL-RFPAP--TLLGPLLLGAIVHFGGGITIQLPAWLL---AVAQALIGALIGSRFDRSILREAK 263 (352)
T ss_pred HHHHHHHHHHHHHHHHHH-cCCcH--HHHHHHHHHHHhhcccceeeeCCHHHH---HHHHHHHHHHHcccccHHHHHHhH
Confidence 555566667777777777 88753 344444444321 1 11 12244443 456667777999999998887766
Q ss_pred hhHH--HHHHHHHHHHHHHHHHHHHHHhCCChHHHH
Q 004361 682 KYVF--GLGSAQVLVTAVVVGLVAHFVSGLPGPASI 715 (759)
Q Consensus 682 K~iL--vLAilgVLLp~~lVG~al~~lLGls~~~AL 715 (759)
|... .+.++..++-.+.++.+++++.|+++..++
T Consensus 264 r~~~~~~v~ii~l~~~~~~~a~ll~~~~~i~~~ta~ 299 (352)
T COG3180 264 RLLPAILVSIIALMAIAAGMAGLLSWLTGIDLNTAY 299 (352)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 5432 222222222223345555666677765544
No 84
>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=86.02 E-value=6.4 Score=45.28 Aligned_cols=101 Identities=15% Similarity=0.099 Sum_probs=61.0
Q ss_pred hHHHHHHHHHHHHHHHHhhcCChhHHhh----hhhh--HHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhcc
Q 004361 652 GTKAIAEFGVVFLLFNIGLELSVERLSS----MKKY--VFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSS 725 (759)
Q Consensus 652 iLe~LAEIGLIfLLFlaGLELDl~~LKr----~~K~--iLvLAilgVLLp~~lVG~al~~lLGls~~~ALLLGaILSaTS 725 (759)
....+.+.-+.++.|.+|+|+..+.+.. .++. ++.-++.+|++|.+ +.+ ++..+....--.|+ -..|+
T Consensus 68 l~~wINDgLMaiFFf~VGLEIKrE~~~GeLs~~rka~lPi~AAlGGmivPAl-IY~----~~n~~~~~~~GWgI-PmATD 141 (438)
T PRK14856 68 LHNWIDDVLMALFFLMIGLEIKRELLFGELSSFKKASFPVIAALGGMIAPGL-IYF----FLNADTPSQHGFGI-PMATD 141 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHhccHHHHH-HHh----heecCCCccCcccc-ccHHH
Confidence 4456677788899999999988766542 2332 23456777887743 222 22111111111222 23478
Q ss_pred HHHHHHHHHHcCCC-CChhHHHHHHHHHHHHhhc
Q 004361 726 TAVVLQVLQERGES-TSRHGRATFSVLLFQVTLR 758 (759)
Q Consensus 726 paVVv~VLkELGLL-nSe~GRlaLSalVLqDIls 758 (759)
++..+.+|.=.|-. ....=..+++.+++||+.+
T Consensus 142 IAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgA 175 (438)
T PRK14856 142 IAFALGVIMLLGKRVPTALKVFLITLAVADDLGA 175 (438)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhh
Confidence 88877777666643 3455567889999999864
No 85
>KOG1307 consensus K+-dependent Ca2+/Na+ exchanger NCKX1 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=85.99 E-value=1.6 Score=50.48 Aligned_cols=46 Identities=28% Similarity=0.586 Sum_probs=36.5
Q ss_pred hcccCCccccccccccCCCCccchhhHHHHHHHHHHhhc------hhHHHHHHHHhhh
Q 004361 487 QKKSSRFFPASFFSSAVDGTESTQASIFQGLMEYARKQL------PKLVLGFLLFGAG 538 (759)
Q Consensus 487 ~kkssrff~asffs~~~d~~~~t~~~vf~~l~~s~~~q~------pklv~g~~l~gag 538 (759)
.-+|.||||.+|++|. .=-..|.-||--.-.|. |.-|.|+..++||
T Consensus 418 kp~~rkfF~vTFigSI------lWIA~fSYLMVWwa~~iGeT~gIp~eIMGLTiLAAG 469 (588)
T KOG1307|consen 418 KPRSRKFFPVTFIGSI------LWIAAFSYLMVWWANIIGETLGIPDEIMGLTILAAG 469 (588)
T ss_pred CccccceeehHHHHHH------HHHHHHHHHHHHHHHHcccccCCCHHHhhhhhhhcC
Confidence 4457789999999987 44567888887766654 7889999999999
No 86
>COG5374 Uncharacterized conserved protein [Function unknown]
Probab=85.05 E-value=1.8 Score=44.45 Aligned_cols=50 Identities=34% Similarity=0.430 Sum_probs=42.5
Q ss_pred hhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 004361 274 ENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAE 323 (759)
Q Consensus 274 ~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l~e~ae~aq~~a~kae 323 (759)
+.|+-+.++.+..-...|+.+|.++++|-|+.|+.||+++.+|+.+.|-+
T Consensus 142 eA~~t~lk~~~~~~~~~le~Lqkn~~~~~k~~d~~ne~~~~v~~e~skkk 191 (192)
T COG5374 142 EADSTDLKARLRKAQILLEGLQKNQEELFKLLDKYNELREQVQKESSKKK 191 (192)
T ss_pred hcchHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcC
Confidence 34556666777777788999999999999999999999999999988754
No 87
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=84.87 E-value=56 Score=34.50 Aligned_cols=157 Identities=19% Similarity=0.242 Sum_probs=88.3
Q ss_pred cHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhchhHHHHHHHhhhHhHHHHHHHHhHHHHHHHHHHHHHH---H
Q 004361 150 TDELRELLMNAMKELEVAQLNSTMFEEKAQRISEAAIALKDEAANAWNNVNVTLDMVHEIVNEECIAKEAVHKATM---A 226 (759)
Q Consensus 150 ~~~l~e~l~~a~~ele~a~~ns~~fe~kaq~ise~ai~l~d~a~~a~~~v~~~l~~iq~~~~~e~~akeav~~atm---a 226 (759)
++.-+-.++...++++.-..--.-+.+|+++++..+-.+.+.+..-+++.......|+.+...=.+.-+.+..-.. .
T Consensus 40 ~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~ 119 (264)
T PF06008_consen 40 LNPQKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNENGDQ 119 (264)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCC
Confidence 4455555556655555555555678899999999999999999999999998888888777653333333321111 0
Q ss_pred H--HHHHHHHHHHHHHhhhhccCCCCCCCCcccccCCCCcchhhHHHHHhhhHHHHHHHHHhhHHHHHHhhhhH------
Q 004361 227 L--SLAEARLQVAIESLQDVKQEDDYPEGSTEDDAKSDGKEEDGLLLAAENDIKECQANLANCETELRRLQSKK------ 298 (759)
Q Consensus 227 l--slaearlq~a~e~~~~~~~~~~~~~~s~~~~~~~d~~~~~~~~~~a~~di~~~q~~l~~ce~el~~~q~~k------ 298 (759)
+ +=-...|..|..-|+.+|...=.+ -...|..|.++|+..|......+...|..-
T Consensus 120 ~~~~~l~~~l~ea~~mL~emr~r~f~~-----------------~~~~Ae~El~~A~~LL~~v~~~~~~~~~~~~~l~~~ 182 (264)
T PF06008_consen 120 LPSEDLQRALAEAQRMLEEMRKRDFTP-----------------QRQNAEDELKEAEDLLSRVQKWFQKPQQENESLAEA 182 (264)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhccchh-----------------HHHHHHHHHHHHHHHHHHHHHHHhhHHHhhHHHHHH
Confidence 0 111123444455555555443222 223455666666666666666553333333
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHhhhH
Q 004361 299 -----EELQKEVDRLNEVAEKAQMNALKAE 323 (759)
Q Consensus 299 -----~elqkev~~l~e~ae~aq~~a~kae 323 (759)
.+.--++.-|.+....|+.....|+
T Consensus 183 i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~ 212 (264)
T PF06008_consen 183 IRDDLNDYNAKLQDLRDLLNEAQNKTREAE 212 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444455555555555554
No 88
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=84.11 E-value=20 Score=40.32 Aligned_cols=59 Identities=10% Similarity=0.046 Sum_probs=45.4
Q ss_pred CCchHHHHHHHHHhhcccccccc--c-chhhHHHHHHHHHHHHHHHHhhcCChhHHhhhhhhHH
Q 004361 625 GGSPVLGYLAAGILIGPYGLSII--R-HVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVF 685 (759)
Q Consensus 625 gLP~VVGyILAGIILGPsgLGlI--~-~~eiLe~LAEIGLIfLLFlaGLELDl~~LKr~~K~iL 685 (759)
.+|+++--++.|+++... |++ + .......+.+..+.+-+|+.=+..|++.++|..++.+
T Consensus 24 ~l~~~vl~~~~~~~lsnl--gli~~p~~s~~y~~v~~~~vPlai~LlLl~~Dlr~i~~~g~~~l 85 (378)
T PF05684_consen 24 YLPGAVLCYLLGMLLSNL--GLIDSPASSPVYDFVWTYLVPLAIPLLLLSADLRRILRLGGRLL 85 (378)
T ss_pred hcCHHHHHHHHHHHHHHC--CCcCCCCcchHHHHHHHHHHHHHHHHHHHHccHHHHHHhhHHHH
Confidence 468887788899999875 455 3 2345677888888888888888999999999877655
No 89
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=83.71 E-value=6.4 Score=43.71 Aligned_cols=90 Identities=21% Similarity=0.335 Sum_probs=49.8
Q ss_pred HHHHHHhhc----ccccccccchhhHHHHHHHHHHHHHHHHhhcCChhHHhhhhhhHHHHHHHHHHHHH--HHHHHHHHH
Q 004361 632 YLAAGILIG----PYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTA--VVVGLVAHF 705 (759)
Q Consensus 632 yILAGIILG----PsgLGlI~~~eiLe~LAEIGLIfLLFlaGLELDl~~LKr~~K~iLvLAilgVLLp~--~lVG~al~~ 705 (759)
.++.|+++| |.+...+.+ ++..+-.-.+.++|..+|+.- .++++..++....+-.++++.|. ..+|+.+++
T Consensus 182 LLlGgliIG~~~g~~g~~~i~p--f~~~lF~G~L~lFLLeMGl~A-~~rL~~l~~~g~~li~Fgi~~Pli~a~ig~~lg~ 258 (327)
T PF05982_consen 182 LLLGGLIIGFLAGPEGVESIKP--FFVDLFKGVLCLFLLEMGLVA-ARRLRDLRKVGWFLIAFGILMPLINALIGIGLGW 258 (327)
T ss_pred HHHHHHHHhheeCccchhhccc--hhhccHHHHHHHHHHHhhHHH-HHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566555 443332221 222222334667777888863 34444444444444455556664 335666677
Q ss_pred HhCCChHHHHHHHHHHhhc
Q 004361 706 VSGLPGPASIVIGNGLALS 724 (759)
Q Consensus 706 lLGls~~~ALLLGaILSaT 724 (759)
++|++...++++++..+..
T Consensus 259 ~~gls~Gg~~llavLaASA 277 (327)
T PF05982_consen 259 LLGLSPGGAVLLAVLAASA 277 (327)
T ss_pred HhCCCCccHHHHHHHHhhH
Confidence 7899888777777665543
No 90
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=83.54 E-value=12 Score=37.33 Aligned_cols=25 Identities=24% Similarity=0.537 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhhcCChhHHhhhhhh
Q 004361 659 FGVVFLLFNIGLELSVERLSSMKKY 683 (759)
Q Consensus 659 IGLIfLLFlaGLELDl~~LKr~~K~ 683 (759)
+.+.++||..|+.++++.+++..|+
T Consensus 2 i~l~~~mf~~gl~~~~~~l~~~~~~ 26 (187)
T PF01758_consen 2 ILLFLMMFSMGLSLTFEDLRRVLRR 26 (187)
T ss_dssp -HHHHHHHHHHHC--GGGGHHHHHS
T ss_pred hhhhHHHHHhhhcccHHHHHHHHhC
Confidence 4678999999999999999876544
No 91
>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=83.30 E-value=8.7 Score=44.03 Aligned_cols=101 Identities=16% Similarity=0.060 Sum_probs=60.7
Q ss_pred hHHHHHHHHHHHHHHHHhhcCChhHHhh---h-hhh--HHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhcc
Q 004361 652 GTKAIAEFGVVFLLFNIGLELSVERLSS---M-KKY--VFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSS 725 (759)
Q Consensus 652 iLe~LAEIGLIfLLFlaGLELDl~~LKr---~-~K~--iLvLAilgVLLp~~lVG~al~~lLGls~~~ALLLGaILSaTS 725 (759)
....+.+.-+.++.|.+|+|+..+.+.. . ++. .+.-++.+|++|.+ +.+++ . .|-+ ..--.|+ -..|+
T Consensus 63 l~~wINDgLMaiFFf~VGLEIKrE~l~GeLs~~r~a~lPiiAAlGGmivPAl-Iy~~~-n-~~~~--~~~GWgI-PmATD 136 (423)
T PRK14855 63 LEHWVNDGLMAVFFLLVGLEIKRELLIGELSSPRQAALAVVAALGGMLVPAA-LYTAL-N-AGGP--GASGWGV-PMATD 136 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHhchHHHHH-HHhee-e-cCCC--ccCcccc-ccHHH
Confidence 3455666778899999999998776632 2 222 23456777777743 22211 1 1211 1112222 23488
Q ss_pred HHHHHHHHHHcCCC-CChhHHHHHHHHHHHHhhc
Q 004361 726 TAVVLQVLQERGES-TSRHGRATFSVLLFQVTLR 758 (759)
Q Consensus 726 paVVv~VLkELGLL-nSe~GRlaLSalVLqDIls 758 (759)
++..+.+|.=.|-. ....-..+++.+++||+.+
T Consensus 137 IAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgA 170 (423)
T PRK14855 137 IAFALGVLALLGSRVPLGLKVFLTALAIVDDLGA 170 (423)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhh
Confidence 88888877777653 3345577889999999864
No 92
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=83.25 E-value=12 Score=46.15 Aligned_cols=26 Identities=12% Similarity=0.093 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHhhcCChhHHh
Q 004361 653 TKAIAEFGVVFLLFNIGLELSVERLS 678 (759)
Q Consensus 653 Le~LAEIGLIfLLFlaGLELDl~~LK 678 (759)
.+.+..+..++++++.|+.+.+..+.
T Consensus 293 ~e~ie~LLn~~lFVlLGa~L~~~~l~ 318 (810)
T TIGR00844 293 SNVIDVLLNYAYFVYLGSILPWKDFN 318 (810)
T ss_pred HHHHHHHHHHHHHHHHHHhhCHhhcc
Confidence 34555556666777889888887764
No 93
>COG3329 Predicted permease [General function prediction only]
Probab=82.82 E-value=9 Score=42.58 Aligned_cols=92 Identities=20% Similarity=0.323 Sum_probs=44.6
Q ss_pred chHHHHHHHHHhhccc----ccccccchhhHHHHHHHHHHHHHHHHhhcCChhHHhhhhhhHHHHHHHHHHHHH--HHHH
Q 004361 627 SPVLGYLAAGILIGPY----GLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTA--VVVG 700 (759)
Q Consensus 627 P~VVGyILAGIILGPs----gLGlI~~~eiLe~LAEIGLIfLLFlaGLELDl~~LKr~~K~iLvLAilgVLLp~--~lVG 700 (759)
|.++ .++.|+++|-. +...++ .+...+-+=.++++|..+|++- .++++..++....+-+++++.|. ..+|
T Consensus 218 pal~-lllggl~iGlitGe~g~~vl~--~F~~~lFqGvL~lflL~MGm~A-~rrl~elrk~g~~~v~fgllaPil~g~ig 293 (372)
T COG3329 218 PALV-LLLGGLAIGLITGEQGESVLK--PFFDPLFQGVLCLFLLDMGMTA-GRRLKELRKVGQGLVLFGLLAPILHGFIG 293 (372)
T ss_pred chHH-HHHHHHHHhheeccCchhhhh--hhhHHHHHHHHHHHHHHHhHHH-HHHHHHHHhcCcceehHHHHHHHHHHHHH
Confidence 4443 56777777743 111121 1333444456778888899974 34444433333223334444553 2234
Q ss_pred HHHHHHh----CCChHHHHHHHHHHh
Q 004361 701 LVAHFVS----GLPGPASIVIGNGLA 722 (759)
Q Consensus 701 ~al~~lL----Gls~~~ALLLGaILS 722 (759)
+.++++. |++.....+++.+.+
T Consensus 294 ~~lg~~a~y~tgfs~g~~vllAVlaa 319 (372)
T COG3329 294 LLLGMIAGYPTGFSDGGVVLLAVLAA 319 (372)
T ss_pred HHHHHHhcccccCCCcchHHHHHHhc
Confidence 4444444 444433455555444
No 94
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=82.68 E-value=1.7e+02 Score=38.35 Aligned_cols=37 Identities=16% Similarity=0.296 Sum_probs=21.6
Q ss_pred HHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHH
Q 004361 270 LLAAENDIKECQANLANCETELRRLQSKKEELQKEVD 306 (759)
Q Consensus 270 ~~~a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~ 306 (759)
+....+++..++..+..-+.++.+...++.++.+++.
T Consensus 349 a~~~~~~~~~a~~~~e~~~~~~~~~~~r~~~~~~~l~ 385 (1353)
T TIGR02680 349 AADARQAIREAESRLEEERRRLDEEAGRLDDAERELR 385 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455566666666666666666666666555543
No 95
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=82.13 E-value=75 Score=34.10 Aligned_cols=92 Identities=10% Similarity=0.105 Sum_probs=49.6
Q ss_pred HHHHHHhcCC---CchHHHHHHHHHhhccccccc---ccchhhHHHHHHHHHHHHHHHHhhcCChhHHhhhhhhHHHHHH
Q 004361 616 FVPIFQKIPG---GSPVLGYLAAGILIGPYGLSI---IRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGS 689 (759)
Q Consensus 616 Lg~LlrRL~g---LP~VVGyILAGIILGPsgLGl---I~~~eiLe~LAEIGLIfLLFlaGLELDl~~LKr~~K~iLvLAi 689 (759)
...+.+|.++ .|-+++.++...++=...... ....+++.++- |-...-|..-+-=.++.+|++|+.++.-.+
T Consensus 21 a~~l~~r~~~~~l~PlLv~~~~li~~L~~~~i~Y~~Y~~g~~~i~~lL--gPAtVAlAvPLYkq~~~ik~~w~~I~~g~~ 98 (230)
T COG1346 21 AKRLYKRTKSPFLNPLLVATVLLIAFLLLFGISYEDYMKGGQWINFLL--GPATVALAVPLYKQRHLIKRHWKPILAGVL 98 (230)
T ss_pred HHHHHHhcCCcccchHHHHHHHHHHHHHHcCCCHHHHhcccHHHHHHH--HHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666621 354554444433333222111 12234555443 344555666676688999999998775555
Q ss_pred HHHHHHHHHHHHHHHHHhCCC
Q 004361 690 AQVLVTAVVVGLVAHFVSGLP 710 (759)
Q Consensus 690 lgVLLp~~lVG~al~~lLGls 710 (759)
.+.++.+ +.++++..++|++
T Consensus 99 vGs~~ai-~s~~llak~~g~~ 118 (230)
T COG1346 99 VGSVVAI-ISGVLLAKLFGLS 118 (230)
T ss_pred HHHHHHH-HHHHHHHHHhCCC
Confidence 5555443 3455556667765
No 96
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=82.08 E-value=1.7e+02 Score=37.83 Aligned_cols=41 Identities=20% Similarity=0.212 Sum_probs=22.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004361 204 DMVHEIVNEECIAKEAVHKATMALSLAEARLQVAIESLQDV 244 (759)
Q Consensus 204 ~~iq~~~~~e~~akeav~~atmalslaearlq~a~e~~~~~ 244 (759)
..+...-.++-.++..-++|-..|..++.+++-..+.++..
T Consensus 490 ~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l 530 (1201)
T PF12128_consen 490 QAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAEL 530 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334455555555666666666666655554444443
No 97
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=81.77 E-value=25 Score=37.64 Aligned_cols=152 Identities=17% Similarity=0.148 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHhchhHHHHHHHhhhHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 004361 154 RELLMNAMKELEVAQLN-STMFEEKAQRISEAAIALKDEAANAWNNVNVTLDMVHEIVNEECIAKEAVHKATMALSLAEA 232 (759)
Q Consensus 154 ~e~l~~a~~ele~a~~n-s~~fe~kaq~ise~ai~l~d~a~~a~~~v~~~l~~iq~~~~~e~~akeav~~atmalslaea 232 (759)
-+-+.+--++|+.||-. +...-+-.+++.+.+=-|-.-...|+==.+ +...-.+.-.+=-.|....++|.-++..|+.
T Consensus 20 td~IN~lE~~L~~ar~~fr~~l~e~~~kL~~~~kkLg~~I~karPYye-a~~~a~~aq~e~q~Aa~~yerA~~~h~aAKe 98 (239)
T PF05276_consen 20 TDEINRLENELDEARATFRRLLSESTKKLNELAKKLGSCIEKARPYYE-ARRKAKEAQQEAQKAALQYERANSMHAAAKE 98 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466667788888876 444555555665555555443333322211 0111111111112355555666666666666
Q ss_pred HHHHHHHHhhhhccCCCCCCCCcccccCCCCcchhhHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHH
Q 004361 233 RLQVAIESLQDVKQEDDYPEGSTEDDAKSDGKEEDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVA 312 (759)
Q Consensus 233 rlq~a~e~~~~~~~~~~~~~~s~~~~~~~d~~~~~~~~~~a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l~e~a 312 (759)
.+.+|..++....+ -.-...-.|.|--|-..+.+.+..-..+|.+-++....-.++.++|-.|...-
T Consensus 99 ~v~laEq~l~~~~~-------------~~~D~~wqEmLn~A~~kVneAE~ek~~ae~eH~~~~~~~~~ae~~v~~Lek~l 165 (239)
T PF05276_consen 99 MVALAEQSLMSDSN-------------WTFDPAWQEMLNHATQKVNEAEQEKTRAEREHQRRARIYNEAEQRVQQLEKKL 165 (239)
T ss_pred HHHHHHHHHhcCCc-------------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666665210 01112345888899999999999999999998888888888888888887666
Q ss_pred HHHHHHH
Q 004361 313 EKAQMNA 319 (759)
Q Consensus 313 e~aq~~a 319 (759)
.++=..+
T Consensus 166 kr~I~KS 172 (239)
T PF05276_consen 166 KRAIKKS 172 (239)
T ss_pred HHHHHhh
Confidence 5554443
No 98
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=81.63 E-value=66 Score=32.87 Aligned_cols=60 Identities=25% Similarity=0.266 Sum_probs=45.4
Q ss_pred cHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhchhHHHHHHHhhhHhHHHHHHHHhHHHHHHHHHH
Q 004361 150 TDELRELLMNAMKELEVAQLNSTMFEEKAQRISEAAIALKDEAANAWNNVNVTLDMVHEIVNEECIAKEAVH 221 (759)
Q Consensus 150 ~~~l~e~l~~a~~ele~a~~ns~~fe~kaq~ise~ai~l~d~a~~a~~~v~~~l~~iq~~~~~e~~akeav~ 221 (759)
+.++.+.|.+++..+..+..+..+++.+..++-+.+--+.+.|.-|-.. .+|-.|++|.+
T Consensus 32 ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~------------g~edLAr~al~ 91 (221)
T PF04012_consen 32 IRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAA------------GREDLAREALQ 91 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------------CCHHHHHHHHH
Confidence 6678888889999999899999999988888888877777777666332 24556666655
No 99
>COG2985 Predicted permease [General function prediction only]
Probab=81.60 E-value=6.9 Score=45.68 Aligned_cols=127 Identities=19% Similarity=0.259 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCC-----CchHHHHHHHHHhhcccc----cccccchhhHHHHHHHHHHHHHHHHhhcCCh
Q 004361 604 FDVLWLLLASVIFVPIFQKIPG-----GSPVLGYLAAGILIGPYG----LSIIRHVHGTKAIAEFGVVFLLFNIGLELSV 674 (759)
Q Consensus 604 lqL~LILlaA~LLg~LlrRL~g-----LP~VVGyILAGIILGPsg----LGlI~~~eiLe~LAEIGLIfLLFlaGLELDl 674 (759)
+-+.+-+.++.+++.+=-.+++ +-..-|-+++|++||-.+ +-+.-++.....+.++|+.++|=.+|+.--.
T Consensus 368 Lp~~ig~~LGvllGsIp~~~pg~~s~~LG~aGGpLivaLiLG~ig~iGpl~w~mP~~An~~lrelGl~lFLA~VGl~aG~ 447 (544)
T COG2985 368 LPFAIGLGLGVLLGSIPFPLPGPGSFKLGNAGGPLIVALILGFIGAIGPLTWFMPPGALLALRELGLALFLAGVGLSAGS 447 (544)
T ss_pred HHHHHHHHHHHhheeeEeccCCCceEeecccccHHHHHHHHHHhcccCceEEEcChhHHHHHHHHHHHHHHHhhcccccc
Confidence 4444445556666544333321 112346777888887432 1122245667899999988877777776544
Q ss_pred hHHhh---hhhhHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHH-hhccHHHHHHH
Q 004361 675 ERLSS---MKKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGL-ALSSTAVVLQV 732 (759)
Q Consensus 675 ~~LKr---~~K~iLvLAilgVLLp~~lVG~al~~lLGls~~~ALLLGaIL-SaTSpaVVv~V 732 (759)
+..-. .+-.++..|.+-.++|.+.++++.+|++.++|. .+.|++. +.|+||...-+
T Consensus 448 ~f~~tL~~~Gl~~ig~g~lit~vp~i~~~llg~~v~kmn~~--~l~G~laGs~T~ppaLa~a 507 (544)
T COG2985 448 GFVNTLTGSGLQIIGYGALVTLVPVIIVFLLGRYVLKMNWL--LLCGALAGSMTDPPALAFA 507 (544)
T ss_pred chHhhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHhccHH--HHhhHHhcCCCChHHHHHH
Confidence 33222 233344556665666766666777788777754 3444444 45777765443
No 100
>COG1380 Putative effector of murein hydrolase LrgA [General function prediction only]
Probab=81.24 E-value=18 Score=35.33 Aligned_cols=100 Identities=14% Similarity=0.154 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCc---hHHHHHHHHHhhcccccccccchhhH-----HHHHHHHHHHHHHHHhhcCC
Q 004361 602 SLFDVLWLLLASVIFVPIFQKIPGGS---PVLGYLAAGILIGPYGLSIIRHVHGT-----KAIAEFGVVFLLFNIGLELS 673 (759)
Q Consensus 602 lLlqL~LILlaA~LLg~LlrRL~gLP---~VVGyILAGIILGPsgLGlI~~~eiL-----e~LAEIGLIfLLFlaGLELD 673 (759)
.+.++++++.+..+..++.+-+ ++| +++|+++.=+++. ++.++ .+++ ..++++++.|+==.+|+=-.
T Consensus 7 ~~~q~~ii~~~~~~G~~i~~~l-~lplPGsIiGmvLLfllL~---~~iv~-l~wv~~~a~~Ll~~m~llFVPa~VgVm~y 81 (128)
T COG1380 7 ILRQLAIILGFLFLGEWIASLL-HLPLPGSIIGMVLLFLLLA---LKIVK-LEWVERGATFLLRNMALLFVPAGVGVMNY 81 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-CCCCChhHHHHHHHHHHHH---hCCcc-HHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 4567777776666655555555 554 3555443222222 23332 1222 23334343333334555445
Q ss_pred hhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004361 674 VERLSSMKKYVFGLGSAQVLVTAVVVGLVAHFV 706 (759)
Q Consensus 674 l~~LKr~~K~iLvLAilgVLLp~~lVG~al~~l 706 (759)
.+.+...+.+++...+++.++.+.++|+...++
T Consensus 82 ~~~l~~~~~~Il~~~iiST~lv~~vtg~~~~~l 114 (128)
T COG1380 82 FDLLAADGLPILVVIIISTLLVLLVTGWVVQLL 114 (128)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666666655556555443
No 101
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=80.10 E-value=7.7 Score=44.13 Aligned_cols=145 Identities=15% Similarity=0.118 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHH---HHHHhcCCCc-hHHHHHHHHHhhcccccccccchhhHH-HHHHHHHHHHHHHHhhcCChhHHhh
Q 004361 605 DVLWLLLASVIFV---PIFQKIPGGS-PVLGYLAAGILIGPYGLSIIRHVHGTK-AIAEFGVVFLLFNIGLELSVERLSS 679 (759)
Q Consensus 605 qL~LILlaA~LLg---~LlrRL~gLP-~VVGyILAGIILGPsgLGlI~~~eiLe-~LAEIGLIfLLFlaGLELDl~~LKr 679 (759)
...++++++.++. .+++|+ .+| ||+|=++ +.+++|.+.+...-...+. .+-+.-+..+.-.+|+.-+++.+++
T Consensus 13 ~a~lllllG~~l~kki~fl~k~-~IPepVvgG~i-~ail~~~~~~~~~~~~~fd~~l~~~fmliFFttiglsa~~~~lkk 90 (404)
T COG0786 13 LAILLLLLGRFLVKKIKFLKKY-CIPEPVVGGLI-FAILLLLLHGFGGVSLNFDTSLQDVFMLIFFATIGLSASFKLLKK 90 (404)
T ss_pred HHHHHHHHHHHHHHHhHHHHHc-cCCcchHHHHH-HHHHHHHHHhcceEEEeCCcccccHHHHHHHHHhccccchhHHHh
Confidence 3334445554443 667777 788 4554433 3344444333321110010 1222333334446789999999999
Q ss_pred hhhhHHHHHHHHHHHHH--HHHHHHHHHHhCCChHHHHHHHHHHhh---ccHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 004361 680 MKKYVFGLGSAQVLVTA--VVVGLVAHFVSGLPGPASIVIGNGLAL---SSTAVVLQVLQERGESTSRHGRATFSVLLF 753 (759)
Q Consensus 680 ~~K~iLvLAilgVLLp~--~lVG~al~~lLGls~~~ALLLGaILSa---TSpaVVv~VLkELGLLnSe~GRlaLSalVL 753 (759)
-+|+......+.+.+.+ -++|..+..++|+.+..+++.|.+--. -..+-..+.+.++|.- .-..++++++-+
T Consensus 91 gGk~l~if~~~a~~l~~~Qn~igi~la~~lgidpl~gllagsIsl~GGHGtaAA~~~~f~~~G~~--~A~~va~A~ATf 167 (404)
T COG0786 91 GGKKLAIFLATAAGLAVLQNFIGIGLAKLLGLDPLIGLLAGSISLVGGHGTAAAWGPTFEDLGAE--GATEVAMASATF 167 (404)
T ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHhcceeecCCCchHHHHHHHHHhcCCc--chHHHHHHHHHH
Confidence 88875533222222211 124555555667776655554322111 1233455677777653 223344444433
No 102
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=79.82 E-value=1.8e+02 Score=37.45 Aligned_cols=48 Identities=25% Similarity=0.376 Sum_probs=22.5
Q ss_pred hHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 004361 268 GLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKA 315 (759)
Q Consensus 268 ~~~~~a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l~e~ae~a 315 (759)
+.+..++..+..|+.....|..++..++....+++++-++..+....+
T Consensus 469 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~ 516 (1201)
T PF12128_consen 469 EQLEQADKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQA 516 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444445555555555555555544444444444444333333
No 103
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=79.81 E-value=1.5e+02 Score=40.28 Aligned_cols=130 Identities=17% Similarity=0.241 Sum_probs=80.6
Q ss_pred HHHhch-hHHHHHHHhhhHhHHHHHHHHhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhhccCCCCCCCCcccccC
Q 004361 184 AAIALK-DEAANAWNNVNVTLDMVHEIVNEECIAKEAVHKA--TMALSLAEARLQVAIESLQDVKQEDDYPEGSTEDDAK 260 (759)
Q Consensus 184 ~ai~l~-d~a~~a~~~v~~~l~~iq~~~~~e~~akeav~~a--tmalslaearlq~a~e~~~~~~~~~~~~~~s~~~~~~ 260 (759)
.-|.-+ ++....|.+.+.+++++|.....|.-+|..+-.. .|...+-+...++ +...... .|.-
T Consensus 1565 r~l~ek~Ee~E~~rk~~~~~i~~~q~~Le~E~r~k~e~~r~KKkle~di~elE~~l--d~ank~~-----------~d~~ 1631 (1930)
T KOG0161|consen 1565 RRLQEKDEEIEELRKNLQRQLESLQAELEAETRSKSEALRSKKKLEGDINELEIQL--DHANKAN-----------EDAQ 1631 (1930)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhhhcchHHHHHHH--HHHHHhh-----------HHHH
Confidence 334444 4568999999999999999999888887655433 2222233322222 1111110 1112
Q ss_pred CCCcchhhHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 004361 261 SDGKEEDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDV 326 (759)
Q Consensus 261 ~d~~~~~~~~~~a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l~e~ae~aq~~a~kaeedv 326 (759)
+-.++....+-..|.+..+|++...+--++++..+.|...|+.|...|....+.+.-+-..||.+.
T Consensus 1632 K~lkk~q~~~k~lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~ 1697 (1930)
T KOG0161|consen 1632 KQLKKLQAQLKELQRELEDAQRAREELLEQLAEAERRLAALQAELEELREKLEALERARRQAELEL 1697 (1930)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 223334455666777888888888887777777778888888888777777766666555555443
No 104
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=79.65 E-value=54 Score=37.05 Aligned_cols=76 Identities=28% Similarity=0.343 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCch--HHH-HHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHhhcCChhHH
Q 004361 601 ASLFDVLWLLLASVIFVPIFQKIPGGSP--VLG-YLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERL 677 (759)
Q Consensus 601 ~lLlqL~LILlaA~LLg~LlrRL~gLP~--VVG-yILAGIILGPsgLGlI~~~eiLe~LAEIGLIfLLFlaGLELDl~~L 677 (759)
..+.+++++++++.++++++..+ ++|. +.| -+++|++.+-.+.. ++-+. .+..+|.+.+=-.+|..+..+.+
T Consensus 6 ~~~~~w~i~l~ls~~~g~l~~~~-~vPa~~mlG~~l~a~~v~~~~~~~-l~~P~---~l~~~~q~ilG~~ig~~~t~s~l 80 (352)
T COG3180 6 PIILQWFILLLLSLLGGWLLTLL-HVPAAWMLGAPLLAGIVAGLRGLT-LPLPR---GLFKAGQVILGIMIGASLTPSVL 80 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHhcccc-ccCCh---HHHHHHHHHHHHHHhhhcCHHHH
Confidence 34678888889999999999998 8764 566 67777777744322 23333 44455666666688999998877
Q ss_pred hhhh
Q 004361 678 SSMK 681 (759)
Q Consensus 678 Kr~~ 681 (759)
....
T Consensus 81 ~~l~ 84 (352)
T COG3180 81 DTLK 84 (352)
T ss_pred HHHH
Confidence 6533
No 105
>COG5420 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=79.53 E-value=5.7 Score=34.94 Aligned_cols=51 Identities=37% Similarity=0.456 Sum_probs=39.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh-hhH---HHHHHHHHHHHHHHH--HHHHHhhh
Q 004361 296 SKKEELQKEVDRLNEVAEKAQMNAL-KAE---EDVANIMLLAEQAVA--FEIEATQR 346 (759)
Q Consensus 296 ~~k~elqkev~~l~e~ae~aq~~a~-kae---edvanim~laeqava--~e~ea~q~ 346 (759)
+..+|+||+|.|||-.|..|.|+-- .|| -+...||-.||.+.+ .||.+++|
T Consensus 6 s~l~eiqkKvrkLqsrAg~akm~LhDLAEgLP~~wtei~~VA~kt~~~yaeLD~~k~ 62 (71)
T COG5420 6 SSLEEIQKKVRKLQSRAGQAKMELHDLAEGLPVKWTEIMAVAEKTFEAYAELDAAKR 62 (71)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHHHhccCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999999853 343 356889999998754 46666554
No 106
>PRK10698 phage shock protein PspA; Provisional
Probab=79.21 E-value=88 Score=32.84 Aligned_cols=31 Identities=10% Similarity=0.176 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 004361 151 DELRELLMNAMKELEVAQLNSTMFEEKAQRI 181 (759)
Q Consensus 151 ~~l~e~l~~a~~ele~a~~ns~~fe~kaq~i 181 (759)
.++++-|.+++..+..+-....++|.+..++
T Consensus 34 ~em~~~l~~~r~alA~~~A~~k~~er~~~~~ 64 (222)
T PRK10698 34 QEMEDTLVEVRSTSARALAEKKQLTRRIEQA 64 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555554444444444444444333
No 107
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=78.28 E-value=35 Score=37.02 Aligned_cols=47 Identities=21% Similarity=0.225 Sum_probs=27.0
Q ss_pred HhhhHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004361 197 NNVNVTLDMVHEIVNEECIAKEAVHKATMALSLAEARLQVAIESLQD 243 (759)
Q Consensus 197 ~~v~~~l~~iq~~~~~e~~akeav~~atmalslaearlq~a~e~~~~ 243 (759)
......++..+....+-.+.++.+.++...+.-|++.++.+..-+..
T Consensus 131 ~~a~~~~~R~~~L~~~g~vS~~~~~~a~~~~~~a~~~l~~a~~~~~~ 177 (346)
T PRK10476 131 KLATRTLERLEPLLAKGYVSAQQVDQARTAQRDAEVSLNQALLQAQA 177 (346)
T ss_pred HHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555666666666666666666666666666655544443
No 108
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=78.14 E-value=99 Score=32.84 Aligned_cols=51 Identities=22% Similarity=0.194 Sum_probs=37.4
Q ss_pred cHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhchhHHHHHHHhhh
Q 004361 150 TDELRELLMNAMKELEVAQLNSTMFEEKAQRISEAAIALKDEAANAWNNVN 200 (759)
Q Consensus 150 ~~~l~e~l~~a~~ele~a~~ns~~fe~kaq~ise~ai~l~d~a~~a~~~v~ 200 (759)
+.+.++-|.+|+..+.-+..+-.-||.+..+..+.+=-++..|..|-..=|
T Consensus 33 ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~ 83 (225)
T COG1842 33 IRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGN 83 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 566777788888888888888888888888877776666666665554433
No 109
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=78.09 E-value=10 Score=42.13 Aligned_cols=52 Identities=19% Similarity=0.259 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHhhcCChhHHhhh---hhhHHHHHHHHHHHHHHHHHHHHHHHhC
Q 004361 656 IAEFGVVFLLFNIGLELSVERLSSM---KKYVFGLGSAQVLVTAVVVGLVAHFVSG 708 (759)
Q Consensus 656 LAEIGLIfLLFlaGLELDl~~LKr~---~K~iLvLAilgVLLp~~lVG~al~~lLG 708 (759)
.-.+++.++||..|+.++.+.++.. ++..+.....++++.- ++|+++.+++.
T Consensus 39 ~~~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmP-lla~~~~~~~~ 93 (319)
T COG0385 39 AIPIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMP-LLALLLAKLFP 93 (319)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHH-HHHHHHHHHcC
Confidence 4478899999999999999998764 4444433333333221 24555544443
No 110
>PF13514 AAA_27: AAA domain
Probab=78.00 E-value=2.1e+02 Score=36.51 Aligned_cols=27 Identities=19% Similarity=0.322 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 004361 158 MNAMKELEVAQLNSTMFEEKAQRISEA 184 (759)
Q Consensus 158 ~~a~~ele~a~~ns~~fe~kaq~ise~ 184 (759)
+...++++..+-.-..|++++..+...
T Consensus 746 ~~~~~ri~~~~~~~~~f~~~~~~L~~~ 772 (1111)
T PF13514_consen 746 RELRRRIEQMEADLAAFEEQVAALAER 772 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456667777788899998888754
No 111
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=77.82 E-value=1e+02 Score=32.97 Aligned_cols=50 Identities=12% Similarity=0.023 Sum_probs=33.3
Q ss_pred HHHHHHHHHhhcCChhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 004361 660 GVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHFVSGLP 710 (759)
Q Consensus 660 GLIfLLFlaGLELDl~~LKr~~K~iLvLAilgVLLp~~lVG~al~~lLGls 710 (759)
|-...-|..-+--+++.+|++++.++.-.+++.++.+ +.++++.+++|.+
T Consensus 72 gPAtVALAvPLY~q~~~lk~~~~~Il~~~~vG~~~~i-~s~~~la~~lgl~ 121 (232)
T PRK04288 72 EPATIAFAIPLYKKRDVLKKYWWQILGGIVVGSVCSV-LIIYLVAKLIQLD 121 (232)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCcC
Confidence 4445555666666789999999887765566666554 3455666677775
No 112
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=77.76 E-value=23 Score=34.77 Aligned_cols=61 Identities=25% Similarity=0.328 Sum_probs=54.4
Q ss_pred HHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 004361 269 LLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVANI 329 (759)
Q Consensus 269 ~~~~a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l~e~ae~aq~~a~kaeedvani 329 (759)
-...+...+++........|.|+..||.|..-|..+|+++++....++-+....+..+++.
T Consensus 15 r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~ 75 (143)
T PF12718_consen 15 RAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNA 75 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhH
Confidence 3456788899999999999999999999999999999999999999999888888777663
No 113
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=77.37 E-value=18 Score=39.78 Aligned_cols=94 Identities=29% Similarity=0.362 Sum_probs=49.5
Q ss_pred HHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 004361 270 LLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVANIMLLAEQAVAFEIEATQRVND 349 (759)
Q Consensus 270 ~~~a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l~e~ae~aq~~a~kaeedvanim~laeqava~e~ea~q~~nd 349 (759)
|..+..++.+-+..|...+-+|.+-+...+++-+++..=++.+++.+..+.+-|+.+ + .-++++=..-=||-..++.
T Consensus 10 L~et~~~V~~m~~~L~~~~~~L~~k~~e~e~ll~~i~~~~~~a~~~~~~~~~ee~~~-~--~~~~ei~~~~~~a~~~L~~ 86 (344)
T PF12777_consen 10 LKETEEQVEEMQEELEEKQPELEEKQKEAEELLEEIEKEQEEAEKKKAIVEEEEEEA-E--KQAKEIEEIKEEAEEELAE 86 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-H--HHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--HHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555555555554444444444443332222222 1 1122221222356677888
Q ss_pred HHHHHHHHHHhhcCCCC
Q 004361 350 AEIALQRAEKSLSNSSV 366 (759)
Q Consensus 350 aeial~ka~k~~~~~~~ 366 (759)
|+=+|..|.+++++++.
T Consensus 87 a~P~L~~A~~al~~l~k 103 (344)
T PF12777_consen 87 AEPALEEAQEALKSLDK 103 (344)
T ss_dssp HHHHHHHHHHHHHCS-H
T ss_pred HHHHHHHHHHHHHhCCH
Confidence 99999999999998884
No 114
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=76.95 E-value=36 Score=36.84 Aligned_cols=107 Identities=19% Similarity=0.199 Sum_probs=57.0
Q ss_pred CCchHHHHHHHHHhhccccccc---ccc--hhhHHHHHHHHHHHHHHHHhhcCChhHHhh--hhhhHH-HHHHHHHHHHH
Q 004361 625 GGSPVLGYLAAGILIGPYGLSI---IRH--VHGTKAIAEFGVVFLLFNIGLELSVERLSS--MKKYVF-GLGSAQVLVTA 696 (759)
Q Consensus 625 gLP~VVGyILAGIILGPsgLGl---I~~--~eiLe~LAEIGLIfLLFlaGLELDl~~LKr--~~K~iL-vLAilgVLLp~ 696 (759)
..|++++ +++|++++-..+.. ++. .+.+..++...+.+.||..|..+.....+. .++... .+.+=-+++|.
T Consensus 243 ~nP~~~a-~~lgli~~~~~~~~~~~~~~~i~~~~~~lg~~~~pl~l~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~P~ 321 (385)
T PF03547_consen 243 KNPPLIA-IILGLIIGLIPPLRPLFFPSFITDSLSYLGAAAVPLALFVLGASLARGPRKSALGWKPSIIAVLVRLIILPL 321 (385)
T ss_pred hCcHHHH-HHHHHHHHHHHHhcccchHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHH
Confidence 6688875 67888887432111 111 356788999999999999999887654332 122222 22222234553
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHhhccHHHHHHHHHH
Q 004361 697 VVVGLVAHFVSGLPGPASIVIGNGLALSSTAVVLQVLQE 735 (759)
Q Consensus 697 ~lVG~al~~lLGls~~~ALLLGaILSaTSpaVVv~VLkE 735 (759)
+++.+.++++++..... ...+.+.+-+++...++..
T Consensus 322 --i~~~~~~~~~l~~~~~~-~~~~~~~~P~a~~~~~~a~ 357 (385)
T PF03547_consen 322 --IGIGIVFLLGLDGDMAR-VLILQAAMPTAINSFVIAS 357 (385)
T ss_pred --HHHHHHHHHCCCHHHHH-HHHHhccCCchHHHHHHHH
Confidence 34444556676543221 2222233444444444443
No 115
>PF05817 Ribophorin_II: Oligosaccharyltransferase subunit Ribophorin II; InterPro: IPR008814 This family consists of several eukaryotic Ribophorin II (RPN2) proteins. The mammalian oligosaccharyltransferase (OST) is a protein complex that effects the cotranslational N-glycosylation of newly synthesised polypeptides, and is composed of at least four rough ER-specific membrane proteins: ribophorins I and II (RI and RII), OST48, and Dadl. The mechanism(s) by which the subunits of this complex are retained in the ER are not well understood [].; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0018279 protein N-linked glycosylation via asparagine, 0005789 endoplasmic reticulum membrane, 0008250 oligosaccharyltransferase complex
Probab=76.76 E-value=9.7 Score=45.62 Aligned_cols=90 Identities=14% Similarity=0.151 Sum_probs=55.7
Q ss_pred CCchHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHhhcCChhHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 004361 625 GGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAH 704 (759)
Q Consensus 625 gLP~VVGyILAGIILGPsgLGlI~~~eiLe~LAEIGLIfLLFlaGLELDl~~LKr~~K~iLvLAilgVLLp~~lVG~al~ 704 (759)
+-|.++.+++.|+++.|. ++++..|+..|. |+..+...... +.+...++. +.|++..
T Consensus 544 ~pp~~vS~~F~~~vlapl----------------~~Ll~~W~~lG~--Nl~~l~~~~~~---~~F~~~l~a--i~glf~~ 600 (636)
T PF05817_consen 544 RPPKIVSLVFTGLVLAPL----------------LVLLILWLKLGA--NLSNLPFSPSA---ILFHGGLGA--IEGLFFL 600 (636)
T ss_pred CCchHHHHHHHHHHHHHH----------------HHHHHHHHHcCc--chhhCCCCchH---HHHHHHHHH--HHHHHHH
Confidence 457788899999998885 334455555554 44444322111 112111222 2344555
Q ss_pred HHhCCChHHHHHHHHHHhhccHHHHHHHHHHcC
Q 004361 705 FVSGLPGPASIVIGNGLALSSTAVVLQVLQERG 737 (759)
Q Consensus 705 ~lLGls~~~ALLLGaILSaTSpaVVv~VLkELG 737 (759)
||++++...-+...+++++..+....++|++..
T Consensus 601 Yw~~l~lFqTL~~~~~lg~~t~~~G~r~L~~~a 633 (636)
T PF05817_consen 601 YWLGLNLFQTLPYLAVLGAVTFLSGNRALRELA 633 (636)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 778888888888888888888888888887753
No 116
>PRK11281 hypothetical protein; Provisional
Probab=76.39 E-value=59 Score=41.72 Aligned_cols=103 Identities=20% Similarity=0.273 Sum_probs=46.9
Q ss_pred HHhhhHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCcccccCCCCcchhhHHHHHhh
Q 004361 196 WNNVNVTLDMVHEIVNEECIAKEAVHKATMALSLAEARLQVAIESLQDVKQEDDYPEGSTEDDAKSDGKEEDGLLLAAEN 275 (759)
Q Consensus 196 ~~~v~~~l~~iq~~~~~e~~akeav~~atmalslaearlq~a~e~~~~~~~~~~~~~~s~~~~~~~d~~~~~~~~~~a~~ 275 (759)
..+.+.||+.++++-..+..+++--+ .+.-|.++++-|..-++..+...+++.. +........+=|..+..-+.
T Consensus 62 ~~~l~~tL~~L~qi~~~~~~~~~L~k----~l~~Ap~~l~~a~~~Le~Lk~~~~~~~~--~~~~~~Sl~qLEq~L~q~~~ 135 (1113)
T PRK11281 62 QQDLEQTLALLDKIDRQKEETEQLKQ----QLAQAPAKLRQAQAELEALKDDNDEETR--ETLSTLSLRQLESRLAQTLD 135 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHhhcccccccc--ccccccCHHHHHHHHHHHHH
Confidence 45566666666666555555443322 2333444444455555554443333321 11111112222233334444
Q ss_pred hHHHHHHHHHhhHHHHHHhhhhHHHHHHH
Q 004361 276 DIKECQANLANCETELRRLQSKKEELQKE 304 (759)
Q Consensus 276 di~~~q~~l~~ce~el~~~q~~k~elqke 304 (759)
+..+.|++|+.-+.+|..+|++-+..|+.
T Consensus 136 ~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~ 164 (1113)
T PRK11281 136 QLQNAQNDLAEYNSQLVSLQTQPERAQAA 164 (1113)
T ss_pred HHHHHHHHHHHHHHHHHhhhcchHHHHHH
Confidence 45555555555555555555555555544
No 117
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=76.29 E-value=1e+02 Score=32.86 Aligned_cols=51 Identities=14% Similarity=0.191 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhhcCChhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 004361 659 FGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHFVSGLP 710 (759)
Q Consensus 659 IGLIfLLFlaGLELDl~~LKr~~K~iLvLAilgVLLp~~lVG~al~~lLGls 710 (759)
+|-...-|..-+--+.+.+|++++.++.-...+.++.+ +.++.+.+++|.+
T Consensus 65 LgPAtVALAvPLY~~~~~lk~~~~~Il~~~~~G~~~~~-~s~~~la~~lg~~ 115 (226)
T TIGR00659 65 LGPAVVALAIPLYKQLPQIKKYWKEIILNVAVGSVIAI-ISGTLLALLLGLG 115 (226)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCcC
Confidence 34445555666666788899999877755555555553 3455556677775
No 118
>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=75.54 E-value=23 Score=40.26 Aligned_cols=101 Identities=13% Similarity=0.053 Sum_probs=58.1
Q ss_pred hHHHHHHHHHHHHHHHHhhcCChhHHhh----hhhh--HHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhcc
Q 004361 652 GTKAIAEFGVVFLLFNIGLELSVERLSS----MKKY--VFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSS 725 (759)
Q Consensus 652 iLe~LAEIGLIfLLFlaGLELDl~~LKr----~~K~--iLvLAilgVLLp~~lVG~al~~lLGls~~~ALLLGaILSaTS 725 (759)
....+.+.-+.++.|.+|+|+..+.+.. .++. ++.-++.+|++|.+ +.+++. .| + ...--.|+ =..|+
T Consensus 56 l~~WiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lP~~AAlGGmivPAl-Iy~~~n--~~-~-~~~~GW~I-P~ATD 129 (383)
T PRK14854 56 LMHWINDGLMAIYFLYIGLEIKREIIVGTLSKPSNIITPAIAAFAGLAMPSL-IYLSIN--HD-I-KVINGWAI-PSATD 129 (383)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHH-HHHhhc--cC-C-cccCcccc-ccHHH
Confidence 3455667778899999999987766532 2332 33456777888843 322211 12 1 10111222 23477
Q ss_pred HHHHHHHHHHcCC-CCChhHHHHHHHHHHHHhhc
Q 004361 726 TAVVLQVLQERGE-STSRHGRATFSVLLFQVTLR 758 (759)
Q Consensus 726 paVVv~VLkELGL-LnSe~GRlaLSalVLqDIls 758 (759)
++..+.+|.=.|- +....--..++.+++||+.+
T Consensus 130 IAFAlgvLallG~rvP~~lrvFLlaLAIvDDlgA 163 (383)
T PRK14854 130 IAFTLGILALLGTRVPAKLKLLVITIAIFDDIAA 163 (383)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhh
Confidence 7777777766654 23444455677789999864
No 119
>COG2855 Predicted membrane protein [Function unknown]
Probab=74.86 E-value=39 Score=37.91 Aligned_cols=50 Identities=14% Similarity=0.169 Sum_probs=41.1
Q ss_pred ccccc--hhhHHHHHHHHHHHHHHHHhhcCChhHHhhhhhhHHHHHHHHHHH
Q 004361 645 SIIRH--VHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLV 694 (759)
Q Consensus 645 GlI~~--~eiLe~LAEIGLIfLLFlaGLELDl~~LKr~~K~iLvLAilgVLL 694 (759)
+.+|. .+.+..++.+.+++-|+..|+.+|++.+++.+.+.+.+++..++.
T Consensus 270 ~~iP~~~~~~~~~lst~ll~~aMaAlGL~t~i~~l~~~G~kpl~la~~~~~~ 321 (334)
T COG2855 270 GLIPAEVVSALVTLSTFLLAMAMAALGLTTHIKALKKAGGKPLLLALLLWVF 321 (334)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHcCccHHHHHHHHHHH
Confidence 44543 356788899999999999999999999999998888888776654
No 120
>KOG3826 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=73.99 E-value=3 Score=44.53 Aligned_cols=130 Identities=12% Similarity=0.044 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHHHHhc-----CCCchHHHHHHHHHhhccccc--ccccchhhHHHHHHHHHHHHHHHHhhcCChhHHh
Q 004361 606 VLWLLLASVIFVPIFQKI-----PGGSPVLGYLAAGILIGPYGL--SIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLS 678 (759)
Q Consensus 606 L~LILlaA~LLg~LlrRL-----~gLP~VVGyILAGIILGPsgL--GlI~~~eiLe~LAEIGLIfLLFlaGLELDl~~LK 678 (759)
+.++...+...+.+.+-. .++|+.+|+|++|.++=...+ +.+..+-+...+-.+...+++--.|++++.+.++
T Consensus 102 ~iV~~~lA~~g~~lle~A~~P~~i~l~~aigel~a~fLiiNI~~~~~~~~~~iv~s~l~t~a~~I~~ik~gLgt~~r~~~ 181 (252)
T KOG3826|consen 102 LIVIWGLATDGGFLLELARVPVTIGLPTAIGELLAGFLIINISFVNGAVCAPIVVSPLRTVALTIIKIKAGLGTLPRAPE 181 (252)
T ss_pred eehhhhHhhchHhhHhhccccccccccchHHHHHHHHHheecchhhhceeeeeeehhhhhccchHHHHHhhhcccccchh
Confidence 334445555555555532 346779999999976653321 1111222334556677788888999999999888
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhccHHHHHHHHHH
Q 004361 679 SMKKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSSTAVVLQVLQE 735 (759)
Q Consensus 679 r~~K~iLvLAilgVLLp~~lVG~al~~lLGls~~~ALLLGaILSaTSpaVVv~VLkE 735 (759)
+....-..+++...++..-......++.+..+|.++++.|.+....+....-+-+..
T Consensus 182 nv~~vc~~~~v~~~~~~a~a~~~~S~~~l~~~ii~~~l~g~v~~~i~~~~~r~~~~h 238 (252)
T KOG3826|consen 182 NVLAVCCVLMVLPSIIEASAPAVTSHFLLAGPIIWAFLLGIVIGSILWRFPRPDYQH 238 (252)
T ss_pred hhhHHHhhhhhhhhhhccccHHHHHHHHhccchHHHhccccceeeeecCCccccchh
Confidence 766655555444443332223344567778899999999999988777766655443
No 121
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=73.90 E-value=1.2e+02 Score=35.55 Aligned_cols=16 Identities=25% Similarity=0.229 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHhhh
Q 004361 228 SLAEARLQVAIESLQD 243 (759)
Q Consensus 228 slaearlq~a~e~~~~ 243 (759)
+-+...|+-+...+..
T Consensus 276 ~~~~~~l~d~~~~l~~ 291 (563)
T TIGR00634 276 GNALTEVEEATRELQN 291 (563)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444444433
No 122
>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=72.55 E-value=28 Score=39.70 Aligned_cols=102 Identities=18% Similarity=0.050 Sum_probs=59.5
Q ss_pred hHHHHHHHHHHHHHHHHhhcCChhHHhh---h-hhh--HHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhcc
Q 004361 652 GTKAIAEFGVVFLLFNIGLELSVERLSS---M-KKY--VFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSS 725 (759)
Q Consensus 652 iLe~LAEIGLIfLLFlaGLELDl~~LKr---~-~K~--iLvLAilgVLLp~~lVG~al~~lLGls~~~ALLLGaILSaTS 725 (759)
....+.+.-+.++.|.+|+|+..+.+.. . ++. ++.-++.+|++|.+ +.+++. .|-+. ..--.|+ =..|+
T Consensus 59 l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lPi~AAlGGmivPAl-iy~~~n--~~~~~-~~~GWaI-P~ATD 133 (388)
T PRK09561 59 LLLWINDGLMAVFFLLIGLEVKRELLEGSLASRRQAALPVIAAIGGMLVPAL-IYLLFN--YADPV-TREGWAI-PAATD 133 (388)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhchHHHHH-HHhhee--cCCCc-ccCcccc-ccHHH
Confidence 3455667778899999999998776632 2 232 33456777888843 222211 12110 0011111 23477
Q ss_pred HHHHHHHHHHcCC-CCChhHHHHHHHHHHHHhhc
Q 004361 726 TAVVLQVLQERGE-STSRHGRATFSVLLFQVTLR 758 (759)
Q Consensus 726 paVVv~VLkELGL-LnSe~GRlaLSalVLqDIls 758 (759)
++..+.+|.=.|- +....=...++.+++||+.+
T Consensus 134 IAFalgvlallG~rvP~~LrvFLlaLAIvDDlgA 167 (388)
T PRK09561 134 IAFALGVLALLGSRVPVALKIFLLALAIIDDLGA 167 (388)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhh
Confidence 7777777765553 23444667888999999864
No 123
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=71.70 E-value=37 Score=37.70 Aligned_cols=115 Identities=18% Similarity=0.143 Sum_probs=70.4
Q ss_pred HHHHHHhhcccccccccc---hh-hHHHHHHHHHHHHHHHHhhcCChhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 004361 632 YLAAGILIGPYGLSIIRH---VH-GTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHFVS 707 (759)
Q Consensus 632 yILAGIILGPsgLGlI~~---~e-iLe~LAEIGLIfLLFlaGLELDl~~LKr~~K~iLvLAilgVLLp~~lVG~al~~lL 707 (759)
-++.|.++..+..+...- .. .+..=+.--+.+++|..|-.+|++...+.-++...+-+.-+++.+ ++|++...++
T Consensus 18 Pl~lga~inTf~P~~l~iG~fT~alf~~g~~~il~~~~~~~Ga~I~~k~~~~~l~kg~~l~~~K~~~~~-~~g~~~~~~~ 96 (312)
T PRK12460 18 PLLIGALINTFFPQALEIGGFTTALFKTGAAPLLGAFLLCMGAQISLKAAPQALLKGGVLTITKLGVAI-VIGLLVGKFF 96 (312)
T ss_pred HHHHHHHHHhccCcchhhCcccHHHHhcChHHHHHHHHHHhcCeeeccccchhhhhhhhhhhHHHHHHH-HHHHHHHHHc
Confidence 467788877544433211 11 111122234567889999999998876655555555455555554 4666666666
Q ss_pred CCC---hHHHHHHHHHHhhccHHHHHHHHHHcCCCCChhHHHHH
Q 004361 708 GLP---GPASIVIGNGLALSSTAVVLQVLQERGESTSRHGRATF 748 (759)
Q Consensus 708 Gls---~~~ALLLGaILSaTSpaVVv~VLkELGLLnSe~GRlaL 748 (759)
|.. ....+.+-++++.|.-++=..+..++|- +++.|-..+
T Consensus 97 g~~g~~Gls~laiiaa~~~~Ng~ly~al~~~yG~-~~d~gA~~~ 139 (312)
T PRK12460 97 GAEGIFGLSGLAIVAAMSNSNGGLYAALMGEFGD-ERDVGAISI 139 (312)
T ss_pred CcccccchHHHHHHHHHhcCcHHHHHHHHHHcCC-HhhhhHHhh
Confidence 532 3455666667777888888888999884 455554433
No 124
>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=71.56 E-value=29 Score=39.62 Aligned_cols=102 Identities=15% Similarity=0.035 Sum_probs=59.6
Q ss_pred hHHHHHHHHHHHHHHHHhhcCChhHHhh----hhhh--HHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhcc
Q 004361 652 GTKAIAEFGVVFLLFNIGLELSVERLSS----MKKY--VFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSS 725 (759)
Q Consensus 652 iLe~LAEIGLIfLLFlaGLELDl~~LKr----~~K~--iLvLAilgVLLp~~lVG~al~~lLGls~~~ALLLGaILSaTS 725 (759)
....+.+.-+.++.|.+|+|+..+.+.. .++. ++.-++.+|++|.+ +.+++. .|-+. ..--.|+ =..|+
T Consensus 59 l~~wiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lPi~AAlGGmivPAl-Iy~~~n--~g~~~-~~~GWgI-PmATD 133 (389)
T PRK09560 59 LLHWINDGLMAVFFLLVGLEIKRELLEGQLSSWQQRILPAIAAVGGMVVPAL-IYAAFN--YNNPE-TLRGWAI-PAATD 133 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHH-HHheee--cCCCc-ccCcccc-ccHHH
Confidence 3455667778899999999998766542 2332 33456777888743 222211 12110 0111121 23477
Q ss_pred HHHHHHHHHHcCC-CCChhHHHHHHHHHHHHhhc
Q 004361 726 TAVVLQVLQERGE-STSRHGRATFSVLLFQVTLR 758 (759)
Q Consensus 726 paVVv~VLkELGL-LnSe~GRlaLSalVLqDIls 758 (759)
++..+.+|.=.|- +....-...++.+++||+.+
T Consensus 134 IAFAlgvL~llG~rvP~~Lr~FLlaLAIvDDlgA 167 (389)
T PRK09560 134 IAFALGVLALLGKRVPVSLKVFLLALAIIDDLGA 167 (389)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhh
Confidence 7777777775553 23444667888999999864
No 125
>PRK12472 hypothetical protein; Provisional
Probab=71.39 E-value=94 Score=36.67 Aligned_cols=100 Identities=20% Similarity=0.191 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCcccccCCCCcchhhHHHHHhhhHHHHHHHHHhhHHHHHH
Q 004361 214 CIAKEAVHKATMALSLAEARLQVAIESLQDVKQEDDYPEGSTEDDAKSDGKEEDGLLLAAENDIKECQANLANCETELRR 293 (759)
Q Consensus 214 ~~akeav~~atmalslaearlq~a~e~~~~~~~~~~~~~~s~~~~~~~d~~~~~~~~~~a~~di~~~q~~l~~ce~el~~ 293 (759)
.-++-.+.++-.+..-|+++|..|-..|++++-+ ++-.-
T Consensus 221 ~~~~~~l~~~e~~~~~a~~~l~~adk~l~~a~~d--------------------~~~~~--------------------- 259 (508)
T PRK12472 221 APLKASLRKLERAKARADAELKRADKALAAAKTD--------------------EAKAR--------------------- 259 (508)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--------------------hhhhh---------------------
Confidence 3455556666677777888888888888885411 11111
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHH
Q 004361 294 LQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVANIMLLAEQAVAFEIEATQRVNDAEIAL 354 (759)
Q Consensus 294 ~q~~k~elqkev~~l~e~ae~aq~~a~kaeedvanim~laeqava~e~ea~q~~ndaeial 354 (759)
...+|..+-..+...+..++.|..+|...+..++..--.|..|=+.--|++.-.+||..++
T Consensus 260 a~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~a~~a~l~~ 320 (508)
T PRK12472 260 AEERQQKAAQQAAEAATQLDTAKADAEAKRAAAAATKEAAKAAAAKKAETAKAATDAKLAL 320 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 1134445555566666777778888888888888877788888777778888888888776
No 126
>PRK04863 mukB cell division protein MukB; Provisional
Probab=71.07 E-value=3.2e+02 Score=36.47 Aligned_cols=22 Identities=14% Similarity=0.214 Sum_probs=17.9
Q ss_pred cHHHHHHHHHHHHHHHHHhhhh
Q 004361 150 TDELRELLMNAMKELEVAQLNS 171 (759)
Q Consensus 150 ~~~l~e~l~~a~~ele~a~~ns 171 (759)
++.|++.|..=++-||.-+.+.
T Consensus 232 i~~m~~~l~~~r~t~~~~~~tq 253 (1486)
T PRK04863 232 FQDMEAALRENRMTLEAIRVTQ 253 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHhCc
Confidence 7789999988888888777664
No 127
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=70.95 E-value=10 Score=41.39 Aligned_cols=80 Identities=18% Similarity=0.235 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHhc----------CCCchHH-HHHHHHHhhcccccccccc--hhhHHHHHHHHHHHHHHHHhh
Q 004361 604 FDVLWLLLASVIFVPIFQKI----------PGGSPVL-GYLAAGILIGPYGLSIIRH--VHGTKAIAEFGVVFLLFNIGL 670 (759)
Q Consensus 604 lqL~LILlaA~LLg~LlrRL----------~gLP~VV-GyILAGIILGPsgLGlI~~--~eiLe~LAEIGLIfLLFlaGL 670 (759)
....++..+..++.++.+|- ...|.++ |++++-++ ... +.+++ ...+..++.+.+.+-|+..|+
T Consensus 211 ~Rv~lL~pv~~~l~~~~~~~~~~~~~~~~~~~~P~FvlgFl~~~~l-~s~--~~~~~~~~~~~~~~s~~~~~~A~aaiGl 287 (305)
T PF03601_consen 211 TRVLLLGPVVLVLALFWARRQEKSSGKSKKVSFPWFVLGFLAASLL-NSL--GLLPAAVVSALKSLSKWLFALAMAAIGL 287 (305)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccCccCcCHHHHHHHHHHHH-HHH--hhhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444455555444432 1456554 44444443 332 23332 356788999999999999999
Q ss_pred cCChhHHhhhhhhHHH
Q 004361 671 ELSVERLSSMKKYVFG 686 (759)
Q Consensus 671 ELDl~~LKr~~K~iLv 686 (759)
++|++.+++.+.+.+.
T Consensus 288 ~~~~~~l~~~G~kpl~ 303 (305)
T PF03601_consen 288 STNFKDLKQVGWKPLL 303 (305)
T ss_pred cCcHHHHHhcCcccee
Confidence 9999999998877654
No 128
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=70.77 E-value=39 Score=36.19 Aligned_cols=51 Identities=20% Similarity=0.339 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhhcCChhHHhhhhh--hHHHHHHH-HH-HHHHHHHHHHHHHHhCCC
Q 004361 658 EFGVVFLLFNIGLELSVERLSSMKK--YVFGLGSA-QV-LVTAVVVGLVAHFVSGLP 710 (759)
Q Consensus 658 EIGLIfLLFlaGLELDl~~LKr~~K--~iLvLAil-gV-LLp~~lVG~al~~lLGls 710 (759)
-..+.++||..|+.++++.+++..+ +...++++ .+ +.|. +++++..+++.+
T Consensus 11 ~~~l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Pl--la~~l~~~~~l~ 65 (286)
T TIGR00841 11 LILLFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPL--TGFLLAKVFKLP 65 (286)
T ss_pred HHHHHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHH--HHHHHHHHhCCC
Confidence 3448899999999999999987554 22323332 33 3453 344444556665
No 129
>TIGR00773 NhaA Na+/H+ antiporter NhaA. These proteins are members of the NhaA Na+:H+ Antiporter (NhaA) Family (TC. 2.A.33). The Escherichia coli NhaA protein probably functions in the regulation of the internal pH when the external pH is alkaline. It also uses the H+ gradient to expel Na+ from the cell. Its activity is highly pH dependent. Only the E. coli protein is functionally and structurally well characterized.
Probab=70.52 E-value=38 Score=38.45 Aligned_cols=102 Identities=15% Similarity=0.040 Sum_probs=59.3
Q ss_pred hHHHHHHHHHHHHHHHHhhcCChhHHhh---h-hhh--HHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhcc
Q 004361 652 GTKAIAEFGVVFLLFNIGLELSVERLSS---M-KKY--VFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSS 725 (759)
Q Consensus 652 iLe~LAEIGLIfLLFlaGLELDl~~LKr---~-~K~--iLvLAilgVLLp~~lVG~al~~lLGls~~~ALLLGaILSaTS 725 (759)
....+.+.-+.++.|.+|+|+..+.+.. . +|. ++.-++.+|++|.+ +.+.+. .|-+. ..--.|+ =..|+
T Consensus 52 l~~wiNDgLMaiFFf~vGlEiKrE~~~GeL~~~~~a~lP~~aA~GGm~vPa~-iy~~~n--~~~~~-~~~GW~I-P~ATD 126 (373)
T TIGR00773 52 LLHWINDGLMAVFFLLIGLEVKRELLEGALSSLRQAIFPVIAAIGGMIAPAL-IYLAFN--ANDPI-TREGWAI-PAATD 126 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHH-HHhhee--cCCCc-ccCcccc-ccHHH
Confidence 4455667778899999999998776542 2 332 33456777888843 222211 12110 0111111 23477
Q ss_pred HHHHHHHHHHcCC-CCChhHHHHHHHHHHHHhhc
Q 004361 726 TAVVLQVLQERGE-STSRHGRATFSVLLFQVTLR 758 (759)
Q Consensus 726 paVVv~VLkELGL-LnSe~GRlaLSalVLqDIls 758 (759)
++....+|.=.|- +....-...++.+++||+.+
T Consensus 127 iAFalgvlallG~~vP~~lr~FLl~LAIvDDlga 160 (373)
T TIGR00773 127 IAFALGVMALLGKRVPLALKIFLLALAIIDDLGA 160 (373)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhh
Confidence 7777777766654 34444667888999999864
No 130
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=69.36 E-value=2.6e+02 Score=33.64 Aligned_cols=32 Identities=16% Similarity=0.237 Sum_probs=16.5
Q ss_pred cccCCCcc--eeeeec----CCCCccc--cccccCCCccc
Q 004361 58 SYAGCSKS--SLVFRG----NSDANLW--GLYTCKSLFCS 89 (759)
Q Consensus 58 ~~~~~~~~--~~~~~~----~~~~~~~--~~~~~~~~~~~ 89 (759)
.|..++.. .|.|.+ ++++.+| ...+..+.+++
T Consensus 64 ~~~~~s~~~~~V~F~ayyLPk~~~e~YqfcYv~~~g~V~G 103 (546)
T PF07888_consen 64 NYVEGSAVNCQVQFQAYYLPKDDDEFYQFCYVDQKGEVRG 103 (546)
T ss_pred cccCCCccceEEEECcccCCCCCCCeEEEEEECCCccEEE
Confidence 45555544 567884 4445554 22344555554
No 131
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=68.88 E-value=1.2e+02 Score=34.32 Aligned_cols=125 Identities=16% Similarity=0.163 Sum_probs=66.9
Q ss_pred CCchHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHhhcCChhHHhhhhhhHHHHHHHHHHHHH-HHHHHHH
Q 004361 625 GGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTA-VVVGLVA 703 (759)
Q Consensus 625 gLP~VVGyILAGIILGPsgLGlI~~~eiLe~LAEIGLIfLLFlaGLELDl~~LKr~~K~iLvLAilgVLLp~-~lVG~al 703 (759)
+...-+|-.++||++..+-+.-- ..+..-.+.+...+++.-.+|+-+|+..+.+.... +++.+.++++. -+..+.+
T Consensus 247 gvsfaLGAffaGMvL~eselshr-aa~~slpLrdaFaVlFFvsVGmlf~P~~l~~~pl~--vlatllii~~gKs~aaf~i 323 (408)
T COG4651 247 GVSFALGAFFAGMVLAESELSHR-AAEDSLPLRDAFAVLFFVSVGMLFDPMILIQQPLA--VLATLLIILFGKSVAAFFI 323 (408)
T ss_pred ccchhHHHHHHHHHhcchhhhHH-HHHhccCHHHHHHHHHHHHhhhhcCcHHhhcchHH--HHHHHHHHHhhhHHHHHHH
Confidence 45555555556665554422110 01122245566666677789999999887654433 23333333221 1122333
Q ss_pred HHHhCCChHHHHHHHHHHhhc-cHHHH-HHHHHHcCCCCChhHH-HHHHHHHH
Q 004361 704 HFVSGLPGPASIVIGNGLALS-STAVV-LQVLQERGESTSRHGR-ATFSVLLF 753 (759)
Q Consensus 704 ~~lLGls~~~ALLLGaILSaT-SpaVV-v~VLkELGLLnSe~GR-laLSalVL 753 (759)
...||.+...++.+++.++-. -+..+ ..+=-.+++++ +.|| ++++.+++
T Consensus 324 vr~Fg~~~~TaLtis~SLaqigEFsfIlaGLgi~l~llp-~~gr~Lvlagail 375 (408)
T COG4651 324 VRAFGHPVRTALTISASLAQIGEFSFILAGLGIKLNLLP-EAGRDLVLAGAIL 375 (408)
T ss_pred HHHhCCcchHHHHHHHHHHhhhhHHHHHHHHhhhhccCc-HHHHHHHHHHHHH
Confidence 345799988888887777643 23333 33335677777 5555 45555544
No 132
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=68.84 E-value=67 Score=36.25 Aligned_cols=54 Identities=22% Similarity=0.369 Sum_probs=36.9
Q ss_pred HHHHHHHHHhhcccccc---ccc--chhhHHHHHHHHHHHHHHHHhhcCChhHHhhhhh
Q 004361 629 VLGYLAAGILIGPYGLS---IIR--HVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKK 682 (759)
Q Consensus 629 VVGyILAGIILGPsgLG---lI~--~~eiLe~LAEIGLIfLLFlaGLELDl~~LKr~~K 682 (759)
+.-.+++|+.+|-+..+ .+. ....++.--.+|+++.|+=.=+++|++.+++..+
T Consensus 20 v~l~i~~Gi~lG~~~p~~~~~l~~~~~~~~sipiai~L~~MmYP~m~ki~~~~~~~v~k 78 (342)
T COG0798 20 VFLAIAIGILLGVHFPGLAQLLGKLEFGGVSIPIAIGLILMMYPPMLKIDFEELKNVFK 78 (342)
T ss_pred HHHHHHHHHHHHhcccchhhhcccceeCceehhHHHHHHHHHhHHHhcCCHHHHHHHHh
Confidence 33467788888855444 222 1233455667889999998889999999987543
No 133
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=67.60 E-value=1.2e+02 Score=32.25 Aligned_cols=20 Identities=25% Similarity=0.232 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004361 220 VHKATMALSLAEARLQVAIE 239 (759)
Q Consensus 220 v~~atmalslaearlq~a~e 239 (759)
++.|...+..|+..++....
T Consensus 117 ~~~a~~~l~~a~~~~~r~~~ 136 (334)
T TIGR00998 117 LEQAREKLLQAELDLRRRVP 136 (334)
T ss_pred HHHHHHHHHHhHHHHHHHHH
Confidence 33444444455555555443
No 134
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=67.43 E-value=1.6e+02 Score=33.25 Aligned_cols=64 Identities=28% Similarity=0.404 Sum_probs=43.2
Q ss_pred HhhhhhHHHHH-HHHHHHHHHhchhHHHHHHHhhhHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 004361 167 AQLNSTMFEEK-AQRISEAAIALKDEAANAWNNVNVTLDMVHEIVNEECIAKEAVHKATMALSLAEARLQVAIESLQDVK 245 (759)
Q Consensus 167 a~~ns~~fe~k-aq~ise~ai~l~d~a~~a~~~v~~~l~~iq~~~~~e~~akeav~~atmalslaearlq~a~e~~~~~~ 245 (759)
.++|=|.|+.| ||+|++. +-++-..--|.+| |--+++.+.-|.-.+.-||+|++-|.-.|-.-|
T Consensus 142 ~~v~V~aF~p~eaq~Iaqa---ilkqse~lIN~Ls------------~rAr~dt~r~Ae~eV~~~eerv~kAs~~L~~yr 206 (372)
T COG3524 142 STVNVTAFDPKEAQKIAQA---ILKQSEKLINQLS------------ERARRDTVRFAEEEVQKAEERVKKASNDLTDYR 206 (372)
T ss_pred eEEEEeecChhhHHHHHHH---HHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 56777888864 8998874 3344444444444 344556666666777788899998888887755
No 135
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=67.00 E-value=2.7e+02 Score=32.99 Aligned_cols=158 Identities=20% Similarity=0.223 Sum_probs=91.7
Q ss_pred hHHHHHHHhhhHhHHHHHHHHhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhhccCCCCCCCCcccccCCCCcc
Q 004361 190 DEAANAWNNVNVTLDMVHEIVNEECIAKEAVHKATM----ALSLAEARLQVAIESLQDVKQEDDYPEGSTEDDAKSDGKE 265 (759)
Q Consensus 190 d~a~~a~~~v~~~l~~iq~~~~~e~~akeav~~atm----alslaearlq~a~e~~~~~~~~~~~~~~s~~~~~~~d~~~ 265 (759)
|++...-..++.-+|.+.+++..|..|+.-|.+... .|.-++...+....-++-.++.+.-.+.
T Consensus 278 ~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~------------ 345 (569)
T PRK04778 278 DEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNES------------ 345 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCch------------
Confidence 455566667788899999999999999988876544 3455555555555555555444332221
Q ss_pred hhhHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 004361 266 EDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVANIMLLAEQAVAFEIEATQ 345 (759)
Q Consensus 266 ~~~~~~~a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l~e~ae~aq~~a~kaeedvanim~laeqava~e~ea~q 345 (759)
|-+.....++++.+++..+..++..+......-.+++++...+.+.-+..+..-.+-.+.+ +..-..|.+|-+
T Consensus 346 e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l-------~~Lrk~E~eAr~ 418 (569)
T PRK04778 346 ELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEML-------QGLRKDELEARE 418 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 2355556666666666666666655555555555555555555444433333222222222 233446677777
Q ss_pred hcccHHHHHHHHHHhhcCCCC
Q 004361 346 RVNDAEIALQRAEKSLSNSSV 366 (759)
Q Consensus 346 ~~ndaeial~ka~k~~~~~~~ 366 (759)
.+......|.....-+..++.
T Consensus 419 kL~~~~~~L~~ikr~l~k~~l 439 (569)
T PRK04778 419 KLERYRNKLHEIKRYLEKSNL 439 (569)
T ss_pred HHHHHHHHHHHHHHHHHHcCC
Confidence 766666666665555544443
No 136
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=66.97 E-value=45 Score=28.96 Aligned_cols=51 Identities=20% Similarity=0.341 Sum_probs=44.1
Q ss_pred hhhHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 004361 266 EDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQ 316 (759)
Q Consensus 266 ~~~~~~~a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l~e~ae~aq 316 (759)
|--|-...+++++.|++...+++..|..-..+-.+|+.||.+|.+-.+..+
T Consensus 9 EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 9 EIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445667789999999999999999999999999999999999988766543
No 137
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=66.72 E-value=1.5e+02 Score=32.22 Aligned_cols=22 Identities=14% Similarity=0.111 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh
Q 004361 151 DELRELLMNAMKELEVAQLNST 172 (759)
Q Consensus 151 ~~l~e~l~~a~~ele~a~~ns~ 172 (759)
++++.-|..|+.+++.|+.+-.
T Consensus 82 ~~~~~~l~~a~a~l~~a~a~l~ 103 (346)
T PRK10476 82 RPYELTVAQAQADLALADAQIM 103 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888887775443
No 138
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=66.14 E-value=96 Score=33.40 Aligned_cols=93 Identities=19% Similarity=0.240 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHH--HHHHHHHHhchhHHHHHHHhhhHhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 004361 152 ELRELLMNAMKELEVAQLNSTMFEEKA--QRISEAAIALKDEAANAWNNVNVTLDMVHEIVNEECIAKEAVHKATMALSL 229 (759)
Q Consensus 152 ~l~e~l~~a~~ele~a~~ns~~fe~ka--q~ise~ai~l~d~a~~a~~~v~~~l~~iq~~~~~e~~akeav~~atmalsl 229 (759)
++..-|..+..+++.+..+...++... ++|...-..+ ..+...-......++..+....+-.+.+.....+...+..
T Consensus 78 ~~~~~l~~~~a~l~~~~~~l~~~~~~~~~~~i~~~~~~l-~~ak~~l~~a~~~~~r~~~L~~~g~vs~~~~~~~~~~~~~ 156 (331)
T PRK03598 78 PYENALMQAKANVSVAQAQLDLMLAGYRDEEIAQARAAV-KQAQAAYDYAQNFYNRQQGLWKSRTISANDLENARSSRDQ 156 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 445555566666655555433333211 1221111111 1222223333344555566666667777777777777777
Q ss_pred HHHHHHHHHHHhhhhc
Q 004361 230 AEARLQVAIESLQDVK 245 (759)
Q Consensus 230 aearlq~a~e~~~~~~ 245 (759)
|+++++.|...+...+
T Consensus 157 a~~~~~~a~~~~~~~~ 172 (331)
T PRK03598 157 AQATLKSAQDKLSQYR 172 (331)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777777666543
No 139
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=66.02 E-value=1.8e+02 Score=30.71 Aligned_cols=75 Identities=13% Similarity=0.103 Sum_probs=41.6
Q ss_pred HHHHHHHHHhhcCChhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhccHHHHHHHHHHcC
Q 004361 660 GVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSSTAVVLQVLQERG 737 (759)
Q Consensus 660 GLIfLLFlaGLELDl~~LKr~~K~iLvLAilgVLLp~~lVG~al~~lLGls~~~ALLLGaILSaTSpaVVv~VLkELG 737 (759)
|-...-|..-+-=.++.+|++++.++.-.+.+.++.+ +.++.+.+++|.+.. +..+.+-=...+|+.+.+-+..|
T Consensus 56 gPatVALAvPLY~~~~~l~~~~~~il~~~~~g~~~~~-~~~~~l~~~lgl~~~--~~~Sl~pkSVTtpiAi~is~~iG 130 (215)
T PF04172_consen 56 GPATVALAVPLYRQRRLLKKNWIPILVGVLVGSLVSI-FSAVLLARLLGLSPE--IILSLAPKSVTTPIAIEISEQIG 130 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCcCHH--HHHHHHHHHhhHHHHHHHHHHhC
Confidence 3334444555555678899998887765566665553 345555667777532 22222233344555555555554
No 140
>PRK02224 chromosome segregation protein; Provisional
Probab=65.85 E-value=3.2e+02 Score=33.48 Aligned_cols=36 Identities=19% Similarity=0.351 Sum_probs=23.4
Q ss_pred cHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 004361 150 TDELRELLMNAMKELEVAQLNSTMFEEKAQRISEAA 185 (759)
Q Consensus 150 ~~~l~e~l~~a~~ele~a~~ns~~fe~kaq~ise~a 185 (759)
+++|.+++.....+++.+.-.-..+++++.++-+.+
T Consensus 518 ~~~l~~~~~~~~e~le~~~~~~~~l~~e~~~l~~~~ 553 (880)
T PRK02224 518 REDLEELIAERRETIEEKRERAEELRERAAELEAEA 553 (880)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 455666666666777777777677777766664444
No 141
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=65.71 E-value=31 Score=39.76 Aligned_cols=115 Identities=16% Similarity=0.218 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhccccccccc---ch--hhHHHHHHHHHHHHHHHHhhcCChhHHhhhhh
Q 004361 608 WLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIR---HV--HGTKAIAEFGVVFLLFNIGLELSVERLSSMKK 682 (759)
Q Consensus 608 LILlaA~LLg~LlrRL~gLP~VVGyILAGIILGPsgLGlI~---~~--eiLe~LAEIGLIfLLFlaGLELDl~~LKr~~K 682 (759)
.+-++++++-.++++. ++-|+= |+++|+.+--+.+=++. +. ..--.++..+.+.++.. -...+.+.+|
T Consensus 306 ~LTF~~fflfE~~~~~-~iHpiQ-Y~LVGlAl~lFYlLLLSlSEhi~F~~AYliAa~a~i~Li~~-----Y~~~vl~~~k 378 (430)
T PF06123_consen 306 GLTFLAFFLFELLSKL-RIHPIQ-YLLVGLALVLFYLLLLSLSEHIGFNLAYLIAALACIGLISL-----YLSSVLKSWK 378 (430)
T ss_pred HHHHHHHHHHHHHhcC-cccHHH-HHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHH-----HHHHHHhcch
Confidence 3445556666667776 555554 99999977654322221 11 11123333333322211 1233445566
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhccHHHHHHHHHH
Q 004361 683 YVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSSTAVVLQVLQE 735 (759)
Q Consensus 683 ~iLvLAilgVLLp~~lVG~al~~lLGls~~~ALLLGaILSaTSpaVVv~VLkE 735 (759)
..+.++.+ +.. +=|+ ++.++. .--.|+++|.++.....++++-+-+.
T Consensus 379 ~~~~~~~~--L~~--LY~~-Ly~lLq-~EdyALL~GSl~LF~iLa~vM~~TRk 425 (430)
T PF06123_consen 379 RGLIFAGL--LAA--LYGF-LYVLLQ-SEDYALLMGSLLLFIILALVMYLTRK 425 (430)
T ss_pred HHHHHHHH--HHH--HHHH-HHHHHH-hhhHHHHHHHHHHHHHHHHHHheeec
Confidence 55544332 111 1111 112222 23577888888887777777655443
No 142
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=65.14 E-value=1.8e+02 Score=30.23 Aligned_cols=48 Identities=13% Similarity=0.206 Sum_probs=33.9
Q ss_pred cHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhchhHHHHHHH
Q 004361 150 TDELRELLMNAMKELEVAQLNSTMFEEKAQRISEAAIALKDEAANAWN 197 (759)
Q Consensus 150 ~~~l~e~l~~a~~ele~a~~ns~~fe~kaq~ise~ai~l~d~a~~a~~ 197 (759)
+.++++-|.+++..|..+......+|.+...+...+=-+.+.|..|-.
T Consensus 33 irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~ 80 (219)
T TIGR02977 33 IQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALS 80 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777788888887777777778887777766666666665555543
No 143
>PF01889 DUF63: Membrane protein of unknown function DUF63; InterPro: IPR002749 These proteins of unknown function are found in archaebacteria and are probably transmembrane proteins.
Probab=65.02 E-value=1.7e+02 Score=32.06 Aligned_cols=41 Identities=27% Similarity=0.232 Sum_probs=24.3
Q ss_pred HHHHHHHhhccHHHHHHHHHH--cCCCCChhHHHHHHHHHHHH
Q 004361 715 IVIGNGLALSSTAVVLQVLQE--RGESTSRHGRATFSVLLFQV 755 (759)
Q Consensus 715 LLLGaILSaTSpaVVv~VLkE--LGLLnSe~GRlaLSalVLqD 755 (759)
+.+...++...++++.-+++. .+....+.|..++-+-++|-
T Consensus 146 ~~~v~~~a~~~t~~~~~~~~~~~~~~~~~~~~~~vv~aH~lDa 188 (273)
T PF01889_consen 146 LLIVLGLATIATALVWLLLRRFKVNILTDPLGLLVVFAHLLDA 188 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhhccchhHHHHHHHHHhH
Confidence 334444455555555555544 45567777887777776664
No 144
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=64.59 E-value=23 Score=36.91 Aligned_cols=16 Identities=38% Similarity=0.592 Sum_probs=6.6
Q ss_pred CCchHHHHHHHHHhhc
Q 004361 625 GGSPVLGYLAAGILIG 640 (759)
Q Consensus 625 gLP~VVGyILAGIILG 640 (759)
+.++++|-.++|++++
T Consensus 226 g~s~~lgaf~aGl~~~ 241 (273)
T TIGR00932 226 GLSMALGAFLAGVVLS 241 (273)
T ss_pred CCcHHHHHHHHHHHHc
Confidence 3444444444444443
No 145
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=64.08 E-value=61 Score=38.35 Aligned_cols=61 Identities=16% Similarity=0.210 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHhhcccccccccc------hhhHHHHHHHHHHHHHHHHhhcC
Q 004361 611 LASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRH------VHGTKAIAEFGVVFLLFNIGLEL 672 (759)
Q Consensus 611 laA~LLg~LlrRL~gLP~VVGyILAGIILGPsgLGlI~~------~eiLe~LAEIGLIfLLFlaGLEL 672 (759)
+++.+...+...+ +...+++.+++|+++|.+....+.+ ....+.++.+.-.+++...|+.+
T Consensus 245 ~~~yl~Y~lAE~l-~~SGiLAvv~aGl~~~~y~~~n~s~~~~~~~~~f~~~ls~l~e~~IFvlLGl~l 311 (559)
T TIGR00840 245 LISYLSYLFAETL-HLSGILALIFCGITMKKYVEANMSRRSQTTIKYFMKMLSSLSETLIFIFLGVSL 311 (559)
T ss_pred HHHHHHHHHHHHh-ccchHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344455555 6677777788888888764333322 13556777776677777888865
No 146
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=63.76 E-value=36 Score=37.52 Aligned_cols=50 Identities=28% Similarity=0.358 Sum_probs=39.8
Q ss_pred CCcchhhHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHH
Q 004361 262 DGKEEDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEV 311 (759)
Q Consensus 262 d~~~~~~~~~~a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l~e~ 311 (759)
++.-....+..+++++.+.++.|.+++.+|..++.+..+|+++.+.....
T Consensus 215 ~V~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e 264 (344)
T PF12777_consen 215 EVEPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKE 264 (344)
T ss_dssp CCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667788888888888888888888888888888888888887765433
No 147
>PHA02562 46 endonuclease subunit; Provisional
Probab=63.69 E-value=1.2e+02 Score=34.73 Aligned_cols=32 Identities=3% Similarity=0.203 Sum_probs=13.3
Q ss_pred HHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHH
Q 004361 204 DMVHEIVNEEC-IAKEAVHKATMALSLAEARLQ 235 (759)
Q Consensus 204 ~~iq~~~~~e~-~akeav~~atmalslaearlq 235 (759)
..+++...+.. .+++.++...+-++..+.++.
T Consensus 166 ~~~~~~~k~~~~e~~~~i~~l~~~i~~l~~~i~ 198 (562)
T PHA02562 166 SEMDKLNKDKIRELNQQIQTLDMKIDHIQQQIK 198 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444 334444444444444333333
No 148
>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH. NhaA is also believed to be responsible for adaptation to alkaline pH when sodium is available. NhaA is one of the three known sodium ion/proton antiporters in Escherichia coli along with NhaB and ChaA, though there are other mechanisms for Na+ extrusion such as NDH-I complicating the determination of the precise roles of each of the transporters [].; GO: 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane; PDB: 3FI1_A 1ZCD_A.
Probab=63.61 E-value=17 Score=41.21 Aligned_cols=102 Identities=19% Similarity=0.123 Sum_probs=57.4
Q ss_pred hhHHHHHHHHHHHHHHHHhhcCChhHHhh----hhhh--HHHHHHHHHHHHHHHHHHHHHHHhCCChH-HHHHHHHHHhh
Q 004361 651 HGTKAIAEFGVVFLLFNIGLELSVERLSS----MKKY--VFGLGSAQVLVTAVVVGLVAHFVSGLPGP-ASIVIGNGLAL 723 (759)
Q Consensus 651 eiLe~LAEIGLIfLLFlaGLELDl~~LKr----~~K~--iLvLAilgVLLp~~lVG~al~~lLGls~~-~ALLLGaILSa 723 (759)
.....+.+.-+.++.|.+|+|+..+.+.. .+|. ++.-++.+|++|.+ +. ..+..... ..--.|+ -+.
T Consensus 54 ~l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lP~~AAlGGm~vPal-Iy----l~~n~~~~~~~~GW~I-P~A 127 (378)
T PF06965_consen 54 SLHHWINDGLMAIFFFVVGLEIKRELLVGELSSPRKAALPIIAALGGMLVPAL-IY----LAFNAGGPEAAHGWAI-PMA 127 (378)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHH-HH----GGG--SSTTHHHHTSS-SS-
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHhCCCCCChhhhhhHHHHHHhcchHHHH-HH----heeecCCCCcCceEEe-ccc
Confidence 34456677778899999999998766532 2222 33456677777743 22 22222111 1111222 245
Q ss_pred ccHHHHHHHHHHcCCC-CChhHHHHHHHHHHHHhhc
Q 004361 724 SSTAVVLQVLQERGES-TSRHGRATFSVLLFQVTLR 758 (759)
Q Consensus 724 TSpaVVv~VLkELGLL-nSe~GRlaLSalVLqDIls 758 (759)
|+++..+.+|.=.|-. ....-...++.+++||+.+
T Consensus 128 TDIAFAlgvlal~G~rvP~~lrvFLlaLAIvDDlga 163 (378)
T PF06965_consen 128 TDIAFALGVLALLGKRVPASLRVFLLALAIVDDLGA 163 (378)
T ss_dssp --HHHHHHHHHSS-SSS-SSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhh
Confidence 8888888888766642 2334578888999999864
No 149
>PRK12704 phosphodiesterase; Provisional
Probab=63.39 E-value=3.1e+02 Score=32.46 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=9.8
Q ss_pred HHHHhhhHHHHHHHHHhhHHHHHHh
Q 004361 270 LLAAENDIKECQANLANCETELRRL 294 (759)
Q Consensus 270 ~~~a~~di~~~q~~l~~ce~el~~~ 294 (759)
|..-++++..-+.+|..-+.+|..+
T Consensus 105 Lekke~eL~~re~~Le~re~eLe~~ 129 (520)
T PRK12704 105 LEKREEELEKKEKELEQKQQELEKK 129 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444344444443333333
No 150
>COG3329 Predicted permease [General function prediction only]
Probab=62.49 E-value=99 Score=34.84 Aligned_cols=108 Identities=21% Similarity=0.236 Sum_probs=49.8
Q ss_pred chHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHhhcCChhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004361 627 SPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHFV 706 (759)
Q Consensus 627 P~VVGyILAGIILGPsgLGlI~~~eiLe~LAEIGLIfLLFlaGLELDl~~LKr~~K~iLvLAilgVLLp~~lVG~al~~l 706 (759)
.|.+.+.+.|+++--..-.+.-+ +-+.+.-..++|+-+|++=-.+....+-...+.-...++.+.+ ++.++.+++
T Consensus 17 sP~llFf~~Gmlia~~ksdl~iP----~~i~~~lslyLL~aIG~kGGveir~snl~a~v~~~~~~~aL~~-li~~ia~f~ 91 (372)
T COG3329 17 SPTLLFFILGMLIAAFKSDLEIP----EAIYQALSLYLLLAIGFKGGVEIRNSNLTAMVLPVALGVALGF-LIVFIAYFL 91 (372)
T ss_pred cchHHHHHHHHHHHHHhccccCc----hHHHHHHHHHHHHHHhcccceeeecCCcchhHHHHHHHHHHHH-HHHHHHHHH
Confidence 34445788888887544333222 2334444555666665543322111122222222223333332 222222222
Q ss_pred ----hCCChHHHHHHHHHHhhcc---HHHHHHHHHHcCCC
Q 004361 707 ----SGLPGPASIVIGNGLALSS---TAVVLQVLQERGES 739 (759)
Q Consensus 707 ----LGls~~~ALLLGaILSaTS---paVVv~VLkELGLL 739 (759)
.+.....+..++.....+| .+..+..|++.|+.
T Consensus 92 l~kl~~vdtvdaaA~ag~yGsvS~~Tfaaa~t~Lee~gia 131 (372)
T COG3329 92 LRKLPKVDTVDAAATAGTYGSVSAVTFAAAVTFLEESGIA 131 (372)
T ss_pred HHHccccchHHHHHHHhhccchhHHHHHHHHHHHHHcCcc
Confidence 2555566666666554443 34456677777753
No 151
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=62.25 E-value=99 Score=34.91 Aligned_cols=89 Identities=21% Similarity=0.250 Sum_probs=57.0
Q ss_pred cHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhchhHHHH-HHHhhhHhHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 004361 150 TDELRELLMNAMKELEVAQLNSTMFEEKAQRISEAAIALKDEAAN-AWNNVNVTLDMVHEIVNEECIAKEAVHKATMALS 228 (759)
Q Consensus 150 ~~~l~e~l~~a~~ele~a~~ns~~fe~kaq~ise~ai~l~d~a~~-a~~~v~~~l~~iq~~~~~e~~akeav~~atmals 228 (759)
-.+-|-.|.+|+..|..|..+=.-++.+-+.-- | .-..+.. .+......++.-+.....-....|-.+.|+.++.
T Consensus 86 ~~~y~~al~qAea~la~a~~~~~~~~a~~~~~~--A--~i~~a~a~~l~~a~~~~~R~~~L~~~g~vs~~~~~~a~~a~~ 161 (352)
T COG1566 86 PRDYRAALEQAEAALAAAEAQLRNLRAQLASAQ--A--LIAQAEAQDLDQAQNELERRAELAQRGVVSREELDRARAALQ 161 (352)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H--HHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Confidence 356777888888888888777666665433211 1 1111111 3455555566666777777777888888888888
Q ss_pred HHHHHHHHHHHHhh
Q 004361 229 LAEARLQVAIESLQ 242 (759)
Q Consensus 229 laearlq~a~e~~~ 242 (759)
-|+|.+..|.++..
T Consensus 162 ~A~A~~~~a~~~~~ 175 (352)
T COG1566 162 AAEAALAAAQAAQK 175 (352)
T ss_pred HHHHHHHHhHHHHH
Confidence 88888887764443
No 152
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=60.45 E-value=79 Score=36.53 Aligned_cols=109 Identities=14% Similarity=0.133 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHh---hcccc---cccccchhhHHH---------HHHHHHHHHHHH
Q 004361 603 LFDVLWLLLASVIFVPIFQKIPGGSPVLGYLAAGIL---IGPYG---LSIIRHVHGTKA---------IAEFGVVFLLFN 667 (759)
Q Consensus 603 LlqL~LILlaA~LLg~LlrRL~gLP~VVGyILAGII---LGPsg---LGlI~~~eiLe~---------LAEIGLIfLLFl 667 (759)
+-.+.++++++.+++++=+|+ |-+=-|+=+|.+ ++|+. .|++++. .++. +-+|-+..+.-.
T Consensus 31 ~g~~a~~~v~G~~l~~IG~ri---Pi~k~yiGGg~il~~f~ps~Lv~~~~ip~~-~~~~v~~fm~~~~Fl~ffIa~LI~G 106 (414)
T PF03390_consen 31 IGGFAVMMVLGFLLGEIGDRI---PILKDYIGGGAILCIFVPSALVYFGLIPES-VVEAVTNFMKGSNFLYFFIAALIVG 106 (414)
T ss_pred HHHHHHHHHHHHHHHHHHhhC---hhhhccCChHHHHHHHHHHHHHHcCCCCHH-HHHHHHHHhccCChHHHHHHHHHHh
Confidence 566777888888888888877 333333444433 34543 3555542 1211 122223333333
Q ss_pred HhhcCChhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHH
Q 004361 668 IGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIV 716 (759)
Q Consensus 668 aGLELDl~~LKr~~K~iLvLAilgVLLp~~lVG~al~~lLGls~~~ALL 716 (759)
.=|.+|.+.|.|...+.+..-+.+++..+ +++.+.++++|+++..+++
T Consensus 107 SILgm~RklLika~~r~~p~il~g~~~a~-~~g~lvG~l~G~~~~~~i~ 154 (414)
T PF03390_consen 107 SILGMNRKLLIKAFARFIPPILGGVIGAF-LLGGLVGMLFGYSFKDAIF 154 (414)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCCHHHHHH
Confidence 33688988888866666655555555543 4555666777877655443
No 153
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=59.35 E-value=5.3e+02 Score=33.76 Aligned_cols=25 Identities=8% Similarity=-0.168 Sum_probs=18.8
Q ss_pred CcHHHHHHHHHHHHHHHHHhhhhhH
Q 004361 149 TTDELRELLMNAMKELEVAQLNSTM 173 (759)
Q Consensus 149 ~~~~l~e~l~~a~~ele~a~~ns~~ 173 (759)
....+.+.+++.++.++..+.-++.
T Consensus 710 ~~~~~~~~~~~~~~~~e~l~~l~~~ 734 (1311)
T TIGR00606 710 KLKSTESELKKKEKRRDEMLGLAPG 734 (1311)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4788888888888888887766443
No 154
>PRK11715 inner membrane protein; Provisional
Probab=59.31 E-value=47 Score=38.44 Aligned_cols=113 Identities=19% Similarity=0.277 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHHHhhcccccccccchh-----hHHHHHHHHHHHHHHHHhhcCChhHHhhhhhh
Q 004361 609 LLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHVH-----GTKAIAEFGVVFLLFNIGLELSVERLSSMKKY 683 (759)
Q Consensus 609 ILlaA~LLg~LlrRL~gLP~VVGyILAGIILGPsgLGlI~~~e-----iLe~LAEIGLIfLLFlaGLELDl~~LKr~~K~ 683 (759)
+-++++++-.+++++ ++-|+ =|+++|+.+.-+-+=++.-.+ .--.++..+.+.++ |+ -...+.+.+|.
T Consensus 313 LTF~~fFlfE~~~~~-~iHpi-QYlLVGlAl~lFYLLLLSlSEHigF~~AYliAa~a~v~li---~~--Y~~~vl~~~k~ 385 (436)
T PRK11715 313 LTFAAFFLFELLKKL-RIHPV-QYLLVGLALVLFYLLLLSLSEHIGFTLAYLIAALACVLLI---GF--YLSAVLRSWKR 385 (436)
T ss_pred HHHHHHHHHHHhcCc-eecHH-HHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHH---HH--HHHHHHhcchH
Confidence 334455555666666 55555 499999987754333322111 11223333332221 11 12334455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhccHHHHHHHHH
Q 004361 684 VFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSSTAVVLQVLQ 734 (759)
Q Consensus 684 iLvLAilgVLLp~~lVG~al~~lLGls~~~ALLLGaILSaTSpaVVv~VLk 734 (759)
.+.++.. +.. +-|+ ++.++. .--.|+++|.++.....++++-+-+
T Consensus 386 g~~~~~~--L~~--LYg~-Ly~lLq-~EDyALL~GSllLF~~La~vM~~TR 430 (436)
T PRK11715 386 GLLFAAA--LAA--LYGV-LYGLLQ-SEDYALLLGSLLLFAVLALVMFLTR 430 (436)
T ss_pred HHHHHHH--HHH--HHHH-HHHHHH-HhHHHHHHHHHHHHHHHHHHHheee
Confidence 5444332 111 1111 122222 2356788888887776666665433
No 155
>PF10136 SpecificRecomb: Site-specific recombinase; InterPro: IPR011385 This group represents a site-specific recombinase Gcr. Please see the following relevant reference: [].
Probab=58.86 E-value=3.7e+02 Score=32.94 Aligned_cols=58 Identities=19% Similarity=0.351 Sum_probs=35.6
Q ss_pred hHHHHHHHHHhhHHHHHHhhhhH-------------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 004361 276 DIKECQANLANCETELRRLQSKK-------------EELQKEVDRLNEVAEKAQMNALKAEEDVANIMLLAEQA 336 (759)
Q Consensus 276 di~~~q~~l~~ce~el~~~q~~k-------------~elqkev~~l~e~ae~aq~~a~kaeedvanim~laeqa 336 (759)
|.+..+.-|..|.++..++..+. +-|+.-++|+..+..--- ...+....++..|.-+-
T Consensus 211 d~~~l~vll~qCr~~v~~v~~~~~~~G~Sv~l~~~L~Rl~Q~L~Ri~~Ll~~l~---~~~~~~~~~~~~L~~~L 281 (643)
T PF10136_consen 211 DLKHLRVLLDQCREQVDRVRKHLEKYGVSVSLVFLLERLRQQLDRIELLLDLLV---DDSPDRRRAIVRLFKEL 281 (643)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhccccCeeHHHHHHHHHHHHHHHHHHHHHHHHc---ccCchhhHHHHHHHHHH
Confidence 77888888999999888776653 456667777766654333 22333344444443333
No 156
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=58.74 E-value=1.4e+02 Score=33.42 Aligned_cols=18 Identities=11% Similarity=0.108 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 004361 151 DELRELLMNAMKELEVAQ 168 (759)
Q Consensus 151 ~~l~e~l~~a~~ele~a~ 168 (759)
.+++..|..|+.+|..|.
T Consensus 95 ~~~~~~l~~A~a~l~~a~ 112 (390)
T PRK15136 95 TDAEQAFEKAKTALANSV 112 (390)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456666777777666544
No 157
>PF03323 GerA: Bacillus/Clostridium GerA spore germination protein; InterPro: IPR004995 Dormant Bacillus subtilis spores germinate in the presence of particular nutrients called germinants. The spores are thought to recognise germinants through receptor proteins encoded by the gerA family of operons, which includes gerA, gerB, and gerK. The GerA proteins are predicted to be membrane associated.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=58.49 E-value=95 Score=36.12 Aligned_cols=64 Identities=16% Similarity=0.222 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCchHHHH---HHHHHhhcccc--cccccchh----hHHHHHHHHHHHHHHHHhh
Q 004361 604 FDVLWLLLASVIFVPIFQKIPGGSPVLGY---LAAGILIGPYG--LSIIRHVH----GTKAIAEFGVVFLLFNIGL 670 (759)
Q Consensus 604 lqL~LILlaA~LLg~LlrRL~gLP~VVGy---ILAGIILGPsg--LGlI~~~e----iLe~LAEIGLIfLLFlaGL 670 (759)
++++++.++--++-...- ++|..+|. +++|+++|... .|++.+.- .+..++.|.+.-+-|...+
T Consensus 326 ~E~l~m~~~~EllrEAgi---RlP~~ig~ti~iVGglviGqAaV~AglvS~~~iIvvaltai~sf~~p~~~~~~~~ 398 (470)
T PF03323_consen 326 IEALLMELIFELLREAGI---RLPKPIGQTIGIVGGLVIGQAAVQAGLVSPIMIIVVALTAIASFTIPNYELSNAI 398 (470)
T ss_pred HHHHHHHHHHHHHHHHHh---hCCHHHHHHHHHHHHHHHHHHHHHhCCcCcceeEeehHHHHHhhhchhhhhHHHH
Confidence 444444443333333333 45776665 56899999754 45655432 3455666665555554443
No 158
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=58.43 E-value=5.1e+02 Score=33.32 Aligned_cols=167 Identities=25% Similarity=0.358 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhchhHHHHHHHhhhHhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 004361 151 DELRELLMNAMKELEVAQLNSTMFEEKAQRISEAAIALKDEAANAWNNVNVTLDMVHEIVNEECIAKEAVHKATMALSLA 230 (759)
Q Consensus 151 ~~l~e~l~~a~~ele~a~~ns~~fe~kaq~ise~ai~l~d~a~~a~~~v~~~l~~iq~~~~~e~~akeav~~atmalsla 230 (759)
+++++.|----.-.|-|++..+|=||+|...-.---+++.+.+.--.|++ |+..|..-|-.--.+.-+..+-
T Consensus 300 e~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlE--------ILKaEmeekG~~~~~~ss~qfk 371 (1243)
T KOG0971|consen 300 ERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLE--------ILKAEMEEKGSDGQAASSYQFK 371 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHhcCCCCcccchHHHH
Q ss_pred HHHHHHH--HHHhhhhccCCCCCCCCcccccCCCCcchhhHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHH
Q 004361 231 EARLQVA--IESLQDVKQEDDYPEGSTEDDAKSDGKEEDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRL 308 (759)
Q Consensus 231 earlq~a--~e~~~~~~~~~~~~~~s~~~~~~~d~~~~~~~~~~a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l 308 (759)
+...|-+ .|+|=-.| .....++-|+...+..|..--.|+..|...||-|+.++|.+
T Consensus 372 qlEqqN~rLKdalVrLR----------------------DlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~a 429 (1243)
T KOG0971|consen 372 QLEQQNARLKDALVRLR----------------------DLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQA 429 (1243)
T ss_pred HHHHHHHHHHHHHHHHH----------------------hcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHH---HHHhhhHHHHH-----------HHHHHHHHHHHHHHHHhhhccc
Q 004361 309 NEVAEKAQ---MNALKAEEDVA-----------NIMLLAEQAVAFEIEATQRVND 349 (759)
Q Consensus 309 ~e~ae~aq---~~a~kaeedva-----------nim~laeqava~e~ea~q~~nd 349 (759)
.-+-.--| .+|+-|||-|. .+|+|=|.- .+|||..-+|+
T Consensus 430 Es~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVklLeetv--~dlEalee~~E 482 (1243)
T KOG0971|consen 430 ESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLLEETV--GDLEALEEMNE 482 (1243)
T ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHHHHHH--HHHHHHHHHHH
No 159
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=57.63 E-value=2.1e+02 Score=32.66 Aligned_cols=111 Identities=17% Similarity=0.193 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHHHhhcccccc-ccc------chhhHHHHHHHH------HHHHHHHHhhcCChh
Q 004361 609 LLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLS-IIR------HVHGTKAIAEFG------VVFLLFNIGLELSVE 675 (759)
Q Consensus 609 ILlaA~LLg~LlrRL~gLP~VVGyILAGIILGPsgLG-lI~------~~eiLe~LAEIG------LIfLLFlaGLELDl~ 675 (759)
+++++.++-++.-+..-=|.+.--|-.|+++....+. ..+ ...++..+-.+| -.++.+.+|-=+|+.
T Consensus 7 Mi~vg~~liYLai~k~~EPlLLlPigfG~il~N~P~~~~~~~~~~~~~~g~l~~~~~~gi~~~l~P~LIF~GIGAmtDFg 86 (360)
T PF03977_consen 7 MILVGFLLIYLAIKKKYEPLLLLPIGFGMILVNIPLSGLMDQPVGGGEIGGLQPIYYFGISNGLFPPLIFMGIGAMTDFG 86 (360)
T ss_pred HHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHhcCchhhcccccccCCCChHHHHHHHhhhcchhhHHHHHHHhHHHhhH
Confidence 3444444444444431356666677889888743221 111 123344333333 345666778889999
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHh
Q 004361 676 RLSSMKKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLA 722 (759)
Q Consensus 676 ~LKr~~K~iLvLAilgVLLp~~lVG~al~~lLGls~~~ALLLGaILS 722 (759)
-+..+.+..+.-+..++ ..+ +++....++|++..++-.+|++=.
T Consensus 87 pllanP~~~llGaaAQ~-Gif--~t~~~A~~lGf~~~eAAsIgIIGg 130 (360)
T PF03977_consen 87 PLLANPKTLLLGAAAQF-GIF--ATFLGAILLGFTPKEAASIGIIGG 130 (360)
T ss_pred HHHhCHHHHHHHHHHHH-hHH--HHHHHHHHhCCCHHHhhHhhhccc
Confidence 99988877553333333 222 234445566887766666655544
No 160
>PF13514 AAA_27: AAA domain
Probab=57.25 E-value=4.4e+02 Score=33.78 Aligned_cols=40 Identities=18% Similarity=0.214 Sum_probs=24.4
Q ss_pred hhHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHH
Q 004361 267 DGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVD 306 (759)
Q Consensus 267 ~~~~~~a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~ 306 (759)
-...+...+.+.+....+..++.++.++......+.....
T Consensus 603 ~~~Wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 642 (1111)
T PF13514_consen 603 MRDWLARREAALEAAEELRAARAELEALRARRAAARAALA 642 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666666666666666666666555555443
No 161
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=57.09 E-value=2.7e+02 Score=29.70 Aligned_cols=26 Identities=23% Similarity=0.166 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhc
Q 004361 220 VHKATMALSLAEARLQVAIESLQDVK 245 (759)
Q Consensus 220 v~~atmalslaearlq~a~e~~~~~~ 245 (759)
+..+...+..|++++..|..-++..+
T Consensus 110 i~~~~~~~~~a~~~l~~a~~~~~r~~ 135 (334)
T TIGR00998 110 VESLKIKLEQAREKLLQAELDLRRRV 135 (334)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34455667777777777777766644
No 162
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=57.03 E-value=5.6e+02 Score=33.39 Aligned_cols=16 Identities=25% Similarity=0.181 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHhhh
Q 004361 228 SLAEARLQVAIESLQD 243 (759)
Q Consensus 228 slaearlq~a~e~~~~ 243 (759)
+-|..|+|-..-.+.+
T Consensus 147 ~~~~~~l~~i~~~L~~ 162 (1109)
T PRK10929 147 TEARRQLNEIERRLQT 162 (1109)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 3344455544444444
No 163
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=56.54 E-value=3.2e+02 Score=34.19 Aligned_cols=84 Identities=24% Similarity=0.316 Sum_probs=55.0
Q ss_pred HHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 004361 270 LLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVANIMLLAEQAVAFEIEATQRVND 349 (759)
Q Consensus 270 ~~~a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l~e~ae~aq~~a~kaeedvanim~laeqava~e~ea~q~~nd 349 (759)
.+.++.|+-..+..+-+++.++.++|.-.+..|.++.+|.+..+.+.+.+...+++ |+|.- +.. |.|+ +++.
T Consensus 123 ~er~~~El~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L~~~g~~~~~~~~~--~~~~~--~~~--~~e~--~~~~ 194 (775)
T PF10174_consen 123 RERLQRELERLRKTLEELQLRIETQQQTLDKADEEIEKLQEMLQSKGLSAEAEEED--NEALR--RIR--EAEA--RIMR 194 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccchhhh--hHHHH--HHH--HHHH--HHHH
Confidence 44567777777888888888888888888888899999999887777777444444 33333 222 2222 2345
Q ss_pred HHHHHHHHHHhh
Q 004361 350 AEIALQRAEKSL 361 (759)
Q Consensus 350 aeial~ka~k~~ 361 (759)
.+..|.+-++..
T Consensus 195 le~lle~~e~~~ 206 (775)
T PF10174_consen 195 LESLLERKEKEH 206 (775)
T ss_pred HHHHHHHHHHHh
Confidence 555555555554
No 164
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=56.38 E-value=43 Score=37.31 Aligned_cols=115 Identities=13% Similarity=0.172 Sum_probs=68.4
Q ss_pred HHHHHHhhccccccc---ccc-hhhHHHHHHHHHHHHHHHHhhcCChhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 004361 632 YLAAGILIGPYGLSI---IRH-VHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHFVS 707 (759)
Q Consensus 632 yILAGIILGPsgLGl---I~~-~eiLe~LAEIGLIfLLFlaGLELDl~~LKr~~K~iLvLAilgVLLp~~lVG~al~~lL 707 (759)
-++.|.++..+..+. +.. ...+-.=+.--+.+++|..|-.+|++...+.-++...+-+.-+++.+ ++|++...++
T Consensus 18 PLllga~inTf~P~~~~~~GgFTtalf~G~~~il~~~l~~~Ga~I~~k~~g~~l~kg~~l~~~K~~i~~-~~g~~~~~~~ 96 (314)
T TIGR00793 18 PLFLGALCHTFAPGAGKYFGSFTNGLITGTVPILAVWFFCMGASIDLSATGTVLRKSGTLVVTKIAVAW-VVAAIASRII 96 (314)
T ss_pred HHHHHHHHHhcCCchhhhcCchhHHHHcCcHHHHHHHHHHhCCeeeecccchhhhhcceeeeHHHHHHH-HHHHHHHHHc
Confidence 466777777544333 221 11111122224557889999999988766554444444444455553 4566666666
Q ss_pred CCC--------hHHHHHHHHHHhhccHHHHHHHHHHcCCCCChhHHHHH
Q 004361 708 GLP--------GPASIVIGNGLALSSTAVVLQVLQERGESTSRHGRATF 748 (759)
Q Consensus 708 Gls--------~~~ALLLGaILSaTSpaVVv~VLkELGLLnSe~GRlaL 748 (759)
|.. ....+.+-++++.|.-++=+.+..++|- +++.|-..+
T Consensus 97 g~~Gi~~g~~~GlS~LAiiaA~~nsNggLY~aL~~qyGd-~~D~gA~~i 144 (314)
T TIGR00793 97 PEDGVEVGFFAGLSTLALVAAMDMTNGGLYASIMQQYGT-KEEAGAFVL 144 (314)
T ss_pred CcCCccccceeccHHHHHHHHHhCCcHHHHHHHHHHcCC-Hhhhhhhhh
Confidence 532 3455666667777888888889999985 555555443
No 165
>PRK10711 hypothetical protein; Provisional
Probab=56.31 E-value=2.9e+02 Score=29.75 Aligned_cols=51 Identities=12% Similarity=0.131 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhhcCChhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 004361 659 FGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHFVSGLP 710 (759)
Q Consensus 659 IGLIfLLFlaGLELDl~~LKr~~K~iLvLAilgVLLp~~lVG~al~~lLGls 710 (759)
+|-...-|..-+--+++.+|++++.++.--+.+.++.+ +.++.+..++|.+
T Consensus 66 LgPAtVALAvPLY~q~~~lk~~~~~I~~~~~vG~~v~i-~s~~~l~~~lg~~ 116 (231)
T PRK10711 66 LQPAVVALAFPLYEQLHQIRARWKSIISICFIGSVVAM-VTGTAVALWMGAT 116 (231)
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCcC
Confidence 34455556666666888899999887655455555543 3455566677765
No 166
>PHA02562 46 endonuclease subunit; Provisional
Probab=56.19 E-value=3.7e+02 Score=30.96 Aligned_cols=29 Identities=10% Similarity=0.142 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 004361 217 KEAVHKATMALSLAEARLQVAIESLQDVK 245 (759)
Q Consensus 217 keav~~atmalslaearlq~a~e~~~~~~ 245 (759)
.++++++......++..+......+...+
T Consensus 254 ~~~L~~l~~~~~~~~~~l~~~~~~~~~~~ 282 (562)
T PHA02562 254 SAALNKLNTAAAKIKSKIEQFQKVIKMYE 282 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35567777777777777776666666553
No 167
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=56.08 E-value=2.1e+02 Score=33.00 Aligned_cols=111 Identities=14% Similarity=0.170 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHHHhhcccccc-----c-----cc-------------chhhHHHHHHHH-----
Q 004361 609 LLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLS-----I-----IR-------------HVHGTKAIAEFG----- 660 (759)
Q Consensus 609 ILlaA~LLg~LlrRL~gLP~VVGyILAGIILGPsgLG-----l-----I~-------------~~eiLe~LAEIG----- 660 (759)
+++++.++-++.-+..-=|.+.--|-.|+++....+. . +. +..++..+-++|
T Consensus 27 Mi~ig~~LiYLai~k~~EPLLLlPigfG~il~NiP~~~~~~g~~~~~~~~~~~~~~~~~~~~~~gg~L~~~~~~gi~~gl 106 (399)
T TIGR03136 27 LIIFGFFLAYLGFKRTLEPLIMVPMGLGMMAVNAGVMFLEAGVIGTLHLDPMVSDPSVLVNLMQINFLQPVYNFTFSNSL 106 (399)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCccccccccccccccccccccccchhccccCCcHHHHHHHHHHhccc
Confidence 3344444444444431346666667788888743221 0 01 112344333333
Q ss_pred -HHHHHHHHhhcCChhHHhhhhhhHHHHH-HHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHh
Q 004361 661 -VVFLLFNIGLELSVERLSSMKKYVFGLG-SAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLA 722 (759)
Q Consensus 661 -LIfLLFlaGLELDl~~LKr~~K~iLvLA-ilgVLLp~~lVG~al~~lLGls~~~ALLLGaILS 722 (759)
-.++.+.+|-=+|+.-+..+.+..+..| ..++- .+ +++....++|++..++-.+|++=.
T Consensus 107 ~P~LIFlGIGAMtDFgpllanP~~~ll~gaaAQ~G-iF--~t~~~A~~lGF~~~eAAsIgIIGg 167 (399)
T TIGR03136 107 VACILFFGIGAMSDISFILARPWASITVALFAEMG-TF--ATLVIGYYCGLTPGEAAAVGTIGG 167 (399)
T ss_pred HHHHHHHhccHHhcchHHHhChHHHHHHHHHHHhh-HH--HHHHHHHHcCCCHHHhhHHhhccc
Confidence 2345556777899999998888766533 44432 22 233444567887776666665544
No 168
>PHA02557 22 prohead core protein; Provisional
Probab=55.88 E-value=3.2e+02 Score=30.19 Aligned_cols=59 Identities=19% Similarity=0.248 Sum_probs=43.5
Q ss_pred HHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 004361 277 IKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVANIMLLAEQ 335 (759)
Q Consensus 277 i~~~q~~l~~ce~el~~~q~~k~elqkev~~l~e~ae~aq~~a~kaeedvanim~laeq 335 (759)
|-+.+..|.+++.++.++-.+.-+|++.++.+..-.--+..-...+|-..--++.|+|.
T Consensus 143 V~em~~~L~E~e~~~~~l~~en~~l~e~i~~~~r~~i~~e~t~gLtdsQkeKv~~L~Eg 201 (271)
T PHA02557 143 VAEMEEELDEMEEELNELFEENVALEEYINEVKREVILSEVTKDLTESQKEKVASLAEG 201 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHhc
Confidence 45567788888888888888888888887777666555555666667666677777774
No 169
>COG4214 XylH ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism]
Probab=55.60 E-value=3.8e+02 Score=30.97 Aligned_cols=35 Identities=11% Similarity=0.118 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHH----HHHHHhcCCCchHHHHHHHHHhh
Q 004361 603 LFDVLWLLLASVIF----VPIFQKIPGGSPVLGYLAAGILI 639 (759)
Q Consensus 603 LlqL~LILlaA~LL----g~LlrRL~gLP~VVGyILAGIIL 639 (759)
.+.++..++++.++ +++...+ ++|.++ -.++|+++
T Consensus 111 ~vtii~~l~~G~liGa~~G~~iay~-~vPSFI-VTLaGmLv 149 (394)
T COG4214 111 PVTIIVTLVLGGLIGAWQGFWIAYL-KVPSFI-VTLAGMLV 149 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-cCchHH-HHhHHHHH
Confidence 34444444444444 4666777 899988 46888866
No 170
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=55.59 E-value=24 Score=44.47 Aligned_cols=47 Identities=23% Similarity=0.495 Sum_probs=31.6
Q ss_pred hhcccCCccccccccccCCCCccchhhHHHHHHHHHHhhc------hhHHHHHHHHhhh
Q 004361 486 LQKKSSRFFPASFFSSAVDGTESTQASIFQGLMEYARKQL------PKLVLGFLLFGAG 538 (759)
Q Consensus 486 ~~kkssrff~asffs~~~d~~~~t~~~vf~~l~~s~~~q~------pklv~g~~l~gag 538 (759)
..+++.|||+.+|+-+- .--++|..+|-.+-.+. |.-|+|+.++++|
T Consensus 926 rk~~~~k~y~ltFi~SI------iwIsi~SyilV~~at~IG~vlGIse~VmGlTfLA~G 978 (1096)
T TIGR00927 926 RRQEARKFFVITFLGSI------MWIAMFSYLMVWWAHQVGETIGISEEIMGLTILAAG 978 (1096)
T ss_pred CcccccceeeehHHHHH------HHHHHHHHHHHHHHHHhhhhcCCChhhhhhhhhhhh
Confidence 34567789999998776 45666766665554433 5667777777776
No 171
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=55.57 E-value=1e+02 Score=30.77 Aligned_cols=75 Identities=15% Similarity=0.212 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhhc-CChhHHhhhhhhHHHHHHHHH-HHHHHHHHHHHHHH-h---CCChHHHHHHHHHHhhccHHHHHHH
Q 004361 659 FGVVFLLFNIGLE-LSVERLSSMKKYVFGLGSAQV-LVTAVVVGLVAHFV-S---GLPGPASIVIGNGLALSSTAVVLQV 732 (759)
Q Consensus 659 IGLIfLLFlaGLE-LDl~~LKr~~K~iLvLAilgV-LLp~~lVG~al~~l-L---Gls~~~ALLLGaILSaTSpaVVv~V 732 (759)
+|++++++...+. +..++++.... +.+.-..+ ++| +.+|.+.++- + +++...+++++.++....++.++..
T Consensus 39 iGMlLL~l~L~~~~vk~~~v~~~a~--~LL~~m~LfFVP-agVGim~~~~ll~~~~~~Il~~ivvSTllvl~vtg~v~~~ 115 (141)
T PRK04125 39 IGLVLLFVLLCTKVVKLEQVESLGT--ALTNNIGFLFVP-SGISVINSLGVMSQYPVQIIGVIIVATILLLACTGLFSQF 115 (141)
T ss_pred HHHHHHHHHHHhCCcCHHHHHHHHH--HHHHHHHHHHhh-hHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666655554 45555655433 22333333 455 4567765542 1 3455677777777777888887777
Q ss_pred HHHc
Q 004361 733 LQER 736 (759)
Q Consensus 733 LkEL 736 (759)
+...
T Consensus 116 l~r~ 119 (141)
T PRK04125 116 ILGK 119 (141)
T ss_pred HHHh
Confidence 6543
No 172
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=55.49 E-value=2.9e+02 Score=29.57 Aligned_cols=18 Identities=39% Similarity=0.302 Sum_probs=9.8
Q ss_pred cccHHHHHHHHHHhhcCC
Q 004361 347 VNDAEIALQRAEKSLSNS 364 (759)
Q Consensus 347 ~ndaeial~ka~k~~~~~ 364 (759)
+..++..|+.++..+...
T Consensus 188 ~~~~~~~l~~a~~~l~~~ 205 (327)
T TIGR02971 188 VKSALEAVQQAEALLELT 205 (327)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 344455666666666543
No 173
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=55.04 E-value=37 Score=31.32 Aligned_cols=44 Identities=18% Similarity=0.243 Sum_probs=28.8
Q ss_pred HHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 004361 283 NLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVANIML 331 (759)
Q Consensus 283 ~l~~ce~el~~~q~~k~elqkev~~l~e~ae~aq~~a~kaeedvanim~ 331 (759)
.|+-|-.. .+.++|+.+|..|+.++.+++.++..|-.++.++..
T Consensus 16 LLaGCAs~-----~kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~ 59 (85)
T PRK09973 16 LLSGCVNE-----QKVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKS 59 (85)
T ss_pred HHHHcCCc-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666654 377777788888877777776666666555554444
No 174
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.78 E-value=61 Score=35.40 Aligned_cols=63 Identities=25% Similarity=0.400 Sum_probs=42.3
Q ss_pred cchhhHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 004361 264 KEEDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDV 326 (759)
Q Consensus 264 ~~~~~~~~~a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l~e~ae~aq~~a~kaeedv 326 (759)
...+..+-..+.+.++.|..+....+++..+|.+..++|+|+++++..-.+.|-.=...+++.
T Consensus 34 ~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I 96 (265)
T COG3883 34 QNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENI 96 (265)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666677777777777777777777777777777777777776666655554455543
No 175
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=54.63 E-value=1.2e+02 Score=35.43 Aligned_cols=60 Identities=17% Similarity=0.168 Sum_probs=38.9
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHhhcccccc-cccc------hhhHHHHHHHHHHHHHHHHhhcCCh
Q 004361 614 VIFVPIFQKIPGGSPVLGYLAAGILIGPYGLS-IIRH------VHGTKAIAEFGVVFLLFNIGLELSV 674 (759)
Q Consensus 614 ~LLg~LlrRL~gLP~VVGyILAGIILGPsgLG-lI~~------~eiLe~LAEIGLIfLLFlaGLELDl 674 (759)
++...+.+.+ |...+++-+++|+++|..... ...+ ..+.+.++.+.-.+++++.|+++..
T Consensus 219 ~~~y~lAe~l-g~SgilAvv~aGl~l~~~~~~~~~~~~~~~~~~~fw~~l~~ll~~~iFvllGl~l~~ 285 (525)
T TIGR00831 219 FAGFLLAERF-HFSGVIAVVAAGLILTNYGRDFSMSPTTRLIALDFWSVIVFLVNGIIFILIGVQTPG 285 (525)
T ss_pred HHHHHHHHHh-CCCHHHHHHHHHHHHccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455555 777788888888888865433 2221 1344667777777888899998864
No 176
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=53.76 E-value=2.6e+02 Score=33.17 Aligned_cols=60 Identities=25% Similarity=0.274 Sum_probs=40.3
Q ss_pred hHHHHHHHhhhHhHHHHHHHHhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhhccCCC
Q 004361 190 DEAANAWNNVNVTLDMVHEIVNEECIAKEAVHKATMAL----SLAEARLQVAIESLQDVKQEDD 249 (759)
Q Consensus 190 d~a~~a~~~v~~~l~~iq~~~~~e~~akeav~~atmal----slaearlq~a~e~~~~~~~~~~ 249 (759)
|++...-..+..-+|.+-+++.+|..|+..|.+-.-.+ .-++...+.-..=++..+..+.
T Consensus 274 ~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~ 337 (560)
T PF06160_consen 274 DEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYT 337 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 56667777888899999999999999999998654433 3334444444444444444443
No 177
>PRK09039 hypothetical protein; Validated
Probab=53.09 E-value=3.7e+02 Score=30.08 Aligned_cols=13 Identities=38% Similarity=0.493 Sum_probs=4.9
Q ss_pred HHHHhhhHHHHHH
Q 004361 316 QMNALKAEEDVAN 328 (759)
Q Consensus 316 q~~a~kaeedvan 328 (759)
|++++.++=+.+.
T Consensus 152 Qla~le~~L~~ae 164 (343)
T PRK09039 152 QLAALEAALDASE 164 (343)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 178
>PF03419 Peptidase_U4: Sporulation factor SpoIIGA This family belongs to family U4 of the peptidase classification.; InterPro: IPR005081 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This group of peptidases belong to the MEROPS peptidase family U4 (SpoIIGA peptidase family, clan U-). Sporulation in bacteria such as Bacillus subtilis involves the formation of a polar septum, which divides the sporangium into a mother cell and a forespore. The sigma E factor, which is encoded within the spoIIG operon, is a cell-specific regulatory protein that directs gene transcription in the mother cell. Sigma E is synthesised as an inactive proprotein pro-sigma E, which is converted to the mature factor by the putative processing enzyme SpoIIGA []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis, 0030436 asexual sporulation
Probab=53.03 E-value=2e+02 Score=31.01 Aligned_cols=64 Identities=17% Similarity=0.137 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhccc--ccccccchh-hHHHHHHHHHHHHHHHHhhcC
Q 004361 601 ASLFDVLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPY--GLSIIRHVH-GTKAIAEFGVVFLLFNIGLEL 672 (759)
Q Consensus 601 ~lLlqL~LILlaA~LLg~LlrRL~gLP~VVGyILAGIILGPs--gLGlI~~~e-iLe~LAEIGLIfLLFlaGLEL 672 (759)
.++++.+++.+.+.++.. |.-..=+++|-++|.. .+-+++... ....+..+.+.++|..+++..
T Consensus 12 N~~md~~lL~~t~~~~~~--------~~~~~Rll~~A~~Gal~~~~~~~p~~~~~~~~~~k~l~s~lmv~iaf~~ 78 (293)
T PF03419_consen 12 NFLMDYFLLWLTARLLKR--------RASRWRLLLGAAIGALYSLLIFFPPLSFLYSILFKLLISVLMVLIAFGP 78 (293)
T ss_pred HHHHHHHHHHHHHHHhcC--------CCcHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 556777777666665433 2222345555555532 122233333 345667777777777777764
No 179
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=52.62 E-value=4.7e+02 Score=31.11 Aligned_cols=143 Identities=19% Similarity=0.270 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhchhHHHHHHHhhhHhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 004361 151 DELRELLMNAMKELEVAQLNSTMFEEKAQRISEAAIALKDEAANAWNNVNVTLDMVHEIVNEECIAKEAVHKATMALSLA 230 (759)
Q Consensus 151 ~~l~e~l~~a~~ele~a~~ns~~fe~kaq~ise~ai~l~d~a~~a~~~v~~~l~~iq~~~~~e~~akeav~~atmalsla 230 (759)
+.|..-++.....++.-...-+...+.-+++.+..-.++++-..- -+.++..=..|..|++.+++-.-.+.-.
T Consensus 354 ~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~-------~~~l~~L~~dE~~Ar~~l~~~~~~l~~i 426 (560)
T PF06160_consen 354 KELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEI-------NESLQSLRKDEKEAREKLQKLKQKLREI 426 (560)
T ss_pred HHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444555666666665554444443333 3445566778888888888554444444
Q ss_pred HHHHHHHHHHhhhhccCCCCCCCCcccccCCCCcchhhHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHH
Q 004361 231 EARLQVAIESLQDVKQEDDYPEGSTEDDAKSDGKEEDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNE 310 (759)
Q Consensus 231 earlq~a~e~~~~~~~~~~~~~~s~~~~~~~d~~~~~~~~~~a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l~e 310 (759)
+-+++.. .-|..+.+ =...+..+.+.|......|.+---.+..++....+.+..|++|.+
T Consensus 427 kR~lek~-----------nLPGlp~~---------y~~~~~~~~~~i~~l~~~L~~~pinm~~v~~~l~~a~~~v~~L~~ 486 (560)
T PF06160_consen 427 KRRLEKS-----------NLPGLPED---------YLDYFFDVSDEIEELSDELNQVPINMDEVNKQLEEAEDDVETLEE 486 (560)
T ss_pred HHHHHHc-----------CCCCCCHH---------HHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 4443321 33333331 125677888888888888877666667777777778888888877
Q ss_pred HHHHHHHHHh
Q 004361 311 VAEKAQMNAL 320 (759)
Q Consensus 311 ~ae~aq~~a~ 320 (759)
.+..---.|.
T Consensus 487 ~t~~li~~A~ 496 (560)
T PF06160_consen 487 KTEELIDNAT 496 (560)
T ss_pred HHHHHHHHHH
Confidence 6654443333
No 180
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=52.33 E-value=2.7e+02 Score=30.06 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=11.5
Q ss_pred HHHHHhhhHHHHHHHHHhhHHHHHH
Q 004361 269 LLLAAENDIKECQANLANCETELRR 293 (759)
Q Consensus 269 ~~~~a~~di~~~q~~l~~ce~el~~ 293 (759)
.++.++.+...+++.+..-+.++..
T Consensus 146 ~~~~~~~~~~~a~~~~~~a~~~~~~ 170 (331)
T PRK03598 146 DLENARSSRDQAQATLKSAQDKLSQ 170 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555444444444444433
No 181
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=52.01 E-value=6.6e+02 Score=32.67 Aligned_cols=163 Identities=18% Similarity=0.258 Sum_probs=79.1
Q ss_pred CcHHHHHHHHHHHHHHHHHhhhhhH-----HHHHHHHHHHHHHhchhHHH---HHHHhhhHhHHHHHHHHhH--------
Q 004361 149 TTDELRELLMNAMKELEVAQLNSTM-----FEEKAQRISEAAIALKDEAA---NAWNNVNVTLDMVHEIVNE-------- 212 (759)
Q Consensus 149 ~~~~l~e~l~~a~~ele~a~~ns~~-----fe~kaq~ise~ai~l~d~a~---~a~~~v~~~l~~iq~~~~~-------- 212 (759)
.+..+++.|+--+.++--|.+|.-- .+++-+++=|..=-++++-. ......++.+..|+..+.+
T Consensus 256 ~~e~~~~~l~~Lk~k~~W~~V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~ 335 (1074)
T KOG0250|consen 256 QLEDLKENLEQLKAKMAWAWVNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQ 335 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhh
Confidence 3888888888887777777776532 23333333333333333333 2333333344444443321
Q ss_pred --HH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCcccccCCCCcchhhHHHHHhhhH-HHHHHHHHhhH
Q 004361 213 --EC-IAKEAVHKATMALSLAEARLQVAIESLQDVKQEDDYPEGSTEDDAKSDGKEEDGLLLAAENDI-KECQANLANCE 288 (759)
Q Consensus 213 --e~-~akeav~~atmalslaearlq~a~e~~~~~~~~~~~~~~s~~~~~~~d~~~~~~~~~~a~~di-~~~q~~l~~ce 288 (759)
|+ .|++.++...-...-.+.....+.-..+..|..+| .-+..+.-++++. .+.+..+.+.|
T Consensus 336 d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d---------------~l~k~I~~~~~~~~~~~~~~~~e~e 400 (1074)
T KOG0250|consen 336 DEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVD---------------RLEKQIADLEKQTNNELGSELEERE 400 (1074)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 22 23444444444444444444444444444332111 1223333333333 55555556666
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 004361 289 TELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDV 326 (759)
Q Consensus 289 ~el~~~q~~k~elqkev~~l~e~ae~aq~~a~kaeedv 326 (759)
.++..|+...+.+|..+.+|.+.-+.-+-++..-+|.-
T Consensus 401 ~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~ 438 (1074)
T KOG0250|consen 401 NKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEK 438 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 66666666666666666666555555555555444444
No 182
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=51.81 E-value=3.4e+02 Score=29.35 Aligned_cols=66 Identities=26% Similarity=0.299 Sum_probs=47.6
Q ss_pred hHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 004361 268 GLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVANIMLLA 333 (759)
Q Consensus 268 ~~~~~a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l~e~ae~aq~~a~kaeedvanim~la 333 (759)
..+.+-+-||--.+..+.+.+.||.++..+.++|+++..-|++.-.+-+-+..-++..+-+-+.-+
T Consensus 89 ~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i 154 (239)
T COG1579 89 RELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEI 154 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555667777778888889999999999999999999888877776666555555444433333
No 183
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=51.55 E-value=1.3e+02 Score=33.94 Aligned_cols=51 Identities=27% Similarity=0.335 Sum_probs=36.1
Q ss_pred CCcchhhHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHH--------HHHHHHHHHHHH
Q 004361 262 DGKEEDGLLLAAENDIKECQANLANCETELRRLQSKKEE--------LQKEVDRLNEVA 312 (759)
Q Consensus 262 d~~~~~~~~~~a~~di~~~q~~l~~ce~el~~~q~~k~e--------lqkev~~l~e~a 312 (759)
|-++=+.+++.|+.++..|++++.+.+.++...|...+. .|.+.+|.++++
T Consensus 85 D~~~y~~al~qAea~la~a~~~~~~~~a~~~~~~A~i~~a~a~~l~~a~~~~~R~~~L~ 143 (352)
T COG1566 85 DPRDYRAALEQAEAALAAAEAQLRNLRAQLASAQALIAQAEAQDLDQAQNELERRAELA 143 (352)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777888888888888888888888776666654443 344555665555
No 184
>TIGR03869 F420-0_ABCperm proposed F420-0 ABC transporter, permease protein. his small clade of ABC-type transporter permease protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and an ATPase (TIGR03873). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with an F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this permease protein is a component of a F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=51.51 E-value=1.3e+02 Score=33.57 Aligned_cols=43 Identities=21% Similarity=0.064 Sum_probs=29.2
Q ss_pred CCchHHHHHHHHHhhccccc-------ccccchhh--HHHHHHHHHHHHHHH
Q 004361 625 GGSPVLGYLAAGILIGPYGL-------SIIRHVHG--TKAIAEFGVVFLLFN 667 (759)
Q Consensus 625 gLP~VVGyILAGIILGPsgL-------GlI~~~ei--Le~LAEIGLIfLLFl 667 (759)
|+|+++.-+++|..+|-.+. |.+-++.. +..-+.+++++.+|.
T Consensus 53 RlPRil~a~lvG~~La~sG~i~Q~l~rNpLa~P~iLGissGA~l~~~l~~~~ 104 (325)
T TIGR03869 53 RLPRVLTAAAVGAGLAIAGAVMQSLTRNPLADPYLLGLSSGASLGAVAVLVL 104 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 77999999999999985542 22223333 456677777777765
No 185
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=51.09 E-value=3.8e+02 Score=29.61 Aligned_cols=42 Identities=19% Similarity=0.332 Sum_probs=19.0
Q ss_pred hhHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHH
Q 004361 267 DGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRL 308 (759)
Q Consensus 267 ~~~~~~a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l 308 (759)
|+.+--+++-|.+|.+.|++.+.+-.||.....-++-+|.+.
T Consensus 220 Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf 261 (269)
T PF05278_consen 220 EKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKF 261 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444444444444444444444455544
No 186
>COG3371 Predicted membrane protein [Function unknown]
Probab=50.23 E-value=2.6e+02 Score=29.25 Aligned_cols=59 Identities=15% Similarity=0.110 Sum_probs=38.5
Q ss_pred hcCCCchHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHhhcCChhHHhhhhhh
Q 004361 622 KIPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKY 683 (759)
Q Consensus 622 RL~gLP~VVGyILAGIILGPsgLGlI~~~eiLe~LAEIGLIfLLFlaGLELDl~~LKr~~K~ 683 (759)
|+ +-+.-.-+++.|+.+.-. |..|....-..+..+.+.+++|.+.+-+...+.++..+.
T Consensus 73 k~-~~~g~~ll~is~lfLaLV--GVFpEgt~pH~~vs~~ffll~fi~~~i~si~~~~~~~~~ 131 (181)
T COG3371 73 KI-ENYGGALLIISGLFLALV--GVFPEGTPPHVFVSILFFLLSFIAMLIYSIGRLLRNRSG 131 (181)
T ss_pred Hh-hhcchHHHHHHHHHHHhe--eeCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 44 333333467888877643 445544444566778888899999998888877664443
No 187
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=50.20 E-value=67 Score=27.95 Aligned_cols=45 Identities=22% Similarity=0.339 Sum_probs=35.5
Q ss_pred HHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 004361 272 AAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQ 316 (759)
Q Consensus 272 ~a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l~e~ae~aq 316 (759)
..+..++.-+..+...+.+++.+|.+..+|+.|+.+|+....-.+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~~~rIe~ 65 (85)
T TIGR02209 21 SAQHQTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSRHERIEK 65 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 445677888888899999999999999999999988876544333
No 188
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=50.09 E-value=17 Score=40.39 Aligned_cols=72 Identities=13% Similarity=0.154 Sum_probs=46.6
Q ss_pred HHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHhhcCChhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 004361 632 YLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHFVS 707 (759)
Q Consensus 632 yILAGIILGPsgLGlI~~~eiLe~LAEIGLIfLLFlaGLELDl~~LKr~~K~iLvLAilgVLLp~~lVG~al~~lL 707 (759)
-++.|+++|..--.+ -+.+..-..+-+.|+-|-.|-.+|++.+.+-+-.-+.+|++.++++. ...++...++
T Consensus 177 PlliG~ilGNLD~~~---r~fl~~~~~~lIpFf~FaLGaginl~~i~~aGl~GIlLGl~v~~vtG-~~~~~~dr~~ 248 (314)
T TIGR00793 177 PFLVGFALGNLDPEL---RDFFSKAVQTLIPFFAFALGNTIDLGVIIQTGLLGILLGVSVIILTG-IPLILADKFI 248 (314)
T ss_pred HHHHHHHHhcCCHHH---HHHhccCCCeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHh-HHHHHHHHHh
Confidence 467888888641110 12222223345778999999999999998887777778877666663 3445555555
No 189
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=49.99 E-value=1.6e+02 Score=33.15 Aligned_cols=104 Identities=20% Similarity=0.248 Sum_probs=49.0
Q ss_pred HHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHhhcCChhH----HhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004361 631 GYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVER----LSSMKKYVFGLGSAQVLVTAVVVGLVAHFV 706 (759)
Q Consensus 631 GyILAGIILGPsgLGlI~~~eiLe~LAEIGLIfLLFlaGLELDl~~----LKr~~K~iLvLAilgVLLp~~lVG~al~~l 706 (759)
.+.+.|++.+-..-++ ++=+-+.++-.+++|+.+|++=-... +.......+..-.+++++|+. ...++.++
T Consensus 4 LFF~LG~~A~~~kSdL----~iP~~i~k~lsiyLLlaIGlkGG~~l~~~~~~~~~~~~~~~~~lg~liPl~-~~~iLr~~ 78 (327)
T PF05982_consen 4 LFFILGIIAALLKSDL----EIPEAIYKFLSIYLLLAIGLKGGVELAHSGLTALLLPLLAAVLLGILIPLI-AFPILRRL 78 (327)
T ss_pred HHHHHHHHHHHHcCCC----cCChhHHHHHHHHHHHHHhcccHHHHHcCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHc
Confidence 3667777776432221 12234455566677777776533322 222222222222333444421 11222333
Q ss_pred hCCChHHHHHHHHHH---hhccHHHHHHHHHHcCCC
Q 004361 707 SGLPGPASIVIGNGL---ALSSTAVVLQVLQERGES 739 (759)
Q Consensus 707 LGls~~~ALLLGaIL---SaTSpaVVv~VLkELGLL 739 (759)
.+++...+..+++-. |...+++....|+..|+.
T Consensus 79 ~~l~~~daaAiAAhYGSVSavTF~~a~~~L~~~gi~ 114 (327)
T PF05982_consen 79 GKLDRADAAAIAAHYGSVSAVTFAAALAFLESQGIS 114 (327)
T ss_pred cCCChhhHHHHHHHcCchHHHHHHHHHHHHHHCCCC
Confidence 456655555555543 333455666777777753
No 190
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=49.88 E-value=5.1e+02 Score=30.73 Aligned_cols=38 Identities=21% Similarity=0.291 Sum_probs=16.3
Q ss_pred HHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHH
Q 004361 270 LLAAENDIKECQANLANCETELRRLQSKKEELQKEVDR 307 (759)
Q Consensus 270 ~~~a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~ 307 (759)
|..-.+++..-+..|..-+.+|.+.+...++++++..+
T Consensus 92 Lekr~e~Lekre~~Le~ke~~L~~re~eLee~~~e~~~ 129 (514)
T TIGR03319 92 LDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEE 129 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444433
No 191
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=49.82 E-value=3.3e+02 Score=28.57 Aligned_cols=152 Identities=18% Similarity=0.200 Sum_probs=92.2
Q ss_pred CcHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhchhHHHHHHHhhhHhHHHHHH---HHhHHHHHHHHH----H
Q 004361 149 TTDELRELLMNAMKELEVAQLNSTMFEEKAQRISEAAIALKDEAANAWNNVNVTLDMVHE---IVNEECIAKEAV----H 221 (759)
Q Consensus 149 ~~~~l~e~l~~a~~ele~a~~ns~~fe~kaq~ise~ai~l~d~a~~a~~~v~~~l~~iq~---~~~~e~~akeav----~ 221 (759)
++|+..+-+..+..+|+.+.---+-.|+.+..+...---+.++-..+-..+..+...+.+ -+.+---+-..+ .
T Consensus 9 eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~ 88 (237)
T PF00261_consen 9 ELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQ 88 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 367888888999999999998888999999888888888888777776655543333322 221111111111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCcccccCCCCcchhhHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHH
Q 004361 222 KATMALSLAEARLQVAIESLQDVKQEDDYPEGSTEDDAKSDGKEEDGLLLAAENDIKECQANLANCETELRRLQSKKEEL 301 (759)
Q Consensus 222 ~atmalslaearlq~a~e~~~~~~~~~~~~~~s~~~~~~~d~~~~~~~~~~a~~di~~~q~~l~~ce~el~~~q~~k~el 301 (759)
..-.-+..-|.+|..|...++-+- .-+.-+..-+.-.+..|...+..+..+..+..+|
T Consensus 89 ~~eeri~~lE~~l~ea~~~~ee~e----------------------~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eL 146 (237)
T PF00261_consen 89 SDEERIEELEQQLKEAKRRAEEAE----------------------RKYEEVERKLKVLEQELERAEERAEAAESKIKEL 146 (237)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHH----------------------HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHH
Confidence 122233444555555554444421 2233444555566677777777777777777788
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 004361 302 QKEVDRLNEVAEKAQMNALKA 322 (759)
Q Consensus 302 qkev~~l~e~ae~aq~~a~ka 322 (759)
+.++..+......-+..--++
T Consensus 147 E~el~~~~~~lk~lE~~~~~~ 167 (237)
T PF00261_consen 147 EEELKSVGNNLKSLEASEEKA 167 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhhh
Confidence 877777766655544444333
No 192
>PF08838 DUF1811: Protein of unknown function (DUF1811); InterPro: IPR014938 This entry consists uncharacterised bacterial proteins. Some of the proteins are annotated as being transcriptional regulators (see Q4MQL7 from SWISSPROT, Q65MA2 from SWISSPROT). The structure of one of the proteins has revealed a beta-barrel like structure with helix-turn-helix like motif. ; PDB: 2YXY_A 1SF9_A.
Probab=49.36 E-value=20 Score=34.05 Aligned_cols=24 Identities=42% Similarity=0.594 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHh
Q 004361 297 KKEELQKEVDRLNEVAEKAQMNAL 320 (759)
Q Consensus 297 ~k~elqkev~~l~e~ae~aq~~a~ 320 (759)
-+.|||.|+.+|+|+|.||++.--
T Consensus 8 s~~EL~~Ei~~L~ekarKAEq~G~ 31 (102)
T PF08838_consen 8 SEEELRQEIARLKEKARKAEQLGI 31 (102)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHCT-
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCC
Confidence 368999999999999999987643
No 193
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=49.25 E-value=3.7e+02 Score=30.78 Aligned_cols=14 Identities=7% Similarity=-0.064 Sum_probs=6.5
Q ss_pred cHHHHHHHH-HHcCC
Q 004361 725 STAVVLQVL-QERGE 738 (759)
Q Consensus 725 SpaVVv~VL-kELGL 738 (759)
-++..+|++ ..+|+
T Consensus 403 ~~G~~lp~~~~k~~~ 417 (449)
T TIGR00400 403 ILGGLLPIVAKLLKL 417 (449)
T ss_pred HHHHHHHHHHHHcCC
Confidence 344455554 44443
No 194
>TIGR02359 thiW thiW protein. Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved,to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=49.22 E-value=3e+02 Score=27.92 Aligned_cols=44 Identities=23% Similarity=0.253 Sum_probs=24.1
Q ss_pred hHHHHHHHHHhhcccc---cccccc-h-hhH---HHHHHHHHHHHHHHHhhc
Q 004361 628 PVLGYLAAGILIGPYG---LSIIRH-V-HGT---KAIAEFGVVFLLFNIGLE 671 (759)
Q Consensus 628 ~VVGyILAGIILGPsg---LGlI~~-~-eiL---e~LAEIGLIfLLFlaGLE 671 (759)
.-++-+++|+++||.. .+.+.+ . ..+ ..++-.|.++.-|.+|+=
T Consensus 34 ~~i~~vlaavllGP~~g~~~a~i~~ll~~l~~~g~~~afpg~~~~a~laGli 85 (160)
T TIGR02359 34 QHFVNVIAGVLLGPWYALAVAFIIGLLRNTLGLGTVLAFPGGMPGALLAGLL 85 (160)
T ss_pred hHHHHHHHHHHHchHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHH
Confidence 3456789999999962 111111 0 001 122334677777788883
No 195
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=49.12 E-value=3.9e+02 Score=30.03 Aligned_cols=24 Identities=17% Similarity=0.213 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 004361 216 AKEAVHKATMALSLAEARLQVAIE 239 (759)
Q Consensus 216 akeav~~atmalslaearlq~a~e 239 (759)
++..++.|...+..|+..++....
T Consensus 125 ~~a~l~~a~a~l~~a~~~~~R~~~ 148 (390)
T PRK15136 125 YQANIELQKTALAQAQSDLNRRVP 148 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555666665555443
No 196
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=48.99 E-value=2.9e+02 Score=27.73 Aligned_cols=100 Identities=24% Similarity=0.315 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCC-----Cc---cccc---CC----------CCcchhhHHHHHhhh
Q 004361 218 EAVHKATMALSLAEARLQVAIESLQDVKQEDDYPEG-----ST---EDDA---KS----------DGKEEDGLLLAAEND 276 (759)
Q Consensus 218 eav~~atmalslaearlq~a~e~~~~~~~~~~~~~~-----s~---~~~~---~~----------d~~~~~~~~~~a~~d 276 (759)
|++|.--++|.++...++-+.+.++-.++....+|. +. .... ++ -.++-++|+..=+..
T Consensus 23 e~L~~~i~~l~~~~~e~~~~~~tl~~lk~~~~g~E~LVpvGag~fv~~kv~~~~kviV~iGsg~~ae~~~~eAie~l~k~ 102 (145)
T COG1730 23 ESLQAQIAALNAAISELQTAIETLENLKGAGEGKEVLVPVGAGLFVKAKVKDMDKVIVSIGSGYYAEKSADEAIEFLKKR 102 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceEEEEeccCceEEEEcCCceeeeecHHHHHHHHHHH
Confidence 456666678899999999999999988877653333 11 0010 11 124457888888888
Q ss_pred HHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 004361 277 IKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQM 317 (759)
Q Consensus 277 i~~~q~~l~~ce~el~~~q~~k~elqkev~~l~e~ae~aq~ 317 (759)
|.+...++.+++..|..+-.+.+.++.+...+...+..+|.
T Consensus 103 ~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~~~~~~ 143 (145)
T COG1730 103 IEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQAAAQK 143 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 88888888999999999999999999988888777666554
No 197
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=48.96 E-value=1.1e+02 Score=26.39 Aligned_cols=48 Identities=25% Similarity=0.423 Sum_probs=36.7
Q ss_pred HHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 004361 282 ANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVANI 329 (759)
Q Consensus 282 ~~l~~ce~el~~~q~~k~elqkev~~l~e~ae~aq~~a~kaeedvani 329 (759)
+.+.....+...|..|...|+.+|+.|..-+..|+..|..|-+-.=|+
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~ 50 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNI 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445666778888999999999999988887777777777776655554
No 198
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=48.83 E-value=6.1e+02 Score=32.82 Aligned_cols=56 Identities=20% Similarity=0.141 Sum_probs=42.4
Q ss_pred hcccccCCCCCcHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhchhHHHHHHHhhhH
Q 004361 139 RETKEDAEPPTTDELRELLMNAMKELEVAQLNSTMFEEKAQRISEAAIALKDEAANAWNNVNV 201 (759)
Q Consensus 139 ~~~~~~~~~~~~~~l~e~l~~a~~ele~a~~ns~~fe~kaq~ise~ai~l~d~a~~a~~~v~~ 201 (759)
++|+-.++++.| ..+-.+|..-|.+++-+|.+....-++---|+|+-+.-..+|+.
T Consensus 165 ~eTekAig~~~l-------l~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~ 220 (1072)
T KOG0979|consen 165 VETEKAIGAEEL-------LQYHIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVER 220 (1072)
T ss_pred HHHHHhcCchhh-------HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 355555555543 33455666778888889999988888989999999999999994
No 199
>PRK03784 vtamin B12-transporter permease; Provisional
Probab=48.46 E-value=2.4e+02 Score=31.56 Aligned_cols=48 Identities=13% Similarity=0.044 Sum_probs=31.2
Q ss_pred HHHhcCCCchHHHHHHHHHhhccccc-------ccccchhh--HHHHHHHHHHHHHHH
Q 004361 619 IFQKIPGGSPVLGYLAAGILIGPYGL-------SIIRHVHG--TKAIAEFGVVFLLFN 667 (759)
Q Consensus 619 LlrRL~gLP~VVGyILAGIILGPsgL-------GlI~~~ei--Le~LAEIGLIfLLFl 667 (759)
+...+ |+|.++.-+++|..+|-.+. |.+-++.. +..-+.+|+++.+|.
T Consensus 53 ii~~~-RlPRil~a~l~G~~La~sG~llQ~l~rNpLA~P~iLGissGA~l~~~l~i~~ 109 (331)
T PRK03784 53 FVWQL-RLPRTLAVLLVGAALAVSGAVMQALFENPLAEPGLLGVSNGAGVALVAAVLL 109 (331)
T ss_pred hhHHh-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcHhhHHHHHHHHHHHHHHH
Confidence 34455 78999999999999986542 22223333 455666777666655
No 200
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=47.17 E-value=31 Score=38.37 Aligned_cols=71 Identities=15% Similarity=0.167 Sum_probs=45.6
Q ss_pred HHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHhhcCChhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004361 632 YLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHFV 706 (759)
Q Consensus 632 yILAGIILGPsgLGlI~~~eiLe~LAEIGLIfLLFlaGLELDl~~LKr~~K~iLvLAilgVLLp~~lVG~al~~l 706 (759)
-++.|+++|..--.+ .+.+..-..+-+.|+-|..|-.+|+..+.+.+-.-+.++++.++++.. ..++...+
T Consensus 177 P~iiG~iLGNLD~~~---r~fl~~~~~~lIPF~~f~lGa~inl~~i~~aGl~GIlLgv~~~~vtg~-~~~~~dr~ 247 (314)
T PF03812_consen 177 PIIIGMILGNLDPDF---RKFLAPGVPILIPFFGFALGAGINLSNIIKAGLSGILLGVIVVVVTGI-PLYLADRL 247 (314)
T ss_pred HHHHHHHHhcCCHHH---HHHHhcCCCeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHhH-HHHHHHHH
Confidence 466888888641110 122223334557789999999999999999887777788776665532 34444444
No 201
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=46.74 E-value=1.6e+02 Score=31.62 Aligned_cols=95 Identities=36% Similarity=0.395 Sum_probs=53.5
Q ss_pred CCcchhhHHHHHhhhHHHHHHHHHhhHHHHHHhhh----hHHHHHHHH------------------------HHHHHHHH
Q 004361 262 DGKEEDGLLLAAENDIKECQANLANCETELRRLQS----KKEELQKEV------------------------DRLNEVAE 313 (759)
Q Consensus 262 d~~~~~~~~~~a~~di~~~q~~l~~ce~el~~~q~----~k~elqkev------------------------~~l~e~ae 313 (759)
-+..|-|.|-.|-++|-..+..|.+-....+++++ +..++-|++ -+-...=+
T Consensus 8 rVq~eLe~LN~atd~IN~lE~~L~~ar~~fr~~l~e~~~kL~~~~kkLg~~I~karPYyea~~~a~~aq~e~q~Aa~~ye 87 (239)
T PF05276_consen 8 RVQEELEKLNQATDEINRLENELDEARATFRRLLSESTKKLNELAKKLGSCIEKARPYYEARRKAKEAQQEAQKAALQYE 87 (239)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777777777777776665555543 233333322 22222222
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHH-----------H--HHhhhcccHHHHHHHHHHh
Q 004361 314 KAQMNALKAEEDVANIMLLAEQAVAFE-----------I--EATQRVNDAEIALQRAEKS 360 (759)
Q Consensus 314 ~aq~~a~kaeedvanim~laeqava~e-----------~--ea~q~~ndaeial~ka~k~ 360 (759)
+|.-.=..|.|-|+ +|||-|... | .|+++||+||..-.+++..
T Consensus 88 rA~~~h~aAKe~v~----laEq~l~~~~~~~~D~~wqEmLn~A~~kVneAE~ek~~ae~e 143 (239)
T PF05276_consen 88 RANSMHAAAKEMVA----LAEQSLMSDSNWTFDPAWQEMLNHATQKVNEAEQEKTRAERE 143 (239)
T ss_pred HHHHHHHHHHHHHH----HHHHHHhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222223333333 677766533 2 6889999999888887764
No 202
>COG1269 NtpI Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion]
Probab=46.71 E-value=3.5e+02 Score=32.88 Aligned_cols=217 Identities=17% Similarity=0.135 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhchhHHHHHHHHhhhhhhhcchHHhhhhcccCCccccchhhhhhccchhhHHHHhcchHhhhhhhccCC
Q 004361 513 IFQGLMEYARKQLPKLVLGFLLFGAGVAFYANQAERSSLQLQQPDVITTSIEEASSNAKPLIREVKKLPKRIKKLLDMLP 592 (759)
Q Consensus 513 vf~~l~~s~~~q~pklv~g~~l~gag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~plV~~c~~~~~~~~~li~~lp 592 (759)
+|=|+| ++.+.=|++++-+|++++.+.-.+-..-...=..+....--.++.+..+...+-.. ......+|
T Consensus 370 ~fFG~M------~gD~gyGlll~l~sl~l~~~~~~~~~~~~~~l~~~~~~~~i~t~i~G~l~g~~fG~----~~~~~~~p 439 (660)
T COG1269 370 LFFGIM------FGDLGYGLLLFLISLLLLRYFKKRLPEGLKKLGKILLYLGISTIIWGFLYGEFFGP----AVLLSTLP 439 (660)
T ss_pred HHHHHH------HHhHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHHhccccCC----ccccccCC
Q ss_pred --ccccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhc------ccccccccchhhHHHHHHHHHHHH
Q 004361 593 --EQEINEEEASLFDVLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIG------PYGLSIIRHVHGTKAIAEFGVVFL 664 (759)
Q Consensus 593 --~~~~~~~~~lLlqL~LILlaA~LLg~LlrRL~gLP~VVGyILAGIILG------PsgLGlI~~~eiLe~LAEIGLIfL 664 (759)
....-++..-.+....++.++.++|.+ .+..|+++| +...--.--+..+-++..+|++++
T Consensus 440 ~~~~~~~~~~~~~~~~~~~m~~sl~iG~~------------hl~~G~~lg~~~~~~~~~~~~a~~~~~~w~~~~~G~~~~ 507 (660)
T COG1269 440 IGLLFVYHGLDEGLLFSNILILSLLIGVL------------HLSLGLLLGFINRVRSGDIKGAILPQLLWLLIILGLLLL 507 (660)
T ss_pred cccccccccccchhhHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHhhcchHHHhhhhHHHHHHHHHHHHH
Q ss_pred HHHHhhcCChhHHhhhhhhHHHHHHHHHHHHHHHHH-------------HHHHHHhCCChHHHHHHHHHHhhccHHHHHH
Q 004361 665 LFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVG-------------LVAHFVSGLPGPASIVIGNGLALSSTAVVLQ 731 (759)
Q Consensus 665 LFlaGLELDl~~LKr~~K~iLvLAilgVLLp~~lVG-------------~al~~lLGls~~~ALLLGaILSaTSpaVVv~ 731 (759)
++...+.. +..+..........|.+++++...++. ..+.-++|-....+-++|..++....+.++.
T Consensus 508 ~~~~~~~~-~~l~~~~~~~~~~~g~~~llvv~~i~~~~~~~~~~~i~~~~~~~~~~s~i~SY~RL~Al~La~~~ia~~~n 586 (660)
T COG1269 508 ILGYKWSV-PELLGMVGAMFGAFGILGLLVVGLILVPGLVAIGQGILGFEGVLSLLSDVLSYLRLLALGLAGASIASVVN 586 (660)
T ss_pred HHHhhhcc-cchhhHHHHHhhhccHHHHHHHHHHHcchHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHcCCCCChhHHHHHHHHHH
Q 004361 732 VLQERGESTSRHGRATFSVLLF 753 (759)
Q Consensus 732 VLkELGLLnSe~GRlaLSalVL 753 (759)
.+.-.-.-..+.| .++++.++
T Consensus 587 ~m~~~~~~~~~~~-~i~giii~ 607 (660)
T COG1269 587 LMTGLLIGSVPFG-IILGIIIL 607 (660)
T ss_pred HHHHHhcccccch-HHHHHHHH
No 203
>PF05884 ZYG-11_interact: Interactor of ZYG-11; InterPro: IPR008574 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=46.54 E-value=4.7e+02 Score=29.36 Aligned_cols=30 Identities=10% Similarity=0.101 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHcCCCCC
Q 004361 712 PASIVIGNGLALSSTAVVLQVLQERGESTS 741 (759)
Q Consensus 712 ~~ALLLGaILSaTSpaVVv~VLkELGLLnS 741 (759)
...+++.++-+.++...+.=..++.+..+.
T Consensus 244 ~~YllLt~lYTl~s~~~IQIa~r~~~~~~~ 273 (299)
T PF05884_consen 244 FSYLLLTALYTLASIAPIQIAFRNQTDIDM 273 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCccch
Confidence 366677777777776666645555554443
No 204
>PF07136 DUF1385: Protein of unknown function (DUF1385); InterPro: IPR010787 This family contains a number of hypothetical bacterial proteins of unknown function approximately 300 residues in length. Some family members are predicted to be metal-dependent.
Probab=46.48 E-value=3.1e+02 Score=29.60 Aligned_cols=87 Identities=17% Similarity=0.176 Sum_probs=49.1
Q ss_pred HHHHHHhhcCChhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCC-hHHHHHHHHHHhhccHHHHHHHHHHcCCCCC
Q 004361 663 FLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHFVSGLP-GPASIVIGNGLALSSTAVVLQVLQERGESTS 741 (759)
Q Consensus 663 fLLFlaGLELDl~~LKr~~K~iLvLAilgVLLp~~lVG~al~~lLGls-~~~ALLLGaILSaTSpaVVv~VLkELGLLnS 741 (759)
+-.+..|.+++++..++..+.--.=|+ .+++-+++++.++..++|++ +..-++.-.++-+--.++.+.+++=.+....
T Consensus 118 I~~yE~g~~Ltvenvrk~sr~HpRCGT-sFl~~vl~vsI~vf~~~~~~~~~~r~~~ri~llPvvagisYEiir~~~~~~~ 196 (236)
T PF07136_consen 118 INCYEAGEELTVENVRKYSRLHPRCGT-SFLLIVLIVSILVFSFIGWPSLWWRILSRILLLPVVAGISYEIIRWAGRSDN 196 (236)
T ss_pred HHhhcCCCCCCHHHHHhcCCcCCCcch-hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc
Confidence 456677888888888875432111111 11111222333333344543 3444556666666777777788877776666
Q ss_pred hhHHHHHHH
Q 004361 742 RHGRATFSV 750 (759)
Q Consensus 742 e~GRlaLSa 750 (759)
++.+++..-
T Consensus 197 ~l~~~l~~P 205 (236)
T PF07136_consen 197 PLVRILSAP 205 (236)
T ss_pred HHHHHHHhH
Confidence 888877654
No 205
>PRK10698 phage shock protein PspA; Provisional
Probab=46.12 E-value=3.4e+02 Score=28.61 Aligned_cols=48 Identities=19% Similarity=0.218 Sum_probs=33.6
Q ss_pred HHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 004361 269 LLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQ 316 (759)
Q Consensus 269 ~~~~a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l~e~ae~aq 316 (759)
....|-.+.+.|+..++.++.++...+...++|+..+.+|..+-+.++
T Consensus 86 LAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak 133 (222)
T PRK10698 86 LARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETR 133 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445566777777777777777777777777777777777666554
No 206
>PRK11281 hypothetical protein; Provisional
Probab=45.88 E-value=2.1e+02 Score=36.96 Aligned_cols=47 Identities=21% Similarity=0.189 Sum_probs=29.7
Q ss_pred cCCCCcchhhHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHH
Q 004361 259 AKSDGKEEDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEV 305 (759)
Q Consensus 259 ~~~d~~~~~~~~~~a~~di~~~q~~l~~ce~el~~~q~~k~elqkev 305 (759)
-+....+.+..+..+|++..+....|++-..+.+|.|.+..+.+...
T Consensus 126 LEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~Rl 172 (1113)
T PRK11281 126 LESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRL 172 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 34444556666677777777777777777766666666655555543
No 207
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=45.70 E-value=3.5e+02 Score=27.71 Aligned_cols=10 Identities=40% Similarity=0.491 Sum_probs=4.5
Q ss_pred ChHHHHHHHH
Q 004361 710 PGPASIVIGN 719 (759)
Q Consensus 710 s~~~ALLLGa 719 (759)
++...+++|+
T Consensus 179 ~~~~~iiig~ 188 (206)
T PF06570_consen 179 PPWVYIIIGV 188 (206)
T ss_pred CHHHHHHHHH
Confidence 3444444443
No 208
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=45.69 E-value=2.1e+02 Score=25.00 Aligned_cols=16 Identities=25% Similarity=0.401 Sum_probs=12.1
Q ss_pred HHHHHhHHHHHHHHHH
Q 004361 206 VHEIVNEECIAKEAVH 221 (759)
Q Consensus 206 iq~~~~~e~~akeav~ 221 (759)
.|.-+..|.-||++++
T Consensus 2 lQsaL~~EirakQ~~~ 17 (61)
T PF08826_consen 2 LQSALEAEIRAKQAIQ 17 (61)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHH
Confidence 4667777888888877
No 209
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=45.15 E-value=53 Score=27.82 Aligned_cols=34 Identities=26% Similarity=0.516 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHH
Q 004361 275 NDIKECQANLANCETELRRLQSKKEELQKEVDRL 308 (759)
Q Consensus 275 ~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l 308 (759)
.++...+..+...+.+++.++.+.++|++++++|
T Consensus 17 ~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 17 SRYYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455666677777777777777777777777777
No 210
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=45.10 E-value=1.4e+02 Score=32.13 Aligned_cols=9 Identities=22% Similarity=0.479 Sum_probs=3.4
Q ss_pred cHHHHHHHH
Q 004361 725 STAVVLQVL 733 (759)
Q Consensus 725 SpaVVv~VL 733 (759)
|.|+...++
T Consensus 98 s~pl~l~iF 106 (301)
T PF14362_consen 98 SEPLELKIF 106 (301)
T ss_pred HHHHHHHHH
Confidence 333333333
No 211
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=44.67 E-value=1.6e+02 Score=29.76 Aligned_cols=37 Identities=30% Similarity=0.389 Sum_probs=29.3
Q ss_pred HHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHH
Q 004361 270 LLAAENDIKECQANLANCETELRRLQSKKEELQKEVD 306 (759)
Q Consensus 270 ~~~a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~ 306 (759)
.....+||++-+..|...+.++..++.+.+.||+|-|
T Consensus 156 ~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~eyd 192 (192)
T PF05529_consen 156 NKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKEYD 192 (192)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3445677888888888888888888888888888854
No 212
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=44.58 E-value=1.2e+02 Score=34.94 Aligned_cols=103 Identities=19% Similarity=0.279 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC------CCchHHHHHHHHHhhcccccccccchhhHHHHHHH---HHHHHHHHHh----
Q 004361 603 LFDVLWLLLASVIFVPIFQKIP------GGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEF---GVVFLLFNIG---- 669 (759)
Q Consensus 603 LlqL~LILlaA~LLg~LlrRL~------gLP~VVGyILAGIILGPsgLGlI~~~eiLe~LAEI---GLIfLLFlaG---- 669 (759)
+-.+.++++++.+++.+-+|+| +-|+++..+.+-.+.- .|++++ +.+..+.++ .-.+.+|.++
T Consensus 48 lg~favm~vlG~llg~IG~riPI~nk~iGG~aIl~~fvaa~~v~---~~llp~-~~i~avt~fm~~snFL~fyIA~LI~G 123 (438)
T COG3493 48 LGGFAVMFVLGALLGEIGKRIPIVNKYIGGGAILALFVAAYLVF---YNLLPS-NVIKAVTNFMGKSNFLDFYIAALIVG 123 (438)
T ss_pred HHHHHHHHHHHHHHHHhcccCcchhhccCCchHHHHHHHHHHHH---hccCCH-HHHHHHHHHhcCCChHHHHHHHHHHh
Confidence 4466777788889988877763 3355554333332221 233432 222222222 1223333333
Q ss_pred --hcCChhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 004361 670 --LELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHFVSGLP 710 (759)
Q Consensus 670 --LELDl~~LKr~~K~iLvLAilgVLLp~~lVG~al~~lLGls 710 (759)
|.+|.+.+-+...+.+..-+++++.. .++|.+.+.++|++
T Consensus 124 SILgmnRklLIk~~~~~i~~il~g~v~A-~~~g~lVG~~~G~~ 165 (438)
T COG3493 124 SILGMNRKLLIKSLKRYIPPILAGMVGA-AAVGILVGLLFGLS 165 (438)
T ss_pred hhhhccHHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHHHhCCC
Confidence 46677766665554444444444433 33455555566654
No 213
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=44.50 E-value=1.3e+02 Score=34.94 Aligned_cols=43 Identities=21% Similarity=0.354 Sum_probs=32.7
Q ss_pred HhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 004361 273 AENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKA 315 (759)
Q Consensus 273 a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l~e~ae~a 315 (759)
.-+++.+.++.|...+.++++++.++.-+++...-|..+.+.+
T Consensus 69 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 111 (525)
T TIGR02231 69 DPERLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGL 111 (525)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4457777778888888888888888888888887777776543
No 214
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=44.29 E-value=1.4e+02 Score=35.42 Aligned_cols=37 Identities=14% Similarity=0.204 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHhhcCChhHHhhhhhhHHHHHH
Q 004361 653 TKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGS 689 (759)
Q Consensus 653 Le~LAEIGLIfLLFlaGLELDl~~LKr~~K~iLvLAi 689 (759)
.+-++.+.=|.+.|..||=..+..++...-+.+.+++
T Consensus 270 ~dG~twlaQI~MFlvLGLLvtPsql~~iavPailL~l 306 (574)
T COG3263 270 FDGLAWLAQILMFLVLGLLVTPSQLLPIAIPAILLSL 306 (574)
T ss_pred hccHHHHHHHHHHHHHHHhcCHhhhhHhhHHHHHHHH
Confidence 3445566666677788999999998875544444444
No 215
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=44.13 E-value=2.6e+02 Score=32.47 Aligned_cols=45 Identities=20% Similarity=0.181 Sum_probs=30.2
Q ss_pred hhhHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHH
Q 004361 266 EDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNE 310 (759)
Q Consensus 266 ~~~~~~~a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l~e 310 (759)
=.+.+..-.+.+.++.+.+..++.+++.++.++.+||++..+|.-
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 129 WFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344455556667777777777777777777777777777665543
No 216
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=43.84 E-value=3e+02 Score=26.35 Aligned_cols=44 Identities=23% Similarity=0.338 Sum_probs=25.1
Q ss_pred hhhHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHH
Q 004361 266 EDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLN 309 (759)
Q Consensus 266 ~~~~~~~a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l~ 309 (759)
-++|..-=...+..++..+.+++.+|..++.+.++++..+.++.
T Consensus 92 ~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~ 135 (140)
T PRK03947 92 LDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQ 135 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555666666666666666666666555555543
No 217
>PRK02224 chromosome segregation protein; Provisional
Probab=43.73 E-value=7.1e+02 Score=30.64 Aligned_cols=46 Identities=26% Similarity=0.338 Sum_probs=24.5
Q ss_pred cHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhchhHHHHH
Q 004361 150 TDELRELLMNAMKELEVAQLNSTMFEEKAQRISEAAIALKDEAANA 195 (759)
Q Consensus 150 ~~~l~e~l~~a~~ele~a~~ns~~fe~kaq~ise~ai~l~d~a~~a 195 (759)
.++|+..|..-..++......-..++++..++.+..-.++.++...
T Consensus 323 ~~el~~~l~~~~~~l~~~~~~~e~~~~~~~~le~~~~~l~~~~~~l 368 (880)
T PRK02224 323 DEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAEL 368 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555544444444444444566666666666665555555433
No 218
>TIGR02854 spore_II_GA sigma-E processing peptidase SpoIIGA. Members of this protein family are the stage II sporulation protein SpoIIGA. This protein acts as an activating protease for Sigma-E, one of several specialized sigma factors of the sporulation process in Bacillus subtilis and related endospore-forming bacteria.
Probab=43.60 E-value=2.2e+02 Score=30.93 Aligned_cols=64 Identities=20% Similarity=0.166 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhccc--ccccccchh-hHHHHHHHHHHHHHHHHhhcC
Q 004361 601 ASLFDVLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPY--GLSIIRHVH-GTKAIAEFGVVFLLFNIGLEL 672 (759)
Q Consensus 601 ~lLlqL~LILlaA~LLg~LlrRL~gLP~VVGyILAGIILGPs--gLGlI~~~e-iLe~LAEIGLIfLLFlaGLEL 672 (759)
.++++.+++++.+.++..-.+ -.-+++|-++|.. .+-+.+... ....+..+.+.++|-.+++..
T Consensus 12 Nf~~d~~LL~~t~~~lk~~~~--------~~Rll~ga~iGa~~~~~~~~p~~~~~~~~~~k~~~s~lmv~iafg~ 78 (288)
T TIGR02854 12 NFIIDYFLLYLTARTLKDKVS--------QWRLLLAALIGSLYVLFMFTPKASFFTSPIAKLLYSFLIIFIAFGP 78 (288)
T ss_pred HHHHHHHHHHHHHHHhhccch--------HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 566777777776666543322 2356666666643 122333332 345566666777777776654
No 219
>COG5505 Predicted integral membrane protein [Function unknown]
Probab=43.59 E-value=4.8e+02 Score=29.80 Aligned_cols=99 Identities=10% Similarity=0.104 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHhc---CCCchHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHhhcCChhHHhhh
Q 004361 604 FDVLWLLLASVIFVPIFQKI---PGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSM 680 (759)
Q Consensus 604 lqL~LILlaA~LLg~LlrRL---~gLP~VVGyILAGIILGPsgLGlI~~~eiLe~LAEIGLIfLLFlaGLELDl~~LKr~ 680 (759)
..++++...+...-++=+|+ .-.|.++-..+..+..-..++-.. .......+-+--+....|+.=++.|++.+.+.
T Consensus 7 ~~~~fl~~~aa~~i~lE~~~kwk~~Vpa~v~iy~gamff~t~Glfs~-~S~~y~~v~n~llpamI~lmLlqcd~Rki~Kl 85 (384)
T COG5505 7 VLWGFLAVWAAVSIGLEQRFKWKSAVPAAVIIYAGAMFFTTVGLFSV-ESPVYDTVWNYLLPAMIPLMLLQCDVRKIFKL 85 (384)
T ss_pred hHHHHHHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHhhcccccc-cCcHHHHHHHHHHHHHHHHHHHHccHHHHHhh
Confidence 34444445454444444454 135666633333344433332211 12223334444444445555578999999998
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q 004361 681 KKYVFGLGSAQVLVTAVVVGLVAHF 705 (759)
Q Consensus 681 ~K~iLvLAilgVLLp~~lVG~al~~ 705 (759)
+++.+.+-+...+.+ ++|++++|
T Consensus 86 g~rll~ifli~sv~~--vlGfIl~y 108 (384)
T COG5505 86 GRRLLFIFLISSVGT--VLGFILAY 108 (384)
T ss_pred cchhhHHHHHHHHHH--HHHHHHHH
Confidence 887664443333222 34555544
No 220
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=43.50 E-value=1.8e+02 Score=35.72 Aligned_cols=57 Identities=26% Similarity=0.352 Sum_probs=31.0
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH----------HHHHHHHHHHHHHHhhh
Q 004361 290 ELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVANI----------MLLAEQAVAFEIEATQR 346 (759)
Q Consensus 290 el~~~q~~k~elqkev~~l~e~ae~aq~~a~kaeedvani----------m~laeqava~e~ea~q~ 346 (759)
+|..++.++..|+..-.+|.|.-+.|...-.+=..-+.++ |+.||++-+.||+..+.
T Consensus 580 ~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~ 646 (717)
T PF10168_consen 580 ELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKD 646 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHH
Confidence 4444555555555555555554444443333333323322 56799999999986543
No 221
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=43.46 E-value=1.5e+02 Score=35.81 Aligned_cols=82 Identities=20% Similarity=0.232 Sum_probs=52.8
Q ss_pred HHHHHHHhhhhccCCCCCCCCcccccCCCCcchhhHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 004361 234 LQVAIESLQDVKQEDDYPEGSTEDDAKSDGKEEDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAE 313 (759)
Q Consensus 234 lq~a~e~~~~~~~~~~~~~~s~~~~~~~d~~~~~~~~~~a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l~e~ae 313 (759)
|.+-++|+++.....++.-.|-+ ++.+. .-++|-..-++..-.||++++.|..|||.|+.++|-+-|
T Consensus 51 lt~~qdA~~~~~~~~~p~~~s~~---------~~s~~----r~~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiE 117 (907)
T KOG2264|consen 51 LTTLQDALKQNIENLDPYDASCS---------GYSIG----RILREQKRILASVSLELTELEVKRQELNSEIEEINTKIE 117 (907)
T ss_pred eecccccchhcccccCccccccc---------chhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 34445666665555555444331 12222 225555566777788999999999999999999998888
Q ss_pred HHHHHHhhhHHHHHH
Q 004361 314 KAQMNALKAEEDVAN 328 (759)
Q Consensus 314 ~aq~~a~kaeedvan 328 (759)
.-|-.-.++.-+...
T Consensus 118 elk~~i~~~q~eL~~ 132 (907)
T KOG2264|consen 118 ELKRLIPQKQLELSA 132 (907)
T ss_pred HHHHHHHHhHHHHHH
Confidence 766655555555443
No 222
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=43.30 E-value=5.5e+02 Score=31.05 Aligned_cols=26 Identities=23% Similarity=0.240 Sum_probs=18.7
Q ss_pred CCcHHHHHHHHHHHHHHHHHhhhhhH
Q 004361 148 PTTDELRELLMNAMKELEVAQLNSTM 173 (759)
Q Consensus 148 ~~~~~l~e~l~~a~~ele~a~~ns~~ 173 (759)
.+....+|+|+=...|||.+-+..--
T Consensus 181 ~e~~~~~d~L~fq~~Ele~~~l~~gE 206 (557)
T COG0497 181 RERAQRADLLQFQLEELEELNLQPGE 206 (557)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCch
Confidence 34667788888888888877665543
No 223
>PF03594 BenE: Benzoate membrane transport protein; InterPro: IPR004711 The benzoate:H+ symporter (BenE) family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter [, ]. Proteins in this family are about 400 residues in length and probably span the membrane 12 times. They exhibit about 30% identity to each other and limited sequence similarity to members of the aromatic acid:H+symporter (AAHS) family of the major facilitator superfamily (MFS). However the degree of similarity with the latter proteins is insufficient to establish homology. Thus, in spite of the sequence similarity and their similar substrate specificities, the BenE family must be considered separately. This family is classified as TC number 2.A.46 under the transporter classification (TC) system [].; GO: 0016021 integral to membrane
Probab=43.27 E-value=4.3e+02 Score=30.49 Aligned_cols=28 Identities=14% Similarity=-0.015 Sum_probs=20.6
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHH
Q 004361 726 TAVVLQVLQERGESTSRHGRATFSVLLFQ 754 (759)
Q Consensus 726 paVVv~VLkELGLLnSe~GRlaLSalVLq 754 (759)
-...+.+|+..|. +.|...++..+.+.+
T Consensus 224 nlpG~aVL~a~GY-~~p~~~~~~~tGl~s 251 (378)
T PF03594_consen 224 NLPGIAVLRAAGY-QPPVNPLITVTGLAS 251 (378)
T ss_pred chHHHHHHHHcCC-CCCchHHHHHHHHHH
Confidence 3446778999887 788888877776654
No 224
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=42.36 E-value=9.1e+02 Score=31.51 Aligned_cols=30 Identities=17% Similarity=0.251 Sum_probs=16.7
Q ss_pred HHhhhhccCCCCCCCchhhhcc-cCCccccc
Q 004361 468 EMQKDLTRESSPVNAPKTLQKK-SSRFFPAS 497 (759)
Q Consensus 468 e~~~~~~~~~~~~~apka~~kk-ssrff~as 497 (759)
|.-+=..++-.|.|+-++..-. +..||+-+
T Consensus 607 Ea~~~m~s~~~p~n~~~aytldg~~~~~~g~ 637 (1074)
T KOG0250|consen 607 EAREFMQSDKPPANVTKAYTLDGRQIFAGGP 637 (1074)
T ss_pred HHHHHHhcCCCCccceeeeccCccccccCCC
Confidence 3333344555677788876544 44555554
No 225
>PRK03612 spermidine synthase; Provisional
Probab=41.98 E-value=1.7e+02 Score=34.29 Aligned_cols=20 Identities=15% Similarity=0.276 Sum_probs=12.0
Q ss_pred hHHHHHHHHHhhcccccccc
Q 004361 628 PVLGYLAAGILIGPYGLSII 647 (759)
Q Consensus 628 ~VVGyILAGIILGPsgLGlI 647 (759)
.+++..++|+-+|....+.+
T Consensus 54 ~ii~~fl~glalGs~l~~~~ 73 (521)
T PRK03612 54 TVIGLMLFAMGVGALLSKYL 73 (521)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 45666677777776544443
No 226
>PF01032 FecCD: FecCD transport family; InterPro: IPR000522 This is a subfamily of bacterial binding-protein-dependent transport systems family, and includes transport system permease proteins involved in the transport across the membrane of several compounds. This entry contains the inner components of this multicomponent transport system.; GO: 0005215 transporter activity, 0016020 membrane; PDB: 4DBL_A 1L7V_B 2QI9_B 2NQ2_A.
Probab=41.96 E-value=1.1e+02 Score=33.35 Aligned_cols=47 Identities=15% Similarity=0.220 Sum_probs=26.9
Q ss_pred HhcCCCchHHHHHHHHHhhccccc-------ccccchh--hHHHHHHHHHHHHHHHH
Q 004361 621 QKIPGGSPVLGYLAAGILIGPYGL-------SIIRHVH--GTKAIAEFGVVFLLFNI 668 (759)
Q Consensus 621 rRL~gLP~VVGyILAGIILGPsgL-------GlI~~~e--iLe~LAEIGLIfLLFla 668 (759)
..+ |+|+++.-+++|..+|-.+. |.+-+++ .+...+.+|.++.++..
T Consensus 39 ~~~-RlPR~l~a~l~G~~La~sG~~lQ~~~rNpLA~P~iLGissgA~lg~~~~~~~~ 94 (311)
T PF01032_consen 39 WDL-RLPRILAAILVGAALALSGALLQTLTRNPLADPSILGISSGASLGAVLAILLF 94 (311)
T ss_dssp CCT-CHHHHHHHHHHHHHHHHHHHHHHHHTT-TT--TTTTTHHHHHHHHHHHHHHCC
T ss_pred hHH-HHHHHHHHHHhHHHHHHHHHHHHHHhCCCccccccchHhHHHHHHHHHHHHHh
Confidence 344 77888888888888774431 1121222 34556666666666554
No 227
>PF13386 DsbD_2: Cytochrome C biogenesis protein transmembrane region
Probab=41.95 E-value=2.2e+02 Score=28.76 Aligned_cols=43 Identities=26% Similarity=0.370 Sum_probs=22.1
Q ss_pred hHHHHHHHHHhhcccccccc--cchhhHHHHHHHHHHHHHHHHhh
Q 004361 628 PVLGYLAAGILIGPYGLSII--RHVHGTKAIAEFGVVFLLFNIGL 670 (759)
Q Consensus 628 ~VVGyILAGIILGPsgLGlI--~~~eiLe~LAEIGLIfLLFlaGL 670 (759)
.+++|.+.|+++|-.+-.+. .....++.+..+.+++++...|+
T Consensus 42 Ri~sY~llG~l~g~~G~~l~~~~~~~~l~~~~~~~~~~~~l~~gl 86 (199)
T PF13386_consen 42 RILSYTLLGALAGLLGSGLSLSGWLPGLRRIIGILLGLLGLFLGL 86 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 35678888888875543221 12234555555544444444333
No 228
>TIGR03480 HpnN hopanoid biosynthesis associated RND transporter like protein HpnN. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins appear to be related to the RND family of export proteins, particularly the hydrophobe/amphiphile efflux-3 (HAE3) family represented by TIGR00921.
Probab=41.89 E-value=2.8e+02 Score=34.29 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=12.5
Q ss_pred HHHHHHHHHHhhccHHHHHHHHH
Q 004361 712 PASIVIGNGLALSSTAVVLQVLQ 734 (759)
Q Consensus 712 ~~ALLLGaILSaTSpaVVv~VLk 734 (759)
...+.+|++.+.-..-++.|.|-
T Consensus 834 G~~~~~gi~~~l~~~l~~lPall 856 (862)
T TIGR03480 834 GILLSLGLGLTLLCTLIFLPALL 856 (862)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 34445555555555556666653
No 229
>PF13166 AAA_13: AAA domain
Probab=41.87 E-value=6.8e+02 Score=29.90 Aligned_cols=141 Identities=20% Similarity=0.299 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhchhHHHHHHHhhhHhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 004361 150 TDELRELLMNAMKELEVAQLNSTMFEEKAQRISEAAIALKDEAANAWNNVNVTLDMVHEIVNEECIAKEAVHKATMALSL 229 (759)
Q Consensus 150 ~~~l~e~l~~a~~ele~a~~ns~~fe~kaq~ise~ai~l~d~a~~a~~~v~~~l~~iq~~~~~e~~akeav~~atmalsl 229 (759)
..+++..+......++. +.+.+++|...++. .+.+ +.....+..++..++.+...+.+--..-....
T Consensus 324 ~~~~~~~~~~l~~~l~~---l~~~L~~K~~~~~~-~~~~-~~~~~~~~~l~~~i~~~n~~i~~~n~~~~~~~-------- 390 (712)
T PF13166_consen 324 KEELKSAIEALKEELEE---LKKALEKKIKNPSS-PIEL-EEINEDIDELNSIIDELNELIEEHNEKIDNLK-------- 390 (712)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHhcccc-cccc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Q ss_pred HHHHHHHHHHHhhhhccCCCCCCCCcccccCCCCcchhhHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHH
Q 004361 230 AEARLQVAIESLQDVKQEDDYPEGSTEDDAKSDGKEEDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLN 309 (759)
Q Consensus 230 aearlq~a~e~~~~~~~~~~~~~~s~~~~~~~d~~~~~~~~~~a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l~ 309 (759)
.++.-+.+.+.. ........+|...+..+.+.+.++..++.++..++.++..++
T Consensus 391 --~~~~~~~~~~~~------------------------~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 444 (712)
T PF13166_consen 391 --KEQNELKDKLWL------------------------HLIAKLKEDIEEYQKEIKELEKEINSLEKKLKKAKEEIKKIE 444 (712)
T ss_pred --HHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhhhHHHHHHH
Q 004361 310 EVAEKAQMNALKAEEDVANI 329 (759)
Q Consensus 310 e~ae~aq~~a~kaeedvani 329 (759)
......+-.-.+-+.-+..|
T Consensus 445 ~~i~~l~~~~~~~~~~~~~i 464 (712)
T PF13166_consen 445 KEIKELEAQLKNTEPAADRI 464 (712)
T ss_pred HHHHHHHHHHhhhHHHHHHH
No 230
>PF11727 ISG65-75: Invariant surface glycoprotein; InterPro: IPR021057 This family is found in Trypanosome species, and appears to be one of two invariant surface glycoproteins, ISG65 and ISG75, that are found in the mammalian stage of the parasitic protozoan. The sequence suggests the two families are polypeptides with N-terminal signal sequences, hydrophilic extracellular domains, single trans-membrane alpha-helices and short cytoplasmic domains. They are both expressed in the bloodstream form but not in the midgut stage. Both polypeptides are distributed over the entire surface of the parasite [, ].
Probab=41.67 E-value=2.2e+02 Score=30.81 Aligned_cols=73 Identities=22% Similarity=0.293 Sum_probs=48.3
Q ss_pred hhhHHHHHHHHHhhHHHHHHhhhhHHHHH---------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 004361 274 ENDIKECQANLANCETELRRLQSKKEELQ---------KEVDRLNEVAEKAQMNALKAEEDVANIMLLAEQAVAFEIEAT 344 (759)
Q Consensus 274 ~~di~~~q~~l~~ce~el~~~q~~k~elq---------kev~~l~e~ae~aq~~a~kaeedvanim~laeqava~e~ea~ 344 (759)
....++-+..+..-+.-..++..+.+.|+ ..++++.++.+.|+....++-+.+..+|..++.....=++|+
T Consensus 58 d~l~~~~~~~~~~i~~~~~~v~~~~~~l~~~~~~~l~~~~~~kl~~~~~~a~~~~~~~~~~a~~~~~~~~~~~~~ak~aa 137 (286)
T PF11727_consen 58 DYLVKETEDFLGDIKLHKEQVDHRVERLRSLEKGKLTDSDVKKLKEICEEAKKKNTEQLEEAKKAMEEAEETHEEAKEAA 137 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555666666666666666666 777788888888888777777777777777776655545554
Q ss_pred hh
Q 004361 345 QR 346 (759)
Q Consensus 345 q~ 346 (759)
..
T Consensus 138 ~~ 139 (286)
T PF11727_consen 138 AK 139 (286)
T ss_pred HH
Confidence 43
No 231
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=41.41 E-value=2.1e+02 Score=32.56 Aligned_cols=138 Identities=18% Similarity=0.335 Sum_probs=78.9
Q ss_pred hccCCccccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhccccc-ccccchhhHHHHHHHHHHHHHH
Q 004361 588 LDMLPEQEINEEEASLFDVLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGL-SIIRHVHGTKAIAEFGVVFLLF 666 (759)
Q Consensus 588 i~~lp~~~~~~~~~lLlqL~LILlaA~LLg~LlrRL~gLP~VVGyILAGIILGPsgL-GlI~~~eiLe~LAEIGLIfLLF 666 (759)
+.+-++.+.+..+-.++-+++.++++.++ |.--|++|.+..|.++--++. ..+.+ ..-+.+.++.-+|+-.
T Consensus 181 I~M~~~r~Vsk~ekiiFpivv~~~~~ll~-------P~a~pLig~Lm~Gnl~rEsgv~~rLs~-taqn~l~nivTi~LGl 252 (360)
T PF03977_consen 181 IRMKQLRPVSKTEKIIFPIVVTILVGLLL-------PSAAPLIGMLMFGNLLRESGVVERLSK-TAQNELMNIVTIFLGL 252 (360)
T ss_pred ccCCCCCCCChHHHHHHHHHHHHHHHHHc-------cchHHHHHHHHHHHHHHHhccHHHHHH-HHHHHHHHHHHHHHHH
Confidence 33434444444545556655555555442 344567899999999987653 22211 1225677888889999
Q ss_pred HHhhcCChhHHhhhhh-hHHHHHHHHHHHHHHHHHHHHHHH----hCCChHHHHHHHHHHhhccHHHHHHHHHHcC
Q 004361 667 NIGLELSVERLSSMKK-YVFGLGSAQVLVTAVVVGLVAHFV----SGLPGPASIVIGNGLALSSTAVVLQVLQERG 737 (759)
Q Consensus 667 laGLELDl~~LKr~~K-~iLvLAilgVLLp~~lVG~al~~l----LGls~~~ALLLGaILSaTSpaVVv~VLkELG 737 (759)
.+|..+.-+.+.+... .++.+|++.+.+..+ .|.+.+++ .+-..+ -++|+ ...|+.|+..++-+..+
T Consensus 253 ~vGat~~a~~fL~~~tl~I~~LGl~Af~~~ta-gGvl~~k~mn~f~k~KiN--PlIGa-AGVSAvPmaARV~qk~~ 324 (360)
T PF03977_consen 253 TVGATMTAETFLNPQTLKILVLGLVAFAFSTA-GGVLFAKLMNLFSKGKIN--PLIGA-AGVSAVPMAARVAQKVG 324 (360)
T ss_pred HHHHhccHHHhcCHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHhCCCCC--chhhh-hhhccCCchHHHHHHHH
Confidence 9999999998876433 356677776666532 34443332 232211 12333 23456666666655543
No 232
>PF02632 BioY: BioY family; InterPro: IPR003784 BioMNY proteins are considered to constitute tripartite biotin transporters in prokaryotes. One-third of the widespread bioY genes are linked to bioMN. Many bioY genes are located at loci encoding biotin biosynthesis, while others are unlinked to biotin metabolic or transport genes. BioY is a high-capacity transporter that is converted to a high-affinity system in the presence of BioMN. BioMNY-mediated biotin uptake is severely impaired by the replacement of the Walker A lysine residue in BioM, demonstrating the dependency of high-affinity transport on a functional ATPase [].
Probab=41.40 E-value=3.6e+02 Score=26.80 Aligned_cols=107 Identities=20% Similarity=0.173 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhccccccc------c-cc-hhhHHHHHHHHHHHHHHHHhhcCCh
Q 004361 603 LFDVLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSI------I-RH-VHGTKAIAEFGVVFLLFNIGLELSV 674 (759)
Q Consensus 603 LlqL~LILlaA~LLg~LlrRL~gLP~VVGyILAGIILGPsgLGl------I-~~-~eiLe~LAEIGLIfLLFlaGLELDl 674 (759)
-+|...+++++.++++-..-+ .++.|++.|.+==|..-|. + .+ -.++ +|+++.-+.+|+-.+-
T Consensus 9 TlQt~~v~l~g~~Lg~~~g~~----s~~~YlllG~~GlPVFagg~gG~~~l~gPTgGyl-----~gf~~~a~i~g~~~~~ 79 (148)
T PF02632_consen 9 TLQTLAVMLAGLLLGPRRGFL----SVLLYLLLGAIGLPVFAGGSGGLGYLLGPTGGYL-----LGFPLAALIIGLLAER 79 (148)
T ss_pred hHHHHHHHHHHHHHChHHHHH----HHHHHHHHHHHCCchhcCCCCchHHHhcCCChHH-----HHHHHHHHHHHHHHHh
Confidence 467666777776665533333 5667999986522432222 1 11 1222 5677777777764322
Q ss_pred hHHhhhhhhHHHHHHHHHHHHHHHHHHHH-HHHhCCChHHHHHHHH
Q 004361 675 ERLSSMKKYVFGLGSAQVLVTAVVVGLVA-HFVSGLPGPASIVIGN 719 (759)
Q Consensus 675 ~~LKr~~K~iLvLAilgVLLp~~lVG~al-~~lLGls~~~ALLLGa 719 (759)
..-++.....+...+.+.++.. ++|..- ++..++++..++..+.
T Consensus 80 ~~~~~~~~~~~~~~~~g~~iiy-~~G~~~l~~~~~~~~~~al~~g~ 124 (148)
T PF02632_consen 80 LKRSRSFLRLILAMLVGLLIIY-IFGIIWLAFVTGMSLSKALAAGV 124 (148)
T ss_pred ccccchHHHHHHHHHHHHHHHH-HhHHHHHHHHHCCCHHHHHHHHh
Confidence 1111123333444455555543 244331 2224677777766655
No 233
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.08 E-value=1.2e+02 Score=33.16 Aligned_cols=57 Identities=19% Similarity=0.395 Sum_probs=43.8
Q ss_pred HHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 004361 270 LLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDV 326 (759)
Q Consensus 270 ~~~a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l~e~ae~aq~~a~kaeedv 326 (759)
+...+..|.+.+.++.+.+.+|.+|+.+.+++|++++.+++.-.+-+-.-.+.+.+.
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI 89 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEI 89 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677889999999999999999999999999999988877665544444444433
No 234
>COG1301 GltP Na+/H+-dicarboxylate symporters [Energy production and conversion]
Probab=40.90 E-value=6.4e+02 Score=29.33 Aligned_cols=88 Identities=19% Similarity=0.222 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHHHHHHHhhcCChhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCh---------HHHHHHHHHHh
Q 004361 652 GTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHFVSGLPG---------PASIVIGNGLA 722 (759)
Q Consensus 652 iLe~LAEIGLIfLLFlaGLELDl~~LKr~~K~iLvLAilgVLLp~~lVG~al~~lLGls~---------~~ALLLGaILS 722 (759)
++-.++-+|+.-++...--+.-++.+....+.++.+.+...+..+++.+.+..++.|+++ ...+.++..-|
T Consensus 186 ~vm~laPigvf~~~a~~v~~~G~~~L~~l~~~v~~~~~~~~l~~~vvl~~~~~~~~g~s~~~~~r~~~~~~~~Af~T~SS 265 (415)
T COG1301 186 FVMRLAPIGVFGLMAFTVAKYGFGSLLSLGKLVLAVYLGLLLFVFVVLGLLLKLLSGFSPFKFLRYISEALLLAFSTSSS 265 (415)
T ss_pred HHHHHhhHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcchh
Confidence 344455566666666555566667787777766555444444444444444433446652 22233333334
Q ss_pred hccHHHHHHHHHH-cCCC
Q 004361 723 LSSTAVVLQVLQE-RGES 739 (759)
Q Consensus 723 aTSpaVVv~VLkE-LGLL 739 (759)
.+..|++++.+++ +|..
T Consensus 266 ~atLPv~m~~~e~~~Gv~ 283 (415)
T COG1301 266 EATLPVTMEKAEKSLGVP 283 (415)
T ss_pred hhhhHHHHHHHHHhcCCC
Confidence 4445666666666 6643
No 235
>PF04018 DUF368: Domain of unknown function (DUF368); InterPro: IPR007163 This is a predicted transmembrane family of unknown function. Proteins usually have between 6 and 9 predicted transmembrane segments.
Probab=39.88 E-value=2e+02 Score=31.20 Aligned_cols=31 Identities=16% Similarity=0.215 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhcc
Q 004361 608 WLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGP 641 (759)
Q Consensus 608 LILlaA~LLg~LlrRL~gLP~VVGyILAGIILGP 641 (759)
-+++++.++.+++... |..+-....|+++|.
T Consensus 67 gi~~~s~~i~~ll~~y---p~~t~~fF~GLIlgS 97 (257)
T PF04018_consen 67 GILLFSKVISYLLENY---PIPTYSFFFGLILGS 97 (257)
T ss_pred HHHHHHHHHHHHHHhC---HHHHHHHHHHHHHHH
Confidence 3556677778888877 777888999999994
No 236
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=39.82 E-value=4.2e+02 Score=26.86 Aligned_cols=82 Identities=22% Similarity=0.300 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCcccccCCCCcchhhHHHHHhhhHHHHHHHHHhhHHHHHHhhhh
Q 004361 218 EAVHKATMALSLAEARLQVAIESLQDVKQEDDYPEGSTEDDAKSDGKEEDGLLLAAENDIKECQANLANCETELRRLQSK 297 (759)
Q Consensus 218 eav~~atmalslaearlq~a~e~~~~~~~~~~~~~~s~~~~~~~d~~~~~~~~~~a~~di~~~q~~l~~ce~el~~~q~~ 297 (759)
++|+.+...-..+...+|.|...++-.+...+....+..+ ..+-+..++.+|.+.+.....++.++.++..
T Consensus 121 ~svk~~l~~R~~~~~~~~~a~~~l~kkk~~~~kl~~~~~~--------~~~k~~~~~~ei~~~~~~~~~~~~~~~~is~- 191 (236)
T PF09325_consen 121 ESVKEALNRRDKKLIEYQNAEKELQKKKAQLEKLKASGKN--------RQDKVEQAENEIEEAERRVEQAKDEFEEISE- 191 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchh--------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3444333333344455566666666655555555554321 1356667788888888888888888877753
Q ss_pred HHHHHHHHHHHHH
Q 004361 298 KEELQKEVDRLNE 310 (759)
Q Consensus 298 k~elqkev~~l~e 310 (759)
.+.+|+.|.+.
T Consensus 192 --~~k~E~~rf~~ 202 (236)
T PF09325_consen 192 --NIKKELERFEK 202 (236)
T ss_pred --HHHHHHHHHHH
Confidence 36677777654
No 237
>PRK15127 multidrug efflux system protein AcrB; Provisional
Probab=39.79 E-value=2.3e+02 Score=36.12 Aligned_cols=26 Identities=19% Similarity=0.151 Sum_probs=18.1
Q ss_pred ChHHHHHHHHHHhhccHHHHHHHHHH
Q 004361 710 PGPASIVIGNGLALSSTAVVLQVLQE 735 (759)
Q Consensus 710 s~~~ALLLGaILSaTSpaVVv~VLkE 735 (759)
....+++++.+++.+-.|+++.++..
T Consensus 1006 ~ii~GL~~St~ltL~~vP~ly~~~~~ 1031 (1049)
T PRK15127 1006 GVMGGMVTATVLAIFFVPVFFVVVRR 1031 (1049)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777887777753
No 238
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=39.67 E-value=5.3e+02 Score=29.37 Aligned_cols=81 Identities=14% Similarity=0.116 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHHHHHHHhhcCChhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHH--HHHHHhhccHHHH
Q 004361 652 GTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIV--IGNGLALSSTAVV 729 (759)
Q Consensus 652 iLe~LAEIGLIfLLFlaGLELDl~~LKr~~K~iLvLAilgVLLp~~lVG~al~~lLGls~~~ALL--LGaILSaTSpaVV 729 (759)
.-+.++.+.+.+++-.+|...|+..+.+ ....+..+++.+.+.+ ++-+++..++++++...++ .+.+-.+|+.+++
T Consensus 264 g~~~lg~~lly~ffa~IGa~a~i~~l~~-ap~~~l~~~i~l~iH~-~l~l~~~kl~k~~l~~~~vAS~AnIGGpaTA~a~ 341 (378)
T PF05684_consen 264 GASELGTFLLYLFFAVIGASADISELLD-APSLFLFGFIILAIHL-LLMLILGKLFKIDLFELLVASNANIGGPATAPAV 341 (378)
T ss_pred chHHHHHHHHHHHHHHHccccCHHHHHH-hHHHHHHHHHHHHHHH-HHHHHHHHHHCCCHHHHHHHhhcccCCcchHHHH
Confidence 3456677777777778999999999887 4444444554444443 3344555677777544332 2223345555555
Q ss_pred HHHHH
Q 004361 730 LQVLQ 734 (759)
Q Consensus 730 v~VLk 734 (759)
.....
T Consensus 342 A~a~~ 346 (378)
T PF05684_consen 342 AAAKG 346 (378)
T ss_pred HHhcC
Confidence 55444
No 239
>PRK14695 serine/threonine transporter SstT; Provisional
Probab=39.49 E-value=2.6e+02 Score=31.17 Aligned_cols=34 Identities=21% Similarity=0.250 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHHHHHhhcCChhHHhhhhhhHH
Q 004361 652 GTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVF 685 (759)
Q Consensus 652 iLe~LAEIGLIfLLFlaGLELDl~~LKr~~K~iL 685 (759)
++-.++=+|+..++...--+.+++.+...++...
T Consensus 99 ~Vm~~aPiGVfaliA~~v~~~G~~~l~~l~~~v~ 132 (319)
T PRK14695 99 WIINLAPFGILGLVFKTISDKGVGSLANYGILLV 132 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 3445666677766666666678888876666543
No 240
>PRK11637 AmiB activator; Provisional
Probab=39.45 E-value=6.2e+02 Score=28.73 Aligned_cols=29 Identities=17% Similarity=0.310 Sum_probs=15.1
Q ss_pred HHHHHhhHHHHHHhhhhHHHHHHHHHHHH
Q 004361 281 QANLANCETELRRLQSKKEELQKEVDRLN 309 (759)
Q Consensus 281 q~~l~~ce~el~~~q~~k~elqkev~~l~ 309 (759)
+..+++-+.+...|+..+.+.|+++.+|.
T Consensus 197 ~~~~~e~~~~k~~L~~~k~e~~~~l~~L~ 225 (428)
T PRK11637 197 KTLLYEQQAQQQKLEQARNERKKTLTGLE 225 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555555554
No 241
>PF03176 MMPL: MMPL family; InterPro: IPR004869 Proteins of this entry are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport [].; GO: 0016020 membrane
Probab=39.42 E-value=78 Score=33.86 Aligned_cols=29 Identities=28% Similarity=0.332 Sum_probs=18.0
Q ss_pred CCChHHHHHHHHHHhhccHHHHHHHHHHc
Q 004361 708 GLPGPASIVIGNGLALSSTAVVLQVLQER 736 (759)
Q Consensus 708 Gls~~~ALLLGaILSaTSpaVVv~VLkEL 736 (759)
|+....+++++.+++.|-.|.++.++...
T Consensus 277 G~~~~~gi~~~~l~~l~llPall~~~~~~ 305 (333)
T PF03176_consen 277 GLLAAIGILIALLLSLTLLPALLSLLGRW 305 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 33344556666666677777777776655
No 242
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=39.40 E-value=1e+03 Score=31.23 Aligned_cols=90 Identities=10% Similarity=0.048 Sum_probs=41.2
Q ss_pred HHhhhHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCcccccCCCCcchhhHHHHHhh
Q 004361 196 WNNVNVTLDMVHEIVNEECIAKEAVHKATMALSLAEARLQVAIESLQDVKQEDDYPEGSTEDDAKSDGKEEDGLLLAAEN 275 (759)
Q Consensus 196 ~~~v~~~l~~iq~~~~~e~~akeav~~atmalslaearlq~a~e~~~~~~~~~~~~~~s~~~~~~~d~~~~~~~~~~a~~ 275 (759)
..+.+.||+.++++-.....+++--+ .+.-|...++-+.+.++..+... +.. . ..-+..+=|..+..++.
T Consensus 47 ~~~l~~tl~~l~~~~~~~~~~~~~~~----~i~~ap~~~~~~~~~l~~~~~~~--~~~-~---~~~s~~~Leq~l~~~~~ 116 (1109)
T PRK10929 47 VEALQSALNWLEERKGSLERAKQYQQ----VIDNFPKLSAELRQQLNNERDEP--RSV-P---PNMSTDALEQEILQVSS 116 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHhhhccc--ccc-c---ccCCHHHHHHHHHHHHH
Confidence 34556666666665444444333222 33334444444444444322111 111 0 11122334455556666
Q ss_pred hHHHHHHHHHhhHHHHHHhh
Q 004361 276 DIKECQANLANCETELRRLQ 295 (759)
Q Consensus 276 di~~~q~~l~~ce~el~~~q 295 (759)
+..+.|..++.-..+++++.
T Consensus 117 ~L~~~q~~l~~~~~~~~~~~ 136 (1109)
T PRK10929 117 QLLEKSRQAQQEQDRAREIS 136 (1109)
T ss_pred HHHHHHHHHHHHhhhhHHHH
Confidence 66666666666655554433
No 243
>PRK10555 aminoglycoside/multidrug efflux system; Provisional
Probab=39.25 E-value=2.1e+02 Score=36.41 Aligned_cols=30 Identities=10% Similarity=0.050 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHhhccHHHHHHHHHHcCCCC
Q 004361 711 GPASIVIGNGLALSSTAVVLQVLQERGEST 740 (759)
Q Consensus 711 ~~~ALLLGaILSaTSpaVVv~VLkELGLLn 740 (759)
...+++++.+++..-.|+++.++.+....+
T Consensus 1004 ii~GL~~St~ltL~vvP~ly~~~~~~~~~~ 1033 (1037)
T PRK10555 1004 VMGGMISATILAIFFVPLFFVLVRRRFPLK 1033 (1037)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 345566666666777777777777665543
No 244
>PRK10869 recombination and repair protein; Provisional
Probab=38.96 E-value=7.4e+02 Score=29.49 Aligned_cols=22 Identities=23% Similarity=0.223 Sum_probs=15.1
Q ss_pred CCcHHHHHHHHHHHHHHHHHhh
Q 004361 148 PTTDELRELLMNAMKELEVAQL 169 (759)
Q Consensus 148 ~~~~~l~e~l~~a~~ele~a~~ 169 (759)
.+..+-+|.|+--.+|++.|.+
T Consensus 181 ~~~~~~~d~l~fql~Ei~~~~l 202 (553)
T PRK10869 181 QERAARKQLLQYQLKELNEFAP 202 (553)
T ss_pred HHHHHHHHHHHHHHHHHHhCCC
Confidence 3455666777777788877765
No 245
>smart00039 CRF corticotropin-releasing factor.
Probab=38.86 E-value=44 Score=27.01 Aligned_cols=29 Identities=34% Similarity=0.361 Sum_probs=23.2
Q ss_pred CCcHHHHHHH--HHHHHHHHHHhhhhhHHHH
Q 004361 148 PTTDELRELL--MNAMKELEVAQLNSTMFEE 176 (759)
Q Consensus 148 ~~~~~l~e~l--~~a~~ele~a~~ns~~fe~ 176 (759)
+.+|=||+.| .+|+++.+.|+.|+.+++.
T Consensus 9 l~~~vLR~~l~~e~a~~~~~qa~~NR~~L~~ 39 (40)
T smart00039 9 LTFDLLRQRLELEKAERRREQAQANRNFLDD 39 (40)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4578888854 6788899999999998863
No 246
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=38.32 E-value=1.5e+02 Score=37.95 Aligned_cols=28 Identities=21% Similarity=0.312 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc---CCCch
Q 004361 601 ASLFDVLWLLLASVIFVPIFQKI---PGGSP 628 (759)
Q Consensus 601 ~lLlqL~LILlaA~LLg~LlrRL---~gLP~ 628 (759)
.|+..++||.++++++.+++.++ .++|.
T Consensus 937 tFi~SIiwIsi~SyilV~~at~IG~vlGIse 967 (1096)
T TIGR00927 937 TFLGSIMWIAMFSYLMVWWAHQVGETIGISE 967 (1096)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhcCCCh
Confidence 56888999999999988888876 35663
No 247
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=38.30 E-value=96 Score=37.50 Aligned_cols=49 Identities=24% Similarity=0.358 Sum_probs=40.7
Q ss_pred HHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 004361 269 LLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQM 317 (759)
Q Consensus 269 ~~~~a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l~e~ae~aq~ 317 (759)
-.-+-.++|++|...+...+.|-+.|+...+|+++|+.+|....+.+.-
T Consensus 416 ei~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r 464 (652)
T COG2433 416 EITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRR 464 (652)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455678899999999999999999999999999999999776665543
No 248
>PLN03223 Polycystin cation channel protein; Provisional
Probab=38.06 E-value=1.3e+02 Score=39.59 Aligned_cols=82 Identities=21% Similarity=0.224 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCcccccCCCCcchhhHHHHHhhhHHHHHHHHHhhHHHH
Q 004361 212 EECIAKEAVHKATMALSLAEARLQVAIESLQDVKQEDDYPEGSTEDDAKSDGKEEDGLLLAAENDIKECQANLANCETEL 291 (759)
Q Consensus 212 ~e~~akeav~~atmalslaearlq~a~e~~~~~~~~~~~~~~s~~~~~~~d~~~~~~~~~~a~~di~~~q~~l~~ce~el 291 (759)
.++.|+|--|.|.|.+. | .-..|+.-.++++.+-..+|-+.|..++++..+.|..|++=...+
T Consensus 1542 ~~at~~ei~~aa~~~~~------~-----------~g~~p~~~~~~e~~~~l~~e~~~L~~s~erL~~~Q~~l~egQ~k~ 1604 (1634)
T PLN03223 1542 TLATADEIDQAAHMLMD------Q-----------VGQVPDDEDDDEDGDVLEKEVDQLQQSLERLAEVQRELAEGQVKV 1604 (1634)
T ss_pred ccccHHHHHHHHHHHHH------H-----------hCCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 46677888888888653 1 122233323333222334555667777777777777776666666
Q ss_pred HHhhhhHHHHHHHHHHHHH
Q 004361 292 RRLQSKKEELQKEVDRLNE 310 (759)
Q Consensus 292 ~~~q~~k~elqkev~~l~e 310 (759)
-.=|.|.-|+|.++.-|-|
T Consensus 1605 ~~~Q~~la~~q~kl~~l~~ 1623 (1634)
T PLN03223 1605 IEGQKQMAERQSRLSQLEN 1623 (1634)
T ss_pred hhhHHHHHHHHHHHHHHHh
Confidence 6666666666665555544
No 249
>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=37.46 E-value=2.2e+02 Score=32.48 Aligned_cols=91 Identities=15% Similarity=0.082 Sum_probs=50.4
Q ss_pred HHHHHHHHhhcCChhHHhh---hhhhH---HHHHHHHHHHHHHHHHHHHHHHhCCChHHH-HHHHHHHhhccHHHHHHHH
Q 004361 661 VVFLLFNIGLELSVERLSS---MKKYV---FGLGSAQVLVTAVVVGLVAHFVSGLPGPAS-IVIGNGLALSSTAVVLQVL 733 (759)
Q Consensus 661 LIfLLFlaGLELDl~~LKr---~~K~i---LvLAilgVLLp~~lVG~al~~lLGls~~~A-LLLGaILSaTSpaVVv~VL 733 (759)
+.++.|.+|+|+..+.+.. +++.. ..-++.+|++|.+ +. +++...-+.. --+ ++-+.|+++....+|
T Consensus 71 MAvFFl~iGLEvKrEll~G~L~s~~~a~~P~iAA~GGmi~PAl-iy----~~~n~~~p~~~~GW-aIP~ATDiAFAlGvl 144 (390)
T COG3004 71 MAVFFLLIGLEVKRELLEGQLSSWRNAAFPVIAAIGGMIAPAL-IY----LALNAGDPATLEGW-AIPMATDIAFALGVL 144 (390)
T ss_pred HHHHHHHHHHHHHHHHHcccccCchhhhhHHHHHhccchhhhh-Hh----heeecCChhhhcCc-CcccHHHHHHHHHHH
Confidence 4567778999998777643 33332 2345666777643 21 2221111100 000 122446666666666
Q ss_pred HHcCC-CCChhHHHHHHHHHHHHhh
Q 004361 734 QERGE-STSRHGRATFSVLLFQVTL 757 (759)
Q Consensus 734 kELGL-LnSe~GRlaLSalVLqDIl 757 (759)
.=+|- ..+..--..++-+++||+-
T Consensus 145 aLLG~rVP~sLKiFLlaLAI~DDlg 169 (390)
T COG3004 145 ALLGSRVPLSLKIFLLALAIIDDLG 169 (390)
T ss_pred HHhcCCCChHHHHHHHHHHHHhhcc
Confidence 66553 4566667788888888874
No 250
>PRK15396 murein lipoprotein; Provisional
Probab=37.38 E-value=1.1e+02 Score=27.92 Aligned_cols=42 Identities=24% Similarity=0.397 Sum_probs=23.5
Q ss_pred HHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 004361 282 ANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVAN 328 (759)
Q Consensus 282 ~~l~~ce~el~~~q~~k~elqkev~~l~e~ae~aq~~a~kaeedvan 328 (759)
..|+-|-.. .+.++|+.+|+.|+.+..+++-++..+..|+.+
T Consensus 16 ~LLaGCAs~-----~kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~ 57 (78)
T PRK15396 16 TLLAGCSSN-----AKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQA 57 (78)
T ss_pred HHHHHcCCc-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666553 355666666666666665555555444444433
No 251
>TIGR00915 2A0602 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=37.24 E-value=2.1e+02 Score=36.34 Aligned_cols=25 Identities=16% Similarity=0.126 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHc
Q 004361 712 PASIVIGNGLALSSTAVVLQVLQER 736 (759)
Q Consensus 712 ~~ALLLGaILSaTSpaVVv~VLkEL 736 (759)
...++++.+++..-.|+++.++.+.
T Consensus 1006 igGL~~st~ltL~vvP~ly~~~~~~ 1030 (1044)
T TIGR00915 1006 FGGMVTATVLAIFFVPLFYVVVRRL 1030 (1044)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555566666667777776654
No 252
>COG1033 Predicted exporters of the RND superfamily [General function prediction only]
Probab=37.16 E-value=4.8e+02 Score=32.45 Aligned_cols=33 Identities=30% Similarity=0.366 Sum_probs=15.2
Q ss_pred HHHHHHHHhCCC----hHHHHHHHHHHhhccHHHHHH
Q 004361 699 VGLVAHFVSGLP----GPASIVIGNGLALSSTAVVLQ 731 (759)
Q Consensus 699 VG~al~~lLGls----~~~ALLLGaILSaTSpaVVv~ 731 (759)
+|++...+.+++ +...+.+|++++.-+.-++.+
T Consensus 308 ~GF~Sl~~s~i~~i~~~Gi~~siGi~la~l~sl~~lp 344 (727)
T COG1033 308 AGFLSLLTSSIPAIKEFGILLSIGIILAFLSSLTVLP 344 (727)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455544443443 233445555555544444433
No 253
>COG4059 MtrE Tetrahydromethanopterin S-methyltransferase, subunit E [Coenzyme metabolism]
Probab=37.07 E-value=4.2e+02 Score=28.86 Aligned_cols=102 Identities=18% Similarity=0.207 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHhhcCChhHHhhhhhhHHHHHHH
Q 004361 611 LASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSA 690 (759)
Q Consensus 611 laA~LLg~LlrRL~gLP~VVGyILAGIILGPsgLGlI~~~eiLe~LAEIGLIfLLFlaGLELDl~~LKr~~K~iLvLAil 690 (759)
+.+.+...+...+ ++|++.. ++.|..+...+.+. ...-+.+|-+.--=.-|--+-++.++....++..-+++
T Consensus 70 vagtVa~vlm~~~-~L~~l~A-l~lGa~iaA~vH~~------~Avts~mGR~~s~s~F~qPvylD~v~sHlgpI~G~gfI 141 (304)
T COG4059 70 VAGTVAYVLMSEF-GLPPLFA-LALGAGIAACVHGT------FAVTSHMGRIASQSRFGQPVYLDMVRSHLGPIAGHGFI 141 (304)
T ss_pred hhHHHHHHHHHHc-CCcHHHH-HHHHHHHHHHHHHH------HHHHHHHHHHhhHhhcCCcchHHHHHHhcccccccchH
Confidence 4445555666778 9998874 45555554432221 11223333333222333444556666655554444433
Q ss_pred HHHHHHHHHHHHHHHHhCCCh---HHHHHHHHHH
Q 004361 691 QVLVTAVVVGLVAHFVSGLPG---PASIVIGNGL 721 (759)
Q Consensus 691 gVLLp~~lVG~al~~lLGls~---~~ALLLGaIL 721 (759)
.. ++++++.++....+|-|+ ..++++|+.+
T Consensus 142 ~t-Fciv~lsYl~~~~l~hPFPLpllA~iwGiTv 174 (304)
T COG4059 142 AT-FCIVVLSYLMTVVLGHPFPLPLLAFIWGITV 174 (304)
T ss_pred HH-HHHHHHHHHHHhhcCCCCchhHHHHHhccee
Confidence 22 233334444444555443 3344444443
No 254
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=37.05 E-value=6.1e+02 Score=27.96 Aligned_cols=46 Identities=26% Similarity=0.384 Sum_probs=30.2
Q ss_pred hHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 004361 268 GLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAE 313 (759)
Q Consensus 268 ~~~~~a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l~e~ae 313 (759)
+.|..++.++.+..+.+.....+|.+++.++.+++.++..+++.-.
T Consensus 209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~ 254 (325)
T PF08317_consen 209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQ 254 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666677777777777766666666666666666666666554433
No 255
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.00 E-value=5.9e+02 Score=27.77 Aligned_cols=74 Identities=31% Similarity=0.332 Sum_probs=44.8
Q ss_pred hhHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHH---HHHHHHhhhHHHHHHHHH---HHHHHHHHH
Q 004361 267 DGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAE---KAQMNALKAEEDVANIML---LAEQAVAFE 340 (759)
Q Consensus 267 ~~~~~~a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l~e~ae---~aq~~a~kaeedvanim~---laeqava~e 340 (759)
++-+.--..||++.|+ +.|.=++++|-.|+|+---+..+.++-+ ||+..+.|--+|=|+|=. .=+.+.-+|
T Consensus 85 ~~~q~~ieqeik~~q~---elEvl~~n~Q~lkeE~dd~keiIs~kr~~~~Ka~e~~~kRkQdsa~~~e~a~wy~dyLGle 161 (246)
T KOG4657|consen 85 EARQMGIEQEIKATQS---ELEVLRRNLQLLKEEKDDSKEIISQKRQALSKAKENAGKRKQDSADIHEAASWYNDYLGLE 161 (246)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHhcCce
Confidence 3444455667888887 5566677788888887755555555554 666666666666665532 224444445
Q ss_pred HHH
Q 004361 341 IEA 343 (759)
Q Consensus 341 ~ea 343 (759)
||+
T Consensus 162 ie~ 164 (246)
T KOG4657|consen 162 IEA 164 (246)
T ss_pred eee
Confidence 544
No 256
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=36.82 E-value=2.5e+02 Score=28.07 Aligned_cols=50 Identities=16% Similarity=0.350 Sum_probs=39.0
Q ss_pred hHHHHHhhhHHHHHHHHHhhHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHH
Q 004361 268 GLLLAAENDIKECQANLANCETELRRLQS---KKEELQKEVDRLNEVAEKAQM 317 (759)
Q Consensus 268 ~~~~~a~~di~~~q~~l~~ce~el~~~q~---~k~elqkev~~l~e~ae~aq~ 317 (759)
..+..+.+++...+..|..-..+|..|+. -.++||+++..|+...+++.-
T Consensus 20 ~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~ 72 (155)
T PF06810_consen 20 AKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKE 72 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHH
Confidence 44445577888888888888888888887 688999999999888776543
No 257
>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit. This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.
Probab=36.76 E-value=1.5e+02 Score=33.69 Aligned_cols=139 Identities=18% Similarity=0.331 Sum_probs=80.6
Q ss_pred hccCCccccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhccccc-ccccchhhHHHHHHHHHHHHHH
Q 004361 588 LDMLPEQEINEEEASLFDVLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGL-SIIRHVHGTKAIAEFGVVFLLF 666 (759)
Q Consensus 588 i~~lp~~~~~~~~~lLlqL~LILlaA~LLg~LlrRL~gLP~VVGyILAGIILGPsgL-GlI~~~eiLe~LAEIGLIfLLF 666 (759)
+.+.+..+....+-.++-+++.++++.++ |.--|++|.+..|.++--.+. ..+.+ ..-+.+.++.-+|+-.
T Consensus 181 I~M~~~r~Vsk~eKi~Fpivv~~i~~ll~-------P~a~pLig~Lm~GnllrEsGv~~rl~~-taqn~l~nivTifLGl 252 (354)
T TIGR01109 181 IRMKQLRTVSKREKILFPIVLLLLVALLI-------PKALPLVGMLMFGNLMRESGVVERLSK-TASNELLNIVTILLGL 252 (354)
T ss_pred cccCCCCCcCccchhHHHHHHHHHHHHHc-------cchHHHHHHHHHHHHHHHhccHHHHHH-HHHHHHHHHHHHHHHH
Confidence 33433334444445566666655555542 334567899999999987753 32221 1224667788888999
Q ss_pred HHhhcCChhHHhhhhh-hHHHHHHHHHHHHHHHHHHHHHHH----hCCChHHHHHHHHHHhhccHHHHHHHHHHcCC
Q 004361 667 NIGLELSVERLSSMKK-YVFGLGSAQVLVTAVVVGLVAHFV----SGLPGPASIVIGNGLALSSTAVVLQVLQERGE 738 (759)
Q Consensus 667 laGLELDl~~LKr~~K-~iLvLAilgVLLp~~lVG~al~~l----LGls~~~ALLLGaILSaTSpaVVv~VLkELGL 738 (759)
.+|..++-+.+.+... .++.+|.+.+.+..+ .|++.+++ .+-.. .-++|+ ...|+.|+..++-+..+.
T Consensus 253 ~vG~~~~A~~fL~~~tl~Il~LG~~Af~~~ta-gGvl~aklmn~fs~~Ki--NPlIGa-AGVSAvPmaARV~qk~~~ 325 (354)
T TIGR01109 253 SVGAKMRADKFLTPQTLGILLLGVVAFAVATA-GGVLMAKLMNLFLKEKI--NPLIGS-AGVSAVPMAARVSNKLGL 325 (354)
T ss_pred HhhhhccHHhhCChHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHccCCC--Cccccc-cccccCcHHHHHHHHHHh
Confidence 9999999998876433 355667666665532 34443332 22211 112333 345677777777776554
No 258
>TIGR00771 DcuC c4-dicarboxylate anaerobic carrier family protein. catalyzing fumarate-succinate exchange and fumarate uptake.
Probab=36.69 E-value=4.1e+02 Score=30.09 Aligned_cols=36 Identities=11% Similarity=0.061 Sum_probs=20.8
Q ss_pred HHHHHHHHhhccHHHHHHHHHHcCCCCChhHHHHHH
Q 004361 714 SIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFS 749 (759)
Q Consensus 714 ALLLGaILSaTSpaVVv~VLkELGLLnSe~GRlaLS 749 (759)
...++..+....||+...++--.++.+-+.+++.=.
T Consensus 343 ~~~i~~~iG~~tpPv~~~l~v~~gia~v~~~~i~k~ 378 (388)
T TIGR00771 343 PMAIAGALGRTASPIAGVVVVCAGLAMVSPFEVVKR 378 (388)
T ss_pred HHHHHHHHhCcCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence 345555555566666666666666655566655433
No 259
>PRK15477 oxaloacetate decarboxylase subunit beta; Provisional
Probab=36.46 E-value=1.7e+02 Score=33.87 Aligned_cols=139 Identities=19% Similarity=0.359 Sum_probs=81.6
Q ss_pred hccCCccccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhccccc-ccccchhhHHHHHHHHHHHHHH
Q 004361 588 LDMLPEQEINEEEASLFDVLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGL-SIIRHVHGTKAIAEFGVVFLLF 666 (759)
Q Consensus 588 i~~lp~~~~~~~~~lLlqL~LILlaA~LLg~LlrRL~gLP~VVGyILAGIILGPsgL-GlI~~~eiLe~LAEIGLIfLLF 666 (759)
+.+....+....+-.++-+++.++++.++ |.--|++|.+..|-++--++. ..+.+ ..-+.+.++.-+|+-.
T Consensus 252 I~M~~lr~VSk~eKIlFPivv~i~~~ll~-------P~a~PLiGmlmfGNllrEsGVv~rLs~-taqn~L~nivTIfLGl 323 (433)
T PRK15477 252 IRMVQLRTVSKREKILFPVVLLLLVALLL-------PDAAPLLGMFCFGNLMRESGVVERLSD-TVQNGLINIVTIFLGL 323 (433)
T ss_pred ccCCCCCCCCccchhHHHHHHHHHHHHHc-------ccHHHHHHHHHHHHHHHHhccHHHHHH-HHHHHHHHHHHHHHHH
Confidence 44433444445555566666666666542 344567899999999987652 33221 1224667788889999
Q ss_pred HHhhcCChhHHhhhhh-hHHHHHHHHHHHHHHHHHHHHHHHh----CCChHHHHHHHHHHhhccHHHHHHHHHHcCC
Q 004361 667 NIGLELSVERLSSMKK-YVFGLGSAQVLVTAVVVGLVAHFVS----GLPGPASIVIGNGLALSSTAVVLQVLQERGE 738 (759)
Q Consensus 667 laGLELDl~~LKr~~K-~iLvLAilgVLLp~~lVG~al~~lL----Gls~~~ALLLGaILSaTSpaVVv~VLkELGL 738 (759)
.+|..++-+.+.+... .++.+|++.+.+..+ .|++.+.++ +-. ..-++|+ ...|+.|+..++-+..+.
T Consensus 324 ~VGa~~~A~~FL~~~tL~Il~LGlvAF~~~Ta-gGvL~aKlmn~fs~~K--iNPlIGa-AGVSAvPmaARV~qkvg~ 396 (433)
T PRK15477 324 SVGAKLVADKFLQPQTLGILLLGVIAFGIGTA-AGVLMAKLLNLCSKNK--INPLIGS-AGVSAVPMAARVSNKVGL 396 (433)
T ss_pred HhhhhccHHhhCChHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHcCCC--cCccccc-cccccCcHHHHHHHHHHh
Confidence 9999999988876433 355666666655432 344433322 211 1122333 345777777777766553
No 260
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=36.43 E-value=6e+02 Score=27.72 Aligned_cols=39 Identities=36% Similarity=0.371 Sum_probs=22.2
Q ss_pred hHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHH
Q 004361 268 GLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVD 306 (759)
Q Consensus 268 ~~~~~a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~ 306 (759)
..++.++.++.+.+..+.+-+.+|.+++....+++.+..
T Consensus 196 ~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~ 234 (423)
T TIGR01843 196 LELLELERERAEAQGELGRLEAELEVLKRQIDELQLERQ 234 (423)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456666666666666666666665555555554443
No 261
>PRK15476 oxaloacetate decarboxylase subunit beta; Provisional
Probab=36.38 E-value=1.7e+02 Score=33.86 Aligned_cols=139 Identities=19% Similarity=0.359 Sum_probs=81.6
Q ss_pred hccCCccccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhccccc-ccccchhhHHHHHHHHHHHHHH
Q 004361 588 LDMLPEQEINEEEASLFDVLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGL-SIIRHVHGTKAIAEFGVVFLLF 666 (759)
Q Consensus 588 i~~lp~~~~~~~~~lLlqL~LILlaA~LLg~LlrRL~gLP~VVGyILAGIILGPsgL-GlI~~~eiLe~LAEIGLIfLLF 666 (759)
+.+....+....+-.++-+++.++++.++ |.--|++|.+..|-++--++. ..+.+ ..-+.+.++.-+|+-.
T Consensus 252 I~M~~lr~VSk~eKIlFPivv~i~~~ll~-------P~a~PLiGmlmfGNllrEsGVv~rLs~-taqn~L~nivTIfLGl 323 (433)
T PRK15476 252 IRMVQLRTVSKREKILFPVVLLLLVALLL-------PDAAPLLGMFCFGNLMRESGVVERLSD-TVQNGLINIVTIFLGL 323 (433)
T ss_pred ccCCCCCCCCccchhHHHHHHHHHHHHHc-------ccHHHHHHHHHHHHHHHHhccHHHHHH-HHHHHHHHHHHHHHHH
Confidence 44433444445555566666666666542 344567899999999987652 33221 1224667788889999
Q ss_pred HHhhcCChhHHhhhhh-hHHHHHHHHHHHHHHHHHHHHHHHh----CCChHHHHHHHHHHhhccHHHHHHHHHHcCC
Q 004361 667 NIGLELSVERLSSMKK-YVFGLGSAQVLVTAVVVGLVAHFVS----GLPGPASIVIGNGLALSSTAVVLQVLQERGE 738 (759)
Q Consensus 667 laGLELDl~~LKr~~K-~iLvLAilgVLLp~~lVG~al~~lL----Gls~~~ALLLGaILSaTSpaVVv~VLkELGL 738 (759)
.+|..++-+.+.+... .++.+|++.+.+..+ .|++.+.++ +-. ..-++|+ ...|+.|+..++-+..+.
T Consensus 324 ~VGa~~~A~~FL~~~tL~Il~LGlvAF~~~Ta-gGvL~aKlmn~fs~~K--iNPlIGa-AGVSAvPmaARV~qkvg~ 396 (433)
T PRK15476 324 SVGAKLVADKFLQPQTLGILLLGVIAFGIGTA-AGVLMAKLLNLCSKNK--INPLIGS-AGVSAVPMAARVSNKVGL 396 (433)
T ss_pred HhhhhccHHhhCChHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHcCCC--cCccccc-cccccCcHHHHHHHHHHh
Confidence 9999999988876433 355666666655432 344433322 211 1112333 345777777777766553
No 262
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=36.30 E-value=4.3e+02 Score=25.98 Aligned_cols=88 Identities=25% Similarity=0.237 Sum_probs=49.9
Q ss_pred HHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHhhhccc-
Q 004361 272 AAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNA-LKAEEDVANIMLLAEQAVAFEIEATQRVND- 349 (759)
Q Consensus 272 ~a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l~e~ae~aq~~a-~kaeedvanim~laeqava~e~ea~q~~nd- 349 (759)
.|++--.+.+..+.+.+..|...+. |-|+-++.-.+.|++..-.+ .+|++++..+..-|++.+..|-+.+..--.
T Consensus 50 ~A~~~~~ea~~~~~e~e~~l~~A~~---ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~i~~ek~~a~~~l~~ 126 (164)
T PRK14471 50 SAEEARKEMQNLQADNERLLKEARA---ERDAILKEAREIKEKMIADAKEEAQVEGDKMIEQAKASIESEKNAAMAEIKN 126 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555666655554333 33334444444444443333 567888888888888888888776543222
Q ss_pred --HHHHHHHHHHhhc
Q 004361 350 --AEIALQRAEKSLS 362 (759)
Q Consensus 350 --aeial~ka~k~~~ 362 (759)
+..|...|+|-|.
T Consensus 127 ~i~~la~~~a~kil~ 141 (164)
T PRK14471 127 QVANLSVEIAEKVLR 141 (164)
T ss_pred HHHHHHHHHHHHHHH
Confidence 3456666666554
No 263
>PRK15475 oxaloacetate decarboxylase subunit beta; Provisional
Probab=36.30 E-value=1.7e+02 Score=33.84 Aligned_cols=139 Identities=19% Similarity=0.364 Sum_probs=81.5
Q ss_pred hccCCccccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhccccc-ccccchhhHHHHHHHHHHHHHH
Q 004361 588 LDMLPEQEINEEEASLFDVLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGL-SIIRHVHGTKAIAEFGVVFLLF 666 (759)
Q Consensus 588 i~~lp~~~~~~~~~lLlqL~LILlaA~LLg~LlrRL~gLP~VVGyILAGIILGPsgL-GlI~~~eiLe~LAEIGLIfLLF 666 (759)
+.+....+....+-.++-+++.++++.++ |.--|++|.+..|-++--++. ..+.+ ..-+.+.++.-+|+-.
T Consensus 252 I~M~~lr~VSk~eKIlFPivv~i~~~ll~-------P~a~PLiGmlmfGNllrEsGVv~rLs~-taqn~L~nivTIfLGl 323 (433)
T PRK15475 252 IRMVQLRTVSKREKILFPVVLLLLVALLL-------PDAAPLLGMFCFGNLMRESGVVERLSD-TVQNGLINIVTIFLGL 323 (433)
T ss_pred ccCCCCCCCCccchhHHHHHHHHHHHHHc-------ccHHHHHHHHHHHHHHHHhccHHHHHH-HHHHHHHHHHHHHHHH
Confidence 44433444445555566666666666542 334567899999999987652 33221 1224667788889999
Q ss_pred HHhhcCChhHHhhhhh-hHHHHHHHHHHHHHHHHHHHHHHH---h-CCChHHHHHHHHHHhhccHHHHHHHHHHcCC
Q 004361 667 NIGLELSVERLSSMKK-YVFGLGSAQVLVTAVVVGLVAHFV---S-GLPGPASIVIGNGLALSSTAVVLQVLQERGE 738 (759)
Q Consensus 667 laGLELDl~~LKr~~K-~iLvLAilgVLLp~~lVG~al~~l---L-Gls~~~ALLLGaILSaTSpaVVv~VLkELGL 738 (759)
.+|..++-+.+.+... .++.+|++.+.+..+ .|++.+.+ + +-. ..-++|+ ...|+.|+..++-+..+.
T Consensus 324 ~VGa~~~A~~FL~~~tl~Il~LGlvAF~~~Ta-gGVL~aKlmn~fs~~K--iNPlIGa-AGVSAvPmaARV~qkvg~ 396 (433)
T PRK15475 324 SVGAKLVADKFLQPQTLGILLLGVIAFGIGTA-AGVLMAKLLNLCSKNK--INPLIGS-AGVSAVPMAARVSNKVGL 396 (433)
T ss_pred HhhhhccHHhhCChHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHcCCC--cCccccc-cccccCcHHHHHHHHHHh
Confidence 9999999998876433 355666666655432 34443332 2 211 1122333 345777777777766553
No 264
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=36.12 E-value=1.6e+02 Score=33.88 Aligned_cols=139 Identities=17% Similarity=0.245 Sum_probs=82.2
Q ss_pred hccC-CccccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHH
Q 004361 588 LDML-PEQEINEEEASLFDVLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLF 666 (759)
Q Consensus 588 i~~l-p~~~~~~~~~lLlqL~LILlaA~LLg~LlrRL~gLP~VVGyILAGIILGPsgLGlI~~~eiLe~LAEIGLIfLLF 666 (759)
+.+. +..+....+-.++-+++.++++.++ |.--|++|.+..|.++--++...+.+ ..-+.+.++.-+|+-.
T Consensus 218 I~M~~~~r~VSk~eKilFpivv~i~~~ll~-------P~a~pLig~Lm~GNllrEsGv~rLs~-taqn~l~nivTifLGl 289 (399)
T TIGR03136 218 LEVEMEFPDVSQRAKFVFTIVAAMLLCLLL-------PVASPLILSFFLGVAIKEAQIEPYQN-LLEKTLTYGSTLFLGL 289 (399)
T ss_pred ccCccCCCCCCccchhHHHHHHHHHHHHHc-------ccHHHHHHHHHHHHHHHHhCcHHHHH-HHHHHHHHHHHHHHHH
Confidence 4443 3334444445566666666665542 33456789999999998876533322 1235677788889999
Q ss_pred HHhhcCChhHHhhhhh-hHHHHHHHHHHHHHHHHHHHHHHH----hCCChHHHHHHHHHHhhccHHHHHHHHHHcCC
Q 004361 667 NIGLELSVERLSSMKK-YVFGLGSAQVLVTAVVVGLVAHFV----SGLPGPASIVIGNGLALSSTAVVLQVLQERGE 738 (759)
Q Consensus 667 laGLELDl~~LKr~~K-~iLvLAilgVLLp~~lVG~al~~l----LGls~~~ALLLGaILSaTSpaVVv~VLkELGL 738 (759)
.+|..++-+.+.+... .++.+|.+.+.+..+ .|++.+.+ .+-. ..-++|+ ...|+.|+..++-+..+.
T Consensus 290 ~vG~t~~A~~FL~~~tl~Il~LGlvAF~~~ta-gGvl~aK~mn~fs~~K--iNPlIGa-AGVSAvPmaARV~qk~g~ 362 (399)
T TIGR03136 290 VLGVLCEASTLLDPRVSILLVLGITALLISGI-GGVLGGWFVYWFSKGK--FNPVIGI-AGVSCLPTTAKIAQKIAT 362 (399)
T ss_pred HhhhhccHHhhCChHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHcCCC--cCccccc-cccccCcHHHHHHHHHHh
Confidence 9999999998876433 355667666665532 34443332 2211 1112333 345677777777766543
No 265
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=35.86 E-value=12 Score=41.29 Aligned_cols=22 Identities=18% Similarity=0.475 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 004361 602 SLFDVLWLLLASVIFVPIFQKI 623 (759)
Q Consensus 602 lLlqL~LILlaA~LLg~LlrRL 623 (759)
.+..+++++++.+++-++|+|-
T Consensus 54 vl~sfAvvliiIIiIImlF~Rr 75 (381)
T PF05297_consen 54 VLYSFAVVLIIIIIIIMLFKRR 75 (381)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555555555666777764
No 266
>PRK10440 iron-enterobactin transporter permease; Provisional
Probab=35.84 E-value=2.8e+02 Score=31.05 Aligned_cols=45 Identities=22% Similarity=0.127 Sum_probs=28.4
Q ss_pred CCchHHHHHHHHHhhccccc-------ccccchhh--HHHHHHHHHHHHHHHHh
Q 004361 625 GGSPVLGYLAAGILIGPYGL-------SIIRHVHG--TKAIAEFGVVFLLFNIG 669 (759)
Q Consensus 625 gLP~VVGyILAGIILGPsgL-------GlI~~~ei--Le~LAEIGLIfLLFlaG 669 (759)
|+|+++..+++|..++-.+. |.+-++.. +.--+.+|+++.++..|
T Consensus 59 RlPRil~a~l~G~~LalsG~llQ~l~rNpLa~P~iLGissGA~lg~~~~~~~~~ 112 (330)
T PRK10440 59 RLPRVLMALLIGAALGVSGAIFQSLMRNPLGSPDVMGFNTGAWSGVLVAMVLFG 112 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcHhhHHHHHHHHHHHHHHHHh
Confidence 67999999999999985542 22223333 45556677666555433
No 267
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=35.69 E-value=3e+02 Score=29.44 Aligned_cols=39 Identities=18% Similarity=0.261 Sum_probs=23.2
Q ss_pred hHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHH
Q 004361 268 GLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVD 306 (759)
Q Consensus 268 ~~~~~a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~ 306 (759)
+..+...+|....++.|.+-..+|+..|.++++|+|..+
T Consensus 151 ~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e 189 (216)
T KOG1962|consen 151 EENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSE 189 (216)
T ss_pred hhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566666666666666666666666665555443
No 268
>PF06177 QueT: QueT transporter; InterPro: IPR010387 This entry is represented by Bacteriophage Dp-1, QueT. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family includes the queT gene encoding a hypothetical integral membrane protein with 5 predicted transmembrane regions. The queT genes in Firmicutes are often preceded by the PreQ1 (7-aminomethyl-7-deazaguanine) riboswitches of two distinct classes [, ], suggesting involvement of the QueT transporters in uptake of a queuosine biosynthetic intermediate.
Probab=35.60 E-value=2.7e+02 Score=27.92 Aligned_cols=41 Identities=27% Similarity=0.336 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCChH---HHHHHHHHHhh
Q 004361 683 YVFGLGSAQVLVTAVVVGLVAHFVSGLPGP---ASIVIGNGLAL 723 (759)
Q Consensus 683 ~iLvLAilgVLLp~~lVG~al~~lLGls~~---~ALLLGaILSa 723 (759)
+.+...+...+...++++.-++++++.|+. ..+.+|=+++.
T Consensus 94 ~~~l~~l~~~l~~a~~V~~~L~~~~~~pf~~~~~~v~~ge~i~~ 137 (152)
T PF06177_consen 94 RYILASLVPVLVNAFIVGAELSYLFGLPFWATYLSVALGEFISM 137 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHH
Confidence 344444555555545667777777777632 33444444444
No 269
>PRK09776 putative diguanylate cyclase; Provisional
Probab=35.36 E-value=9.5e+02 Score=29.72 Aligned_cols=21 Identities=19% Similarity=0.313 Sum_probs=14.4
Q ss_pred HHHHHHHHHhhchhHHHHHHH
Q 004361 514 FQGLMEYARKQLPKLVLGFLL 534 (759)
Q Consensus 514 f~~l~~s~~~q~pklv~g~~l 534 (759)
...|+..-+.+||-+.+|.++
T Consensus 35 ~~~ll~~~~~~~~~~~~~~~~ 55 (1092)
T PRK09776 35 MVAFYRHAGRMWPGILLSCSL 55 (1092)
T ss_pred HHHHHhcchhhhHHHHHHHHH
Confidence 345666677888887776663
No 270
>PF03788 LrgA: LrgA family; InterPro: IPR005538 This family is represented by: YohJ, an inner membrane protein with four predicted transmembrane domains; the C terminus is located in the periplasm []. LrgA, a protein that has been hypothesised to export murein hydrolases []. In Staphylococcus aureus, lrg and cid operons encode homologous proteins that regulate extracellular murein hydrolase activity and penicillin tolerance [, ]. Since the proteins encoded by cidA and lrgA are so similar to the bacteriophage-encoded holin family of proteins, they are considered analogous []. The proteins in this entry are functionally uncharacterised.; GO: 0016021 integral to membrane
Probab=35.17 E-value=3.1e+02 Score=25.46 Aligned_cols=44 Identities=11% Similarity=0.158 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHhhcCChhHHhhhhhhHHHHHHHHHHHHHHH
Q 004361 655 AIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVV 698 (759)
Q Consensus 655 ~LAEIGLIfLLFlaGLELDl~~LKr~~K~iLvLAilgVLLp~~l 698 (759)
.+.++++.|+=-.+|+=-..+.+++.+..++.+-+++.++++.+
T Consensus 47 Ll~~m~lfFvPa~VGi~~~~~~l~~~~~~i~~~i~vsT~l~~~~ 90 (96)
T PF03788_consen 47 LLKNMALFFVPAGVGIMEYFDLLAQEGLPILVVIVVSTLLVLAV 90 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666667776666777776666665555555555433
No 271
>COG3127 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=34.96 E-value=8.1e+02 Score=30.96 Aligned_cols=36 Identities=25% Similarity=0.333 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHh
Q 004361 601 ASLFDVLWLLLASVIFVPIFQKIPGGSPVLGYLAAGIL 638 (759)
Q Consensus 601 ~lLlqL~LILlaA~LLg~LlrRL~gLP~VVGyILAGII 638 (759)
.+++|+.++.+++..+|.++.-+ .|.+.+..+.+++
T Consensus 303 l~l~Qil~v~~lgiaiG~vlG~l--~~~~l~~~L~~~L 338 (829)
T COG3127 303 LYLLQILMVLLLGIAIGLVLGAL--APLVLMALLASLL 338 (829)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhccC
Confidence 66789999988888888777655 3444444444443
No 272
>PRK14011 prefoldin subunit alpha; Provisional
Probab=34.74 E-value=4.8e+02 Score=26.08 Aligned_cols=87 Identities=14% Similarity=0.239 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccCCC---CCCCCc-----ccccCC---C-------CcchhhHHHHHhhhHHH
Q 004361 218 EAVHKATMALSLAEARLQVAIESLQDVKQEDD---YPEGST-----EDDAKS---D-------GKEEDGLLLAAENDIKE 279 (759)
Q Consensus 218 eav~~atmalslaearlq~a~e~~~~~~~~~~---~~~~s~-----~~~~~~---d-------~~~~~~~~~~a~~di~~ 279 (759)
+..+..-..|..|..+++-++++|+......+ |...|. -.|.++ | .+.-++|..-=+.-|++
T Consensus 20 e~L~~si~~L~~a~~e~~~~ie~L~~l~~~~eiLVPLg~s~yV~g~i~d~dkVlVdIGtGy~VEk~~~eA~~~~~~ri~~ 99 (144)
T PRK14011 20 QKLQEELSSIDMMKMELLKSIESMEGLKTSEEILIPLGPGAFLKAKIVDPDKAILGVGSDIYLEKDVSEVIEDFKKSVEE 99 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCCCeEEEEcCCCcEEeEEecCCCeEEEEccCCeEEEecHHHHHHHHHHHHHH
Confidence 44555566788999999999999986432111 111111 111111 1 13345666666666667
Q ss_pred HHHHHHhhHHHHHHhhhhHHHHHHH
Q 004361 280 CQANLANCETELRRLQSKKEELQKE 304 (759)
Q Consensus 280 ~q~~l~~ce~el~~~q~~k~elqke 304 (759)
.+.+..++..-|..++....++|.+
T Consensus 100 l~~~~~~l~~~i~~~~~~~~~l~~~ 124 (144)
T PRK14011 100 LDKTKKEGNKKIEELNKEITKLRKE 124 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777666666666655
No 273
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.57 E-value=79 Score=30.68 Aligned_cols=39 Identities=21% Similarity=0.249 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCch--HHHHHHHHHhhc
Q 004361 602 SLFDVLWLLLASVIFVPIFQKIPGGSP--VLGYLAAGILIG 640 (759)
Q Consensus 602 lLlqL~LILlaA~LLg~LlrRL~gLP~--VVGyILAGIILG 640 (759)
+..+++.=++++..++|++-|+.+..| +|+++|.|+++|
T Consensus 48 lssefIsGilVGa~iG~llD~~agTsPwglIv~lllGf~AG 88 (116)
T COG5336 48 LSSEFISGILVGAGIGWLLDKFAGTSPWGLIVFLLLGFGAG 88 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 345666667788888999998866543 455667777766
No 274
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=34.56 E-value=2.8e+02 Score=30.46 Aligned_cols=17 Identities=29% Similarity=0.337 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004361 221 HKATMALSLAEARLQVA 237 (759)
Q Consensus 221 ~~atmalslaearlq~a 237 (759)
+.+...+.+|+.+++..
T Consensus 116 ~~a~~~l~~a~~~~~r~ 132 (370)
T PRK11578 116 QQAEAELKLARVTLSRQ 132 (370)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444455555555443
No 275
>COG4389 Site-specific recombinase [DNA replication, recombination, and repair]
Probab=34.32 E-value=1.8e+02 Score=34.52 Aligned_cols=32 Identities=19% Similarity=0.335 Sum_probs=21.8
Q ss_pred hhHHHHHhh------hHHHHHHHHHhhHHHHHHhhhhH
Q 004361 267 DGLLLAAEN------DIKECQANLANCETELRRLQSKK 298 (759)
Q Consensus 267 ~~~~~~a~~------di~~~q~~l~~ce~el~~~q~~k 298 (759)
-.++-.|.. |-...|+-+..|..+..++-.+-
T Consensus 221 ~~~lv~A~r~~~~~yd~ahl~vmfdQCR~qid~l~~~g 258 (677)
T COG4389 221 TAKLVEAYRNGTTPYDTAHLEVMFDQCRSQIDYLRRKG 258 (677)
T ss_pred HHHHHccCCCCCCCcchHHHHHHHHHHHHHHHHHHHhc
Confidence 344555554 55677888999998887776553
No 276
>PRK15396 murein lipoprotein; Provisional
Probab=33.96 E-value=1.2e+02 Score=27.67 Aligned_cols=44 Identities=18% Similarity=0.365 Sum_probs=29.4
Q ss_pred hhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 004361 286 NCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVANI 329 (759)
Q Consensus 286 ~ce~el~~~q~~k~elqkev~~l~e~ae~aq~~a~kaeedvani 329 (759)
+...+...|+.+.+.|+.+++-+..-++.|+..|..|-+-.=|+
T Consensus 29 ~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn~ 72 (78)
T PRK15396 29 QLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNQ 72 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34446677777777777777777777777776666666555554
No 277
>PRK01821 hypothetical protein; Provisional
Probab=33.74 E-value=3.8e+02 Score=26.49 Aligned_cols=75 Identities=13% Similarity=0.158 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhhc-CChhHHhhhhhhHHHHHHHH-HHHHHHHHHHHHHHH-h---CCChHHHHHHHHHHhhccHHHHHHH
Q 004361 659 FGVVFLLFNIGLE-LSVERLSSMKKYVFGLGSAQ-VLVTAVVVGLVAHFV-S---GLPGPASIVIGNGLALSSTAVVLQV 732 (759)
Q Consensus 659 IGLIfLLFlaGLE-LDl~~LKr~~K~iLvLAilg-VLLp~~lVG~al~~l-L---Gls~~~ALLLGaILSaTSpaVVv~V 732 (759)
+|+++++...-+. +..+++.+... +.+.-.. +++| +.+|.+.++- + +++...+++++.++....++.+...
T Consensus 41 iGmlLLf~~L~~~~vk~~~v~~~a~--~LL~~m~LfFVP-a~VGim~~~~ll~~~~~~il~~ivvST~lvl~vtg~~~~~ 117 (133)
T PRK01821 41 IGMLILFVLLALQILPAKWVKPGCS--LLIRYMALLFVP-IGVGVMQYYDLLRAQFGPIVVSCIVSTLVVLLVVGWSSHY 117 (133)
T ss_pred HHHHHHHHHHHhCCcCHHHHHHHHH--HHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555444443332 44555554333 2233333 3455 4567665442 1 3445666777777777777777777
Q ss_pred HHHc
Q 004361 733 LQER 736 (759)
Q Consensus 733 LkEL 736 (759)
+..+
T Consensus 118 l~~~ 121 (133)
T PRK01821 118 VHGE 121 (133)
T ss_pred HHhh
Confidence 7543
No 278
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.26 E-value=1.3e+02 Score=35.20 Aligned_cols=33 Identities=21% Similarity=0.346 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHhcCC---CchHHHHHHHHHhhccc
Q 004361 610 LLASVIFVPIFQKIPG---GSPVLGYLAAGILIGPY 642 (759)
Q Consensus 610 LlaA~LLg~LlrRL~g---LP~VVGyILAGIILGPs 642 (759)
.+.+.+++.+.+|+++ +-...|.++.|+.++|.
T Consensus 320 ~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~i 355 (464)
T KOG3764|consen 320 AIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPI 355 (464)
T ss_pred hccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchh
Confidence 4556678888888821 34567788888888875
No 279
>PRK10441 iron-enterobactin transporter membrane protein; Provisional
Probab=33.24 E-value=3.3e+02 Score=30.52 Aligned_cols=43 Identities=26% Similarity=0.170 Sum_probs=28.2
Q ss_pred CCchHHHHHHHHHhhccccc-------ccccchh--hHHHHHHHHHHHHHHH
Q 004361 625 GGSPVLGYLAAGILIGPYGL-------SIIRHVH--GTKAIAEFGVVFLLFN 667 (759)
Q Consensus 625 gLP~VVGyILAGIILGPsgL-------GlI~~~e--iLe~LAEIGLIfLLFl 667 (759)
|+|.++.-+++|..+|-.+. |.+-++. .+..-+.+|.++.++.
T Consensus 60 RLPR~l~ailvG~~LavaG~llQ~l~rNpLA~P~ilGissGA~l~~v~~~~~ 111 (335)
T PRK10441 60 RLPRTLAGLLAGGALGLAGALMQTLTRNPLADPGLLGVNAGASFAIVLGAAL 111 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcchhhHHhHHHHHHHHHHHH
Confidence 77999999999999985432 2222333 3456667777776654
No 280
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=32.89 E-value=2.5e+02 Score=25.84 Aligned_cols=28 Identities=32% Similarity=0.610 Sum_probs=12.6
Q ss_pred HHHhhHHHHHHhhhhHHHHHHHHHHHHH
Q 004361 283 NLANCETELRRLQSKKEELQKEVDRLNE 310 (759)
Q Consensus 283 ~l~~ce~el~~~q~~k~elqkev~~l~e 310 (759)
.+..|+.++.++..+++.+++++..+..
T Consensus 71 ~~e~le~~i~~l~~~~~~l~~~~~elk~ 98 (105)
T cd00632 71 RLETIELRIKRLERQEEDLQEKLKELQE 98 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444433
No 281
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=32.77 E-value=2.1e+02 Score=26.75 Aligned_cols=38 Identities=21% Similarity=0.320 Sum_probs=24.9
Q ss_pred hHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 004361 276 DIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAE 313 (759)
Q Consensus 276 di~~~q~~l~~ce~el~~~q~~k~elqkev~~l~e~ae 313 (759)
-++-++.++..++..+..++....++++++..+.+.++
T Consensus 87 A~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l~ 124 (126)
T TIGR00293 87 AIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQEAQ 124 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455566666677777777777777777776665544
No 282
>COG4666 TRAP-type uncharacterized transport system, fused permease components [General function prediction only]
Probab=32.70 E-value=3.2e+02 Score=33.44 Aligned_cols=20 Identities=20% Similarity=0.330 Sum_probs=17.9
Q ss_pred CCchHHHHHHHHHhhccccc
Q 004361 625 GGSPVLGYLAAGILIGPYGL 644 (759)
Q Consensus 625 gLP~VVGyILAGIILGPsgL 644 (759)
|+|+..-||+...++.|...
T Consensus 471 GlPttanYIi~atl~aP~l~ 490 (642)
T COG4666 471 GLPTTANYIITATLAAPALI 490 (642)
T ss_pred CCCCccHHHHHHHHHHHHHH
Confidence 89999999999999999743
No 283
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=32.34 E-value=1.8e+02 Score=28.30 Aligned_cols=47 Identities=28% Similarity=0.485 Sum_probs=31.9
Q ss_pred HHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 004361 269 LLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKA 315 (759)
Q Consensus 269 ~~~~a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l~e~ae~a 315 (759)
.+..=+..|+.++.-++....++.+++..+++|..|+-+|....+..
T Consensus 17 ~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~ 63 (120)
T PF12325_consen 17 LVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL 63 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556677777777777777777777777777777776665544
No 284
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=32.30 E-value=1e+02 Score=32.97 Aligned_cols=34 Identities=24% Similarity=0.184 Sum_probs=19.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHhhccHHHHHHH
Q 004361 698 VVGLVAHFVSGLPGPASIVIGNGLALSSTAVVLQV 732 (759)
Q Consensus 698 lVG~al~~lLGls~~~ALLLGaILSaTSpaVVv~V 732 (759)
++++++++++| +|...+++|+.+++...-+++.-
T Consensus 40 ~v~v~ig~l~~-~~~~~~i~gi~~g~l~am~vl~r 73 (224)
T PF13829_consen 40 AVFVLIGLLFG-SWWYWLIIGILLGLLAAMIVLSR 73 (224)
T ss_pred HHHHHHHHHHc-cHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666 55666666766666555554443
No 285
>PRK01658 holin-like protein; Validated
Probab=32.27 E-value=4.7e+02 Score=25.38 Aligned_cols=75 Identities=19% Similarity=0.257 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhhc-CChhHHhhhhhhHHHHHHHHH-HHHHHHHHHHHHHH-h---CCChHHHHHHHHHHhhccHHHHHHH
Q 004361 659 FGVVFLLFNIGLE-LSVERLSSMKKYVFGLGSAQV-LVTAVVVGLVAHFV-S---GLPGPASIVIGNGLALSSTAVVLQV 732 (759)
Q Consensus 659 IGLIfLLFlaGLE-LDl~~LKr~~K~iLvLAilgV-LLp~~lVG~al~~l-L---Gls~~~ALLLGaILSaTSpaVVv~V 732 (759)
+|+++++...-.+ +..+++++... +.+.-..+ ++| ..+|.+.++- + +++...+++++.++....++.+.+.
T Consensus 36 iGmlLL~~~L~~~~ik~~~v~~~a~--~Ll~~m~llFVP-a~VGi~~~~~ll~~~~~~il~~ivvsT~l~l~vtg~~~~~ 112 (122)
T PRK01658 36 IGIFLLLLLLSFKILKLKWIELGAE--TLLAELPLFFIP-SAVGVMNYGDFLSSKGISLFLVVVISTFVVMIVTGYLTQL 112 (122)
T ss_pred HHHHHHHHHHHhCCcCHHHHHHHHH--HHHHHHHHHHHH-hhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666555555443 45566655333 22333333 445 4567665432 1 3455667777777777788877777
Q ss_pred HHHc
Q 004361 733 LQER 736 (759)
Q Consensus 733 LkEL 736 (759)
+..+
T Consensus 113 l~~~ 116 (122)
T PRK01658 113 LAKR 116 (122)
T ss_pred HHHh
Confidence 6554
No 286
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=32.21 E-value=1.5e+02 Score=27.45 Aligned_cols=47 Identities=15% Similarity=0.227 Sum_probs=38.9
Q ss_pred HHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 004361 283 NLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVANI 329 (759)
Q Consensus 283 ~l~~ce~el~~~q~~k~elqkev~~l~e~ae~aq~~a~kaeedvani 329 (759)
.+.....+...|+.+.+.++.+|+-++.-+..|+..|..|-+-.=|+
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~RiDN~ 71 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRLDAQ 71 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 34555678889999999999999999999999999888887766665
No 287
>PF03591 AzlC: AzlC protein; InterPro: IPR011606 Some proteins in this entry are encoded by a gene, which is a part of the azl operon. This operon is involved in branched-chain amino acid transport []. Overexpression of this gene results in resistance to a leucine analogue, 4-azaleucine. The protein has 5 potential transmembrane motifs.
Probab=32.08 E-value=4.9e+02 Score=25.40 Aligned_cols=15 Identities=40% Similarity=0.718 Sum_probs=9.0
Q ss_pred chHHHHHHHHHhhcc
Q 004361 627 SPVLGYLAAGILIGP 641 (759)
Q Consensus 627 P~VVGyILAGIILGP 641 (759)
|-++||+..|+..|-
T Consensus 2 Pi~lg~~~~G~~fG~ 16 (143)
T PF03591_consen 2 PIALGYIPFGIAFGV 16 (143)
T ss_pred cchHHHHHHHHHHHH
Confidence 555666666666653
No 288
>PRK10503 multidrug efflux system subunit MdtB; Provisional
Probab=32.01 E-value=3.5e+02 Score=34.51 Aligned_cols=25 Identities=16% Similarity=0.301 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHhhccHHHHHHHHHH
Q 004361 711 GPASIVIGNGLALSSTAVVLQVLQE 735 (759)
Q Consensus 711 ~~~ALLLGaILSaTSpaVVv~VLkE 735 (759)
...+++++.+++..-.|+++.++.+
T Consensus 1000 ii~GL~~St~ltL~vvP~ly~~~~~ 1024 (1040)
T PRK10503 1000 MVGGLIVSQVLTLFTTPVIYLLFDR 1024 (1040)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666777777888877744
No 289
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=31.90 E-value=1e+03 Score=28.98 Aligned_cols=21 Identities=10% Similarity=0.052 Sum_probs=10.5
Q ss_pred hHHHHHhhhHHHHHHHHHhhH
Q 004361 268 GLLLAAENDIKECQANLANCE 288 (759)
Q Consensus 268 ~~~~~a~~di~~~q~~l~~ce 288 (759)
..+..|+.+..+.++.+...+
T Consensus 244 ~ql~~a~~~~~~a~a~~~~l~ 264 (754)
T TIGR01005 244 TELSRARANRAAAEGTADSVK 264 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555544444
No 290
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=31.89 E-value=8.9e+02 Score=28.91 Aligned_cols=22 Identities=27% Similarity=0.259 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHhchhHHHHHH
Q 004361 175 EEKAQRISEAAIALKDEAANAW 196 (759)
Q Consensus 175 e~kaq~ise~ai~l~d~a~~a~ 196 (759)
|.++|.=.+.|=-.+.+++...
T Consensus 205 Ereaeea~k~aq~~K~ea~qkq 226 (489)
T PF05262_consen 205 EREAEEAAKRAQEAKKEAQQKQ 226 (489)
T ss_pred HHHhHHHHHHHHHHHHHHHHHH
Confidence 3344443333333445554433
No 291
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=31.54 E-value=1e+02 Score=25.24 Aligned_cols=35 Identities=29% Similarity=0.393 Sum_probs=24.8
Q ss_pred HHHHHHHhh---HHHHHHhhhhHHHHHHHHHHHHHHHH
Q 004361 279 ECQANLANC---ETELRRLQSKKEELQKEVDRLNEVAE 313 (759)
Q Consensus 279 ~~q~~l~~c---e~el~~~q~~k~elqkev~~l~e~ae 313 (759)
||.+.-++| .++-.+|+..+++|+.||.+|+++..
T Consensus 6 Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 6 DYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 444444444 34778889999999999999887653
No 292
>PF11286 DUF3087: Protein of unknown function (DUF3087); InterPro: IPR021438 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=31.49 E-value=1.2e+02 Score=31.26 Aligned_cols=65 Identities=18% Similarity=0.120 Sum_probs=33.1
Q ss_pred cCChhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCh---HHHHHHHHHHhhccHHHHHHHHHH
Q 004361 671 ELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHFVSGLPG---PASIVIGNGLALSSTAVVLQVLQE 735 (759)
Q Consensus 671 ELDl~~LKr~~K~iLvLAilgVLLp~~lVG~al~~lLGls~---~~ALLLGaILSaTSpaVVv~VLkE 735 (759)
++|...-|+.-+.+.+..++.+++..+++|.++-.+||-+. ...=++|++++.-.++.++.-+++
T Consensus 5 ~idk~~YRk~~n~v~~~~v~~lai~sl~~s~llI~lFg~~~~~nf~~NllGVil~~~~~~~~l~~~k~ 72 (165)
T PF11286_consen 5 EIDKERYRKHLNRVIVACVASLAILSLAFSQLLIALFGGESGGNFHWNLLGVILGLLLTSALLRQLKT 72 (165)
T ss_pred ecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeeeHHHHHHHHHHHHHHHHHHcc
Confidence 57888888766655544344343333444544445566421 111245666665555555444443
No 293
>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit. This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.
Probab=31.28 E-value=3.2e+02 Score=31.22 Aligned_cols=82 Identities=16% Similarity=0.133 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHhhccc---ccccccchhhHHHHHHHH------HHHHHHHHhhcCChhHHhhh
Q 004361 610 LLASVIFVPIFQKIPGGSPVLGYLAAGILIGPY---GLSIIRHVHGTKAIAEFG------VVFLLFNIGLELSVERLSSM 680 (759)
Q Consensus 610 LlaA~LLg~LlrRL~gLP~VVGyILAGIILGPs---gLGlI~~~eiLe~LAEIG------LIfLLFlaGLELDl~~LKr~ 680 (759)
++++.++-++.-+..--|.+.--|-.|+++... ++|.+....++..+-++| -.++.+.+|-=+|+.-+..+
T Consensus 6 i~ig~~LiYLai~k~~EPlLLiPigfG~il~NiP~~~~g~~~~gg~l~~~~~~gi~~~l~P~LIFlGIGAmtDFgpllan 85 (354)
T TIGR01109 6 LLVSLLLLYLAIAKKFEPLLLIPIGFGGILSNIPEAGLGLTAEGGILALFYKVGIGSGIAPLLIFMGIGALTDFGPLLAN 85 (354)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCccccccccCCchHHHHHHHHHhcchHHHHHHHhccHHhhhHHHHhC
Confidence 344444444444431346666667788888743 223333223444333333 33555567778999999888
Q ss_pred hhhHHHHHHHH
Q 004361 681 KKYVFGLGSAQ 691 (759)
Q Consensus 681 ~K~iLvLAilg 691 (759)
.+..+.-+..+
T Consensus 86 P~~~llGaaAQ 96 (354)
T TIGR01109 86 PRTLLLGAAAQ 96 (354)
T ss_pred hHHHHHHHHHH
Confidence 87555333333
No 294
>PF11855 DUF3375: Protein of unknown function (DUF3375); InterPro: IPR021804 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 479 to 499 amino acids in length.
Probab=31.21 E-value=38 Score=39.21 Aligned_cols=53 Identities=25% Similarity=0.343 Sum_probs=47.2
Q ss_pred hhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 004361 286 NCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVANIMLLAEQAVAF 339 (759)
Q Consensus 286 ~ce~el~~~q~~k~elqkev~~l~e~ae~aq~~a~kaeedvanim~laeqava~ 339 (759)
+=+..+..|..+|.++|+|+++|..= +...++..++.|-+-+|.-+|++=-+.
T Consensus 141 Dp~~Ri~~Le~e~~~i~~EI~~l~aG-~~~~ld~~~~~er~~~i~~la~~L~~D 193 (478)
T PF11855_consen 141 DPERRIAELEREIAEIDAEIDRLEAG-DVPVLDDTQARERARQILQLARELPAD 193 (478)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34678999999999999999999988 888999999999999999999986553
No 295
>PRK13628 serine/threonine transporter SstT; Provisional
Probab=31.03 E-value=3.7e+02 Score=30.74 Aligned_cols=35 Identities=14% Similarity=0.087 Sum_probs=24.6
Q ss_pred hhHHHHHHHHHHHHHHHHhhcCChhHHhhhhhhHH
Q 004361 651 HGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVF 685 (759)
Q Consensus 651 eiLe~LAEIGLIfLLFlaGLELDl~~LKr~~K~iL 685 (759)
.++-.++=+|+..++...-.+.+++.+....+.++
T Consensus 184 ~~Im~laPiGVfaliA~~v~~~g~~~l~~l~~~v~ 218 (402)
T PRK13628 184 KWVIRFAPIGIFGLVASTLAETGFSALAGYAQLLA 218 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 34555667777777777666788888887776544
No 296
>PF11839 DUF3359: Protein of unknown function (DUF3359); InterPro: IPR021793 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 80 amino acids in length.
Probab=30.89 E-value=2.6e+02 Score=26.56 Aligned_cols=56 Identities=29% Similarity=0.264 Sum_probs=27.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHH
Q 004361 294 LQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVANIMLLAEQAVAFEIEATQRVNDAEIALQRAEK 359 (759)
Q Consensus 294 ~q~~k~elqkev~~l~e~ae~aq~~a~kaeedvanim~laeqava~e~ea~q~~ndaeial~ka~k 359 (759)
++...+++|..+...+..|..|+..|..|.. -|++|-+.=+.|-|..++ |-+|++.
T Consensus 33 ~~~~a~~a~~~a~~a~~~A~~A~~~AdeA~~-------kA~~A~aaA~~Aqq~A~e---Anek~~R 88 (96)
T PF11839_consen 33 AQSTAEQAQATAASAQSAAASAQQRADEAAS-------KADAALAAAEAAQQTADE---ANEKADR 88 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-------HHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 4445555555555555555555555555544 444444444444444333 3444443
No 297
>PRK11010 ampG muropeptide transporter; Validated
Probab=30.86 E-value=8.4e+02 Score=27.76 Aligned_cols=14 Identities=7% Similarity=0.477 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHhc
Q 004361 610 LLASVIFVPIFQKI 623 (759)
Q Consensus 610 LlaA~LLg~LlrRL 623 (759)
.++..+.+++..|+
T Consensus 59 ~~~~~l~gpl~Dr~ 72 (491)
T PRK11010 59 YVFKFLWSPLMDRY 72 (491)
T ss_pred HHHHHHHHHHHHcc
Confidence 35566677777776
No 298
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=30.82 E-value=5.5e+02 Score=25.55 Aligned_cols=31 Identities=23% Similarity=0.485 Sum_probs=14.0
Q ss_pred HHHHhhHHHHHHhhhhHHHHHHHHHHHHHHH
Q 004361 282 ANLANCETELRRLQSKKEELQKEVDRLNEVA 312 (759)
Q Consensus 282 ~~l~~ce~el~~~q~~k~elqkev~~l~e~a 312 (759)
....+-..++++++..+..++..+..++++.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~ 188 (191)
T PF04156_consen 158 EEVQELRSQLERLQENLQQLEEKIQELQELL 188 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444443
No 299
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=30.40 E-value=1.3e+03 Score=29.72 Aligned_cols=10 Identities=10% Similarity=0.139 Sum_probs=3.8
Q ss_pred HHHHHHHhhH
Q 004361 279 ECQANLANCE 288 (759)
Q Consensus 279 ~~q~~l~~ce 288 (759)
.+++.+..++
T Consensus 367 ~~~~~~~~l~ 376 (1047)
T PRK10246 367 GWRAQFSQQT 376 (1047)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 300
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=30.23 E-value=1.1e+02 Score=30.42 Aligned_cols=35 Identities=34% Similarity=0.663 Sum_probs=21.9
Q ss_pred HHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHH
Q 004361 277 IKECQANLANCETELRRLQSKKEELQKEVDRLNEV 311 (759)
Q Consensus 277 i~~~q~~l~~ce~el~~~q~~k~elqkev~~l~e~ 311 (759)
|+..++...-|.+|..||+.++...++.+++|.+.
T Consensus 49 Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~y 83 (162)
T PF05565_consen 49 IKNLEADIEAIKAEIKRLQERKKSIENRIDRLKEY 83 (162)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666666666666666666666554
No 301
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=30.12 E-value=1.4e+03 Score=30.06 Aligned_cols=15 Identities=7% Similarity=0.197 Sum_probs=9.5
Q ss_pred hHHHHHHHHHHhhch
Q 004361 512 SIFQGLMEYARKQLP 526 (759)
Q Consensus 512 ~vf~~l~~s~~~q~p 526 (759)
.-|+..+.+.++.+-
T Consensus 573 ~~l~~~~~~~~~el~ 587 (1311)
T TIGR00606 573 KQLEDWLHSKSKEIN 587 (1311)
T ss_pred HHHHHHHHHHHHHHH
Confidence 346777777766554
No 302
>PRK15060 L-dehydroascorbate transporter large permease subunit; Provisional
Probab=30.10 E-value=4.3e+02 Score=30.67 Aligned_cols=118 Identities=14% Similarity=0.108 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHhhcCChhHHhhhhhh
Q 004361 604 FDVLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKY 683 (759)
Q Consensus 604 lqL~LILlaA~LLg~LlrRL~gLP~VVGyILAGIILGPsgLGlI~~~eiLe~LAEIGLIfLLFlaGLELDl~~LKr~~K~ 683 (759)
-.+.+++..+.++++++... ++|..+...+.|+-.+|.. --+.+.++++..|+-+|.-.
T Consensus 276 ~~i~~ii~~a~~f~~~lt~~-gvp~~i~~~i~~~~~~~~~-------------~Ll~i~~~~lvlGmfld~~a------- 334 (425)
T PRK15060 276 SVVMFLVASAQVSAWLITIA-ELPMMVSDLLQPLVDSPRL-------------LFIVIMVAIMVVGMVMDLTP------- 334 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHc-ChHHHHHHHHHHcCCCHHH-------------HHHHHHHHHHHHHHhhhHHH-------
Confidence 44555666777777777777 7777766666665444421 11345567777888777421
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCChH-HH--HHHHHHHhhccHHHHHHHHHHcCCCCChhHHHHHHH
Q 004361 684 VFGLGSAQVLVTAVVVGLVAHFVSGLPGP-AS--IVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSV 750 (759)
Q Consensus 684 iLvLAilgVLLp~~lVG~al~~lLGls~~-~A--LLLGaILSaTSpaVVv~VLkELGLLnSe~GRlaLSa 750 (759)
.+ +-+..++.|.+ .-+|+++. .+ +.+...++.-.||+...+.--.++.+-+..++.-++
T Consensus 335 ~i-li~~Pil~Pi~-------~~~Gidpv~fgii~~~~~~ig~iTPPvG~~lfv~~~ia~~~~~~i~~~~ 396 (425)
T PRK15060 335 TV-LILTPVLMPLV-------KEAGIDPIYFGVMFIINCSIGLITPPVGNVLNVISGVAKLKFDDAVRGV 396 (425)
T ss_pred HH-HHHHHHHHHHH-------HHcCCChHHHHHHHHHHHHHhCCCCCccHHHHHHHHhcCCCHHHHHHHH
Confidence 11 11222333321 12465432 23 333344555677887777776666666666665554
No 303
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=30.00 E-value=96 Score=27.48 Aligned_cols=41 Identities=37% Similarity=0.576 Sum_probs=33.1
Q ss_pred hhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 004361 275 NDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKA 315 (759)
Q Consensus 275 ~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l~e~ae~a 315 (759)
+-|+..++...+.|.++..+..+.+++.++++.|.+.+..+
T Consensus 33 ~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~~~ 73 (74)
T PF12329_consen 33 NTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLKRA 73 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 45777788888888888888888888888888888876543
No 304
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=29.99 E-value=1.5e+02 Score=27.37 Aligned_cols=43 Identities=16% Similarity=0.253 Sum_probs=28.4
Q ss_pred hhhHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHH
Q 004361 266 EDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRL 308 (759)
Q Consensus 266 ~~~~~~~a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l 308 (759)
.+++...=.+.+..++..+..|+.++..++.+..++++++..+
T Consensus 61 ~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 61 KEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555556666677777777777777777777777766654
No 305
>PRK03612 spermidine synthase; Provisional
Probab=29.84 E-value=8e+02 Score=28.89 Aligned_cols=13 Identities=23% Similarity=0.595 Sum_probs=9.1
Q ss_pred HHHHHHHhhcCCh
Q 004361 662 VFLLFNIGLELSV 674 (759)
Q Consensus 662 IfLLFlaGLELDl 674 (759)
++.-|++|+++.+
T Consensus 118 ~~~~~l~G~~~Pl 130 (521)
T PRK03612 118 LLIGLLIGMEIPL 130 (521)
T ss_pred HHHHHHHHHHHHH
Confidence 3445888888766
No 306
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=29.82 E-value=6.2e+02 Score=29.27 Aligned_cols=90 Identities=18% Similarity=0.103 Sum_probs=46.0
Q ss_pred HHHHHHHHhhhhhhhcchHHhhhhcccCCccccchhhhhhccchhhHHHHhcchHhhhhhhccCCccccchhHHHHHHHH
Q 004361 528 LVLGFLLFGAGVAFYANQAERSSLQLQQPDVITTSIEEASSNAKPLIREVKKLPKRIKKLLDMLPEQEINEEEASLFDVL 607 (759)
Q Consensus 528 lv~g~~l~gag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~plV~~c~~~~~~~~~li~~lp~~~~~~~~~lLlqL~ 607 (759)
++++++++.+|-.||..-.+|. ..+..|--.| |.... -|..+--|.++...+.-++.
T Consensus 7 ~~~~~~~l~~~Y~~Yg~~l~~~--~~~~d~~~~T-------------------PA~~~--~DGvDYvP~~~~vlfghhf~ 63 (376)
T PF02554_consen 7 FLISLAILIIAYRFYGKFLEKK--FGKLDDSRPT-------------------PAHTM--NDGVDYVPTNKWVLFGHHFA 63 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHhe--eccCCCCCCC-------------------CeeEC--CCCCCCCCCchHHhhHHHHH
Confidence 4677778888877888887775 4422221111 21111 22222222223445555666
Q ss_pred HHHHHHHHHHHHHHhcCC-CchHHHHHHHHHhhc
Q 004361 608 WLLLASVIFVPIFQKIPG-GSPVLGYLAAGILIG 640 (759)
Q Consensus 608 LILlaA~LLg~LlrRL~g-LP~VVGyILAGIILG 640 (759)
-|-..+-+++++..-..| +|.++-.++++++.|
T Consensus 64 sIAGaGPI~GPi~aa~~GwlPa~lWI~~G~if~G 97 (376)
T PF02554_consen 64 SIAGAGPIVGPILAAQFGWLPALLWIVFGCIFAG 97 (376)
T ss_pred HHhccccchHHHHHHHhcchHHHHHHHHccHHHH
Confidence 666656666655553323 466664444555555
No 307
>PRK03918 chromosome segregation protein; Provisional
Probab=29.48 E-value=1.1e+03 Score=28.79 Aligned_cols=23 Identities=39% Similarity=0.699 Sum_probs=10.2
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHH
Q 004361 290 ELRRLQSKKEELQKEVDRLNEVA 312 (759)
Q Consensus 290 el~~~q~~k~elqkev~~l~e~a 312 (759)
++..++.++.++++++.+|.++.
T Consensus 260 ~i~~l~~el~~l~~~l~~l~~~~ 282 (880)
T PRK03918 260 KIRELEERIEELKKEIEELEEKV 282 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 308
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=29.45 E-value=9.8e+02 Score=29.87 Aligned_cols=35 Identities=17% Similarity=0.285 Sum_probs=16.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004361 209 IVNEECIAKEAVHKATMALSLAEARLQVAIESLQD 243 (759)
Q Consensus 209 ~~~~e~~akeav~~atmalslaearlq~a~e~~~~ 243 (759)
|+..=..-++-+..|...+.-.+.++...++.|+.
T Consensus 493 iA~~~Glp~~ii~~A~~~~~~~~~~~~~li~~l~~ 527 (782)
T PRK00409 493 IAKRLGLPENIIEEAKKLIGEDKEKLNELIASLEE 527 (782)
T ss_pred HHHHhCcCHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 33333344444555555554444444444444444
No 309
>TIGR00833 actII Transport protein. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate.
Probab=29.41 E-value=2.8e+02 Score=34.73 Aligned_cols=24 Identities=13% Similarity=0.135 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHH
Q 004361 712 PASIVIGNGLALSSTAVVLQVLQE 735 (759)
Q Consensus 712 ~~ALLLGaILSaTSpaVVv~VLkE 735 (759)
..+++++.+++.|-.|.++.++..
T Consensus 311 a~gvl~a~l~~ltllPall~l~g~ 334 (910)
T TIGR00833 311 AVGVLVALLNAVTLTPALLTLEGR 334 (910)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344455555566666666666654
No 310
>PF03649 UPF0014: Uncharacterised protein family (UPF0014); InterPro: IPR005226 This family has no known function. It includes potential membrane proteins.
Probab=29.28 E-value=3.8e+02 Score=28.93 Aligned_cols=24 Identities=29% Similarity=0.564 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCC
Q 004361 687 LGSAQVLVTAVVVGLVAHFVSGLP 710 (759)
Q Consensus 687 LAilgVLLp~~lVG~al~~lLGls 710 (759)
++.+=+++-.+++|++++|+|..+
T Consensus 39 ~a~~R~~vQL~~vG~vL~~if~~~ 62 (250)
T PF03649_consen 39 IASLRMVVQLLLVGYVLHYIFKLN 62 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCC
Confidence 444445555556677777777654
No 311
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=29.24 E-value=2.1e+02 Score=31.67 Aligned_cols=17 Identities=18% Similarity=-0.099 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004361 223 ATMALSLAEARLQVAIE 239 (759)
Q Consensus 223 atmalslaearlq~a~e 239 (759)
|...+..|+..+++..+
T Consensus 113 a~a~l~~a~~~~~R~~~ 129 (385)
T PRK09578 113 AEAAHLAALDKRRRYDD 129 (385)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444443
No 312
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=29.23 E-value=8.2e+02 Score=27.11 Aligned_cols=49 Identities=20% Similarity=0.329 Sum_probs=33.1
Q ss_pred hhhHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 004361 266 EDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEK 314 (759)
Q Consensus 266 ~~~~~~~a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l~e~ae~ 314 (759)
.++.+..++.++++++....+|-.+|.++..+-..|.|.+.-+.-+-++
T Consensus 212 ~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~k 260 (269)
T PF05278_consen 212 LEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEK 260 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466667777777777777777777777777777777766655544433
No 313
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=28.73 E-value=6.8e+02 Score=26.00 Aligned_cols=43 Identities=21% Similarity=0.247 Sum_probs=31.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhccc---HHHHHHHHHHhhcC
Q 004361 321 KAEEDVANIMLLAEQAVAFEIEATQRVND---AEIALQRAEKSLSN 363 (759)
Q Consensus 321 kaeedvanim~laeqava~e~ea~q~~nd---aeial~ka~k~~~~ 363 (759)
+|.+++..++.-|++.+..|.+.+.+--. ++.|.+-|+|-+..
T Consensus 137 ~A~~eae~ii~~A~~~Ie~Ek~~a~~~Lk~ei~~lAv~iA~kiL~k 182 (205)
T PRK06231 137 EANRQANLIIFQARQEIEKERRELKEQLQKESVELAMLAAEELIKK 182 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 78888889999999888888877643333 34567777776643
No 314
>PRK10578 hypothetical protein; Provisional
Probab=28.65 E-value=7.2e+02 Score=26.27 Aligned_cols=36 Identities=19% Similarity=0.308 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhc
Q 004361 603 LFDVLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIG 640 (759)
Q Consensus 603 LlqL~LILlaA~LLg~LlrRL~gLP~VVGyILAGIILG 640 (759)
+++++-+++++..-.....|. +... +|-++.|++-+
T Consensus 5 ~ld~~g~~~FAisG~l~a~~~-~~D~-~Gv~vlg~vTa 40 (207)
T PRK10578 5 WLDIVGTAVFAISGVLLAGKL-RMDP-FGVLVLGVVTA 40 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHc-CCCc-hhhHHHHHHHH
Confidence 456666666665555555554 5543 45667776544
No 315
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=28.00 E-value=8.4e+02 Score=29.11 Aligned_cols=19 Identities=21% Similarity=0.230 Sum_probs=9.1
Q ss_pred CcHHHHHHHHHHHHHHHHH
Q 004361 149 TTDELRELLMNAMKELEVA 167 (759)
Q Consensus 149 ~~~~l~e~l~~a~~ele~a 167 (759)
.+|.-|+|.....++-+.+
T Consensus 193 ~~~~rk~m~D~KEreaeea 211 (489)
T PF05262_consen 193 GIDKRKDMVDIKEREAEEA 211 (489)
T ss_pred ChhhhhhhHHHHHHHhHHH
Confidence 3455555555444444443
No 316
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=27.97 E-value=2.3e+02 Score=33.21 Aligned_cols=56 Identities=23% Similarity=0.328 Sum_probs=47.1
Q ss_pred CCcchhhHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 004361 262 DGKEEDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQM 317 (759)
Q Consensus 262 d~~~~~~~~~~a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l~e~ae~aq~ 317 (759)
|-.+|.+.+..=..+|++|...|..+|.-|..-|.....+..|+..|++.+..-..
T Consensus 8 dy~~e~~~~~~Lh~~i~~cd~~L~~le~~L~~Fq~~L~~iS~eI~~LQ~~S~~l~~ 63 (508)
T PF04129_consen 8 DYLKESENFADLHNQIQECDSILESLEEMLSNFQNDLGSISSEIRSLQERSSSLNV 63 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566778888889999999999999999999999998888888888888765543
No 317
>TIGR01113 mtrE N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit E. coenzyme M methyltransferase subunit E in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=27.96 E-value=8.7e+02 Score=26.96 Aligned_cols=102 Identities=16% Similarity=0.144 Sum_probs=51.5
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHhhcCChhHHhhhhhhHHHHHHHHH
Q 004361 613 SVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQV 692 (759)
Q Consensus 613 A~LLg~LlrRL~gLP~VVGyILAGIILGPsgLGlI~~~eiLe~LAEIGLIfLLFlaGLELDl~~LKr~~K~iLvLAilgV 692 (759)
+.+...+...+ ++|+++. |+.|-.+...+.+. ..+-+.+|-+--.=.-|--+-++.++.+...+..-+++.+
T Consensus 66 g~vA~~l~~~~-~~~~ilA-i~~Ga~vaa~v~~~------ya~tay~GR~asq~~F~QPvylDvl~~~~~~i~~haFIa~ 137 (283)
T TIGR01113 66 GAVAYVLMSYF-GLPPLIA-LAVGAVIAALVHLA------YATTAYLGRIASSATFNQPVYLDMLTSHLGPIAGHGFIVT 137 (283)
T ss_pred HHHHHHHHHhc-CCchHHH-HHHHHHHHHHHHHH------HHHHHHHHHHHhHHhcCCcchHHHHHhhchhHHHHHHHHH
Confidence 33333344356 8898884 56677666544332 2233334433322223344455667766665555555443
Q ss_pred HHHHHHHHHHHHHHhCCCh---HHHHHHHHHHhh
Q 004361 693 LVTAVVVGLVAHFVSGLPG---PASIVIGNGLAL 723 (759)
Q Consensus 693 LLp~~lVG~al~~lLGls~---~~ALLLGaILSa 723 (759)
+++..+.++....+|-|+ ..++++|+.+..
T Consensus 138 -fci~~~aYlm~~~L~hPFPlPlla~iwGItvGA 170 (283)
T TIGR01113 138 -FCMVGVAYLMTLPLKHPFPLPLLAMIWGITIGA 170 (283)
T ss_pred -HHHHHHHHHHHHhccCCCchhHHHHHHHHhhcc
Confidence 233344555445556442 455666666544
No 318
>PRK00972 tetrahydromethanopterin S-methyltransferase subunit E; Provisional
Probab=27.81 E-value=8.8e+02 Score=27.01 Aligned_cols=94 Identities=16% Similarity=0.178 Sum_probs=48.5
Q ss_pred HhcCCCchHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHhhcCChhHHhhhhhhHHHHHHHHHHHHHHHHH
Q 004361 621 QKIPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVG 700 (759)
Q Consensus 621 rRL~gLP~VVGyILAGIILGPsgLGlI~~~eiLe~LAEIGLIfLLFlaGLELDl~~LKr~~K~iLvLAilgVLLp~~lVG 700 (759)
-.+ ++|+++ -|+.|-.+...+.+.. .+-+.+|-+--.=.-|--+-++.++.+...+..-+++.+ +++..+.
T Consensus 80 m~~-~~~~vl-Ai~~Ga~vaa~vhg~y------a~taylGR~asq~~F~QPvylDvl~sh~~~i~~haFIa~-Fci~~~~ 150 (292)
T PRK00972 80 MAF-GLNPVL-AIIVGAGVAALVHGVY------ATTAYLGRIASQSKFGQPVYLDVLRSHTGPIMGHAFIAT-FCIVTLS 150 (292)
T ss_pred HHc-CccHHH-HHHHHHHHHHHHHHHH------HHHHHHhHHHHHHhcCCceeHHHHHhhchhHHHHHHHHH-HHHHHHH
Confidence 366 889888 4667776665443322 223333333222223334445667766665555555443 2333445
Q ss_pred HHHHHHhCCCh---HHHHHHHHHHhh
Q 004361 701 LVAHFVSGLPG---PASIVIGNGLAL 723 (759)
Q Consensus 701 ~al~~lLGls~---~~ALLLGaILSa 723 (759)
++....+|-|+ ..++++|+.+..
T Consensus 151 Ylm~~~L~hPFPLPlla~iwGItvGA 176 (292)
T PRK00972 151 YLMTTALGHPFPLPLLALIWGITVGA 176 (292)
T ss_pred HHHHHhccCCCchhHHHHHHHHhhcc
Confidence 55545556442 455666666543
No 319
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=27.60 E-value=7.3e+02 Score=25.94 Aligned_cols=142 Identities=20% Similarity=0.190 Sum_probs=83.2
Q ss_pred HHhhhhhHHHHHHH---HHHHHHHhchhHH-HHHHHhhhHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004361 166 VAQLNSTMFEEKAQ---RISEAAIALKDEA-ANAWNNVNVTLDMVHEIVNEECIAKEAVHKATMALSLAEARLQVAIESL 241 (759)
Q Consensus 166 ~a~~ns~~fe~kaq---~ise~ai~l~d~a-~~a~~~v~~~l~~iq~~~~~e~~akeav~~atmalslaearlq~a~e~~ 241 (759)
.|+.-.+.+-+||- |-+|.|++=|... ..-...|.-+=.+||++-..=..+..+++.|..+..-|+..++.....+
T Consensus 39 Aa~~vk~~lA~kA~qaA~aAeAaL~GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l 118 (188)
T PF05335_consen 39 AAQQVKNQLADKAAQAAKAAEAALAGKQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAAL 118 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555543 3344444433321 2223334444445555555555667777777777777777777777777
Q ss_pred hhhccCCCCCCCCcccccCCCCcchhhHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 004361 242 QDVKQEDDYPEGSTEDDAKSDGKEEDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALK 321 (759)
Q Consensus 242 ~~~~~~~~~~~~s~~~~~~~d~~~~~~~~~~a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l~e~ae~aq~~a~k 321 (759)
+.+++..+ .-+.....||.|+.+=+..|..-..++.+|+....+...+.++..+-|.||--.|.-
T Consensus 119 ~~a~~nl~---------------~a~~~a~~AQ~el~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~~tk~aA~kA~~AA~e 183 (188)
T PF05335_consen 119 KAAQANLA---------------NAEQVAEGAQQELAEKTQLLEAAKRRVEELQRQLQAARADYEKTKKAAYKAACAAQE 183 (188)
T ss_pred HHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77653332 123555667777777777776666677777777777777777777777666655544
Q ss_pred h
Q 004361 322 A 322 (759)
Q Consensus 322 a 322 (759)
|
T Consensus 184 A 184 (188)
T PF05335_consen 184 A 184 (188)
T ss_pred H
Confidence 3
No 320
>PRK11283 gltP glutamate/aspartate:proton symporter; Provisional
Probab=27.41 E-value=5.5e+02 Score=29.72 Aligned_cols=38 Identities=21% Similarity=0.138 Sum_probs=25.8
Q ss_pred hhHHHHHHHHHHHHHHHHhhcCChhHHhhhhhhHHHHH
Q 004361 651 HGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLG 688 (759)
Q Consensus 651 eiLe~LAEIGLIfLLFlaGLELDl~~LKr~~K~iLvLA 688 (759)
.++-.++=+|+..++...-.+.+++.+....+..+.+.
T Consensus 201 ~~im~~aPiGVfaliA~~~~~~g~~~l~~l~~~l~~~~ 238 (437)
T PRK11283 201 HMVMRYAPVGVFALIAVTVANFGFASLWPLAKLVLLVY 238 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 34445666777777777777788888887776554433
No 321
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=27.15 E-value=7.1e+02 Score=31.05 Aligned_cols=50 Identities=24% Similarity=0.332 Sum_probs=29.6
Q ss_pred hhhHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 004361 266 EDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKA 315 (759)
Q Consensus 266 ~~~~~~~a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l~e~ae~a 315 (759)
=++.+..-.++.++.+....+.+.++++++..+.+|+++..+|.+.-++.
T Consensus 518 ~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~ 567 (782)
T PRK00409 518 LNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKL 567 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555556666666666666666666666666666666655444433
No 322
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=26.75 E-value=1.6e+02 Score=28.16 Aligned_cols=45 Identities=16% Similarity=0.251 Sum_probs=35.9
Q ss_pred HHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 004361 272 AAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQ 316 (759)
Q Consensus 272 ~a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l~e~ae~aq 316 (759)
.-.+-++.++.++.+++..+..++....+++++.+.+....+..+
T Consensus 91 ~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~ 135 (140)
T PRK03947 91 DLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQ 135 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556677788888999999999999999998888887776654
No 323
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=26.68 E-value=5.5e+02 Score=28.24 Aligned_cols=41 Identities=24% Similarity=0.341 Sum_probs=27.1
Q ss_pred HhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 004361 273 AENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAE 313 (759)
Q Consensus 273 a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l~e~ae 313 (759)
++.++...++.|.+.+.++++.+.+....+.+.+|.+.+.+
T Consensus 97 ~~~~~~~~~a~l~~~~~~l~~a~~~l~~a~~~~~r~~~L~~ 137 (370)
T PRK11578 97 AENQIKEVEATLMELRAQRQQAEAELKLARVTLSRQQRLAK 137 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555666666677777777777777777777666654
No 324
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=26.68 E-value=3e+02 Score=27.44 Aligned_cols=32 Identities=41% Similarity=0.594 Sum_probs=24.9
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHH--HHHHHHhhh
Q 004361 291 LRRLQSKKEELQKEVDRLNEVAE--KAQMNALKA 322 (759)
Q Consensus 291 l~~~q~~k~elqkev~~l~e~ae--~aq~~a~ka 322 (759)
...|...|+.|+|+++.|....+ .++|+++|+
T Consensus 83 ~~~LEe~ke~l~k~i~~les~~e~I~~~m~~LK~ 116 (131)
T KOG1760|consen 83 QDQLEEKKETLEKEIEELESELESISARMDELKK 116 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566789999999999988776 467888775
No 325
>PRK09343 prefoldin subunit beta; Provisional
Probab=26.57 E-value=5.8e+02 Score=24.45 Aligned_cols=41 Identities=15% Similarity=0.196 Sum_probs=21.8
Q ss_pred hHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHH
Q 004361 268 GLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRL 308 (759)
Q Consensus 268 ~~~~~a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l 308 (759)
++..--.+.+.-|...+..||.+...++.+..++|+++..+
T Consensus 71 e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~l 111 (121)
T PRK09343 71 KVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEM 111 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444445555555555555555555555555555443
No 326
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=26.43 E-value=4.7e+02 Score=23.39 Aligned_cols=63 Identities=24% Similarity=0.267 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhhhhccCCCCCCCCcccccCCCCcchhhHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHH
Q 004361 231 EARLQVAIESLQDVKQEDDYPEGSTEDDAKSDGKEEDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNE 310 (759)
Q Consensus 231 earlq~a~e~~~~~~~~~~~~~~s~~~~~~~d~~~~~~~~~~a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l~e 310 (759)
|.+|.-|.|+|+.. - +.-+..=+....+-|-.+.....+...|..+...|...|++|++
T Consensus 5 E~qLl~ale~Lq~~------------------y---~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ 63 (70)
T PF04899_consen 5 EKQLLSALEELQQS------------------Y---EKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSE 63 (70)
T ss_pred HHHHHHHHHHHHHH------------------H---HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888872 1 12223335566777778888888999999999999999999998
Q ss_pred HHHH
Q 004361 311 VAEK 314 (759)
Q Consensus 311 ~ae~ 314 (759)
.-++
T Consensus 64 ql~r 67 (70)
T PF04899_consen 64 QLER 67 (70)
T ss_pred HHHh
Confidence 7654
No 327
>PRK09777 fecD iron-dicitrate transporter subunit FecD; Reviewed
Probab=26.18 E-value=5.5e+02 Score=28.62 Aligned_cols=43 Identities=16% Similarity=0.044 Sum_probs=27.5
Q ss_pred CCchHHHHHHHHHhhccccc-------ccccchhh--HHHHHHHHHHHHHHH
Q 004361 625 GGSPVLGYLAAGILIGPYGL-------SIIRHVHG--TKAIAEFGVVFLLFN 667 (759)
Q Consensus 625 gLP~VVGyILAGIILGPsgL-------GlI~~~ei--Le~LAEIGLIfLLFl 667 (759)
|+|+++.-+++|..+|-.+. |.+-++.. +..-+.+|.++.++.
T Consensus 51 RlPR~l~a~l~G~~LavsG~~lQ~l~rNpLA~P~iLGissGA~l~~~l~~~~ 102 (318)
T PRK09777 51 RLPRLLLALFVGAALAVSGVLVQGIVRNPLASPDILGVNHAASLASVGALLL 102 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcHhhHHHHHHHHHHHHHHH
Confidence 67999999999999885542 22223333 455666776665554
No 328
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=26.14 E-value=1.3e+03 Score=28.23 Aligned_cols=37 Identities=16% Similarity=0.268 Sum_probs=26.7
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 004361 146 EPPTTDELRELLMNAMKELEVAQLNSTMFEEKAQRIS 182 (759)
Q Consensus 146 ~~~~~~~l~e~l~~a~~ele~a~~ns~~fe~kaq~is 182 (759)
...++++|++-|+..+.+++..+-.-.++..+.+++-
T Consensus 326 ~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~ 362 (594)
T PF05667_consen 326 QEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLE 362 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456888888888888888877777777766655543
No 329
>TIGR03480 HpnN hopanoid biosynthesis associated RND transporter like protein HpnN. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins appear to be related to the RND family of export proteins, particularly the hydrophobe/amphiphile efflux-3 (HAE3) family represented by TIGR00921.
Probab=26.12 E-value=5.4e+02 Score=31.93 Aligned_cols=14 Identities=14% Similarity=0.176 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHhc
Q 004361 610 LLASVIFVPIFQKI 623 (759)
Q Consensus 610 LlaA~LLg~LlrRL 623 (759)
+++..++...++++
T Consensus 280 ~lv~llL~l~frs~ 293 (862)
T TIGR03480 280 VLVLVLLWLALRSP 293 (862)
T ss_pred HHHHHHHHHHHhhH
Confidence 33344445556655
No 330
>TIGR00914 2A0601 heavy metal efflux pump (cobalt-zinc-cadmium). This model represents a family of H+/heavy metal cation antiporters. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=26.06 E-value=2.4e+02 Score=35.80 Aligned_cols=26 Identities=15% Similarity=0.226 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHcC
Q 004361 712 PASIVIGNGLALSSTAVVLQVLQERG 737 (759)
Q Consensus 712 ~~ALLLGaILSaTSpaVVv~VLkELG 737 (759)
...++++.+++..-.|+++.++...+
T Consensus 1014 ~~gl~~s~~~tL~~vP~l~~~~~~~~ 1039 (1051)
T TIGR00914 1014 IGGIITATLLTLFVLPALYRLVHRRR 1039 (1051)
T ss_pred EchHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45566677777777777777766543
No 331
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=26.03 E-value=1.2e+03 Score=28.16 Aligned_cols=34 Identities=24% Similarity=0.367 Sum_probs=17.0
Q ss_pred HHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 004361 282 ANLANCETELRRLQSKKEELQKEVDRLNEVAEKA 315 (759)
Q Consensus 282 ~~l~~ce~el~~~q~~k~elqkev~~l~e~ae~a 315 (759)
..|.+|..++...+.....+|.|.+.|.+-...+
T Consensus 262 ~rLk~~~~~~~~~~~~~~~~~~e~e~LkeqLr~~ 295 (546)
T PF07888_consen 262 QRLKETVVQLKQEETQAQQLQQENEALKEQLRSA 295 (546)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Confidence 3455555555544444445555555555444433
No 332
>PF04206 MtrE: Tetrahydromethanopterin S-methyltransferase, subunit E ; InterPro: IPR005780 This model describes N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit E in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. 5-methyl-5,6,7,8-tetrahydromethanopterin + 2-mercaptoethanesulphonate = 5,6,7,8-tetrahydromethanopterin + 2-(methylthio)ethanesulphonate. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase (encoded by subunit A) is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0006814 sodium ion transport, 0005737 cytoplasm, 0012506 vesicle membrane
Probab=26.02 E-value=9.2e+02 Score=26.61 Aligned_cols=101 Identities=15% Similarity=0.201 Sum_probs=48.4
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHhhcCChhHHhhhhhhHHHHHHHHHH
Q 004361 614 VIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVL 693 (759)
Q Consensus 614 ~LLg~LlrRL~gLP~VVGyILAGIILGPsgLGlI~~~eiLe~LAEIGLIfLLFlaGLELDl~~LKr~~K~iLvLAilgVL 693 (759)
.+...+...+ ++|++++ |+.|-.+...+.+. ..+-+.+|-+--.=.-+--+-++.++.+...+..-+++.+
T Consensus 67 ~iA~~lm~~~-~~~~i~a-i~~Ga~vAa~v~g~------ya~taylGR~~s~~~F~QPvylDvl~~~~~~i~~haFIa~- 137 (269)
T PF04206_consen 67 AIAWALMSAF-GLNPILA-IAIGAAVAALVHGV------YATTAYLGRIASQKRFGQPVYLDVLRSHTPPIMAHAFIAT- 137 (269)
T ss_pred HHHHHHHHHc-CccHHHH-HHHHHHHHHHHHHH------HHHHHHhhhHhhHhhcCCCeehHHHhhhchhHHHHHHHHH-
Confidence 3333444466 8888874 56666665543332 1223333333222222333444556665555555554433
Q ss_pred HHHHHHHHHHHHHhCCCh---HHHHHHHHHHhh
Q 004361 694 VTAVVVGLVAHFVSGLPG---PASIVIGNGLAL 723 (759)
Q Consensus 694 Lp~~lVG~al~~lLGls~---~~ALLLGaILSa 723 (759)
+++..+.++..+.++-|+ ..++++|+.+..
T Consensus 138 F~i~~~sYlm~~~L~hPFPlPlla~iwGitvGA 170 (269)
T PF04206_consen 138 FCIVTISYLMTLALGHPFPLPLLALIWGITVGA 170 (269)
T ss_pred HHHHHHHHHHHHhccCCCchhHHHHHHHHhhcc
Confidence 233334455444555442 455666666543
No 333
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=25.93 E-value=6.4e+02 Score=31.20 Aligned_cols=28 Identities=14% Similarity=0.103 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHhcCCCchH-HHHHHHHH
Q 004361 610 LLASVIFVPIFQKIPGGSPV-LGYLAAGI 637 (759)
Q Consensus 610 LlaA~LLg~LlrRL~gLP~V-VGyILAGI 637 (759)
++...+.+++..|+.+-+.+ ++.++.++
T Consensus 609 i~G~il~g~L~Dr~GRr~~l~~~~~lsai 637 (742)
T TIGR01299 609 LPGNIVSALLMDKIGRLRMLAGSMVLSCI 637 (742)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44556667778888333333 33444443
No 334
>PF03649 UPF0014: Uncharacterised protein family (UPF0014); InterPro: IPR005226 This family has no known function. It includes potential membrane proteins.
Probab=25.84 E-value=6.2e+02 Score=27.31 Aligned_cols=11 Identities=18% Similarity=0.250 Sum_probs=6.6
Q ss_pred HHHHHHhhccc
Q 004361 632 YLAAGILIGPY 642 (759)
Q Consensus 632 yILAGIILGPs 642 (759)
.++.|.+|.+.
T Consensus 48 L~~vG~vL~~i 58 (250)
T PF03649_consen 48 LLLVGYVLHYI 58 (250)
T ss_pred HHHHHHHHHHH
Confidence 44567776654
No 335
>TIGR00843 benE benzoate transporter. The benzoate transporter family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter.
Probab=25.80 E-value=6.8e+02 Score=28.94 Aligned_cols=44 Identities=25% Similarity=0.409 Sum_probs=24.8
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHhcCCCchHHHHHHHHHhhcccccccc
Q 004361 601 ASLFDVLWLLL--ASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSII 647 (759)
Q Consensus 601 ~lLlqL~LILl--aA~LLg~LlrRL~gLP~VVGyILAGIILGPsgLGlI 647 (759)
.+++.-+++++ ++..+..+.+++| |++.+-+++|+++.- +++.+
T Consensus 109 Afiv~g~lilllGltG~f~rl~~~IP--~~Va~amLAGIlL~f-~l~~~ 154 (395)
T TIGR00843 109 AFITAAALIFLCGITGLFAKLLKIIP--HGIAAAMLAGILFQF-GLGAF 154 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHH-HHHHH
Confidence 34444333333 4555666666662 356667888887764 55443
No 336
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=25.69 E-value=2.5e+02 Score=31.39 Aligned_cols=13 Identities=15% Similarity=0.135 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHH
Q 004361 225 MALSLAEARLQVA 237 (759)
Q Consensus 225 malslaearlq~a 237 (759)
..+.+|+..+++.
T Consensus 117 a~l~~a~~~~~R~ 129 (397)
T PRK15030 117 AAANIAQLTVNRY 129 (397)
T ss_pred HHHHHHHHHHHHH
Confidence 3344455544444
No 337
>KOG2189 consensus Vacuolar H+-ATPase V0 sector, subunit a [Energy production and conversion]
Probab=25.49 E-value=1.1e+02 Score=37.95 Aligned_cols=39 Identities=31% Similarity=0.480 Sum_probs=35.5
Q ss_pred hhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHH
Q 004361 274 ENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVA 312 (759)
Q Consensus 274 ~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l~e~a 312 (759)
..||-+.+++|.+||.||+++...+++|++.-..|.|..
T Consensus 91 ~~~i~dle~~l~klE~el~eln~n~~~L~~n~~eL~E~~ 129 (829)
T KOG2189|consen 91 PREIIDLEEQLEKLESELRELNANKEALKANYNELLELK 129 (829)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 357889999999999999999999999999999888875
No 338
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=25.48 E-value=8.1e+02 Score=29.14 Aligned_cols=67 Identities=28% Similarity=0.306 Sum_probs=37.1
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhhhhhHHHH---HHHHHHHHHHhchhHHHHHHHhhhHhHHHHHHHHhHHHHHHHHHHHH
Q 004361 147 PPTTDELRELLMNAMKELEVAQLNSTMFEE---KAQRISEAAIALKDEAANAWNNVNVTLDMVHEIVNEECIAKEAVHKA 223 (759)
Q Consensus 147 ~~~~~~l~e~l~~a~~ele~a~~ns~~fe~---kaq~ise~ai~l~d~a~~a~~~v~~~l~~iq~~~~~e~~akeav~~a 223 (759)
..++++|.+.|+||+.|.+---.-.--+|. +|++.+|. .+=+.-|..-||-.| -
T Consensus 258 Eqsl~dlQk~Lekar~e~rnvavek~~lerkl~ea~rl~el----------------------reg~e~e~~rkelE~-l 314 (575)
T KOG4403|consen 258 EQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEAPRLSEL----------------------REGVENETSRKELEQ-L 314 (575)
T ss_pred HHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhhhhhhhh----------------------hcchhHHHHHHHHHH-H
Confidence 356888888888888884322222112222 34555443 222222333355555 7
Q ss_pred HHHHHHHHHHHHH
Q 004361 224 TMALSLAEARLQV 236 (759)
Q Consensus 224 tmalslaearlq~ 236 (759)
+|+|+-||-+|..
T Consensus 315 R~~L~kAEkele~ 327 (575)
T KOG4403|consen 315 RVALEKAEKELEA 327 (575)
T ss_pred HHHHHHHHHHHHh
Confidence 7889888888753
No 339
>COG3333 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.44 E-value=91 Score=36.68 Aligned_cols=37 Identities=27% Similarity=0.471 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhcccc
Q 004361 603 LFDVLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYG 643 (759)
Q Consensus 603 LlqL~LILlaA~LLg~LlrRL~gLP~VVGyILAGIILGPsg 643 (759)
.+|+.+.++++. ++++++|+ +.|... ++.|++|||..
T Consensus 411 ~fDv~~~~~fG~-lgY~~~kl-~~p~aP--llLg~VLGpl~ 447 (504)
T COG3333 411 VFDVYLMLGFGL-LGYLLRKL-GFPLAP--LLLGFVLGPLA 447 (504)
T ss_pred HHHHHHHHHHHH-HHHHHHHc-CCCchH--HHHHHHhhHHH
Confidence 577777777765 58899999 999876 89999999964
No 340
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=25.39 E-value=1.3e+02 Score=28.29 Aligned_cols=35 Identities=20% Similarity=0.333 Sum_probs=22.3
Q ss_pred hHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHH
Q 004361 276 DIKECQANLANCETELRRLQSKKEELQKEVDRLNE 310 (759)
Q Consensus 276 di~~~q~~l~~ce~el~~~q~~k~elqkev~~l~e 310 (759)
...+-+..++.-+.|+.+++.+-..|+.||.+|+.
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34455566666666666667777777777766653
No 341
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=25.14 E-value=1.5e+03 Score=28.67 Aligned_cols=123 Identities=23% Similarity=0.268 Sum_probs=79.6
Q ss_pred cHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhchhHHHHHHHhhhHhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 004361 150 TDELRELLMNAMKELEVAQLNSTMFEEKAQRISEAAIALKDEAANAWNNVNVTLDMVHEIVNEECIAKEAVHKATMALSL 229 (759)
Q Consensus 150 ~~~l~e~l~~a~~ele~a~~ns~~fe~kaq~ise~ai~l~d~a~~a~~~v~~~l~~iq~~~~~e~~akeav~~atmalsl 229 (759)
+..|-.+|.-.|++|-.+| ||.=|+|-+++..---+-.+.+.....-|.-... ++.. -+..++.+.-+|
T Consensus 47 ~~hld~aLkec~~qlr~~r------ee~eq~i~~~~~~~s~e~e~~~~~le~~l~e~~~----~l~~-~~~e~~~l~~~l 115 (769)
T PF05911_consen 47 VSHLDGALKECMRQLRQVR------EEQEQKIHEAVAKKSKEWEKIKSELEAKLAELSK----RLAE-SAAENSALSKAL 115 (769)
T ss_pred hhhhhHHHHHHHHHHHHhh------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH----HHHH-HHhhhHHHHHHH
Confidence 4456677888888887766 8899999998887777777777666655544332 2211 112222222222
Q ss_pred HHHHHHHHHHHhhhhccCCCCCCCCcccccCCCCcchhhHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHH
Q 004361 230 AEARLQVAIESLQDVKQEDDYPEGSTEDDAKSDGKEEDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLN 309 (759)
Q Consensus 230 aearlq~a~e~~~~~~~~~~~~~~s~~~~~~~d~~~~~~~~~~a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l~ 309 (759)
.+|-.+..+ =.+....|..||.+.++.|..||.|-..|+-..--|+||+.-.+
T Consensus 116 -~~~~~~i~~--------------------------l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~ 168 (769)
T PF05911_consen 116 -QEKEKLIAE--------------------------LSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRN 168 (769)
T ss_pred -HHHHHHHHH--------------------------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111 12444567778999999999999999999999888999988777
Q ss_pred H
Q 004361 310 E 310 (759)
Q Consensus 310 e 310 (759)
+
T Consensus 169 ~ 169 (769)
T PF05911_consen 169 E 169 (769)
T ss_pred H
Confidence 5
No 342
>PRK09577 multidrug efflux protein; Reviewed
Probab=25.13 E-value=5.5e+02 Score=32.79 Aligned_cols=28 Identities=11% Similarity=0.056 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHhhccHHHHHHHHHHcCC
Q 004361 711 GPASIVIGNGLALSSTAVVLQVLQERGE 738 (759)
Q Consensus 711 ~~~ALLLGaILSaTSpaVVv~VLkELGL 738 (759)
....++++.+++.--.|+++.++.+.+.
T Consensus 1000 iigGL~~sT~lTL~vvP~ly~l~~~~~~ 1027 (1032)
T PRK09577 1000 VLGGVITATVLAVFLVPLFFVVVGRLFD 1027 (1032)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhccC
Confidence 3445555666666666777777766553
No 343
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=25.09 E-value=1e+03 Score=26.79 Aligned_cols=39 Identities=18% Similarity=0.270 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHhhcccccccccch
Q 004361 611 LASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHV 650 (759)
Q Consensus 611 laA~LLg~LlrRL~gLP~VVGyILAGIILGPsgLGlI~~~ 650 (759)
+.+.+++++..|+ +--.++..-++.+.++....++.++.
T Consensus 72 ig~~~~G~l~Dr~-Grr~~l~~~~~l~~i~~~~~a~~~~~ 110 (490)
T PRK10642 72 LGGLFFGMLGDKY-GRQKILAITIVIMSISTFCIGLIPSY 110 (490)
T ss_pred HHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHhcccH
Confidence 4566778888888 54333322333333333333444443
No 344
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.93 E-value=1.1e+03 Score=28.26 Aligned_cols=41 Identities=24% Similarity=0.393 Sum_probs=35.4
Q ss_pred hhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 004361 274 ENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEK 314 (759)
Q Consensus 274 ~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l~e~ae~ 314 (759)
..-|+|.-.|.-+-+.+.-++++.--||||+.+++.+...+
T Consensus 388 tqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se~L~R 428 (521)
T KOG1937|consen 388 TQRIKEIDGNIRKQEQDIVKILEETRELQKQENSESEALNR 428 (521)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45688899999999999999999999999999998876543
No 345
>PF06808 DctM: DctM-like transporters; InterPro: IPR010656 This domain represents a conserved region located towards the N terminus of the DctM subunit of the bacterial and archaeal TRAP C4-dicarboxylate transport (Dct) system permease. In general, C4-dicarboxylate transport systems allow C4-dicarboxylates like succinate, fumarate, and malate to be taken up. TRAP C4-dicarboxylate carriers are secondary carriers that use an electrochemical H+ gradient as the driving force for transport. DctM is an integral membrane protein that is one of the constituents of TRAP carriers [, ]. Note that many family members are hypothetical proteins.
Probab=24.58 E-value=1.1e+03 Score=26.94 Aligned_cols=119 Identities=13% Similarity=0.151 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHhhcCChhHHhhh
Q 004361 601 ASLFDVLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSM 680 (759)
Q Consensus 601 ~lLlqL~LILlaA~LLg~LlrRL~gLP~VVGyILAGIILGPsgLGlI~~~eiLe~LAEIGLIfLLFlaGLELDl~~LKr~ 680 (759)
.....+.+++..+.++.+++... ++|..++..+.++-.+|.. .-+.+.++++..|.-+|.-..
T Consensus 273 ~~~~~i~~iia~a~~~~~~l~~~-g~~~~i~~~i~~l~~~~~~-------------~l~l~~l~~lilG~~m~~~a~--- 335 (416)
T PF06808_consen 273 RTTGMILFIIAAAGIFSWVLTLT-GVPQAIAEFILSLSGSPWL-------------VLLLIMLILLILGMFMDTTAA--- 335 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc-CccHHHHHHHHhcCcchHH-------------HHHHHHHHHHHHhccccHHHH---
Confidence 33456677778888889998888 9999888888777666521 113455666677777775321
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhCCC---hHHHHHHHHHHhhccHHHHHHHHHHcCCCCChhHHHHH
Q 004361 681 KKYVFGLGSAQVLVTAVVVGLVAHFVSGLP---GPASIVIGNGLALSSTAVVLQVLQERGESTSRHGRATF 748 (759)
Q Consensus 681 ~K~iLvLAilgVLLp~~lVG~al~~lLGls---~~~ALLLGaILSaTSpaVVv~VLkELGLLnSe~GRlaL 748 (759)
. +-+..++.|.+ .-+|++ +...+++...++.-.||+...++--.++.+.+..++.-
T Consensus 336 ----~-ii~~pi~~P~~-------~~~Gidpi~~g~~~~~~~~ig~iTPPvgl~lfva~~ia~~~~~~i~~ 394 (416)
T PF06808_consen 336 ----I-IIVAPILAPIA-------QALGIDPIHFGVFMFYNAEIGLITPPVGLNLFVAAGIAGVPMEKIFR 394 (416)
T ss_pred ----H-HHHHHHHHHHH-------HHhCcchhhHHHHHHHHHHhcCCCCCccHHHHHHHHHhCCCHHHHHH
Confidence 1 11222333321 113443 23334555555566666666666555555555555443
No 346
>COG0387 ChaA Ca2+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=24.31 E-value=8.4e+02 Score=28.14 Aligned_cols=20 Identities=30% Similarity=0.436 Sum_probs=13.8
Q ss_pred CCchHHHHHHHHHhhccccc
Q 004361 625 GGSPVLGYLAAGILIGPYGL 644 (759)
Q Consensus 625 gLP~VVGyILAGIILGPsgL 644 (759)
..++.+..+.+.+.++|..+
T Consensus 32 ~~~~~~~fi~~~l~i~plA~ 51 (368)
T COG0387 32 QTGPVVIFIAALLAIIPLAF 51 (368)
T ss_pred hcccHHHHHHHHHHHHHHHH
Confidence 45666677888888887543
No 347
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=24.30 E-value=7.2e+02 Score=24.77 Aligned_cols=43 Identities=30% Similarity=0.291 Sum_probs=29.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhccc---HHHHHHHHHHhhc
Q 004361 320 LKAEEDVANIMLLAEQAVAFEIEATQRVND---AEIALQRAEKSLS 362 (759)
Q Consensus 320 ~kaeedvanim~laeqava~e~ea~q~~nd---aeial~ka~k~~~ 362 (759)
.+|++++..++--|++.+..|-+.+..--. ...|++.|+|-|.
T Consensus 107 ~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~qi~~la~~~A~kil~ 152 (174)
T PRK07352 107 KQAIEDMARLKQTAAADLSAEQERVIAQLRREAAELAIAKAESQLP 152 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888888888888765543222 3456777777664
No 348
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=24.28 E-value=2.4e+02 Score=24.31 Aligned_cols=43 Identities=23% Similarity=0.417 Sum_probs=32.2
Q ss_pred chhhHHHHHhhhHHHHHHHHHhhHHHHHHhh-hhHHHHHHHHHH
Q 004361 265 EEDGLLLAAENDIKECQANLANCETELRRLQ-SKKEELQKEVDR 307 (759)
Q Consensus 265 ~~~~~~~~a~~di~~~q~~l~~ce~el~~~q-~~k~elqkev~~ 307 (759)
+...++-.++.+|.+|...|..||.|++.+. +.+..++.+|..
T Consensus 22 ~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~ 65 (79)
T PF05008_consen 22 QRKSLIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRS 65 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4668889999999999999999999988775 444444444443
No 349
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=24.16 E-value=3.5e+02 Score=28.09 Aligned_cols=55 Identities=29% Similarity=0.394 Sum_probs=33.4
Q ss_pred hhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 004361 274 ENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVAN 328 (759)
Q Consensus 274 ~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l~e~ae~aq~~a~kaeedvan 328 (759)
.+.|++.+..+.+.+.+..-+-++|++..+|+.||..-+++.+.+..++|-.-.+
T Consensus 130 e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~~ 184 (190)
T PF05266_consen 130 ESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQS 184 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555566666666677777776666666666666654443
No 350
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=24.07 E-value=1.2e+03 Score=27.36 Aligned_cols=38 Identities=32% Similarity=0.344 Sum_probs=22.2
Q ss_pred HHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 004361 281 QANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMN 318 (759)
Q Consensus 281 q~~l~~ce~el~~~q~~k~elqkev~~l~e~ae~aq~~ 318 (759)
+-++...+.+|+.-|.+.+||+..-.+|...-.++...
T Consensus 209 kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e~~ 246 (420)
T COG4942 209 KKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAA 246 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34445555566666666666666666666555555533
No 351
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=23.96 E-value=6.8e+02 Score=26.72 Aligned_cols=74 Identities=26% Similarity=0.279 Sum_probs=42.6
Q ss_pred hHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 004361 268 GLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVANIMLLAEQAVAFEIEAT 344 (759)
Q Consensus 268 ~~~~~a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l~e~ae~aq~~a~kaeedvanim~laeqava~e~ea~ 344 (759)
..+..++.+..+....++.-=++=++++.+..++|..+.++.+.|+.|- .+.+|+.|+--+-..|-+-...++.
T Consensus 31 Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al---~~g~E~LAr~al~~~~~le~~~~~~ 104 (225)
T COG1842 31 QAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELAL---QAGNEDLAREALEEKQSLEDLAKAL 104 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555566666666666666666666555443 4556777766555555554444444
No 352
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=23.76 E-value=6e+02 Score=28.15 Aligned_cols=11 Identities=9% Similarity=0.344 Sum_probs=4.5
Q ss_pred HHHHHHhhhcc
Q 004361 338 AFEIEATQRVN 348 (759)
Q Consensus 338 a~e~ea~q~~n 348 (759)
...++-.++.|
T Consensus 126 ~~~L~~L~ktN 136 (314)
T PF04111_consen 126 SNQLDRLRKTN 136 (314)
T ss_dssp HHHHHCHHT--
T ss_pred HHHHHHHHhcC
Confidence 34455555544
No 353
>COG1268 BioY Uncharacterized conserved protein [General function prediction only]
Probab=23.75 E-value=7.2e+02 Score=25.92 Aligned_cols=62 Identities=26% Similarity=0.283 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhccccccc------c-cc-hhhHHHHHHHHHHHHHHHHhhcCC
Q 004361 603 LFDVLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSI------I-RH-VHGTKAIAEFGVVFLLFNIGLELS 673 (759)
Q Consensus 603 LlqL~LILlaA~LLg~LlrRL~gLP~VVGyILAGIILGPsgLGl------I-~~-~eiLe~LAEIGLIfLLFlaGLELD 673 (759)
-+|...+++++.++++-. +.=.++.|++.|.+==|..-|. + .+ -.++ +|+++-.|.+|.=.+
T Consensus 38 TlQ~~~V~LaG~llG~r~----G~ls~l~yl~lG~~GlPVFagg~gGi~~~~GPTgGyL-----~gfi~aa~l~G~l~~ 107 (184)
T COG1268 38 TLQTLAVMLAGLLLGPRL----GALSVLLYLLLGAIGLPVFAGGRGGIAVLFGPTGGYL-----IGFIIAAFLIGLLAE 107 (184)
T ss_pred eHHHHHHHHHHHHhchhH----HHHHHHHHHHHHHhCCCeecCCCCceeeeecCchhHH-----HHHHHHHHHHHHHHH
Confidence 467777777777666533 3336777999888755543222 1 11 2233 677888888887543
No 354
>PF11839 DUF3359: Protein of unknown function (DUF3359); InterPro: IPR021793 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 80 amino acids in length.
Probab=23.74 E-value=4.7e+02 Score=24.84 Aligned_cols=31 Identities=32% Similarity=0.319 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 004361 306 DRLNEVAEKAQMNALKAEEDVANIMLLAEQA 336 (759)
Q Consensus 306 ~~l~e~ae~aq~~a~kaeedvanim~laeqa 336 (759)
|.++..++.++-.+..|++.+...-.-|++|
T Consensus 31 d~~~~~a~~a~~~a~~a~~~A~~A~~~AdeA 61 (96)
T PF11839_consen 31 DEAQSTAEQAQATAASAQSAAASAQQRADEA 61 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3333333333333333333333333333333
No 355
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=23.72 E-value=3.3e+02 Score=30.40 Aligned_cols=18 Identities=22% Similarity=0.145 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 004361 151 DELRELLMNAMKELEVAQ 168 (759)
Q Consensus 151 ~~l~e~l~~a~~ele~a~ 168 (759)
.+++.-|+.|+.+|+.|+
T Consensus 99 ~~~~~~l~~a~A~l~~A~ 116 (397)
T PRK15030 99 ATYQATYDSAKGDLAKAQ 116 (397)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455556666666666554
No 356
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=23.69 E-value=3.9e+02 Score=30.38 Aligned_cols=10 Identities=10% Similarity=0.351 Sum_probs=4.4
Q ss_pred HHHHHHHHHH
Q 004361 686 GLGSAQVLVT 695 (759)
Q Consensus 686 vLAilgVLLp 695 (759)
..+.++.++-
T Consensus 82 lf~tiGLiiG 91 (356)
T COG4956 82 LFGTIGLIIG 91 (356)
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 357
>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes. Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me
Probab=23.54 E-value=9.2e+02 Score=25.73 Aligned_cols=125 Identities=18% Similarity=0.140 Sum_probs=75.5
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhchhHHHHHHHhhhHhHHHHHHHHhHHHHHHHHHHHHH
Q 004361 145 AEPPTTDELRELLMNAMKELEVAQLNSTMFEEKAQRISEAAIALKDEAANAWNNVNVTLDMVHEIVNEECIAKEAVHKAT 224 (759)
Q Consensus 145 ~~~~~~~~l~e~l~~a~~ele~a~~ns~~fe~kaq~ise~ai~l~d~a~~a~~~v~~~l~~iq~~~~~e~~akeav~~at 224 (759)
+..|.+++|..+-.+=.+.|-.+..=...|=+--|+|++.|.... +=.++-+.|-.|-++-+.=..-.+.+-++.
T Consensus 17 ~~~P~~~~li~~~~~Y~kal~a~~~a~~~~~dAl~kia~~A~~s~-----~sk~lG~~L~~i~~~~r~ie~~l~~~~~~~ 91 (223)
T cd07605 17 QFNPVLRNLIKAGKKYQKALQALSQAAKVFFDALAKIGELASQSR-----GSQELGEALKQIVDTHKSIEASLEQVAKAF 91 (223)
T ss_pred ccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888888887777777777777777788888999999999966 224677666655544322111111222222
Q ss_pred HHHHHHHHHHHHHHHHhhhhccCCCCCCCCcccccCCCCcchhhHHHHHhhhHHHHHHHHHhhHHHHHHhhhh
Q 004361 225 MALSLAEARLQVAIESLQDVKQEDDYPEGSTEDDAKSDGKEEDGLLLAAENDIKECQANLANCETELRRLQSK 297 (759)
Q Consensus 225 malslaearlq~a~e~~~~~~~~~~~~~~s~~~~~~~d~~~~~~~~~~a~~di~~~q~~l~~ce~el~~~q~~ 297 (759)
+---+ .|.++-. +.|.+.=-.....=+.|.|.+.+.|..|+.+|..+|.|
T Consensus 92 ~~~li-------------------~pLe~k~----e~d~k~i~~~~K~y~~E~K~~~~~l~K~~sel~Kl~KK 141 (223)
T cd07605 92 HGELI-------------------LPLEKKL----ELDQKVINKFEKDYKKEYKQKREDLDKARSELKKLQKK 141 (223)
T ss_pred HHHHH-------------------HHhhhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21111 1222211 22222222233344568899999999999999998876
No 358
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=23.51 E-value=1e+03 Score=26.33 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHhhcCChhHHhhh
Q 004361 658 EFGVVFLLFNIGLELSVERLSSM 680 (759)
Q Consensus 658 EIGLIfLLFlaGLELDl~~LKr~ 680 (759)
.++.+++=-.+|..++++.+.+.
T Consensus 28 ~~~q~ilG~~iG~~~t~~~l~~~ 50 (318)
T PF05145_consen 28 NAGQAILGVSIGSSFTPEVLAQL 50 (318)
T ss_pred HHHHHHHHHHHHcccCHHHHHHH
Confidence 34444444455666666555543
No 359
>COG0609 FepD ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism]
Probab=23.48 E-value=6.8e+02 Score=28.00 Aligned_cols=16 Identities=13% Similarity=0.090 Sum_probs=9.5
Q ss_pred CCchHHHHHHHHHhhc
Q 004361 625 GGSPVLGYLAAGILIG 640 (759)
Q Consensus 625 gLP~VVGyILAGIILG 640 (759)
++|.++.-+++|..++
T Consensus 54 RlPR~l~a~l~Ga~La 69 (334)
T COG0609 54 RLPRILLAILVGAALA 69 (334)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4566666666666554
No 360
>PRK12438 hypothetical protein; Provisional
Probab=23.46 E-value=1.7e+03 Score=28.94 Aligned_cols=20 Identities=25% Similarity=0.145 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHhhcCChhHH
Q 004361 658 EFGVVFLLFNIGLELSVERL 677 (759)
Q Consensus 658 EIGLIfLLFlaGLELDl~~L 677 (759)
-.|+++++-.+|.-+|.=.|
T Consensus 216 l~~~~~ll~A~~ywLdRy~L 235 (991)
T PRK12438 216 FAGAFVLLKAVAYWLDRYEL 235 (991)
T ss_pred HHHHHHHHHHHHHHHhhhhh
Confidence 33444444455665554443
No 361
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=23.45 E-value=1.1e+03 Score=26.51 Aligned_cols=135 Identities=16% Similarity=0.162 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHHhchhHHHHHHHhhhHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCC
Q 004361 173 MFEEKAQRISEAAIALKDEAANAWNNVNVTLDMVHEIVNEECIAKEAVHKATMALSLAEARLQVAIESLQDVKQEDDYPE 252 (759)
Q Consensus 173 ~fe~kaq~ise~ai~l~d~a~~a~~~v~~~l~~iq~~~~~e~~akeav~~atmalslaearlq~a~e~~~~~~~~~~~~~ 252 (759)
+|-.+++..-+.||.+-|..+.-..... .+..+| +......+.+.+....-.+.=.+.+..-....++.-......+.
T Consensus 38 ~~yQ~~EQAr~~A~~fA~~ld~~~~kl~-~Ms~~q-l~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~ 115 (301)
T PF06120_consen 38 YFYQNAEQARQEAIEFADSLDELKEKLK-EMSSTQ-LRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEKG 115 (301)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHH-hcCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 4567788888888877665443222221 222222 33444555566655555555555544444444431100001111
Q ss_pred CCcccccCCCCcchhhHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 004361 253 GSTEDDAKSDGKEEDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAE 313 (759)
Q Consensus 253 ~s~~~~~~~d~~~~~~~~~~a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l~e~ae 313 (759)
... ......-...+..+.++..+.+..|+.-+.+|.+.++|-.+.|+.+.-+.+..-
T Consensus 116 ~~~----~~~~~n~~~~~~~~t~~la~~t~~L~~~~~~l~q~~~k~~~~q~~l~~~~~~~~ 172 (301)
T PF06120_consen 116 ITE----NGYIINHLMSQADATRKLAEATRELAVAQERLEQMQSKASETQATLNDLTEQRI 172 (301)
T ss_pred CCc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 011111123355677888888888888888888888888888888876666554
No 362
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=23.23 E-value=1.2e+03 Score=26.88 Aligned_cols=56 Identities=18% Similarity=0.246 Sum_probs=33.9
Q ss_pred CCchHHHHHHHHHhhcccc--ccccc------chhhHHHHHHHHHHHHHHHHhhcCChhHHhhhh
Q 004361 625 GGSPVLGYLAAGILIGPYG--LSIIR------HVHGTKAIAEFGVVFLLFNIGLELSVERLSSMK 681 (759)
Q Consensus 625 gLP~VVGyILAGIILGPsg--LGlI~------~~eiLe~LAEIGLIfLLFlaGLELDl~~LKr~~ 681 (759)
+...+++.+++|+++| .. .+..+ ..+.-+.+..+.-.++..+.|.++++..+...+
T Consensus 245 ~~SGilAvvvaG~~~~-~~~~~~~~~~~~~~~~~~fwe~l~~~ln~~iFiLlG~~i~~~~~~~~~ 308 (429)
T COG0025 245 GVSGILAVVVAGLVLG-EAVRINLSPASARLRLSSFWEVLDFLLNGLLFVLLGAQLPLSLLLALG 308 (429)
T ss_pred CcchHHHHHHHHHHHh-hhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhh
Confidence 4455666666777776 21 11111 112345666666677777899999998887654
No 363
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=23.06 E-value=7.6e+02 Score=24.61 Aligned_cols=88 Identities=23% Similarity=0.248 Sum_probs=49.6
Q ss_pred HhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHHHHHhhhc---c
Q 004361 273 AENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQM-NALKAEEDVANIMLLAEQAVAFEIEATQRV---N 348 (759)
Q Consensus 273 a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l~e~ae~aq~-~a~kaeedvanim~laeqava~e~ea~q~~---n 348 (759)
|.+--.+.+..+.+.+.+|+..+.+.. +-++.-.+-|++... .-.+|++++..+..-|+..+..|-+.+..- .
T Consensus 61 Ae~~~~eA~~~~~e~e~~L~~a~~ea~---~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~I~~e~~~a~~~l~~~ 137 (175)
T PRK14472 61 AHSAKDEAEAILRKNRELLAKADAEAD---KIIREGKEYAEKLRAEITEKAHTEAKKMIASAKEEIEQEKRRALDVLRNE 137 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555555555544433322 222233333333222 235678888889889998888888776422 2
Q ss_pred cHHHHHHHHHHhhcC
Q 004361 349 DAEIALQRAEKSLSN 363 (759)
Q Consensus 349 daeial~ka~k~~~~ 363 (759)
=++.|++.|+|-+..
T Consensus 138 i~~lA~~~a~kil~~ 152 (175)
T PRK14472 138 VADLAVKGAEKIIRT 152 (175)
T ss_pred HHHHHHHHHHHHHHH
Confidence 245678888887753
No 364
>PF05082 Rop-like: Rop-like; InterPro: IPR007774 This family contains several uncharacterised bacterial proteins. These proteins are found in nitrogen fixation operons, so are likely to play a role in this process.; PDB: 3CSX_A 2JS5_B.
Probab=23.04 E-value=1.2e+02 Score=27.04 Aligned_cols=58 Identities=34% Similarity=0.424 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-hhhHH---HHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHH
Q 004361 297 KKEELQKEVDRLNEVAEKAQMNA-LKAEE---DVANIMLLAEQAVAFEIEATQRVNDAEIALQRAE 358 (759)
Q Consensus 297 ~k~elqkev~~l~e~ae~aq~~a-~kaee---dvanim~laeqava~e~ea~q~~ndaeial~ka~ 358 (759)
..++|++||.||+-+|-.+.|+= .-+|+ +..+||.+|+.+.. |-+..+.+.-.|..++
T Consensus 3 d~~eLk~evkKL~~~A~~~kmdLHDLaEdLP~~w~~i~~vA~~ty~----a~~~l~~ak~~L~~~e 64 (66)
T PF05082_consen 3 DIEELKKEVKKLNRKATQAKMDLHDLAEDLPTNWEEIPEVAQKTYD----AYAELDEAKAELKAAE 64 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTGGGHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHH----HHHHHHHHHHHHHHhh
Confidence 46799999999999999999874 34444 34679999888752 3333344444444443
No 365
>PF10225 DUF2215: Uncharacterized conserved protein (DUF2215); InterPro: IPR024233 This entry represents a domain that is found in a number of different proteins, including a family of transmembrane proteins.
Probab=23.03 E-value=9.6e+02 Score=25.79 Aligned_cols=29 Identities=24% Similarity=0.277 Sum_probs=15.4
Q ss_pred HHHHHhcCCCchHHHHHHHHHhhcccccc
Q 004361 617 VPIFQKIPGGSPVLGYLAAGILIGPYGLS 645 (759)
Q Consensus 617 g~LlrRL~gLP~VVGyILAGIILGPsgLG 645 (759)
..+.+.+|+-+.+.+.+++|.-+|-+.+.
T Consensus 55 ~~~~k~lPrk~~~~~~l~gg~~~~~y~l~ 83 (249)
T PF10225_consen 55 FQLSKLLPRKSMFYAVLYGGWSFGLYFLQ 83 (249)
T ss_pred HHHHHHccCcchhHHHHhhhhHHHHHHHH
Confidence 34444455555555566666655544443
No 366
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=22.92 E-value=1.9e+02 Score=28.82 Aligned_cols=40 Identities=35% Similarity=0.318 Sum_probs=35.1
Q ss_pred HHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHH
Q 004361 271 LAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNE 310 (759)
Q Consensus 271 ~~a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l~e 310 (759)
+.-...|.+.|.+--.-.+||...|.-.+.||+|.|.||.
T Consensus 9 E~LInrInelQQaKKk~~EELgEa~~l~eaL~~ELDsL~~ 48 (134)
T PF15233_consen 9 EDLINRINELQQAKKKSSEELGEAQALWEALQRELDSLNG 48 (134)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456778999998888889999999999999999999984
No 367
>TIGR00833 actII Transport protein. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate.
Probab=22.76 E-value=4.6e+02 Score=32.90 Aligned_cols=13 Identities=8% Similarity=0.258 Sum_probs=6.3
Q ss_pred HHHHHhhcCChhH
Q 004361 664 LLFNIGLELSVER 676 (759)
Q Consensus 664 LLFlaGLELDl~~ 676 (759)
+.++.|+.+|...
T Consensus 810 ~~il~glgvDY~I 822 (910)
T TIGR00833 810 FVLLVALGVDYNM 822 (910)
T ss_pred HHHHHHhhhchHH
Confidence 3444555555543
No 368
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=22.67 E-value=1.6e+03 Score=28.14 Aligned_cols=37 Identities=27% Similarity=0.321 Sum_probs=16.6
Q ss_pred hhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHH
Q 004361 274 ENDIKECQANLANCETELRRLQSKKEELQKEVDRLNE 310 (759)
Q Consensus 274 ~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l~e 310 (759)
.++.++.+....+++..+++++..+.+|+++..+|.+
T Consensus 521 ~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~ 557 (771)
T TIGR01069 521 SALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKE 557 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444443
No 369
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=22.61 E-value=2.5e+02 Score=31.35 Aligned_cols=86 Identities=17% Similarity=0.250 Sum_probs=51.5
Q ss_pred HHHHHHHHhhcCChhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCC--------hHHHHHHHHHHhhccHHHHHHH
Q 004361 661 VVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHFVSGLP--------GPASIVIGNGLALSSTAVVLQV 732 (759)
Q Consensus 661 LIfLLFlaGLELDl~~LKr~~K~iLvLAilgVLLp~~lVG~al~~lLGls--------~~~ALLLGaILSaTSpaVVv~V 732 (759)
+.+++|..|-.+|++.....-++...+.+.-+++.+ +++++...++|.. ....+.+..++..+...+-..+
T Consensus 53 ~~~~~~~~ga~i~~~~~~~~l~~g~~l~~~k~~~~~-~~~~~~~~~~g~~~i~~gl~~G~s~la~~a~l~~~N~~ly~~~ 131 (326)
T PRK05274 53 LAVFLFCMGASINLRATGTVLKKGGTLLLTKFAVAA-LVGVIAGKFIGEEGIRLGGFAGLSTLAIIAAMDNTNGGLYAAL 131 (326)
T ss_pred HHHHHHHcCCEEeccccchhhhhchhHHHHHHHHHH-HHHHHhhhcchHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 447889999999988766654444444344444442 3444444444431 2344555666777888888788
Q ss_pred HHHcCCCCChhHHHHH
Q 004361 733 LQERGESTSRHGRATF 748 (759)
Q Consensus 733 LkELGLLnSe~GRlaL 748 (759)
+.+.+.- .+.|..++
T Consensus 132 ~~~~g~~-~d~ga~i~ 146 (326)
T PRK05274 132 MGQYGTK-EDAGAFVL 146 (326)
T ss_pred HHHhCCC-CCcchHHH
Confidence 8887753 55555443
No 370
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=22.57 E-value=9.7e+02 Score=25.65 Aligned_cols=166 Identities=18% Similarity=0.201 Sum_probs=0.0
Q ss_pred hhHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH--------------HHhhhHHHHHHHHHH
Q 004361 267 DGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQM--------------NALKAEEDVANIMLL 332 (759)
Q Consensus 267 ~~~~~~a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l~e~ae~aq~--------------~a~kaeedvanim~l 332 (759)
++.+..|+++..+.+......+.++++.+...++|+++...+.+--++-+. ....++..++.+-..
T Consensus 18 eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee 97 (246)
T PF00769_consen 18 EEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEE 97 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhhhcccHHHHHHHHHHhhcCCCCccchhccccccCchhhHHhhhcCCCCCcccccccccccCCcccccc
Q 004361 333 AEQAVAFEIEATQRVNDAEIALQRAEKSLSNSSVDISERIKGYVSGDETAVKEEKAGSTDDVNVERDIDVPVNGDYLVSE 412 (759)
Q Consensus 333 aeqava~e~ea~q~~ndaeial~ka~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 412 (759)
.+..-+.=-+--+.+-.|..++.++...|...-.... ...
T Consensus 98 ~~~ke~Ea~~lq~el~~ar~~~~~ak~~L~~~~~~~~----------------------------------------~p~ 137 (246)
T PF00769_consen 98 SERKEEEAEELQEELEEAREDEEEAKEELLEVMSAPP----------------------------------------PPP 137 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HTTS------------------------------------------G
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----------------------------------------ccc
Q ss_pred ccCCCCCcccccchhhhhcccchhhhccCCcCCCC-chhhHHHHhhhcchhhhhhHHHhhhh
Q 004361 413 SSHDILPDKVSQSSEELYQSDELIDQENGKLNLDS-PKEAEVEAEKSKNVIQTKKQEMQKDL 473 (759)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~d~e~~~~~~~~-~k~~e~~~~~~k~~~q~kkqe~~~~~ 473 (759)
..|..-+........+-..++++.|-.+.--..++ -++--...+|+|. +|.+=+++..++
T Consensus 138 ~~~v~~~~~~~~~~~~~~~~~~s~dl~~~~~~~~~sEeeR~t~~EKnk~-lq~QL~~L~~EL 198 (246)
T PF00769_consen 138 HHPVAEPDEGDEDENDEENSEYSADLETDGDMKDRSEEERVTYAEKNKR-LQEQLKELKSEL 198 (246)
T ss_dssp GGS------------------EEEE---T-T--TCGGGC---HHHH-HH-HHHHHHHHHHHH
T ss_pred ccCCCCCCCCCccccccccccccccccccccccchhHHHHHHHHHhhHH-HHHHHHHHHHHH
No 371
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=22.42 E-value=4.6e+02 Score=31.45 Aligned_cols=37 Identities=19% Similarity=0.159 Sum_probs=18.4
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 004361 290 ELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDV 326 (759)
Q Consensus 290 el~~~q~~k~elqkev~~l~e~ae~aq~~a~kaeedv 326 (759)
++..++.++.++++++++++..-+..+-.....++++
T Consensus 422 ~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i 458 (650)
T TIGR03185 422 QIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAI 458 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555444444444344333
No 372
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=22.37 E-value=6.4e+02 Score=23.48 Aligned_cols=40 Identities=13% Similarity=0.256 Sum_probs=21.9
Q ss_pred hhHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHH
Q 004361 267 DGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVD 306 (759)
Q Consensus 267 ~~~~~~a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~ 306 (759)
+++...=...|..|+..+..|+.++..++.+..++|+++.
T Consensus 66 ~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~ 105 (110)
T TIGR02338 66 EEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQ 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555555555555555543
No 373
>PRK13027 C4-dicarboxylate transporter DctA; Reviewed
Probab=22.13 E-value=7.3e+02 Score=28.61 Aligned_cols=36 Identities=17% Similarity=0.035 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHHHHhhcCChhHHhhhhhhHHHH
Q 004361 652 GTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGL 687 (759)
Q Consensus 652 iLe~LAEIGLIfLLFlaGLELDl~~LKr~~K~iLvL 687 (759)
++-.++=+|+.-++-..--+..++.+...++..+..
T Consensus 191 ~im~laPigVfaliA~~~~~~g~~~l~~l~~~l~~~ 226 (421)
T PRK13027 191 FIIKLAPLGVLGAIAFTTGKYGVGSLKQLGMLVAVF 226 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 344455566665555444567788888777755433
No 374
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=21.82 E-value=2.1e+02 Score=26.17 Aligned_cols=45 Identities=27% Similarity=0.363 Sum_probs=34.8
Q ss_pred chhhHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHH
Q 004361 265 EEDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLN 309 (759)
Q Consensus 265 ~~~~~~~~a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l~ 309 (759)
.-++|..--+..|+..+..+.+.+.+++.++.+...++..+.++.
T Consensus 74 s~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 118 (120)
T PF02996_consen 74 SLEEAIEFLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQLY 118 (120)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346777777888888888888888888888888888777777665
No 375
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=21.82 E-value=3.6e+02 Score=32.28 Aligned_cols=32 Identities=25% Similarity=0.492 Sum_probs=20.9
Q ss_pred HHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHH
Q 004361 280 CQANLANCETELRRLQSKKEELQKEVDRLNEV 311 (759)
Q Consensus 280 ~q~~l~~ce~el~~~q~~k~elqkev~~l~e~ 311 (759)
....+.+.++++.+++.++.+|+.|.++|++.
T Consensus 91 ~~~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~ 122 (646)
T PRK05771 91 VEEELEKIEKEIKELEEEISELENEIKELEQE 122 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666667777777777777777766644
No 376
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=21.74 E-value=1.2e+03 Score=27.92 Aligned_cols=15 Identities=27% Similarity=0.516 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHhhcC
Q 004361 658 EFGVVFLLFNIGLEL 672 (759)
Q Consensus 658 EIGLIfLLFlaGLEL 672 (759)
-||++-++|..++.+
T Consensus 451 ~iGvi~i~~g~~l~~ 465 (646)
T PRK05771 451 LIGVIHLFLGLLLGF 465 (646)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555555555543
No 377
>PF09852 DUF2079: Predicted membrane protein (DUF2079); InterPro: IPR018650 This entry is represented by Sulfolobus virus STSV1, Orf64. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry contains a family of various integral membrane proteins with no known function.
Probab=21.73 E-value=7.4e+02 Score=28.32 Aligned_cols=47 Identities=19% Similarity=0.125 Sum_probs=31.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHH-HHhhcccccc
Q 004361 598 EEEASLFDVLWLLLASVIFVPIFQKIPGGSPVLGYLAA-GILIGPYGLS 645 (759)
Q Consensus 598 ~~~~lLlqL~LILlaA~LLg~LlrRL~gLP~VVGyILA-GIILGPsgLG 645 (759)
+....++|.+++.+.+..+..+.++. ..+.-.+.+++ .-++.|...+
T Consensus 59 ~~tLli~Qal~la~~~~pl~~lar~~-~~~~~~a~~~~~~ylL~p~~~~ 106 (449)
T PF09852_consen 59 PLTLLIVQALLLALGAIPLYRLARRR-LLSRRLALLIALAYLLSPGLQG 106 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHhHHHHh
Confidence 34577888888888888899999998 54555554443 3344565444
No 378
>KOG2447 consensus Oligosaccharyltransferase, delta subunit (ribophorin II) [Posttranslational modification, protein turnover, chaperones]
Probab=21.64 E-value=2.6e+02 Score=31.02 Aligned_cols=17 Identities=24% Similarity=0.477 Sum_probs=11.5
Q ss_pred CchHHHHHHHHHhhccc
Q 004361 626 GSPVLGYLAAGILIGPY 642 (759)
Q Consensus 626 LP~VVGyILAGIILGPs 642 (759)
-|.++.-+..|+|+-|.
T Consensus 195 p~~~lS~iFt~iiv~pl 211 (287)
T KOG2447|consen 195 PAKPLSDIFTGIIVSPL 211 (287)
T ss_pred ccchhHHHHHHHHHHHH
Confidence 35567777777777764
No 379
>PRK12911 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=21.63 E-value=7.2e+02 Score=33.20 Aligned_cols=23 Identities=9% Similarity=0.063 Sum_probs=12.1
Q ss_pred ChHHHHHHHHHHhhccHHHHHHH
Q 004361 710 PGPASIVIGNGLALSSTAVVLQV 732 (759)
Q Consensus 710 s~~~ALLLGaILSaTSpaVVv~V 732 (759)
++...+++|++.++-+..++.++
T Consensus 1034 gFAvTLiIGII~SmftALfVtP~ 1056 (1403)
T PRK12911 1034 GFALTLIIGIFSSMFTALFMTKF 1056 (1403)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666665444444443
No 380
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=21.57 E-value=2.4e+02 Score=26.97 Aligned_cols=48 Identities=27% Similarity=0.304 Sum_probs=34.4
Q ss_pred chhhHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHH
Q 004361 265 EEDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVA 312 (759)
Q Consensus 265 ~~~~~~~~a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l~e~a 312 (759)
+|+.--..-+++++.+.++|-.-+.|+..|.=+-.-|.|.|..|++=.
T Consensus 23 eEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El 70 (102)
T PF10205_consen 23 EEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEEL 70 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666788888888888888888777777777777777666533
No 381
>PRK10884 SH3 domain-containing protein; Provisional
Probab=21.50 E-value=4.7e+02 Score=27.53 Aligned_cols=83 Identities=10% Similarity=0.055 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCcccccCCCCcchhhHHHHHhhhHHHHHHHHHhhHH
Q 004361 210 VNEECIAKEAVHKATMALSLAEARLQVAIESLQDVKQEDDYPEGSTEDDAKSDGKEEDGLLLAAENDIKECQANLANCET 289 (759)
Q Consensus 210 ~~~e~~akeav~~atmalslaearlq~a~e~~~~~~~~~~~~~~s~~~~~~~d~~~~~~~~~~a~~di~~~q~~l~~ce~ 289 (759)
++.+-.+++.+.+..--+.-++++|.-+...+..-..+.. +.+......|.+.+....+...
T Consensus 85 Ls~~p~~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~------------------~~~~~~~~~~~~L~~~n~~L~~ 146 (206)
T PRK10884 85 LSTTPSLRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQ------------------QKVAQSDSVINGLKEENQKLKN 146 (206)
T ss_pred hcCCccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhhhHHHHHHHHHHHHH
Q 004361 290 ELRRLQSKKEELQKEVDRLNE 310 (759)
Q Consensus 290 el~~~q~~k~elqkev~~l~e 310 (759)
||..+|.+.++|+.+.+++++
T Consensus 147 ~l~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 147 QLIVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
No 382
>PF09930 DUF2162: Predicted transporter (DUF2162); InterPro: IPR017199 This group represents a predicted membrane transporter, MTH672 type.
Probab=21.35 E-value=5.3e+02 Score=27.58 Aligned_cols=81 Identities=11% Similarity=0.008 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHhhcCChhHHhhhhhhHHHHHHHHHH----HHHHHHHHHHH---HHhCCC-hHHHHHHHHHHhhccH
Q 004361 655 AIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVL----VTAVVVGLVAH---FVSGLP-GPASIVIGNGLALSST 726 (759)
Q Consensus 655 ~LAEIGLIfLLFlaGLELDl~~LKr~~K~iLvLAilgVL----Lp~~lVG~al~---~lLGls-~~~ALLLGaILSaTSp 726 (759)
....+.+.++|...|+.+--+ .++.++..-..+...+. +|+.++.+-.. -.++++ |...+++|.++..+.
T Consensus 68 ~~~h~imal~li~~Gi~ti~~-W~~~~~~~s~~t~lal~~PCPvCl~Ai~~S~~l~a~~~~~s~~~ig~~~g~if~i~i- 145 (224)
T PF09930_consen 68 MVIHLIMALLLIYAGIYTIKK-WKKSGKDSSRRTFLALSLPCPVCLTAIFFSIMLLAPSIGLSGWEIGLVLGLIFFILI- 145 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HcccCCCCcccchhhhhcCchHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH-
Confidence 444455666777888876433 32333222111111122 22211111111 223553 677778888777665
Q ss_pred HHHHHHHHHcC
Q 004361 727 AVVLQVLQERG 737 (759)
Q Consensus 727 aVVv~VLkELG 737 (759)
-++..+++..+
T Consensus 146 l~ss~i~r~~~ 156 (224)
T PF09930_consen 146 LLSSFIFRRLK 156 (224)
T ss_pred HHHHHHHHHhc
Confidence 33444444433
No 383
>COG2035 Predicted membrane protein [Function unknown]
Probab=21.27 E-value=4.4e+02 Score=29.24 Aligned_cols=35 Identities=20% Similarity=0.266 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHHHhhc--cccccc
Q 004361 609 LLLASVIFVPIFQKIPGGSPVLGYLAAGILIG--PYGLSI 646 (759)
Q Consensus 609 ILlaA~LLg~LlrRL~gLP~VVGyILAGIILG--PsgLGl 646 (759)
++.++.++.++.... |..+-...+|+++| |+.++.
T Consensus 69 i~~~a~ii~~ll~~y---p~~t~~fF~GlI~~sVp~llk~ 105 (276)
T COG2035 69 IFLFAKIIEYLLENY---PVPTLAFFAGLILGSVPSLLKE 105 (276)
T ss_pred HHHHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777766 66666788999998 444443
No 384
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=21.18 E-value=7.6e+02 Score=25.87 Aligned_cols=35 Identities=23% Similarity=0.271 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 004361 302 QKEVDRLNEVAEKAQMNALKAEEDVANIMLLAEQA 336 (759)
Q Consensus 302 qkev~~l~e~ae~aq~~a~kaeedvanim~laeqa 336 (759)
+|+++|+..++.+++.++.+|+.+-.+...-.+.+
T Consensus 152 ~ke~eK~~~K~~k~~~~~~~a~~~Y~~~v~~l~~~ 186 (239)
T cd07647 152 PKEAEKLKKKAAQCKTSAEEADSAYKSSIGCLEDA 186 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999988876655544
No 385
>PRK14127 cell division protein GpsB; Provisional
Probab=21.11 E-value=3e+02 Score=26.53 Aligned_cols=37 Identities=27% Similarity=0.358 Sum_probs=17.9
Q ss_pred HHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHH
Q 004361 270 LLAAENDIKECQANLANCETELRRLQSKKEELQKEVD 306 (759)
Q Consensus 270 ~~~a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~ 306 (759)
|..-..|+...........+|+++++.+..++|..+.
T Consensus 32 Ld~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 32 LDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3333344444444444555555555555555555444
No 386
>PRK10245 adrA diguanylate cyclase AdrA; Provisional
Probab=20.98 E-value=1.2e+03 Score=25.98 Aligned_cols=44 Identities=18% Similarity=0.194 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCc-------hHHHHHHHHHhhcccccc
Q 004361 601 ASLFDVLWLLLASVIFVPIFQKIPGGS-------PVLGYLAAGILIGPYGLS 645 (759)
Q Consensus 601 ~lLlqL~LILlaA~LLg~LlrRL~gLP-------~VVGyILAGIILGPsgLG 645 (759)
.+++-++..++--.+...+++|. ..| ..+=-+++|+.++-.+++
T Consensus 64 ~~~~l~~~~~~~p~~a~~~~~~~-~~~~~~~~~~l~~d~~~~g~~~~~~~~~ 114 (366)
T PRK10245 64 WWLLLVGWAFVWPHLAWQIASRA-VDPLSREIYNLKTDAVLAGMWVGVMGVN 114 (366)
T ss_pred HHHHHHHHHHHhHHHHHHHHHhC-CChhHHHHHHHHHHHHHHhHHHHHHccc
Confidence 33444444444445555666665 333 223334556655544433
No 387
>PF08287 DASH_Spc19: Spc19; InterPro: IPR013251 Spc19 is a component of the DASH complex. The DASH complex associates with the spindle pole body and is important for spindle and kinetochore integrity during cell division [, ].
Probab=20.86 E-value=3.3e+02 Score=27.34 Aligned_cols=22 Identities=41% Similarity=0.533 Sum_probs=19.8
Q ss_pred hHHHHHHhhhhHHHHHHHHHHH
Q 004361 287 CETELRRLQSKKEELQKEVDRL 308 (759)
Q Consensus 287 ce~el~~~q~~k~elqkev~~l 308 (759)
=..+|+.|+.||+.||..|.||
T Consensus 132 ~~~~Lk~L~~kKerL~y~verL 153 (153)
T PF08287_consen 132 ELERLKALRQKKERLKYSVERL 153 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 3569999999999999999986
No 388
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=20.82 E-value=2.8e+02 Score=29.65 Aligned_cols=49 Identities=31% Similarity=0.356 Sum_probs=33.8
Q ss_pred hHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 004361 268 GLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQ 316 (759)
Q Consensus 268 ~~~~~a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l~e~ae~aq 316 (759)
+-+.-.++|.+.-+..|..-+.+-..++..-+++|+|-|||-|...+-|
T Consensus 158 ~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq 206 (216)
T KOG1962|consen 158 ADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQ 206 (216)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3344556666666677777777777777777788888888777666554
No 389
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=20.72 E-value=1.6e+03 Score=27.38 Aligned_cols=78 Identities=21% Similarity=0.280 Sum_probs=38.2
Q ss_pred hHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 004361 268 GLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVANIMLLAEQAVAFEIEATQRV 347 (759)
Q Consensus 268 ~~~~~a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l~e~ae~aq~~a~kaeedvanim~laeqava~e~ea~q~~ 347 (759)
..+...+.++.-.++...-||.++.+|.....-|..++.++.-.-+.+-+.- +=-....|..-.||+..++.
T Consensus 148 ~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr--------~d~~n~~q~Lleel~f~~~~ 219 (546)
T KOG0977|consen 148 SRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLR--------VDLQNRVQTLLEELAFLKRI 219 (546)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH--------HHHHhHHHHHHHHHHHHHhc
Confidence 3444444444444445555555555544444444444443322211111111 11234556777788888888
Q ss_pred ccHHHH
Q 004361 348 NDAEIA 353 (759)
Q Consensus 348 ndaeia 353 (759)
+.-||=
T Consensus 220 h~~eI~ 225 (546)
T KOG0977|consen 220 HKQEIE 225 (546)
T ss_pred cHHHHH
Confidence 877764
No 390
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=20.64 E-value=3.3e+02 Score=27.82 Aligned_cols=39 Identities=23% Similarity=0.366 Sum_probs=25.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 004361 207 HEIVNEECIAKEAVHKATMALSLAEARLQVAIESLQDVK 245 (759)
Q Consensus 207 q~~~~~e~~akeav~~atmalslaearlq~a~e~~~~~~ 245 (759)
+....+...++..+.++...+..|+++++.+...++..+
T Consensus 43 ~~L~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (265)
T TIGR00999 43 KKLFEQGVIPRQEFESAEYALEEAQAEVQAAKSELRSAR 81 (265)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 334444455566667777778888888888877776654
No 391
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=20.51 E-value=1.1e+03 Score=25.50 Aligned_cols=14 Identities=14% Similarity=0.444 Sum_probs=7.2
Q ss_pred HHHHHHHHHHH-Hhc
Q 004361 610 LLASVIFVPIF-QKI 623 (759)
Q Consensus 610 LlaA~LLg~Ll-rRL 623 (759)
+++-..+|+++ +|.
T Consensus 13 v~~ii~lG~~~~~r~ 27 (321)
T TIGR00946 13 ILVVILLGYILGKRF 27 (321)
T ss_pred HHHHHHHHHHHHHHh
Confidence 33444455666 555
No 392
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=20.49 E-value=1.5e+03 Score=27.00 Aligned_cols=33 Identities=30% Similarity=0.367 Sum_probs=17.0
Q ss_pred cHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 004361 150 TDELRELLMNAMKELEVAQLNSTMFEEKAQRISEA 184 (759)
Q Consensus 150 ~~~l~e~l~~a~~ele~a~~ns~~fe~kaq~ise~ 184 (759)
++.|++.+..+...|+.-++ ...+++.++|.+.
T Consensus 258 i~~l~~~i~~~~~~l~~l~l--~~~~~~~~~i~~~ 290 (569)
T PRK04778 258 IQDLKEQIDENLALLEELDL--DEAEEKNEEIQER 290 (569)
T ss_pred HHHHHHHHHHHHHHHHhcCh--HHHHHHHHHHHHH
Confidence 55666666665555544333 3345555555443
No 393
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=20.27 E-value=5.3e+02 Score=31.18 Aligned_cols=25 Identities=16% Similarity=0.267 Sum_probs=19.5
Q ss_pred HHHHHhcCCCchHHHHHHHHHhhccc
Q 004361 617 VPIFQKIPGGSPVLGYLAAGILIGPY 642 (759)
Q Consensus 617 g~LlrRL~gLP~VVGyILAGIILGPs 642 (759)
....+|+ +..+++|.+++++++-|.
T Consensus 160 ys~Ak~~-~~np~~g~~ig~~l~~p~ 184 (610)
T TIGR01995 160 ITAAKRF-KVNPYLAAAIGAALLHPT 184 (610)
T ss_pred HHHHHHc-CCChHHHHHHHHHHHhHH
Confidence 4567777 888888888999887665
No 394
>PRK09579 multidrug efflux protein; Reviewed
Probab=20.26 E-value=6.5e+02 Score=32.15 Aligned_cols=29 Identities=14% Similarity=0.164 Sum_probs=20.9
Q ss_pred ChHHHHHHHHHHhhccHHHHHHHHHHcCC
Q 004361 710 PGPASIVIGNGLALSSTAVVLQVLQERGE 738 (759)
Q Consensus 710 s~~~ALLLGaILSaTSpaVVv~VLkELGL 738 (759)
.....++++.+++..-.|+++.++.+...
T Consensus 979 ~iigGL~~st~ltL~~iP~ly~l~~~~~~ 1007 (1017)
T PRK09579 979 VIATGMSIGTLFTLFVLPCIYTLLAKPDA 1007 (1017)
T ss_pred eeehHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 34566777777888888888888776543
No 395
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=20.25 E-value=3.9e+02 Score=28.96 Aligned_cols=52 Identities=21% Similarity=0.319 Sum_probs=41.5
Q ss_pred hhhHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 004361 266 EDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQM 317 (759)
Q Consensus 266 ~~~~~~~a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l~e~ae~aq~ 317 (759)
..+++..++.++-.|..++.+-+.++..++..+--++.++..+++.-.+++.
T Consensus 29 ~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~ 80 (239)
T COG1579 29 IRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEE 80 (239)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888888888888888888888888888888888888877776665543
No 396
>PRK11228 fecC iron-dicitrate transporter permease subunit; Provisional
Probab=20.23 E-value=6.4e+02 Score=27.98 Aligned_cols=42 Identities=10% Similarity=-0.054 Sum_probs=26.3
Q ss_pred CCchHHHHHHHHHhhccccc-------ccccchhh--HHHHHHHHHHHHHH
Q 004361 625 GGSPVLGYLAAGILIGPYGL-------SIIRHVHG--TKAIAEFGVVFLLF 666 (759)
Q Consensus 625 gLP~VVGyILAGIILGPsgL-------GlI~~~ei--Le~LAEIGLIfLLF 666 (759)
|+|+++.-+++|..++-.+. |.+-++.. +..-+.+|+++.++
T Consensus 51 RlPR~l~a~l~G~~La~sG~~lQ~l~rNpLa~P~ilGissGA~l~~~~~~~ 101 (323)
T PRK11228 51 RLPRSLVAVLIGASLALAGALLQTLTHNPLASPSLLGINSGAALAMALTSA 101 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccHhhHHHHHHHHHHHHHH
Confidence 67999999999998885542 22223333 45566677665443
No 397
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=20.18 E-value=1.1e+03 Score=25.29 Aligned_cols=39 Identities=26% Similarity=0.350 Sum_probs=22.1
Q ss_pred hhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 004361 275 NDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAE 313 (759)
Q Consensus 275 ~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l~e~ae 313 (759)
..|..-+.++...+.+++..+......+++.+|...+.+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~R~~~L~~ 128 (327)
T TIGR02971 90 RAAAKLFKDVAAQQATLNRLEAELETAQREVDRYRSLFR 128 (327)
T ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555666666666666666666665543
No 398
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=20.14 E-value=1.1e+03 Score=25.28 Aligned_cols=99 Identities=25% Similarity=0.246 Sum_probs=65.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCcccccCCCCcchhhHHHHHhhhHHHHHHHHHhhHHH
Q 004361 211 NEECIAKEAVHKATMALSLAEARLQVAIESLQDVKQEDDYPEGSTEDDAKSDGKEEDGLLLAAENDIKECQANLANCETE 290 (759)
Q Consensus 211 ~~e~~akeav~~atmalslaearlq~a~e~~~~~~~~~~~~~~s~~~~~~~d~~~~~~~~~~a~~di~~~q~~l~~ce~e 290 (759)
.+|+.+.+..++... -|-+..|..|...+... .|.... .++..+..-.+++..++....-++..
T Consensus 27 ~~El~~~~~L~~~Gk--iLeg~~Ld~aL~~~~~~-----~~~~~~---------~~e~~le~Le~el~~l~~~~~~~~~~ 90 (256)
T PF14932_consen 27 EEELQAFEELQKSGK--ILEGEALDEALKTISAF-----SPKLLE---------LEEEDLEALEEELEALQEYKELYEQL 90 (256)
T ss_pred HHHHHHHHHHHHcCC--cCCHHHHHHHHHHcccc-----cCCccc---------cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888887 35566677777776662 222211 13455666666666676767777777
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 004361 291 LRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEED 325 (759)
Q Consensus 291 l~~~q~~k~elqkev~~l~e~ae~aq~~a~kaeed 325 (759)
+..+|.-+..+.++..+|+..-+.++..-.++...
T Consensus 91 ~~~lq~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~ 125 (256)
T PF14932_consen 91 RNKLQQLDSSLSQELSELEGKEEEAQKKLKKAQKE 125 (256)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 77888888888888888887766665555555544
No 399
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=20.14 E-value=2.6e+02 Score=30.98 Aligned_cols=67 Identities=22% Similarity=0.276 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhchhHHHHHHHhhhHhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 004361 151 DELRELLMNAMKELEVAQLNSTMFEEKAQRISEAAIALKDEAANAWNNVNVTLDMVHEIVNEECIAKEAVHKATMALSLA 230 (759)
Q Consensus 151 ~~l~e~l~~a~~ele~a~~ns~~fe~kaq~ise~ai~l~d~a~~a~~~v~~~l~~iq~~~~~e~~akeav~~atmalsla 230 (759)
.+++.-|+.|+.+|+.|+..-. .|+ ..++-.++...+-...+..+.+|...+..|
T Consensus 95 ~~~~~~l~~a~a~l~~a~a~~~---------------------~a~----~~~~R~~~L~~~~~is~~~~d~a~~~~~~a 149 (385)
T PRK09859 95 APLQAELNSAKGSLAKALSTAS---------------------NAR----ITFNRQASLLKTNYVSRQDYDTARTQLNEA 149 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---------------------HHH----HHHHHHHHHHhcCCcCHHHHHHHHHHHHHH
Confidence 4677778888888877654211 111 122333344444455555555555555555
Q ss_pred HHHHHHHHHHhh
Q 004361 231 EARLQVAIESLQ 242 (759)
Q Consensus 231 earlq~a~e~~~ 242 (759)
+++++.|...++
T Consensus 150 ~a~~~~a~a~l~ 161 (385)
T PRK09859 150 EANVTVAKAAVE 161 (385)
T ss_pred HHHHHHHHHHHH
Confidence 555555544443
No 400
>PRK09903 putative transporter YfdV; Provisional
Probab=20.10 E-value=8.2e+02 Score=26.41 Aligned_cols=13 Identities=0% Similarity=-0.033 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHhc
Q 004361 611 LASVIFVPIFQKI 623 (759)
Q Consensus 611 laA~LLg~LlrRL 623 (759)
++-.++|++++|.
T Consensus 13 f~ii~lG~~~~r~ 25 (314)
T PRK09903 13 IVIMLLGYFSGRR 25 (314)
T ss_pred HHHHHHHHHHHHh
Confidence 3334445555655
No 401
>PRK15445 arsenical pump membrane protein; Provisional
Probab=20.10 E-value=1.2e+03 Score=26.11 Aligned_cols=24 Identities=17% Similarity=0.075 Sum_probs=11.9
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHH
Q 004361 612 ASVIFVPIFQKIPGGSPVLGYLAAG 636 (759)
Q Consensus 612 aA~LLg~LlrRL~gLP~VVGyILAG 636 (759)
+..++.++.++. ++|..+.-+++.
T Consensus 8 ~~~~~~~~~~~~-~ip~~~~all~~ 31 (427)
T PRK15445 8 LLTLVLVIWQPK-GLGIGWSALLGA 31 (427)
T ss_pred HHHHHHHhcccC-CCChHHHHHHHH
Confidence 333444666664 567554333333
No 402
>PRK09765 PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC; Provisional
Probab=20.07 E-value=6.5e+02 Score=30.49 Aligned_cols=30 Identities=20% Similarity=0.256 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHhhchhHHHHHHHHhhhhhh
Q 004361 512 SIFQGLMEYARKQLPKLVLGFLLFGAGVAF 541 (759)
Q Consensus 512 ~vf~~l~~s~~~q~pklv~g~~l~gag~~~ 541 (759)
.+++.||--.---.|-+|.|=+|++.+..+
T Consensus 285 ~~~~~lm~gvs~miP~vv~gGil~a~~~~~ 314 (631)
T PRK09765 285 ELKQALLSGISFAVPLIVAGGTVLAVAVLL 314 (631)
T ss_pred HHHHHHHhCcchhhHHHHHhHHHHHHHHHH
Confidence 467778877766788888888888877554
No 403
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=20.02 E-value=2.6e+02 Score=25.81 Aligned_cols=42 Identities=19% Similarity=0.326 Sum_probs=25.7
Q ss_pred hhhHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHH
Q 004361 266 EDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDR 307 (759)
Q Consensus 266 ~~~~~~~a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~ 307 (759)
-++|..--.+.+...+..+.+++.++..++.+..+++..+.+
T Consensus 85 ~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~ 126 (129)
T cd00890 85 LEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQ 126 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455665566666666666666666666666666666655544
Done!