Query 004361
Match_columns 759
No_of_seqs 209 out of 1195
Neff 3.8
Searched_HMMs 13730
Date Mon Mar 25 22:47:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004361.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/004361hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nkpa_ a.38.1.1 (A:) Myc prot 44.2 53 0.0039 26.0 8.7 44 265-308 42-85 (88)
2 d1sf9a_ b.34.15.1 (A:) Hypothe 36.6 11 0.00083 32.9 3.4 35 287-323 15-49 (118)
3 d1l7va_ f.22.1.1 (A:) ABC tran 35.2 1.8E+02 0.013 28.1 12.7 48 621-669 53-109 (324)
4 d1x91a_ a.29.6.1 (A:) Pectin m 34.1 1.2E+02 0.0087 25.0 11.1 73 217-313 65-137 (149)
5 d1qvra2 c.37.1.20 (A:149-535) 32.2 2E+02 0.015 28.3 12.8 32 140-171 176-207 (387)
6 d1fxkc_ a.2.5.1 (C:) Prefoldin 30.1 1.4E+02 0.01 24.6 12.7 48 264-311 84-131 (133)
7 d1vcsa1 a.47.2.1 (A:8-96) Vesi 26.4 63 0.0046 26.2 6.3 53 265-317 28-88 (89)
8 d1nkpb_ a.38.1.1 (B:) Max prot 24.1 50 0.0036 25.9 5.1 45 264-308 36-80 (83)
9 d1uuja_ a.221.1.1 (A:) Lissenc 23.6 11 0.00083 30.6 1.0 21 290-310 56-76 (76)
10 d1pv7a_ f.38.1.2 (A:) Lactose 17.4 3E+02 0.022 23.8 9.6 13 611-623 274-286 (417)
No 1
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=44.22 E-value=53 Score=26.01 Aligned_cols=44 Identities=23% Similarity=0.252 Sum_probs=38.2
Q ss_pred chhhHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHH
Q 004361 265 EEDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRL 308 (759)
Q Consensus 265 ~~~~~~~~a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l 308 (759)
.+-..|..|.+-|+..+..+...+.++..++.+..+|++++..|
T Consensus 42 sK~~iL~~A~~yI~~L~~~~~~l~~~~~~l~~~~~~L~~~l~~L 85 (88)
T d1nkpa_ 42 PKVVILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36789999999999999999888888888888888888888765
No 2
>d1sf9a_ b.34.15.1 (A:) Hypothetical protein YfhH {Bacillus subtilis [TaxId: 1423]}
Probab=36.57 E-value=11 Score=32.87 Aligned_cols=35 Identities=29% Similarity=0.395 Sum_probs=25.1
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 004361 287 CETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAE 323 (759)
Q Consensus 287 ce~el~~~q~~k~elqkev~~l~e~ae~aq~~a~kae 323 (759)
|+.+++.. -+.|||.|+..|+|+|.||++.----|
T Consensus 15 m~krySeM--s~~EL~~EIa~L~EKaRKAEq~GivnE 49 (118)
T d1sf9a_ 15 MEKRYSQM--TPHELNTEIALLSEKARKAEQHGIINE 49 (118)
T ss_dssp HHHHHHTC--CHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hhHHHHhc--CHHHHHHHHHHHHHHHHHHHHccChhH
Confidence 34444433 478999999999999999987654333
No 3
>d1l7va_ f.22.1.1 (A:) ABC transporter involved in vitamin B12 uptake, BtuC {Escherichia coli [TaxId: 562]}
Probab=35.17 E-value=1.8e+02 Score=28.12 Aligned_cols=48 Identities=17% Similarity=0.117 Sum_probs=29.6
Q ss_pred HhcCCCchHHHHHHHHHhhccccc-------ccccchh--hHHHHHHHHHHHHHHHHh
Q 004361 621 QKIPGGSPVLGYLAAGILIGPYGL-------SIIRHVH--GTKAIAEFGVVFLLFNIG 669 (759)
Q Consensus 621 rRL~gLP~VVGyILAGIILGPsgL-------GlI~~~e--iLe~LAEIGLIfLLFlaG 669 (759)
..+ |+|.++.-+++|..+|-.+. |.+-+++ .+..-+.+|+++.++..+
T Consensus 53 ~~i-RlPR~l~a~l~Ga~La~sG~~lQ~~~rNpLA~P~ilGissGA~l~~v~~~~~~~ 109 (324)
T d1l7va_ 53 WQI-RLPRTLAVLLVGAALAISGAVMQALFENPLAEPGLLGVSNGAGVGLIAAVLLGQ 109 (324)
T ss_dssp HHT-HHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTTTTTHHHHHHHHHHHHHHTSC
T ss_pred hhh-hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCchHHHhhhHHHHHHHHHHHhcc
Confidence 334 67999999999999985442 2222233 245566677666555443
No 4
>d1x91a_ a.29.6.1 (A:) Pectin methylesterase inhibitor 1, PMEI1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=34.06 E-value=1.2e+02 Score=24.97 Aligned_cols=73 Identities=16% Similarity=0.222 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCcccccCCCCcchhhHHHHHhhhHHHHHHHHHhhHHHHHHhhh
Q 004361 217 KEAVHKATMALSLAEARLQVAIESLQDVKQEDDYPEGSTEDDAKSDGKEEDGLLLAAENDIKECQANLANCETELRRLQS 296 (759)
Q Consensus 217 keav~~atmalslaearlq~a~e~~~~~~~~~~~~~~s~~~~~~~d~~~~~~~~~~a~~di~~~q~~l~~ce~el~~~q~ 296 (759)
|.+++.-.-.+..|-.+|+.|.+++... | ...++.....+-.+...|++.++....
T Consensus 65 ~~al~~C~~~y~~a~~~L~~a~~~l~~~-----------------~-------~~~~~~~lsaa~~~~~tC~d~f~~~~~ 120 (149)
T d1x91a_ 65 KLAYRSCVDEYESAIGNLEEAFEHLASG-----------------D-------GMGMNMKVSAALDGADTCLDDVKRLRS 120 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT-----------------C-------HHHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC-----------------C-------HHHHHHHHHHHHHhHhHhHHHHhhcCC
Confidence 3445545555666667777777777652 1 235667777777788888888876554
Q ss_pred hHHHHHHHHHHHHHHHH
Q 004361 297 KKEELQKEVDRLNEVAE 313 (759)
Q Consensus 297 ~k~elqkev~~l~e~ae 313 (759)
.+..+.+....+.++..
T Consensus 121 ~~s~l~~~~~~~~~l~~ 137 (149)
T d1x91a_ 121 VDSSVVNNSKTIKNLCG 137 (149)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHH
Confidence 55556666555555443
No 5
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=32.20 E-value=2e+02 Score=28.34 Aligned_cols=32 Identities=19% Similarity=0.126 Sum_probs=25.8
Q ss_pred cccccCCCCCcHHHHHHHHHHHHHHHHHhhhh
Q 004361 140 ETKEDAEPPTTDELRELLMNAMKELEVAQLNS 171 (759)
Q Consensus 140 ~~~~~~~~~~~~~l~e~l~~a~~ele~a~~ns 171 (759)
=..|.++.|+.++....|+..+..+|.=-.-.
T Consensus 176 F~~v~v~ep~~~~~~~il~~~~~~~e~~h~v~ 207 (387)
T d1qvra2 176 FQPVYVDEPTVEETISILRGLKEKYEVHHGVR 207 (387)
T ss_dssp CCCEEECCCCHHHHHHHHHHHHHHHHHHTTCE
T ss_pred cccccCCCCcHHHHHHHHHHHHHHHHhccCCc
Confidence 34577889999999999999999998654433
No 6
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=30.14 E-value=1.4e+02 Score=24.61 Aligned_cols=48 Identities=15% Similarity=0.207 Sum_probs=41.6
Q ss_pred cchhhHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHH
Q 004361 264 KEEDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEV 311 (759)
Q Consensus 264 ~~~~~~~~~a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l~e~ 311 (759)
+.-++|..--...|++.+.++.+.+.++..++.+..+++.++.++...
T Consensus 84 ~~~~eA~~~l~~ri~~l~~~~~~l~~~~~~~~~~i~~l~~~~~~l~~a 131 (133)
T d1fxkc_ 84 KNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLAA 131 (133)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445688888899999999999999999999999999999998887654
No 7
>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=26.43 E-value=63 Score=26.24 Aligned_cols=53 Identities=15% Similarity=0.382 Sum_probs=42.9
Q ss_pred chhhHHHHHhhhHHHHHHHHHhhHHHHHHh--------hhhHHHHHHHHHHHHHHHHHHHH
Q 004361 265 EEDGLLLAAENDIKECQANLANCETELRRL--------QSKKEELQKEVDRLNEVAEKAQM 317 (759)
Q Consensus 265 ~~~~~~~~a~~di~~~q~~l~~ce~el~~~--------q~~k~elqkev~~l~e~ae~aq~ 317 (759)
+.-.++-.+...+.+|+.-|..|+.|.+.+ +.|.-..+.++++|..-..+|++
T Consensus 28 erk~~l~~ie~~leEA~ell~qMelEvr~~p~s~R~~~~~klr~Yk~dl~~lk~elk~a~~ 88 (89)
T d1vcsa1 28 EKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKRSRI 88 (89)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHHHTHHHHT
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 355888999999999999999999998754 57777888888888777666654
No 8
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.08 E-value=50 Score=25.89 Aligned_cols=45 Identities=16% Similarity=0.206 Sum_probs=36.2
Q ss_pred cchhhHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHH
Q 004361 264 KEEDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRL 308 (759)
Q Consensus 264 ~~~~~~~~~a~~di~~~q~~l~~ce~el~~~q~~k~elqkev~~l 308 (759)
..+-..|..|.+=|+..+......+.++..++.+.+.|++++..|
T Consensus 36 ~sK~~iL~~A~~yI~~L~~~~~~l~~~~~~l~~~~~~L~~~l~~L 80 (83)
T d1nkpb_ 36 ASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 347789999999999999888888888888777777777776544
No 9
>d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=23.58 E-value=11 Score=30.63 Aligned_cols=21 Identities=33% Similarity=0.458 Sum_probs=17.4
Q ss_pred HHHHhhhhHHHHHHHHHHHHH
Q 004361 290 ELRRLQSKKEELQKEVDRLNE 310 (759)
Q Consensus 290 el~~~q~~k~elqkev~~l~e 310 (759)
-.-|||.|+|+|+.++..|+|
T Consensus 56 SViRLQkKImdLE~~~~~lqe 76 (76)
T d1uuja_ 56 SVIRLQKKVMELESKLNEAKE 76 (76)
T ss_dssp CHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 356899999999999988764
No 10
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=17.42 E-value=3e+02 Score=23.81 Aligned_cols=13 Identities=15% Similarity=0.074 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHhc
Q 004361 611 LASVIFVPIFQKI 623 (759)
Q Consensus 611 laA~LLg~LlrRL 623 (759)
+...+.+.+.+|.
T Consensus 274 ~~~~~~~~l~~r~ 286 (417)
T d1pv7a_ 274 SIMFFAPLIINRI 286 (417)
T ss_dssp HHHTTHHHHHHHH
T ss_pred cchhhhhhhhccc
Confidence 3344455666776
Done!