Query 004362
Match_columns 759
No_of_seqs 652 out of 4151
Neff 11.7
Searched_HMMs 46136
Date Thu Mar 28 22:08:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004362.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004362hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 1.7E-82 3.6E-87 708.5 74.7 707 7-742 54-777 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 1.5E-79 3.3E-84 684.7 69.3 655 75-755 50-709 (857)
3 PLN03218 maturation of RBCL 1; 100.0 8.3E-67 1.8E-71 567.4 66.9 546 143-707 367-915 (1060)
4 PLN03218 maturation of RBCL 1; 100.0 6.6E-66 1.4E-70 560.4 67.4 547 37-601 367-915 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 5.6E-63 1.2E-67 538.1 52.7 518 178-748 84-620 (697)
6 PLN03081 pentatricopeptide (PP 100.0 1.4E-59 2.9E-64 511.6 54.9 577 77-702 88-674 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 3.7E-44 8E-49 413.7 86.9 721 8-756 163-891 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 2.4E-43 5.2E-48 406.9 91.3 710 10-746 131-846 (899)
9 PRK11447 cellulose synthase su 100.0 3.5E-32 7.5E-37 311.3 75.5 641 43-706 31-746 (1157)
10 PRK11447 cellulose synthase su 100.0 5.2E-31 1.1E-35 301.6 75.7 635 14-670 38-745 (1157)
11 PRK09782 bacteriophage N4 rece 100.0 2.6E-27 5.5E-32 257.6 73.1 638 49-735 53-743 (987)
12 PRK09782 bacteriophage N4 rece 100.0 2E-27 4.4E-32 258.3 72.3 642 15-708 55-745 (987)
13 KOG2002 TPR-containing nuclear 100.0 4.4E-25 9.5E-30 223.2 58.4 596 20-629 110-743 (1018)
14 KOG2002 TPR-containing nuclear 100.0 1.6E-24 3.4E-29 219.2 61.3 624 91-731 145-831 (1018)
15 KOG4626 O-linked N-acetylgluco 100.0 3.8E-25 8.2E-30 212.0 37.2 436 220-674 52-491 (966)
16 KOG4626 O-linked N-acetylgluco 100.0 1E-24 2.2E-29 209.0 38.3 442 254-714 51-499 (966)
17 KOG0495 HAT repeat protein [RN 99.9 7.3E-20 1.6E-24 177.2 62.6 496 231-749 391-897 (913)
18 KOG2076 RNA polymerase III tra 99.9 1.5E-18 3.3E-23 175.3 60.3 336 42-382 141-509 (895)
19 TIGR00990 3a0801s09 mitochondr 99.9 3.1E-20 6.8E-25 200.1 49.9 431 288-739 129-578 (615)
20 TIGR00990 3a0801s09 mitochondr 99.9 1.3E-19 2.9E-24 195.2 54.3 253 405-665 308-570 (615)
21 KOG2076 RNA polymerase III tra 99.9 5.3E-18 1.1E-22 171.4 59.9 660 16-698 151-892 (895)
22 PRK15174 Vi polysaccharide exp 99.9 1.9E-20 4.2E-25 200.4 45.1 335 324-671 45-384 (656)
23 KOG0495 HAT repeat protein [RN 99.9 1.3E-16 2.9E-21 154.9 63.9 622 52-714 263-891 (913)
24 PRK15174 Vi polysaccharide exp 99.9 1.4E-19 3.1E-24 193.7 47.2 383 260-665 14-402 (656)
25 PRK11788 tetratricopeptide rep 99.9 3.7E-20 8E-25 189.9 36.6 297 401-706 45-352 (389)
26 PRK10049 pgaA outer membrane p 99.9 2.6E-18 5.7E-23 188.3 50.2 421 218-682 17-470 (765)
27 PRK11788 tetratricopeptide rep 99.9 8.9E-20 1.9E-24 187.1 36.1 304 362-673 41-354 (389)
28 PRK10049 pgaA outer membrane p 99.9 4.6E-18 1E-22 186.5 47.5 441 166-646 2-469 (765)
29 PRK14574 hmsH outer membrane p 99.9 9.7E-17 2.1E-21 171.8 54.5 454 190-679 43-524 (822)
30 PRK14574 hmsH outer membrane p 99.9 4.5E-16 9.7E-21 166.8 55.3 437 44-490 38-513 (822)
31 KOG2003 TPR repeat-containing 99.8 6.9E-17 1.5E-21 150.0 34.5 482 179-686 199-708 (840)
32 KOG1915 Cell cycle control pro 99.8 1.3E-14 2.8E-19 136.0 49.5 473 180-665 72-584 (677)
33 KOG2003 TPR repeat-containing 99.8 1.4E-15 3.1E-20 141.4 33.7 439 256-706 206-692 (840)
34 KOG1915 Cell cycle control pro 99.8 3.4E-13 7.4E-18 126.6 49.4 461 61-539 60-548 (677)
35 KOG4422 Uncharacterized conser 99.8 8.5E-14 1.8E-18 128.9 41.3 239 283-525 204-462 (625)
36 KOG4422 Uncharacterized conser 99.8 1E-13 2.2E-18 128.4 41.2 455 86-578 125-608 (625)
37 KOG2047 mRNA splicing factor [ 99.8 1.9E-11 4.2E-16 119.5 58.4 313 404-724 360-715 (835)
38 KOG1155 Anaphase-promoting com 99.8 1.4E-13 3.1E-18 129.0 40.5 382 318-732 161-553 (559)
39 KOG1155 Anaphase-promoting com 99.7 2.7E-13 5.9E-18 127.1 41.7 379 283-682 161-550 (559)
40 KOG0547 Translocase of outer m 99.7 2.7E-14 5.8E-19 134.6 33.3 220 471-700 336-565 (606)
41 KOG2047 mRNA splicing factor [ 99.7 6.7E-11 1.5E-15 115.8 57.4 610 39-687 26-709 (835)
42 KOG1173 Anaphase-promoting com 99.7 4.5E-13 9.7E-18 129.1 40.7 510 145-683 15-533 (611)
43 KOG1173 Anaphase-promoting com 99.7 3.4E-13 7.3E-18 129.9 39.3 274 423-706 241-521 (611)
44 PF13429 TPR_15: Tetratricopep 99.7 8.2E-17 1.8E-21 155.5 12.8 261 431-700 13-276 (280)
45 KOG0547 Translocase of outer m 99.7 4.8E-14 1E-18 132.9 30.3 227 504-739 334-573 (606)
46 PRK10747 putative protoheme IX 99.7 1.5E-13 3.2E-18 138.9 35.1 283 369-665 97-389 (398)
47 TIGR00540 hemY_coli hemY prote 99.7 2E-13 4.4E-18 138.9 34.7 128 565-698 262-396 (409)
48 PRK10747 putative protoheme IX 99.7 2.2E-13 4.8E-18 137.7 34.6 283 404-700 97-389 (398)
49 TIGR00540 hemY_coli hemY prote 99.7 3.3E-13 7.2E-18 137.3 35.6 294 366-665 94-398 (409)
50 KOG1126 DNA-binding cell divis 99.7 3E-14 6.4E-19 140.2 24.8 286 406-706 334-623 (638)
51 PF13429 TPR_15: Tetratricopep 99.7 6.2E-16 1.4E-20 149.4 13.1 262 396-665 13-276 (280)
52 KOG4162 Predicted calmodulin-b 99.7 1E-10 2.2E-15 117.4 48.1 125 604-734 652-785 (799)
53 KOG4162 Predicted calmodulin-b 99.6 5.6E-11 1.2E-15 119.3 46.0 240 211-453 318-574 (799)
54 KOG1126 DNA-binding cell divis 99.6 5.1E-14 1.1E-18 138.6 24.2 289 371-674 334-626 (638)
55 KOG1127 TPR repeat-containing 99.6 1.9E-10 4.1E-15 118.4 49.3 666 46-744 465-1187(1238)
56 KOG4318 Bicoid mRNA stability 99.6 6.1E-11 1.3E-15 120.5 45.2 654 31-735 16-811 (1088)
57 KOG3785 Uncharacterized conser 99.6 8.1E-11 1.8E-15 106.7 40.3 472 190-705 31-518 (557)
58 COG2956 Predicted N-acetylgluc 99.6 1.7E-12 3.7E-17 116.2 29.3 304 4-315 34-347 (389)
59 KOG1156 N-terminal acetyltrans 99.6 1.4E-09 3E-14 107.2 51.9 467 5-489 3-510 (700)
60 KOG3785 Uncharacterized conser 99.6 8.8E-11 1.9E-15 106.5 39.2 198 48-260 30-228 (557)
61 COG3071 HemY Uncharacterized e 99.6 9.7E-12 2.1E-16 115.2 33.4 286 369-665 97-389 (400)
62 KOG1156 N-terminal acetyltrans 99.6 7.7E-09 1.7E-13 102.2 55.0 464 42-524 10-510 (700)
63 KOG1127 TPR repeat-containing 99.6 2.4E-09 5.2E-14 110.6 51.8 653 18-700 472-1174(1238)
64 KOG4318 Bicoid mRNA stability 99.6 6.5E-11 1.4E-15 120.3 39.9 272 98-405 12-285 (1088)
65 COG2956 Predicted N-acetylgluc 99.6 1E-11 2.2E-16 111.4 30.1 244 440-694 49-304 (389)
66 COG3071 HemY Uncharacterized e 99.6 4.4E-11 9.5E-16 111.0 33.1 287 403-700 96-389 (400)
67 KOG1174 Anaphase-promoting com 99.5 9.9E-10 2.2E-14 102.0 37.4 271 423-706 229-503 (564)
68 KOG1174 Anaphase-promoting com 99.5 2.5E-09 5.4E-14 99.4 38.9 312 353-676 191-508 (564)
69 KOG1129 TPR repeat-containing 99.5 4E-12 8.6E-17 113.8 19.7 232 465-706 227-461 (478)
70 KOG1129 TPR repeat-containing 99.5 2.6E-12 5.7E-17 114.9 18.2 231 499-737 226-463 (478)
71 TIGR02521 type_IV_pilW type IV 99.5 2.9E-11 6.2E-16 114.7 25.7 200 496-700 31-231 (234)
72 PRK12370 invasion protein regu 99.5 3E-11 6.5E-16 128.0 26.6 216 441-665 276-501 (553)
73 TIGR02521 type_IV_pilW type IV 99.5 6.5E-11 1.4E-15 112.2 26.4 201 460-665 30-231 (234)
74 KOG0985 Vesicle coat protein c 99.4 2.4E-07 5.2E-12 96.1 52.3 535 42-626 608-1244(1666)
75 KOG0985 Vesicle coat protein c 99.4 1.1E-07 2.3E-12 98.6 49.7 246 118-381 488-749 (1666)
76 PRK12370 invasion protein regu 99.4 5.3E-11 1.1E-15 126.1 26.9 216 55-278 276-500 (553)
77 PF12569 NARP1: NMDA receptor- 99.4 2.2E-08 4.7E-13 102.1 41.1 289 191-489 14-333 (517)
78 KOG3616 Selective LIM binding 99.4 3.1E-07 6.6E-12 92.1 47.5 216 16-276 718-933 (1636)
79 COG3063 PilF Tfp pilus assembl 99.4 1.2E-10 2.6E-15 99.8 20.5 194 533-732 37-236 (250)
80 KOG3617 WD40 and TPR repeat-co 99.4 2E-07 4.2E-12 94.7 45.6 545 86-736 738-1363(1416)
81 COG3063 PilF Tfp pilus assembl 99.4 8.6E-10 1.9E-14 94.6 24.7 206 464-676 38-244 (250)
82 KOG2376 Signal recognition par 99.4 6.1E-08 1.3E-12 94.9 40.4 225 44-286 16-258 (652)
83 KOG2376 Signal recognition par 99.4 7.4E-08 1.6E-12 94.4 40.4 446 188-662 19-516 (652)
84 PF12569 NARP1: NMDA receptor- 99.4 3.2E-08 7E-13 100.9 39.4 128 220-349 198-333 (517)
85 KOG3616 Selective LIM binding 99.4 1.6E-07 3.4E-12 94.1 42.7 370 187-627 563-933 (1636)
86 KOG3617 WD40 and TPR repeat-co 99.3 5.8E-07 1.3E-11 91.4 46.6 139 49-207 737-884 (1416)
87 PRK11189 lipoprotein NlpI; Pro 99.3 1.1E-09 2.3E-14 106.0 26.0 219 18-246 40-266 (296)
88 KOG1840 Kinesin light chain [C 99.3 8.8E-10 1.9E-14 110.6 24.7 239 462-700 200-478 (508)
89 KOG0548 Molecular co-chaperone 99.3 1.5E-08 3.2E-13 98.2 31.3 386 294-700 10-454 (539)
90 KOG0548 Molecular co-chaperone 99.3 4.1E-08 8.8E-13 95.2 32.9 418 259-706 10-491 (539)
91 KOG1840 Kinesin light chain [C 99.3 3.1E-09 6.8E-14 106.7 25.9 199 466-664 246-477 (508)
92 PRK11189 lipoprotein NlpI; Pro 99.3 5.7E-09 1.2E-13 100.9 27.1 227 441-679 41-277 (296)
93 KOG1125 TPR repeat-containing 99.3 8.8E-10 1.9E-14 107.4 20.8 251 436-694 295-564 (579)
94 KOG0624 dsRNA-activated protei 99.2 1.5E-07 3.2E-12 85.8 31.9 194 470-673 164-375 (504)
95 KOG2053 Mitochondrial inherita 99.2 6.3E-06 1.4E-10 85.4 45.0 226 16-248 21-258 (932)
96 KOG4340 Uncharacterized conser 99.2 8.8E-08 1.9E-12 85.4 27.7 290 44-346 14-335 (459)
97 KOG0624 dsRNA-activated protei 99.2 3.7E-07 7.9E-12 83.2 31.7 187 506-700 165-369 (504)
98 KOG2053 Mitochondrial inherita 99.1 1.4E-05 3E-10 82.9 43.4 518 51-593 20-606 (932)
99 KOG1125 TPR repeat-containing 99.1 1.2E-08 2.6E-13 99.8 20.3 231 5-243 286-525 (579)
100 KOG4340 Uncharacterized conser 99.1 2E-07 4.3E-12 83.2 25.5 355 216-593 10-373 (459)
101 KOG1914 mRNA cleavage and poly 99.1 1.7E-05 3.6E-10 77.5 42.6 186 477-665 309-500 (656)
102 cd05804 StaR_like StaR_like; a 99.1 4.6E-07 1E-11 91.7 32.5 195 10-209 12-214 (355)
103 PF13041 PPR_2: PPR repeat fam 99.1 4E-10 8.6E-15 75.0 6.6 50 109-158 1-50 (50)
104 cd05804 StaR_like StaR_like; a 99.1 7.8E-07 1.7E-11 90.1 33.2 198 41-243 7-213 (355)
105 PF13041 PPR_2: PPR repeat fam 99.1 4E-10 8.7E-15 75.0 6.1 49 179-227 1-49 (50)
106 PRK04841 transcriptional regul 99.1 1.3E-05 2.8E-10 92.4 46.5 264 153-418 348-639 (903)
107 KOG1914 mRNA cleavage and poly 99.0 1.8E-05 3.8E-10 77.3 38.8 182 547-732 309-501 (656)
108 PF04733 Coatomer_E: Coatomer 99.0 6.2E-09 1.3E-13 98.7 14.5 256 400-673 10-270 (290)
109 KOG3060 Uncharacterized conser 99.0 2.2E-07 4.8E-12 81.2 21.8 159 536-700 57-219 (289)
110 KOG1128 Uncharacterized conser 99.0 9.8E-08 2.1E-12 96.0 22.4 221 423-665 395-615 (777)
111 KOG1070 rRNA processing protei 99.0 1.9E-07 4E-12 100.5 25.6 243 479-731 1443-1699(1710)
112 PF04733 Coatomer_E: Coatomer 99.0 1.7E-08 3.8E-13 95.7 16.5 115 542-665 113-229 (290)
113 KOG1128 Uncharacterized conser 99.0 1.5E-07 3.2E-12 94.8 23.1 222 456-700 393-615 (777)
114 PRK04841 transcriptional regul 99.0 3.4E-06 7.3E-11 97.2 37.0 333 331-665 384-759 (903)
115 PRK15359 type III secretion sy 98.9 4.5E-08 9.8E-13 82.8 15.6 118 552-678 14-131 (144)
116 PLN02789 farnesyltranstransfer 98.9 5.8E-07 1.2E-11 86.6 24.6 194 466-665 42-249 (320)
117 PLN02789 farnesyltranstransfer 98.9 1.1E-06 2.4E-11 84.6 26.6 185 509-700 50-249 (320)
118 KOG1070 rRNA processing protei 98.9 6.1E-07 1.3E-11 96.7 26.5 233 425-663 1457-1697(1710)
119 COG5010 TadD Flp pilus assembl 98.9 1.4E-07 3E-12 83.4 18.2 156 535-697 70-227 (257)
120 PRK10370 formate-dependent nit 98.9 2.2E-07 4.7E-12 83.3 20.0 122 544-671 52-176 (198)
121 TIGR03302 OM_YfiO outer membra 98.9 1.9E-07 4.1E-12 87.9 19.8 182 495-700 32-231 (235)
122 COG5010 TadD Flp pilus assembl 98.9 3.9E-07 8.5E-12 80.6 18.9 153 502-659 72-224 (257)
123 PRK15179 Vi polysaccharide bio 98.9 7.8E-07 1.7E-11 94.7 25.0 135 527-665 82-216 (694)
124 TIGR03302 OM_YfiO outer membra 98.8 5E-07 1.1E-11 85.1 20.2 187 458-665 30-231 (235)
125 PRK10370 formate-dependent nit 98.8 3.9E-07 8.5E-12 81.6 18.3 146 538-700 23-172 (198)
126 KOG3060 Uncharacterized conser 98.8 6.3E-06 1.4E-10 72.4 23.4 188 475-670 26-222 (289)
127 PRK15359 type III secretion sy 98.8 5.3E-07 1.1E-11 76.3 16.2 123 517-648 14-137 (144)
128 PRK15179 Vi polysaccharide bio 98.8 8.3E-07 1.8E-11 94.5 20.8 175 10-189 55-230 (694)
129 TIGR02552 LcrH_SycD type III s 98.7 3.9E-07 8.5E-12 77.1 14.5 117 554-676 6-122 (135)
130 PRK14720 transcript cleavage f 98.7 1.5E-06 3.2E-11 93.3 21.4 205 459-706 29-255 (906)
131 COG4783 Putative Zn-dependent 98.7 7.3E-06 1.6E-10 79.3 23.6 116 540-659 315-430 (484)
132 COG4783 Putative Zn-dependent 98.6 1.2E-05 2.5E-10 78.0 21.3 174 565-758 305-483 (484)
133 TIGR02552 LcrH_SycD type III s 98.6 1.4E-06 3E-11 73.7 12.9 113 587-706 4-117 (135)
134 PRK14720 transcript cleavage f 98.6 2.4E-05 5.2E-10 84.3 24.4 238 320-613 30-268 (906)
135 KOG3081 Vesicle coat complex C 98.5 3.9E-05 8.4E-10 68.1 21.1 46 582-629 189-234 (299)
136 KOG0553 TPR repeat-containing 98.5 8.9E-07 1.9E-11 80.0 10.9 102 575-682 90-192 (304)
137 PRK15363 pathogenicity island 98.5 9.4E-06 2E-10 67.0 14.4 109 564-675 33-142 (157)
138 PF09976 TPR_21: Tetratricopep 98.5 8.6E-06 1.9E-10 69.4 14.9 125 569-698 15-144 (145)
139 KOG3081 Vesicle coat complex C 98.4 0.00032 6.8E-09 62.6 23.0 138 469-618 116-257 (299)
140 KOG0550 Molecular chaperone (D 98.4 3.2E-05 7E-10 73.0 17.4 153 575-735 178-353 (486)
141 PF12854 PPR_1: PPR repeat 98.4 8.2E-07 1.8E-11 52.6 4.3 32 246-277 2-33 (34)
142 PF12854 PPR_1: PPR repeat 98.3 7.2E-07 1.6E-11 52.8 4.0 31 142-172 3-33 (34)
143 PF09976 TPR_21: Tetratricopep 98.3 2.7E-05 5.8E-10 66.4 14.9 116 543-663 23-144 (145)
144 PLN03088 SGT1, suppressor of 98.3 1.1E-05 2.4E-10 80.0 14.3 104 573-682 9-113 (356)
145 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 2.2E-05 4.7E-10 77.3 14.7 121 536-664 174-295 (395)
146 KOG0550 Molecular chaperone (D 98.3 0.00011 2.3E-09 69.6 18.2 154 505-665 178-349 (486)
147 TIGR02795 tol_pal_ybgF tol-pal 98.3 2E-05 4.3E-10 64.9 12.5 99 568-672 4-109 (119)
148 PRK15363 pathogenicity island 98.3 2E-05 4.2E-10 65.2 11.7 98 599-700 32-131 (157)
149 cd00189 TPR Tetratricopeptide 98.2 1.7E-05 3.8E-10 62.4 11.2 92 571-665 5-96 (100)
150 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 4.3E-05 9.4E-10 75.2 15.7 125 567-699 170-295 (395)
151 PF12895 Apc3: Anaphase-promot 98.2 3.6E-06 7.8E-11 63.7 5.4 82 17-101 2-83 (84)
152 COG5107 RNA14 Pre-mRNA 3'-end 98.2 0.0082 1.8E-07 58.0 36.0 463 237-744 30-543 (660)
153 PRK10153 DNA-binding transcrip 98.1 0.00011 2.4E-09 76.1 17.3 90 583-676 401-490 (517)
154 PF12895 Apc3: Anaphase-promot 98.1 8.2E-06 1.8E-10 61.7 6.2 79 616-697 3-83 (84)
155 COG4700 Uncharacterized protei 98.1 0.0011 2.3E-08 55.7 18.4 131 562-697 85-218 (251)
156 COG4235 Cytochrome c biogenesi 98.1 0.00023 5E-09 65.3 15.7 118 590-712 146-267 (287)
157 PF14938 SNAP: Soluble NSF att 98.1 0.00021 4.7E-09 68.7 16.5 120 546-665 89-224 (282)
158 KOG0553 TPR repeat-containing 98.1 5.8E-05 1.3E-09 68.6 11.5 109 539-652 89-198 (304)
159 PRK02603 photosystem I assembl 98.0 0.00021 4.6E-09 63.0 15.0 82 569-652 38-121 (172)
160 TIGR02795 tol_pal_ybgF tol-pal 98.0 0.00016 3.4E-09 59.5 13.4 101 41-141 3-106 (119)
161 COG4700 Uncharacterized protei 98.0 0.0015 3.2E-08 54.9 18.2 137 527-665 85-221 (251)
162 PRK10153 DNA-binding transcrip 98.0 0.00034 7.5E-09 72.6 17.7 139 562-706 333-485 (517)
163 COG4235 Cytochrome c biogenesi 98.0 0.00032 6.9E-09 64.5 15.0 120 554-680 145-268 (287)
164 PF12688 TPR_5: Tetratrico pep 98.0 0.00023 4.9E-09 57.0 12.5 95 604-700 3-103 (120)
165 PF13432 TPR_16: Tetratricopep 98.0 2.9E-05 6.4E-10 55.2 6.9 61 608-672 3-64 (65)
166 COG5107 RNA14 Pre-mRNA 3'-end 98.0 0.019 4.2E-07 55.5 38.4 145 532-682 398-545 (660)
167 PRK02603 photosystem I assembl 98.0 0.00026 5.5E-09 62.5 14.0 106 590-697 23-131 (172)
168 PLN03088 SGT1, suppressor of 98.0 0.00018 3.9E-09 71.5 14.4 89 539-630 10-98 (356)
169 PF13414 TPR_11: TPR repeat; P 98.0 3E-05 6.5E-10 56.1 6.7 62 602-665 3-66 (69)
170 cd00189 TPR Tetratricopeptide 97.9 0.00015 3.2E-09 56.9 11.3 94 534-630 3-96 (100)
171 PF05843 Suf: Suppressor of fo 97.9 0.0001 2.2E-09 70.5 11.9 128 534-665 4-135 (280)
172 PF14938 SNAP: Soluble NSF att 97.9 0.00047 1E-08 66.4 15.8 185 540-728 44-259 (282)
173 KOG1130 Predicted G-alpha GTPa 97.9 0.00015 3.3E-09 68.4 11.5 133 533-665 197-343 (639)
174 PRK10866 outer membrane biogen 97.9 0.0024 5.2E-08 59.4 19.2 66 39-106 31-99 (243)
175 PF07079 DUF1347: Protein of u 97.9 0.031 6.8E-07 54.3 44.6 28 358-385 300-327 (549)
176 CHL00033 ycf3 photosystem I as 97.8 0.00033 7.1E-09 61.6 12.6 102 20-122 15-117 (168)
177 CHL00033 ycf3 photosystem I as 97.8 0.00041 8.9E-09 61.0 13.1 96 566-663 35-139 (168)
178 PRK10803 tol-pal system protei 97.8 0.0005 1.1E-08 64.4 14.1 102 568-675 145-253 (263)
179 KOG1130 Predicted G-alpha GTPa 97.8 0.00017 3.7E-09 68.1 10.5 134 567-700 196-343 (639)
180 PF07079 DUF1347: Protein of u 97.8 0.038 8.3E-07 53.8 45.9 89 12-103 14-106 (549)
181 PF12688 TPR_5: Tetratrico pep 97.8 0.0011 2.3E-08 53.2 13.7 90 537-628 7-101 (120)
182 PF14559 TPR_19: Tetratricopep 97.8 8E-05 1.7E-09 53.6 6.7 62 614-678 3-64 (68)
183 PF13432 TPR_16: Tetratricopep 97.8 9.2E-05 2E-09 52.7 6.7 61 572-636 3-63 (65)
184 PF14559 TPR_19: Tetratricopep 97.8 0.00012 2.5E-09 52.8 6.9 62 51-116 2-63 (68)
185 PF05843 Suf: Suppressor of fo 97.8 0.00063 1.4E-08 65.1 13.8 129 567-700 2-135 (280)
186 PRK11906 transcriptional regul 97.7 0.0015 3.3E-08 64.2 15.7 146 547-698 274-433 (458)
187 PF13414 TPR_11: TPR repeat; P 97.7 0.00019 4.1E-09 51.8 7.1 65 565-631 2-67 (69)
188 PF13525 YfiO: Outer membrane 97.7 0.007 1.5E-07 54.9 18.7 67 40-106 5-72 (203)
189 TIGR00756 PPR pentatricopeptid 97.6 9.1E-05 2E-09 44.7 4.1 33 183-215 2-34 (35)
190 COG3898 Uncharacterized membra 97.6 0.064 1.4E-06 51.1 32.2 196 358-560 84-292 (531)
191 TIGR00756 PPR pentatricopeptid 97.6 0.00013 2.8E-09 44.0 4.6 33 288-320 2-34 (35)
192 PF10037 MRP-S27: Mitochondria 97.6 0.0015 3.2E-08 65.0 13.6 117 425-541 65-183 (429)
193 COG3898 Uncharacterized membra 97.6 0.078 1.7E-06 50.6 33.1 298 393-706 84-397 (531)
194 PF13812 PPR_3: Pentatricopept 97.6 0.00012 2.6E-09 43.8 3.9 33 112-144 2-34 (34)
195 PF10037 MRP-S27: Mitochondria 97.6 0.0017 3.6E-08 64.6 13.7 122 318-439 63-186 (429)
196 PRK10866 outer membrane biogen 97.6 0.023 5E-07 52.9 20.7 66 75-141 31-99 (243)
197 PRK15331 chaperone protein Sic 97.6 0.0074 1.6E-07 50.5 15.2 93 570-665 41-133 (165)
198 PF13371 TPR_9: Tetratricopept 97.5 0.00054 1.2E-08 50.1 7.9 63 610-675 3-65 (73)
199 PRK10803 tol-pal system protei 97.5 0.0022 4.7E-08 60.1 12.9 92 605-700 146-245 (263)
200 PF13812 PPR_3: Pentatricopept 97.5 0.00025 5.3E-09 42.4 4.5 31 288-318 3-33 (34)
201 PRK11906 transcriptional regul 97.5 0.0099 2.1E-07 58.7 17.6 77 550-629 323-399 (458)
202 KOG2796 Uncharacterized conser 97.5 0.078 1.7E-06 47.7 22.9 139 499-641 180-323 (366)
203 KOG0543 FKBP-type peptidyl-pro 97.4 0.0029 6.2E-08 60.7 12.9 95 603-700 258-354 (397)
204 KOG2796 Uncharacterized conser 97.4 0.04 8.7E-07 49.4 18.7 160 513-682 166-329 (366)
205 PF13281 DUF4071: Domain of un 97.3 0.042 9.1E-07 53.6 19.8 168 536-708 146-339 (374)
206 KOG1258 mRNA processing protei 97.3 0.24 5.2E-06 50.6 34.4 181 495-682 296-485 (577)
207 KOG2041 WD40 repeat protein [G 97.3 0.27 5.8E-06 50.8 29.2 58 501-558 1026-1084(1189)
208 PF13281 DUF4071: Domain of un 97.3 0.066 1.4E-06 52.3 20.9 182 463-673 143-339 (374)
209 PRK15331 chaperone protein Sic 97.3 0.0028 6E-08 53.0 9.8 92 46-140 43-134 (165)
210 PF13371 TPR_9: Tetratricopept 97.3 0.0017 3.6E-08 47.5 7.7 62 574-639 3-64 (73)
211 KOG2041 WD40 repeat protein [G 97.3 0.31 6.7E-06 50.4 29.2 28 37-64 689-716 (1189)
212 PF13424 TPR_12: Tetratricopep 97.2 0.00043 9.4E-09 51.4 4.3 64 602-665 5-74 (78)
213 PF08579 RPM2: Mitochondrial r 97.2 0.0041 8.8E-08 47.7 9.3 29 199-227 87-115 (120)
214 PF04184 ST7: ST7 protein; In 97.2 0.023 5E-07 56.2 16.7 126 567-695 260-408 (539)
215 KOG1258 mRNA processing protei 97.2 0.31 6.7E-06 49.8 31.6 392 285-706 44-473 (577)
216 PF13525 YfiO: Outer membrane 97.2 0.11 2.5E-06 47.1 20.7 47 643-691 147-197 (203)
217 PF10300 DUF3808: Protein of u 97.2 0.027 5.9E-07 58.3 18.3 118 579-700 246-375 (468)
218 PF04840 Vps16_C: Vps16, C-ter 97.2 0.25 5.5E-06 48.0 28.6 105 254-378 180-284 (319)
219 PLN03098 LPA1 LOW PSII ACCUMUL 97.2 0.0039 8.5E-08 61.4 10.9 66 598-665 71-140 (453)
220 PF08579 RPM2: Mitochondrial r 97.1 0.005 1.1E-07 47.3 8.9 42 222-263 31-73 (120)
221 PF01535 PPR: PPR repeat; Int 97.1 0.00056 1.2E-08 39.7 3.2 29 113-141 2-30 (31)
222 PLN03098 LPA1 LOW PSII ACCUMUL 97.1 0.0044 9.4E-08 61.0 10.9 68 562-631 71-141 (453)
223 COG4105 ComL DNA uptake lipopr 97.1 0.21 4.5E-06 45.4 20.3 186 38-244 33-232 (254)
224 PF01535 PPR: PPR repeat; Int 97.1 0.00097 2.1E-08 38.7 3.7 25 289-313 3-27 (31)
225 PF03704 BTAD: Bacterial trans 97.0 0.023 5.1E-07 48.4 13.7 69 605-674 65-138 (146)
226 COG1729 Uncharacterized protei 97.0 0.017 3.6E-07 52.8 12.8 99 42-141 144-245 (262)
227 PF03704 BTAD: Bacterial trans 97.0 0.016 3.5E-07 49.5 12.4 70 78-148 64-138 (146)
228 KOG4555 TPR repeat-containing 97.0 0.013 2.9E-07 46.0 10.1 90 575-666 52-144 (175)
229 PF13424 TPR_12: Tetratricopep 96.9 0.0019 4.1E-08 47.9 4.8 65 566-630 5-74 (78)
230 PF06552 TOM20_plant: Plant sp 96.9 0.011 2.3E-07 50.1 9.4 113 582-706 7-141 (186)
231 COG0457 NrfG FOG: TPR repeat [ 96.8 0.44 9.6E-06 44.9 29.6 197 498-700 61-264 (291)
232 PF13512 TPR_18: Tetratricopep 96.8 0.03 6.5E-07 45.8 11.1 84 40-123 10-94 (142)
233 KOG1585 Protein required for f 96.7 0.29 6.3E-06 43.7 17.3 30 39-68 30-59 (308)
234 PF04840 Vps16_C: Vps16, C-ter 96.7 0.65 1.4E-05 45.2 31.2 285 6-346 2-287 (319)
235 COG1729 Uncharacterized protei 96.7 0.032 7E-07 51.0 12.1 94 568-665 144-243 (262)
236 KOG0543 FKBP-type peptidyl-pro 96.7 0.038 8.2E-07 53.3 12.9 95 567-665 258-354 (397)
237 COG4785 NlpI Lipoprotein NlpI, 96.7 0.16 3.5E-06 44.3 15.3 49 55-105 80-128 (297)
238 PF06239 ECSIT: Evolutionarily 96.6 0.017 3.6E-07 50.7 9.2 36 301-336 118-153 (228)
239 PF06239 ECSIT: Evolutionarily 96.6 0.042 9.1E-07 48.3 11.6 102 460-580 46-152 (228)
240 COG3118 Thioredoxin domain-con 96.6 0.18 3.9E-06 46.7 16.0 126 46-175 140-265 (304)
241 KOG1538 Uncharacterized conser 96.6 0.32 7E-06 49.7 18.9 92 601-703 746-848 (1081)
242 COG0457 NrfG FOG: TPR repeat [ 96.6 0.67 1.5E-05 43.6 31.6 224 441-671 38-268 (291)
243 KOG2114 Vacuolar assembly/sort 96.5 1.5 3.1E-05 47.0 28.8 181 42-242 336-516 (933)
244 COG3118 Thioredoxin domain-con 96.5 0.49 1.1E-05 44.0 18.0 122 506-631 144-265 (304)
245 PF10300 DUF3808: Protein of u 96.5 0.15 3.2E-06 53.0 16.9 84 55-140 248-334 (468)
246 PF13428 TPR_14: Tetratricopep 96.5 0.006 1.3E-07 38.9 4.3 38 569-608 4-41 (44)
247 KOG2280 Vacuolar assembly/sort 96.5 1.5 3.2E-05 46.2 31.2 87 222-311 443-532 (829)
248 KOG1538 Uncharacterized conser 96.4 0.19 4.1E-06 51.3 16.0 52 397-451 604-657 (1081)
249 COG4649 Uncharacterized protei 96.4 0.38 8.3E-06 40.4 14.9 124 51-174 69-195 (221)
250 KOG4555 TPR repeat-containing 96.3 0.25 5.3E-06 39.2 12.9 94 46-141 49-145 (175)
251 KOG1941 Acetylcholine receptor 96.3 0.084 1.8E-06 49.8 12.2 230 471-700 16-274 (518)
252 PF08631 SPO22: Meiosis protei 96.3 1.1 2.4E-05 43.0 22.3 124 16-140 5-150 (278)
253 PF13428 TPR_14: Tetratricopep 96.3 0.01 2.2E-07 37.8 4.6 40 42-83 3-42 (44)
254 PF13512 TPR_18: Tetratricopep 96.2 0.18 4E-06 41.4 12.4 52 578-629 22-74 (142)
255 COG4105 ComL DNA uptake lipopr 96.2 1 2.2E-05 41.2 20.7 56 643-700 173-232 (254)
256 KOG1941 Acetylcholine receptor 96.1 0.24 5.3E-06 46.9 14.2 128 537-664 128-273 (518)
257 KOG2610 Uncharacterized conser 96.1 0.27 5.8E-06 46.1 14.3 152 473-627 115-272 (491)
258 KOG2610 Uncharacterized conser 96.1 0.42 9.1E-06 44.9 15.4 146 577-728 114-272 (491)
259 COG2909 MalT ATP-dependent tra 95.8 3.5 7.6E-05 44.8 27.7 228 471-698 425-685 (894)
260 PF08631 SPO22: Meiosis protei 95.8 2 4.3E-05 41.4 24.9 101 533-637 86-192 (278)
261 PF13431 TPR_17: Tetratricopep 95.7 0.011 2.4E-07 34.9 2.7 32 589-622 2-33 (34)
262 PF00515 TPR_1: Tetratricopept 95.7 0.024 5.1E-07 33.6 4.2 32 638-671 2-33 (34)
263 COG4649 Uncharacterized protei 95.7 1.1 2.5E-05 37.8 15.8 132 542-673 69-203 (221)
264 KOG2396 HAT (Half-A-TPR) repea 95.7 2.8 6E-05 42.2 40.8 91 536-629 465-557 (568)
265 KOG1586 Protein required for f 95.6 1.6 3.4E-05 39.1 16.3 183 506-706 24-227 (288)
266 COG2976 Uncharacterized protei 95.6 0.93 2E-05 39.3 14.4 86 610-701 97-188 (207)
267 PF09613 HrpB1_HrpK: Bacterial 95.6 1 2.2E-05 38.0 14.3 87 575-665 19-105 (160)
268 KOG4234 TPR repeat-containing 95.5 0.5 1.1E-05 40.8 12.5 102 575-682 104-211 (271)
269 KOG2396 HAT (Half-A-TPR) repea 95.5 3.2 6.8E-05 41.8 39.5 96 634-731 456-558 (568)
270 KOG2114 Vacuolar assembly/sort 95.4 4.7 0.0001 43.4 26.3 182 5-207 332-516 (933)
271 KOG4648 Uncharacterized conser 95.4 0.089 1.9E-06 49.2 8.4 105 573-682 104-208 (536)
272 PF09205 DUF1955: Domain of un 95.3 1.2 2.5E-05 35.8 14.1 64 499-563 89-152 (161)
273 PF07719 TPR_2: Tetratricopept 95.3 0.028 6.2E-07 33.2 3.5 31 639-671 3-33 (34)
274 COG4455 ImpE Protein of avirul 95.3 0.78 1.7E-05 40.4 13.0 74 607-683 6-79 (273)
275 PF12921 ATP13: Mitochondrial 95.2 0.27 5.8E-06 40.1 9.8 48 562-609 48-95 (126)
276 PF04184 ST7: ST7 protein; In 95.2 3.1 6.8E-05 41.9 18.6 108 603-714 260-386 (539)
277 KOG1920 IkappaB kinase complex 95.0 7.8 0.00017 43.7 24.9 16 294-309 685-700 (1265)
278 KOG2280 Vacuolar assembly/sort 95.0 6.1 0.00013 42.0 34.0 104 502-625 690-793 (829)
279 KOG4234 TPR repeat-containing 94.9 0.41 8.9E-06 41.3 10.2 93 609-706 102-200 (271)
280 PF09613 HrpB1_HrpK: Bacterial 94.9 2.1 4.5E-05 36.2 14.2 86 52-141 22-107 (160)
281 smart00299 CLH Clathrin heavy 94.7 2.2 4.8E-05 35.9 14.9 124 45-192 12-136 (140)
282 KOG1550 Extracellular protein 94.7 4.5 9.7E-05 43.4 20.3 245 477-740 228-510 (552)
283 KOG1920 IkappaB kinase complex 94.7 6.3 0.00014 44.4 20.8 17 507-523 862-878 (1265)
284 PF13431 TPR_17: Tetratricopep 94.7 0.047 1E-06 32.2 3.1 32 63-96 2-33 (34)
285 PF04053 Coatomer_WDAD: Coatom 94.6 0.84 1.8E-05 46.7 13.7 129 499-661 298-426 (443)
286 COG2976 Uncharacterized protei 94.5 2.9 6.3E-05 36.4 15.8 103 642-748 94-203 (207)
287 PF10602 RPN7: 26S proteasome 94.5 0.71 1.5E-05 40.5 11.3 97 603-699 37-140 (177)
288 PF04053 Coatomer_WDAD: Coatom 94.5 0.81 1.7E-05 46.9 13.3 131 77-240 296-426 (443)
289 KOG2471 TPR repeat-containing 94.4 1.9 4.1E-05 43.0 14.8 140 573-714 213-378 (696)
290 TIGR02561 HrpB1_HrpK type III 94.4 1.9 4.1E-05 35.7 12.5 53 577-631 21-73 (153)
291 PF12921 ATP13: Mitochondrial 94.3 0.8 1.7E-05 37.3 10.4 49 283-331 49-98 (126)
292 PF13176 TPR_7: Tetratricopept 94.1 0.11 2.5E-06 31.1 4.0 26 639-664 1-26 (36)
293 COG4785 NlpI Lipoprotein NlpI, 94.1 0.9 2E-05 39.9 10.6 184 539-735 73-269 (297)
294 COG3629 DnrI DNA-binding trans 94.0 0.53 1.2E-05 44.1 9.9 77 568-646 155-236 (280)
295 KOG1585 Protein required for f 93.9 4.8 0.0001 36.4 18.7 207 464-697 34-252 (308)
296 PF10602 RPN7: 26S proteasome 93.9 1.3 2.7E-05 39.0 11.7 99 76-174 36-141 (177)
297 COG3629 DnrI DNA-binding trans 93.6 0.74 1.6E-05 43.2 10.2 78 77-155 154-236 (280)
298 KOG1586 Protein required for f 93.6 5.2 0.00011 36.0 20.4 101 570-672 117-228 (288)
299 PF13176 TPR_7: Tetratricopept 93.5 0.17 3.6E-06 30.4 4.0 26 604-629 1-26 (36)
300 PF10345 Cohesin_load: Cohesin 93.5 14 0.0003 40.4 39.5 150 58-208 39-206 (608)
301 smart00299 CLH Clathrin heavy 93.5 4.1 8.8E-05 34.2 15.9 41 467-508 13-53 (140)
302 KOG1550 Extracellular protein 93.4 13 0.00029 39.9 24.3 76 652-733 454-539 (552)
303 PF13181 TPR_8: Tetratricopept 93.3 0.13 2.9E-06 30.3 3.3 30 639-670 3-32 (34)
304 PF02259 FAT: FAT domain; Int 93.0 11 0.00024 37.9 22.8 65 566-630 146-212 (352)
305 PF06552 TOM20_plant: Plant sp 93.0 1 2.3E-05 38.5 9.1 77 582-668 51-138 (186)
306 KOG4648 Uncharacterized conser 93.0 0.51 1.1E-05 44.4 7.9 95 80-176 101-195 (536)
307 TIGR02561 HrpB1_HrpK type III 92.9 4.8 0.0001 33.4 13.0 52 52-105 22-73 (153)
308 PF09205 DUF1955: Domain of un 92.7 4.5 9.7E-05 32.6 14.3 137 16-176 14-150 (161)
309 PF07035 Mic1: Colon cancer-as 92.4 6.5 0.00014 33.8 15.4 99 169-277 17-115 (167)
310 KOG0376 Serine-threonine phosp 92.2 0.31 6.7E-06 48.4 5.8 104 573-682 11-115 (476)
311 KOG1464 COP9 signalosome, subu 92.1 9.6 0.00021 35.0 16.7 158 52-209 39-219 (440)
312 COG2909 MalT ATP-dependent tra 92.0 22 0.00048 39.0 25.5 223 506-728 425-684 (894)
313 KOG2062 26S proteasome regulat 91.9 20 0.00043 38.3 37.4 254 401-665 367-634 (929)
314 PF13170 DUF4003: Protein of u 91.8 13 0.00028 36.0 17.6 148 514-663 80-243 (297)
315 PRK15180 Vi polysaccharide bio 91.7 0.82 1.8E-05 45.2 8.0 130 576-711 299-428 (831)
316 PRK12798 chemotaxis protein; R 91.7 15 0.00033 36.6 19.7 155 509-665 125-285 (421)
317 KOG1308 Hsp70-interacting prot 91.5 0.14 3E-06 48.2 2.6 118 577-700 125-243 (377)
318 KOG3941 Intermediate in Toll s 91.4 1.7 3.6E-05 40.0 9.0 34 513-546 140-173 (406)
319 PF00515 TPR_1: Tetratricopept 91.3 0.57 1.2E-05 27.5 4.4 30 42-71 3-32 (34)
320 PF07719 TPR_2: Tetratricopept 91.3 0.57 1.2E-05 27.4 4.4 30 42-71 3-32 (34)
321 KOG0276 Vesicle coat complex C 91.1 4.2 9E-05 41.9 12.3 100 87-207 648-747 (794)
322 COG1747 Uncharacterized N-term 90.7 21 0.00046 36.4 24.7 165 460-631 65-234 (711)
323 KOG4642 Chaperone-dependent E3 90.7 5 0.00011 36.2 11.0 115 541-659 20-139 (284)
324 PF14853 Fis1_TPR_C: Fis1 C-te 90.6 1.2 2.6E-05 29.5 5.6 40 640-681 4-43 (53)
325 PF02259 FAT: FAT domain; Int 90.1 22 0.00049 35.7 24.6 65 495-559 145-212 (352)
326 PF09986 DUF2225: Uncharacteri 90.0 3.8 8.2E-05 37.3 10.3 66 637-702 118-195 (214)
327 KOG3941 Intermediate in Toll s 89.9 2.9 6.4E-05 38.5 9.2 104 390-512 66-174 (406)
328 KOG1308 Hsp70-interacting prot 89.9 0.48 1E-05 44.8 4.5 118 543-665 126-243 (377)
329 COG0790 FOG: TPR repeat, SEL1 89.7 21 0.00046 34.7 22.7 46 619-667 172-221 (292)
330 COG1747 Uncharacterized N-term 89.2 28 0.00061 35.5 23.8 180 109-296 64-249 (711)
331 PF10345 Cohesin_load: Cohesin 89.0 39 0.00085 37.0 39.3 188 20-208 37-252 (608)
332 KOG3364 Membrane protein invol 89.0 9.7 0.00021 31.0 10.3 73 601-676 31-108 (149)
333 cd00923 Cyt_c_Oxidase_Va Cytoc 88.9 2.8 6.1E-05 31.5 6.8 48 548-595 24-71 (103)
334 PF02284 COX5A: Cytochrome c o 88.8 2.9 6.2E-05 31.9 6.9 59 549-609 28-86 (108)
335 KOG0686 COP9 signalosome, subu 88.2 14 0.00031 36.3 12.9 160 567-730 151-331 (466)
336 PF13374 TPR_10: Tetratricopep 88.2 1.1 2.5E-05 27.7 4.2 28 638-665 3-30 (42)
337 PF13174 TPR_6: Tetratricopept 88.2 0.8 1.7E-05 26.5 3.3 26 606-631 4-29 (33)
338 PF08424 NRDE-2: NRDE-2, neces 88.1 28 0.00061 34.3 15.7 81 56-139 47-130 (321)
339 KOG4642 Chaperone-dependent E3 87.8 9.3 0.0002 34.6 10.5 120 505-627 19-142 (284)
340 KOG4507 Uncharacterized conser 87.7 3.1 6.8E-05 42.6 8.6 116 527-646 603-719 (886)
341 KOG2066 Vacuolar assembly/sort 87.5 46 0.001 36.1 26.6 73 50-126 366-438 (846)
342 KOG4570 Uncharacterized conser 86.9 3.1 6.8E-05 39.0 7.6 103 176-280 59-164 (418)
343 PF13374 TPR_10: Tetratricopep 86.9 1.5 3.2E-05 27.2 4.1 28 603-630 3-30 (42)
344 PF13929 mRNA_stabil: mRNA sta 86.8 27 0.00058 33.0 13.4 165 21-191 113-288 (292)
345 PF13174 TPR_6: Tetratricopept 86.7 1 2.3E-05 26.0 3.2 25 641-665 4-28 (33)
346 PF08424 NRDE-2: NRDE-2, neces 86.6 35 0.00075 33.7 17.3 122 582-706 47-189 (321)
347 COG4455 ImpE Protein of avirul 86.3 15 0.00033 32.8 10.9 121 571-705 6-138 (273)
348 PF09986 DUF2225: Uncharacteri 85.9 17 0.00037 33.1 11.8 66 603-668 119-196 (214)
349 PF13181 TPR_8: Tetratricopept 85.9 2.1 4.5E-05 25.0 4.2 29 603-631 2-30 (34)
350 PRK09687 putative lyase; Provi 85.3 36 0.00079 32.7 26.4 80 355-441 141-221 (280)
351 KOG2471 TPR repeat-containing 85.3 46 0.001 33.9 27.3 275 263-543 29-381 (696)
352 PF13170 DUF4003: Protein of u 85.0 39 0.00084 32.8 21.0 23 409-431 80-102 (297)
353 COG0790 FOG: TPR repeat, SEL1 84.8 40 0.00087 32.7 24.0 129 512-651 93-236 (292)
354 smart00028 TPR Tetratricopepti 84.7 1.8 3.9E-05 24.4 3.6 26 640-665 4-29 (34)
355 KOG0276 Vesicle coat complex C 84.4 22 0.00047 37.1 12.5 150 52-242 598-747 (794)
356 COG3947 Response regulator con 84.4 37 0.0008 32.0 16.8 59 569-629 282-340 (361)
357 COG5159 RPN6 26S proteasome re 84.4 36 0.00078 31.8 19.0 181 570-750 129-332 (421)
358 PRK11619 lytic murein transgly 83.7 74 0.0016 35.0 40.2 143 42-196 36-178 (644)
359 KOG4279 Serine/threonine prote 83.6 70 0.0015 34.6 17.8 199 445-678 182-405 (1226)
360 KOG0545 Aryl-hydrocarbon recep 83.6 35 0.00076 31.2 12.0 67 603-672 231-297 (329)
361 PF04910 Tcf25: Transcriptiona 83.5 52 0.0011 33.0 16.2 65 600-664 98-166 (360)
362 TIGR03504 FimV_Cterm FimV C-te 83.5 2.1 4.6E-05 27.0 3.4 23 643-665 5-27 (44)
363 cd00923 Cyt_c_Oxidase_Va Cytoc 83.4 11 0.00023 28.6 7.4 62 618-680 23-84 (103)
364 KOG4507 Uncharacterized conser 82.8 6.8 0.00015 40.3 8.4 85 53-139 620-704 (886)
365 PF07721 TPR_4: Tetratricopept 82.6 2.1 4.6E-05 23.2 2.9 19 607-625 6-24 (26)
366 PF07575 Nucleopor_Nup85: Nup8 82.6 68 0.0015 34.8 16.7 57 324-382 408-464 (566)
367 PF02284 COX5A: Cytochrome c o 82.3 20 0.00043 27.5 8.6 47 514-560 28-74 (108)
368 PF11207 DUF2989: Protein of u 82.1 11 0.00024 33.3 8.5 72 549-621 124-197 (203)
369 KOG3364 Membrane protein invol 81.9 27 0.00058 28.6 9.9 70 634-706 29-103 (149)
370 PF11207 DUF2989: Protein of u 81.5 22 0.00048 31.5 10.0 72 198-270 123-197 (203)
371 KOG1464 COP9 signalosome, subu 80.6 48 0.001 30.7 18.5 93 464-557 148-257 (440)
372 KOG0551 Hsp90 co-chaperone CNS 79.8 43 0.00094 32.2 11.8 94 605-700 84-181 (390)
373 PF07035 Mic1: Colon cancer-as 78.7 43 0.00093 29.0 15.4 23 209-231 22-44 (167)
374 PF07721 TPR_4: Tetratricopept 78.6 3.3 7.1E-05 22.5 2.8 19 81-99 6-24 (26)
375 PF13929 mRNA_stabil: mRNA sta 78.1 64 0.0014 30.6 15.8 136 91-226 143-288 (292)
376 PF04097 Nic96: Nup93/Nic96; 78.0 1.1E+02 0.0025 33.5 21.1 41 82-123 117-157 (613)
377 PF14561 TPR_20: Tetratricopep 78.0 28 0.0006 26.4 8.9 32 598-629 18-49 (90)
378 PF10579 Rapsyn_N: Rapsyn N-te 77.5 7 0.00015 28.3 4.8 49 614-662 18-68 (80)
379 smart00028 TPR Tetratricopepti 77.0 5.3 0.00011 22.2 3.8 27 604-630 3-29 (34)
380 PF04910 Tcf25: Transcriptiona 76.9 86 0.0019 31.5 17.8 91 571-665 108-221 (360)
381 KOG0376 Serine-threonine phosp 76.8 5.3 0.00011 40.2 5.5 105 47-156 11-115 (476)
382 PF10579 Rapsyn_N: Rapsyn N-te 76.7 6.7 0.00015 28.4 4.5 45 52-98 18-65 (80)
383 PF07163 Pex26: Pex26 protein; 76.7 36 0.00078 31.9 10.2 87 538-625 90-181 (309)
384 KOG2062 26S proteasome regulat 76.6 1.2E+02 0.0026 33.0 39.1 123 574-700 509-634 (929)
385 COG3947 Response regulator con 76.0 12 0.00026 35.0 7.0 62 77-139 280-341 (361)
386 PF00244 14-3-3: 14-3-3 protei 75.9 64 0.0014 30.1 12.1 48 653-700 142-197 (236)
387 PF14561 TPR_20: Tetratricopep 75.5 33 0.00071 26.0 8.8 38 64-103 12-49 (90)
388 PF07575 Nucleopor_Nup85: Nup8 75.1 1.3E+02 0.0028 32.7 18.6 128 566-712 405-536 (566)
389 PRK10941 hypothetical protein; 75.0 24 0.00053 33.4 9.2 60 570-631 185-244 (269)
390 COG5187 RPN7 26S proteasome re 74.7 77 0.0017 29.9 12.4 100 565-664 114-219 (412)
391 KOG4570 Uncharacterized conser 74.3 70 0.0015 30.6 11.5 48 371-418 115-162 (418)
392 KOG0545 Aryl-hydrocarbon recep 73.7 73 0.0016 29.3 11.0 65 568-636 232-296 (329)
393 PF07163 Pex26: Pex26 protein; 73.0 85 0.0018 29.6 12.2 89 151-239 88-181 (309)
394 KOG4077 Cytochrome c oxidase, 72.8 23 0.00049 28.4 6.8 46 550-595 68-113 (149)
395 KOG0687 26S proteasome regulat 72.3 96 0.0021 29.9 13.4 24 569-592 107-130 (393)
396 PF08311 Mad3_BUB1_I: Mad3/BUB 72.1 7.4 0.00016 31.8 4.5 44 620-663 81-125 (126)
397 PF14853 Fis1_TPR_C: Fis1 C-te 71.4 12 0.00026 24.8 4.5 31 674-706 3-33 (53)
398 KOG0890 Protein kinase of the 70.9 3E+02 0.0064 35.0 35.2 146 16-170 1395-1542(2382)
399 KOG0991 Replication factor C, 70.8 56 0.0012 29.7 9.7 36 85-121 247-282 (333)
400 KOG1497 COP9 signalosome, subu 70.5 1E+02 0.0023 29.6 15.7 151 42-193 105-269 (399)
401 PRK11619 lytic murein transgly 69.8 1.8E+02 0.0039 32.1 38.5 443 16-498 45-513 (644)
402 TIGR03504 FimV_Cterm FimV C-te 69.5 11 0.00023 23.9 3.7 21 47-67 6-26 (44)
403 COG4976 Predicted methyltransf 68.3 9.5 0.00021 34.2 4.5 53 577-631 6-58 (287)
404 PF00637 Clathrin: Region in C 68.0 3 6.5E-05 35.2 1.5 54 117-170 13-66 (143)
405 PF00637 Clathrin: Region in C 67.7 3.3 7.3E-05 34.9 1.8 53 223-275 14-66 (143)
406 KOG1497 COP9 signalosome, subu 66.5 1.3E+02 0.0027 29.0 14.0 95 9-103 108-211 (399)
407 PF09670 Cas_Cas02710: CRISPR- 66.3 66 0.0014 32.6 10.8 51 543-594 143-197 (379)
408 KOG0890 Protein kinase of the 65.9 3.7E+02 0.008 34.2 39.5 321 45-385 1388-1731(2382)
409 PRK10941 hypothetical protein; 65.5 77 0.0017 30.1 10.3 67 535-604 185-251 (269)
410 TIGR02508 type_III_yscG type I 65.3 61 0.0013 24.9 9.4 53 83-141 46-98 (115)
411 PF09797 NatB_MDM20: N-acetylt 65.2 69 0.0015 32.4 10.9 147 20-170 151-310 (365)
412 PRK12798 chemotaxis protein; R 64.9 1.6E+02 0.0035 29.7 21.8 198 474-675 125-333 (421)
413 KOG0551 Hsp90 co-chaperone CNS 64.5 1.1E+02 0.0024 29.7 10.7 94 533-628 83-179 (390)
414 KOG2063 Vacuolar assembly/sort 64.4 2.6E+02 0.0056 31.9 18.8 26 394-419 507-532 (877)
415 PRK09687 putative lyase; Provi 63.6 1.4E+02 0.0031 28.7 29.7 17 250-266 205-221 (280)
416 smart00386 HAT HAT (Half-A-TPR 63.3 18 0.00039 20.3 3.9 14 582-595 3-16 (33)
417 KOG1463 26S proteasome regulat 62.2 1.6E+02 0.0035 28.7 19.5 181 570-750 132-334 (411)
418 PF12862 Apc5: Anaphase-promot 62.0 47 0.001 25.4 7.0 18 683-700 52-69 (94)
419 KOG2066 Vacuolar assembly/sort 61.9 2.5E+02 0.0055 30.9 30.8 73 189-267 364-439 (846)
420 KOG2908 26S proteasome regulat 61.6 95 0.0021 30.1 9.8 57 538-594 82-143 (380)
421 PF04190 DUF410: Protein of un 61.2 1.5E+02 0.0033 28.1 16.8 82 600-701 88-170 (260)
422 PF12862 Apc5: Anaphase-promot 60.9 35 0.00075 26.1 6.1 23 643-665 47-69 (94)
423 smart00777 Mad3_BUB1_I Mad3/BU 60.2 43 0.00093 27.3 6.6 39 622-660 83-122 (125)
424 PF09477 Type_III_YscG: Bacter 59.8 83 0.0018 24.6 9.8 79 19-106 21-99 (116)
425 KOG2300 Uncharacterized conser 59.4 2.2E+02 0.0047 29.4 36.0 147 543-697 335-510 (629)
426 KOG0128 RNA-binding protein SA 58.2 3E+02 0.0065 30.6 33.5 80 614-694 474-556 (881)
427 PF11663 Toxin_YhaV: Toxin wit 57.9 9.2 0.0002 31.0 2.4 27 686-712 109-135 (140)
428 PF09670 Cas_Cas02710: CRISPR- 57.9 1.7E+02 0.0036 29.8 11.9 56 574-631 139-198 (379)
429 PF04097 Nic96: Nup93/Nic96; 57.5 3E+02 0.0065 30.3 25.4 44 220-264 115-158 (613)
430 KOG4077 Cytochrome c oxidase, 57.1 88 0.0019 25.3 7.4 45 621-665 68-112 (149)
431 PF11846 DUF3366: Domain of un 56.3 35 0.00076 30.6 6.3 31 75-105 143-173 (193)
432 KOG0687 26S proteasome regulat 54.9 2.1E+02 0.0045 27.8 13.3 86 56-141 84-174 (393)
433 PF11846 DUF3366: Domain of un 54.4 44 0.00095 30.0 6.6 46 621-670 130-175 (193)
434 COG5191 Uncharacterized conser 53.9 38 0.00082 32.2 5.9 65 563-629 104-169 (435)
435 KOG4521 Nuclear pore complex, 53.4 4.3E+02 0.0093 30.9 15.3 129 603-738 984-1138(1480)
436 KOG0403 Neoplastic transformat 53.3 2.6E+02 0.0057 28.4 30.2 59 536-595 514-572 (645)
437 PF09477 Type_III_YscG: Bacter 53.2 1.1E+02 0.0024 24.0 9.1 79 55-141 21-99 (116)
438 PF08311 Mad3_BUB1_I: Mad3/BUB 52.7 1.3E+02 0.0028 24.7 9.9 44 584-627 81-124 (126)
439 PF07720 TPR_3: Tetratricopept 52.6 42 0.0009 20.1 4.0 15 645-659 9-23 (36)
440 KOG2422 Uncharacterized conser 52.1 3.2E+02 0.0069 29.0 18.0 119 508-628 250-404 (665)
441 KOG2908 26S proteasome regulat 51.5 2.4E+02 0.0053 27.5 11.7 91 572-665 81-182 (380)
442 PF14689 SPOB_a: Sensor_kinase 50.3 46 0.00099 23.0 4.6 26 639-664 25-50 (62)
443 KOG4279 Serine/threonine prote 48.9 4E+02 0.0087 29.3 14.7 189 513-708 180-400 (1226)
444 PF15297 CKAP2_C: Cytoskeleton 48.5 1.9E+02 0.0042 28.4 9.8 63 618-682 119-185 (353)
445 KOG3807 Predicted membrane pro 48.2 2.7E+02 0.0058 27.0 17.2 119 536-677 280-400 (556)
446 KOG0991 Replication factor C, 48.1 2.3E+02 0.0049 26.1 12.4 103 543-672 171-273 (333)
447 KOG2422 Uncharacterized conser 47.8 3.7E+02 0.0081 28.6 16.8 173 471-648 248-461 (665)
448 cd00280 TRFH Telomeric Repeat 47.7 1.8E+02 0.0038 25.6 8.4 20 84-103 119-138 (200)
449 PF14689 SPOB_a: Sensor_kinase 47.5 55 0.0012 22.7 4.6 30 565-594 22-51 (62)
450 PHA02875 ankyrin repeat protei 47.2 3.3E+02 0.0071 28.1 12.7 7 226-232 42-48 (413)
451 PF10255 Paf67: RNA polymerase 46.7 3.4E+02 0.0073 27.8 11.8 62 42-103 124-191 (404)
452 KOG4814 Uncharacterized conser 46.7 1.7E+02 0.0037 31.2 9.7 87 542-631 365-457 (872)
453 PRK15180 Vi polysaccharide bio 46.2 3.5E+02 0.0076 27.8 30.3 54 226-280 333-386 (831)
454 PHA02875 ankyrin repeat protei 46.2 3.5E+02 0.0077 27.9 18.5 76 156-239 9-88 (413)
455 PF02184 HAT: HAT (Half-A-TPR) 46.0 49 0.0011 19.2 3.4 13 653-665 3-15 (32)
456 COG4259 Uncharacterized protei 45.6 1.4E+02 0.003 23.0 6.7 52 623-676 58-109 (121)
457 COG4259 Uncharacterized protei 45.1 1.4E+02 0.003 22.9 6.6 46 550-595 56-101 (121)
458 PRK07003 DNA polymerase III su 44.3 5.1E+02 0.011 29.2 13.9 46 582-629 180-225 (830)
459 KOG3824 Huntingtin interacting 44.3 88 0.0019 29.8 6.7 57 576-636 126-182 (472)
460 PF11663 Toxin_YhaV: Toxin wit 42.6 30 0.00064 28.3 3.0 39 707-745 94-137 (140)
461 COG0735 Fur Fe2+/Zn2+ uptake r 42.3 84 0.0018 26.5 5.9 53 694-746 8-65 (145)
462 COG5191 Uncharacterized conser 42.3 59 0.0013 31.0 5.3 74 598-674 103-177 (435)
463 PF04190 DUF410: Protein of un 41.8 3.1E+02 0.0068 26.0 18.9 27 564-590 88-114 (260)
464 PF12968 DUF3856: Domain of Un 41.0 1.9E+02 0.0041 23.3 11.3 87 614-700 21-128 (144)
465 KOG2034 Vacuolar sorting prote 40.8 5.8E+02 0.013 28.8 26.4 319 84-452 366-687 (911)
466 PF11817 Foie-gras_1: Foie gra 40.3 1.2E+02 0.0027 28.4 7.5 24 639-662 220-243 (247)
467 KOG0292 Vesicle coat complex C 40.2 94 0.002 34.4 7.0 131 575-733 652-783 (1202)
468 COG4976 Predicted methyltransf 40.0 54 0.0012 29.8 4.5 61 540-603 4-64 (287)
469 KOG2561 Adaptor protein NUB1, 39.9 2.8E+02 0.006 28.2 9.5 33 668-700 259-295 (568)
470 PF11817 Foie-gras_1: Foie gra 39.5 1.3E+02 0.0028 28.4 7.4 78 58-138 163-245 (247)
471 KOG1839 Uncharacterized protei 39.5 4E+02 0.0087 31.6 12.0 131 530-660 972-1122(1236)
472 KOG0292 Vesicle coat complex C 39.0 1E+02 0.0022 34.2 7.0 156 502-700 626-781 (1202)
473 KOG1839 Uncharacterized protei 38.5 2.4E+02 0.0053 33.2 10.2 129 537-665 938-1085(1236)
474 KOG0128 RNA-binding protein SA 38.3 6.2E+02 0.013 28.4 36.5 83 512-595 442-526 (881)
475 KOG4521 Nuclear pore complex, 37.9 7.4E+02 0.016 29.2 14.7 117 78-197 922-1070(1480)
476 KOG4814 Uncharacterized conser 37.8 2.4E+02 0.0051 30.3 9.1 96 498-596 357-458 (872)
477 PF05944 Phage_term_smal: Phag 37.1 2.4E+02 0.0052 23.3 7.6 97 62-165 35-132 (132)
478 COG5108 RPO41 Mitochondrial DN 37.0 3E+02 0.0065 29.7 9.7 91 326-419 33-131 (1117)
479 PF10255 Paf67: RNA polymerase 36.9 63 0.0014 32.7 5.0 60 533-592 124-190 (404)
480 TIGR02508 type_III_yscG type I 36.6 2E+02 0.0044 22.3 9.2 79 126-211 20-98 (115)
481 KOG1498 26S proteasome regulat 35.9 4.7E+02 0.01 26.3 16.0 169 439-632 25-242 (439)
482 KOG3824 Huntingtin interacting 35.8 91 0.002 29.7 5.4 63 541-606 126-188 (472)
483 PF11838 ERAP1_C: ERAP1-like C 35.4 4.4E+02 0.0096 25.9 12.8 109 92-205 146-261 (324)
484 PF15297 CKAP2_C: Cytoskeleton 35.3 4.2E+02 0.0092 26.2 9.9 64 512-577 119-186 (353)
485 PRK08691 DNA polymerase III su 35.1 5.5E+02 0.012 28.6 11.8 30 676-706 250-279 (709)
486 PF02607 B12-binding_2: B12 bi 34.1 78 0.0017 23.0 4.1 40 715-754 13-54 (79)
487 COG2912 Uncharacterized conser 33.9 2E+02 0.0044 27.2 7.4 55 574-630 189-243 (269)
488 cd02680 MIT_calpain7_2 MIT: do 33.7 90 0.002 22.7 4.1 16 615-630 19-34 (75)
489 cd08819 CARD_MDA5_2 Caspase ac 33.7 2.1E+02 0.0045 21.6 6.5 69 129-203 20-88 (88)
490 PF10373 EST1_DNA_bind: Est1 D 33.4 1.7E+02 0.0037 28.0 7.6 62 585-649 1-62 (278)
491 PF13762 MNE1: Mitochondrial s 33.4 3E+02 0.0064 23.3 10.0 79 185-263 43-127 (145)
492 PF10516 SHNi-TPR: SHNi-TPR; 33.3 1.1E+02 0.0024 18.6 3.8 25 605-629 4-28 (38)
493 PF13934 ELYS: Nuclear pore co 33.0 4E+02 0.0087 24.7 11.8 122 78-213 80-201 (226)
494 PF11848 DUF3368: Domain of un 33.0 1.4E+02 0.003 19.3 5.2 32 122-153 13-44 (48)
495 KOG2582 COP9 signalosome, subu 33.0 5.1E+02 0.011 25.8 15.4 251 389-667 73-346 (422)
496 smart00777 Mad3_BUB1_I Mad3/BU 32.9 2.8E+02 0.006 22.7 9.1 44 583-626 80-123 (125)
497 PF06957 COPI_C: Coatomer (COP 32.8 2.4E+02 0.0053 28.9 8.3 19 47-65 125-143 (422)
498 PRK14956 DNA polymerase III su 32.4 6E+02 0.013 26.8 11.2 92 2-117 197-289 (484)
499 KOG2581 26S proteasome regulat 32.3 5.5E+02 0.012 26.0 11.9 147 527-675 120-283 (493)
500 COG0735 Fur Fe2+/Zn2+ uptake r 32.2 2.8E+02 0.006 23.5 7.5 60 205-265 10-69 (145)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.7e-82 Score=708.45 Aligned_cols=707 Identities=20% Similarity=0.230 Sum_probs=663.6
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Q 004362 7 PKHVAAVVKHQKNPLTALEMFNSVKREDGFKHTLLTYKYMIDKLGFHGNFEEMENLLLEMRMDVDDSLLEGVHIGVMRNY 86 (759)
Q Consensus 7 ~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 86 (759)
+..+-..+.+.|++++|+++|+.+.. .|..|+..+|..++..+.+.+.++.|..++..+.+.++. .+..+++.++..|
T Consensus 54 ~n~~i~~l~~~g~~~~A~~l~~~m~~-~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~n~li~~~ 131 (857)
T PLN03077 54 SNSQLRALCSHGQLEQALKLLESMQE-LRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPS-LGVRLGNAMLSMF 131 (857)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHh-cCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCC-CCchHHHHHHHHH
Confidence 34455556689999999999999654 578899999999999999999999999999999988754 3567889999999
Q ss_pred HhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHH
Q 004362 87 GRRGKVQEAVDVFERMDFYNCEPTVLSYNTIMNILVEYGYFSQVHKVYMRMRNKGIVPDVYTFVIRIKSFCRTRRPHVAL 166 (759)
Q Consensus 87 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 166 (759)
.+.|+++.|.++|+.|. +||+.+|+.++.+|.+.|++++|+++|++|...|+.||..||+.++++|+..++...+.
T Consensus 132 ~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~ 207 (857)
T PLN03077 132 VRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGR 207 (857)
T ss_pred HhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHH
Confidence 99999999999999998 68999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhchhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCC
Q 004362 167 RLLKNMPSQGFEPNAVAYCTLIAGFYEENHNVEAYELFDEMLGMGISPDIATFNKLIHTLCKKGNVRESEKLFNKVLKRG 246 (759)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 246 (759)
+++..+.+.|+.|+..++++++.+|++.|++++|..+|++|. .||..+|+.++.+|++.|++++|.++|++|...|
T Consensus 208 ~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g 283 (857)
T PLN03077 208 EVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELS 283 (857)
T ss_pred HHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999996 4689999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhcHHH
Q 004362 247 VSPNLFTFNMFIQGLCRKGAISEAISLLDSLGREDLTPDVVTYNTLMCGLCKNSKVVEAEYYLHKMVNEGLEPDGFSYNA 326 (759)
Q Consensus 247 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 326 (759)
+.||..+|+.++.++++.|+.+.+.+++..+.+.|+.||..+|++++.+|++.|++++|.++|++|. .||..+|+.
T Consensus 284 ~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~ 359 (857)
T PLN03077 284 VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTA 359 (857)
T ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999986 578999999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC
Q 004362 327 VIDGYCKAGMISSADKILNDAIFKGFVPDEFTYCSLINGLCQDGDVDRAMAVYVKALEKGLKPSIVLYNTLIKGLSQQGL 406 (759)
Q Consensus 327 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 406 (759)
++.+|++.|++++|.++|++|...|+.||..+|+.++.+|++.|+++.|.++++.+.+.|+.|+..+++.|+.+|.+.|+
T Consensus 360 li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~ 439 (857)
T PLN03077 360 MISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKC 439 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 004362 407 ILQALQLMNEMSESGCCPDMWTYNIVINGLCKMGCVSDANNLVNDAISKGYIPDIFTFNTLIDGYCKQLKMEIAIEILNT 486 (759)
Q Consensus 407 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 486 (759)
+++|.++|++|.+ +|..+|+.++.+|++.|+.++|..+|++|.. +..||..+|+.++.+|++.|+.+.+.+++..
T Consensus 440 ~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~ 514 (857)
T PLN03077 440 IDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAH 514 (857)
T ss_pred HHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHH
Confidence 9999999999875 5888999999999999999999999999986 5899999999999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccH
Q 004362 487 MWSHGVTPDVITYNSLLNGLCKAAKSEDVMETFKTMIEKRCVPNIITYSILGESLCKAHKITEAFNLLEEMENKGLTLDT 566 (759)
Q Consensus 487 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 566 (759)
+.+.|+.++..++++++.+|++.|+.++|.++|+.+ .||..+|+.++.+|++.|+.++|.++|++|.+.|+.||.
T Consensus 515 ~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~ 589 (857)
T PLN03077 515 VLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE 589 (857)
T ss_pred HHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc
Confidence 999999999999999999999999999999999987 579999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 004362 567 VAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDS 646 (759)
Q Consensus 567 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 646 (759)
.+|..++.+|.+.|++++|.++|+.|.+..+..|+..+|+.++.+|.+.|++++|.+++++| .+.||..+|.+|+.+
T Consensus 590 ~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m---~~~pd~~~~~aLl~a 666 (857)
T PLN03077 590 VTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGALLNA 666 (857)
T ss_pred ccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC---CCCCCHHHHHHHHHH
Confidence 99999999999999999999999999977788899999999999999999999999999998 478999999999999
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCcHHHHHHHHHHHHHCCCCCchHHHHHhc---------cc
Q 004362 647 FCKTGGINSGYCLLLENIDKGFIPSLSTIGRVINCL-CVDHRVHEAVGFVHLMVQKGIVPEVVNTIFEA---------DK 716 (759)
Q Consensus 647 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~---------~~ 716 (759)
|...|+.+.|....+++++ +.|++..++.++.+. ...|+|++|.++.+.|.++|++++..++|++. ..
T Consensus 667 c~~~~~~e~~e~~a~~l~~--l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d 744 (857)
T PLN03077 667 CRIHRHVELGELAAQHIFE--LDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDD 744 (857)
T ss_pred HHHcCChHHHHHHHHHHHh--hCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCC
Confidence 9999999999999999999 899888887776655 78999999999999999999999999998875 22
Q ss_pred cccccchH-------HHHHHHhcCCCchHHHHH
Q 004362 717 REVASPKI-------VVEDLLKKSHITYYAYEL 742 (759)
Q Consensus 717 ~~~~~a~~-------~~~~~~~~~~~~~~~~~~ 742 (759)
..+.+..+ +.++|.+.||.|++.+.+
T Consensus 745 ~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~ 777 (857)
T PLN03077 745 ESHPQIKEINTVLEGFYEKMKASGLAGSESSSM 777 (857)
T ss_pred CCCcchHHHHHHHHHHHHHHHhCCcCCCcchhc
Confidence 23334443 445688899999987643
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.5e-79 Score=684.72 Aligned_cols=655 Identities=20% Similarity=0.269 Sum_probs=628.2
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004362 75 LEGVHIGVMRNYGRRGKVQEAVDVFERMDFYNCEPTVLSYNTIMNILVEYGYFSQVHKVYMRMRNKGIVPDVYTFVIRIK 154 (759)
Q Consensus 75 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 154 (759)
+...++.++..+.+.|++++|..+|+.|...|.+|+..+|..++.+|.+.+.++.+.+++..+.+.+..++...++.++.
T Consensus 50 ~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~ 129 (857)
T PLN03077 50 STHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLS 129 (857)
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHH
Confidence 66789999999999999999999999999999999999999999999999999999999999999998899999999999
Q ss_pred HHHccCChhhHHHHHhhchhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhH
Q 004362 155 SFCRTRRPHVALRLLKNMPSQGFEPNAVAYCTLIAGFYEENHNVEAYELFDEMLGMGISPDIATFNKLIHTLCKKGNVRE 234 (759)
Q Consensus 155 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 234 (759)
.|++.|+.+.|.++|++|.. ||..+|+++|.+|.+.|++++|+++|++|...|+.||..||+.++.+|+..+++..
T Consensus 130 ~~~~~g~~~~A~~~f~~m~~----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~ 205 (857)
T PLN03077 130 MFVRFGELVHAWYVFGKMPE----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLAR 205 (857)
T ss_pred HHHhCCChHHHHHHHhcCCC----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhh
Confidence 99999999999999999974 67999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHH
Q 004362 235 SEKLFNKVLKRGVSPNLFTFNMFIQGLCRKGAISEAISLLDSLGREDLTPDVVTYNTLMCGLCKNSKVVEAEYYLHKMVN 314 (759)
Q Consensus 235 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 314 (759)
+.+++..+.+.|+.||..+++.++.+|++.|+++.|.++|++|. .||..+|++++.+|++.|++++|.++|++|..
T Consensus 206 ~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~ 281 (857)
T PLN03077 206 GREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRE 281 (857)
T ss_pred HHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998 78999999999999999999999999999999
Q ss_pred CCCCCChhcHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhH
Q 004362 315 EGLEPDGFSYNAVIDGYCKAGMISSADKILNDAIFKGFVPDEFTYCSLINGLCQDGDVDRAMAVYVKALEKGLKPSIVLY 394 (759)
Q Consensus 315 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 394 (759)
.|+.||..||+.++.+|++.|+++.+.+++..+.+.|+.||..+|+.++.+|++.|++++|.++|++|.. ||..+|
T Consensus 282 ~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~ 357 (857)
T PLN03077 282 LSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSW 357 (857)
T ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999863 689999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc
Q 004362 395 NTLIKGLSQQGLILQALQLMNEMSESGCCPDMWTYNIVINGLCKMGCVSDANNLVNDAISKGYIPDIFTFNTLIDGYCKQ 474 (759)
Q Consensus 395 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 474 (759)
+.++.+|.+.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.|+..+++.|+.+|++.
T Consensus 358 n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~ 437 (857)
T PLN03077 358 TAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKC 437 (857)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHH
Q 004362 475 LKMEIAIEILNTMWSHGVTPDVITYNSLLNGLCKAAKSEDVMETFKTMIEKRCVPNIITYSILGESLCKAHKITEAFNLL 554 (759)
Q Consensus 475 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 554 (759)
|++++|.++|++|.+ +|..+|+.++.+|++.|+.++|+.+|++|.. ++.||..||..++.+|++.|+.+.+.+++
T Consensus 438 g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~ 512 (857)
T PLN03077 438 KCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIH 512 (857)
T ss_pred CCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHH
Confidence 999999999999975 5889999999999999999999999999986 48999999999999999999999999999
Q ss_pred HHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 004362 555 EEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCP 634 (759)
Q Consensus 555 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 634 (759)
..+.+.|+.++..+++.++.+|+++|++++|.++|+.+ +++..+|+.++.+|.+.|+.++|+++|++|.+.|+.
T Consensus 513 ~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~------~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~ 586 (857)
T PLN03077 513 AHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH------EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVN 586 (857)
T ss_pred HHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc------CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999886 458899999999999999999999999999999999
Q ss_pred CCHhhHHHHHHHHHhcCChHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCc--hHHHH
Q 004362 635 PDNYTYRIMIDSFCKTGGINSGYCLLLENI-DKGFIPSLSTIGRVINCLCVDHRVHEAVGFVHLMVQKGIVPE--VVNTI 711 (759)
Q Consensus 635 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~ 711 (759)
||..||+.++.+|.+.|++++|..+|+.|. +.|+.|+..+|..++..+.+.|++++|.+++++|. +.|+ +|.++
T Consensus 587 Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aL 663 (857)
T PLN03077 587 PDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGAL 663 (857)
T ss_pred CCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHH
Confidence 999999999999999999999999999999 67999999999999999999999999999999984 6777 89999
Q ss_pred Hhc--cccccccchHHHHHHHhcCCCchHHHHHHHhhhhhhhhhhh
Q 004362 712 FEA--DKREVASPKIVVEDLLKKSHITYYAYELLFDGIRDKKLLKK 755 (759)
Q Consensus 712 ~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 755 (759)
+.+ .+|+.+.+....+++++..|.....+.+|.+......+|++
T Consensus 664 l~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~ 709 (857)
T PLN03077 664 LNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDE 709 (857)
T ss_pred HHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHH
Confidence 988 78999999999999999999877888888887766666654
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=8.3e-67 Score=567.42 Aligned_cols=546 Identities=18% Similarity=0.254 Sum_probs=492.1
Q ss_pred CCCHHHHHHHHHHHHccCChhhHHHHHhhchhCCC-CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHH
Q 004362 143 VPDVYTFVIRIKSFCRTRRPHVALRLLKNMPSQGF-EPNAVAYCTLIAGFYEENHNVEAYELFDEMLGMGISPDIATFNK 221 (759)
Q Consensus 143 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 221 (759)
.++...|..++..+++.|++++|.++|++|...++ +++...++.++..|.+.|..++|+.+|+.|.. ||..+|+.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~ 442 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNM 442 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHH
Confidence 45677888888889999999999999999998874 56777888899999999999999999998864 89999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhCCC
Q 004362 222 LIHTLCKKGNVRESEKLFNKVLKRGVSPNLFTFNMFIQGLCRKGAISEAISLLDSLGREDLTPDVVTYNTLMCGLCKNSK 301 (759)
Q Consensus 222 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 301 (759)
++.+|++.|+++.|.++|+.|.+.|+.||..+|+.++.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHCCCCCChhcHHHHHHHHHHcCChhHHHHHHHHHHh--CCCCCCcccHHHHHHHHHhcCCHHHHHHHH
Q 004362 302 VVEAEYYLHKMVNEGLEPDGFSYNAVIDGYCKAGMISSADKILNDAIF--KGFVPDEFTYCSLINGLCQDGDVDRAMAVY 379 (759)
Q Consensus 302 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 379 (759)
+++|.++|++|...|+.||..+|+.++.+|++.|++++|.++|++|.. .++.||..+|+.++.+|++.|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999976 578899999999999999999999999999
Q ss_pred HHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 004362 380 VKALEKGLKPSIVLYNTLIKGLSQQGLILQALQLMNEMSESGCCPDMWTYNIVINGLCKMGCVSDANNLVNDAISKGYIP 459 (759)
Q Consensus 380 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 459 (759)
+.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.|
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHH
Q 004362 460 DIFTFNTLIDGYCKQLKMEIAIEILNTMWSHGVTPDVITYNSLLNGLCKAAKSEDVMETFKTMIEKRCVPNIITYSILGE 539 (759)
Q Consensus 460 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 539 (759)
+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|...|+.||..+|..++.
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~ 762 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHH
Q 004362 540 SLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFY 619 (759)
Q Consensus 540 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 619 (759)
+|++.|++++|.+++++|.+.|+.||..+|+.++.+|. +.+++|....+.+..- .+ +......+..+
T Consensus 763 a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f--~~---------g~~~~~n~w~~ 829 (1060)
T PLN03218 763 ASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSF--DS---------GRPQIENKWTS 829 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhh--hc---------cccccccchHH
Confidence 99999999999999999999999999999999987654 2466666554444322 00 11112223456
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 004362 620 MAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSLSTIGRVINCLCVDHRVHEAVGFVHLMV 699 (759)
Q Consensus 620 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 699 (759)
+|..+|++|.+.|+.||..||..++.+++..+..+.+..+++.+...+..|+..+|..++.++.+ ..++|..++++|.
T Consensus 830 ~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~--~~~~A~~l~~em~ 907 (1060)
T PLN03218 830 WALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGE--YDPRAFSLLEEAA 907 (1060)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhcc--ChHHHHHHHHHHH
Confidence 79999999999999999999999998888899999999999888777788899999999998743 2468999999999
Q ss_pred HCCCCCch
Q 004362 700 QKGIVPEV 707 (759)
Q Consensus 700 ~~~~~p~~ 707 (759)
..|+.|+.
T Consensus 908 ~~Gi~p~~ 915 (1060)
T PLN03218 908 SLGVVPSV 915 (1060)
T ss_pred HcCCCCCc
Confidence 99999994
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=6.6e-66 Score=560.40 Aligned_cols=547 Identities=18% Similarity=0.267 Sum_probs=489.4
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHH
Q 004362 37 KHTLLTYKYMIDKLGFHGNFEEMENLLLEMRMDVDDSLLEGVHIGVMRNYGRRGKVQEAVDVFERMDFYNCEPTVLSYNT 116 (759)
Q Consensus 37 ~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 116 (759)
.++...|..+...|++.|++++|.++|+.+...+..+.+...+..++..|.+.|..++|..+|+.|. .||..+|+.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~----~pd~~Tyn~ 442 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR----NPTLSTFNM 442 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC----CCCHHHHHH
Confidence 4456677888888899999999999999999887432255566678889999999999999999998 489999999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHhhchhCCCCCCHHhHHHHHHHHHhcCC
Q 004362 117 IMNILVEYGYFSQVHKVYMRMRNKGIVPDVYTFVIRIKSFCRTRRPHVALRLLKNMPSQGFEPNAVAYCTLIAGFYEENH 196 (759)
Q Consensus 117 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 196 (759)
++.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|+.+.|.++|++|.+.|+.||..+|+.+|.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhh--CCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004362 197 NVEAYELFDEMLGMGISPDIATFNKLIHTLCKKGNVRESEKLFNKVLK--RGVSPNLFTFNMFIQGLCRKGAISEAISLL 274 (759)
Q Consensus 197 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 274 (759)
+++|+++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999976 578999999999999999999999999999
Q ss_pred HHHhhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC
Q 004362 275 DSLGREDLTPDVVTYNTLMCGLCKNSKVVEAEYYLHKMVNEGLEPDGFSYNAVIDGYCKAGMISSADKILNDAIFKGFVP 354 (759)
Q Consensus 275 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 354 (759)
+.|.+.++.|+..+|+.++.+|++.|++++|.++|++|...|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.|
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004362 355 DEFTYCSLINGLCQDGDVDRAMAVYVKALEKGLKPSIVLYNTLIKGLSQQGLILQALQLMNEMSESGCCPDMWTYNIVIN 434 (759)
Q Consensus 355 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 434 (759)
+..+|+.+|.+|++.|++++|.++|++|...|+.|+..+|+.||.+|++.|++++|.++|++|...|+.||..||+.++.
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~ 762 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004362 435 GLCKMGCVSDANNLVNDAISKGYIPDIFTFNTLIDGYCKQLKMEIAIEILNTMWSHGVTPDVITYNSLLNGLCKAAKSED 514 (759)
Q Consensus 435 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 514 (759)
+|++.|++++|.+++.+|.+.|+.||..+|+.++.+|.+ .+++|..+.+.+...+. .......+..+.
T Consensus 763 a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~--~y~ka~~l~~~v~~f~~----------g~~~~~n~w~~~ 830 (1060)
T PLN03218 763 ASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLR--RFEKACALGEPVVSFDS----------GRPQIENKWTSW 830 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--HHHHHhhhhhhhhhhhc----------cccccccchHHH
Confidence 999999999999999999999999999999999876542 45666555444432210 011111233467
Q ss_pred HHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHH
Q 004362 515 VMETFKTMIEKRCVPNIITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMED 594 (759)
Q Consensus 515 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 594 (759)
|+.+|++|.+.|+.||..||..++.++...+..+.+..+++.+...+..|+..+|+.+++++.+. .++|..+|+.|..
T Consensus 831 Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~ 908 (1060)
T PLN03218 831 ALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAAS 908 (1060)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHH
Confidence 99999999999999999999999988888889999999999988888889999999999988432 4689999999999
Q ss_pred ccCCCCc
Q 004362 595 QYKISHT 601 (759)
Q Consensus 595 ~~~~~~~ 601 (759)
.+..|+-
T Consensus 909 ~Gi~p~~ 915 (1060)
T PLN03218 909 LGVVPSV 915 (1060)
T ss_pred cCCCCCc
Confidence 8766654
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=5.6e-63 Score=538.11 Aligned_cols=518 Identities=19% Similarity=0.297 Sum_probs=459.5
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHH
Q 004362 178 EPNAVAYCTLIAGFYEENHNVEAYELFDEMLGMG-ISPDIATFNKLIHTLCKKGNVRESEKLFNKVLKRGVSPNLFTFNM 256 (759)
Q Consensus 178 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 256 (759)
..+..+|+.+|..+.+.|++++|+++|+.|...+ ..||..+|+.++.+|.+.++++.+.+++..|.+.|+.||..+|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3456789999999999999999999999998764 679999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHHcCC
Q 004362 257 FIQGLCRKGAISEAISLLDSLGREDLTPDVVTYNTLMCGLCKNSKVVEAEYYLHKMVNEGLEPDGFSYNAVIDGYCKAGM 336 (759)
Q Consensus 257 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 336 (759)
++.+|++.|+++.|.++|++|. .||..+|++++.+|++.|++++|.++|++|.+.|+.|+..+|..++.+|++.|.
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~ 239 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS 239 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCc
Confidence 9999999999999999999998 789999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 004362 337 ISSADKILNDAIFKGFVPDEFTYCSLINGLCQDGDVDRAMAVYVKALEKGLKPSIVLYNTLIKGLSQQGLILQALQLMNE 416 (759)
Q Consensus 337 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 416 (759)
.+.+.+++..+.+.|+.+|..+++.|+.+|++.|++++|.++|++|.. +|..+||.++.+|++.|++++|+++|++
T Consensus 240 ~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~ 315 (697)
T PLN03081 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYE 315 (697)
T ss_pred HHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999864 5999999999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 004362 417 MSESGCCPDMWTYNIVINGLCKMGCVSDANNLVNDAISKGYIPDIFTFNTLIDGYCKQLKMEIAIEILNTMWSHGVTPDV 496 (759)
Q Consensus 417 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 496 (759)
|.+.|+.||..||+.++.+|++.|.+++|.+++..+.+.|+.||..+++.|+.+|++.|++++|.++|++|.+ ||.
T Consensus 316 M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~ 391 (697)
T PLN03081 316 MRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNL 391 (697)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999864 688
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCccHHHHHHHHHH
Q 004362 497 ITYNSLLNGLCKAAKSEDVMETFKTMIEKRCVPNIITYSILGESLCKAHKITEAFNLLEEMEN-KGLTLDTVAFGTLING 575 (759)
Q Consensus 497 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~ 575 (759)
.+|+.++.+|++.|+.++|+++|++|.+.|+.||..||..++.+|.+.|.+++|.++|+.|.+ .|+.|+..+|+.++.+
T Consensus 392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~ 471 (697)
T PLN03081 392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIEL 471 (697)
T ss_pred eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHH
Confidence 889999999999999999999999888888888888888888888888888888888888875 4777777777777777
Q ss_pred HHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHH
Q 004362 576 FCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINS 655 (759)
Q Consensus 576 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 655 (759)
|++.|++++|.++++++ ++.|+..+|+.|+.+|...|+++.
T Consensus 472 l~r~G~~~eA~~~~~~~---------------------------------------~~~p~~~~~~~Ll~a~~~~g~~~~ 512 (697)
T PLN03081 472 LGREGLLDEAYAMIRRA---------------------------------------PFKPTVNMWAALLTACRIHKNLEL 512 (697)
T ss_pred HHhcCCHHHHHHHHHHC---------------------------------------CCCCCHHHHHHHHHHHHHcCCcHH
Confidence 77777777777765432 457888899999999999999999
Q ss_pred HHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCchHHHHHhcc-------cc--cc------
Q 004362 656 GYCLLLENIDKGFIPS-LSTIGRVINCLCVDHRVHEAVGFVHLMVQKGIVPEVVNTIFEAD-------KR--EV------ 719 (759)
Q Consensus 656 A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~-------~~--~~------ 719 (759)
|..+++++.+ +.|+ ..+|..++..|.+.|+|++|.+++++|.++|+.+...++|++.+ .| .+
T Consensus 513 a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i 590 (697)
T PLN03081 513 GRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREI 590 (697)
T ss_pred HHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHH
Confidence 9999999887 7786 45677777888899999999999999999999877666776541 11 12
Q ss_pred -ccchHHHHHHHhcCCCchHHHHHHHhhhh
Q 004362 720 -ASPKIVVEDLLKKSHITYYAYELLFDGIR 748 (759)
Q Consensus 720 -~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 748 (759)
+....+..+|.+.||.|++.+.+.....+
T Consensus 591 ~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~ 620 (697)
T PLN03081 591 YQKLDELMKEISEYGYVAEENELLPDVDED 620 (697)
T ss_pred HHHHHHHHHHHHHcCCCCCcchhhccccHH
Confidence 33345667788899999988766554433
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.4e-59 Score=511.61 Aligned_cols=577 Identities=19% Similarity=0.285 Sum_probs=495.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhhCC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004362 77 GVHIGVMRNYGRRGKVQEAVDVFERMDFYN-CEPTVLSYNTIMNILVEYGYFSQVHKVYMRMRNKGIVPDVYTFVIRIKS 155 (759)
Q Consensus 77 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 155 (759)
..++.++..+.+.|++++|+++|+.|...+ ..||..+|+.++.+|.+.++++.+.+++..|.+.|+.||..+|+.++..
T Consensus 88 ~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~ 167 (697)
T PLN03081 88 VSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLM 167 (697)
T ss_pred eeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 368889999999999999999999998654 5789999999999999999999999999999999999999999999999
Q ss_pred HHccCChhhHHHHHhhchhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHH
Q 004362 156 FCRTRRPHVALRLLKNMPSQGFEPNAVAYCTLIAGFYEENHNVEAYELFDEMLGMGISPDIATFNKLIHTLCKKGNVRES 235 (759)
Q Consensus 156 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 235 (759)
|++.|+++.|.++|++|.+ ||..+|++++.+|++.|++++|+++|++|.+.|+.|+..+|..++.+|++.|+.+.+
T Consensus 168 y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 168 HVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 9999999999999999975 689999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 004362 236 EKLFNKVLKRGVSPNLFTFNMFIQGLCRKGAISEAISLLDSLGREDLTPDVVTYNTLMCGLCKNSKVVEAEYYLHKMVNE 315 (759)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 315 (759)
.+++..+.+.|+.||..+++.|+.+|++.|++++|.++|++|. .+|..+|++++.+|++.|++++|.++|++|...
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~ 319 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDS 319 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999997 789999999999999999999999999999999
Q ss_pred CCCCChhcHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHH
Q 004362 316 GLEPDGFSYNAVIDGYCKAGMISSADKILNDAIFKGFVPDEFTYCSLINGLCQDGDVDRAMAVYVKALEKGLKPSIVLYN 395 (759)
Q Consensus 316 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 395 (759)
|+.||..||+.++.+|++.|+++.|.+++..+.+.|+.||..+++.|+.+|+++|++++|.++|++|.+ ||..+||
T Consensus 320 g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n 395 (697)
T PLN03081 320 GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWN 395 (697)
T ss_pred CCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999864 6999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-CCCCCCHhhHHHHHHHHHhc
Q 004362 396 TLIKGLSQQGLILQALQLMNEMSESGCCPDMWTYNIVINGLCKMGCVSDANNLVNDAIS-KGYIPDIFTFNTLIDGYCKQ 474 (759)
Q Consensus 396 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~ 474 (759)
.||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .++.|+..+|+.++++|++.
T Consensus 396 ~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~ 475 (697)
T PLN03081 396 ALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGRE 475 (697)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999986 58999999999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHH
Q 004362 475 LKMEIAIEILNTMWSHGVTPDVITYNSLLNGLCKAAKSEDVMETFKTMIEKRCVPNIITYSILGESLCKAHKITEAFNLL 554 (759)
Q Consensus 475 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 554 (759)
|++++|.+++++| ++.|+..+|+.++.+|...|+.+.|..+++++.+.+ +.+..+|..++..|++.|++++|.+++
T Consensus 476 G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~-p~~~~~y~~L~~~y~~~G~~~~A~~v~ 551 (697)
T PLN03081 476 GLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG-PEKLNNYVVLLNLYNSSGRQAEAAKVV 551 (697)
T ss_pred CCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC-CCCCcchHHHHHHHHhCCCHHHHHHHH
Confidence 9999999998876 467999999999999999999999999999997653 235679999999999999999999999
Q ss_pred HHHHHCCCCccHH-HHHHHH---HHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004362 555 EEMENKGLTLDTV-AFGTLI---NGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSE 630 (759)
Q Consensus 555 ~~~~~~~~~~~~~-~~~~l~---~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 630 (759)
+.|.+.|+...+. +|..+. ..+. .|+ ...|....+ +....++..+|.+
T Consensus 552 ~~m~~~g~~k~~g~s~i~~~~~~~~f~-~~d--------------~~h~~~~~i-------------~~~l~~l~~~~~~ 603 (697)
T PLN03081 552 ETLKRKGLSMHPACTWIEVKKQDHSFF-SGD--------------RLHPQSREI-------------YQKLDELMKEISE 603 (697)
T ss_pred HHHHHcCCccCCCeeEEEECCeEEEEc-cCC--------------CCCccHHHH-------------HHHHHHHHHHHHH
Confidence 9999998754332 121110 0000 011 001111111 2233456677777
Q ss_pred cCCCCCHhhHHHHHHHHHhcCChHHHHHHHHH--HHhCCCC--CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHCC
Q 004362 631 KGCPPDNYTYRIMIDSFCKTGGINSGYCLLLE--NIDKGFI--PSLSTIGRVINCLCVDHRVHEAVGFVHLMVQKG 702 (759)
Q Consensus 631 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~--~~~~g~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 702 (759)
.|..||......=+. ....++.+..-.+ ++..|+. |.. +...+..++.-+|+.+.|.+++.++....
T Consensus 604 ~gy~~~~~~~~~~~~----~~~~~~~~~~hsekla~a~~l~~~~~~-~~i~i~knlr~c~dch~~~k~~s~~~~r~ 674 (697)
T PLN03081 604 YGYVAEENELLPDVD----EDEEKVSGRYHSEKLAIAFGLINTSEW-TPLQITQSHRICKDCHKVIKFIALVTKRE 674 (697)
T ss_pred cCCCCCcchhhcccc----HHHHHHHHHhccHHHHHHhhCccCCCC-CeEEEecCCEECCCchhhHHHHhhhcceE
Confidence 788887432211000 0011122222111 2333432 221 12345677778999999999999987644
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3.7e-44 Score=413.68 Aligned_cols=721 Identities=12% Similarity=0.043 Sum_probs=590.3
Q ss_pred HHHHHHHhcCCChHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 004362 8 KHVAAVVKHQKNPLTALEMFNSVKREDGFKHTLLTYKYMIDKLGFHGNFEEMENLLLEMRMDVDDSLLEGVHIGVMRNYG 87 (759)
Q Consensus 8 ~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 87 (759)
..++.++...|++++|++.++.+.... +.+...+..++.++...|++++|...|+.+...+|. +..++..++..+.
T Consensus 163 ~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~--~~~~~~~~~~~~~ 238 (899)
T TIGR02917 163 LGLAQLALAENRFDEARALIDEVLTAD--PGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPN--NPAVLLALATILI 238 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHH
Confidence 345666778999999999999987754 346778888899999999999999999999998888 8889999999999
Q ss_pred hcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChhhHH
Q 004362 88 RRGKVQEAVDVFERMDFYNCEPTVLSYNTIMNILVEYGYFSQVHKVYMRMRNKGIVPD-VYTFVIRIKSFCRTRRPHVAL 166 (759)
Q Consensus 88 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~ 166 (759)
..|++++|...++.+.... +.+...+......+...|++++|...|+++.+.+ |+ ...+..+...+...|+++.|.
T Consensus 239 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~~~~~~~~~g~~~~A~ 315 (899)
T TIGR02917 239 EAGEFEEAEKHADALLKKA-PNSPLAHYLKALVDFQKKNYEDARETLQDALKSA--PEYLPALLLAGASEYQLGNLEQAY 315 (899)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999998655 3444555556667778999999999999998865 33 445556677788999999999
Q ss_pred HHHhhchhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCC
Q 004362 167 RLLKNMPSQGFEPNAVAYCTLIAGFYEENHNVEAYELFDEMLGMGISPDIATFNKLIHTLCKKGNVRESEKLFNKVLKRG 246 (759)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 246 (759)
..++.+.... +.+...+..+...+...|++++|...++.+.... +.+...+..+...+.+.|++++|.++|+++.+..
T Consensus 316 ~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 393 (899)
T TIGR02917 316 QYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELD 393 (899)
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 9999988775 5667788888889999999999999999998764 3467778888899999999999999999988764
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhcHHH
Q 004362 247 VSPNLFTFNMFIQGLCRKGAISEAISLLDSLGREDLTPDVVTYNTLMCGLCKNSKVVEAEYYLHKMVNEGLEPDGFSYNA 326 (759)
Q Consensus 247 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 326 (759)
+.+...+..+...+...|++++|.+.++.+.... +........++..+.+.|++++|..+++.+... .+.+..++..
T Consensus 394 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~ 470 (899)
T TIGR02917 394 -PENAAARTQLGISKLSQGDPSEAIADLETAAQLD-PELGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNL 470 (899)
T ss_pred -CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC-CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHH
Confidence 3356677888888999999999999999987664 334455667778889999999999999998876 3456778888
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC
Q 004362 327 VIDGYCKAGMISSADKILNDAIFKGFVPDEFTYCSLINGLCQDGDVDRAMAVYVKALEKGLKPSIVLYNTLIKGLSQQGL 406 (759)
Q Consensus 327 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 406 (759)
+...+...|++++|.+.|+++.... +.+...+..++..+...|++++|...|+++....+. +..++..+...+...|+
T Consensus 471 l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 548 (899)
T TIGR02917 471 LGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK-NLRAILALAGLYLRTGN 548 (899)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHcCC
Confidence 8999999999999999999988764 335567778888999999999999999999887655 77888889999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 004362 407 ILQALQLMNEMSESGCCPDMWTYNIVINGLCKMGCVSDANNLVNDAISKGYIPDIFTFNTLIDGYCKQLKMEIAIEILNT 486 (759)
Q Consensus 407 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 486 (759)
.++|...++++...+ +.+...+..++..+...|++++|..+++.+.... +.+...|..+..+|...|++++|...|++
T Consensus 549 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 626 (899)
T TIGR02917 549 EEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKK 626 (899)
T ss_pred HHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999988764 3456677888889999999999999999988754 55778899999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccH
Q 004362 487 MWSHGVTPDVITYNSLLNGLCKAAKSEDVMETFKTMIEKRCVPNIITYSILGESLCKAHKITEAFNLLEEMENKGLTLDT 566 (759)
Q Consensus 487 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 566 (759)
+.+.. +.+...+..+..++...|++++|...|+++.+.. +.+..++..++..+...|++++|..+++.+.+. .+.+.
T Consensus 627 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~ 703 (899)
T TIGR02917 627 LLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQ-HPKAA 703 (899)
T ss_pred HHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcCCh
Confidence 98764 3367778888899999999999999999998764 446778888999999999999999999999887 35677
Q ss_pred HHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 004362 567 VAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDS 646 (759)
Q Consensus 567 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 646 (759)
..+..++..+...|++++|...|+.+... .|.+ ..+..++.++...|++++|.+.++++.+.. +.+...+..++..
T Consensus 704 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~ 779 (899)
T TIGR02917 704 LGFELEGDLYLRQKDYPAAIQAYRKALKR--APSS-QNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAEL 779 (899)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 78888889999999999999999999887 4444 677788899999999999999999998763 5568888889999
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCc---hHHHHHhc--cccccc
Q 004362 647 FCKTGGINSGYCLLLENIDKGFIPS-LSTIGRVINCLCVDHRVHEAVGFVHLMVQKGIVPE---VVNTIFEA--DKREVA 720 (759)
Q Consensus 647 ~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~~~--~~~~~~ 720 (759)
|...|++++|...|+++++ ..|+ ...+..+...+...|+ .+|+.+++++... .|+ .+..+... ..|+++
T Consensus 780 ~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~ 854 (899)
T TIGR02917 780 YLAQKDYDKAIKHYRTVVK--KAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKL--APNIPAILDTLGWLLVEKGEAD 854 (899)
T ss_pred HHHCcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHH
Confidence 9999999999999999998 5565 4455666677778888 8899999998873 444 33333333 789999
Q ss_pred cchHHHHHHHhcCCCchHHHHHHHhh-hhhhhhhhhh
Q 004362 721 SPKIVVEDLLKKSHITYYAYELLFDG-IRDKKLLKKK 756 (759)
Q Consensus 721 ~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 756 (759)
+|...++++++.++....++..+... ...|+..++.
T Consensus 855 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 891 (899)
T TIGR02917 855 RALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEAR 891 (899)
T ss_pred HHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999988744554444444 4456665553
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.4e-43 Score=406.95 Aligned_cols=710 Identities=13% Similarity=0.061 Sum_probs=567.9
Q ss_pred HHHHHhcCCChHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhc
Q 004362 10 VAAVVKHQKNPLTALEMFNSVKREDGFKHTLLTYKYMIDKLGFHGNFEEMENLLLEMRMDVDDSLLEGVHIGVMRNYGRR 89 (759)
Q Consensus 10 ~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 89 (759)
++..+...|++++|.+.|+.+....+. +...+..++..+...|++++|.+.++.+...+|. +...+..++..+...
T Consensus 131 ~~~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 206 (899)
T TIGR02917 131 RGLAYLGLGQLELAQKSYEQALAIDPR--SLYAKLGLAQLALAENRFDEARALIDEVLTADPG--NVDALLLKGDLLLSL 206 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCC--ChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHhc
Confidence 455566788999999999988776543 4556778888888999999999999999888877 778888889999999
Q ss_pred CChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHH
Q 004362 90 GKVQEAVDVFERMDFYNCEPTVLSYNTIMNILVEYGYFSQVHKVYMRMRNKGIVPDVYTFVIRIKSFCRTRRPHVALRLL 169 (759)
Q Consensus 90 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 169 (759)
|++++|...|+++.... +.+...+..++.++...|++++|...++.+.+.. +.+...+......+...|++++|...|
T Consensus 207 g~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~ 284 (899)
T TIGR02917 207 GNIELALAAYRKAIALR-PNNPAVLLALATILIEAGEFEEAEKHADALLKKA-PNSPLAHYLKALVDFQKKNYEDARETL 284 (899)
T ss_pred CCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHhcCHHHHHHHH
Confidence 99999999999887655 5677788888888999999999999999988764 233444445555667889999999999
Q ss_pred hhchhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC
Q 004362 170 KNMPSQGFEPNAVAYCTLIAGFYEENHNVEAYELFDEMLGMGISPDIATFNKLIHTLCKKGNVRESEKLFNKVLKRGVSP 249 (759)
Q Consensus 170 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 249 (759)
+++.+.+ +.+...+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++.+.... +.
T Consensus 285 ~~~l~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~ 361 (899)
T TIGR02917 285 QDALKSA-PEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PD 361 (899)
T ss_pred HHHHHhC-CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CC
Confidence 9888765 3334555666677888999999999999988763 3355667777888889999999999999887764 34
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhcHHHHHH
Q 004362 250 NLFTFNMFIQGLCRKGAISEAISLLDSLGREDLTPDVVTYNTLMCGLCKNSKVVEAEYYLHKMVNEGLEPDGFSYNAVID 329 (759)
Q Consensus 250 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 329 (759)
+...+..+...+.+.|++++|.+.|+++.... +.+...+..+...+...|++++|...++.+...... .......++.
T Consensus 362 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~ 439 (899)
T TIGR02917 362 DPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLIL 439 (899)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHH
Confidence 67788888888999999999999999887654 445667777888888999999999999988876432 3345556777
Q ss_pred HHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHH
Q 004362 330 GYCKAGMISSADKILNDAIFKGFVPDEFTYCSLINGLCQDGDVDRAMAVYVKALEKGLKPSIVLYNTLIKGLSQQGLILQ 409 (759)
Q Consensus 330 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 409 (759)
.+.+.|+++.|..+++.+.... +.+..++..+...+...|++++|...|+++.+..+. +...+..+...+...|++++
T Consensus 440 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~ 517 (899)
T TIGR02917 440 SYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPD-FFPAAANLARIDIQEGNPDD 517 (899)
T ss_pred HHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHCCCHHH
Confidence 8888999999999999887653 446778888899999999999999999998877554 66677888888889999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004362 410 ALQLMNEMSESGCCPDMWTYNIVINGLCKMGCVSDANNLVNDAISKGYIPDIFTFNTLIDGYCKQLKMEIAIEILNTMWS 489 (759)
Q Consensus 410 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 489 (759)
|...++++...+ +.+..++..+...+...|+.++|..+++++.... +.+...+..++..|...|++++|..+++.+.+
T Consensus 518 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 595 (899)
T TIGR02917 518 AIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAAD 595 (899)
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999988764 3467788888888889999999999999887764 44667778888889999999999999999887
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHH
Q 004362 490 HGVTPDVITYNSLLNGLCKAAKSEDVMETFKTMIEKRCVPNIITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAF 569 (759)
Q Consensus 490 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 569 (759)
.. +.+...|..++.++...|++++|+..|+.+.+.. +.+...+..++.++...|++++|..+++++.+. .+.+...+
T Consensus 596 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~ 672 (899)
T TIGR02917 596 AA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALEL-KPDNTEAQ 672 (899)
T ss_pred cC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHH
Confidence 53 4567888889999999999999999999988764 346667888888899999999999999998876 45567888
Q ss_pred HHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh
Q 004362 570 GTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCK 649 (759)
Q Consensus 570 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 649 (759)
..++..+...|++++|.++++.+... .|++...+..++.++...|++++|++.|+++.+. .|+..++..++.++..
T Consensus 673 ~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~ 748 (899)
T TIGR02917 673 IGLAQLLLAAKRTESAKKIAKSLQKQ--HPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLA 748 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHH
Confidence 88899999999999999999999887 6778888888999999999999999999998865 4666778888889999
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCc---hHHHHHhc--cccccccch
Q 004362 650 TGGINSGYCLLLENIDKGFIPSLS-TIGRVINCLCVDHRVHEAVGFVHLMVQKGIVPE---VVNTIFEA--DKREVASPK 723 (759)
Q Consensus 650 ~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~~~--~~~~~~~a~ 723 (759)
.|++++|...++++++ ..|++. .+..+...+...|++++|.++++++.+. .|+ .+..+... ..|+ ++|.
T Consensus 749 ~g~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~ 823 (899)
T TIGR02917 749 SGNTAEAVKTLEAWLK--THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK--APDNAVVLNNLAWLYLELKD-PRAL 823 (899)
T ss_pred CCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHH
Confidence 9999999999999988 556544 4445555567889999999999999874 344 33333333 5666 7799
Q ss_pred HHHHHHHhcCCCchHHHHHHHhh
Q 004362 724 IVVEDLLKKSHITYYAYELLFDG 746 (759)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~ 746 (759)
..++++++..+.....+..+...
T Consensus 824 ~~~~~~~~~~~~~~~~~~~~~~~ 846 (899)
T TIGR02917 824 EYAEKALKLAPNIPAILDTLGWL 846 (899)
T ss_pred HHHHHHHhhCCCCcHHHHHHHHH
Confidence 99999998877766555544444
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=3.5e-32 Score=311.27 Aligned_cols=641 Identities=14% Similarity=0.057 Sum_probs=447.5
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHH--------
Q 004362 43 YKYMIDKLGFHGNFEEMENLLLEMRMDVDDSLLEGVHIGVMRNYGRRGKVQEAVDVFERMDFYNCEPTVLSY-------- 114 (759)
Q Consensus 43 ~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-------- 114 (759)
+...++.....++.+.|.+.++++....|. ++.++..+++.+.+.|+.++|.+.++++.... +.+....
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~--~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~~~~~~~~~~ 107 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELIDPN--NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAYRSSRTTMLL 107 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHh
Confidence 445555666677777777777777777776 66777777777777777777777777776554 2232221
Q ss_pred --------HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCChhhHHHHHhhchhCCCCCCHHhHH
Q 004362 115 --------NTIMNILVEYGYFSQVHKVYMRMRNKGIVPDVY-TFVIRIKSFCRTRRPHVALRLLKNMPSQGFEPNAVAYC 185 (759)
Q Consensus 115 --------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 185 (759)
..+.+.+...|++++|.+.|+.+.+.+ +|+.. ............|+.++|++.++++.... |.+...+.
T Consensus 108 ~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~ 185 (1157)
T PRK11447 108 STPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRN 185 (1157)
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 223345666777777777777776643 23321 11111112223477777777777777664 45566677
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCC----------------Ch---hhHHHHHHHHHhcCChhHHHHHHHHHhhCC
Q 004362 186 TLIAGFYEENHNVEAYELFDEMLGMGISP----------------DI---ATFNKLIHTLCKKGNVRESEKLFNKVLKRG 246 (759)
Q Consensus 186 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----------------~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 246 (759)
.+...+...|++++|++.|+++....... +. ..+...+..+........|...+.......
T Consensus 186 ~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~ 265 (1157)
T PRK11447 186 TLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQL 265 (1157)
T ss_pred HHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhc
Confidence 77777777777777777777765432100 00 011111111111222344555555544332
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh-hcH-
Q 004362 247 VSPNLFTFNMFIQGLCRKGAISEAISLLDSLGREDLTPDVVTYNTLMCGLCKNSKVVEAEYYLHKMVNEGLEPDG-FSY- 324 (759)
Q Consensus 247 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~- 324 (759)
..|.... ......+...|++++|+..|++..+.. +.+...+..+..++.+.|++++|+..|++..+....... ..+
T Consensus 266 ~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~ 343 (1157)
T PRK11447 266 ADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWE 343 (1157)
T ss_pred cCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHH
Confidence 2333221 233556778899999999999988764 446778888889999999999999999998876332111 111
Q ss_pred -----------HHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHh
Q 004362 325 -----------NAVIDGYCKAGMISSADKILNDAIFKGFVPDEFTYCSLINGLCQDGDVDRAMAVYVKALEKGLKPSIVL 393 (759)
Q Consensus 325 -----------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 393 (759)
......+.+.|++++|+..+++++... +.+...+..+...+...|++++|++.|+++.+..+. +...
T Consensus 344 ~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a 421 (1157)
T PRK11447 344 SLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNA 421 (1157)
T ss_pred HHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHH
Confidence 122446678899999999999999874 335667778899999999999999999999987554 5666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHH
Q 004362 394 YNTLIKGLSQQGLILQALQLMNEMSESGCC--------PDMWTYNIVINGLCKMGCVSDANNLVNDAISKGYIPDIFTFN 465 (759)
Q Consensus 394 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 465 (759)
+..+...|. .++.++|...++.+...... .....+..+...+...|++++|...+++.++.. +.+...+.
T Consensus 422 ~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~ 499 (1157)
T PRK11447 422 VRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTY 499 (1157)
T ss_pred HHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 777777664 45789998888765432100 011234556677888999999999999998874 34677788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh---------hcHHH
Q 004362 466 TLIDGYCKQLKMEIAIEILNTMWSHGVTPDVITYNSLLNGLCKAAKSEDVMETFKTMIEKRCVPNI---------ITYSI 536 (759)
Q Consensus 466 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------~~~~~ 536 (759)
.+...|.+.|++++|...++++.+.. +.+...+..+...+...++.++|+..++.+......++. ..+..
T Consensus 500 ~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~ 578 (1157)
T PRK11447 500 RLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLE 578 (1157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHH
Confidence 88999999999999999999998753 235555666666677889999999999876543222221 12335
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcC
Q 004362 537 LGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKL 616 (759)
Q Consensus 537 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 616 (759)
.+..+...|++++|..+++. .+.+...+..+...+.+.|++++|+..|+++... .|.++..+..++.+|...|
T Consensus 579 ~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g 651 (1157)
T PRK11447 579 TANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQG 651 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCC
Confidence 56778899999999999872 4567777888999999999999999999999998 8999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCcH
Q 004362 617 NFYMAEKLFYEMSEKGCPPD-NYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSL-------STIGRVINCLCVDHRV 688 (759)
Q Consensus 617 ~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-------~~~~~l~~~~~~~g~~ 688 (759)
++++|++.++++.+. .|+ ..++..++.++...|++++|..++++++. ..|+. ..+..+...+...|++
T Consensus 652 ~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~--~~~~~~~~~~~a~~~~~~a~~~~~~G~~ 727 (1157)
T PRK11447 652 DLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIP--QAKSQPPSMESALVLRDAARFEAQTGQP 727 (1157)
T ss_pred CHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhh--hCccCCcchhhHHHHHHHHHHHHHcCCH
Confidence 999999999998854 454 67788888999999999999999999987 33321 2333445566789999
Q ss_pred HHHHHHHHHHHH-CCCCCc
Q 004362 689 HEAVGFVHLMVQ-KGIVPE 706 (759)
Q Consensus 689 ~~A~~~~~~~~~-~~~~p~ 706 (759)
++|+..++++.. .|+.|.
T Consensus 728 ~~A~~~y~~Al~~~~~~~~ 746 (1157)
T PRK11447 728 QQALETYKDAMVASGITPT 746 (1157)
T ss_pred HHHHHHHHHHHhhcCCCCC
Confidence 999999999863 445443
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=5.2e-31 Score=301.65 Aligned_cols=635 Identities=12% Similarity=0.044 Sum_probs=477.5
Q ss_pred HhcCCChHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCccHHHH--------------
Q 004362 14 VKHQKNPLTALEMFNSVKREDGFKHTLLTYKYMIDKLGFHGNFEEMENLLLEMRMDVDDSLLEGVH-------------- 79 (759)
Q Consensus 14 l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-------------- 79 (759)
-...++++.|.+.++++....+. ++..+...+.++...|+.++|.+.++++.+..|. +....
T Consensus 38 ~~~~~~~d~a~~~l~kl~~~~p~--~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~--~~~~~~~~~~~~~~~~~~~ 113 (1157)
T PRK11447 38 GEATHREDLVRQSLYRLELIDPN--NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPD--SNAYRSSRTTMLLSTPEGR 113 (1157)
T ss_pred HHhhCChHHHHHHHHHHHccCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC--ChHHHHHHHHHHhcCCchh
Confidence 34789999999999998877654 5677788999999999999999999999999988 54432
Q ss_pred --HHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHH-HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004362 80 --IGVMRNYGRRGKVQEAVDVFERMDFYNCEPTVLS-YNTIMNILVEYGYFSQVHKVYMRMRNKGIVPDVYTFVIRIKSF 156 (759)
Q Consensus 80 --~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 156 (759)
..+++.+.+.|++++|+..|+.+...+ +++... ...........|+.++|+..++++.+.. +.+...+..+...+
T Consensus 114 ~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll 191 (1157)
T PRK11447 114 QALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLL 191 (1157)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 445678899999999999999998654 444321 1112222334699999999999999874 44677888899999
Q ss_pred HccCChhhHHHHHhhchhCCCCCCH---HhH-----------------HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh
Q 004362 157 CRTRRPHVALRLLKNMPSQGFEPNA---VAY-----------------CTLIAGFYEENHNVEAYELFDEMLGMGISPDI 216 (759)
Q Consensus 157 ~~~~~~~~A~~~~~~~~~~~~~~~~---~~~-----------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 216 (759)
...|++++|+..++++.... +.+. ..| ...+..+-.......+...+.........|+.
T Consensus 192 ~~~g~~~eAl~~l~~~~~~~-~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~ 270 (1157)
T PRK11447 192 FSSGRRDEGFAVLEQMAKSP-AGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAF 270 (1157)
T ss_pred HccCCHHHHHHHHHHHhhCC-CchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcch
Confidence 99999999999999986542 1111 111 11111111122234455555554443223332
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CcchHH-----
Q 004362 217 ATFNKLIHTLCKKGNVRESEKLFNKVLKRGVSPNLFTFNMFIQGLCRKGAISEAISLLDSLGREDLTP-DVVTYN----- 290 (759)
Q Consensus 217 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~----- 290 (759)
.. ......+...|++++|...|++.++... .+...+..+...+.+.|++++|+..|++..+..... ....|.
T Consensus 271 ~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~ 348 (1157)
T PRK11447 271 RA-RAQGLAAVDSGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKV 348 (1157)
T ss_pred HH-HHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHh
Confidence 21 2335667789999999999999998743 377888999999999999999999999988663211 111121
Q ss_pred -------HHHHHHHhCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHH
Q 004362 291 -------TLMCGLCKNSKVVEAEYYLHKMVNEGLEPDGFSYNAVIDGYCKAGMISSADKILNDAIFKGFVPDEFTYCSLI 363 (759)
Q Consensus 291 -------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 363 (759)
.....+.+.|++++|+..|+++.... +.+...+..+...+...|++++|++.|+++++.. +.+...+..+.
T Consensus 349 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~ 426 (1157)
T PRK11447 349 NRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLA 426 (1157)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 22346678999999999999999874 3356677788899999999999999999999864 22455666677
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCC--------CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004362 364 NGLCQDGDVDRAMAVYVKALEKGLK--------PSIVLYNTLIKGLSQQGLILQALQLMNEMSESGCCPDMWTYNIVING 435 (759)
Q Consensus 364 ~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 435 (759)
..+. .++.++|..+++.+...... .....+..+...+...|++++|++.|++..+... -+...+..+...
T Consensus 427 ~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA~~ 504 (1157)
T PRK11447 427 NLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP-GSVWLTYRLAQD 504 (1157)
T ss_pred HHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 7664 46789999888765432110 0123455667788899999999999999998742 256677888899
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---------HHHHHHHHH
Q 004362 436 LCKMGCVSDANNLVNDAISKGYIPDIFTFNTLIDGYCKQLKMEIAIEILNTMWSHGVTPDVI---------TYNSLLNGL 506 (759)
Q Consensus 436 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---------~~~~l~~~~ 506 (759)
|...|++++|...++++.+.. +.+...+..+...+...++.++|...++.+......++.. .+..+...+
T Consensus 505 ~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l 583 (1157)
T PRK11447 505 LRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRL 583 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHH
Confidence 999999999999999998764 3355555556666778999999999998875432222221 123456678
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHH
Q 004362 507 CKAAKSEDVMETFKTMIEKRCVPNIITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAY 586 (759)
Q Consensus 507 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 586 (759)
...|+.++|..+++. .+++...+..++..+...|++++|+..|+++++. .|.+...+..++.+|...|++++|+
T Consensus 584 ~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~-~P~~~~a~~~la~~~~~~g~~~eA~ 657 (1157)
T PRK11447 584 RDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR-EPGNADARLGLIEVDIAQGDLAAAR 657 (1157)
T ss_pred HHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 889999999999872 2456677888999999999999999999999987 4667889999999999999999999
Q ss_pred HHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CC---CHhhHHHHHHHHHhcCChHHHHHHHH
Q 004362 587 QLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGC--PP---DNYTYRIMIDSFCKTGGINSGYCLLL 661 (759)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p---~~~~~~~l~~~~~~~g~~~~A~~~~~ 661 (759)
+.++.+... .|++...+..++.++...|++++|+++++++++..- +| +...+..++..+...|++++|+..|+
T Consensus 658 ~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~ 735 (1157)
T PRK11447 658 AQLAKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYK 735 (1157)
T ss_pred HHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999877 778888899999999999999999999999986521 11 12466677889999999999999999
Q ss_pred HHHh-CCCCC
Q 004362 662 ENID-KGFIP 670 (759)
Q Consensus 662 ~~~~-~g~~p 670 (759)
+++. .|+.|
T Consensus 736 ~Al~~~~~~~ 745 (1157)
T PRK11447 736 DAMVASGITP 745 (1157)
T ss_pred HHHhhcCCCC
Confidence 9974 35554
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=100.00 E-value=2.6e-27 Score=257.56 Aligned_cols=638 Identities=12% Similarity=0.024 Sum_probs=391.0
Q ss_pred HHHhCCChHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCChh
Q 004362 49 KLGFHGNFEEMENLLLEMRMDVDDSLLEGVHIGVMRNYGRRGKVQEAVDVFERMDFYNCEPTVLSYNTIMNILVEYGYFS 128 (759)
Q Consensus 49 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 128 (759)
.+...|++++|...|+.+...+|. +..++..+++.|...|++++|+..+++..... +.|...+..+ ..+ ++++
T Consensus 53 ~~~~~Gd~~~A~~~l~~Al~~dP~--n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld-P~n~~~~~~L-a~i---~~~~ 125 (987)
T PRK09782 53 KAQKNNDEATAIREFEYIHQQVPD--NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH-PGDARLERSL-AAI---PVEV 125 (987)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-cccHHHHHHH-HHh---ccCh
Confidence 334559999999999999999999 78999999999999999999999999998764 3444444443 222 8899
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHH--------HHccCChhhHHHHHhhchhCCCCCCHHhHHHH-HHHHHhcCChhH
Q 004362 129 QVHKVYMRMRNKGIVPDVYTFVIRIKS--------FCRTRRPHVALRLLKNMPSQGFEPNAVAYCTL-IAGFYEENHNVE 199 (759)
Q Consensus 129 ~a~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~ 199 (759)
+|..+|+++.+.. +-+..++..+... |.+. ++|.+.++ .......|+..+.... ...|.+.+++++
T Consensus 126 kA~~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~ 200 (987)
T PRK09782 126 KSVTTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQ 200 (987)
T ss_pred hHHHHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHH
Confidence 9999999999864 2345566555554 5554 55555555 2222223344444444 889999999999
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHh-cCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 004362 200 AYELFDEMLGMGISPDIATFNKLIHTLCK-KGNVRESEKLFNKVLKRGVSPNLFTFNMFIQGLCRKGAISEAISLLDSLG 278 (759)
Q Consensus 200 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 278 (759)
|++++.++.+.++. +......+..+|.. .++ +.+..+++. .+..+...+..++..|.+.|+.++|.+.++++.
T Consensus 201 Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~ 274 (987)
T PRK09782 201 ADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENK 274 (987)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 99999999998643 44446666677777 366 777777553 233578889999999999999999999999976
Q ss_pred hCCCC-CCcchHHHHHHHHHhCCChH-HHHHHHHHHHHCCCCCCh-hcHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC
Q 004362 279 REDLT-PDVVTYNTLMCGLCKNSKVV-EAEYYLHKMVNEGLEPDG-FSYNAVIDGYCKAGMISSADKILNDAIFKGFVPD 355 (759)
Q Consensus 279 ~~~~~-~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 355 (759)
..... |...+|.-+ +.+.+... .|..-|.+= ..++. ......+..+.+.++++.++++.. ..|.
T Consensus 275 ~~~~~~~~~~~~~~~---l~r~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~ 341 (987)
T PRK09782 275 PLFTTDAQEKSWLYL---LSKYSANPVQALANYTVQ----FADNRQYVVGATLPVLLKEGQYDAAQKLLA------TLPA 341 (987)
T ss_pred ccccCCCccHHHHHH---HHhccCchhhhccchhhh----hHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CCCc
Confidence 44212 344333333 33333321 111111110 01111 112223566666777775554422 1222
Q ss_pred cccHHHHHHH--HHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-C-CCCCHHHHHH
Q 004362 356 EFTYCSLING--LCQDGDVDRAMAVYVKALEKGLKPSIVLYNTLIKGLSQQGLILQALQLMNEMSES-G-CCPDMWTYNI 431 (759)
Q Consensus 356 ~~~~~~l~~~--~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~ 431 (759)
... ..+.. ....+...++...+..+....+. +......+.-...+.|+.++|..+|++.... + ..++......
T Consensus 342 ~~~--~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~-~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~ 418 (987)
T PRK09782 342 NEM--LEERYAVSVATRNKAEALRLARLLYQQEPA-NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMAR 418 (987)
T ss_pred chH--HHHHHhhccccCchhHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHH
Confidence 222 12221 12235555666666665554322 4444444444556667777777777766552 1 1222333335
Q ss_pred HHHHHHhcCC---hHHHHHH----------------------HHHHHHC-C-CCC--CHhhHHHHHHHHHhcCCHHHHHH
Q 004362 432 VINGLCKMGC---VSDANNL----------------------VNDAISK-G-YIP--DIFTFNTLIDGYCKQLKMEIAIE 482 (759)
Q Consensus 432 l~~~~~~~~~---~~~a~~~----------------------~~~~~~~-~-~~~--~~~~~~~l~~~~~~~~~~~~A~~ 482 (759)
++..|.+.+. ..++..+ +...... + .++ +...+..+..++.. ++.++|..
T Consensus 419 l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~ 497 (987)
T PRK09782 419 LASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALY 497 (987)
T ss_pred HHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHH
Confidence 5555555544 2222221 1111111 1 123 45566666666655 67777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004362 483 ILNTMWSHGVTPDVITYNSLLNGLCKAAKSEDVMETFKTMIEKRCVPNIITYSILGESLCKAHKITEAFNLLEEMENKGL 562 (759)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 562 (759)
.+.+.... .|+......+..++...|++++|...|+++... +|+...+..++.++...|++++|...+++.++..
T Consensus 498 a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~- 572 (987)
T PRK09782 498 AWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG- 572 (987)
T ss_pred HHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-
Confidence 77666654 345433333344445777777777777776543 3444455566667777777777777777777653
Q ss_pred CccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HhhHH
Q 004362 563 TLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPD-NYTYR 641 (759)
Q Consensus 563 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~ 641 (759)
+.....+..+.....+.|++++|...|+++.+. .|. ...+..++.++.+.|++++|+..++++++. .|+ ...+.
T Consensus 573 P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~ 647 (987)
T PRK09782 573 LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APS-ANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQA 647 (987)
T ss_pred CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHH
Confidence 333333334444444557788888887777776 553 677777777777778888888887777754 444 66777
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCch---HHHH--Hhcc
Q 004362 642 IMIDSFCKTGGINSGYCLLLENIDKGFIPSLS-TIGRVINCLCVDHRVHEAVGFVHLMVQKGIVPEV---VNTI--FEAD 715 (759)
Q Consensus 642 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~--~~~~ 715 (759)
.++.++...|++++|+..++++++ +.|++. .+..+...+...|++++|+..++++.+ +.|+. ...+ +...
T Consensus 648 nLG~aL~~~G~~eeAi~~l~~AL~--l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~--l~P~~a~i~~~~g~~~~~ 723 (987)
T PRK09782 648 ALGYALWDSGDIAQSREMLERAHK--GLPDDPALIRQLAYVNQRLDDMAATQHYARLVID--DIDNQALITPLTPEQNQQ 723 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCchhhhhhhHHHHH
Confidence 777777777788888887777777 667544 334555556777788888887777776 55652 2111 1224
Q ss_pred ccccccchHHHHHHHhcCCC
Q 004362 716 KREVASPKIVVEDLLKKSHI 735 (759)
Q Consensus 716 ~~~~~~a~~~~~~~~~~~~~ 735 (759)
..+++.+.+.+++....++.
T Consensus 724 ~~~~~~a~~~~~r~~~~~~~ 743 (987)
T PRK09782 724 RFNFRRLHEEVGRRWTFSFD 743 (987)
T ss_pred HHHHHHHHHHHHHHhhcCcc
Confidence 45566666666666664443
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=100.00 E-value=2e-27 Score=258.32 Aligned_cols=642 Identities=11% Similarity=-0.013 Sum_probs=446.0
Q ss_pred hcCCChHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhH
Q 004362 15 KHQKNPLTALEMFNSVKREDGFKHTLLTYKYMIDKLGFHGNFEEMENLLLEMRMDVDDSLLEGVHIGVMRNYGRRGKVQE 94 (759)
Q Consensus 15 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 94 (759)
...|++++|+..|+.+.+..|.. ..++..++.+|...|++++|+..++++.+.+|. +...+..++.. +++++
T Consensus 55 ~~~Gd~~~A~~~l~~Al~~dP~n--~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~--n~~~~~~La~i----~~~~k 126 (987)
T PRK09782 55 QKNNDEATAIREFEYIHQQVPDN--IPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPG--DARLERSLAAI----PVEVK 126 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc--cHHHHHHHHHh----ccChh
Confidence 35699999999999999887653 777799999999999999999999999999986 66665555333 99999
Q ss_pred HHHHHHHhhhCCCCCCHHHHHHHHHH--------HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHccCChhhH
Q 004362 95 AVDVFERMDFYNCEPTVLSYNTIMNI--------LVEYGYFSQVHKVYMRMRNKGIVPDVYTFVIR-IKSFCRTRRPHVA 165 (759)
Q Consensus 95 A~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~A 165 (759)
|..+++++.... +.+...+..+... |.+. ++|.+..+ .......|+..+.... .+.|...|+++.|
T Consensus 127 A~~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~A 201 (987)
T PRK09782 127 SVTTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQA 201 (987)
T ss_pred HHHHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHH
Confidence 999999998765 4455555555555 5555 55555555 3333333445544444 8999999999999
Q ss_pred HHHHhhchhCCCCCCHHhHHHHHHHHHh-cCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhh
Q 004362 166 LRLLKNMPSQGFEPNAVAYCTLIAGFYE-ENHNVEAYELFDEMLGMGISPDIATFNKLIHTLCKKGNVRESEKLFNKVLK 244 (759)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 244 (759)
++++.++.+.+ +.+......+...|.. .++ +++..+++.. +.-+...+..+...+.+.|+.++|.++++++..
T Consensus 202 i~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~ 275 (987)
T PRK09782 202 DTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRITYATALAYRGEKARLQHYLIENKP 275 (987)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcc
Confidence 99999999987 5666667778788877 366 7777776542 235778888999999999999999999998765
Q ss_pred CCCC-CCHHHHHHHHHHHHhcCCHH-HHHHHHHHHhhCCCCCC-cchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh
Q 004362 245 RGVS-PNLFTFNMFIQGLCRKGAIS-EAISLLDSLGREDLTPD-VVTYNTLMCGLCKNSKVVEAEYYLHKMVNEGLEPDG 321 (759)
Q Consensus 245 ~~~~-~~~~~~~~l~~~~~~~g~~~-~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 321 (759)
.-.. |...+|.-++ .+.+... .|..-|.+ ...++ ....-.++..+.+.++++.++++.. ..|..
T Consensus 276 ~~~~~~~~~~~~~~l---~r~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 342 (987)
T PRK09782 276 LFTTDAQEKSWLYLL---SKYSANPVQALANYTV----QFADNRQYVVGATLPVLLKEGQYDAAQKLLA------TLPAN 342 (987)
T ss_pred cccCCCccHHHHHHH---HhccCchhhhccchhh----hhHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CCCcc
Confidence 4222 4444443332 2333221 11111111 00111 1112223555666666665544311 22222
Q ss_pred hcHHHHHHHHH--HcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHhHHHH
Q 004362 322 FSYNAVIDGYC--KAGMISSADKILNDAIFKGFVPDEFTYCSLINGLCQDGDVDRAMAVYVKALEK--GLKPSIVLYNTL 397 (759)
Q Consensus 322 ~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~l 397 (759)
.. ..++... ..+...++...+..+.+.. +.+......+.-...+.|+.++|..+|+..... +-.++....+-+
T Consensus 343 ~~--~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l 419 (987)
T PRK09782 343 EM--LEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARL 419 (987)
T ss_pred hH--HHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHH
Confidence 21 1222222 2244555555555554431 224444444555556667777777777666552 111233344455
Q ss_pred HHHHHhcCC---HHHHHHH-------------------------HHHHHhCCCCC--CHHHHHHHHHHHHhcCChHHHHH
Q 004362 398 IKGLSQQGL---ILQALQL-------------------------MNEMSESGCCP--DMWTYNIVINGLCKMGCVSDANN 447 (759)
Q Consensus 398 ~~~~~~~~~---~~~a~~~-------------------------~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~ 447 (759)
+..|.+.+. ..++..+ +...... .++ +...+..+..++.. ++..+|..
T Consensus 420 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-~p~~~~~~a~~~LG~~l~~-~~~~eAi~ 497 (987)
T PRK09782 420 ASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGD-MSPSYDAAAWNRLAKCYRD-TLPGVALY 497 (987)
T ss_pred HHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhccc-CCCCCCHHHHHHHHHHHHh-CCcHHHHH
Confidence 555555543 2222222 2222221 123 56677777766666 88999999
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 004362 448 LVNDAISKGYIPDIFTFNTLIDGYCKQLKMEIAIEILNTMWSHGVTPDVITYNSLLNGLCKAAKSEDVMETFKTMIEKRC 527 (759)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 527 (759)
.+...... .|+......+...+...|++++|...|+++... +|+...+..+..++.+.|+.++|...++..++..
T Consensus 498 a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~- 572 (987)
T PRK09782 498 AWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG- 572 (987)
T ss_pred HHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-
Confidence 88887766 355444444455557899999999999998765 4555567777888899999999999999998864
Q ss_pred CCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHH
Q 004362 528 VPNIITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNI 607 (759)
Q Consensus 528 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 607 (759)
+++...+..+...+...|++++|...+++.++. .|+...+..+..++.+.|++++|+..|+++... .|++...++.
T Consensus 573 P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~n 648 (987)
T PRK09782 573 LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAA 648 (987)
T ss_pred CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 223333444444555669999999999999985 457888999999999999999999999999999 8999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhc
Q 004362 608 MINAFSEKLNFYMAEKLFYEMSEKGCPPD-NYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSLSTIG-RVINCLCVD 685 (759)
Q Consensus 608 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~-~l~~~~~~~ 685 (759)
++.++...|++++|+..++++++. .|+ +..+..++.++...|++++|+..++++++ +.|+..... .......+.
T Consensus 649 LG~aL~~~G~~eeAi~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~--l~P~~a~i~~~~g~~~~~~ 724 (987)
T PRK09782 649 LGYALWDSGDIAQSREMLERAHKG--LPDDPALIRQLAYVNQRLDDMAATQHYARLVID--DIDNQALITPLTPEQNQQR 724 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCchhhhhhhHHHHHH
Confidence 999999999999999999999975 454 88999999999999999999999999999 889876554 444445788
Q ss_pred CcHHHHHHHHHHHHHCCCCCchH
Q 004362 686 HRVHEAVGFVHLMVQKGIVPEVV 708 (759)
Q Consensus 686 g~~~~A~~~~~~~~~~~~~p~~~ 708 (759)
.+++.|.+-+++... +.|+.+
T Consensus 725 ~~~~~a~~~~~r~~~--~~~~~~ 745 (987)
T PRK09782 725 FNFRRLHEEVGRRWT--FSFDSS 745 (987)
T ss_pred HHHHHHHHHHHHHhh--cCccch
Confidence 889999998888876 666644
No 13
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.97 E-value=4.4e-25 Score=223.18 Aligned_cols=596 Identities=14% Similarity=0.108 Sum_probs=358.7
Q ss_pred hHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHH
Q 004362 20 PLTALEMFNSVKREDGFKHTLLTYKYMIDKLGFHGNFEEMENLLLEMRMDVDDSLLEGVHIGVMRNYGRRGKVQEAVDVF 99 (759)
Q Consensus 20 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 99 (759)
...|.-.|+.+-+..-..++...+......+..--+.+.|...|..+....|+ +...+..-++.....++|..|+.+|
T Consensus 110 ~~~at~~~~~A~ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~sp~--Nil~LlGkA~i~ynkkdY~~al~yy 187 (1018)
T KOG2002|consen 110 FDKATLLFDLADKIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQSPD--NILALLGKARIAYNKKDYRGALKYY 187 (1018)
T ss_pred HHHHHHHhhHHHHhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhCCc--chHHHHHHHHHHhccccHHHHHHHH
Confidence 34555566655443333333333333332222222358888888888888877 6666666677777888999999999
Q ss_pred HHhhhCC--CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc---CChhhHHHHHhhchh
Q 004362 100 ERMDFYN--CEPTVLSYNTIMNILVEYGYFSQVHKVYMRMRNKGIVPDVYTFVIRIKSFCRT---RRPHVALRLLKNMPS 174 (759)
Q Consensus 100 ~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~ 174 (759)
..+.... .++|+ .-.+..++.+.|+.+.|+..|.+..+.. +.++.++..|.-.-... ..+..+..++.....
T Consensus 188 k~al~inp~~~aD~--rIgig~Cf~kl~~~~~a~~a~~ralqLd-p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~ 264 (1018)
T KOG2002|consen 188 KKALRINPACKADV--RIGIGHCFWKLGMSEKALLAFERALQLD-PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYK 264 (1018)
T ss_pred HHHHhcCcccCCCc--cchhhhHHHhccchhhHHHHHHHHHhcC-hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHh
Confidence 8865332 34444 2334566778888899999999988854 12344444443322222 345557777776666
Q ss_pred CCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--CChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHH
Q 004362 175 QGFEPNAVAYCTLIAGFYEENHNVEAYELFDEMLGMGIS--PDIATFNKLIHTLCKKGNVRESEKLFNKVLKRGVSPNLF 252 (759)
Q Consensus 175 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 252 (759)
.+ +.++.+.+.|...|.-.|++..++.+...+...... .-+..|-.+.++|...|++++|...|.+..+....--..
T Consensus 265 ~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l 343 (1018)
T KOG2002|consen 265 EN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVL 343 (1018)
T ss_pred hc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccc
Confidence 55 567888888888888899999999988888765321 113357778888888999999999888877653222234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhCC----ChHHHHHHHHHHHHCCCCCChhcHHHHH
Q 004362 253 TFNMFIQGLCRKGAISEAISLLDSLGREDLTPDVVTYNTLMCGLCKNS----KVVEAEYYLHKMVNEGLEPDGFSYNAVI 328 (759)
Q Consensus 253 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~ll 328 (759)
.+-.+.+.|.+.|+++.+...|+.+.... +.+..+...|...|...+ ..++|..++.+....- +.|...|..+.
T Consensus 344 ~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~la 421 (1018)
T KOG2002|consen 344 PLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELA 421 (1018)
T ss_pred cccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHH
Confidence 45567788889999999999998887663 445566666666666554 4566666666666552 33666676666
Q ss_pred HHHHHcCChhHHHHHHHHHH----hCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCH------HhHH
Q 004362 329 DGYCKAGMISSADKILNDAI----FKGFVPDEFTYCSLINGLCQDGDVDRAMAVYVKALEK---GLKPSI------VLYN 395 (759)
Q Consensus 329 ~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~------~~~~ 395 (759)
..+....-+.. ...+..+. ..+..+.+...|.+...+...|+++.|...|...... ...++. .+--
T Consensus 422 ql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~Y 500 (1018)
T KOG2002|consen 422 QLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKY 500 (1018)
T ss_pred HHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHH
Confidence 66655443333 55555443 3444566777888888888888888888888877654 111222 1222
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc
Q 004362 396 TLIKGLSQQGLILQALQLMNEMSESGCCPDM-WTYNIVINGLCKMGCVSDANNLVNDAISKGYIPDIFTFNTLIDGYCKQ 474 (759)
Q Consensus 396 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 474 (759)
.+...+-..++.+.|.+.|..+.+. .|+- ..|..++......+...+|...++...... ..++..++.+...|.+.
T Consensus 501 Nlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k 577 (1018)
T KOG2002|consen 501 NLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKK 577 (1018)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhh
Confidence 3444455556777777777777765 2332 233333322233466677777777776653 34556666666677777
Q ss_pred CCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHH
Q 004362 475 LKMEIAIEILNTMWSHG-VTPDVITYNSLLNGLCK------------AAKSEDVMETFKTMIEKRCVPNIITYSILGESL 541 (759)
Q Consensus 475 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 541 (759)
..+..|.+-|..+.+.- ..+|..+.-+|.+.|.+ .+..+.|+++|.+.++.. +-|...-+.++.++
T Consensus 578 ~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVL 656 (1018)
T KOG2002|consen 578 SEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVL 656 (1018)
T ss_pred hhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhh
Confidence 77777777666655432 12455555555554432 123344555555554442 22444444555555
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHH
Q 004362 542 CKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMA 621 (759)
Q Consensus 542 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 621 (759)
+..|++.+|..+|.++.+.. .....+|..++++|..+|++-.|+++|+.....+...++..+...|++++.+.|.+.+|
T Consensus 657 A~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~ea 735 (1018)
T KOG2002|consen 657 AEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEA 735 (1018)
T ss_pred hhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHH
Confidence 55555555555555555441 22334445555555555555555555555555544444555555555555555555555
Q ss_pred HHHHHHHH
Q 004362 622 EKLFYEMS 629 (759)
Q Consensus 622 ~~~~~~~~ 629 (759)
.+.+..+.
T Consensus 736 k~~ll~a~ 743 (1018)
T KOG2002|consen 736 KEALLKAR 743 (1018)
T ss_pred HHHHHHHH
Confidence 55555544
No 14
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.6e-24 Score=219.20 Aligned_cols=624 Identities=13% Similarity=0.080 Sum_probs=457.3
Q ss_pred ChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHccCChhhHHHH
Q 004362 91 KVQEAVDVFERMDFYNCEPTVLSYNTIMNILVEYGYFSQVHKVYMRMRNKG--IVPDVYTFVIRIKSFCRTRRPHVALRL 168 (759)
Q Consensus 91 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~ 168 (759)
+++.|...|..+.... ++|+..+-.-.......+++..|+.+|....... ..||+ ...+..++.++|+.+.|...
T Consensus 145 ~~~~A~a~F~~Vl~~s-p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~--rIgig~Cf~kl~~~~~a~~a 221 (1018)
T KOG2002|consen 145 SMDDADAQFHFVLKQS-PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADV--RIGIGHCFWKLGMSEKALLA 221 (1018)
T ss_pred cHHHHHHHHHHHHhhC-CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCc--cchhhhHHHhccchhhHHHH
Confidence 3699999999988654 6676555444444556789999999999987653 34454 34556778899999999999
Q ss_pred HhhchhCCCCCCHHhHHHHHHHHHhc---CChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 004362 169 LKNMPSQGFEPNAVAYCTLIAGFYEE---NHNVEAYELFDEMLGMGISPDIATFNKLIHTLCKKGNVRESEKLFNKVLKR 245 (759)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 245 (759)
|..+.+.+ |.++.++..|...-... ..+..++.++...-..+. -+++..+.|...+.-.|+++.+..+...++..
T Consensus 222 ~~ralqLd-p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~-~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~ 299 (1018)
T KOG2002|consen 222 FERALQLD-PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENN-ENPVALNHLANHFYFKKDYERVWHLAEHAIKN 299 (1018)
T ss_pred HHHHHhcC-hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcC-CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHh
Confidence 99999886 34444444444433333 345667777777666543 37778899999999999999999999998876
Q ss_pred CCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC--cchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh
Q 004362 246 GVS--PNLFTFNMFIQGLCRKGAISEAISLLDSLGREDLTPD--VVTYNTLMCGLCKNSKVVEAEYYLHKMVNEGLEPDG 321 (759)
Q Consensus 246 ~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 321 (759)
... .-...|-.+.++|...|++++|...|.+..+. .++ +..+.-+...+...|+.+.+...|+..... .+-+.
T Consensus 300 t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~-~p~~~ 376 (1018)
T KOG2002|consen 300 TENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ-LPNNY 376 (1018)
T ss_pred hhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHh-CcchH
Confidence 321 12235778899999999999999999998766 343 344556789999999999999999999986 34466
Q ss_pred hcHHHHHHHHHHcC----ChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHH----HcCCCCCHHh
Q 004362 322 FSYNAVIDGYCKAG----MISSADKILNDAIFKGFVPDEFTYCSLINGLCQDGDVDRAMAVYVKAL----EKGLKPSIVL 393 (759)
Q Consensus 322 ~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~~ 393 (759)
.+...+...|+..+ ..+.|..++.+..... +.|...|..+...+...+-+.. +..|..+. ..+..+.+..
T Consensus 377 etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~ 454 (1018)
T KOG2002|consen 377 ETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEV 454 (1018)
T ss_pred HHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHH
Confidence 78888888887765 5677778887777664 4477788777777766554444 77776655 3455578899
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCC------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhH
Q 004362 394 YNTLIKGLSQQGLILQALQLMNEMSES---GCCP------DMWTYNIVINGLCKMGCVSDANNLVNDAISKGYIPDIFTF 464 (759)
Q Consensus 394 ~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 464 (759)
.|.+...+...|++.+|...|...... ...+ +..+--.+.+.....++++.|.+.|..+.+.. +.-+..|
T Consensus 455 LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~y 533 (1018)
T KOG2002|consen 455 LNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAY 533 (1018)
T ss_pred HHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHH
Confidence 999999999999999999999887654 1122 22233345566667889999999999999873 3334455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCChhcHHHHHHHHHh
Q 004362 465 NTLIDGYCKQLKMEIAIEILNTMWSHGVTPDVITYNSLLNGLCKAAKSEDVMETFKTMIEKR-CVPNIITYSILGESLCK 543 (759)
Q Consensus 465 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~ 543 (759)
..++-+....++..+|...++.....+ ..++..+..+...+.....+..|.+-|....+.. ..+|..+...|++.|..
T Consensus 534 lRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~ 612 (1018)
T KOG2002|consen 534 LRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQ 612 (1018)
T ss_pred HHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHH
Confidence 555544445678899999999988764 3467778888888988889999998888877652 23566777777776642
Q ss_pred ------------cCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHH
Q 004362 544 ------------AHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINA 611 (759)
Q Consensus 544 ------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 611 (759)
.+..++|+++|.++++. .|-+..+-+.+.-++...|++.+|..+|.++.+. ......+|.+++++
T Consensus 613 ~l~~~~rn~ek~kk~~~KAlq~y~kvL~~-dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa--~~~~~dv~lNlah~ 689 (1018)
T KOG2002|consen 613 ALHNPSRNPEKEKKHQEKALQLYGKVLRN-DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREA--TSDFEDVWLNLAHC 689 (1018)
T ss_pred HhcccccChHHHHHHHHHHHHHHHHHHhc-CcchhhhccchhhhhhhccCchHHHHHHHHHHHH--HhhCCceeeeHHHH
Confidence 34578899999999987 4667777888888999999999999999999987 44567899999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH-HHHHH-------
Q 004362 612 FSEKLNFYMAEKLFYEMSEKGCPPD-NYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSLSTIGR-VINCL------- 682 (759)
Q Consensus 612 ~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~-l~~~~------- 682 (759)
|...|+|..|+++|+...+...+.+ ..+...|+.++...|.+.+|...+..+.. +.|.++.... ++-.+
T Consensus 690 ~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~--~~p~~~~v~FN~a~v~kkla~s~ 767 (1018)
T KOG2002|consen 690 YVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARH--LAPSNTSVKFNLALVLKKLAESI 767 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--hCCccchHHhHHHHHHHHHHHHH
Confidence 9999999999999999888755544 78889999999999999999999999998 7787655421 11111
Q ss_pred ------------HhcCcHHHHHHHHHHHHHCCCC---CchHHHHHhccccccccchHHHHHHHh
Q 004362 683 ------------CVDHRVHEAVGFVHLMVQKGIV---PEVVNTIFEADKREVASPKIVVEDLLK 731 (759)
Q Consensus 683 ------------~~~g~~~~A~~~~~~~~~~~~~---p~~~~~~~~~~~~~~~~a~~~~~~~~~ 731 (759)
...+..+.|.++|..+...+-. +.....-...++.-..+|..-..++.+
T Consensus 768 lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~r~~~~~~~~~a~~c~~ll~~a~~~~~~Aq~ 831 (1018)
T KOG2002|consen 768 LRLEKRTLEEVLEAVKELEEARRLFTELSKNGDKRISKTVIAQEAQLCKDLLKQALEHVAQAQE 831 (1018)
T ss_pred HhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 1224566677777777663322 223333333344444555554444433
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.96 E-value=3.8e-25 Score=211.98 Aligned_cols=436 Identities=17% Similarity=0.149 Sum_probs=252.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhC
Q 004362 220 NKLIHTLCKKGNVRESEKLFNKVLKRGVSPNLFTFNMFIQGLCRKGAISEAISLLDSLGREDLTPDVVTYNTLMCGLCKN 299 (759)
Q Consensus 220 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 299 (759)
..|.+-..+.|++.+|++.-..+-..+.. +......+-..+....+.+....--....+.. +.-..+|+.+...+-..
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d~t-~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQEDPT-NTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccCCC-cccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHh
Confidence 34445555667777776665544433211 22222222334444444444443333333221 33455666666666666
Q ss_pred CChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcc-cHHHHHHHHHhcCCHHHHHHH
Q 004362 300 SKVVEAEYYLHKMVNEGLEPDGFSYNAVIDGYCKAGMISSADKILNDAIFKGFVPDEF-TYCSLINGLCQDGDVDRAMAV 378 (759)
Q Consensus 300 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~ 378 (759)
|+++.|+.+++.+.+.... ....|..+..++...|+.+.|.+.|...++. .|+.. ..+.+.......|++.+|...
T Consensus 130 g~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred chHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHH
Confidence 7777777777666665221 3455666666666666666666666666654 23322 223344444556666666666
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 004362 379 YVKALEKGLKPSIVLYNTLIKGLSQQGLILQALQLMNEMSESGCCPD-MWTYNIVINGLCKMGCVSDANNLVNDAISKGY 457 (759)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 457 (759)
|.++++..+. -...|+.|...+..+|+...|+..|++..+. .|+ ...|..+...|...+.+++|...+.+.....
T Consensus 207 YlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr- 282 (966)
T KOG4626|consen 207 YLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR- 282 (966)
T ss_pred HHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-
Confidence 6666665433 3445666666666666666666666666654 233 3355666666666666666666666655542
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHH
Q 004362 458 IPDIFTFNTLIDGYCKQLKMEIAIEILNTMWSHGVTPD-VITYNSLLNGLCKAAKSEDVMETFKTMIEKRCVPNIITYSI 536 (759)
Q Consensus 458 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 536 (759)
+.....+..+...|..+|..+.|+..|++.++. .|+ ...|+.+..++-..|+..+|...|++.+... +....+.+.
T Consensus 283 pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~N 359 (966)
T KOG4626|consen 283 PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNN 359 (966)
T ss_pred CcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHH
Confidence 234455555555666666666666666666664 232 4566666666666666666666666666542 223445666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcC
Q 004362 537 LGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKL 616 (759)
Q Consensus 537 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 616 (759)
++..+...|.+++|..+|....+. .+.-....+.+...|...|++++|+..|+.++.. .|....+|++++..|-..|
T Consensus 360 Lgni~~E~~~~e~A~~ly~~al~v-~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g 436 (966)
T KOG4626|consen 360 LGNIYREQGKIEEATRLYLKALEV-FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMG 436 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHhh-ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhh
Confidence 666666666666666666666653 2333445566666666666666666666666665 5666666666666666666
Q ss_pred CHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH
Q 004362 617 NFYMAEKLFYEMSEKGCPPD-NYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSLST 674 (759)
Q Consensus 617 ~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 674 (759)
+.+.|++.|.+++. +.|. ...++.|+.+|..+|+..+|+..|+.+++ +.||.+.
T Consensus 437 ~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpd 491 (966)
T KOG4626|consen 437 DVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPD 491 (966)
T ss_pred hHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCch
Confidence 66666666666663 3455 55666666666666666666666666666 6666443
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.95 E-value=1e-24 Score=209.01 Aligned_cols=442 Identities=14% Similarity=0.125 Sum_probs=342.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHH
Q 004362 254 FNMFIQGLCRKGAISEAISLLDSLGREDLTPDVVTYNTLMCGLCKNSKVVEAEYYLHKMVNEGLEPDGFSYNAVIDGYCK 333 (759)
Q Consensus 254 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 333 (759)
...|..-..+.|++++|++.-..+-..+ +.+....-.+-..+.+..+.++....-....+. .+.-..+|..+...+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHH
Confidence 4456666678899999988877766543 223333333445666667777766554444443 23355688888888888
Q ss_pred cCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHH
Q 004362 334 AGMISSADKILNDAIFKGFVPDEFTYCSLINGLCQDGDVDRAMAVYVKALEKGLKPSIVLYNTLIKGLSQQGLILQALQL 413 (759)
Q Consensus 334 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 413 (759)
.|+++.|+..++.+++.. +.....|..+..++...|+.+.|.++|.+.++.++. .....+.+.......|+..+|...
T Consensus 129 rg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~-l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPD-LYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred hchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcc-hhhhhcchhHHHHhhcccchhHHH
Confidence 999999999999988874 225678888899999999999999999888876432 233344455555667889999888
Q ss_pred HHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004362 414 MNEMSESGCCPD-MWTYNIVINGLCKMGCVSDANNLVNDAISKGYIPDIFTFNTLIDGYCKQLKMEIAIEILNTMWSHGV 492 (759)
Q Consensus 414 ~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 492 (759)
+.+.++. .|. ...|+.+...+..+|+...|+..|++.++.. +.-...|-.|...|...+.+++|...|.+.....
T Consensus 207 YlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr- 282 (966)
T KOG4626|consen 207 YLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR- 282 (966)
T ss_pred HHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-
Confidence 8887775 333 4577888888888999999999999988763 2245678888999999999999999998888753
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHH
Q 004362 493 TPDVITYNSLLNGLCKAAKSEDVMETFKTMIEKRCVPN-IITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGT 571 (759)
Q Consensus 493 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 571 (759)
+.....+..+...|..+|..+-|+..|++.++. .|+ ...|+.++.++-..|++.+|...|.+.+.. .+....+.+.
T Consensus 283 pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l-~p~hadam~N 359 (966)
T KOG4626|consen 283 PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL-CPNHADAMNN 359 (966)
T ss_pred CcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh-CCccHHHHHH
Confidence 224667778888888999999999999998886 344 568899999999999999999999999886 4556777888
Q ss_pred HHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhc
Q 004362 572 LINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPD-NYTYRIMIDSFCKT 650 (759)
Q Consensus 572 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 650 (759)
+...|...|.+++|..+|....+- .|.-....++++..|-++|++++|+..|++++ .+.|+ ...|+.++..|-..
T Consensus 360 Lgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal--rI~P~fAda~~NmGnt~ke~ 435 (966)
T KOG4626|consen 360 LGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL--RIKPTFADALSNMGNTYKEM 435 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH--hcCchHHHHHHhcchHHHHh
Confidence 999999999999999999999888 78888889999999999999999999999988 56788 78899999999999
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCcHHHHHHHHHHHHHCCCCCc---hHHHHHhc
Q 004362 651 GGINSGYCLLLENIDKGFIPSLSTI-GRVINCLCVDHRVHEAVGFVHLMVQKGIVPE---VVNTIFEA 714 (759)
Q Consensus 651 g~~~~A~~~~~~~~~~g~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~~~ 714 (759)
|+.+.|+..+.+++. +.|..... ..+...+-..|+..+|+..|+..+. ++|| .++.++.+
T Consensus 436 g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~ 499 (966)
T KOG4626|consen 436 GDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHC 499 (966)
T ss_pred hhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHH
Confidence 999999999999998 88875544 4555555678999999999998886 5665 55555544
No 17
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.94 E-value=7.3e-20 Score=177.20 Aligned_cols=496 Identities=13% Similarity=0.065 Sum_probs=328.2
Q ss_pred ChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhCCChHHHHHHHH
Q 004362 231 NVRESEKLFNKVLKRGVSPNLFTFNMFIQGLCRKGAISEAISLLDSLGREDLTPDVVTYNTLMCGLCKNSKVVEAEYYLH 310 (759)
Q Consensus 231 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 310 (759)
+.+.|+-++.+..+- ++.+...|. +|.+..-++.|..+++...+. ++.+...|.+-...--.+|+.+...+++.
T Consensus 391 ~~~darilL~rAvec-cp~s~dLwl----AlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~ 464 (913)
T KOG0495|consen 391 EPEDARILLERAVEC-CPQSMDLWL----ALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIID 464 (913)
T ss_pred ChHHHHHHHHHHHHh-ccchHHHHH----HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 334455555555443 222222232 233334445555555554422 24444555444444445555555555544
Q ss_pred H----HHHCCCCCChhcHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC--cccHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004362 311 K----MVNEGLEPDGFSYNAVIDGYCKAGMISSADKILNDAIFKGFVPD--EFTYCSLINGLCQDGDVDRAMAVYVKALE 384 (759)
Q Consensus 311 ~----~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 384 (759)
+ +...|+..+...|..-...|-..|..-.+..+....+..|+... ..++..-...|.+.+.++-|+.+|..+++
T Consensus 465 rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alq 544 (913)
T KOG0495|consen 465 RGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQ 544 (913)
T ss_pred HHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHh
Confidence 3 33346666666666666667777777777777777776665432 24666667777777888888888877776
Q ss_pred cCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhH
Q 004362 385 KGLKPSIVLYNTLIKGLSQQGLILQALQLMNEMSESGCCPDMWTYNIVINGLCKMGCVSDANNLVNDAISKGYIPDIFTF 464 (759)
Q Consensus 385 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 464 (759)
.-+. +...|......--..|..++...+|++.... ++-....|......+...|++..|..++..+.+.. +.+...|
T Consensus 545 vfp~-k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiw 621 (913)
T KOG0495|consen 545 VFPC-KKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIW 621 (913)
T ss_pred hccc-hhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHH
Confidence 5443 5566666666666667777777777777765 33344455555566667788888888888777764 3366777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhc
Q 004362 465 NTLIDGYCKQLKMEIAIEILNTMWSHGVTPDVITYNSLLNGLCKAAKSEDVMETFKTMIEKRCVPNIITYSILGESLCKA 544 (759)
Q Consensus 465 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 544 (759)
-.-+.......+++.|..+|.+.... .|+...|.--+..---.++.++|++++++.++. ++.-...|..+++.+.+.
T Consensus 622 laavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~ 698 (913)
T KOG0495|consen 622 LAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQM 698 (913)
T ss_pred HHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHH
Confidence 77777777788888888888877764 456666766666666677888888888777775 233345677778888888
Q ss_pred CCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHH
Q 004362 545 HKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKL 624 (759)
Q Consensus 545 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 624 (759)
++.+.|...|..-.+. +|..+..|..+...-.+.|.+-+|..++++..-. .|.+...|...++.-.+.|+.+.|..+
T Consensus 699 ~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlk--NPk~~~lwle~Ir~ElR~gn~~~a~~l 775 (913)
T KOG0495|consen 699 ENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK--NPKNALLWLESIRMELRAGNKEQAELL 775 (913)
T ss_pred HHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc--CCCcchhHHHHHHHHHHcCCHHHHHHH
Confidence 8888888887777765 5666777777777777888888888888888777 788888888888888888888888888
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHCCCC
Q 004362 625 FYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSLSTIGRVINCLCVDHRVHEAVGFVHLMVQKGIV 704 (759)
Q Consensus 625 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 704 (759)
..++++. ++.+...|..-++..-+.++-..+...+++ ..-|......+...+....+.++|.++|.+.+. +.
T Consensus 776 makALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk--~d 847 (913)
T KOG0495|consen 776 MAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVK--KD 847 (913)
T ss_pred HHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc--cC
Confidence 8777765 455567777777766666665555555554 333555555566666777788888888888876 55
Q ss_pred Cc---hHHHHHhc--cccccccchHHHHHHHhcCCCchHHHHHHHhhhhh
Q 004362 705 PE---VVNTIFEA--DKREVASPKIVVEDLLKKSHITYYAYELLFDGIRD 749 (759)
Q Consensus 705 p~---~~~~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 749 (759)
|| .|.-++.. .+|.-++-..++.+.....|.....|.-.+...++
T Consensus 848 ~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avSK~i~n 897 (913)
T KOG0495|consen 848 PDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVSKDIKN 897 (913)
T ss_pred CccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHhhhHHh
Confidence 65 44433333 77777888888888888888777777766655443
No 18
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.92 E-value=1.5e-18 Score=175.27 Aligned_cols=336 Identities=15% Similarity=0.109 Sum_probs=188.3
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 004362 42 TYKYMIDKLGFHGNFEEMENLLLEMRMDVDDSLLEGVHIGVMRNYGRRGKVQEAVDVFERMDFYNCEPTVLSYNTIMNIL 121 (759)
Q Consensus 42 ~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 121 (759)
..-..++.+...|++++|..++.++++++|. ...+|..|+.+|-.+|+.+++...+-.+...+ +.|...|..+....
T Consensus 141 ~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~--~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls 217 (895)
T KOG2076|consen 141 QLLGEANNLFARGDLEEAEEILMEVIKQDPR--NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLS 217 (895)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCcc--chhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 3344455555667777777777777777776 66777777777777777777777665554333 44556677777777
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHhhchhCCCCCCHHhH----HHHHHHHHhcCCh
Q 004362 122 VEYGYFSQVHKVYMRMRNKGIVPDVYTFVIRIKSFCRTRRPHVALRLLKNMPSQGFEPNAVAY----CTLIAGFYEENHN 197 (759)
Q Consensus 122 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~ 197 (759)
.+.|++.+|.-+|.+.++.. +++....---...|-+.|+...|..-|.++.....+.|..-. -.++..+...++.
T Consensus 218 ~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~ 296 (895)
T KOG2076|consen 218 EQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNER 296 (895)
T ss_pred HhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHH
Confidence 77777777777777777754 334444444555667777777777777777666422222222 2234445556666
Q ss_pred hHHHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHH----------------------
Q 004362 198 VEAYELFDEMLGMG-ISPDIATFNKLIHTLCKKGNVRESEKLFNKVLKRGVSPNLFTF---------------------- 254 (759)
Q Consensus 198 ~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---------------------- 254 (759)
+.|++.++.....+ -..+...++.++..+.+...++.+.............+|..-|
T Consensus 297 e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~ 376 (895)
T KOG2076|consen 297 ERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSY 376 (895)
T ss_pred HHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCc
Confidence 77777776665521 1223345666666677777777776666655542111221111
Q ss_pred ----HHHHHHHHhcCCHHHHHHHHHHHhhCC--CCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhcHHHHH
Q 004362 255 ----NMFIQGLCRKGAISEAISLLDSLGRED--LTPDVVTYNTLMCGLCKNSKVVEAEYYLHKMVNEGLEPDGFSYNAVI 328 (759)
Q Consensus 255 ----~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 328 (759)
..++-++.+....+....+..-+...+ +..+...|.-+..++...|.+.+|+.+|..+......-+...|-.+.
T Consensus 377 ~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a 456 (895)
T KOG2076|consen 377 DLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLA 456 (895)
T ss_pred cchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHH
Confidence 011112222222222222222222222 22344455556666666666666666666666543333444566666
Q ss_pred HHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHH
Q 004362 329 DGYCKAGMISSADKILNDAIFKGFVPDEFTYCSLINGLCQDGDVDRAMAVYVKA 382 (759)
Q Consensus 329 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 382 (759)
.+|...|.++.|.+.|+.++... +.+......|...+.+.|+.++|.+.+..+
T Consensus 457 ~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~ 509 (895)
T KOG2076|consen 457 RCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQI 509 (895)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcc
Confidence 66666666666666666665542 123344445555566666666666666553
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.92 E-value=3.1e-20 Score=200.06 Aligned_cols=431 Identities=11% Similarity=-0.045 Sum_probs=292.8
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q 004362 288 TYNTLMCGLCKNSKVVEAEYYLHKMVNEGLEPDGFSYNAVIDGYCKAGMISSADKILNDAIFKGFVPDEFTYCSLINGLC 367 (759)
Q Consensus 288 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 367 (759)
.+......+.+.|++++|+..|++.... .|+...|..+..+|.+.|+++.|++.++.+++.+ +.+...+..+..+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 3556667788888999999998888764 5667778888888888889999988888888764 225567778888888
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 004362 368 QDGDVDRAMAVYVKALEKGLKPSIVLYNTLIKGLSQQGLILQALQLMNEMSESGCCPDMWTYNIVINGLCKMGCVSDANN 447 (759)
Q Consensus 368 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 447 (759)
..|++++|+..|..+...+...+.. ...++..+.. ..+........+.. +++...+..+.. +...........
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~ 278 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQ-SAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPA 278 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchh
Confidence 8889888888887665543221221 2222222211 12223333332221 112222222222 221111111111
Q ss_pred HHHHHHHCCCCCC-HhhHHHHHHHH---HhcCCHHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004362 448 LVNDAISKGYIPD-IFTFNTLIDGY---CKQLKMEIAIEILNTMWSHG-VTP-DVITYNSLLNGLCKAAKSEDVMETFKT 521 (759)
Q Consensus 448 ~~~~~~~~~~~~~-~~~~~~l~~~~---~~~~~~~~A~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 521 (759)
-+...... .+. ...+..+...+ ...+++++|.+.|+.....+ ..| ....+..+..++...|++++|+..|++
T Consensus 279 ~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~k 356 (615)
T TIGR00990 279 GLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSK 356 (615)
T ss_pred hhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 11111111 111 11111111111 23468889999999988764 223 456677888888889999999999999
Q ss_pred HHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCc
Q 004362 522 MIEKRCVPNIITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHT 601 (759)
Q Consensus 522 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 601 (759)
.++.. +.+...|..++..+...|++++|...++++++. .+.+..++..++.++...|++++|+..|+++... .|++
T Consensus 357 al~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~ 432 (615)
T TIGR00990 357 SIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKL-NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDF 432 (615)
T ss_pred HHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccC
Confidence 88763 224567888888899999999999999999876 3556788888999999999999999999999988 7888
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH-H-----
Q 004362 602 TATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSLST-I----- 675 (759)
Q Consensus 602 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~-~----- 675 (759)
...+..++.++...|++++|+..++++++.. +.++..++.++.++...|++++|+..|+++++ +.|+... +
T Consensus 433 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~--l~p~~~~~~~~~~~ 509 (615)
T TIGR00990 433 IFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE--LEKETKPMYMNVLP 509 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCccccccccHHH
Confidence 8889999999999999999999999988652 33478889999999999999999999999998 6664211 1
Q ss_pred -HHHHHHH-HhcCcHHHHHHHHHHHHHCCCCCch---HHHHHhc--cccccccchHHHHHHHhcCCCchHH
Q 004362 676 -GRVINCL-CVDHRVHEAVGFVHLMVQKGIVPEV---VNTIFEA--DKREVASPKIVVEDLLKKSHITYYA 739 (759)
Q Consensus 676 -~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~ 739 (759)
......+ ...|++++|.++++++.. +.|+. +..+... ..|++++|...++++.+........
T Consensus 510 l~~~a~~~~~~~~~~~eA~~~~~kAl~--l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~ 578 (615)
T TIGR00990 510 LINKALALFQWKQDFIEAENLCEKALI--IDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGEL 578 (615)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHH
Confidence 1111222 346999999999999887 45663 2333333 7899999999999998887664443
No 20
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.92 E-value=1.3e-19 Score=195.24 Aligned_cols=253 Identities=13% Similarity=0.083 Sum_probs=129.3
Q ss_pred CCHHHHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 004362 405 GLILQALQLMNEMSESG-CCP-DMWTYNIVINGLCKMGCVSDANNLVNDAISKGYIPDIFTFNTLIDGYCKQLKMEIAIE 482 (759)
Q Consensus 405 ~~~~~a~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 482 (759)
+++++|.+.|+.....+ ..| ....+..+...+...|++++|...++..+... +.....|..+...+...|++++|..
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~ 386 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEE 386 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 45556666666555442 112 22344444455555566666666665555442 2233445555555555666666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004362 483 ILNTMWSHGVTPDVITYNSLLNGLCKAAKSEDVMETFKTMIEKRCVPNIITYSILGESLCKAHKITEAFNLLEEMENKGL 562 (759)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 562 (759)
.|+++.+.. +.+...|..+..++...|++++|+..|++.++.. +.+...+..++.++...|++++|+..+++.++. .
T Consensus 387 ~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~ 463 (615)
T TIGR00990 387 DFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-F 463 (615)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-C
Confidence 666555542 2234555555555555566666666665555542 223444455555555556666666666555543 3
Q ss_pred CccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhH-------HHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 004362 563 TLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATY-------NIMINAFSEKLNFYMAEKLFYEMSEKGCPP 635 (759)
Q Consensus 563 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 635 (759)
+.+...+..+..++...|++++|++.|+++... .|.+...+ +.....+...|++++|+++++++++. .|
T Consensus 464 P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l--~p 539 (615)
T TIGR00990 464 PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL--EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII--DP 539 (615)
T ss_pred CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CC
Confidence 334555555555555566666666666555554 22211111 11111222345566666666555533 23
Q ss_pred C-HhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004362 636 D-NYTYRIMIDSFCKTGGINSGYCLLLENID 665 (759)
Q Consensus 636 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 665 (759)
+ ..++..++.++...|++++|+.+|+++++
T Consensus 540 ~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 540 ECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3 34455555556666666666666666555
No 21
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.91 E-value=5.3e-18 Score=171.39 Aligned_cols=660 Identities=12% Similarity=0.031 Sum_probs=423.4
Q ss_pred cCCChHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHH
Q 004362 16 HQKNPLTALEMFNSVKREDGFKHTLLTYKYMIDKLGFHGNFEEMENLLLEMRMDVDDSLLEGVHIGVMRNYGRRGKVQEA 95 (759)
Q Consensus 16 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 95 (759)
..|+.++|.+++..+.++.+. .+..|..|+.+|-..|+.+.+...+-.+-..+|. +.+.|..+.....++|+++.|
T Consensus 151 arg~~eeA~~i~~EvIkqdp~--~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~--d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQDPR--NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK--DYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HhCCHHHHHHHHHHHHHhCcc--chhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC--ChHHHHHHHHHHHhcccHHHH
Confidence 579999999999999998654 6778899999999999999999999888888888 889999999999999999999
Q ss_pred HHHHHHhhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCChhhHHHHHhh
Q 004362 96 VDVFERMDFYNCEPTVLSYNTIMNILVEYGYFSQVHKVYMRMRNKGIVPDV----YTFVIRIKSFCRTRRPHVALRLLKN 171 (759)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~ 171 (759)
.-+|.++.... +++......-...|-+.|+...|...|.++.....+.|. ..--.+++.+...++.+.|.+.++.
T Consensus 227 ~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~ 305 (895)
T KOG2076|consen 227 RYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEG 305 (895)
T ss_pred HHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999999776 566666666788899999999999999999986521121 1222346677888888999999998
Q ss_pred chhCC-CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh----------------------hH----HHHHH
Q 004362 172 MPSQG-FEPNAVAYCTLIAGFYEENHNVEAYELFDEMLGMGISPDIA----------------------TF----NKLIH 224 (759)
Q Consensus 172 ~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----------------------~~----~~l~~ 224 (759)
..+.. -..+...++.++..+.+...++.+......+......+|.. .| ..++-
T Consensus 306 ~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~i 385 (895)
T KOG2076|consen 306 ALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMI 385 (895)
T ss_pred HHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhh
Confidence 87732 13455678899999999999999988887776521111111 11 12233
Q ss_pred HHHhcCChhHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhCCCh
Q 004362 225 TLCKKGNVRESEKLFNKVLKRG--VSPNLFTFNMFIQGLCRKGAISEAISLLDSLGREDLTPDVVTYNTLMCGLCKNSKV 302 (759)
Q Consensus 225 ~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 302 (759)
++.+.+..+....+........ +..+...|.-+..+|...|.+..|+.+|..+.......+...|-.+..+|...|.+
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~ 465 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY 465 (895)
T ss_pred hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH
Confidence 3445555555555666666655 44456788899999999999999999999998775555677899999999999999
Q ss_pred HHHHHHHHHHHHCCCCCChhcHHHHHHHHHHcCChhHHHHHHHHHHhC--------CCCCCcccHHHHHHHHHhcCCHHH
Q 004362 303 VEAEYYLHKMVNEGLEPDGFSYNAVIDGYCKAGMISSADKILNDAIFK--------GFVPDEFTYCSLINGLCQDGDVDR 374 (759)
Q Consensus 303 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~ 374 (759)
++|.+.|+..+... +-+...-..+...+.+.|+.++|.+.++.+... +..|+..........+.+.|+.++
T Consensus 466 e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~ 544 (895)
T KOG2076|consen 466 EEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREE 544 (895)
T ss_pred HHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHH
Confidence 99999999999862 224445566777889999999999999986522 223333344445566677777776
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHH-----
Q 004362 375 AMAVYVKALEKGLKPSIVLYNTLIKGLSQQGLILQALQLMNEMSESGCCPDMWTYNIVINGLCKMGCVSDANNLV----- 449 (759)
Q Consensus 375 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----- 449 (759)
-...-..++... ....++. -+..++... .....+......+...++.+-.+.++......-.
T Consensus 545 fi~t~~~Lv~~~------~~~~~~f-----~~~~k~r~~--~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~ 611 (895)
T KOG2076|consen 545 FINTASTLVDDF------LKKRYIF-----PRNKKKRRR--AIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTE 611 (895)
T ss_pred HHHHHHHHHHHH------HHHHHhc-----chHHHHHHH--hhccccccccchhHHHHHHHHhccCchHHhhhcccchhh
Confidence 555444444311 0000000 000000000 0000001112222223333333333222111111
Q ss_pred -HHHHHCCCCCCH--hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHH----HHHHHHHHHHhcCCHHHHHHHHHH
Q 004362 450 -NDAISKGYIPDI--FTFNTLIDGYCKQLKMEIAIEILNTMWSHGV-TPDVI----TYNSLLNGLCKAAKSEDVMETFKT 521 (759)
Q Consensus 450 -~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~ 521 (759)
......+...+. ..+..++..+++.+.+++|+.+...+....+ .-+.. .-...+.+....+++..|...++.
T Consensus 612 ~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~ 691 (895)
T KOG2076|consen 612 FRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRS 691 (895)
T ss_pred hhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 111111211111 2344556677788888888888777765421 11222 223344556677888888888888
Q ss_pred HHHc-CC--CCC-hhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccC
Q 004362 522 MIEK-RC--VPN-IITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYK 597 (759)
Q Consensus 522 ~~~~-~~--~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 597 (759)
|+.. +. .|. ...|+...+.....++----.+.+..+.......++............++.+..|+..|-++...
T Consensus 692 ~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~-- 769 (895)
T KOG2076|consen 692 VITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQ-- 769 (895)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHh--
Confidence 7765 11 122 22344344455555544333444444433222222333333344555677888888888887777
Q ss_pred CCCchhhHHHHHHHHH----------hcCCHHHHHHHHHHHHHcCCCC-CHhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 004362 598 ISHTTATYNIMINAFS----------EKLNFYMAEKLFYEMSEKGCPP-DNYTYRIMIDSFCKTGGINSGYCLLLENIDK 666 (759)
Q Consensus 598 ~~~~~~~~~~l~~~~~----------~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 666 (759)
.|++|..-..++-++. ++-..-.+..++++..+..... ...++..++.+|-..|-.--|..+|+++++
T Consensus 770 ~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~- 848 (895)
T KOG2076|consen 770 NPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLE- 848 (895)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhC-
Confidence 6766666555554443 2234556666666665543222 367788888999999999999999999887
Q ss_pred CCCCC-------------HHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 004362 667 GFIPS-------------LSTIGRVINCLCVDHRVHEAVGFVHLM 698 (759)
Q Consensus 667 g~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~ 698 (759)
+.|. ....+.+.-.|...|+..-|..++.+-
T Consensus 849 -~~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~ky 892 (895)
T KOG2076|consen 849 -VSPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILEKY 892 (895)
T ss_pred -CCccccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHHhh
Confidence 4331 122233444445778998888887653
No 22
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.91 E-value=1.9e-20 Score=200.35 Aligned_cols=335 Identities=9% Similarity=0.016 Sum_probs=172.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 004362 324 YNAVIDGYCKAGMISSADKILNDAIFKGFVPDEFTYCSLINGLCQDGDVDRAMAVYVKALEKGLKPSIVLYNTLIKGLSQ 403 (759)
Q Consensus 324 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 403 (759)
...++..+.+.|+++.|..+++..+..... +......++.+....|+++.|...++++....+. +...+..+...+..
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~~ 122 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVLLK 122 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHH
Confidence 334445555556666666666655554322 2333444445555566666666666666555443 44555555555566
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 004362 404 QGLILQALQLMNEMSESGCCPDMWTYNIVINGLCKMGCVSDANNLVNDAISKGYIPDIFTFNTLIDGYCKQLKMEIAIEI 483 (759)
Q Consensus 404 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 483 (759)
.|++++|...++++.... +.+...+..+...+...|++++|...++.+...... +...+..+ ..+...|++++|...
T Consensus 123 ~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 123 SKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred cCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHH
Confidence 666666666666655532 123444555555555566666666655555443211 22222222 224555566666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHH----HHHHHHHHHH
Q 004362 484 LNTMWSHGVTPDVITYNSLLNGLCKAAKSEDVMETFKTMIEKRCVPNIITYSILGESLCKAHKITE----AFNLLEEMEN 559 (759)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~ 559 (759)
++.+.+....++...+..+..++...|++++|+..++++.... +.+...+..++.++...|++++ |...++++.+
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 5555544322233333333445555556666666555555542 2234445555555555555553 4555555555
Q ss_pred CCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-h
Q 004362 560 KGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDN-Y 638 (759)
Q Consensus 560 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~ 638 (759)
. .|.+...+..++..+...|++++|+..++++... .|.+...+..++.++...|++++|+..|+++.+. .|+. .
T Consensus 279 l-~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~ 353 (656)
T PRK15174 279 F-NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSK 353 (656)
T ss_pred h-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchH
Confidence 4 2334455555555555555566665555555555 4555555555555555555566665555555543 3332 2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 004362 639 TYRIMIDSFCKTGGINSGYCLLLENIDKGFIPS 671 (759)
Q Consensus 639 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 671 (759)
.+..++.++...|++++|+..|+++++ ..|+
T Consensus 354 ~~~~~a~al~~~G~~deA~~~l~~al~--~~P~ 384 (656)
T PRK15174 354 WNRYAAAALLQAGKTSEAESVFEHYIQ--ARAS 384 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hChh
Confidence 223334455555555666655555555 4444
No 23
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.91 E-value=1.3e-16 Score=154.91 Aligned_cols=622 Identities=11% Similarity=0.009 Sum_probs=491.6
Q ss_pred hCCChHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCChhHHH
Q 004362 52 FHGNFEEMENLLLEMRMDVDDSLLEGVHIGVMRNYGRRGKVQEAVDVFERMDFYNCEPTVLSYNTIMNILVEYGYFSQVH 131 (759)
Q Consensus 52 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 131 (759)
..++...|+.+++...+.+|. .++.|..-++.--..|++..|..+..+=.+.. +.+...|..-+ +....+.|.
T Consensus 263 dl~DikKaR~llKSvretnP~--hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~c-prSeDvWLeai----RLhp~d~aK 335 (913)
T KOG0495|consen 263 DLEDIKKARLLLKSVRETNPK--HPPGWIASARLEEVAGKLSVARNLIMKGCEEC-PRSEDVWLEAI----RLHPPDVAK 335 (913)
T ss_pred cHHHHHHHHHHHHHHHhcCCC--CCchHHHHHHHHHHhhHHHHHHHHHHHHHhhC-CchHHHHHHHH----hcCChHHHH
Confidence 345778899999999999988 78888888888899999999999887766433 55666675544 445667788
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHhhchhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 004362 132 KVYMRMRNKGIVPDVYTFVIRIKSFCRTRRPHVALRLLKNMPSQGFEPNAVAYCTLIAGFYEENHNVEAYELFDEMLGMG 211 (759)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 211 (759)
.+.-..++.- +.++..|...+.. ..+...=.+++....+. +|.++..|-..+. ..+.++|..++.+..+-
T Consensus 336 ~vvA~Avr~~-P~Sv~lW~kA~dL---E~~~~~K~RVlRKALe~-iP~sv~LWKaAVe----lE~~~darilL~rAvec- 405 (913)
T KOG0495|consen 336 TVVANAVRFL-PTSVRLWLKAADL---ESDTKNKKRVLRKALEH-IPRSVRLWKAAVE----LEEPEDARILLERAVEC- 405 (913)
T ss_pred HHHHHHHHhC-CCChhhhhhHHhh---hhHHHHHHHHHHHHHHh-CCchHHHHHHHHh----ccChHHHHHHHHHHHHh-
Confidence 8877777642 3344445433322 22333445666666665 3566777766543 45666788888888765
Q ss_pred CCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH----hhCCCCCCcc
Q 004362 212 ISPDIATFNKLIHTLCKKGNVRESEKLFNKVLKRGVSPNLFTFNMFIQGLCRKGAISEAISLLDSL----GREDLTPDVV 287 (759)
Q Consensus 212 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~ 287 (759)
++.+.. |..++.+...++.|..+++...+. ++.+..+|.+-...--.+|+.+.+.+++++- ...|+..+..
T Consensus 406 cp~s~d----LwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rd 480 (913)
T KOG0495|consen 406 CPQSMD----LWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRD 480 (913)
T ss_pred ccchHH----HHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHH
Confidence 222332 445667777889999999998775 6778889988888888899999998888763 4457778888
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC--hhcHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 004362 288 TYNTLMCGLCKNSKVVEAEYYLHKMVNEGLEPD--GFSYNAVIDGYCKAGMISSADKILNDAIFKGFVPDEFTYCSLING 365 (759)
Q Consensus 288 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 365 (759)
.|..-...|-..|..-.+..+.......|+.-. ..||..-.+.|.+.+.++-+..+|..+++- ++.+...|...+..
T Consensus 481 qWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ 559 (913)
T KOG0495|consen 481 QWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMF 559 (913)
T ss_pred HHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHH
Confidence 888888888888999999999888887776543 358888899999999999999999998876 24466777777777
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 004362 366 LCQDGDVDRAMAVYVKALEKGLKPSIVLYNTLIKGLSQQGLILQALQLMNEMSESGCCPDMWTYNIVINGLCKMGCVSDA 445 (759)
Q Consensus 366 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 445 (759)
--..|..+.-..+++++...-++ ....|-.....+-..|+...|..++.+..+.... +...|...+.......+++.|
T Consensus 560 ek~hgt~Esl~Allqkav~~~pk-ae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~era 637 (913)
T KOG0495|consen 560 EKSHGTRESLEALLQKAVEQCPK-AEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERA 637 (913)
T ss_pred HHhcCcHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHH
Confidence 77789999999999999988665 6777878888888899999999999999987533 677888899999999999999
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004362 446 NNLVNDAISKGYIPDIFTFNTLIDGYCKQLKMEIAIEILNTMWSHGVTPDVITYNSLLNGLCKAAKSEDVMETFKTMIEK 525 (759)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 525 (759)
..+|.+.... .|+..+|..-+....-.++.++|.+++++.++. ++.-...|..+.+.+-+.++.+.|.+.|..-.+.
T Consensus 638 R~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~ 714 (913)
T KOG0495|consen 638 RDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK 714 (913)
T ss_pred HHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc
Confidence 9999998765 678888888777777889999999999999886 2333667888889999999999999999877665
Q ss_pred CCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhH
Q 004362 526 RCVPNIITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATY 605 (759)
Q Consensus 526 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 605 (759)
.+-.+..|..+...-.+.|++-.|..++++..-. -|.+...|...+.+-.+.|+.+.|..+..++.+. .|.+...|
T Consensus 715 -cP~~ipLWllLakleEk~~~~~rAR~ildrarlk-NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LW 790 (913)
T KOG0495|consen 715 -CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK-NPKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLW 790 (913)
T ss_pred -CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc-CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhH
Confidence 2334556777777778889999999999999876 3668889999999999999999999999999998 89999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHh
Q 004362 606 NIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSL-STIGRVINCLCV 684 (759)
Q Consensus 606 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~ 684 (759)
..-+....+.++-..++..+++. ..|+.....++..+....+++.|+..|.++++ ..|+. .+|..++.....
T Consensus 791 aEaI~le~~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk--~d~d~GD~wa~fykfel~ 863 (913)
T KOG0495|consen 791 AEAIWLEPRPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVK--KDPDNGDAWAWFYKFELR 863 (913)
T ss_pred HHHHHhccCcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc--cCCccchHHHHHHHHHHH
Confidence 99999998888877777766654 56778888888999999999999999999999 77875 445556666688
Q ss_pred cCcHHHHHHHHHHHHHCCCCCchHHHHHhc
Q 004362 685 DHRVHEAVGFVHLMVQKGIVPEVVNTIFEA 714 (759)
Q Consensus 685 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~ 714 (759)
.|.-++-.+++.+... ..|.....|...
T Consensus 864 hG~eed~kev~~~c~~--~EP~hG~~W~av 891 (913)
T KOG0495|consen 864 HGTEEDQKEVLKKCET--AEPTHGELWQAV 891 (913)
T ss_pred hCCHHHHHHHHHHHhc--cCCCCCcHHHHH
Confidence 9998988999988876 567644444433
No 24
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.91 E-value=1.4e-19 Score=193.73 Aligned_cols=383 Identities=10% Similarity=0.021 Sum_probs=282.0
Q ss_pred HHHhcCCHHHHHHHHHHHhhCC--CCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHHcCCh
Q 004362 260 GLCRKGAISEAISLLDSLGRED--LTPDVVTYNTLMCGLCKNSKVVEAEYYLHKMVNEGLEPDGFSYNAVIDGYCKAGMI 337 (759)
Q Consensus 260 ~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 337 (759)
.+.+..+++..--+|..-.+.. -..+......++..+.+.|++++|..+++........ +...+..++......|++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~ 92 (656)
T PRK15174 14 TLLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQP 92 (656)
T ss_pred hhhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCH
Confidence 3446667777666666544321 0122333445566777889999999998888877433 344555566667778999
Q ss_pred hHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 004362 338 SSADKILNDAIFKGFVPDEFTYCSLINGLCQDGDVDRAMAVYVKALEKGLKPSIVLYNTLIKGLSQQGLILQALQLMNEM 417 (759)
Q Consensus 338 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 417 (759)
+.|...++.+.... +.+...+..+...+...|++++|...++++....+. +...+..+...+...|++++|...++.+
T Consensus 93 ~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~-~~~a~~~la~~l~~~g~~~eA~~~~~~~ 170 (656)
T PRK15174 93 DAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSG-NSQIFALHLRTLVLMDKELQAISLARTQ 170 (656)
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 99999999888764 335667778888888899999999999988887544 6677888888888889999999888887
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 004362 418 SESGCCPDMWTYNIVINGLCKMGCVSDANNLVNDAISKGYIPDIFTFNTLIDGYCKQLKMEIAIEILNTMWSHGVTPDVI 497 (759)
Q Consensus 418 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 497 (759)
...... +...+..+ ..+...|++++|...++.+......++......+...+...|++++|...++++.... +.+..
T Consensus 171 ~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~ 247 (656)
T PRK15174 171 AQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAA 247 (656)
T ss_pred HHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHH
Confidence 765322 22233233 3477888999999888888776433444455556677888899999999999888764 33577
Q ss_pred HHHHHHHHHHhcCCHHH----HHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHH
Q 004362 498 TYNSLLNGLCKAAKSED----VMETFKTMIEKRCVPNIITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLI 573 (759)
Q Consensus 498 ~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 573 (759)
.+..+...+...|++++ |...|++..+.. +.+...+..++..+...|++++|...++++... .+.+...+..+.
T Consensus 248 ~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l-~P~~~~a~~~La 325 (656)
T PRK15174 248 LRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT-HPDLPYVRAMYA 325 (656)
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHH
Confidence 77788888888888875 788888888764 335667888888888899999999999988876 344566777788
Q ss_pred HHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCh
Q 004362 574 NGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGI 653 (759)
Q Consensus 574 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 653 (759)
.++...|++++|+..|+++... .|.+...+..++.++...|++++|+..|+++.+. .|+.. ...+
T Consensus 326 ~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~--~P~~~-----------~~~~ 390 (656)
T PRK15174 326 RALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA--RASHL-----------PQSF 390 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--Chhhc-----------hhhH
Confidence 8888899999999999888877 6666666666778888889999999999988865 45532 3555
Q ss_pred HHHHHHHHHHHh
Q 004362 654 NSGYCLLLENID 665 (759)
Q Consensus 654 ~~A~~~~~~~~~ 665 (759)
++|...+.++++
T Consensus 391 ~ea~~~~~~~~~ 402 (656)
T PRK15174 391 EEGLLALDGQIS 402 (656)
T ss_pred HHHHHHHHHHHH
Confidence 678888888776
No 25
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=3.7e-20 Score=189.89 Aligned_cols=297 Identities=14% Similarity=0.096 Sum_probs=214.6
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HhhHHHHHHHHHhcCCH
Q 004362 401 LSQQGLILQALQLMNEMSESGCCPDMWTYNIVINGLCKMGCVSDANNLVNDAISKGYIPD---IFTFNTLIDGYCKQLKM 477 (759)
Q Consensus 401 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~ 477 (759)
+...|++++|...|+++.+.+ +.+..++..+...+...|++++|..+++.+......++ ..++..++..|...|++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 344555566666666655542 12334555555555666666666666665554321111 23456667777777777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh----hcHHHHHHHHHhcCCHHHHHHH
Q 004362 478 EIAIEILNTMWSHGVTPDVITYNSLLNGLCKAAKSEDVMETFKTMIEKRCVPNI----ITYSILGESLCKAHKITEAFNL 553 (759)
Q Consensus 478 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~ 553 (759)
+.|..+|+++.+.. +++..++..++..+...|++++|++.++.+.+.+..+.. ..+..++..+...|++++|...
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 77777777777642 335667777777778888888888888877765432211 1345567777888899999999
Q ss_pred HHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCc-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004362 554 LEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHT-TATYNIMINAFSEKLNFYMAEKLFYEMSEKG 632 (759)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 632 (759)
++++.+.. +.+...+..++..|.+.|++++|.+.|+++... .|++ ..++..++.+|...|++++|...++++.+.
T Consensus 203 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~- 278 (389)
T PRK11788 203 LKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ--DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE- 278 (389)
T ss_pred HHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 88888752 445667778888899999999999999998876 4433 456788889999999999999999998865
Q ss_pred CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCcHHHHHHHHHHHHHCCCCCc
Q 004362 633 CPPDNYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSLSTIGRVINCLCV---DHRVHEAVGFVHLMVQKGIVPE 706 (759)
Q Consensus 633 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~ 706 (759)
.|+...+..++..+.+.|++++|..+++++++ ..|+...+..++..... .|+.++|+.++++|.++++.|+
T Consensus 279 -~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~--~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 352 (389)
T PRK11788 279 -YPGADLLLALAQLLEEQEGPEAAQALLREQLR--RHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRK 352 (389)
T ss_pred -CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCC
Confidence 57766678888999999999999999999998 78998888877777653 5689999999999998777766
No 26
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.89 E-value=2.6e-18 Score=188.35 Aligned_cols=421 Identities=10% Similarity=-0.031 Sum_probs=234.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHH
Q 004362 218 TFNKLIHTLCKKGNVRESEKLFNKVLKRGVSPNLFTFNMFIQGLCRKGAISEAISLLDSLGREDLTPDVVTYNTLMCGLC 297 (759)
Q Consensus 218 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 297 (759)
...-.+......|+.++|++++....... +.+...+..+...+...|++++|.+++++..... +.+...+..+...+.
T Consensus 17 ~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~ 94 (765)
T PRK10049 17 QIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLA 94 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 33444445555555555555555554321 2233345555555555555555555555544432 223334444444555
Q ss_pred hCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHH
Q 004362 298 KNSKVVEAEYYLHKMVNEGLEPDGFSYNAVIDGYCKAGMISSADKILNDAIFKGFVPDEFTYCSLINGLCQDGDVDRAMA 377 (759)
Q Consensus 298 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 377 (759)
..|++++|...++++.... +.+.. +..+..++...|+.++|...++++.+... .+...+..+...+...+..+.|+.
T Consensus 95 ~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~~e~Al~ 171 (765)
T PRK10049 95 DAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRLSAPALG 171 (765)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCChHHHHH
Confidence 5555555555555555441 11222 44444444555555555555555544421 122333334444444444444544
Q ss_pred HHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-----hcCCh---HHHHHHH
Q 004362 378 VYVKALEKGLKPSIVLYNTLIKGLSQQGLILQALQLMNEMSESGCCPDMWTYNIVINGLC-----KMGCV---SDANNLV 449 (759)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~---~~a~~~~ 449 (759)
.++.+.. .|+.. .. + . .......+.... ..+++ ++|+..+
T Consensus 172 ~l~~~~~---~p~~~--~~-l-------~-------------------~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~ 219 (765)
T PRK10049 172 AIDDANL---TPAEK--RD-L-------E-------------------ADAAAELVRLSFMPTRSEKERYAIADRALAQY 219 (765)
T ss_pred HHHhCCC---CHHHH--HH-H-------H-------------------HHHHHHHHHhhcccccChhHHHHHHHHHHHHH
Confidence 4433322 11100 00 0 0 000011111111 11122 5566666
Q ss_pred HHHHHC-CCCCCHh-hHH----HHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004362 450 NDAISK-GYIPDIF-TFN----TLIDGYCKQLKMEIAIEILNTMWSHGVT-PDVITYNSLLNGLCKAAKSEDVMETFKTM 522 (759)
Q Consensus 450 ~~~~~~-~~~~~~~-~~~----~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 522 (759)
+.+.+. ...|+.. .+. ..+..+...|++++|+..|+.+.+.+.+ |+. ....+..+|...|++++|+..|+++
T Consensus 220 ~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~ 298 (765)
T PRK10049 220 DALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTEL 298 (765)
T ss_pred HHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 666643 1122211 111 1122344667778888888877765422 221 1222456677778888888888777
Q ss_pred HHcCCCC---ChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------Ccc---HHHHHHHHHHHHccCChhhH
Q 004362 523 IEKRCVP---NIITYSILGESLCKAHKITEAFNLLEEMENKGL-----------TLD---TVAFGTLINGFCNSGDLDGA 585 (759)
Q Consensus 523 ~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~A 585 (759)
.+..... .......+..++...|++++|..+++.+..... .|+ ...+..++..+...|++++|
T Consensus 299 l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA 378 (765)
T PRK10049 299 FYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQA 378 (765)
T ss_pred hhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHH
Confidence 6542111 123345556667777888888888877776411 122 23455667788888999999
Q ss_pred HHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 004362 586 YQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPD-NYTYRIMIDSFCKTGGINSGYCLLLENI 664 (759)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 664 (759)
++.++++... .|.+...+..++.++...|++++|++.++++++. .|+ ...+..++..+...|++++|...+++++
T Consensus 379 ~~~l~~al~~--~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll 454 (765)
T PRK10049 379 EMRARELAYN--APGNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVV 454 (765)
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999998888 7888888999999999999999999999998865 465 6677777778888899999999999998
Q ss_pred hCCCCCCHHHHHHHHHHH
Q 004362 665 DKGFIPSLSTIGRVINCL 682 (759)
Q Consensus 665 ~~g~~p~~~~~~~l~~~~ 682 (759)
+ ..|++.....+-..+
T Consensus 455 ~--~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 455 A--REPQDPGVQRLARAR 470 (765)
T ss_pred H--hCCCCHHHHHHHHHH
Confidence 8 778877665554444
No 27
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=8.9e-20 Score=187.08 Aligned_cols=304 Identities=13% Similarity=0.147 Sum_probs=233.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHh
Q 004362 362 LINGLCQDGDVDRAMAVYVKALEKGLKPSIVLYNTLIKGLSQQGLILQALQLMNEMSESGCCPD---MWTYNIVINGLCK 438 (759)
Q Consensus 362 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~ 438 (759)
....+...|++++|...|.++.+.++. +..++..+...+...|++++|..+++.+...+..++ ...+..+...|..
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVDPE-TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 344556778888888888888877543 566777888888888888888888888776532221 2456777788888
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHH
Q 004362 439 MGCVSDANNLVNDAISKGYIPDIFTFNTLIDGYCKQLKMEIAIEILNTMWSHGVTPD----VITYNSLLNGLCKAAKSED 514 (759)
Q Consensus 439 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~ 514 (759)
.|++++|..+|+.+.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..++..+...|++++
T Consensus 120 ~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred CCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence 888888888888887653 44667788888888889999999999988887643322 1234566777888899999
Q ss_pred HHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHH
Q 004362 515 VMETFKTMIEKRCVPNIITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMED 594 (759)
Q Consensus 515 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 594 (759)
|...|+++.+.. +.+...+..++..+...|++++|..+++++...+......++..++.+|...|++++|...++++..
T Consensus 199 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 199 ARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999988764 3345677788889999999999999999998753322345678888999999999999999999988
Q ss_pred ccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh---cCChHHHHHHHHHHHhCCCCCC
Q 004362 595 QYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCK---TGGINSGYCLLLENIDKGFIPS 671 (759)
Q Consensus 595 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~g~~p~ 671 (759)
. .|+. ..+..++..+...|++++|..+++++.+. .|+..+++.++..+.. .|+.++++..++++++.++.|+
T Consensus 278 ~--~p~~-~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 352 (389)
T PRK11788 278 E--YPGA-DLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRK 352 (389)
T ss_pred h--CCCc-hHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCC
Confidence 7 4544 45588899999999999999999998865 6888888877776654 5689999999999987666554
Q ss_pred HH
Q 004362 672 LS 673 (759)
Q Consensus 672 ~~ 673 (759)
+.
T Consensus 353 p~ 354 (389)
T PRK11788 353 PR 354 (389)
T ss_pred CC
Confidence 43
No 28
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.88 E-value=4.6e-18 Score=186.45 Aligned_cols=441 Identities=12% Similarity=0.048 Sum_probs=296.3
Q ss_pred HHHHhhchhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 004362 166 LRLLKNMPSQGFEPNAVAYCTLIAGFYEENHNVEAYELFDEMLGMGISPDIATFNKLIHTLCKKGNVRESEKLFNKVLKR 245 (759)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 245 (759)
+..+++ ...+ +.+.....-.+.+....|+.++|++++.+..... +.+...+..+...+...|++++|..++++.++.
T Consensus 2 ~~~~~~-~~~~-~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~ 78 (765)
T PRK10049 2 LSWLRQ-ALKS-ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL 78 (765)
T ss_pred chhhhh-hhcc-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345555 3222 5566666667777888999999999999998632 345556888899999999999999999999887
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhcHH
Q 004362 246 GVSPNLFTFNMFIQGLCRKGAISEAISLLDSLGREDLTPDVVTYNTLMCGLCKNSKVVEAEYYLHKMVNEGLEPDGFSYN 325 (759)
Q Consensus 246 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 325 (759)
. +.+...+..++..+...|++++|+..++++.... +.+.. +..+..++...|+.++|+..++++.+.... +...+.
T Consensus 79 ~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~ 154 (765)
T PRK10049 79 E-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPT 154 (765)
T ss_pred C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHH
Confidence 3 3356677788899999999999999999998773 44555 888888999999999999999999987432 455566
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC
Q 004362 326 AVIDGYCKAGMISSADKILNDAIFKGFVPDEFTYCSLINGLCQDGDVDRAMAVYVKALEKGLKPSIVLYNTLIKGLSQQG 405 (759)
Q Consensus 326 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 405 (759)
.+...+...+..+.|.+.++.+.. .|+.. . -+ +...+.....- .+.......+
T Consensus 155 ~la~~l~~~~~~e~Al~~l~~~~~---~p~~~--~-~l-------~~~~~~~~~r~--------------~~~~~~~~~~ 207 (765)
T PRK10049 155 EYVQALRNNRLSAPALGAIDDANL---TPAEK--R-DL-------EADAAAELVRL--------------SFMPTRSEKE 207 (765)
T ss_pred HHHHHHHHCCChHHHHHHHHhCCC---CHHHH--H-HH-------HHHHHHHHHHh--------------hcccccChhH
Confidence 677788888999999998876653 22200 0 00 00000000000 0000001111
Q ss_pred CH---HHHHHHHHHHHhC-CCCCCHH-HH----HHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCHhhHHHHHHHHHhcC
Q 004362 406 LI---LQALQLMNEMSES-GCCPDMW-TY----NIVINGLCKMGCVSDANNLVNDAISKGYI-PDIFTFNTLIDGYCKQL 475 (759)
Q Consensus 406 ~~---~~a~~~~~~~~~~-~~~~~~~-~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~ 475 (759)
++ ++|+..++.+... ...|+.. .+ ...+..+...|++++|+..|+.+.+.+.+ |+. ....+...|...|
T Consensus 208 r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g 286 (765)
T PRK10049 208 RYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLH 286 (765)
T ss_pred HHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcC
Confidence 22 4555555555532 1112111 11 01122334556666777777666655321 111 1122355666677
Q ss_pred CHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----------CCCh---hcHHHHH
Q 004362 476 KMEIAIEILNTMWSHGVTP---DVITYNSLLNGLCKAAKSEDVMETFKTMIEKRC-----------VPNI---ITYSILG 538 (759)
Q Consensus 476 ~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~~---~~~~~l~ 538 (759)
++++|+..|+++.+..... .......+..++...|++++|..+++.+..... .|+. ..+..++
T Consensus 287 ~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a 366 (765)
T PRK10049 287 QPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLS 366 (765)
T ss_pred CcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHH
Confidence 7777777777665542111 123344455566677777777777777665421 1221 2455677
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCH
Q 004362 539 ESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNF 618 (759)
Q Consensus 539 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 618 (759)
..+...|++++|+..++++... .|.+...+..++.++...|++++|++.++++... .|++...+...+..+...|++
T Consensus 367 ~~l~~~g~~~eA~~~l~~al~~-~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~ 443 (765)
T PRK10049 367 QVAKYSNDLPQAEMRARELAYN-APGNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEW 443 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCH
Confidence 8888999999999999999886 5667888999999999999999999999999998 788999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 004362 619 YMAEKLFYEMSEKGCPPDNYTYRIMIDS 646 (759)
Q Consensus 619 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 646 (759)
++|..+++++++. .|+......+-..
T Consensus 444 ~~A~~~~~~ll~~--~Pd~~~~~~~~~~ 469 (765)
T PRK10049 444 RQMDVLTDDVVAR--EPQDPGVQRLARA 469 (765)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 9999999999976 5765444444433
No 29
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.87 E-value=9.7e-17 Score=171.84 Aligned_cols=454 Identities=10% Similarity=0.012 Sum_probs=261.5
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCh--hhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH
Q 004362 190 GFYEENHNVEAYELFDEMLGMGISPDI--ATFNKLIHTLCKKGNVRESEKLFNKVLKRGVSPNLFTFNMFIQGLCRKGAI 267 (759)
Q Consensus 190 ~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 267 (759)
...+.|++..|++.|++..+. .|+. ..+ .++..+...|+.++|+..+++.... ..........+...+...|++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKA--GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhh--CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCH
Confidence 344555555666655555544 2221 122 4445555555555555555555411 111222222234455555555
Q ss_pred HHHHHHHHHHhhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHHcCChhHHHHHHHHH
Q 004362 268 SEAISLLDSLGREDLTPDVVTYNTLMCGLCKNSKVVEAEYYLHKMVNEGLEPDGFSYNAVIDGYCKAGMISSADKILNDA 347 (759)
Q Consensus 268 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 347 (759)
++|+++++++.+.. +.+...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++.++++
T Consensus 119 d~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekl 195 (822)
T PRK14574 119 DQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEA 195 (822)
T ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 55555555555443 223344444445555555555555555555443 223333322222222233333355555555
Q ss_pred HhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 004362 348 IFKGFVPDEFTYCSLINGLCQDGDVDRAMAVYVKALEKGLKPSIVLYNTLIKGLSQQGLILQALQLMNEMSESGCCPDMW 427 (759)
Q Consensus 348 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 427 (759)
.... +.+...+..+...+.+.|-...|.++..+-... . +...+..| . .+.+.+..+- +..++..
T Consensus 196 l~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~--f-~~~~~~~l-~-------~~~~a~~vr~----a~~~~~~ 259 (822)
T PRK14574 196 VRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL--V-SAEHYRQL-E-------RDAAAEQVRM----AVLPTRS 259 (822)
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc--c-CHHHHHHH-H-------HHHHHHHHhh----ccccccc
Confidence 5442 223344444445555555554444443321110 0 11110000 0 0111111100 0000000
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCC-HhhH----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004362 428 TYNIVINGLCKMGCVSDANNLVNDAISK-GYIPD-IFTF----NTLIDGYCKQLKMEIAIEILNTMWSHGVTPDVITYNS 501 (759)
Q Consensus 428 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~-~~~~----~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 501 (759)
- -.+.--.+.|+.-++.+... +..|. ...| .-.+-++...+++.++++.|+.+...+.+....+-..
T Consensus 260 ~-------~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a 332 (822)
T PRK14574 260 E-------TERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRW 332 (822)
T ss_pred c-------hhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHH
Confidence 0 00001234455555555542 11122 1222 2334466788899999999999998776545557788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCC-----CCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-------------C
Q 004362 502 LLNGLCKAAKSEDVMETFKTMIEKRC-----VPNIITYSILGESLCKAHKITEAFNLLEEMENKGL-------------T 563 (759)
Q Consensus 502 l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------------~ 563 (759)
+..+|...+++++|..+|+.+..... .++......|.-++...+++++|..+++.+.+... .
T Consensus 333 ~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn 412 (822)
T PRK14574 333 AASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPN 412 (822)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCC
Confidence 88999999999999999999876531 22333356788888999999999999999987311 1
Q ss_pred ccH-HHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HhhHH
Q 004362 564 LDT-VAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPD-NYTYR 641 (759)
Q Consensus 564 ~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~ 641 (759)
||- .....++..+.-.|++.+|.+.++.+... .|.+..+...++.++...|++.+|.+.++.+.. +.|+ ..+..
T Consensus 413 ~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~--aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~~~~~ 488 (822)
T PRK14574 413 DDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST--APANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSLILER 488 (822)
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccHHHHH
Confidence 121 23445567788899999999999999888 899999999999999999999999999988774 4666 67778
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004362 642 IMIDSFCKTGGINSGYCLLLENIDKGFIPSLSTIGRVI 679 (759)
Q Consensus 642 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 679 (759)
..+.++...|++.+|..+....++ ..|++.....+-
T Consensus 489 ~~~~~al~l~e~~~A~~~~~~l~~--~~Pe~~~~~~l~ 524 (822)
T PRK14574 489 AQAETAMALQEWHQMELLTDDVIS--RSPEDIPSQELD 524 (822)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHh--hCCCchhHHHHH
Confidence 888899999999999999999999 788877655544
No 30
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.86 E-value=4.5e-16 Score=166.80 Aligned_cols=437 Identities=13% Similarity=0.072 Sum_probs=268.1
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHH
Q 004362 44 KYMIDKLGFHGNFEEMENLLLEMRMDVDDSLLEGVHIGVMRNYGRRGKVQEAVDVFERMDFYNCEPTVLSYNTIMNILVE 123 (759)
Q Consensus 44 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (759)
..-+-+..+.|++++|+..|+++.+.+|. +......++..+...|+.++|+..+++..... +........+...+..
T Consensus 38 y~~aii~~r~Gd~~~Al~~L~qaL~~~P~--~~~av~dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~ 114 (822)
T PRK14574 38 YDSLIIRARAGDTAPVLDYLQEESKAGPL--QSGQVDDWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRN 114 (822)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhCcc--chhhHHHHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHH
Confidence 33444567999999999999999999887 54333388888889999999999999988211 2233334444668888
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHhhchhCCCCCCHHhHHHHHHHHHhcCChhHHHHH
Q 004362 124 YGYFSQVHKVYMRMRNKGIVPDVYTFVIRIKSFCRTRRPHVALRLLKNMPSQGFEPNAVAYCTLIAGFYEENHNVEAYEL 203 (759)
Q Consensus 124 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 203 (759)
.|++++|+++|+++.+.. +.++..+..++..+...++.++|++.++.+.... |+...+..++..+...++..+|++.
T Consensus 115 ~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~~ 191 (822)
T PRK14574 115 EKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQA 191 (822)
T ss_pred cCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHHH
Confidence 899999999999999875 3356777788888999999999999999998875 5555565554455456666679999
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHH--HHHHHHHHhcC------------CHHH
Q 004362 204 FDEMLGMGISPDIATFNKLIHTLCKKGNVRESEKLFNKVLKRGVSPNLFTF--NMFIQGLCRKG------------AISE 269 (759)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g------------~~~~ 269 (759)
++++.+.. +-+...+..+..++.+.|-...|.++...-... +.+....+ ...+.-.++.+ -.+.
T Consensus 192 ~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ 269 (822)
T PRK14574 192 SSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADK 269 (822)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHH
Confidence 99999874 225666777888888999988888777653221 11111111 00001111111 1233
Q ss_pred HHHHHHHHhhC-CCCCC-cchH----HHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHHcCChhHHHHH
Q 004362 270 AISLLDSLGRE-DLTPD-VVTY----NTLMCGLCKNSKVVEAEYYLHKMVNEGLEPDGFSYNAVIDGYCKAGMISSADKI 343 (759)
Q Consensus 270 a~~~~~~~~~~-~~~~~-~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 343 (759)
|+.-++.+... +..|. ...| .-.+-++...+++.++++.|+.+...+.+....+-..+.++|...+++++|..+
T Consensus 270 ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l 349 (822)
T PRK14574 270 ALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPI 349 (822)
T ss_pred HHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHH
Confidence 44444444431 11121 1111 122344556677777777777777666554445666667777777777777777
Q ss_pred HHHHHhCCC-----CCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----------CCCH---HhHHHHHHHHHhc
Q 004362 344 LNDAIFKGF-----VPDEFTYCSLINGLCQDGDVDRAMAVYVKALEKGL-----------KPSI---VLYNTLIKGLSQQ 404 (759)
Q Consensus 344 ~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----------~~~~---~~~~~l~~~~~~~ 404 (759)
++.+..... +++......|..++...+++++|..+++.+.+..+ .|++ .....++..+.-.
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~ 429 (822)
T PRK14574 350 LSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVAL 429 (822)
T ss_pred HHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHc
Confidence 777655321 11222235566667777777777777777665311 1111 1222334445555
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 004362 405 GLILQALQLMNEMSESGCCPDMWTYNIVINGLCKMGCVSDANNLVNDAISKGYIPDIFTFNTLIDGYCKQLKMEIAIEIL 484 (759)
Q Consensus 405 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 484 (759)
|++.+|.+.++.+.... +-|......+...+...|.+.+|+..++...... +.+..+....+..+...+++.+|..+.
T Consensus 430 gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~A~~~~ 507 (822)
T PRK14574 430 NDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQMELLT 507 (822)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 66666666666665542 3355555555666666666666666665544442 334444455555555566666666666
Q ss_pred HHHHHC
Q 004362 485 NTMWSH 490 (759)
Q Consensus 485 ~~~~~~ 490 (759)
+.+...
T Consensus 508 ~~l~~~ 513 (822)
T PRK14574 508 DDVISR 513 (822)
T ss_pred HHHHhh
Confidence 655554
No 31
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.83 E-value=6.9e-17 Score=150.01 Aligned_cols=482 Identities=13% Similarity=0.105 Sum_probs=317.2
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHH-HHHHHHHhcCChhHHHHHHHHHhhCCCCCCH----HH
Q 004362 179 PNAVAYCTLIAGFYEENHNVEAYELFDEMLGMGISPDIATFN-KLIHTLCKKGNVRESEKLFNKVLKRGVSPNL----FT 253 (759)
Q Consensus 179 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~ 253 (759)
....+...|...|.......+|+..|+-+.+....|+...+. .+...+.+..++.+|.++++..+..-...+. .+
T Consensus 199 ltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~riki 278 (840)
T KOG2003|consen 199 LTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKI 278 (840)
T ss_pred chHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHH
Confidence 344455566777877888899999999998888778765543 3446677888999999999988876322222 33
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhcH--------H
Q 004362 254 FNMFIQGLCRKGAISEAISLLDSLGREDLTPDVVTYNTLMCGLCKNSKVVEAEYYLHKMVNEGLEPDGFSY--------N 325 (759)
Q Consensus 254 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--------~ 325 (759)
.+.+.-.+.+.|+++.|+..|+.+... .|+..+-..|+-++..-|+.++..+.|.+|......||..-| .
T Consensus 279 l~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~ 356 (840)
T KOG2003|consen 279 LNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDD 356 (840)
T ss_pred HhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcch
Confidence 444445678899999999999998766 677777666666777789999999999999865323322211 1
Q ss_pred HHHHHHHHcCCh--------hHHHHHHH---HHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhH
Q 004362 326 AVIDGYCKAGMI--------SSADKILN---DAIFKGFVPDEFTYCSLINGLCQDGDVDRAMAVYVKALEKGLKPSIVLY 394 (759)
Q Consensus 326 ~ll~~~~~~~~~--------~~a~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 394 (759)
.++.-..+...+ ..|++.+- +++..-+.|+-. . | .+-..+.++......+..+..
T Consensus 357 ~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa------~-----g-~dwcle~lk~s~~~~la~dle-- 422 (840)
T KOG2003|consen 357 NLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFA------A-----G-CDWCLESLKASQHAELAIDLE-- 422 (840)
T ss_pred HHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchh------c-----c-cHHHHHHHHHhhhhhhhhhhh--
Confidence 222222221111 11111111 111111111100 0 0 111112211111110000100
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 004362 395 NTLIKGLSQQGLILQALQLMNEMSESGCCPDMWTYNIVINGLCK--MGCVSDANNLVNDAISKGYIPDIFTFNTLIDGYC 472 (759)
Q Consensus 395 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 472 (759)
-.-...+.+.|+++.|+++++-+.+...+.-...-+.+-..+.. -.++..|.++-+..+... ..++...+.-.....
T Consensus 423 i~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f 501 (840)
T KOG2003|consen 423 INKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAF 501 (840)
T ss_pred hhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceee
Confidence 01123477899999999999888776433222222323222222 345667777766655432 223333333334445
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHH
Q 004362 473 KQLKMEIAIEILNTMWSHGVTPDVITYNSLLNGLCKAAKSEDVMETFKTMIEKRCVPNIITYSILGESLCKAHKITEAFN 552 (759)
Q Consensus 473 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 552 (759)
..|++++|.+.|++.+.....-....|| +...+-..|+.++|+++|-++... +..+...+..+...|....+...|++
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie 579 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIE 579 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHH
Confidence 6899999999999998763222222233 333467889999999999887654 23477888889999999999999999
Q ss_pred HHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004362 553 LLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKG 632 (759)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 632 (759)
++.+.... +|.|+.++..+...|-+.|+-..|.+.+-.-..- .|.+..+...++.-|....-+++|+.+|+++. -
T Consensus 580 ~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry--fp~nie~iewl~ayyidtqf~ekai~y~ekaa--l 654 (840)
T KOG2003|consen 580 LLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY--FPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--L 654 (840)
T ss_pred HHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc--cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--h
Confidence 99998877 7889999999999999999999999988766655 78899999999999999999999999999987 4
Q ss_pred CCCCHhhHHHHHHHH-HhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcC
Q 004362 633 CPPDNYTYRIMIDSF-CKTGGINSGYCLLLENIDKGFIPSLS-TIGRVINCLCVDH 686 (759)
Q Consensus 633 ~~p~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g 686 (759)
+.|+..-|..++..| .++|+|++|..+|+...+ -.|.+. .+..++..+...|
T Consensus 655 iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr--kfpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 655 IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR--KFPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCccchHHHHHHHHHhcccc
Confidence 689999998888644 678999999999999887 445444 4444444433444
No 32
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=1.3e-14 Score=136.00 Aligned_cols=473 Identities=12% Similarity=0.051 Sum_probs=307.8
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 004362 180 NAVAYCTLIAGFYEENHNVEAYELFDEMLGMGISPDIATFNKLIHTLCKKGNVRESEKLFNKVLKRGVSPNLFTFNMFIQ 259 (759)
Q Consensus 180 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 259 (759)
+...|......-...+++..|..+|++.+... ..+...|...+..-.+++.+..|..++++.+..-+..| ..|.-.+.
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~y 149 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHH
Confidence 34445554444455666667777777766543 22445555556666666777777777777665422212 23444444
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHHcCChhH
Q 004362 260 GLCRKGAISEAISLLDSLGREDLTPDVVTYNTLMCGLCKNSKVVEAEYYLHKMVNEGLEPDGFSYNAVIDGYCKAGMISS 339 (759)
Q Consensus 260 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 339 (759)
+--..|++..|.++|+....- .|+...|++.+..-.+-+.++.|..+|++.+-. .|+..+|......-.+.|....
T Consensus 150 mEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~ 225 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVAL 225 (677)
T ss_pred HHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHH
Confidence 444567777777777776544 677777777777777777777777777776653 4667777666666667777777
Q ss_pred HHHHHHHHHhC-C-CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHhHHHHHHHHHhcCCH---HHHHH-
Q 004362 340 ADKILNDAIFK-G-FVPDEFTYCSLINGLCQDGDVDRAMAVYVKALEKGLKPS-IVLYNTLIKGLSQQGLI---LQALQ- 412 (759)
Q Consensus 340 a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~---~~a~~- 412 (759)
+..+|+.++.. | -..+...+.+....-.++..++.|.-+|+-.+..-++.. ...|..+...--+-|+. ++++-
T Consensus 226 aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~ 305 (677)
T KOG1915|consen 226 ARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVG 305 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhh
Confidence 77777776653 1 011223444444445556777888888877776533321 22333333322233443 33321
Q ss_pred ----HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHh-hHHHHHH--------HHHhcCCHHH
Q 004362 413 ----LMNEMSESGCCPDMWTYNIVINGLCKMGCVSDANNLVNDAISKGYIPDIF-TFNTLID--------GYCKQLKMEI 479 (759)
Q Consensus 413 ----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~--------~~~~~~~~~~ 479 (759)
-++.++..+ +.|-.+|...++.-...|+.+...++|+.++..-.+.... .|...|- .-....+.+.
T Consensus 306 KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~er 384 (677)
T KOG1915|consen 306 KRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVER 384 (677)
T ss_pred hhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 234444443 3466677888888888889999999998888763222221 1221111 1125678889
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHH----HHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHH
Q 004362 480 AIEILNTMWSHGVTPDVITYNSLLNG----LCKAAKSEDVMETFKTMIEKRCVPNIITYSILGESLCKAHKITEAFNLLE 555 (759)
Q Consensus 480 A~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 555 (759)
+.++|+..++. ++...+|+.-+-.. -.++.+...|.+++...+ |..|-..+|...+..-.+.++++.+..+++
T Consensus 385 tr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYE 461 (677)
T KOG1915|consen 385 TRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYE 461 (677)
T ss_pred HHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999988884 45555565544433 346778888888888776 457788888888888888999999999999
Q ss_pred HHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 004362 556 EMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPP 635 (759)
Q Consensus 556 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 635 (759)
..+.-+ |.+..+|...+..-...|+.+.|..+|..+............|...+..-...|.++.|..+|+++++. .+
T Consensus 462 kfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~ 538 (677)
T KOG1915|consen 462 KFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQ 538 (677)
T ss_pred HHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cc
Confidence 998863 557788888888888899999999999998877544444566777777778889999999999999876 56
Q ss_pred CHhhHHHHHHHHH-----hcC-----------ChHHHHHHHHHHHh
Q 004362 636 DNYTYRIMIDSFC-----KTG-----------GINSGYCLLLENID 665 (759)
Q Consensus 636 ~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~~ 665 (759)
...+|.+.+.--. ..| +...|..+|+++..
T Consensus 539 h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 539 HVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred cchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 6667777665332 334 56778888888765
No 33
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.79 E-value=1.4e-15 Score=141.41 Aligned_cols=439 Identities=13% Similarity=0.071 Sum_probs=269.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchH-HHHHHHHHhCCChHHHHHHHHHHHHCCCCCChh----cHHHHHHH
Q 004362 256 MFIQGLCRKGAISEAISLLDSLGREDLTPDVVTY-NTLMCGLCKNSKVVEAEYYLHKMVNEGLEPDGF----SYNAVIDG 330 (759)
Q Consensus 256 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~ll~~ 330 (759)
.|.+-|.......+|+..++-+.+...-|+.-.. ..+...+.+...+.+|+++|+..+..-...+.. ..+.+.-.
T Consensus 206 nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvt 285 (840)
T KOG2003|consen 206 NLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVT 285 (840)
T ss_pred HHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCee
Confidence 3444455555555566655555544433433222 123344555556666666666555441111111 22223334
Q ss_pred HHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC------------CCHHhHHHHH
Q 004362 331 YCKAGMISSADKILNDAIFKGFVPDEFTYCSLINGLCQDGDVDRAMAVYVKALEKGLK------------PSIVLYNTLI 398 (759)
Q Consensus 331 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------------~~~~~~~~l~ 398 (759)
+.+.|+++.|+..|+..... .|+..+-..|+-++...|+-++..+.|.+++..... |+....+.-+
T Consensus 286 fiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai 363 (840)
T KOG2003|consen 286 FIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAI 363 (840)
T ss_pred EEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHH
Confidence 45556666666666665544 344444444444555556666666666666543211 1111121111
Q ss_pred H-----HHHhcC--CHHHHHHHHHHHHhCCCCCCHH-----H----------------HHHHHHHHHhcCChHHHHHHHH
Q 004362 399 K-----GLSQQG--LILQALQLMNEMSESGCCPDMW-----T----------------YNIVINGLCKMGCVSDANNLVN 450 (759)
Q Consensus 399 ~-----~~~~~~--~~~~a~~~~~~~~~~~~~~~~~-----~----------------~~~l~~~~~~~~~~~~a~~~~~ 450 (759)
. -.-+.. +-++++-.--+++.--+.|+-. . -..-...+.+.|+++.|.++++
T Consensus 364 ~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilk 443 (840)
T KOG2003|consen 364 KNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILK 443 (840)
T ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHH
Confidence 1 111110 1111111111111111111100 0 0011224678999999999998
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 004362 451 DAISKGYIPDIFTFNTLIDGYCK--QLKMEIAIEILNTMWSHGVTPDVITYNSLLNGLCKAAKSEDVMETFKTMIEKRCV 528 (759)
Q Consensus 451 ~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 528 (759)
-+.+.....-...-+.|-..+.- -.++..|.+.-+..+... .-+......-.......|++++|.+.|++.+..+..
T Consensus 444 v~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndas 522 (840)
T KOG2003|consen 444 VFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDAS 522 (840)
T ss_pred HHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchH
Confidence 88776433333333333333332 346777777776666432 113333322233334579999999999999876422
Q ss_pred CChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHH
Q 004362 529 PNIITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIM 608 (759)
Q Consensus 529 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 608 (759)
....+..++-.+...|+.++|+++|-.+... ...+..++..+...|....+...|++++-++... .|.++.+...+
T Consensus 523 -c~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl--ip~dp~ilskl 598 (840)
T KOG2003|consen 523 -CTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL--IPNDPAILSKL 598 (840)
T ss_pred -HHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc--CCCCHHHHHHH
Confidence 2334445566678899999999999887654 3457788889999999999999999999999888 99999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCc
Q 004362 609 INAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSLSTIGRVINCL-CVDHR 687 (759)
Q Consensus 609 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~-~~~g~ 687 (759)
+..|-+.|+-..|.+.+-.--. -++-+..+...|+.-|....-+++|+.+|+++.- +.|+...|..++..| .+.|+
T Consensus 599 ~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgn 675 (840)
T KOG2003|consen 599 ADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGN 675 (840)
T ss_pred HHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhccc
Confidence 9999999999999887655443 3566788888888888899999999999999988 889999998777666 68899
Q ss_pred HHHHHHHHHHHHHCCCCCc
Q 004362 688 VHEAVGFVHLMVQKGIVPE 706 (759)
Q Consensus 688 ~~~A~~~~~~~~~~~~~p~ 706 (759)
+.+|+++|+.+.++ .|+
T Consensus 676 yqka~d~yk~~hrk--fpe 692 (840)
T KOG2003|consen 676 YQKAFDLYKDIHRK--FPE 692 (840)
T ss_pred HHHHHHHHHHHHHh--Ccc
Confidence 99999999999873 454
No 34
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.79 E-value=3.4e-13 Score=126.64 Aligned_cols=461 Identities=12% Similarity=0.061 Sum_probs=338.1
Q ss_pred HHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 004362 61 NLLLEMRMDVDDSLLEGVHIGVMRNYGRRGKVQEAVDVFERMDFYNCEPTVLSYNTIMNILVEYGYFSQVHKVYMRMRNK 140 (759)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 140 (759)
+.|+..+..+.- +...|..-+.--..++++..|..+|+++.... ..+...|.-.+..-.++++...|..+|++.+..
T Consensus 60 kefEd~irrnR~--~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~ 136 (677)
T KOG1915|consen 60 KEFEDQIRRNRL--NMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI 136 (677)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh
Confidence 345555554433 55677777888888999999999999998654 566777888888888999999999999999875
Q ss_pred CCCCC-HHHHHHHHHHHHccCChhhHHHHHhhchhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhH
Q 004362 141 GIVPD-VYTFVIRIKSFCRTRRPHVALRLLKNMPSQGFEPNAVAYCTLIAGFYEENHNVEAYELFDEMLGMGISPDIATF 219 (759)
Q Consensus 141 ~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 219 (759)
- |- ...|...+..--..|+...|+++|+...+- .|+..+|++.|..-.+-+..+.|..+|++..-. .|++.+|
T Consensus 137 l--PRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~w 210 (677)
T KOG1915|consen 137 L--PRVDQLWYKYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNW 210 (677)
T ss_pred c--chHHHHHHHHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHH
Confidence 2 43 234555555566779999999999988764 699999999999999999999999999998764 6899999
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC--cchHHHHHHH
Q 004362 220 NKLIHTLCKKGNVRESEKLFNKVLKR-GV-SPNLFTFNMFIQGLCRKGAISEAISLLDSLGREDLTPD--VVTYNTLMCG 295 (759)
Q Consensus 220 ~~l~~~~~~~g~~~~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~ 295 (759)
......-.+.|+...+..+++.+++. |- ..+...+.+....-.++..++.|.-+|.-....- +.+ ...|......
T Consensus 211 ikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~f 289 (677)
T KOG1915|consen 211 IKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAF 289 (677)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHH
Confidence 98888888999999999999988765 11 1122345555555566788899999988877542 222 3445555555
Q ss_pred HHhCCChHHHHHH--------HHHHHHCCCCCChhcHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCc--ccHHHHHHH
Q 004362 296 LCKNSKVVEAEYY--------LHKMVNEGLEPDGFSYNAVIDGYCKAGMISSADKILNDAIFKGFVPDE--FTYCSLING 365 (759)
Q Consensus 296 ~~~~~~~~~a~~~--------~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~ 365 (759)
--+.|+.....+. |+.++..+ +.|-.+|-..++.-...|+.+...++|++++..- +|-. ..|...|-.
T Consensus 290 EKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYL 367 (677)
T KOG1915|consen 290 EKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYL 367 (677)
T ss_pred HHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHH
Confidence 4455665444332 34455443 4466778888888888899999999999998763 3321 122222211
Q ss_pred --------HHhcCCHHHHHHHHHHHHHcCCCCCHHhHHH----HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004362 366 --------LCQDGDVDRAMAVYVKALEKGLKPSIVLYNT----LIKGLSQQGLILQALQLMNEMSESGCCPDMWTYNIVI 433 (759)
Q Consensus 366 --------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 433 (759)
-....+.+.+.++|+..++. ++....++.- ...--.++.++..|.+++...+ |..|...++...|
T Consensus 368 WinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YI 444 (677)
T KOG1915|consen 368 WINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYI 444 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHH
Confidence 13467899999999998874 2223344433 3333456788899999988776 4578888999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCH
Q 004362 434 NGLCKMGCVSDANNLVNDAISKGYIPDIFTFNTLIDGYCKQLKMEIAIEILNTMWSHG-VTPDVITYNSLLNGLCKAAKS 512 (759)
Q Consensus 434 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~ 512 (759)
..-.+.++++.+..+++..+.-+ +.+..+|......-...|+.+.|..+|.-+++.. .......|.+.|..-...|.+
T Consensus 445 elElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ 523 (677)
T KOG1915|consen 445 ELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEF 523 (677)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchH
Confidence 99899999999999999999876 4577888888888888999999999999888752 122345677777777888999
Q ss_pred HHHHHHHHHHHHcCCCCChhcHHHHHH
Q 004362 513 EDVMETFKTMIEKRCVPNIITYSILGE 539 (759)
Q Consensus 513 ~~a~~~~~~~~~~~~~~~~~~~~~l~~ 539 (759)
+.|..+|+++++.. +...+|..++.
T Consensus 524 ekaR~LYerlL~rt--~h~kvWisFA~ 548 (677)
T KOG1915|consen 524 EKARALYERLLDRT--QHVKVWISFAK 548 (677)
T ss_pred HHHHHHHHHHHHhc--ccchHHHhHHH
Confidence 99999999998863 34445555543
No 35
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.77 E-value=8.5e-14 Score=128.91 Aligned_cols=239 Identities=18% Similarity=0.235 Sum_probs=110.5
Q ss_pred CCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHH
Q 004362 283 TPDVVTYNTLMCGLCKNSKVVEAEYYLHKMVNEGLEPDGFSYNAVIDGYCKAGMISSADKILNDAIFKGFVPDEFTYCSL 362 (759)
Q Consensus 283 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 362 (759)
+.+..++..||.++++-...+.|.+++++......+.+..+||.+|.+-.-.. ..+++.+|....+.||..++|++
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHH
Confidence 34445555555555555555555555555554444445555555544322211 14444555555555555555555
Q ss_pred HHHHHhcCCHHHH----HHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHH-HHHHHHHHHhC----CCC----CCHHHH
Q 004362 363 INGLCQDGDVDRA----MAVYVKALEKGLKPSIVLYNTLIKGLSQQGLILQ-ALQLMNEMSES----GCC----PDMWTY 429 (759)
Q Consensus 363 ~~~~~~~~~~~~A----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~----~~~----~~~~~~ 429 (759)
+.+..+.|+++.| .+++.+|.+.|+.|+..+|..+|..+.+.++..+ +..++.++... .++ -+...+
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 5555555544332 3344444555555555555555555554444322 33333333221 111 123344
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCC----CCCC---HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004362 430 NIVINGLCKMGCVSDANNLVNDAISKG----YIPD---IFTFNTLIDGYCKQLKMEIAIEILNTMWSHGVTPDVITYNSL 502 (759)
Q Consensus 430 ~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 502 (759)
...+..|.+..+.+.|.++..-+.... +.|+ ..-|..+..+.++....+.-...|+.|.-.-.-|+..+...+
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~ 439 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHL 439 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHH
Confidence 444555555555555555444333210 1111 112333444445555555555555555544444455555555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc
Q 004362 503 LNGLCKAAKSEDVMETFKTMIEK 525 (759)
Q Consensus 503 ~~~~~~~~~~~~a~~~~~~~~~~ 525 (759)
+++..-.+.++-.-++|..+...
T Consensus 440 lrA~~v~~~~e~ipRiw~D~~~~ 462 (625)
T KOG4422|consen 440 LRALDVANRLEVIPRIWKDSKEY 462 (625)
T ss_pred HHHHhhcCcchhHHHHHHHHHHh
Confidence 55555555555555555554443
No 36
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.77 E-value=1e-13 Score=128.38 Aligned_cols=455 Identities=16% Similarity=0.202 Sum_probs=291.2
Q ss_pred HHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHH--HcCChhHH-HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh
Q 004362 86 YGRRGKVQEAVDVFERMDFYNCEPTVLSYNTIMNILV--EYGYFSQV-HKVYMRMRNKGIVPDVYTFVIRIKSFCRTRRP 162 (759)
Q Consensus 86 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 162 (759)
...+|...++.-+|++|...|.+-+...-..+++.-+ .+.+..-+ ++.|-.|...| +.+..+| +.|..
T Consensus 125 mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--------K~G~v 195 (625)
T KOG4422|consen 125 MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--------KSGAV 195 (625)
T ss_pred HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc--------ccccH
Confidence 3567777888888888887776666666555555433 33333322 34444444433 2222232 33433
Q ss_pred hhHHHHHhhchhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 004362 163 HVALRLLKNMPSQGFEPNAVAYCTLIAGFYEENHNVEAYELFDEMLGMGISPDIATFNKLIHTLCKKGNVRESEKLFNKV 242 (759)
Q Consensus 163 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 242 (759)
|.-+|+..+ ....++..+|.++++--..++|.++|++......+.+..+||.+|.+-+-.. ..+++.+|
T Consensus 196 --AdL~~E~~P-----KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EM 264 (625)
T KOG4422|consen 196 --ADLLFETLP-----KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEM 264 (625)
T ss_pred --HHHHHhhcC-----CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHH
Confidence 334444433 3567899999999999999999999999988777889999999987655332 27899999
Q ss_pred hhCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHhhCCCCCCcchHHHHHHHHHhCCChHH-HHHHHHHHHHC--
Q 004362 243 LKRGVSPNLFTFNMFIQGLCRKGAISE----AISLLDSLGREDLTPDVVTYNTLMCGLCKNSKVVE-AEYYLHKMVNE-- 315 (759)
Q Consensus 243 ~~~~~~~~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~-- 315 (759)
....+.||..|+|+++++..+.|+++. |.+++.+|++.|+.|...+|..+|..+.+.++..+ +..++.++...
T Consensus 265 isqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~lt 344 (625)
T KOG4422|consen 265 ISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLT 344 (625)
T ss_pred HHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhc
Confidence 999999999999999999999998765 45778888999999999999999999988887755 45555555432
Q ss_pred --CCCC----ChhcHHHHHHHHHHcCChhHHHHHHHHHHhCC----CCCC---cccHHHHHHHHHhcCCHHHHHHHHHHH
Q 004362 316 --GLEP----DGFSYNAVIDGYCKAGMISSADKILNDAIFKG----FVPD---EFTYCSLINGLCQDGDVDRAMAVYVKA 382 (759)
Q Consensus 316 --~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~ 382 (759)
.++| |...|...+..|.+..+.+.|.++..-..... +.|+ .+-|..+....++....+.....|+.+
T Consensus 345 GK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~l 424 (625)
T KOG4422|consen 345 GKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDL 424 (625)
T ss_pred cCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2222 34456778888889999999988877665431 1222 234567778888888899999999999
Q ss_pred HHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHh
Q 004362 383 LEKGLKPSIVLYNTLIKGLSQQGLILQALQLMNEMSESGCCPDMWTYNIVINGLCKMGCVSDANNLVNDAISKGYIPDIF 462 (759)
Q Consensus 383 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 462 (759)
...-.-|+..+...++++....+.++-.-+++.++...|...+.....-++..+++ ....|+..
T Consensus 425 VP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~----------------~k~hp~tp 488 (625)
T KOG4422|consen 425 VPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLAR----------------DKLHPLTP 488 (625)
T ss_pred ccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhc----------------CCCCCCCh
Confidence 88777788888888999888888888888888888877654444433333333332 22222222
Q ss_pred hHHHHHHHHHhc-CCHHHH-HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCChhcHH---H
Q 004362 463 TFNTLIDGYCKQ-LKMEIA-IEILNTMWSHGVTPDVITYNSLLNGLCKAAKSEDVMETFKTMIEKR-CVPNIITYS---I 536 (759)
Q Consensus 463 ~~~~l~~~~~~~-~~~~~A-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~---~ 536 (759)
.-..+-....+. -++.++ ...-.++.+... .....+.++..+.+.|..++|.+++..+.+.+ -.|.....+ -
T Consensus 489 ~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~E 566 (625)
T KOG4422|consen 489 EREQLQVAFAKCAADIKEAYESQPIRQRAQDW--PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAE 566 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHhccC--ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHH
Confidence 111111111111 111111 222233444333 33344555555667777777777777775442 223333333 4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHc
Q 004362 537 LGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCN 578 (759)
Q Consensus 537 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 578 (759)
++..-...++...|..+++-+...+.+.-...-+.+...|.-
T Consensus 567 l~d~a~~~~spsqA~~~lQ~a~~~n~~~~E~La~RI~e~f~i 608 (625)
T KOG4422|consen 567 LMDSAKVSNSPSQAIEVLQLASAFNLPICEGLAQRIMEDFAI 608 (625)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCchhhhHHHHHHHHhcCc
Confidence 444455666777777777777655433222233444444433
No 37
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.76 E-value=1.9e-11 Score=119.51 Aligned_cols=313 Identities=13% Similarity=0.046 Sum_probs=198.1
Q ss_pred cCCHHHHHHHHHHHHhCCCCCC------HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HhhHHHHHHHHHhc
Q 004362 404 QGLILQALQLMNEMSESGCCPD------MWTYNIVINGLCKMGCVSDANNLVNDAISKGYIPD---IFTFNTLIDGYCKQ 474 (759)
Q Consensus 404 ~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 474 (759)
.|+..+-...+.+..+. +.|. ...|..+...|...|+++.|..+|++..+..++.- ..+|.....+-.+.
T Consensus 360 e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh 438 (835)
T KOG2047|consen 360 EGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRH 438 (835)
T ss_pred cCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhh
Confidence 45555566666665543 2221 23455666666677777777777776665433221 34455555555566
Q ss_pred CCHHHHHHHHHHHHHCCC-----------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHH
Q 004362 475 LKMEIAIEILNTMWSHGV-----------------TPDVITYNSLLNGLCKAAKSEDVMETFKTMIEKRCVPNIITYSIL 537 (759)
Q Consensus 475 ~~~~~A~~~~~~~~~~~~-----------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 537 (759)
.+++.|.++.++.....- ..+...|...+..--..|-++....+|+++++..+. ++......
T Consensus 439 ~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~Ny 517 (835)
T KOG2047|consen 439 ENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINY 517 (835)
T ss_pred hhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHH
Confidence 667777776666543210 013345666666666678888899999999987543 44444445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHc---cCChhhHHHHHHHHHHccCCCCc-h-hhHHHHHHH
Q 004362 538 GESLCKAHKITEAFNLLEEMENKGLTL-DTVAFGTLINGFCN---SGDLDGAYQLFRRMEDQYKISHT-T-ATYNIMINA 611 (759)
Q Consensus 538 ~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~-~-~~~~~l~~~ 611 (759)
+..+....-++++.++|++-+..-..| -...|+..+.-+.+ .-+++.|..+|+++.+. .||. . .+|...+..
T Consensus 518 AmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~--Cpp~~aKtiyLlYA~l 595 (835)
T KOG2047|consen 518 AMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDG--CPPEHAKTIYLLYAKL 595 (835)
T ss_pred HHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHH
Confidence 555667778899999999887762222 33567766655433 34689999999999996 4443 2 333334444
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCC--HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH---HhcC
Q 004362 612 FSEKLNFYMAEKLFYEMSEKGCPPD--NYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSLSTIGRVINCL---CVDH 686 (759)
Q Consensus 612 ~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~---~~~g 686 (759)
--+.|-...|+++|+++... +++. ...|+..+.--...=-......+|+++++ .-|+...-...+..- .+.|
T Consensus 596 EEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe--~Lp~~~~r~mclrFAdlEtklG 672 (835)
T KOG2047|consen 596 EEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIE--SLPDSKAREMCLRFADLETKLG 672 (835)
T ss_pred HHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHH--hCChHHHHHHHHHHHHHhhhhh
Confidence 45678999999999998754 4544 45677777543333345667889999999 678766554444333 6889
Q ss_pred cHHHHHHHHHHHHHCCCCC----chHHHHHhc--cccccccchH
Q 004362 687 RVHEAVGFVHLMVQKGIVP----EVVNTIFEA--DKREVASPKI 724 (759)
Q Consensus 687 ~~~~A~~~~~~~~~~~~~p----~~~~~~~~~--~~~~~~~a~~ 724 (759)
..+.|..++.--.+ =.+| +.|.+|-.. ++|+-+--+.
T Consensus 673 EidRARaIya~~sq-~~dPr~~~~fW~twk~FEvrHGnedT~ke 715 (835)
T KOG2047|consen 673 EIDRARAIYAHGSQ-ICDPRVTTEFWDTWKEFEVRHGNEDTYKE 715 (835)
T ss_pred hHHHHHHHHHhhhh-cCCCcCChHHHHHHHHHHHhcCCHHHHHH
Confidence 99999998876544 1334 388888555 8998443333
No 38
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=1.4e-13 Score=128.96 Aligned_cols=382 Identities=12% Similarity=0.064 Sum_probs=262.8
Q ss_pred CCChhcHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhH--H
Q 004362 318 EPDGFSYNAVIDGYCKAGMISSADKILNDAIFKGFVPDEFTYCSLINGLCQDGDVDRAMAVYVKALEKGLKPSIVLY--N 395 (759)
Q Consensus 318 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~--~ 395 (759)
..|...+-...-.+-+.|..+.|+..+...+.. -+..|.+.+....-..+.+.+..+ .... ..+.... -
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~e~~~~l----~~~l-~~~~h~M~~~ 231 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDIEILSIL----VVGL-PSDMHWMKKF 231 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchHHHHHHH----HhcC-cccchHHHHH
Confidence 335444444445556677888888888777643 233333333322222233322221 1111 1121111 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--CCHhhHHHHHHHHHh
Q 004362 396 TLIKGLSQQGLILQALQLMNEMSESGCCPDMWTYNIVINGLCKMGCVSDANNLVNDAISKGYI--PDIFTFNTLIDGYCK 473 (759)
Q Consensus 396 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~ 473 (759)
-+..++....+.+++..-.+.....|++-+...-+....+.-...+++.|+.+|+++.+..+- .|..+|..++ |.+
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~ 309 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVK 309 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHH
Confidence 233455555678888888888888887766666666666666788899999999998887311 2456666655 333
Q ss_pred cCCHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHH
Q 004362 474 QLKMEIAIEILN-TMWSHGVTPDVITYNSLLNGLCKAAKSEDVMETFKTMIEKRCVPNIITYSILGESLCKAHKITEAFN 552 (759)
Q Consensus 474 ~~~~~~A~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 552 (759)
..+-. +..+. ...+.+ +--+.|...+.+-|.-.++.++|+.+|++.++.+ +-....|+.++.-|....+...|+.
T Consensus 310 ~~~sk--Ls~LA~~v~~id-KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~ 385 (559)
T KOG1155|consen 310 NDKSK--LSYLAQNVSNID-KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIE 385 (559)
T ss_pred hhhHH--HHHHHHHHHHhc-cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHH
Confidence 32221 11111 111111 1245577778888888899999999999999875 2355688899999999999999999
Q ss_pred HHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004362 553 LLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKG 632 (759)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 632 (759)
-++++++. .|.|-..|..+..+|...+...=|+-+|+++... .|.|...|..|+.+|.+.++.++|++.|+++...+
T Consensus 386 sYRrAvdi-~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~--kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~ 462 (559)
T KOG1155|consen 386 SYRRAVDI-NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL--KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG 462 (559)
T ss_pred HHHHHHhc-CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc
Confidence 99999987 4678899999999999999999999999999888 89999999999999999999999999999998765
Q ss_pred CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHH-HhcCcHHHHHHHHHHHHHCCCCCc
Q 004362 633 CPPDNYTYRIMIDSFCKTGGINSGYCLLLENIDK----GF-IPSLSTIGRVINCL-CVDHRVHEAVGFVHLMVQKGIVPE 706 (759)
Q Consensus 633 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~-~p~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~p~ 706 (759)
..+...+..|+..|-+.++.++|..+|++-++. |. .|+.......+..+ .+.+++++|..+..+....
T Consensus 463 -dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~----- 536 (559)
T KOG1155|consen 463 -DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG----- 536 (559)
T ss_pred -ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC-----
Confidence 446788999999999999999999999988762 32 33333334445555 6889999998877776542
Q ss_pred hHHHHHhccccccccchHHHHHHHhc
Q 004362 707 VVNTIFEADKREVASPKIVVEDLLKK 732 (759)
Q Consensus 707 ~~~~~~~~~~~~~~~a~~~~~~~~~~ 732 (759)
....++|+.+++++.+.
T Consensus 537 ---------~~e~eeak~LlReir~~ 553 (559)
T KOG1155|consen 537 ---------ETECEEAKALLREIRKI 553 (559)
T ss_pred ---------CchHHHHHHHHHHHHHh
Confidence 22446777777776653
No 39
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=2.7e-13 Score=127.10 Aligned_cols=379 Identities=11% Similarity=0.035 Sum_probs=275.6
Q ss_pred CCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcc--cHH
Q 004362 283 TPDVVTYNTLMCGLCKNSKVVEAEYYLHKMVNEGLEPDGFSYNAVIDGYCKAGMISSADKILNDAIFKGFVPDEF--TYC 360 (759)
Q Consensus 283 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~ 360 (759)
..|...+-...-.+.+.|....|++.|...... -+..|.+.+....-..+.+.+..+ .. +.+.+.. .--
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~e~~~~l----~~-~l~~~~h~M~~~ 231 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDIEILSIL----VV-GLPSDMHWMKKF 231 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchHHHHHHH----Hh-cCcccchHHHHH
Confidence 455555555555666788999999999888754 345566555554444444333222 21 1222221 112
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHh
Q 004362 361 SLINGLCQDGDVDRAMAVYVKALEKGLKPSIVLYNTLIKGLSQQGLILQALQLMNEMSESGCC--PDMWTYNIVINGLCK 438 (759)
Q Consensus 361 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~ 438 (759)
-+..++....+.+++..-.......|++.+...-+....+.-...++++|+.+|+++.+...- -|..+|+.++..-..
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~ 311 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh
Confidence 344566666788888888888888888877766666666777889999999999999987321 156677777644322
Q ss_pred cCChHHHHHHHHH-HHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004362 439 MGCVSDANNLVND-AISKGYIPDIFTFNTLIDGYCKQLKMEIAIEILNTMWSHGVTPDVITYNSLLNGLCKAAKSEDVME 517 (759)
Q Consensus 439 ~~~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 517 (759)
.... ..+.+ ..... +-.+.|...+.+-|+-.++.++|...|++.++.+.. ....|+.+..-|....+...|++
T Consensus 312 ~skL----s~LA~~v~~id-KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~ 385 (559)
T KOG1155|consen 312 KSKL----SYLAQNVSNID-KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIE 385 (559)
T ss_pred hHHH----HHHHHHHHHhc-cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHH
Confidence 2211 11211 11111 234567777888899999999999999999997532 57789999999999999999999
Q ss_pred HHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccC
Q 004362 518 TFKTMIEKRCVPNIITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYK 597 (759)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 597 (759)
.|++.++-+ +.|-..|..++++|.-.+.+.-|.-.|+++... -|.|+..|.++..+|.+.++.++|++.|.++...
T Consensus 386 sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~-kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~-- 461 (559)
T KOG1155|consen 386 SYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL-KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL-- 461 (559)
T ss_pred HHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc--
Confidence 999999875 458889999999999999999999999999987 5779999999999999999999999999999987
Q ss_pred CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----C-CCCC-HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 004362 598 ISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEK----G-CPPD-NYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPS 671 (759)
Q Consensus 598 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 671 (759)
...+..++..++..|-+.++..+|.+.|++.++. | +.|. ..+...|..-+.+.+++++|..+..+... ..|.
T Consensus 462 ~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~--~~~e 539 (559)
T KOG1155|consen 462 GDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK--GETE 539 (559)
T ss_pred cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc--CCch
Confidence 3336688999999999999999999999988763 2 2232 23333466677889999999998888777 3555
Q ss_pred HHHHHHHHHHH
Q 004362 672 LSTIGRVINCL 682 (759)
Q Consensus 672 ~~~~~~l~~~~ 682 (759)
......++..+
T Consensus 540 ~eeak~LlRei 550 (559)
T KOG1155|consen 540 CEEAKALLREI 550 (559)
T ss_pred HHHHHHHHHHH
Confidence 54444444433
No 40
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=2.7e-14 Score=134.56 Aligned_cols=220 Identities=14% Similarity=0.112 Sum_probs=178.8
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHH
Q 004362 471 YCKQLKMEIAIEILNTMWSHGVTPDVITYNSLLNGLCKAAKSEDVMETFKTMIEKRCVPNIITYSILGESLCKAHKITEA 550 (759)
Q Consensus 471 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 550 (759)
+.-.|+.-.|..-|+..++....+ ...|--+..+|....+.++.+..|+...+.+ +-++.+|..-++.+.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHH
Confidence 345788899999999999874333 2337777788999999999999999999876 44788999999999999999999
Q ss_pred HHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004362 551 FNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSE 630 (759)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 630 (759)
..=|++.++. -|.+...|..+.-+..+.+.++++...|+....+ .|..+..|+..+.++..+++++.|.+.|+.+++
T Consensus 414 ~aDF~Kai~L-~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 414 IADFQKAISL-DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHhhc-ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 9999999886 2445666777777788999999999999999999 888999999999999999999999999999985
Q ss_pred cCCCCC---------HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCcHHHHHHHHHHHHH
Q 004362 631 KGCPPD---------NYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSLSTIGRVINCL-CVDHRVHEAVGFVHLMVQ 700 (759)
Q Consensus 631 ~~~~p~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~ 700 (759)
. .|+ +.+...++..-. .+++..|+.+++++++ ++|.....+.-+..+ ...|+.++|+++|++...
T Consensus 491 L--E~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 491 L--EPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred h--ccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4 555 112222222223 3899999999999999 999877666555555 899999999999999764
No 41
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.74 E-value=6.7e-11 Score=115.83 Aligned_cols=610 Identities=11% Similarity=0.097 Sum_probs=313.4
Q ss_pred CHHHHHHHHHHHHhCC-ChHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHh--------cCChhHHHHHHHHhhhCCCCC
Q 004362 39 TLLTYKYMIDKLGFHG-NFEEMENLLLEMRMDVDDSLLEGVHIGVMRNYGR--------RGKVQEAVDVFERMDFYNCEP 109 (759)
Q Consensus 39 ~~~~~~~l~~~l~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~~ 109 (759)
+..+|...+.. ++| -..+-..+|+++.+..|. +-.+|..-++.-.. ..-++..-.+|++....- ..
T Consensus 26 svk~W~RYIe~--k~~sp~k~~~~lYERal~~lp~--sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~m-Hk 100 (835)
T KOG2047|consen 26 SVKCWLRYIEH--KAGSPDKQRNLLYERALKELPG--SYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFM-HK 100 (835)
T ss_pred hHHHHHHHHHH--HccCChHHHHHHHHHHHHHCCC--chHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHH-hc
Confidence 44445444432 222 234455566666666666 55555554422111 122333444444433111 23
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHccCChhhHHHHHhhchhCCCCCCHHhHHHHH
Q 004362 110 TVLSYNTIMNILVEYGYFSQVHKVYMRMRNK-GIVPDVYTFVIRIKSFCRTRRPHVALRLLKNMPSQGFEPNAVAYCTLI 188 (759)
Q Consensus 110 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 188 (759)
-+..|-..+..+.++|+...-...|++.+.. .+.....+|...+...-..+-++.+..+++...+.. +..-+..|
T Consensus 101 mpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~----P~~~eeyi 176 (835)
T KOG2047|consen 101 MPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA----PEAREEYI 176 (835)
T ss_pred CCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC----HHHHHHHH
Confidence 4456777777778888888888888887654 223345567777777777777778888888777653 44567777
Q ss_pred HHHHhcCChhHHHHHHHHHHhCC------CCCChhhHHHHHHHHHhcCCh---hHHHHHHHHHhhCCCCCC--HHHHHHH
Q 004362 189 AGFYEENHNVEAYELFDEMLGMG------ISPDIATFNKLIHTLCKKGNV---RESEKLFNKVLKRGVSPN--LFTFNMF 257 (759)
Q Consensus 189 ~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~--~~~~~~l 257 (759)
..+...+++++|.+.+....... .+.+...|..+-...++..+. -....+++.++.. -+| ...|++|
T Consensus 177 e~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SL 254 (835)
T KOG2047|consen 177 EYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSL 254 (835)
T ss_pred HHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHH
Confidence 77788888888888887776431 122333455554544443322 2233444444332 233 3467888
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhCCCh----------------------HHHHHHHHHHHHC
Q 004362 258 IQGLCRKGAISEAISLLDSLGREDLTPDVVTYNTLMCGLCKNSKV----------------------VEAEYYLHKMVNE 315 (759)
Q Consensus 258 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------------------~~a~~~~~~~~~~ 315 (759)
.+.|++.|.+++|..++++.... ..++..++.+.++|+..... +-...-|+.+...
T Consensus 255 AdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~r 332 (835)
T KOG2047|consen 255 ADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNR 332 (835)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhc
Confidence 88888888888888888876644 33444455555555432111 1111112222211
Q ss_pred CC-----------CCChhcHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC------cccHHHHHHHHHhcCCHHHHHHH
Q 004362 316 GL-----------EPDGFSYNAVIDGYCKAGMISSADKILNDAIFKGFVPD------EFTYCSLINGLCQDGDVDRAMAV 378 (759)
Q Consensus 316 ~~-----------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~ 378 (759)
.. +-+...|..-+ -...|+..+....+.++++. +.|. ...|..+...|-..|+++.|+.+
T Consensus 333 r~~~lNsVlLRQn~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvi 409 (835)
T KOG2047|consen 333 RPLLLNSVLLRQNPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVI 409 (835)
T ss_pred cchHHHHHHHhcCCccHHHHHhhh--hhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHH
Confidence 00 00111111111 11234444444555554432 1111 12344455555555666666666
Q ss_pred HHHHHHcCCCCC---HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 004362 379 YVKALEKGLKPS---IVLYNTLIKGLSQQGLILQALQLMNEMSESGCCPDMWTYNIVINGLCKMGCVSDANNLVNDAISK 455 (759)
Q Consensus 379 ~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 455 (759)
|++..+...+-- ..+|......-.+..+++.|+++++..... |.... ..+...+.+-.+.
T Consensus 410 feka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v---P~~~~-----~~~yd~~~pvQ~r--------- 472 (835)
T KOG2047|consen 410 FEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV---PTNPE-----LEYYDNSEPVQAR--------- 472 (835)
T ss_pred HHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC---CCchh-----hhhhcCCCcHHHH---------
Confidence 655554422211 122333333333445555555555544432 11110 0111111111100
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh-cH
Q 004362 456 GYIPDIFTFNTLIDGYCKQLKMEIAIEILNTMWSHGVTPDVITYNSLLNGLCKAAKSEDVMETFKTMIEKRCVPNII-TY 534 (759)
Q Consensus 456 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~ 534 (759)
+..+...|...++.-...|-++....+|+++++..+- ++.........+-.+.-++++.++|++-+..-..|+.. .|
T Consensus 473 -lhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW 550 (835)
T KOG2047|consen 473 -LHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIW 550 (835)
T ss_pred -HHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHH
Confidence 0113445666666666777788888888888776543 33333333334455566778888887766653344432 34
Q ss_pred HHHHHHHH-h--cCCHHHHHHHHHHHHHCCCCccHHH--HHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHH
Q 004362 535 SILGESLC-K--AHKITEAFNLLEEMENKGLTLDTVA--FGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMI 609 (759)
Q Consensus 535 ~~l~~~~~-~--~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 609 (759)
+..+..+. + ....+.|..+|+++++ +.||...- |......-.+.|....|+.+|+++...-....-...|+..+
T Consensus 551 ~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I 629 (835)
T KOG2047|consen 551 NTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYI 629 (835)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 33333332 2 2357888888888887 46654332 23333333456777888888888766522222234455444
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHH---HHHHHHhcCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHh
Q 004362 610 NAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRI---MIDSFCKTGGINSGYCLLLENIDKGFIP--SLSTIGRVINCLCV 684 (759)
Q Consensus 610 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~---l~~~~~~~g~~~~A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~ 684 (759)
.--...=-...-..+|+++++. -||...-.. ....-.+.|..+.|..++.-..+. .+| +...|..+-..=.+
T Consensus 630 ~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~-~dPr~~~~fW~twk~FEvr 706 (835)
T KOG2047|consen 630 KKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI-CDPRVTTEFWDTWKEFEVR 706 (835)
T ss_pred HHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc-CCCcCChHHHHHHHHHHHh
Confidence 3222222233456677777754 455433322 233456678888888887776652 344 34445555444467
Q ss_pred cCc
Q 004362 685 DHR 687 (759)
Q Consensus 685 ~g~ 687 (759)
.|+
T Consensus 707 HGn 709 (835)
T KOG2047|consen 707 HGN 709 (835)
T ss_pred cCC
Confidence 777
No 42
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=4.5e-13 Score=129.10 Aligned_cols=510 Identities=12% Similarity=0.017 Sum_probs=310.3
Q ss_pred CHHHHHHHHHHHHccCChhhHHHHHhhchhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 004362 145 DVYTFVIRIKSFCRTRRPHVALRLLKNMPSQGFEPNAVAYCTLIAGFYEENHNVEAYELFDEMLGMGISPDIATFNKLIH 224 (759)
Q Consensus 145 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 224 (759)
+..-+..+.+-+....++..|.-+-+++...+ .|+..---++..+.-.+++.+|..+...-.-. ..|..+......
T Consensus 15 s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~ 90 (611)
T KOG1173|consen 15 SLEKYRRLVRDALMQHRYKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAK 90 (611)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHH
Confidence 34455566666666667777777666666554 33444444556666666777766665554322 335556666666
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhCCChHH
Q 004362 225 TLCKKGNVRESEKLFNKVLKRGVSPNLFTFNMFIQGLCRKGAISEAISLLDSLGREDLTPDVVTYNTLMCGLCKNSKVVE 304 (759)
Q Consensus 225 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 304 (759)
.+.+..+++.|..++.... +..++..+..-- + ...-..+.+. +... +......+-.-...|......++
T Consensus 91 ~l~~lk~~~~al~vl~~~~---~~~~~f~yy~~~-~-~~~l~~n~~~----~~~~--~~~essic~lRgk~y~al~n~~~ 159 (611)
T KOG1173|consen 91 CLVKLKEWDQALLVLGRGH---VETNPFSYYEKD-A-ANTLELNSAG----EDLM--INLESSICYLRGKVYVALDNREE 159 (611)
T ss_pred HHHHHHHHHHHHHHhcccc---hhhcchhhcchh-h-hceeccCccc----cccc--ccchhceeeeeeehhhhhccHHH
Confidence 6667777777776665321 011111110000 0 0000000111 0000 01111111112234555667788
Q ss_pred HHHHHHHHHHCCCCCChhcHHHHHHHHHHcCChhHHHHHHHHHHhCCCC----CCcccHHHHHHHHHhcCCHHHHHHHHH
Q 004362 305 AEYYLHKMVNEGLEPDGFSYNAVIDGYCKAGMISSADKILNDAIFKGFV----PDEFTYCSLINGLCQDGDVDRAMAVYV 380 (759)
Q Consensus 305 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~ 380 (759)
|...|.+.... |...+..+...-. . ..-.+.+.++.+...... .+......+.....-...-+.....-.
T Consensus 160 ar~~Y~~Al~~----D~~c~Ea~~~lvs-~-~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~ 233 (611)
T KOG1173|consen 160 ARDKYKEALLA----DAKCFEAFEKLVS-A-HMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNE 233 (611)
T ss_pred HHHHHHHHHhc----chhhHHHHHHHHH-H-HhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCc
Confidence 88888777654 4444433322111 1 111121222222211100 011111111111100000000000000
Q ss_pred HHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 004362 381 KALEKGLKPSIVLYNTLIKGLSQQGLILQALQLMNEMSESGCCPDMWTYNIVINGLCKMGCVSDANNLVNDAISKGYIPD 460 (759)
Q Consensus 381 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 460 (759)
+..-.+..-++.....-.+-+....++.+..++.+.+.+.. ++....+..-|.++...|+..+-..+-.++++. .|..
T Consensus 234 ~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~ 311 (611)
T KOG1173|consen 234 DESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSK 311 (611)
T ss_pred hhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCC
Confidence 01111223355666666677778889999999999888763 445555555666777888888877777777776 3557
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHH
Q 004362 461 IFTFNTLIDGYCKQLKMEIAIEILNTMWSHGVTPDVITYNSLLNGLCKAAKSEDVMETFKTMIEKRCVPNIITYSILGES 540 (759)
Q Consensus 461 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 540 (759)
+.+|-++.--|...|+.++|.+.|.+....+.. -...|-.+...|+-.|..++|+..|....+. ++-....+..++--
T Consensus 312 a~sW~aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgme 389 (611)
T KOG1173|consen 312 ALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGME 389 (611)
T ss_pred CcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHH
Confidence 788888888888889999999999888765322 2457888888899999999999988888775 23344456667777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccC-----CCCchhhHHHHHHHHHhc
Q 004362 541 LCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYK-----ISHTTATYNIMINAFSEK 615 (759)
Q Consensus 541 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~ 615 (759)
|.+.++.+.|..+|.++... .|.|+...+.+.-.....+.+.+|..+|+.....-. .+....++++++++|.+.
T Consensus 390 y~~t~n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl 468 (611)
T KOG1173|consen 390 YMRTNNLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKL 468 (611)
T ss_pred HHHhccHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHH
Confidence 88899999999999998876 566888888887777788899999999988873211 122445688999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004362 616 LNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSLSTIGRVINCLC 683 (759)
Q Consensus 616 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~ 683 (759)
+.+++|+..+++.+... +.+..++.+++-.|...|+++.|+..|.+++- +.|++.....++....
T Consensus 469 ~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 469 NKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAI 533 (611)
T ss_pred hhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHH
Confidence 99999999999988763 55688999999999999999999999999998 8899887777766543
No 43
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=3.4e-13 Score=129.92 Aligned_cols=274 Identities=8% Similarity=-0.016 Sum_probs=224.2
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004362 423 CPDMWTYNIVINGLCKMGCVSDANNLVNDAISKGYIPDIFTFNTLIDGYCKQLKMEIAIEILNTMWSHGVTPDVITYNSL 502 (759)
Q Consensus 423 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 502 (759)
.-+......-..-|...+++.+..++.+.+.+.. ++....+..-|.++...|+..+-..+-.++.+. .+....+|-++
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aV 318 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAV 318 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhH
Confidence 3355555666667788999999999999988874 556666766777888999988888888888886 34468899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCCh
Q 004362 503 LNGLCKAAKSEDVMETFKTMIEKRCVPNIITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDL 582 (759)
Q Consensus 503 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 582 (759)
.-.|.-.|+..+|.++|.+....+ +.=...|..++.+++..|..++|...+..+-+. ++-....+.-+.--|.+.+++
T Consensus 319 g~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNL 396 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccH
Confidence 999999999999999999887653 123457999999999999999999999998886 343444445555678889999
Q ss_pred hhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCC----CCHhhHHHHHHHHHhcCChHHH
Q 004362 583 DGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEK--GCP----PDNYTYRIMIDSFCKTGGINSG 656 (759)
Q Consensus 583 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~----p~~~~~~~l~~~~~~~g~~~~A 656 (759)
+.|.++|.++... .|.|+..++.++.+....+.+.+|..+|+..+.. .+. --..+++.|+.+|.+.+.+++|
T Consensus 397 kLAe~Ff~~A~ai--~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA 474 (611)
T KOG1173|consen 397 KLAEKFFKQALAI--APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA 474 (611)
T ss_pred HHHHHHHHHHHhc--CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence 9999999999998 8999999999999999999999999999987732 011 1245789999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHH-HHHHHHhcCcHHHHHHHHHHHHHCCCCCc
Q 004362 657 YCLLLENIDKGFIPSLSTIGR-VINCLCVDHRVHEAVGFVHLMVQKGIVPE 706 (759)
Q Consensus 657 ~~~~~~~~~~g~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 706 (759)
+..+++++. +.|.+..... +.-.+...|+.+.|++.|.+.+. ++|+
T Consensus 475 I~~~q~aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~ 521 (611)
T KOG1173|consen 475 IDYYQKALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPD 521 (611)
T ss_pred HHHHHHHHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCc
Confidence 999999999 8887666554 44455789999999999999987 7888
No 44
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.71 E-value=8.2e-17 Score=155.55 Aligned_cols=261 Identities=15% Similarity=0.105 Sum_probs=112.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004362 431 IVINGLCKMGCVSDANNLVNDAISKG-YIPDIFTFNTLIDGYCKQLKMEIAIEILNTMWSHGVTPDVITYNSLLNGLCKA 509 (759)
Q Consensus 431 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 509 (759)
.+...+.+.|++++|.++++...... .+.+...|..+.......++++.|.+.++++...+.. ++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 44667778888888888886554443 2345555666666777888899999999988876433 45556666666 688
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCccHHHHHHHHHHHHccCChhhHHHH
Q 004362 510 AKSEDVMETFKTMIEKRCVPNIITYSILGESLCKAHKITEAFNLLEEMENK-GLTLDTVAFGTLINGFCNSGDLDGAYQL 588 (759)
Q Consensus 510 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 588 (759)
+++++|.+++....+.. +++..+..++..+...++++++..+++.+... ..+.+...|..++..+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 89999998888776653 46667777888888999999999999998754 2356778888899999999999999999
Q ss_pred HHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 004362 589 FRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCLLLENIDKGF 668 (759)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 668 (759)
|+++.+. .|++......+++.+...|+.+++.++++...+.. +.|+..|..++.+|...|+.++|+.+++++.+ .
T Consensus 169 ~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~--~ 243 (280)
T PF13429_consen 169 YRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALK--L 243 (280)
T ss_dssp HHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH--H
T ss_pred HHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccc--c
Confidence 9999998 89899999999999999999999999998887763 56678888999999999999999999999998 7
Q ss_pred CCCHHHH-HHHHHHHHhcCcHHHHHHHHHHHHH
Q 004362 669 IPSLSTI-GRVINCLCVDHRVHEAVGFVHLMVQ 700 (759)
Q Consensus 669 ~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~ 700 (759)
.|+++.+ ..+...+...|+.++|..+++++..
T Consensus 244 ~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 244 NPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp STT-HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccccccc
Confidence 7865555 5677777899999999999988754
No 45
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=4.8e-14 Score=132.89 Aligned_cols=227 Identities=10% Similarity=0.061 Sum_probs=186.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChh
Q 004362 504 NGLCKAAKSEDVMETFKTMIEKRCVPNIITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLD 583 (759)
Q Consensus 504 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 583 (759)
..+.-.|+.-.|.+-|+..++....+ ...|..+..+|....+.++....|++..+.+ +.++.+|..-..++.-.++++
T Consensus 334 tF~fL~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e 411 (606)
T KOG0547|consen 334 TFHFLKGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYE 411 (606)
T ss_pred hhhhhcCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHH
Confidence 34556789999999999999875333 3338899999999999999999999999873 557778888888888899999
Q ss_pred hHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHH
Q 004362 584 GAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCLLLEN 663 (759)
Q Consensus 584 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 663 (759)
+|..-|++.... .|.+...|..+..+..+.++++++...|++..++ +|.-+.+|+..+.++...++++.|.+.|+.+
T Consensus 412 ~A~aDF~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~a 488 (606)
T KOG0547|consen 412 EAIADFQKAISL--DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKA 488 (606)
T ss_pred HHHHHHHHHhhc--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHH
Confidence 999999999999 8999999999999999999999999999999987 4555999999999999999999999999999
Q ss_pred HhCCCCCC------HHHHH--HHHHHHHhcCcHHHHHHHHHHHHHCCCCCc---hHHHHHhc--cccccccchHHHHHHH
Q 004362 664 IDKGFIPS------LSTIG--RVINCLCVDHRVHEAVGFVHLMVQKGIVPE---VVNTIFEA--DKREVASPKIVVEDLL 730 (759)
Q Consensus 664 ~~~g~~p~------~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~~~--~~~~~~~a~~~~~~~~ 730 (759)
++ +.|. +.... .-+-.+...++.+.|.++++++.+ ++|. ..-++... ..|+.++|..+|++..
T Consensus 489 i~--LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 489 IE--LEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred Hh--hccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99 8886 22221 122222356999999999999998 7787 23333333 8899999999999987
Q ss_pred hcCCCchHH
Q 004362 731 KKSHITYYA 739 (759)
Q Consensus 731 ~~~~~~~~~ 739 (759)
.+...-.+.
T Consensus 565 ~lArt~~E~ 573 (606)
T KOG0547|consen 565 QLARTESEM 573 (606)
T ss_pred HHHHhHHHH
Confidence 766655543
No 46
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.69 E-value=1.5e-13 Score=138.89 Aligned_cols=283 Identities=12% Similarity=0.092 Sum_probs=155.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHh-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHhcCChHHH
Q 004362 369 DGDVDRAMAVYVKALEKGLKPSIVL-YNTLIKGLSQQGLILQALQLMNEMSESGCCPDMWTYN--IVINGLCKMGCVSDA 445 (759)
Q Consensus 369 ~~~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a 445 (759)
.|+++.|.+......+... ++.. +-....+..+.|+++.|...+.++.+. .|+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~~--~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAE--QPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhccc--chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 5666666666555444311 1222 222233335666677777777666654 33332222 224456666777777
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-------HHHHHHHHHHhcCCHHHHHHH
Q 004362 446 NNLVNDAISKGYIPDIFTFNTLIDGYCKQLKMEIAIEILNTMWSHGVTPDVI-------TYNSLLNGLCKAAKSEDVMET 518 (759)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~ 518 (759)
...++.+.+.. +.++.....+...|.+.|++++|.+++..+.+.+..++.. +|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 77777666654 3355666666667777777777777777776654332211 122222222233334444555
Q ss_pred HHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCC
Q 004362 519 FKTMIEKRCVPNIITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKI 598 (759)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 598 (759)
|+.+.+. .+.++.....++..+...|+.++|..++++..+. +++..... +.+....++.+++.+..+...+. .
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~~--l~~~l~~~~~~~al~~~e~~lk~--~ 324 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLVL--LIPRLKTNNPEQLEKVLRQQIKQ--H 324 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHH--HHhhccCCChHHHHHHHHHHHhh--C
Confidence 5554332 2335555666666666666666666666666653 33443221 22223446666666666666665 5
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004362 599 SHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCLLLENID 665 (759)
Q Consensus 599 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 665 (759)
|+++..+..++..+...+++++|.+.|+++.+. .|+..++..+..++.+.|+.++|..++++.+.
T Consensus 325 P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 325 GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 666666666666666666666666666666643 46666656666666666666666666666554
No 47
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.68 E-value=2e-13 Score=138.87 Aligned_cols=128 Identities=11% Similarity=-0.014 Sum_probs=67.8
Q ss_pred cHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-H--hh
Q 004362 565 DTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATY--NIMINAFSEKLNFYMAEKLFYEMSEKGCPPD-N--YT 639 (759)
Q Consensus 565 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~--~~ 639 (759)
+...+..++..+...|+.++|.+.+++..+. .|++.... ..........++.+.+.+.+++..+. .|+ + ..
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~l 337 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCI 337 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHH
Confidence 4555555555555555555555555555554 33333211 11111222334555556666555543 233 4 44
Q ss_pred HHHHHHHHHhcCChHHHHHHHHH--HHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 004362 640 YRIMIDSFCKTGGINSGYCLLLE--NIDKGFIPSLSTIGRVINCLCVDHRVHEAVGFVHLM 698 (759)
Q Consensus 640 ~~~l~~~~~~~g~~~~A~~~~~~--~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 698 (759)
..++++.|.+.|++++|.++|++ +.+ ..|++..+.++...+.+.|+.++|.+++++.
T Consensus 338 l~sLg~l~~~~~~~~~A~~~le~a~a~~--~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 338 NRALGQLLMKHGEFIEAADAFKNVAACK--EQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHhHHhh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55666666666666666666663 333 5566665555655556666666666666654
No 48
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.68 E-value=2.2e-13 Score=137.68 Aligned_cols=283 Identities=10% Similarity=0.003 Sum_probs=219.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHH--HHHHHHHhcCCHHHH
Q 004362 404 QGLILQALQLMNEMSESGCCPDMWT-YNIVINGLCKMGCVSDANNLVNDAISKGYIPDIFTFN--TLIDGYCKQLKMEIA 480 (759)
Q Consensus 404 ~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~A 480 (759)
.|+++.|.+.+....+.. +++.. +..........|+++.+...+.++.+. .|+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 699999998888766542 22333 333344557899999999999999876 44543332 346788899999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh-------cHHHHHHHHHhcCCHHHHHHH
Q 004362 481 IEILNTMWSHGVTPDVITYNSLLNGLCKAAKSEDVMETFKTMIEKRCVPNII-------TYSILGESLCKAHKITEAFNL 553 (759)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~ 553 (759)
...++++.+.. +-+......+...|.+.|++++|.+++..+.+.+..++.. ++..++.......+.+...++
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999999875 3367788889999999999999999999999875443221 223333333444556667777
Q ss_pred HHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 004362 554 LEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGC 633 (759)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 633 (759)
++.+.+. .+.++.....++..+...|+.++|.+.+++..+. ++++... +..+....++.+++++..++..+..
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~- 324 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH- 324 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-
Confidence 7776554 4668888899999999999999999999999875 4444332 2333345599999999999999763
Q ss_pred CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 004362 634 PPDNYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSLSTIGRVINCLCVDHRVHEAVGFVHLMVQ 700 (759)
Q Consensus 634 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 700 (759)
|.|+..+..++..|...|++++|..+|+++++ ..|+...+..+...+.+.|+.++|..++++...
T Consensus 325 P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 325 GDTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44477888999999999999999999999999 889999988888888999999999999998765
No 49
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.68 E-value=3.3e-13 Score=137.30 Aligned_cols=294 Identities=13% Similarity=0.078 Sum_probs=213.0
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 004362 366 LCQDGDVDRAMAVYVKALEKGLKPSIVLYNTLIKGLSQQGLILQALQLMNEMSESGCCPDMWTYNIVINGLCKMGCVSDA 445 (759)
Q Consensus 366 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 445 (759)
....|+++.|.+.+.+..+..+. +...+-....+..+.|+++.|...+.+..+....+...........+...|+++.|
T Consensus 94 a~~~g~~~~A~~~l~~~~~~~~~-~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 94 KLAEGDYAKAEKLIAKNADHAAE-PVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HHhCCCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 35689999999999888776433 23333445566778899999999999987653222223344457778889999999
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHH---HhcCCHHHHHHHHHH
Q 004362 446 NNLVNDAISKGYIPDIFTFNTLIDGYCKQLKMEIAIEILNTMWSHGVTPDVITY-NSLLNGL---CKAAKSEDVMETFKT 521 (759)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~---~~~~~~~~a~~~~~~ 521 (759)
...++.+.+.. +.++.+...+...+...|+++.|.+.+..+.+.++. +...+ ..-..++ ...+..+++.+.+..
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999998875 446778888899999999999999999999988654 33333 2222222 333333444445555
Q ss_pred HHHcCC---CCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHH--HHHccCChhhHHHHHHHHHHcc
Q 004362 522 MIEKRC---VPNIITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLIN--GFCNSGDLDGAYQLFRRMEDQY 596 (759)
Q Consensus 522 ~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~ 596 (759)
+.+... +.+...+..++..+...|+.++|.+++++..+.. +.+......++. .....++.+.+.+.++...+.
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~-pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~- 328 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL-GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN- 328 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh-
Confidence 555421 1377788888899999999999999999999863 223221111222 223457888899999998888
Q ss_pred CCCCch--hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004362 597 KISHTT--ATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCLLLENID 665 (759)
Q Consensus 597 ~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 665 (759)
.|+++ .....+++.+.+.|++++|.+.|++.......|+...+..++..+.+.|+.++|.+++++.+.
T Consensus 329 -~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 329 -VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred -CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 78888 888899999999999999999999533334478888888999999999999999999998765
No 50
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=3e-14 Score=140.21 Aligned_cols=286 Identities=12% Similarity=0.074 Sum_probs=195.9
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CCCHhhHHHHHHHHHhcCCHHHHHHH
Q 004362 406 LILQALQLMNEMSESGCCPDMWTYNIVINGLCKMGCVSDANNLVNDAISKGY--IPDIFTFNTLIDGYCKQLKMEIAIEI 483 (759)
Q Consensus 406 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~ 483 (759)
+..+|+..|..+... +.-..+....+.++|...+++++|..+|+.+.+... ..+..+|.+.+.-+- + +-++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq---~-~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQ---D-EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHH---h-hHHHHH
Confidence 467788888775443 333456667777888888888888888888776521 124455555543321 1 122222
Q ss_pred H-HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004362 484 L-NTMWSHGVTPDVITYNSLLNGLCKAAKSEDVMETFKTMIEKRCVPNIITYSILGESLCKAHKITEAFNLLEEMENKGL 562 (759)
Q Consensus 484 ~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 562 (759)
+ +.+.+.. +-.+.+|.++..+|.-+++.+.|++.|++.++.+ +-...+|+.++.-+.....+|.|...|+.++.. .
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~-~ 485 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV-D 485 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC-C
Confidence 2 3333332 3357788888888888888888888888887753 115567777777777778888888888887764 2
Q ss_pred CccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHH
Q 004362 563 TLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRI 642 (759)
Q Consensus 563 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 642 (759)
+-+-.+|..+...|.+.++++.|.-.|+++.+. .|.+......++..+.+.|+.++|+.+++++...+ +.|+.+-..
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I--NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~ 562 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI--NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYH 562 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcC--CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHH
Confidence 334556677777888888888888888888877 77777777888888888888888888888887553 335666666
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHhcCcHHHHHHHHHHHHHCCCCCc
Q 004362 643 MIDSFCKTGGINSGYCLLLENIDKGFIPSLSTIGRVIN-CLCVDHRVHEAVGFVHLMVQKGIVPE 706 (759)
Q Consensus 643 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~p~ 706 (759)
-+..+...+++++|+..++++.+ +.|+......++. .+-+.|+.+.|+.-|--|.+ ++|.
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~--ldpk 623 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALD--LDPK 623 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhc--CCCc
Confidence 66677778888888888888887 7787665554444 44567888888887777766 4554
No 51
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.66 E-value=6.2e-16 Score=149.42 Aligned_cols=262 Identities=14% Similarity=0.116 Sum_probs=101.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc
Q 004362 396 TLIKGLSQQGLILQALQLMNEMSESGCCP-DMWTYNIVINGLCKMGCVSDANNLVNDAISKGYIPDIFTFNTLIDGYCKQ 474 (759)
Q Consensus 396 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 474 (759)
.+...+.+.|++++|++++++......+| +...|..+...+...++++.|...++.+...+. .++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccc
Confidence 34555666777777777775544332123 333334444455567777777777777766542 245555566655 577
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCChhcHHHHHHHHHhcCCHHHHHHH
Q 004362 475 LKMEIAIEILNTMWSHGVTPDVITYNSLLNGLCKAAKSEDVMETFKTMIEKR-CVPNIITYSILGESLCKAHKITEAFNL 553 (759)
Q Consensus 475 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~ 553 (759)
+++++|.+++....+. .++...+...+..+...++++++..+++.+.... .+++...|..++..+.+.|++++|...
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7777777777766554 2455666677777777788888888877766542 234566777777888888888888888
Q ss_pred HHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 004362 554 LEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGC 633 (759)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 633 (759)
++++++. .|.+......++..+...|+.+++.++++..... .|+++..+..++.++...|+.++|+.+++++.+..
T Consensus 169 ~~~al~~-~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~- 244 (280)
T PF13429_consen 169 YRKALEL-DPDDPDARNALAWLLIDMGDYDEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN- 244 (280)
T ss_dssp HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-
T ss_pred HHHHHHc-CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CcCHHHHHHHHHHHhcccccccccccccccccccc-
Confidence 8888875 3446777778888888888888888888887776 46777788888888888888888888888887653
Q ss_pred CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004362 634 PPDNYTYRIMIDSFCKTGGINSGYCLLLENID 665 (759)
Q Consensus 634 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 665 (759)
+.|+.+...++.++...|+.++|..+.+++.+
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp TT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 44677778888888888888888888777654
No 52
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.65 E-value=1e-10 Score=117.41 Aligned_cols=125 Identities=12% Similarity=0.034 Sum_probs=85.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHH
Q 004362 604 TYNIMINAFSEKLNFYMAEKLFYEMSEKGCPP-DNYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSL-STIGRVINC 681 (759)
Q Consensus 604 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~ 681 (759)
.|...+..+...++.++|...+.++... .| .+..|...+..+...|.+.+|...|..++. ++|+. .....+...
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~--~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~ 727 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASKI--DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAEL 727 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhc--chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHH
Confidence 3445566677777777777777776633 34 366777777777778888888888888877 77764 444556666
Q ss_pred HHhcCcHHHHHH--HHHHHHHCCCCCc---hHHHHHhc--cccccccchHHHHHHHhcCC
Q 004362 682 LCVDHRVHEAVG--FVHLMVQKGIVPE---VVNTIFEA--DKREVASPKIVVEDLLKKSH 734 (759)
Q Consensus 682 ~~~~g~~~~A~~--~~~~~~~~~~~p~---~~~~~~~~--~~~~~~~a~~~~~~~~~~~~ 734 (759)
+.+.|+..-|.. ++..+++ ++|+ .|..+... +.|+.++|-.+|+-+.....
T Consensus 728 lle~G~~~la~~~~~L~dalr--~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 728 LLELGSPRLAEKRSLLSDALR--LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred HHHhCCcchHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence 677777666666 7777776 4444 56555555 77777888888877776543
No 53
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.65 E-value=5.6e-11 Score=119.29 Aligned_cols=240 Identities=16% Similarity=0.086 Sum_probs=140.9
Q ss_pred CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHH
Q 004362 211 GISPDIATFNKLIHTLCKKGNVRESEKLFNKVLKRGVSPNLFTFNMFIQGLCRKGAISEAISLLDSLGREDLTPDVVTYN 290 (759)
Q Consensus 211 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 290 (759)
.+..|...|..+.-+....|++..+.+.|++.+.- .......|..+...|...|....|..+++........|+..+--
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 34557777777777788888888888888887654 33356678888888888888888888887765443224333322
Q ss_pred HHH-HHHH-hCCChHHHHHHHHHHHHC--CC--CCChhcHHHHHHHHHHc-----------CChhHHHHHHHHHHhCCCC
Q 004362 291 TLM-CGLC-KNSKVVEAEYYLHKMVNE--GL--EPDGFSYNAVIDGYCKA-----------GMISSADKILNDAIFKGFV 353 (759)
Q Consensus 291 ~l~-~~~~-~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~ll~~~~~~-----------~~~~~a~~~~~~~~~~~~~ 353 (759)
.++ ..|. +.+..++++++-.+.... +. ......|..+.-+|... ....++.+.+++..+.+..
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 222 3333 356666766666665542 10 11223333333333221 1234566667777665422
Q ss_pred CCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004362 354 PDEFTYCSLINGLCQDGDVDRAMAVYVKALEKGLKPSIVLYNTLIKGLSQQGLILQALQLMNEMSESGCCPDMWTYNIVI 433 (759)
Q Consensus 354 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 433 (759)
|+.+...+.--|+..++++.|.+..++..+.+..-+...|..|.-.+...+++.+|+.+.+.....- ..|......-+
T Consensus 477 -dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~ 554 (799)
T KOG4162|consen 477 -DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKI 554 (799)
T ss_pred -CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhh
Confidence 4444444455566677788888888888777666677778777777777788888887777665541 11221111122
Q ss_pred HHHHhcCChHHHHHHHHHHH
Q 004362 434 NGLCKMGCVSDANNLVNDAI 453 (759)
Q Consensus 434 ~~~~~~~~~~~a~~~~~~~~ 453 (759)
..-...++.+++......+.
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L 574 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKL 574 (799)
T ss_pred hhhhhcccHHHHHHHHHHHH
Confidence 22223555555555544443
No 54
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=5.1e-14 Score=138.57 Aligned_cols=289 Identities=13% Similarity=0.069 Sum_probs=235.0
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHHHHH
Q 004362 371 DVDRAMAVYVKALEKGLKPSIVLYNTLIKGLSQQGLILQALQLMNEMSESGC--CPDMWTYNIVINGLCKMGCVSDANNL 448 (759)
Q Consensus 371 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~ 448 (759)
+..+|...|..+...... .......+..+|...+++++|.++|+.+.+... .-+..+|.+.+..+- +.-+.-.+
T Consensus 334 ~~~~A~~~~~klp~h~~n-t~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq---~~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYN-TGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQ---DEVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHH---hhHHHHHH
Confidence 467889999886555333 446677888999999999999999999887521 125567776665432 22222233
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 004362 449 VNDAISKGYIPDIFTFNTLIDGYCKQLKMEIAIEILNTMWSHGVTP-DVITYNSLLNGLCKAAKSEDVMETFKTMIEKRC 527 (759)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 527 (759)
-++++... +..+.+|.++..+|.-+++.+.|++.|++.++. .| ...+|+.+..-+.....+|.|...|+..+...
T Consensus 410 aq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~- 485 (638)
T KOG1126|consen 410 AQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD- 485 (638)
T ss_pred HHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-
Confidence 34444443 557899999999999999999999999999986 45 67788888888888999999999999988653
Q ss_pred CCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHH
Q 004362 528 VPNIITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNI 607 (759)
Q Consensus 528 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 607 (759)
+-+-..|..++..|.+.++++.|.-.|+.+.+.+ |.+......+...+.+.|+.++|+++|+++... .|.++..-..
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l--d~kn~l~~~~ 562 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL--DPKNPLCKYH 562 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc--CCCCchhHHH
Confidence 2245577888999999999999999999999863 456677778888999999999999999999998 8899999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH
Q 004362 608 MINAFSEKLNFYMAEKLFYEMSEKGCPPD-NYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSLST 674 (759)
Q Consensus 608 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 674 (759)
.+..+...+++++|+..++++.+. .|+ ...+..++..|.+.|+.+.|+.-|.-|.+ ++|....
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~--ldpkg~~ 626 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALD--LDPKGAQ 626 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhc--CCCccch
Confidence 999999999999999999999965 565 78888899999999999999999999998 8886554
No 55
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.64 E-value=1.9e-10 Score=118.39 Aligned_cols=666 Identities=10% Similarity=-0.002 Sum_probs=353.8
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcC
Q 004362 46 MIDKLGFHGNFEEMENLLLEMRMDVDDSLLEGVHIGVMRNYGRRGKVQEAVDVFERMDFYNCEPTVLSYNTIMNILVEYG 125 (759)
Q Consensus 46 l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 125 (759)
.+.+|.+. +...|.+.|-++...++. -.++|..|+..|...-+...|.++|+++-+.+ ..+..++......|++..
T Consensus 465 ~a~~~~rK-~~~~al~ali~alrld~~--~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~ 540 (1238)
T KOG1127|consen 465 VALGCMRK-NSALALHALIRALRLDVS--LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEES 540 (1238)
T ss_pred HHHHHhhh-hHHHHHHHHHHHHhcccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccc
Confidence 44444443 488889999999988888 88999999999998889999999999998765 567888999999999999
Q ss_pred ChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHccCChhhHHHHHhhchhCCCCCCHHhHHHHHHHHHhcCChhHHHHHH
Q 004362 126 YFSQVHKVYMRMRNKG-IVPDVYTFVIRIKSFCRTRRPHVALRLLKNMPSQGFEPNAVAYCTLIAGFYEENHNVEAYELF 204 (759)
Q Consensus 126 ~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 204 (759)
+++.|..+.-...+.. ...-...|..+.-.|...++...|...|+...+.+ |.|...|..+..+|..+|++..|+++|
T Consensus 541 ~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF 619 (1238)
T KOG1127|consen 541 TWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVF 619 (1238)
T ss_pred cHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhh
Confidence 9999999855444322 01123344555666788899999999999999887 778999999999999999999999999
Q ss_pred HHHHhCCCCCChhhHHHH--HHHHHhcCChhHHHHHHHHHhhCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHH-
Q 004362 205 DEMLGMGISPDIATFNKL--IHTLCKKGNVRESEKLFNKVLKRG------VSPNLFTFNMFIQGLCRKGAISEAISLLD- 275 (759)
Q Consensus 205 ~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~- 275 (759)
.+.... .|+. +|... ....+..|.+.++...+..++..- ...-..++..+...+...|-..++...++
T Consensus 620 ~kAs~L--rP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~ek 696 (1238)
T KOG1127|consen 620 TKASLL--RPLS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEK 696 (1238)
T ss_pred hhhHhc--CcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 998765 4433 23322 233456799999999988876531 11111222223333333333333333333
Q ss_pred ------HHhhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHHcCCh---h---HHHHH
Q 004362 276 ------SLGREDLTPDVVTYNTLMCGLCKNSKVVEAEYYLHKMVNEGLEPDGFSYNAVIDGYCKAGMI---S---SADKI 343 (759)
Q Consensus 276 ------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~---~---~a~~~ 343 (759)
-........+...|-.+.++|. +|.... .+ .|+......+..-....+.. + .+.+.
T Consensus 697 sie~f~~~l~h~~~~~~~~Wi~asdac~----------~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c 764 (1238)
T KOG1127|consen 697 SIESFIVSLIHSLQSDRLQWIVASDACY----------IFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYEC 764 (1238)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHhHHHH----------HHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHH
Confidence 3332222223333333332221 111111 00 11111111111111111111 1 01111
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHh--------cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 004362 344 LNDAIFKGFVPDEFTYCSLINGLCQ--------DGDVDRAMAVYVKALEKGLKPSIVLYNTLIKGLSQQGLILQALQLMN 415 (759)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~l~~~~~~--------~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 415 (759)
+-...+ ...+..+|..++..|.+ ..+...|+.++.+.++..-. +...|+.|.-. ...|++.-+..-|-
T Consensus 765 ~~~hls--l~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~an-n~~~WnaLGVl-sg~gnva~aQHCfI 840 (1238)
T KOG1127|consen 765 GIAHLS--LAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCAN-NEGLWNALGVL-SGIGNVACAQHCFI 840 (1238)
T ss_pred hhHHHH--HhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhc-cHHHHHHHHHh-hccchhhhhhhhhh
Confidence 111111 11234444444443333 11234567777776665433 56667666554 44466666666555
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH--HH--HCC
Q 004362 416 EMSESGCCPDMWTYNIVINGLCKMGCVSDANNLVNDAISKGYIPDIFTFNTLIDGYCKQLKMEIAIEILNT--MW--SHG 491 (759)
Q Consensus 416 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~--~~--~~~ 491 (759)
+-.... +-+..+|..+...+....+++.|...|....... +.+...|-.........|+.-++..+|.- .. ..|
T Consensus 841 ks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~g 918 (1238)
T KOG1127|consen 841 KSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEG 918 (1238)
T ss_pred hhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhcccc
Confidence 444432 2345566666666777777777777777766552 22344443333334455666666666554 11 112
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---------cCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHC--
Q 004362 492 VTPDVITYNSLLNGLCKAAKSEDVMETFKTMIE---------KRCVPNIITYSILGESLCKAHKITEAFNLLEEMENK-- 560 (759)
Q Consensus 492 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-- 560 (759)
--|+..-|..........|+.++-+...+.+-. .+.+.....|...+......+.+..|.+...+.+..
T Consensus 919 ka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe 998 (1238)
T KOG1127|consen 919 KAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLE 998 (1238)
T ss_pred ccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233433343333334455555544333322211 123334556666666666666666666665554421
Q ss_pred ---CCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCC
Q 004362 561 ---GLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKG-CPPD 636 (759)
Q Consensus 561 ---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~ 636 (759)
....+...-..+.+.++..|.++.|...+...... . +..+.. ..-...-.|+++++.+.|+++..-. -..|
T Consensus 999 ~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~e--v--dEdi~g-t~l~lFfkndf~~sl~~fe~aLsis~se~d 1073 (1238)
T KOG1127|consen 999 LKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWME--V--DEDIRG-TDLTLFFKNDFFSSLEFFEQALSISNSESD 1073 (1238)
T ss_pred HHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchh--H--HHHHhh-hhHHHHHHhHHHHHHHHHHHHhhhcccccc
Confidence 11112222234445556666666655544333211 0 101100 0011133567777777777766321 1122
Q ss_pred -HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHH---hcCcHHHHHHHHHHHHH---CCCCCchH
Q 004362 637 -NYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIP-SLSTIGRVINCLC---VDHRVHEAVGFVHLMVQ---KGIVPEVV 708 (759)
Q Consensus 637 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~---~~~~p~~~ 708 (759)
......++.+....+..+.|...+-+... +.| +..+...+...+. ......-+.+-+.+... ....|...
T Consensus 1074 ~vvLl~kva~~~g~~~~k~~A~~lLfe~~~--ls~~~~~sll~L~A~~ild~da~~ssaileel~kl~k~e~~~~~~~ll 1151 (1238)
T KOG1127|consen 1074 KVVLLCKVAVCMGLARQKNDAQFLLFEVKS--LSKVQASSLLPLPAVYILDADAHGSSAILEELEKLLKLEWFCWPPGLL 1151 (1238)
T ss_pred hhhhhHHHHHHHhhcccchHHHHHHHHHHH--hCccchhhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhhHHhccChhHH
Confidence 22334444455566666777766666655 333 3333333322221 11112222222222211 11222233
Q ss_pred HHHHhccccccccchHHHHHHHhcCCCchHHHHHHH
Q 004362 709 NTIFEADKREVASPKIVVEDLLKKSHITYYAYELLF 744 (759)
Q Consensus 709 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 744 (759)
...+-...|+-.-.++.+++.+-..|-....|.+|.
T Consensus 1152 ~e~i~~~~~r~~~vk~~~qr~~h~~P~~~~~WslL~ 1187 (1238)
T KOG1127|consen 1152 KELIYALQGRSVAVKKQIQRAVHSNPGDPALWSLLS 1187 (1238)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 333334555555566667777777776666677666
No 56
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.64 E-value=6.1e-11 Score=120.50 Aligned_cols=654 Identities=15% Similarity=0.115 Sum_probs=344.2
Q ss_pred hhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcC-CCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCC
Q 004362 31 KREDGFKHTLLTYKYMIDKLGFHGNFEEMENLLLEMRMDV-DDSLLEGVHIGVMRNYGRRGKVQEAVDVFERMDFYNCEP 109 (759)
Q Consensus 31 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 109 (759)
.+..|..|+..+|..++.-|+..|+.+.|. +|..+.... |. +..++..+..+...+++.+.+. .|
T Consensus 16 ~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv--~e~vf~~lv~sh~~And~Enpk-----------ep 81 (1088)
T KOG4318|consen 16 HEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPV--REGVFRGLVASHKEANDAENPK-----------EP 81 (1088)
T ss_pred HHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccc--cchhHHHHHhcccccccccCCC-----------CC
Confidence 345688899999999999999999999998 888777666 44 7778999999988899887765 57
Q ss_pred CHHHHHHHHHHHHHcCChhH---HHHHHHHHHH----CCCC-CCHHHH-------------HHHHHHHHccCChhhHHHH
Q 004362 110 TVLSYNTIMNILVEYGYFSQ---VHKVYMRMRN----KGIV-PDVYTF-------------VIRIKSFCRTRRPHVALRL 168 (759)
Q Consensus 110 ~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~----~~~~-~~~~~~-------------~~l~~~~~~~~~~~~A~~~ 168 (759)
.+.+|+.+..+|...|+... +.+.+..... .|+- |....+ ...+......|-.+.+.++
T Consensus 82 ~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkl 161 (1088)
T KOG4318|consen 82 LADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKL 161 (1088)
T ss_pred chhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999998754 3332222221 1211 111111 1112222334455555666
Q ss_pred HhhchhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCC
Q 004362 169 LKNMPSQGFEPNAVAYCTLIAGFYEENHNVEAYELFDEMLGMGISPDIATFNKLIHTLCKKGNVRESEKLFNKVLKRGVS 248 (759)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 248 (759)
+..++...... +... .+.-+..... ...++........-.|++.+|..++....-.|+.+.|..++.+|.+.|++
T Consensus 162 l~~~Pvsa~~~-p~~v--fLrqnv~~nt--pvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfp 236 (1088)
T KOG4318|consen 162 LAKVPVSAWNA-PFQV--FLRQNVVDNT--PVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFP 236 (1088)
T ss_pred HhhCCcccccc-hHHH--HHHHhccCCc--hHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCC
Confidence 65555432111 1111 2333322222 22233322222111578889999999888999999999999999999988
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhcHHHHH
Q 004362 249 PNLFTFNMFIQGLCRKGAISEAISLLDSLGREDLTPDVVTYNTLMCGLCKNSKVVEAEYYLHKMVNEGLEPDGFSYNAVI 328 (759)
Q Consensus 249 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 328 (759)
.+...|..|+-+ .++...+..++..|...|+.|+..|+...+-.+..+|....+.. | .+....+.+-+
T Consensus 237 ir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e--------~-sq~~hg~tAav 304 (1088)
T KOG4318|consen 237 IRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEE--------G-SQLAHGFTAAV 304 (1088)
T ss_pred cccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhccc--------c-cchhhhhhHHH
Confidence 888877777655 77778888888888888999999998877776666555222211 1 11222222222
Q ss_pred HHHHHcCChhHHHHHHHH------------HHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CC-CCHHh
Q 004362 329 DGYCKAGMISSADKILND------------AIFKGFVPDEFTYCSLINGLCQDGDVDRAMAVYVKALEKG--LK-PSIVL 393 (759)
Q Consensus 329 ~~~~~~~~~~~a~~~~~~------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~-~~~~~ 393 (759)
..-+-.| ..|.+.++. ..-.|......+|...+. ...+|.-+...++-..+..-- .. .++..
T Consensus 305 rsaa~rg--~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a 381 (1088)
T KOG4318|consen 305 RSAACRG--LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDA 381 (1088)
T ss_pred HHHHhcc--cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHH
Confidence 2222223 112221111 111122222222222222 222455455555444443211 01 12233
Q ss_pred HHHHHHHHHhcC----------------------CHHHHHHHHHHHHhCCCCCCHH------------------------
Q 004362 394 YNTLIKGLSQQG----------------------LILQALQLMNEMSESGCCPDMW------------------------ 427 (759)
Q Consensus 394 ~~~l~~~~~~~~----------------------~~~~a~~~~~~~~~~~~~~~~~------------------------ 427 (759)
+..++.-|.+.- ......++.... .||..
T Consensus 382 ~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~l-----rkns~lr~lv~Lss~Eler~he~~~~~~h 456 (1088)
T KOG4318|consen 382 FGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENL-----RKNSFLRQLVGLSSTELERSHEPWPLIAH 456 (1088)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHh-----CcchHHHHHhhhhHHHHhcccccchhhhh
Confidence 333333333211 111111111111 12211
Q ss_pred ----HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHH
Q 004362 428 ----TYNIVINGLCKMGCVSDANNLVNDAISKGYIPDIFTFNTLIDGYCKQLKMEIAIEILNTMWSH--GVTPDVITYNS 501 (759)
Q Consensus 428 ----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~ 501 (759)
.-+.++-.|++.-+..+++..-+.....- -...|..|+..+......+.|.....+.... .+..|..-+..
T Consensus 457 ~irdi~~ql~l~l~se~n~lK~l~~~ekye~~l---f~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~ 533 (1088)
T KOG4318|consen 457 LIRDIANQLHLTLNSEYNKLKILCDEEKYEDLL---FAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTS 533 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHH
Confidence 11112222332222333332222222111 1245667777777777777777777766532 12234445666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCC-CC-ChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHcc
Q 004362 502 LLNGLCKAAKSEDVMETFKTMIEKRC-VP-NIITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNS 579 (759)
Q Consensus 502 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 579 (759)
+.+...+.+...++..+++++.+.-. .| ...++..+.......|+.+...++++-+...|+..+ ..++....+.
T Consensus 534 l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrk 609 (1088)
T KOG4318|consen 534 LQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLRK 609 (1088)
T ss_pred HHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeec
Confidence 77777777777777777777766411 11 133455566666777777777777777776655432 2333444556
Q ss_pred CChhhHHHHHHHHHHccCCCCchhhHHHHHHH---------------------HHhcCCHHHHHHHHHHH---HHcC---
Q 004362 580 GDLDGAYQLFRRMEDQYKISHTTATYNIMINA---------------------FSEKLNFYMAEKLFYEM---SEKG--- 632 (759)
Q Consensus 580 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~---------------------~~~~g~~~~A~~~~~~~---~~~~--- 632 (759)
++...|.+.++.....+ .+.+.....+-++ |.+.|++.+|-.+.+.= .+.+
T Consensus 610 dd~s~a~ea~e~~~qky--k~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~etpG~r~r~~RDr 687 (1088)
T KOG4318|consen 610 DDQSAAQEAPEPEEQKY--KPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITETPGVRCRNGRDR 687 (1088)
T ss_pred cchhhhhhcchHHHHHh--cCChHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhcccccchhhccccCcccccCCCcc
Confidence 66666666666655542 2222222222222 23334443333333210 0000
Q ss_pred ------CCC-C--------HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CcHHHHHHH
Q 004362 633 ------CPP-D--------NYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSLSTIGRVINCLCVD---HRVHEAVGF 694 (759)
Q Consensus 633 ------~~p-~--------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~---g~~~~A~~~ 694 (759)
+.| . .....-|+..|.+.|+++.|..+|.++. +.|+..+...+...+.+. -+..++..-
T Consensus 688 ~~de~e~~~lEll~elt~~lg~~dRLL~sy~~~g~~erA~glwnK~Q---V~k~~~~l~~LAsIlr~~n~evdvPe~q~e 764 (1088)
T KOG4318|consen 688 DTDEGEIVPLELLLELTHELGKNDRLLQSYLEEGRIERASGLWNKDQ---VSKSPMKLFHLASILRRMNEEVDVPEIQAE 764 (1088)
T ss_pred ccccCccccHHHHHHHHhHhHHHHHHHHHHHhhhHHHHHHhHHhhCc---CCcchHHHHHHHHHHHhhchhccchhHHHH
Confidence 000 0 0012235567777788888888777765 456666666666666322 245555555
Q ss_pred HHHHHHCC-CCCchHHH-----HHhccccccccchHHHHHHHhcCCC
Q 004362 695 VHLMVQKG-IVPEVVNT-----IFEADKREVASPKIVVEDLLKKSHI 735 (759)
Q Consensus 695 ~~~~~~~~-~~p~~~~~-----~~~~~~~~~~~a~~~~~~~~~~~~~ 735 (759)
.++..... ..|..-+. .+.......+-|+.++++..+..++
T Consensus 765 ~ekas~~~~~f~ttt~~~~~~a~~a~q~~qkkaAkk~f~r~eeq~~v 811 (1088)
T KOG4318|consen 765 TEKASELRTLFPTTTCYYEGYAFFATQTEQKKAAKKCFERLEEQLTV 811 (1088)
T ss_pred HHHHHhcccccccchHhhhhhHHHHhhHHHHHHHHHHHHHHHHccCC
Confidence 55554421 12221111 1112333445677777777776444
No 57
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.63 E-value=8.1e-11 Score=106.75 Aligned_cols=472 Identities=12% Similarity=0.052 Sum_probs=251.0
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004362 190 GFYEENHNVEAYELFDEMLGMGISPDIATFNKLIHTLCKKGNVRESEKLFNKVLKRGVSPNLFTFNMFIQGLCRKGAISE 269 (759)
Q Consensus 190 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 269 (759)
-+....++..|+.+++.-...+-.-...+-.-+...+.+.|++++|...+..+... -.++...+..|..++.-.|.+.+
T Consensus 31 dfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHHHHH
Confidence 34445566666666555443321111112222234445666666666666666553 23344445455555555666666
Q ss_pred HHHHHHHHhhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHHcCChhHHHHHHHHHHh
Q 004362 270 AISLLDSLGREDLTPDVVTYNTLMCGLCKNSKVVEAEYYLHKMVNEGLEPDGFSYNAVIDGYCKAGMISSADKILNDAIF 349 (759)
Q Consensus 270 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 349 (759)
|..+-... +.++..-..|...-.+.++-++-..+-+.+.+. ..--.++.........+.+|++++.+++.
T Consensus 110 A~~~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~ 179 (557)
T KOG3785|consen 110 AKSIAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQ 179 (557)
T ss_pred HHHHHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66655443 222223333334444555555554444444321 11112233333344456777777777665
Q ss_pred CCCCCCcccHH-HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 004362 350 KGFVPDEFTYC-SLINGLCQDGDVDRAMAVYVKALEKGLKPSIVLYNTLIKGLSQQGLILQALQLMNEMSESGCCPDMWT 428 (759)
Q Consensus 350 ~~~~~~~~~~~-~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 428 (759)
.+ |+-...+ .+.-+|.+..-++-+.++++-.+..-+. ++...|.......+.=+-..|..-...+...+...
T Consensus 180 dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pd-StiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~---- 252 (557)
T KOG3785|consen 180 DN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPD-STIAKNLKACNLFRLINGRTAEDEKKELADNIDQE---- 252 (557)
T ss_pred cC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCC-cHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----
Confidence 42 2222222 2334555666666666666665554222 44444544443333322233334444444332111
Q ss_pred HHHHHHHHHh-----cCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004362 429 YNIVINGLCK-----MGCVSDANNLVNDAISKGYIPDIFTFNTLIDGYCKQLKMEIAIEILNTMWSHGVTPDVITYNSLL 503 (759)
Q Consensus 429 ~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 503 (759)
|- .+.-.++ ..+-+.|++++--+.+. .| ..-..|+-.|.++++..+|..+.+++.-. ++.-|-.-.
T Consensus 253 ~~-f~~~l~rHNLVvFrngEgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~Pt----tP~EyilKg 323 (557)
T KOG3785|consen 253 YP-FIEYLCRHNLVVFRNGEGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLDPT----TPYEYILKG 323 (557)
T ss_pred ch-hHHHHHHcCeEEEeCCccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcCCC----ChHHHHHHH
Confidence 11 1112222 23445666666655543 22 22334555677888888888777665421 222222222
Q ss_pred HHHHhcCC-------HHHHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHH
Q 004362 504 NGLCKAAK-------SEDVMETFKTMIEKRCVP-NIITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLING 575 (759)
Q Consensus 504 ~~~~~~~~-------~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 575 (759)
..++..|+ ..-|.+.|+-.-..+..- +..--..+...+.-..++++.+..++.+... +..|......++.+
T Consensus 324 vv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQA 402 (557)
T KOG3785|consen 324 VVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQA 402 (557)
T ss_pred HHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHH
Confidence 22333332 334455554443333222 2334456666667777888888888888776 33344444567788
Q ss_pred HHccCChhhHHHHHHHHHHccCCCCchhhH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHH-HHHHHhcCCh
Q 004362 576 FCNSGDLDGAYQLFRRMEDQYKISHTTATY-NIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIM-IDSFCKTGGI 653 (759)
Q Consensus 576 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l-~~~~~~~g~~ 653 (759)
++..|++.+|.++|-++... .-.+..+| ..++++|.+.|..+-|+.++-++. -+.+..+...+ ..-|.+.+.+
T Consensus 403 k~atgny~eaEelf~~is~~--~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eF 477 (557)
T KOG3785|consen 403 KLATGNYVEAEELFIRISGP--EIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKANEF 477 (557)
T ss_pred HHHhcChHHHHHHHhhhcCh--hhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHH
Confidence 88999999999999777543 22244444 456789999999999988876653 23344444444 4688899998
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCC
Q 004362 654 NSGYCLLLENIDKGFIPSLSTIGRVINCLCVDHRVHEAVGFVHLMVQKGIVP 705 (759)
Q Consensus 654 ~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 705 (759)
=-|-+.|..+-. ++|+++.|. |+...-..+|+.+....-+|
T Consensus 478 yyaaKAFd~lE~--lDP~pEnWe---------GKRGACaG~f~~l~~~~~~~ 518 (557)
T KOG3785|consen 478 YYAAKAFDELEI--LDPTPENWE---------GKRGACAGLFRQLANHKTDP 518 (557)
T ss_pred HHHHHhhhHHHc--cCCCccccC---------CccchHHHHHHHHHcCCCCC
Confidence 888888888877 788877663 34444445565555433333
No 58
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.63 E-value=1.7e-12 Score=116.16 Aligned_cols=304 Identities=15% Similarity=0.096 Sum_probs=198.1
Q ss_pred CCCHHHHHHHH-hcCCChHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCccH--HHHH
Q 004362 4 SVLPKHVAAVV-KHQKNPLTALEMFNSVKREDGFKHTLLTYKYMIDKLGFHGNFEEMENLLLEMRMDVDDSLLE--GVHI 80 (759)
Q Consensus 4 ~l~~~~~~~~l-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~ 80 (759)
.|+..-+..+. .....+++|++.|-.+.+.++ ....+-..+++.+-+.|..+.|+.+++.+..+..-+... -+..
T Consensus 34 ~lsr~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~--~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~ 111 (389)
T COG2956 34 RLSRDYVKGLNFLLSNQPDKAVDLFLEMLQEDP--ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQ 111 (389)
T ss_pred hccHHHHhHHHHHhhcCcchHHHHHHHHHhcCc--hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 34444455553 245677888888888776532 234455567777778888888888888777665332222 2455
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHH
Q 004362 81 GVMRNYGRRGKVQEAVDVFERMDFYNCEPTVLSYNTIMNILVEYGYFSQVHKVYMRMRNKGIVPDV----YTFVIRIKSF 156 (759)
Q Consensus 81 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~ 156 (759)
.+++-|...|-+|.|..+|..+.+.+ .--..+...++.+|-..++|++|+++-+++.+.+-.+.. ..|.-+...+
T Consensus 112 qL~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~ 190 (389)
T COG2956 112 QLGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQA 190 (389)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHH
Confidence 67888888888888888888777533 334456777888888888888888888888776543331 2244445555
Q ss_pred HccCChhhHHHHHhhchhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHH
Q 004362 157 CRTRRPHVALRLLKNMPSQGFEPNAVAYCTLIAGFYEENHNVEAYELFDEMLGMGISPDIATFNKLIHTLCKKGNVRESE 236 (759)
Q Consensus 157 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 236 (759)
....+.+.|..++.+..+.+ +..+.+--.+.......|+++.|++.++.+.+.++.--+.+...|..+|.+.|+.++..
T Consensus 191 ~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~ 269 (389)
T COG2956 191 LASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGL 269 (389)
T ss_pred hhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 55677777888888777765 44445555566677778888888888888877654444556677778888888888888
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHh---CCChHHHHHHHHHHH
Q 004362 237 KLFNKVLKRGVSPNLFTFNMFIQGLCRKGAISEAISLLDSLGREDLTPDVVTYNTLMCGLCK---NSKVVEAEYYLHKMV 313 (759)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~ 313 (759)
..+..+.+... ....-..+........-.+.|...+.+-... .|+...+..++..... .|...+.+..+++|.
T Consensus 270 ~fL~~~~~~~~--g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 270 NFLRRAMETNT--GADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred HHHHHHHHccC--CccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence 88877776533 3333344444444444555666555554444 6777777777766543 344566666666665
Q ss_pred HC
Q 004362 314 NE 315 (759)
Q Consensus 314 ~~ 315 (759)
..
T Consensus 346 ge 347 (389)
T COG2956 346 GE 347 (389)
T ss_pred HH
Confidence 43
No 59
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.63 E-value=1.4e-09 Score=107.22 Aligned_cols=467 Identities=14% Similarity=0.139 Sum_probs=293.4
Q ss_pred CCHHHHHH---HHh--cCCChHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCccHHHH
Q 004362 5 VLPKHVAA---VVK--HQKNPLTALEMFNSVKREDGFKHTLLTYKYMIDKLGFHGNFEEMENLLLEMRMDVDDSLLEGVH 79 (759)
Q Consensus 5 l~~~~~~~---~l~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 79 (759)
|+|.+.+- ++. ..+.+...+++-+.+++..+-.+ .+....+-.|...|+-++|..........++. +...|
T Consensus 3 l~~KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHg--eslAmkGL~L~~lg~~~ea~~~vr~glr~d~~--S~vCw 78 (700)
T KOG1156|consen 3 LSPKENALFRRALKCYETKQYKKGLKLIKQILKKFPEHG--ESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK--SHVCW 78 (700)
T ss_pred CChHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccc--hhHHhccchhhcccchHHHHHHHHHHhccCcc--cchhH
Confidence 66766443 333 45788999999999888655444 44455566677889999999999999988877 78899
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 004362 80 IGVMRNYGRRGKVQEAVDVFERMDFYNCEPTVLSYNTIMNILVEYGYFSQVHKVYMRMRNKGIVPDVYTFVIRIKSFCRT 159 (759)
Q Consensus 80 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 159 (759)
+.++-.+....++++|+++|..+...+ +.|...|.-+.-.-.+.|+++..........+.. +.....|..+..++.-.
T Consensus 79 Hv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~ 156 (700)
T KOG1156|consen 79 HVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLL 156 (700)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHH
Confidence 999999999999999999999998665 5666777777666778888988888888888753 22355688888888899
Q ss_pred CChhhHHHHHhhchhCC-CCCCHHhHHHHHH------HHHhcCChhHHHHHHHHHHhCCCCCChhhH-HHHHHHHHhcCC
Q 004362 160 RRPHVALRLLKNMPSQG-FEPNAVAYCTLIA------GFYEENHNVEAYELFDEMLGMGISPDIATF-NKLIHTLCKKGN 231 (759)
Q Consensus 160 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~ 231 (759)
|++..|..++++..+.. -.|+...+.-... .....|.++.|.+.+..-... ..|-..+ ..-...+.+.++
T Consensus 157 g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~ 234 (700)
T KOG1156|consen 157 GEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQ 234 (700)
T ss_pred HHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhh
Confidence 99999999999887763 2466655544333 345567777777766654332 1232222 334567788999
Q ss_pred hhHHHHHHHHHhhCCCCCCHHHHH-HHHHHHHhcCCHHHHH-HHHHHHhhCCCCCCcch-HHHHHHHHHhCCChHHHHHH
Q 004362 232 VRESEKLFNKVLKRGVSPNLFTFN-MFIQGLCRKGAISEAI-SLLDSLGREDLTPDVVT-YNTLMCGLCKNSKVVEAEYY 308 (759)
Q Consensus 232 ~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~ 308 (759)
+++|..++..++.. .||...|. .+..++.+.-+.-++. .+|...... .|.... -..=+.......-.+....+
T Consensus 235 lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdky 310 (700)
T KOG1156|consen 235 LEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKY 310 (700)
T ss_pred HHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHH
Confidence 99999999999887 45555444 4445554333333333 566655433 221111 11111222122233445556
Q ss_pred HHHHHHCCCCCChhcHHHHHHHHHHcCChhHHHHHHHHHHh----CC----------CCCCcccH--HHHHHHHHhcCCH
Q 004362 309 LHKMVNEGLEPDGFSYNAVIDGYCKAGMISSADKILNDAIF----KG----------FVPDEFTY--CSLINGLCQDGDV 372 (759)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~----------~~~~~~~~--~~l~~~~~~~~~~ 372 (759)
+..+.+.|+++ ++..+...|-.....+-..++...+.. .| -+|.+..| .-++..+-+.|++
T Consensus 311 L~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~ 387 (700)
T KOG1156|consen 311 LRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDY 387 (700)
T ss_pred HHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccH
Confidence 67777777665 333333333222222211222222111 11 13333333 3456677788888
Q ss_pred HHHHHHHHHHHHcCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 004362 373 DRAMAVYVKALEKGLKPS-IVLYNTLIKGLSQQGLILQALQLMNEMSESGCCPDMWTYNIVINGLCKMGCVSDANNLVND 451 (759)
Q Consensus 373 ~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 451 (759)
+.|..+++.++.. .|+ +..|-.=.+.+...|.+++|..++++..+.+ .+|...-.--..-..+.++.++|..+...
T Consensus 388 ~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~sk 464 (700)
T KOG1156|consen 388 EVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSK 464 (700)
T ss_pred HHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHH
Confidence 8888888888775 233 2234344567778888888888888888764 33544433445556678888888888887
Q ss_pred HHHCCCC--CC---H-hhHH--HHHHHHHhcCCHHHHHHHHHHHHH
Q 004362 452 AISKGYI--PD---I-FTFN--TLIDGYCKQLKMEIAIEILNTMWS 489 (759)
Q Consensus 452 ~~~~~~~--~~---~-~~~~--~l~~~~~~~~~~~~A~~~~~~~~~ 489 (759)
..+.|.. .+ . -+|- .-..+|.+.|++..|++=|..+.+
T Consensus 465 FTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 465 FTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred hhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 7766531 01 0 1111 123456677777777666655544
No 60
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.62 E-value=8.8e-11 Score=106.53 Aligned_cols=198 Identities=11% Similarity=0.098 Sum_probs=137.4
Q ss_pred HHHHhCCChHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCh
Q 004362 48 DKLGFHGNFEEMENLLLEMRMDVDDSLLEGVHIGVMRNYGRRGKVQEAVDVFERMDFYNCEPTVLSYNTIMNILVEYGYF 127 (759)
Q Consensus 48 ~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 127 (759)
.-+...+++..|+.+++.....+.. -..++-.+++.++.+.|++++|...+..+.... .++...+..+.-++.-.|.+
T Consensus 30 edfls~rDytGAislLefk~~~~~E-EE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDRE-EEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchh-hhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 3345778999999999887755533 123566788999999999999999999887644 56777788888888889999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHhhchhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 004362 128 SQVHKVYMRMRNKGIVPDVYTFVIRIKSFCRTRRPHVALRLLKNMPSQGFEPNAVAYCTLIAGFYEENHNVEAYELFDEM 207 (759)
Q Consensus 128 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 207 (759)
.+|..+-....+ ++-.-..+.+...+.++-++-..+.+.+... ..--.++.+.....-.+++|+++|.++
T Consensus 108 ~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 108 IEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 999888766543 3444455666667778777777666665432 344456666666666889999999999
Q ss_pred HhCCCCCChhhHHHHH-HHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 004362 208 LGMGISPDIATFNKLI-HTLCKKGNVRESEKLFNKVLKRGVSPNLFTFNMFIQG 260 (759)
Q Consensus 208 ~~~~~~~~~~~~~~l~-~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 260 (759)
+.. .|+-...+.-+ -.|.+..-++-+.+++.-.++. ++.++...|..+..
T Consensus 178 L~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn 228 (557)
T KOG3785|consen 178 LQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACN 228 (557)
T ss_pred Hhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHH
Confidence 876 34544455444 3455677777788888777765 33344444444433
No 61
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.61 E-value=9.7e-12 Score=115.21 Aligned_cols=286 Identities=14% Similarity=0.081 Sum_probs=174.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 004362 369 DGDVDRAMAVYVKALEKGLKPSIVLYNTLIKGLSQQGLILQALQLMNEMSESGCCPDMWTYNIVINGLCKMGCVSDANNL 448 (759)
Q Consensus 369 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 448 (759)
.|++..|++...+..+.+.. ....|..-..+--+.|+.+.+-.++.+.-+..-.++.....+..+.....|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 45555555555554444333 22333333444445555566655555555542233444444445555556666666655
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHH
Q 004362 449 VNDAISKGYIPDIFTFNTLIDGYCKQLKMEIAIEILNTMWSHGVTPDV-------ITYNSLLNGLCKAAKSEDVMETFKT 521 (759)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~ 521 (759)
..++.+.+ +..+........+|.+.|++.....++..+.+.+.-.+. .+|+.++.-....+..+.-...|+.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 55555543 334455555556666666666666666666665544332 2455555544444444554556666
Q ss_pred HHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCc
Q 004362 522 MIEKRCVPNIITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHT 601 (759)
Q Consensus 522 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 601 (759)
.... .+-++.....++.-+.+.|+.++|.++.++..+.+..+. ...+ -.+.+-++.+.-++..+...+. .|++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~-~~~l~~~d~~~l~k~~e~~l~~--h~~~ 327 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRL-IPRLRPGDPEPLIKAAEKWLKQ--HPED 327 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHH-HhhcCCCCchHHHHHHHHHHHh--CCCC
Confidence 5544 344566667777777888888888888888877655544 1222 2345667777777777777777 6777
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004362 602 TATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCLLLENID 665 (759)
Q Consensus 602 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 665 (759)
+..+.+++..|.+++.|.+|.+.|+...+. .|+..+|..++.++.+.|+..+|....++++.
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 777777888888888888888888777743 67777777788888888888877777777664
No 62
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.61 E-value=7.7e-09 Score=102.16 Aligned_cols=464 Identities=13% Similarity=0.087 Sum_probs=303.6
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 004362 42 TYKYMIDKLGFHGNFEEMENLLLEMRMDVDDSLLEGVHIGVMRNYGRRGKVQEAVDVFERMDFYNCEPTVLSYNTIMNIL 121 (759)
Q Consensus 42 ~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 121 (759)
.|..++..| ..+++..-.+..+.+++..|. ..+.....+-.+...|+-++|........... ..+.++|+.++-.+
T Consensus 10 lF~~~lk~y-E~kQYkkgLK~~~~iL~k~~e--HgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~ 85 (700)
T KOG1156|consen 10 LFRRALKCY-ETKQYKKGLKLIKQILKKFPE--HGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQ 85 (700)
T ss_pred HHHHHHHHH-HHHHHHhHHHHHHHHHHhCCc--cchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHH
Confidence 445555544 667888889999999998887 67778878888889999999999998877544 56778999999888
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHhhchhCCCCCCHHhHHHHHHHHHhcCChhHHH
Q 004362 122 VEYGYFSQVHKVYMRMRNKGIVPDVYTFVIRIKSFCRTRRPHVALRLLKNMPSQGFEPNAVAYCTLIAGFYEENHNVEAY 201 (759)
Q Consensus 122 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 201 (759)
-..+++++|+++|......+ +.|...+.-+.-.-++.|+++.....-.+..+.. +.....|...+.+..-.|++..|.
T Consensus 86 R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~ 163 (700)
T KOG1156|consen 86 RSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMAL 163 (700)
T ss_pred hhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999865 3467788877777788899988887777777654 455678899999999999999999
Q ss_pred HHHHHHHhCCC-CCChhhHHHHH------HHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004362 202 ELFDEMLGMGI-SPDIATFNKLI------HTLCKKGNVRESEKLFNKVLKRGVSPNLFTFNMFIQGLCRKGAISEAISLL 274 (759)
Q Consensus 202 ~~~~~~~~~~~-~~~~~~~~~l~------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 274 (759)
.+.++..+... .|+...+.... ....+.|.++.|.+.+...... +......-..-...+.+.+++++|..++
T Consensus 164 ~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y 242 (700)
T KOG1156|consen 164 EILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVY 242 (700)
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHH
Confidence 99999887642 45655544332 3445678888888887765443 2212223334556788999999999999
Q ss_pred HHHhhCCCCCCcchHHHHHHHHH-hCCChHHHH-HHHHHHHHCCCCCChhcHHHH-HHHHHHcCChhHHHHHHHHHHhCC
Q 004362 275 DSLGREDLTPDVVTYNTLMCGLC-KNSKVVEAE-YYLHKMVNEGLEPDGFSYNAV-IDGYCKAGMISSADKILNDAIFKG 351 (759)
Q Consensus 275 ~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~ 351 (759)
..+... .||...|......+. +-.+..++. .+|....+. .|....-..+ +....-..-.+....++....+.|
T Consensus 243 ~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg 318 (700)
T KOG1156|consen 243 RRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKG 318 (700)
T ss_pred HHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcC
Confidence 999877 677777666554443 343444444 566665543 1111111111 111111112233445556666666
Q ss_pred CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHH----cC----------CCCCHHhHH--HHHHHHHhcCCHHHHHHHHH
Q 004362 352 FVPDEFTYCSLINGLCQDGDVDRAMAVYVKALE----KG----------LKPSIVLYN--TLIKGLSQQGLILQALQLMN 415 (759)
Q Consensus 352 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~----------~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~ 415 (759)
+++ ++..+...|-.....+-..++.-.+.. .| -+|....|+ .++..|-..|+++.|...++
T Consensus 319 ~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId 395 (700)
T KOG1156|consen 319 VPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYID 395 (700)
T ss_pred CCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 543 333344333222111111111111111 00 134444443 45667778899999999999
Q ss_pred HHHhCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 004362 416 EMSESGCCPDMW-TYNIVINGLCKMGCVSDANNLVNDAISKGYIPDIFTFNTLIDGYCKQLKMEIAIEILNTMWSHGVTP 494 (759)
Q Consensus 416 ~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 494 (759)
..... .|+.+ .|..-.+.+...|+++.|..++++..+.. .+|...-.....-..+.++.++|.++.......|.
T Consensus 396 ~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~-- 470 (700)
T KOG1156|consen 396 LAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF-- 470 (700)
T ss_pred HHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--
Confidence 88875 45543 45555677888999999999999888764 44555555666677788899999998888877653
Q ss_pred CHH--------HHHHH--HHHHHhcCCHHHHHHHHHHHHH
Q 004362 495 DVI--------TYNSL--LNGLCKAAKSEDVMETFKTMIE 524 (759)
Q Consensus 495 ~~~--------~~~~l--~~~~~~~~~~~~a~~~~~~~~~ 524 (759)
+.. .|-.+ ..+|.+.|++..|++-|....+
T Consensus 471 ~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 471 GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 221 22222 3356666677777666655543
No 63
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.59 E-value=2.4e-09 Score=110.55 Aligned_cols=653 Identities=9% Similarity=-0.023 Sum_probs=340.6
Q ss_pred CChHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHH
Q 004362 18 KNPLTALEMFNSVKREDGFKHTLLTYKYMIDKLGFHGNFEEMENLLLEMRMDVDDSLLEGVHIGVMRNYGRRGKVQEAVD 97 (759)
Q Consensus 18 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 97 (759)
.+...|+..|=...+..+. -...|..++.+|...-+...|.+.|+.+...++. +..........|+...+++.|..
T Consensus 472 K~~~~al~ali~alrld~~--~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat--daeaaaa~adtyae~~~we~a~~ 547 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVS--LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT--DAEAAAASADTYAEESTWEEAFE 547 (1238)
T ss_pred hhHHHHHHHHHHHHhcccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch--hhhhHHHHHHHhhccccHHHHHH
Confidence 3467778877777766432 3457788999998888999999999999999987 88888999999999999999998
Q ss_pred HHHHhhhCCC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHhhchhCC
Q 004362 98 VFERMDFYNC-EPTVLSYNTIMNILVEYGYFSQVHKVYMRMRNKGIVPDVYTFVIRIKSFCRTRRPHVALRLLKNMPSQG 176 (759)
Q Consensus 98 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 176 (759)
+.-+..+... ..-...|..++-.|.+.+++..|+..|+...+.. +-|...|..++.+|...|++..|.++|.+....+
T Consensus 548 I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr 626 (1238)
T KOG1127|consen 548 ICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR 626 (1238)
T ss_pred HHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC
Confidence 8544432210 1112345556667888999999999999998865 3478899999999999999999999999887765
Q ss_pred CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC------CCCChhhHHHHHHHHHhcCChhHHHHHHHHHhh------
Q 004362 177 FEPNAVAYCTLIAGFYEENHNVEAYELFDEMLGMG------ISPDIATFNKLIHTLCKKGNVRESEKLFNKVLK------ 244 (759)
Q Consensus 177 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------ 244 (759)
|.+...---....-+..|.+.++++.+......- ...-..++..+...+...|-...+..+++..++
T Consensus 627 -P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l 705 (1238)
T KOG1127|consen 627 -PLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSL 705 (1238)
T ss_pred -cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 3333333334445567899999999888876431 111122333333334444444444444443332
Q ss_pred -CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhCCCh---H---HHHHHHHHHHHCCC
Q 004362 245 -RGVSPNLFTFNMFIQGLCRKGAISEAISLLDSLGREDLTPDVVTYNTLMCGLCKNSKV---V---EAEYYLHKMVNEGL 317 (759)
Q Consensus 245 -~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~---~a~~~~~~~~~~~~ 317 (759)
.....+...|..+-.+ ..+|-... .+ .|+......+..-.-..+.. + -+.+.+-.-.. .
T Consensus 706 ~h~~~~~~~~Wi~asda----------c~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l 771 (1238)
T KOG1127|consen 706 IHSLQSDRLQWIVASDA----------CYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--L 771 (1238)
T ss_pred HHhhhhhHHHHHHHhHH----------HHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--H
Confidence 2212233333322222 22222221 00 11111111111101111111 1 01111111111 1
Q ss_pred CCChhcHHHHHHHHHH------c--CChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 004362 318 EPDGFSYNAVIDGYCK------A--GMISSADKILNDAIFKGFVPDEFTYCSLINGLCQDGDVDRAMAVYVKALEKGLKP 389 (759)
Q Consensus 318 ~~~~~~~~~ll~~~~~------~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 389 (759)
..+..+|..++..|.+ . .+...|+..+...++.. ..+..+|+.|.-. ...|.+.-|.-+|-+.+...+.
T Consensus 772 ~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~- 848 (1238)
T KOG1127|consen 772 AIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPT- 848 (1238)
T ss_pred hhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcccc-
Confidence 1123444444444433 1 12234555555555432 1133444444433 5556666666666666655444
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH--H--CCCCCCHhhHH
Q 004362 390 SIVLYNTLIKGLSQQGLILQALQLMNEMSESGCCPDMWTYNIVINGLCKMGCVSDANNLVNDAI--S--KGYIPDIFTFN 465 (759)
Q Consensus 390 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~--~~~~~~~~~~~ 465 (759)
...+|..+...+.+..+++.|...|...+... +.|...|..........|+.-+...+|..-. . .|-.++..-|.
T Consensus 849 ~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~ 927 (1238)
T KOG1127|consen 849 CHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWL 927 (1238)
T ss_pred chhheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHH
Confidence 55666666666677777777777777666542 2244455444444445566666666655411 1 12223333333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC---------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCChhcHH
Q 004362 466 TLIDGYCKQLKMEIAIEILNTMWSH---------GVTPDVITYNSLLNGLCKAAKSEDVMETFKTMIEK-RCVPNIITYS 535 (759)
Q Consensus 466 ~l~~~~~~~~~~~~A~~~~~~~~~~---------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~ 535 (759)
.........|+.++-+...+++... +.+.+...|...+...-..+.+.+|.+...+++.. ...-+...++
T Consensus 928 c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqyn 1007 (1238)
T KOG1127|consen 928 CATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYN 1007 (1238)
T ss_pred HHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 3333344455544433333222211 23334556666666666666666666666554421 0011222222
Q ss_pred ----HHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCc-hhhHHHHHH
Q 004362 536 ----ILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHT-TATYNIMIN 610 (759)
Q Consensus 536 ----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~ 610 (759)
..+..+...|.++.|..-+..... ..+..+...-+.. .-.|+++++.+.|+++...-....+ ......++.
T Consensus 1008 vak~~~gRL~lslgefe~A~~a~~~~~~---evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~ 1083 (1238)
T KOG1127|consen 1008 VAKPDAGRLELSLGEFESAKKASWKEWM---EVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAV 1083 (1238)
T ss_pred hhhhhhhhhhhhhcchhhHhhhhcccch---hHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHH
Confidence 333444455555544433222111 1111111111111 2246777777777777655333323 233344455
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH--HHHHHHH-HhcCc
Q 004362 611 AFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSLSTI--GRVINCL-CVDHR 687 (759)
Q Consensus 611 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~--~~l~~~~-~~~g~ 687 (759)
+....+.-+.|..++-+..... +|+......|...+.-..+-.....+.++..+. +......+ -.+...+ .+.|+
T Consensus 1084 ~~g~~~~k~~A~~lLfe~~~ls-~~~~~sll~L~A~~ild~da~~ssaileel~kl-~k~e~~~~~~~ll~e~i~~~~~r 1161 (1238)
T KOG1127|consen 1084 CMGLARQKNDAQFLLFEVKSLS-KVQASSLLPLPAVYILDADAHGSSAILEELEKL-LKLEWFCWPPGLLKELIYALQGR 1161 (1238)
T ss_pred HHhhcccchHHHHHHHHHHHhC-ccchhhHHHHHHHHHHhhhhhhhHHHHHHHHHh-hhhHHhccChhHHHHHHHHHhhh
Confidence 5556666666666665555442 555555555555444444444444444444331 00011111 1222333 45666
Q ss_pred HHHHHHHHHHHHH
Q 004362 688 VHEAVGFVHLMVQ 700 (759)
Q Consensus 688 ~~~A~~~~~~~~~ 700 (759)
-.-..+++++..-
T Consensus 1162 ~~~vk~~~qr~~h 1174 (1238)
T KOG1127|consen 1162 SVAVKKQIQRAVH 1174 (1238)
T ss_pred hHHHHHHHHHHHh
Confidence 6666666766653
No 64
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.59 E-value=6.5e-11 Score=120.28 Aligned_cols=272 Identities=15% Similarity=0.170 Sum_probs=149.9
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHhhchhCCC
Q 004362 98 VFERMDFYNCEPTVLSYNTIMNILVEYGYFSQVHKVYMRMRNKGIVPDVYTFVIRIKSFCRTRRPHVALRLLKNMPSQGF 177 (759)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 177 (759)
++..+...|+.|+.++|..+|..|+..|+.+.|- +|.-|.-.+.+.+...++.++......++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 4455566777888888888888888888888777 7777776666667777788877777777666554
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHh-hCCCCCCHHHHHH
Q 004362 178 EPNAVAYCTLIAGFYEENHNVEAYELFDEMLGMGISPDIATFNKLIHTLCKKGNVRESEKLFNKVL-KRGVSPNLFTFNM 256 (759)
Q Consensus 178 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~~ 256 (759)
.|...+|..|...|...||... |+...+ ....+...+...|.-.....++..+. ..+.-||.. .
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n 144 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---N 144 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---H
Confidence 3667788888888888887655 222211 01122233333333333333332211 111222322 2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHh-CCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHHcC
Q 004362 257 FIQGLCRKGAISEAISLLDSLGREDLTPDVVTYNTLMCGLCK-NSKVVEAEYYLHKMVNEGLEPDGFSYNAVIDGYCKAG 335 (759)
Q Consensus 257 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 335 (759)
.+....-.|-++.+++++..++...... .....++-+.. +..+++-....+.... .|++.+|..++......|
T Consensus 145 ~illlv~eglwaqllkll~~~Pvsa~~~---p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag 218 (1088)
T KOG4318|consen 145 AILLLVLEGLWAQLLKLLAKVPVSAWNA---PFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAG 218 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCcccccc---hHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcC
Confidence 2333334455555555555544221000 00011222221 1222222222222222 456666666666666667
Q ss_pred ChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC
Q 004362 336 MISSADKILNDAIFKGFVPDEFTYCSLINGLCQDGDVDRAMAVYVKALEKGLKPSIVLYNTLIKGLSQQG 405 (759)
Q Consensus 336 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 405 (759)
+.+.|..++..|...|++.+..-|..|+.+ .++..-+..+++-|.+.|+.|+..|+...+-.+..+|
T Consensus 219 ~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~ 285 (1088)
T KOG4318|consen 219 DVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNG 285 (1088)
T ss_pred chhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcch
Confidence 777777777777766666666655555544 5566666666666666666666666666555555533
No 65
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.59 E-value=1e-11 Score=111.35 Aligned_cols=244 Identities=13% Similarity=0.136 Sum_probs=128.2
Q ss_pred CChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCCHH
Q 004362 440 GCVSDANNLVNDAISKGYIPDIFTFNTLIDGYCKQLKMEIAIEILNTMWSHGVTPDV------ITYNSLLNGLCKAAKSE 513 (759)
Q Consensus 440 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~ 513 (759)
++.++|...|-+|.+.. +.+..+.-+|.+.|.+.|..+.|+.+.+.+.+. ||. .....|..-|...|-+|
T Consensus 49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 44455555555554432 223333444555555555555555555555442 221 12233444455555555
Q ss_pred HHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccH----HHHHHHHHHHHccCChhhHHHHH
Q 004362 514 DVMETFKTMIEKRCVPNIITYSILGESLCKAHKITEAFNLLEEMENKGLTLDT----VAFGTLINGFCNSGDLDGAYQLF 589 (759)
Q Consensus 514 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~ 589 (759)
.|..+|..+.+.+ ..-......++..|-...+|++|+++-+++.+.+-.+.. ..|..+...+....+.+.|...+
T Consensus 125 RAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l 203 (389)
T COG2956 125 RAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELL 203 (389)
T ss_pred HHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 5555555555432 112334455555555566666666666555554322211 12344444555556666666666
Q ss_pred HHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HhhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 004362 590 RRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPD--NYTYRIMIDSFCKTGGINSGYCLLLENIDKG 667 (759)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 667 (759)
+++.+. .|....+-..+++++...|+++.|++.++...+. .|+ +.+...|..+|...|+.++++..+.++.+
T Consensus 204 ~kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ--n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~-- 277 (389)
T COG2956 204 KKALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQ--NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME-- 277 (389)
T ss_pred HHHHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHh--ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--
Confidence 666666 5556666666666666666777666666666655 344 45566666666667777777777666666
Q ss_pred CCCCHHHHHHHHHHHHhcCcHHHHHHH
Q 004362 668 FIPSLSTIGRVINCLCVDHRVHEAVGF 694 (759)
Q Consensus 668 ~~p~~~~~~~l~~~~~~~g~~~~A~~~ 694 (759)
..+.......+........-.+.|..+
T Consensus 278 ~~~g~~~~l~l~~lie~~~G~~~Aq~~ 304 (389)
T COG2956 278 TNTGADAELMLADLIELQEGIDAAQAY 304 (389)
T ss_pred ccCCccHHHHHHHHHHHhhChHHHHHH
Confidence 344444444444444333333344443
No 66
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.56 E-value=4.4e-11 Score=110.97 Aligned_cols=287 Identities=12% Similarity=-0.011 Sum_probs=232.5
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 004362 403 QQGLILQALQLMNEMSESGCCPDMWTYNIVINGLCKMGCVSDANNLVNDAISKGYIPDIFTFNTLIDGYCKQLKMEIAIE 482 (759)
Q Consensus 403 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 482 (759)
..|++.+|.+++.+..+.+-. ....|..-.++-...|+.+.+-.++.++.+....++....-.........|+++.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 369999999999998777543 3445666667778899999999999999887446667777788888999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh-------cHHHHHHHHHhcCCHHHHHHHHH
Q 004362 483 ILNTMWSHGVTPDVITYNSLLNGLCKAAKSEDVMETFKTMIEKRCVPNII-------TYSILGESLCKAHKITEAFNLLE 555 (759)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~ 555 (759)
-+.++...+. .+.........+|.+.|++.+...+...+.+.+.-.+.. ++..+++-....+..+.-...++
T Consensus 175 ~v~~ll~~~p-r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMTP-RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhCc-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 9999998753 367788889999999999999999999999987655544 45566666666666666677787
Q ss_pred HHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 004362 556 EMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPP 635 (759)
Q Consensus 556 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 635 (759)
...++ .+.++..-.+++.-+.++|+.++|.++.+...+....|. ....-....-++...-++..++-.+. .+.
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-----L~~~~~~l~~~d~~~l~k~~e~~l~~-h~~ 326 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-----LCRLIPRLRPGDPEPLIKAAEKWLKQ-HPE 326 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-----HHHHHhhcCCCCchHHHHHHHHHHHh-CCC
Confidence 77665 556777888899999999999999999999988743332 12222344567777777777777665 244
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 004362 636 DNYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSLSTIGRVINCLCVDHRVHEAVGFVHLMVQ 700 (759)
Q Consensus 636 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 700 (759)
++..+.+|+..|.+.+.|.+|..+|+.+++ ..|+..++..+..++.+.|+..+|...+++...
T Consensus 327 ~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 327 DPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred ChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 578999999999999999999999999999 889999999999999999999999999998764
No 67
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=9.9e-10 Score=102.02 Aligned_cols=271 Identities=10% Similarity=0.045 Sum_probs=182.7
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004362 423 CPDMWTYNIVINGLCKMGCVSDANNLVNDAISKGYIPDI-FTFNTLIDGYCKQLKMEIAIEILNTMWSHGVTPDVITYNS 501 (759)
Q Consensus 423 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 501 (759)
+-|......+...+...|+..+|...|+..... .|+. .......-.+.+.|+.+....+...+.... ......|-.
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV 305 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFV 305 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhh
Confidence 445556666777777777777777777766544 2221 122222233456677777666666665531 122333433
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCC
Q 004362 502 LLNGLCKAAKSEDVMETFKTMIEKRCVPNIITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGD 581 (759)
Q Consensus 502 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 581 (759)
-+......++++.|+.+-++.++.+ +-+...+..-+..+...|++++|.-.|+.+... -|-+..+|..++..|...|.
T Consensus 306 ~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L-ap~rL~~Y~GL~hsYLA~~~ 383 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQML-APYRLEIYRGLFHSYLAQKR 383 (564)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhc-chhhHHHHHHHHHHHHhhch
Confidence 3444455667777777777777654 225556666677777888888888888887765 34567788888888888888
Q ss_pred hhhHHHHHHHHHHccCCCCchhhHHHHH-HHHH-hcCCHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCChHHHHH
Q 004362 582 LDGAYQLFRRMEDQYKISHTTATYNIMI-NAFS-EKLNFYMAEKLFYEMSEKGCPPD-NYTYRIMIDSFCKTGGINSGYC 658 (759)
Q Consensus 582 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 658 (759)
+.+|.-+-...... .|.+..+...++ .++. ...--++|.+++++.+. +.|+ ....+.+...|...|.+++++.
T Consensus 384 ~kEA~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~ 459 (564)
T KOG1174|consen 384 FKEANALANWTIRL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIK 459 (564)
T ss_pred HHHHHHHHHHHHHH--hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHH
Confidence 88888877777776 566666666664 3333 33345778888887773 4677 6667777778888888888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCc
Q 004362 659 LLLENIDKGFIPSLSTIGRVINCLCVDHRVHEAVGFVHLMVQKGIVPE 706 (759)
Q Consensus 659 ~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 706 (759)
++++.+. ..||...-..+...+...+.+.+|.+.|..+++ ++|.
T Consensus 460 LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--~dP~ 503 (564)
T KOG1174|consen 460 LLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR--QDPK 503 (564)
T ss_pred HHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCcc
Confidence 8888887 677777777788888888888888888888877 5564
No 68
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=2.5e-09 Score=99.44 Aligned_cols=312 Identities=13% Similarity=-0.021 Sum_probs=226.1
Q ss_pred CCCcccHHHHHHHHHh--cCCHHHHHHHHHHHHH-cCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-H
Q 004362 353 VPDEFTYCSLINGLCQ--DGDVDRAMAVYVKALE-KGLKPSIVLYNTLIKGLSQQGLILQALQLMNEMSESGCCPDMW-T 428 (759)
Q Consensus 353 ~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~ 428 (759)
+|........+.+++. .++-..|...+-.+.. .-++.++.....+...+...|+.++|...|++.... .|+.. .
T Consensus 191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~ 268 (564)
T KOG1174|consen 191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEA 268 (564)
T ss_pred CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--Chhhhhh
Confidence 3333344444444433 3343444444333322 234557788888999999999999999999988765 23322 2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004362 429 YNIVINGLCKMGCVSDANNLVNDAISKGYIPDIFTFNTLIDGYCKQLKMEIAIEILNTMWSHGVTPDVITYNSLLNGLCK 508 (759)
Q Consensus 429 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 508 (759)
.....-.+.+.|+.+....+...+.... ..+...|..-+......++++.|+.+-++.++.+. .+...+-.-...+.+
T Consensus 269 MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~ 346 (564)
T KOG1174|consen 269 MDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIA 346 (564)
T ss_pred HHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHh
Confidence 2333344567888888888887776542 23344444444555677889999999988887532 244455555567788
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHH-HHHH-ccCChhhHH
Q 004362 509 AAKSEDVMETFKTMIEKRCVPNIITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLI-NGFC-NSGDLDGAY 586 (759)
Q Consensus 509 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~A~ 586 (759)
.|++++|.-.|+..+... +-+...|..++.+|...|++.+|...-+...+. ++.+..++..+. ..+. ...--++|.
T Consensus 347 ~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAK 424 (564)
T KOG1174|consen 347 LERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAK 424 (564)
T ss_pred ccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHH
Confidence 999999999999988753 346789999999999999999999888888775 555666554442 2222 223367899
Q ss_pred HHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 004362 587 QLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCLLLENIDK 666 (759)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 666 (759)
++++..... .|.-..+.+.++..+...|+...++.++++.+.. .||....+.|+..+...+.+++|...|..++.
T Consensus 425 kf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr- 499 (564)
T KOG1174|consen 425 KFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR- 499 (564)
T ss_pred HHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh-
Confidence 999999988 8888888999999999999999999999998854 79999999999999999999999999999999
Q ss_pred CCCCCHHHHH
Q 004362 667 GFIPSLSTIG 676 (759)
Q Consensus 667 g~~p~~~~~~ 676 (759)
++|++....
T Consensus 500 -~dP~~~~sl 508 (564)
T KOG1174|consen 500 -QDPKSKRTL 508 (564)
T ss_pred -cCccchHHH
Confidence 889866443
No 69
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.50 E-value=4e-12 Score=113.78 Aligned_cols=232 Identities=9% Similarity=0.032 Sum_probs=151.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhc
Q 004362 465 NTLIDGYCKQLKMEIAIEILNTMWSHGVTPDVITYNSLLNGLCKAAKSEDVMETFKTMIEKRCVPNIITYSILGESLCKA 544 (759)
Q Consensus 465 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 544 (759)
+.+..+|.+.|-+.+|.+.++..+.. .|-+.||..|-.+|.+..+++.|+.++.+-++. .+-+......+...+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 45666777777777777777766664 355566666777777777777777777776665 233444445556666667
Q ss_pred CCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHH
Q 004362 545 HKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKL 624 (759)
Q Consensus 545 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 624 (759)
++.++|.++|+...+. .+.+.+....+...|.-.++.+-|..+|+++...+ -.++..|++++-++...++++-++.-
T Consensus 304 ~~~~~a~~lYk~vlk~-~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG--~~speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKL-HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMG--AQSPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HhHHHHHHHHHHHHhc-CCccceeeeeeeeccccCCChHHHHHHHHHHHHhc--CCChHHHhhHHHHHHhhcchhhhHHH
Confidence 7777777777777765 34455555666666666677777777777777663 33566777777777777777777777
Q ss_pred HHHHHHcCCCCC--HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCcHHHHHHHHHHHHHC
Q 004362 625 FYEMSEKGCPPD--NYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSLSTIGRVINCL-CVDHRVHEAVGFVHLMVQK 701 (759)
Q Consensus 625 ~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~ 701 (759)
|++++...-.|+ ..+|..++......||+..|.+.|+-++. -+|+......-+..+ .+.|+.++|..+++.+..
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s- 457 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT--SDAQHGEALNNLAVLAARSGDILGARSLLNAAKS- 457 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc--cCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh-
Confidence 777665543344 45677777777777777777777777766 445544333333334 567777777777777665
Q ss_pred CCCCc
Q 004362 702 GIVPE 706 (759)
Q Consensus 702 ~~~p~ 706 (759)
+.|+
T Consensus 458 -~~P~ 461 (478)
T KOG1129|consen 458 -VMPD 461 (478)
T ss_pred -hCcc
Confidence 4454
No 70
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.49 E-value=2.6e-12 Score=114.93 Aligned_cols=231 Identities=8% Similarity=0.014 Sum_probs=201.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHc
Q 004362 499 YNSLLNGLCKAAKSEDVMETFKTMIEKRCVPNIITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCN 578 (759)
Q Consensus 499 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 578 (759)
-+.+..+|.+.|-+.+|.+.++..++. .|.+.||..+..+|.+..++..|..++.+.++. +|.+......+.+.+..
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence 367889999999999999999999886 577889999999999999999999999999987 67777777888999999
Q ss_pred cCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHH
Q 004362 579 SGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYC 658 (759)
Q Consensus 579 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 658 (759)
.++.++|.++|+.+.+. .|.+..+...++..|.-.++.+.|+.+|+++++.| ..++..|..++-+|.-.+.++-++.
T Consensus 303 m~~~~~a~~lYk~vlk~--~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKL--HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQSPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHhHHHHHHHHHHHHhc--CCccceeeeeeeeccccCCChHHHHHHHHHHHHhc-CCChHHHhhHHHHHHhhcchhhhHH
Confidence 99999999999999998 88899999999999999999999999999999988 4578899999999999999999999
Q ss_pred HHHHHHhCCCCCC--HHHHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCc---hH--HHHHhccccccccchHHHHHHHh
Q 004362 659 LLLENIDKGFIPS--LSTIGRVINCLCVDHRVHEAVGFVHLMVQKGIVPE---VV--NTIFEADKREVASPKIVVEDLLK 731 (759)
Q Consensus 659 ~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~--~~~~~~~~~~~~~a~~~~~~~~~ 731 (759)
.|++++.-.-.|+ ...|+.+.....-.|++.-|...|+-.+.. +|+ .. ..++.+..|+.++|+.+++.+..
T Consensus 380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~--d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS--DAQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhcc--CcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 9999987434454 567788887778899999999999998863 444 22 33556699999999999999988
Q ss_pred cCCCch
Q 004362 732 KSHITY 737 (759)
Q Consensus 732 ~~~~~~ 737 (759)
..|...
T Consensus 458 ~~P~m~ 463 (478)
T KOG1129|consen 458 VMPDMA 463 (478)
T ss_pred hCcccc
Confidence 776643
No 71
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.47 E-value=2.9e-11 Score=114.67 Aligned_cols=200 Identities=12% Similarity=0.047 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHH
Q 004362 496 VITYNSLLNGLCKAAKSEDVMETFKTMIEKRCVPNIITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLING 575 (759)
Q Consensus 496 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 575 (759)
...+..+...+...|++++|.+.+++..+.. +.+...+..++..+...|++++|...+++..+. .+.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTL-NPNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHH
Confidence 3444555555556666666666666655542 223445555566666666666666666666654 23344555566666
Q ss_pred HHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHH
Q 004362 576 FCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINS 655 (759)
Q Consensus 576 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 655 (759)
+...|++++|.+.++++......+.....+..++.++...|++++|...++++.+.. +.+...+..++..+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 666666777776666666543334445556666667777777777777777766542 2235566666667777777777
Q ss_pred HHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 004362 656 GYCLLLENIDKGFIPSL-STIGRVINCLCVDHRVHEAVGFVHLMVQ 700 (759)
Q Consensus 656 A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 700 (759)
|..+++++++ ..|+. ..+......+...|+.++|..+.+.+..
T Consensus 188 A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQ--TYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 7777777766 33432 3333333444566777777776666544
No 72
>PRK12370 invasion protein regulator; Provisional
Probab=99.46 E-value=3e-11 Score=127.96 Aligned_cols=216 Identities=15% Similarity=0.039 Sum_probs=109.2
Q ss_pred ChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004362 441 CVSDANNLVNDAISKGYIPDIFTFNTLIDGYCKQ---------LKMEIAIEILNTMWSHGVTPDVITYNSLLNGLCKAAK 511 (759)
Q Consensus 441 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 511 (759)
..++|...|++.++.. +.+...+..+..+|... +++++|...++++.+.+. .+...+..+..++...|+
T Consensus 276 ~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP-~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 276 SLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDH-NNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHccC
Confidence 3456666666666552 22334444444443321 225566666666655432 244555555555556666
Q ss_pred HHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHH
Q 004362 512 SEDVMETFKTMIEKRCVPNIITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRR 591 (759)
Q Consensus 512 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 591 (759)
+++|...|++.++.+ +.+...+..++.++...|++++|...++++.+.. |.+...+..++..+...|++++|+..+++
T Consensus 354 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-P~~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 354 YIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD-PTRAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 666666666665543 2234455555666666666666666666665542 11222222233334445566666666665
Q ss_pred HHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004362 592 MEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPD-NYTYRIMIDSFCKTGGINSGYCLLLENID 665 (759)
Q Consensus 592 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 665 (759)
+.... .|.++..+..++.++...|++++|...++++... .|+ ...++.+...|...| ++|...++++.+
T Consensus 432 ~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 432 LRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 55441 1334445555566666666666666666555432 333 333344444445445 355555555443
No 73
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.45 E-value=6.5e-11 Score=112.22 Aligned_cols=201 Identities=14% Similarity=0.103 Sum_probs=161.8
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHH
Q 004362 460 DIFTFNTLIDGYCKQLKMEIAIEILNTMWSHGVTPDVITYNSLLNGLCKAAKSEDVMETFKTMIEKRCVPNIITYSILGE 539 (759)
Q Consensus 460 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 539 (759)
....+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..++.
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 34566777788888888888888888887653 2356677778888888899999999888888764 335567777888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCC-CCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCH
Q 004362 540 SLCKAHKITEAFNLLEEMENKG-LTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNF 618 (759)
Q Consensus 540 ~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 618 (759)
.+...|++++|...++++.+.. .+.....+..+..++...|++++|...+++.... .|.+...+..++.++...|++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI--DPQRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCChHHHHHHHHHHHHcCCH
Confidence 8888999999999999988642 2334556777888899999999999999999887 677788889999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004362 619 YMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCLLLENID 665 (759)
Q Consensus 619 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 665 (759)
++|...++++.+. .+.+...+..++..+...|+.++|..+.+.+.+
T Consensus 186 ~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 186 KDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999998876 244567777788888899999999998888765
No 74
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.45 E-value=2.4e-07 Score=96.13 Aligned_cols=535 Identities=12% Similarity=0.103 Sum_probs=268.9
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCc-cHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 004362 42 TYKYMIDKLGFHGNFEEMENLLLEMRMDVDDSL-LEGVHIGVMRNYGRRGKVQEAVDVFERMDFYNCEPTVLSYNTIMNI 120 (759)
Q Consensus 42 ~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 120 (759)
-+..+++.|.++|-+.+|++.|..+...-.... +..+-..-...|+..-.++++.+++..|...++..|......+..-
T Consensus 608 Dra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatk 687 (1666)
T KOG0985|consen 608 DRAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATK 687 (1666)
T ss_pred cHHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 366788889999999999877765443320000 0111112344566677888999999999887777777766666666
Q ss_pred HHHcCChhHHHHHHHHHHHC-----------CCCCCHHHHHHHHHHHHccCChhhHHHHHhhchhC--------------
Q 004362 121 LVEYGYFSQVHKVYMRMRNK-----------GIVPDVYTFVIRIKSFCRTRRPHVALRLLKNMPSQ-------------- 175 (759)
Q Consensus 121 ~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------------- 175 (759)
|..+=-.+..+++|+....- ++..|+...-..|++.++.|++.+..++.++-.-.
T Consensus 688 y~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL 767 (1666)
T KOG0985|consen 688 YHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKL 767 (1666)
T ss_pred HHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccc
Confidence 66554456666666665431 24456666777888889999888877776543111
Q ss_pred -------------CCCCCHHhH------HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhh-------------HHHHH
Q 004362 176 -------------GFEPNAVAY------CTLIAGFYEENHNVEAYELFDEMLGMGISPDIAT-------------FNKLI 223 (759)
Q Consensus 176 -------------~~~~~~~~~------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------------~~~l~ 223 (759)
++.+|...| ...|..|.+.-++...-.+.-.++... -+... ..-|.
T Consensus 768 ~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~d--C~E~~ik~Li~~v~gq~~~deLv 845 (1666)
T KOG0985|consen 768 TDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVD--CSEDFIKNLILSVRGQFPVDELV 845 (1666)
T ss_pred cccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCC--CcHHHHHHHHHHHhccCChHHHH
Confidence 111222211 112333333333333222222222211 11111 11223
Q ss_pred HHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC-HHHHHH---HHH------HHhhCCC----------C
Q 004362 224 HTLCKKGNVRESEKLFNKVLKRGVSPNLFTFNMFIQGLCRKGA-ISEAIS---LLD------SLGREDL----------T 283 (759)
Q Consensus 224 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~---~~~------~~~~~~~----------~ 283 (759)
.-..+.++..--...++..+..|.. |..++|+|...|...++ ++.-++ .++ -..+++. .
T Consensus 846 ~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGq 924 (1666)
T KOG0985|consen 846 EEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQ 924 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccC
Confidence 3333445555556666677777765 78888888887775443 222111 011 1111100 0
Q ss_pred ---------CCcchHHHHHHHHHhCCChHHH-----------HHHHHHHHHCCCC--CChhcHHHHHHHHHHcCChhHHH
Q 004362 284 ---------PDVVTYNTLMCGLCKNSKVVEA-----------EYYLHKMVNEGLE--PDGFSYNAVIDGYCKAGMISSAD 341 (759)
Q Consensus 284 ---------~~~~~~~~l~~~~~~~~~~~~a-----------~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~ 341 (759)
-....|....+.+.+..+.+-- ..+.++....+++ .|+...+..+.++...+-..+-+
T Consensus 925 cD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLI 1004 (1666)
T KOG0985|consen 925 CDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELI 1004 (1666)
T ss_pred CcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHH
Confidence 0011233333444444443322 2344555544332 24555666778888888888888
Q ss_pred HHHHHHHhCC--CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004362 342 KILNDAIFKG--FVPDEFTYCSLINGLCQDGDVDRAMAVYVKALEKGLKPSIVLYNTLIKGLSQQGLILQALQLMNEMSE 419 (759)
Q Consensus 342 ~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 419 (759)
+++++++-.+ +..+...-+.|+-...+. +..+..++.+++..-+. |+ +.......+-+++|..+|+..-.
T Consensus 1005 ELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyDa-~~------ia~iai~~~LyEEAF~ifkkf~~ 1076 (1666)
T KOG0985|consen 1005 ELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYDA-PD------IAEIAIENQLYEEAFAIFKKFDM 1076 (1666)
T ss_pred HHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCCc-hh------HHHHHhhhhHHHHHHHHHHHhcc
Confidence 8888876432 122233344444444443 34455555555543311 11 22333445556677776665432
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 004362 420 SGCCPDMWTYNIVINGLCKMGCVSDANNLVNDAISKGYIPDIFTFNTLIDGYCKQLKMEIAIEILNTMWSHGVTPDVITY 499 (759)
Q Consensus 420 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 499 (759)
+......++. .-+..+.|.++-++.. .+.+|..+..+-.+.|...+|++.|-+.. |+..|
T Consensus 1077 -----n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAieSyikad------Dps~y 1136 (1666)
T KOG0985|consen 1077 -----NVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIESYIKAD------DPSNY 1136 (1666)
T ss_pred -----cHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHHHHhcC------CcHHH
Confidence 3333333332 2234444444433321 34455566665556666666555543322 44455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHcc
Q 004362 500 NSLLNGLCKAAKSEDVMETFKTMIEKRCVPNIITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNS 579 (759)
Q Consensus 500 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 579 (759)
..++....+.|++++-++++....++.-.|... ..++-+|++.++..+..+++ .-|+......+.+-|...
T Consensus 1137 ~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~ 1207 (1666)
T KOG0985|consen 1137 LEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEE 1207 (1666)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhh
Confidence 556666666666666666555555543333222 34555555555554433332 123444444455555555
Q ss_pred CChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHH
Q 004362 580 GDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFY 626 (759)
Q Consensus 580 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 626 (759)
|.++.|.-+|..+. .|..++..+...|.+..|..-.+
T Consensus 1208 ~~y~aAkl~y~~vS----------N~a~La~TLV~LgeyQ~AVD~aR 1244 (1666)
T KOG0985|consen 1208 KMYEAAKLLYSNVS----------NFAKLASTLVYLGEYQGAVDAAR 1244 (1666)
T ss_pred hhhHHHHHHHHHhh----------hHHHHHHHHHHHHHHHHHHHHhh
Confidence 55555544443322 23444444444444444444433
No 75
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.45 E-value=1.1e-07 Score=98.61 Aligned_cols=246 Identities=14% Similarity=0.166 Sum_probs=148.0
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHhhchhCCCCCCHHhHHHHHHHHHhcCCh
Q 004362 118 MNILVEYGYFSQVHKVYMRMRNKGIVPDVYTFVIRIKSFCRTRRPHVALRLLKNMPSQGFEPNAVAYCTLIAGFYEENHN 197 (759)
Q Consensus 118 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 197 (759)
+.+++..|+++++.-.. .+.|..||. ..+++...+ -.++.+.++...+.+.. +...-++.+...+...+..
T Consensus 488 i~cfAE~Gqf~KiilY~---kKvGyTPdy---mflLq~l~r-~sPD~~~qFa~~l~Q~~--~~~~die~I~DlFme~N~i 558 (1666)
T KOG0985|consen 488 IQCFAETGQFKKIILYA---KKVGYTPDY---MFLLQQLKR-SSPDQALQFAMMLVQDE--EPLADIEQIVDLFMELNLI 558 (1666)
T ss_pred HHHHHHhcchhHHHHHH---HHcCCCccH---HHHHHHHHc-cChhHHHHHHHHhhccC--CCcccHHHHHHHHHHHHhh
Confidence 44444444444443322 345666763 344554444 56788888777777654 3445566677777777777
Q ss_pred hHHHHHHHHHHhCCCCCChhhHH-HHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004362 198 VEAYELFDEMLGMGISPDIATFN-KLIHTLCKKGNVRESEKLFNKVLKRGVSPNLFTFNMFIQGLCRKGAISEAISLLDS 276 (759)
Q Consensus 198 ~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 276 (759)
+.+..++-..++.+ .|+..... .++..- -.+ |-++.+.++..+.. +..-+-.+.+.|.+.|-...|++.+.+
T Consensus 559 Qq~TSFLLdaLK~~-~Pd~g~LQTrLLE~N-L~~----aPqVADAILgN~mF-tHyDra~IAqLCEKAGL~qraLehytD 631 (1666)
T KOG0985|consen 559 QQCTSFLLDALKLN-SPDEGHLQTRLLEMN-LVH----APQVADAILGNDMF-THYDRAEIAQLCEKAGLLQRALEHYTD 631 (1666)
T ss_pred hhhHHHHHHHhcCC-ChhhhhHHHHHHHHH-hcc----chHHHHHHHhcccc-ccccHHHHHHHHHhcchHHHHHHhccc
Confidence 77777777776643 44543332 233221 112 23333344444333 222367788889999999999988777
Q ss_pred HhhCCCCCCcchH----HHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHHcCChhHHHHHHHHHHhC--
Q 004362 277 LGREDLTPDVVTY----NTLMCGLCKNSKVVEAEYYLHKMVNEGLEPDGFSYNAVIDGYCKAGMISSADKILNDAIFK-- 350 (759)
Q Consensus 277 ~~~~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-- 350 (759)
+... ....+.- --.+-.|...-.++.+.+.++.|...++..|..+...+..-|...=..+..+++|+.....
T Consensus 632 l~DI--KR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eG 709 (1666)
T KOG0985|consen 632 LYDI--KRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEG 709 (1666)
T ss_pred HHHH--HHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchh
Confidence 6432 1111110 1112334445577888999999998888777777666666666665566667777665432
Q ss_pred ---------CCCCCcccHHHHHHHHHhcCCHHHHHHHHHH
Q 004362 351 ---------GFVPDEFTYCSLINGLCQDGDVDRAMAVYVK 381 (759)
Q Consensus 351 ---------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 381 (759)
++..|+.+....|.+.++.|++.+..++-++
T Consensus 710 L~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicre 749 (1666)
T KOG0985|consen 710 LYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRE 749 (1666)
T ss_pred HHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhc
Confidence 3455777777888999999998888877654
No 76
>PRK12370 invasion protein regulator; Provisional
Probab=99.44 E-value=5.3e-11 Score=126.08 Aligned_cols=216 Identities=11% Similarity=0.026 Sum_probs=131.5
Q ss_pred ChHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHh---------cCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcC
Q 004362 55 NFEEMENLLLEMRMDVDDSLLEGVHIGVMRNYGR---------RGKVQEAVDVFERMDFYNCEPTVLSYNTIMNILVEYG 125 (759)
Q Consensus 55 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 125 (759)
.+++|...|+++...+|. +..++..++.+|.. .+++++|...++++.... +.+...+..+..++...|
T Consensus 276 ~~~~A~~~~~~Al~ldP~--~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPN--SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHhcCCc--cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 456777778887777777 66666666665542 233667777777776554 456666767777777777
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHhhchhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHH
Q 004362 126 YFSQVHKVYMRMRNKGIVPDVYTFVIRIKSFCRTRRPHVALRLLKNMPSQGFEPNAVAYCTLIAGFYEENHNVEAYELFD 205 (759)
Q Consensus 126 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 205 (759)
++++|...|++.++.+ +.+..++..+..++...|++++|...+++..+.+ |.+...+..++..+...|++++|+..++
T Consensus 353 ~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD-PTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 7777777777777654 2345566666777777777777777777776664 2233333334444555677777777777
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 004362 206 EMLGMGISPDIATFNKLIHTLCKKGNVRESEKLFNKVLKRGVSPNLFTFNMFIQGLCRKGAISEAISLLDSLG 278 (759)
Q Consensus 206 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 278 (759)
+......+-+...+..+..++...|++++|...+.++.... +.+....+.+...|+..| +.|...++.+.
T Consensus 431 ~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll 500 (553)
T PRK12370 431 ELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFL 500 (553)
T ss_pred HHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHH
Confidence 76654222233345555566667777777777776654431 112333444445555555 35555555544
No 77
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.39 E-value=2.2e-08 Score=102.15 Aligned_cols=289 Identities=18% Similarity=0.209 Sum_probs=149.6
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-----
Q 004362 191 FYEENHNVEAYELFDEMLGMGISPDI-ATFNKLIHTLCKKGNVRESEKLFNKVLKRGVSPNLFTFNMFIQGLCRK----- 264 (759)
Q Consensus 191 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 264 (759)
+...|++++|++.++.-.+. -+|. .........+.+.|+.++|..++..+++.++. +...|..+..+..-.
T Consensus 14 l~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhccccc
Confidence 34455555555555553332 2232 22333445555556666666666655555321 333333333333111
Q ss_pred CCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhCCCh-HHHHHHHHHHHHCCCCCChhcHHHHHHHHHHcCChhHHHHH
Q 004362 265 GAISEAISLLDSLGREDLTPDVVTYNTLMCGLCKNSKV-VEAEYYLHKMVNEGLEPDGFSYNAVIDGYCKAGMISSADKI 343 (759)
Q Consensus 265 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 343 (759)
.+.+...++++++... -|.......+.-.+.....+ ..+...+..+...|+++ +|..+-..|..........++
T Consensus 91 ~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 91 EDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred ccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHH
Confidence 1345555555555443 22222221111111111112 23344455555555443 344444444433344444444
Q ss_pred HHHHHhC----C----------CCCCcc--cHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCH
Q 004362 344 LNDAIFK----G----------FVPDEF--TYCSLINGLCQDGDVDRAMAVYVKALEKGLKPSIVLYNTLIKGLSQQGLI 407 (759)
Q Consensus 344 ~~~~~~~----~----------~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 407 (759)
+...... + -+|+.. ++..+...|...|++++|+.++++.++..+. .+..|..-.+.+-+.|++
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~~ 244 (517)
T PF12569_consen 166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGDL 244 (517)
T ss_pred HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCH
Confidence 4443321 0 112221 2344456666777777777777777776443 456666667777777777
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHh--------hHHHHHHHHHhcCCHHH
Q 004362 408 LQALQLMNEMSESGCCPDMWTYNIVINGLCKMGCVSDANNLVNDAISKGYIPDIF--------TFNTLIDGYCKQLKMEI 479 (759)
Q Consensus 408 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--------~~~~l~~~~~~~~~~~~ 479 (759)
.+|.+.++.....+.. |...-+-.+..+.+.|++++|..++....+.+..|... .......+|.+.|++..
T Consensus 245 ~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ 323 (517)
T PF12569_consen 245 KEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGL 323 (517)
T ss_pred HHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 7777777777776432 55555666666777777777777777766554322111 11334566777788877
Q ss_pred HHHHHHHHHH
Q 004362 480 AIEILNTMWS 489 (759)
Q Consensus 480 A~~~~~~~~~ 489 (759)
|++-|..+.+
T Consensus 324 ALk~~~~v~k 333 (517)
T PF12569_consen 324 ALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHH
Confidence 7777766654
No 78
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.39 E-value=3.1e-07 Score=92.11 Aligned_cols=216 Identities=12% Similarity=0.158 Sum_probs=145.0
Q ss_pred cCCChHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHH
Q 004362 16 HQKNPLTALEMFNSVKREDGFKHTLLTYKYMIDKLGFHGNFEEMENLLLEMRMDVDDSLLEGVHIGVMRNYGRRGKVQEA 95 (759)
Q Consensus 16 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 95 (759)
..|.++.|+..|-.+. .....+.+-..+..|..|+.+++.++.+... ...|..++.-|...|+++.|
T Consensus 718 ~~~q~daainhfiea~----------~~~kaieaai~akew~kai~ildniqdqk~~---s~yy~~iadhyan~~dfe~a 784 (1636)
T KOG3616|consen 718 QIGQLDAAINHFIEAN----------CLIKAIEAAIGAKEWKKAISILDNIQDQKTA---SGYYGEIADHYANKGDFEIA 784 (1636)
T ss_pred HHHhHHHHHHHHHHhh----------hHHHHHHHHhhhhhhhhhHhHHHHhhhhccc---cccchHHHHHhccchhHHHH
Confidence 4566666666665432 1223444445778899999999888877632 23455678889999999999
Q ss_pred HHHHHHhhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHhhchhC
Q 004362 96 VDVFERMDFYNCEPTVLSYNTIMNILVEYGYFSQVHKVYMRMRNKGIVPDVYTFVIRIKSFCRTRRPHVALRLLKNMPSQ 175 (759)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 175 (759)
.++|-+.. .++-.|..|.+.|+|++|.++-.+... .......|.+-..-.-..|++.+|.+++-.+..
T Consensus 785 e~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~~- 852 (1636)
T KOG3616|consen 785 EELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIGE- 852 (1636)
T ss_pred HHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEccC-
Confidence 99986554 255567888999999999888777654 223445566666666777888888887754432
Q ss_pred CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHH
Q 004362 176 GFEPNAVAYCTLIAGFYEENHNVEAYELFDEMLGMGISPDIATFNKLIHTLCKKGNVRESEKLFNKVLKRGVSPNLFTFN 255 (759)
Q Consensus 176 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 255 (759)
|+ ..|..|-+.|..++.+.+.++-... .-..|...+..-+...|++..|..-|-+.- -|.
T Consensus 853 ---p~-----~aiqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~k 912 (1636)
T KOG3616|consen 853 ---PD-----KAIQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFK 912 (1636)
T ss_pred ---ch-----HHHHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHH
Confidence 22 3466778888888888877764321 123345556677778888888887765432 355
Q ss_pred HHHHHHHhcCCHHHHHHHHHH
Q 004362 256 MFIQGLCRKGAISEAISLLDS 276 (759)
Q Consensus 256 ~l~~~~~~~g~~~~a~~~~~~ 276 (759)
+.+++|-..+.|++|-++-+.
T Consensus 913 aavnmyk~s~lw~dayriakt 933 (1636)
T KOG3616|consen 913 AAVNMYKASELWEDAYRIAKT 933 (1636)
T ss_pred HHHHHhhhhhhHHHHHHHHhc
Confidence 667777777888877766544
No 79
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.39 E-value=1.2e-10 Score=99.78 Aligned_cols=194 Identities=11% Similarity=-0.008 Sum_probs=134.4
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHH
Q 004362 533 TYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAF 612 (759)
Q Consensus 533 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 612 (759)
+...++-.|...|+...|..-+++.++. -|.+..+|..+...|.+.|+.+.|.+.|+++... .|.+..+.|+.+..+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~-DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~FL 113 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH-DPSYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHHH
Confidence 3445666677778888888888777776 3445667777777788888888888888888777 777777888888888
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCcHHH
Q 004362 613 SEKLNFYMAEKLFYEMSEKGCPPD-NYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPS-LSTIGRVINCLCVDHRVHE 690 (759)
Q Consensus 613 ~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~ 690 (759)
+..|++++|...|++++....-|. ..+|..++.+..+.|+.+.|..+|++.++ +.|+ ......+....+..|++-.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~--~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE--LDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH--hCcCCChHHHHHHHHHHhcccchH
Confidence 888888888888888776533333 56777777777778888888888888887 6665 3444556666677788888
Q ss_pred HHHHHHHHHHCCCCCchHHHHHhc----cccccccchHHHHHHHhc
Q 004362 691 AVGFVHLMVQKGIVPEVVNTIFEA----DKREVASPKIVVEDLLKK 732 (759)
Q Consensus 691 A~~~~~~~~~~~~~p~~~~~~~~~----~~~~~~~a~~~~~~~~~~ 732 (759)
|..++++....+. +..-.-|+.- ..|+.+.+.+.-.++.+.
T Consensus 192 Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 192 ARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 8887777766444 4422222222 556666666655555554
No 80
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.38 E-value=2e-07 Score=94.68 Aligned_cols=545 Identities=13% Similarity=0.126 Sum_probs=272.8
Q ss_pred HHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhH
Q 004362 86 YGRRGKVQEAVDVFERMDFYNCEPTVLSYNTIMNILVEYGYFSQVHKVYMRMRNKGIVPDVYTFVIRIKSFCRTRRPHVA 165 (759)
Q Consensus 86 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 165 (759)
|...|+.|.|.+-.+.+. +-..|..+.+.|.+.++++-|.-++-.|.... .|
T Consensus 738 yvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aR----------------------ga 789 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNAR----------------------GA 789 (1416)
T ss_pred EEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhh----------------------hH
Confidence 556777777777666554 33457777777777777777766655554310 01
Q ss_pred HHHHhhchhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 004362 166 LRLLKNMPSQGFEPNAVAYCTLIAGFYEENHNVEAYELFDEMLGMGISPDIATFNKLIHTLCKKGNVRESEKLFNKVLKR 245 (759)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 245 (759)
+.+++..+.+ + ..-..........|..++|..+|.+-.. |..|=..|-..|.+++|.++-+.--+-
T Consensus 790 -RAlR~a~q~~---~-e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRi 855 (1416)
T KOG3617|consen 790 -RALRRAQQNG---E-EDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRI 855 (1416)
T ss_pred -HHHHHHHhCC---c-chhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccce
Confidence 1111112111 1 1111111222345666777777766553 233334555667777777665542221
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhcHH
Q 004362 246 GVSPNLFTFNMFIQGLCRKGAISEAISLLDSLGREDLTPDVVTYNTLMCGLCKNSKVVEAEYYLHKMVNEGLEPDGFSYN 325 (759)
Q Consensus 246 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 325 (759)
. =..||......+-..++.+.|++.|+... .|--..+..|. .++.....+.+.+. |...|.
T Consensus 856 H---Lr~Tyy~yA~~Lear~Di~~AleyyEK~~----~hafev~rmL~------e~p~~~e~Yv~~~~------d~~L~~ 916 (1416)
T KOG3617|consen 856 H---LRNTYYNYAKYLEARRDIEAALEYYEKAG----VHAFEVFRMLK------EYPKQIEQYVRRKR------DESLYS 916 (1416)
T ss_pred e---hhhhHHHHHHHHHhhccHHHHHHHHHhcC----ChHHHHHHHHH------hChHHHHHHHHhcc------chHHHH
Confidence 1 12345555555566677777777776543 22111111111 11122222222222 445555
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC
Q 004362 326 AVIDGYCKAGMISSADKILNDAIFKGFVPDEFTYCSLINGLCQDGDVDRAMAVYVKALEKGLKPSIVLYNTLIKGLSQQG 405 (759)
Q Consensus 326 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 405 (759)
-........|+.+.|+.+|..+.. |.++++..|-.|..++|-++-++.- |......|.+.|-..|
T Consensus 917 WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g 981 (1416)
T KOG3617|consen 917 WWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDG 981 (1416)
T ss_pred HHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhH
Confidence 566666677788888877776543 4456666677777777777654422 5566667777777778
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-------------HhcC--ChHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 004362 406 LILQALQLMNEMSESGCCPDMWTYNIVINGL-------------CKMG--CVSDANNLVNDAISKGYIPDIFTFNTLIDG 470 (759)
Q Consensus 406 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-------------~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 470 (759)
++.+|...|.+.+. +...|+.| ...+ +.-.|..+|++. |. -....+..
T Consensus 982 ~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g~-----~~~~AVmL 1044 (1416)
T KOG3617|consen 982 DVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL---GG-----YAHKAVML 1044 (1416)
T ss_pred HHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---ch-----hhhHHHHH
Confidence 88887777766543 12222222 1111 222233333332 11 11223345
Q ss_pred HHhcCCHHHHHHHHHH--------HHH--CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHH
Q 004362 471 YCKQLKMEIAIEILNT--------MWS--HGVTPDVITYNSLLNGLCKAAKSEDVMETFKTMIEKRCVPNIITYSILGES 540 (759)
Q Consensus 471 ~~~~~~~~~A~~~~~~--------~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 540 (759)
|-+.|.+.+|+++--+ ++. .....|+...+--...+....++++|..++-...+ |...++.
T Consensus 1045 YHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~Alql 1115 (1416)
T KOG3617|consen 1045 YHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQL 1115 (1416)
T ss_pred HHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHH
Confidence 6666766666654221 111 12234667777777778888888888877765543 2222333
Q ss_pred HHhcCCHHHHHHHHHHHHHC--CCCcc---HHHHHHHHHHHHccCChhhHHHHHHHHHHcc---------CCCC------
Q 004362 541 LCKAHKITEAFNLLEEMENK--GLTLD---TVAFGTLINGFCNSGDLDGAYQLFRRMEDQY---------KISH------ 600 (759)
Q Consensus 541 ~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------~~~~------ 600 (759)
|.. .+..-..++-+.|.-. +.++. ...+..+...|.++|.+..|-+-|.++-++- +...
T Consensus 1116 C~~-~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdKl~AMraLLKSGdt~KI~FFA 1194 (1416)
T KOG3617|consen 1116 CKN-RNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDKLSAMRALLKSGDTQKIRFFA 1194 (1416)
T ss_pred Hhc-CCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhHHHHHHHHHhcCCcceEEEEe
Confidence 322 2222233333333211 11111 2345667778888888877777665553320 0000
Q ss_pred ----chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHH--------hcCChHHHHHHHHH------
Q 004362 601 ----TTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFC--------KTGGINSGYCLLLE------ 662 (759)
Q Consensus 601 ----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~--------~~g~~~~A~~~~~~------ 662 (759)
...+ ..|+.-|.+.-+|..--+.++.+. ++......+..|+.-|. ...++++|...+++
T Consensus 1195 n~sRqkEi-YImAANyLQtlDWq~~pq~mK~I~--tFYTKgqafd~LanFY~~cAqiEiee~q~ydKa~gAl~eA~kCl~ 1271 (1416)
T KOG3617|consen 1195 NTSRQKEI-YIMAANYLQTLDWQDNPQTMKDIE--TFYTKGQAFDHLANFYKSCAQIEIEELQTYDKAMGALEEAAKCLL 1271 (1416)
T ss_pred ecccccee-eeehhhhhhhcccccChHHHhhhH--hhhhcchhHHHHHHHHHHHHHhhHHHHhhhhHHhHHHHHHHHHHH
Confidence 0011 112223333333333333333333 12222233444443221 12344555444444
Q ss_pred -HHhCCCC--------CCHHHHHHHHHHH-HhcCcHHHHHHHHHHHHHCCCCCc------hHHHHHhc--cccccccchH
Q 004362 663 -NIDKGFI--------PSLSTIGRVINCL-CVDHRVHEAVGFVHLMVQKGIVPE------VVNTIFEA--DKREVASPKI 724 (759)
Q Consensus 663 -~~~~g~~--------p~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~p~------~~~~~~~~--~~~~~~~a~~ 724 (759)
+-.++.. .+-..+-..+... .-..+..+.++-...|.+.++.|+ .+..+++. ...++..|.+
T Consensus 1272 ka~~k~~~~t~l~~Lq~~~a~vk~~l~~~q~~~eD~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyR 1351 (1416)
T KOG3617|consen 1272 KAEQKNMSTTGLDALQEDLAKVKVQLRKLQIMKEDAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKPAYR 1351 (1416)
T ss_pred HHHhhcchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccHHHH
Confidence 3321100 0111111222222 233577778888888888888776 22233444 7788999999
Q ss_pred HHHHHHhcCCCc
Q 004362 725 VVEDLLKKSHIT 736 (759)
Q Consensus 725 ~~~~~~~~~~~~ 736 (759)
.++.+.++.|.-
T Consensus 1352 al~el~~k~p~~ 1363 (1416)
T KOG3617|consen 1352 ALTELQKKVPNV 1363 (1416)
T ss_pred HHHHHhhcCCcc
Confidence 999999987653
No 81
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.37 E-value=8.6e-10 Score=94.62 Aligned_cols=206 Identities=13% Similarity=0.054 Sum_probs=133.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHh
Q 004362 464 FNTLIDGYCKQLKMEIAIEILNTMWSHGVTPDVITYNSLLNGLCKAAKSEDVMETFKTMIEKRCVPNIITYSILGESLCK 543 (759)
Q Consensus 464 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 543 (759)
...|.-.|...|++..|..-+++.+++.. .+..+|..+...|.+.|+.+.|.+.|+..++.. +-+....+..+.-+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DP-s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDP-SYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 34455567777777777777777777632 245566677777777777777777777777653 2245566666666677
Q ss_pred cCCHHHHHHHHHHHHHC-CCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHH
Q 004362 544 AHKITEAFNLLEEMENK-GLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAE 622 (759)
Q Consensus 544 ~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 622 (759)
.|++++|...|++.... ....-..+|..+.-+..+.|+.+.|...|++..+. .|+.+.....++......|++..|.
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~--dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL--DPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh--CcCCChHHHHHHHHHHhcccchHHH
Confidence 77777777777776654 22223445666666666777777777777777766 6666666777777777777777777
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 004362 623 KLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSLSTIG 676 (759)
Q Consensus 623 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 676 (759)
.++++....+ .++...+...+..-...||-+.+-++=..+.+ ..|....+.
T Consensus 194 ~~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r--~fP~s~e~q 244 (250)
T COG3063 194 LYLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR--LFPYSEEYQ 244 (250)
T ss_pred HHHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCcHHHH
Confidence 7777766654 36666665556666666776666666666655 556555443
No 82
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=6.1e-08 Score=94.93 Aligned_cols=225 Identities=13% Similarity=0.086 Sum_probs=116.2
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHH
Q 004362 44 KYMIDKLGFHGNFEEMENLLLEMRMDVDDSLLEGVHIGVMRNYGRRGKVQEAVDVFERMDFYNCEPTVLSYNTIMNILVE 123 (759)
Q Consensus 44 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (759)
..-++.....|++++|.+...++....|. +..++..-+.+..+.++|++|+.+.+.-.... ..++.. -.-.-+..+
T Consensus 16 ~t~ln~~~~~~e~e~a~k~~~Kil~~~pd--d~~a~~cKvValIq~~ky~~ALk~ikk~~~~~-~~~~~~-fEKAYc~Yr 91 (652)
T KOG2376|consen 16 LTDLNRHGKNGEYEEAVKTANKILSIVPD--DEDAIRCKVVALIQLDKYEDALKLIKKNGALL-VINSFF-FEKAYCEYR 91 (652)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHhcCCC--cHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh-hcchhh-HHHHHHHHH
Confidence 33445556777777777777777777766 67777777777777777777775554332100 011111 112233446
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHhhchhCCCCCCHHhHHHHHHHH-HhcCChhHHHH
Q 004362 124 YGYFSQVHKVYMRMRNKGIVPDVYTFVIRIKSFCRTRRPHVALRLLKNMPSQGFEPNAVAYCTLIAGF-YEENHNVEAYE 202 (759)
Q Consensus 124 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~ 202 (759)
.+..++|+..++-.-. .+..+...-.+.+.+.|++++|..+++.+.+.+. ++ +...+..- ...+ .+..
T Consensus 92 lnk~Dealk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~-dd---~d~~~r~nl~a~~---a~l~ 160 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS-DD---QDEERRANLLAVA---AALQ 160 (652)
T ss_pred cccHHHHHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-ch---HHHHHHHHHHHHH---Hhhh
Confidence 7777777777762211 2333555556667777777777777777766541 11 11111110 0000 0111
Q ss_pred HHHHHHhCCCCCChhhHHHHH---HHHHhcCChhHHHHHHHHHhhCC-------CCC--CHH-----HHHHHHHHHHhcC
Q 004362 203 LFDEMLGMGISPDIATFNKLI---HTLCKKGNVRESEKLFNKVLKRG-------VSP--NLF-----TFNMFIQGLCRKG 265 (759)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~l~---~~~~~~g~~~~a~~~~~~~~~~~-------~~~--~~~-----~~~~l~~~~~~~g 265 (759)
. +.+......| ..+|..+. -.+...|++.+|+++++...+.+ -.- +.. +-..+.-.+...|
T Consensus 161 ~-~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~G 238 (652)
T KOG2376|consen 161 V-QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQG 238 (652)
T ss_pred H-HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhc
Confidence 1 0111111222 22344333 23445677777777777763211 000 111 1122333455678
Q ss_pred CHHHHHHHHHHHhhCCCCCCc
Q 004362 266 AISEAISLLDSLGREDLTPDV 286 (759)
Q Consensus 266 ~~~~a~~~~~~~~~~~~~~~~ 286 (759)
+.++|.+++..+.+.. .+|.
T Consensus 239 qt~ea~~iy~~~i~~~-~~D~ 258 (652)
T KOG2376|consen 239 QTAEASSIYVDIIKRN-PADE 258 (652)
T ss_pred chHHHHHHHHHHHHhc-CCCc
Confidence 8888888888877665 3443
No 83
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=7.4e-08 Score=94.37 Aligned_cols=446 Identities=15% Similarity=0.105 Sum_probs=222.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHH--hcC
Q 004362 188 IAGFYEENHNVEAYELFDEMLGMGISPDIATFNKLIHTLCKKGNVRESEKLFNKVLKRGVSPNLFTFNMFIQGLC--RKG 265 (759)
Q Consensus 188 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g 265 (759)
++.+...+++++|.+...+++..+ +-+...+..-+-+..+.+.+++|+.+.+.-... ..+...+ +=.+|| +.+
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~--fEKAYc~Yrln 93 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFF--FEKAYCEYRLN 93 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhh--HHHHHHHHHcc
Confidence 344455666666666666666554 223444555555566666666666443321110 1011110 123333 566
Q ss_pred CHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHH-HHcCChhHHHHHH
Q 004362 266 AISEAISLLDSLGREDLTPDVVTYNTLMCGLCKNSKVVEAEYYLHKMVNEGLEPDGFSYNAVIDGY-CKAGMISSADKIL 344 (759)
Q Consensus 266 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~~a~~~~ 344 (759)
..++|+..++... +.+..+...-...+.+.+++++|.++|+.+.+.+.+ + +...+++- ...+-.-.+. +.
T Consensus 94 k~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d-d---~d~~~r~nl~a~~a~l~~~-~~ 164 (652)
T KOG2376|consen 94 KLDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD-D---QDEERRANLLAVAAALQVQ-LL 164 (652)
T ss_pred cHHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc-h---HHHHHHHHHHHHHHhhhHH-HH
Confidence 6666666666322 222224444445666677777777777776655322 1 11111110 0000000110 11
Q ss_pred HHHHhCCCCCCcccHHH---HHHHHHhcCCHHHHHHHHHHHHHcC-------CCCCH-------HhHHHHHHHHHhcCCH
Q 004362 345 NDAIFKGFVPDEFTYCS---LINGLCQDGDVDRAMAVYVKALEKG-------LKPSI-------VLYNTLIKGLSQQGLI 407 (759)
Q Consensus 345 ~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~-------~~~~~l~~~~~~~~~~ 407 (759)
+ .....| ..+|.. ....++..|++..|++++......+ -.-+. ..--.|...+...|+.
T Consensus 165 q---~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt 240 (652)
T KOG2376|consen 165 Q---SVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQT 240 (652)
T ss_pred H---hccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcch
Confidence 1 111111 222222 3334555677777777776662211 00000 0112234445567888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHH----HHHHHHHHhcCChHH--HHHHHHHHHHC-----------CCCCCHhhHHHHHHH
Q 004362 408 LQALQLMNEMSESGCCPDMWTY----NIVINGLCKMGCVSD--ANNLVNDAISK-----------GYIPDIFTFNTLIDG 470 (759)
Q Consensus 408 ~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~--a~~~~~~~~~~-----------~~~~~~~~~~~l~~~ 470 (759)
.+|..++...+.... +|.... |.++. .....++.+ ++..++..... ........-+.++.+
T Consensus 241 ~ea~~iy~~~i~~~~-~D~~~~Av~~NNLva-~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l 318 (652)
T KOG2376|consen 241 AEASSIYVDIIKRNP-ADEPSLAVAVNNLVA-LSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLAL 318 (652)
T ss_pred HHHHHHHHHHHHhcC-CCchHHHHHhcchhh-hccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888877777643 233221 22221 111111111 11111111110 000011111233333
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHH
Q 004362 471 YCKQLKMEIAIEILNTMWSHGVTPDVITYNSLLNGLC--KAAKSEDVMETFKTMIEKRCVPNIITYSILGESLCKAHKIT 548 (759)
Q Consensus 471 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 548 (759)
|. +..+.+.++....... .|.. .+..++..+. +...+..+.+++....+....-.......+++.....|+++
T Consensus 319 ~t--nk~~q~r~~~a~lp~~--~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~ 393 (652)
T KOG2376|consen 319 FT--NKMDQVRELSASLPGM--SPES-LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPE 393 (652)
T ss_pred Hh--hhHHHHHHHHHhCCcc--CchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH
Confidence 33 3334444443333221 2333 3344443332 22356778888777766532222445666777788999999
Q ss_pred HHHHHHH--------HHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccC-----CCCchhhHHHHHHHHHhc
Q 004362 549 EAFNLLE--------EMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYK-----ISHTTATYNIMINAFSEK 615 (759)
Q Consensus 549 ~a~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~ 615 (759)
.|.+++. .+.+.+ ..+.+...+...+.+.++-+.|..++..+...+. .+.-..++...+..-.+.
T Consensus 394 ~A~~il~~~~~~~~ss~~~~~--~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~ 471 (652)
T KOG2376|consen 394 VALEILSLFLESWKSSILEAK--HLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRH 471 (652)
T ss_pred HHHHHHHHHhhhhhhhhhhhc--cChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhc
Confidence 9999999 444433 3455566777888888888888888777765321 122223344445555677
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHH
Q 004362 616 LNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCLLLE 662 (759)
Q Consensus 616 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 662 (759)
|+-++|..+++++.+.. ++|..+...++.+|+.. |.+.|..+-..
T Consensus 472 G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 472 GNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred CchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 99999999999999753 66788888888888764 56666665444
No 84
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.35 E-value=3.2e-08 Score=100.93 Aligned_cols=128 Identities=16% Similarity=0.115 Sum_probs=65.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhC
Q 004362 220 NKLIHTLCKKGNVRESEKLFNKVLKRGVSPNLFTFNMFIQGLCRKGAISEAISLLDSLGREDLTPDVVTYNTLMCGLCKN 299 (759)
Q Consensus 220 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 299 (759)
..+...|...|++++|.+.++..++..+ ..+..|..-.+.+-+.|++.+|.+.++.....+ ..|...-+.....+.+.
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~htP-t~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa 275 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIEHTP-TLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRA 275 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHC
Confidence 3334445555666666666666555521 124455555555556666666666665555443 33444444455555566
Q ss_pred CChHHHHHHHHHHHHCCCCCChhc--------HHHHHHHHHHcCChhHHHHHHHHHHh
Q 004362 300 SKVVEAEYYLHKMVNEGLEPDGFS--------YNAVIDGYCKAGMISSADKILNDAIF 349 (759)
Q Consensus 300 ~~~~~a~~~~~~~~~~~~~~~~~~--------~~~ll~~~~~~~~~~~a~~~~~~~~~ 349 (759)
|++++|.+++......+..|.... ......+|.+.|++..|++.|..+.+
T Consensus 276 ~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 276 GRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred CCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 666666666555554433221111 12234455566666666555554443
No 85
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.35 E-value=1.6e-07 Score=94.07 Aligned_cols=370 Identities=16% Similarity=0.121 Sum_probs=208.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 004362 187 LIAGFYEENHNVEAYELFDEMLGMGISPDIATFNKLIHTLCKKGNVRESEKLFNKVLKRGVSPNLFTFNMFIQGLCRKGA 266 (759)
Q Consensus 187 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 266 (759)
.|..|....+|++++.+-+.. |.+.-...-.+.++++...|+-+.|-++- .+ +.. -.+.|+.|.+.|.
T Consensus 563 aigmy~~lhkwde~i~lae~~---~~p~~eklk~sy~q~l~dt~qd~ka~elk----~s----dgd-~laaiqlyika~~ 630 (1636)
T KOG3616|consen 563 AIGMYQELHKWDEAIALAEAK---GHPALEKLKRSYLQALMDTGQDEKAAELK----ES----DGD-GLAAIQLYIKAGK 630 (1636)
T ss_pred HHHHHHHHHhHHHHHHHHHhc---CChHHHHHHHHHHHHHHhcCchhhhhhhc----cc----cCc-cHHHHHHHHHcCC
Confidence 344555555566665544321 11111112233344445555555444321 11 111 1245667777777
Q ss_pred HHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHHcCChhHHHHHHHH
Q 004362 267 ISEAISLLDSLGREDLTPDVVTYNTLMCGLCKNSKVVEAEYYLHKMVNEGLEPDGFSYNAVIDGYCKAGMISSADKILND 346 (759)
Q Consensus 267 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 346 (759)
+..|.+....-. .+..|......+..++.+..-+++|-++|+++.. +...+..|-+..-+-+|.++-+-
T Consensus 631 p~~a~~~a~n~~--~l~~de~il~~ia~alik~elydkagdlfeki~d---------~dkale~fkkgdaf~kaielarf 699 (1636)
T KOG3616|consen 631 PAKAARAALNDE--ELLADEEILEHIAAALIKGELYDKAGDLFEKIHD---------FDKALECFKKGDAFGKAIELARF 699 (1636)
T ss_pred chHHHHhhcCHH--HhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC---------HHHHHHHHHcccHHHHHHHHHHh
Confidence 766655432111 1134445555555666666666666666666542 11122333333334445444332
Q ss_pred HHhCCCCCCccc-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 004362 347 AIFKGFVPDEFT-YCSLINGLCQDGDVDRAMAVYVKALEKGLKPSIVLYNTLIKGLSQQGLILQALQLMNEMSESGCCPD 425 (759)
Q Consensus 347 ~~~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 425 (759)
.. +..... -......+...|+++.|+.-|-+... .-..+.+-.....|.+|+.+++.++.... .
T Consensus 700 af----p~evv~lee~wg~hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ildniqdqk~--~ 764 (1636)
T KOG3616|consen 700 AF----PEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISILDNIQDQKT--A 764 (1636)
T ss_pred hC----cHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHHHhhhhcc--c
Confidence 21 111111 12334445566777777776654432 12234455566788888888888776532 2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004362 426 MWTYNIVINGLCKMGCVSDANNLVNDAISKGYIPDIFTFNTLIDGYCKQLKMEIAIEILNTMWSHGVTPDVITYNSLLNG 505 (759)
Q Consensus 426 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 505 (759)
.--|-.+...|...|+++.|.++|.+.- .++-.|.+|.+.|+|+.|.++-.+... .......|-.-..-
T Consensus 765 s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaed 833 (1636)
T KOG3616|consen 765 SGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAED 833 (1636)
T ss_pred cccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHh
Confidence 2345566778888888888888876432 345567788888888888888766543 33345556555666
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhH
Q 004362 506 LCKAAKSEDVMETFKTMIEKRCVPNIITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGA 585 (759)
Q Consensus 506 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 585 (759)
+-.+|++.+|.++|-... .|+ ..++.|-+.|..+..+++.++.... .-..+...+..-|...|++..|
T Consensus 834 ldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaa 901 (1636)
T KOG3616|consen 834 LDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAA 901 (1636)
T ss_pred HHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHH
Confidence 677888888877764432 344 3456778888888887776664321 1233445666777888888888
Q ss_pred HHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 004362 586 YQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYE 627 (759)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 627 (759)
...|-++.+ |..-.+.|...+-|++|-++.+.
T Consensus 902 e~~flea~d----------~kaavnmyk~s~lw~dayriakt 933 (1636)
T KOG3616|consen 902 EEHFLEAGD----------FKAAVNMYKASELWEDAYRIAKT 933 (1636)
T ss_pred HHHHHhhhh----------HHHHHHHhhhhhhHHHHHHHHhc
Confidence 887755532 34556677777777777666553
No 86
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.35 E-value=5.8e-07 Score=91.40 Aligned_cols=139 Identities=9% Similarity=0.047 Sum_probs=91.5
Q ss_pred HHHhCCChHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCC---------CCCCHHHHHHHHH
Q 004362 49 KLGFHGNFEEMENLLLEMRMDVDDSLLEGVHIGVMRNYGRRGKVQEAVDVFERMDFYN---------CEPTVLSYNTIMN 119 (759)
Q Consensus 49 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------~~~~~~~~~~l~~ 119 (759)
.|..-|+.+.|.+.++.++ +..+|..+++.+.+..++|-|.-++..|.... ..++ ..-.-+.-
T Consensus 737 fyvtiG~MD~AfksI~~Ik-------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAv 808 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFIK-------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAV 808 (1416)
T ss_pred EEEEeccHHHHHHHHHHHh-------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHH
Confidence 3446788888887777665 45688999999999988888877776554110 0111 11112223
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHhhchhCCCCCCHHhHHHHHHHHHhcCChhH
Q 004362 120 ILVEYGYFSQVHKVYMRMRNKGIVPDVYTFVIRIKSFCRTRRPHVALRLLKNMPSQGFEPNAVAYCTLIAGFYEENHNVE 199 (759)
Q Consensus 120 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 199 (759)
.-.+.|.+++|..+|.+..+ |..|=+.|-..|.+++|.++-+.--+.. =..+|......+-..++.+.
T Consensus 809 LAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~ 876 (1416)
T KOG3617|consen 809 LAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEA 876 (1416)
T ss_pred HHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHH
Confidence 34577888999999988876 3334455667788898888776533322 23456666666667778888
Q ss_pred HHHHHHHH
Q 004362 200 AYELFDEM 207 (759)
Q Consensus 200 a~~~~~~~ 207 (759)
|++.|++.
T Consensus 877 AleyyEK~ 884 (1416)
T KOG3617|consen 877 ALEYYEKA 884 (1416)
T ss_pred HHHHHHhc
Confidence 88887764
No 87
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.33 E-value=1.1e-09 Score=106.00 Aligned_cols=219 Identities=11% Similarity=0.009 Sum_probs=114.6
Q ss_pred CChHHHHHHHHHhhhcCCCCCC--HHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHH
Q 004362 18 KNPLTALEMFNSVKREDGFKHT--LLTYKYMIDKLGFHGNFEEMENLLLEMRMDVDDSLLEGVHIGVMRNYGRRGKVQEA 95 (759)
Q Consensus 18 ~~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 95 (759)
+..+.++..|..++...+..|+ ...|...+.++...|++++|...|+.+...+|. +..+++.++..+...|++++|
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~--~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD--MADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHCCCHHHH
Confidence 4445566666655543222222 234555666666667777777777766666666 666666677777777777777
Q ss_pred HHHHHHhhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHhhchhC
Q 004362 96 VDVFERMDFYNCEPTVLSYNTIMNILVEYGYFSQVHKVYMRMRNKGIVPDVYTFVIRIKSFCRTRRPHVALRLLKNMPSQ 175 (759)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 175 (759)
+..|++..+.. +.+..+|..++.++...|++++|.+.|+...+.. |+..........+...+++++|...|.+....
T Consensus 118 ~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 118 YEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 77776666543 3345556666666666677777777776666643 33211111112233445666666666554332
Q ss_pred CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC---CC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCC
Q 004362 176 GFEPNAVAYCTLIAGFYEENHNVEAYELFDEMLGM---GI---SPDIATFNKLIHTLCKKGNVRESEKLFNKVLKRG 246 (759)
Q Consensus 176 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 246 (759)
. +++...+ .+ .....|+...+ +.++.+.+. .+ +.....|..+...+.+.|++++|...|++.++.+
T Consensus 195 ~-~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 195 L-DKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred C-CccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 1 2222221 11 12223443332 233333211 00 0112345556666666666666666666666543
No 88
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.31 E-value=8.8e-10 Score=110.56 Aligned_cols=239 Identities=15% Similarity=0.093 Sum_probs=164.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC-C
Q 004362 462 FTFNTLIDGYCKQLKMEIAIEILNTMWSH-----G-VTPDVIT-YNSLLNGLCKAAKSEDVMETFKTMIEK-----RC-V 528 (759)
Q Consensus 462 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~-~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~ 528 (759)
.+...+...|...|+++.|+.+++..+.. | ..|.+.+ .+.+...|...+++++|+.+|++++.. |. .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34444666666667777666666665543 1 1223322 334667778888888888888887753 21 1
Q ss_pred C-ChhcHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CccH-HHHHHHHHHHHccCChhhHHHHHHHHHHccC---
Q 004362 529 P-NIITYSILGESLCKAHKITEAFNLLEEMENK-----GL-TLDT-VAFGTLINGFCNSGDLDGAYQLFRRMEDQYK--- 597 (759)
Q Consensus 529 ~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--- 597 (759)
| -..++..|..+|...|++++|...++++.+. +. .|.. ..+..++..|+..+++++|..+++...+...
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 1 1236777778888888888888887776642 11 1222 2356677788889999999999988765432
Q ss_pred ---CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC----C--CCC-HhhHHHHHHHHHhcCChHHHHHHHHHHHh--
Q 004362 598 ---ISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKG----C--PPD-NYTYRIMIDSFCKTGGINSGYCLLLENID-- 665 (759)
Q Consensus 598 ---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~--~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 665 (759)
.+....++..|+..|...|++++|.++++++++.. . .+. ...++.++.+|.+.+++++|..+|.+...
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 22346788999999999999999999999987641 1 222 45678899999999999999999988653
Q ss_pred --CCCC-CC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 004362 666 --KGFI-PS-LSTIGRVINCLCVDHRVHEAVGFVHLMVQ 700 (759)
Q Consensus 666 --~g~~-p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 700 (759)
.|.. |+ ..++..|...|...|++++|.++.+....
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 2322 33 23455677777899999999999988763
No 89
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=1.5e-08 Score=98.18 Aligned_cols=386 Identities=15% Similarity=0.085 Sum_probs=207.7
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCCH
Q 004362 294 CGLCKNSKVVEAEYYLHKMVNEGLEPDGFSYNAVIDGYCKAGMISSADKILNDAIFKGFVPD-EFTYCSLINGLCQDGDV 372 (759)
Q Consensus 294 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~ 372 (759)
.+.+..|+++.|+..|-+..... ++|...|..-..+|++.|++++|.+--.+.++. .|+ +..|+....++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccH
Confidence 45567899999999999998875 448888999999999999999998877776665 455 35788999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHH---HHHHHHHHhC---CCCCCHHHHHHHHHHHHh--------
Q 004362 373 DRAMAVYVKALEKGLKPSIVLYNTLIKGLSQQGLILQA---LQLMNEMSES---GCCPDMWTYNIVINGLCK-------- 438 (759)
Q Consensus 373 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a---~~~~~~~~~~---~~~~~~~~~~~l~~~~~~-------- 438 (759)
++|+.-|.+-++..+. +...++-+..++.......+. -.++..+... ........|..++..+-+
T Consensus 87 ~eA~~ay~~GL~~d~~-n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~ 165 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPS-NKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLY 165 (539)
T ss_pred HHHHHHHHHHhhcCCc-hHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcc
Confidence 9999999999888655 777788888877211000000 0011110000 000001112222221110
Q ss_pred --cCChHHHHHHHHHH-----HHC-------CCCC------------C----------HhhHHHHHHHHHhcCCHHHHHH
Q 004362 439 --MGCVSDANNLVNDA-----ISK-------GYIP------------D----------IFTFNTLIDGYCKQLKMEIAIE 482 (759)
Q Consensus 439 --~~~~~~a~~~~~~~-----~~~-------~~~~------------~----------~~~~~~l~~~~~~~~~~~~A~~ 482 (759)
-..+..+.-.+... ... +..| | ..-...+..+..+..+++.|++
T Consensus 166 l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q 245 (539)
T KOG0548|consen 166 LNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQ 245 (539)
T ss_pred cccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHH
Confidence 00011111111000 000 0011 0 1122345666667778888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh-------cHHHHHHHHHhcCCHHHHHHHHH
Q 004362 483 ILNTMWSHGVTPDVITYNSLLNGLCKAAKSEDVMETFKTMIEKRCVPNII-------TYSILGESLCKAHKITEAFNLLE 555 (759)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~ 555 (759)
-+....... -+..-++....+|...|.+.+........++.|-. ... .+..++.++.+.++++.++..|+
T Consensus 246 ~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ 322 (539)
T KOG0548|consen 246 HYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQ 322 (539)
T ss_pred HHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHH
Confidence 888777753 34555566667777777777766666665554311 111 22334455666677888888888
Q ss_pred HHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 004362 556 EMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPP 635 (759)
Q Consensus 556 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 635 (759)
+.+.....|+.. .+....+++....+...-. .|.-..--..-+..+...|++.+|+..|.+++.+. |.
T Consensus 323 kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~ 390 (539)
T KOG0548|consen 323 KALTEHRTPDLL---------SKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PE 390 (539)
T ss_pred HHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-Cc
Confidence 766542232221 1122223333332222221 22222222233444555555555555555555443 22
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCcHHHHHHHHHHHHH
Q 004362 636 DNYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSLSTIG-RVINCLCVDHRVHEAVGFVHLMVQ 700 (759)
Q Consensus 636 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~ 700 (759)
|...|.....+|.+.|.+..|+.-.+..++ +.|+....+ .-+.++....+|++|.+.|++.++
T Consensus 391 Da~lYsNRAac~~kL~~~~~aL~Da~~~ie--L~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 391 DARLYSNRAACYLKLGEYPEALKDAKKCIE--LDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355555555555555555555555555555 455443332 223333444555555555555554
No 90
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=4.1e-08 Score=95.25 Aligned_cols=418 Identities=15% Similarity=0.070 Sum_probs=272.2
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hhcHHHHHHHHHHcCCh
Q 004362 259 QGLCRKGAISEAISLLDSLGREDLTPDVVTYNTLMCGLCKNSKVVEAEYYLHKMVNEGLEPD-GFSYNAVIDGYCKAGMI 337 (759)
Q Consensus 259 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~ 337 (759)
.+.+..|+++.|...|.+..... ++|.+.|+.-..+|...|++++|++--.+-.+. .|+ ...|.....++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccH
Confidence 45667899999999999988776 668999999999999999999998876666654 444 45788888888999999
Q ss_pred hHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHH------HHHHHc---CCCCCHHhHHHHHHHHH------
Q 004362 338 SSADKILNDAIFKGFVPDEFTYCSLINGLCQDGDVDRAMAVY------VKALEK---GLKPSIVLYNTLIKGLS------ 402 (759)
Q Consensus 338 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~------~~~~~~---~~~~~~~~~~~l~~~~~------ 402 (759)
++|+..|.+-++.. +.+...++.+..++... . .+.+.| ..+... ........|..++..+-
T Consensus 87 ~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~--~-~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l 162 (539)
T KOG0548|consen 87 EEAILAYSEGLEKD-PSNKQLKTGLAQAYLED--Y-AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSL 162 (539)
T ss_pred HHHHHHHHHHhhcC-CchHHHHHhHHHhhhHH--H-HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhh
Confidence 99999999988774 33566777777776211 0 001111 111000 00001111222222111
Q ss_pred ----hcCCHHHHHHHHHH-----HHhC-------CCCC------------C----------HHHHHHHHHHHHhcCChHH
Q 004362 403 ----QQGLILQALQLMNE-----MSES-------GCCP------------D----------MWTYNIVINGLCKMGCVSD 444 (759)
Q Consensus 403 ----~~~~~~~a~~~~~~-----~~~~-------~~~~------------~----------~~~~~~l~~~~~~~~~~~~ 444 (759)
+..+...+.-.+.. +... +..| + ..-...+.++..+..++..
T Consensus 163 ~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~ 242 (539)
T KOG0548|consen 163 KLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFET 242 (539)
T ss_pred hcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHH
Confidence 10111111111110 0000 0111 0 1123445566667778888
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH-------HHHHHHhcCCHHHHHH
Q 004362 445 ANNLVNDAISKGYIPDIFTFNTLIDGYCKQLKMEIAIEILNTMWSHGVTPDVITYNS-------LLNGLCKAAKSEDVME 517 (759)
Q Consensus 445 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~~~~~~a~~ 517 (759)
+.+.+....... .+..-++....+|...|.+..+...-....+.|.. ...-++. +..+|.+.++++.++.
T Consensus 243 a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~ 319 (539)
T KOG0548|consen 243 AIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIK 319 (539)
T ss_pred HHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHH
Confidence 888888887764 46666777778899999988888887777665432 2222333 3335666788899999
Q ss_pred HHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccH-HHHHHHHHHHHccCChhhHHHHHHHHHHcc
Q 004362 518 TFKTMIEKRCVPNIITYSILGESLCKAHKITEAFNLLEEMENKGLTLDT-VAFGTLINGFCNSGDLDGAYQLFRRMEDQY 596 (759)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 596 (759)
.|++.+..-..|+ ...+....+++....+...-. .|.. .-...-...+.+.|++..|+..|.+++..
T Consensus 320 ~~~kaLte~Rt~~---------~ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr- 387 (539)
T KOG0548|consen 320 YYQKALTEHRTPD---------LLSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR- 387 (539)
T ss_pred HHHHHhhhhcCHH---------HHHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc-
Confidence 9998776532332 222334445555555444432 2222 22233366778899999999999999998
Q ss_pred CCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH
Q 004362 597 KISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPD-NYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSLSTI 675 (759)
Q Consensus 597 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 675 (759)
.|+|...|.+.+-+|...|.+..|+.-.+..++. .|+ ...|.-=+.++....+|+.|...|.++++ ++|++..+
T Consensus 388 -~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~eale--~dp~~~e~ 462 (539)
T KOG0548|consen 388 -DPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEALE--LDPSNAEA 462 (539)
T ss_pred -CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCchhHHH
Confidence 8999999999999999999999999999999876 455 66777777788889999999999999999 88988777
Q ss_pred HHHHHHHHhc-CcHHHHHHHHHHHHHCCCCCc
Q 004362 676 GRVINCLCVD-HRVHEAVGFVHLMVQKGIVPE 706 (759)
Q Consensus 676 ~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~p~ 706 (759)
...+..+..+ ...+...++.++.. .+|+
T Consensus 463 ~~~~~rc~~a~~~~~~~ee~~~r~~---~dpe 491 (539)
T KOG0548|consen 463 IDGYRRCVEAQRGDETPEETKRRAM---ADPE 491 (539)
T ss_pred HHHHHHHHHHhhcCCCHHHHHHhhc---cCHH
Confidence 6555555432 23333344444432 3565
No 91
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.27 E-value=3.1e-09 Score=106.67 Aligned_cols=199 Identities=21% Similarity=0.205 Sum_probs=138.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCCh-
Q 004362 466 TLIDGYCKQLKMEIAIEILNTMWSH-----GV-TP-DVITYNSLLNGLCKAAKSEDVMETFKTMIEK-----R-CVPNI- 531 (759)
Q Consensus 466 ~l~~~~~~~~~~~~A~~~~~~~~~~-----~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~- 531 (759)
.+...|...+++.+|..+|+++... |- .| -..+++.|..+|.+.|++++|..++++..+. + ..|..
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~ 325 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVA 325 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHH
Confidence 4556677777777777777776643 11 11 1345666677777778877777776665542 1 11222
Q ss_pred hcHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCc----cHHHHHHHHHHHHccCChhhHHHHHHHHHHcc----C--C
Q 004362 532 ITYSILGESLCKAHKITEAFNLLEEMENK---GLTL----DTVAFGTLINGFCNSGDLDGAYQLFRRMEDQY----K--I 598 (759)
Q Consensus 532 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~--~ 598 (759)
..++.++..|...+++++|..+++...+. -+.+ -..++..+...|...|++++|.++|+.++... + .
T Consensus 326 ~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~ 405 (508)
T KOG1840|consen 326 AQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKD 405 (508)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcC
Confidence 24556677778888888888888876642 1122 24568889999999999999999999887643 1 3
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH----cCC-CCC-HhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 004362 599 SHTTATYNIMINAFSEKLNFYMAEKLFYEMSE----KGC-PPD-NYTYRIMIDSFCKTGGINSGYCLLLENI 664 (759)
Q Consensus 599 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 664 (759)
+.....++.++..|.+.+++.+|.++|.+... .|. .|+ ..+|..|+..|...|+++.|.++.+...
T Consensus 406 ~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 406 YGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 33456778888899888998888888887542 221 234 5789999999999999999999999876
No 92
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.26 E-value=5.7e-09 Score=100.95 Aligned_cols=227 Identities=11% Similarity=-0.039 Sum_probs=129.5
Q ss_pred ChHHHHHHHHHHHHCCC-C--CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004362 441 CVSDANNLVNDAISKGY-I--PDIFTFNTLIDGYCKQLKMEIAIEILNTMWSHGVTPDVITYNSLLNGLCKAAKSEDVME 517 (759)
Q Consensus 441 ~~~~a~~~~~~~~~~~~-~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 517 (759)
..+.++..+.+++.... . .....|..+...|...|+.++|...|++..+..+ .+...|+.+...+...|++++|..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHHH
Confidence 44555555555554321 1 1234466666667777777777777777776532 256677777777777777777777
Q ss_pred HHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccC
Q 004362 518 TFKTMIEKRCVPNIITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYK 597 (759)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 597 (759)
.|++.++.. +-+..++..++.++...|++++|.+.++...+.. +.+.. .......+...++.++|...|++....
T Consensus 120 ~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~-P~~~~-~~~~~~l~~~~~~~~~A~~~l~~~~~~-- 194 (296)
T PRK11189 120 AFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD-PNDPY-RALWLYLAESKLDPKQAKENLKQRYEK-- 194 (296)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHccCCHHHHHHHHHHHHhh--
Confidence 777777653 2234566667777777777777777777777642 22221 111122234556777777777665433
Q ss_pred CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc---C--CCC-CHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-
Q 004362 598 ISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEK---G--CPP-DNYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIP- 670 (759)
Q Consensus 598 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~--~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p- 670 (759)
.+++. |. ........|+..++ ..++.+.+. . +.| ...+|..++..+...|++++|+.+|+++++ ..|
T Consensus 195 ~~~~~--~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~--~~~~ 268 (296)
T PRK11189 195 LDKEQ--WG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALA--NNVY 268 (296)
T ss_pred CCccc--cH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCc
Confidence 22221 11 12222334444333 233333311 0 112 245777888888888888888888888887 554
Q ss_pred CHHHHHHHH
Q 004362 671 SLSTIGRVI 679 (759)
Q Consensus 671 ~~~~~~~l~ 679 (759)
+...+...+
T Consensus 269 ~~~e~~~~~ 277 (296)
T PRK11189 269 NFVEHRYAL 277 (296)
T ss_pred hHHHHHHHH
Confidence 554444433
No 93
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.26 E-value=8.8e-10 Score=107.41 Aligned_cols=251 Identities=14% Similarity=0.048 Sum_probs=176.5
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004362 436 LCKMGCVSDANNLVNDAISKGYIPDIFTFNTLIDGYCKQLKMEIAIEILNTMWSHGVTPDVITYNSLLNGLCKAAKSEDV 515 (759)
Q Consensus 436 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 515 (759)
+.+.|++.+|.-.|+..++.. +.+...|..|.......++-..|+..+++..+.... +......|...|...|.-.+|
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHH
Confidence 456677777777777777664 346677777777777777777777777777776422 566667777777777777777
Q ss_pred HHHHHHHHHcCCC-----C---ChhcHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCccHHHHHHHHHHHHccCChhhHH
Q 004362 516 METFKTMIEKRCV-----P---NIITYSILGESLCKAHKITEAFNLLEEME-NKGLTLDTVAFGTLINGFCNSGDLDGAY 586 (759)
Q Consensus 516 ~~~~~~~~~~~~~-----~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 586 (759)
+..++.-+...++ + +...-.. ..+..........++|-++. ..+..+|+.+...|.-.|...|++++|+
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 7777665543210 0 0000000 01111112233444444443 4454578888899999999999999999
Q ss_pred HHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004362 587 QLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPD-NYTYRIMIDSFCKTGGINSGYCLLLENID 665 (759)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 665 (759)
+.|+.++.. .|.|..+||.|+..+....+.++|+.-|+++++ +.|+ ..++..|+-+|...|.|++|.+.|-.++.
T Consensus 451 Dcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 451 DCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 999999998 999999999999999999999999999999994 5898 77888999999999999999999999875
Q ss_pred C---CC------CCCHHHHHHHHHHHHhcCcHHHHHHH
Q 004362 666 K---GF------IPSLSTIGRVINCLCVDHRVHEAVGF 694 (759)
Q Consensus 666 ~---g~------~p~~~~~~~l~~~~~~~g~~~~A~~~ 694 (759)
. +- .++...|..|-.++.-.++.|-+.+.
T Consensus 527 mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 527 MQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 1 11 12234566666666666776644443
No 94
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.23 E-value=1.5e-07 Score=85.75 Aligned_cols=194 Identities=9% Similarity=0.034 Sum_probs=113.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHH
Q 004362 470 GYCKQLKMEIAIEILNTMWSHGVTPDVITYNSLLNGLCKAAKSEDVMETFKTMIEKRCVPNIITYSILGESLCKAHKITE 549 (759)
Q Consensus 470 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 549 (759)
.+...|+...|++....+++.. +.|...+..-..+|...|++..|+.=++...+.. ..+..++..+...+...|+.+.
T Consensus 164 s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~ 241 (504)
T KOG0624|consen 164 SASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAEN 241 (504)
T ss_pred HHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHH
Confidence 3445566667777776666653 3466666666667777777777766555554432 3355566666666666777777
Q ss_pred HHHHHHHHHHCCCCccHHHH----HHH---------HHHHHccCChhhHHHHHHHHHHccCCCC-c---hhhHHHHHHHH
Q 004362 550 AFNLLEEMENKGLTLDTVAF----GTL---------INGFCNSGDLDGAYQLFRRMEDQYKISH-T---TATYNIMINAF 612 (759)
Q Consensus 550 a~~~~~~~~~~~~~~~~~~~----~~l---------~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~---~~~~~~l~~~~ 612 (759)
++...++.++. .||.... ..+ +......+++.++++..+...+. .|. . ...+..+-.++
T Consensus 242 sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~--ep~~~~ir~~~~r~~c~C~ 317 (504)
T KOG0624|consen 242 SLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN--EPEETMIRYNGFRVLCTCY 317 (504)
T ss_pred HHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc--CCcccceeeeeeheeeecc
Confidence 76666666653 3443221 111 11223445566666666666554 333 1 12233444566
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 004362 613 SEKLNFYMAEKLFYEMSEKGCPPD-NYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSLS 673 (759)
Q Consensus 613 ~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 673 (759)
...+++.+|++...++++ +.|| ..++.--..+|.....|+.|+.-|+++.+ .+|++.
T Consensus 318 ~~d~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e--~n~sn~ 375 (504)
T KOG0624|consen 318 REDEQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE--LNESNT 375 (504)
T ss_pred cccCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCcccH
Confidence 666777777777777763 3454 66666666677777777777777777776 555543
No 95
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=99.19 E-value=6.3e-06 Score=85.39 Aligned_cols=226 Identities=15% Similarity=0.086 Sum_probs=137.6
Q ss_pred cCCChHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHH
Q 004362 16 HQKNPLTALEMFNSVKREDGFKHTLLTYKYMIDKLGFHGNFEEMENLLLEMRMDVDDSLLEGVHIGVMRNYGRRGKVQEA 95 (759)
Q Consensus 16 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 95 (759)
..++.+.|++-....++++|..+...++..+. +.+.|+.++|..+++..-...+. +...+..+-.+|...+++++|
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLs--l~r~gk~~ea~~~Le~~~~~~~~--D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALS--LFRLGKGDEALKLLEALYGLKGT--DDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHH--HHHhcCchhHHHHHhhhccCCCC--chHHHHHHHHHHHHHhhhhHH
Confidence 35678888888888888877666666555554 56888888888777665555454 666777788888888888888
Q ss_pred HHHHHHhhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-C---------hhhH
Q 004362 96 VDVFERMDFYNCEPTVLSYNTIMNILVEYGYFSQVHKVYMRMRNKGIVPDVYTFVIRIKSFCRTR-R---------PHVA 165 (759)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~---------~~~A 165 (759)
..+|+++.... |+......+..+|.+-+++.+-.++--++.+. ++-+...+=.+++...... . ..-|
T Consensus 97 ~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 97 VHLYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 88888887553 56677777888888888777666665555553 2233444434444433221 1 1124
Q ss_pred HHHHhhchhCC-CCCCHHhHHHHHHHHHhcCChhHHHHHHHH-HHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHh
Q 004362 166 LRLLKNMPSQG-FEPNAVAYCTLIAGFYEENHNVEAYELFDE-MLGMGISPDIATFNKLIHTLCKKGNVRESEKLFNKVL 243 (759)
Q Consensus 166 ~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 243 (759)
.+.++.+.+.+ .--+..-.......+...|.+++|++++.. ....-...+...-+.-+..+...+++.+..++-.++.
T Consensus 174 ~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 174 EKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 55555555443 111111122223334456677777777733 2222222233334455666667777777777777777
Q ss_pred hCCCC
Q 004362 244 KRGVS 248 (759)
Q Consensus 244 ~~~~~ 248 (759)
..|.+
T Consensus 254 ~k~~D 258 (932)
T KOG2053|consen 254 EKGND 258 (932)
T ss_pred HhCCc
Confidence 66543
No 96
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.19 E-value=8.8e-08 Score=85.36 Aligned_cols=290 Identities=14% Similarity=0.149 Sum_probs=192.9
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHH-HHHHHH
Q 004362 44 KYMIDKLGFHGNFEEMENLLLEMRMDVDDSLLEGVHIGVMRNYGRRGKVQEAVDVFERMDFYNCEPTVLSYNT-IMNILV 122 (759)
Q Consensus 44 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~ 122 (759)
...+..+.+-.++..|++++..-.+.+|. +...+..++.+|....++..|-.+++++... .|...-|.. -.+.+.
T Consensus 14 taviy~lI~d~ry~DaI~~l~s~~Er~p~--~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 14 TAVVYRLIRDARYADAIQLLGSELERSPR--SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCcc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 34455556778899999998888888876 7777888889999999999999999888743 344333332 245667
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHccCChhhHHHHHhhchhCCCCCCHHhHHHHHHHHHhcCChhHH
Q 004362 123 EYGYFSQVHKVYMRMRNKGIVPDVYTFVIRIKS--FCRTRRPHVALRLLKNMPSQGFEPNAVAYCTLIAGFYEENHNVEA 200 (759)
Q Consensus 123 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 200 (759)
+.+.+..|+.+...|... |+...-..-+.+ ....+++..++.++++.+..+ +..+.+.......+.|++++|
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHH
Confidence 788888888888877652 332222222222 235678888888888887654 456666666777889999999
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC-------------CHH---------------
Q 004362 201 YELFDEMLGMGISPDIATFNKLIHTLCKKGNVRESEKLFNKVLKRGVSP-------------NLF--------------- 252 (759)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-------------~~~--------------- 252 (759)
.+-|+...+.+--.....|+..+.. .+.|+++.|++...+++++|+.. |+.
T Consensus 164 vqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~e 242 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVE 242 (459)
T ss_pred HHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHH
Confidence 9999998887655456677766544 46788999999999888876431 211
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHH
Q 004362 253 TFNMFIQGLCRKGAISEAISLLDSLGRE-DLTPDVVTYNTLMCGLCKNSKVVEAEYYLHKMVNEGLEPDGFSYNAVIDGY 331 (759)
Q Consensus 253 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 331 (759)
.+|.-...+.+.|+++.|.+.+..|+-+ ....|++|...+.-.- ..+++.....-+.-++..++ -...||..++-.|
T Consensus 243 AfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLlly 320 (459)
T KOG4340|consen 243 AFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLY 320 (459)
T ss_pred HhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHH
Confidence 1222222345677888888888777633 1234555555443221 24455555555555555533 3456788888888
Q ss_pred HHcCChhHHHHHHHH
Q 004362 332 CKAGMISSADKILND 346 (759)
Q Consensus 332 ~~~~~~~~a~~~~~~ 346 (759)
|++.-++.|-+++.+
T Consensus 321 CKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 321 CKNEYFDLAADVLAE 335 (459)
T ss_pred hhhHHHhHHHHHHhh
Confidence 888888888777654
No 97
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.18 E-value=3.7e-07 Score=83.24 Aligned_cols=187 Identities=9% Similarity=0.074 Sum_probs=101.8
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhH
Q 004362 506 LCKAAKSEDVMETFKTMIEKRCVPNIITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGA 585 (759)
Q Consensus 506 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 585 (759)
+...|+...|++....+++.. +-+...+..-..+|...|.+..|+.=++.+.+. ...+...+..+...+...|+.+.+
T Consensus 165 ~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askL-s~DnTe~~ykis~L~Y~vgd~~~s 242 (504)
T KOG0624|consen 165 ASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKL-SQDNTEGHYKISQLLYTVGDAENS 242 (504)
T ss_pred HhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-cccchHHHHHHHHHHHhhhhHHHH
Confidence 344566666666666666642 224555555566666666666666666665554 233455555666666666666666
Q ss_pred HHHHHHHHHccCCCCchhhHHH---H---------HHHHHhcCCHHHHHHHHHHHHHcCCCCC--HhhH---HHHHHHHH
Q 004362 586 YQLFRRMEDQYKISHTTATYNI---M---------INAFSEKLNFYMAEKLFYEMSEKGCPPD--NYTY---RIMIDSFC 648 (759)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~---l---------~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~---~~l~~~~~ 648 (759)
+...++..+. .|+....|.. + +....+.++|.++++-.++.++. .|. ...+ ..+-.++.
T Consensus 243 L~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~--ep~~~~ir~~~~r~~c~C~~ 318 (504)
T KOG0624|consen 243 LKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN--EPEETMIRYNGFRVLCTCYR 318 (504)
T ss_pred HHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc--CCcccceeeeeeheeeeccc
Confidence 6666666665 4444333311 0 11223455666666666665544 333 1222 22333445
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCcHHHHHHHHHHHHH
Q 004362 649 KTGGINSGYCLLLENIDKGFIPSLSTI-GRVINCLCVDHRVHEAVGFVHLMVQ 700 (759)
Q Consensus 649 ~~g~~~~A~~~~~~~~~~g~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~ 700 (759)
..|++.+|+....+.++ +.|++... -.-..++.-...+|+|+.-|+++.+
T Consensus 319 ~d~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 319 EDEQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred ccCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 55666666666666666 55653332 2344455555666666666666665
No 98
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=99.11 E-value=1.4e-05 Score=82.94 Aligned_cols=518 Identities=15% Similarity=0.102 Sum_probs=277.6
Q ss_pred HhCCChHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCChhHH
Q 004362 51 GFHGNFEEMENLLLEMRMDVDDSLLEGVHIGVMRNYGRRGKVQEAVDVFERMDFYNCEPTVLSYNTIMNILVEYGYFSQV 130 (759)
Q Consensus 51 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 130 (759)
...++|..|.+....+.+..|. ..-+...-+-...+.|+.++|..+++.....+ ..|-.+...+-.+|.+.+..++|
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn--~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPN--ALYAKVLKALSLFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCC--cHHHHHHHHHHHHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHHHHHhhhhHH
Confidence 4678999999999999999988 33333333445679999999999998877555 34778888899999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhh----HHHHHhhchhCCCCCCHHhHHHHHHHHHhcC-C---------
Q 004362 131 HKVYMRMRNKGIVPDVYTFVIRIKSFCRTRRPHV----ALRLLKNMPSQGFEPNAVAYCTLIAGFYEEN-H--------- 196 (759)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~--------- 196 (759)
..+|++..... |+......+..+|.+.+++.. |.+++... +-+...+-++++...... .
T Consensus 97 ~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~-----pk~~yyfWsV~Slilqs~~~~~~~~~~i~ 169 (932)
T KOG2053|consen 97 VHLYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKNF-----PKRAYYFWSVISLILQSIFSENELLDPIL 169 (932)
T ss_pred HHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CcccchHHHHHHHHHHhccCCcccccchh
Confidence 99999999854 888888888999999887776 45555533 334555555555544422 1
Q ss_pred hhHHHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCChhHHHHHHH-HHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004362 197 NVEAYELFDEMLGMG-ISPDIATFNKLIHTLCKKGNVRESEKLFN-KVLKRGVSPNLFTFNMFIQGLCRKGAISEAISLL 274 (759)
Q Consensus 197 ~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 274 (759)
..-|...++.+.+.+ .--+..-...-...+...|.+++|.+++. ...+.-..-+...-+.-+..+...+++.+..++-
T Consensus 170 l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~ 249 (932)
T KOG2053|consen 170 LALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELS 249 (932)
T ss_pred HHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHH
Confidence 123566677776654 21122223333455667889999999984 3333333334445556678888899999999998
Q ss_pred HHHhhCCCCCCcchHHHHHHHHHh----------------CCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHH---cC
Q 004362 275 DSLGREDLTPDVVTYNTLMCGLCK----------------NSKVVEAEYYLHKMVNEGLEPDGFSYNAVIDGYCK---AG 335 (759)
Q Consensus 275 ~~~~~~~~~~~~~~~~~l~~~~~~----------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~---~~ 335 (759)
.++...+ ..| |...+..+.+ .+..+...+...+..... ....|-+-+.+..+ -|
T Consensus 250 ~~Ll~k~-~Dd---y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~---~Rgp~LA~lel~kr~~~~g 322 (932)
T KOG2053|consen 250 SRLLEKG-NDD---YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSK---SRGPYLARLELDKRYKLIG 322 (932)
T ss_pred HHHHHhC-Ccc---hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhccc---ccCcHHHHHHHHHHhcccC
Confidence 8888765 222 4333332111 112222222222222110 12233333333333 35
Q ss_pred ChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHH---hHHHHHHHHHhcCC----
Q 004362 336 MISSADKILNDAIFKGFVPDEFTYCSLINGLCQDGDVDRAMAVYVKALEKGLKP--SIV---LYNTLIKGLSQQGL---- 406 (759)
Q Consensus 336 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~---~~~~l~~~~~~~~~---- 406 (759)
+.+++...|-+- .|..| .+..=+..|...=..+.-..++.......... +.. .+...+......|.
T Consensus 323 d~ee~~~~y~~k--fg~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l 397 (932)
T KOG2053|consen 323 DSEEMLSYYFKK--FGDKP---CCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKL 397 (932)
T ss_pred ChHHHHHHHHHH--hCCCc---HhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccC
Confidence 555554433221 11111 11111222222222222222222222211000 000 01111111111121
Q ss_pred -HHHHHHHHHHHH---hCC------CCCCH---------HHHHHHHHHHHhcCChH---HHHHHHHHHHHCCCCCCHhhH
Q 004362 407 -ILQALQLMNEMS---ESG------CCPDM---------WTYNIVINGLCKMGCVS---DANNLVNDAISKGYIPDIFTF 464 (759)
Q Consensus 407 -~~~a~~~~~~~~---~~~------~~~~~---------~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~ 464 (759)
-+.-..++.+.. +.| .-|+. .+.+.++..+.+.++.. +|+-+++...... +.+..+-
T Consensus 398 ~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~K 476 (932)
T KOG2053|consen 398 PADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTK 476 (932)
T ss_pred ChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHH
Confidence 111122221111 111 11221 23455566676666654 3444444444432 3455555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhc
Q 004362 465 NTLIDGYCKQLKMEIAIEILNTMWSHGVTPDVITYNSLLNGLCKAAKSEDVMETFKTMIEKRCVPNIITYSILGESLCKA 544 (759)
Q Consensus 465 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 544 (759)
-.++..|+-.|-+..|.++|..+.-.++..|...|. +..-+...|++..+...++...+---..-..+-..+..+| +.
T Consensus 477 LlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AY-r~ 554 (932)
T KOG2053|consen 477 LLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRRAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAY-RR 554 (932)
T ss_pred HHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHHHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHH-Hc
Confidence 667777877788888888888776665665554443 2334456677777777777666531011122333344444 44
Q ss_pred CCHHHHHHHH---HHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHH
Q 004362 545 HKITEAFNLL---EEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRME 593 (759)
Q Consensus 545 ~~~~~a~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 593 (759)
|.+.+..++. +++..........+-+..+...+..++.+.-...+..+.
T Consensus 555 g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 555 GAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRGTQLLKLLESMK 606 (932)
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhccc
Confidence 5555544433 222222122223344556666677777777777777665
No 99
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.10 E-value=1.2e-08 Score=99.75 Aligned_cols=231 Identities=10% Similarity=0.028 Sum_probs=144.6
Q ss_pred CCHHHHHHHHhcCCChHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCccHHHHHHHHH
Q 004362 5 VLPKHVAAVVKHQKNPLTALEMFNSVKREDGFKHTLLTYKYMIDKLGFHGNFEEMENLLLEMRMDVDDSLLEGVHIGVMR 84 (759)
Q Consensus 5 l~~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (759)
..|...+-.+.+.|+..+|.-.|+.+..+.| -...+|..|+.+-+..++-..|+..++++.+.+|. +.++...|+.
T Consensus 286 pdPf~eG~~lm~nG~L~~A~LafEAAVkqdP--~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~--NleaLmaLAV 361 (579)
T KOG1125|consen 286 PDPFKEGCNLMKNGDLSEAALAFEAAVKQDP--QHAEAWQKLGITQAENENEQNAISALRRCLELDPT--NLEALMALAV 361 (579)
T ss_pred CChHHHHHHHHhcCCchHHHHHHHHHHhhCh--HHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc--cHHHHHHHHH
Confidence 3566677777777777777777777766643 24566777777777777777777777777777777 7777777777
Q ss_pred HHHhcCChhHHHHHHHHhhhCCCCCCHHHHHH----H-H--HHHHHcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHH
Q 004362 85 NYGRRGKVQEAVDVFERMDFYNCEPTVLSYNT----I-M--NILVEYGYFSQVHKVYMRMRNK-GIVPDVYTFVIRIKSF 156 (759)
Q Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----l-~--~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~ 156 (759)
.|...|.-..|+++++......+ +-...-.. . . ..+.....+....+.|.++... +..+|+.+...|.-.|
T Consensus 362 SytNeg~q~~Al~~L~~Wi~~~p-~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy 440 (579)
T KOG1125|consen 362 SYTNEGLQNQALKMLDKWIRNKP-KYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLY 440 (579)
T ss_pred HHhhhhhHHHHHHHHHHHHHhCc-cchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHH
Confidence 77777777777777776653221 10000000 0 0 0111122233455555555543 3235666666666667
Q ss_pred HccCChhhHHHHHhhchhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCChhHH
Q 004362 157 CRTRRPHVALRLLKNMPSQGFEPNAVAYCTLIAGFYEENHNVEAYELFDEMLGMGISPDI-ATFNKLIHTLCKKGNVRES 235 (759)
Q Consensus 157 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a 235 (759)
...|++++|...|+.++... |.|...||.|...+....+..+|+..|.+.++. .|.- .....|.-.|...|.+++|
T Consensus 441 ~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA 517 (579)
T KOG1125|consen 441 NLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEA 517 (579)
T ss_pred hcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHH
Confidence 77777777777777777665 556667777777777777777777777777764 4442 2333345566677777777
Q ss_pred HHHHHHHh
Q 004362 236 EKLFNKVL 243 (759)
Q Consensus 236 ~~~~~~~~ 243 (759)
...|-.++
T Consensus 518 ~~hlL~AL 525 (579)
T KOG1125|consen 518 VKHLLEAL 525 (579)
T ss_pred HHHHHHHH
Confidence 76665554
No 100
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.09 E-value=2e-07 Score=83.19 Aligned_cols=355 Identities=15% Similarity=0.115 Sum_probs=210.0
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHH-HHH
Q 004362 216 IATFNKLIHTLCKKGNVRESEKLFNKVLKRGVSPNLFTFNMFIQGLCRKGAISEAISLLDSLGREDLTPDVVTYNT-LMC 294 (759)
Q Consensus 216 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~ 294 (759)
..-+...+..+.+..++..|.+++....+... .+....+.+..+|....++..|-..++++... .|...-|.. -..
T Consensus 10 EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p-~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQ 86 (459)
T KOG4340|consen 10 EGEFTAVVYRLIRDARYADAIQLLGSELERSP-RSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQ 86 (459)
T ss_pred CCchHHHHHHHHHHhhHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHH
Confidence 33466777777888888888888887766632 25556677777888888899999998888755 455444443 235
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCChhc--HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCH
Q 004362 295 GLCKNSKVVEAEYYLHKMVNEGLEPDGFS--YNAVIDGYCKAGMISSADKILNDAIFKGFVPDEFTYCSLINGLCQDGDV 372 (759)
Q Consensus 295 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 372 (759)
.+.+.+.+..|+.+...|.+. |+... ...-.....+.+++..+..+.+.....| +..+.+.......+.|++
T Consensus 87 SLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqy 160 (459)
T KOG4340|consen 87 SLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQY 160 (459)
T ss_pred HHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccH
Confidence 667788888888888887653 22211 1111122345677888887777655322 455566666677788999
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH----HHHHHHHHhcCChHHHHHH
Q 004362 373 DRAMAVYVKALEKGLKPSIVLYNTLIKGLSQQGLILQALQLMNEMSESGCCPDMWTY----NIVINGLCKMGCVSDANNL 448 (759)
Q Consensus 373 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~ 448 (759)
+.|.+-|....+.+--.+...|+..+. ..+.+++..|++...++++.|++..+..- ...+.+- ..|+. ..+
T Consensus 161 EaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvr-svgNt---~~l 235 (459)
T KOG4340|consen 161 EAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVR-SVGNT---LVL 235 (459)
T ss_pred HHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchh-cccch---HHH
Confidence 999999988887543335566665554 44677888899888888888764222100 0000000 00000 000
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 004362 449 VNDAISKGYIPDIFTFNTLIDGYCKQLKMEIAIEILNTMWSHG-VTPDVITYNSLLNGLCKAAKSEDVMETFKTMIEKRC 527 (759)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 527 (759)
.... -...+|.-...+.+.++++.|.+.+..|.-+. ...|++|...+.-. ...+++.+..+-++-++..++
T Consensus 236 h~Sa-------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP 307 (459)
T KOG4340|consen 236 HQSA-------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP 307 (459)
T ss_pred HHHH-------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC
Confidence 0000 01223333444567888888888887775331 23456666554432 234556666666666666543
Q ss_pred CCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-ccHHHHHHHHHHHHccCChhhHHHHHHHHH
Q 004362 528 VPNIITYSILGESLCKAHKITEAFNLLEEMENKGLT-LDTVAFGTLINGFCNSGDLDGAYQLFRRME 593 (759)
Q Consensus 528 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 593 (759)
-...||..++-.|++..-++.|..++.+-....+. .+...|+.+=......-..++|.+-+..+.
T Consensus 308 -fP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 308 -FPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred -CChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34678888888888888888888877664332211 122223322222233445666665555443
No 101
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.09 E-value=1.7e-05 Score=77.47 Aligned_cols=186 Identities=15% Similarity=0.159 Sum_probs=137.3
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHH
Q 004362 477 MEIAIEILNTMWSHGVTPDVITYNSLLNGLCKA---AKSEDVMETFKTMIEKRCVPNIITYSILGESLCKAHKITEAFNL 553 (759)
Q Consensus 477 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 553 (759)
.+++..+++..+..-...+..+|..+...--.. .+.+.....++++...-...-..+|...+..-.+..-...|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 345666666655432222333343333221111 12555666777777652222234677788888888889999999
Q ss_pred HHHHHHCCCCc-cHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004362 554 LEEMENKGLTL-DTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKG 632 (759)
Q Consensus 554 ~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 632 (759)
|.++.+.+..+ +..+..+++..|+ .++.+-|.++|+.-... .++++..-...+.-+...++-..|..+|++++..+
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~ 465 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSV 465 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhcc
Confidence 99999876655 5666777776655 69999999999999988 67788888888999999999999999999999987
Q ss_pred CCCC--HhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004362 633 CPPD--NYTYRIMIDSFCKTGGINSGYCLLLENID 665 (759)
Q Consensus 633 ~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 665 (759)
++|+ ..+|..++.--+.-|+.+.++++-++...
T Consensus 466 l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 466 LSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 7777 57999999988999999999999888765
No 102
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.09 E-value=4.6e-07 Score=91.70 Aligned_cols=195 Identities=10% Similarity=-0.040 Sum_probs=104.2
Q ss_pred HHHHHhcCCChHHHHHHHHHhhhcCCCCCCH-HHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHh
Q 004362 10 VAAVVKHQKNPLTALEMFNSVKREDGFKHTL-LTYKYMIDKLGFHGNFEEMENLLLEMRMDVDDSLLEGVHIGVMRNYGR 88 (759)
Q Consensus 10 ~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 88 (759)
++.+....++++.|...+..........++. ......+..+...|++++|.+.++.+....|. +..++.. ...+..
T Consensus 12 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~--~~~a~~~-~~~~~~ 88 (355)
T cd05804 12 AALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR--DLLALKL-HLGAFG 88 (355)
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--cHHHHHH-hHHHHH
Confidence 3334444566666666666554433222222 22222333445667777777777777776665 4444432 222222
Q ss_pred ----cCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhh
Q 004362 89 ----RGKVQEAVDVFERMDFYNCEPTVLSYNTIMNILVEYGYFSQVHKVYMRMRNKGIVPDVYTFVIRIKSFCRTRRPHV 164 (759)
Q Consensus 89 ----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 164 (759)
.+..+.+.+.++.... ..+........+..++...|++++|...+++..+.. +.+...+..+...+...|++++
T Consensus 89 ~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~e 166 (355)
T cd05804 89 LGDFSGMRDHVARVLPLWAP-ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKE 166 (355)
T ss_pred hcccccCchhHHHHHhccCc-CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHH
Confidence 3334444444433111 111222333445556667777777777777777653 3345566666666777777777
Q ss_pred HHHHHhhchhCCC-CCCH--HhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004362 165 ALRLLKNMPSQGF-EPNA--VAYCTLIAGFYEENHNVEAYELFDEMLG 209 (759)
Q Consensus 165 A~~~~~~~~~~~~-~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 209 (759)
|...+++...... .++. ..|..+...+...|++++|+.+|++...
T Consensus 167 A~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 167 GIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 7777776655421 1121 2344566666677777777777777643
No 103
>PF13041 PPR_2: PPR repeat family
Probab=99.08 E-value=4e-10 Score=74.99 Aligned_cols=50 Identities=36% Similarity=0.779 Sum_probs=41.0
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 004362 109 PTVLSYNTIMNILVEYGYFSQVHKVYMRMRNKGIVPDVYTFVIRIKSFCR 158 (759)
Q Consensus 109 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 158 (759)
||+.+||.++.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67788888888888888888888888888888888888888888887764
No 104
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.07 E-value=7.8e-07 Score=90.08 Aligned_cols=198 Identities=10% Similarity=-0.024 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCcc-HHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 004362 41 LTYKYMIDKLGFHGNFEEMENLLLEMRMDVDDSLL-EGVHIGVMRNYGRRGKVQEAVDVFERMDFYNCEPTVLSYNTIMN 119 (759)
Q Consensus 41 ~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 119 (759)
..+..++..+...|+.+.+...+.......+...+ .+.....+..+...|++++|.+.++++.... |.+...+.. ..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~ 84 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HL 84 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hH
Confidence 34444555555556666666666555554433212 2333334555566677777777776665443 333333332 11
Q ss_pred HHHH----cCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChhhHHHHHhhchhCCCCCCHHhHHHHHHHHHhc
Q 004362 120 ILVE----YGYFSQVHKVYMRMRNKGIVPD-VYTFVIRIKSFCRTRRPHVALRLLKNMPSQGFEPNAVAYCTLIAGFYEE 194 (759)
Q Consensus 120 ~~~~----~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 194 (759)
.+.. .+....+.+.+... ....|+ ......+...+...|++++|.+.+++..+.. +.+...+..+...+...
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~ 161 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQ 161 (355)
T ss_pred HHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHc
Confidence 2222 23333333333321 111122 2333344445556666666666666666654 44455556666666666
Q ss_pred CChhHHHHHHHHHHhCCCC-CCh--hhHHHHHHHHHhcCChhHHHHHHHHHh
Q 004362 195 NHNVEAYELFDEMLGMGIS-PDI--ATFNKLIHTLCKKGNVRESEKLFNKVL 243 (759)
Q Consensus 195 ~~~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~ 243 (759)
|++++|...+++....... ++. ..|..+...+...|++++|..++++..
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 6666666666665543211 111 123344555556666666666666654
No 105
>PF13041 PPR_2: PPR repeat family
Probab=99.07 E-value=4e-10 Score=74.98 Aligned_cols=49 Identities=47% Similarity=0.772 Sum_probs=26.4
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 004362 179 PNAVAYCTLIAGFYEENHNVEAYELFDEMLGMGISPDIATFNKLIHTLC 227 (759)
Q Consensus 179 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 227 (759)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4455555555555555555555555555555555555555555555543
No 106
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.05 E-value=1.3e-05 Score=92.44 Aligned_cols=264 Identities=13% Similarity=-0.039 Sum_probs=121.5
Q ss_pred HHHHHccCChhhHHHHHhhchhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCh
Q 004362 153 IKSFCRTRRPHVALRLLKNMPSQGFEPNAVAYCTLIAGFYEENHNVEAYELFDEMLGMGISPDIATFNKLIHTLCKKGNV 232 (759)
Q Consensus 153 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 232 (759)
...+...|++.+|........... .-..............|++..+...++.+.......+..........+...|++
T Consensus 348 a~~~~~~g~~~~Al~~a~~a~d~~--~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~ 425 (903)
T PRK04841 348 AEAWLAQGFPSEAIHHALAAGDAQ--LLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRY 425 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHCCCHH--HHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCH
Confidence 344556666666665444332110 000111112223444566666666655542111111222222333444566788
Q ss_pred hHHHHHHHHHhhCCC------CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCc----chHHHHHHHHHhCC
Q 004362 233 RESEKLFNKVLKRGV------SPNL--FTFNMFIQGLCRKGAISEAISLLDSLGREDLTPDV----VTYNTLMCGLCKNS 300 (759)
Q Consensus 233 ~~a~~~~~~~~~~~~------~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~ 300 (759)
+++...+......-. .+.. .....+...+...|+++.|...+++........+. ...+.+...+...|
T Consensus 426 ~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G 505 (903)
T PRK04841 426 SEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKG 505 (903)
T ss_pred HHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcC
Confidence 888777776643210 1111 11122233445677777777777776542101111 12334444555677
Q ss_pred ChHHHHHHHHHHHHCCC---CC--ChhcHHHHHHHHHHcCChhHHHHHHHHHHhC----CCCC---CcccHHHHHHHHHh
Q 004362 301 KVVEAEYYLHKMVNEGL---EP--DGFSYNAVIDGYCKAGMISSADKILNDAIFK----GFVP---DEFTYCSLINGLCQ 368 (759)
Q Consensus 301 ~~~~a~~~~~~~~~~~~---~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~---~~~~~~~l~~~~~~ 368 (759)
++++|...+.+...... .+ ...++..+...+...|+++.|...+++.... +... ....+..+...+..
T Consensus 506 ~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 585 (903)
T PRK04841 506 ELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWE 585 (903)
T ss_pred CHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence 77777777666553210 01 1123334445556667777776666655432 1110 11122333444555
Q ss_pred cCCHHHHHHHHHHHHHcCC--CC--CHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004362 369 DGDVDRAMAVYVKALEKGL--KP--SIVLYNTLIKGLSQQGLILQALQLMNEMS 418 (759)
Q Consensus 369 ~~~~~~A~~~~~~~~~~~~--~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 418 (759)
.|++++|...+.+...... .+ ....+..+...+...|+++.|...+++..
T Consensus 586 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~ 639 (903)
T PRK04841 586 WARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLE 639 (903)
T ss_pred hcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5666666666665543210 01 12223333444555566666666555543
No 107
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.05 E-value=1.8e-05 Score=77.33 Aligned_cols=182 Identities=9% Similarity=0.094 Sum_probs=133.3
Q ss_pred HHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccC---ChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHH
Q 004362 547 ITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSG---DLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEK 623 (759)
Q Consensus 547 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 623 (759)
.+++..+++..+..-...+..+|..+...-...- ..+.....++++.......+ .-+|..+++.-.+..-+..|..
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~ 387 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARK 387 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHH
Confidence 4667777777776433334444544443222222 36677777887776643333 3567778888888888999999
Q ss_pred HHHHHHHcCCCC-CHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCcHHHHHHHHHHHHHC
Q 004362 624 LFYEMSEKGCPP-DNYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSLSTI-GRVINCLCVDHRVHEAVGFVHLMVQK 701 (759)
Q Consensus 624 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~ 701 (759)
+|.++.+.+..+ +..+..+++. |.-+++.+-|.++|+-.++ --+|.+.+ ...+..+.+.|+-..|..+|++....
T Consensus 388 iF~kaR~~~r~~hhVfVa~A~mE-y~cskD~~~AfrIFeLGLk--kf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 388 IFKKAREDKRTRHHVFVAAALME-YYCSKDKETAFRIFELGLK--KFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHHHHhhccCCcchhhHHHHHHH-HHhcCChhHHHHHHHHHHH--hcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 999999887666 4556666666 4558899999999999987 34554444 67778889999999999999999998
Q ss_pred CCCCc----hHHHHHhc--cccccccchHHHHHHHhc
Q 004362 702 GIVPE----VVNTIFEA--DKREVASPKIVVEDLLKK 732 (759)
Q Consensus 702 ~~~p~----~~~~~~~~--~~~~~~~a~~~~~~~~~~ 732 (759)
++.|+ +|..+++. .-|+...+.++-++....
T Consensus 465 ~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 465 VLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 77777 99999988 779999998888887664
No 108
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.02 E-value=6.2e-09 Score=98.75 Aligned_cols=256 Identities=14% Similarity=0.091 Sum_probs=134.8
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHH
Q 004362 400 GLSQQGLILQALQLMNEMSESGCCPDMWTYNIVINGLCKMGCVSDANNLVNDAISKGYIPDIFTFNTLIDGYCKQLKMEI 479 (759)
Q Consensus 400 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 479 (759)
-+.-.|++..++.-.+ ........+......+.+++...|+++.+. .++.... .|.......+...+....+-+.
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHH
Confidence 3445677777776555 222211112334455667777777665433 3333322 4444444444433333234444
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004362 480 AIEILNTMWSHGVTP-DVITYNSLLNGLCKAAKSEDVMETFKTMIEKRCVPNIITYSILGESLCKAHKITEAFNLLEEME 558 (759)
Q Consensus 480 A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 558 (759)
+..-+++.......+ +..........+...|++++|++++... .+.......+..+.+.++++.|.+.++.|.
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444444333322221 2222222223455567777777766542 245566666777777777777777777776
Q ss_pred HCCCCccHHHH---HHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 004362 559 NKGLTLDTVAF---GTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPP 635 (759)
Q Consensus 559 ~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 635 (759)
+. ..|.... .+++..+.-.+.+.+|..+|+++.+. .++++.+.+.++.+....|++++|.++++++.+.+ +-
T Consensus 159 ~~--~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~ 233 (290)
T PF04733_consen 159 QI--DEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PN 233 (290)
T ss_dssp CC--SCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CC
T ss_pred hc--CCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cC
Confidence 54 2333221 12222222233577777777777666 45667777777777777777777777777776542 22
Q ss_pred CHhhHHHHHHHHHhcCCh-HHHHHHHHHHHhCCCCCCHH
Q 004362 636 DNYTYRIMIDSFCKTGGI-NSGYCLLLENIDKGFIPSLS 673 (759)
Q Consensus 636 ~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~g~~p~~~ 673 (759)
++.++..++.+....|+. +.+.+++.++.. ..|+.+
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~--~~p~h~ 270 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQ--SNPNHP 270 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH--HTTTSH
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHHH--hCCCCh
Confidence 366666666666666666 556666666665 556533
No 109
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.00 E-value=2.2e-07 Score=81.16 Aligned_cols=159 Identities=10% Similarity=0.043 Sum_probs=85.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhc
Q 004362 536 ILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEK 615 (759)
Q Consensus 536 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 615 (759)
.++-+....|+.+.|..+++++.+. +|-+..+-..-+-.+...|.+++|+++|+.+.+. .|.|..++..-+.+....
T Consensus 57 qV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d--dpt~~v~~KRKlAilka~ 133 (289)
T KOG3060|consen 57 QVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYKEAIEYYESLLED--DPTDTVIRKRKLAILKAQ 133 (289)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc--CcchhHHHHHHHHHHHHc
Confidence 3344444555566666666665554 3334443333333444556666666666666655 455555555555555555
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhc---CcHHHH
Q 004362 616 LNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSLSTIG-RVINCLCVD---HRVHEA 691 (759)
Q Consensus 616 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~-~l~~~~~~~---g~~~~A 691 (759)
|+.-+|++.+....+. +..|...|..+...|...|++++|...+++++- +.|.++.+. .+...++-. .+..-|
T Consensus 134 GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll--~~P~n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 134 GKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL--IQPFNPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred CCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 5555666665555554 355566666666666666666666666666655 555444432 333333322 244445
Q ss_pred HHHHHHHHH
Q 004362 692 VGFVHLMVQ 700 (759)
Q Consensus 692 ~~~~~~~~~ 700 (759)
.++|.+.++
T Consensus 211 rkyy~~alk 219 (289)
T KOG3060|consen 211 RKYYERALK 219 (289)
T ss_pred HHHHHHHHH
Confidence 566666555
No 110
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.00 E-value=9.8e-08 Score=96.01 Aligned_cols=221 Identities=14% Similarity=0.028 Sum_probs=182.8
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004362 423 CPDMWTYNIVINGLCKMGCVSDANNLVNDAISKGYIPDIFTFNTLIDGYCKQLKMEIAIEILNTMWSHGVTPDVITYNSL 502 (759)
Q Consensus 423 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 502 (759)
+|--..-..+...+...|-...|..+++++. .|...+.+|+..|+..+|..+..+..+. +|++..|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHh
Confidence 3333344566777888999999999998654 4667888999999999999998888874 6899999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCCh
Q 004362 503 LNGLCKAAKSEDVMETFKTMIEKRCVPNIITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDL 582 (759)
Q Consensus 503 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 582 (759)
+.+....--+++|.++.+....+ .-..++......++++++.+.++.-.+. -+.-..+|..+..+..+.+++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~-nplq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEI-NPLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhc-CccchhHHHhccHHHHHHhhh
Confidence 88877777788888888765432 2223333334578999999999998876 356778899999999999999
Q ss_pred hhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHH
Q 004362 583 DGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCLLLE 662 (759)
Q Consensus 583 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 662 (759)
..|.+.|...... .|++...||++..+|.+.|+..+|...++++.+.+ ..+...|.+.+......|.+++|++.+.+
T Consensus 536 q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 536 QAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred HHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHH
Confidence 9999999999988 99999999999999999999999999999999876 55678888888888999999999999999
Q ss_pred HHh
Q 004362 663 NID 665 (759)
Q Consensus 663 ~~~ 665 (759)
+.+
T Consensus 613 ll~ 615 (777)
T KOG1128|consen 613 LLD 615 (777)
T ss_pred HHH
Confidence 886
No 111
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.00 E-value=1.9e-07 Score=100.49 Aligned_cols=243 Identities=10% Similarity=0.018 Sum_probs=189.8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCC---hhcHHHHHHHHHhcCCHHHHHHHH
Q 004362 479 IAIEILNTMWSHGVTPDVITYNSLLNGLCKAAKSEDVMETFKTMIEK-RCVPN---IITYSILGESLCKAHKITEAFNLL 554 (759)
Q Consensus 479 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~ 554 (759)
.|...-+.++.. +.+...|-..+....+.++.+.|.+++++++.. +++-. ...|.++++.-...|.-+...++|
T Consensus 1443 saeDferlvrss--PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVF 1520 (1710)
T KOG1070|consen 1443 SAEDFERLVRSS--PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVF 1520 (1710)
T ss_pred CHHHHHHHHhcC--CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHH
Confidence 444444444442 445778999999999999999999999999876 22211 125677777777778888999999
Q ss_pred HHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 004362 555 EEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCP 634 (759)
Q Consensus 555 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 634 (759)
+++.+. -..-..|..|...|.+.+.+++|.++++.|.+.++ .....|...+..+.++.+-+.|..+++++++. -
T Consensus 1521 eRAcqy--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--l 1594 (1710)
T KOG1070|consen 1521 ERACQY--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKS--L 1594 (1710)
T ss_pred HHHHHh--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--c
Confidence 999885 33455688899999999999999999999999965 67889999999999999999999999999875 3
Q ss_pred CC---HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCc----
Q 004362 635 PD---NYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPS-LSTIGRVINCLCVDHRVHEAVGFVHLMVQKGIVPE---- 706 (759)
Q Consensus 635 p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---- 706 (759)
|. .....-.+..-++.|+.+.+..+|+..+. -.|. ...|..++..-.+.|+.+.+..+|+++...++.|.
T Consensus 1595 Pk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~--ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKf 1672 (1710)
T KOG1070|consen 1595 PKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLS--AYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKF 1672 (1710)
T ss_pred chhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHh--hCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHH
Confidence 43 33445556677899999999999999987 4564 55677788888999999999999999999999988
Q ss_pred hHHHHHhc--cccccccchHHHHHHHh
Q 004362 707 VVNTIFEA--DKREVASPKIVVEDLLK 731 (759)
Q Consensus 707 ~~~~~~~~--~~~~~~~a~~~~~~~~~ 731 (759)
.+..|+++ ++|+-+.+..+=.++.+
T Consensus 1673 ffKkwLeyEk~~Gde~~vE~VKarA~E 1699 (1710)
T KOG1070|consen 1673 FFKKWLEYEKSHGDEKNVEYVKARAKE 1699 (1710)
T ss_pred HHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 77789998 56665444444344443
No 112
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.00 E-value=1.7e-08 Score=95.73 Aligned_cols=115 Identities=15% Similarity=0.029 Sum_probs=48.2
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcC--CHH
Q 004362 542 CKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKL--NFY 619 (759)
Q Consensus 542 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~ 619 (759)
...|++++|++++... .+.+.....+.+|.+.++++.|.+.++.+.+. ..+...+...-+++....| ++.
T Consensus 113 ~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~~l~qLa~awv~l~~g~e~~~ 184 (290)
T PF04733_consen 113 FHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDSILTQLAEAWVNLATGGEKYQ 184 (290)
T ss_dssp CCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCHHHHHHHHHHHHHHHTTTCCC
T ss_pred HHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHhCchhHH
Confidence 3344555554444321 23334444444555555555555555555433 2222222222222222222 345
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004362 620 MAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCLLLENID 665 (759)
Q Consensus 620 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 665 (759)
+|..+|+++.++ +++++.+.+.++.++...|++++|...++++++
T Consensus 185 ~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~ 229 (290)
T PF04733_consen 185 DAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE 229 (290)
T ss_dssp HHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 555555554433 234444455555555555555555555555444
No 113
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.99 E-value=1.5e-07 Score=94.76 Aligned_cols=222 Identities=14% Similarity=0.081 Sum_probs=181.8
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHH
Q 004362 456 GYIPDIFTFNTLIDGYCKQLKMEIAIEILNTMWSHGVTPDVITYNSLLNGLCKAAKSEDVMETFKTMIEKRCVPNIITYS 535 (759)
Q Consensus 456 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 535 (759)
+.+|--..-..+...+.+.|-...|..++++.. .|...+.+|...|+..+|..+..+..++ +|++..|.
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc 461 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYC 461 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHH
Confidence 334444555667888899999999999998765 4677888999999999999988888774 68999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhc
Q 004362 536 ILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEK 615 (759)
Q Consensus 536 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 615 (759)
.++.......-+++|.++.+..... +-..+.....+.++++++.+.|+...+. .|-...+|..++.+..+.
T Consensus 462 ~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~--nplq~~~wf~~G~~ALql 532 (777)
T KOG1128|consen 462 LLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEI--NPLQLGTWFGLGCAALQL 532 (777)
T ss_pred HhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhc--CccchhHHHhccHHHHHH
Confidence 9999988888889999888775432 2223333445589999999999999998 888899999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHH
Q 004362 616 LNFYMAEKLFYEMSEKGCPPD-NYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSLSTIGRVINCLCVDHRVHEAVGF 694 (759)
Q Consensus 616 g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 694 (759)
+++..|.+.|...+. +.|| ...|+++..+|.+.|+..+|...+.++++.... +...|....-....-|.+++|++.
T Consensus 533 ek~q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A 609 (777)
T KOG1128|consen 533 EKEQAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKA 609 (777)
T ss_pred hhhHHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHH
Confidence 999999999999995 4777 889999999999999999999999999996522 333444444455788999999999
Q ss_pred HHHHHH
Q 004362 695 VHLMVQ 700 (759)
Q Consensus 695 ~~~~~~ 700 (759)
++++..
T Consensus 610 ~~rll~ 615 (777)
T KOG1128|consen 610 YHRLLD 615 (777)
T ss_pred HHHHHH
Confidence 999876
No 114
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.96 E-value=3.4e-06 Score=97.23 Aligned_cols=333 Identities=12% Similarity=0.042 Sum_probs=208.8
Q ss_pred HHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC------CC--HHhHHHHHHHHH
Q 004362 331 YCKAGMISSADKILNDAIFKGFVPDEFTYCSLINGLCQDGDVDRAMAVYVKALEKGLK------PS--IVLYNTLIKGLS 402 (759)
Q Consensus 331 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~--~~~~~~l~~~~~ 402 (759)
....|+++.+...++.+.......++.........+...|+++++...+......-.. +. ......+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 3455777776666655422111123333444555667788999999888877543111 11 112222334456
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHCCC---CC--CHhhHHHHHHHHHh
Q 004362 403 QQGLILQALQLMNEMSESGCCPDM----WTYNIVINGLCKMGCVSDANNLVNDAISKGY---IP--DIFTFNTLIDGYCK 473 (759)
Q Consensus 403 ~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~ 473 (759)
..|++++|...+++....-...+. .....+...+...|++++|...+.+...... .+ ...+...+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 789999999999887763111121 2344555667789999999998888764311 11 12344556667888
Q ss_pred cCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCC--ChhcHHHHHHHHH
Q 004362 474 QLKMEIAIEILNTMWSH----GVT--P-DVITYNSLLNGLCKAAKSEDVMETFKTMIEK--RCVP--NIITYSILGESLC 542 (759)
Q Consensus 474 ~~~~~~A~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~--~~~~~~~l~~~~~ 542 (759)
.|+++.|...+++.... +.. + ....+..+...+...|++++|...+.+.... ...+ ....+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 99999999988876642 211 1 2233445556677789999999988887653 1112 2234445667778
Q ss_pred hcCCHHHHHHHHHHHHHC--CCCccHH--HH--HHHHHHHHccCChhhHHHHHHHHHHccCCCCchh----hHHHHHHHH
Q 004362 543 KAHKITEAFNLLEEMENK--GLTLDTV--AF--GTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTA----TYNIMINAF 612 (759)
Q Consensus 543 ~~~~~~~a~~~~~~~~~~--~~~~~~~--~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~l~~~~ 612 (759)
..|++++|...+..+... ....... .. ...+..+...|+.+.|...+...... .+.... .+..++.++
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP--EFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC--CCccchhHHHHHHHHHHHH
Confidence 899999999998887642 1111111 11 11224455688999999887775542 111111 145677888
Q ss_pred HhcCCHHHHHHHHHHHHHc----CCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004362 613 SEKLNFYMAEKLFYEMSEK----GCPPD-NYTYRIMIDSFCKTGGINSGYCLLLENID 665 (759)
Q Consensus 613 ~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 665 (759)
...|++++|..+++++... +..++ ..++..++.++...|+.++|...+.++++
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8999999999999988753 22233 34667777889999999999999999987
No 115
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.95 E-value=4.5e-08 Score=82.77 Aligned_cols=118 Identities=7% Similarity=-0.059 Sum_probs=88.1
Q ss_pred HHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004362 552 NLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEK 631 (759)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 631 (759)
.++++.++. .|+ .+......+...|++++|...|+.+... .|.+...|..++.++...|++++|+..|+++.+.
T Consensus 14 ~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMA--QPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 445555543 233 3555677777888888888888888877 7888888888888888888888888888888865
Q ss_pred CCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 004362 632 GCPPDNYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSLSTIGRV 678 (759)
Q Consensus 632 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 678 (759)
. +.+...+..++.++...|++++|+..|+++++ +.|++..+...
T Consensus 88 ~-p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~--~~p~~~~~~~~ 131 (144)
T PRK15359 88 D-ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIK--MSYADASWSEI 131 (144)
T ss_pred C-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHHH
Confidence 3 33477888888888888888888888888888 77876666543
No 116
>PLN02789 farnesyltranstransferase
Probab=98.94 E-value=5.8e-07 Score=86.61 Aligned_cols=194 Identities=8% Similarity=0.004 Sum_probs=96.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhc
Q 004362 466 TLIDGYCKQLKMEIAIEILNTMWSHGVTPDVITYNSLLNGLCKAA-KSEDVMETFKTMIEKRCVPNIITYSILGESLCKA 544 (759)
Q Consensus 466 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 544 (759)
.+-..+...+..++|+.+..+++..+. -+..+|+....++...| ++++++..++++.+.+. .+..+|......+.+.
T Consensus 42 ~~ra~l~~~e~serAL~lt~~aI~lnP-~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l 119 (320)
T PLN02789 42 YFRAVYASDERSPRALDLTADVIRLNP-GNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKL 119 (320)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHc
Confidence 333444455566666666666665421 13344554444444444 35666666666655432 2334454444444444
Q ss_pred CCH--HHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhc---CCH-
Q 004362 545 HKI--TEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEK---LNF- 618 (759)
Q Consensus 545 ~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~- 618 (759)
|+. +++..+++.+++. -+-+..+|.....++...|+++++++.++++++. .|.+..+|+..+.++... |..
T Consensus 120 ~~~~~~~el~~~~kal~~-dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~--d~~N~sAW~~R~~vl~~~~~l~~~~ 196 (320)
T PLN02789 120 GPDAANKELEFTRKILSL-DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE--DVRNNSAWNQRYFVITRSPLLGGLE 196 (320)
T ss_pred CchhhHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--CCCchhHHHHHHHHHHhcccccccc
Confidence 432 4455555555544 2334555555555555555666666666666555 555555555555554433 111
Q ss_pred ---HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc----CChHHHHHHHHHHHh
Q 004362 619 ---YMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKT----GGINSGYCLLLENID 665 (759)
Q Consensus 619 ---~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~ 665 (759)
++++.+..+++... |-|...|+.+...+... ++..+|...+.++++
T Consensus 197 ~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 197 AMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred ccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 34455554554331 22355555555555442 233445555555444
No 117
>PLN02789 farnesyltranstransferase
Probab=98.94 E-value=1.1e-06 Score=84.63 Aligned_cols=185 Identities=9% Similarity=0.015 Sum_probs=95.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCCh--hhH
Q 004362 509 AAKSEDVMETFKTMIEKRCVPNIITYSILGESLCKAH-KITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDL--DGA 585 (759)
Q Consensus 509 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~A 585 (759)
.++.++|+..+.++++.. +-+..+|.....++...| ++++++..++++... .+.+..+|+.-..++.+.|+. +++
T Consensus 50 ~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~-npknyqaW~~R~~~l~~l~~~~~~~e 127 (320)
T PLN02789 50 DERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAED-NPKNYQIWHHRRWLAEKLGPDAANKE 127 (320)
T ss_pred CCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH-CCcchHHhHHHHHHHHHcCchhhHHH
Confidence 345556666666665542 113334444444455555 456666666666654 233444455444444444442 455
Q ss_pred HHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc---CCh----HHHHH
Q 004362 586 YQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKT---GGI----NSGYC 658 (759)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~----~~A~~ 658 (759)
+.+++++.+. .|.+.++|+..+.++...|+++++++.+.++++.+ +.|..+|+..+.++... |.+ ++++.
T Consensus 128 l~~~~kal~~--dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~ 204 (320)
T PLN02789 128 LEFTRKILSL--DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELK 204 (320)
T ss_pred HHHHHHHHHh--CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHHHHH
Confidence 6666666655 56666666666666666666666666666666543 23355555555544433 212 34555
Q ss_pred HHHHHHhCCCCCCHHHH-HHHHHHHHh----cCcHHHHHHHHHHHHH
Q 004362 659 LLLENIDKGFIPSLSTI-GRVINCLCV----DHRVHEAVGFVHLMVQ 700 (759)
Q Consensus 659 ~~~~~~~~g~~p~~~~~-~~l~~~~~~----~g~~~~A~~~~~~~~~ 700 (759)
+..+++. ..|++... ..+...+.. .++..+|.+.+.+...
T Consensus 205 y~~~aI~--~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 205 YTIDAIL--ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred HHHHHHH--hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 5656665 55544333 233333333 1334456666555544
No 118
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.93 E-value=6.1e-07 Score=96.69 Aligned_cols=233 Identities=11% Similarity=0.084 Sum_probs=158.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004362 425 DMWTYNIVINGLCKMGCVSDANNLVNDAISK-GYI---PDIFTFNTLIDGYCKQLKMEIAIEILNTMWSHGVTPDVITYN 500 (759)
Q Consensus 425 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 500 (759)
+...|...|......++.++|+++.++++.. ++. --...|.++++.-..-|.-+...++|+++.+.. -....|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 3456677777777788888888888777653 111 123466666666666777777788888877752 2345567
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc--cHHHHHHHHHHHHc
Q 004362 501 SLLNGLCKAAKSEDVMETFKTMIEKRCVPNIITYSILGESLCKAHKITEAFNLLEEMENKGLTL--DTVAFGTLINGFCN 578 (759)
Q Consensus 501 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~ 578 (759)
.|...|.+.++.++|.++++.|.++ +.-....|...+..+.+..+-+.|..+++++++. .|- ........+..-.+
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~-lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS-LPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh-cchhhhHHHHHHHHHHHhh
Confidence 7777888888888888888888876 2345667777788888877778888888887765 222 34445556666677
Q ss_pred cCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HhhHHHHHHHHHhcCChHHH
Q 004362 579 SGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPD--NYTYRIMIDSFCKTGGINSG 656 (759)
Q Consensus 579 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A 656 (759)
.|+.+.+..+|+..... .|.-...|+.+++.-.++|+.+.+..+|+++.+.++.|. -..|...+.---..|+-+.+
T Consensus 1613 ~GDaeRGRtlfEgll~a--yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSA--YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred cCCchhhHHHHHHHHhh--CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhH
Confidence 78888888888887777 677777888888888888888888888888887777765 34455555544445654444
Q ss_pred HHHHHHH
Q 004362 657 YCLLLEN 663 (759)
Q Consensus 657 ~~~~~~~ 663 (759)
..+=.++
T Consensus 1691 E~VKarA 1697 (1710)
T KOG1070|consen 1691 EYVKARA 1697 (1710)
T ss_pred HHHHHHH
Confidence 4333333
No 119
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.93 E-value=1.4e-07 Score=83.41 Aligned_cols=156 Identities=13% Similarity=0.113 Sum_probs=82.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHh
Q 004362 535 SILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSE 614 (759)
Q Consensus 535 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 614 (759)
..+...+...|+-+....+....... .+.|.......+....+.|++..|+..++++... .|+|...|+.++.+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l--~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL--APTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc--CCCChhhhhHHHHHHHH
Confidence 44444555555555555555444332 2334444444555555566666666666665555 55566666666666666
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCcHHHHH
Q 004362 615 KLNFYMAEKLFYEMSEKGCPPD-NYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSLSTI-GRVINCLCVDHRVHEAV 692 (759)
Q Consensus 615 ~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~-~~l~~~~~~~g~~~~A~ 692 (759)
.|+.++|..-|.++.+. .|+ +..++.++-.+.-.|+++.|..++.++.. ..+.+... ..+.-.....|++++|.
T Consensus 147 ~Gr~~~Ar~ay~qAl~L--~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l--~~~ad~~v~~NLAl~~~~~g~~~~A~ 222 (257)
T COG5010 147 LGRFDEARRAYRQALEL--APNEPSIANNLGMSLLLRGDLEDAETLLLPAYL--SPAADSRVRQNLALVVGLQGDFREAE 222 (257)
T ss_pred ccChhHHHHHHHHHHHh--ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHh--CCCCchHHHHHHHHHHhhcCChHHHH
Confidence 66666666666655543 333 55555555555566666666666655555 33322222 23333334556666555
Q ss_pred HHHHH
Q 004362 693 GFVHL 697 (759)
Q Consensus 693 ~~~~~ 697 (759)
++...
T Consensus 223 ~i~~~ 227 (257)
T COG5010 223 DIAVQ 227 (257)
T ss_pred hhccc
Confidence 54443
No 120
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.93 E-value=2.2e-07 Score=83.27 Aligned_cols=122 Identities=7% Similarity=0.053 Sum_probs=90.1
Q ss_pred cCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHH-HhcCC--HHH
Q 004362 544 AHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAF-SEKLN--FYM 620 (759)
Q Consensus 544 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~ 620 (759)
.++.+++...++..++. -+.+...|..+...|...|++++|...|+++... .|++...+..++.++ ...|+ .++
T Consensus 52 ~~~~~~~i~~l~~~L~~-~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA-NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHH
Confidence 45566777777777665 3567777888888888888888888888888877 777888888888764 56666 478
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 004362 621 AEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPS 671 (759)
Q Consensus 621 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 671 (759)
|.++++++++.+ +.+..++..++..+...|++++|+..|+++++ +.|.
T Consensus 129 A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~--l~~~ 176 (198)
T PRK10370 129 TREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLD--LNSP 176 (198)
T ss_pred HHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCC
Confidence 888888888653 33467777777788888888888888888877 4443
No 121
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.90 E-value=1.9e-07 Score=87.93 Aligned_cols=182 Identities=8% Similarity=-0.018 Sum_probs=104.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh---hcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccH---HH
Q 004362 495 DVITYNSLLNGLCKAAKSEDVMETFKTMIEKRCVPNI---ITYSILGESLCKAHKITEAFNLLEEMENKGLTLDT---VA 568 (759)
Q Consensus 495 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~ 568 (759)
....+..++..+...|++++|...|+++.... +.+. ..+..++.++...|++++|...++++.+.. +.+. ..
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCchHHH
Confidence 44455556666666666666666666666542 1111 244556666666666666666666666542 1111 13
Q ss_pred HHHHHHHHHcc--------CChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhH
Q 004362 569 FGTLINGFCNS--------GDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTY 640 (759)
Q Consensus 569 ~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 640 (759)
+..+..++... |++++|++.|+.+... .|.+...+..+.......+ .. ....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~~~~----------~~--------~~~~ 169 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDYLRN----------RL--------AGKE 169 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHHHH----------HH--------HHHH
Confidence 44444444433 5566666666666655 4444333322221110000 00 0011
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 004362 641 RIMIDSFCKTGGINSGYCLLLENIDKGFIPS----LSTIGRVINCLCVDHRVHEAVGFVHLMVQ 700 (759)
Q Consensus 641 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 700 (759)
..++..+...|++++|+..++++++ ..|+ ...+..+...+...|++++|.++++.+..
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVE--NYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHH--HCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 2456677888999999999999887 3333 34556677777888999999998888765
No 122
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.87 E-value=3.9e-07 Score=80.62 Aligned_cols=153 Identities=12% Similarity=0.082 Sum_probs=69.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCC
Q 004362 502 LLNGLCKAAKSEDVMETFKTMIEKRCVPNIITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGD 581 (759)
Q Consensus 502 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 581 (759)
+...+...|+-+....+........ +.+.......+....+.|++..|...++++... -++|...|+.+.-+|.+.|+
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr 149 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGR 149 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccC
Confidence 3344444444444444444332221 112223333444444455555555555554443 24444555555555555555
Q ss_pred hhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHH
Q 004362 582 LDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCL 659 (759)
Q Consensus 582 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 659 (759)
.+.|..-|.+..+. .|.++..+++++..|.-.|+++.|..++......+ +-|..+-..|...-...|++++|..+
T Consensus 150 ~~~Ar~ay~qAl~L--~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 150 FDEARRAYRQALEL--APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred hhHHHHHHHHHHHh--ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhh
Confidence 55555555555444 44444444555555555555555555554444331 11344444444444445555554443
No 123
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.87 E-value=7.8e-07 Score=94.71 Aligned_cols=135 Identities=13% Similarity=0.141 Sum_probs=103.3
Q ss_pred CCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHH
Q 004362 527 CVPNIITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYN 606 (759)
Q Consensus 527 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 606 (759)
...+...+..|+.+..+.|++++|..+++.+.+. .|.+......++..+.+.+++++|...+++.... .|++.....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~-~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~ 158 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR-FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREIL 158 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh-CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHH
Confidence 3445777777888888888888888888888775 3445566677777888888888888888888877 777888888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004362 607 IMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCLLLENID 665 (759)
Q Consensus 607 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 665 (759)
.++.++...|++++|+.+|+++...+ +.+..++..++.++...|+.++|...|+++++
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88888888888888888888887632 23377788888888888888888888888876
No 124
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.84 E-value=5e-07 Score=85.05 Aligned_cols=187 Identities=12% Similarity=-0.006 Sum_probs=132.7
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh---
Q 004362 458 IPDIFTFNTLIDGYCKQLKMEIAIEILNTMWSHGVT-P-DVITYNSLLNGLCKAAKSEDVMETFKTMIEKRCVPNII--- 532 (759)
Q Consensus 458 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--- 532 (759)
......+..++..+...|+++.|...|+++...... | ....+..+..++...|++++|+..++++++.... +..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN-HPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CCchHH
Confidence 345667788888899999999999999999886321 1 1246777888999999999999999999986421 222
Q ss_pred cHHHHHHHHHhc--------CCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhh
Q 004362 533 TYSILGESLCKA--------HKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTAT 604 (759)
Q Consensus 533 ~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 604 (759)
++..++.++... |++++|.+.++.+.+. .+.+...+..+..... ... .. ...
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~a~~~~~~----~~~-------~~--------~~~ 168 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR-YPNSEYAPDAKKRMDY----LRN-------RL--------AGK 168 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH-CCCChhHHHHHHHHHH----HHH-------HH--------HHH
Confidence 466666777654 7889999999999876 2333333322221111 000 00 112
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CC-CHhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004362 605 YNIMINAFSEKLNFYMAEKLFYEMSEKGC-PP-DNYTYRIMIDSFCKTGGINSGYCLLLENID 665 (759)
Q Consensus 605 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 665 (759)
...++..+...|++.+|+..++++++..- .| ....+..++.++...|++++|..+++.+..
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 23577788899999999999999886521 12 256888899999999999999998888776
No 125
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.84 E-value=3.9e-07 Score=81.63 Aligned_cols=146 Identities=6% Similarity=0.022 Sum_probs=113.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCC
Q 004362 538 GESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLN 617 (759)
Q Consensus 538 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 617 (759)
+..|...|+++.+....+.+.. |. ..+...++.++++..+++.... .|++...|..++..|...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCC
Confidence 3456777887776544433221 11 0122367788999999999988 89999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHhhHHHHHHHH-HhcCC--hHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCcHHHHHH
Q 004362 618 FYMAEKLFYEMSEKGCPPDNYTYRIMIDSF-CKTGG--INSGYCLLLENIDKGFIPSLSTI-GRVINCLCVDHRVHEAVG 693 (759)
Q Consensus 618 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~g~~p~~~~~-~~l~~~~~~~g~~~~A~~ 693 (759)
+++|+..|+++.+.. +.+...+..++.++ ...|+ .++|..+++++++ ..|++... ..+...+.+.|++++|+.
T Consensus 89 ~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~--~dP~~~~al~~LA~~~~~~g~~~~Ai~ 165 (198)
T PRK10370 89 YDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALA--LDANEVTALMLLASDAFMQADYAQAIE 165 (198)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH--hCCCChhHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999653 33488888888864 67777 5999999999999 88865554 455555689999999999
Q ss_pred HHHHHHH
Q 004362 694 FVHLMVQ 700 (759)
Q Consensus 694 ~~~~~~~ 700 (759)
.++++.+
T Consensus 166 ~~~~aL~ 172 (198)
T PRK10370 166 LWQKVLD 172 (198)
T ss_pred HHHHHHh
Confidence 9999987
No 126
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.80 E-value=6.3e-06 Score=72.36 Aligned_cols=188 Identities=10% Similarity=0.120 Sum_probs=137.0
Q ss_pred CCHHHHHHHHHHHHHC---C-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHH
Q 004362 475 LKMEIAIEILNTMWSH---G-VTPDVI-TYNSLLNGLCKAAKSEDVMETFKTMIEKRCVPNIITYSILGESLCKAHKITE 549 (759)
Q Consensus 475 ~~~~~A~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 549 (759)
.+.++..+++..+... | ..++.. .+..++-+....|+.+.|..+++.+..+- +-+...-..-+..+...|++++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhh
Confidence 3455555555555432 2 233432 34555566677888889999999888763 3333343334445567789999
Q ss_pred HHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004362 550 AFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMS 629 (759)
Q Consensus 550 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 629 (759)
|+++++.+++.+ |.|..++..-+.+....|+.-+|++-+....+. .+.|..+|..++..|...|++++|.-.+++++
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 999999998864 666777776677777788888999999988888 78899999999999999999999999999988
Q ss_pred HcCCCC-CHhhHHHHHHHHHhcC---ChHHHHHHHHHHHhCCCCC
Q 004362 630 EKGCPP-DNYTYRIMIDSFCKTG---GINSGYCLLLENIDKGFIP 670 (759)
Q Consensus 630 ~~~~~p-~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~g~~p 670 (759)
-. .| ++..+..++..++..| +++-|.++|.++++ +.|
T Consensus 182 l~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk--l~~ 222 (289)
T KOG3060|consen 182 LI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK--LNP 222 (289)
T ss_pred Hc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH--hCh
Confidence 44 45 4666777777666554 56778999999999 777
No 127
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.77 E-value=5.3e-07 Score=76.30 Aligned_cols=123 Identities=9% Similarity=-0.068 Sum_probs=95.0
Q ss_pred HHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHcc
Q 004362 517 ETFKTMIEKRCVPNIITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQY 596 (759)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 596 (759)
.++++.++. .|+ .+...+.++...|++++|...|+.+... -+.+...+..+..++...|++++|+..|+++...
T Consensus 14 ~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~-~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l- 87 (144)
T PRK15359 14 DILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMA-QPWSWRAHIALAGTWMMLKEYTTAINFYGHALML- 87 (144)
T ss_pred HHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-
Confidence 345555543 233 3556777888888999999999888876 3557888888888899999999999999999887
Q ss_pred CCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHH
Q 004362 597 KISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPD-NYTYRIMIDSFC 648 (759)
Q Consensus 597 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 648 (759)
.|.++..+..++.++...|++++|+..|+++++. .|+ +..|.....++.
T Consensus 88 -~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~--~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 88 -DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM--SYADASWSEIRQNAQI 137 (144)
T ss_pred -CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHH
Confidence 8888899999999999999999999999998865 455 555555554443
No 128
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.76 E-value=8.3e-07 Score=94.51 Aligned_cols=175 Identities=12% Similarity=0.008 Sum_probs=134.7
Q ss_pred HHHHHhcCCChHHHHHHHHHhhhc-CCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHh
Q 004362 10 VAAVVKHQKNPLTALEMFNSVKRE-DGFKHTLLTYKYMIDKLGFHGNFEEMENLLLEMRMDVDDSLLEGVHIGVMRNYGR 88 (759)
Q Consensus 10 ~~~~l~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 88 (759)
+..++.+.+.+..+..-+-.+... ..+..++..+..|+.+..+.|++++|+.+++.+....|. ...++..++..+.+
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd--~~~a~~~~a~~L~~ 132 (694)
T PRK15179 55 ARQVLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD--SSEAFILMLRGVKR 132 (694)
T ss_pred HHHHHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC--cHHHHHHHHHHHHH
Confidence 344555555443333333332221 235567888899999999999999999999999999988 88899999999999
Q ss_pred cCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHH
Q 004362 89 RGKVQEAVDVFERMDFYNCEPTVLSYNTIMNILVEYGYFSQVHKVYMRMRNKGIVPDVYTFVIRIKSFCRTRRPHVALRL 168 (759)
Q Consensus 89 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 168 (759)
.+++++|+..+++..... +.+......+..++.+.|++++|..+|+++...+ +-+..++..+..++...|+.++|...
T Consensus 133 ~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~ 210 (694)
T PRK15179 133 QQGIEAGRAEIELYFSGG-SSSAREILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDV 210 (694)
T ss_pred hccHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999988665 5667778888889999999999999999999843 33478888899999999999999999
Q ss_pred HhhchhCCCCCCHHhHHHHHH
Q 004362 169 LKNMPSQGFEPNAVAYCTLIA 189 (759)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~l~~ 189 (759)
|+...... .+-...|+..+.
T Consensus 211 ~~~a~~~~-~~~~~~~~~~~~ 230 (694)
T PRK15179 211 LQAGLDAI-GDGARKLTRRLV 230 (694)
T ss_pred HHHHHHhh-CcchHHHHHHHH
Confidence 99887763 344566665544
No 129
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.74 E-value=3.9e-07 Score=77.09 Aligned_cols=117 Identities=13% Similarity=0.070 Sum_probs=84.2
Q ss_pred HHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 004362 554 LEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGC 633 (759)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 633 (759)
+++++.. .+.+......++..+...|++++|...|+.+... .|.++..+..++.++...|++++|...++++.+.+
T Consensus 6 ~~~~l~~-~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~- 81 (135)
T TIGR02552 6 LKDLLGL-DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD- 81 (135)
T ss_pred HHHHHcC-ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 4444443 1224455666677777788888888888887776 67777888888888888888888888888877553
Q ss_pred CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 004362 634 PPDNYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSLSTIG 676 (759)
Q Consensus 634 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 676 (759)
+.+...+..++.++...|++++|+..++++++ +.|+...+.
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~ 122 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIE--ICGENPEYS 122 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hccccchHH
Confidence 34467777777888888888888888888888 667665543
No 130
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.73 E-value=1.5e-06 Score=93.29 Aligned_cols=205 Identities=9% Similarity=0.023 Sum_probs=148.1
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHH
Q 004362 459 PDIFTFNTLIDGYCKQLKMEIAIEILNTMWSHGVTPD-VITYNSLLNGLCKAAKSEDVMETFKTMIEKRCVPNIITYSIL 537 (759)
Q Consensus 459 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 537 (759)
.+...+..|+..|...+++++|.++.+...+. .|+ ...|..+...+.+.++..++..+ . +
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~---------------~ 89 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--N---------------L 89 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--h---------------h
Confidence 35677888999999999999999999977775 344 33444444466667766555544 2 2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCC
Q 004362 538 GESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLN 617 (759)
Q Consensus 538 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 617 (759)
+.......++.-...++..+.+ ...+..++..++.+|.+.|+.++|...|+++.+. .|.++.+.|.++..|... +
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~--~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~--D~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILL--YGENKLALRTLAEAYAKLNENKKLKGVWERLVKA--DRDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred hhhcccccchhHHHHHHHHHHh--hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHh-h
Confidence 3333344455444555555555 3345568889999999999999999999999999 799999999999999999 9
Q ss_pred HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH---------------------H
Q 004362 618 FYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSLSTI---------------------G 676 (759)
Q Consensus 618 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~---------------------~ 676 (759)
+++|.+++.+++.. +...+++..+..+|++++. ..|+.... .
T Consensus 165 L~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~ 227 (906)
T PRK14720 165 KEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKVLGHREFTRLVGLLE 227 (906)
T ss_pred HHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHh--cCcccchHHHHHHHHHHhhhccchhHHHHH
Confidence 99999999998865 4455566667777777666 44543222 2
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHCCCCCc
Q 004362 677 RVINCLCVDHRVHEAVGFVHLMVQKGIVPE 706 (759)
Q Consensus 677 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 706 (759)
-+...|-..++|++++.+++.+++ ..|+
T Consensus 228 ~l~~~y~~~~~~~~~i~iLK~iL~--~~~~ 255 (906)
T PRK14720 228 DLYEPYKALEDWDEVIYILKKILE--HDNK 255 (906)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHh--cCCc
Confidence 222344566789999999999998 6676
No 131
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.72 E-value=7.3e-06 Score=79.35 Aligned_cols=116 Identities=9% Similarity=0.051 Sum_probs=66.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHH
Q 004362 540 SLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFY 619 (759)
Q Consensus 540 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 619 (759)
.+...|++++|+..+..++.. .|.++..+......+.+.++.++|.+.++++... .|........++.+|.+.|++.
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChH
Confidence 334455566666666665554 3444444555555566666666666666666655 5555555556666666666666
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHH
Q 004362 620 MAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCL 659 (759)
Q Consensus 620 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 659 (759)
+|+.+++...... +.|+..|..|..+|...|+..++...
T Consensus 392 eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A 430 (484)
T COG4783 392 EAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLA 430 (484)
T ss_pred HHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHH
Confidence 6666666555432 33456666666666666655555443
No 132
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.60 E-value=1.2e-05 Score=77.99 Aligned_cols=174 Identities=11% Similarity=-0.025 Sum_probs=139.3
Q ss_pred cHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HhhHHHH
Q 004362 565 DTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPD-NYTYRIM 643 (759)
Q Consensus 565 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l 643 (759)
-........-.+...|++++|+..++.+... .|+|+..+...+..+...++.++|.+.+++++.. .|+ ...+.++
T Consensus 305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~ 380 (484)
T COG4783 305 GLAAQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNL 380 (484)
T ss_pred chHHHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHH
Confidence 3344455555677889999999999999988 8999999999999999999999999999999965 677 7888899
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCchHHHHHhccccccccc
Q 004362 644 IDSFCKTGGINSGYCLLLENIDKGFIPS-LSTIGRVINCLCVDHRVHEAVGFVHLMVQKGIVPEVVNTIFEADKREVASP 722 (759)
Q Consensus 644 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~a 722 (759)
+.++.+.|+..+|+.++++... -.|+ ...|..+...|...|+..+|...+-++.. -.|++++|
T Consensus 381 a~all~~g~~~eai~~L~~~~~--~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~--------------~~G~~~~A 444 (484)
T COG4783 381 AQALLKGGKPQEAIRILNRYLF--NDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA--------------LAGRLEQA 444 (484)
T ss_pred HHHHHhcCChHHHHHHHHHHhh--cCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH--------------hCCCHHHH
Confidence 9999999999999999999988 5565 55667788888999999999988887754 46788899
Q ss_pred hHHHHHHHhcCCC--chHH-HHHHHhhhhhhhhhhhhcC
Q 004362 723 KIVVEDLLKKSHI--TYYA-YELLFDGIRDKKLLKKKAS 758 (759)
Q Consensus 723 ~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~ 758 (759)
...+.++.+..-. |+.. .+..++.++..+...++..
T Consensus 445 ~~~l~~A~~~~~~~~~~~aR~dari~~~~~~~~~~k~~~ 483 (484)
T COG4783 445 IIFLMRASQQVKLGFPDWARADARIDQLRQQNEEFKPYT 483 (484)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9998888886433 4433 4455666666555555443
No 133
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.57 E-value=1.4e-06 Score=73.69 Aligned_cols=113 Identities=12% Similarity=0.046 Sum_probs=93.4
Q ss_pred HHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 004362 587 QLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCLLLENIDK 666 (759)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 666 (759)
..++++... .|.+......++..+...|++++|.+.++++.+.+ +.+...|..++.++...|++++|..+++++++
T Consensus 4 ~~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~- 79 (135)
T TIGR02552 4 ATLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAA- 79 (135)
T ss_pred hhHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 356666666 67777888889999999999999999999998753 44688899999999999999999999999998
Q ss_pred CCCCCH-HHHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCc
Q 004362 667 GFIPSL-STIGRVINCLCVDHRVHEAVGFVHLMVQKGIVPE 706 (759)
Q Consensus 667 g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 706 (759)
..|++ ..+..+...+...|++++|..++++..+ ..|+
T Consensus 80 -~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~ 117 (135)
T TIGR02552 80 -LDPDDPRPYFHAAECLLALGEPESALKALDLAIE--ICGE 117 (135)
T ss_pred -cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hccc
Confidence 66764 5555666667899999999999999988 4444
No 134
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.55 E-value=2.4e-05 Score=84.34 Aligned_cols=238 Identities=10% Similarity=0.070 Sum_probs=147.1
Q ss_pred ChhcHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 004362 320 DGFSYNAVIDGYCKAGMISSADKILNDAIFKGFVPDEFTYCSLINGLCQDGDVDRAMAVYVKALEKGLKPSIVLYNTLIK 399 (759)
Q Consensus 320 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 399 (759)
+...+..++..+...+++++|.++.+...... +.....|..+...+.+.++.+.+..+ .++.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l~ 91 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL-----------------NLID 91 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh-----------------hhhh
Confidence 44567788888888899999999988777653 22344444555566667765555444 2223
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHH
Q 004362 400 GLSQQGLILQALQLMNEMSESGCCPDMWTYNIVINGLCKMGCVSDANNLVNDAISKGYIPDIFTFNTLIDGYCKQLKMEI 479 (759)
Q Consensus 400 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 479 (759)
......++.....+...+... .-+...+..+..+|-+.|+.+++..+++++++.. +.++.+.|.+...|+.. +.++
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHH
Confidence 333334443333333444443 2345577788888888999999999999988876 55788888888888888 8899
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004362 480 AIEILNTMWSHGVTPDVITYNSLLNGLCKAAKSEDVMETFKTMIEKRCVPNIITYSILGESLCKAHKITEAFNLLEEMEN 559 (759)
Q Consensus 480 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 559 (759)
|.+++.+.... +...+++..+.++|.++.... +.+... -..+.+.+..
T Consensus 168 A~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~-~~d~d~----------------f~~i~~ki~~ 215 (906)
T PRK14720 168 AITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN-SDDFDF----------------FLRIERKVLG 215 (906)
T ss_pred HHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC-cccchH----------------HHHHHHHHHh
Confidence 98888887763 444556777777777776652 111111 1222222222
Q ss_pred C-CCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHH
Q 004362 560 K-GLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFS 613 (759)
Q Consensus 560 ~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 613 (759)
. +..--..++..+...|...+++++++.+++.+.+. .|.+..+...++.+|.
T Consensus 216 ~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~--~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 216 HREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEH--DNKNNKAREELIRFYK 268 (906)
T ss_pred hhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhc--CCcchhhHHHHHHHHH
Confidence 1 22223334445555566666666666666666666 5555555666665554
No 135
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.54 E-value=3.9e-05 Score=68.12 Aligned_cols=46 Identities=17% Similarity=0.190 Sum_probs=18.0
Q ss_pred hhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004362 582 LDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMS 629 (759)
Q Consensus 582 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 629 (759)
+.+|.-+|+++.++ .||++.+.+..+.+....|++++|..++++++
T Consensus 189 ~qdAfyifeE~s~k--~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL 234 (299)
T KOG3081|consen 189 IQDAFYIFEELSEK--TPPTPLLLNGQAVCHLQLGRYEEAESLLEEAL 234 (299)
T ss_pred hhhHHHHHHHHhcc--cCCChHHHccHHHHHHHhcCHHHHHHHHHHHH
Confidence 33333333333333 33333333333333333444444444444333
No 136
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.53 E-value=8.9e-07 Score=80.00 Aligned_cols=102 Identities=11% Similarity=0.062 Sum_probs=80.5
Q ss_pred HHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCCh
Q 004362 575 GFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPD-NYTYRIMIDSFCKTGGI 653 (759)
Q Consensus 575 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 653 (759)
-..+.+++.+|+..|..+++. .|.++..|...+.+|.+.|.++.|++-.+.++. +.|. ..+|..|+.+|...|++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcH
Confidence 345667888888888888888 788888888888888888888888888888874 4566 67888888888888888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004362 654 NSGYCLLLENIDKGFIPSLSTIGRVINCL 682 (759)
Q Consensus 654 ~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 682 (759)
++|+..|+++++ ++|++++|-.-+...
T Consensus 166 ~~A~~aykKaLe--ldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 166 EEAIEAYKKALE--LDPDNESYKSNLKIA 192 (304)
T ss_pred HHHHHHHHhhhc--cCCCcHHHHHHHHHH
Confidence 888888888888 888888775544444
No 137
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.46 E-value=9.4e-06 Score=67.03 Aligned_cols=109 Identities=6% Similarity=-0.025 Sum_probs=86.5
Q ss_pred ccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHH
Q 004362 564 LDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIM 643 (759)
Q Consensus 564 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 643 (759)
.+......+...+...|++++|.++|+.+... .|.+...|..++-++...|++++|+..|.++.... +.|+..+-.+
T Consensus 33 ~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~a 109 (157)
T PRK15363 33 QPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAA 109 (157)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHH
Confidence 34555667777788889999999999988887 88888889999999999999999999999988653 3348888888
Q ss_pred HHHHHhcCChHHHHHHHHHHHhC-CCCCCHHHH
Q 004362 644 IDSFCKTGGINSGYCLLLENIDK-GFIPSLSTI 675 (759)
Q Consensus 644 ~~~~~~~g~~~~A~~~~~~~~~~-g~~p~~~~~ 675 (759)
+.++...|+.+.|++.|+.++.. +-.|.....
T Consensus 110 g~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l 142 (157)
T PRK15363 110 AECYLACDNVCYAIKALKAVVRICGEVSEHQIL 142 (157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHhccChhHHHH
Confidence 88999999999999999988863 334544433
No 138
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.46 E-value=8.6e-06 Score=69.39 Aligned_cols=125 Identities=10% Similarity=0.034 Sum_probs=67.3
Q ss_pred HHHHHHHHHccCChhhHHHHHHHHHHccCCCCc---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HhhHHHH
Q 004362 569 FGTLINGFCNSGDLDGAYQLFRRMEDQYKISHT---TATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPD--NYTYRIM 643 (759)
Q Consensus 569 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l 643 (759)
|..++..+ ..++...+...++.+... .|.+ ......++..+...|++++|...|+.+.+....|+ ......|
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 33333333 256666666666666665 3443 33334455666666666666666666665431111 2234445
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 004362 644 IDSFCKTGGINSGYCLLLENIDKGFIPSLSTIGRVINCLCVDHRVHEAVGFVHLM 698 (759)
Q Consensus 644 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 698 (759)
..++...|++++|+..++.... -.............+.+.|++++|...|+++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~--~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPD--EAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccC--cchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 5666666777777766655322 1112233334455556667777777666654
No 139
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.40 E-value=0.00032 Score=62.56 Aligned_cols=138 Identities=17% Similarity=0.099 Sum_probs=76.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHh----c
Q 004362 469 DGYCKQLKMEIAIEILNTMWSHGVTPDVITYNSLLNGLCKAAKSEDVMETFKTMIEKRCVPNIITYSILGESLCK----A 544 (759)
Q Consensus 469 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 544 (759)
..|...+++++|++..+... +......-...+.+..+.+-|.+.++.|.+-. +..|.+.|.+++.+ .
T Consensus 116 ~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGG 186 (299)
T ss_pred HHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccc
Confidence 34556666666666655521 22223233334455556666666666665532 44455555555532 2
Q ss_pred CCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCH
Q 004362 545 HKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNF 618 (759)
Q Consensus 545 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 618 (759)
+.+.+|.-+|+++-++ .+|++.+.+..+.++...|++++|..+++.+..+ .+.++.+..+++.+-...|..
T Consensus 187 ek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k--d~~dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK--DAKDPETLANLIVLALHLGKD 257 (299)
T ss_pred hhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCC
Confidence 3466666666666654 4566666666666666666666666666666665 555555555555554444443
No 140
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=3.2e-05 Score=72.97 Aligned_cols=153 Identities=13% Similarity=0.026 Sum_probs=72.7
Q ss_pred HHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhh-------------HH
Q 004362 575 GFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYT-------------YR 641 (759)
Q Consensus 575 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-------------~~ 641 (759)
++.-.|++++|...--.+.+. .+.+......-+.++.-.++.+.|+..|++.+.. .|+... |.
T Consensus 178 cl~~~~~~~~a~~ea~~ilkl--d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k 253 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKL--DATNAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKK 253 (486)
T ss_pred hhhhcccchhHHHHHHHHHhc--ccchhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHH
Confidence 344455555555555555554 4444444444445555555555555555555532 343221 12
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH-----HHHHHHHhcCcHHHHHHHHHHHHHCCCCCchHHHHHhc--
Q 004362 642 IMIDSFCKTGGINSGYCLLLENIDKGFIPSLSTIG-----RVINCLCVDHRVHEAVGFVHLMVQKGIVPEVVNTIFEA-- 714 (759)
Q Consensus 642 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~-- 714 (759)
.-+.-.++.|++.+|...|.+++. ++|++...+ .......+.|+..+|+.-.+++.. ++|.....++..
T Consensus 254 ~~gN~~fk~G~y~~A~E~Yteal~--idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~ 329 (486)
T KOG0550|consen 254 ERGNDAFKNGNYRKAYECYTEALN--IDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRAN 329 (486)
T ss_pred hhhhhHhhccchhHHHHHHHHhhc--CCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHH
Confidence 222233445555555555555555 445432221 112222355556666555555554 555533332222
Q ss_pred ---cccccccchHHHHHHHhcCCC
Q 004362 715 ---DKREVASPKIVVEDLLKKSHI 735 (759)
Q Consensus 715 ---~~~~~~~a~~~~~~~~~~~~~ 735 (759)
..+.|++|.+-++++.+..-.
T Consensus 330 c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 330 CHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccc
Confidence 345555555555555554444
No 141
>PF12854 PPR_1: PPR repeat
Probab=98.35 E-value=8.2e-07 Score=52.61 Aligned_cols=32 Identities=38% Similarity=0.907 Sum_probs=16.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004362 246 GVSPNLFTFNMFIQGLCRKGAISEAISLLDSL 277 (759)
Q Consensus 246 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 277 (759)
|+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34455555555555555555555555555444
No 142
>PF12854 PPR_1: PPR repeat
Probab=98.35 E-value=7.2e-07 Score=52.83 Aligned_cols=31 Identities=32% Similarity=0.602 Sum_probs=13.4
Q ss_pred CCCCHHHHHHHHHHHHccCChhhHHHHHhhc
Q 004362 142 IVPDVYTFVIRIKSFCRTRRPHVALRLLKNM 172 (759)
Q Consensus 142 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 172 (759)
+.||..+|+++|.+|++.|+.++|.++|++|
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 3344444444444444444444444444433
No 143
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.33 E-value=2.7e-05 Score=66.37 Aligned_cols=116 Identities=10% Similarity=0.089 Sum_probs=77.0
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcc---HHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCc---hhhHHHHHHHHHhcC
Q 004362 543 KAHKITEAFNLLEEMENKGLTLD---TVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHT---TATYNIMINAFSEKL 616 (759)
Q Consensus 543 ~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g 616 (759)
..++...+...++.+.+. .+.+ ......+...+...|++++|...|+.+.... |++ ......++.++...|
T Consensus 23 ~~~~~~~~~~~~~~l~~~-~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~--~d~~l~~~a~l~LA~~~~~~~ 99 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKD-YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA--PDPELKPLARLRLARILLQQG 99 (145)
T ss_pred HCCCHHHHHHHHHHHHHH-CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHHHHHcC
Confidence 366777777777777765 2223 2334445667777788888888888877762 222 234555677788888
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHH
Q 004362 617 NFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCLLLEN 663 (759)
Q Consensus 617 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 663 (759)
++++|+..++..... ...+..+...+.++...|++++|+..|+++
T Consensus 100 ~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 100 QYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred CHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 888888888664322 233556667777888888888888888765
No 144
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.32 E-value=1.1e-05 Score=80.03 Aligned_cols=104 Identities=16% Similarity=0.040 Sum_probs=83.6
Q ss_pred HHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHhhHHHHHHHHHhcC
Q 004362 573 INGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPP-DNYTYRIMIDSFCKTG 651 (759)
Q Consensus 573 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 651 (759)
+..+...|++++|+..|++++.. .|.+...|..++.+|...|++++|+..++++++. .| +...|..++.+|...|
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhC
Confidence 45566778888888888888887 7888888888888888888888888888888865 45 4778888888888889
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004362 652 GINSGYCLLLENIDKGFIPSLSTIGRVINCL 682 (759)
Q Consensus 652 ~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 682 (759)
++++|+..|+++++ +.|++.....++..+
T Consensus 85 ~~~eA~~~~~~al~--l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 85 EYQTAKAALEKGAS--LAPGDSRFTKLIKEC 113 (356)
T ss_pred CHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 99999998888888 778777666555444
No 145
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.27 E-value=2.2e-05 Score=77.31 Aligned_cols=121 Identities=15% Similarity=0.163 Sum_probs=80.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhc
Q 004362 536 ILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEK 615 (759)
Q Consensus 536 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 615 (759)
.++..+...++++.|+.+++++.+.. |+ ....++..+...++-.+|++++.+.... .|.+...+..-+..+...
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhc
Confidence 34445555667777777777776542 33 3344566666666777777777777766 666666666667777777
Q ss_pred CCHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 004362 616 LNFYMAEKLFYEMSEKGCPPD-NYTYRIMIDSFCKTGGINSGYCLLLENI 664 (759)
Q Consensus 616 g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 664 (759)
++++.|+.+.+++.+. .|+ ..+|..|+.+|...|+++.|+..++.+.
T Consensus 248 ~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 7777777777777754 454 5677777777777777777777666543
No 146
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=0.00011 Score=69.64 Aligned_cols=154 Identities=9% Similarity=-0.036 Sum_probs=69.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHH-------------H
Q 004362 505 GLCKAAKSEDVMETFKTMIEKRCVPNIITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFG-------------T 571 (759)
Q Consensus 505 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------------~ 571 (759)
++.-.|+.++|...--...+.+ ..+......-..++-..++.+.+...|++.++. .|+..... .
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~ 254 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKE 254 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHh
Confidence 4445566666666555555442 123333333333344455666666666666653 23322111 1
Q ss_pred HHHHHHccCChhhHHHHHHHHHHccCCCCc----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HhhHHHHHHH
Q 004362 572 LINGFCNSGDLDGAYQLFRRMEDQYKISHT----TATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPD-NYTYRIMIDS 646 (759)
Q Consensus 572 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~ 646 (759)
=..-..+.|++.+|.+.|...+.. .|.+ ...|...+-+..+.|+..+|+.--+.+.+ +.|. ...+..-+.+
T Consensus 255 ~gN~~fk~G~y~~A~E~Yteal~i--dP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c 330 (486)
T KOG0550|consen 255 RGNDAFKNGNYRKAYECYTEALNI--DPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANC 330 (486)
T ss_pred hhhhHhhccchhHHHHHHHHhhcC--CccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHH
Confidence 111223445555555555555544 2322 23334444444455555555555554442 1222 2222223334
Q ss_pred HHhcCChHHHHHHHHHHHh
Q 004362 647 FCKTGGINSGYCLLLENID 665 (759)
Q Consensus 647 ~~~~g~~~~A~~~~~~~~~ 665 (759)
+...++|++|++.++++.+
T Consensus 331 ~l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 331 HLALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4444555555555555544
No 147
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.27 E-value=2e-05 Score=64.93 Aligned_cols=99 Identities=17% Similarity=0.135 Sum_probs=54.8
Q ss_pred HHHHHHHHHHccCChhhHHHHHHHHHHccCCCCc---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HhhH
Q 004362 568 AFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHT---TATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPD----NYTY 640 (759)
Q Consensus 568 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~ 640 (759)
++...+..+.+.|++++|...|+.+... .|++ ...+..++.++...|++++|+..++++... .|+ ..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~ 79 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKK--YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK--YPKSPKAPDAL 79 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH--CCCCCcccHHH
Confidence 3444555555666666666666666554 2222 344555666666666666666666665543 122 3345
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 004362 641 RIMIDSFCKTGGINSGYCLLLENIDKGFIPSL 672 (759)
Q Consensus 641 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 672 (759)
..++.++...|++++|...++++++ ..|++
T Consensus 80 ~~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~ 109 (119)
T TIGR02795 80 LKLGMSLQELGDKEKAKATLQQVIK--RYPGS 109 (119)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHH--HCcCC
Confidence 5555566666666666666666665 34543
No 148
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.25 E-value=2e-05 Score=65.19 Aligned_cols=98 Identities=10% Similarity=-0.033 Sum_probs=85.0
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-HHH
Q 004362 599 SHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPD-NYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSLS-TIG 676 (759)
Q Consensus 599 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~ 676 (759)
+.+......++..+...|++++|.++|+-+... .|. ...|..|+.+|...|++++|+..|.++.. +.|+++ .+.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~--L~~ddp~~~~ 107 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ--IKIDAPQAPW 107 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCchHHH
Confidence 456677788888999999999999999999855 554 78899999999999999999999999999 888754 456
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHH
Q 004362 677 RVINCLCVDHRVHEAVGFVHLMVQ 700 (759)
Q Consensus 677 ~l~~~~~~~g~~~~A~~~~~~~~~ 700 (759)
.+..++...|+.+.|.+.|+....
T Consensus 108 ~ag~c~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 108 AAAECYLACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777777999999999999999876
No 149
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.23 E-value=1.7e-05 Score=62.36 Aligned_cols=92 Identities=15% Similarity=0.185 Sum_probs=47.0
Q ss_pred HHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc
Q 004362 571 TLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKT 650 (759)
Q Consensus 571 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 650 (759)
.++..+...|++++|...++.+.+. .|++...+..++.++...|++++|.+.+++..+.. +.+..++..++..+...
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHH
Confidence 3444445555555555555555544 34444445555555555555555555555554432 22234455555555555
Q ss_pred CChHHHHHHHHHHHh
Q 004362 651 GGINSGYCLLLENID 665 (759)
Q Consensus 651 g~~~~A~~~~~~~~~ 665 (759)
|++++|...+.++++
T Consensus 82 ~~~~~a~~~~~~~~~ 96 (100)
T cd00189 82 GKYEEALEAYEKALE 96 (100)
T ss_pred HhHHHHHHHHHHHHc
Confidence 555555555555544
No 150
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.23 E-value=4.3e-05 Score=75.24 Aligned_cols=125 Identities=12% Similarity=0.129 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 004362 567 VAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDS 646 (759)
Q Consensus 567 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 646 (759)
.....++..+...++++.|+.+|+++.+. . +.....++.++...++-.+|++++++.++.. +-+...+..-+..
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~--~---pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~f 243 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRER--D---PEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEF 243 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhc--C---CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 34566778888889999999999999887 3 4466778999999999999999999999752 4457777777788
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 004362 647 FCKTGGINSGYCLLLENIDKGFIPS-LSTIGRVINCLCVDHRVHEAVGFVHLMV 699 (759)
Q Consensus 647 ~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 699 (759)
|...++++.|+.+.+++++ +.|+ ..+|..+..+|...|++++|+..++.+.
T Consensus 244 Ll~k~~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 244 LLSKKKYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHhcCCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999 8886 5688999999999999999999998876
No 151
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.17 E-value=3.6e-06 Score=63.71 Aligned_cols=82 Identities=20% Similarity=0.159 Sum_probs=38.5
Q ss_pred CCChHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHH
Q 004362 17 QKNPLTALEMFNSVKREDGFKHTLLTYKYMIDKLGFHGNFEEMENLLLEMRMDVDDSLLEGVHIGVMRNYGRRGKVQEAV 96 (759)
Q Consensus 17 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 96 (759)
+|+++.|+.+|+.+....+..++...+..++.++.+.|++++|..+++. .+.++. +......+++++.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~--~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS--NPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC--HHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC--CHHHHHHHHHHHHHhCCHHHHH
Confidence 3455555555555544432222333344455555555555555555554 333333 3344444455555555555555
Q ss_pred HHHHH
Q 004362 97 DVFER 101 (759)
Q Consensus 97 ~~~~~ 101 (759)
+.|++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 55543
No 152
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=98.17 E-value=0.0082 Score=57.97 Aligned_cols=463 Identities=11% Similarity=0.073 Sum_probs=244.2
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCC
Q 004362 237 KLFNKVLKRGVSPNLFTFNMFIQGLCRKGAISEAISLLDSLGREDLTPDVVTYNTLMCGLCKNSKVVEAEYYLHKMVNEG 316 (759)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 316 (759)
++-+++.+. +.|..+|-.|++.+...|.+++..++++++..-- +--...|..-+.+-....++.....+|.+-+...
T Consensus 30 rLRerIkdN--PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pf-p~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~ 106 (660)
T COG5107 30 RLRERIKDN--PTNILSYFQLIQYLETQESMDAEREMYEQLSSPF-PIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS 106 (660)
T ss_pred HHHHHhhcC--chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCC-ccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh
Confidence 555555443 5588899999999999999999999999987431 3345677777777777888888888888777663
Q ss_pred CCCChhcHHHHHHHHHHcCCh------hHHHHHHHHHHh-CCCCCC-cccHHHHHHHH---HhcCC------HHHHHHHH
Q 004362 317 LEPDGFSYNAVIDGYCKAGMI------SSADKILNDAIF-KGFVPD-EFTYCSLINGL---CQDGD------VDRAMAVY 379 (759)
Q Consensus 317 ~~~~~~~~~~ll~~~~~~~~~------~~a~~~~~~~~~-~~~~~~-~~~~~~l~~~~---~~~~~------~~~A~~~~ 379 (759)
.. ...|...+.-..+.... ....+.|+-.+. .++.|- ...|+..+..+ -..|. +|..+..|
T Consensus 107 l~--ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y 184 (660)
T COG5107 107 LN--LDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGY 184 (660)
T ss_pred cc--HhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHH
Confidence 33 44555555543333211 112233333332 233332 23344333322 11222 33333444
Q ss_pred HHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CC
Q 004362 380 VKALEKGLKPSIVLYNTLIKGLSQQGLILQALQLMNEMSESGCCPDMWTYNIVINGLCKMGCVSDANNLVNDAISK--GY 457 (759)
Q Consensus 380 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~ 457 (759)
.+++... .|+.++.++-|+..... .|..|-.-.+. ....-+..|...++++... |.
T Consensus 185 ~ral~tP-----------------~~nleklW~dy~~fE~e---~N~~TarKfvg--e~sp~ym~ar~~yqe~~nlt~Gl 242 (660)
T COG5107 185 MRALQTP-----------------MGNLEKLWKDYENFELE---LNKITARKFVG--ETSPIYMSARQRYQEIQNLTRGL 242 (660)
T ss_pred HHHHcCc-----------------cccHHHHHHHHHHHHHH---HHHHHHHHHhc--ccCHHHHHHHHHHHHHHHHhccc
Confidence 4443321 13333333333322211 11111111110 0011122333333332211 11
Q ss_pred ----CCCHhh-----------HHHHHHHHHhc-----CC-H-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004362 458 ----IPDIFT-----------FNTLIDGYCKQ-----LK-M-EIAIEILNTMWSHGVTPDVITYNSLLNGLCKAAKSEDV 515 (759)
Q Consensus 458 ----~~~~~~-----------~~~l~~~~~~~-----~~-~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 515 (759)
+.+..+ |..+|..-... |+ . ....-++++.... +.-....|--.-..+...++-+.|
T Consensus 243 ~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~a 321 (660)
T COG5107 243 SVKNPINLRTANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKA 321 (660)
T ss_pred cccCchhhhhhccccccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHH
Confidence 011111 22222211111 11 1 1222233333332 122333444444444556677777
Q ss_pred HHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHc---cCChhhHHHHHHHH
Q 004362 516 METFKTMIEKRCVPNIITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCN---SGDLDGAYQLFRRM 592 (759)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~ 592 (759)
+....... +..+.....+...|....+.+.....|+...+. ...-...+..-.. -|+++.-.+++-.-
T Consensus 322 l~tv~rg~----~~spsL~~~lse~yel~nd~e~v~~~fdk~~q~-----L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr 392 (660)
T COG5107 322 LKTVERGI----EMSPSLTMFLSEYYELVNDEEAVYGCFDKCTQD-----LKRKYSMGESESASKVDNNFEYSKELLLKR 392 (660)
T ss_pred HHHHHhcc----cCCCchheeHHHHHhhcccHHHHhhhHHHHHHH-----HHHHHhhhhhhhhccccCCccccHHHHHHH
Confidence 76655433 222223333445555566666666666665531 0000111111111 23343333322221
Q ss_pred HHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 004362 593 EDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKG-CPPDNYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPS 671 (759)
Q Consensus 593 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 671 (759)
..+ -..+|...++.-.+..-++.|..+|-++.+.+ +.++..++.+++. +..+|+..-|..+|+-.+. ..||
T Consensus 393 ~~k-----~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E-~~~~~d~~ta~~ifelGl~--~f~d 464 (660)
T COG5107 393 INK-----LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIE-YYATGDRATAYNIFELGLL--KFPD 464 (660)
T ss_pred Hhh-----hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHH-HHhcCCcchHHHHHHHHHH--hCCC
Confidence 211 23456666777777777899999999998887 4566777777776 5568999999999999887 5677
Q ss_pred HHHH-HHHHHHHHhcCcHHHHHHHHHHHHHCCC---CCchHHHHHhc--cccccccchHHHHHHHhcCCCchHHHHHHH
Q 004362 672 LSTI-GRVINCLCVDHRVHEAVGFVHLMVQKGI---VPEVVNTIFEA--DKREVASPKIVVEDLLKKSHITYYAYELLF 744 (759)
Q Consensus 672 ~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~p~~~~~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 744 (759)
...+ +..+..+.+.|+-..|..+|++.+.+=- -..+|..|+.. .-|+...+..+-+++.+.=|.-..+-..++
T Consensus 465 ~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~S 543 (660)
T COG5107 465 STLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTS 543 (660)
T ss_pred chHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHH
Confidence 6655 5677777899999999999996654211 12288889888 778888899988999885555433333333
No 153
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.14 E-value=0.00011 Score=76.10 Aligned_cols=90 Identities=9% Similarity=-0.017 Sum_probs=63.0
Q ss_pred hhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHH
Q 004362 583 DGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCLLLE 662 (759)
Q Consensus 583 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 662 (759)
..+.+..++.......+.++.+|..++-.....|++++|...++++++. .|+...|..++.++...|+.++|...+++
T Consensus 401 ~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~ 478 (517)
T PRK10153 401 AALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYST 478 (517)
T ss_pred HHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3444444444443335555667777776767778888888888888854 46777788888888888888888888888
Q ss_pred HHhCCCCCCHHHHH
Q 004362 663 NIDKGFIPSLSTIG 676 (759)
Q Consensus 663 ~~~~g~~p~~~~~~ 676 (759)
++. +.|..++++
T Consensus 479 A~~--L~P~~pt~~ 490 (517)
T PRK10153 479 AFN--LRPGENTLY 490 (517)
T ss_pred HHh--cCCCCchHH
Confidence 887 777777643
No 154
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.10 E-value=8.2e-06 Score=61.72 Aligned_cols=79 Identities=18% Similarity=0.176 Sum_probs=36.6
Q ss_pred CCHHHHHHHHHHHHHcCC-CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCcHHHHHH
Q 004362 616 LNFYMAEKLFYEMSEKGC-PPDNYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSL-STIGRVINCLCVDHRVHEAVG 693 (759)
Q Consensus 616 g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~ 693 (759)
|++++|+.+++++.+..- .|+...+..++.+|.+.|++++|+.++++ .+ ..|++ .....+..++...|++++|++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 455555555555554321 01233444455555555555555555555 32 23332 222333444455556666555
Q ss_pred HHHH
Q 004362 694 FVHL 697 (759)
Q Consensus 694 ~~~~ 697 (759)
.+++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5544
No 155
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.09 E-value=0.0011 Score=55.68 Aligned_cols=131 Identities=14% Similarity=0.092 Sum_probs=83.0
Q ss_pred CCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---Hh
Q 004362 562 LTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPD---NY 638 (759)
Q Consensus 562 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~ 638 (759)
..|+...-..+..+..+.|++.+|...|++...- ....|+.....++++....+++.+|...++++.+. +|+ +.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~--~pa~r~pd 161 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEY--NPAFRSPD 161 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhc--CCccCCCC
Confidence 3455555566666777777777777777766543 34456666666677777777777777777776654 232 34
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 004362 639 TYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSLSTIGRVINCLCVDHRVHEAVGFVHL 697 (759)
Q Consensus 639 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 697 (759)
+...++..+...|.+.+|...|+.++. .-|+....-.....+.++|+.++|..-+..
T Consensus 162 ~~Ll~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 162 GHLLFARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred chHHHHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 455566777777777777777777777 556555444444555667766665544433
No 156
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=0.00023 Score=65.33 Aligned_cols=118 Identities=7% Similarity=-0.037 Sum_probs=69.2
Q ss_pred HHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC---ChHHHHHHHHHHHhC
Q 004362 590 RRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTG---GINSGYCLLLENIDK 666 (759)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~ 666 (759)
+.-... .|.|...|..|+.+|...|+.+.|..-|.++.+.. ++++..+..++.++..+. ...++..+|+++++
T Consensus 146 e~~L~~--nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~- 221 (287)
T COG4235 146 ETHLQQ--NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALA- 221 (287)
T ss_pred HHHHHh--CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh-
Confidence 334444 66677777777777777777777777777766442 334666666665554432 34566677777776
Q ss_pred CCCCCHHHHHHH-HHHHHhcCcHHHHHHHHHHHHHCCCCCchHHHHH
Q 004362 667 GFIPSLSTIGRV-INCLCVDHRVHEAVGFVHLMVQKGIVPEVVNTIF 712 (759)
Q Consensus 667 g~~p~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 712 (759)
++|++.....+ ...+...|++.+|...++.|.+....-+.+..++
T Consensus 222 -~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~i 267 (287)
T COG4235 222 -LDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLI 267 (287)
T ss_pred -cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 66655544433 3344667777777777777766332222454444
No 157
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.06 E-value=0.00021 Score=68.71 Aligned_cols=120 Identities=13% Similarity=0.120 Sum_probs=55.6
Q ss_pred CHHHHHHHHHHHHHC----CCC-ccHHHHHHHHHHHHcc-CChhhHHHHHHHHHHccCCCCc----hhhHHHHHHHHHhc
Q 004362 546 KITEAFNLLEEMENK----GLT-LDTVAFGTLINGFCNS-GDLDGAYQLFRRMEDQYKISHT----TATYNIMINAFSEK 615 (759)
Q Consensus 546 ~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~ 615 (759)
++++|...+++..+. |-+ .-...+..+...|... |++++|++.|+++.+.+..... ...+..++..+...
T Consensus 89 ~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l 168 (282)
T PF14938_consen 89 DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARL 168 (282)
T ss_dssp THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHh
Confidence 555555555555431 111 1122344555556555 6666666666666554322221 23334455556666
Q ss_pred CCHHHHHHHHHHHHHcCCCCC-----H-hhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004362 616 LNFYMAEKLFYEMSEKGCPPD-----N-YTYRIMIDSFCKTGGINSGYCLLLENID 665 (759)
Q Consensus 616 g~~~~A~~~~~~~~~~~~~p~-----~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 665 (759)
|++++|+++|+++.......+ . ..+...+-++...||...|...+++...
T Consensus 169 ~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 169 GRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp T-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred CCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 666666666666554322111 0 1122233344555666666666666554
No 158
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.05 E-value=5.8e-05 Score=68.60 Aligned_cols=109 Identities=16% Similarity=0.124 Sum_probs=85.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCH
Q 004362 539 ESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNF 618 (759)
Q Consensus 539 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 618 (759)
.-+.+.+++++|...|.+++.. .|-+...|..-..+|.+.|.++.|++-.+..+.. .|....+|..|+.+|...|++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l-~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIEL-DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcH
Confidence 4456778899999999999886 4556777777788899999999999999998888 788888899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHH-HHHHhcCC
Q 004362 619 YMAEKLFYEMSEKGCPPDNYTYRIMI-DSFCKTGG 652 (759)
Q Consensus 619 ~~A~~~~~~~~~~~~~p~~~~~~~l~-~~~~~~g~ 652 (759)
.+|++.|++.+ .+.|+..+|..-+ .+--+.+.
T Consensus 166 ~~A~~aykKaL--eldP~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 166 EEAIEAYKKAL--ELDPDNESYKSNLKIAEQKLNE 198 (304)
T ss_pred HHHHHHHHhhh--ccCCCcHHHHHHHHHHHHHhcC
Confidence 99999999988 4578866664433 34333333
No 159
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.05 E-value=0.00021 Score=63.02 Aligned_cols=82 Identities=10% Similarity=-0.001 Sum_probs=39.6
Q ss_pred HHHHHHHHHccCChhhHHHHHHHHHHccCCCC-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HhhHHHHHHH
Q 004362 569 FGTLINGFCNSGDLDGAYQLFRRMEDQYKISH-TTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPD-NYTYRIMIDS 646 (759)
Q Consensus 569 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~ 646 (759)
+..+...+...|++++|...|+++......++ ....+..++.++...|++++|+..++++.+. .|+ ...+..++.+
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~ 115 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 44444455555555555555555544321111 1244555555555555555555555555533 232 4444444455
Q ss_pred HHhcCC
Q 004362 647 FCKTGG 652 (759)
Q Consensus 647 ~~~~g~ 652 (759)
+...|+
T Consensus 116 ~~~~g~ 121 (172)
T PRK02603 116 YHKRGE 121 (172)
T ss_pred HHHcCC
Confidence 554444
No 160
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.04 E-value=0.00016 Score=59.48 Aligned_cols=101 Identities=12% Similarity=0.021 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCC-ccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCC--CCHHHHHHH
Q 004362 41 LTYKYMIDKLGFHGNFEEMENLLLEMRMDVDDS-LLEGVHIGVMRNYGRRGKVQEAVDVFERMDFYNCE--PTVLSYNTI 117 (759)
Q Consensus 41 ~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l 117 (759)
.++..++..+.+.|++++|.+.|..+....|.. ....++..++.++.+.|+++.|...|+.+....+. ....++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 345566666777777777777777777666541 12456666777777777777777777776643211 124456666
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCC
Q 004362 118 MNILVEYGYFSQVHKVYMRMRNKG 141 (759)
Q Consensus 118 ~~~~~~~~~~~~a~~~~~~~~~~~ 141 (759)
..++.+.|++++|...++++.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 777777777777777777777653
No 161
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.03 E-value=0.0015 Score=54.87 Aligned_cols=137 Identities=12% Similarity=0.098 Sum_probs=111.4
Q ss_pred CCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHH
Q 004362 527 CVPNIITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYN 606 (759)
Q Consensus 527 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 606 (759)
..|+...-..+..++...|++.+|...|++...--+..|......+..+....+++..|...++.+.+......+++...
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 35777778889999999999999999999998765677888888999999999999999999999887743334567777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004362 607 IMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCLLLENID 665 (759)
Q Consensus 607 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 665 (759)
.+++.|...|++.+|..-|+.+... .|++..-......+.++|+.++|..-+....+
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 8899999999999999999999954 67766655566667888888887766665544
No 162
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.00 E-value=0.00034 Score=72.58 Aligned_cols=139 Identities=12% Similarity=-0.002 Sum_probs=101.8
Q ss_pred CCccHHHHHHHHHHHHc--c---CChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcC--------CHHHHHHHHHHH
Q 004362 562 LTLDTVAFGTLINGFCN--S---GDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKL--------NFYMAEKLFYEM 628 (759)
Q Consensus 562 ~~~~~~~~~~l~~~~~~--~---g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~~ 628 (759)
.+.+...|..++++... . ++.+.|+.+|+++.+. .|+....|..++.++.... ++..+.+..++.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 45666777776665432 2 2367888888888888 7888777777766554321 234555555554
Q ss_pred HHcC-CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCc
Q 004362 629 SEKG-CPPDNYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSLSTIGRVINCLCVDHRVHEAVGFVHLMVQKGIVPE 706 (759)
Q Consensus 629 ~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 706 (759)
.... .+.++.+|..++..+...|++++|...++++++ +.|+...+..+...+...|+.++|.+.++++.. ++|.
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~ 485 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPG 485 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCC
Confidence 4321 234567888888777888999999999999999 889877777778888999999999999999988 4554
No 163
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=0.00032 Score=64.46 Aligned_cols=120 Identities=13% Similarity=0.076 Sum_probs=92.8
Q ss_pred HHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcC---CHHHHHHHHHHHHH
Q 004362 554 LEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKL---NFYMAEKLFYEMSE 630 (759)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~ 630 (759)
++.-+.. -|-|.+.|..|..+|...|+++.|...|.+..+. .|+++..+..++.++.... ...++..++++++.
T Consensus 145 Le~~L~~-nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~ 221 (287)
T COG4235 145 LETHLQQ-NPGDAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALA 221 (287)
T ss_pred HHHHHHh-CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh
Confidence 3333443 4668888999999999999999999999999988 8888888888888776543 57788999999986
Q ss_pred cCCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004362 631 KGCPPD-NYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSLSTIGRVIN 680 (759)
Q Consensus 631 ~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 680 (759)
. .|+ ..+...|+..+...|++.+|...|+.|++ ..|.+..+..++.
T Consensus 222 ~--D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~--~lp~~~~rr~~ie 268 (287)
T COG4235 222 L--DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLD--LLPADDPRRSLIE 268 (287)
T ss_pred c--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHh--cCCCCCchHHHHH
Confidence 5 454 66677777889999999999999999998 5555454544443
No 164
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.98 E-value=0.00023 Score=57.01 Aligned_cols=95 Identities=14% Similarity=0.071 Sum_probs=66.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---HHHHH-H
Q 004362 604 TYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPD--NYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPS---LSTIG-R 677 (759)
Q Consensus 604 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~---~~~~~-~ 677 (759)
+...+++++-..|+.++|+.+|++..+.|+... ...+..++.++...|++++|+.++++.+. -.|+ +.... .
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~--~~p~~~~~~~l~~f 80 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE--EFPDDELNAALRVF 80 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCccccHHHHHH
Confidence 445667777888888888888888887775554 45667777788888888888888888876 3354 33332 2
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHH
Q 004362 678 VINCLCVDHRVHEAVGFVHLMVQ 700 (759)
Q Consensus 678 l~~~~~~~g~~~~A~~~~~~~~~ 700 (759)
+..++...|++++|++++-....
T Consensus 81 ~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 81 LALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 33445678888888887766543
No 165
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.98 E-value=2.9e-05 Score=55.25 Aligned_cols=61 Identities=11% Similarity=0.206 Sum_probs=36.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 004362 608 MINAFSEKLNFYMAEKLFYEMSEKGCPPD-NYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSL 672 (759)
Q Consensus 608 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 672 (759)
++..+...|++++|+..|+++++. .|+ ...+..++.++...|++++|+.+|+++++ ..|++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~--~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQ--DPDNPEAWYLLGRILYQQGRYDEALAYYERALE--LDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCC--STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCC
Confidence 445566666666666666666644 243 56666666666666666666666666666 55554
No 166
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.98 E-value=0.019 Score=55.55 Aligned_cols=145 Identities=16% Similarity=0.189 Sum_probs=115.8
Q ss_pred hcHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHH
Q 004362 532 ITYSILGESLCKAHKITEAFNLLEEMENKG-LTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMIN 610 (759)
Q Consensus 532 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 610 (759)
..|...+....+..-.+.|..+|-++.+.+ ..++..++++++..++ .|+..-|.++|+.-... .|+++..-+....
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 456666777777778899999999999887 5567777888887654 69999999999988887 6777766677778
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCC--HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004362 611 AFSEKLNFYMAEKLFYEMSEKGCPPD--NYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSLSTIGRVINCL 682 (759)
Q Consensus 611 ~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 682 (759)
.+...++-..|..+|++.+++ +..+ ..+|..++.--..-|+...+..+=+++.+ +.|.........+.+
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry 545 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRY 545 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHH
Confidence 888899999999999977765 3444 56899999888899999999999999988 788766665655555
No 167
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.96 E-value=0.00026 Score=62.49 Aligned_cols=106 Identities=10% Similarity=0.025 Sum_probs=76.7
Q ss_pred HHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HhhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 004362 590 RRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPD--NYTYRIMIDSFCKTGGINSGYCLLLENIDKG 667 (759)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 667 (759)
..+......+.....+..++..+...|++++|+..|+++++....+. ...+..++.++...|++++|+..++++++
T Consensus 23 ~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-- 100 (172)
T PRK02603 23 LKILPINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE-- 100 (172)
T ss_pred HHHcccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--
Confidence 33333333445667788899999999999999999999986532222 46788999999999999999999999999
Q ss_pred CCCCHHHH-HHHHHHHHhcCcHHHHHHHHHH
Q 004362 668 FIPSLSTI-GRVINCLCVDHRVHEAVGFVHL 697 (759)
Q Consensus 668 ~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~ 697 (759)
..|+.... ..+...+...|+...+..-++.
T Consensus 101 ~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~ 131 (172)
T PRK02603 101 LNPKQPSALNNIAVIYHKRGEKAEEAGDQDE 131 (172)
T ss_pred hCcccHHHHHHHHHHHHHcCChHhHhhCHHH
Confidence 77865444 4455555677775444444333
No 168
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.96 E-value=0.00018 Score=71.52 Aligned_cols=89 Identities=8% Similarity=-0.019 Sum_probs=53.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCH
Q 004362 539 ESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNF 618 (759)
Q Consensus 539 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 618 (759)
..+...|++++|+..|+++++. .+.+...|..+..+|...|++++|+..++++... .|.+...|..++.+|...|++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~-~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDL-DPNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCCH
Confidence 3344556666666666666554 2334555555566666666666666666666665 555666666666666666666
Q ss_pred HHHHHHHHHHHH
Q 004362 619 YMAEKLFYEMSE 630 (759)
Q Consensus 619 ~~A~~~~~~~~~ 630 (759)
++|+..|+++++
T Consensus 87 ~eA~~~~~~al~ 98 (356)
T PLN03088 87 QTAKAALEKGAS 98 (356)
T ss_pred HHHHHHHHHHHH
Confidence 666666666664
No 169
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.96 E-value=3e-05 Score=56.08 Aligned_cols=62 Identities=11% Similarity=0.126 Sum_probs=37.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcC-ChHHHHHHHHHHHh
Q 004362 602 TATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPD-NYTYRIMIDSFCKTG-GINSGYCLLLENID 665 (759)
Q Consensus 602 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 665 (759)
+..|..++..+...|++++|+..|+++++. .|+ ...|..++.+|...| ++++|+..++++++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 445556666666666666666666666654 233 556666666666666 46666666666665
No 170
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.95 E-value=0.00015 Score=56.87 Aligned_cols=94 Identities=15% Similarity=0.122 Sum_probs=67.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHH
Q 004362 534 YSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFS 613 (759)
Q Consensus 534 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 613 (759)
+..++..+...|++++|...++++.+. .+.+...+..+..++...|++++|.+.++..... .|.+...+..++.++.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL-DPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL--DPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCcchhHHHHHHHHHH
Confidence 445566666777777777777777665 2334466667777777778888888888877776 5666677777778888
Q ss_pred hcCCHHHHHHHHHHHHH
Q 004362 614 EKLNFYMAEKLFYEMSE 630 (759)
Q Consensus 614 ~~g~~~~A~~~~~~~~~ 630 (759)
..|++++|...+.++.+
T Consensus 80 ~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 80 KLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHhHHHHHHHHHHHHc
Confidence 88888888888877764
No 171
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.94 E-value=0.0001 Score=70.45 Aligned_cols=128 Identities=11% Similarity=0.066 Sum_probs=62.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHc-cCChhhHHHHHHHHHHccCCCCchhhHHHHHHHH
Q 004362 534 YSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCN-SGDLDGAYQLFRRMEDQYKISHTTATYNIMINAF 612 (759)
Q Consensus 534 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 612 (759)
|..++....+.+..+.|..+|.++.+. ...+..+|...+..-.. .++.+.|.++|+...+. .|.+...|...+..+
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~-~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKD-KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCC-CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHH
Confidence 444444444555555555555555532 12233344444444222 34444455555555555 455555555555555
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCH---hhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004362 613 SEKLNFYMAEKLFYEMSEKGCPPDN---YTYRIMIDSFCKTGGINSGYCLLLENID 665 (759)
Q Consensus 613 ~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 665 (759)
...|+.+.|..+|++.+.. ++++. ..|...+.--.+.|+++...++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555543 22222 3555555555556666666666666555
No 172
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.91 E-value=0.00047 Score=66.35 Aligned_cols=185 Identities=15% Similarity=0.180 Sum_probs=104.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHC----CCCc-cHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCC----chhhHHHHHH
Q 004362 540 SLCKAHKITEAFNLLEEMENK----GLTL-DTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISH----TTATYNIMIN 610 (759)
Q Consensus 540 ~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~~l~~ 610 (759)
.|...+++++|...|.+.... +-+. ....|...+.+|.+. ++++|++.++++.+.+.... -...+..++.
T Consensus 44 ~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~ 122 (282)
T PF14938_consen 44 CFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAE 122 (282)
T ss_dssp HHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 344455555555555554321 1111 112233334444333 66666666666654321111 1345566777
Q ss_pred HHHhc-CCHHHHHHHHHHHHHc----CCCCC--HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-C----CHHH-HHH
Q 004362 611 AFSEK-LNFYMAEKLFYEMSEK----GCPPD--NYTYRIMIDSFCKTGGINSGYCLLLENIDKGFI-P----SLST-IGR 677 (759)
Q Consensus 611 ~~~~~-g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-p----~~~~-~~~ 677 (759)
.|... |++++|+++|+++.+. + .+. ..++..++..+...|++++|+..|++....-+. | +... +..
T Consensus 123 ~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~ 201 (282)
T PF14938_consen 123 IYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLK 201 (282)
T ss_dssp HHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHH
Confidence 78888 9999999999998754 2 221 356778888999999999999999999874222 1 1111 122
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHCCCCCc--------hHHHHHhc-cccccccchHHHHH
Q 004362 678 VINCLCVDHRVHEAVGFVHLMVQKGIVPE--------VVNTIFEA-DKREVASPKIVVED 728 (759)
Q Consensus 678 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--------~~~~~~~~-~~~~~~~a~~~~~~ 728 (759)
.+-++...|+...|.+.+++... ..|. ....++.+ ..|+.+.-...+.+
T Consensus 202 a~l~~L~~~D~v~A~~~~~~~~~--~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~ 259 (282)
T PF14938_consen 202 AILCHLAMGDYVAARKALERYCS--QDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAE 259 (282)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHGT--TSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 23334678999999999999876 3442 44556666 55555444444433
No 173
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.89 E-value=0.00015 Score=68.38 Aligned_cols=133 Identities=11% Similarity=0.020 Sum_probs=95.9
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCC-ccHHHHHHHHHHHHccCChhhHHHHHHHHHH----ccCCCCchh
Q 004362 533 TYSILGESLCKAHKITEAFNLLEEMEN----KGLT-LDTVAFGTLINGFCNSGDLDGAYQLFRRMED----QYKISHTTA 603 (759)
Q Consensus 533 ~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~ 603 (759)
.|..++..|.-.|+++.|+...+.-+. .|-. .....+..+..++.-.|+++.|.+.|+.... .+.......
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 556666666677899999888766443 2221 2345677888899999999999999987643 333334456
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc----C-CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004362 604 TYNIMINAFSEKLNFYMAEKLFYEMSEK----G-CPPDNYTYRIMIDSFCKTGGINSGYCLLLENID 665 (759)
Q Consensus 604 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 665 (759)
+...+++.|.-...+++|+.++.+-+.- + .--....+.+|+.++...|..++|+.+.+..++
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 6778899999999999999988764321 1 112345778899999999999999998887664
No 174
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.87 E-value=0.0024 Score=59.42 Aligned_cols=66 Identities=12% Similarity=0.028 Sum_probs=49.4
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCccHH---HHHHHHHHHHhcCChhHHHHHHHHhhhCC
Q 004362 39 TLLTYKYMIDKLGFHGNFEEMENLLLEMRMDVDDSLLEG---VHIGVMRNYGRRGKVQEAVDVFERMDFYN 106 (759)
Q Consensus 39 ~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 106 (759)
++..+...+..+...|++++|.+.|+.+....|. +.. +...++.+|.+.++++.|+..|+++....
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~--s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPF--GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 4444445666667888999999999888888876 333 33667888888899999988888887554
No 175
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.87 E-value=0.031 Score=54.35 Aligned_cols=28 Identities=7% Similarity=-0.034 Sum_probs=16.1
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004362 358 TYCSLINGLCQDGDVDRAMAVYVKALEK 385 (759)
Q Consensus 358 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 385 (759)
++..++....+.++...|.+.+.-+...
T Consensus 300 ~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l 327 (549)
T PF07079_consen 300 RFGNLLSFKVKQVQTEEAKQYLALLKIL 327 (549)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence 3455555566666666666666555444
No 176
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.85 E-value=0.00033 Score=61.61 Aligned_cols=102 Identities=11% Similarity=-0.052 Sum_probs=57.2
Q ss_pred hHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCc-cHHHHHHHHHHHHhcCChhHHHHH
Q 004362 20 PLTALEMFNSVKREDGFKHTLLTYKYMIDKLGFHGNFEEMENLLLEMRMDVDDSL-LEGVHIGVMRNYGRRGKVQEAVDV 98 (759)
Q Consensus 20 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~ 98 (759)
+..+...+..+.+..+.......+..++..+...|++++|...|+.+....+.+. ...++..++.++...|++++|+..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3444444444433333223344556666666677777777777777765543311 223566677777777777777777
Q ss_pred HHHhhhCCCCCCHHHHHHHHHHHH
Q 004362 99 FERMDFYNCEPTVLSYNTIMNILV 122 (759)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~l~~~~~ 122 (759)
+++..... +.....+..+..++.
T Consensus 95 ~~~Al~~~-~~~~~~~~~la~i~~ 117 (168)
T CHL00033 95 YFQALERN-PFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHHhC-cCcHHHHHHHHHHHH
Confidence 77666442 333444555555555
No 177
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.84 E-value=0.00041 Score=60.96 Aligned_cols=96 Identities=8% Similarity=-0.053 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCC-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HhhHHHH
Q 004362 566 TVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISH-TTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPD-NYTYRIM 643 (759)
Q Consensus 566 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l 643 (759)
...+..++..+...|++++|+..|+++......++ ...++..++.++...|++++|+..++++.+. .|+ ..++..+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~--~~~~~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER--NPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHH
Confidence 44456666677777788888888877766532222 2346777777788888888888888777754 343 5556666
Q ss_pred HHHHH-------hcCChHHHHHHHHHH
Q 004362 644 IDSFC-------KTGGINSGYCLLLEN 663 (759)
Q Consensus 644 ~~~~~-------~~g~~~~A~~~~~~~ 663 (759)
+..+. ..|+++.|+..+.++
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 66666 666766555444443
No 178
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.84 E-value=0.0005 Score=64.35 Aligned_cols=102 Identities=11% Similarity=0.021 Sum_probs=74.1
Q ss_pred HHHHHHHHHHccCChhhHHHHHHHHHHccCCCCc---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HhhH
Q 004362 568 AFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHT---TATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPD----NYTY 640 (759)
Q Consensus 568 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~ 640 (759)
.|......+.+.|++++|+..|+.+... .|.+ +.++..++.+|...|++++|+..|+++.+. .|+ ...+
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~~~~dAl 220 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhHHH
Confidence 3444444445678888888888888887 5555 467778888888888888888888888765 233 4556
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH
Q 004362 641 RIMIDSFCKTGGINSGYCLLLENIDKGFIPSLSTI 675 (759)
Q Consensus 641 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 675 (759)
..++.++...|++++|..+|+++++ ..|+....
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~--~yP~s~~a 253 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIK--KYPGTDGA 253 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH--HCcCCHHH
Confidence 6667777788888888888888887 56765543
No 179
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.82 E-value=0.00017 Score=68.12 Aligned_cols=134 Identities=14% Similarity=0.116 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHccCChhhHHHHHHHHHH---ccCC-CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCCH
Q 004362 567 VAFGTLINGFCNSGDLDGAYQLFRRMED---QYKI-SHTTATYNIMINAFSEKLNFYMAEKLFYEMSEK----GC-PPDN 637 (759)
Q Consensus 567 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~p~~ 637 (759)
..|..+...|.-.|+++.|+..-+.-.. .++. .....++..+++++.-.|+++.|+++|+..... |- ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 3567777788888999999887664332 2221 223467888999999999999999999985432 21 1224
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHh--C---CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 004362 638 YTYRIMIDSFCKTGGINSGYCLLLENID--K---GFIPSLSTIGRVINCLCVDHRVHEAVGFVHLMVQ 700 (759)
Q Consensus 638 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~---g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 700 (759)
..-.+|+.+|.-..++++|+.++.+=+. . ...-....++.+..++...|..++|..+.+.-++
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 5567899999999999999999987443 1 1122445667888888889999999988777654
No 180
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.82 E-value=0.038 Score=53.78 Aligned_cols=89 Identities=13% Similarity=0.134 Sum_probs=50.3
Q ss_pred HHHhcCCChHHHHHHHHHhhhcCCCCCCH----HHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 004362 12 AVVKHQKNPLTALEMFNSVKREDGFKHTL----LTYKYMIDKLGFHGNFEEMENLLLEMRMDVDDSLLEGVHIGVMRNYG 87 (759)
Q Consensus 12 ~~l~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 87 (759)
.+|..|++.++|-++|.++-......|.. ..-..+++++. .++.+.....+....+..|. +..+..-.+....
T Consensus 14 f~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAff-l~nld~Me~~l~~l~~~~~~--s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 14 FILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFF-LNNLDLMEKQLMELRQQFGK--SAYLPLFKALVAY 90 (549)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHH-HhhHHHHHHHHHHHHHhcCC--chHHHHHHHHHHH
Confidence 45667788888888888775542222211 12233555554 34666666666666666554 3333333344455
Q ss_pred hcCChhHHHHHHHHhh
Q 004362 88 RRGKVQEAVDVFERMD 103 (759)
Q Consensus 88 ~~g~~~~A~~~~~~~~ 103 (759)
+.+++++|++.+....
T Consensus 91 ~~k~~~kal~~ls~w~ 106 (549)
T PF07079_consen 91 KQKEYRKALQALSVWK 106 (549)
T ss_pred HhhhHHHHHHHHHHHH
Confidence 7777777777776554
No 181
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.82 E-value=0.0011 Score=53.24 Aligned_cols=90 Identities=19% Similarity=0.092 Sum_probs=44.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCcc--HHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCC---chhhHHHHHHH
Q 004362 537 LGESLCKAHKITEAFNLLEEMENKGLTLD--TVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISH---TTATYNIMINA 611 (759)
Q Consensus 537 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~~l~~~ 611 (759)
...++-..|+.++|+.+|++....|...+ ...+..+...+...|++++|..+++..... .|+ +......++.+
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHH
Confidence 34444455555555555555555543332 233444555555555555555555555554 233 22333333444
Q ss_pred HHhcCCHHHHHHHHHHH
Q 004362 612 FSEKLNFYMAEKLFYEM 628 (759)
Q Consensus 612 ~~~~g~~~~A~~~~~~~ 628 (759)
+...|+.++|++.+-..
T Consensus 85 L~~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEA 101 (120)
T ss_pred HHHCCCHHHHHHHHHHH
Confidence 45555555555554443
No 182
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.81 E-value=8e-05 Score=53.63 Aligned_cols=62 Identities=13% Similarity=0.171 Sum_probs=32.3
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 004362 614 EKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSLSTIGRV 678 (759)
Q Consensus 614 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 678 (759)
..|++++|+++|+++.+.. |.+...+..++.+|.+.|++++|..+++++.. ..|+++.+..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~--~~~~~~~~~~l 64 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK--QDPDNPEYQQL 64 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG--GGTTHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCHHHHHHH
Confidence 3455555555555555442 22355555555555666666666666655555 44555444443
No 183
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.79 E-value=9.2e-05 Score=52.65 Aligned_cols=61 Identities=18% Similarity=0.241 Sum_probs=49.2
Q ss_pred HHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 004362 572 LINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPD 636 (759)
Q Consensus 572 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 636 (759)
++..+...|++++|+..|+++... .|.+...+..++.++...|++++|+..|+++++. .|+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~--~P~ 63 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQ--DPDNPEAWYLLGRILYQQGRYDEALAYYERALEL--DPD 63 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCC--STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--STT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcC
Confidence 456777888888888888888888 6888888888888888888888888888888765 454
No 184
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.76 E-value=0.00012 Score=52.76 Aligned_cols=62 Identities=21% Similarity=0.286 Sum_probs=48.3
Q ss_pred HhCCChHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHH
Q 004362 51 GFHGNFEEMENLLLEMRMDVDDSLLEGVHIGVMRNYGRRGKVQEAVDVFERMDFYNCEPTVLSYNT 116 (759)
Q Consensus 51 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 116 (759)
...|++++|...|+.+...+|. +.++...++.+|.+.|++++|..+++++.... |+...|..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~--~~~~~~~~ 63 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD--NPEARLLLAQCYLKQGQYDEAEELLERLLKQD--PDNPEYQQ 63 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT--SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG--TTHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCHHHHHH
Confidence 4678888999999888888888 88888888888999999999999888888653 44333433
No 185
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.76 E-value=0.00063 Score=65.13 Aligned_cols=129 Identities=15% Similarity=0.116 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 004362 567 VAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSE-KLNFYMAEKLFYEMSEKGCPPDNYTYRIMID 645 (759)
Q Consensus 567 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 645 (759)
.+|..++....+.+..+.|..+|.++.+. .+-+..+|...+..-.. .++.+.|..+|+..++. ++.+...|...+.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHH
Confidence 46788888899999999999999999855 44466778877777555 57777799999999986 5777889999999
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 004362 646 SFCKTGGINSGYCLLLENIDKGFIPSLS----TIGRVINCLCVDHRVHEAVGFVHLMVQ 700 (759)
Q Consensus 646 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~ 700 (759)
-+...|+.+.|..+|++++.. .|... .|..++..=.+.|+.+...++.+++.+
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999999983 44433 566666655789999999999999987
No 186
>PRK11906 transcriptional regulator; Provisional
Probab=97.72 E-value=0.0015 Score=64.18 Aligned_cols=146 Identities=13% Similarity=0.102 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHC-CCCcc-HHHHHHHHHHHHcc---------CChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhc
Q 004362 547 ITEAFNLLEEMENK-GLTLD-TVAFGTLINGFCNS---------GDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEK 615 (759)
Q Consensus 547 ~~~a~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 615 (759)
.+.|..+|.+.... ...|+ ...|..+..++... .+..+|.++.+++.+. .|.|+.+...++.++...
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel--d~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI--TTVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhh
Confidence 45566667776622 12232 34444444443221 2244555666666665 566666666666666666
Q ss_pred CCHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCcHHHHH
Q 004362 616 LNFYMAEKLFYEMSEKGCPPD-NYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSLSTIGRVINC--LCVDHRVHEAV 692 (759)
Q Consensus 616 g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~--~~~~g~~~~A~ 692 (759)
++++.|..+|+++.. +.|| +.+|...++.+.-.|+.++|...++++++ +.|.......+--+ .+-....++|+
T Consensus 352 ~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr--LsP~~~~~~~~~~~~~~~~~~~~~~~~ 427 (458)
T PRK11906 352 GQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ--LEPRRRKAVVIKECVDMYVPNPLKNNI 427 (458)
T ss_pred cchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cCchhhHHHHHHHHHHHHcCCchhhhH
Confidence 666666666666663 3455 55666666666666666666666666666 56643333221111 12334455566
Q ss_pred HHHHHH
Q 004362 693 GFVHLM 698 (759)
Q Consensus 693 ~~~~~~ 698 (759)
++|-+-
T Consensus 428 ~~~~~~ 433 (458)
T PRK11906 428 KLYYKE 433 (458)
T ss_pred HHHhhc
Confidence 655443
No 187
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.69 E-value=0.00019 Score=51.84 Aligned_cols=65 Identities=15% Similarity=0.152 Sum_probs=56.4
Q ss_pred cHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcC-CHHHHHHHHHHHHHc
Q 004362 565 DTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKL-NFYMAEKLFYEMSEK 631 (759)
Q Consensus 565 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~ 631 (759)
+...|..++..+...|++++|+..|+++.+. .|.+...|..++.++...| ++++|++.++++++.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 4567888888889999999999999999988 8888999999999999998 799999999988754
No 188
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.67 E-value=0.007 Score=54.91 Aligned_cols=67 Identities=16% Similarity=0.158 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCC-ccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCC
Q 004362 40 LLTYKYMIDKLGFHGNFEEMENLLLEMRMDVDDS-LLEGVHIGVMRNYGRRGKVQEAVDVFERMDFYN 106 (759)
Q Consensus 40 ~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 106 (759)
+..+-..+..+...|++.+|...|+.+....|.+ ....+...++.++.+.|+++.|+..++++....
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY 72 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3344556666778899999999999988887652 235577788888899999999999998887554
No 189
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.64 E-value=9.1e-05 Score=44.73 Aligned_cols=33 Identities=52% Similarity=0.774 Sum_probs=20.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 004362 183 AYCTLIAGFYEENHNVEAYELFDEMLGMGISPD 215 (759)
Q Consensus 183 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 215 (759)
+||+++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 456666666666666666666666666665554
No 190
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.63 E-value=0.064 Score=51.13 Aligned_cols=196 Identities=15% Similarity=0.178 Sum_probs=100.0
Q ss_pred cHHHHHHHHHh--cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH--HhcCCHHHHHHHHHHHHhCCCCCCHH--HHHH
Q 004362 358 TYCSLINGLCQ--DGDVDRAMAVYVKALEKGLKPSIVLYNTLIKGL--SQQGLILQALQLMNEMSESGCCPDMW--TYNI 431 (759)
Q Consensus 358 ~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ 431 (759)
.|..|-.+++. .|+-..|.+.-.+..+. +..|....-.++.+. .-.|+++.|.+-|+.|... |... .+..
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRg 159 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRG 159 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHH
Confidence 35555555443 56677777666554432 122444444454443 3358888888888888762 2211 1222
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHH--HHHHHHHHHh
Q 004362 432 VINGLCKMGCVSDANNLVNDAISKGYIPDIFTFNTLIDGYCKQLKMEIAIEILNTMWSHG-VTPDVIT--YNSLLNGLCK 508 (759)
Q Consensus 432 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~--~~~l~~~~~~ 508 (759)
+.-.--+.|..+.|.++-+..-..- +.-...+...+...+..|+|+.|+++++.-.... +.++..- -..|+.+-..
T Consensus 160 LyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~ 238 (531)
T COG3898 160 LYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAM 238 (531)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Confidence 2222345777777777777665542 2244566777777788888888888877655432 2333221 1222222111
Q ss_pred ---cCCHHHHHHHHHHHHHcCCCCChh-cHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004362 509 ---AAKSEDVMETFKTMIEKRCVPNII-TYSILGESLCKAHKITEAFNLLEEMENK 560 (759)
Q Consensus 509 ---~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 560 (759)
..+...|...-.+..+. .|+.. .-..-..++.+.|+..++-.+++.+-+.
T Consensus 239 s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ 292 (531)
T COG3898 239 SLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKA 292 (531)
T ss_pred HHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhc
Confidence 12333444433333332 33322 2222344455555555555555555553
No 191
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.61 E-value=0.00013 Score=44.01 Aligned_cols=33 Identities=52% Similarity=0.873 Sum_probs=16.1
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC
Q 004362 288 TYNTLMCGLCKNSKVVEAEYYLHKMVNEGLEPD 320 (759)
Q Consensus 288 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 320 (759)
+|++++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 344444555555555555555555544444443
No 192
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.58 E-value=0.0015 Score=64.98 Aligned_cols=117 Identities=14% Similarity=0.121 Sum_probs=52.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004362 425 DMWTYNIVINGLCKMGCVSDANNLVNDAISK--GYIPDIFTFNTLIDGYCKQLKMEIAIEILNTMWSHGVTPDVITYNSL 502 (759)
Q Consensus 425 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 502 (759)
+......++..+....+++.+..++-+.... ....-+.+..++++.|...|..+.++++++.=...|+-||..+++.+
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 3444444444444444444444444443332 11111223334555555555555555555554455555555555555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHH
Q 004362 503 LNGLCKAAKSEDVMETFKTMIEKRCVPNIITYSILGESL 541 (759)
Q Consensus 503 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 541 (759)
+..+.+.|++..|.++...|...+...+..|+...+.+|
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~ 183 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSC 183 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHH
Confidence 555555555555555544444443333334433333333
No 193
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.58 E-value=0.078 Score=50.61 Aligned_cols=298 Identities=11% Similarity=0.026 Sum_probs=186.4
Q ss_pred hHHHHHHHHHh--cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCChHHHHHHHHHHHHCCCCCCHhh--HHH
Q 004362 393 LYNTLIKGLSQ--QGLILQALQLMNEMSESGCCPDMWTYNIVING--LCKMGCVSDANNLVNDAISKGYIPDIFT--FNT 466 (759)
Q Consensus 393 ~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ 466 (759)
.|..|-.++.. .|+-..|.++-.+..+. +..|...+..++.+ -.-.|+++.|.+-|+.|... |.... ...
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRg 159 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRG 159 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHH
Confidence 34455455443 46777777766554432 23355545555544 34579999999999998852 22221 222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCChhc--HHHHHHHH--
Q 004362 467 LIDGYCKQLKMEIAIEILNTMWSHGVTPDVITYNSLLNGLCKAAKSEDVMETFKTMIEKR-CVPNIIT--YSILGESL-- 541 (759)
Q Consensus 467 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~--~~~l~~~~-- 541 (759)
|.-.--+.|+.+.|...-+..-..- +.-.-.+...+...+..|+++.|+++.+.-.... +.++..- -..|+.+-
T Consensus 160 LyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~ 238 (531)
T COG3898 160 LYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAM 238 (531)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Confidence 2223346788888888888776652 2234567788888899999999999998766542 2333321 11122111
Q ss_pred H-hcCCHHHHHHHHHHHHHCCCCccHHH-HHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHH
Q 004362 542 C-KAHKITEAFNLLEEMENKGLTLDTVA-FGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFY 619 (759)
Q Consensus 542 ~-~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 619 (759)
. -..+...|...-.+..+. .||..- -..-..++.+.|+..++-.+++.+-+... .+.++ ....+.+.|+.
T Consensus 239 s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~eP---HP~ia--~lY~~ar~gdt- 310 (531)
T COG3898 239 SLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEP---HPDIA--LLYVRARSGDT- 310 (531)
T ss_pred HHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCC---ChHHH--HHHHHhcCCCc-
Confidence 1 123566677777666653 444332 22345778899999999999999987632 33322 22334455543
Q ss_pred HHHHHHHHHHHc-CCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCcHHHHHHHHH
Q 004362 620 MAEKLFYEMSEK-GCPPD-NYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSLSTIGRVINCL-CVDHRVHEAVGFVH 696 (759)
Q Consensus 620 ~A~~~~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~-~~~g~~~~A~~~~~ 696 (759)
++.-++++... .++|| ......+..+-...|++..|..-.+.+.. ..|....+..+...- ...|+-.++..++-
T Consensus 311 -a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlA 387 (531)
T COG3898 311 -ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLA 387 (531)
T ss_pred -HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHH
Confidence 33333332211 34666 66777777888889999999998888888 778766665555555 46699999999999
Q ss_pred HHHHCCCCCc
Q 004362 697 LMVQKGIVPE 706 (759)
Q Consensus 697 ~~~~~~~~p~ 706 (759)
+.+..+-+|.
T Consensus 388 qav~APrdPa 397 (531)
T COG3898 388 QAVKAPRDPA 397 (531)
T ss_pred HHhcCCCCCc
Confidence 9988777776
No 194
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.57 E-value=0.00012 Score=43.79 Aligned_cols=33 Identities=18% Similarity=0.443 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 004362 112 LSYNTIMNILVEYGYFSQVHKVYMRMRNKGIVP 144 (759)
Q Consensus 112 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 144 (759)
.+|+.++.+|.+.|+++.|.++|++|.+.|+.|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 357777777777777777777777777766655
No 195
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.56 E-value=0.0017 Score=64.60 Aligned_cols=122 Identities=13% Similarity=0.117 Sum_probs=88.0
Q ss_pred CCChhcHHHHHHHHHHcCChhHHHHHHHHHHhC--CCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHH
Q 004362 318 EPDGFSYNAVIDGYCKAGMISSADKILNDAIFK--GFVPDEFTYCSLINGLCQDGDVDRAMAVYVKALEKGLKPSIVLYN 395 (759)
Q Consensus 318 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 395 (759)
+.+......++..+....+++.+..++.+.... ....-+.+..++++.|.+.|..+.++.++..=...|+-||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 445556666677766677777777777777654 222234455678888888888888888888877888888888888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 004362 396 TLIKGLSQQGLILQALQLMNEMSESGCCPDMWTYNIVINGLCKM 439 (759)
Q Consensus 396 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 439 (759)
.|++.+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 88888888888888888887777776666666766666666554
No 196
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.56 E-value=0.023 Score=52.93 Aligned_cols=66 Identities=9% Similarity=-0.020 Sum_probs=48.7
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHH---HHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 004362 75 LEGVHIGVMRNYGRRGKVQEAVDVFERMDFYNCEPTVLS---YNTIMNILVEYGYFSQVHKVYMRMRNKG 141 (759)
Q Consensus 75 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 141 (759)
+.......+..+...|++++|+..|+.+....+ .+... .-.++.++.+.+++++|...|++.++..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP-~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYP-FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 455666778888888999999999998876542 22222 2346677888899999999999988864
No 197
>PRK15331 chaperone protein SicA; Provisional
Probab=97.55 E-value=0.0074 Score=50.53 Aligned_cols=93 Identities=14% Similarity=-0.096 Sum_probs=66.5
Q ss_pred HHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh
Q 004362 570 GTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCK 649 (759)
Q Consensus 570 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 649 (759)
.....-+...|++++|..+|+-+... .|-+...|..|+.++-..+++++|+..|..+...+ .-|+..+...+.++..
T Consensus 41 Y~~Ay~~y~~Gk~~eA~~~F~~L~~~--d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~ 117 (165)
T PRK15331 41 YAHAYEFYNQGRLDEAETFFRFLCIY--DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLL 117 (165)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHH
Confidence 34444556678888888888877765 66667777777777778888888888877766443 3345556667777788
Q ss_pred cCChHHHHHHHHHHHh
Q 004362 650 TGGINSGYCLLLENID 665 (759)
Q Consensus 650 ~g~~~~A~~~~~~~~~ 665 (759)
.|+.+.|...|+.+++
T Consensus 118 l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 118 MRKAAKARQCFELVNE 133 (165)
T ss_pred hCCHHHHHHHHHHHHh
Confidence 8888888888877776
No 198
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.54 E-value=0.00054 Score=50.11 Aligned_cols=63 Identities=11% Similarity=0.122 Sum_probs=34.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH
Q 004362 610 NAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSLSTI 675 (759)
Q Consensus 610 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 675 (759)
.+|...+++++|++.++++++.+ |.++..|...+.++...|++++|...++++++ ..|+....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~--~~p~~~~~ 65 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE--LSPDDPDA 65 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH--HCCCcHHH
Confidence 34555556666666666655432 22355555555566666666666666666665 44554444
No 199
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.49 E-value=0.0022 Score=60.10 Aligned_cols=92 Identities=14% Similarity=0.082 Sum_probs=71.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHH
Q 004362 605 YNIMINAFSEKLNFYMAEKLFYEMSEKGCPPD----NYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPS----LSTIG 676 (759)
Q Consensus 605 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~ 676 (759)
|..-...+...|++++|+..|+.+++. .|+ +..+..++.+|...|++++|+..|+++++ ..|+ ...+.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~--~yP~s~~~~dAl~ 221 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVK--NYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCcchhHHHH
Confidence 333333446679999999999999976 455 35788899999999999999999999997 4443 33444
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHH
Q 004362 677 RVINCLCVDHRVHEAVGFVHLMVQ 700 (759)
Q Consensus 677 ~l~~~~~~~g~~~~A~~~~~~~~~ 700 (759)
.+...+...|++++|.+.++++.+
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555666789999999999999887
No 200
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.48 E-value=0.00025 Score=42.40 Aligned_cols=31 Identities=26% Similarity=0.369 Sum_probs=13.6
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCC
Q 004362 288 TYNTLMCGLCKNSKVVEAEYYLHKMVNEGLE 318 (759)
Q Consensus 288 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 318 (759)
+|+.++.+|.+.|+++.|.++|++|.+.|++
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~ 33 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVK 33 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 3444444444444444444444444444433
No 201
>PRK11906 transcriptional regulator; Provisional
Probab=97.48 E-value=0.0099 Score=58.72 Aligned_cols=77 Identities=14% Similarity=0.030 Sum_probs=36.0
Q ss_pred HHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004362 550 AFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMS 629 (759)
Q Consensus 550 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 629 (759)
|.+..+...+.+ +.|+.....+..+....|+++.|...|+++... .|+...+|...+......|+.++|.+.+++..
T Consensus 323 a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 323 ALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 334444444432 334444444444444444455555555555444 44444555555555555555555555555544
No 202
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.45 E-value=0.078 Score=47.66 Aligned_cols=139 Identities=14% Similarity=0.073 Sum_probs=92.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCccHHHHHHHH
Q 004362 499 YNSLLNGLCKAAKSEDVMETFKTMIEKRCVPNIITYSILGESLCKAHKITEAFNLLEEMENK-----GLTLDTVAFGTLI 573 (759)
Q Consensus 499 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~ 573 (759)
.+.++.++.-.|.+.-.+..+++.++...+-++.....++..-.+.|+.+.|...|++..+. +......+.....
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 44555566666677777777777777654556666777777777778888888887766643 2222333333444
Q ss_pred HHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHH
Q 004362 574 NGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYR 641 (759)
Q Consensus 574 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 641 (759)
..|.-++++.+|...|.+++.. .|.++...|+-+-+..-.|+..+|++..+.+++. .|.+.+-+
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~--D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRM--DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred hheecccchHHHHHHHhhcccc--CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhh
Confidence 5566667777888888777777 6667777777777777777788888888777754 45544433
No 203
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.0029 Score=60.67 Aligned_cols=95 Identities=9% Similarity=-0.046 Sum_probs=76.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004362 603 ATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSLSTIGRVINCL 682 (759)
Q Consensus 603 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 682 (759)
.++++++.++.+.+++.+|++.-.+.++.+ ++|...+.--+.+|...|+++.|+..|+++++ +.|++.....-+..|
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKL 334 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHH
Confidence 567889999999999999999999999775 56688888888999999999999999999999 999887776655555
Q ss_pred -HhcC-cHHHHHHHHHHHHH
Q 004362 683 -CVDH-RVHEAVGFVHLMVQ 700 (759)
Q Consensus 683 -~~~g-~~~~A~~~~~~~~~ 700 (759)
.+.. ..+...++|..|..
T Consensus 335 ~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 3333 33444678888865
No 204
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.42 E-value=0.04 Score=49.42 Aligned_cols=160 Identities=12% Similarity=0.061 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHH
Q 004362 513 EDVMETFKTMIEKRCVPNIITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRM 592 (759)
Q Consensus 513 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 592 (759)
+..++.|++-.. ..-..++..+...|.+.-....++++++...+.++.....+.+.-.+.||.+.|...|++.
T Consensus 166 ESsv~lW~KRl~-------~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~v 238 (366)
T KOG2796|consen 166 ESSIRLWRKRLG-------RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDV 238 (366)
T ss_pred hhHHHHHHHHHH-------HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 445555554332 2334556666667788888889999988766778888899999999999999999999976
Q ss_pred HHccC----CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 004362 593 EDQYK----ISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCLLLENIDKGF 668 (759)
Q Consensus 593 ~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 668 (759)
.+..+ .........+....|.-++++.+|...+.++...+ +.|+...|.=.-+..-.|+..+|++.++.+++ .
T Consensus 239 ek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~--~ 315 (366)
T KOG2796|consen 239 EKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQ--Q 315 (366)
T ss_pred HHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhc--c
Confidence 54322 22233444455566777788888888888887653 33455556655566677888999999999888 6
Q ss_pred CCCHHHHHHHHHHH
Q 004362 669 IPSLSTIGRVINCL 682 (759)
Q Consensus 669 ~p~~~~~~~l~~~~ 682 (759)
.|....-..++-++
T Consensus 316 ~P~~~l~es~~~nL 329 (366)
T KOG2796|consen 316 DPRHYLHESVLFNL 329 (366)
T ss_pred CCccchhhhHHHHH
Confidence 77655555444433
No 205
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.34 E-value=0.042 Score=53.64 Aligned_cols=168 Identities=12% Similarity=0.047 Sum_probs=77.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC---CCCccHHHHHHHHHHHHc---cCChhhHHHHHHHHHHccCCCCchhhHHHHH
Q 004362 536 ILGESLCKAHKITEAFNLLEEMENK---GLTLDTVAFGTLINGFCN---SGDLDGAYQLFRRMEDQYKISHTTATYNIMI 609 (759)
Q Consensus 536 ~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 609 (759)
.++-+|....+++.-+++.+.+... .+...+.+-..++.++.+ .|+.++|++++..+... ..++++.+|..++
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-~~~~~~d~~gL~G 224 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-DENPDPDTLGLLG 224 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-cCCCChHHHHHHH
Confidence 3333445555555555555555432 011122222233344444 55555555555553222 1334445555555
Q ss_pred HHHHh---------cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHH----HHHH----HHHHhCCC-CC-
Q 004362 610 NAFSE---------KLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSG----YCLL----LENIDKGF-IP- 670 (759)
Q Consensus 610 ~~~~~---------~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A----~~~~----~~~~~~g~-~p- 670 (759)
++|-. ...+++|+..|.+.-+. .||...=..++..+...|.-.+. .++- ....++|. .+
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 44421 12366777777776633 45533323333333334432111 1111 11112232 22
Q ss_pred -CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCchH
Q 004362 671 -SLSTIGRVINCLCVDHRVHEAVGFVHLMVQKGIVPEVV 708 (759)
Q Consensus 671 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 708 (759)
+...+..++.+..-.|+.++|.+..++|.. .+|+.|
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~--l~~~~W 339 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFK--LKPPAW 339 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhh--cCCcch
Confidence 333334555666667888888888888876 456655
No 206
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.33 E-value=0.24 Score=50.57 Aligned_cols=181 Identities=14% Similarity=0.097 Sum_probs=110.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHH
Q 004362 495 DVITYNSLLNGLCKAAKSEDVMETFKTMIEKRCVPNIITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLIN 574 (759)
Q Consensus 495 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 574 (759)
+..+|...+..-...|+.+...-.|++..-. ..-=...|...+.-....|+.+-|..++....+...+..+.+-..-..
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 4566777777777888888888887776532 000112344444444455888888888877776544433333333333
Q ss_pred HHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHH---HHHHHHHHcCCCCCHhhHHHH----HH-H
Q 004362 575 GFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAE---KLFYEMSEKGCPPDNYTYRIM----ID-S 646 (759)
Q Consensus 575 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~---~~~~~~~~~~~~p~~~~~~~l----~~-~ 646 (759)
.....|+++.|..+++++... .|.....-..-+....+.|+.+.+. +++....+- .-+..+...+ .+ .
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e--~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~--~~~~~i~~~l~~~~~r~~ 450 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESE--YPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG--KENNGILEKLYVKFARLR 450 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhh--CCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc--ccCcchhHHHHHHHHHHH
Confidence 445568899999999998888 4666666566667777888888887 444433322 1222222222 22 3
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHH-HHHHHH
Q 004362 647 FCKTGGINSGYCLLLENIDKGFIPSLSTIG-RVINCL 682 (759)
Q Consensus 647 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~-~l~~~~ 682 (759)
+.-.++.+.|..++.++.+ ..|++...+ .++...
T Consensus 451 ~~i~~d~~~a~~~l~~~~~--~~~~~k~~~~~~~~~~ 485 (577)
T KOG1258|consen 451 YKIREDADLARIILLEAND--ILPDCKVLYLELIRFE 485 (577)
T ss_pred HHHhcCHHHHHHHHHHhhh--cCCccHHHHHHHHHHH
Confidence 3446888999999999988 666655554 344433
No 207
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.32 E-value=0.27 Score=50.82 Aligned_cols=58 Identities=16% Similarity=0.231 Sum_probs=28.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc-CCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004362 501 SLLNGLCKAAKSEDVMETFKTMIEK-RCVPNIITYSILGESLCKAHKITEAFNLLEEME 558 (759)
Q Consensus 501 ~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 558 (759)
.+.+--...|..+.|++.--.+..- ++-|....|..+.-+.+....+....+.|-++.
T Consensus 1026 ilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe 1084 (1189)
T KOG2041|consen 1026 ILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLE 1084 (1189)
T ss_pred HHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Confidence 3333334456666666544333321 344555666665555555444444444444443
No 208
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.32 E-value=0.066 Score=52.29 Aligned_cols=182 Identities=11% Similarity=0.070 Sum_probs=89.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCChhcHHH
Q 004362 463 TFNTLIDGYCKQLKMEIAIEILNTMWSHG---VTPDVITYNSLLNGLCK---AAKSEDVMETFKTMIEKRCVPNIITYSI 536 (759)
Q Consensus 463 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 536 (759)
+...++-+|....+++..+++.+.+.... +.-....-...+.++.+ .|+.++|++++..++.....+++.++..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 33345555777777777777777776541 11122222234445555 6777777777777555545666777776
Q ss_pred HHHHHHhc---------CCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHH
Q 004362 537 LGESLCKA---------HKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNI 607 (759)
Q Consensus 537 l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 607 (759)
++..|-.. ...++|+..|.+.-+. .++...-..++..+...|...+...-.+++. ..
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~------------~~ 288 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIG------------VK 288 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHH------------HH
Confidence 66665221 1234444444444332 1222221222222222332221111111111 00
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 004362 608 MINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSLS 673 (759)
Q Consensus 608 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 673 (759)
+...+.+.|.. .-..|--.+.+++.++.-.|++++|...+++|.+ +.|...
T Consensus 289 l~~llg~kg~~-------------~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~--l~~~~W 339 (374)
T PF13281_consen 289 LSSLLGRKGSL-------------EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFK--LKPPAW 339 (374)
T ss_pred HHHHHHhhccc-------------cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhh--cCCcch
Confidence 11111111111 0112333446677788889999999999999998 556544
No 209
>PRK15331 chaperone protein SicA; Provisional
Probab=97.30 E-value=0.0028 Score=53.00 Aligned_cols=92 Identities=8% Similarity=-0.012 Sum_probs=71.8
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcC
Q 004362 46 MIDKLGFHGNFEEMENLLLEMRMDVDDSLLEGVHIGVMRNYGRRGKVQEAVDVFERMDFYNCEPTVLSYNTIMNILVEYG 125 (759)
Q Consensus 46 l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 125 (759)
.+.-+..+|++++|..+|+.+...++. +.+-+..++.++-..+++++|+..|......+ ..|+..+-....++...|
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~--n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFY--NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhC
Confidence 444455788888888888888887777 77788888888888888888888888766444 345555666788888888
Q ss_pred ChhHHHHHHHHHHHC
Q 004362 126 YFSQVHKVYMRMRNK 140 (759)
Q Consensus 126 ~~~~a~~~~~~~~~~ 140 (759)
+.+.|...|...+..
T Consensus 120 ~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 120 KAAKARQCFELVNER 134 (165)
T ss_pred CHHHHHHHHHHHHhC
Confidence 888888888888874
No 210
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.28 E-value=0.0017 Score=47.50 Aligned_cols=62 Identities=11% Similarity=0.070 Sum_probs=50.2
Q ss_pred HHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhh
Q 004362 574 NGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYT 639 (759)
Q Consensus 574 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 639 (759)
..|.+.+++++|+++++++... .|.++..|...+.++...|++++|.+.++++.+. .|+...
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~--~p~~~~ 64 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALEL--DPDDPELWLQRARCLFQLGRYEEALEDLERALEL--SPDDPD 64 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHh--CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH--CCCcHH
Confidence 5677888888888888888888 7888888888888888888888888888888865 465433
No 211
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.26 E-value=0.31 Score=50.37 Aligned_cols=28 Identities=7% Similarity=0.140 Sum_probs=15.4
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHH
Q 004362 37 KHTLLTYKYMIDKLGFHGNFEEMENLLL 64 (759)
Q Consensus 37 ~~~~~~~~~l~~~l~~~~~~~~A~~~~~ 64 (759)
.|.++.|..++..-...-.++.|++.|-
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFV 716 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFV 716 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhh
Confidence 4556666666655544445555555443
No 212
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.25 E-value=0.00043 Score=51.43 Aligned_cols=64 Identities=14% Similarity=0.216 Sum_probs=38.1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCC---CC-HhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004362 602 TATYNIMINAFSEKLNFYMAEKLFYEMSEK--GCP---PD-NYTYRIMIDSFCKTGGINSGYCLLLENID 665 (759)
Q Consensus 602 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 665 (759)
..+++.++.+|...|++++|+..|+++++. ... |+ ..++..++.++...|++++|+.+++++++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 445666666666666666666666665532 011 12 34566666777777777777777776654
No 213
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.24 E-value=0.0041 Score=47.74 Aligned_cols=29 Identities=17% Similarity=0.450 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 004362 199 EAYELFDEMLGMGISPDIATFNKLIHTLC 227 (759)
Q Consensus 199 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 227 (759)
..+.+|+.|+..+++|+..+|+.++..+.
T Consensus 87 ~LLtvYqDiL~~~lKP~~etYnivl~~Ll 115 (120)
T PF08579_consen 87 NLLTVYQDILSNKLKPNDETYNIVLGSLL 115 (120)
T ss_pred HHHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence 45566777777777777777777766554
No 214
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.23 E-value=0.023 Score=56.24 Aligned_cols=126 Identities=14% Similarity=0.160 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HhhHHHHHH
Q 004362 567 VAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPD-NYTYRIMID 645 (759)
Q Consensus 567 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~ 645 (759)
.+-..+..++.+.|+.++|++.++.+.+....-+...+...++.++...+.+.++..++.+-.+...+.. ..+|...+-
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALL 339 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALL 339 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHH
Confidence 3335566777788888888888888887633333556777788888888888888888887654333333 445555443
Q ss_pred HHHhcCC---------------hHHHHHHHHHHHhCCCCCCHHHHHHHH-------HHHHhcCcHHHHHHHH
Q 004362 646 SFCKTGG---------------INSGYCLLLENIDKGFIPSLSTIGRVI-------NCLCVDHRVHEAVGFV 695 (759)
Q Consensus 646 ~~~~~g~---------------~~~A~~~~~~~~~~g~~p~~~~~~~l~-------~~~~~~g~~~~A~~~~ 695 (759)
.....|+ -..|.+.+.++++ .+|..+.|..=. ..+.+.|+ .||+.+-
T Consensus 340 kaRav~d~fs~e~a~rRGls~ae~~aveAi~RAve--fNPHVp~YLLe~K~LilPPehilkrGD-SEAiaYA 408 (539)
T PF04184_consen 340 KARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVE--FNPHVPKYLLEMKSLILPPEHILKRGD-SEAIAYA 408 (539)
T ss_pred HHHhhccccCchhhhhcCCChhHHHHHHHHHHHHH--hCCCCchhhhccCCCCCChHHhcCCCc-HHHHHHH
Confidence 3333333 1346788889888 667665553211 13345665 6666543
No 215
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.23 E-value=0.31 Score=49.81 Aligned_cols=392 Identities=13% Similarity=0.060 Sum_probs=178.6
Q ss_pred CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh-hcHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHH
Q 004362 285 DVVTYNTLMCGLCKNSKVVEAEYYLHKMVNEGLEPDG-FSYNAVIDGYCKAGMISSADKILNDAIFKGFVPDEFTYCSLI 363 (759)
Q Consensus 285 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 363 (759)
+...|+.++.---...+.+.+...+..++.. -|.. .-|......-.+.|..+.+.++|++.+.. ++.+...|....
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHH
Confidence 4455666665444444555666666666654 2322 23444445556667777888888777654 344444554444
Q ss_pred HHHH-hcCCHHHHHHHHHHHHHc-CCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH---
Q 004362 364 NGLC-QDGDVDRAMAVYVKALEK-GLK-PSIVLYNTLIKGLSQQGLILQALQLMNEMSESGCCPDMWTYNIVINGLC--- 437 (759)
Q Consensus 364 ~~~~-~~~~~~~A~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--- 437 (759)
..+. ..|+.+.....|+.+... |.. .+...|...+.--..++++.....+++++.+. | ...++.....|.
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei---P-~~~~~~~f~~f~~~l 196 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI---P-LHQLNRHFDRFKQLL 196 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh---h-hhHhHHHHHHHHHHH
Confidence 4333 356666666777666553 211 14455666666666677777777777777764 1 122222222221
Q ss_pred hc------CChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHH------
Q 004362 438 KM------GCVSDANNLVNDAISKGYIPDIFTFNTLIDGYCKQLKMEIAIEILNTMWSHGVTPDV--ITYNSLL------ 503 (759)
Q Consensus 438 ~~------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~l~------ 503 (759)
.. ...+++.++-...... ..-...+.. +..+=..+...+-+.+. ...+.+.
T Consensus 197 ~~~~~~~l~~~d~~~~l~~~~~~~-------------~~~~~~~~~--~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~ 261 (577)
T KOG1258|consen 197 NQNEEKILLSIDELIQLRSDVAER-------------SKITHSQEP--LEELEIGVKDSTDPSKSLTEEKTILKRIVSIH 261 (577)
T ss_pred hcCChhhhcCHHHHHHHhhhHHhh-------------hhcccccCh--hHHHHHHHhhccCccchhhHHHHHHHHHHHHH
Confidence 11 1112222111111110 000000000 11111111111000000 0000111
Q ss_pred -HHHHhcCCHHHHHHHHHHHHHc---CC----CCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHH
Q 004362 504 -NGLCKAAKSEDVMETFKTMIEK---RC----VPNIITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLING 575 (759)
Q Consensus 504 -~~~~~~~~~~~a~~~~~~~~~~---~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 575 (759)
.++.......+..-.|+.-++. .+ +++..+|...+.--...|+.+.+.-++++..-. +..=...|...+..
T Consensus 262 ~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~ 340 (577)
T KOG1258|consen 262 EKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARW 340 (577)
T ss_pred HHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHH
Confidence 1111122222333333333332 11 123345555555556677777777777776532 22233455566666
Q ss_pred HHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCChH
Q 004362 576 FCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPD-NYTYRIMIDSFCKTGGIN 654 (759)
Q Consensus 576 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 654 (759)
....|+.+-|..++....+. ..|..+.+...-+...-..|+++.|..+++++.+. + |+ ...-..-+....+.|+.+
T Consensus 341 m~~~~~~~~~~~~~~~~~~i-~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e-~-pg~v~~~l~~~~~e~r~~~~~ 417 (577)
T KOG1258|consen 341 MESSGDVSLANNVLARACKI-HVKKTPIIHLLEARFEESNGNFDDAKVILQRIESE-Y-PGLVEVVLRKINWERRKGNLE 417 (577)
T ss_pred HHHcCchhHHHHHHHhhhhh-cCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhh-C-CchhhhHHHHHhHHHHhcchh
Confidence 66667777777666665544 13333333333333344456777777777777664 2 54 222222333445666666
Q ss_pred HHH---HHHHHHHhCCCCCCHHHHHHHHHHH-----HhcCcHHHHHHHHHHHHHCCCCCc
Q 004362 655 SGY---CLLLENIDKGFIPSLSTIGRVINCL-----CVDHRVHEAVGFVHLMVQKGIVPE 706 (759)
Q Consensus 655 ~A~---~~~~~~~~~g~~p~~~~~~~l~~~~-----~~~g~~~~A~~~~~~~~~~~~~p~ 706 (759)
.+. .++....+.-..+ .....+...+ .-.++.+.|...+.++.+ +.|+
T Consensus 418 ~~~~~~~l~s~~~~~~~~~--~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~--~~~~ 473 (577)
T KOG1258|consen 418 DANYKNELYSSIYEGKENN--GILEKLYVKFARLRYKIREDADLARIILLEAND--ILPD 473 (577)
T ss_pred hhhHHHHHHHHhcccccCc--chhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhh--cCCc
Confidence 666 3333322211111 1111111111 234667777777777765 4555
No 216
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.23 E-value=0.11 Score=47.06 Aligned_cols=47 Identities=13% Similarity=0.129 Sum_probs=24.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCcHHHH
Q 004362 643 MIDSFCKTGGINSGYCLLLENIDKGFIPSL----STIGRVINCLCVDHRVHEA 691 (759)
Q Consensus 643 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~g~~~~A 691 (759)
++..|.+.|.+..|+..++.+++ --|+. .....+...+.+.|..+.|
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~--~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIE--NYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHH--HSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHH--HCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 44556666666666666666665 23332 2223444555566666533
No 217
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.20 E-value=0.027 Score=58.33 Aligned_cols=118 Identities=12% Similarity=-0.053 Sum_probs=84.0
Q ss_pred cCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CC-CCCHhhHHHHHHHHHhcCChHH
Q 004362 579 SGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEK--GC-PPDNYTYRIMIDSFCKTGGINS 655 (759)
Q Consensus 579 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~-~p~~~~~~~l~~~~~~~g~~~~ 655 (759)
..+.+.|.++++.+... .|+.......-++.+...|+.++|++.|+++... .. +....++.-+++++...++|++
T Consensus 246 ~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 45677888888888887 6766666666678888888999999998876532 11 1124566778888888999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHH-HHHHHH-HhcCcH-------HHHHHHHHHHHH
Q 004362 656 GYCLLLENIDKGFIPSLSTIG-RVINCL-CVDHRV-------HEAVGFVHLMVQ 700 (759)
Q Consensus 656 A~~~~~~~~~~g~~p~~~~~~-~l~~~~-~~~g~~-------~~A~~~~~~~~~ 700 (759)
|...|.++.+ ...-...++ .+..++ ...|+. ++|.+++.++..
T Consensus 324 A~~~f~~L~~--~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 324 AAEYFLRLLK--ESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHh--ccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 9999999887 444333333 333333 677888 888888888754
No 218
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.19 E-value=0.25 Score=47.97 Aligned_cols=105 Identities=19% Similarity=0.185 Sum_probs=68.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHH
Q 004362 254 FNMFIQGLCRKGAISEAISLLDSLGREDLTPDVVTYNTLMCGLCKNSKVVEAEYYLHKMVNEGLEPDGFSYNAVIDGYCK 333 (759)
Q Consensus 254 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 333 (759)
.+..+.-+...|+...|.++..+.. .|+...|...+.+++..++|++-.++... .-++..|..++..|.+
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLK 249 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHH
Confidence 3444555666777777777766665 67777777777777777777766654321 1244667777777777
Q ss_pred cCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHH
Q 004362 334 AGMISSADKILNDAIFKGFVPDEFTYCSLINGLCQDGDVDRAMAV 378 (759)
Q Consensus 334 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 378 (759)
.|...+|..++..+ .+..-+..|.++|++.+|.+.
T Consensus 250 ~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 250 YGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred CCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHH
Confidence 77777777666541 124456667777777777654
No 219
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.17 E-value=0.0039 Score=61.35 Aligned_cols=66 Identities=12% Similarity=-0.099 Sum_probs=54.5
Q ss_pred CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-H---hhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004362 598 ISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPD-N---YTYRIMIDSFCKTGGINSGYCLLLENID 665 (759)
Q Consensus 598 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 665 (759)
.|++...++.++.+|...|++++|+..|+++++. .|+ . .+|..++.+|...|++++|+..++++++
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6778888888888888888888888888888854 566 3 3588888888888888888888888888
No 220
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.15 E-value=0.005 Score=47.28 Aligned_cols=42 Identities=12% Similarity=0.346 Sum_probs=24.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHh
Q 004362 222 LIHTLCKKGNVRESEKLFNKVLKRGV-SPNLFTFNMFIQGLCR 263 (759)
Q Consensus 222 l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 263 (759)
.|..+...+++...-.+|+.+++.|+ .|+..+|+.++...++
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~ 73 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAK 73 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence 34444455666666666666666666 5666666666655544
No 221
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.14 E-value=0.00056 Score=39.73 Aligned_cols=29 Identities=28% Similarity=0.639 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 004362 113 SYNTIMNILVEYGYFSQVHKVYMRMRNKG 141 (759)
Q Consensus 113 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 141 (759)
+|+.++++|.+.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 46666666666666666666666666654
No 222
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.13 E-value=0.0044 Score=61.04 Aligned_cols=68 Identities=9% Similarity=-0.046 Sum_probs=61.6
Q ss_pred CCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchh---hHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004362 562 LTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTA---TYNIMINAFSEKLNFYMAEKLFYEMSEK 631 (759)
Q Consensus 562 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 631 (759)
-+.+...++.+..+|...|++++|+..|++.++. .|++.. +|++++.+|...|++++|+..++++++.
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3557788999999999999999999999999998 787774 5999999999999999999999999964
No 223
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.11 E-value=0.21 Score=45.45 Aligned_cols=186 Identities=13% Similarity=0.091 Sum_probs=103.8
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCC-CccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHH
Q 004362 38 HTLLTYKYMIDKLGFHGNFEEMENLLLEMRMDVDD-SLLEGVHIGVMRNYGRRGKVQEAVDVFERMDFYNCEPTVLSYNT 116 (759)
Q Consensus 38 ~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 116 (759)
|....|...+. -.+.|+|++|.+.|+.+..+.|. +-...+...++.++.+.++++.|+..+++.....+.....-|..
T Consensus 33 p~~~LY~~g~~-~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~ 111 (254)
T COG4105 33 PASELYNEGLT-ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAY 111 (254)
T ss_pred CHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence 44445555444 45889999999999999988865 22355777788889999999999999999885543333334555
Q ss_pred HHHHHHHc-------CChh---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHhhchhCCCCCCHHhHHH
Q 004362 117 IMNILVEY-------GYFS---QVHKVYMRMRNKGIVPDVYTFVIRIKSFCRTRRPHVALRLLKNMPSQGFEPNAVAYCT 186 (759)
Q Consensus 117 l~~~~~~~-------~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 186 (759)
.|.+++.. ++.. .|..-|.+++.. -||+. =...|...+..+...- ...=..
T Consensus 112 YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~r--yPnS~-------------Ya~dA~~~i~~~~d~L----A~~Em~ 172 (254)
T COG4105 112 YLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQR--YPNSR-------------YAPDAKARIVKLNDAL----AGHEMA 172 (254)
T ss_pred HHHHHHHhccCCccccCHHHHHHHHHHHHHHHHH--CCCCc-------------chhhHHHHHHHHHHHH----HHHHHH
Confidence 56555532 1222 223333333332 12211 0011111111111000 000123
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCh---hhHHHHHHHHHhcCChhHHHHHHHHHhh
Q 004362 187 LIAGFYEENHNVEAYELFDEMLGMGISPDI---ATFNKLIHTLCKKGNVRESEKLFNKVLK 244 (759)
Q Consensus 187 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 244 (759)
+...|.+.|.+..|..-+++|.+. .+-.. ..+..+..+|...|-.++|...-.-+..
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 445677777777787777777765 22122 2344555677777777777666554443
No 224
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.05 E-value=0.00097 Score=38.70 Aligned_cols=25 Identities=36% Similarity=0.590 Sum_probs=10.0
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHH
Q 004362 289 YNTLMCGLCKNSKVVEAEYYLHKMV 313 (759)
Q Consensus 289 ~~~l~~~~~~~~~~~~a~~~~~~~~ 313 (759)
|+.++++|++.|++++|.++|++|.
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHh
Confidence 3333444444444444444443333
No 225
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.04 E-value=0.023 Score=48.45 Aligned_cols=69 Identities=19% Similarity=0.236 Sum_probs=34.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCCCCHHH
Q 004362 605 YNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCLLLENID-----KGFIPSLST 674 (759)
Q Consensus 605 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~p~~~~ 674 (759)
...++..+...|++++|+.+++++.... |-|...|..++.+|...|+..+|+..|++..+ .|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3444555555666666666666666442 33455666666666666666666666655432 255555443
No 226
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.02 E-value=0.017 Score=52.79 Aligned_cols=99 Identities=11% Similarity=0.053 Sum_probs=76.4
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhcCCC-CccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCC--CCCHHHHHHHH
Q 004362 42 TYKYMIDKLGFHGNFEEMENLLLEMRMDVDD-SLLEGVHIGVMRNYGRRGKVQEAVDVFERMDFYNC--EPTVLSYNTIM 118 (759)
Q Consensus 42 ~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~ 118 (759)
.|...+.. .+.|++.+|...|...++..|. +....++++|+.++..+|++++|...|..+....+ +.-+..+--+.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 56665554 4778899999999999888866 23456889999999999999999999988874331 22346677778
Q ss_pred HHHHHcCChhHHHHHHHHHHHCC
Q 004362 119 NILVEYGYFSQVHKVYMRMRNKG 141 (759)
Q Consensus 119 ~~~~~~~~~~~a~~~~~~~~~~~ 141 (759)
.+..+.|+.++|..+|+++.+.-
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHC
Confidence 88888999999999999988863
No 227
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.02 E-value=0.016 Score=49.46 Aligned_cols=70 Identities=23% Similarity=0.273 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH-----CCCCCCHHH
Q 004362 78 VHIGVMRNYGRRGKVQEAVDVFERMDFYNCEPTVLSYNTIMNILVEYGYFSQVHKVYMRMRN-----KGIVPDVYT 148 (759)
Q Consensus 78 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~ 148 (759)
+...++..+...|+++.|+...+++.... |.+...|..+|.+|...|+...|.+.|+++.+ .|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 34445555555666666666666555443 44555566666666666666666666655532 255555544
No 228
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.99 E-value=0.013 Score=46.02 Aligned_cols=90 Identities=16% Similarity=0.068 Sum_probs=67.3
Q ss_pred HHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HhhHHHHHHHHHhcC
Q 004362 575 GFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPD---NYTYRIMIDSFCKTG 651 (759)
Q Consensus 575 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g 651 (759)
+....|+++.|++.|.+.+.. .|..+..||+-+.++.-+|+.++|+.-++++++..-+.. ...|..-+..|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l--~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL--APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh--cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 566778888888888888887 778888888888888888888888888888876521212 123444555777888
Q ss_pred ChHHHHHHHHHHHhC
Q 004362 652 GINSGYCLLLENIDK 666 (759)
Q Consensus 652 ~~~~A~~~~~~~~~~ 666 (759)
+-+.|..=|+.+.+-
T Consensus 130 ~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 130 NDDAARADFEAAAQL 144 (175)
T ss_pred chHHHHHhHHHHHHh
Confidence 888888888887763
No 229
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.87 E-value=0.0019 Score=47.91 Aligned_cols=65 Identities=15% Similarity=0.221 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHccCChhhHHHHHHHHHHccC-C----CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004362 566 TVAFGTLINGFCNSGDLDGAYQLFRRMEDQYK-I----SHTTATYNIMINAFSEKLNFYMAEKLFYEMSE 630 (759)
Q Consensus 566 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 630 (759)
..++..+..+|...|++++|+..|+++.+... . |....++..++.++...|++++|++++++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34567777778888888888888877764311 1 11256677788888888888888888887763
No 230
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=96.87 E-value=0.011 Score=50.10 Aligned_cols=113 Identities=10% Similarity=0.011 Sum_probs=70.9
Q ss_pred hhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcC----------CHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhc
Q 004362 582 LDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKL----------NFYMAEKLFYEMSEKGCPPD-NYTYRIMIDSFCKT 650 (759)
Q Consensus 582 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 650 (759)
++.|.+.++..... .|.|...++.-+.++.... -+++|+.=|++++ .+.|+ ..++..++.+|...
T Consensus 7 FE~ark~aea~y~~--nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL--~I~P~~hdAlw~lGnA~ts~ 82 (186)
T PF06552_consen 7 FEHARKKAEAAYAK--NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEAL--KINPNKHDALWCLGNAYTSL 82 (186)
T ss_dssp HHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHH--HH-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHH--hcCCchHHHHHHHHHHHHHH
Confidence 45566666666555 6777776666666555432 2344555555555 34687 78888888888665
Q ss_pred C-----------ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCc
Q 004362 651 G-----------GINSGYCLLLENIDKGFIPSLSTIGRVINCLCVDHRVHEAVGFVHLMVQKGIVPE 706 (759)
Q Consensus 651 g-----------~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 706 (759)
+ .+++|..+|+++.. .+|+++.|..-+... ++|-++..++.+++..+.
T Consensus 83 A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~------~kap~lh~e~~~~~~~~q 141 (186)
T PF06552_consen 83 AFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMA------AKAPELHMEIHKQGLGQQ 141 (186)
T ss_dssp HHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH------HTHHHHHHHHHHSSS---
T ss_pred HhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHH------HhhHHHHHHHHHHHhhhh
Confidence 4 26778888888888 889999998766543 467788888877766554
No 231
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.84 E-value=0.44 Score=44.89 Aligned_cols=197 Identities=16% Similarity=0.089 Sum_probs=91.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHH-H
Q 004362 498 TYNSLLNGLCKAAKSEDVMETFKTMIEK-RCVPNIITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLIN-G 575 (759)
Q Consensus 498 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~ 575 (759)
........+...++...+...+...... ........+......+...+++..+...+.........+ ......... +
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 139 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHH
Confidence 3334444444445555554444444331 112233334444444444455555555555554432111 111111112 4
Q ss_pred HHccCChhhHHHHHHHHHHccCCC---CchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHhhHHHHHHHHHhcC
Q 004362 576 FCNSGDLDGAYQLFRRMEDQYKIS---HTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPP-DNYTYRIMIDSFCKTG 651 (759)
Q Consensus 576 ~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 651 (759)
+...|+++.|...+.+.... .| .....+......+...++.++++..+.++.... +. ....+..+...+...+
T Consensus 140 ~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 140 LYELGDYEEALELYEKALEL--DPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHcCCHHHHHHHHHHHHhc--CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHcc
Confidence 55556666666666655332 22 222333333334455566666666666665431 22 2455555556666666
Q ss_pred ChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 004362 652 GINSGYCLLLENIDKGFIPS-LSTIGRVINCLCVDHRVHEAVGFVHLMVQ 700 (759)
Q Consensus 652 ~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 700 (759)
+++.|...+..+.. ..|+ ...+......+...|..+++...+++...
T Consensus 217 ~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 217 KYEEALEYYEKALE--LDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred cHHHHHHHHHHHHh--hCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666666666665 4444 22333333333344556666666655554
No 232
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.78 E-value=0.03 Score=45.85 Aligned_cols=84 Identities=17% Similarity=0.142 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCc-cHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHH
Q 004362 40 LLTYKYMIDKLGFHGNFEEMENLLLEMRMDVDDSL-LEGVHIGVMRNYGRRGKVQEAVDVFERMDFYNCEPTVLSYNTIM 118 (759)
Q Consensus 40 ~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 118 (759)
+..+-.-+....+.|++.+|.+.|+.+..+.|.+. ...+...++.+|.+.++++.|+..++++...++..--.-|...+
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 33344455556688999999999999999886633 34577889999999999999999999988766433223355555
Q ss_pred HHHHH
Q 004362 119 NILVE 123 (759)
Q Consensus 119 ~~~~~ 123 (759)
.+++.
T Consensus 90 ~gL~~ 94 (142)
T PF13512_consen 90 RGLSY 94 (142)
T ss_pred HHHHH
Confidence 55443
No 233
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.72 E-value=0.29 Score=43.70 Aligned_cols=30 Identities=17% Similarity=0.166 Sum_probs=21.0
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Q 004362 39 TLLTYKYMIDKLGFHGNFEEMENLLLEMRM 68 (759)
Q Consensus 39 ~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~ 68 (759)
....|.....++-.+.+|++|...+.++.+
T Consensus 30 aas~yekAAvafRnAk~feKakdcLlkA~~ 59 (308)
T KOG1585|consen 30 AASLYEKAAVAFRNAKKFEKAKDCLLKASK 59 (308)
T ss_pred hHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 445666667777777788888877776664
No 234
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.72 E-value=0.65 Score=45.19 Aligned_cols=285 Identities=14% Similarity=0.099 Sum_probs=156.1
Q ss_pred CHHHHHHHHhcCCChHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Q 004362 6 LPKHVAAVVKHQKNPLTALEMFNSVKREDGFKHTLLTYKYMIDKLGFHGNFEEMENLLLEMRMDVDDSLLEGVHIGVMRN 85 (759)
Q Consensus 6 ~~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 85 (759)
+...++...-..|+++.|..+.+. .|.+.- -+..|.+.|+.+.| +.++.+.+. +.-++..++..
T Consensus 2 S~a~IA~~A~~~GR~~LA~~LL~~-------Ep~~~~---qVplLL~m~e~e~A---L~kAi~SgD---~DLi~~vLl~L 65 (319)
T PF04840_consen 2 SYAEIARKAYEEGRPKLATKLLEL-------EPRASK---QVPLLLKMGEDELA---LNKAIESGD---TDLIYLVLLHL 65 (319)
T ss_pred CHHHHHHHHHHcChHHHHHHHHHc-------CCChHH---HHHHHhcCCchHHH---HHHHHHcCC---ccHHHHHHHHH
Confidence 456677777889999999998875 233332 23445677887777 556666552 22345545443
Q ss_pred HHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhH
Q 004362 86 YGRRGKVQEAVDVFERMDFYNCEPTVLSYNTIMNILVEYGYFSQVHKVYMRMRNKGIVPDVYTFVIRIKSFCRTRRPHVA 165 (759)
Q Consensus 86 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 165 (759)
--+.. .. +++ .+... .|.. ..+...|++..+.+...++|.+--+ ........+-.++ +..+.+.-
T Consensus 66 ~~~l~-~s---~f~-~il~~--~p~a---~~l~~~~~r~~~~~~L~~~y~q~d~----~~~~a~~~l~~~~-~~~~~~~~ 130 (319)
T PF04840_consen 66 KRKLS-LS---QFF-KILNQ--NPVA---SNLYKKYCREQDRELLKDFYYQEDR----FQELANLHLQEAL-SQKDVEEK 130 (319)
T ss_pred HHhCC-HH---HHH-HHHHh--Ccch---HHHHHHHHHhccHHHHHHHHHhcch----HHHHHHHHHHHHH-hCCChHHH
Confidence 33222 11 222 33322 1222 2334456665565555555543211 1111122222222 22333333
Q ss_pred HHHHhhchhC-CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhh
Q 004362 166 LRLLKNMPSQ-GFEPNAVAYCTLIAGFYEENHNVEAYELFDEMLGMGISPDIATFNKLIHTLCKKGNVRESEKLFNKVLK 244 (759)
Q Consensus 166 ~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 244 (759)
...+..+.+. +-..+......++.-..+.-+++ +-+++-.. ......+.+..+.-+...|+...|.++-.+..
T Consensus 131 ~~~L~~a~~~y~~~k~~~f~~~~~e~q~~Ll~~Q---~~Le~~~~--~~f~~~Sl~~Ti~~li~~~~~k~A~kl~k~Fk- 204 (319)
T PF04840_consen 131 ISFLKQAQKLYSKSKNDAFEAKLIEEQIKLLEYQ---KELEEKYN--TNFVGLSLNDTIRKLIEMGQEKQAEKLKKEFK- 204 (319)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH---HHHHHHhc--cchhcCCHHHHHHHHHHCCCHHHHHHHHHHcC-
Confidence 3333222221 00011111112221111110111 01111111 11122345666777888899998888877662
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhcH
Q 004362 245 RGVSPNLFTFNMFIQGLCRKGAISEAISLLDSLGREDLTPDVVTYNTLMCGLCKNSKVVEAEYYLHKMVNEGLEPDGFSY 324 (759)
Q Consensus 245 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 324 (759)
.|+..-|...+.+++..++|++-.++... ..++..|..++.+|.+.|...+|..+...+ .+
T Consensus 205 ---v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA~~yI~k~----------~~ 265 (319)
T PF04840_consen 205 ---VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEASKYIPKI----------PD 265 (319)
T ss_pred ---CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHHHHHHHhC----------Ch
Confidence 46888999999999999999988876432 345688999999999999999999887762 22
Q ss_pred HHHHHHHHHcCChhHHHHHHHH
Q 004362 325 NAVIDGYCKAGMISSADKILND 346 (759)
Q Consensus 325 ~~ll~~~~~~~~~~~a~~~~~~ 346 (759)
..-+..|.+.|++.+|.+.--+
T Consensus 266 ~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 266 EERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHH
Confidence 4567788999999988766443
No 235
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.72 E-value=0.032 Score=51.01 Aligned_cols=94 Identities=15% Similarity=0.227 Sum_probs=52.4
Q ss_pred HHHHHHHHHHccCChhhHHHHHHHHHHccCCCCc---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HhhHH
Q 004362 568 AFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHT---TATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPD---NYTYR 641 (759)
Q Consensus 568 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~ 641 (759)
.|+.-+. +.+.|++..|...|...++. .|.+ +.++..|+.++...|++++|...|..+.+. .+.. +..+.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~--YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~-~P~s~KApdall 219 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKK--YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKD-YPKSPKAPDALL 219 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHc--CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHh-CCCCCCChHHHH
Confidence 4444443 33556677777777777766 4433 344555556666666666666666555543 1111 34455
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHh
Q 004362 642 IMIDSFCKTGGINSGYCLLLENID 665 (759)
Q Consensus 642 ~l~~~~~~~g~~~~A~~~~~~~~~ 665 (759)
-|+.+..+.|+.++|...|++.++
T Consensus 220 Klg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 220 KLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHH
Confidence 555555556666666666666555
No 236
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.038 Score=53.34 Aligned_cols=95 Identities=8% Similarity=-0.014 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HhhHHHHHH
Q 004362 567 VAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPD-NYTYRIMID 645 (759)
Q Consensus 567 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~ 645 (759)
.++..+..+|.+.+++..|++....++.. .|++.-....-+.++...|+++.|+..|+++++. .|+ ..+-..|+.
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~--~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~ 333 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLEL--DPNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIK 333 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhc--CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHH
Confidence 35677888999999999999999999998 8999999999999999999999999999999965 676 444555555
Q ss_pred HHHhcCChH-HHHHHHHHHHh
Q 004362 646 SFCKTGGIN-SGYCLLLENID 665 (759)
Q Consensus 646 ~~~~~g~~~-~A~~~~~~~~~ 665 (759)
+-.+..++. ...++|.+|..
T Consensus 334 l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 334 LKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 444444444 44778888876
No 237
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.70 E-value=0.16 Score=44.29 Aligned_cols=49 Identities=12% Similarity=-0.033 Sum_probs=23.0
Q ss_pred ChHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 004362 55 NFEEMENLLLEMRMDVDDSLLEGVHIGVMRNYGRRGKVQEAVDVFERMDFY 105 (759)
Q Consensus 55 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 105 (759)
-+..|+--|..+....|. -+++++-++.-+...|+++.|.+.|+...+.
T Consensus 80 L~~LAR~DftQaLai~P~--m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL 128 (297)
T COG4785 80 LRALARNDFSQALAIRPD--MPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL 128 (297)
T ss_pred HHHHHhhhhhhhhhcCCC--cHHHHHHHHHHHHhcccchHHHHHhhhHhcc
Confidence 333344444444444444 4445555555555555555555555544433
No 238
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.63 E-value=0.017 Score=50.66 Aligned_cols=36 Identities=19% Similarity=0.227 Sum_probs=24.2
Q ss_pred ChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHHcCC
Q 004362 301 KVVEAEYYLHKMVNEGLEPDGFSYNAVIDGYCKAGM 336 (759)
Q Consensus 301 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 336 (759)
+-+-|++++++|...|+-||..++..+++.+.+.+.
T Consensus 118 Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 118 QQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 345567777777777777777777777777655543
No 239
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.62 E-value=0.042 Score=48.27 Aligned_cols=102 Identities=27% Similarity=0.303 Sum_probs=56.1
Q ss_pred CHhhHHHHHHHHH-----hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcH
Q 004362 460 DIFTFNTLIDGYC-----KQLKMEIAIEILNTMWSHGVTPDVITYNSLLNGLCKAAKSEDVMETFKTMIEKRCVPNIITY 534 (759)
Q Consensus 460 ~~~~~~~l~~~~~-----~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 534 (759)
+..++..+++.|. +.|..+-....+..|.+.|+.-|..+|+.|+.++-+ |.+- -..+|+.+--
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~---------- 113 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFM---------- 113 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhc----------
Confidence 5555555555554 346666677777777777777777777777776654 2211 0111111110
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccC
Q 004362 535 SILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSG 580 (759)
Q Consensus 535 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 580 (759)
-.-.+-+-|++++++|...|+-||.+++..++..+.+.+
T Consensus 114 -------hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 114 -------HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred -------cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 011233446666666666666666666666666664433
No 240
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.60 E-value=0.18 Score=46.69 Aligned_cols=126 Identities=13% Similarity=0.114 Sum_probs=80.7
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcC
Q 004362 46 MIDKLGFHGNFEEMENLLLEMRMDVDDSLLEGVHIGVMRNYGRRGKVQEAVDVFERMDFYNCEPTVLSYNTIMNILVEYG 125 (759)
Q Consensus 46 l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 125 (759)
-+..+...|++.+|..+|..+....+. +.++...++++|...|+.+.|..++..++...-.........-+..+.+..
T Consensus 140 ~~~~~~~~e~~~~a~~~~~~al~~~~~--~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa 217 (304)
T COG3118 140 EAKELIEAEDFGEAAPLLKQALQAAPE--NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAA 217 (304)
T ss_pred HhhhhhhccchhhHHHHHHHHHHhCcc--cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHh
Confidence 344566889999999999999988887 778888899999999999999999988774321112222222344455554
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHhhchhC
Q 004362 126 YFSQVHKVYMRMRNKGIVPDVYTFVIRIKSFCRTRRPHVALRLLKNMPSQ 175 (759)
Q Consensus 126 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 175 (759)
...+...+-.+.... +.|...-..+...+...|+.+.|.+.+-.+.++
T Consensus 218 ~~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 218 ATPEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred cCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 444444444444332 225555556666666667777666655554443
No 241
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.59 E-value=0.32 Score=49.75 Aligned_cols=92 Identities=11% Similarity=0.183 Sum_probs=55.3
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH------
Q 004362 601 TTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSLST------ 674 (759)
Q Consensus 601 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~------ 674 (759)
+..+...++.-+.+...+.-|.++|++|-+ ..+++......++|.+|..+.++..+ +.|+...
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwL 814 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWL 814 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCcc--ccccccchHHHHh
Confidence 344445555555556666777777776632 23466667788888888888887666 4454221
Q ss_pred -----HHHHHHHHHhcCcHHHHHHHHHHHHHCCC
Q 004362 675 -----IGRVINCLCVDHRVHEAVGFVHLMVQKGI 703 (759)
Q Consensus 675 -----~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 703 (759)
+...-.++.++|+..||..+++++....+
T Consensus 815 AE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnnav 848 (1081)
T KOG1538|consen 815 AENDRFEEAQKAFHKAGRQREAVQVLEQLTNNAV 848 (1081)
T ss_pred hhhhhHHHHHHHHHHhcchHHHHHHHHHhhhhhh
Confidence 11222344567777777777777665333
No 242
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.58 E-value=0.67 Score=43.61 Aligned_cols=224 Identities=15% Similarity=0.044 Sum_probs=146.7
Q ss_pred ChHHHHHHHHHHHHCCCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004362 441 CVSDANNLVNDAISKGYI-PDIFTFNTLIDGYCKQLKMEIAIEILNTMWSH-GVTPDVITYNSLLNGLCKAAKSEDVMET 518 (759)
Q Consensus 441 ~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 518 (759)
....+...+......... ............+...+.+..+...+...... ........+......+...++...+.+.
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
T COG0457 38 ELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALEL 117 (291)
T ss_pred hHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHH
Confidence 334444444444433211 12455566666677777777777777766542 1233455566666666677777788887
Q ss_pred HHHHHHcCCCCChhcHHHHHH-HHHhcCCHHHHHHHHHHHHHCCC--CccHHHHHHHHHHHHccCChhhHHHHHHHHHHc
Q 004362 519 FKTMIEKRCVPNIITYSILGE-SLCKAHKITEAFNLLEEMENKGL--TLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQ 595 (759)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 595 (759)
+.........+ ......... .+...|+++.+...+.+...... ......+......+...++.+.+...+......
T Consensus 118 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 196 (291)
T COG0457 118 LEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL 196 (291)
T ss_pred HHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh
Confidence 77777643222 122223333 67788888888888888865211 123333444444567788899999999998887
Q ss_pred cCCCC-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 004362 596 YKISH-TTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPD-NYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPS 671 (759)
Q Consensus 596 ~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 671 (759)
.+. ....+..+...+...++++.|...+...... .|+ ...+..+...+...|.++.+...+.+..+ ..|.
T Consensus 197 --~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 268 (291)
T COG0457 197 --NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALE--LDPD 268 (291)
T ss_pred --CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH--hCcc
Confidence 565 5777888888899999999999999998854 454 55566666666677789999999999988 5565
No 243
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.54 E-value=1.5 Score=46.97 Aligned_cols=181 Identities=14% Similarity=0.119 Sum_probs=98.3
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 004362 42 TYKYMIDKLGFHGNFEEMENLLLEMRMDVDDSLLEGVHIGVMRNYGRRGKVQEAVDVFERMDFYNCEPTVLSYNTIMNIL 121 (759)
Q Consensus 42 ~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 121 (759)
....-+..+.+...+.-|..+.+.-...... ...+...-+.-+.+.|++++|...|-+-...- .|. .++.-|
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~--~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l-e~s-----~Vi~kf 407 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQHLDEDT--LAEIHRKYGDYLYGKGDFDEATDQYIETIGFL-EPS-----EVIKKF 407 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcCCCHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC-ChH-----HHHHHh
Confidence 4455667777777788887665432221111 23444555666677888888887776654211 121 245556
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHhhchhCCCCCCHHhHHHHHHHHHhcCChhHHH
Q 004362 122 VEYGYFSQVHKVYMRMRNKGIVPDVYTFVIRIKSFCRTRRPHVALRLLKNMPSQGFEPNAVAYCTLIAGFYEENHNVEAY 201 (759)
Q Consensus 122 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 201 (759)
.......+....++.+.+.|+. +..--+.|+.+|.+.++.+.-.+..+... .|.. ..-....+..+.+.+-.++|.
T Consensus 408 Ldaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~ 483 (933)
T KOG2114|consen 408 LDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAE 483 (933)
T ss_pred cCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHH
Confidence 6666677777777777777743 33344567778888888877777776655 2211 011223334444444444444
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 004362 202 ELFDEMLGMGISPDIATFNKLIHTLCKKGNVRESEKLFNKV 242 (759)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 242 (759)
-+-..... +...... .+-..|++++|.+.+..+
T Consensus 484 ~LA~k~~~-----he~vl~i---lle~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 484 LLATKFKK-----HEWVLDI---LLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHhcc-----CHHHHHH---HHHHhcCHHHHHHHHhcC
Confidence 33333221 2222222 233446677776666543
No 244
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.50 E-value=0.49 Score=43.95 Aligned_cols=122 Identities=12% Similarity=0.065 Sum_probs=66.0
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhH
Q 004362 506 LCKAAKSEDVMETFKTMIEKRCVPNIITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGA 585 (759)
Q Consensus 506 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 585 (759)
....|+..+|...|+...... +-+......++.+|...|+.+.|..++..+...--.........-+..+.+.....+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 345666666666666666552 2234455566666667777777777666654321111111122233444444444444
Q ss_pred HHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004362 586 YQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEK 631 (759)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 631 (759)
..+-++... .|+|...-..++..+...|+.++|.+.+=.++++
T Consensus 223 ~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 223 QDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred HHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 444443332 4666666666666666666666666666555544
No 245
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.49 E-value=0.15 Score=53.02 Aligned_cols=84 Identities=20% Similarity=0.173 Sum_probs=39.4
Q ss_pred ChHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCC---CCCHHHHHHHHHHHHHcCChhHHH
Q 004362 55 NFEEMENLLLEMRMDVDDSLLEGVHIGVMRNYGRRGKVQEAVDVFERMDFYNC---EPTVLSYNTIMNILVEYGYFSQVH 131 (759)
Q Consensus 55 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~ 131 (759)
..+.|.++++.+....|. ..-....-++.+...|+.++|++.|++...... +.....+-.++-++.-.++|++|.
T Consensus 248 ~~~~a~~lL~~~~~~yP~--s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRYPN--SALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 445555555555555554 333333445555555555555555554331100 011122223344444455555555
Q ss_pred HHHHHHHHC
Q 004362 132 KVYMRMRNK 140 (759)
Q Consensus 132 ~~~~~~~~~ 140 (759)
..|..+.+.
T Consensus 326 ~~f~~L~~~ 334 (468)
T PF10300_consen 326 EYFLRLLKE 334 (468)
T ss_pred HHHHHHHhc
Confidence 555555553
No 246
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.47 E-value=0.006 Score=38.86 Aligned_cols=38 Identities=18% Similarity=0.259 Sum_probs=18.0
Q ss_pred HHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHH
Q 004362 569 FGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIM 608 (759)
Q Consensus 569 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 608 (759)
+..+..+|...|++++|+++|+++.+. .|+++..+..+
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~--~P~~~~a~~~L 41 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL--DPDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCCHHHHHHh
Confidence 344444455555555555555555444 44444444433
No 247
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.47 E-value=1.5 Score=46.24 Aligned_cols=87 Identities=8% Similarity=0.043 Sum_probs=44.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC--HHHHH-HHHHHHhhCCCCCCcchHHHHHHHHHh
Q 004362 222 LIHTLCKKGNVRESEKLFNKVLKRGVSPNLFTFNMFIQGLCRKGA--ISEAI-SLLDSLGREDLTPDVVTYNTLMCGLCK 298 (759)
Q Consensus 222 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~ 298 (759)
++.-+...+.+..|.++-..+-..-.. ...++......+.+..+ -+.++ .+-+++... ...-..|..+.+-...
T Consensus 443 vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~--~~~~iSy~~iA~~Ay~ 519 (829)
T KOG2280|consen 443 VIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK--LTPGISYAAIARRAYQ 519 (829)
T ss_pred hhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhccc--CCCceeHHHHHHHHHh
Confidence 345555566777777776655322111 13455555666655432 12222 222333211 1334456666666667
Q ss_pred CCChHHHHHHHHH
Q 004362 299 NSKVVEAEYYLHK 311 (759)
Q Consensus 299 ~~~~~~a~~~~~~ 311 (759)
.|+.+-|..+++.
T Consensus 520 ~GR~~LA~kLle~ 532 (829)
T KOG2280|consen 520 EGRFELARKLLEL 532 (829)
T ss_pred cCcHHHHHHHHhc
Confidence 7777777776654
No 248
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.39 E-value=0.19 Score=51.35 Aligned_cols=52 Identities=15% Similarity=0.163 Sum_probs=30.5
Q ss_pred HHHHHHhcCC--HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 004362 397 LIKGLSQQGL--ILQALQLMNEMSESGCCPDMWTYNIVINGLCKMGCVSDANNLVND 451 (759)
Q Consensus 397 l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 451 (759)
.-.+|.+..+ +-+.+.-++++.+.|-.|+... +...|+-.|.+.+|.++|.+
T Consensus 604 ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 604 ARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 3345554433 3344455667777776677643 34456667777777777754
No 249
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.36 E-value=0.38 Score=40.42 Aligned_cols=124 Identities=10% Similarity=0.030 Sum_probs=49.9
Q ss_pred HhCCChHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHH---HHHHHHcCCh
Q 004362 51 GFHGNFEEMENLLLEMRMDVDDSLLEGVHIGVMRNYGRRGKVQEAVDVFERMDFYNCEPTVLSYNTI---MNILVEYGYF 127 (759)
Q Consensus 51 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~ 127 (759)
++.|+.++|..-|..+-+.+-.+-..-.....+......|+-..|+..|+.+-....-|.+.--..- .-++..+|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 3444455555555444444422001112222333444455555555555544422222222111111 1123345555
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHhhchh
Q 004362 128 SQVHKVYMRMRNKGIVPDVYTFVIRIKSFCRTRRPHVALRLLKNMPS 174 (759)
Q Consensus 128 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 174 (759)
+++....+-+...+-+--...-..|.-+-.+.|++..|.++|.++..
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 55544444444333222233334444444455555555555555444
No 250
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.32 E-value=0.25 Score=39.22 Aligned_cols=94 Identities=11% Similarity=0.006 Sum_probs=61.6
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCH---HHHHHHHHHHH
Q 004362 46 MIDKLGFHGNFEEMENLLLEMRMDVDDSLLEGVHIGVMRNYGRRGKVQEAVDVFERMDFYNCEPTV---LSYNTIMNILV 122 (759)
Q Consensus 46 l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~ 122 (759)
-+-+++..|++++|++.|..++..-|. ...+|+.-+.++.-+|+.++|++=+++..+...+... .+|..-...|.
T Consensus 49 ~~valaE~g~Ld~AlE~F~qal~l~P~--raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 49 KAIALAEAGDLDGALELFGQALCLAPE--RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhccc--chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 344566777788888888777777776 7777777777777777777777777776643222222 22333445566
Q ss_pred HcCChhHHHHHHHHHHHCC
Q 004362 123 EYGYFSQVHKVYMRMRNKG 141 (759)
Q Consensus 123 ~~~~~~~a~~~~~~~~~~~ 141 (759)
..|+.+.|..-|+...+.|
T Consensus 127 l~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HhCchHHHHHhHHHHHHhC
Confidence 6677777777777766654
No 251
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.30 E-value=0.084 Score=49.81 Aligned_cols=230 Identities=10% Similarity=0.011 Sum_probs=119.0
Q ss_pred HHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH----HHHcC-CCCChhcHHHHHHHHHh
Q 004362 471 YCKQLKMEIAIEILNTMWSHG--VTPDVITYNSLLNGLCKAAKSEDVMETFKT----MIEKR-CVPNIITYSILGESLCK 543 (759)
Q Consensus 471 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~----~~~~~-~~~~~~~~~~l~~~~~~ 543 (759)
+....+.++|+..+.+...+- ...-..++..+..+.+..|.+++++..--. ..+.. ...-...|..+..++.+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777776665431 111223455556666666666665543222 11110 00012234445555555
Q ss_pred cCCHHHHHHHHHHHHHC-CCCc---cHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCc----hhhHHHHHHHHHhc
Q 004362 544 AHKITEAFNLLEEMENK-GLTL---DTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHT----TATYNIMINAFSEK 615 (759)
Q Consensus 544 ~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~ 615 (759)
..++.+++.+-+.-... |..+ .......+..+..-.+.++++++.|+.+.......+| ..++..++..|...
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 55555555555444432 2222 1122334555666666777777777776654322222 34566677777777
Q ss_pred CCHHHHHHHHHHHHHc--CCC-CC-HhhH-----HHHHHHHHhcCChHHHHHHHHHHHh----CCCCCC-HHHHHHHHHH
Q 004362 616 LNFYMAEKLFYEMSEK--GCP-PD-NYTY-----RIMIDSFCKTGGINSGYCLLLENID----KGFIPS-LSTIGRVINC 681 (759)
Q Consensus 616 g~~~~A~~~~~~~~~~--~~~-p~-~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~----~g~~p~-~~~~~~l~~~ 681 (759)
.++++|.-+..++.+. .+. .| ...| ..+.-++...|..-+|.++.+++.+ .|-.|- ...+..+.+.
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 7777777777766543 222 12 1122 2334466667777777777776654 232221 1222344455
Q ss_pred HHhcCcHHHHHHHHHHHHH
Q 004362 682 LCVDHRVHEAVGFVHLMVQ 700 (759)
Q Consensus 682 ~~~~g~~~~A~~~~~~~~~ 700 (759)
|...|+.+.|+.-|+.+..
T Consensus 256 yR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHhcccHhHHHHHHHHHHH
Confidence 5566777777777776654
No 252
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.30 E-value=1.1 Score=43.02 Aligned_cols=124 Identities=13% Similarity=0.020 Sum_probs=72.0
Q ss_pred cCCChHHHHHHHHHhhhcC-CCCCCH-----HHHHHHHHHHHhCC-ChHHHHHHHHHHHhc----C------CC--CccH
Q 004362 16 HQKNPLTALEMFNSVKRED-GFKHTL-----LTYKYMIDKLGFHG-NFEEMENLLLEMRMD----V------DD--SLLE 76 (759)
Q Consensus 16 ~~~~~~~A~~~~~~~~~~~-~~~~~~-----~~~~~l~~~l~~~~-~~~~A~~~~~~~~~~----~------~~--~~~~ 76 (759)
++|+.+.|.-+|.++.... ...|+. ..+..++..+...+ ++++|..+++++... . +. ....
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~ 84 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRL 84 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHH
Confidence 6889999999999876543 222222 13344555556677 888888888776554 1 11 0112
Q ss_pred HHHHHHHHHHHhcCChhHHHHH---HHHhhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 004362 77 GVHIGVMRNYGRRGKVQEAVDV---FERMDFYNCEPTVLSYNTIMNILVEYGYFSQVHKVYMRMRNK 140 (759)
Q Consensus 77 ~~~~~l~~~~~~~g~~~~A~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 140 (759)
.++..++.+|...+..+...++ ++.+.... +..+..+..-+.++.+.++.+.+.+.+.+|+..
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 2445566677766665544443 33333222 222344445566666677777777777777765
No 253
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.28 E-value=0.01 Score=37.77 Aligned_cols=40 Identities=15% Similarity=0.015 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCccHHHHHHHH
Q 004362 42 TYKYMIDKLGFHGNFEEMENLLLEMRMDVDDSLLEGVHIGVM 83 (759)
Q Consensus 42 ~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 83 (759)
.+..++..|...|++++|++.|+++.+..|. +..++..++
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~--~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPD--DPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC--CHHHHHHhh
Confidence 4556667777777777777777777777766 666655544
No 254
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.20 E-value=0.18 Score=41.36 Aligned_cols=52 Identities=10% Similarity=0.201 Sum_probs=21.4
Q ss_pred ccCChhhHHHHHHHHHHccCCCC-chhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004362 578 NSGDLDGAYQLFRRMEDQYKISH-TTATYNIMINAFSEKLNFYMAEKLFYEMS 629 (759)
Q Consensus 578 ~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 629 (759)
+.|++++|++.|+.+...+..++ ...+...++.+|...+++++|+..+++.+
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFi 74 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFI 74 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 34445555555544444421111 12223334444444444444444444444
No 255
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.16 E-value=1 Score=41.17 Aligned_cols=56 Identities=13% Similarity=0.144 Sum_probs=35.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 004362 643 MIDSFCKTGGINSGYCLLLENIDKGFIPS----LSTIGRVINCLCVDHRVHEAVGFVHLMVQ 700 (759)
Q Consensus 643 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 700 (759)
++.-|.+.|.+..|...++++++. -|+ .+.+..+..++...|-.++|.+.-+-+..
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~--y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN--YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc--cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 445677777777777777777763 222 23334555666677777777776655544
No 256
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.12 E-value=0.24 Score=46.88 Aligned_cols=128 Identities=12% Similarity=0.045 Sum_probs=59.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC-----CCccHHHHHHHHHHHHccCChhhHHHHHHHHHHcc---CCCC-----chh
Q 004362 537 LGESLCKAHKITEAFNLLEEMENKG-----LTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQY---KISH-----TTA 603 (759)
Q Consensus 537 l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~-----~~~ 603 (759)
+..+....+.++++.+.|+.+.+.- .-....++..+...|.+..|+++|.-+..++.+.- ...+ ...
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 4444444555555555555554320 01122344555555555566665555544443321 0011 012
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 004362 604 TYNIMINAFSEKLNFYMAEKLFYEMSEK----GCPPD-NYTYRIMIDSFCKTGGINSGYCLLLENI 664 (759)
Q Consensus 604 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 664 (759)
+...|+.++...|++..|.+.-++..+. |-.+- ......++++|...|+.+.|..-|+.+.
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 2233445555555555555555543322 21121 3344555566666666666666555543
No 257
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.12 E-value=0.27 Score=46.06 Aligned_cols=152 Identities=12% Similarity=0.068 Sum_probs=77.6
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHH----HHHHHhcCCHH
Q 004362 473 KQLKMEIAIEILNTMWSHGVTPDVITYNSLLNGLCKAAKSEDVMETFKTMIEKRCVPNIITYSIL----GESLCKAHKIT 548 (759)
Q Consensus 473 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~ 548 (759)
..|+..+|-..++++++. .+.|...+...-.+|.-.|+.+.-...+++++.. -.|+...|..+ .-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 345555555556665554 3345555555555666666666655555555543 12333333222 22334556666
Q ss_pred HHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCc--hhhHHHHHHHHHhcCCHHHHHHHHH
Q 004362 549 EAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHT--TATYNIMINAFSEKLNFYMAEKLFY 626 (759)
Q Consensus 549 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~ 626 (759)
+|.+.-++..+.+ +.|.-...+....+...|+..++.++...-........- .+.|-..+-.+...+.++.|+++|.
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 6666666665542 334555555556666666666666666555443221111 1222233334445566666666665
Q ss_pred H
Q 004362 627 E 627 (759)
Q Consensus 627 ~ 627 (759)
+
T Consensus 272 ~ 272 (491)
T KOG2610|consen 272 R 272 (491)
T ss_pred H
Confidence 4
No 258
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.09 E-value=0.42 Score=44.85 Aligned_cols=146 Identities=10% Similarity=-0.030 Sum_probs=100.6
Q ss_pred HccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHH----HHHHHHhcCC
Q 004362 577 CNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRI----MIDSFCKTGG 652 (759)
Q Consensus 577 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~----l~~~~~~~g~ 652 (759)
.-.|+..+|-..++++.+. .|.|..++.---.++...|+...-...++++... ..||..+|.. +.-++...|-
T Consensus 114 ~~~g~~h~a~~~wdklL~d--~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD--YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hccccccHHHHHHHHHHHh--CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhcc
Confidence 3468888888888888888 7888888887778888888888888888887743 3556544332 3335567899
Q ss_pred hHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCc-------hHHHHHhc-cccccccch
Q 004362 653 INSGYCLLLENIDKGFIPSL-STIGRVINCLCVDHRVHEAVGFVHLMVQKGIVPE-------VVNTIFEA-DKREVASPK 723 (759)
Q Consensus 653 ~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-------~~~~~~~~-~~~~~~~a~ 723 (759)
+++|.+..+++++ ++|.+ .........+...|+..++.++..+-.. .++-. .|..-+.. ..+.++.|.
T Consensus 191 y~dAEk~A~ralq--iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted-~Wr~s~mlasHNyWH~Al~~iE~aeye~al 267 (491)
T KOG2610|consen 191 YDDAEKQADRALQ--INRFDCWASHAKAHVLEMNGRHKEGKEFMYKTED-DWRQSWMLASHNYWHTALFHIEGAEYEKAL 267 (491)
T ss_pred chhHHHHHHhhcc--CCCcchHHHHHHHHHHHhcchhhhHHHHHHhccc-chhhhhHHHhhhhHHHHHhhhcccchhHHH
Confidence 9999999999988 77753 3334555666788999999988766432 12111 11111111 668888898
Q ss_pred HHHHH
Q 004362 724 IVVED 728 (759)
Q Consensus 724 ~~~~~ 728 (759)
.+|.+
T Consensus 268 eIyD~ 272 (491)
T KOG2610|consen 268 EIYDR 272 (491)
T ss_pred HHHHH
Confidence 88876
No 259
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=95.85 E-value=3.5 Score=44.76 Aligned_cols=228 Identities=12% Similarity=0.066 Sum_probs=127.9
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHH-HHHhcCCHHHHHHHHHHHHHc----CCCCChhcHHHHH
Q 004362 471 YCKQLKMEIAIEILNTMWSHGVTPDV-------ITYNSLLN-GLCKAAKSEDVMETFKTMIEK----RCVPNIITYSILG 538 (759)
Q Consensus 471 ~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~ 538 (759)
.....++.+|..+..++...-..|+. ..|+.+-. +....|+++.|.++.+..... ...+....+..++
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 44677888888888877654222221 13443332 234578899999888877764 2234455677778
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCccHHH---HHHH--HHHHHccCC--hhhHHHHHHHHHHcc--CCCCc---hhhHH
Q 004362 539 ESLCKAHKITEAFNLLEEMENKGLTLDTVA---FGTL--INGFCNSGD--LDGAYQLFRRMEDQY--KISHT---TATYN 606 (759)
Q Consensus 539 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l--~~~~~~~g~--~~~A~~~~~~~~~~~--~~~~~---~~~~~ 606 (759)
.+..-.|++++|..+.++..+..-..+... |..+ ...+...|. +.+....|....... ..|-. ..++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 888889999999999888775421222222 2222 334566773 334444444443321 12222 22333
Q ss_pred HHHHHHHhc-CCHHHHHHHHHHHHHcCCCCCHhh--HHHHHHHHHhcCChHHHHHHHHHHHhCCCCC----CHHHHHHHH
Q 004362 607 IMINAFSEK-LNFYMAEKLFYEMSEKGCPPDNYT--YRIMIDSFCKTGGINSGYCLLLENIDKGFIP----SLSTIGRVI 679 (759)
Q Consensus 607 ~l~~~~~~~-g~~~~A~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p----~~~~~~~l~ 679 (759)
.+.+++.+. +...++..-++-.......|-... +..|+.+....|++++|...+.++......+ +.......+
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v 664 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKV 664 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHh
Confidence 344444441 223333333333322221222222 2367788899999999999999987632222 333333444
Q ss_pred HHH--HhcCcHHHHHHHHHHH
Q 004362 680 NCL--CVDHRVHEAVGFVHLM 698 (759)
Q Consensus 680 ~~~--~~~g~~~~A~~~~~~~ 698 (759)
... ...|+..+|..+..+-
T Consensus 665 ~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 665 KLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred hHHHhcccCCHHHHHHHHHhc
Confidence 444 4779999999888773
No 260
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.78 E-value=2 Score=41.35 Aligned_cols=101 Identities=12% Similarity=0.096 Sum_probs=51.6
Q ss_pred cHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHH
Q 004362 533 TYSILGESLCKAHKI---TEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMI 609 (759)
Q Consensus 533 ~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 609 (759)
++..++.+|...+.. ++|..+++.+... .+..+.++..-+..+.+.++.+.+.+.+.+|...... ....+..++
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~--~e~~~~~~l 162 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH--SESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc--ccchHHHHH
Confidence 445556666655543 3455555555443 3333444545556666677777777777777776321 223333333
Q ss_pred HHH---HhcCCHHHHHHHHHHHHHcCCCCCH
Q 004362 610 NAF---SEKLNFYMAEKLFYEMSEKGCPPDN 637 (759)
Q Consensus 610 ~~~---~~~g~~~~A~~~~~~~~~~~~~p~~ 637 (759)
..+ .. .....|...+.+++...+.|..
T Consensus 163 ~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 163 HHIKQLAE-KSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHh-hCcHHHHHHHHHHHHHHhCCCh
Confidence 333 22 2334555555555444344443
No 261
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.75 E-value=0.011 Score=34.91 Aligned_cols=32 Identities=13% Similarity=0.266 Sum_probs=19.8
Q ss_pred HHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHH
Q 004362 589 FRRMEDQYKISHTTATYNIMINAFSEKLNFYMAE 622 (759)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 622 (759)
|+++++. .|.++.+|+.++.+|...|++++|+
T Consensus 2 y~kAie~--~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIEL--NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHH--CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3445555 5666666666666666666666664
No 262
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.73 E-value=0.024 Score=33.60 Aligned_cols=32 Identities=9% Similarity=0.232 Sum_probs=21.7
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 004362 638 YTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPS 671 (759)
Q Consensus 638 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 671 (759)
.+|..++.+|...|++++|+..|+++++ +.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 3566677777777777777777777777 6665
No 263
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.66 E-value=1.1 Score=37.75 Aligned_cols=132 Identities=12% Similarity=0.113 Sum_probs=83.5
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCccHH-HHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchh--hHHHHHHHHHhcCCH
Q 004362 542 CKAHKITEAFNLLEEMENKGLTLDTV-AFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTA--TYNIMINAFSEKLNF 618 (759)
Q Consensus 542 ~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~ 618 (759)
++.+..++|+.-|..+.+.|...=+. ............|+...|+..|+.+-.....|.-.. .-..-+..+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 45666777777777777765432222 223344556677888888888888876644443321 112223456677888
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 004362 619 YMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSLS 673 (759)
Q Consensus 619 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 673 (759)
+......+-+...+-+--...-..|+-+-.+.|++.+|.+.|..+......|.+.
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~aprni 203 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPRNI 203 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcHHH
Confidence 8887777766543322234555677778888899999999998887754556544
No 264
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=95.66 E-value=2.8 Score=42.17 Aligned_cols=91 Identities=7% Similarity=0.013 Sum_probs=47.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHH--ccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHH
Q 004362 536 ILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFC--NSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFS 613 (759)
Q Consensus 536 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 613 (759)
.+..-+.+.|-..+|..++..+... .|++...+..++..-. .+-++..+..+|+.+...++ .++..|......-.
T Consensus 465 ~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~lw~~y~~~e~ 541 (568)
T KOG2396|consen 465 KYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDLWMDYMKEEL 541 (568)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHHHHHHHHhhc
Confidence 3444445556666666666666554 3455555555554321 11225556666666666544 45555555554444
Q ss_pred hcCCHHHHHHHHHHHH
Q 004362 614 EKLNFYMAEKLFYEMS 629 (759)
Q Consensus 614 ~~g~~~~A~~~~~~~~ 629 (759)
..|..+.+-.+|.++.
T Consensus 542 ~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 542 PLGRPENCGQIYWRAM 557 (568)
T ss_pred cCCCcccccHHHHHHH
Confidence 5555555555554444
No 265
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.62 E-value=1.6 Score=39.06 Aligned_cols=183 Identities=11% Similarity=0.059 Sum_probs=96.4
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCccHHH-HHHHHHHHHccC
Q 004362 506 LCKAAKSEDVMETFKTMIEKRCVPNIITYSILGESLCKAHKITEAFNLLEEME----NKGLTLDTVA-FGTLINGFCNSG 580 (759)
Q Consensus 506 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~-~~~l~~~~~~~g 580 (759)
+.-.+++++|.++|.+... .|--..+|+.|-..|-++- +.|-+.|..+ |.....+ .+.+
T Consensus 24 fgg~~k~eeAadl~~~Aan---------------~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~c-ykk~ 87 (288)
T KOG1586|consen 24 FGGSNKYEEAAELYERAAN---------------MYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANC-YKKV 87 (288)
T ss_pred cCCCcchHHHHHHHHHHHH---------------HHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHH-hhcc
Confidence 3445688888888876543 2222333333333333322 2233334333 3333333 4556
Q ss_pred ChhhHHHHHHHHHHccCC----CCchhhHHHHHHHHHhc-CCHHHHHHHHHHHHHc--CCCCC---HhhHHHHHHHHHhc
Q 004362 581 DLDGAYQLFRRMEDQYKI----SHTTATYNIMINAFSEK-LNFYMAEKLFYEMSEK--GCPPD---NYTYRIMIDSFCKT 650 (759)
Q Consensus 581 ~~~~A~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~--~~~p~---~~~~~~l~~~~~~~ 650 (759)
++++|.+.++..++.+.. ..-...+..++..|-.. .+++.|+..|++.-+- |-+.+ ..++.-+...-...
T Consensus 88 ~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~l 167 (288)
T KOG1586|consen 88 DPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQL 167 (288)
T ss_pred ChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHH
Confidence 888888888777654211 11122334566666654 7888899999887643 11111 22333334444567
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHH----HHHHHHHHh--cCcHHHHHHHHHHHHHCCCCCc
Q 004362 651 GGINSGYCLLLENIDKGFIPSLSTI----GRVINCLCV--DHRVHEAVGFVHLMVQKGIVPE 706 (759)
Q Consensus 651 g~~~~A~~~~~~~~~~g~~p~~~~~----~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~p~ 706 (759)
+++.+|+.+|++.....+.-+-..| +.+-..+|. .++.-.+...+++-.+ +.|.
T Consensus 168 eqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~--~dP~ 227 (288)
T KOG1586|consen 168 EQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQE--LDPA 227 (288)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHh--cCCc
Confidence 8899999999988874333322222 112222332 2555556666666655 5665
No 266
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.60 E-value=0.93 Score=39.30 Aligned_cols=86 Identities=13% Similarity=-0.026 Sum_probs=37.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCH----hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHH
Q 004362 610 NAFSEKLNFYMAEKLFYEMSEKGCPPDN----YTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSLST--IGRVINCLC 683 (759)
Q Consensus 610 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~--~~~l~~~~~ 683 (759)
..+...|++++|...++..+.. +.|. .+-..|.......|.+++|+..+..... ++... ...-.+.+.
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~--t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~----~~w~~~~~elrGDill 170 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQ--TKDENLKALAALRLARVQLQQKKADAALKTLDTIKE----ESWAAIVAELRGDILL 170 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHcc--chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc----ccHHHHHHHHhhhHHH
Confidence 4444555555555555554422 2221 1112233344455555555555544333 21111 222334445
Q ss_pred hcCcHHHHHHHHHHHHHC
Q 004362 684 VDHRVHEAVGFVHLMVQK 701 (759)
Q Consensus 684 ~~g~~~~A~~~~~~~~~~ 701 (759)
..|+.++|..-|++.+++
T Consensus 171 ~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 171 AKGDKQEARAAYEKALES 188 (207)
T ss_pred HcCchHHHHHHHHHHHHc
Confidence 555555555555555553
No 267
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.58 E-value=1 Score=37.99 Aligned_cols=87 Identities=15% Similarity=-0.027 Sum_probs=59.8
Q ss_pred HHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChH
Q 004362 575 GFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGIN 654 (759)
Q Consensus 575 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 654 (759)
.-.+.++.+++..++..+... .|..+..-..-++.+...|+|.+|+.+++++.+. .|....-..|+..|.....-.
T Consensus 19 ~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~--~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER--APGFPYAKALLALCLYALGDP 94 (160)
T ss_pred HHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHHcCCh
Confidence 345677888888888888877 6777777777778888888888888888888755 455444455555555444444
Q ss_pred HHHHHHHHHHh
Q 004362 655 SGYCLLLENID 665 (759)
Q Consensus 655 ~A~~~~~~~~~ 665 (759)
.-..+..++++
T Consensus 95 ~Wr~~A~evle 105 (160)
T PF09613_consen 95 SWRRYADEVLE 105 (160)
T ss_pred HHHHHHHHHHh
Confidence 55555566666
No 268
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.51 E-value=0.5 Score=40.80 Aligned_cols=102 Identities=14% Similarity=0.093 Sum_probs=65.3
Q ss_pred HHHccCChhhHHHHHHHHHHccCCCCc-----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHH
Q 004362 575 GFCNSGDLDGAYQLFRRMEDQYKISHT-----TATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPD-NYTYRIMIDSFC 648 (759)
Q Consensus 575 ~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 648 (759)
-+.+.|++++|..-|..+++. .|+. ...|..-+.++.+.+.++.|+.-..++++. .|. ...+..-..+|.
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel--~pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL--NPTYEKALERRAEAYE 179 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc--CchhHHHHHHHHHHHH
Confidence 345667777777777777776 3432 345555666777777777777777777754 343 333334445677
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004362 649 KTGGINSGYCLLLENIDKGFIPSLSTIGRVINCL 682 (759)
Q Consensus 649 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 682 (759)
+...+++|+.=|+++++ ..|.......-+..+
T Consensus 180 k~ek~eealeDyKki~E--~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILE--SDPSRREAREAIARL 211 (271)
T ss_pred hhhhHHHHHHHHHHHHH--hCcchHHHHHHHHhc
Confidence 77778888888888887 677665554444333
No 269
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=95.50 E-value=3.2 Score=41.79 Aligned_cols=96 Identities=9% Similarity=0.049 Sum_probs=69.6
Q ss_pred CCCHhhH-HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH-HHHHHHH--HhcCcHHHHHHHHHHHHH-CCCCCchH
Q 004362 634 PPDNYTY-RIMIDSFCKTGGINSGYCLLLENIDKGFIPSLSTI-GRVINCL--CVDHRVHEAVGFVHLMVQ-KGIVPEVV 708 (759)
Q Consensus 634 ~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~-~~l~~~~--~~~g~~~~A~~~~~~~~~-~~~~p~~~ 708 (759)
.|+..++ +.++..+...|-+.+|...+.+... ++|-+..+ ..++..= ...-+...+.++|+.|.. -|-+|+.|
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~--lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw 533 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQE--LPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLW 533 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHh--CCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHH
Confidence 5665555 5577778888999999999999988 76644433 3333322 222338888999999875 67788888
Q ss_pred HHHHhc--cccccccchHHHHHHHh
Q 004362 709 NTIFEA--DKREVASPKIVVEDLLK 731 (759)
Q Consensus 709 ~~~~~~--~~~~~~~a~~~~~~~~~ 731 (759)
...+.. .+|.-+.+-.++.++++
T Consensus 534 ~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 534 MDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHhhccCCCcccccHHHHHHHH
Confidence 887766 88888888888888766
No 270
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.45 E-value=4.7 Score=43.41 Aligned_cols=182 Identities=11% Similarity=0.115 Sum_probs=92.6
Q ss_pred CCHHHHHHHHh---cCCChHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCccHHHHHH
Q 004362 5 VLPKHVAAVVK---HQKNPLTALEMFNSVKREDGFKHTLLTYKYMIDKLGFHGNFEEMENLLLEMRMDVDDSLLEGVHIG 81 (759)
Q Consensus 5 l~~~~~~~~l~---~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 81 (759)
|++..+...+. ...-++.|+.+-+.- ..++ ..-.......+..|.+.|++++|...|-+.+.--.+ ..
T Consensus 332 L~ek~le~kL~iL~kK~ly~~Ai~LAk~~-~~d~-d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~-------s~ 402 (933)
T KOG2114|consen 332 LIEKDLETKLDILFKKNLYKVAINLAKSQ-HLDE-DTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP-------SE 402 (933)
T ss_pred eeeccHHHHHHHHHHhhhHHHHHHHHHhc-CCCH-HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh-------HH
Confidence 34444444443 344567777665541 1100 001123344555666788888888887666543311 12
Q ss_pred HHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 004362 82 VMRNYGRRGKVQEAVDVFERMDFYNCEPTVLSYNTIMNILVEYGYFSQVHKVYMRMRNKGIVPDVYTFVIRIKSFCRTRR 161 (759)
Q Consensus 82 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 161 (759)
++.-|...........+++.+.+.| -.+...-..|+.+|.+.++.+.-.+..+... .|.. .+-....+..+.+.+-
T Consensus 403 Vi~kfLdaq~IknLt~YLe~L~~~g-la~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~sny 478 (933)
T KOG2114|consen 403 VIKKFLDAQRIKNLTSYLEALHKKG-LANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNY 478 (933)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHcc-cccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhCh
Confidence 4555566666666667777776665 3455556667777887777666555444433 2211 1112333444445555
Q ss_pred hhhHHHHHhhchhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 004362 162 PHVALRLLKNMPSQGFEPNAVAYCTLIAGFYEENHNVEAYELFDEM 207 (759)
Q Consensus 162 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 207 (759)
.++|..+-..... +......++. ..+++++|++.+..+
T Consensus 479 l~~a~~LA~k~~~-----he~vl~ille---~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 479 LDEAELLATKFKK-----HEWVLDILLE---DLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHHHHhcc-----CHHHHHHHHH---HhcCHHHHHHHHhcC
Confidence 5555544433221 2333333332 345666666655544
No 271
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=95.40 E-value=0.089 Score=49.18 Aligned_cols=105 Identities=10% Similarity=0.002 Sum_probs=74.5
Q ss_pred HHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC
Q 004362 573 INGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGG 652 (759)
Q Consensus 573 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 652 (759)
..-|.+.|.+++|+..|.+.... .|.++..+.+.+.+|.+.+++..|..-...++..+ ..-...|..-+.+-...|+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhh
Confidence 35677889999999999888887 77788888888889998888888877777666331 1113345555555556677
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004362 653 INSGYCLLLENIDKGFIPSLSTIGRVINCL 682 (759)
Q Consensus 653 ~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 682 (759)
..+|.+=++..++ +.|+...+......+
T Consensus 181 ~~EAKkD~E~vL~--LEP~~~ELkK~~a~i 208 (536)
T KOG4648|consen 181 NMEAKKDCETVLA--LEPKNIELKKSLARI 208 (536)
T ss_pred HHHHHHhHHHHHh--hCcccHHHHHHHHHh
Confidence 8888888888888 888765554444333
No 272
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.33 E-value=1.2 Score=35.77 Aligned_cols=64 Identities=22% Similarity=0.201 Sum_probs=35.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 004362 499 YNSLLNGLCKAAKSEDVMETFKTMIEKRCVPNIITYSILGESLCKAHKITEAFNLLEEMENKGLT 563 (759)
Q Consensus 499 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 563 (759)
....+......|+-++--++++.+.+. -.+++..+..++.+|.+.|+..++.+++.++-+.|.+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 344445555666666666666666543 2556666666677777777777777776666666543
No 273
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.29 E-value=0.028 Score=33.21 Aligned_cols=31 Identities=6% Similarity=0.257 Sum_probs=18.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 004362 639 TYRIMIDSFCKTGGINSGYCLLLENIDKGFIPS 671 (759)
Q Consensus 639 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 671 (759)
.|..++.++...|++++|+..++++++ +.|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~--l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE--LDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH--HCcC
Confidence 455566666666666666666666666 5554
No 274
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=95.26 E-value=0.78 Score=40.37 Aligned_cols=74 Identities=14% Similarity=0.120 Sum_probs=49.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004362 607 IMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSLSTIGRVINCLC 683 (759)
Q Consensus 607 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~ 683 (759)
..+..+.+.+.+.+++.+.++-++.. |.|..+-..++..++-.|+|++|...++-... +.|+...-..+...+.
T Consensus 6 ~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~--l~p~~t~~a~lyr~li 79 (273)
T COG4455 6 DTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT--LSPQDTVGASLYRHLI 79 (273)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhh--cCcccchHHHHHHHHH
Confidence 34556667777777877777666542 44566777777888888888888888887777 6676554444444443
No 275
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.20 E-value=0.27 Score=40.07 Aligned_cols=48 Identities=17% Similarity=0.284 Sum_probs=33.0
Q ss_pred CCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHH
Q 004362 562 LTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMI 609 (759)
Q Consensus 562 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 609 (759)
..|+..++.+++.+|+..|++..|.++.+...+.++.|-+...|..|.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll 95 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLL 95 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 456777777777777777777777777777777766555555555554
No 276
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.19 E-value=3.1 Score=41.95 Aligned_cols=108 Identities=19% Similarity=0.129 Sum_probs=74.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-C-HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004362 603 ATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPP-D-NYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSLSTIGRVIN 680 (759)
Q Consensus 603 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 680 (759)
.+-..++.+..+.|+.+||+++++++.+.. ++ | ..+...|+.++...+.+.++..++.+--+. ..|+..++..-..
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~-p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi-~lpkSAti~YTaA 337 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEF-PNLDNLNIRENLIEALLELQAYADVQALLAKYDDI-SLPKSATICYTAA 337 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhC-CccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc-cCCchHHHHHHHH
Confidence 334567888889999999999999998653 33 2 557888999999999999999999996542 2355555432222
Q ss_pred HH-Hh-cCc---------------HHHHHHHHHHHHHCCCCCchHHHHHhc
Q 004362 681 CL-CV-DHR---------------VHEAVGFVHLMVQKGIVPEVVNTIFEA 714 (759)
Q Consensus 681 ~~-~~-~g~---------------~~~A~~~~~~~~~~~~~p~~~~~~~~~ 714 (759)
.+ .+ -|+ -..|.+.+.++.+ .+|.+-..+++.
T Consensus 338 LLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAve--fNPHVp~YLLe~ 386 (539)
T PF04184_consen 338 LLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVE--FNPHVPKYLLEM 386 (539)
T ss_pred HHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHH--hCCCCchhhhcc
Confidence 22 11 222 1346778888887 677766666665
No 277
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.04 E-value=7.8 Score=43.67 Aligned_cols=16 Identities=19% Similarity=-0.020 Sum_probs=7.3
Q ss_pred HHHHhCCChHHHHHHH
Q 004362 294 CGLCKNSKVVEAEYYL 309 (759)
Q Consensus 294 ~~~~~~~~~~~a~~~~ 309 (759)
.-++..+++.+|.++.
T Consensus 685 r~~l~~~~y~~AF~~~ 700 (1265)
T KOG1920|consen 685 RTLLDRLRYKEAFEVM 700 (1265)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344445555554433
No 278
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.96 E-value=6.1 Score=42.00 Aligned_cols=104 Identities=12% Similarity=0.133 Sum_probs=54.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCC
Q 004362 502 LLNGLCKAAKSEDVMETFKTMIEKRCVPNIITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGD 581 (759)
Q Consensus 502 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 581 (759)
-+.-+...|+..+|.++-.+.. -||...|..-+.+++..++|++-.++-+... ++.-|..++.+|.+.|+
T Consensus 690 Tv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n 759 (829)
T KOG2280|consen 690 TVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGN 759 (829)
T ss_pred HHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhccc
Confidence 3344445566666555544432 3455566666666666666665555443322 13334555566666666
Q ss_pred hhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHH
Q 004362 582 LDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLF 625 (759)
Q Consensus 582 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 625 (759)
.++|.+++-+.... .....+|.+.|++.+|.++.
T Consensus 760 ~~EA~KYiprv~~l----------~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 760 KDEAKKYIPRVGGL----------QEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HHHHhhhhhccCCh----------HHHHHHHHHhccHHHHHHHH
Confidence 66666665443221 13445555555555555443
No 279
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.89 E-value=0.41 Score=41.32 Aligned_cols=93 Identities=16% Similarity=0.140 Sum_probs=72.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCH-----hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH-HHHHHH
Q 004362 609 INAFSEKLNFYMAEKLFYEMSEKGCPPDN-----YTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSLSTIG-RVINCL 682 (759)
Q Consensus 609 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~-~l~~~~ 682 (759)
++-+...|++++|..-|.++++. +++.. ..|..-+.++.+.+.++.|+.-..++++ +.|...... .-..+|
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie--l~pty~kAl~RRAeay 178 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE--LNPTYEKALERRAEAY 178 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh--cCchhHHHHHHHHHHH
Confidence 45567899999999999999976 34432 3455556688899999999999999999 888755443 335566
Q ss_pred HhcCcHHHHHHHHHHHHHCCCCCc
Q 004362 683 CVDHRVHEAVGFVHLMVQKGIVPE 706 (759)
Q Consensus 683 ~~~g~~~~A~~~~~~~~~~~~~p~ 706 (759)
.+...+++|++-|+++++ ..|.
T Consensus 179 ek~ek~eealeDyKki~E--~dPs 200 (271)
T KOG4234|consen 179 EKMEKYEEALEDYKKILE--SDPS 200 (271)
T ss_pred HhhhhHHHHHHHHHHHHH--hCcc
Confidence 678999999999999998 5665
No 280
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.85 E-value=2.1 Score=36.15 Aligned_cols=86 Identities=12% Similarity=0.054 Sum_probs=52.1
Q ss_pred hCCChHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCChhHHH
Q 004362 52 FHGNFEEMENLLLEMRMDVDDSLLEGVHIGVMRNYGRRGKVQEAVDVFERMDFYNCEPTVLSYNTIMNILVEYGYFSQVH 131 (759)
Q Consensus 52 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 131 (759)
..++.+++..++..+....|. ..++-..-+..+.+.|++.+|+.+|+.+.... |.......|+..|.....-..=.
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~--~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~~D~~Wr 97 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPE--FPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYALGDPSWR 97 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCC--chHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHcCChHHH
Confidence 566777888888777777777 55665666667777888888888887776442 33333444555444443333333
Q ss_pred HHHHHHHHCC
Q 004362 132 KVYMRMRNKG 141 (759)
Q Consensus 132 ~~~~~~~~~~ 141 (759)
..-+++.+.+
T Consensus 98 ~~A~evle~~ 107 (160)
T PF09613_consen 98 RYADEVLESG 107 (160)
T ss_pred HHHHHHHhcC
Confidence 3344455544
No 281
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.73 E-value=2.2 Score=35.88 Aligned_cols=124 Identities=9% Similarity=0.148 Sum_probs=66.9
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHc
Q 004362 45 YMIDKLGFHGNFEEMENLLLEMRMDVDDSLLEGVHIGVMRNYGRRGKVQEAVDVFERMDFYNCEPTVLSYNTIMNILVEY 124 (759)
Q Consensus 45 ~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (759)
.++..+...+....+...++.+...++. +...++.++..|++.. ..+..+.+.. ..+......+++.|.+.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~~--~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNSE--NPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCcc--chhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 4555555566667777777766666543 5566666777776542 3344444442 01222233466667777
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-CChhhHHHHHhhchhCCCCCCHHhHHHHHHHHH
Q 004362 125 GYFSQVHKVYMRMRNKGIVPDVYTFVIRIKSFCRT-RRPHVALRLLKNMPSQGFEPNAVAYCTLIAGFY 192 (759)
Q Consensus 125 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 192 (759)
+.++++.-++.++.. +...+..+... ++++.|.+.+.+. .+...|..++..+.
T Consensus 83 ~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 83 KLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred CcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 777777666666532 11122223333 6666666666542 24556666665554
No 282
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.73 E-value=4.5 Score=43.39 Aligned_cols=245 Identities=13% Similarity=0.059 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-----HhcCCHHHHHHHHHHHHH-------cCCCCChhcHHHHHHHHHhc
Q 004362 477 MEIAIEILNTMWSHGVTPDVITYNSLLNGL-----CKAAKSEDVMETFKTMIE-------KRCVPNIITYSILGESLCKA 544 (759)
Q Consensus 477 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 544 (759)
...|...++...+.| +...-..+..+| ....+.+.|+.+|+.+.+ .+ .......++.+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 456777777777765 333333333333 244577888888888766 33 344566677777653
Q ss_pred C-----CHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHcc---CChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHh--
Q 004362 545 H-----KITEAFNLLEEMENKGLTLDTVAFGTLINGFCNS---GDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSE-- 614 (759)
Q Consensus 545 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 614 (759)
. +.+.|..++...-+.|. |+... .+..++... .+...|.++|..+...+ ...++..++.+|..
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~-~~a~~--~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G----~~~A~~~la~~y~~G~ 374 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGN-PDAQY--LLGVLYETGTKERDYRRAFEYYSLAAKAG----HILAIYRLALCYELGL 374 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCC-chHHH--HHHHHHHcCCccccHHHHHHHHHHHHHcC----ChHHHHHHHHHHHhCC
Confidence 3 55667777777777653 23333 223333222 34667788877777653 33444455544443
Q ss_pred --cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH---H-Hh---c
Q 004362 615 --KLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSLSTIGRVINC---L-CV---D 685 (759)
Q Consensus 615 --~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~---~-~~---~ 685 (759)
..+...|..+++++.++| .|...--...+..+.. +.++.+.-.+..+.+.|..-.......+... . .. .
T Consensus 375 gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~ 452 (552)
T KOG1550|consen 375 GVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVI 452 (552)
T ss_pred CcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccc
Confidence 246777788888777776 3332222222223333 6666666666666654332111111111111 1 11 2
Q ss_pred CcHHHHHHHHHHHHHCCCCCchHHHHHhc--c-----ccccccchHHHHHHHhcCCCchHHH
Q 004362 686 HRVHEAVGFVHLMVQKGIVPEVVNTIFEA--D-----KREVASPKIVVEDLLKKSHITYYAY 740 (759)
Q Consensus 686 g~~~~A~~~~~~~~~~~~~p~~~~~~~~~--~-----~~~~~~a~~~~~~~~~~~~~~~~~~ 740 (759)
.+.+.+...+.+...+| .......+.. . ..+++.|...|.+....+ ....|
T Consensus 453 ~~~~~~~~~~~~a~~~g--~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~--~~~~~ 510 (552)
T KOG1550|consen 453 STLERAFSLYSRAAAQG--NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG--AQALF 510 (552)
T ss_pred cchhHHHHHHHHHHhcc--CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh--hHHHh
Confidence 25555666666654321 1122223333 1 224566777777776666 44444
No 283
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.69 E-value=6.3 Score=44.35 Aligned_cols=17 Identities=0% Similarity=0.079 Sum_probs=10.4
Q ss_pred HhcCCHHHHHHHHHHHH
Q 004362 507 CKAAKSEDVMETFKTMI 523 (759)
Q Consensus 507 ~~~~~~~~a~~~~~~~~ 523 (759)
..+.++.+-+.+++++.
T Consensus 862 ~SqkDPkEyLP~L~el~ 878 (1265)
T KOG1920|consen 862 KSQKDPKEYLPFLNELK 878 (1265)
T ss_pred HhccChHHHHHHHHHHh
Confidence 34556666666666665
No 284
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.69 E-value=0.047 Score=32.23 Aligned_cols=32 Identities=13% Similarity=0.017 Sum_probs=23.5
Q ss_pred HHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHH
Q 004362 63 LLEMRMDVDDSLLEGVHIGVMRNYGRRGKVQEAV 96 (759)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 96 (759)
|+++++.+|. +..+++.++..|...|++++|+
T Consensus 2 y~kAie~~P~--n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPN--NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCC--CHHHHHHHHHHHHHCcCHHhhc
Confidence 5666777777 7777777777777777777765
No 285
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.57 E-value=0.84 Score=46.74 Aligned_cols=129 Identities=16% Similarity=0.104 Sum_probs=58.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHc
Q 004362 499 YNSLLNGLCKAAKSEDVMETFKTMIEKRCVPNIITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCN 578 (759)
Q Consensus 499 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 578 (759)
.+.++..+.+.|-++.|+++.+. +. .-.....+.|+.+.|.++.++. .+...|..+.+....
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D---------~~---~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~ 359 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTD---------PD---HRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEALR 359 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCC---------hH---HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHH
Confidence 44555555555555555554322 11 1122233455555555543321 244456666666666
Q ss_pred cCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHH
Q 004362 579 SGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYC 658 (759)
Q Consensus 579 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 658 (759)
.|+++-|.+.|++..+. ..+.-.|.-.|+.+.-.++.+.+.++| -++....++...|++++...
T Consensus 360 ~g~~~lAe~c~~k~~d~----------~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~ 423 (443)
T PF04053_consen 360 QGNIELAEECYQKAKDF----------SGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVD 423 (443)
T ss_dssp TTBHHHHHHHHHHCT-H----------HHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHH
T ss_pred cCCHHHHHHHHHhhcCc----------cccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHH
Confidence 66666666555554322 334444555555555555554444433 12333334444455555544
Q ss_pred HHH
Q 004362 659 LLL 661 (759)
Q Consensus 659 ~~~ 661 (759)
++.
T Consensus 424 lL~ 426 (443)
T PF04053_consen 424 LLI 426 (443)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 286
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.54 E-value=2.9 Score=36.39 Aligned_cols=103 Identities=9% Similarity=0.078 Sum_probs=70.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH-----HHHHHHHhcCcHHHHHHHHHHHHHCCCCCchHHHHHhc--
Q 004362 642 IMIDSFCKTGGINSGYCLLLENIDKGFIPSLSTIG-----RVINCLCVDHRVHEAVGFVHLMVQKGIVPEVVNTIFEA-- 714 (759)
Q Consensus 642 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~-- 714 (759)
.+...+...|++++|...++..+.. |.++.+. .+.......|.+|+|.+.++...+.++.+-........
T Consensus 94 ~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill 170 (207)
T COG2976 94 ELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILL 170 (207)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHH
Confidence 3455788899999999999998862 4444442 34455578999999999999876544433211111111
Q ss_pred cccccccchHHHHHHHhcCCCchHHHHHHHhhhh
Q 004362 715 DKREVASPKIVVEDLLKKSHITYYAYELLFDGIR 748 (759)
Q Consensus 715 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 748 (759)
..|+.++|+..|++.++.+..|.. .+.+..-|.
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~~s~~~-~~~lqmKLn 203 (207)
T COG2976 171 AKGDKQEARAAYEKALESDASPAA-REILQMKLN 203 (207)
T ss_pred HcCchHHHHHHHHHHHHccCChHH-HHHHHhHHH
Confidence 789999999999999999855443 234443343
No 287
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.48 E-value=0.71 Score=40.54 Aligned_cols=97 Identities=9% Similarity=-0.093 Sum_probs=56.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH---HH
Q 004362 603 ATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPD--NYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSLSTI---GR 677 (759)
Q Consensus 603 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~---~~ 677 (759)
..+..++..|.+.|+.++|.+.|.++.+....+. ...+..++......|++..+..++.++...--.+.+... ..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 4555666666666666666666666665543343 345566667777777877777777776542111121222 22
Q ss_pred HHHHH--HhcCcHHHHHHHHHHHH
Q 004362 678 VINCL--CVDHRVHEAVGFVHLMV 699 (759)
Q Consensus 678 l~~~~--~~~g~~~~A~~~~~~~~ 699 (759)
...++ ...+++.+|.+.|-...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 33333 35678888887776653
No 288
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.46 E-value=0.81 Score=46.87 Aligned_cols=131 Identities=11% Similarity=0.076 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004362 77 GVHIGVMRNYGRRGKVQEAVDVFERMDFYNCEPTVLSYNTIMNILVEYGYFSQVHKVYMRMRNKGIVPDVYTFVIRIKSF 156 (759)
Q Consensus 77 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 156 (759)
+....+++-+-+.|-.+.|+.+... +. .-.....+.|+++.|.++..+ .++...|..|....
T Consensus 296 ~~~~~i~~fL~~~G~~e~AL~~~~D---------~~---~rFeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~A 357 (443)
T PF04053_consen 296 DQGQSIARFLEKKGYPELALQFVTD---------PD---HRFELALQLGNLDIALEIAKE------LDDPEKWKQLGDEA 357 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHhhcCC---------hH---HHhHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHH
Confidence 3344455555555555555554321 11 122333455555555444222 12444555555555
Q ss_pred HccCChhhHHHHHhhchhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHH
Q 004362 157 CRTRRPHVALRLLKNMPSQGFEPNAVAYCTLIAGFYEENHNVEAYELFDEMLGMGISPDIATFNKLIHTLCKKGNVRESE 236 (759)
Q Consensus 157 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 236 (759)
.+.|+.+-|.+.|.+... +..|+-.|.-.|+.+...++.+.....|- ++....++...|+.++..
T Consensus 358 L~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv 422 (443)
T PF04053_consen 358 LRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECV 422 (443)
T ss_dssp HHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHH
T ss_pred HHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHH
Confidence 555555555555554332 23344444455555554444444444321 233333344445555544
Q ss_pred HHHH
Q 004362 237 KLFN 240 (759)
Q Consensus 237 ~~~~ 240 (759)
+++.
T Consensus 423 ~lL~ 426 (443)
T PF04053_consen 423 DLLI 426 (443)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 289
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.43 E-value=1.9 Score=42.98 Aligned_cols=140 Identities=13% Similarity=0.044 Sum_probs=85.0
Q ss_pred HHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH---cCC--CCC---HhhHHHHH
Q 004362 573 INGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSE---KGC--PPD---NYTYRIMI 644 (759)
Q Consensus 573 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~--~p~---~~~~~~l~ 644 (759)
+.+|....++..+.+-.+.+... ..+++.....-...+...|++.+|.+++...-- .|. .|. ...||.|+
T Consensus 213 Vr~llq~~~Lk~~krevK~vmn~--a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlG 290 (696)
T KOG2471|consen 213 VRFLLQTRNLKLAKREVKHVMNI--AQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLG 290 (696)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhh--cCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcc
Confidence 34444444555555555544443 223444445556777788888888888765421 111 121 22357787
Q ss_pred HHHHhcCChHHHHHHHHHHHh-------CCCCCC----------HHHHHHHHHHHHhcCcHHHHHHHHHHHHH-CCCCCc
Q 004362 645 DSFCKTGGINSGYCLLLENID-------KGFIPS----------LSTIGRVINCLCVDHRVHEAVGFVHLMVQ-KGIVPE 706 (759)
Q Consensus 645 ~~~~~~g~~~~A~~~~~~~~~-------~g~~p~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~ 706 (759)
-++.+.|.+.-+..+|.++++ .|+.|. ....+...-.+...|+.-.|.+.|.+... -.-.|-
T Consensus 291 cIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPr 370 (696)
T KOG2471|consen 291 CIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPR 370 (696)
T ss_pred eEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcH
Confidence 788888888888888888774 365552 22334445555788899999988888765 223566
Q ss_pred hHHHHHhc
Q 004362 707 VVNTIFEA 714 (759)
Q Consensus 707 ~~~~~~~~ 714 (759)
.|..+.++
T Consensus 371 lWLRlAEc 378 (696)
T KOG2471|consen 371 LWLRLAEC 378 (696)
T ss_pred HHHHHHHH
Confidence 77665554
No 290
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.39 E-value=1.9 Score=35.67 Aligned_cols=53 Identities=11% Similarity=0.003 Sum_probs=40.5
Q ss_pred HccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004362 577 CNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEK 631 (759)
Q Consensus 577 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 631 (759)
...++.+++..+++.+... .|.....-..-++.+...|+|.+|+.+++++.+.
T Consensus 21 L~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred HhcCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 3477888888888888777 6666666666677788888888888888888754
No 291
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.30 E-value=0.8 Score=37.33 Aligned_cols=49 Identities=6% Similarity=0.014 Sum_probs=26.6
Q ss_pred CCCcchHHHHHHHHHhCCChHHHHHHHHHHHHC-CCCCChhcHHHHHHHH
Q 004362 283 TPDVVTYNTLMCGLCKNSKVVEAEYYLHKMVNE-GLEPDGFSYNAVIDGY 331 (759)
Q Consensus 283 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~ 331 (759)
.|+..+..+++.+|+.++++..|.++++...+. +++.+..+|..|+.-+
T Consensus 49 ~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 49 YPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 455555555555565566666666655555443 4444455555555443
No 292
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.11 E-value=0.11 Score=31.11 Aligned_cols=26 Identities=4% Similarity=0.052 Sum_probs=17.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHH
Q 004362 639 TYRIMIDSFCKTGGINSGYCLLLENI 664 (759)
Q Consensus 639 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 664 (759)
+|..|+.+|...|++++|+.++++++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35667777777777777777777754
No 293
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.09 E-value=0.9 Score=39.92 Aligned_cols=184 Identities=9% Similarity=-0.035 Sum_probs=113.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCH
Q 004362 539 ESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNF 618 (759)
Q Consensus 539 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 618 (759)
..|-..|-+.-|..=|.+.... .|.-+.+|+.+.-.+...|+++.|.+.|+...+. .|....+..+.+-.+.-.|++
T Consensus 73 vlYDSlGL~~LAR~DftQaLai-~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--Dp~y~Ya~lNRgi~~YY~gR~ 149 (297)
T COG4785 73 VLYDSLGLRALARNDFSQALAI-RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRY 149 (297)
T ss_pred chhhhhhHHHHHhhhhhhhhhc-CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc--CCcchHHHhccceeeeecCch
Confidence 4566677777888778777764 2334667888888888999999999999999998 777777777777777788999
Q ss_pred HHHHHHHHHHHHcCCCCCH--hhHHHHHHHHHhcCChHHHHHHH-HHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHH
Q 004362 619 YMAEKLFYEMSEKGCPPDN--YTYRIMIDSFCKTGGINSGYCLL-LENIDKGFIPSLSTIGRVINCLCVDHRVHEAVGFV 695 (759)
Q Consensus 619 ~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~-~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 695 (759)
.-|.+-+.+.-+.+ +.|+ ..|..+. -..-+..+|..-+ +++.. .+..-|...+..++ .|+..+ ..++
T Consensus 150 ~LAq~d~~~fYQ~D-~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~y-LgkiS~-e~l~ 219 (297)
T COG4785 150 KLAQDDLLAFYQDD-PNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFY-LGKISE-ETLM 219 (297)
T ss_pred HhhHHHHHHHHhcC-CCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHH-HhhccH-HHHH
Confidence 99988888877553 3333 2332222 2234556665543 34433 34444544333332 222221 2344
Q ss_pred HHHHHCCCCCchHHH--------HHhc--cccccccchHHHHHHHhcCCC
Q 004362 696 HLMVQKGIVPEVVNT--------IFEA--DKREVASPKIVVEDLLKKSHI 735 (759)
Q Consensus 696 ~~~~~~~~~p~~~~~--------~~~~--~~~~~~~a~~~~~~~~~~~~~ 735 (759)
+++.+-.-+...... +... ..|..++|..+++-....+.-
T Consensus 220 ~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannVy 269 (297)
T COG4785 220 ERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNVY 269 (297)
T ss_pred HHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhHH
Confidence 454442222221111 1111 689999999999888876544
No 294
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.99 E-value=0.53 Score=44.08 Aligned_cols=77 Identities=13% Similarity=0.171 Sum_probs=46.3
Q ss_pred HHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHhhHHH
Q 004362 568 AFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSE-----KGCPPDNYTYRI 642 (759)
Q Consensus 568 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~~ 642 (759)
++..++..+...|+++.+...++++... .|-+...|..++.+|...|+...|+..|+++.+ .|+.|...+...
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~--dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIEL--DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 3445556666666666666666666666 566666666666666666666666666665543 356666555554
Q ss_pred HHHH
Q 004362 643 MIDS 646 (759)
Q Consensus 643 l~~~ 646 (759)
+..+
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4443
No 295
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.90 E-value=4.8 Score=36.42 Aligned_cols=207 Identities=12% Similarity=0.023 Sum_probs=99.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHh
Q 004362 464 FNTLIDGYCKQLKMEIAIEILNTMWSHGVTPDVITYNSLLNGLCKAAKSEDVMETFKTMIEKRCVPNIITYSILGESLCK 543 (759)
Q Consensus 464 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 543 (759)
|..-..+|...+++++|...+.+..+. ...+... +.....++.|..+.+++.+. .--...+......|..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnrsl-------fhAAKayEqaamLake~~kl--sEvvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSL-------FHAAKAYEQAAMLAKELSKL--SEVVDLYEKASELYVE 103 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccH-------HHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHH
Confidence 334444566667777776666555431 1111111 11223344444444444432 1112234444455555
Q ss_pred cCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCC----chhhHHHHHHHHHhcCCHH
Q 004362 544 AHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISH----TTATYNIMINAFSEKLNFY 619 (759)
Q Consensus 544 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~ 619 (759)
.|.++.|...+++.-+. ...-++++|+++|++........+ -...+....+++.+..+++
T Consensus 104 ~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~ 167 (308)
T KOG1585|consen 104 CGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFT 167 (308)
T ss_pred hCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhh
Confidence 66555555554443321 122344555555555443211111 1233444556666777777
Q ss_pred HHHHHHHHHHHc----CCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCC-HHHHHHHHHHHHhcCcHHHH
Q 004362 620 MAEKLFYEMSEK----GCPPD-NYTYRIMIDSFCKTGGINSGYCLLLENIDKGF--IPS-LSTIGRVINCLCVDHRVHEA 691 (759)
Q Consensus 620 ~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~--~p~-~~~~~~l~~~~~~~g~~~~A 691 (759)
+|-..+.+-... .-.++ ...+...+-.+....|+..|...++.--+-+- .|+ ..+...++. .+..|+.+++
T Consensus 168 Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~-ayd~gD~E~~ 246 (308)
T KOG1585|consen 168 EAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLT-AYDEGDIEEI 246 (308)
T ss_pred HHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHH-HhccCCHHHH
Confidence 776665543211 11122 23355555566777888888888887554211 122 222223332 2567888877
Q ss_pred HHHHHH
Q 004362 692 VGFVHL 697 (759)
Q Consensus 692 ~~~~~~ 697 (759)
.++..-
T Consensus 247 ~kvl~s 252 (308)
T KOG1585|consen 247 KKVLSS 252 (308)
T ss_pred HHHHcC
Confidence 766654
No 296
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.86 E-value=1.3 Score=38.96 Aligned_cols=99 Identities=17% Similarity=0.185 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004362 76 EGVHIGVMRNYGRRGKVQEAVDVFERMDFYNCEP--TVLSYNTIMNILVEYGYFSQVHKVYMRMRNKGIVPDVYTFVIRI 153 (759)
Q Consensus 76 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 153 (759)
...+..++..|.+.|+.+.|++.|.++.+....+ -...+-.+++.....+++..+.....+....-..+.......-+
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 3466678889999999999999999887554333 34557778888888899988888877765431111111111111
Q ss_pred H-----HHHccCChhhHHHHHhhchh
Q 004362 154 K-----SFCRTRRPHVALRLLKNMPS 174 (759)
Q Consensus 154 ~-----~~~~~~~~~~A~~~~~~~~~ 174 (759)
+ .+...+++..|-+.|-+...
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccCc
Confidence 1 13445777777777765543
No 297
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.65 E-value=0.74 Score=43.16 Aligned_cols=78 Identities=14% Similarity=0.152 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH-----CCCCCCHHHHHH
Q 004362 77 GVHIGVMRNYGRRGKVQEAVDVFERMDFYNCEPTVLSYNTIMNILVEYGYFSQVHKVYMRMRN-----KGIVPDVYTFVI 151 (759)
Q Consensus 77 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 151 (759)
.++..++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 456667777777777777777777776554 55666777777777777777777777777654 366677666666
Q ss_pred HHHH
Q 004362 152 RIKS 155 (759)
Q Consensus 152 l~~~ 155 (759)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5555
No 298
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.64 E-value=5.2 Score=35.96 Aligned_cols=101 Identities=8% Similarity=0.082 Sum_probs=59.3
Q ss_pred HHHHHHHHcc-CChhhHHHHHHHHHHccCCCCch----hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHH--
Q 004362 570 GTLINGFCNS-GDLDGAYQLFRRMEDQYKISHTT----ATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRI-- 642 (759)
Q Consensus 570 ~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~-- 642 (759)
..+...|..- .++++|+..|+..-+-+...... ..+.-.+..-...+++.+|+.+|++.....+..+..-|..
T Consensus 117 ~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kd 196 (288)
T KOG1586|consen 117 IEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKD 196 (288)
T ss_pred hhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHH
Confidence 3445555443 66777888887776543222211 2223334445567899999999999876644433322211
Q ss_pred -HH---HHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 004362 643 -MI---DSFCKTGGINSGYCLLLENIDKGFIPSL 672 (759)
Q Consensus 643 -l~---~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 672 (759)
++ -++.-..|.-.+...+++-.+ +.|..
T Consensus 197 yflkAgLChl~~~D~v~a~~ALeky~~--~dP~F 228 (288)
T KOG1586|consen 197 YFLKAGLCHLCKADEVNAQRALEKYQE--LDPAF 228 (288)
T ss_pred HHHHHHHHhHhcccHHHHHHHHHHHHh--cCCcc
Confidence 11 122333777778888888888 78853
No 299
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.53 E-value=0.17 Score=30.38 Aligned_cols=26 Identities=8% Similarity=0.111 Sum_probs=20.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004362 604 TYNIMINAFSEKLNFYMAEKLFYEMS 629 (759)
Q Consensus 604 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 629 (759)
+|..|+.+|...|++++|+++|++++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788889999999999999998855
No 300
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=93.48 E-value=14 Score=40.44 Aligned_cols=150 Identities=11% Similarity=0.058 Sum_probs=67.9
Q ss_pred HHHHHHHHHHhcCCCCcc--HHHHHHHHHHHH-hcCChhHHHHHHHHhhhCCCCCCHH-----HHHHHHHHHHHcCChhH
Q 004362 58 EMENLLLEMRMDVDDSLL--EGVHIGVMRNYG-RRGKVQEAVDVFERMDFYNCEPTVL-----SYNTIMNILVEYGYFSQ 129 (759)
Q Consensus 58 ~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~ 129 (759)
.|++.++.+.+..+.++. ..++..++..+. ...+++.|...+++.....-.++.. +...+++.+.+.+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~- 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA- 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence 366666666643322112 224455666665 5667777777777664322122211 1223344444444333
Q ss_pred HHHHHHHHHHCCCC----CCHHHHHHH-HHHHHccCChhhHHHHHhhchhCC---CCCCHHhHHHHHHHHH--hcCChhH
Q 004362 130 VHKVYMRMRNKGIV----PDVYTFVIR-IKSFCRTRRPHVALRLLKNMPSQG---FEPNAVAYCTLIAGFY--EENHNVE 199 (759)
Q Consensus 130 a~~~~~~~~~~~~~----~~~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~~~~~~~ 199 (759)
|....++.++.--. +-...|..+ +..+...+++..|.+.++.+.... ..|...++-.++.+.. +.+..++
T Consensus 118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d 197 (608)
T PF10345_consen 118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDD 197 (608)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchh
Confidence 66666666543111 111222222 222222356666666665554421 1223333333333322 3344555
Q ss_pred HHHHHHHHH
Q 004362 200 AYELFDEML 208 (759)
Q Consensus 200 a~~~~~~~~ 208 (759)
+++..+++.
T Consensus 198 ~~~~l~~~~ 206 (608)
T PF10345_consen 198 VLELLQRAI 206 (608)
T ss_pred HHHHHHHHH
Confidence 555555553
No 301
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.47 E-value=4.1 Score=34.25 Aligned_cols=41 Identities=15% Similarity=0.136 Sum_probs=19.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004362 467 LIDGYCKQLKMEIAIEILNTMWSHGVTPDVITYNSLLNGLCK 508 (759)
Q Consensus 467 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 508 (759)
++..+...+........++.+...+. .+....+.++..|++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~ 53 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence 34444444455555555555544432 344445555555544
No 302
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.39 E-value=13 Score=39.91 Aligned_cols=76 Identities=11% Similarity=0.111 Sum_probs=37.1
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCcHHHHHHHHHHHHHCCCCCchHH---HHHhc---ccccccc
Q 004362 652 GINSGYCLLLENIDKGFIPSLSTIGRVINCLCV----DHRVHEAVGFVHLMVQKGIVPEVVN---TIFEA---DKREVAS 721 (759)
Q Consensus 652 ~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~---~~~~~---~~~~~~~ 721 (759)
+...+...+.++...| +......+...+.. ..+++.|...+.+...++ +.... ...+. ..+ ...
T Consensus 454 ~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~--~~~~~nlg~~~e~g~g~~~-~~~ 527 (552)
T KOG1550|consen 454 TLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG--AQALFNLGYMHEHGEGIKV-LHL 527 (552)
T ss_pred chhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh--hHHHhhhhhHHhcCcCcch-hHH
Confidence 3455555555555432 23333344444421 235777777777777665 33111 12222 223 566
Q ss_pred chHHHHHHHhcC
Q 004362 722 PKIVVEDLLKKS 733 (759)
Q Consensus 722 a~~~~~~~~~~~ 733 (759)
|+..+++..+.+
T Consensus 528 a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 528 AKRYYDQASEED 539 (552)
T ss_pred HHHHHHHHHhcC
Confidence 666666666543
No 303
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=93.27 E-value=0.13 Score=30.27 Aligned_cols=30 Identities=10% Similarity=0.225 Sum_probs=18.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 004362 639 TYRIMIDSFCKTGGINSGYCLLLENIDKGFIP 670 (759)
Q Consensus 639 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 670 (759)
+|..++..|...|++++|...|+++++ +.|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~--~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE--LNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH--HHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh--hCC
Confidence 455566666666666666666666665 444
No 304
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.99 E-value=11 Score=37.89 Aligned_cols=65 Identities=9% Similarity=-0.026 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHccCChhhHHHHHHHHHHccCCC--CchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004362 566 TVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKIS--HTTATYNIMINAFSEKLNFYMAEKLFYEMSE 630 (759)
Q Consensus 566 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 630 (759)
..+|..++..+.+.|.++.|...+.++....... ..+......+..+-..|+..+|+..+++..+
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445555555555566665555555554431110 1233344444555555555555555555544
No 305
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=92.98 E-value=1 Score=38.53 Aligned_cols=77 Identities=18% Similarity=0.224 Sum_probs=46.8
Q ss_pred hhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCC-----------HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc
Q 004362 582 LDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLN-----------FYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKT 650 (759)
Q Consensus 582 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 650 (759)
+++|+.-|+.++.. .|....++.+++.+|...+. +++|...|+++.+. .|+...|+.-+....
T Consensus 51 iedAisK~eeAL~I--~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~-- 124 (186)
T PF06552_consen 51 IEDAISKFEEALKI--NPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMAA-- 124 (186)
T ss_dssp HHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH--
Confidence 45555666666666 67777777777777765432 55666667777644 788888877666543
Q ss_pred CChHHHHHHHHHHHhCCC
Q 004362 651 GGINSGYCLLLENIDKGF 668 (759)
Q Consensus 651 g~~~~A~~~~~~~~~~g~ 668 (759)
+|-.+..++.+.++
T Consensus 125 ----kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 125 ----KAPELHMEIHKQGL 138 (186)
T ss_dssp ----THHHHHHHHHHSSS
T ss_pred ----hhHHHHHHHHHHHh
Confidence 35666666666543
No 306
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=92.97 E-value=0.51 Score=44.42 Aligned_cols=95 Identities=12% Similarity=-0.013 Sum_probs=71.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 004362 80 IGVMRNYGRRGKVQEAVDVFERMDFYNCEPTVLSYNTIMNILVEYGYFSQVHKVYMRMRNKGIVPDVYTFVIRIKSFCRT 159 (759)
Q Consensus 80 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 159 (759)
-.-+..|+++|+|++|+++|.+..... +.|++.+..-..+|.+...|..|..-.+..+..+ ..-..+|...+.+-...
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESL 178 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHH
Confidence 345778899999999999998776544 4588888888888999888888888887777642 12245677777777777
Q ss_pred CChhhHHHHHhhchhCC
Q 004362 160 RRPHVALRLLKNMPSQG 176 (759)
Q Consensus 160 ~~~~~A~~~~~~~~~~~ 176 (759)
|...+|.+-.+.+++..
T Consensus 179 g~~~EAKkD~E~vL~LE 195 (536)
T KOG4648|consen 179 GNNMEAKKDCETVLALE 195 (536)
T ss_pred hhHHHHHHhHHHHHhhC
Confidence 88888888888877764
No 307
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.86 E-value=4.8 Score=33.40 Aligned_cols=52 Identities=13% Similarity=0.061 Sum_probs=34.3
Q ss_pred hCCChHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 004362 52 FHGNFEEMENLLLEMRMDVDDSLLEGVHIGVMRNYGRRGKVQEAVDVFERMDFY 105 (759)
Q Consensus 52 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 105 (759)
..++.+++..++..+....|. ..++-.--+..+...|++++|+.+|..+.+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~--~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPN--LKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCC--ccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 466777777777777666666 5555555556666777777777777776644
No 308
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=92.70 E-value=4.5 Score=32.62 Aligned_cols=137 Identities=14% Similarity=0.207 Sum_probs=67.8
Q ss_pred cCCChHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHH
Q 004362 16 HQKNPLTALEMFNSVKREDGFKHTLLTYKYMIDKLGFHGNFEEMENLLLEMRMDVDDSLLEGVHIGVMRNYGRRGKVQEA 95 (759)
Q Consensus 16 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 95 (759)
..|..++..++.......+ +..-+++++--...+-+=+-..+.++.+-+.+.- ...|+....
T Consensus 14 ldG~V~qGveii~k~v~Ss----ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDi--------------s~C~NlKrV 75 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNSS----NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDI--------------SKCGNLKRV 75 (161)
T ss_dssp HTT-HHHHHHHHHHHHHHS-----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-G--------------GG-S-THHH
T ss_pred HhchHHHHHHHHHHHcCcC----CccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------hhhcchHHH
Confidence 3456666666666554432 2333444444444444444444555554444321 234455555
Q ss_pred HHHHHHhhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHhhchhC
Q 004362 96 VDVFERMDFYNCEPTVLSYNTIMNILVEYGYFSQVHKVYMRMRNKGIVPDVYTFVIRIKSFCRTRRPHVALRLLKNMPSQ 175 (759)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 175 (759)
+.++-.+- .+..-....+..+..+|.-++..+++.++.+.+ .+++.....+..+|.+.|+..++.+++.+.-+.
T Consensus 76 i~C~~~~n-----~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 76 IECYAKRN-----KLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 55554433 223334445566677777777777777766432 466666677777777777777777777776666
Q ss_pred C
Q 004362 176 G 176 (759)
Q Consensus 176 ~ 176 (759)
|
T Consensus 150 G 150 (161)
T PF09205_consen 150 G 150 (161)
T ss_dssp T
T ss_pred c
Confidence 5
No 309
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.41 E-value=6.5 Score=33.79 Aligned_cols=99 Identities=17% Similarity=0.202 Sum_probs=43.9
Q ss_pred HhhchhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCC
Q 004362 169 LKNMPSQGFEPNAVAYCTLIAGFYEENHNVEAYELFDEMLGMGISPDIATFNKLIHTLCKKGNVRESEKLFNKVLKRGVS 248 (759)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 248 (759)
+..+...+++|+...+..++..+.+.|++... ..+.+.++-+|+......+-.+. +....+.++--.|.++
T Consensus 17 irSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR--- 87 (167)
T PF07035_consen 17 IRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR--- 87 (167)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH---
Confidence 33344445556666666666666666554332 23333344444444333332221 2223333333333322
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004362 249 PNLFTFNMFIQGLCRKGAISEAISLLDSL 277 (759)
Q Consensus 249 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 277 (759)
=...+..++..+...|++-+|++..+..
T Consensus 88 -L~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 88 -LGTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred -hhhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 0012334455555566666666655554
No 310
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=92.16 E-value=0.31 Score=48.40 Aligned_cols=104 Identities=14% Similarity=0.010 Sum_probs=84.9
Q ss_pred HHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcC
Q 004362 573 INGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPD-NYTYRIMIDSFCKTG 651 (759)
Q Consensus 573 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 651 (759)
+.-+...++++.|+.+|.++++. .|+....|..-+.++.+.+++..|+.=+.++++. .|. ...|..=+.+|.+.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~--dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIEL--DPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhc--CchhhheeeeccHHHHhHH
Confidence 34455678899999999999988 7888888888888889999999999988888865 465 667777777888889
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004362 652 GINSGYCLLLENIDKGFIPSLSTIGRVINCL 682 (759)
Q Consensus 652 ~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 682 (759)
.+.+|+..|+.... +.|+.......+..+
T Consensus 87 ~~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 87 EFKKALLDLEKVKK--LAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHHhhh--cCcCcHHHHHHHHHH
Confidence 99999999999888 889888777776655
No 311
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.08 E-value=9.6 Score=34.98 Aligned_cols=158 Identities=12% Similarity=0.045 Sum_probs=92.6
Q ss_pred hCCChHHHHHHHHHHHhcCCCCcc--HHHHHHHHHHHHhcCChhHHHHHHHHhhh---CCC--CCCHHHHHHHHHHHHHc
Q 004362 52 FHGNFEEMENLLLEMRMDVDDSLL--EGVHIGVMRNYGRRGKVQEAVDVFERMDF---YNC--EPTVLSYNTIMNILVEY 124 (759)
Q Consensus 52 ~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~--~~~~~~~~~l~~~~~~~ 124 (759)
+..+.++|+..|+++....+.... -.++..++..+.+.|++++....+.++.. +.+ ..+..+-|+++.-...+
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 445777788888777776644111 12445577778888888887777766541 111 23455666676666666
Q ss_pred CChhHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHccCChhhHHHHHhhchhC-----CC------CCCHHhHHHHH
Q 004362 125 GYFSQVHKVYMRMRNK-----GIVPDVYTFVIRIKSFCRTRRPHVALRLLKNMPSQ-----GF------EPNAVAYCTLI 188 (759)
Q Consensus 125 ~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~------~~~~~~~~~l~ 188 (759)
++.+....+|+.-.+. +-..-..|-+.+...|...+++....+++.++... |- ..=...|..-|
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 6666666666554321 00111223456677777778777777777766432 10 01123566666
Q ss_pred HHHHhcCChhHHHHHHHHHHh
Q 004362 189 AGFYEENHNVEAYELFDEMLG 209 (759)
Q Consensus 189 ~~~~~~~~~~~a~~~~~~~~~ 209 (759)
..|....+......+|++.+.
T Consensus 199 QmYT~qKnNKkLK~lYeqalh 219 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALH 219 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHH
Confidence 777777777777777776653
No 312
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=92.00 E-value=22 Score=39.03 Aligned_cols=223 Identities=11% Similarity=0.018 Sum_probs=121.1
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChh-------cHHHH-HHHHHhcCCHHHHHHHHHHHHHC----CCCccHHHHHHHH
Q 004362 506 LCKAAKSEDVMETFKTMIEKRCVPNII-------TYSIL-GESLCKAHKITEAFNLLEEMENK----GLTLDTVAFGTLI 573 (759)
Q Consensus 506 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l-~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~ 573 (759)
.....++++|..+..++...-..|+.. .+..+ .......|+++.|.++.+..... ...+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 345678999998888887652232222 22222 22334678999999999888764 2233455677777
Q ss_pred HHHHccCChhhHHHHHHHHHHccCC--CCchhhHHH--HHHHHHhcCC--HHHHHHHHHHHHHcCC--CCC----HhhHH
Q 004362 574 NGFCNSGDLDGAYQLFRRMEDQYKI--SHTTATYNI--MINAFSEKLN--FYMAEKLFYEMSEKGC--PPD----NYTYR 641 (759)
Q Consensus 574 ~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~--l~~~~~~~g~--~~~A~~~~~~~~~~~~--~p~----~~~~~ 641 (759)
.+..-.|++++|..+.....+.... ......|.. -...+..+|. +.+....+........ .|- ..++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 8888899999999998877654111 111122222 2345567773 3333333443332211 111 22344
Q ss_pred HHHHHHHh-cCChHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHhcCcHHHHHHHHHHHHHCCCCC--c-hH-H-----
Q 004362 642 IMIDSFCK-TGGINSGYCLLLENIDKGFIPSLSTIG--RVINCLCVDHRVHEAVGFVHLMVQKGIVP--E-VV-N----- 709 (759)
Q Consensus 642 ~l~~~~~~-~g~~~~A~~~~~~~~~~g~~p~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~-~~-~----- 709 (759)
.+.+++.+ .+.-.++..-++-.......|-..... .+.......|+.++|...++++......+ . .| .
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v 664 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKV 664 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHh
Confidence 44454444 222233333333333322223222222 45555578999999999999887633333 2 11 1
Q ss_pred -HHHhccccccccchHHHHH
Q 004362 710 -TIFEADKREVASPKIVVED 728 (759)
Q Consensus 710 -~~~~~~~~~~~~a~~~~~~ 728 (759)
.++....|+.+.+.....+
T Consensus 665 ~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 665 KLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hHHHhcccCCHHHHHHHHHh
Confidence 1222267777777665544
No 313
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=91.93 E-value=20 Score=38.33 Aligned_cols=254 Identities=13% Similarity=0.046 Sum_probs=136.4
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHH----HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 004362 401 LSQQGLILQALQLMNEMSESGCCPDMWTY----NIVINGLCKMGCVSDANNLVNDAISKGYIPDIFTFNTLIDGYCKQLK 476 (759)
Q Consensus 401 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 476 (759)
..+.|+..++.+++.-..-..-.+ ...| ..+.-++...|......+++.+.++..-.+....-.+|.-+++..|.
T Consensus 367 vIH~G~~~~~~~ll~pYLP~~~~~-~s~y~EGGalyAlGLIhA~hG~~~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGS 445 (929)
T KOG2062|consen 367 VIHRGHENQAMKLLAPYLPKEAGE-GSGYKEGGALYALGLIHANHGRGITDYLLQQLKTAENEVVRHGACLGLGLAGMGS 445 (929)
T ss_pred eeeccccchHHHHhhhhCCccCCC-CCCccccchhhhhhccccCcCccHHHHHHHHHHhccchhhhhhhhhhccchhccc
Confidence 345678888888887765441111 1111 11222334455555577777776665322222222334444444443
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCCH-HHHHH-HHHHHHHcCCCCChhcHH--HHHHHHHhcCCHHHH
Q 004362 477 MEIAIEILNTMWSHGVTPDVITYN--SLLNGLCKAAKS-EDVME-TFKTMIEKRCVPNIITYS--ILGESLCKAHKITEA 550 (759)
Q Consensus 477 ~~~A~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~-~~a~~-~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a 550 (759)
.. .++|++++..-..-+..+-. .+...+.-.|.. .+|++ ++.-..+.. ...+.. .++-++..-|+-++|
T Consensus 446 a~--~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~~eaiedm~~Ya~ETQ---Heki~RGl~vGiaL~~ygrqe~A 520 (929)
T KOG2062|consen 446 AN--EEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTANQEAIEDMLTYAQETQ---HEKIIRGLAVGIALVVYGRQEDA 520 (929)
T ss_pred cc--HHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCcHHHHHHHHHHhhhhh---HHHHHHHHHHhHHHHHhhhhhhh
Confidence 22 34555544321111222211 122223333332 22322 332222211 112222 334556677888899
Q ss_pred HHHHHHHHHCCCCccHH--HHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 004362 551 FNLLEEMENKGLTLDTV--AFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEM 628 (759)
Q Consensus 551 ~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 628 (759)
..+.+++.... .|-.. -...++.+|+-.|+..-..+++.-.... ..+|..-...++-++.-..+++....+.+-+
T Consensus 521 d~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD--~nDDVrRaAVialGFVl~~dp~~~~s~V~lL 597 (929)
T KOG2062|consen 521 DPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD--VNDDVRRAAVIALGFVLFRDPEQLPSTVSLL 597 (929)
T ss_pred HHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhcccccc--cchHHHHHHHHHheeeEecChhhchHHHHHH
Confidence 99999998652 22211 2345667888888888777777766554 4445555556666677778888888887777
Q ss_pred HHcCCCCCH--hhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004362 629 SEKGCPPDN--YTYRIMIDSFCKTGGINSGYCLLLENID 665 (759)
Q Consensus 629 ~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 665 (759)
.+. ..|.. .+-..|+-+|...|+ .+|+.+++.+..
T Consensus 598 ses-~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~ 634 (929)
T KOG2062|consen 598 SES-YNPHVRYGAAMALGIACAGTGL-KEAINLLEPLTS 634 (929)
T ss_pred hhh-cChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhc
Confidence 654 45542 334556667777776 678888888776
No 314
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.84 E-value=13 Score=35.95 Aligned_cols=148 Identities=13% Similarity=0.077 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHcCCCCChhcHHHHHHHHHh--c----CCHHHHHHHHHHHHHCCC---CccHHHHHHHHHHHHccCC---
Q 004362 514 DVMETFKTMIEKRCVPNIITYSILGESLCK--A----HKITEAFNLLEEMENKGL---TLDTVAFGTLINGFCNSGD--- 581 (759)
Q Consensus 514 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~--- 581 (759)
+.+.+++.|.+.|+.-+..++......... . ....++..+|+.|.+... .++-..+..++.. ..++
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~ 157 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEE 157 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHH
Confidence 345566666666665554443332222222 1 124557777777776521 1222223333221 2222
Q ss_pred -hhhHHHHHHHHHHccCCC-CchhhHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHH
Q 004362 582 -LDGAYQLFRRMEDQYKIS-HTTATYNIMINAFSEKLN--FYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGY 657 (759)
Q Consensus 582 -~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 657 (759)
.+.+..+|+.+.+.+-.. ++......++........ ...+.++++.+.+.++++....|..++-.....+..++..
T Consensus 158 l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~~~ 237 (297)
T PF13170_consen 158 LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEKIV 237 (297)
T ss_pred HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHHHH
Confidence 345556666666532222 222222222222211111 4467777888888887777666766665444444443444
Q ss_pred HHHHHH
Q 004362 658 CLLLEN 663 (759)
Q Consensus 658 ~~~~~~ 663 (759)
..+.++
T Consensus 238 ~~i~ev 243 (297)
T PF13170_consen 238 EEIKEV 243 (297)
T ss_pred HHHHHH
Confidence 444443
No 315
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=91.73 E-value=0.82 Score=45.19 Aligned_cols=130 Identities=9% Similarity=-0.006 Sum_probs=94.5
Q ss_pred HHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHH
Q 004362 576 FCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINS 655 (759)
Q Consensus 576 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 655 (759)
-...|++-.|-+-+..+... .|.++.........+...|+++.+...+...... +.....+..+++....+.|++++
T Consensus 299 ~~~~gd~~aas~~~~~~lr~--~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRN--QQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred HhhccCHHHHHHHHHHHHHh--CCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHH
Confidence 34568888887776666666 6777777777788889999999999998876532 33456788889999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCchHHHH
Q 004362 656 GYCLLLENIDKGFIPSLSTIGRVINCLCVDHRVHEAVGFVHLMVQKGIVPEVVNTI 711 (759)
Q Consensus 656 A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 711 (759)
|......|+...+. +.+.........-..|-+|++.-.+++... +.|+.-..|
T Consensus 376 a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~--~~~~~~~g~ 428 (831)
T PRK15180 376 ALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLL--LNPETQSGW 428 (831)
T ss_pred HHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhc--cCChhcccc
Confidence 99999988874333 333333333333567899999999999887 666633333
No 316
>PRK12798 chemotaxis protein; Reviewed
Probab=91.73 E-value=15 Score=36.56 Aligned_cols=155 Identities=12% Similarity=0.078 Sum_probs=63.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHH-hcCCHHHHHHHHHHHHHC--CCCccHHHHHHHHHHHHccCChhhH
Q 004362 509 AAKSEDVMETFKTMIEKRCVPNIITYSILGESLC-KAHKITEAFNLLEEMENK--GLTLDTVAFGTLINGFCNSGDLDGA 585 (759)
Q Consensus 509 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A 585 (759)
.|+.+++.+.+..+.....++....+..|+.+-. ...+...|+.+|+...-. |--........-+......|+.+++
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf 204 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKF 204 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHH
Confidence 3445555555444444333333334444433322 233455555555554432 1001112233333444555555555
Q ss_pred HHHHHHHHHccCCCCc-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HhhHHHHHHHHHhcCChHHHHHHHHH
Q 004362 586 YQLFRRMEDQYKISHT-TATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPD--NYTYRIMIDSFCKTGGINSGYCLLLE 662 (759)
Q Consensus 586 ~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~ 662 (759)
..+-.+....+...+- ...+..+..++.+.++-..-.. +..++.. ++|+ ...|..+...-...|+.+-|...-++
T Consensus 205 ~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~-l~~~ls~-~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 205 EALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDAR-LVEILSF-MDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHH-HHHHHHh-cCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 5555555444322221 1122222223333222111111 2222221 2333 34555555555666666666666666
Q ss_pred HHh
Q 004362 663 NID 665 (759)
Q Consensus 663 ~~~ 665 (759)
+..
T Consensus 283 A~~ 285 (421)
T PRK12798 283 ALK 285 (421)
T ss_pred HHH
Confidence 654
No 317
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.54 E-value=0.14 Score=48.25 Aligned_cols=118 Identities=14% Similarity=0.027 Sum_probs=76.3
Q ss_pred HccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCChHH
Q 004362 577 CNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPD-NYTYRIMIDSFCKTGGINS 655 (759)
Q Consensus 577 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 655 (759)
...|.++.|++.|...+.. .|+....|..-+.++...++...|++-+..+.+ ++|| ...|-.-..+....|+|++
T Consensus 125 ln~G~~~~ai~~~t~ai~l--np~~a~l~~kr~sv~lkl~kp~~airD~d~A~e--in~Dsa~~ykfrg~A~rllg~~e~ 200 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIEL--NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIE--INPDSAKGYKFRGYAERLLGNWEE 200 (377)
T ss_pred hcCcchhhhhccccccccc--CCchhhhcccccceeeeccCCchhhhhhhhhhc--cCcccccccchhhHHHHHhhchHH
Confidence 3567788888888888777 777777777777888888888888877777774 3566 4555555566677788888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 004362 656 GYCLLLENIDKGFIPSLSTIGRVINCLCVDHRVHEAVGFVHLMVQ 700 (759)
Q Consensus 656 A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 700 (759)
|.+.+..+.+.++.+....+ +-...-+.+..++-...+++..+
T Consensus 201 aa~dl~~a~kld~dE~~~a~--lKeV~p~a~ki~e~~~k~er~~~ 243 (377)
T KOG1308|consen 201 AAHDLALACKLDYDEANSAT--LKEVFPNAGKIEEHRRKYERARE 243 (377)
T ss_pred HHHHHHHHHhccccHHHHHH--HHHhccchhhhhhchhHHHHHHH
Confidence 88888877775555543333 22222334444444444444433
No 318
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=91.40 E-value=1.7 Score=40.01 Aligned_cols=34 Identities=12% Similarity=0.092 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCC
Q 004362 513 EDVMETFKTMIEKRCVPNIITYSILGESLCKAHK 546 (759)
Q Consensus 513 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 546 (759)
+=++.++++|...|+.||..+-..+++++.+.+-
T Consensus 140 ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 140 NCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 3467888888888888888888888888877664
No 319
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=91.34 E-value=0.57 Score=27.48 Aligned_cols=30 Identities=13% Similarity=0.004 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhcCC
Q 004362 42 TYKYMIDKLGFHGNFEEMENLLLEMRMDVD 71 (759)
Q Consensus 42 ~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~ 71 (759)
.|..++.++...|++++|+..|+++++.+|
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 344455555555555555555555555444
No 320
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=91.32 E-value=0.57 Score=27.42 Aligned_cols=30 Identities=17% Similarity=0.100 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhcCC
Q 004362 42 TYKYMIDKLGFHGNFEEMENLLLEMRMDVD 71 (759)
Q Consensus 42 ~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~ 71 (759)
.+..++.++...|++++|++.|+++....|
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 344455555555555555555555555444
No 321
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.10 E-value=4.2 Score=41.93 Aligned_cols=100 Identities=12% Similarity=0.176 Sum_probs=50.2
Q ss_pred HhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHH
Q 004362 87 GRRGKVQEAVDVFERMDFYNCEPTVLSYNTIMNILVEYGYFSQVHKVYMRMRNKGIVPDVYTFVIRIKSFCRTRRPHVAL 166 (759)
Q Consensus 87 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 166 (759)
.+.|+++.|.++..+.. +..-|..|..+....+++..|.++|..... |..|+-.+...|+.+...
T Consensus 648 l~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~ 712 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLA 712 (794)
T ss_pred hhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHH
Confidence 45556666655554432 344466666666666666666666655443 334444455555555444
Q ss_pred HHHhhchhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 004362 167 RLLKNMPSQGFEPNAVAYCTLIAGFYEENHNVEAYELFDEM 207 (759)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 207 (759)
.+-....+.| .. |...-++...|+++++.+++..-
T Consensus 713 ~la~~~~~~g-~~-----N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 713 VLASLAKKQG-KN-----NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHHhhc-cc-----chHHHHHHHcCCHHHHHHHHHhc
Confidence 4444444443 11 12222344556666666655543
No 322
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=90.70 E-value=21 Score=36.35 Aligned_cols=165 Identities=14% Similarity=0.136 Sum_probs=68.5
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHH
Q 004362 460 DIFTFNTLIDGYCKQLKMEIAIEILNTMWSHGVTPDVITYNSLLNGLCKAAKSEDVMETFKTMIEKRCVPNIITYSILGE 539 (759)
Q Consensus 460 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 539 (759)
|.....+++..+.....+.-.+.+..+|...| .+-..+..++.+|... ..++-..+|+++.+..+. |...-..++.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 33344444445554444444455555555432 2344444555555444 344444555555444221 2222223333
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCC-----ccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHh
Q 004362 540 SLCKAHKITEAFNLLEEMENKGLT-----LDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSE 614 (759)
Q Consensus 540 ~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 614 (759)
.|.+ ++.+.+..+|..+...-++ .-.+.|..+... -..+.+....+...+....+...-...+..+..-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 3322 4444555555444432111 011223333221 1233444444444444433222233333334444445
Q ss_pred cCCHHHHHHHHHHHHHc
Q 004362 615 KLNFYMAEKLFYEMSEK 631 (759)
Q Consensus 615 ~g~~~~A~~~~~~~~~~ 631 (759)
..++.+|+++++.+++.
T Consensus 218 ~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 218 NENWTEAIRILKHILEH 234 (711)
T ss_pred ccCHHHHHHHHHHHhhh
Confidence 55555555555544443
No 323
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=90.70 E-value=5 Score=36.17 Aligned_cols=115 Identities=6% Similarity=-0.064 Sum_probs=57.6
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCccHHH-HHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHH
Q 004362 541 LCKAHKITEAFNLLEEMENKGLTLDTVA-FGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFY 619 (759)
Q Consensus 541 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 619 (759)
|....+++.|+..|.+.+.. .|+..+ |..=+.++.+..+++.+..--.+..+. .|+......-++..+.....++
T Consensus 20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhcccc
Confidence 33344555666655555542 344322 333444555566666666655555555 5555555555556666666666
Q ss_pred HHHHHHHHHHH----cCCCCCHhhHHHHHHHHHhcCChHHHHHH
Q 004362 620 MAEKLFYEMSE----KGCPPDNYTYRIMIDSFCKTGGINSGYCL 659 (759)
Q Consensus 620 ~A~~~~~~~~~----~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 659 (759)
+|+..++++.. ..+++...++..|..+-...=...+..++
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri 139 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRI 139 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHH
Confidence 66666665522 12233344455554443333333334333
No 324
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=90.63 E-value=1.2 Score=29.49 Aligned_cols=40 Identities=8% Similarity=-0.020 Sum_probs=28.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004362 640 YRIMIDSFCKTGGINSGYCLLLENIDKGFIPSLSTIGRVINC 681 (759)
Q Consensus 640 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 681 (759)
...+.-++.+.|++++|+.+.+.+++ +.|++.-...+...
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L~~~ 43 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSLKEL 43 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHHHHH
Confidence 34566678888888888888888888 88887766555443
No 325
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=90.08 E-value=22 Score=35.66 Aligned_cols=65 Identities=12% Similarity=0.031 Sum_probs=44.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---ChhcHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004362 495 DVITYNSLLNGLCKAAKSEDVMETFKTMIEKRCVP---NIITYSILGESLCKAHKITEAFNLLEEMEN 559 (759)
Q Consensus 495 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 559 (759)
...+|..++..+.+.|+++.|...+..+...+... .+.....-+..+...|+..+|+..++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45567777778888888888888888777643111 334444556666777888888888877776
No 326
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=90.04 E-value=3.8 Score=37.29 Aligned_cols=66 Identities=12% Similarity=0.025 Sum_probs=38.0
Q ss_pred HhhHHHHHHHHHhcCC-------hHHHHHHHHHHHhCCCCC----CHHHHHHHHHHH-HhcCcHHHHHHHHHHHHHCC
Q 004362 637 NYTYRIMIDSFCKTGG-------INSGYCLLLENIDKGFIP----SLSTIGRVINCL-CVDHRVHEAVGFVHLMVQKG 702 (759)
Q Consensus 637 ~~~~~~l~~~~~~~g~-------~~~A~~~~~~~~~~g~~p----~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~ 702 (759)
...+.-++|.|...|+ +..|+..|.++.+..-.| +......+++.+ .+.|+.++|.+++.++...+
T Consensus 118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 3455556666666666 344555555655432222 223344444444 67788888888888877643
No 327
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=89.93 E-value=2.9 Score=38.49 Aligned_cols=104 Identities=21% Similarity=0.223 Sum_probs=60.5
Q ss_pred CHHhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhH
Q 004362 390 SIVLYNTLIKGLSQQ-----GLILQALQLMNEMSESGCCPDMWTYNIVINGLCKMGCVSDANNLVNDAISKGYIPDIFTF 464 (759)
Q Consensus 390 ~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 464 (759)
|-.+|-..+..+... +.++-....++.|.+-|+.-|..+|..++..+-+-.- .|. .++
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~-nvf 128 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQ-NVF 128 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccH-HHH
Confidence 445555555544332 3344444455556666666666666666554432111 111 111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 004362 465 NTLIDGYCKQLKMEIAIEILNTMWSHGVTPDVITYNSLLNGLCKAAKS 512 (759)
Q Consensus 465 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 512 (759)
....-.|- .+-+-++.++++|...|+.||..+-..++.++.+.+-+
T Consensus 129 Q~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 129 QKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 11111122 22356889999999999999999999999999887754
No 328
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.92 E-value=0.48 Score=44.81 Aligned_cols=118 Identities=10% Similarity=-0.023 Sum_probs=68.7
Q ss_pred hcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHH
Q 004362 543 KAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAE 622 (759)
Q Consensus 543 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 622 (759)
..|.+++|++.+...+.. -++....|..-..++.+.++...|++-+...... .|+...-|-.-..+....|+|++|.
T Consensus 126 n~G~~~~ai~~~t~ai~l-np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIEL-NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred cCcchhhhhccccccccc-CCchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHHHH
Confidence 456667777766666665 2444455555556666677777777777666666 5556666666666666667777777
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004362 623 KLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCLLLENID 665 (759)
Q Consensus 623 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 665 (759)
..+..+.+.++.+....| +-...-..+..++-...+++..+
T Consensus 203 ~dl~~a~kld~dE~~~a~--lKeV~p~a~ki~e~~~k~er~~~ 243 (377)
T KOG1308|consen 203 HDLALACKLDYDEANSAT--LKEVFPNAGKIEEHRRKYERARE 243 (377)
T ss_pred HHHHHHHhccccHHHHHH--HHHhccchhhhhhchhHHHHHHH
Confidence 777776666554443333 22223334444444444444443
No 329
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=89.65 E-value=21 Score=34.71 Aligned_cols=46 Identities=13% Similarity=0.185 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh----cCChHHHHHHHHHHHhCC
Q 004362 619 YMAEKLFYEMSEKGCPPDNYTYRIMIDSFCK----TGGINSGYCLLLENIDKG 667 (759)
Q Consensus 619 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g 667 (759)
..|...|.++...+ +......++..|.. ..++.+|..+|.++.+.|
T Consensus 172 ~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 172 KKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQG 221 (292)
T ss_pred HhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC
Confidence 35666777666554 33344444444432 236677777777777754
No 330
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=89.15 E-value=28 Score=35.51 Aligned_cols=180 Identities=15% Similarity=0.148 Sum_probs=112.1
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHhhchhCCCCCCHHhHHHHH
Q 004362 109 PTVLSYNTIMNILVEYGYFSQVHKVYMRMRNKGIVPDVYTFVIRIKSFCRTRRPHVALRLLKNMPSQGFEPNAVAYCTLI 188 (759)
Q Consensus 109 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 188 (759)
.|-.+..+++..+..+..++-+..+..+|...| .+-..+..+++.|... ..+.-..+++++.+..+ .|+..-..|+
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHH
Confidence 344556677788888888888888888888865 5677788888888777 56677777887777652 2333334444
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCC--C---hhhHHHHHHHHHhcCChhHHHHHHHHHhhC-CCCCCHHHHHHHHHHHH
Q 004362 189 AGFYEENHNVEAYELFDEMLGMGISP--D---IATFNKLIHTLCKKGNVRESEKLFNKVLKR-GVSPNLFTFNMFIQGLC 262 (759)
Q Consensus 189 ~~~~~~~~~~~a~~~~~~~~~~~~~~--~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~ 262 (759)
..|- .++.+.+...|.++...=++. + ...|..+.... ..+.+....+...+... |...-...+..+-..|.
T Consensus 140 ~~yE-kik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYE-KIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHH-HhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 4443 477777777777776442221 1 11344433321 34556666666665543 33333344555556677
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHH
Q 004362 263 RKGAISEAISLLDSLGREDLTPDVVTYNTLMCGL 296 (759)
Q Consensus 263 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 296 (759)
...++.+|++++.-+.+.+ ..|..+...++..+
T Consensus 217 ~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~l 249 (711)
T COG1747 217 ENENWTEAIRILKHILEHD-EKDVWARKEIIENL 249 (711)
T ss_pred cccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHH
Confidence 7888888888888877665 55666655555443
No 331
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=89.04 E-value=39 Score=37.02 Aligned_cols=188 Identities=12% Similarity=0.106 Sum_probs=112.7
Q ss_pred hHHHHHHHHHhhhcCCCCCCH--HHHHHHHHHHH-hCCChHHHHHHHHHHHhcCCCCccHH----HHHHHHHHHHhcCCh
Q 004362 20 PLTALEMFNSVKREDGFKHTL--LTYKYMIDKLG-FHGNFEEMENLLLEMRMDVDDSLLEG----VHIGVMRNYGRRGKV 92 (759)
Q Consensus 20 ~~~A~~~~~~~~~~~~~~~~~--~~~~~l~~~l~-~~~~~~~A~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~ 92 (759)
...|+..++.+.+.....|.. .++-.++.+|. ...++++|+..++++..........+ ....+++.+.+.+..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 456778888776543333332 36667888888 78999999999998866552211222 234467777777776
Q ss_pred hHHHHHHHHhhhCCCC--CC--HHHHHHH-HHHHHHcCChhHHHHHHHHHHHCC---CCCCHHHHHHHHHHH--HccCCh
Q 004362 93 QEAVDVFERMDFYNCE--PT--VLSYNTI-MNILVEYGYFSQVHKVYMRMRNKG---IVPDVYTFVIRIKSF--CRTRRP 162 (759)
Q Consensus 93 ~~A~~~~~~~~~~~~~--~~--~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~--~~~~~~ 162 (759)
. |...+++....--. .+ ...+..+ +..+...+++..|.+.++.+.... ..|...++-.++.+. .+.+.+
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~ 195 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSP 195 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCc
Confidence 6 99888876632211 12 2222222 223333479999999998887642 233444444455444 345666
Q ss_pred hhHHHHHhhchhCC---------CCCCHHhHHHHHHHHH--hcCChhHHHHHHHHHH
Q 004362 163 HVALRLLKNMPSQG---------FEPNAVAYCTLIAGFY--EENHNVEAYELFDEML 208 (759)
Q Consensus 163 ~~A~~~~~~~~~~~---------~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~ 208 (759)
+++.+.++.+.... ..|...+|..++..++ ..|++..+.+.++++.
T Consensus 196 ~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 196 DDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred hhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77777776653211 2455677777777654 5677666665555543
No 332
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=88.95 E-value=9.7 Score=30.96 Aligned_cols=73 Identities=4% Similarity=-0.027 Sum_probs=47.9
Q ss_pred chhhHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCC--HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH
Q 004362 601 TTATYNIMINAFSEKL---NFYMAEKLFYEMSEKGCPPD--NYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSLSTI 675 (759)
Q Consensus 601 ~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 675 (759)
+..+-..+++++.+.. +..+.+.+++.+.+.. .|+ ......|.-+|++.|+|+.++++.+..++ ..|++.-.
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~-~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~--~e~~n~Qa 107 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSA-HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE--TEPNNRQA 107 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhc-CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh--hCCCcHHH
Confidence 4455566677776654 3555677777777532 333 45555666678888888888888888888 66765544
Q ss_pred H
Q 004362 676 G 676 (759)
Q Consensus 676 ~ 676 (759)
.
T Consensus 108 ~ 108 (149)
T KOG3364|consen 108 L 108 (149)
T ss_pred H
Confidence 3
No 333
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=88.86 E-value=2.8 Score=31.52 Aligned_cols=48 Identities=13% Similarity=0.119 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHc
Q 004362 548 TEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQ 595 (759)
Q Consensus 548 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 595 (759)
-++.+-++.+...+.-|++.+..+.+++|.+.+|+..|+++++.+..+
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K 71 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK 71 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 345556666666667778888888888888888888888888877766
No 334
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=88.78 E-value=2.9 Score=31.87 Aligned_cols=59 Identities=12% Similarity=0.147 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHH
Q 004362 549 EAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMI 609 (759)
Q Consensus 549 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 609 (759)
+..+-++.+...+.-|++.+..+.+.+|.+.+++..|+++++.+..+.+. ....|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~--~~~~Y~~~l 86 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGN--KKEIYPYIL 86 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--hHHHHHHHH
Confidence 45566666666677888888888888888888888888888888877433 333554444
No 335
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.24 E-value=14 Score=36.29 Aligned_cols=160 Identities=15% Similarity=0.100 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHccCChhhHHHHHHHHHHccC-CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc---------CCCCC
Q 004362 567 VAFGTLINGFCNSGDLDGAYQLFRRMEDQYK-ISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEK---------GCPPD 636 (759)
Q Consensus 567 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~p~ 636 (759)
..+..+..-|..+|+++.|++.|.++.+-+- .......|.+++.+-...|+|.....+..++... .+++-
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 3456677778888888888888877554311 1123455666666666777777777776666543 12333
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHHHhC--C----CCCCHHHHHHHHHHHHhcCcHHHHH-----HHHHHHHHCCCCC
Q 004362 637 NYTYRIMIDSFCKTGGINSGYCLLLENIDK--G----FIPSLSTIGRVINCLCVDHRVHEAV-----GFVHLMVQKGIVP 705 (759)
Q Consensus 637 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--g----~~p~~~~~~~l~~~~~~~g~~~~A~-----~~~~~~~~~~~~p 705 (759)
..++..|...+ .+++..|...|-..... . +.|.+...+..+.++.--++-+--+ ..|+...+ ..|
T Consensus 231 l~C~agLa~L~--lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~fle--l~P 306 (466)
T KOG0686|consen 231 LKCAAGLANLL--LKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLE--LEP 306 (466)
T ss_pred hHHHHHHHHHH--HHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHh--cCh
Confidence 44444444433 34777777776654321 1 2466666666666664333322221 24555555 677
Q ss_pred chHHHHHhccccccccchHHHHHHH
Q 004362 706 EVVNTIFEADKREVASPKIVVEDLL 730 (759)
Q Consensus 706 ~~~~~~~~~~~~~~~~a~~~~~~~~ 730 (759)
+.+.-+.....+++..-..+++++.
T Consensus 307 qlr~il~~fy~sky~~cl~~L~~~k 331 (466)
T KOG0686|consen 307 QLREILFKFYSSKYASCLELLREIK 331 (466)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHhc
Confidence 7666555555555555555555543
No 336
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=88.24 E-value=1.1 Score=27.66 Aligned_cols=28 Identities=14% Similarity=0.258 Sum_probs=19.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004362 638 YTYRIMIDSFCKTGGINSGYCLLLENID 665 (759)
Q Consensus 638 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 665 (759)
.+++.|+..|...|++++|+.+++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4567777777777888888777777764
No 337
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=88.19 E-value=0.8 Score=26.48 Aligned_cols=26 Identities=8% Similarity=0.142 Sum_probs=13.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004362 606 NIMINAFSEKLNFYMAEKLFYEMSEK 631 (759)
Q Consensus 606 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 631 (759)
..++.++...|++++|.+.|+++++.
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34445555555555555555555543
No 338
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=88.08 E-value=28 Score=34.31 Aligned_cols=81 Identities=15% Similarity=0.114 Sum_probs=63.0
Q ss_pred hHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHH---cCChhHHHH
Q 004362 56 FEEMENLLLEMRMDVDDSLLEGVHIGVMRNYGRRGKVQEAVDVFERMDFYNCEPTVLSYNTIMNILVE---YGYFSQVHK 132 (759)
Q Consensus 56 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~ 132 (759)
.+.-+.+++++++.+|. +..++...+..+.+..+.+...+-++++.... +.+...|...+..... .-.+..+..
T Consensus 47 ~E~klsilerAL~~np~--~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~ 123 (321)
T PF08424_consen 47 AERKLSILERALKHNPD--SERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRD 123 (321)
T ss_pred HHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHH
Confidence 45567889999999887 89999999999999999999999999998664 4467788887776554 234567777
Q ss_pred HHHHHHH
Q 004362 133 VYMRMRN 139 (759)
Q Consensus 133 ~~~~~~~ 139 (759)
+|.+.++
T Consensus 124 ~y~~~l~ 130 (321)
T PF08424_consen 124 VYEKCLR 130 (321)
T ss_pred HHHHHHH
Confidence 7777654
No 339
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=87.77 E-value=9.3 Score=34.58 Aligned_cols=120 Identities=11% Similarity=0.010 Sum_probs=78.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChh-cHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChh
Q 004362 505 GLCKAAKSEDVMETFKTMIEKRCVPNII-TYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLD 583 (759)
Q Consensus 505 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 583 (759)
.|.....++.|+..|.+.+.. .|+.. -|..-+..+.+..+++.+..=-.+.++. .+........+..+......++
T Consensus 19 k~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql-~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL-DPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred cccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc-ChHHHHHHHHHHHHHHhhcccc
Confidence 355567789999988888875 56664 4556677778888999988888887774 2333444556667778888999
Q ss_pred hHHHHHHHHHHcc---CCCCchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 004362 584 GAYQLFRRMEDQY---KISHTTATYNIMINAFSEKLNFYMAEKLFYE 627 (759)
Q Consensus 584 ~A~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 627 (759)
+|+..+.++.... ..++-..++..|..+--..-...+..++.++
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 9999999885432 2333445555555443333344444444443
No 340
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=87.73 E-value=3.1 Score=42.56 Aligned_cols=116 Identities=16% Similarity=-0.011 Sum_probs=78.6
Q ss_pred CCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHH
Q 004362 527 CVPNIITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYN 606 (759)
Q Consensus 527 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 606 (759)
..|-..+++..+--....|+...|...+..+..............++..+.+.|...+|..++.+.... ....+.++.
T Consensus 603 ~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~--~~sepl~~~ 680 (886)
T KOG4507|consen 603 NAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAI--NSSEPLTFL 680 (886)
T ss_pred CCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhh--cccCchHHH
Confidence 344444444444334457888888888887765422222334556667777778888888888888777 455667778
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HhhHHHHHHH
Q 004362 607 IMINAFSEKLNFYMAEKLFYEMSEKGCPPD-NYTYRIMIDS 646 (759)
Q Consensus 607 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~ 646 (759)
.++++|....+.+.|++.++++.+. .|+ ..+-+.|...
T Consensus 681 ~~g~~~l~l~~i~~a~~~~~~a~~~--~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 681 SLGNAYLALKNISGALEAFRQALKL--TTKCPECENSLKLI 719 (886)
T ss_pred hcchhHHHHhhhHHHHHHHHHHHhc--CCCChhhHHHHHHH
Confidence 8888888888899999998888865 444 6666666653
No 341
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.54 E-value=46 Score=36.07 Aligned_cols=73 Identities=14% Similarity=0.065 Sum_probs=37.5
Q ss_pred HHhCCChHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCC
Q 004362 50 LGFHGNFEEMENLLLEMRMDVDDSLLEGVHIGVMRNYGRRGKVQEAVDVFERMDFYNCEPTVLSYNTIMNILVEYGY 126 (759)
Q Consensus 50 l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 126 (759)
+.+.+.+++|+...+......+......+....+..+...|++++|-...-.|. ..+...|..-+..+...++
T Consensus 366 ll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~----gn~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 366 LLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKML----GNNAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHh----cchHHHHHHHHHHhccccc
Confidence 345556666665555444333221123445555555666666666666665555 3444455555544444443
No 342
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.94 E-value=3.1 Score=38.99 Aligned_cols=103 Identities=15% Similarity=0.190 Sum_probs=65.2
Q ss_pred CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC---CCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHH
Q 004362 176 GFEPNAVAYCTLIAGFYEENHNVEAYELFDEMLGMG---ISPDIATFNKLIHTLCKKGNVRESEKLFNKVLKRGVSPNLF 252 (759)
Q Consensus 176 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 252 (759)
|.+.+..+...++..-....+++.+...+-++.... ..|+. +-...++.+. .-+..+++.++..=+..|+.||.+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 334445555555555555667777777776665431 11111 1122233332 235667887777777888888888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 004362 253 TFNMFIQGLCRKGAISEAISLLDSLGRE 280 (759)
Q Consensus 253 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 280 (759)
+++.+|..+.+.+++.+|.++.-.|...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 8888888888888888888887776644
No 343
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.89 E-value=1.5 Score=27.16 Aligned_cols=28 Identities=25% Similarity=0.265 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004362 603 ATYNIMINAFSEKLNFYMAEKLFYEMSE 630 (759)
Q Consensus 603 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 630 (759)
.+++.++.+|...|++++|..+++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4678888888888999999988888764
No 344
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=86.78 E-value=27 Score=33.04 Aligned_cols=165 Identities=12% Similarity=0.058 Sum_probs=103.7
Q ss_pred HHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhc--CCCCccHHHHHHHHHHHHh--cCChhHHH
Q 004362 21 LTALEMFNSVKREDGFKHTLLTYKYMIDKLGFHGNFEEMENLLLEMRMD--VDDSLLEGVHIGVMRNYGR--RGKVQEAV 96 (759)
Q Consensus 21 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~--~g~~~~A~ 96 (759)
++-+.+++-+........+.. |..++ .++.-..+|..+|+..-.. --. ++++...+++.... +.+...--
T Consensus 113 ~Dli~FL~~~i~~~~~~k~~~-Y~~LV---k~N~~Vv~aL~L~~~~~~~~~Ii~--d~evislLL~sMv~~~~~~l~alY 186 (292)
T PF13929_consen 113 EDLISFLKLVIINLSSNKSFN-YWDLV---KRNKIVVEALKLYDGLNPDESIIF--DEEVISLLLKSMVIDENTKLNALY 186 (292)
T ss_pred HHHHHHHHHHHhccccccchH-HHHHH---HhhHHHHHHHHHhhccCcccceee--ChHHHHHHHHHHHhccccchhhHH
Confidence 444555555443322222222 55555 3445567777887743221 122 56677777776654 22333334
Q ss_pred HHHHHhh-hCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHccCChhhHHHHHhh---
Q 004362 97 DVFERMD-FYNCEPTVLSYNTIMNILVEYGYFSQVHKVYMRMRNK-GIVPDVYTFVIRIKSFCRTRRPHVALRLLKN--- 171 (759)
Q Consensus 97 ~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~--- 171 (759)
++.+-+. ..+..++..+...++..+++.+++....++++..... +...|...|..+|+.....|+..-...+.++
T Consensus 187 EvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhL 266 (292)
T PF13929_consen 187 EVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHL 266 (292)
T ss_pred HHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCe
Confidence 4444443 2233577777888899999999999999999998776 4456788899999999999999988888865
Q ss_pred --chhCCCCCCHHhHHHHHHHH
Q 004362 172 --MPSQGFEPNAVAYCTLIAGF 191 (759)
Q Consensus 172 --~~~~~~~~~~~~~~~l~~~~ 191 (759)
+.+.+++.+...-..+-..+
T Consensus 267 LwikR~~V~v~~~L~~~L~~LF 288 (292)
T PF13929_consen 267 LWIKRNNVDVTDELRSQLSELF 288 (292)
T ss_pred EEeeecCCcCCHHHHHHHHHHH
Confidence 33445555555555554444
No 345
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=86.70 E-value=1 Score=25.98 Aligned_cols=25 Identities=12% Similarity=0.157 Sum_probs=15.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHh
Q 004362 641 RIMIDSFCKTGGINSGYCLLLENID 665 (759)
Q Consensus 641 ~~l~~~~~~~g~~~~A~~~~~~~~~ 665 (759)
..++.++.+.|++++|...|+++++
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3455566666666666666666665
No 346
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=86.64 E-value=35 Score=33.69 Aligned_cols=122 Identities=11% Similarity=0.035 Sum_probs=67.3
Q ss_pred hhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh---cCChHHHHH
Q 004362 582 LDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCK---TGGINSGYC 658 (759)
Q Consensus 582 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~ 658 (759)
.+.-+.+++++.+. .|.+...+..++..+.+..+.++..+.+++++... +-+...|...+..... .-.++....
T Consensus 47 ~E~klsilerAL~~--np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~ 123 (321)
T PF08424_consen 47 AERKLSILERALKH--NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRD 123 (321)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHH
Confidence 34455566666665 56666666666666666666666666666666542 2235566665553332 223555555
Q ss_pred HHHHHHhC------CC------CC--CHHHHHHHHHHH---HhcCcHHHHHHHHHHHHHCCC-CCc
Q 004362 659 LLLENIDK------GF------IP--SLSTIGRVINCL---CVDHRVHEAVGFVHLMVQKGI-VPE 706 (759)
Q Consensus 659 ~~~~~~~~------g~------~p--~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~~-~p~ 706 (759)
.|.+.++. |. .| +....+.++..+ ..+|..+.|+..++.+.+-++ .|+
T Consensus 124 ~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~P~ 189 (321)
T PF08424_consen 124 VYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFFRPE 189 (321)
T ss_pred HHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcCCcc
Confidence 55554421 11 01 111222233222 477888888888888887655 444
No 347
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=86.31 E-value=15 Score=32.75 Aligned_cols=121 Identities=15% Similarity=0.158 Sum_probs=70.6
Q ss_pred HHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HhhHHHHHHH
Q 004362 571 TLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPD----NYTYRIMIDS 646 (759)
Q Consensus 571 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~ 646 (759)
..+..+.+.+.+.+|+...+.-.+. .|.+...-..++..|+-.|+|++|..-++-+-+. .|+ ..+|..++.+
T Consensus 6 ~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l--~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 6 DTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATL--SPQDTVGASLYRHLIRC 81 (273)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhhc--CcccchHHHHHHHHHHH
Confidence 3445566677777887777777666 6777777777778888888888887777766532 343 4566666654
Q ss_pred HHhcCChHHHHHHHHHHHhCCCC------CCHHHHHHHHHHH-HhcCcHHH-HHHHHHHHHHCCCCC
Q 004362 647 FCKTGGINSGYCLLLENIDKGFI------PSLSTIGRVINCL-CVDHRVHE-AVGFVHLMVQKGIVP 705 (759)
Q Consensus 647 ~~~~g~~~~A~~~~~~~~~~g~~------p~~~~~~~l~~~~-~~~g~~~~-A~~~~~~~~~~~~~p 705 (759)
-... ++..+-+.. |...-...++.++ ++.+...+ +..+.+...+.+..|
T Consensus 82 ea~R----------~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~ 138 (273)
T COG4455 82 EAAR----------NEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVP 138 (273)
T ss_pred HHHH----------HHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCC
Confidence 2221 112221222 3333334556666 55554555 455666666654433
No 348
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=85.92 E-value=17 Score=33.15 Aligned_cols=66 Identities=11% Similarity=0.013 Sum_probs=41.7
Q ss_pred hhHHHHHHHHHhcCC-------HHHHHHHHHHHHHcCCCC----C-HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 004362 603 ATYNIMINAFSEKLN-------FYMAEKLFYEMSEKGCPP----D-NYTYRIMIDSFCKTGGINSGYCLLLENIDKGF 668 (759)
Q Consensus 603 ~~~~~l~~~~~~~g~-------~~~A~~~~~~~~~~~~~p----~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 668 (759)
.++..+++.|...|+ +..|.+.|.++.+..-.| + ......++....+.|++++|.++|.+++..+-
T Consensus 119 ~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 119 GLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 444556666666666 344555555555442221 1 33445566788889999999999999987533
No 349
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=85.87 E-value=2.1 Score=24.96 Aligned_cols=29 Identities=14% Similarity=0.124 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004362 603 ATYNIMINAFSEKLNFYMAEKLFYEMSEK 631 (759)
Q Consensus 603 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 631 (759)
.+|..++.+|...|++++|.+.|++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 36778888899999999999999888754
No 350
>PRK09687 putative lyase; Provisional
Probab=85.33 E-value=36 Score=32.69 Aligned_cols=80 Identities=14% Similarity=-0.006 Sum_probs=31.7
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004362 355 DEFTYCSLINGLCQDGDVDRAMAVYVKALEKGLKPSIVLYNTLIKGLSQQG-LILQALQLMNEMSESGCCPDMWTYNIVI 433 (759)
Q Consensus 355 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 433 (759)
+..+....+.++.+.++ +.+...+-.+... ++...-...+.++.+.+ ....+...+..+.. .++...-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence 33444444445544444 2344444444332 23333333333333321 12234444444432 12444444444
Q ss_pred HHHHhcCC
Q 004362 434 NGLCKMGC 441 (759)
Q Consensus 434 ~~~~~~~~ 441 (759)
.++.+.++
T Consensus 214 ~aLg~~~~ 221 (280)
T PRK09687 214 IGLALRKD 221 (280)
T ss_pred HHHHccCC
Confidence 44444444
No 351
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=85.31 E-value=46 Score=33.87 Aligned_cols=275 Identities=12% Similarity=-0.010 Sum_probs=143.8
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhCCChHHH--HHHHHHHHHCCCCCCh-----------hcHHHHHH
Q 004362 263 RKGAISEAISLLDSLGREDLTPDVVTYNTLMCGLCKNSKVVEA--EYYLHKMVNEGLEPDG-----------FSYNAVID 329 (759)
Q Consensus 263 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a--~~~~~~~~~~~~~~~~-----------~~~~~ll~ 329 (759)
..+.++..++.+..+...|.....+.++.-...|.+.|..... ++-++.+...-..|+. ..+....-
T Consensus 29 ~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~~~ll~el~aL~~~~~~~~~~~~gld~~~~t~~~yn~aV 108 (696)
T KOG2471|consen 29 NNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQHSVLLKELEALTADADAPGDVSSGLSLKQGTVMDYNFAV 108 (696)
T ss_pred CCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchhHHHHHHHHHHHHhhccccchhcchhhhcchHHhhhhhe
Confidence 4678999999999999888777777788888888888876543 2333333322111111 11111222
Q ss_pred HHHHcCChhHHHHHHHHHHhCCCCCCcc-----cHHHHHHHHHhcCCHHHHHHHHHH---HHHcC-CCC--CHHhHHH--
Q 004362 330 GYCKAGMISSADKILNDAIFKGFVPDEF-----TYCSLINGLCQDGDVDRAMAVYVK---ALEKG-LKP--SIVLYNT-- 396 (759)
Q Consensus 330 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~A~~~~~~---~~~~~-~~~--~~~~~~~-- 396 (759)
.|....++..|+++.......- .+-.. ........+....+.++|+.++.- +...+ ..+ +...-+.
T Consensus 109 i~yh~~~~g~a~~~~~~lv~r~-e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~~gn~~~~nn~~ 187 (696)
T KOG2471|consen 109 IFYHHEENGSAMQLSSNLVSRT-ESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKLVGNHIPANNLL 187 (696)
T ss_pred eeeeHhhcchHHHhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhc
Confidence 2333445566666655544331 11000 111223345555667777665543 33221 000 0011111
Q ss_pred ------------------------HHHHHHhcCCHHHHHHHHHHHH-hCCCCCCHHHHH-HHHHHHHhcCChHHHHHHHH
Q 004362 397 ------------------------LIKGLSQQGLILQALQLMNEMS-ESGCCPDMWTYN-IVINGLCKMGCVSDANNLVN 450 (759)
Q Consensus 397 ------------------------l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~ 450 (759)
-+++|.+..+...+.+-.+... ..+ |...+. .--..+...|++.+|.+++-
T Consensus 188 kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~---~s~~~l~LKsq~eY~~gn~~kA~KlL~ 264 (696)
T KOG2471|consen 188 KTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQ---DSSMALLLKSQLEYAHGNHPKAMKLLL 264 (696)
T ss_pred ccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcC---CCcHHHHHHHHHHHHhcchHHHHHHHH
Confidence 1122222222222222222211 111 211111 11223445788888887765
Q ss_pred HHHH---CCCCCC-----HhhHHHHHHHHHhcCCHHHHHHHHHHHHH-------CCCCCCH-----------HHHHHHHH
Q 004362 451 DAIS---KGYIPD-----IFTFNTLIDGYCKQLKMEIAIEILNTMWS-------HGVTPDV-----------ITYNSLLN 504 (759)
Q Consensus 451 ~~~~---~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~~~~~~~-----------~~~~~l~~ 504 (759)
..-- .|...+ ...||.+.-.+.+.|.+..+..+|.+..+ .|+.|.. .+|| ...
T Consensus 265 ~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYN-cG~ 343 (696)
T KOG2471|consen 265 VSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYN-CGL 343 (696)
T ss_pred hcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHh-hhH
Confidence 4321 121112 22346666667788888888888888774 3444321 2233 344
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHh
Q 004362 505 GLCKAAKSEDVMETFKTMIEKRCVPNIITYSILGESLCK 543 (759)
Q Consensus 505 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 543 (759)
.|...|++-.|.+.|.+..+. +..++..|..+..+|..
T Consensus 344 ~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 344 LYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred HHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 577889999999999988876 45688899999988853
No 352
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=85.04 E-value=39 Score=32.76 Aligned_cols=23 Identities=17% Similarity=0.384 Sum_probs=12.8
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHH
Q 004362 409 QALQLMNEMSESGCCPDMWTYNI 431 (759)
Q Consensus 409 ~a~~~~~~~~~~~~~~~~~~~~~ 431 (759)
+.+.+++.+.+.|+.-+..++.+
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~la 102 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLA 102 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHH
Confidence 34455566666666655555444
No 353
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=84.80 E-value=40 Score=32.75 Aligned_cols=129 Identities=12% Similarity=0.099 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHcCCCCChhcHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHcc-----C--
Q 004362 512 SEDVMETFKTMIEKRCVPNIITYSILGESLCK----AHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNS-----G-- 580 (759)
Q Consensus 512 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g-- 580 (759)
..+|.++|....+.| .......++..|.. ..+..+|..+++.+.+.|..+.......+...|..- -
T Consensus 93 ~~~A~~~~~~~a~~g---~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~ 169 (292)
T COG0790 93 KTKAADWYRCAAADG---LAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAY 169 (292)
T ss_pred HHHHHHHHHHHhhcc---cHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccH
Confidence 455555555444443 22233334444433 235666667777666665443222233333333332 1
Q ss_pred ChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC
Q 004362 581 DLDGAYQLFRRMEDQYKISHTTATYNIMINAFSE----KLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTG 651 (759)
Q Consensus 581 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 651 (759)
+...|...|.++.... ++.....++..|.. ..+..+|..+|++..+.|- ......+. .+...|
T Consensus 170 ~~~~A~~~~~~aa~~~----~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g 236 (292)
T COG0790 170 DDKKALYLYRKAAELG----NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNG 236 (292)
T ss_pred HHHhHHHHHHHHHHhc----CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcC
Confidence 2346888888877663 55666667766654 3478888888888887763 33333343 445444
No 354
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=84.67 E-value=1.8 Score=24.36 Aligned_cols=26 Identities=8% Similarity=0.156 Sum_probs=13.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh
Q 004362 640 YRIMIDSFCKTGGINSGYCLLLENID 665 (759)
Q Consensus 640 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 665 (759)
|..++..+...|++++|...++++++
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 34444455555555555555555544
No 355
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.40 E-value=22 Score=37.09 Aligned_cols=150 Identities=10% Similarity=0.096 Sum_probs=93.0
Q ss_pred hCCChHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCChhHHH
Q 004362 52 FHGNFEEMENLLLEMRMDVDDSLLEGVHIGVMRNYGRRGKVQEAVDVFERMDFYNCEPTVLSYNTIMNILVEYGYFSQVH 131 (759)
Q Consensus 52 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 131 (759)
..|+++.|..++-.+ ..+....++.-+-++|-.++|+++-. .|+. -.....+.|+++.|.
T Consensus 598 mrrd~~~a~~vLp~I--------~k~~rt~va~Fle~~g~~e~AL~~s~-------D~d~-----rFelal~lgrl~iA~ 657 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTI--------PKEIRTKVAHFLESQGMKEQALELST-------DPDQ-----RFELALKLGRLDIAF 657 (794)
T ss_pred hhccccccccccccC--------chhhhhhHHhHhhhccchHhhhhcCC-------Chhh-----hhhhhhhcCcHHHHH
Confidence 446666665533222 23455566777777777777766531 1221 123445777888877
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHhhchhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 004362 132 KVYMRMRNKGIVPDVYTFVIRIKSFCRTRRPHVALRLLKNMPSQGFEPNAVAYCTLIAGFYEENHNVEAYELFDEMLGMG 211 (759)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 211 (759)
++..+. .+..-|..|..+....+++..|.+.|..... |..|+-.+...|+.+....+-....+.|
T Consensus 658 ~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g 722 (794)
T KOG0276|consen 658 DLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG 722 (794)
T ss_pred HHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc
Confidence 765553 3456688888888888888888888876543 4456666667777766666666665555
Q ss_pred CCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 004362 212 ISPDIATFNKLIHTLCKKGNVRESEKLFNKV 242 (759)
Q Consensus 212 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 242 (759)
.. |...-++...|+++++.+++..-
T Consensus 723 ~~------N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 723 KN------NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred cc------chHHHHHHHcCCHHHHHHHHHhc
Confidence 32 23334566778888887777553
No 356
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=84.40 E-value=37 Score=31.99 Aligned_cols=59 Identities=14% Similarity=0.149 Sum_probs=39.7
Q ss_pred HHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004362 569 FGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMS 629 (759)
Q Consensus 569 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 629 (759)
+......|..+|.+.+|.++.++.... .|-+...|..++..+...|+--.|.+.|+++.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltl--dpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTL--DPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhc--ChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 344456677777777777777777766 66666667777777777777666666666554
No 357
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=84.36 E-value=36 Score=31.83 Aligned_cols=181 Identities=13% Similarity=0.132 Sum_probs=88.7
Q ss_pred HHHHHHHHccCChhhHHHHHHHHHHccCC----CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCCHhhHH
Q 004362 570 GTLINGFCNSGDLDGAYQLFRRMEDQYKI----SHTTATYNIMINAFSEKLNFYMAEKLFYEMSE----KGCPPDNYTYR 641 (759)
Q Consensus 570 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~~~~~~ 641 (759)
..++.++.+.|.+.+|+.+...+...... +.-...+..=..+|....+..++..-+..+.. .-+||....-.
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~l 208 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQL 208 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHH
Confidence 35677888899999998887766543322 22222333334455555555554444333321 13455544433
Q ss_pred HHHH--HHHhcCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHH---HHhcCcHHHHHHHHHHHHH-CCCCCc---hHHH
Q 004362 642 IMID--SFCKTGGINSGYCLLLENIDK--GFIPSLSTIGRVINC---LCVDHRVHEAVGFVHLMVQ-KGIVPE---VVNT 710 (759)
Q Consensus 642 ~l~~--~~~~~g~~~~A~~~~~~~~~~--g~~p~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~-~~~~p~---~~~~ 710 (759)
-|.. ..+...++..|..+|-++.+- .+..+......+--. -...++.++.-.+++.=.. +..... ....
T Consensus 209 DL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc~sLkYmlLSkIMlN~~~evk~vl~~K~t~~~y~~r~I~am~a 288 (421)
T COG5159 209 DLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKACVSLKYMLLSKIMLNRREEVKAVLRNKNTLKHYDDRMIRAMLA 288 (421)
T ss_pred HHhccceeeccccchhHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhHHHHHHHHccchhHhhhhhhhHHHHHH
Confidence 3443 345667899999999998872 122333322222111 1345666655544432111 011111 1122
Q ss_pred HHhc-c---ccccccchHHHHHHHhcCCCchHHHHHHHhhhhhh
Q 004362 711 IFEA-D---KREVASPKIVVEDLLKKSHITYYAYELLFDGIRDK 750 (759)
Q Consensus 711 ~~~~-~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 750 (759)
..++ . .-+++.|..-|+.=+..++...+.++.|++.+-++
T Consensus 289 vaea~~NRsL~df~~aL~qY~~el~~D~~iRsHl~~LYD~LLe~ 332 (421)
T COG5159 289 VAEAFGNRSLKDFSDALAQYSDELHQDSFIRSHLQYLYDVLLEK 332 (421)
T ss_pred HHHHhCCCcHhhHHHHHHHhhHHhccCHHHHHHHHHHHHHHHHh
Confidence 2222 1 22344555555554445555555566666655443
No 358
>PRK11619 lytic murein transglycosylase; Provisional
Probab=83.69 E-value=74 Score=34.95 Aligned_cols=143 Identities=10% Similarity=0.010 Sum_probs=73.0
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 004362 42 TYKYMIDKLGFHGNFEEMENLLLEMRMDVDDSLLEGVHIGVMRNYGRRGKVQEAVDVFERMDFYNCEPTVLSYNTIMNIL 121 (759)
Q Consensus 42 ~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 121 (759)
.|..... ..+.|++.++..+...+. ..| +..-+-...+..-.....+++...++++.... +.....-...+..+
T Consensus 36 ~f~~A~~-a~~~g~~~~~~~~~~~l~-d~p--L~~yl~y~~L~~~l~~~~~~ev~~Fl~~~~~~--P~~~~Lr~~~l~~L 109 (644)
T PRK11619 36 RYQQIKQ-AWDNRQMDVVEQLMPTLK-DYP--LYPYLEYRQLTQDLMNQPAVQVTNFIRANPTL--PPARSLQSRFVNEL 109 (644)
T ss_pred HHHHHHH-HHHCCCHHHHHHHHHhcc-CCC--cHhHHHHHHHHhccccCCHHHHHHHHHHCCCC--chHHHHHHHHHHHH
Confidence 3444443 347778888766665542 111 12222222222223344566666666655421 22222223344555
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHhhchhCCCCCCHHhHHHHHHHHHhcCC
Q 004362 122 VEYGYFSQVHKVYMRMRNKGIVPDVYTFVIRIKSFCRTRRPHVALRLLKNMPSQGFEPNAVAYCTLIAGFYEENH 196 (759)
Q Consensus 122 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 196 (759)
.+.+++......+.. .+.+.........+....|+.++|......+-..+ ...+..++.++..+.+.|.
T Consensus 110 a~~~~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g~ 178 (644)
T PRK11619 110 ARREDWRGLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSGK 178 (644)
T ss_pred HHccCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcCC
Confidence 667777766653211 13455555666777777888777766666654444 3345556666655554443
No 359
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=83.59 E-value=70 Score=34.56 Aligned_cols=199 Identities=13% Similarity=0.162 Sum_probs=107.3
Q ss_pred HHHHHHHHHHCCCCCC---HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH----------HHHHHHHHHhcCC
Q 004362 445 ANNLVNDAISKGYIPD---IFTFNTLIDGYCKQLKMEIAIEILNTMWSHGVTPDVIT----------YNSLLNGLCKAAK 511 (759)
Q Consensus 445 a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----------~~~l~~~~~~~~~ 511 (759)
-...+.+|..+--.|+ ..+...++-.|....+++..+++.+.+... ||..- |...++--.+-|+
T Consensus 182 l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GD 258 (1226)
T KOG4279|consen 182 LNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGD 258 (1226)
T ss_pred HHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCcc
Confidence 3345566665432333 445566666777788888888888888764 43211 1111111123467
Q ss_pred HHHHHHHHHHHHHcC--CCCChhcHHHHHHH---------HHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccC
Q 004362 512 SEDVMETFKTMIEKR--CVPNIITYSILGES---------LCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSG 580 (759)
Q Consensus 512 ~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~---------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 580 (759)
-++|+...-.+++.. +.||. |...+.. |...+..+.|..+|++..+ +.|...+=..+...+...|
T Consensus 259 RakAL~~~l~lve~eg~vapDm--~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG 334 (1226)
T KOG4279|consen 259 RAKALNTVLPLVEKEGPVAPDM--YCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAG 334 (1226)
T ss_pred HHHHHHHHHHHHHhcCCCCCce--eeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhh
Confidence 778887777776652 33443 3222222 2334556677778877765 3444433233333333333
Q ss_pred C-hhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHH
Q 004362 581 D-LDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCL 659 (759)
Q Consensus 581 ~-~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 659 (759)
. ++...++=.-. ..+...+.+.|.++.-.++|+-. + .+.+-.-.+++.+|+..
T Consensus 335 ~~Fens~Elq~Ig-------------mkLn~LlgrKG~leklq~YWdV~----------~---y~~asVLAnd~~kaiqA 388 (1226)
T KOG4279|consen 335 EHFENSLELQQIG-------------MKLNSLLGRKGALEKLQEYWDVA----------T---YFEASVLANDYQKAIQA 388 (1226)
T ss_pred hhccchHHHHHHH-------------HHHHHHhhccchHHHHHHHHhHH----------H---hhhhhhhccCHHHHHHH
Confidence 3 33332221111 22344566777776666655432 1 23344567899999999
Q ss_pred HHHHHhCCCCCCHHHHHHH
Q 004362 660 LLENIDKGFIPSLSTIGRV 678 (759)
Q Consensus 660 ~~~~~~~g~~p~~~~~~~l 678 (759)
.+.|.+ +.|-....-..
T Consensus 389 ae~mfK--Lk~P~WYLkS~ 405 (1226)
T KOG4279|consen 389 AEMMFK--LKPPVWYLKST 405 (1226)
T ss_pred HHHHhc--cCCceehHHHH
Confidence 999988 77654433333
No 360
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=83.59 E-value=35 Score=31.19 Aligned_cols=67 Identities=13% Similarity=0.087 Sum_probs=52.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 004362 603 ATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSL 672 (759)
Q Consensus 603 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 672 (759)
..+.++..++...|++-++++.-.+.+... +-+...|..-+.+....-+.++|..=|.+.++ +.|..
T Consensus 231 pLllNy~QC~L~~~e~yevleh~seiL~~~-~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~--ldpsl 297 (329)
T KOG0545|consen 231 PLLLNYCQCLLKKEEYYEVLEHCSEILRHH-PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE--LDPSL 297 (329)
T ss_pred HHHHhHHHHHhhHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh--cChhh
Confidence 456677788888899999999988888662 34477777777788888888889888888888 77763
No 361
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=83.54 E-value=52 Score=33.04 Aligned_cols=65 Identities=8% Similarity=0.011 Sum_probs=38.4
Q ss_pred CchhhHHHH---HHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHH-HhcCChHHHHHHHHHHH
Q 004362 600 HTTATYNIM---INAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSF-CKTGGINSGYCLLLENI 664 (759)
Q Consensus 600 ~~~~~~~~l---~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~ 664 (759)
.|...|.++ +..+.+.|.+..|.++.+-+...+..-|+......++.| .+.++++--+.+++...
T Consensus 98 eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 98 ENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred cchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 344444443 456667777888887777777554222555555566544 45566666666666543
No 362
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=83.45 E-value=2.1 Score=26.97 Aligned_cols=23 Identities=22% Similarity=0.395 Sum_probs=11.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh
Q 004362 643 MIDSFCKTGGINSGYCLLLENID 665 (759)
Q Consensus 643 l~~~~~~~g~~~~A~~~~~~~~~ 665 (759)
|..+|...|+.+.|..++++.+.
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 44455555555555555555554
No 363
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=83.42 E-value=11 Score=28.64 Aligned_cols=62 Identities=6% Similarity=-0.015 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004362 618 FYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSLSTIGRVIN 680 (759)
Q Consensus 618 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 680 (759)
.=++.+-++.+....+-|++.+..+.+.+|.+.+|+..|+++++-...+ ...+...|..++.
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lq 84 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHH
Confidence 3345566666666688899999999999999999999999999977632 2223444544443
No 364
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=82.78 E-value=6.8 Score=40.28 Aligned_cols=85 Identities=11% Similarity=-0.017 Sum_probs=36.3
Q ss_pred CCChHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 004362 53 HGNFEEMENLLLEMRMDVDDSLLEGVHIGVMRNYGRRGKVQEAVDVFERMDFYNCEPTVLSYNTIMNILVEYGYFSQVHK 132 (759)
Q Consensus 53 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 132 (759)
.|+...|.+.++.+....|.. .......++....+.|...+|-.++.+..... -..+.++..+++++.-..+.+.|++
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~-~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQ-QDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred cCCcHHHHHHHHHHhccChhh-hcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHH
Confidence 344555555555444443321 11122334444444444444544444433222 1223334444455555555555555
Q ss_pred HHHHHHH
Q 004362 133 VYMRMRN 139 (759)
Q Consensus 133 ~~~~~~~ 139 (759)
.|.+..+
T Consensus 698 ~~~~a~~ 704 (886)
T KOG4507|consen 698 AFRQALK 704 (886)
T ss_pred HHHHHHh
Confidence 5555444
No 365
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=82.58 E-value=2.1 Score=23.21 Aligned_cols=19 Identities=21% Similarity=0.163 Sum_probs=8.3
Q ss_pred HHHHHHHhcCCHHHHHHHH
Q 004362 607 IMINAFSEKLNFYMAEKLF 625 (759)
Q Consensus 607 ~l~~~~~~~g~~~~A~~~~ 625 (759)
.++.++...|++++|..++
T Consensus 6 ~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHcCCHHHHHHHH
Confidence 3444444444444444443
No 366
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=82.57 E-value=68 Score=34.83 Aligned_cols=57 Identities=12% Similarity=0.086 Sum_probs=17.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHH
Q 004362 324 YNAVIDGYCKAGMISSADKILNDAIFKGFVPDEFTYCSLINGLCQDGDVDRAMAVYVKA 382 (759)
Q Consensus 324 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 382 (759)
..-++..|.+.|-.+.+.++.+.+-..-. ...-|..-+..+.+.|+......+-..+
T Consensus 408 ~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~l 464 (566)
T PF07575_consen 408 AEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRL 464 (566)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34444555555555555555444332211 1122334444444555544444443333
No 367
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=82.33 E-value=20 Score=27.55 Aligned_cols=47 Identities=13% Similarity=0.192 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004362 514 DVMETFKTMIEKRCVPNIITYSILGESLCKAHKITEAFNLLEEMENK 560 (759)
Q Consensus 514 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 560 (759)
+..+-++.+...++.|++......+.+|.+.+++..|.++++-+..+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44455556655667777777777777777777777777777777654
No 368
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=82.08 E-value=11 Score=33.33 Aligned_cols=72 Identities=14% Similarity=0.100 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCC--CCchhhHHHHHHHHHhcCCHHHH
Q 004362 549 EAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKI--SHTTATYNIMINAFSEKLNFYMA 621 (759)
Q Consensus 549 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A 621 (759)
.|.+.|-.+...+.-.++.....++..|. ..+.++++.++-++.+.... ..++..+..|+..+...|+++.|
T Consensus 124 ~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 124 EALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 34444444433332233333333333332 34444444444444433211 22344444444444444444444
No 369
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=81.85 E-value=27 Score=28.57 Aligned_cols=70 Identities=7% Similarity=0.096 Sum_probs=54.5
Q ss_pred CCCHhhHHHHHHHHHhcCC---hHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCc
Q 004362 634 PPDNYTYRIMIDSFCKTGG---INSGYCLLLENIDKGFIP--SLSTIGRVINCLCVDHRVHEAVGFVHLMVQKGIVPE 706 (759)
Q Consensus 634 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 706 (759)
.+...+-..+.+++.++.+ ..+.+.+++...+. -.| .....+.+.-.+++.++++++.++.+.+.+ ..|+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~-~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~--~e~~ 103 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS-AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE--TEPN 103 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh-cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh--hCCC
Confidence 5667778889999988765 66788999999862 334 345566777778999999999999999998 4555
No 370
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=81.47 E-value=22 Score=31.55 Aligned_cols=72 Identities=14% Similarity=0.029 Sum_probs=37.8
Q ss_pred hHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhC---CCCCCHHHHHHHHHHHHhcCCHHHH
Q 004362 198 VEAYELFDEMLGMGISPDIATFNKLIHTLCKKGNVRESEKLFNKVLKR---GVSPNLFTFNMFIQGLCRKGAISEA 270 (759)
Q Consensus 198 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a 270 (759)
+.|...|-++...+.--++.....|.. |....|.+++..++..+++. +-.+|+..+.+|+..+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAt-yY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALAT-YYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHH-HHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 455566666555443333333333333 33345666666666655543 2244566666666666666666554
No 371
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.63 E-value=48 Score=30.69 Aligned_cols=93 Identities=9% Similarity=0.060 Sum_probs=46.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCC----C-------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCh
Q 004362 464 FNTLIDGYCKQLKMEIAIEILNTMWSHGV----T-------PDVITYNSLLNGLCKAAKSEDVMETFKTMIEKR-CVPNI 531 (759)
Q Consensus 464 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~-------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~ 531 (759)
-+.|...|...+.+....++++++.+.-. . .-...|..-+..|..+.+-.....+|++.+... -.|.+
T Consensus 148 NtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHP 227 (440)
T KOG1464|consen 148 NTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHP 227 (440)
T ss_pred cchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCch
Confidence 34556666666666666666666543210 0 012345555566666666666666666655432 12332
Q ss_pred hcHHHHHHHH-----HhcCCHHHHHHHHHHH
Q 004362 532 ITYSILGESL-----CKAHKITEAFNLLEEM 557 (759)
Q Consensus 532 ~~~~~l~~~~-----~~~~~~~~a~~~~~~~ 557 (759)
. ....++-| .+.|++++|..-|=++
T Consensus 228 l-ImGvIRECGGKMHlreg~fe~AhTDFFEA 257 (440)
T KOG1464|consen 228 L-IMGVIRECGGKMHLREGEFEKAHTDFFEA 257 (440)
T ss_pred H-HHhHHHHcCCccccccchHHHHHhHHHHH
Confidence 2 22333333 3456676665443333
No 372
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=79.81 E-value=43 Score=32.24 Aligned_cols=94 Identities=21% Similarity=0.196 Sum_probs=69.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC--HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH-HHHHH
Q 004362 605 YNIMINAFSEKLNFYMAEKLFYEMSEKGC-PPD--NYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSLSTI-GRVIN 680 (759)
Q Consensus 605 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~-~~l~~ 680 (759)
|..=++-|.+.+++..|...|.+-++... .|| .+.|+.-..+....|++..|+.=..+++. +.|+.... +.-..
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~--~~P~h~Ka~~R~Ak 161 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALK--LKPTHLKAYIRGAK 161 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh--cCcchhhhhhhhhH
Confidence 34445667788888888888888665432 333 56777777788888999999999999888 88875544 34445
Q ss_pred HHHhcCcHHHHHHHHHHHHH
Q 004362 681 CLCVDHRVHEAVGFVHLMVQ 700 (759)
Q Consensus 681 ~~~~~g~~~~A~~~~~~~~~ 700 (759)
++....++++|..+.+...+
T Consensus 162 c~~eLe~~~~a~nw~ee~~~ 181 (390)
T KOG0551|consen 162 CLLELERFAEAVNWCEEGLQ 181 (390)
T ss_pred HHHHHHHHHHHHHHHhhhhh
Confidence 55788888888888888754
No 373
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=78.71 E-value=43 Score=28.96 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=9.8
Q ss_pred hCCCCCChhhHHHHHHHHHhcCC
Q 004362 209 GMGISPDIATFNKLIHTLCKKGN 231 (759)
Q Consensus 209 ~~~~~~~~~~~~~l~~~~~~~g~ 231 (759)
+.+++|+...+..++..+.+.|.
T Consensus 22 ~~~i~~~~~L~~lli~lLi~~~~ 44 (167)
T PF07035_consen 22 QHNIPVQHELYELLIDLLIRNGQ 44 (167)
T ss_pred HcCCCCCHHHHHHHHHHHHHcCC
Confidence 33444444444444444444443
No 374
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=78.62 E-value=3.3 Score=22.46 Aligned_cols=19 Identities=21% Similarity=0.288 Sum_probs=8.4
Q ss_pred HHHHHHHhcCChhHHHHHH
Q 004362 81 GVMRNYGRRGKVQEAVDVF 99 (759)
Q Consensus 81 ~l~~~~~~~g~~~~A~~~~ 99 (759)
.++..+...|++++|...+
T Consensus 6 ~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHcCCHHHHHHHH
Confidence 3444444444444444443
No 375
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=78.12 E-value=64 Score=30.65 Aligned_cols=136 Identities=7% Similarity=0.034 Sum_probs=90.5
Q ss_pred ChhHHHHHHHHhhh-CCCCCCHHHHHHHHHHHHH-cC-ChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHccCChhhHH
Q 004362 91 KVQEAVDVFERMDF-YNCEPTVLSYNTIMNILVE-YG-YFSQVHKVYMRMRNK-GIVPDVYTFVIRIKSFCRTRRPHVAL 166 (759)
Q Consensus 91 ~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-~~-~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~ 166 (759)
-..+|+.+|+.... ..+-.|......+++.... .+ ....-.++.+-+... +..++..+...++..++..+++..-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 35567777774321 2234677777777777765 22 222233444444433 34677778888999999999999999
Q ss_pred HHHhhchhC-CCCCCHHhHHHHHHHHHhcCChhHHHHHHHH-----HHhCCCCCChhhHHHHHHHH
Q 004362 167 RLLKNMPSQ-GFEPNAVAYCTLIAGFYEENHNVEAYELFDE-----MLGMGISPDIATFNKLIHTL 226 (759)
Q Consensus 167 ~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~l~~~~ 226 (759)
++++..... +...|...|...|......|+..-...+..+ +.+.++..+...-..+-+.+
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF 288 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELF 288 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHH
Confidence 999887665 5567889999999999999998777776655 23445565555555444444
No 376
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=77.99 E-value=1.1e+02 Score=33.46 Aligned_cols=41 Identities=17% Similarity=0.131 Sum_probs=20.8
Q ss_pred HHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHH
Q 004362 82 VMRNYGRRGKVQEAVDVFERMDFYNCEPTVLSYNTIMNILVE 123 (759)
Q Consensus 82 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (759)
++..+.++|++++|.++.......- ......+...+..+..
T Consensus 117 ~Iyy~LR~G~~~~A~~~~~~~~~~~-~~~~~~f~~~l~~~~~ 157 (613)
T PF04097_consen 117 LIYYCLRCGDYDEALEVANENRNQF-QKIERSFPTYLKAYAS 157 (613)
T ss_dssp HHHHHHTTT-HHHHHHHHHHTGGGS--TTTTHHHHHHHHCTT
T ss_pred HHHHHHhcCCHHHHHHHHHHhhhhh-cchhHHHHHHHHHHHh
Confidence 4455667777777777774433211 2333345555555554
No 377
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=77.99 E-value=28 Score=26.41 Aligned_cols=32 Identities=9% Similarity=0.036 Sum_probs=13.0
Q ss_pred CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004362 598 ISHTTATYNIMINAFSEKLNFYMAEKLFYEMS 629 (759)
Q Consensus 598 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 629 (759)
.|.|......++..+...|++++|++.+-+++
T Consensus 18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v 49 (90)
T PF14561_consen 18 NPDDLDARYALADALLAAGDYEEALDQLLELV 49 (90)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34444444444444444444444444444444
No 378
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=77.47 E-value=7 Score=28.26 Aligned_cols=49 Identities=14% Similarity=0.048 Sum_probs=28.7
Q ss_pred hcCCHHHHHHHHHHHHHcCCCC-C-HhhHHHHHHHHHhcCChHHHHHHHHH
Q 004362 614 EKLNFYMAEKLFYEMSEKGCPP-D-NYTYRIMIDSFCKTGGINSGYCLLLE 662 (759)
Q Consensus 614 ~~g~~~~A~~~~~~~~~~~~~p-~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 662 (759)
...+.++|+..|++++++-..| + ..++..|+.+|+..|++.+.+.+...
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666777776666552222 2 34455566677777777777665443
No 379
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=76.99 E-value=5.3 Score=22.18 Aligned_cols=27 Identities=15% Similarity=0.080 Sum_probs=20.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004362 604 TYNIMINAFSEKLNFYMAEKLFYEMSE 630 (759)
Q Consensus 604 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 630 (759)
.|..++.++...|++++|...+++.++
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 466677777777888888888777764
No 380
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=76.88 E-value=86 Score=31.50 Aligned_cols=91 Identities=10% Similarity=0.045 Sum_probs=61.4
Q ss_pred HHHHHHHccCChhhHHHHHHHHHHccCCCC-chhhHHHHHHHHH-hcCCHHHHHHHHHHHHHcC------CCCCHhhHHH
Q 004362 571 TLINGFCNSGDLDGAYQLFRRMEDQYKISH-TTATYNIMINAFS-EKLNFYMAEKLFYEMSEKG------CPPDNYTYRI 642 (759)
Q Consensus 571 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~------~~p~~~~~~~ 642 (759)
..+..+.+.|.+..|.++.+-+... .|. |+.....+++.|+ +.++++--+.+++...... .-|+ .. .+
T Consensus 108 r~i~~L~~RG~~rTAlE~~KlLlsL--dp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn-~a-~S 183 (360)
T PF04910_consen 108 RYIQSLGRRGCWRTALEWCKLLLSL--DPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPN-FA-FS 183 (360)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhc--CCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCcc-HH-HH
Confidence 3456778889999999999999888 676 7777777777766 5577887888887765420 1232 12 23
Q ss_pred HHHHHHhcCCh---------------HHHHHHHHHHHh
Q 004362 643 MIDSFCKTGGI---------------NSGYCLLLENID 665 (759)
Q Consensus 643 l~~~~~~~g~~---------------~~A~~~~~~~~~ 665 (759)
..-++...++. +.|...+.+++.
T Consensus 184 ~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~ 221 (360)
T PF04910_consen 184 IALAYFRLEKEESSQSSAQSGRSENSESADEALQKAIL 221 (360)
T ss_pred HHHHHHHhcCccccccccccccccchhHHHHHHHHHHH
Confidence 33345555555 788888777665
No 381
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=76.81 E-value=5.3 Score=40.17 Aligned_cols=105 Identities=8% Similarity=-0.044 Sum_probs=69.0
Q ss_pred HHHHHhCCChHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCC
Q 004362 47 IDKLGFHGNFEEMENLLLEMRMDVDDSLLEGVHIGVMRNYGRRGKVQEAVDVFERMDFYNCEPTVLSYNTIMNILVEYGY 126 (759)
Q Consensus 47 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 126 (759)
+......+.|+.|..++.+++..+|. +...+..-..++.+.+++..|+.=+.++.+.. +.....|..-..++...+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~ldpn--ca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELDPN--CAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcCCc--ceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhHHH
Confidence 44445677788888888888887776 55555556677778888888877777776543 2334445555556666667
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004362 127 FSQVHKVYMRMRNKGIVPDVYTFVIRIKSF 156 (759)
Q Consensus 127 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 156 (759)
+.+|...|+.... +.|+..-....+.-|
T Consensus 88 ~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 88 FKKALLDLEKVKK--LAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHhhh--cCcCcHHHHHHHHHH
Confidence 7777777777666 346666666555544
No 382
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=76.71 E-value=6.7 Score=28.37 Aligned_cols=45 Identities=13% Similarity=0.063 Sum_probs=19.8
Q ss_pred hCCChHHHHHHHHHHHhcCCCCccHH---HHHHHHHHHHhcCChhHHHHH
Q 004362 52 FHGNFEEMENLLLEMRMDVDDSLLEG---VHIGVMRNYGRRGKVQEAVDV 98 (759)
Q Consensus 52 ~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~ 98 (759)
.+++-++|+..+..+.+..+. .++ ++..++.+|...|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~--~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITD--REDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCC--hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555444444433 222 223344445555555555444
No 383
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=76.66 E-value=36 Score=31.89 Aligned_cols=87 Identities=10% Similarity=0.058 Sum_probs=44.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHH-----
Q 004362 538 GESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAF----- 612 (759)
Q Consensus 538 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~----- 612 (759)
|++++..++|.++....-+.-+.--+..+.+...-|-.|.+.|+...+.++-........+..- .-|..++..|
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~l-p~y~~vaELyLl~VL 168 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSL-PEYGTVAELYLLHVL 168 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCc-hhhHHHHHHHHHHHH
Confidence 5566666666666555444443211223334444455566666666666666666554222222 2244444333
Q ss_pred HhcCCHHHHHHHH
Q 004362 613 SEKLNFYMAEKLF 625 (759)
Q Consensus 613 ~~~g~~~~A~~~~ 625 (759)
.-.|.+++|.++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 3456666666665
No 384
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=76.64 E-value=1.2e+02 Score=32.98 Aligned_cols=123 Identities=10% Similarity=0.065 Sum_probs=75.0
Q ss_pred HHHHccCChhhHHHHHHHHHHccCCCCc--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC
Q 004362 574 NGFCNSGDLDGAYQLFRRMEDQYKISHT--TATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTG 651 (759)
Q Consensus 574 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 651 (759)
-++..-|..++|..+.+++... ..|- ..-...++-+|.-.|+..-..+++.-++.. ...|..-.-...-.+.-..
T Consensus 509 iaL~~ygrqe~Ad~lI~el~~d--kdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl~~ 585 (929)
T KOG2062|consen 509 IALVVYGRQEDADPLIKELLRD--KDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVLFR 585 (929)
T ss_pred HHHHHhhhhhhhHHHHHHHhcC--CchhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeEec
Confidence 3455567788898898888765 2111 112245667777888887777777766543 2333333333444555667
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHhcCcHHHHHHHHHHHHH
Q 004362 652 GINSGYCLLLENIDKGFIPSLSTIGRV-INCLCVDHRVHEAVGFVHLMVQ 700 (759)
Q Consensus 652 ~~~~A~~~~~~~~~~g~~p~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~ 700 (759)
+.+....+.+-+.+. .+|....-..+ +...|..--..+|+.+++.|..
T Consensus 586 dp~~~~s~V~lLses-~N~HVRyGaA~ALGIaCAGtG~~eAi~lLepl~~ 634 (929)
T KOG2062|consen 586 DPEQLPSTVSLLSES-YNPHVRYGAAMALGIACAGTGLKEAINLLEPLTS 634 (929)
T ss_pred ChhhchHHHHHHhhh-cChhhhhhHHHHHhhhhcCCCcHHHHHHHhhhhc
Confidence 778887777766653 55653333222 2333555566789999999975
No 385
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=76.00 E-value=12 Score=35.01 Aligned_cols=62 Identities=23% Similarity=0.199 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 004362 77 GVHIGVMRNYGRRGKVQEAVDVFERMDFYNCEPTVLSYNTIMNILVEYGYFSQVHKVYMRMRN 139 (759)
Q Consensus 77 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 139 (759)
..+....+.|..+|.+.+|.++.++....+ +.+...|-.+++.+...|+--.|.+-|+++.+
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 345556677777777777777777777554 55666677777777777777777777666653
No 386
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=75.90 E-value=64 Score=30.06 Aligned_cols=48 Identities=6% Similarity=-0.028 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHHhC---CCCCCHHHHHHHHHHH-----HhcCcHHHHHHHHHHHHH
Q 004362 653 INSGYCLLLENIDK---GFIPSLSTIGRVINCL-----CVDHRVHEAVGFVHLMVQ 700 (759)
Q Consensus 653 ~~~A~~~~~~~~~~---g~~p~~~~~~~l~~~~-----~~~g~~~~A~~~~~~~~~ 700 (759)
.+.|...|+++.+. .+.|.++....+.-++ --.|+.++|+++.+++.+
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 46777788877641 2778877776555444 247999999999988765
No 387
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=75.48 E-value=33 Score=26.00 Aligned_cols=38 Identities=13% Similarity=0.020 Sum_probs=18.0
Q ss_pred HHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 004362 64 LEMRMDVDDSLLEGVHIGVMRNYGRRGKVQEAVDVFERMD 103 (759)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 103 (759)
+.....+|. +.+....++..+...|++++|++.+-.+.
T Consensus 12 ~~~~a~~P~--D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v 49 (90)
T PF14561_consen 12 EAALAANPD--DLDARYALADALLAAGDYEEALDQLLELV 49 (90)
T ss_dssp HHHHHHSTT---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHcCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 333344444 44555555555555555555555554444
No 388
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=75.07 E-value=1.3e+02 Score=32.69 Aligned_cols=128 Identities=13% Similarity=0.121 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 004362 566 TVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMID 645 (759)
Q Consensus 566 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 645 (759)
......++..|.+.|-.+.|.++++.+-.. +.+.|++.+|+..+-+..+.. .-+..+ ..++.
T Consensus 405 ~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~----------------~~~~~~~g~AL~~~~ra~d~~-~v~~i~-~~ll~ 466 (566)
T PF07575_consen 405 NDDAEKLLEICAELGLEDVAREICKILGQR----------------LLKEGRYGEALSWFIRAGDYS-LVTRIA-DRLLE 466 (566)
T ss_dssp HHHHHHHHHHHHHHT-HHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHH-------------------
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHH----------------HHHCCCHHHHHHHHHHCCCHH-HHHHHH-HHHHH
Confidence 334455566666666666666666554433 345566777777776654321 111222 23444
Q ss_pred HHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHCCCCCc-hHHHHH
Q 004362 646 SFCKTGGINSGYCLLLENIDK-GFIPSLSTIGRVINCL--CVDHRVHEAVGFVHLMVQKGIVPE-VVNTIF 712 (759)
Q Consensus 646 ~~~~~g~~~~A~~~~~~~~~~-g~~p~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~ 712 (759)
.|...|... ...+++.+... .+.+.-.-+..+-..+ ...|++.+|.+.+-.+...++-|. .|..++
T Consensus 467 ~~~~~~~~~-~~~ll~~i~~~~~~~~~L~fla~yreF~~~~~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL 536 (566)
T PF07575_consen 467 EYCNNGEPL-DDDLLDNIGSPMLLSQRLSFLAKYREFYELYDEGDFREAASLLVSLLKSPIAPKSFWPLLL 536 (566)
T ss_dssp -----------------------------------------------------------------------
T ss_pred HHhcCCCcc-cHHHHHHhcchhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHCCCCCcHHHHHHHH
Confidence 555555322 22222222211 1111111122222222 456888888888777777778887 444444
No 389
>PRK10941 hypothetical protein; Provisional
Probab=75.03 E-value=24 Score=33.42 Aligned_cols=60 Identities=8% Similarity=-0.104 Sum_probs=39.3
Q ss_pred HHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004362 570 GTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEK 631 (759)
Q Consensus 570 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 631 (759)
+.+-.+|.+.++++.|+++.+.+... .|+++.-+.-.+-+|.+.|.+..|..-++..++.
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l--~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQF--DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 34445666677777777777777666 6666666666666666666666666666666544
No 390
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=74.74 E-value=77 Score=29.87 Aligned_cols=100 Identities=11% Similarity=0.139 Sum_probs=49.7
Q ss_pred cHHHHHHHHHHHHccCChhhHHHHHHHHHHccCC-CCchhhHH---HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-hh
Q 004362 565 DTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKI-SHTTATYN---IMINAFSEKLNFYMAEKLFYEMSEKGCPPDN-YT 639 (759)
Q Consensus 565 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~ 639 (759)
-..++..++..|+..++.+.+.+...+....... .-....+. .++-.|....-.++-++..+.+.++|..-+. .-
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNR 193 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNR 193 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhh
Confidence 3456667777777777777777766665443110 11122222 2333444444456666666666666644331 12
Q ss_pred HHHHHH-HHHhcCChHHHHHHHHHHH
Q 004362 640 YRIMID-SFCKTGGINSGYCLLLENI 664 (759)
Q Consensus 640 ~~~l~~-~~~~~g~~~~A~~~~~~~~ 664 (759)
|...-. -+....++.+|-.++...+
T Consensus 194 yK~Y~Gi~~m~~RnFkeAa~Ll~d~l 219 (412)
T COG5187 194 YKVYKGIFKMMRRNFKEAAILLSDIL 219 (412)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 222211 2333455666666555544
No 391
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.32 E-value=70 Score=30.59 Aligned_cols=48 Identities=17% Similarity=0.299 Sum_probs=25.7
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004362 371 DVDRAMAVYVKALEKGLKPSIVLYNTLIKGLSQQGLILQALQLMNEMS 418 (759)
Q Consensus 371 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 418 (759)
+.+.++.++..=+.-|+-||-.+.+.+++.+.+.+++.+|.++...|.
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 344555555555555555555555555555555555555555544443
No 392
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=73.71 E-value=73 Score=29.29 Aligned_cols=65 Identities=9% Similarity=-0.008 Sum_probs=55.9
Q ss_pred HHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 004362 568 AFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPD 636 (759)
Q Consensus 568 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 636 (759)
.+..+..++...|++-++++....+... .|.+..+|..-+.+....-+.++|..-|.++++. .|.
T Consensus 232 LllNy~QC~L~~~e~yevleh~seiL~~--~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l--dps 296 (329)
T KOG0545|consen 232 LLLNYCQCLLKKEEYYEVLEHCSEILRH--HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL--DPS 296 (329)
T ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc--Chh
Confidence 3445566778889999999999999998 8999999999999999999999999999999854 455
No 393
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=73.02 E-value=85 Score=29.60 Aligned_cols=89 Identities=11% Similarity=0.077 Sum_probs=52.9
Q ss_pred HHHHHHHccCChhhHHHHHhhchhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHH---
Q 004362 151 IRIKSFCRTRRPHVALRLLKNMPSQGFEPNAVAYCTLIAGFYEENHNVEAYELFDEMLGMGISPDIATFNKLIHTLC--- 227 (759)
Q Consensus 151 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--- 227 (759)
.=|++++.++++.++..+.-+....--+........-|-.|.+.+++..+.++-...++..-.-+...|..++..|.
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 34677777777777766554443321112234445555667788888888877777766432223344666555544
Q ss_pred --hcCChhHHHHHH
Q 004362 228 --KKGNVRESEKLF 239 (759)
Q Consensus 228 --~~g~~~~a~~~~ 239 (759)
-.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 357777777766
No 394
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=72.82 E-value=23 Score=28.43 Aligned_cols=46 Identities=11% Similarity=0.157 Sum_probs=35.4
Q ss_pred HHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHc
Q 004362 550 AFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQ 595 (759)
Q Consensus 550 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 595 (759)
..+-++.+...++-|++......+++|.+.+|+..|+++|+-+..+
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4455556666667788888888888888888888888888888776
No 395
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=72.29 E-value=96 Score=29.91 Aligned_cols=24 Identities=21% Similarity=0.425 Sum_probs=11.4
Q ss_pred HHHHHHHHHccCChhhHHHHHHHH
Q 004362 569 FGTLINGFCNSGDLDGAYQLFRRM 592 (759)
Q Consensus 569 ~~~l~~~~~~~g~~~~A~~~~~~~ 592 (759)
+......|++-||.+.|.+.+.+.
T Consensus 107 ~~~kaeYycqigDkena~~~~~~t 130 (393)
T KOG0687|consen 107 MLRKAEYYCQIGDKENALEALRKT 130 (393)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHH
Confidence 334444455555555555444444
No 396
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=72.07 E-value=7.4 Score=31.83 Aligned_cols=44 Identities=14% Similarity=0.131 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHH
Q 004362 620 MAEKLFYEMSEKGCPPD-NYTYRIMIDSFCKTGGINSGYCLLLEN 663 (759)
Q Consensus 620 ~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 663 (759)
++.++|+.|.++++--. +..|...+..+...|++++|..+|+.+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 55555555555554444 445555555555666666666665544
No 397
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=71.42 E-value=12 Score=24.81 Aligned_cols=31 Identities=10% Similarity=0.072 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCc
Q 004362 674 TIGRVINCLCVDHRVHEAVGFVHLMVQKGIVPE 706 (759)
Q Consensus 674 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 706 (759)
..+.+.-++++.|++++|.++.+.+++ +.|+
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~--~eP~ 33 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLE--IEPD 33 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HTTS
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCC
Confidence 345566677899999999999999988 6777
No 398
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=70.91 E-value=3e+02 Score=34.97 Aligned_cols=146 Identities=12% Similarity=0.029 Sum_probs=66.8
Q ss_pred cCCChHHHHHHHHHh-hhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhH
Q 004362 16 HQKNPLTALEMFNSV-KREDGFKHTLLTYKYMIDKLGFHGNFEEMENLLLEMRMDVDDSLLEGVHIGVMRNYGRRGKVQE 94 (759)
Q Consensus 16 ~~~~~~~A~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 94 (759)
+++.+..|+-.++.- ............|..+-..|+.-++.+...-+... ....| .+...+...-..|++++
T Consensus 1395 rc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~-r~a~~------sl~~qil~~e~~g~~~d 1467 (2382)
T KOG0890|consen 1395 RCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSAR-RFADP------SLYQQILEHEASGNWAD 1467 (2382)
T ss_pred hhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHH-hhcCc------cHHHHHHHHHhhccHHH
Confidence 455666666666652 11111111112222222255566665555444432 11111 23334444555666666
Q ss_pred HHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHccCChhhHHHHHh
Q 004362 95 AVDVFERMDFYNCEPTVLSYNTIMNILVEYGYFSQVHKVYMRMRNKGIVPDVYTFVIR-IKSFCRTRRPHVALRLLK 170 (759)
Q Consensus 95 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~A~~~~~ 170 (759)
|..+|+++...+ ++.+..++.++......|.++.++...+...... .+....++.+ +.+-.+.++++.....+.
T Consensus 1468 a~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1468 AAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 666666666443 3335556656655555666655555444443321 2222223222 233355555555544443
No 399
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=70.84 E-value=56 Score=29.73 Aligned_cols=36 Identities=11% Similarity=0.211 Sum_probs=19.9
Q ss_pred HHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 004362 85 NYGRRGKVQEAVDVFERMDFYNCEPTVLSYNTIMNIL 121 (759)
Q Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 121 (759)
.++..+++++|.+.+..+.+.|..|. ...+.+.+.+
T Consensus 247 ~~~~~~~~~~A~~il~~lw~lgysp~-Dii~~~FRv~ 282 (333)
T KOG0991|consen 247 QACLKRNIDEALKILAELWKLGYSPE-DIITTLFRVV 282 (333)
T ss_pred HHHHhccHHHHHHHHHHHHHcCCCHH-HHHHHHHHHH
Confidence 34455677777777777766653332 2334444444
No 400
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=70.45 E-value=1e+02 Score=29.55 Aligned_cols=151 Identities=14% Similarity=0.081 Sum_probs=86.9
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCc-----cHHHHHHHHHHHHhcCChhHHHHHHHHhh--hCCCCCCHHHH
Q 004362 42 TYKYMIDKLGFHGNFEEMENLLLEMRMDVDDSL-----LEGVHIGVMRNYGRRGKVQEAVDVFERMD--FYNCEPTVLSY 114 (759)
Q Consensus 42 ~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~~ 114 (759)
....++.+|-+.++|..|.+.+..+....+... -...+..+++.|...++..+|..+..+.. ... ..|...-
T Consensus 105 irl~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~-~~Ne~Lq 183 (399)
T KOG1497|consen 105 IRLHLASIYEKEQNWRDAAQVLVGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAE-SSNEQLQ 183 (399)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhc-ccCHHHH
Confidence 345588889999999999999987765542211 12356678999999999999999888754 111 1222211
Q ss_pred H----HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH---HccCChhhHHHHHhhchhCCCCCCHHhHHHH
Q 004362 115 N----TIMNILVEYGYFSQVHKVYMRMRNKGIVPDVYTFVIRIKSF---CRTRRPHVALRLLKNMPSQGFEPNAVAYCTL 187 (759)
Q Consensus 115 ~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 187 (759)
- .-.+++-..++|-+|-+.|.++....+-+...-...|-++. .-.+--..-.+++..+-.....+....|..+
T Consensus 184 ie~kvc~ARvlD~krkFlEAAqrYyels~~ki~~e~~~~~aL~~a~~CtlLA~~gpqrsr~Latlfkder~~~l~~y~il 263 (399)
T KOG1497|consen 184 IEYKVCYARVLDYKRKFLEAAQRYYELSQRKIVDESERLEALKKALQCTLLASAGPQRSRMLATLFKDERCQKLPAYGIL 263 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHhheeecCCChHHHHHHHHHhcCcccccccchHHH
Confidence 1 12233444677777777777776655444433333333221 1122223334444444443334455666666
Q ss_pred HHHHHh
Q 004362 188 IAGFYE 193 (759)
Q Consensus 188 ~~~~~~ 193 (759)
-..|..
T Consensus 264 eKmyl~ 269 (399)
T KOG1497|consen 264 EKMYLE 269 (399)
T ss_pred HHHHHH
Confidence 666554
No 401
>PRK11619 lytic murein transglycosylase; Provisional
Probab=69.83 E-value=1.8e+02 Score=32.08 Aligned_cols=443 Identities=8% Similarity=-0.014 Sum_probs=204.4
Q ss_pred cCCChHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCC-CccHHHHHHHHHHHHhcCChhH
Q 004362 16 HQKNPLTALEMFNSVKREDGFKHTLLTYKYMIDKLGFHGNFEEMENLLLEMRMDVDD-SLLEGVHIGVMRNYGRRGKVQE 94 (759)
Q Consensus 16 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 94 (759)
+.|++..+.+.-..+ ...+..| -..|..+...+ ....+++....++ ..|+ +....+.......+.+.+++..
T Consensus 45 ~~g~~~~~~~~~~~l-~d~pL~~-yl~y~~L~~~l-~~~~~~ev~~Fl~----~~~~~P~~~~Lr~~~l~~La~~~~w~~ 117 (644)
T PRK11619 45 DNRQMDVVEQLMPTL-KDYPLYP-YLEYRQLTQDL-MNQPAVQVTNFIR----ANPTLPPARSLQSRFVNELARREDWRG 117 (644)
T ss_pred HCCCHHHHHHHHHhc-cCCCcHh-HHHHHHHHhcc-ccCCHHHHHHHHH----HCCCCchHHHHHHHHHHHHHHccCHHH
Confidence 567888777666653 2222211 11222222211 1223443333333 2222 2244455556666677777777
Q ss_pred HHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhH--HHHHhhc
Q 004362 95 AVDVFERMDFYNCEPTVLSYNTIMNILVEYGYFSQVHKVYMRMRNKGIVPDVYTFVIRIKSFCRTRRPHVA--LRLLKNM 172 (759)
Q Consensus 95 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A--~~~~~~~ 172 (759)
.+.++..- +.+...-.....+....|+.++|......+-..|. ..+.....++..+.+.|..... .+=++.+
T Consensus 118 ~~~~~~~~-----p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~-~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~a 191 (644)
T PRK11619 118 LLAFSPEK-----PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGK-SLPNACDKLFSVWQQSGKQDPLAYLERIRLA 191 (644)
T ss_pred HHHhcCCC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CCChHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 77633211 45555556667777778887767666666544442 2334455555555544433221 1111111
Q ss_pred hhCCCCCCHHhHHHHHHHH-----------H-hcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHH--hcCChhHHHHH
Q 004362 173 PSQGFEPNAVAYCTLIAGF-----------Y-EENHNVEAYELFDEMLGMGISPDIATFNKLIHTLC--KKGNVRESEKL 238 (759)
Q Consensus 173 ~~~~~~~~~~~~~~l~~~~-----------~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~a~~~ 238 (759)
...+ +...-..++..+ . -..+...+..++.. ++++...-..++.++. ...+.+.|..+
T Consensus 192 l~~~---~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~-----~~~~~~~~~~~~~~l~Rlar~d~~~A~~~ 263 (644)
T PRK11619 192 MKAG---NTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFART-----TGPTDFTRQMAAVAFASVARQDAENARLM 263 (644)
T ss_pred HHCC---CHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhhc-----cCCChhhHHHHHHHHHHHHHhCHHHHHHH
Confidence 2111 111111111111 0 01111222211111 1122211111111221 33556788888
Q ss_pred HHHHhhCC-CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 004362 239 FNKVLKRG-VSPNL--FTFNMFIQGLCRKGAISEAISLLDSLGREDLTPDVVTYNTLMCGLCKNSKVVEAEYYLHKMVNE 315 (759)
Q Consensus 239 ~~~~~~~~-~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 315 (759)
+....... ..+.. .++..+.......+...++...++..... ..+.....--+......++++.+...+..|...
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~--~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~ 341 (644)
T PRK11619 264 IPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR--SQSTSLLERRVRMALGTGDRRGLNTWLARLPME 341 (644)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc--cCCcHHHHHHHHHHHHccCHHHHHHHHHhcCHh
Confidence 87764432 22221 22334443333433355666666654432 223344444455555788888888888877543
Q ss_pred CCCCChhcHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCH---HHH-HHHHHHHHHcCCCCCH
Q 004362 316 GLEPDGFSYNAVIDGYCKAGMISSADKILNDAIFKGFVPDEFTYCSLINGLCQDGDV---DRA-MAVYVKALEKGLKPSI 391 (759)
Q Consensus 316 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~A-~~~~~~~~~~~~~~~~ 391 (759)
. .-...-.--+.+++...|+.+.|...|+.+... ...|..+...- .|.. ... ...-.. . +...+
T Consensus 342 ~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~-----~~fYG~LAa~~--Lg~~~~~~~~~~~~~~~--~--~~~~~ 409 (644)
T PRK11619 342 A-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ-----RGFYPMVAAQR--LGEEYPLKIDKAPKPDS--A--LTQGP 409 (644)
T ss_pred h-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC-----CCcHHHHHHHH--cCCCCCCCCCCCCchhh--h--hccCh
Confidence 2 212333344566666788889998888886421 12333332211 1111 000 000000 0 00011
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--CCHhhHHHHHH
Q 004362 392 VLYNTLIKGLSQQGLILQALQLMNEMSESGCCPDMWTYNIVINGLCKMGCVSDANNLVNDAISKGYI--PDIFTFNTLID 469 (759)
Q Consensus 392 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~ 469 (759)
--.-+..+...|....|...+..+... .+......+.......|..+.+............. .-+..|...+.
T Consensus 410 --~~~ra~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~ 484 (644)
T PRK11619 410 --EMARVRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFR 484 (644)
T ss_pred --HHHHHHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHH
Confidence 112234456678888888888777764 24444555555556677777766655432211000 01223666677
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 004362 470 GYCKQLKMEIAIEILNTMWSHGVTPDVIT 498 (759)
Q Consensus 470 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 498 (759)
.+.+...++.++-.---..+.++.|+..+
T Consensus 485 ~~a~~~~v~~~lv~ai~rqES~f~p~a~S 513 (644)
T PRK11619 485 RYTSGKGIPQSYAMAIARQESAWNPKARS 513 (644)
T ss_pred HHHHHcCCCHHHHHHHHHHhcCCCCCCcc
Confidence 67666666665533333334556666543
No 402
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=69.48 E-value=11 Score=23.89 Aligned_cols=21 Identities=24% Similarity=0.176 Sum_probs=8.8
Q ss_pred HHHHHhCCChHHHHHHHHHHH
Q 004362 47 IDKLGFHGNFEEMENLLLEMR 67 (759)
Q Consensus 47 ~~~l~~~~~~~~A~~~~~~~~ 67 (759)
+++|...|+.+.|.++++.+.
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHH
Confidence 334444444444444444443
No 403
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=68.29 E-value=9.5 Score=34.23 Aligned_cols=53 Identities=19% Similarity=0.177 Sum_probs=31.7
Q ss_pred HccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004362 577 CNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEK 631 (759)
Q Consensus 577 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 631 (759)
.+.|+.+.|.++|.++... .|.....|..++..-.+.|+++.|.+-|++..+.
T Consensus 6 ~~~~D~~aaaely~qal~l--ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 6 AESGDAEAAAELYNQALEL--APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred cccCChHHHHHHHHHHhhc--CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 3455666666666666655 5556666666666556666666666666665543
No 404
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=67.96 E-value=3 Score=35.22 Aligned_cols=54 Identities=7% Similarity=0.065 Sum_probs=32.1
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHh
Q 004362 117 IMNILVEYGYFSQVHKVYMRMRNKGIVPDVYTFVIRIKSFCRTRRPHVALRLLK 170 (759)
Q Consensus 117 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 170 (759)
++..+.+.+..+.+..+++.+...+...+....+.++..|++.++.+...++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 345555566666666666666655434456666667777776666666666655
No 405
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=67.65 E-value=3.3 Score=34.93 Aligned_cols=53 Identities=9% Similarity=0.157 Sum_probs=27.5
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004362 223 IHTLCKKGNVRESEKLFNKVLKRGVSPNLFTFNMFIQGLCRKGAISEAISLLD 275 (759)
Q Consensus 223 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 275 (759)
+..+.+.+.+.....+++.+...+...+....+.++..|++.+..+...++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 34444455555555555555554444445555666666666555555555444
No 406
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=66.51 E-value=1.3e+02 Score=29.02 Aligned_cols=95 Identities=18% Similarity=0.168 Sum_probs=63.2
Q ss_pred HHHHHHhcCCChHHHHHHHHHhhhcCCCC-----CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCccHHHHHHHH
Q 004362 9 HVAAVVKHQKNPLTALEMFNSVKREDGFK-----HTLLTYKYMIDKLGFHGNFEEMENLLLEMRMDVDDSLLEGVHIGVM 83 (759)
Q Consensus 9 ~~~~~l~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 83 (759)
+|+.+..++++|+.|-+.+..+....|-. .-...+..+++.|...++..+|.....++.-.-..+.++.+....=
T Consensus 108 ~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~Lqie~k 187 (399)
T KOG1497|consen 108 HLASIYEKEQNWRDAAQVLVGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQLQIEYK 187 (399)
T ss_pred HHHHHHHHhhhHHHHHHHHhccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHHHHHHHH
Confidence 37788889999999999999865544321 2234777899999999999999988876653332222555544443
Q ss_pred HHHH----hcCChhHHHHHHHHhh
Q 004362 84 RNYG----RRGKVQEAVDVFERMD 103 (759)
Q Consensus 84 ~~~~----~~g~~~~A~~~~~~~~ 103 (759)
.+|+ ..++|-+|-..|.++.
T Consensus 188 vc~ARvlD~krkFlEAAqrYyels 211 (399)
T KOG1497|consen 188 VCYARVLDYKRKFLEAAQRYYELS 211 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3443 4566666666555554
No 407
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=66.33 E-value=66 Score=32.61 Aligned_cols=51 Identities=18% Similarity=0.253 Sum_probs=22.7
Q ss_pred hcCCHHHHHHHHHHHHHCCCCccHH--HHHHHHHHH--HccCChhhHHHHHHHHHH
Q 004362 543 KAHKITEAFNLLEEMENKGLTLDTV--AFGTLINGF--CNSGDLDGAYQLFRRMED 594 (759)
Q Consensus 543 ~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~--~~~g~~~~A~~~~~~~~~ 594 (759)
..+++..|.++++.+... ++++.. .+..+..+| ...-++++|.+.++....
T Consensus 143 n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 143 NRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred hcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 445555555555555543 333322 233333333 234455555555555443
No 408
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=65.95 E-value=3.7e+02 Score=34.22 Aligned_cols=321 Identities=12% Similarity=0.059 Sum_probs=177.3
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhcC-CCCccHHHHHHHHHHHHhcCChhHHHHHHHH-hhhCCCCCCHHHHHHHHHHHH
Q 004362 45 YMIDKLGFHGNFEEMENLLLEMRMDV-DDSLLEGVHIGVMRNYGRRGKVQEAVDVFER-MDFYNCEPTVLSYNTIMNILV 122 (759)
Q Consensus 45 ~l~~~l~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~~~l~~~~~ 122 (759)
.++.+-.+.+.+.+|.-.++...... +....+..+..+...|+.-+++|....+... .. .|+. + .-+-...
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a----~~sl--~-~qil~~e 1460 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA----DPSL--Y-QQILEHE 1460 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc----CccH--H-HHHHHHH
Confidence 45566678899999999998852222 2211334555566699999999999998874 33 2332 2 3344556
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHhhchhCCCCCCHHhHHHHH-HHHHhcCChhHHH
Q 004362 123 EYGYFSQVHKVYMRMRNKGIVPDVYTFVIRIKSFCRTRRPHVALRLLKNMPSQGFEPNAVAYCTLI-AGFYEENHNVEAY 201 (759)
Q Consensus 123 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~a~ 201 (759)
..|++..|..+|+.+.+.+ ++...+++.+++.....|.++...-..+-..... .+....|+++- .+-.+.++++...
T Consensus 1461 ~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e 1538 (2382)
T KOG0890|consen 1461 ASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLE 1538 (2382)
T ss_pred hhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhh
Confidence 7899999999999999875 2336778888888888888888888776665543 44555555543 3446777877776
Q ss_pred HHHHHHHhCCCCCChhhHHHH--HHHHHh--cCChhHHHHHHHHHhhC--------CCC-CCHHHHHHHHHHHHhcCCHH
Q 004362 202 ELFDEMLGMGISPDIATFNKL--IHTLCK--KGNVRESEKLFNKVLKR--------GVS-PNLFTFNMFIQGLCRKGAIS 268 (759)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~l--~~~~~~--~g~~~~a~~~~~~~~~~--------~~~-~~~~~~~~l~~~~~~~g~~~ 268 (759)
.... .. +..+|... .....+ ..|.-.-.++.+.+.+. +.. .-...|..++....-..- +
T Consensus 1539 ~~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el-~ 1610 (2382)
T KOG0890|consen 1539 SYLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLEL-E 1610 (2382)
T ss_pred hhhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHH-H
Confidence 6655 11 22222222 222222 12211111222222221 111 111344555544432211 1
Q ss_pred HHHHHHHHHh-hCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHH-HHCCCCC-----ChhcHHHHHHHHHHcCChhHHH
Q 004362 269 EAISLLDSLG-REDLTPDVVTYNTLMCGLCKNSKVVEAEYYLHKM-VNEGLEP-----DGFSYNAVIDGYCKAGMISSAD 341 (759)
Q Consensus 269 ~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~-----~~~~~~~ll~~~~~~~~~~~a~ 341 (759)
.-.+.+.... .....-+..-|..-+..-....+..+-+-.+++. ......| -..+|....+.....|+++.|.
T Consensus 1611 ~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~ 1690 (2382)
T KOG0890|consen 1611 NSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQ 1690 (2382)
T ss_pred HHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHH
Confidence 1111111111 1111111222322222211112222222222222 1111121 2346777777777899999998
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004362 342 KILNDAIFKGFVPDEFTYCSLINGLCQDGDVDRAMAVYVKALEK 385 (759)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 385 (759)
..+-.+.+.+ -+..+.-.+..+...|+...|+.++++..+.
T Consensus 1691 nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1691 NALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 8877776654 3445566677788999999999999998865
No 409
>PRK10941 hypothetical protein; Provisional
Probab=65.52 E-value=77 Score=30.15 Aligned_cols=67 Identities=10% Similarity=-0.024 Sum_probs=50.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhh
Q 004362 535 SILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTAT 604 (759)
Q Consensus 535 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 604 (759)
..+-.+|.+.++++.|..+.+.+... .|.++.-+.--.-.|.+.|.+..|..-++...+. .|.++.+
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l-~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~--~P~dp~a 251 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQF-DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ--CPEDPIS 251 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh--CCCchhH
Confidence 34556677888888888888888876 4556666777777788889999999988888888 4544443
No 410
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=65.35 E-value=61 Score=24.94 Aligned_cols=53 Identities=17% Similarity=0.231 Sum_probs=29.0
Q ss_pred HHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 004362 83 MRNYGRRGKVQEAVDVFERMDFYNCEPTVLSYNTIMNILVEYGYFSQVHKVYMRMRNKG 141 (759)
Q Consensus 83 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 141 (759)
+..+..+|+|++|..+.+... -||...|-++- -.+.|..+.+...+.++..+|
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~~----~pdlepw~ALc--e~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKLC----YPDLEPWLALC--EWRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHHccchHHHHHHhcCCCC----CchHHHHHHHH--HHhhccHHHHHHHHHHHHhCC
Confidence 334556666666666665553 46666665432 234555555555555555554
No 411
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=65.18 E-value=69 Score=32.37 Aligned_cols=147 Identities=12% Similarity=-0.004 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhhhc-----CCCCCCHHHHHHHHHHHHh-------CCChHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 004362 20 PLTALEMFNSVKRE-----DGFKHTLLTYKYMIDKLGF-------HGNFEEMENLLLEMRMDVDDSLLEGVHIGVMRNYG 87 (759)
Q Consensus 20 ~~~A~~~~~~~~~~-----~~~~~~~~~~~~l~~~l~~-------~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 87 (759)
..+.+..|+..... ....|........+..+.+ ....-+|.-+++.+....|. +......+++.|.
T Consensus 151 ~~~~~~~y~~~l~~~~~l~te~~~~d~~~lla~~~Ll~~~~~~~~~~~l~~Ai~lLE~~l~~s~~--n~~~~LlLvrlY~ 228 (365)
T PF09797_consen 151 AQELLKLYQESLSLGKDLKTESQPADELALLAAHSLLDLYSKTKDSEYLLQAIALLEHALKKSPH--NYQLKLLLVRLYS 228 (365)
T ss_pred HHHHHHHHHhhCccccccccccCchHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHH
Q ss_pred hcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCChhHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHH
Q 004362 88 RRGKVQEAVDVFERMDFYNCEPTVLSYNTIMNILVEYGYFSQVH-KVYMRMRNKGIVPDVYTFVIRIKSFCRTRRPHVAL 166 (759)
Q Consensus 88 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 166 (759)
..|-...|...|..+.-+.++.|...+. +..-+...|....+. ..++....- ...+.....-.+....+.|.+.+..
T Consensus 229 ~LG~~~~A~~~~~~L~iK~IQ~DTL~h~-~~~r~~~~~~~~~~~~~~~~~~~~f-y~~~~~~~~e~i~~af~~gsysKi~ 306 (365)
T PF09797_consen 229 LLGAGSLALEHYESLDIKNIQLDTLGHL-ILDRLSTLGPFKSAPENLLENALKF-YDNSEKETPEFIIKAFENGSYSKIE 306 (365)
T ss_pred HcCCHHHHHHHHHhcChHHHHHHHhHHH-HHHHHhccCcccccchHHHHHHHHH-HHHHHHHHHHHHHHHHhCCCchhHH
Q ss_pred HHHh
Q 004362 167 RLLK 170 (759)
Q Consensus 167 ~~~~ 170 (759)
++.+
T Consensus 307 ef~~ 310 (365)
T PF09797_consen 307 EFIE 310 (365)
T ss_pred HHHH
No 412
>PRK12798 chemotaxis protein; Reviewed
Probab=64.91 E-value=1.6e+02 Score=29.73 Aligned_cols=198 Identities=8% Similarity=-0.067 Sum_probs=109.6
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCC----hhcHHHHHHHHHhcCCHH
Q 004362 474 QLKMEIAIEILNTMWSHGVTPDVITYNSLLNGL-CKAAKSEDVMETFKTMIEKRCVPN----IITYSILGESLCKAHKIT 548 (759)
Q Consensus 474 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~ 548 (759)
.|+.+++.+.+..+.....++....+-.|+.+- ....++..|+++|+...-. .|. ...+..-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 567777777777766655566666666666543 3345677777777776543 222 123334445556778887
Q ss_pred HHHHHHHHHHHCCCCccH---HHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHH
Q 004362 549 EAFNLLEEMENKGLTLDT---VAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLF 625 (759)
Q Consensus 549 ~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 625 (759)
++..+-....+. +..++ ..+..+..++.+.++-..- ..+..+......+.-..+|..+++.-.-.|+.+-|.-.-
T Consensus 203 rf~~la~~Y~rR-F~~S~YA~~F~~~F~~~~~~~~d~~~~-~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As 280 (421)
T PRK12798 203 KFEALARNYLRR-FRHSPYASQFAQRFVDLVVRLDDEIRD-ARLVEILSFMDPERQRELYLRIARAALIDGKTELARFAS 280 (421)
T ss_pred HHHHHHHHHHHH-hccCchHHHHHHHHHHHHHhccccccH-HHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 776666665543 22222 2233344444444432222 224444444333334677888888888889888888888
Q ss_pred HHHHHcCCCCCH-hhHHHH--HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH
Q 004362 626 YEMSEKGCPPDN-YTYRIM--IDSFCKTGGINSGYCLLLENIDKGFIPSLSTI 675 (759)
Q Consensus 626 ~~~~~~~~~p~~-~~~~~l--~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 675 (759)
+++....-..+. ...-.| ..+-.-..++++|+..+..+-...+.|.+..+
T Consensus 281 ~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L~~~Dr~L 333 (421)
T PRK12798 281 ERALKLADPDSADAARARLYRGAALVASDDAESALEELSQIDRDKLSERDRAL 333 (421)
T ss_pred HHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhCChhhHHH
Confidence 877754311111 111111 11223456688888877776554466654433
No 413
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=64.51 E-value=1.1e+02 Score=29.72 Aligned_cols=94 Identities=16% Similarity=0.067 Sum_probs=44.2
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHH
Q 004362 533 TYSILGESLCKAHKITEAFNLLEEMENKGL---TLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMI 609 (759)
Q Consensus 533 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 609 (759)
+|.-=++-|.+..++..|...|.+.++... ..+...|..-..+-.-.|++..|+.-...+... .|.....|..=+
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~--~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL--KPTHLKAYIRGA 160 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc--Ccchhhhhhhhh
Confidence 344444445555555555555555544311 112233443333334445555555555555444 444445554445
Q ss_pred HHHHhcCCHHHHHHHHHHH
Q 004362 610 NAFSEKLNFYMAEKLFYEM 628 (759)
Q Consensus 610 ~~~~~~g~~~~A~~~~~~~ 628 (759)
.++....++++|..+.++.
T Consensus 161 kc~~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 5555555555555544443
No 414
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.42 E-value=2.6e+02 Score=31.85 Aligned_cols=26 Identities=31% Similarity=0.574 Sum_probs=16.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004362 394 YNTLIKGLSQQGLILQALQLMNEMSE 419 (759)
Q Consensus 394 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 419 (759)
|..|+..|...|..++|++++.+...
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhc
Confidence 55666666666666666666666654
No 415
>PRK09687 putative lyase; Provisional
Probab=63.55 E-value=1.4e+02 Score=28.66 Aligned_cols=17 Identities=24% Similarity=-0.027 Sum_probs=8.3
Q ss_pred CHHHHHHHHHHHHhcCC
Q 004362 250 NLFTFNMFIQGLCRKGA 266 (759)
Q Consensus 250 ~~~~~~~l~~~~~~~g~ 266 (759)
+..+-...+.++.+.|+
T Consensus 205 ~~~VR~~A~~aLg~~~~ 221 (280)
T PRK09687 205 NEEIRIEAIIGLALRKD 221 (280)
T ss_pred ChHHHHHHHHHHHccCC
Confidence 44444444555555554
No 416
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=63.30 E-value=18 Score=20.34 Aligned_cols=14 Identities=14% Similarity=0.484 Sum_probs=6.2
Q ss_pred hhhHHHHHHHHHHc
Q 004362 582 LDGAYQLFRRMEDQ 595 (759)
Q Consensus 582 ~~~A~~~~~~~~~~ 595 (759)
.+.|..+|+++...
T Consensus 3 ~~~~r~i~e~~l~~ 16 (33)
T smart00386 3 IERARKIYERALEK 16 (33)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 417
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=62.24 E-value=1.6e+02 Score=28.72 Aligned_cols=181 Identities=12% Similarity=0.159 Sum_probs=99.2
Q ss_pred HHHHHHHHccCChhhHHHHHHHHHHccCCCCc----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCHh-hH
Q 004362 570 GTLINGFCNSGDLDGAYQLFRRMEDQYKISHT----TATYNIMINAFSEKLNFYMAEKLFYEMSEK----GCPPDNY-TY 640 (759)
Q Consensus 570 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~~-~~ 640 (759)
..++..|...+++.+|+.+...+......-+| ...+..=..+|....++.+|..-+..+... -+||-.. +.
T Consensus 132 arli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~l 211 (411)
T KOG1463|consen 132 ARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATL 211 (411)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHH
Confidence 46778888888998888887776554322222 222333345666667777776666555432 2345422 22
Q ss_pred HHHHH-HHHhcCChHHHHHHHHHHHhC--CCCCCHHHH--H-HHHHHHHhcCcHHHHHHHHHHHHH-CCCCCc--hHHHH
Q 004362 641 RIMID-SFCKTGGINSGYCLLLENIDK--GFIPSLSTI--G-RVINCLCVDHRVHEAVGFVHLMVQ-KGIVPE--VVNTI 711 (759)
Q Consensus 641 ~~l~~-~~~~~g~~~~A~~~~~~~~~~--g~~p~~~~~--~-~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~--~~~~~ 711 (759)
...-. .++...||..|..+|-++.+- .+..+.... . .++-+-...+..++.-.++..=.. +-..|+ ...+.
T Consensus 212 DLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~Amkav 291 (411)
T KOG1463|consen 212 DLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAV 291 (411)
T ss_pred HHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHH
Confidence 22222 344558899999999998872 112221211 1 222222567888877665543211 112233 44445
Q ss_pred Hhc----cccccccchHHHHHHHhcCCCchHHHHHHHhhhhhh
Q 004362 712 FEA----DKREVASPKIVVEDLLKKSHITYYAYELLFDGIRDK 750 (759)
Q Consensus 712 ~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 750 (759)
.++ +..+++.|..-|+.=+.-++.....+.-|++.+-++
T Consensus 292 AeA~~nRSLkdF~~AL~~yk~eL~~D~ivr~Hl~~Lyd~lLEk 334 (411)
T KOG1463|consen 292 AEAFGNRSLKDFEKALADYKKELAEDPIVRSHLQSLYDNLLEK 334 (411)
T ss_pred HHHhcCCcHHHHHHHHHHhHHHHhcChHHHHHHHHHHHHHHHH
Confidence 554 223456666666666666777666666666654443
No 418
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=62.01 E-value=47 Score=25.39 Aligned_cols=18 Identities=11% Similarity=-0.042 Sum_probs=10.8
Q ss_pred HhcCcHHHHHHHHHHHHH
Q 004362 683 CVDHRVHEAVGFVHLMVQ 700 (759)
Q Consensus 683 ~~~g~~~~A~~~~~~~~~ 700 (759)
...|++++|...++++++
T Consensus 52 ~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 52 RRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHhCCHHHHHHHHHHHHH
Confidence 455666666666666554
No 419
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.86 E-value=2.5e+02 Score=30.91 Aligned_cols=73 Identities=16% Similarity=0.204 Sum_probs=35.2
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 004362 189 AGFYEENHNVEAYELFDEMLGMGISPD---IATFNKLIHTLCKKGNVRESEKLFNKVLKRGVSPNLFTFNMFIQGLCRKG 265 (759)
Q Consensus 189 ~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 265 (759)
..+.+.+.+++|+++-+..... .|. .......+..+.-.|++++|-...-.|... +..-|..-+..+...+
T Consensus 364 ~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~ 437 (846)
T KOG2066|consen 364 DWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELD 437 (846)
T ss_pred HHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhcccc
Confidence 3444555566666555544322 221 123344455555556666666555555443 3444444444444444
Q ss_pred CH
Q 004362 266 AI 267 (759)
Q Consensus 266 ~~ 267 (759)
+.
T Consensus 438 ~l 439 (846)
T KOG2066|consen 438 QL 439 (846)
T ss_pred cc
Confidence 43
No 420
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=61.58 E-value=95 Score=30.12 Aligned_cols=57 Identities=18% Similarity=0.136 Sum_probs=35.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC---CCCccHHHH--HHHHHHHHccCChhhHHHHHHHHHH
Q 004362 538 GESLCKAHKITEAFNLLEEMENK---GLTLDTVAF--GTLINGFCNSGDLDGAYQLFRRMED 594 (759)
Q Consensus 538 ~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~ 594 (759)
+....+.++.++|.++++++.+. .-.|+...| ...++++...||.+++.+.++....
T Consensus 82 l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 82 LVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 33444556777888877777653 223444443 3345566677777777777776655
No 421
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=61.22 E-value=1.5e+02 Score=28.13 Aligned_cols=82 Identities=13% Similarity=0.256 Sum_probs=42.5
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH-HHH
Q 004362 600 HTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSLSTI-GRV 678 (759)
Q Consensus 600 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~-~~l 678 (759)
-++.....++..|.+.|++.+|..+|-.- -.|+...+..++......|...++ ..+ ...
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~----~~~~~~~~~~ll~~~~~~~~~~e~----------------dlfi~Ra 147 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLG----TDPSAFAYVMLLEEWSTKGYPSEA----------------DLFIARA 147 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-----HHHHHHHHHHHHHHHHHTSS--H----------------HHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhc----CChhHHHHHHHHHHHHHhcCCcch----------------hHHHHHH
Confidence 46777888888888888888888776432 122233332233322222322222 111 122
Q ss_pred HHHHHhcCcHHHHHHHHHHHHHC
Q 004362 679 INCLCVDHRVHEAVGFVHLMVQK 701 (759)
Q Consensus 679 ~~~~~~~g~~~~A~~~~~~~~~~ 701 (759)
+-.|.-.|+...|...++...++
T Consensus 148 VL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 148 VLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH
Confidence 22335678888888877777654
No 422
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=60.89 E-value=35 Score=26.13 Aligned_cols=23 Identities=17% Similarity=0.169 Sum_probs=11.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh
Q 004362 643 MIDSFCKTGGINSGYCLLLENID 665 (759)
Q Consensus 643 l~~~~~~~g~~~~A~~~~~~~~~ 665 (759)
++..+...|++++|+..++++++
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH
Confidence 33344445555555555555543
No 423
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=60.19 E-value=43 Score=27.28 Aligned_cols=39 Identities=15% Similarity=0.150 Sum_probs=15.8
Q ss_pred HHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCChHHHHHHH
Q 004362 622 EKLFYEMSEKGCPPD-NYTYRIMIDSFCKTGGINSGYCLL 660 (759)
Q Consensus 622 ~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 660 (759)
.++|+.|..+++--. +..|...+..+-..|++.+|..+|
T Consensus 83 ~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy 122 (125)
T smart00777 83 RELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVY 122 (125)
T ss_pred HHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 334444444433332 233333334444444444444444
No 424
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=59.79 E-value=83 Score=24.62 Aligned_cols=79 Identities=11% Similarity=0.025 Sum_probs=44.2
Q ss_pred ChHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHH
Q 004362 19 NPLTALEMFNSVKREDGFKHTLLTYKYMIDKLGFHGNFEEMENLLLEMRMDVDDSLLEGVHIGVMRNYGRRGKVQEAVDV 98 (759)
Q Consensus 19 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 98 (759)
+.++|-.+.+|.....+. ...+.-.-+..+.+.|+|++| +...... + .+++-..++-+-.+.|..+++...
T Consensus 21 cH~EA~tIa~wL~~~~~~--~E~v~lIr~~sLmNrG~Yq~A---Ll~~~~~--~--~pdL~p~~AL~a~klGL~~~~e~~ 91 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGEM--EEVVALIRLSSLMNRGDYQEA---LLLPQCH--C--YPDLEPWAALCAWKLGLASALESR 91 (116)
T ss_dssp -HHHHHHHHHHHHHTTTT--HHHHHHHHHHHHHHTT-HHHH---HHHHTTS------GGGHHHHHHHHHHCT-HHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcH--HHHHHHHHHHHHHhhHHHHHH---HHhcccC--C--CccHHHHHHHHHHhhccHHHHHHH
Confidence 568888888886554431 222222334456688888888 2222222 1 334555556666788888888888
Q ss_pred HHHhhhCC
Q 004362 99 FERMDFYN 106 (759)
Q Consensus 99 ~~~~~~~~ 106 (759)
+.++..+|
T Consensus 92 l~rla~~g 99 (116)
T PF09477_consen 92 LTRLASSG 99 (116)
T ss_dssp HHHHCT-S
T ss_pred HHHHHhCC
Confidence 88777555
No 425
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.45 E-value=2.2e+02 Score=29.39 Aligned_cols=147 Identities=11% Similarity=-0.025 Sum_probs=71.3
Q ss_pred hcCCHHHHHHHHHHHHHC-CCCccHHH-------HHHHHHH-HHccCChhhHHHHHHHHHHccCCCCchhh--HHHHHHH
Q 004362 543 KAHKITEAFNLLEEMENK-GLTLDTVA-------FGTLING-FCNSGDLDGAYQLFRRMEDQYKISHTTAT--YNIMINA 611 (759)
Q Consensus 543 ~~~~~~~a~~~~~~~~~~-~~~~~~~~-------~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~~l~~~ 611 (759)
-.|++.+|++-+..|.+. .-.|.+.. ...++.. +...+.++.|...|..+.+..... +..+ -..++..
T Consensus 335 v~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~-dl~a~~nlnlAi~ 413 (629)
T KOG2300|consen 335 VRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESI-DLQAFCNLNLAIS 413 (629)
T ss_pred HhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHH-HHHHHHHHhHHHH
Confidence 457777777777777653 11222111 1222222 334566777777777666552221 2222 2335566
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHhh----------HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-------H
Q 004362 612 FSEKLNFYMAEKLFYEMSEKGCPPDNYT----------YRIMIDSFCKTGGINSGYCLLLENIDKGFIPSLS-------T 674 (759)
Q Consensus 612 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~----------~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-------~ 674 (759)
|.+.|+-+.--++++.+ + +|+..+ +..-+-.....+++.+|...+.+.++. . +.+ .
T Consensus 414 YL~~~~~ed~y~~ld~i---~-p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkm--a-naed~~rL~a~ 486 (629)
T KOG2300|consen 414 YLRIGDAEDLYKALDLI---G-PLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKM--A-NAEDLNRLTAC 486 (629)
T ss_pred HHHhccHHHHHHHHHhc---C-CCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh--c-chhhHHHHHHH
Confidence 66666555444444333 2 332221 111222234567777777777777662 1 211 1
Q ss_pred HHHHHHHH-HhcCcHHHHHHHHHH
Q 004362 675 IGRVINCL-CVDHRVHEAVGFVHL 697 (759)
Q Consensus 675 ~~~l~~~~-~~~g~~~~A~~~~~~ 697 (759)
...+++.. ...|+..++.+...-
T Consensus 487 ~LvLLs~v~lslgn~~es~nmvrp 510 (629)
T KOG2300|consen 487 SLVLLSHVFLSLGNTVESRNMVRP 510 (629)
T ss_pred HHHHHHHHHHHhcchHHHHhccch
Confidence 12333333 466777776665444
No 426
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=58.21 E-value=3e+02 Score=30.61 Aligned_cols=80 Identities=10% Similarity=-0.078 Sum_probs=43.9
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHH-HhcCcHHH
Q 004362 614 EKLNFYMAEKLFYEMSEKGCPPD-NYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSLS-TIGRVINCL-CVDHRVHE 690 (759)
Q Consensus 614 ~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~-~~~g~~~~ 690 (759)
..++.+.+..+++.....+ .-+ ...|...+..-...|+...+..+++++...-..|+.. ........+ ...|.++.
T Consensus 474 l~~nmd~~R~iWn~imty~-~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~~~~~~ev~~~~~r~Ere~gtl~~ 552 (881)
T KOG0128|consen 474 LLKNMDKAREIWNFIMTYG-GGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQVVDPEDALEVLEFFRRFEREYGTLES 552 (881)
T ss_pred HhhchhhhhHhhhccccCC-cchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcCcCchhHHHHHHHHHHHHhccccHHH
Confidence 3467777777777766443 112 2245555555566677777777777776544445422 222222222 34566665
Q ss_pred HHHH
Q 004362 691 AVGF 694 (759)
Q Consensus 691 A~~~ 694 (759)
+...
T Consensus 553 ~~~~ 556 (881)
T KOG0128|consen 553 FDLC 556 (881)
T ss_pred Hhhh
Confidence 5443
No 427
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=57.94 E-value=9.2 Score=31.03 Aligned_cols=27 Identities=15% Similarity=0.304 Sum_probs=11.8
Q ss_pred CcHHHHHHHHHHHHHCCCCCchHHHHH
Q 004362 686 HRVHEAVGFVHLMVQKGIVPEVVNTIF 712 (759)
Q Consensus 686 g~~~~A~~~~~~~~~~~~~p~~~~~~~ 712 (759)
|...+|..+|++|++.|-.||.|..++
T Consensus 109 gsk~DaY~VF~kML~~G~pPddW~~Ll 135 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPDDWDALL 135 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCccHHHHH
Confidence 444444444444444444444444443
No 428
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=57.90 E-value=1.7e+02 Score=29.83 Aligned_cols=56 Identities=9% Similarity=0.244 Sum_probs=42.1
Q ss_pred HHHHccCChhhHHHHHHHHHHccCCCCchh--hHHHHHHHHH--hcCCHHHHHHHHHHHHHc
Q 004362 574 NGFCNSGDLDGAYQLFRRMEDQYKISHTTA--TYNIMINAFS--EKLNFYMAEKLFYEMSEK 631 (759)
Q Consensus 574 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~g~~~~A~~~~~~~~~~ 631 (759)
..+...+++..|.++++.+... .|++.. .+..+..+|. ..-++.+|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r--l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR--LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh--CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3445789999999999999986 555544 5555656665 467899999999988754
No 429
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=57.47 E-value=3e+02 Score=30.32 Aligned_cols=44 Identities=14% Similarity=0.138 Sum_probs=22.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 004362 220 NKLIHTLCKKGNVRESEKLFNKVLKRGVSPNLFTFNMFIQGLCRK 264 (759)
Q Consensus 220 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 264 (759)
-.++-.|.+.|++++|.++....... .......+...+..|...
T Consensus 115 Wa~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 115 WALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 34555566777777777776443322 233334455555555543
No 430
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=57.13 E-value=88 Score=25.31 Aligned_cols=45 Identities=9% Similarity=0.065 Sum_probs=36.9
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004362 621 AEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCLLLENID 665 (759)
Q Consensus 621 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 665 (759)
..+-++.+..-++-|++.+...-+.+|.+-+|+..|+++|+-...
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 444455566667889999999999999999999999999988764
No 431
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=56.26 E-value=35 Score=30.61 Aligned_cols=31 Identities=16% Similarity=-0.021 Sum_probs=20.2
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 004362 75 LEGVHIGVMRNYGRRGKVQEAVDVFERMDFY 105 (759)
Q Consensus 75 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 105 (759)
+..++..++..+...|+.++|.++.+++...
T Consensus 143 ~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 143 DPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4556666666777777777777766666643
No 432
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=54.91 E-value=2.1e+02 Score=27.78 Aligned_cols=86 Identities=9% Similarity=0.187 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHh----hhCCCCCCHHHHHHHH-HHHHHcCChhHH
Q 004362 56 FEEMENLLLEMRMDVDDSLLEGVHIGVMRNYGRRGKVQEAVDVFERM----DFYNCEPTVLSYNTIM-NILVEYGYFSQV 130 (759)
Q Consensus 56 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~~~~l~-~~~~~~~~~~~a 130 (759)
.++-.+..+.+.+..+.+--.++....+.-|++.|+-+.|.+.+.+- ...|.+-|+.-+..-+ -.|..+.-..+-
T Consensus 84 i~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~ 163 (393)
T KOG0687|consen 84 IKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTES 163 (393)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHH
Confidence 33444444444444333112345555666677777777777666543 2345455554443322 223333334445
Q ss_pred HHHHHHHHHCC
Q 004362 131 HKVYMRMRNKG 141 (759)
Q Consensus 131 ~~~~~~~~~~~ 141 (759)
++....+.+.|
T Consensus 164 iekak~liE~G 174 (393)
T KOG0687|consen 164 IEKAKSLIEEG 174 (393)
T ss_pred HHHHHHHHHhC
Confidence 55555555555
No 433
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=54.38 E-value=44 Score=29.96 Aligned_cols=46 Identities=13% Similarity=0.117 Sum_probs=30.9
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 004362 621 AEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIP 670 (759)
Q Consensus 621 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 670 (759)
.++..++..+. .|++.+|..++.++...|+.++|.....++.. +-|
T Consensus 130 ~~~~a~~~l~~--~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~--lyP 175 (193)
T PF11846_consen 130 YIEWAERLLRR--RPDPNVYQRYALALALLGDPEEARQWLARARR--LYP 175 (193)
T ss_pred HHHHHHHHHHh--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCC
Confidence 34444455433 57777777777777777777777777777777 666
No 434
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=53.89 E-value=38 Score=32.16 Aligned_cols=65 Identities=8% Similarity=-0.028 Sum_probs=34.5
Q ss_pred CccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHH-HHHHHHhcCCHHHHHHHHHHHH
Q 004362 563 TLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNI-MINAFSEKLNFYMAEKLFYEMS 629 (759)
Q Consensus 563 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~ 629 (759)
..|+..|...+....+.|.+.+.-.+|.++... .|.+...|.. ...-+...++++.+..+|.+.+
T Consensus 104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~k--hP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~gl 169 (435)
T COG5191 104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTK--HPLNVDLWIYCCAFELFEIANIESSRAMFLKGL 169 (435)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCceeeeeeccchhhhhccHHHHHHHHHhhh
Confidence 345555555554444555555555555555555 5555555543 3344455555555555555555
No 435
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=53.42 E-value=4.3e+02 Score=30.91 Aligned_cols=129 Identities=10% Similarity=0.083 Sum_probs=72.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH----H
Q 004362 603 ATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPD----NYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSLS----T 674 (759)
Q Consensus 603 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~----~ 674 (759)
+.|...++.+-+.+-.+++.++.-.+++. ++++ +.+++++..-....|.+.+|...+-+ .|+.+ .
T Consensus 984 hYYlkv~rlle~hn~~E~vcQlA~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~------npdserrrdc 1056 (1480)
T KOG4521|consen 984 HYYLKVVRLLEEHNHAEEVCQLAVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILR------NPDSERRRDC 1056 (1480)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc------CCcHHHHHHH
Confidence 44566677778888888888888777764 3444 34566666666677777777664332 24433 3
Q ss_pred HHHHHHHHHhcCcHHH------------HHH-HHHHHHHCC-C-CCchHHHHHhc---cccccccchHHHHHHHhcCCCc
Q 004362 675 IGRVINCLCVDHRVHE------------AVG-FVHLMVQKG-I-VPEVVNTIFEA---DKREVASPKIVVEDLLKKSHIT 736 (759)
Q Consensus 675 ~~~l~~~~~~~g~~~~------------A~~-~~~~~~~~~-~-~p~~~~~~~~~---~~~~~~~a~~~~~~~~~~~~~~ 736 (759)
...++..++.+|.++. ... +++...+.. + +|+.+.-++.. +++-..-|-.+|+.....+-..
T Consensus 1057 LRqlvivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamrl~se~ 1136 (1480)
T KOG4521|consen 1057 LRQLVIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMRLESET 1136 (1480)
T ss_pred HHHHHHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHHhcccc
Confidence 3455555566666543 223 333333221 1 23344444433 4444455566777777665554
Q ss_pred hH
Q 004362 737 YY 738 (759)
Q Consensus 737 ~~ 738 (759)
+.
T Consensus 1137 ~~ 1138 (1480)
T KOG4521|consen 1137 CM 1138 (1480)
T ss_pred cC
Confidence 43
No 436
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=53.32 E-value=2.6e+02 Score=28.44 Aligned_cols=59 Identities=19% Similarity=0.160 Sum_probs=30.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHc
Q 004362 536 ILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQ 595 (759)
Q Consensus 536 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 595 (759)
.++.-|...|+..+|...++++--- +-.....+.+++.+..+.|+-..-+.+++.....
T Consensus 514 ~LLeEY~~~GdisEA~~CikeLgmP-fFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~s 572 (645)
T KOG0403|consen 514 MLLEEYELSGDISEACHCIKELGMP-FFHHEVVKKALVMVMEKKGDSTMILDLLKECFKS 572 (645)
T ss_pred HHHHHHHhccchHHHHHHHHHhCCC-cchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 4555566666666666665554211 1123344555666666666655555555544433
No 437
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=53.15 E-value=1.1e+02 Score=24.00 Aligned_cols=79 Identities=18% Similarity=0.214 Sum_probs=39.6
Q ss_pred ChHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 004362 55 NFEEMENLLLEMRMDVDDSLLEGVHIGVMRNYGRRGKVQEAVDVFERMDFYNCEPTVLSYNTIMNILVEYGYFSQVHKVY 134 (759)
Q Consensus 55 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 134 (759)
.-++|..+.+=....+.. .+.+....+..+..+|+|+.|+.. ... ...||...|-++ +-.+.|-.+++...+
T Consensus 21 cH~EA~tIa~wL~~~~~~--~E~v~lIr~~sLmNrG~Yq~ALl~--~~~--~~~pdL~p~~AL--~a~klGL~~~~e~~l 92 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGEM--EEVVALIRLSSLMNRGDYQEALLL--PQC--HCYPDLEPWAAL--CAWKLGLASALESRL 92 (116)
T ss_dssp -HHHHHHHHHHHHHTTTT--HHHHHHHHHHHHHHTT-HHHHHHH--HTT--S--GGGHHHHHH--HHHHCT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcH--HHHHHHHHHHHHHhhHHHHHHHHh--ccc--CCCccHHHHHHH--HHHhhccHHHHHHHH
Confidence 455666665544444332 333444445566777777777221 111 125666666543 234667667777777
Q ss_pred HHHHHCC
Q 004362 135 MRMRNKG 141 (759)
Q Consensus 135 ~~~~~~~ 141 (759)
.++..+|
T Consensus 93 ~rla~~g 99 (116)
T PF09477_consen 93 TRLASSG 99 (116)
T ss_dssp HHHCT-S
T ss_pred HHHHhCC
Confidence 7666554
No 438
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=52.68 E-value=1.3e+02 Score=24.67 Aligned_cols=44 Identities=11% Similarity=0.158 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 004362 584 GAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYE 627 (759)
Q Consensus 584 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 627 (759)
++.++|+.|...+.-......|...+..+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 77777777776654555666677777777777777777777765
No 439
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=52.57 E-value=42 Score=20.11 Aligned_cols=15 Identities=13% Similarity=0.310 Sum_probs=5.8
Q ss_pred HHHHhcCChHHHHHH
Q 004362 645 DSFCKTGGINSGYCL 659 (759)
Q Consensus 645 ~~~~~~g~~~~A~~~ 659 (759)
..+...|++++|+.+
T Consensus 9 ~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 9 YNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHTT-HHHHHHH
T ss_pred HHHHHHhhHHHHHHH
Confidence 333444444444444
No 440
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.07 E-value=3.2e+02 Score=29.02 Aligned_cols=119 Identities=8% Similarity=0.033 Sum_probs=60.2
Q ss_pred hcCCHHHHHHHHHHHHHcC-----------CCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHH-------CCCCc-----
Q 004362 508 KAAKSEDVMETFKTMIEKR-----------CVPNIITYSILGESLCKAHKITEAFNLLEEMEN-------KGLTL----- 564 (759)
Q Consensus 508 ~~~~~~~a~~~~~~~~~~~-----------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~----- 564 (759)
....++++...|.-.+..- .+-...++..+...+..+|+.+.+..++++.+= ..+.|
T Consensus 250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~c 329 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNC 329 (665)
T ss_pred cchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccc
Confidence 3455677777776665531 111233455556666677777777777766541 01111
Q ss_pred --------cHHHHHH---HHHHHHccCChhhHHHHHHHHHHccCCCC-chhhHHHHHHHHH-hcCCHHHHHHHHHHH
Q 004362 565 --------DTVAFGT---LINGFCNSGDLDGAYQLFRRMEDQYKISH-TTATYNIMINAFS-EKLNFYMAEKLFYEM 628 (759)
Q Consensus 565 --------~~~~~~~---l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~~ 628 (759)
+...|.+ .+..+.+.|.+..|.++.+.+... .|. |+.....+++.|+ +..+|+=.+++++..
T Consensus 330 RL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsL--dp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 330 RLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSL--DPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred cCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 1111111 123334556666666666666555 444 5555555555444 344555555555554
No 441
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=51.54 E-value=2.4e+02 Score=27.54 Aligned_cols=91 Identities=13% Similarity=0.198 Sum_probs=59.3
Q ss_pred HHHHHHccCChhhHHHHHHHHHHccCC--CCchhhH--HHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCC-HhhHH
Q 004362 572 LINGFCNSGDLDGAYQLFRRMEDQYKI--SHTTATY--NIMINAFSEKLNFYMAEKLFYEMSE-----KGCPPD-NYTYR 641 (759)
Q Consensus 572 l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~-~~~~~ 641 (759)
++....+.++.++|+++++++.+.... .|+...| ..+++++...|+..++.+.+.+..+ .+++|+ ...|+
T Consensus 81 ~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY 160 (380)
T KOG2908|consen 81 LLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFY 160 (380)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHH
Confidence 344556677999999999998765432 2234444 4456788889999999999888776 577776 45566
Q ss_pred HHHHHHHh-cCChHHHHHHHHHHHh
Q 004362 642 IMIDSFCK-TGGINSGYCLLLENID 665 (759)
Q Consensus 642 ~l~~~~~~-~g~~~~A~~~~~~~~~ 665 (759)
.+..-|.+ .|+++ .+|..++.
T Consensus 161 ~lssqYyk~~~d~a---~yYr~~L~ 182 (380)
T KOG2908|consen 161 SLSSQYYKKIGDFA---SYYRHALL 182 (380)
T ss_pred HHHHHHHHHHHhHH---HHHHHHHH
Confidence 66654443 34442 34445444
No 442
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=50.32 E-value=46 Score=23.03 Aligned_cols=26 Identities=12% Similarity=-0.012 Sum_probs=13.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHH
Q 004362 639 TYRIMIDSFCKTGGINSGYCLLLENI 664 (759)
Q Consensus 639 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 664 (759)
-...++.++...|++++|.++++++.
T Consensus 25 NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 25 NHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33444455555555555555555544
No 443
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=48.90 E-value=4e+02 Score=29.30 Aligned_cols=189 Identities=14% Similarity=0.139 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHcCCCCC---hhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHH---------HHHHHHHHHHccC
Q 004362 513 EDVMETFKTMIEKRCVPN---IITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTV---------AFGTLINGFCNSG 580 (759)
Q Consensus 513 ~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------~~~~l~~~~~~~g 580 (759)
++-..++.+|.++--.|+ ..+...++-.|....+++..+++.+.+.+. +.+.. .|.-.++--.+-|
T Consensus 180 ~~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i--P~t~~vve~~nv~f~YaFALNRRNr~G 257 (1226)
T KOG4279|consen 180 DQLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI--PDTLKVVETHNVRFHYAFALNRRNRPG 257 (1226)
T ss_pred HHHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhC--cchhhhhccCceEEEeeehhcccCCCc
Confidence 444556677776522333 345666777777778888888888887763 21111 1222222223557
Q ss_pred ChhhHHHHHHHHHHccCCCCchhhHHHHHHH---------HHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC
Q 004362 581 DLDGAYQLFRRMEDQYKISHTTATYNIMINA---------FSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTG 651 (759)
Q Consensus 581 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~---------~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 651 (759)
+-++|+...-.+.+..+ |-.+..|...++. |...+..+.|+++|+++-+ +.|....=..+...+...|
T Consensus 258 DRakAL~~~l~lve~eg-~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG 334 (1226)
T KOG4279|consen 258 DRAKALNTVLPLVEKEG-PVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAG 334 (1226)
T ss_pred cHHHHHHHHHHHHHhcC-CCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhh
Confidence 77888877766665422 2223333333333 3456678889999999884 4676443333333333343
Q ss_pred C-hHHHHHHHHH------HH-hCCCCCCHHHHHH---HHHHHHhcCcHHHHHHHHHHHHHCCCCCchH
Q 004362 652 G-INSGYCLLLE------NI-DKGFIPSLSTIGR---VINCLCVDHRVHEAVGFVHLMVQKGIVPEVV 708 (759)
Q Consensus 652 ~-~~~A~~~~~~------~~-~~g~~p~~~~~~~---l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 708 (759)
. ++...++-.- ++ ++|---+-..|.. .+.+-.-++++.+|+..-+.|.. ++|.+|
T Consensus 335 ~~Fens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfK--Lk~P~W 400 (1226)
T KOG4279|consen 335 EHFENSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFK--LKPPVW 400 (1226)
T ss_pred hhccchHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhc--cCCcee
Confidence 2 3333322211 11 1221112122221 22222456888899988888876 777755
No 444
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=48.49 E-value=1.9e+02 Score=28.41 Aligned_cols=63 Identities=16% Similarity=0.079 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHcCCCCC----HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004362 618 FYMAEKLFYEMSEKGCPPD----NYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSLSTIGRVINCL 682 (759)
Q Consensus 618 ~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 682 (759)
.+++..++..+++. -|+ ...|.+++......|.+++.+.+|++++..|..|-...-..++..+
T Consensus 119 ~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL 185 (353)
T PF15297_consen 119 KEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDIL 185 (353)
T ss_pred HHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 44666677777654 345 3467778888888888888888888888888888665555555554
No 445
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=48.24 E-value=2.7e+02 Score=27.01 Aligned_cols=119 Identities=12% Similarity=0.162 Sum_probs=59.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCccH--HHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHH
Q 004362 536 ILGESLCKAHKITEAFNLLEEMENKGLTLDT--VAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFS 613 (759)
Q Consensus 536 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 613 (759)
.+..+..+.|+..+|.+.++.+.+. ++... .+...++.++....-+.+...++.+.-+. ..|.+.....+- ++.
T Consensus 280 RLAMCARklGrlrEA~K~~RDL~ke-~pl~t~lniheNLiEalLE~QAYADvqavLakYDdi-slPkSA~icYTa--ALL 355 (556)
T KOG3807|consen 280 RLAMCARKLGRLREAVKIMRDLMKE-FPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDI-SLPKSAAICYTA--ALL 355 (556)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhh-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cCcchHHHHHHH--HHH
Confidence 3444445677888888888777664 33211 12345666666665565555555444333 123222211110 111
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 004362 614 EKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSLSTIGR 677 (759)
Q Consensus 614 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ 677 (759)
++ +++...+.||...-..|..+ -..|++.+.++++ ++|..+.|..
T Consensus 356 ------K~-----RAVa~kFspd~asrRGLS~A------E~~AvEAihRAvE--FNPHVPkYLL 400 (556)
T KOG3807|consen 356 ------KT-----RAVSEKFSPETASRRGLSTA------EINAVEAIHRAVE--FNPHVPKYLL 400 (556)
T ss_pred ------HH-----HHHHhhcCchhhhhccccHH------HHHHHHHHHHHhh--cCCCCcHHHH
Confidence 11 12222345665544433322 1346778888888 7777666543
No 446
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=48.05 E-value=2.3e+02 Score=26.13 Aligned_cols=103 Identities=17% Similarity=0.244 Sum_probs=53.6
Q ss_pred hcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHH
Q 004362 543 KAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAE 622 (759)
Q Consensus 543 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 622 (759)
+..+.+--.++.+-....+++-+...+..++ +...||...|+..++.....++.-+...
T Consensus 171 klsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~en------------------- 229 (333)
T KOG0991|consen 171 KLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQEN------------------- 229 (333)
T ss_pred ccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhh-------------------
Confidence 3333333334444444445666666555554 5577899888888887766543322111
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 004362 623 KLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSL 672 (759)
Q Consensus 623 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 672 (759)
+|+-. + .|.+.....++..| ..+++++|.+.+.+.-+.|+.|.+
T Consensus 230 -VfKv~---d-~PhP~~v~~ml~~~-~~~~~~~A~~il~~lw~lgysp~D 273 (333)
T KOG0991|consen 230 -VFKVC---D-EPHPLLVKKMLQAC-LKRNIDEALKILAELWKLGYSPED 273 (333)
T ss_pred -hhhcc---C-CCChHHHHHHHHHH-HhccHHHHHHHHHHHHHcCCCHHH
Confidence 11111 1 45555444444433 345566666666666665555543
No 447
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.77 E-value=3.7e+02 Score=28.56 Aligned_cols=173 Identities=12% Similarity=0.030 Sum_probs=106.1
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCC------------CHHHHHHHHHHHHhcCCHHHHHHHHHH-------HHHcCCCCCh
Q 004362 471 YCKQLKMEIAIEILNTMWSHGVTP------------DVITYNSLLNGLCKAAKSEDVMETFKT-------MIEKRCVPNI 531 (759)
Q Consensus 471 ~~~~~~~~~A~~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~~~~~~a~~~~~~-------~~~~~~~~~~ 531 (759)
|.....+++|...|.-....- .| -+.+.-.+...+..+|+.+.|..+.++ ...-.+.|..
T Consensus 248 ~~hs~sYeqaq~~F~~av~~~-d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~s 326 (665)
T KOG2422|consen 248 FEHSNSYEQAQRDFYLAVIVH-DPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFS 326 (665)
T ss_pred eecchHHHHHHHHHHHHHhhc-CCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccc
Confidence 345667889988888776541 12 123344455667788887766555544 4433333322
Q ss_pred h-------------cHH---HHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHH-ccCChhhHHHHHHHHHH
Q 004362 532 I-------------TYS---ILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFC-NSGDLDGAYQLFRRMED 594 (759)
Q Consensus 532 ~-------------~~~---~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~ 594 (759)
- .|. .-++.+.+.|-+..|.++.+.+.+....-|+.....+|+.|. ++.++.--+++++....
T Consensus 327 g~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~ 406 (665)
T KOG2422|consen 327 GNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPEN 406 (665)
T ss_pred ccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 1 122 234556788999999999999998765557888888888774 67788888888888754
Q ss_pred ccCC--CCchhhHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHH
Q 004362 595 QYKI--SHTTATYNIMINAFSEKLN---FYMAEKLFYEMSEKGCPPDNYTYRIMIDSFC 648 (759)
Q Consensus 595 ~~~~--~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 648 (759)
..+. -|+...-..++..|.+... -..|...+.++... -+....-|+..+.
T Consensus 407 ~n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~----~P~vl~eLld~~~ 461 (665)
T KOG2422|consen 407 MNKLSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKH----HPLVLSELLDELL 461 (665)
T ss_pred hccHhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHh----CcHHHHHHHHhcc
Confidence 3222 2222222445566666554 45566666666643 2345555665444
No 448
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=47.67 E-value=1.8e+02 Score=25.64 Aligned_cols=20 Identities=20% Similarity=0.290 Sum_probs=10.1
Q ss_pred HHHHhcCChhHHHHHHHHhh
Q 004362 84 RNYGRRGKVQEAVDVFERMD 103 (759)
Q Consensus 84 ~~~~~~g~~~~A~~~~~~~~ 103 (759)
-.|.+.|.+++|.+++++.-
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~ 138 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLF 138 (200)
T ss_pred HHHHhcCchHHHHHHHHHHh
Confidence 34455555555555555544
No 449
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=47.47 E-value=55 Score=22.65 Aligned_cols=30 Identities=17% Similarity=0.315 Sum_probs=16.6
Q ss_pred cHHHHHHHHHHHHccCChhhHHHHHHHHHH
Q 004362 565 DTVAFGTLINGFCNSGDLDGAYQLFRRMED 594 (759)
Q Consensus 565 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 594 (759)
|......++.+|...|++++|.++++.+..
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 444444555666666666666666665544
No 450
>PHA02875 ankyrin repeat protein; Provisional
Probab=47.18 E-value=3.3e+02 Score=28.11 Aligned_cols=7 Identities=14% Similarity=-0.093 Sum_probs=2.8
Q ss_pred HHhcCCh
Q 004362 226 LCKKGNV 232 (759)
Q Consensus 226 ~~~~g~~ 232 (759)
.+..|+.
T Consensus 42 A~~~~~~ 48 (413)
T PHA02875 42 AMKFRDS 48 (413)
T ss_pred HHHcCCH
Confidence 3344443
No 451
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=46.75 E-value=3.4e+02 Score=27.76 Aligned_cols=62 Identities=10% Similarity=0.062 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhcC------CCCccHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 004362 42 TYKYMIDKLGFHGNFEEMENLLLEMRMDV------DDSLLEGVHIGVMRNYGRRGKVQEAVDVFERMD 103 (759)
Q Consensus 42 ~~~~l~~~l~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 103 (759)
+...++++.+-.|++..|++.++.+--.. .++....+++-++.+|...+++.+|++.|..+.
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34446666677888888888877553221 112244567778888888888888888887765
No 452
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.67 E-value=1.7e+02 Score=31.25 Aligned_cols=87 Identities=13% Similarity=0.116 Sum_probs=62.7
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCccH------HHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhc
Q 004362 542 CKAHKITEAFNLLEEMENKGLTLDT------VAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEK 615 (759)
Q Consensus 542 ~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 615 (759)
.+..++..+.++|..-... ++.|. .....+.-+|....++|.|.++++++.+. .|.++-.-..+..+....
T Consensus 365 F~~~~Y~~s~~~y~~Sl~~-i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~--d~~~~l~q~~~~~~~~~E 441 (872)
T KOG4814|consen 365 FKMEKYVVSIRFYKLSLKD-IISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEV--DRQSPLCQLLMLQSFLAE 441 (872)
T ss_pred HHHHHHHHHHHHHHHHHHh-ccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh--ccccHHHHHHHHHHHHHh
Confidence 4566788888888776654 44343 23456666777888888888888888877 666666666677777788
Q ss_pred CCHHHHHHHHHHHHHc
Q 004362 616 LNFYMAEKLFYEMSEK 631 (759)
Q Consensus 616 g~~~~A~~~~~~~~~~ 631 (759)
|+-++|+.........
T Consensus 442 ~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 442 DKSEEALTCLQKIKSS 457 (872)
T ss_pred cchHHHHHHHHHHHhh
Confidence 8888888888777654
No 453
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=46.23 E-value=3.5e+02 Score=27.84 Aligned_cols=54 Identities=15% Similarity=0.098 Sum_probs=26.8
Q ss_pred HHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 004362 226 LCKKGNVRESEKLFNKVLKRGVSPNLFTFNMFIQGLCRKGAISEAISLLDSLGRE 280 (759)
Q Consensus 226 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 280 (759)
....|+++.+.+.+...... +.....+...+++...+.|.++.|..+-.-|...
T Consensus 333 ~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~ 386 (831)
T PRK15180 333 FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSN 386 (831)
T ss_pred HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhcc
Confidence 34455555555555443322 2223334455555555555556555555555543
No 454
>PHA02875 ankyrin repeat protein; Provisional
Probab=46.16 E-value=3.5e+02 Score=27.85 Aligned_cols=76 Identities=21% Similarity=0.267 Sum_probs=35.6
Q ss_pred HHccCChhhHHHHHhhchhCCCCCCHHh--HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh--hHHHHHHHHHhcCC
Q 004362 156 FCRTRRPHVALRLLKNMPSQGFEPNAVA--YCTLIAGFYEENHNVEAYELFDEMLGMGISPDIA--TFNKLIHTLCKKGN 231 (759)
Q Consensus 156 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~ 231 (759)
.+..|+.+.+..+++ .|..++... ..+.+...+..|+.+ +.+.+.+.|..|+.. .....+...+..|+
T Consensus 9 A~~~g~~~iv~~Ll~----~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~ 80 (413)
T PHA02875 9 AILFGELDIARRLLD----IGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGD 80 (413)
T ss_pred HHHhCCHHHHHHHHH----CCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCC
Confidence 345677766555554 344444321 233344445555543 344445555444422 11223444555666
Q ss_pred hhHHHHHH
Q 004362 232 VRESEKLF 239 (759)
Q Consensus 232 ~~~a~~~~ 239 (759)
.+.+..++
T Consensus 81 ~~~v~~Ll 88 (413)
T PHA02875 81 VKAVEELL 88 (413)
T ss_pred HHHHHHHH
Confidence 65544444
No 455
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=46.05 E-value=49 Score=19.21 Aligned_cols=13 Identities=0% Similarity=-0.044 Sum_probs=6.0
Q ss_pred hHHHHHHHHHHHh
Q 004362 653 INSGYCLLLENID 665 (759)
Q Consensus 653 ~~~A~~~~~~~~~ 665 (759)
++.|..+|++.+.
T Consensus 3 ~dRAR~IyeR~v~ 15 (32)
T PF02184_consen 3 FDRARSIYERFVL 15 (32)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444444
No 456
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.60 E-value=1.4e+02 Score=22.96 Aligned_cols=52 Identities=8% Similarity=-0.027 Sum_probs=29.6
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 004362 623 KLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCLLLENIDKGFIPSLSTIG 676 (759)
Q Consensus 623 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 676 (759)
+.++++..++.+.-+.....|+-.|+..|+-+.|.+-|+.-.. +.|.+..+.
T Consensus 58 ~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKa--lFPES~~fm 109 (121)
T COG4259 58 KYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKA--LFPESGVFM 109 (121)
T ss_pred HHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhh--hCccchhHH
Confidence 3344444443322233344455667777777777777776555 667665543
No 457
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.08 E-value=1.4e+02 Score=22.92 Aligned_cols=46 Identities=20% Similarity=0.104 Sum_probs=26.3
Q ss_pred HHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHc
Q 004362 550 AFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQ 595 (759)
Q Consensus 550 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 595 (759)
-.+.++++...+....+.....+.-.|.+.|+.+.|.+-|+.-...
T Consensus 56 le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKal 101 (121)
T COG4259 56 LEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKAL 101 (121)
T ss_pred HHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhh
Confidence 3444555554443333344445555677777777777777666555
No 458
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=44.28 E-value=5.1e+02 Score=29.19 Aligned_cols=46 Identities=9% Similarity=0.028 Sum_probs=21.9
Q ss_pred hhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004362 582 LDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMS 629 (759)
Q Consensus 582 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 629 (759)
.++..+.++.+....+..-+......++ ....|+...|+.+++++.
T Consensus 180 ~eeIv~~L~~Il~~EgI~id~eAL~lIA--~~A~GsmRdALsLLdQAi 225 (830)
T PRK07003 180 AGHIVSHLERILGEERIAFEPQALRLLA--RAAQGSMRDALSLTDQAI 225 (830)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHH--HHcCCCHHHHHHHHHHHH
Confidence 3445555555554323332333322222 223566777777666654
No 459
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=44.28 E-value=88 Score=29.76 Aligned_cols=57 Identities=14% Similarity=0.092 Sum_probs=48.2
Q ss_pred HHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 004362 576 FCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPD 636 (759)
Q Consensus 576 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 636 (759)
..+.|+.++|..+|+.+... .|.++.+...++......++.-+|-++|-+++. +.|.
T Consensus 126 ~~~~Gk~ekA~~lfeHAlal--aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALt--isP~ 182 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALAL--APTNPQILIEMGQFREMHNEIVEADQCYVKALT--ISPG 182 (472)
T ss_pred HHhccchHHHHHHHHHHHhc--CCCCHHHHHHHhHHHHhhhhhHhhhhhhheeee--eCCC
Confidence 45789999999999999988 888999999999888888889999999888873 4554
No 460
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=42.58 E-value=30 Score=28.27 Aligned_cols=39 Identities=13% Similarity=0.069 Sum_probs=30.5
Q ss_pred hHHHHHhc-----cccccccchHHHHHHHhcCCCchHHHHHHHh
Q 004362 707 VVNTIFEA-----DKREVASPKIVVEDLLKKSHITYYAYELLFD 745 (759)
Q Consensus 707 ~~~~~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 745 (759)
+...|+.. +.|...+|+.+|++|++.|..||+-..||..
T Consensus 94 Iv~aWvNDe~tlR~ygsk~DaY~VF~kML~~G~pPddW~~Ll~~ 137 (140)
T PF11663_consen 94 IVYAWVNDEQTLRAYGSKTDAYAVFRKMLERGNPPDDWDALLKE 137 (140)
T ss_pred EEEEEeCCCcchhhhccCCcHHHHHHHHHhCCCCCccHHHHHHH
Confidence 44556653 6788899999999999999999986556553
No 461
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=42.29 E-value=84 Score=26.54 Aligned_cols=53 Identities=13% Similarity=0.046 Sum_probs=29.0
Q ss_pred HHHHHHHCCCCCc-hHHHHHhc--cccccccchHHHHHHHhcCCC--chHHHHHHHhh
Q 004362 694 FVHLMVQKGIVPE-VVNTIFEA--DKREVASPKIVVEDLLKKSHI--TYYAYELLFDG 746 (759)
Q Consensus 694 ~~~~~~~~~~~p~-~~~~~~~~--~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~ 746 (759)
+.+.+.+.|+++. ....++.. .++.+-.|..+++++.+.+|. +.|.|+.|...
T Consensus 8 ~~~~lk~~glr~T~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l 65 (145)
T COG0735 8 AIERLKEAGLRLTPQRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLL 65 (145)
T ss_pred HHHHHHHcCCCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHH
Confidence 3444555666665 33334444 344447777777777776554 45666555433
No 462
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=42.26 E-value=59 Score=30.97 Aligned_cols=74 Identities=11% Similarity=0.101 Sum_probs=57.3
Q ss_pred CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHH-HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH
Q 004362 598 ISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRI-MIDSFCKTGGINSGYCLLLENIDKGFIPSLST 674 (759)
Q Consensus 598 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 674 (759)
.|.|+..|...+.--...|.+.+.-.++.++.+.. |.|...|.. -..-+...++++.+..+|.+.++ +.|+.+.
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~kh-P~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR--~N~~~p~ 177 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKH-PLNVDLWIYCCAFELFEIANIESSRAMFLKGLR--MNSRSPR 177 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCceeeeeeccchhhhhccHHHHHHHHHhhhc--cCCCCch
Confidence 67788888888877777788999999999998763 445666644 23356778999999999999999 7676443
No 463
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=41.84 E-value=3.1e+02 Score=26.03 Aligned_cols=27 Identities=19% Similarity=0.111 Sum_probs=19.9
Q ss_pred ccHHHHHHHHHHHHccCChhhHHHHHH
Q 004362 564 LDTVAFGTLINGFCNSGDLDGAYQLFR 590 (759)
Q Consensus 564 ~~~~~~~~l~~~~~~~g~~~~A~~~~~ 590 (759)
-|+.....++..|.+.|++.+|...|-
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 467778888888999999988887773
No 464
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=40.95 E-value=1.9e+02 Score=23.28 Aligned_cols=87 Identities=10% Similarity=-0.008 Sum_probs=50.3
Q ss_pred hcCCHHHHHHHHHHHHH--cCCCCC---------HhhHHHHHHHHHhcCChHHHHHHHHHHHhC----C-CCCCHHH-HH
Q 004362 614 EKLNFYMAEKLFYEMSE--KGCPPD---------NYTYRIMIDSFCKTGGINSGYCLLLENIDK----G-FIPSLST-IG 676 (759)
Q Consensus 614 ~~g~~~~A~~~~~~~~~--~~~~p~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g-~~p~~~~-~~ 676 (759)
..|-+++|..-++++.+ +.+||. ..++..|..++...|+|++++.-.++++.. | +.-+.-. |.
T Consensus 21 ~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWI 100 (144)
T PF12968_consen 21 QDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWI 100 (144)
T ss_dssp HHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHH
Confidence 34566666666665543 233432 345667778889999998887776666531 2 3433322 21
Q ss_pred H----HHHHHHhcCcHHHHHHHHHHHHH
Q 004362 677 R----VINCLCVDHRVHEAVGFVHLMVQ 700 (759)
Q Consensus 677 ~----l~~~~~~~g~~~~A~~~~~~~~~ 700 (759)
. -..++-..|+.++|++.|+...+
T Consensus 101 aaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 101 AAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 1 12233567999999999988654
No 465
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.83 E-value=5.8e+02 Score=28.85 Aligned_cols=319 Identities=11% Similarity=0.041 Sum_probs=0.0
Q ss_pred HHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChh
Q 004362 84 RNYGRRGKVQEAVDVFERMDFYNCEPTVLSYNTIMNILVEYGYFSQVHKVYMRMRNKGIVPDVYTFVIRIKSFCRTRRPH 163 (759)
Q Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 163 (759)
+.|...|+|++|++.-..-+ ..-.-.+..-...|.+.+++..|-++|.++.+ .|..+.--+....+.+
T Consensus 366 k~yLd~g~y~kAL~~ar~~p----~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~--------~FEEVaLKFl~~~~~~ 433 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIARTRP----DALETVLLKQADFLFQDKEYLRAAEIYAETLS--------SFEEVALKFLEINQER 433 (911)
T ss_pred HHHHhcchHHHHHHhccCCH----HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh--------hHHHHHHHHHhcCCHH
Q ss_pred hHHHHHhhchhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHh
Q 004362 164 VALRLLKNMPSQGFEPNAVAYCTLIAGFYEENHNVEAYELFDEMLGMGISPDIATFNKLIHTLCKKGNVRESEKLFNKVL 243 (759)
Q Consensus 164 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 243 (759)
.-..++.+-.++ ++|...+-..++..+.-.-..++--++- .+|.......-..+ +...+-|....
T Consensus 434 ~L~~~L~KKL~~-lt~~dk~q~~~Lv~WLlel~L~~Ln~l~--------~~de~~~en~~~~~------~~~~re~~~~~ 498 (911)
T KOG2034|consen 434 ALRTFLDKKLDR-LTPEDKTQRDALVTWLLELYLEQLNDLD--------STDEEALENWRLEY------DEVQREFSKFL 498 (911)
T ss_pred HHHHHHHHHHhh-CChHHHHHHHHHHHHHHHHHHHHHhccc--------ccChhHHHHHHHHH------HHHHHHHHHHH
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhc
Q 004362 244 KRGVSPNLFTFNMFIQGLCRKGAISEAISLLDSLGREDLTPDVVTYNTLMCGLCKNSKVVEAEYYLHKMVNEGLEPDGFS 323 (759)
Q Consensus 244 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 323 (759)
.. ..+.....+..+.+...|+.+....+-.-+.. |..++..+++.+.+++|++++..-. +..+
T Consensus 499 ~~--~~~~~nretv~~l~~~~~~~e~ll~fA~l~~d---------~~~vv~~~~q~e~yeeaLevL~~~~------~~el 561 (911)
T KOG2034|consen 499 VL--HKDELNRETVYQLLASHGRQEELLQFANLIKD---------YEFVVSYWIQQENYEEALEVLLNQR------NPEL 561 (911)
T ss_pred Hh--hHHhhhHHHHHHHHHHccCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHhcc------chhh
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhc---CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 004362 324 YNAVIDGYCKAGMISSADKILNDAIFKGFVPDEFTYCSLINGLCQD---GDVDRAMAVYVKALEKGLKPSIVLYNTLIKG 400 (759)
Q Consensus 324 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 400 (759)
+-...-.... ....+..+.....+-..+......++..+.+. .+...+...++-....-..-++..+|.++..
T Consensus 562 ~yk~ap~Li~----~~p~~tV~~wm~~~d~~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~l 637 (911)
T KOG2034|consen 562 FYKYAPELIT----HSPKETVSAWMAQKDLDPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHL 637 (911)
T ss_pred HHHhhhHHHh----cCcHHHHHHHHHccccCchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHH
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 004362 401 LSQQGLILQALQLMNEMSESGCCPDMWTYNIVINGLCKMGCVSDANNLVNDA 452 (759)
Q Consensus 401 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 452 (759)
|....+-+.-..+-......+. ..+-....++.|.+.+....+..++..+
T Consensus 638 ya~~~~~~ll~~le~~~~~~~~--~~YDl~~alRlc~~~~~~ra~V~l~~~l 687 (911)
T KOG2034|consen 638 YAKHERDDLLLYLEIIKFMKSR--VHYDLDYALRLCLKFKKTRACVFLLCML 687 (911)
T ss_pred hhcCCccchHHHHHHHhhcccc--ceecHHHHHHHHHHhCccceeeeHHHHH
No 466
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=40.34 E-value=1.2e+02 Score=28.44 Aligned_cols=24 Identities=13% Similarity=0.163 Sum_probs=12.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHH
Q 004362 639 TYRIMIDSFCKTGGINSGYCLLLE 662 (759)
Q Consensus 639 ~~~~l~~~~~~~g~~~~A~~~~~~ 662 (759)
+...+..++...|+.+..+.+.-+
T Consensus 220 ~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 220 VLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHH
Confidence 334444555555665555554433
No 467
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.22 E-value=94 Score=34.43 Aligned_cols=131 Identities=15% Similarity=0.119 Sum_probs=86.4
Q ss_pred HHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChH
Q 004362 575 GFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGIN 654 (759)
Q Consensus 575 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 654 (759)
.+..+|+++.|++.-+++ ++...|..|+.....+|+.+-|...|++.. .|..|.-.|.-.|+.+
T Consensus 652 LaLe~gnle~ale~akkl-------dd~d~w~rLge~Al~qgn~~IaEm~yQ~~k---------nfekLsfLYliTgn~e 715 (1202)
T KOG0292|consen 652 LALECGNLEVALEAAKKL-------DDKDVWERLGEEALRQGNHQIAEMCYQRTK---------NFEKLSFLYLITGNLE 715 (1202)
T ss_pred eehhcCCHHHHHHHHHhc-------CcHHHHHHHHHHHHHhcchHHHHHHHHHhh---------hhhheeEEEEEeCCHH
Confidence 345678888888776554 356789999999999999999988888765 2344555677789888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCchHHHHHhc-cccccccchHHHHHHHhcC
Q 004362 655 SGYCLLLENIDKGFIPSLSTIGRVINCLCVDHRVHEAVGFVHLMVQKGIVPEVVNTIFEA-DKREVASPKIVVEDLLKKS 733 (759)
Q Consensus 655 ~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~a~~~~~~~~~~~ 733 (759)
+-.++.+.+..+ -|.. ..... ..-.|+.++-.++++.. |..|- .++.+ .+|.-++|.++.+++-+.+
T Consensus 716 KL~Km~~iae~r---~D~~--~~~qn-alYl~dv~ervkIl~n~---g~~~l---aylta~~~G~~~~ae~l~ee~~~~~ 783 (1202)
T KOG0292|consen 716 KLSKMMKIAEIR---NDAT--GQFQN-ALYLGDVKERVKILENG---GQLPL---AYLTAAAHGLEDQAEKLGEELEKQV 783 (1202)
T ss_pred HHHHHHHHHHhh---hhhH--HHHHH-HHHhccHHHHHHHHHhc---CcccH---HHHHHhhcCcHHHHHHHHHhhcccc
Confidence 877766655431 1211 11222 22367888777776553 33332 23444 7888888999888887743
No 468
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=40.05 E-value=54 Score=29.78 Aligned_cols=61 Identities=11% Similarity=0.047 Sum_probs=50.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchh
Q 004362 540 SLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTA 603 (759)
Q Consensus 540 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 603 (759)
.....++.+.+.+++.+.... .+.....|..+...-.++|+++.|.+.|++..+. .|++..
T Consensus 4 ~~~~~~D~~aaaely~qal~l-ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l--dp~D~~ 64 (287)
T COG4976 4 MLAESGDAEAAAELYNQALEL-APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL--DPEDHG 64 (287)
T ss_pred hhcccCChHHHHHHHHHHhhc-CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcC--Cccccc
Confidence 345678899999999999876 4556677888888889999999999999999988 676643
No 469
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=39.89 E-value=2.8e+02 Score=28.20 Aligned_cols=33 Identities=12% Similarity=0.023 Sum_probs=19.6
Q ss_pred CCCCHHHHH--HHHHHH--HhcCcHHHHHHHHHHHHH
Q 004362 668 FIPSLSTIG--RVINCL--CVDHRVHEAVGFVHLMVQ 700 (759)
Q Consensus 668 ~~p~~~~~~--~l~~~~--~~~g~~~~A~~~~~~~~~ 700 (759)
..|....+. .++... +++|+.++|.+.++....
T Consensus 259 ~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~ 295 (568)
T KOG2561|consen 259 QSPERALILRLELLQGVVAYHQGQRDEAYEALESAHA 295 (568)
T ss_pred CChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 345544442 233332 678888888888777643
No 470
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=39.52 E-value=1.3e+02 Score=28.38 Aligned_cols=78 Identities=8% Similarity=0.069 Sum_probs=51.1
Q ss_pred HHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhC----C-CCCCHHHHHHHHHHHHHcCChhHHHH
Q 004362 58 EMENLLLEMRMDVDDSLLEGVHIGVMRNYGRRGKVQEAVDVFERMDFY----N-CEPTVLSYNTIMNILVEYGYFSQVHK 132 (759)
Q Consensus 58 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~ 132 (759)
.|...|..... ......+...+++.|.+.|++++|.++|+.+... | ..........+..++.+.|+.+..+.
T Consensus 163 ~A~~~f~~~~~---~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~ 239 (247)
T PF11817_consen 163 KAYEQFKKYGQ---NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLT 239 (247)
T ss_pred HHHHHHHHhcc---chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 35555554433 2124456667889999999999999999887522 1 11234455667778888888888877
Q ss_pred HHHHHH
Q 004362 133 VYMRMR 138 (759)
Q Consensus 133 ~~~~~~ 138 (759)
+.-++.
T Consensus 240 ~~leLl 245 (247)
T PF11817_consen 240 TSLELL 245 (247)
T ss_pred HHHHHh
Confidence 766654
No 471
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=39.45 E-value=4e+02 Score=31.56 Aligned_cols=131 Identities=14% Similarity=0.052 Sum_probs=67.2
Q ss_pred ChhcHHHHHHHHHhcCCHHHHHHHHHHHH-------HCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHcc------
Q 004362 530 NIITYSILGESLCKAHKITEAFNLLEEME-------NKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQY------ 596 (759)
Q Consensus 530 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------ 596 (759)
....|..+...+.+.|+.++|+.+-.... ....+-+...|..+...+...++...|...+.+.....
T Consensus 972 ~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge 1051 (1236)
T KOG1839|consen 972 VASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGE 1051 (1236)
T ss_pred HHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCC
Confidence 44456666666677777777666544332 12222233345555545555556666666666655422
Q ss_pred CCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CC---CCHhhHHHHHHHHHhcCChHHHHHHH
Q 004362 597 KISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKG----CP---PDNYTYRIMIDSFCKTGGINSGYCLL 660 (759)
Q Consensus 597 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~---p~~~~~~~l~~~~~~~g~~~~A~~~~ 660 (759)
..|+...+.+.+...+...++++.|+++.+.+.... .+ +...++..+...+...+++..|+...
T Consensus 1052 ~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~e 1122 (1236)
T KOG1839|consen 1052 DHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHE 1122 (1236)
T ss_pred CCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHH
Confidence 134444444555555555566666666666665421 01 11334444555555555555544433
No 472
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.98 E-value=1e+02 Score=34.24 Aligned_cols=156 Identities=13% Similarity=0.038 Sum_probs=99.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCC
Q 004362 502 LLNGLCKAAKSEDVMETFKTMIEKRCVPNIITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGD 581 (759)
Q Consensus 502 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 581 (759)
+|..+.+.|-++-|+.+.+ |..+- ...+...|+.+.|.+.-..+ .+..+|..|+..-.+.|+
T Consensus 626 iIaYLqKkgypeiAL~FVk---------D~~tR---F~LaLe~gnle~ale~akkl------dd~d~w~rLge~Al~qgn 687 (1202)
T KOG0292|consen 626 IIAYLQKKGYPEIALHFVK---------DERTR---FELALECGNLEVALEAAKKL------DDKDVWERLGEEALRQGN 687 (1202)
T ss_pred HHHHHHhcCCcceeeeeec---------Ccchh---eeeehhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHhcc
Confidence 3434455666666655432 23332 23445679999888765543 378899999999999999
Q ss_pred hhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHH
Q 004362 582 LDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKTGGINSGYCLLL 661 (759)
Q Consensus 582 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 661 (759)
.+-|...|++...- ..+.-.|.-.|+.++-.++.+.+..+ .|..+.. .. -.-.|+.++=.++++
T Consensus 688 ~~IaEm~yQ~~knf----------ekLsfLYliTgn~eKL~Km~~iae~r---~D~~~~~--qn-alYl~dv~ervkIl~ 751 (1202)
T KOG0292|consen 688 HQIAEMCYQRTKNF----------EKLSFLYLITGNLEKLSKMMKIAEIR---NDATGQF--QN-ALYLGDVKERVKILE 751 (1202)
T ss_pred hHHHHHHHHHhhhh----------hheeEEEEEeCCHHHHHHHHHHHHhh---hhhHHHH--HH-HHHhccHHHHHHHHH
Confidence 99999999887543 44555677789999988888877543 3433221 11 123577777666655
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 004362 662 ENIDKGFIPSLSTIGRVINCLCVDHRVHEAVGFVHLMVQ 700 (759)
Q Consensus 662 ~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 700 (759)
.. |.-|- .| ..-...|.-++|.++.++.-.
T Consensus 752 n~---g~~~l--ay----lta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 752 NG---GQLPL--AY----LTAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred hc---CcccH--HH----HHHhhcCcHHHHHHHHHhhcc
Confidence 42 22231 11 112357888888888888765
No 473
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=38.54 E-value=2.4e+02 Score=33.17 Aligned_cols=129 Identities=14% Similarity=0.033 Sum_probs=88.3
Q ss_pred HHHHHHhcCCHHHHHH------HHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHH------ccCCCCchhh
Q 004362 537 LGESLCKAHKITEAFN------LLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMED------QYKISHTTAT 604 (759)
Q Consensus 537 l~~~~~~~~~~~~a~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~~ 604 (759)
-.+.....|.+.++.+ ++......-.+.....|..+...+.+.|+.++|+..-....- ....|.+...
T Consensus 938 ~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~ 1017 (1236)
T KOG1839|consen 938 QGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLA 1017 (1236)
T ss_pred hhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHH
Confidence 3444555667776666 555444333455677788999999999999999887655432 1134556777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCC-HhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004362 605 YNIMINAFSEKLNFYMAEKLFYEMSEK-----G-CPPD-NYTYRIMIDSFCKTGGINSGYCLLLENID 665 (759)
Q Consensus 605 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 665 (759)
|..+.-.....++...|...+.++... | ..|. ..+...+...+...++++.|+++.+.+.+
T Consensus 1018 y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a 1085 (1236)
T KOG1839|consen 1018 YGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALA 1085 (1236)
T ss_pred hhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 777877777777888888888776543 1 1333 44556665566667899999999999876
No 474
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=38.31 E-value=6.2e+02 Score=28.41 Aligned_cols=83 Identities=12% Similarity=0.060 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHcCCCCChhcHHHHHHHH-HhcCCHHHHHHHHHHHHHCCCCccHH-HHHHHHHHHHccCChhhHHHHH
Q 004362 512 SEDVMETFKTMIEKRCVPNIITYSILGESL-CKAHKITEAFNLLEEMENKGLTLDTV-AFGTLINGFCNSGDLDGAYQLF 589 (759)
Q Consensus 512 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~ 589 (759)
+..|...|.........+...+........ ...++.+.+..+++.....|.. +.. .|...+..-...|+...+..++
T Consensus 442 F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~-~iag~Wle~~~lE~~~g~~~~~R~~~ 520 (881)
T KOG0128|consen 442 FNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGG-SIAGKWLEAINLEREYGDGPSARKVL 520 (881)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcc-hHHHHHHHHHhHHHHhCCchhHHHHH
Confidence 344555555444332122222233333332 2356777788888777765422 222 5555555556667777777777
Q ss_pred HHHHHc
Q 004362 590 RRMEDQ 595 (759)
Q Consensus 590 ~~~~~~ 595 (759)
+.+...
T Consensus 521 R~ay~~ 526 (881)
T KOG0128|consen 521 RKAYSQ 526 (881)
T ss_pred HHHHhc
Confidence 766655
No 475
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=37.85 E-value=7.4e+02 Score=29.19 Aligned_cols=117 Identities=12% Similarity=0.088 Sum_probs=59.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhh-----------------------CCCCCC-----HHHHHHHHHHHHHcCChhH
Q 004362 78 VHIGVMRNYGRRGKVQEAVDVFERMDF-----------------------YNCEPT-----VLSYNTIMNILVEYGYFSQ 129 (759)
Q Consensus 78 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------------------~~~~~~-----~~~~~~l~~~~~~~~~~~~ 129 (759)
....++.+|...|...+|+.+|.++.. .|-.+. ..-|..+++.+-+.+-.+.
T Consensus 922 ~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~ 1001 (1480)
T KOG4521|consen 922 IRFMLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEE 1001 (1480)
T ss_pred HHHhhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHH
Confidence 334455666667777777766665431 111111 1224455666666666666
Q ss_pred HHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCChhhHHHHHhhchhCCCCCCHHhHHHHHHHHHhcCCh
Q 004362 130 VHKVYMRMRNKGIVPD----VYTFVIRIKSFCRTRRPHVALRLLKNMPSQGFEPNAVAYCTLIAGFYEENHN 197 (759)
Q Consensus 130 a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 197 (759)
+.++-...++.- +++ ..+++++.+.....|.+-+|...+-+-+... ........++..++.+|.+
T Consensus 1002 vcQlA~~AIe~l-~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npdse--rrrdcLRqlvivLfecg~l 1070 (1480)
T KOG4521|consen 1002 VCQLAVKAIENL-PDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDSE--RRRDCLRQLVIVLFECGEL 1070 (1480)
T ss_pred HHHHHHHHHHhC-CCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcHH--HHHHHHHHHHHHHHhccch
Confidence 666666666541 121 3345556666666666666665553332211 1123344445555555544
No 476
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.82 E-value=2.4e+02 Score=30.29 Aligned_cols=96 Identities=13% Similarity=0.169 Sum_probs=67.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh------hcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHH
Q 004362 498 TYNSLLNGLCKAAKSEDVMETFKTMIEKRCVPNI------ITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGT 571 (759)
Q Consensus 498 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 571 (759)
.|+.... ..+..++..+++.|..-... ++.|. ..+..+.-+|....+.|.|.++++++.+.+ +.++..-..
T Consensus 357 LWn~A~~-~F~~~~Y~~s~~~y~~Sl~~-i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d-~~~~l~q~~ 433 (872)
T KOG4814|consen 357 LWNTAKK-LFKMEKYVVSIRFYKLSLKD-IISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD-RQSPLCQLL 433 (872)
T ss_pred HHHhhHH-HHHHHHHHHHHHHHHHHHHh-ccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc-cccHHHHHH
Confidence 4555443 34667888999988877664 22222 235566667778889999999999999862 334444445
Q ss_pred HHHHHHccCChhhHHHHHHHHHHcc
Q 004362 572 LINGFCNSGDLDGAYQLFRRMEDQY 596 (759)
Q Consensus 572 l~~~~~~~g~~~~A~~~~~~~~~~~ 596 (759)
+..+....|.-++|+..........
T Consensus 434 ~~~~~~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 434 MLQSFLAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhhh
Confidence 5566778899999999998887663
No 477
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=37.10 E-value=2.4e+02 Score=23.34 Aligned_cols=97 Identities=14% Similarity=0.073 Sum_probs=0.0
Q ss_pred HHHHHHhcC-CCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 004362 62 LLLEMRMDV-DDSLLEGVHIGVMRNYGRRGKVQEAVDVFERMDFYNCEPTVLSYNTIMNILVEYGYFSQVHKVYMRMRNK 140 (759)
Q Consensus 62 ~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 140 (759)
+.+..+..+ +. ..+++..++.-....|+++.|+++.+.+...| .+-+..|+.=...+. .++..+......+.
T Consensus 35 ~v~g~L~~g~g~--qd~Vl~~~mvW~~D~Gd~~~AL~~a~yAi~~~-l~~P~~f~R~~~t~v----aeev~~~a~~~~~~ 107 (132)
T PF05944_consen 35 WVEGVLASGSGA--QDDVLMTVMVWLFDVGDFDGALDIAEYAIEHG-LPMPDRFKRTLPTFV----AEEVADWALRAAKA 107 (132)
T ss_pred HHHHHHHcCCCC--cCchHHhhHhhhhcccCHHHHHHHHHHHHHcC-CCccccccCcchHHH----HHHHHHHHHHHHHc
Q ss_pred CCCCCHHHHHHHHHHHHccCChhhH
Q 004362 141 GIVPDVYTFVIRIKSFCRTRRPHVA 165 (759)
Q Consensus 141 ~~~~~~~~~~~l~~~~~~~~~~~~A 165 (759)
|.+.+...+......-....-++++
T Consensus 108 g~~~~~~~l~~~~~l~~~~dmpd~v 132 (132)
T PF05944_consen 108 GQSFEPYFLSRVFELTADQDMPDQV 132 (132)
T ss_pred CCCCChHHHHHHHHHHccCCCCCCC
No 478
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=36.99 E-value=3e+02 Score=29.71 Aligned_cols=91 Identities=14% Similarity=0.112 Sum_probs=54.6
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCCC--CCCcccHHHHHHHHHhcCCHH------HHHHHHHHHHHcCCCCCHHhHHHH
Q 004362 326 AVIDGYCKAGMISSADKILNDAIFKGF--VPDEFTYCSLINGLCQDGDVD------RAMAVYVKALEKGLKPSIVLYNTL 397 (759)
Q Consensus 326 ~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~------~A~~~~~~~~~~~~~~~~~~~~~l 397 (759)
+++.+|..+|++..+.++++.....+- ..-...+|..++.+.+.|.++ .|.+.++... +.-|..+|..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 788889999999999988888876531 122345667777777777653 3333443333 34466777776
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 004362 398 IKGLSQQGLILQALQLMNEMSE 419 (759)
Q Consensus 398 ~~~~~~~~~~~~a~~~~~~~~~ 419 (759)
+.+-..-.+-.-.+-++.++..
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH
Confidence 6655443333333344444443
No 479
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=36.94 E-value=63 Score=32.71 Aligned_cols=60 Identities=12% Similarity=0.115 Sum_probs=33.1
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCC-ccHHHHHHHHHHHHccCChhhHHHHHHHH
Q 004362 533 TYSILGESLCKAHKITEAFNLLEEMENK------GLT-LDTVAFGTLINGFCNSGDLDGAYQLFRRM 592 (759)
Q Consensus 533 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 592 (759)
+...+++..+-.|++..|+++++.+.-. .++ -...++..++-+|...+++.+|++.|..+
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666677777777776665321 011 12234555566666666666666666544
No 480
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=36.62 E-value=2e+02 Score=22.31 Aligned_cols=79 Identities=14% Similarity=0.166 Sum_probs=42.0
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHhhchhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHH
Q 004362 126 YFSQVHKVYMRMRNKGIVPDVYTFVIRIKSFCRTRRPHVALRLLKNMPSQGFEPNAVAYCTLIAGFYEENHNVEAYELFD 205 (759)
Q Consensus 126 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 205 (759)
..++|..+-+.+...+-. ...+-.+.+..+...|+|++|..+.+... .||...|.++.. .+.|-.+++..-+.
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~----~pdlepw~ALce--~rlGl~s~l~~rl~ 92 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLC----YPDLEPWLALCE--WRLGLGSALESRLN 92 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCC----CchHHHHHHHHH--HhhccHHHHHHHHH
Confidence 345555555555443211 22222233344566777777777766652 467777766654 34555555555555
Q ss_pred HHHhCC
Q 004362 206 EMLGMG 211 (759)
Q Consensus 206 ~~~~~~ 211 (759)
++...|
T Consensus 93 rla~sg 98 (115)
T TIGR02508 93 RLAASG 98 (115)
T ss_pred HHHhCC
Confidence 555443
No 481
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=35.90 E-value=4.7e+02 Score=26.32 Aligned_cols=169 Identities=12% Similarity=0.114 Sum_probs=0.0
Q ss_pred cCChHHHHHHHHHHHHC-----CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 004362 439 MGCVSDANNLVNDAISK-----GYIPDIFTFNTLIDGYCKQLKMEIAIEILNTMWSHGVTPDVITYNSLLNGLCKAAKSE 513 (759)
Q Consensus 439 ~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 513 (759)
.++.+.|.+-+-...+. ....+..++..++..|...++|+.--+...-+.. +.|+..
T Consensus 25 ~~~~~~~ie~Ll~~EkqtR~~~D~~s~~kv~~~i~~lc~~~~~w~~Lne~i~~Lsk------------------krgqlk 86 (439)
T KOG1498|consen 25 QIDLEAAIEELLNLEKQTRLASDMASNTKVLEEIMKLCFSAKDWDLLNEQIRLLSK------------------KRGQLK 86 (439)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH------------------HhhHHH
Q ss_pred HHHH--HHHHHHHcCCCCChhcHHHHHHH-------------------------HHhcCCHHHHHHHHHHHHHCCCCccH
Q 004362 514 DVME--TFKTMIEKRCVPNIITYSILGES-------------------------LCKAHKITEAFNLLEEMENKGLTLDT 566 (759)
Q Consensus 514 ~a~~--~~~~~~~~~~~~~~~~~~~l~~~-------------------------~~~~~~~~~a~~~~~~~~~~~~~~~~ 566 (759)
.|+. +.+-|.-..-.||..+-..++.. +...|+.++|..++.++ ..
T Consensus 87 ~ai~~Mvq~~~~y~~~~~d~~~k~~li~tLr~VtegkIyvEvERarlTk~L~~ike~~Gdi~~Aa~il~el-------~V 159 (439)
T KOG1498|consen 87 QAIQSMVQQAMTYIDGTPDLETKIKLIETLRTVTEGKIYVEVERARLTKMLAKIKEEQGDIAEAADILCEL-------QV 159 (439)
T ss_pred HHHHHHHHHHHHhccCCCCchhHHHHHHHHHHhhcCceEEeehHHHHHHHHHHHHHHcCCHHHHHHHHHhc-------ch
Q ss_pred HHHHHH------------HHHHHccCChhhHHHHHHHHHHccCCCCc-----hhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004362 567 VAFGTL------------INGFCNSGDLDGAYQLFRRMEDQYKISHT-----TATYNIMINAFSEKLNFYMAEKLFYEMS 629 (759)
Q Consensus 567 ~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 629 (759)
++|.++ ++.|...+|+-.|.-+-+++..++...++ ...|+.++....+.+.+-.+-+.|+...
T Consensus 160 ETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy 239 (439)
T KOG1498|consen 160 ETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIY 239 (439)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHh
Q ss_pred HcC
Q 004362 630 EKG 632 (759)
Q Consensus 630 ~~~ 632 (759)
..|
T Consensus 240 ~t~ 242 (439)
T KOG1498|consen 240 DTG 242 (439)
T ss_pred ccc
No 482
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=35.77 E-value=91 Score=29.65 Aligned_cols=63 Identities=11% Similarity=-0.029 Sum_probs=49.0
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHH
Q 004362 541 LCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYN 606 (759)
Q Consensus 541 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 606 (759)
..+.|+.++|..+|+.+... -+.++..+..+........++-+|-.+|-++... .|.+..+..
T Consensus 126 ~~~~Gk~ekA~~lfeHAlal-aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti--sP~nseALv 188 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALAL-APTNPQILIEMGQFREMHNEIVEADQCYVKALTI--SPGNSEALV 188 (472)
T ss_pred HHhccchHHHHHHHHHHHhc-CCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeee--CCCchHHHh
Confidence 35789999999999999986 3556777777777667778888999999888877 676665543
No 483
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=35.35 E-value=4.4e+02 Score=25.88 Aligned_cols=109 Identities=17% Similarity=0.079 Sum_probs=60.8
Q ss_pred hhHHHHHHHHhhhCCC----CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHH
Q 004362 92 VQEAVDVFERMDFYNC----EPTVLSYNTIMNILVEYGYFSQVHKVYMRMRNKGIVPDVYTFVIRIKSFCRTRRPHVALR 167 (759)
Q Consensus 92 ~~~A~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 167 (759)
...|.+.|+.+...+. ..++..-..++....+.|..+.-..+++.... .++......++.+.+...+++...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhhccCCHHHHHH
Confidence 5666777777765311 23445555566667777775555455444444 2467777888888888888888888
Q ss_pred HHhhchhCC-CCCCHHhHHHHHHHHHhcCCh--hHHHHHHH
Q 004362 168 LLKNMPSQG-FEPNAVAYCTLIAGFYEENHN--VEAYELFD 205 (759)
Q Consensus 168 ~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~ 205 (759)
+++.+...+ +++ ... ..++.++...+.. +.+++.+.
T Consensus 223 ~l~~~l~~~~v~~-~d~-~~~~~~~~~~~~~~~~~~~~~~~ 261 (324)
T PF11838_consen 223 LLDLLLSNDKVRS-QDI-RYVLAGLASSNPVGRDLAWEFFK 261 (324)
T ss_dssp HHHHHHCTSTS-T-TTH-HHHHHHHH-CSTTCHHHHHHHHH
T ss_pred HHHHHcCCccccc-HHH-HHHHHHHhcCChhhHHHHHHHHH
Confidence 888888754 332 233 3333344423332 55555443
No 484
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=35.30 E-value=4.2e+02 Score=26.19 Aligned_cols=64 Identities=16% Similarity=0.207 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHcCCCCCh----hcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHH
Q 004362 512 SEDVMETFKTMIEKRCVPNI----ITYSILGESLCKAHKITEAFNLLEEMENKGLTLDTVAFGTLINGFC 577 (759)
Q Consensus 512 ~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 577 (759)
.++...++..+++. .|+. ..|..++......|.++.++.+|++++..|..|-...-..+++.+.
T Consensus 119 ~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 119 KEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 45666777777665 3444 3566777777788888888888888888888777776666666654
No 485
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=35.11 E-value=5.5e+02 Score=28.60 Aligned_cols=30 Identities=3% Similarity=0.017 Sum_probs=20.2
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHCCCCCc
Q 004362 676 GRVINCLCVDHRVHEAVGFVHLMVQKGIVPE 706 (759)
Q Consensus 676 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 706 (759)
..++..+ ..++...++.+++.+...|+++.
T Consensus 250 f~LldAL-~~~d~~~al~~l~~L~~~G~d~~ 279 (709)
T PRK08691 250 YELLTGI-INQDGAALLAKAQEMAACAVGFD 279 (709)
T ss_pred HHHHHHH-HcCCHHHHHHHHHHHHHhCCCHH
Confidence 3343333 34777888888888888777776
No 486
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=34.15 E-value=78 Score=23.05 Aligned_cols=40 Identities=13% Similarity=0.175 Sum_probs=21.8
Q ss_pred cccccccchHHHHHHHhcCCCchHHHH-HHHhhhhh-hhhhh
Q 004362 715 DKREVASPKIVVEDLLKKSHITYYAYE-LLFDGIRD-KKLLK 754 (759)
Q Consensus 715 ~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~ 754 (759)
-.|+.+.+..+++++++.|+.|.+++. ++...+.+ |++|+
T Consensus 13 ~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG~~w~ 54 (79)
T PF02607_consen 13 LAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIGELWE 54 (79)
T ss_dssp HTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 345556666666666666666665543 34444444 55554
No 487
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=33.91 E-value=2e+02 Score=27.19 Aligned_cols=55 Identities=9% Similarity=-0.052 Sum_probs=32.1
Q ss_pred HHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004362 574 NGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSE 630 (759)
Q Consensus 574 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 630 (759)
..+.+.++++.|....++.... .|.++.-+.--+.+|.+.|.+.-|++-++...+
T Consensus 189 ~~~~~e~~~~~al~~~~r~l~l--~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~ 243 (269)
T COG2912 189 AALLRELQWELALRVAERLLDL--NPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVE 243 (269)
T ss_pred HHHHHhhchHHHHHHHHHHHhh--CCCChhhccCcHHHHHhcCCchhhHHHHHHHHH
Confidence 3455566666666666666655 555555555555566666666666555555443
No 488
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=33.69 E-value=90 Score=22.65 Aligned_cols=16 Identities=38% Similarity=0.194 Sum_probs=8.6
Q ss_pred cCCHHHHHHHHHHHHH
Q 004362 615 KLNFYMAEKLFYEMSE 630 (759)
Q Consensus 615 ~g~~~~A~~~~~~~~~ 630 (759)
.|++++|+.+|...++
T Consensus 19 ~gny~eA~~lY~~ale 34 (75)
T cd02680 19 KGNAEEAIELYTEAVE 34 (75)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 4555555555555443
No 489
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=33.66 E-value=2.1e+02 Score=21.56 Aligned_cols=69 Identities=17% Similarity=0.085 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHhhchhCCCCCCHHhHHHHHHHHHhcCChhHHHHH
Q 004362 129 QVHKVYMRMRNKGIVPDVYTFVIRIKSFCRTRRPHVALRLLKNMPSQGFEPNAVAYCTLIAGFYEENHNVEAYEL 203 (759)
Q Consensus 129 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 203 (759)
.+.++++.+.+.| -.+..-...+-.+--..|+.+.|++++..++ +| +..+...+.++...|.-.-|.++
T Consensus 20 ~~~~v~d~ll~~~-ilT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~LA~el 88 (88)
T cd08819 20 KTRDVCDKCLEQG-LLTEEDRNRIEAATENHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHELAREL 88 (88)
T ss_pred hHHHHHHHHHhcC-CCCHHHHHHHHHhccccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchhhhhcC
No 490
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=33.41 E-value=1.7e+02 Score=28.03 Aligned_cols=62 Identities=15% Similarity=0.032 Sum_probs=33.5
Q ss_pred HHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh
Q 004362 585 AYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCK 649 (759)
Q Consensus 585 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 649 (759)
|.++|..+... .|.+...|+.++-.+...|+.-.|+-.|-+..-.. .|-+.+...|...+.+
T Consensus 1 A~~~Y~~A~~l--~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~-~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRL--LPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVR-IPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH---TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSS-B--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHh--CCCCCCcccchhhhhccccchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHH
Confidence 44556666655 66666666666666666666666666655555332 3445555555555544
No 491
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=33.40 E-value=3e+02 Score=23.27 Aligned_cols=79 Identities=13% Similarity=0.149 Sum_probs=37.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCC-----CCCChhhHHHHHHHHHhcCC-hhHHHHHHHHHhhCCCCCCHHHHHHHH
Q 004362 185 CTLIAGFYEENHNVEAYELFDEMLGMG-----ISPDIATFNKLIHTLCKKGN-VRESEKLFNKVLKRGVSPNLFTFNMFI 258 (759)
Q Consensus 185 ~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~ 258 (759)
|.++.-....+++...+.+++.+.... -..+...|..++.+.++... --.+..+|.-+.+.+..+++.-|..++
T Consensus 43 N~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li 122 (145)
T PF13762_consen 43 NCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLI 122 (145)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 444444444444444444444442110 01233445566655544443 233445555555555555666666666
Q ss_pred HHHHh
Q 004362 259 QGLCR 263 (759)
Q Consensus 259 ~~~~~ 263 (759)
.++.+
T Consensus 123 ~~~l~ 127 (145)
T PF13762_consen 123 KAALR 127 (145)
T ss_pred HHHHc
Confidence 55543
No 492
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=33.26 E-value=1.1e+02 Score=18.62 Aligned_cols=25 Identities=20% Similarity=0.171 Sum_probs=12.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 004362 605 YNIMINAFSEKLNFYMAEKLFYEMS 629 (759)
Q Consensus 605 ~~~l~~~~~~~g~~~~A~~~~~~~~ 629 (759)
|..++..-...+++++|++-|++++
T Consensus 4 ~~~Lgeisle~e~f~qA~~D~~~aL 28 (38)
T PF10516_consen 4 YDLLGEISLENENFEQAIEDYEKAL 28 (38)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4444555555555555555554443
No 493
>PF13934 ELYS: Nuclear pore complex assembly
Probab=33.01 E-value=4e+02 Score=24.66 Aligned_cols=122 Identities=12% Similarity=0.105 Sum_probs=71.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004362 78 VHIGVMRNYGRRGKVQEAVDVFERMDFYNCEPTVLSYNTIMNILVEYGYFSQVHKVYMRMRNKGIVPDVYTFVIRIKSFC 157 (759)
Q Consensus 78 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 157 (759)
.....+..+...++++.|++.+-... ..|+- -..++.++...|+...|..++..+.-.. .+......++.. .
T Consensus 80 ~~~~~g~W~LD~~~~~~A~~~L~~ps---~~~~~--~~~Il~~L~~~~~~~lAL~y~~~~~p~l--~s~~~~~~~~~~-L 151 (226)
T PF13934_consen 80 IKFIQGFWLLDHGDFEEALELLSHPS---LIPWF--PDKILQALLRRGDPKLALRYLRAVGPPL--SSPEALTLYFVA-L 151 (226)
T ss_pred HHHHHHHHHhChHhHHHHHHHhCCCC---CCccc--HHHHHHHHHHCCChhHHHHHHHhcCCCC--CCHHHHHHHHHH-H
Confidence 33344555677888888888883321 11221 2247888888899999988888754321 233333443444 5
Q ss_pred ccCChhhHHHHHhhchhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 004362 158 RTRRPHVALRLLKNMPSQGFEPNAVAYCTLIAGFYEENHNVEAYELFDEMLGMGIS 213 (759)
Q Consensus 158 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 213 (759)
.++...+|..+-+...... ....+..++..+.....- ...++++......
T Consensus 152 a~~~v~EAf~~~R~~~~~~---~~~l~e~l~~~~~~~~~~---~~~~~~Ll~LPl~ 201 (226)
T PF13934_consen 152 ANGLVTEAFSFQRSYPDEL---RRRLFEQLLEHCLEECAR---SGRLDELLSLPLD 201 (226)
T ss_pred HcCCHHHHHHHHHhCchhh---hHHHHHHHHHHHHHHhhh---hhHHHHHHhCCCC
Confidence 6788888988887776632 245666666666543321 2224555555333
No 494
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=32.97 E-value=1.4e+02 Score=19.32 Aligned_cols=32 Identities=16% Similarity=0.158 Sum_probs=16.9
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004362 122 VEYGYFSQVHKVYMRMRNKGIVPDVYTFVIRI 153 (759)
Q Consensus 122 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 153 (759)
.+.|-..++..++++|.+.|+.-+...+..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 34555555555566665555555554444443
No 495
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=32.95 E-value=5.1e+02 Score=25.82 Aligned_cols=251 Identities=11% Similarity=0.065 Sum_probs=0.0
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HhhHH
Q 004362 389 PSIVLYNTLIKGLSQQGLILQALQLMNEMSESGCCPDMWTYNIVINGLCKMGCVSDANNLVNDAISKGYIPD---IFTFN 465 (759)
Q Consensus 389 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~ 465 (759)
|++.+.-.++.-|....+.+.....-..+... .+.+...+.+.+.+.....+..+.+..-.+.+ .....
T Consensus 73 ~~~~~li~~~~~FV~~~n~eqlr~as~~f~~l--------c~~l~~~~~~~~~p~~gi~ii~~av~k~~~~~~qlT~~H~ 144 (422)
T KOG2582|consen 73 PDPETLIELLNDFVDENNGEQLRLASEIFFPL--------CHDLTEAVVKKNKPLRGIRIIMQAVDKMQPSNGQLTSIHA 144 (422)
T ss_pred CCHHHHHHHHHHHHHhcChHHHhhHHHHHHHH--------HHHHHHHHHhcCCccccchHHHHHHHHhccCccchhhhHH
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCChhcHHHH
Q 004362 466 TLIDGYCKQLKMEIAIEILNTMWSHG------VTPDVITYNSLLNGLCKAA--KSEDVMETFKTMIEKRCVPNIITYSIL 537 (759)
Q Consensus 466 ~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l 537 (759)
.++..+.+.+++..+...++.-...- .+|........-.+|.-.| +++.|+.+|...+- .|....-...
T Consensus 145 ~l~~~~L~ak~y~~~~p~ld~divei~~~n~h~~~k~fL~Y~yYgg~iciglk~fe~Al~~~e~~v~---~Pa~~vs~~h 221 (422)
T KOG2582|consen 145 DLLQLCLEAKDYASVLPYLDDDIVEICKANPHLDPKYFLLYLYYGGMICIGLKRFERALYLLEICVT---TPAMAVSHIH 221 (422)
T ss_pred HHHHHHHHhhcccccCCccchhHHHHhccCCCCCHHHHHHHHHhcceeeeccccHHHHHHHHHHHHh---cchhHHHHHH
Q ss_pred HHHHHh--------cCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHccCChhhHHHHHHHHHHccCCCCchhhHHHHH
Q 004362 538 GESLCK--------AHKITEAFNLLEEMENKGLTLDTVAFGTLINGFCNSGDLDGAYQLFRRMEDQYKISHTTATYNIMI 609 (759)
Q Consensus 538 ~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 609 (759)
.++|-+ .|+.-..-+.-......-++|-...|..++++|.+...-+ -+.+.....+.
T Consensus 222 lEaYkkylLvsLI~~GK~~ql~k~ts~~~~r~~K~ms~pY~ef~~~Y~~~~~~e-Lr~lVk~~~~r-------------- 286 (422)
T KOG2582|consen 222 LEAYKKYLLVSLILTGKVFQLPKNTSQNAGRFFKPMSNPYHEFLNVYLKDSSTE-LRTLVKKHSER-------------- 286 (422)
T ss_pred HHHHHHHHHHHhhhcCceeeccccchhhhHHhcccCCchHHHHHHHHhcCCcHH-HHHHHHHHHHH--------------
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc----CChHHHHHHHHHHHhCC
Q 004362 610 NAFSEKLNFYMAEKLFYEMSEKGCPPDNYTYRIMIDSFCKT----GGINSGYCLLLENIDKG 667 (759)
Q Consensus 610 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~g 667 (759)
+.+.++..-|......+..+.+..-..||.+|--.+... +.-+++.++.-.|++.|
T Consensus 287 --F~kDnnt~l~k~av~sl~k~nI~rltktF~sLsL~dIA~~vQLa~~qevek~Ilqmie~~ 346 (422)
T KOG2582|consen 287 --FTKDNNTGLAKQAVSSLYKKNIQRLTKTFLSLSLSDIASRVQLASAQEVEKYILQMIEDG 346 (422)
T ss_pred --HhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHhccC
No 496
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=32.91 E-value=2.8e+02 Score=22.75 Aligned_cols=44 Identities=11% Similarity=0.134 Sum_probs=26.0
Q ss_pred hhHHHHHHHHHHccCCCCchhhHHHHHHHHHhcCCHHHHHHHHH
Q 004362 583 DGAYQLFRRMEDQYKISHTTATYNIMINAFSEKLNFYMAEKLFY 626 (759)
Q Consensus 583 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 626 (759)
+++.++|..+.....-......|...+..+-..|++.+|.++|+
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 33555666666554333445555566666666677777766665
No 497
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=32.80 E-value=2.4e+02 Score=28.87 Aligned_cols=19 Identities=26% Similarity=0.221 Sum_probs=12.8
Q ss_pred HHHHHhCCChHHHHHHHHH
Q 004362 47 IDKLGFHGNFEEMENLLLE 65 (759)
Q Consensus 47 ~~~l~~~~~~~~A~~~~~~ 65 (759)
..-+..+|.|+.|.+++.+
T Consensus 125 aadhvAAGsFetAm~LLnr 143 (422)
T PF06957_consen 125 AADHVAAGSFETAMQLLNR 143 (422)
T ss_dssp HHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHH
Confidence 4455678888888888753
No 498
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=32.39 E-value=6e+02 Score=26.82 Aligned_cols=92 Identities=9% Similarity=-0.006 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHh-cCCChHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCccHHHHH
Q 004362 2 GRSVLPKHVAAVVK-HQKNPLTALEMFNSVKREDGFKHTLLTYKYMIDKLGFHGNFEEMENLLLEMRMDVDDSLLEGVHI 80 (759)
Q Consensus 2 ~~~l~~~~~~~~l~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 80 (759)
|..+++..+..+.. ..|+++.|+.+++.+....+...+......++ +.. ..+.+.
T Consensus 197 gi~~e~eAL~~Ia~~S~Gd~RdAL~lLeq~i~~~~~~it~~~V~~~l----------------------g~~--~~~~~~ 252 (484)
T PRK14956 197 NVQYDQEGLFWIAKKGDGSVRDMLSFMEQAIVFTDSKLTGVKIRKMI----------------------GYH--GIEFLT 252 (484)
T ss_pred CCCCCHHHHHHHHHHcCChHHHHHHHHHHHHHhCCCCcCHHHHHHHh----------------------CCC--CHHHHH
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHH
Q 004362 81 GVMRNYGRRGKVQEAVDVFERMDFYNCEPTVLSYNTI 117 (759)
Q Consensus 81 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 117 (759)
.++......+....|+.+++++...|..|.......+
T Consensus 253 ~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~~~~l~ 289 (484)
T PRK14956 253 SFIKSLIDPDNHSKSLEILESLYQEGQDIYKFLWDSI 289 (484)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHHHHHHH
No 499
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=32.33 E-value=5.5e+02 Score=26.03 Aligned_cols=147 Identities=11% Similarity=0.083 Sum_probs=0.0
Q ss_pred CCCChhcHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCccHHHHHHHHH--------HHHccCChhhHHHHHHHHHHcc
Q 004362 527 CVPNIITYSILGESLCKA--HKITEAFNLLEEMENKGLTLDTVAFGTLIN--------GFCNSGDLDGAYQLFRRMEDQY 596 (759)
Q Consensus 527 ~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--------~~~~~g~~~~A~~~~~~~~~~~ 596 (759)
+.+....|..++-.+.-- .++.+|..+-+.....-...+..++..+.. .|...|+...-..++.......
T Consensus 120 ~~~Ei~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtA 199 (493)
T KOG2581|consen 120 LPAEIEAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTA 199 (493)
T ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHh
Q ss_pred CCCCc----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 004362 597 KISHT----TATYNIMINAFSEKLNFYMAEKLFYEMSEKGCPPD---NYTYRIMIDSFCKTGGINSGYCLLLENIDKGFI 669 (759)
Q Consensus 597 ~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 669 (759)
....+ ....|.+.+.|...+.++.|..+..+..--.-..+ ..-+..++......++|+.|.+++-.++. ..
T Consensus 200 tLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~r--ka 277 (493)
T KOG2581|consen 200 TLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALR--KA 277 (493)
T ss_pred hhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHH--hC
Q ss_pred CCHHHH
Q 004362 670 PSLSTI 675 (759)
Q Consensus 670 p~~~~~ 675 (759)
|.....
T Consensus 278 pq~~al 283 (493)
T KOG2581|consen 278 PQHAAL 283 (493)
T ss_pred cchhhh
No 500
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=32.24 E-value=2.8e+02 Score=23.46 Aligned_cols=60 Identities=15% Similarity=0.177 Sum_probs=33.3
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 004362 205 DEMLGMGISPDIATFNKLIHTLCKKGNVRESEKLFNKVLKRGVSPNLFTFNMFIQGLCRKG 265 (759)
Q Consensus 205 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 265 (759)
..+.+.|.+++.. -..++..+...++...|.++++.+.+.++..+..|....++.+...|
T Consensus 10 ~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 10 ERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3344455543332 23455666666666777777777777665555555444445554444
Done!