Query 004361
Match_columns 759
No_of_seqs 209 out of 1195
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 22:47:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004361.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004361hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zcd_A Na(+)/H(+) antiporter 1 97.5 5.6E-05 1.9E-09 82.1 4.9 102 652-758 59-167 (388)
2 3vkg_A Dynein heavy chain, cyt 93.9 3.5 0.00012 55.4 22.9 63 266-328 2012-2074(3245)
3 3vkg_A Dynein heavy chain, cyt 93.5 1.3 4.5E-05 59.2 18.2 51 266-316 2019-2069(3245)
4 2akf_A Coronin-1A; coiled coil 91.8 0.14 4.9E-06 37.3 3.4 27 285-311 2-28 (32)
5 1i84_S Smooth muscle myosin he 90.7 0.84 2.9E-05 55.5 10.8 18 150-167 859-876 (1184)
6 3zux_A Transporter, ASBTNM; tr 90.1 2.7 9.3E-05 44.2 12.8 75 632-711 23-101 (332)
7 2efr_A General control protein 89.7 9.1 0.00031 37.1 15.0 111 184-309 43-153 (155)
8 1i84_S Smooth muscle myosin he 89.5 0.37 1.3E-05 58.6 6.4 30 149-178 865-894 (1184)
9 3u59_A Tropomyosin beta chain; 89.0 1.8 6.2E-05 38.5 8.9 60 270-329 25-91 (101)
10 1c1g_A Tropomyosin; contractIl 88.6 16 0.00056 34.3 26.4 38 273-310 109-146 (284)
11 3u1c_A Tropomyosin alpha-1 cha 86.6 3.1 0.00011 37.3 8.9 59 271-329 26-91 (101)
12 2l0e_A Sodium/hydrogen exchang 85.1 0.15 5.3E-06 37.7 -0.2 29 710-738 2-30 (33)
13 3c3g_A Alpha/beta peptide with 72.8 3.9 0.00013 30.5 3.8 27 286-312 4-30 (33)
14 1ic2_A Tropomyosin alpha chain 72.2 16 0.00054 31.3 8.2 55 269-323 21-75 (81)
15 2oxj_A Hybrid alpha/beta pepti 72.0 4.2 0.00014 30.5 3.8 27 286-312 5-31 (34)
16 3c3f_A Alpha/beta peptide with 70.0 4.9 0.00017 30.1 3.8 27 286-312 5-31 (34)
17 2bni_A General control protein 68.9 5.3 0.00018 30.0 3.8 27 286-312 5-31 (34)
18 3m48_A General control protein 67.3 6 0.00021 29.5 3.8 26 287-312 5-30 (33)
19 3nmd_A CGMP dependent protein 67.1 6.3 0.00021 34.0 4.5 53 254-308 14-66 (72)
20 2wq1_A General control protein 66.7 6.3 0.00022 29.4 3.8 27 286-312 4-30 (33)
21 4dk0_A Putative MACA; alpha-ha 64.9 11 0.00037 38.9 6.7 17 281-297 121-137 (369)
22 1kd8_A GABH AIV, GCN4 acid bas 64.6 7.2 0.00024 29.6 3.8 28 286-313 5-32 (36)
23 1uo4_A General control protein 63.8 7.7 0.00026 29.1 3.8 27 286-312 5-31 (34)
24 1kd8_B GABH BLL, GCN4 acid bas 63.7 7.6 0.00026 29.5 3.8 28 286-313 5-32 (36)
25 2r2v_A GCN4 leucine zipper; co 63.1 9.8 0.00034 28.6 4.3 28 285-312 4-31 (34)
26 2hy6_A General control protein 56.5 12 0.00042 28.0 3.8 27 286-312 5-31 (34)
27 4dk0_A Putative MACA; alpha-ha 55.1 21 0.00073 36.6 6.9 31 270-300 117-147 (369)
28 2ocy_A RAB guanine nucleotide 53.3 1.2E+02 0.0043 29.3 11.4 98 267-364 19-141 (154)
29 2v4h_A NF-kappa-B essential mo 52.3 23 0.00079 32.7 5.8 40 275-314 24-63 (110)
30 2yxy_A Hypothetical conserved 52.1 12 0.00042 34.8 4.0 30 297-326 15-44 (115)
31 1ic2_A Tropomyosin alpha chain 50.4 1.2E+02 0.004 25.8 10.1 59 272-330 10-68 (81)
32 3mq9_A Bone marrow stromal ant 49.5 2.5E+02 0.0087 29.9 14.4 24 290-313 437-460 (471)
33 1sf9_A YFHH hypothetical prote 49.4 12 0.00043 35.2 3.7 32 295-326 31-62 (128)
34 2f1m_A Acriflavine resistance 47.3 90 0.0031 30.8 9.8 17 227-243 69-85 (277)
35 2v4h_A NF-kappa-B essential mo 47.1 34 0.0012 31.6 6.0 47 266-314 36-82 (110)
36 3fpp_A Macrolide-specific effl 46.8 20 0.00069 36.5 5.1 15 223-237 88-102 (341)
37 3oja_B Anopheles plasmodium-re 45.7 2.2E+02 0.0077 31.0 13.5 29 301-329 542-570 (597)
38 2i1j_A Moesin; FERM, coiled-co 44.3 41 0.0014 38.1 7.6 24 449-473 504-527 (575)
39 1wt6_A Myotonin-protein kinase 42.0 90 0.0031 27.5 7.6 47 268-314 24-70 (81)
40 3v5u_A Uncharacterized membran 42.0 2.6E+02 0.0088 29.4 12.7 43 527-569 8-58 (320)
41 3hnw_A Uncharacterized protein 41.3 73 0.0025 30.0 7.6 43 267-309 88-130 (138)
42 3oja_B Anopheles plasmodium-re 40.5 3.9E+02 0.013 29.1 14.5 26 283-308 545-570 (597)
43 2eqb_B RAB guanine nucleotide 39.5 2E+02 0.0068 26.0 9.7 28 269-296 6-33 (97)
44 3mq9_A Bone marrow stromal ant 37.9 1.1E+02 0.0039 32.6 9.5 90 266-362 371-460 (471)
45 2dfs_A Myosin-5A; myosin-V, in 37.5 6.5E+02 0.022 30.8 18.0 16 294-309 1028-1043(1080)
46 2w6a_A ARF GTPase-activating p 37.1 73 0.0025 26.7 5.9 40 269-308 21-60 (63)
47 2fxo_A Myosin heavy chain, car 36.6 1.9E+02 0.0064 26.5 9.5 62 267-328 12-73 (129)
48 1nlw_A MAD protein, MAX dimeri 36.5 53 0.0018 28.2 5.4 43 266-308 38-80 (80)
49 3na7_A HP0958; flagellar bioge 36.2 3.5E+02 0.012 27.2 22.2 44 270-313 92-135 (256)
50 2i1j_A Moesin; FERM, coiled-co 36.0 38 0.0013 38.4 5.6 23 164-186 300-322 (575)
51 1wt6_A Myotonin-protein kinase 35.7 1.1E+02 0.0038 26.9 7.2 37 268-304 38-74 (81)
52 3nmd_A CGMP dependent protein 34.4 89 0.003 27.0 6.3 37 277-313 21-57 (72)
53 3mq7_A Bone marrow stromal ant 33.9 1.4E+02 0.0049 27.9 8.0 65 226-316 26-91 (121)
54 3htk_A Structural maintenance 33.6 1.7E+02 0.006 23.0 7.7 43 275-317 5-47 (60)
55 3lnn_A Membrane fusion protein 33.1 1.3E+02 0.0045 30.7 8.7 18 220-237 100-117 (359)
56 2b5u_A Colicin E3; high resolu 33.1 6E+02 0.021 29.0 19.9 85 146-242 289-373 (551)
57 4dve_A Biotin transporter BIOY 32.9 3.8E+02 0.013 26.6 13.6 59 604-671 50-116 (198)
58 3m9b_A Proteasome-associated A 32.5 46 0.0016 34.6 5.0 42 268-309 54-95 (251)
59 1jcd_A Major outer membrane li 32.3 1.2E+02 0.0042 24.5 6.4 39 284-322 6-44 (52)
60 1uii_A Geminin; human, DNA rep 32.1 1.3E+02 0.0043 26.7 7.0 46 272-317 33-81 (83)
61 2rq6_A ATP synthase epsilon ch 31.6 62 0.0021 30.2 5.4 78 77-168 30-107 (138)
62 3csx_A Putative uncharacterize 31.0 52 0.0018 29.0 4.4 59 297-359 16-78 (81)
63 1wdg_A E2 glycoprotein; MHV, c 31.0 74 0.0025 28.4 5.3 30 187-216 11-40 (94)
64 2wuj_A Septum site-determining 30.0 53 0.0018 26.5 4.0 34 278-311 23-56 (57)
65 3bas_A Myosin heavy chain, str 29.2 2.3E+02 0.008 24.5 8.3 46 266-311 12-57 (89)
66 1vcs_A Vesicle transport throu 29.2 78 0.0027 28.1 5.4 52 266-317 36-95 (102)
67 3fpp_A Macrolide-specific effl 28.9 1.5E+02 0.0051 30.0 8.2 37 202-238 98-134 (341)
68 1nkp_B MAX protein, MYC proto- 28.8 73 0.0025 27.0 5.0 45 264-308 36-80 (83)
69 1vf7_A Multidrug resistance pr 28.6 1.2E+02 0.0041 31.6 7.6 61 151-243 77-137 (369)
70 4dx5_A Acriflavine resistance 27.7 1.1E+02 0.0038 36.5 7.9 16 613-629 885-900 (1057)
71 2beq_A E2 glycoprotein; viral 26.6 62 0.0021 24.9 3.6 24 193-216 5-28 (38)
72 2l27_B Peptide agonist; CRF, E 26.5 31 0.0011 26.5 1.9 27 150-176 9-37 (38)
73 1m1j_C Fibrinogen gamma chain; 26.4 2.9E+02 0.0099 30.4 10.3 38 273-310 89-126 (409)
74 4gkw_A Spindle assembly abnorm 25.9 3.2E+02 0.011 26.2 9.1 35 274-308 17-51 (167)
75 2pms_C Pneumococcal surface pr 25.5 1.3E+02 0.0045 28.3 6.3 40 273-316 49-88 (125)
76 2etd_A LEMA protein; bromodoma 24.6 3.5E+02 0.012 26.1 9.5 19 186-204 14-32 (171)
77 1fxk_C Protein (prefoldin); ar 24.6 1.6E+02 0.0056 26.5 6.8 46 264-309 84-129 (133)
78 2rmf_A Urocortin, HUCN1; CRF l 24.6 50 0.0017 25.6 2.7 27 150-176 11-39 (40)
79 2js5_A Uncharacterized protein 24.4 61 0.0021 27.9 3.6 41 297-337 4-48 (71)
80 1nkp_A C-MYC, MYC proto-oncoge 24.1 1.5E+02 0.005 25.8 6.1 44 265-308 42-85 (88)
81 1p9i_A Cortexillin I/GCN4 hybr 23.1 87 0.003 22.6 3.6 25 281-305 5-29 (31)
82 3azd_A Short alpha-tropomyosin 22.6 38 0.0013 25.5 1.7 29 289-317 4-32 (37)
83 2qyw_A Vesicle transport throu 22.5 1.3E+02 0.0044 26.8 5.5 45 265-309 46-98 (102)
84 3u59_A Tropomyosin beta chain; 21.6 4.1E+02 0.014 23.3 10.0 45 273-317 21-65 (101)
85 3zux_A Transporter, ASBTNM; tr 21.6 5.6E+02 0.019 26.7 11.0 24 699-722 244-267 (332)
86 3ter_A Mammalian stromal inter 21.5 4E+02 0.014 25.4 8.8 117 147-294 5-123 (136)
87 3u1c_A Tropomyosin alpha-1 cha 21.5 4.2E+02 0.015 23.4 10.1 54 276-329 17-70 (101)
88 2eqb_B RAB guanine nucleotide 21.2 2.2E+02 0.0074 25.8 6.7 43 284-326 7-49 (97)
89 2zqm_A Prefoldin beta subunit 21.2 3.7E+02 0.013 23.3 8.2 30 283-312 78-107 (117)
90 2zy9_A Mg2+ transporter MGTE; 20.5 8.4E+02 0.029 26.5 13.4 10 671-680 369-378 (473)
91 2y44_A GARP, glutamic acid/ala 20.4 6.5E+02 0.022 25.1 13.2 34 291-324 149-182 (184)
92 2zqm_A Prefoldin beta subunit 20.4 2E+02 0.0067 25.1 6.3 43 266-308 68-110 (117)
93 3vou_A ION transport 2 domain 20.3 1.8E+02 0.0062 26.6 6.3 13 708-720 50-62 (148)
94 3oja_A Leucine-rich immune mol 20.2 5.2E+02 0.018 27.6 10.8 51 267-317 406-456 (487)
No 1
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A
Probab=97.52 E-value=5.6e-05 Score=82.07 Aligned_cols=102 Identities=15% Similarity=0.087 Sum_probs=80.5
Q ss_pred hHHHHHHHHHHHHHHHHhhcCChhHH----hhhhh--hHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhcc
Q 004361 652 GTKAIAEFGVVFLLFNIGLELSVERL----SSMKK--YVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSS 725 (759)
Q Consensus 652 iLe~LAEIGLIfLLFlaGLELDl~~L----Kr~~K--~iLvLAilgVLLp~~lVG~al~~lLGls~~~ALLLGaILSaTS 725 (759)
...-+.+..+.++||.+|+|++.+.+ ++.++ .++..++.++++|++ + ++.++.....+...+.+.+.|+
T Consensus 59 l~~windglm~lFff~vGLEik~e~l~G~L~~~~~a~~p~~aAlgGmivP~~-i----y~~~~~~~~~~~~gw~ip~ATd 133 (388)
T 1zcd_A 59 MLLWINDALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAIGGMIVPAL-L----YLAFNYADPITREGWAIPAATD 133 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHH-H----HGGGCCSSTTHHHHTSSSSCCC
T ss_pred HHHHHhhHhHHHHHHHHHHHhhHHHhcchhhhhhhHHHHHHHHHHHHHHHHH-H----HHHHhcCChhhhhhhHHHHHHH
Confidence 45567888999999999999999877 55555 367788889999964 3 2445665566667777888899
Q ss_pred HHHHHHHHHHcCCCC-ChhHHHHHHHHHHHHhhc
Q 004361 726 TAVVLQVLQERGEST-SRHGRATFSVLLFQVTLR 758 (759)
Q Consensus 726 paVVv~VLkELGLLn-Se~GRlaLSalVLqDIls 758 (759)
.+..+.+|..+|... +..+..+++.+++||+.+
T Consensus 134 IAfal~vL~~lg~~~p~~l~~flLalAvvDDl~a 167 (388)
T 1zcd_A 134 IAFALGVLALLGSRVPLALKIFLMALAIIDDLGA 167 (388)
T ss_dssp HHHHHHHHHSSCSSSCSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHH
Confidence 999999999988764 445699999999999864
No 2
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=93.89 E-value=3.5 Score=55.38 Aligned_cols=63 Identities=14% Similarity=0.123 Sum_probs=40.6
Q ss_pred hhhHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 004361 266 EDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVAN 328 (759)
Q Consensus 266 ~~~~~~~a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l~e~ae~aq~~a~kaeedvan 328 (759)
..+++..|+++....++.|.+++++|..++.+..+||++-+......++-+..+.+.+.-+..
T Consensus 2012 kr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~r 2074 (3245)
T 3vkg_A 2012 LREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDR 2074 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777777777777777777777666655555555555444444333
No 3
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=93.53 E-value=1.3 Score=59.23 Aligned_cols=51 Identities=12% Similarity=0.155 Sum_probs=28.7
Q ss_pred hhhHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 004361 266 EDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQ 316 (759)
Q Consensus 266 ~~~~~~~a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l~e~ae~aq 316 (759)
-++.+..|++...++|+.|++.+++|..+|.+-+++.+|..+|.+-++..+
T Consensus 2019 ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~ 2069 (3245)
T 3vkg_A 2019 LENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVK 2069 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666666666555554444444444444443
No 4
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=91.82 E-value=0.14 Score=37.29 Aligned_cols=27 Identities=33% Similarity=0.566 Sum_probs=24.3
Q ss_pred HhhHHHHHHhhhhHHHHHHHHHHHHHH
Q 004361 285 ANCETELRRLQSKKEELQKEVDRLNEV 311 (759)
Q Consensus 285 ~~ce~el~~~q~~k~elqkev~~l~e~ 311 (759)
+..|+++|.||....+|||.||||.+-
T Consensus 2 srlee~~r~l~~ivq~lq~r~drle~t 28 (32)
T 2akf_A 2 SRLEEDVRNLNAIVQKLQERLDRLEET 28 (32)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357899999999999999999999874
No 5
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=90.68 E-value=0.84 Score=55.49 Aligned_cols=18 Identities=17% Similarity=0.069 Sum_probs=7.8
Q ss_pred cHHHHHHHHHHHHHHHHH
Q 004361 150 TDELRELLMNAMKELEVA 167 (759)
Q Consensus 150 ~~~l~e~l~~a~~ele~a 167 (759)
+.+|++-|.+.+.+|+..
T Consensus 859 l~~L~~eL~el~~~L~~l 876 (1184)
T 1i84_S 859 MQAKDEELQRTKERQQKA 876 (1184)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444433
No 6
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=90.13 E-value=2.7 Score=44.23 Aligned_cols=75 Identities=16% Similarity=0.141 Sum_probs=42.2
Q ss_pred HHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHhhcCChhHHhhh---hhhHHHHHHHHHH-HHHHHHHHHHHHHh
Q 004361 632 YLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSM---KKYVFGLGSAQVL-VTAVVVGLVAHFVS 707 (759)
Q Consensus 632 yILAGIILGPsgLGlI~~~eiLe~LAEIGLIfLLFlaGLELDl~~LKr~---~K~iLvLAilgVL-Lp~~lVG~al~~lL 707 (759)
.+++|+++|-...+... .+.....+++.++||..|+.++++.+++. ++..+...+..++ .|. +++++.+++
T Consensus 23 ~i~~~~~lg~~~P~~~~---~~~~~i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~vi~Pl--l~~~l~~~~ 97 (332)
T 3zux_A 23 WAALFAAAAFFAPDTFK---WAGPYIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPA--TAWCLSKLL 97 (332)
T ss_dssp HHHHHHHHHHHCGGGTG---GGGGGHHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHHHHHH--HHHHHHHHT
T ss_pred HHHHHHHHHHHcchhhh---hhHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHHHHHH--HHHHHHHHh
Confidence 45566666643322211 12233456788999999999999999853 3433332333433 343 345555556
Q ss_pred CCCh
Q 004361 708 GLPG 711 (759)
Q Consensus 708 Gls~ 711 (759)
+.+.
T Consensus 98 ~l~~ 101 (332)
T 3zux_A 98 NLPA 101 (332)
T ss_dssp TCCH
T ss_pred CCCh
Confidence 6654
No 7
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=89.72 E-value=9.1 Score=37.09 Aligned_cols=111 Identities=22% Similarity=0.227 Sum_probs=82.8
Q ss_pred HHHhchhHHHHHHHhhhHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCcccccCCCC
Q 004361 184 AAIALKDEAANAWNNVNVTLDMVHEIVNEECIAKEAVHKATMALSLAEARLQVAIESLQDVKQEDDYPEGSTEDDAKSDG 263 (759)
Q Consensus 184 ~ai~l~d~a~~a~~~v~~~l~~iq~~~~~e~~akeav~~atmalslaearlq~a~e~~~~~~~~~~~~~~s~~~~~~~d~ 263 (759)
....|.++-..+-+++.|.=..=..--.+|-.-++.+...+.-|--||.|-.-|.-+..-.. +++
T Consensus 43 k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLE---------------k~i 107 (155)
T 2efr_A 43 KSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLE---------------KSI 107 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHH
T ss_pred HHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHH
Confidence 33445555555556665533333333345666778888889999999999988877766532 233
Q ss_pred cchhhHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHH
Q 004361 264 KEEDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLN 309 (759)
Q Consensus 264 ~~~~~~~~~a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l~ 309 (759)
.+=+..+...++..+.++..|...=.+|..++.+--+|.+||.||.
T Consensus 108 d~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~~~~~ 153 (155)
T 2efr_A 108 DDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEVARLK 153 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence 3456788899999999999999999999999999999999999985
No 8
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=89.50 E-value=0.37 Score=58.57 Aligned_cols=30 Identities=20% Similarity=0.138 Sum_probs=14.8
Q ss_pred CcHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 004361 149 TTDELRELLMNAMKELEVAQLNSTMFEEKA 178 (759)
Q Consensus 149 ~~~~l~e~l~~a~~ele~a~~ns~~fe~ka 178 (759)
.+++|++-|.+..++++..+-.-.-++++.
T Consensus 865 eL~el~~~L~~le~~l~ele~~l~~Le~e~ 894 (1184)
T 1i84_S 865 ELQRTKERQQKAEAELKELEQKHTQLCEEK 894 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666665555554443333333333
No 9
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=89.03 E-value=1.8 Score=38.55 Aligned_cols=60 Identities=32% Similarity=0.367 Sum_probs=46.1
Q ss_pred HHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH-------HHhhhHHHHHHH
Q 004361 270 LLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQM-------NALKAEEDVANI 329 (759)
Q Consensus 270 ~~~a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l~e~ae~aq~-------~a~kaeedvani 329 (759)
...++.++++........|.++..||.|..-|+.++++.++-+..++- .+.+||.+|+++
T Consensus 25 ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasL 91 (101)
T 3u59_A 25 AEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASL 91 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777888888999999999999999999987777666654 566677777764
No 10
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=88.55 E-value=16 Score=34.28 Aligned_cols=38 Identities=11% Similarity=0.230 Sum_probs=16.2
Q ss_pred HhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHH
Q 004361 273 AENDIKECQANLANCETELRRLQSKKEELQKEVDRLNE 310 (759)
Q Consensus 273 a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l~e 310 (759)
...++.+++..+..++.++..++....+++.++..+..
T Consensus 109 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (284)
T 1c1g_A 109 ALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEI 146 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 33334444444444444444444444444444444433
No 11
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=86.61 E-value=3.1 Score=37.25 Aligned_cols=59 Identities=27% Similarity=0.310 Sum_probs=43.1
Q ss_pred HHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH-------HHhhhHHHHHHH
Q 004361 271 LAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQM-------NALKAEEDVANI 329 (759)
Q Consensus 271 ~~a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l~e~ae~aq~-------~a~kaeedvani 329 (759)
..++.++++........|.|+..||.|..-|+.+++++++-...|+- .+.+||.+|+++
T Consensus 26 e~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L 91 (101)
T 3u1c_A 26 EQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASL 91 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777777888889999999998888888887766665543 455666666653
No 12
>2l0e_A Sodium/hydrogen exchanger 1; transmembrane helix, membrane protein, NHE1; NMR {Homo sapiens}
Probab=85.08 E-value=0.15 Score=37.72 Aligned_cols=29 Identities=17% Similarity=0.285 Sum_probs=26.0
Q ss_pred ChHHHHHHHHHHhhccHHHHHHHHHHcCC
Q 004361 710 PGPASIVIGNGLALSSTAVVLQVLQERGE 738 (759)
Q Consensus 710 s~~~ALLLGaILSaTSpaVVv~VLkELGL 738 (759)
+|..++++|+++++|+|..+..++++++.
T Consensus 2 ~~~~~llfGAiis~TDpVavlaif~~~~v 30 (33)
T 2l0e_A 2 KKKDNLLFGSIISAVDPVAVLAVFEEIHK 30 (33)
T ss_dssp CCCCCCTTHHHHTTCCHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHccCCChHHHHHHHHHcCC
Confidence 45678899999999999999999999885
No 13
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=72.83 E-value=3.9 Score=30.49 Aligned_cols=27 Identities=19% Similarity=0.281 Sum_probs=23.4
Q ss_pred hhHHHHHHhhhhHHHHHHHHHHHHHHH
Q 004361 286 NCETELRRLQSKKEELQKEVDRLNEVA 312 (759)
Q Consensus 286 ~ce~el~~~q~~k~elqkev~~l~e~a 312 (759)
..|+..+.|-.+|.+|+.||.||.++.
T Consensus 4 QLEdKvEeLl~~~~~Le~EV~RLk~lL 30 (33)
T 3c3g_A 4 XIEXKLXEIXSKXYHXENXLARIKXLL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 357788889999999999999999874
No 14
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=72.21 E-value=16 Score=31.27 Aligned_cols=55 Identities=29% Similarity=0.255 Sum_probs=42.2
Q ss_pred HHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 004361 269 LLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAE 323 (759)
Q Consensus 269 ~~~~a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l~e~ae~aq~~a~kae 323 (759)
-+..++.+.++....+...|.++..||.|..-|+.++++..+-...|+-.-..|+
T Consensus 21 ~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeae 75 (81)
T 1ic2_A 21 RAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELAD 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777888888888888888888888888888888887776544433
No 15
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=72.01 E-value=4.2 Score=30.53 Aligned_cols=27 Identities=30% Similarity=0.428 Sum_probs=23.0
Q ss_pred hhHHHHHHhhhhHHHHHHHHHHHHHHH
Q 004361 286 NCETELRRLQSKKEELQKEVDRLNEVA 312 (759)
Q Consensus 286 ~ce~el~~~q~~k~elqkev~~l~e~a 312 (759)
..|+..+.|-.+|.+|++||.||.++.
T Consensus 5 QLE~kVEeLl~~n~~Le~eV~rLk~ll 31 (34)
T 2oxj_A 5 QLEXKVXELLXKNXHLEXEVXRLKXLV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 456777888999999999999999864
No 16
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=69.98 E-value=4.9 Score=30.12 Aligned_cols=27 Identities=19% Similarity=0.222 Sum_probs=23.3
Q ss_pred hhHHHHHHhhhhHHHHHHHHHHHHHHH
Q 004361 286 NCETELRRLQSKKEELQKEVDRLNEVA 312 (759)
Q Consensus 286 ~ce~el~~~q~~k~elqkev~~l~e~a 312 (759)
..|+..+.|-.+|.+|+.||.||.++.
T Consensus 5 QLEdKVEeLl~~~~~Le~EV~RLk~ll 31 (34)
T 3c3f_A 5 QIEXKLEXILSXLYHXENEXARIXKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 457788889999999999999999864
No 17
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=68.94 E-value=5.3 Score=29.99 Aligned_cols=27 Identities=22% Similarity=0.395 Sum_probs=23.4
Q ss_pred hhHHHHHHhhhhHHHHHHHHHHHHHHH
Q 004361 286 NCETELRRLQSKKEELQKEVDRLNEVA 312 (759)
Q Consensus 286 ~ce~el~~~q~~k~elqkev~~l~e~a 312 (759)
..|+..+.|-.++.+|+.||.||.++.
T Consensus 5 QLEdKvEeLl~~~~~L~~EV~RLk~lL 31 (34)
T 2bni_A 5 QIEDKLEEILSKGHHICNELARIKKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 457788899999999999999998863
No 18
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=67.33 E-value=6 Score=29.54 Aligned_cols=26 Identities=35% Similarity=0.482 Sum_probs=22.4
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHHHHH
Q 004361 287 CETELRRLQSKKEELQKEVDRLNEVA 312 (759)
Q Consensus 287 ce~el~~~q~~k~elqkev~~l~e~a 312 (759)
.|+..+.|-.++.+|+.||.||.++.
T Consensus 5 LE~kVEeLl~~n~~Le~EV~RLk~Ll 30 (33)
T 3m48_A 5 LEAKVEELLSKNWNLENEVARLKKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 56777888999999999999999863
No 19
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=67.15 E-value=6.3 Score=34.01 Aligned_cols=53 Identities=21% Similarity=0.225 Sum_probs=28.7
Q ss_pred CcccccCCCCcchhhHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHH
Q 004361 254 STEDDAKSDGKEEDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRL 308 (759)
Q Consensus 254 s~~~~~~~d~~~~~~~~~~a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l 308 (759)
|.|++|. +++=+.++....+||+.-++-+...|.+|...-..+.+||.|.|++
T Consensus 14 ~~~~mgt--i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 14 SIEGRGS--LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp -----CH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hcccCCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555554 4444555555566666666666666666666666666666666655
No 20
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=66.74 E-value=6.3 Score=29.40 Aligned_cols=27 Identities=19% Similarity=0.188 Sum_probs=23.3
Q ss_pred hhHHHHHHhhhhHHHHHHHHHHHHHHH
Q 004361 286 NCETELRRLQSKKEELQKEVDRLNEVA 312 (759)
Q Consensus 286 ~ce~el~~~q~~k~elqkev~~l~e~a 312 (759)
..|+..+.+-.+|.+|+.||.||.++.
T Consensus 4 QLEdKVEell~~~~~le~EV~Rl~~ll 30 (33)
T 2wq1_A 4 QLEDKIEENTSKIYHNTNEIARNTKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 357778889999999999999999864
No 21
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=64.94 E-value=11 Score=38.89 Aligned_cols=17 Identities=29% Similarity=0.468 Sum_probs=6.6
Q ss_pred HHHHHhhHHHHHHhhhh
Q 004361 281 QANLANCETELRRLQSK 297 (759)
Q Consensus 281 q~~l~~ce~el~~~q~~ 297 (759)
++++...+++++.++.+
T Consensus 121 ~~~~~~a~a~~~~~~~~ 137 (369)
T 4dk0_A 121 KATLNNAKAEMDVVQEN 137 (369)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333444443333
No 22
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=64.62 E-value=7.2 Score=29.61 Aligned_cols=28 Identities=29% Similarity=0.403 Sum_probs=24.1
Q ss_pred hhHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 004361 286 NCETELRRLQSKKEELQKEVDRLNEVAE 313 (759)
Q Consensus 286 ~ce~el~~~q~~k~elqkev~~l~e~ae 313 (759)
..|+..+.|-.+|.+|+.||.||.++..
T Consensus 5 QLE~kVEeLl~~~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 5 QLEAEVEEIESEVWHLENEVARLEKENA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 3577888999999999999999998754
No 23
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=63.83 E-value=7.7 Score=29.15 Aligned_cols=27 Identities=19% Similarity=0.292 Sum_probs=23.0
Q ss_pred hhHHHHHHhhhhHHHHHHHHHHHHHHH
Q 004361 286 NCETELRRLQSKKEELQKEVDRLNEVA 312 (759)
Q Consensus 286 ~ce~el~~~q~~k~elqkev~~l~e~a 312 (759)
..|+..+.|-.++.+|+.||.||.++.
T Consensus 5 QLEdKVEeLl~~n~~Le~EV~RLk~LL 31 (34)
T 1uo4_A 5 QIEDKGEEILSKLYHIENELARIKKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 356777889999999999999999863
No 24
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=63.72 E-value=7.6 Score=29.47 Aligned_cols=28 Identities=25% Similarity=0.347 Sum_probs=23.9
Q ss_pred hhHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 004361 286 NCETELRRLQSKKEELQKEVDRLNEVAE 313 (759)
Q Consensus 286 ~ce~el~~~q~~k~elqkev~~l~e~ae 313 (759)
..|+..+.|-.++.+|+.||.||.++..
T Consensus 5 QLE~KVEeLl~~~~~Le~eV~RLk~ll~ 32 (36)
T 1kd8_B 5 QLKAKVEELKSKLWHLKNKVARLKKKNA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 3567788899999999999999998754
No 25
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=63.12 E-value=9.8 Score=28.59 Aligned_cols=28 Identities=18% Similarity=0.235 Sum_probs=24.3
Q ss_pred HhhHHHHHHhhhhHHHHHHHHHHHHHHH
Q 004361 285 ANCETELRRLQSKKEELQKEVDRLNEVA 312 (759)
Q Consensus 285 ~~ce~el~~~q~~k~elqkev~~l~e~a 312 (759)
...|..++.+-++|.+|++||.||.++.
T Consensus 4 nQledKvEel~~~~~~l~nEv~Rl~~lL 31 (34)
T 2r2v_A 4 KQVADKLEEVASKLYHNANELARVAKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 3467888999999999999999999875
No 26
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=56.48 E-value=12 Score=28.04 Aligned_cols=27 Identities=22% Similarity=0.290 Sum_probs=22.7
Q ss_pred hhHHHHHHhhhhHHHHHHHHHHHHHHH
Q 004361 286 NCETELRRLQSKKEELQKEVDRLNEVA 312 (759)
Q Consensus 286 ~ce~el~~~q~~k~elqkev~~l~e~a 312 (759)
..|+..+.|-.+|.+|+.||.||.++.
T Consensus 5 QLEdkVEeLl~~~~~Le~eV~RL~~ll 31 (34)
T 2hy6_A 5 QLADAVEELASANYHLANAVARLAKAV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 346677888899999999999999864
No 27
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=55.13 E-value=21 Score=36.64 Aligned_cols=31 Identities=10% Similarity=0.254 Sum_probs=14.8
Q ss_pred HHHHhhhHHHHHHHHHhhHHHHHHhhhhHHH
Q 004361 270 LLAAENDIKECQANLANCETELRRLQSKKEE 300 (759)
Q Consensus 270 ~~~a~~di~~~q~~l~~ce~el~~~q~~k~e 300 (759)
++.++.+....++.+...+++|+.++...+.
T Consensus 117 ~~~a~~~~~~a~a~~~~~~~~l~~~~~~l~~ 147 (369)
T 4dk0_A 117 LNTAKATLNNAKAEMDVVQENIKQAEIEVNT 147 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444445555555555555554443333
No 28
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=53.27 E-value=1.2e+02 Score=29.29 Aligned_cols=98 Identities=23% Similarity=0.286 Sum_probs=0.0
Q ss_pred hhHHHHHhhhHHHHHHHHHhhHH---HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH-----------------
Q 004361 267 DGLLLAAENDIKECQANLANCET---ELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDV----------------- 326 (759)
Q Consensus 267 ~~~~~~a~~di~~~q~~l~~ce~---el~~~q~~k~elqkev~~l~e~ae~aq~~a~kaeedv----------------- 326 (759)
|..|..++.++...+.....+|. +++++..++.....|..+|.+.....+-.-..||...
T Consensus 19 eD~L~~~R~el~~~~~ri~~lE~~r~~~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeE 98 (154)
T 2ocy_A 19 EEQLNKSLKTIASQKAAIENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDE 98 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHh-----hhcccHHHHHHHHHHhhcCC
Q 004361 327 ANIMLLAEQAVAFEIEAT-----QRVNDAEIALQRAEKSLSNS 364 (759)
Q Consensus 327 anim~laeqava~e~ea~-----q~~ndaeial~ka~k~~~~~ 364 (759)
||=|+.++.--+..+|-- .+..|++.-|..-...+..+
T Consensus 99 AN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~L 141 (154)
T 2ocy_A 99 ANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNL 141 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 29
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=52.26 E-value=23 Score=32.74 Aligned_cols=40 Identities=20% Similarity=0.281 Sum_probs=28.0
Q ss_pred hhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 004361 275 NDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEK 314 (759)
Q Consensus 275 ~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l~e~ae~ 314 (759)
.+|.+.+++|..||.-|..-|...++|+.|+.++++-.|+
T Consensus 24 ~ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~ 63 (110)
T 2v4h_A 24 MQLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMET 63 (110)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666677777777777777777777777777776665553
No 30
>2yxy_A Hypothetical conserved protein, GK0453; alpha and beta proteins (A+B) class, structural GENO unknown function, NPPSFA; 2.20A {Geobacillus kaustophilus}
Probab=52.14 E-value=12 Score=34.77 Aligned_cols=30 Identities=43% Similarity=0.468 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 004361 297 KKEELQKEVDRLNEVAEKAQMNALKAEEDV 326 (759)
Q Consensus 297 ~k~elqkev~~l~e~ae~aq~~a~kaeedv 326 (759)
-+.|||.|+.+|+|+|.||++.----|-+|
T Consensus 15 S~~EL~~EI~~L~ekarKAEq~G~~nE~aV 44 (115)
T 2yxy_A 15 TKEELQQEIAMLTEKARKAEQMGMVNEYAV 44 (115)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCccHHHH
Confidence 368999999999999999987765444443
No 31
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=50.40 E-value=1.2e+02 Score=25.83 Aligned_cols=59 Identities=12% Similarity=0.152 Sum_probs=36.2
Q ss_pred HHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 004361 272 AAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVANIM 330 (759)
Q Consensus 272 ~a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l~e~ae~aq~~a~kaeedvanim 330 (759)
.-+.|....+..+..|+.+|+....+.+.+-.||.-|+-+-...+.+..++++.+.-..
T Consensus 10 ~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~ 68 (81)
T 1ic2_A 10 MLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQ 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666666666666666666666666666666666666654433
No 32
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=49.46 E-value=2.5e+02 Score=29.90 Aligned_cols=24 Identities=38% Similarity=0.385 Sum_probs=14.1
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHH
Q 004361 290 ELRRLQSKKEELQKEVDRLNEVAE 313 (759)
Q Consensus 290 el~~~q~~k~elqkev~~l~e~ae 313 (759)
+..+-|.|++||..||-+||...+
T Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~ 460 (471)
T 3mq9_A 437 EKAQGQKKVEELEGEITTLNHKLQ 460 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445566666666666665543
No 33
>1sf9_A YFHH hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative, midwest center for structural genomics; 1.71A {Bacillus subtilis} SCOP: b.34.15.1
Probab=49.44 E-value=12 Score=35.21 Aligned_cols=32 Identities=34% Similarity=0.373 Sum_probs=25.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 004361 295 QSKKEELQKEVDRLNEVAEKAQMNALKAEEDV 326 (759)
Q Consensus 295 q~~k~elqkev~~l~e~ae~aq~~a~kaeedv 326 (759)
|=-+.|||.|+.+|+|+|.||++.----|-+|
T Consensus 31 eMS~~EL~~EI~~L~EKaRKAEq~Gi~NE~aV 62 (128)
T 1sf9_A 31 QMTPHELNTEIALLSEKARKAEQHGIINELAV 62 (128)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCHHHHHHHHHHHHHHHHHHHHcCCccHHHH
Confidence 33578999999999999999988765544444
No 34
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=47.28 E-value=90 Score=30.76 Aligned_cols=17 Identities=24% Similarity=0.255 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHhhh
Q 004361 227 LSLAEARLQVAIESLQD 243 (759)
Q Consensus 227 lslaearlq~a~e~~~~ 243 (759)
+..|+++++.|..-++.
T Consensus 69 l~~a~a~l~~a~~~~~r 85 (277)
T 2f1m_A 69 LAKAQAAANIAQLTVNR 85 (277)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444443
No 35
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=47.09 E-value=34 Score=31.65 Aligned_cols=47 Identities=13% Similarity=0.175 Sum_probs=27.6
Q ss_pred hhhHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 004361 266 EDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEK 314 (759)
Q Consensus 266 ~~~~~~~a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l~e~ae~ 314 (759)
-|++|..-|.||.+.+..++.++..|++++-= +-|-+|=+=+=.||+
T Consensus 36 AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vL--kaQv~IY~~DF~aER 82 (110)
T 2v4h_A 36 AEEALVAKQELIDKLKEEAEQHKIVMETVPVL--KAQADIYKADFQAER 82 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHccch
Confidence 46777777777777777777777766655432 234444333333443
No 36
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=46.78 E-value=20 Score=36.49 Aligned_cols=15 Identities=27% Similarity=0.233 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHH
Q 004361 223 ATMALSLAEARLQVA 237 (759)
Q Consensus 223 atmalslaearlq~a 237 (759)
|...+.+|+..++..
T Consensus 88 a~~~~~~a~~~~~r~ 102 (341)
T 3fpp_A 88 AEAELKLARVTYSRQ 102 (341)
T ss_dssp HHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444443
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=45.75 E-value=2.2e+02 Score=31.03 Aligned_cols=29 Identities=10% Similarity=0.137 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 004361 301 LQKEVDRLNEVAEKAQMNALKAEEDVANI 329 (759)
Q Consensus 301 lqkev~~l~e~ae~aq~~a~kaeedvani 329 (759)
+++|+.++....+..+..-....++.+++
T Consensus 542 ~~~~~~~le~~~~~~~~~~~~l~~e~~~~ 570 (597)
T 3oja_B 542 LEQENIALEKQLDNKRAKQAELRQETSLK 570 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 33677777766666655554444444443
No 38
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=44.33 E-value=41 Score=38.15 Aligned_cols=24 Identities=17% Similarity=0.422 Sum_probs=14.1
Q ss_pred hhhHHHHhhhcchhhhhhHHHhhhh
Q 004361 449 KEAEVEAEKSKNVIQTKKQEMQKDL 473 (759)
Q Consensus 449 k~~e~~~~~~k~~~q~kkqe~~~~~ 473 (759)
++--..++|+|. +|.+=+++..++
T Consensus 504 ~eR~~~~ekn~~-lq~qL~~L~~el 527 (575)
T 2i1j_A 504 ADRRTLAERNER-LHNQLKALKQDL 527 (575)
T ss_dssp GGCCCHHHHCHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHhhHH-HHHHHHHHHHHH
Confidence 444556677765 666666655544
No 39
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=42.01 E-value=90 Score=27.51 Aligned_cols=47 Identities=17% Similarity=0.273 Sum_probs=33.0
Q ss_pred hHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 004361 268 GLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEK 314 (759)
Q Consensus 268 ~~~~~a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l~e~ae~ 314 (759)
.|-.+-++++...++.+.+.+.+|+.-..+-.+|+.|+.+|.+..+-
T Consensus 24 qAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 24 LTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445556666666777777777887778888888888777776554
No 40
>3v5u_A Uncharacterized membrane protein MJ0091; lipid cubic phase, cation protein complex, sodium,calcium EX membrane protein; HET: OLC MYS 1PE; 1.90A {Methanocaldococcus jannaschii} PDB: 3v5s_A*
Probab=41.96 E-value=2.6e+02 Score=29.40 Aligned_cols=43 Identities=21% Similarity=0.394 Sum_probs=25.9
Q ss_pred hHHHHHHHHhhhhhhhcchHHhhhhcccCCccc--------cchhhhhhcc
Q 004361 527 KLVLGFLLFGAGVAFYANQAERSSLQLQQPDVI--------TTSIEEASSN 569 (759)
Q Consensus 527 klv~g~~l~gag~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~s~ 569 (759)
-+++|++++..|.-++-+.++.-+.-+.-|+.+ .||.||+..+
T Consensus 8 ~l~~g~~~l~~~a~~lv~~~~~la~~lgis~~viGltiva~GTSlPEl~vs 58 (320)
T 3v5u_A 8 YFLLGLILLYYGSDWFVLGSERIARHFNVSNFVIGATVMAIGTSLPEILTS 58 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTBCHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHcccHHHHHH
Confidence 467777777777677777777555544433321 3566666543
No 41
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=41.27 E-value=73 Score=30.03 Aligned_cols=43 Identities=19% Similarity=0.342 Sum_probs=35.1
Q ss_pred hhHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHH
Q 004361 267 DGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLN 309 (759)
Q Consensus 267 ~~~~~~a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l~ 309 (759)
++.+..-+.|+...|..+.+-..++..++.++.+||+++-+|.
T Consensus 88 ~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 88 DKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667778888888888888888888888888888888884
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=40.50 E-value=3.9e+02 Score=29.08 Aligned_cols=26 Identities=23% Similarity=0.262 Sum_probs=11.4
Q ss_pred HHHhhHHHHHHhhhhHHHHHHHHHHH
Q 004361 283 NLANCETELRRLQSKKEELQKEVDRL 308 (759)
Q Consensus 283 ~l~~ce~el~~~q~~k~elqkev~~l 308 (759)
...++|.+++..+.+..|+++|...+
T Consensus 545 ~~~~le~~~~~~~~~~~~l~~e~~~~ 570 (597)
T 3oja_B 545 ENIALEKQLDNKRAKQAELRQETSLK 570 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 33344444444444444444444443
No 43
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=39.48 E-value=2e+02 Score=26.04 Aligned_cols=28 Identities=18% Similarity=0.311 Sum_probs=20.4
Q ss_pred HHHHHhhhHHHHHHHHHhhHHHHHHhhh
Q 004361 269 LLLAAENDIKECQANLANCETELRRLQS 296 (759)
Q Consensus 269 ~~~~a~~di~~~q~~l~~ce~el~~~q~ 296 (759)
.+..++++|+..+..++.-+.|+.+|+.
T Consensus 6 ~~e~lre~l~~le~~~~~~~~e~~~L~~ 33 (97)
T 2eqb_B 6 NYNQLKEDYNTLKRELSDRDDEVKRLRE 33 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3567777888777777777777777763
No 44
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=37.92 E-value=1.1e+02 Score=32.59 Aligned_cols=90 Identities=17% Similarity=0.167 Sum_probs=56.0
Q ss_pred hhhHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 004361 266 EDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVANIMLLAEQAVAFEIEATQ 345 (759)
Q Consensus 266 ~~~~~~~a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l~e~ae~aq~~a~kaeedvanim~laeqava~e~ea~q 345 (759)
-++++..++++|.+. |.+--++. +....-.+||+++++++..-.+++-.|.-+---|-.+|-.-|.-|+--. +
T Consensus 371 ~eeal~~~~~~i~~~---l~~~~~~~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 443 (471)
T 3mq9_A 371 VDEALKDAQTRITAA---RDGLRAVM-EARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQ---K 443 (471)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
T ss_pred HHHHHHHHHHHHHHH---HHhhHHHH-HhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHH---H
Confidence 457777777776654 22222222 2335556788888888888888888888888888888877776666522 4
Q ss_pred hcccHHHHHHHHHHhhc
Q 004361 346 RVNDAEIALQRAEKSLS 362 (759)
Q Consensus 346 ~~ndaeial~ka~k~~~ 362 (759)
|+..-|.-+.+-+..|.
T Consensus 444 ~~~~~~~~~~~~~~~~~ 460 (471)
T 3mq9_A 444 KVEELEGEITTLNHKLQ 460 (471)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555554444444333
No 45
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=37.46 E-value=6.5e+02 Score=30.75 Aligned_cols=16 Identities=31% Similarity=0.490 Sum_probs=6.3
Q ss_pred hhhhHHHHHHHHHHHH
Q 004361 294 LQSKKEELQKEVDRLN 309 (759)
Q Consensus 294 ~q~~k~elqkev~~l~ 309 (759)
|+..+..|+.+++.|+
T Consensus 1028 L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1028 LKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333344444
No 46
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=37.12 E-value=73 Score=26.74 Aligned_cols=40 Identities=28% Similarity=0.313 Sum_probs=27.0
Q ss_pred HHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHH
Q 004361 269 LLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRL 308 (759)
Q Consensus 269 ~~~~a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l 308 (759)
||.++..-|...----.+.-.|||.+|.+.-+||.|-..|
T Consensus 21 ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~L 60 (63)
T 2w6a_A 21 ALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhh
Confidence 4444444554443344566679999999999999886655
No 47
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=36.65 E-value=1.9e+02 Score=26.53 Aligned_cols=62 Identities=19% Similarity=0.238 Sum_probs=49.6
Q ss_pred hhHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 004361 267 DGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVAN 328 (759)
Q Consensus 267 ~~~~~~a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l~e~ae~aq~~a~kaeedvan 328 (759)
++.+..-.++|+.++..|...+.....+..+...|-.|...|+.-.+.-+.....||+-...
T Consensus 12 e~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~ 73 (129)
T 2fxo_A 12 EKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQ 73 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 45666778888899999998888888888888888888888888777777777777776654
No 48
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=36.46 E-value=53 Score=28.21 Aligned_cols=43 Identities=21% Similarity=0.343 Sum_probs=37.7
Q ss_pred hhhHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHH
Q 004361 266 EDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRL 308 (759)
Q Consensus 266 ~~~~~~~a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l 308 (759)
+-..|..|.+=|+.-|..-..+..|.++|+.+.++|++++..|
T Consensus 38 k~~iL~kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~~l 80 (80)
T 1nlw_A 38 TLSLLTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLEKL 80 (80)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4588999999999999999999999999999999999887654
No 49
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=36.16 E-value=3.5e+02 Score=27.15 Aligned_cols=44 Identities=11% Similarity=0.129 Sum_probs=29.6
Q ss_pred HHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 004361 270 LLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAE 313 (759)
Q Consensus 270 ~~~a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l~e~ae 313 (759)
+.+-+.+|...+.....+|.++.++..+.+++++++..+.+..+
T Consensus 92 ~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~ 135 (256)
T 3na7_A 92 LRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEML 135 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344666666677777777777777777777777776665544
No 50
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=35.99 E-value=38 Score=38.38 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=13.2
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHH
Q 004361 164 LEVAQLNSTMFEEKAQRISEAAI 186 (759)
Q Consensus 164 le~a~~ns~~fe~kaq~ise~ai 186 (759)
.|+-+...-+=|+|++|-.|.+-
T Consensus 300 ~e~qqm~~~a~e~~~~~~~e~~~ 322 (575)
T 2i1j_A 300 IDVQQMKAQAREEKLAKQAQREK 322 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555666666666554
No 51
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=35.69 E-value=1.1e+02 Score=26.94 Aligned_cols=37 Identities=27% Similarity=0.291 Sum_probs=21.5
Q ss_pred hHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHH
Q 004361 268 GLLLAAENDIKECQANLANCETELRRLQSKKEELQKE 304 (759)
Q Consensus 268 ~~~~~a~~di~~~q~~l~~ce~el~~~q~~k~elqke 304 (759)
.+....+-+.+|.+..-.+.+.|+++++.+.+|||.+
T Consensus 38 ~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq~~ 74 (81)
T 1wt6_A 38 TDNQNFASQLREAEARNRDLEAHVRQLQERMELLQAE 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4445555566666666666666666666666666544
No 52
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=34.39 E-value=89 Score=26.97 Aligned_cols=37 Identities=27% Similarity=0.391 Sum_probs=31.5
Q ss_pred HHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 004361 277 IKECQANLANCETELRRLQSKKEELQKEVDRLNEVAE 313 (759)
Q Consensus 277 i~~~q~~l~~ce~el~~~q~~k~elqkev~~l~e~ae 313 (759)
|++.|..|-.-.+||+..+.++.+|+++++..++.-.
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~ 57 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQ 57 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999999999999999998887765443
No 53
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=33.90 E-value=1.4e+02 Score=27.94 Aligned_cols=65 Identities=31% Similarity=0.324 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCCCCCCcccccCCCCcchhhHHHH-HhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHH
Q 004361 226 ALSLAEARLQVAIESLQDVKQEDDYPEGSTEDDAKSDGKEEDGLLLA-AENDIKECQANLANCETELRRLQSKKEELQKE 304 (759)
Q Consensus 226 alslaearlq~a~e~~~~~~~~~~~~~~s~~~~~~~d~~~~~~~~~~-a~~di~~~q~~l~~ce~el~~~q~~k~elqke 304 (759)
.-.+-|.+|..|.|+|..+ |+... --.-+....+.| +.+-.+-|.+..|||.|
T Consensus 26 ~T~lLq~qLTqAQe~l~~~-----------------------eaQAaTCNqTV~tL~~SL---~~ekaq~q~~vqeLqgE 79 (121)
T 3mq7_A 26 VTHLLQQELTEAQKGFQDV-----------------------EAQAATANHTVMALMASL---DAEKAQGQKKVEELEGE 79 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 3356688888888888763 22211 112222233333 33444458889999999
Q ss_pred HHHHHHHHHHHH
Q 004361 305 VDRLNEVAEKAQ 316 (759)
Q Consensus 305 v~~l~e~ae~aq 316 (759)
+-+||.....|.
T Consensus 80 I~~Lnq~Lq~a~ 91 (121)
T 3mq7_A 80 ITTLNHKLQDAS 91 (121)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999776654
No 54
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=33.65 E-value=1.7e+02 Score=23.01 Aligned_cols=43 Identities=7% Similarity=0.048 Sum_probs=35.3
Q ss_pred hhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 004361 275 NDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQM 317 (759)
Q Consensus 275 ~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l~e~ae~aq~ 317 (759)
+.+..++..+.+|+.+.+.+..+..+++.+++++.+--.++.-
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~ 47 (60)
T 3htk_A 5 NTKKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRD 47 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888999999999999999999999999887776665543
No 55
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=33.14 E-value=1.3e+02 Score=30.67 Aligned_cols=18 Identities=28% Similarity=0.348 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004361 220 VHKATMALSLAEARLQVA 237 (759)
Q Consensus 220 v~~atmalslaearlq~a 237 (759)
++.|...+..|+..++..
T Consensus 100 l~~a~a~l~~a~~~~~r~ 117 (359)
T 3lnn_A 100 AAKARAAMTMARRNLDRQ 117 (359)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444555544443
No 56
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=33.12 E-value=6e+02 Score=29.03 Aligned_cols=85 Identities=19% Similarity=0.135 Sum_probs=41.5
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhchhHHHHHHHhhhHhHHHHHHHHhHHHHHHHHHHHHHH
Q 004361 146 EPPTTDELRELLMNAMKELEVAQLNSTMFEEKAQRISEAAIALKDEAANAWNNVNVTLDMVHEIVNEECIAKEAVHKATM 225 (759)
Q Consensus 146 ~~~~~~~l~e~l~~a~~ele~a~~ns~~fe~kaq~ise~ai~l~d~a~~a~~~v~~~l~~iq~~~~~e~~akeav~~atm 225 (759)
+..+.++|+.-.+-..|....+..+-. +|+|.|=-|.|-+ -.+.+++.++++||... .+-...+-++|
T Consensus 289 ~ilt~~elkqrqeee~r~~qew~~~hp--~~~Aer~~e~a~a-------el~~a~k~~a~~~er~~---~t~~~~~~~~~ 356 (551)
T 2b5u_A 289 DVLSPDQVKQRQDEENRRQQEWDATHP--VEAAERNYERARA-------ELNQANEDVARNQERQA---KAVQVYNSRKS 356 (551)
T ss_dssp ECCCHHHHHHHHHHHHHHHHHHHHHCH--HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred ecCCHHHHHHHHHHHHHHHHHhhhcCc--HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH---HHHHHHHhhHH
Confidence 466778887555444443333333322 2222222222211 11233566667776332 55566666777
Q ss_pred HHHHHHHHHHHHHHHhh
Q 004361 226 ALSLAEARLQVAIESLQ 242 (759)
Q Consensus 226 alslaearlq~a~e~~~ 242 (759)
+|..|--.+-.|+-+.+
T Consensus 357 ~~~~~n~~~~~~~~~~~ 373 (551)
T 2b5u_A 357 ELDAANKTLADAIAEIK 373 (551)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHhhh
Confidence 77665555555544433
No 57
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=32.89 E-value=3.8e+02 Score=26.61 Aligned_cols=59 Identities=19% Similarity=0.210 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhccccc------ccccch--hhHHHHHHHHHHHHHHHHhhc
Q 004361 604 FDVLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGL------SIIRHV--HGTKAIAEFGVVFLLFNIGLE 671 (759)
Q Consensus 604 lqL~LILlaA~LLg~LlrRL~gLP~VVGyILAGIILGPsgL------GlI~~~--eiLe~LAEIGLIfLLFlaGLE 671 (759)
+|...+++++.++++-..-+ .++.|++.|++==|.+- +.+-.+ .++ +|+++--|.+|+=
T Consensus 50 lQtl~V~LaG~~LG~r~G~l----sv~lYlllG~~GlPVFagg~gG~~~l~gPTgGYL-----iGF~~aA~v~G~l 116 (198)
T 4dve_A 50 LQNMGIMMAGGLLGPKYGTI----SVGAFLALALIGLPVLTGGNGGAASFLGPSGGYR-----IAWLFTPFLIGFF 116 (198)
T ss_dssp STHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHTCCCBTTTBCCSGGGGSTTHHHH-----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHChhHHHH----HHHHHHHHHHHcCccccCCCCchhHHhcchhHHH-----HHHHHHHHHHHHH
Confidence 56666777777777644333 67779999987555432 222111 223 6777777888863
No 58
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=32.55 E-value=46 Score=34.61 Aligned_cols=42 Identities=24% Similarity=0.241 Sum_probs=26.1
Q ss_pred hHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHH
Q 004361 268 GLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLN 309 (759)
Q Consensus 268 ~~~~~a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l~ 309 (759)
+-+...+.++...+++...+.++|++++.+...|++|+++|.
T Consensus 54 ~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 54 RDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334445556666666666666666666666666666666664
No 59
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=32.27 E-value=1.2e+02 Score=24.51 Aligned_cols=39 Identities=13% Similarity=0.222 Sum_probs=20.7
Q ss_pred HHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004361 284 LANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKA 322 (759)
Q Consensus 284 l~~ce~el~~~q~~k~elqkev~~l~e~ae~aq~~a~ka 322 (759)
+.+...+...|-.|...|+.+|+-|.--...|+..|..|
T Consensus 6 i~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RA 44 (52)
T 1jcd_A 6 ADQASSDAQTANAKADQASNDANAARSDAQAAKDDAARA 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555666666666666665555444444444443
No 60
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=32.12 E-value=1.3e+02 Score=26.67 Aligned_cols=46 Identities=33% Similarity=0.354 Sum_probs=29.1
Q ss_pred HHhhhHHHHHHHHHhhHH---HHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 004361 272 AAENDIKECQANLANCET---ELRRLQSKKEELQKEVDRLNEVAEKAQM 317 (759)
Q Consensus 272 ~a~~di~~~q~~l~~ce~---el~~~q~~k~elqkev~~l~e~ae~aq~ 317 (759)
.|.+--+.....|.+-+. ++..++..+..|+++..+|.++|+.+|-
T Consensus 33 lAE~RR~AL~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae~~q~ 81 (83)
T 1uii_A 33 VAEKRRKALYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQY 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444443332 5566667777788888999999998884
No 61
>2rq6_A ATP synthase epsilon chain; F1FO ATP synthase, F1-ATPase, epsilon subunit, ATP synthesis, CF1, hydrogen ION transport, hydrolase; NMR {Thermosynechococcus elongatus} PDB: 2rq7_A
Probab=31.64 E-value=62 Score=30.20 Aligned_cols=78 Identities=12% Similarity=0.034 Sum_probs=43.9
Q ss_pred cccccccCCCccccccccccCCCCCCcccCCCcceeecCCCccccccCCCCCccccccchhhhcccccCCCCCcHHHHHH
Q 004361 77 LWGLYTCKSLFCSFDDFSKLSRGVCPTCQGNDSLAFIDGNGRNVEFSENGDGPEANSLGEEERETKEDAEPPTTDELREL 156 (759)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~cq~~dsl~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~ 156 (759)
.||.|+.|-+++.....+. .+++..|.....||. |-++|..++ .++ -.-++-+-.+.-+++..++.
T Consensus 30 e~GILp~H~p~it~L~~G~----v~i~~~~~~~~~~v~--gGf~ev~~~----~vt----Ila~~A~~~~dID~~~a~~a 95 (138)
T 2rq6_A 30 QLGILSNHAPLLTALETGV----MRVRQDREWVAIALM--GGFAEVENN----EVT----ILVNGAERGDTIDLEKAKAE 95 (138)
T ss_dssp CEEEESSCCSEEEEECSEE----EEEESSSCEEEEEEC--SEEEEECSS----CEE----EEESCEECSTTCCHHHHHHH
T ss_pred CeEEcCCCcceEeEeccEE----EEEEECCeEEEEEEc--CcEEEEECC----EEE----EEEeeEEEhhhCCHHHHHHH
Confidence 4899999999777533221 112233433444454 346664422 222 11122223345678899999
Q ss_pred HHHHHHHHHHHh
Q 004361 157 LMNAMKELEVAQ 168 (759)
Q Consensus 157 l~~a~~ele~a~ 168 (759)
+++|.+.|..++
T Consensus 96 ~~~Ae~~l~~~~ 107 (138)
T 2rq6_A 96 FAAAQAALAQAE 107 (138)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhCc
Confidence 999998887665
No 62
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=31.03 E-value=52 Score=28.99 Aligned_cols=59 Identities=25% Similarity=0.286 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-hhhHH---HHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHH
Q 004361 297 KKEELQKEVDRLNEVAEKAQMNA-LKAEE---DVANIMLLAEQAVAFEIEATQRVNDAEIALQRAEK 359 (759)
Q Consensus 297 ~k~elqkev~~l~e~ae~aq~~a-~kaee---dvanim~laeqava~e~ea~q~~ndaeial~ka~k 359 (759)
..+||++||.||+-+|-.+.|+= .-+|+ +...||.+|+++.. |-+..+.+.-.|..+++
T Consensus 16 di~eLkkevkKL~~~A~q~kmdLHDLaEdLP~~w~~i~~vA~~tyd----a~~~l~~ak~~L~~~e~ 78 (81)
T 3csx_A 16 AVADLKKKVRKLNSKAGQMKMDLHDLAEGLPTDYENLVETAEKTYE----IFRELDQLKKKLNIWEE 78 (81)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHH----HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHh
Confidence 35678999999999999998874 34454 34678999888753 34444445555555543
No 63
>1wdg_A E2 glycoprotein; MHV, coronavirus, heptad repeat, fusion core, viral entry, V protein; 2.06A {Murine hepatitis virus} SCOP: h.3.3.1 PDB: 1wdf_A
Probab=30.98 E-value=74 Score=28.43 Aligned_cols=30 Identities=17% Similarity=0.287 Sum_probs=23.6
Q ss_pred hchhHHHHHHHhhhHhHHHHHHHHhHHHHH
Q 004361 187 ALKDEAANAWNNVNVTLDMVHEIVNEECIA 216 (759)
Q Consensus 187 ~l~d~a~~a~~~v~~~l~~iq~~~~~e~~a 216 (759)
..-+.-+.+...|+++|..||++||+-..|
T Consensus 11 kAignIq~aF~avn~AL~KIQdVVN~Qg~A 40 (94)
T 1wdg_A 11 NALGAIQDGFDATNSALGKIQSVVNANAEA 40 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566788889999999999999976543
No 64
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=30.02 E-value=53 Score=26.55 Aligned_cols=34 Identities=29% Similarity=0.395 Sum_probs=26.3
Q ss_pred HHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHH
Q 004361 278 KECQANLANCETELRRLQSKKEELQKEVDRLNEV 311 (759)
Q Consensus 278 ~~~q~~l~~ce~el~~~q~~k~elqkev~~l~e~ 311 (759)
.+.-+-|.....+++++.....+|++++.+|++.
T Consensus 23 ~EVD~FLd~v~~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 23 DEVNEFLAQVRKDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556778889999999999999999999998763
No 65
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=29.17 E-value=2.3e+02 Score=24.51 Aligned_cols=46 Identities=13% Similarity=0.193 Sum_probs=38.4
Q ss_pred hhhHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHH
Q 004361 266 EDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEV 311 (759)
Q Consensus 266 ~~~~~~~a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l~e~ 311 (759)
.++.+..-.++++.++.+|...+.....+..+...|-.|.+.|..-
T Consensus 12 ~eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q 57 (89)
T 3bas_A 12 QEEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS 57 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577777888999999999999988888888888888888887765
No 66
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=29.16 E-value=78 Score=28.12 Aligned_cols=52 Identities=13% Similarity=0.366 Sum_probs=40.6
Q ss_pred hhhHHHHHhhhHHHHHHHHHhhHHHHHHh--------hhhHHHHHHHHHHHHHHHHHHHH
Q 004361 266 EDGLLLAAENDIKECQANLANCETELRRL--------QSKKEELQKEVDRLNEVAEKAQM 317 (759)
Q Consensus 266 ~~~~~~~a~~di~~~q~~l~~ce~el~~~--------q~~k~elqkev~~l~e~ae~aq~ 317 (759)
.-.++..++.++.||+.-|..|+.|++.+ +.|..+-++++++|..-..+++.
T Consensus 36 rk~~i~~ie~~l~EA~ell~qMelE~r~~p~~~R~~~~~klr~Yk~dL~~lk~elk~~~~ 95 (102)
T 1vcs_A 36 KKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKRSRI 95 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHHHTHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45678899999999999999999998765 46777777777777665555443
No 67
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=28.89 E-value=1.5e+02 Score=30.02 Aligned_cols=37 Identities=8% Similarity=0.251 Sum_probs=20.5
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004361 202 TLDMVHEIVNEECIAKEAVHKATMALSLAEARLQVAI 238 (759)
Q Consensus 202 ~l~~iq~~~~~e~~akeav~~atmalslaearlq~a~ 238 (759)
.++..+....+....+..+..+...+..++++++.+.
T Consensus 98 ~~~r~~~L~~~~~~s~~~~~~a~~~~~~~~a~l~~~~ 134 (341)
T 3fpp_A 98 TYSRQQRLAQTQAVSQQDLDNAATEMAVKQAQIGTID 134 (341)
T ss_dssp HHHHHHHHHHTSSSTTHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555566666666666666665554443
No 68
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=28.83 E-value=73 Score=26.96 Aligned_cols=45 Identities=16% Similarity=0.206 Sum_probs=37.4
Q ss_pred cchhhHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHH
Q 004361 264 KEEDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRL 308 (759)
Q Consensus 264 ~~~~~~~~~a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l 308 (759)
..+-..|..|.+=|+.-|.....++.|+.+|..+.++|+.++..|
T Consensus 36 ~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 36 ASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346789999999999999988888888888888888888777654
No 69
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=28.56 E-value=1.2e+02 Score=31.56 Aligned_cols=61 Identities=16% Similarity=0.123 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhchhHHHHHHHhhhHhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 004361 151 DELRELLMNAMKELEVAQLNSTMFEEKAQRISEAAIALKDEAANAWNNVNVTLDMVHEIVNEECIAKEAVHKATMALSLA 230 (759)
Q Consensus 151 ~~l~e~l~~a~~ele~a~~ns~~fe~kaq~ise~ai~l~d~a~~a~~~v~~~l~~iq~~~~~e~~akeav~~atmalsla 230 (759)
.+++.-|..|+.+|+.|+. .++..+....+....+..+..|...+..|
T Consensus 77 ~~~~~~l~~a~a~l~~a~~--------------------------------~~~R~~~L~~~g~is~~~~~~a~~~~~~a 124 (369)
T 1vf7_A 77 ATYEADYQSAQANLASTQE--------------------------------QAQRYKLLVADQAVSKQQYADANAAYLQS 124 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHH--------------------------------HHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH--------------------------------HHHHHHHHHHCCCcCHHHHHHHHHHHHHH
Confidence 4567777888888877654 12222333344444555566666677777
Q ss_pred HHHHHHHHHHhhh
Q 004361 231 EARLQVAIESLQD 243 (759)
Q Consensus 231 earlq~a~e~~~~ 243 (759)
+++|+.|...|+.
T Consensus 125 ~a~l~~a~~~l~~ 137 (369)
T 1vf7_A 125 KAAVEQARINLRY 137 (369)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhcC
Confidence 7777777776664
No 70
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=27.69 E-value=1.1e+02 Score=36.54 Aligned_cols=16 Identities=0% Similarity=-0.004 Sum_probs=8.6
Q ss_pred HHHHHHHHHhcCCCchH
Q 004361 613 SVIFVPIFQKIPGGSPV 629 (759)
Q Consensus 613 A~LLg~LlrRL~gLP~V 629 (759)
..++...|+.+ +.|-+
T Consensus 885 ~l~L~~~f~s~-~~~l~ 900 (1057)
T 4dx5_A 885 FLCLAALYESW-SIPFS 900 (1057)
T ss_dssp HHHHHHHHTCS-STHHH
T ss_pred HHHHHHHHhhH-HHHHH
Confidence 33445666666 55543
No 71
>2beq_A E2 glycoprotein; viral protein, coiled coil, membrane fusion, viral entry, envelope protein, signal, transmembrane, virulence; 1.6A {Sars coronavirus PUMC03} SCOP: h.3.3.1
Probab=26.60 E-value=62 Score=24.90 Aligned_cols=24 Identities=17% Similarity=0.361 Sum_probs=20.1
Q ss_pred HHHHHhhhHhHHHHHHHHhHHHHH
Q 004361 193 ANAWNNVNVTLDMVHEIVNEECIA 216 (759)
Q Consensus 193 ~~a~~~v~~~l~~iq~~~~~e~~a 216 (759)
..+..-|+++|.-||++||.-..|
T Consensus 5 ~~g~~tv~~AL~KiQ~VVN~q~~a 28 (38)
T 2beq_A 5 QESLTTTSTALGKLQDVVNQNAQA 28 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHH
Confidence 456778999999999999987655
No 72
>2l27_B Peptide agonist; CRF, ECD1, family B1, alpha helical CRF, membrane P peptide binding protein; NMR {Homo sapiens}
Probab=26.52 E-value=31 Score=26.50 Aligned_cols=27 Identities=41% Similarity=0.362 Sum_probs=22.1
Q ss_pred cHHHHHHHHHHHHHH--HHHhhhhhHHHH
Q 004361 150 TDELRELLMNAMKEL--EVAQLNSTMFEE 176 (759)
Q Consensus 150 ~~~l~e~l~~a~~el--e~a~~ns~~fe~ 176 (759)
.+=||++++-|+.|. +.|..|+.+|++
T Consensus 9 FhlLR~m~emar~e~~~qqA~~NR~lld~ 37 (38)
T 2l27_B 9 FNLLREVLEIAKAEQEAEEAAKNRLLLEE 37 (38)
T ss_dssp HHHHHHHHHHHHHGGGTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHhcc
Confidence 567999999888776 568889999985
No 73
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=26.39 E-value=2.9e+02 Score=30.37 Aligned_cols=38 Identities=11% Similarity=0.203 Sum_probs=28.7
Q ss_pred HhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHH
Q 004361 273 AENDIKECQANLANCETELRRLQSKKEELQKEVDRLNE 310 (759)
Q Consensus 273 a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l~e 310 (759)
-.++|..-++.+.+-+.+++.||....++|++++.|..
T Consensus 89 ml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~ 126 (409)
T 1m1j_C 89 IIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQ 126 (409)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHH
Confidence 45667777777888888888888888888877777643
No 74
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=25.90 E-value=3.2e+02 Score=26.21 Aligned_cols=35 Identities=29% Similarity=0.335 Sum_probs=15.5
Q ss_pred hhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHH
Q 004361 274 ENDIKECQANLANCETELRRLQSKKEELQKEVDRL 308 (759)
Q Consensus 274 ~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l 308 (759)
++|.+..|-.|.+-..||.-...-..|-|-+||.|
T Consensus 17 ~~D~~s~~~eleEnqeEL~iVgkML~EEqgKVDQl 51 (167)
T 4gkw_A 17 KQDTESLQKQLEENQEELEIVGNMLREEQGKVDQL 51 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 44444444444444444443333333444444443
No 75
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=25.49 E-value=1.3e+02 Score=28.33 Aligned_cols=40 Identities=23% Similarity=0.400 Sum_probs=23.6
Q ss_pred HhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 004361 273 AENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQ 316 (759)
Q Consensus 273 a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l~e~ae~aq 316 (759)
+|.|...-|+-|.+. ..||.+..|||.+|.+|..-...++
T Consensus 49 ~qsele~k~aeLe~l----eeL~~ki~eL~~kvA~le~e~~~~e 88 (125)
T 2pms_C 49 LQSKLDAKKAKLSKL----EELSDKIDELDAEIAKLEDQLKAAE 88 (125)
T ss_dssp HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555444 4477777777777777665544443
No 76
>2etd_A LEMA protein; bromodomain-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.28A {Thermotoga maritima} SCOP: a.29.9.1
Probab=24.63 E-value=3.5e+02 Score=26.11 Aligned_cols=19 Identities=16% Similarity=0.462 Sum_probs=12.4
Q ss_pred HhchhHHHHHHHhhhHhHH
Q 004361 186 IALKDEAANAWNNVNVTLD 204 (759)
Q Consensus 186 i~l~d~a~~a~~~v~~~l~ 204 (759)
+.++-.+..||.+|...|.
T Consensus 14 ~~l~~~v~~a~s~Id~qL~ 32 (171)
T 2etd_A 14 VSLEQEVQEXYSQIQNQLQ 32 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566667777777766553
No 77
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=24.62 E-value=1.6e+02 Score=26.47 Aligned_cols=46 Identities=15% Similarity=0.216 Sum_probs=36.1
Q ss_pred cchhhHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHH
Q 004361 264 KEEDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLN 309 (759)
Q Consensus 264 ~~~~~~~~~a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l~ 309 (759)
..-++|..--.+-++.++.++.+++.++..++.+...++.++..+.
T Consensus 84 ~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~ 129 (133)
T 1fxk_C 84 KNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELL 129 (133)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456788888888888888888888888888888888887776654
No 78
>2rmf_A Urocortin, HUCN1; CRF ligand, sauvagine, astressin2B, urocortins, urotensins, CRF receptors, amidation, cleavage on PAIR of basic residues, hormone; NMR {Synthetic} SCOP: j.16.1.1
Probab=24.60 E-value=50 Score=25.63 Aligned_cols=27 Identities=33% Similarity=0.334 Sum_probs=20.9
Q ss_pred cHHHHHHHHHHHHHH--HHHhhhhhHHHH
Q 004361 150 TDELRELLMNAMKEL--EVAQLNSTMFEE 176 (759)
Q Consensus 150 ~~~l~e~l~~a~~el--e~a~~ns~~fe~ 176 (759)
.+=||++|+-|+.|. +.|..|+.+|++
T Consensus 11 FHlLR~miemar~e~~~qqA~~NR~~ld~ 39 (40)
T 2rmf_A 11 FHLLRTLLELARTQSQRERAEQNRIIFDS 39 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHhc
Confidence 567999999777665 567889998863
No 79
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=24.39 E-value=61 Score=27.91 Aligned_cols=41 Identities=32% Similarity=0.369 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-hhhHH---HHHHHHHHHHHHH
Q 004361 297 KKEELQKEVDRLNEVAEKAQMNA-LKAEE---DVANIMLLAEQAV 337 (759)
Q Consensus 297 ~k~elqkev~~l~e~ae~aq~~a-~kaee---dvanim~laeqav 337 (759)
..+||++||.||+-+|-.+.|+= .-+|+ +...||.+|+++.
T Consensus 4 di~eLkkevkKL~~~A~q~kmdLHDLaEdLP~~w~~i~~vA~~ty 48 (71)
T 2js5_A 4 GAEELKAKLKKLNAQATALKMDLHDLAEDLPTGWNRIMEVAEKTY 48 (71)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhHHHHHHHHHHHH
Confidence 46789999999999999998874 34443 3457888888765
No 80
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=24.09 E-value=1.5e+02 Score=25.81 Aligned_cols=44 Identities=23% Similarity=0.252 Sum_probs=39.1
Q ss_pred chhhHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHH
Q 004361 265 EEDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRL 308 (759)
Q Consensus 265 ~~~~~~~~a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l 308 (759)
.+-..|..|.+=|+..|.....++.+...|+.+.+.|++++..|
T Consensus 42 sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 42 PKVVILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36688999999999999999999999999999999999888766
No 81
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=23.15 E-value=87 Score=22.62 Aligned_cols=25 Identities=44% Similarity=0.492 Sum_probs=21.8
Q ss_pred HHHHHhhHHHHHHhhhhHHHHHHHH
Q 004361 281 QANLANCETELRRLQSKKEELQKEV 305 (759)
Q Consensus 281 q~~l~~ce~el~~~q~~k~elqkev 305 (759)
.+.|+..|+|-.++..|.+||-.+|
T Consensus 5 nallasleaenkqlkakveellakv 29 (31)
T 1p9i_A 5 NALLASLEAENKQLKAKVEELLAKV 29 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4778999999999999999997766
No 82
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=22.56 E-value=38 Score=25.54 Aligned_cols=29 Identities=17% Similarity=0.244 Sum_probs=20.6
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 004361 289 TELRRLQSKKEELQKEVDRLNEVAEKAQM 317 (759)
Q Consensus 289 ~el~~~q~~k~elqkev~~l~e~ae~aq~ 317 (759)
++++.++.|...||.+.|.+.+-++.+|-
T Consensus 4 ~~i~avKkKiq~lq~q~d~aee~~~~~~~ 32 (37)
T 3azd_A 4 SSLEAVRRKIRSLQEQNYHLENEVARLKK 32 (37)
T ss_dssp --CHHHHHHHHHHHHHTTTTHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888888888877777653
No 83
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=22.53 E-value=1.3e+02 Score=26.75 Aligned_cols=45 Identities=29% Similarity=0.406 Sum_probs=33.9
Q ss_pred chhhHHHHHhhhHHHHHHHHHhhHHHHHHhh--------hhHHHHHHHHHHHH
Q 004361 265 EEDGLLLAAENDIKECQANLANCETELRRLQ--------SKKEELQKEVDRLN 309 (759)
Q Consensus 265 ~~~~~~~~a~~di~~~q~~l~~ce~el~~~q--------~~k~elqkev~~l~ 309 (759)
+.-.++..++.++.||+.-|..||.|++.+. .|..+-+.++++|.
T Consensus 46 ~rk~~i~~ie~~ldEA~eLl~qMelE~r~~p~s~R~~~~~klr~Yk~dL~~lk 98 (102)
T 2qyw_A 46 EKKKLVRDFDEKQQEANETLAEMEEELRYAPLTFRNPMMSKLRNYRKDLAKLH 98 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788899999999999999999998765 45555555555543
No 84
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=21.60 E-value=4.1e+02 Score=23.28 Aligned_cols=45 Identities=20% Similarity=0.306 Sum_probs=20.0
Q ss_pred HhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 004361 273 AENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQM 317 (759)
Q Consensus 273 a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l~e~ae~aq~ 317 (759)
|.+....|++.+-.-+.+....-.....||+++.-|..-.++++.
T Consensus 21 a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e 65 (101)
T 3u59_A 21 AIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSE 65 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444333
No 85
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=21.55 E-value=5.6e+02 Score=26.69 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=13.5
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHh
Q 004361 699 VGLVAHFVSGLPGPASIVIGNGLA 722 (759)
Q Consensus 699 VG~al~~lLGls~~~ALLLGaILS 722 (759)
+|+.++..+|++......++...+
T Consensus 244 lg~~~~r~~~~~~~~~~ti~~e~G 267 (332)
T 3zux_A 244 LGFFAAKWTGLPYDAQKALTIEVG 267 (332)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHhHhhhhhhhhh
Confidence 455555567887665555444333
No 86
>3ter_A Mammalian stromal interaction molecule-1; dimer, metal binding protein; 2.55A {Caenorhabditis elegans}
Probab=21.47 E-value=4e+02 Score=25.43 Aligned_cols=117 Identities=14% Similarity=0.080 Sum_probs=60.7
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhchhHHHHHHHhhhHhHHHHHHHHhHHHHHHHHHHHHHHH
Q 004361 147 PPTTDELRELLMNAMKELEVAQLNSTMFEEKAQRISEAAIALKDEAANAWNNVNVTLDMVHEIVNEECIAKEAVHKATMA 226 (759)
Q Consensus 147 ~~~~~~l~e~l~~a~~ele~a~~ns~~fe~kaq~ise~ai~l~d~a~~a~~~v~~~l~~iq~~~~~e~~akeav~~atma 226 (759)
..+++.||..|++|-++||--+-..+ --.+-.-|...+-.+ |. |.=+.-
T Consensus 5 ~~Ele~lr~aL~~AE~eLe~~~~~w~----------------~p~~Lq~wLq~T~E~---------E~------q~~~~k 53 (136)
T 3ter_A 5 HTEMENLRVQLEEAERRLEANSNGSQ----------------APLALQPLLRRTCEN---------EM------AFLEKQ 53 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHC-----CC----------------CCTTHHHHHHHHHHH---------HH------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcC----------------CCHHHHHHHHHHhHH---------HH------HHHHHc
Confidence 34589999999999999986110000 111223354444221 11 111122
Q ss_pred HHHHHHHHHHHHHHhhhhccCCCCCCCCcccccC--CCCcchhhHHHHHhhhHHHHHHHHHhhHHHHHHh
Q 004361 227 LSLAEARLQVAIESLQDVKQEDDYPEGSTEDDAK--SDGKEEDGLLLAAENDIKECQANLANCETELRRL 294 (759)
Q Consensus 227 lslaearlq~a~e~~~~~~~~~~~~~~s~~~~~~--~d~~~~~~~~~~a~~di~~~q~~l~~ce~el~~~ 294 (759)
=-.||.+++.|.|+.+-.+-.--+.=||--.--. ....+-+-.++.|+.-+.+..+.|-+|-.+-.+|
T Consensus 54 k~~Aekql~~Ake~~eKlkKKrsSv~gs~~~aHs~~sslD~vD~~Il~Ak~aL~evt~~l~Er~~RW~qI 123 (136)
T 3ter_A 54 RQDCFKEMKEAIEMVDRLQKKQGSVLSSLKLATGAASTSDQVDSKIFALKSRMEKIHTLTRETQERWLQI 123 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC------CCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHhhhchheeeeeecCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2357888888888888766554433332211111 2233355677888877777777777776655544
No 87
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=21.46 E-value=4.2e+02 Score=23.37 Aligned_cols=54 Identities=9% Similarity=0.189 Sum_probs=25.0
Q ss_pred hHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 004361 276 DIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVANI 329 (759)
Q Consensus 276 di~~~q~~l~~ce~el~~~q~~k~elqkev~~l~e~ae~aq~~a~kaeedvani 329 (759)
|.-..+.-...|+.+++....+...+-.||.-|+-+-...+.+-.++++.+.-+
T Consensus 17 e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea 70 (101)
T 3u1c_A 17 DKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKS 70 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444444444444444444455544433
No 88
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=21.24 E-value=2.2e+02 Score=25.81 Aligned_cols=43 Identities=26% Similarity=0.299 Sum_probs=24.9
Q ss_pred HHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 004361 284 LANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDV 326 (759)
Q Consensus 284 l~~ce~el~~~q~~k~elqkev~~l~e~ae~aq~~a~kaeedv 326 (759)
|...-.+|++++.++.....|..+|.+.....+-.-..||...
T Consensus 7 ~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~ 49 (97)
T 2eqb_B 7 YNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEA 49 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344456666666666666666666655555555555555443
No 89
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=21.24 E-value=3.7e+02 Score=23.30 Aligned_cols=30 Identities=17% Similarity=0.367 Sum_probs=14.8
Q ss_pred HHHhhHHHHHHhhhhHHHHHHHHHHHHHHH
Q 004361 283 NLANCETELRRLQSKKEELQKEVDRLNEVA 312 (759)
Q Consensus 283 ~l~~ce~el~~~q~~k~elqkev~~l~e~a 312 (759)
....++.++.+|..++..+++++..|....
T Consensus 78 ~~e~ie~~i~~le~~~~~l~~~l~~lk~~l 107 (117)
T 2zqm_A 78 KIETLEVRLNALERQEKKLNEKLKELTAQI 107 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555554433
No 90
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=20.50 E-value=8.4e+02 Score=26.46 Aligned_cols=10 Identities=10% Similarity=0.322 Sum_probs=5.4
Q ss_pred cCChhHHhhh
Q 004361 671 ELSVERLSSM 680 (759)
Q Consensus 671 ELDl~~LKr~ 680 (759)
+++.+..++.
T Consensus 369 ~~~~~~~~~~ 378 (473)
T 2zy9_A 369 DLDLRDWRRV 378 (473)
T ss_dssp SSCGGGHHHH
T ss_pred CCCHHHHHHH
Confidence 4566555543
No 91
>2y44_A GARP, glutamic acid/alanine-rich protein; membrane protein, surface protein; 1.65A {Trypanosoma congolense}
Probab=20.41 E-value=6.5e+02 Score=25.09 Aligned_cols=34 Identities=15% Similarity=0.176 Sum_probs=27.2
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 004361 291 LRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEE 324 (759)
Q Consensus 291 l~~~q~~k~elqkev~~l~e~ae~aq~~a~kaee 324 (759)
.+.|...-.++++|..-|.+-.+.|.-+..+||.
T Consensus 149 ~~~lr~~~~~~~~~l~~LE~~~~~a~~a~~~Ae~ 182 (184)
T 2y44_A 149 ADDIREHGAVFVKGLKSLEDDVRTAGEAKYEAEK 182 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556667789999999999988888888777764
No 92
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=20.38 E-value=2e+02 Score=25.06 Aligned_cols=43 Identities=19% Similarity=0.309 Sum_probs=34.2
Q ss_pred hhhHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHH
Q 004361 266 EDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRL 308 (759)
Q Consensus 266 ~~~~~~~a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l 308 (759)
.+++...-.+.+..++..+..++.++..++.+..+++++.-.+
T Consensus 68 ~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~ 110 (117)
T 2zqm_A 68 KDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSA 110 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777788888888889999999988888888876544
No 93
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=20.28 E-value=1.8e+02 Score=26.60 Aligned_cols=13 Identities=15% Similarity=0.110 Sum_probs=6.6
Q ss_pred CCChHHHHHHHHH
Q 004361 708 GLPGPASIVIGNG 720 (759)
Q Consensus 708 Gls~~~ALLLGaI 720 (759)
|+++..++.++.+
T Consensus 50 ~~~~~~a~y~~~~ 62 (148)
T 3vou_A 50 GLRPLDALYFSVV 62 (148)
T ss_dssp CCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 5555555554433
No 94
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=20.20 E-value=5.2e+02 Score=27.59 Aligned_cols=51 Identities=10% Similarity=0.036 Sum_probs=25.5
Q ss_pred hhHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 004361 267 DGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQM 317 (759)
Q Consensus 267 ~~~~~~a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l~e~ae~aq~ 317 (759)
.+.+..=...++.-+.-.++.|.|..+...-.+..|+++.+|.|-.++.+.
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (487)
T 3oja_A 406 QSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKK 456 (487)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhh
Confidence 344444444444444455555555555544455555555555554444333
Done!