Query 004363
Match_columns 759
No_of_seqs 286 out of 2257
Neff 7.5
Searched_HMMs 46136
Date Thu Mar 28 22:09:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004363.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004363hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09525 lacZ beta-D-galactosi 100.0 2E-169 3E-174 1529.5 86.5 705 1-741 298-1025(1027)
2 PRK10340 ebgA cryptic beta-D-g 100.0 2E-169 4E-174 1532.6 87.2 723 1-753 282-1011(1021)
3 COG3250 LacZ Beta-galactosidas 100.0 6.4E-80 1.4E-84 720.0 33.6 555 1-626 249-807 (808)
4 PF02929 Bgal_small_N: Beta ga 100.0 1.6E-77 3.5E-82 633.3 24.6 273 453-741 3-276 (276)
5 PRK10150 beta-D-glucuronidase; 100.0 6.8E-59 1.5E-63 544.4 33.6 301 1-323 241-597 (604)
6 PF02836 Glyco_hydro_2_C: Glyc 100.0 1.1E-52 2.3E-57 451.6 23.8 284 39-322 1-297 (298)
7 KOG2230 Predicted beta-mannosi 99.9 6.5E-20 1.4E-24 198.2 25.1 179 1-195 278-493 (867)
8 PF03198 Glyco_hydro_72: Gluca 99.6 6.1E-15 1.3E-19 154.0 17.4 219 36-265 8-280 (314)
9 PF00150 Cellulase: Cellulase 99.2 6.9E-10 1.5E-14 117.8 16.5 206 48-266 3-279 (281)
10 COG3934 Endo-beta-mannanase [C 98.7 1.9E-08 4.1E-13 109.2 8.0 235 73-321 25-322 (587)
11 PLN03059 beta-galactosidase; P 98.5 2.7E-06 6E-11 100.5 17.7 152 38-195 29-222 (840)
12 PF02449 Glyco_hydro_42: Beta- 98.4 4.9E-07 1.1E-11 100.7 9.3 101 72-172 8-141 (374)
13 COG1874 LacA Beta-galactosidas 98.3 3.6E-06 7.9E-11 98.0 12.5 139 42-186 4-183 (673)
14 PF01301 Glyco_hydro_35: Glyco 98.2 1.3E-05 2.8E-10 87.1 12.5 143 45-193 1-178 (319)
15 PF14488 DUF4434: Domain of un 98.1 5.8E-05 1.2E-09 74.1 12.8 118 69-194 15-160 (166)
16 PF12876 Cellulase-like: Sugar 97.6 9.5E-05 2.1E-09 64.7 5.2 46 150-195 1-64 (88)
17 smart00633 Glyco_10 Glycosyl h 97.5 0.0022 4.7E-08 67.6 14.6 153 137-313 53-253 (254)
18 PF13204 DUF4038: Protein of u 97.4 0.0006 1.3E-08 73.2 9.2 139 48-196 8-187 (289)
19 COG5309 Exo-beta-1,3-glucanase 96.8 0.053 1.2E-06 56.0 16.1 187 64-267 53-284 (305)
20 PF07745 Glyco_hydro_53: Glyco 96.6 0.035 7.6E-07 60.4 13.7 153 78-231 28-234 (332)
21 KOG0496 Beta-galactosidase [Ca 96.1 0.088 1.9E-06 60.9 14.3 141 36-184 17-188 (649)
22 PF00331 Glyco_hydro_10: Glyco 95.6 0.11 2.4E-06 56.7 11.9 231 67-317 12-319 (320)
23 COG2730 BglC Endoglucanase [Ca 94.8 0.11 2.3E-06 58.7 9.0 112 76-191 75-221 (407)
24 TIGR03356 BGL beta-galactosida 94.8 0.11 2.3E-06 59.1 8.9 92 72-170 52-163 (427)
25 PRK15014 6-phospho-beta-glucos 92.9 0.36 7.9E-06 55.5 8.9 92 72-170 67-180 (477)
26 PRK13511 6-phospho-beta-galact 92.7 0.42 9.2E-06 54.9 9.0 91 72-170 52-162 (469)
27 PF06045 Rhamnogal_lyase: Rham 91.9 8.5 0.00019 38.9 15.9 143 437-600 6-153 (203)
28 TIGR01233 lacG 6-phospho-beta- 91.6 0.67 1.4E-05 53.3 9.0 90 72-170 51-161 (467)
29 COG3534 AbfA Alpha-L-arabinofu 91.1 1.9 4.1E-05 48.1 11.2 97 72-189 46-206 (501)
30 COG3867 Arabinogalactan endo-1 90.4 1.8 3.8E-05 45.7 9.7 112 77-192 65-219 (403)
31 PRK09852 cryptic 6-phospho-bet 88.0 1.6 3.5E-05 50.2 8.3 96 72-170 69-182 (474)
32 PLN02814 beta-glucosidase 87.6 2.2 4.7E-05 49.5 9.0 92 72-170 75-187 (504)
33 PLN02849 beta-glucosidase 87.5 2 4.3E-05 49.8 8.7 92 72-170 77-189 (503)
34 PLN02998 beta-glucosidase 87.1 2.1 4.5E-05 49.6 8.5 92 72-170 80-192 (497)
35 COG2723 BglB Beta-glucosidase/ 86.9 2.3 5E-05 48.1 8.4 91 73-170 58-170 (460)
36 PRK09589 celA 6-phospho-beta-g 86.0 3 6.4E-05 48.1 9.0 92 72-170 65-178 (476)
37 PRK09593 arb 6-phospho-beta-gl 85.7 3.2 6.8E-05 47.9 9.0 92 72-170 71-184 (478)
38 KOG2024 Beta-Glucuronidase GUS 84.2 0.32 6.9E-06 50.3 0.1 96 23-118 80-196 (297)
39 PF10633 NPCBM_assoc: NPCBM-as 82.5 5.5 0.00012 33.6 7.0 67 329-401 10-76 (78)
40 PF00232 Glyco_hydro_1: Glycos 82.0 2.1 4.6E-05 49.1 5.6 92 72-170 56-168 (455)
41 PF03659 Glyco_hydro_71: Glyco 76.4 9.3 0.0002 42.8 8.3 77 70-163 13-96 (386)
42 COG1470 Predicted membrane pro 74.1 15 0.00032 41.4 8.9 62 329-402 402-469 (513)
43 COG3693 XynA Beta-1,4-xylanase 73.1 1.5E+02 0.0032 32.4 18.8 200 99-320 84-343 (345)
44 TIGR02635 RhaI_grampos L-rhamn 72.7 59 0.0013 36.4 13.3 106 56-164 22-137 (378)
45 smart00769 WHy Water Stress an 72.1 12 0.00026 33.2 6.5 50 329-379 20-70 (100)
46 PF01120 Alpha_L_fucos: Alpha- 71.3 63 0.0014 35.6 13.3 113 77-194 94-244 (346)
47 PF01229 Glyco_hydro_39: Glyco 71.1 11 0.00024 43.6 7.6 120 73-192 38-200 (486)
48 PF11797 DUF3324: Protein of u 68.0 81 0.0018 29.9 11.5 68 329-402 47-116 (140)
49 PF03168 LEA_2: Late embryogen 66.0 12 0.00027 32.5 5.2 50 329-379 1-51 (101)
50 PF09284 RhgB_N: Rhamnogalactu 65.3 15 0.00032 38.1 6.0 37 443-479 4-40 (249)
51 cd06570 GH20_chitobiase-like_1 54.9 83 0.0018 34.2 10.1 54 70-123 14-94 (311)
52 PF07705 CARDB: CARDB; InterP 50.9 82 0.0018 27.1 7.8 60 329-400 24-83 (101)
53 cd00019 AP2Ec AP endonuclease 49.5 1.3E+02 0.0028 31.7 10.5 88 72-174 83-186 (279)
54 TIGR03234 OH-pyruv-isom hydrox 46.4 1.3E+02 0.0028 31.2 9.8 100 74-193 84-202 (254)
55 PRK13209 L-xylulose 5-phosphat 45.6 1.1E+02 0.0023 32.4 9.1 81 74-173 99-196 (283)
56 PF01263 Aldose_epim: Aldose 1 45.5 1.1E+02 0.0023 32.6 9.2 135 449-599 3-161 (300)
57 PRK09936 hypothetical protein; 45.3 1.5E+02 0.0033 31.8 9.7 123 69-193 33-178 (296)
58 PRK09856 fructoselysine 3-epim 44.1 1.8E+02 0.0039 30.4 10.6 101 73-193 89-206 (275)
59 TIGR00542 hxl6Piso_put hexulos 44.0 1.8E+02 0.0039 30.7 10.6 98 73-193 93-207 (279)
60 PF14871 GHL6: Hypothetical gl 39.8 1.8E+02 0.0039 27.4 8.5 42 78-119 4-66 (132)
61 PLN02361 alpha-amylase 39.5 89 0.0019 35.3 7.6 68 47-119 7-98 (401)
62 PF00703 Glyco_hydro_2: Glycos 38.9 22 0.00048 31.2 2.3 17 21-37 94-110 (110)
63 cd09024 Aldose_epim_lacX Aldos 35.7 3.4E+02 0.0074 28.8 11.2 27 455-481 6-34 (288)
64 PRK13397 3-deoxy-7-phosphohept 35.7 83 0.0018 33.1 6.1 48 71-118 26-87 (250)
65 COG2876 AroA 3-deoxy-D-arabino 35.5 1.2E+02 0.0026 32.1 7.0 61 49-118 43-117 (286)
66 COG5608 LEA14-like dessication 35.3 65 0.0014 31.0 4.7 71 307-379 31-105 (161)
67 smart00812 Alpha_L_fucos Alpha 34.7 5.4E+02 0.012 28.9 12.8 111 77-189 84-226 (384)
68 cd09019 galactose_mutarotase_l 34.7 3.4E+02 0.0075 29.4 11.2 29 558-587 125-153 (326)
69 PRK12331 oxaloacetate decarbox 33.6 1.6E+02 0.0035 33.8 8.5 80 32-116 36-142 (448)
70 PF00128 Alpha-amylase: Alpha 32.6 49 0.0011 34.8 4.1 46 74-119 4-74 (316)
71 PRK13398 3-deoxy-7-phosphohept 32.0 2.3E+02 0.0051 30.0 8.9 60 50-118 26-99 (266)
72 smart00642 Aamy Alpha-amylase 31.9 1.1E+02 0.0023 30.0 6.0 48 72-119 17-92 (166)
73 PRK13210 putative L-xylulose 5 31.9 3.5E+02 0.0077 28.3 10.5 98 73-193 93-207 (284)
74 cd06568 GH20_SpHex_like A subg 31.8 2.6E+02 0.0056 30.6 9.5 54 70-123 14-101 (329)
75 COG5014 Predicted Fe-S oxidore 31.1 1.4E+02 0.0031 29.4 6.3 67 72-162 76-148 (228)
76 cd02742 GH20_hexosaminidase Be 30.8 84 0.0018 33.9 5.5 55 69-123 11-98 (303)
77 PLN02784 alpha-amylase 30.7 1.8E+02 0.0038 36.1 8.5 69 47-119 498-590 (894)
78 cd06565 GH20_GcnA-like Glycosy 30.2 1.2E+02 0.0025 32.9 6.4 55 68-122 11-85 (301)
79 TIGR02588 conserved hypothetic 29.8 2.2E+02 0.0047 26.5 7.0 64 329-399 54-117 (122)
80 cd06564 GH20_DspB_LnbB-like Gl 29.2 3E+02 0.0064 30.0 9.5 54 70-123 13-108 (326)
81 PF02449 Glyco_hydro_42: Beta- 29.2 97 0.0021 34.4 5.8 121 176-320 216-370 (374)
82 PF11211 DUF2997: Protein of u 29.0 51 0.0011 25.3 2.4 19 563-581 1-19 (48)
83 COG0296 GlgB 1,4-alpha-glucan 28.4 92 0.002 37.1 5.5 46 72-117 163-234 (628)
84 PRK12595 bifunctional 3-deoxy- 28.3 2.4E+02 0.0053 31.3 8.6 60 49-117 116-189 (360)
85 PRK14042 pyruvate carboxylase 28.1 2.8E+02 0.006 33.1 9.4 60 53-117 80-143 (596)
86 smart00481 POLIIIAc DNA polyme 27.8 1.5E+02 0.0034 23.7 5.3 41 76-116 17-60 (67)
87 TIGR02631 xylA_Arthro xylose i 26.3 9.5E+02 0.021 26.9 14.8 104 59-165 17-137 (382)
88 PF05913 DUF871: Bacterial pro 26.1 1.2E+02 0.0026 33.7 5.6 47 72-118 12-68 (357)
89 KOG0098 GTPase Rab2, small G p 25.6 2.7E+02 0.0059 28.1 7.3 111 29-155 38-172 (216)
90 PF01261 AP_endonuc_2: Xylose 24.9 2.8E+02 0.0061 27.1 7.8 94 73-182 70-182 (213)
91 PF12891 Glyco_hydro_44: Glyco 24.8 87 0.0019 32.6 4.0 55 135-192 101-176 (239)
92 PF11589 DUF3244: Domain of un 24.7 5E+02 0.011 23.1 10.8 66 318-400 27-93 (106)
93 PF07233 DUF1425: Protein of u 24.4 2.6E+02 0.0056 24.5 6.4 48 329-379 29-80 (94)
94 KOG1552 Predicted alpha/beta h 24.0 2.2E+02 0.0048 30.0 6.8 78 159-240 61-143 (258)
95 PF03162 Y_phosphatase2: Tyros 23.7 3.3E+02 0.0072 26.6 7.7 75 77-162 22-97 (164)
96 KOG0626 Beta-glucosidase, lact 23.4 55 0.0012 37.8 2.5 91 73-170 90-203 (524)
97 PRK14327 (dimethylallyl)adenos 23.0 8.3E+02 0.018 28.6 12.0 129 51-193 259-399 (509)
98 TIGR00222 panB 3-methyl-2-oxob 22.2 4.9E+02 0.011 27.6 9.0 54 64-117 83-136 (263)
99 PLN00196 alpha-amylase; Provis 21.2 3.3E+02 0.0071 31.1 8.1 65 52-119 25-114 (428)
100 KOG1577 Aldo/keto reductase fa 21.1 2.3E+02 0.0049 30.7 6.4 53 72-124 136-215 (300)
101 PF00332 Glyco_hydro_17: Glyco 21.0 5.5E+02 0.012 27.9 9.5 97 57-173 2-99 (310)
102 PF11906 DUF3426: Protein of u 20.7 4.8E+02 0.01 24.6 8.1 51 329-380 73-135 (149)
103 PF02548 Pantoate_transf: Keto 20.5 3.7E+02 0.0079 28.5 7.6 88 65-152 85-173 (261)
104 PF13663 DUF4148: Domain of un 20.5 1.1E+02 0.0024 24.5 2.9 30 70-99 18-48 (58)
No 1
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=100.00 E-value=1.6e-169 Score=1529.50 Aligned_cols=705 Identities=43% Similarity=0.730 Sum_probs=635.0
Q ss_pred CCCCCCCCCCCeEEEEEEEEeCCCCeEEEEEEEEeeEEEEEeCCEEEECCEEEEEEeeecCCCCCCCCCCCCHHHHHHHH
Q 004363 1 MPRLWSAEQPNLYTLVVILKHASGPVVDCESCLVGIRQVSKAPKQLLVNGNPVVIRGVNRHEHHPRVGKTNIESCMVKDL 80 (759)
Q Consensus 1 ~p~lWs~e~P~LY~l~~~l~~~~g~~~d~~~~~~GfR~ie~~~~~~~lNGk~i~lrGvn~h~~~p~~g~~~~~e~~~~dl 80 (759)
+|+|||+|+|+||+|+++|.+.+|+++|+.+++||||+|+++++.|+|||+||+|||+|+|+++|..|++++++.|++||
T Consensus 298 ~p~lWs~e~P~LY~l~v~l~~~~g~v~d~~~~~~GfR~iei~~~~f~LNGkpi~lrGvn~h~~~p~~G~a~t~e~~~~di 377 (1027)
T PRK09525 298 NPKLWSAETPNLYRAVVSLLDADGTLIEAEAYDVGFRKVEIENGLLKLNGKPLLIRGVNRHEHHPEHGQVMDEETMVQDI 377 (1027)
T ss_pred CCCcCCCCCCeeEEEEEEEEeCCCcEEEEEEeeEEEEEEEEECCEEEECCEEEEEEEeEccccCcccCccCCHHHHHHHH
Confidence 69999999999999999998778999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCEEEcCCCCChhHHHHHHHhcCCEEEeeccccccCcccccCCCCCCCCHHHHHHHHHHHHHHHHhcCCCceE
Q 004363 81 VLMKQNNINAVRNSHYPQHPRWYELCDLFGLYMIDEANIETHGFYFSEHLKHPTMEPSWAAAMMDRVIGMVERDKNHASI 160 (759)
Q Consensus 81 ~~mK~~g~N~vR~~h~p~~~~~~dlcDe~Gi~V~~E~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~mV~r~rNHPSI 160 (759)
++||++|+|+||+||||++|+||++|||+|||||+|+++++||+... ..+.++|.|.+++++++++||+|+||||||
T Consensus 378 ~lmK~~g~NaVR~sHyP~~p~fydlcDe~GilV~dE~~~e~hg~~~~---~~~~~dp~~~~~~~~~~~~mV~RdrNHPSI 454 (1027)
T PRK09525 378 LLMKQHNFNAVRCSHYPNHPLWYELCDRYGLYVVDEANIETHGMVPM---NRLSDDPRWLPAMSERVTRMVQRDRNHPSI 454 (1027)
T ss_pred HHHHHCCCCEEEecCCCCCHHHHHHHHHcCCEEEEecCccccCCccc---cCCCCCHHHHHHHHHHHHHHHHhCCCCCEE
Confidence 99999999999999999999999999999999999999999996421 234578999999999999999999999999
Q ss_pred EEEecCCCCCCCccHHHHHHHHHhcCCCCeEEecCCCCCCCCcceeCCCCCChH-----------HHHHHHcCCCCCCcE
Q 004363 161 ICWSLGNEAGHGPNHSAAAGWIRGKDPSRLLHYEGGGSRTPSTDIVCPMYMRVW-----------DIVMIAKDPTETRPL 229 (759)
Q Consensus 161 i~WslgNE~~~g~~~~~~~~~ik~~DptR~v~~~~~~~~~~~~Di~~~~Y~~~~-----------~~~~~~~~~~~~kP~ 229 (759)
+|||+|||++.|.++.+|++++|++||||||+|++++.....+|++++||..++ .++.+.......||+
T Consensus 455 i~WSlgNE~~~g~~~~~l~~~~k~~DptRpV~y~~~~~~~~~~Dv~~~my~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~ 534 (1027)
T PRK09525 455 IIWSLGNESGHGANHDALYRWIKSNDPSRPVQYEGGGADTAATDIICPMYARVDEDQPFPAVPKWSIKKWISLPGETRPL 534 (1027)
T ss_pred EEEeCccCCCcChhHHHHHHHHHhhCCCCcEEECCCCCCCCccccccCCCCCccccccccccchHHHHHHHhcCCCCCCE
Confidence 999999999999999999999999999999999986444567999999998764 577777664447999
Q ss_pred EE--EeccCCCCCcCHHHHHHHHHcccCceeeeEeecCCCceeeecCCCceEEEecCCCCCCCCCcccccCCCCCCCCCC
Q 004363 230 IL--YSHAMGNSNGNIHEYWEAIDSTFGLQGGFIWDWVDQGLLRELADGTKHWAYGGDFGDTPNDLNFCLNGLLWPDRTP 307 (759)
Q Consensus 230 i~--y~h~~gn~~g~~~~~w~~~~~~p~~~GgfiW~~~D~~~~~~~~~g~~~~~ygg~f~~~~~d~~f~~~Glv~~dr~p 307 (759)
|+ |+|+|||++|++++||++|+++|.++|||||+|+|||+.+++++|+.+|+||||||+.|||+|||+||||++||+|
T Consensus 535 i~cEY~Hamgn~~g~l~~yw~~~~~~~~~~GgfIW~w~Dqg~~~~~~~G~~~~~YGGDfgd~p~d~nFc~dGlv~~dR~p 614 (1027)
T PRK09525 535 ILCEYAHAMGNSLGGFAKYWQAFRQYPRLQGGFIWDWVDQGLTKYDENGNPWWAYGGDFGDTPNDRQFCMNGLVFPDRTP 614 (1027)
T ss_pred EEEechhcccCcCccHHHHHHHHhcCCCeeEEeeEeccCcceeeECCCCCEEEEECCcCCCCCCCCCceeceeECCCCCC
Confidence 99 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHhhcceEEeee---ccEEEEEeccCCCCCCCeEEEEEEEeCCeEEEEEEeeCCcCCCCCEEEEEec-CCCCc
Q 004363 308 HPALHEVKYVYQAIKVSLK---KGTLKISNTNFFETTQGLEFSWVAHGDGYKLGFGILSLPLIKPHSNYEIELK-SSPWY 383 (759)
Q Consensus 308 kp~~~~~k~~~qpi~~~~~---~~~i~v~N~~~f~~l~~~~~~w~l~~dg~~v~~g~~~~~~v~p~~~~~i~lp-~~~~~ 383 (759)
+|+++|+|++||||+++.. +++|+|+|+|+|++|+++.+.|+|..||+++++|.+.+ +|+||++++|+|| .+.
T Consensus 615 ~p~~~E~K~v~qpv~~~~~~~~~~~~~i~N~~~F~~l~~~~~~w~~~~~G~~~~~g~~~~-~~~p~~~~~i~l~~~~~-- 691 (1027)
T PRK09525 615 HPALYEAKHAQQFFQFSLLSTTPLTIEVTSEYLFRHSDNELLHWSVALDGKPLASGEVPL-DLAPQGSQRITLPELPQ-- 691 (1027)
T ss_pred CccHHHHHhhcCcEEEEEccCCCcEEEEEEcccCCcccccEEEEEEEECCEEEEeeeEcc-ccCCCCceEEecCCCCC--
Confidence 9999999999999999763 35899999999999999999999999999999999975 8999999999999 441
Q ss_pred ccCCCCCCceEEEEEEEEeccccccccCCcEEEEEeeeeCCCCccCccccccCCCceEEEeeCCeEEEEccCcEEEEEEc
Q 004363 384 SQWNSCSAEEIFLTVTAKLMNSTRWAEAGHVISTAQVQLPSKRERLPHVIRTGDAIILQENLGNTIQLSHQNSWEIKFDI 463 (759)
Q Consensus 384 ~~~~~~~~~e~~l~i~~~lk~~t~wa~~G~~va~~Q~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~Fdk 463 (759)
..+++||+|+|+++||++++||++||+||++||.|+.... .+.. .....++.++++++.+.|. +++|+++|||
T Consensus 692 ----~~~~~e~~l~~~~~~~~~~~~a~~g~~va~~Q~~l~~~~~-~~~~-~~~~~~~~~~~~~~~~~i~-~~~~~~~f~~ 764 (1027)
T PRK09525 692 ----PESAGQLWLNVEVVQPNATAWSEAGHRSAWQQWRLPEPLS-LPLP-TASHAAPQLTQDEQDFCIE-LGNQRWQFNR 764 (1027)
T ss_pred ----CCCCceEEEEEEEEECCCCcccCCCCEEEEEEEEeccCcc-cccc-cccCCCceEEEcCCeEEEE-ECCEEEEEEC
Confidence 2356799999999999999999999999999999963221 1100 1112334567777787775 5789999999
Q ss_pred CcccEEEEEECCEeeeccCcccceeecCCCCCCCCCCChh------hHHHHHcCccceeeEEEEEEEEEeCCceEEEEEE
Q 004363 464 QTGAVESWKVEGVSVMKRGIFPCFWRAPTDNDKGGGESSY------YSRWRAAGIDSLVFLTKSCSIQNVTDYFVKIRVV 537 (759)
Q Consensus 464 ~tG~l~s~~~~g~~ll~~~~~~nfwRaptDND~g~~~~~~------~~~W~~~g~~~~~~~~~~~~~~~~~~~~v~v~~~ 537 (759)
++|.|+||+++|++||.+||+|||||||||||+|.+.... ...|+++|+++++.++.+++++..++ .++|++.
T Consensus 765 ~~G~l~s~~~~g~~~l~~~~~~~~wRaptdND~g~~~~~~~~~~~~~~~w~~ag~~~~~~~~~~~~~~~~~~-~v~v~~~ 843 (1027)
T PRK09525 765 QSGLLSQWWVGGKEQLLTPLRDQFTRAPLDNDIGVSEATRIDPNAWVERWKAAGLYQLEARLLQCDADTLAD-AVLITTE 843 (1027)
T ss_pred CCceEEEEEECCEEeeccCCcCceECCCcccCcCccccccccccchHHHHHHcCCccceeEEEEEEEEecCC-eEEEEEE
Confidence 9999999999999999999999999999999998754322 46899999999988988888766444 4556555
Q ss_pred EecCCccccchhhhhhhccceEEEEEEEEEecCCeEEEEEEEeeCCCCCCCcceeEEEEEecCCCCceEEEcCCCCCCch
Q 004363 538 YDGTPRVDMSSLTKLEKAKALFEIVIDYTIYGSGNVIVECNFKPNTSDLPPLPRVGVEFHLEQSMDKIKFYGRGPFECYP 617 (759)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~i~~~G~i~v~~~~~~~~~~~p~lpRiG~~~~lp~~~~~v~wyGrGP~EnY~ 617 (759)
+..... ....++++++|+|+++|.|.|++++.+. ..+|.||||||+|.||++|++|+||||||+|||+
T Consensus 844 ~~~~~~-----------~~~~~~~~~~y~i~~~G~i~v~~~~~~~-~~~p~lPRiG~~~~lp~~~~~v~wyGrGP~EnY~ 911 (1027)
T PRK09525 844 HAYQHQ-----------GKTLFISRKTYRIDGQGEMTIDVDVEVA-SDLPPPARIGLTCQLAQVAERVSWLGLGPHENYP 911 (1027)
T ss_pred EEeecC-----------CCccEEEEEEEEEeCCCEEEEEEEEEeC-CCCCCCceEEEEEECCccccccEEECCCCCCChh
Confidence 322111 0123688999999999999999999998 7889999999999999999999999999999999
Q ss_pred hhhcCcceeeeccccccccccccCccCCCCccceEEEEEeeCCcceEEEEeccCCCCeEEEecCCCHHHHhccCCCCCCc
Q 004363 618 DRKAAAHVDVYEQIVGDMHVPYIVPGECAARADVRWVTFQNKEGIGIYASMYSSSPPMQLNASYYTTTELDRATHNEQLV 697 (759)
Q Consensus 618 DR~~aa~~G~y~~tv~e~~~pYv~PQEnGnr~dvrw~~l~~~~g~gl~~~~~~~~~~f~fsa~~Yt~~~L~~a~H~~eL~ 697 (759)
|||+|+++|+|+++|++||+|||+|||||||+||||++|+ ||.+ .+ .|+|||+|||+++|++|+|++||+
T Consensus 912 Drk~~a~~G~y~~~V~~~~~pYv~PQEnGnr~dvrw~~l~-----~l~v---~~--~~~fsa~~yt~~~L~~a~H~~eL~ 981 (1027)
T PRK09525 912 DRLLAACFGRWDLPLSDMHTPYIFPSENGLRCGTRELNYG-----RHQI---RG--DFHFNISRYSQQQLMETSHRHLLQ 981 (1027)
T ss_pred hhhhcCcEeEECCcHHHhCCCCCCccCCCCccceEEEEEc-----CeEE---Ee--eeeEEecCCCHHHHHhCcCHhhCC
Confidence 9999999999999999999999999999999999999994 4633 23 399999999999999999999999
Q ss_pred CCCeEEEEEccccccccCCCCCCCCCCCCccccCCcEEEEEEEE
Q 004363 698 KEDKIEVHLDHKHMGLGGDDSWTPCVHDKYLVPAVAYSFSIRLS 741 (759)
Q Consensus 698 ~~~~~~l~iD~~q~GvGg~~ScGp~~~~~Y~l~~~~y~~~f~i~ 741 (759)
+++.|+||||++||||||++||||.|||+|+|+.++|+|+|+|+
T Consensus 982 ~~~~~~l~iD~~q~GvGg~~S~g~~~~~~y~~~~~~~~~~f~~~ 1025 (1027)
T PRK09525 982 AEEGTWLNIDGFHMGVGGDDSWSPSVHPEFLLSAGRYHYQLTWC 1025 (1027)
T ss_pred CCCCEEEEECcccCCCCCCCCCCCCCCHHHCCCCCcEEEEEEEE
Confidence 99999999999999999999999999999999999999999986
No 2
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=100.00 E-value=2e-169 Score=1532.59 Aligned_cols=723 Identities=32% Similarity=0.579 Sum_probs=650.7
Q ss_pred CCCCCCCCCCCeEEEEEEEEeCCCCeEEEEEEEEeeEEEEEeCCEEEECCEEEEEEeeecCCCCCCCCCCCCHHHHHHHH
Q 004363 1 MPRLWSAEQPNLYTLVVILKHASGPVVDCESCLVGIRQVSKAPKQLLVNGNPVVIRGVNRHEHHPRVGKTNIESCMVKDL 80 (759)
Q Consensus 1 ~p~lWs~e~P~LY~l~~~l~~~~g~~~d~~~~~~GfR~ie~~~~~~~lNGk~i~lrGvn~h~~~p~~g~~~~~e~~~~dl 80 (759)
+|+|||+|+|+||+|+++|.+.+|+++|+.+++||||+|+++++.|+|||+||+|||+|+|+++|..|++++++.|++||
T Consensus 282 ~p~lWs~e~P~LY~l~v~l~~~~g~~~d~~~~~~GfR~iei~~~~f~lNGkpi~lrGvnrh~~~p~~G~a~~~e~~~~dl 361 (1021)
T PRK10340 282 QPQQWSAESPYLYHLVMTLKDANGNVLEVVPQRVGFRDIKVRDGLFWINNRYVKLHGVNRHDNDHRKGRAVGMDRVEKDI 361 (1021)
T ss_pred CCCcCCCCCCeeEEEEEEEEcCCCCEEEEEEeeeEEEEEEEECCEEEECCEEEEEEEeecCCCCcccCccCCHHHHHHHH
Confidence 69999999999999999998778999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCEEEcCCCCChhHHHHHHHhcCCEEEeeccccccCcccccCCCCCCCCHHHHHHHHHHHHHHHHhcCCCceE
Q 004363 81 VLMKQNNINAVRNSHYPQHPRWYELCDLFGLYMIDEANIETHGFYFSEHLKHPTMEPSWAAAMMDRVIGMVERDKNHASI 160 (759)
Q Consensus 81 ~~mK~~g~N~vR~~h~p~~~~~~dlcDe~Gi~V~~E~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~mV~r~rNHPSI 160 (759)
++||++|+|+||+||||++++|||+|||+|||||+|+++++||+........+.++|.|.+++++++++||+|+||||||
T Consensus 362 ~lmK~~g~NavR~sHyP~~~~fydlcDe~GllV~dE~~~e~~g~~~~~~~~~~~~~p~~~~~~~~~~~~mV~RdrNHPSI 441 (1021)
T PRK10340 362 QLMKQHNINSVRTAHYPNDPRFYELCDIYGLFVMAETDVESHGFANVGDISRITDDPQWEKVYVDRIVRHIHAQKNHPSI 441 (1021)
T ss_pred HHHHHCCCCEEEecCCCCCHHHHHHHHHCCCEEEECCcccccCcccccccccccCCHHHHHHHHHHHHHHHHhCCCCCEE
Confidence 99999999999999999999999999999999999999999997532222345678999999999999999999999999
Q ss_pred EEEecCCCCCCCccHHHHHHHHHhcCCCCeEEecCCCCCCCCcceeCCCCCChHHHHHHHcCCCCCCcEEE--EeccCCC
Q 004363 161 ICWSLGNEAGHGPNHSAAAGWIRGKDPSRLLHYEGGGSRTPSTDIVCPMYMRVWDIVMIAKDPTETRPLIL--YSHAMGN 238 (759)
Q Consensus 161 i~WslgNE~~~g~~~~~~~~~ik~~DptR~v~~~~~~~~~~~~Di~~~~Y~~~~~~~~~~~~~~~~kP~i~--y~h~~gn 238 (759)
+|||+|||+++|.++.+|++++|++||||||||+++. ....+||+|.||+.++.+..+.+.. .+||+|+ |+|+|||
T Consensus 442 i~WslGNE~~~g~~~~~~~~~~k~~DptR~v~~~~~~-~~~~~Dv~~~~Y~~~~~~~~~~~~~-~~kP~i~~Ey~hamgn 519 (1021)
T PRK10340 442 IIWSLGNESGYGCNIRAMYHAAKALDDTRLVHYEEDR-DAEVVDVISTMYTRVELMNEFGEYP-HPKPRILCEYAHAMGN 519 (1021)
T ss_pred EEEECccCccccHHHHHHHHHHHHhCCCceEEeCCCc-CccccceeccccCCHHHHHHHHhCC-CCCcEEEEchHhccCC
Confidence 9999999999999999999999999999999999864 3567999999999998888776654 3799999 9999999
Q ss_pred CCcCHHHHHHHHHcccCceeeeEeecCCCceeeecCCCceEEEecCCCCCCCCCcccccCCCCCCCCCCCCcHHHHHHhh
Q 004363 239 SNGNIHEYWEAIDSTFGLQGGFIWDWVDQGLLRELADGTKHWAYGGDFGDTPNDLNFCLNGLLWPDRTPHPALHEVKYVY 318 (759)
Q Consensus 239 ~~g~~~~~w~~~~~~p~~~GgfiW~~~D~~~~~~~~~g~~~~~ygg~f~~~~~d~~f~~~Glv~~dr~pkp~~~~~k~~~ 318 (759)
++|++++||++++++|.++|||||+|+|||+..++++|..+|+||||||+.|+|++||+||||++||+|||+++++|++|
T Consensus 520 ~~g~~~~yw~~~~~~p~l~GgfiW~~~D~~~~~~~~~G~~~~~ygGd~g~~p~~~~f~~~Glv~~dr~p~p~~~e~k~~~ 599 (1021)
T PRK10340 520 GPGGLTEYQNVFYKHDCIQGHYVWEWCDHGIQAQDDNGNVWYKYGGDYGDYPNNYNFCIDGLIYPDQTPGPGLKEYKQVI 599 (1021)
T ss_pred CCCCHHHHHHHHHhCCceeEEeeeecCcccccccCCCCCEEEEECCCCCCCCCCcCcccceeECCCCCCChhHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEee-e--ccEEEEEeccCCCCCCCeEEEEEEEeCCeEEEEEEeeCCcCCCCCEEEEEecCCCCcccCCCCCCceEE
Q 004363 319 QAIKVSL-K--KGTLKISNTNFFETTQGLEFSWVAHGDGYKLGFGILSLPLIKPHSNYEIELKSSPWYSQWNSCSAEEIF 395 (759)
Q Consensus 319 qpi~~~~-~--~~~i~v~N~~~f~~l~~~~~~w~l~~dg~~v~~g~~~~~~v~p~~~~~i~lp~~~~~~~~~~~~~~e~~ 395 (759)
|||+++. . .++|+|+|+|+|++|+++.+.|+|.+||+++++|++++|+|+||++++|+||.+ ...++||+
T Consensus 600 ~pv~~~~~~~~~~~~~i~N~~~F~~l~~~~~~w~l~~dG~~~~~g~~~~~~i~p~~~~~v~l~~~-------~~~~~e~~ 672 (1021)
T PRK10340 600 APVKIHALDLTRGELKVENKLWFTNLDDYTLHAEVRAEGETLASGQIKLRDVAPNSEAPLQITLP-------QLDAREAF 672 (1021)
T ss_pred ceEEEEEecCCCCEEEEEECccCCCccccEEEEEEEECCEEEEEeeeccCccCCCCceEEEecCC-------CCCCceEE
Confidence 9999975 3 579999999999999999999999999999999999888999999999999854 23467999
Q ss_pred EEEEEEeccccccccCCcEEEEEeeeeCCCCccCccccccCCCceEEEeeCCeEEEEccCcEEEEEEcCcccEEEEEECC
Q 004363 396 LTVTAKLMNSTRWAEAGHVISTAQVQLPSKRERLPHVIRTGDAIILQENLGNTIQLSHQNSWEIKFDIQTGAVESWKVEG 475 (759)
Q Consensus 396 l~i~~~lk~~t~wa~~G~~va~~Q~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~Fdk~tG~l~s~~~~g 475 (759)
|+|+++||++|+||++||+||++||.|+......+........++.++++++.+.|. +++|+++|||++|.|+||+++|
T Consensus 673 l~~~~~~~~~~~wa~~g~~va~~Q~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~fdk~tG~l~s~~~~g 751 (1021)
T PRK10340 673 LNITVTKDSRTRYSEAGHSIATYQFPLKENTAQPVPFAPNNARPLTLEEDRLSCTVR-GYNFAITFSKVSGKLTSWQVNG 751 (1021)
T ss_pred EEEEEEECCCccccCCCcEEEEEEEEecccccccccccccCCCCeeEEecCCEEEEE-eCCEEEEEECCcceEEEEEeCC
Confidence 999999999999999999999999999633211001111223456777778887775 5789999999999999999999
Q ss_pred EeeeccCcccceeecCCCCCCCCCCChhhHHHHHcCccceeeEEEEEEEEEeCCceEEEEEEEecCCccccchhhhhhhc
Q 004363 476 VSVMKRGIFPCFWRAPTDNDKGGGESSYYSRWRAAGIDSLVFLTKSCSIQNVTDYFVKIRVVYDGTPRVDMSSLTKLEKA 555 (759)
Q Consensus 476 ~~ll~~~~~~nfwRaptDND~g~~~~~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~ 555 (759)
++||.+||++||||||||||++. ....|+++|+++++.++.+++++..++ .++|.+.+...+.. .
T Consensus 752 ~~ll~~~~~~nfwRAptDND~~~----~~~~W~~ag~~~l~~~~~~~~~~~~~~-~v~v~~~~~~~~~~----------~ 816 (1021)
T PRK10340 752 ESLLTREPKINFFKPMIDNHKQE----YEGLWQPNHLQIMQEHLRDFAVEQSDG-EVLIISRTVIAPPV----------F 816 (1021)
T ss_pred eeeecCCCccceEeCCccCCcch----hhHHHHHcCCccceeEEEEEEEEeCCC-eEEEEEEEEecCCc----------c
Confidence 99999999999999999999542 346799999999988998888776544 55565555433221 1
Q ss_pred cceEEEEEEEEEecCCeEEEEEEEeeCCCCCCC-cceeEEEEEecCCCCceEEEcCCCCCCchhhhcCcceeeecccccc
Q 004363 556 KALFEIVIDYTIYGSGNVIVECNFKPNTSDLPP-LPRVGVEFHLEQSMDKIKFYGRGPFECYPDRKAAAHVDVYEQIVGD 634 (759)
Q Consensus 556 ~~~~~~~~~Y~i~~~G~i~v~~~~~~~~~~~p~-lpRiG~~~~lp~~~~~v~wyGrGP~EnY~DR~~aa~~G~y~~tv~e 634 (759)
...+.++++|+|+++|.|.|++++.+. ..+|. ||||||+|.||++|++|+||||||+|||+|||+|+++|+|+++|++
T Consensus 817 ~~~~~~~~~y~i~~~G~i~v~~~~~~~-~~~p~~lPRiG~~~~lp~~~~~v~wyGrGP~EnY~DRk~sa~~G~y~~~V~~ 895 (1021)
T PRK10340 817 DFGMRCTYIYRIAADGQVNVALSGERY-GDYPHMIPCIGFTMGINGEYDQVAYYGRGPGENYADSQQANLIDIYRSTVDA 895 (1021)
T ss_pred cceeEEEEEEEEcCCCEEEEEEEEEEC-CCCCccccceEEEEEcCccccccEEECCCCCCCchhhhhhcceeeecCcHHH
Confidence 124678999999999999999999998 77898 7999999999999999999999999999999999999999999999
Q ss_pred ccccccCccCCCCccceEEEEEeeCCcceEEEEeccCCCCeEEEecCCCHHHHhccCCCCCCcCCCeEEEEEcccccccc
Q 004363 635 MHVPYIVPGECAARADVRWVTFQNKEGIGIYASMYSSSPPMQLNASYYTTTELDRATHNEQLVKEDKIEVHLDHKHMGLG 714 (759)
Q Consensus 635 ~~~pYv~PQEnGnr~dvrw~~l~~~~g~gl~~~~~~~~~~f~fsa~~Yt~~~L~~a~H~~eL~~~~~~~l~iD~~q~GvG 714 (759)
||+|||+|||||||+||||++|+|..|.||++ .+.++|+|||+|||+++|++|+|++||++++.|+||||++|||||
T Consensus 896 ~~~pYi~PQEnGnr~dvrw~~l~~~~g~gl~v---~~~~~~~fsa~~ys~~~L~~a~H~~eL~~~~~~~l~iD~~q~GvG 972 (1021)
T PRK10340 896 MFENYPFPQNNGNRQHVRWTALTNRHGNGLLV---VPQRPINFSAWHYTQENIHAAQHTNELQKSDYITLNLDHQLLGLG 972 (1021)
T ss_pred hcCCCCCccCCCCccceEEEEEECCCCCEEEE---EeCCCcEEEccCCCHHHHHhCcCHhhCCCCCCEEEEEcccccCCc
Confidence 99999999999999999999999999999954 345689999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCccccCCcEEEEEEEEEec-CCCCchhhh
Q 004363 715 GDDSWTPCVHDKYLVPAVAYSFSIRLSPLT-AATSGYGIY 753 (759)
Q Consensus 715 g~~ScGp~~~~~Y~l~~~~y~~~f~i~p~~-~~~~~~~~~ 753 (759)
++||||.||++|+|+.++|+|+|+|+|+. .+....+++
T Consensus 973 -~~SwGp~~~~~y~~~~~~~~~~f~l~p~~~~~~~~~~~~ 1011 (1021)
T PRK10340 973 -SNSWGSEVLDSYRVWFRDFSYGFTLLPVSGGEATAQSLA 1011 (1021)
T ss_pred -ccccCCCCCHHHCCCCCcEEEEEEEEEcCCCccchHHHh
Confidence 77999999999999999999999999994 333333333
No 3
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.4e-80 Score=720.04 Aligned_cols=555 Identities=39% Similarity=0.650 Sum_probs=466.0
Q ss_pred CCCCCCCCCCCeEEEEEEEEeCCCCeEEEEEEEEeeEEEEEeCCEEEECCEEEEEEeeecCCCCCCCCCCCCHHHHHHHH
Q 004363 1 MPRLWSAEQPNLYTLVVILKHASGPVVDCESCLVGIRQVSKAPKQLLVNGNPVVIRGVNRHEHHPRVGKTNIESCMVKDL 80 (759)
Q Consensus 1 ~p~lWs~e~P~LY~l~~~l~~~~g~~~d~~~~~~GfR~ie~~~~~~~lNGk~i~lrGvn~h~~~p~~g~~~~~e~~~~dl 80 (759)
+|+||||++|+||+|.++|.+. |.++|+...+||||+|+++.+.|+||||||++||+|+|+++|..|+...++.|++||
T Consensus 249 ~p~lWsp~~P~LY~l~~~L~~~-~~~~d~~~~~iGfR~iei~~~~~~iNGkpvf~kGvnrHe~~~~~G~~~~~~~~~~dl 327 (808)
T COG3250 249 NPKLWSPEDPYLYRLVVTLKDA-NTLIDAEALRIGFRTVEIKDGLLLINGKPVFIRGVNRHEDDPILGRVTDEDAMERDL 327 (808)
T ss_pred CcccCCCCCCceEEEEEEEEeC-CceeeEEEeeeccEEEEEECCeEEECCeEEEEeeeecccCCCccccccCHHHHHHHH
Confidence 6999999999999999999964 488999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCEEEcCCCCChhHHHHHHHhcCCEEEeeccccccCcccccCCCCCCCCHHHHHHHHHHHHHHHHhcCCCceE
Q 004363 81 VLMKQNNINAVRNSHYPQHPRWYELCDLFGLYMIDEANIETHGFYFSEHLKHPTMEPSWAAAMMDRVIGMVERDKNHASI 160 (759)
Q Consensus 81 ~~mK~~g~N~vR~~h~p~~~~~~dlcDe~Gi~V~~E~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~mV~r~rNHPSI 160 (759)
++||++|+|+|||||||++++|||||||+|||||+|+++++|++. +++.|.+.+.+++++||+|+||||||
T Consensus 328 ~lmk~~n~N~vRtsHyP~~~~~ydLcDelGllV~~Ea~~~~~~~~---------~~~~~~k~~~~~i~~mver~knHPSI 398 (808)
T COG3250 328 KLMKEANMNSVRTSHYPNSEEFYDLCDELGLLVIDEAMIETHGMP---------DDPEWRKEVSEEVRRMVERDRNHPSI 398 (808)
T ss_pred HHHHHcCCCEEEecCCCCCHHHHHHHHHhCcEEEEecchhhcCCC---------CCcchhHHHHHHHHHHHHhccCCCcE
Confidence 999999999999999999999999999999999999999999864 67889999999999999999999999
Q ss_pred EEEecCCCCCCCccHHHHHHHHHhcCCCCeEEecCCCCCCCCcceeCCCCCChHHHHHHHcCCCCCCcEEE--EeccCCC
Q 004363 161 ICWSLGNEAGHGPNHSAAAGWIRGKDPSRLLHYEGGGSRTPSTDIVCPMYMRVWDIVMIAKDPTETRPLIL--YSHAMGN 238 (759)
Q Consensus 161 i~WslgNE~~~g~~~~~~~~~ik~~DptR~v~~~~~~~~~~~~Di~~~~Y~~~~~~~~~~~~~~~~kP~i~--y~h~~gn 238 (759)
||||+|||++.|.++..+..++|+.||+|+++|.+.. ...+|+.+.||........+... .+|.++ |.|+|+|
T Consensus 399 iiWs~gNE~~~g~~~~~~~~~~k~~d~~r~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~---p~p~~l~~~~~~~~n 473 (808)
T COG3250 399 IIWSLGNESGHGSNHWALYRWFKASDPTRPVQYEGRG--TEATDILSPMYERVDEILYFPGS---PRPLILCEYAHAMGN 473 (808)
T ss_pred EEEeccccccCccccHHHHHHHhhcCCccceeccCcc--ceeeecccchhhcCccccccCCC---CCCceeecchHhhcc
Confidence 9999999999999999999999999999999999874 46789999999876554444433 389999 8999999
Q ss_pred CCcCHHHHHHHHHcccCceeeeEeecCCCceeeecCCCceEEEecCCCCCCCCCcccccCCCCCCCCCCCCcHHHHHHhh
Q 004363 239 SNGNIHEYWEAIDSTFGLQGGFIWDWVDQGLLRELADGTKHWAYGGDFGDTPNDLNFCLNGLLWPDRTPHPALHEVKYVY 318 (759)
Q Consensus 239 ~~g~~~~~w~~~~~~p~~~GgfiW~~~D~~~~~~~~~g~~~~~ygg~f~~~~~d~~f~~~Glv~~dr~pkp~~~~~k~~~ 318 (759)
+.++...||..+.+++.++|+|+|+|+|+.+..+++.|..+++|+|+|++.|++..||.+|.+.++|++.|+.++.+..+
T Consensus 474 ~~~G~~~yw~~~~~~~~~~~~~~~~~~~~~~~~~~e~g~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~e~~~~~ 553 (808)
T COG3250 474 SYGGDYHYWGVFGEYPRLQGGFIWDWVDQRLIPIDETGNQAYAYGGDFGDYPNDRSFELNGLVFPDRQPNPGLKEAKVGT 553 (808)
T ss_pred CcCCceeeeehhccccccccceehhhcccccCcccccCccccccccccCCCccccchhcccccccccccCccchheeEEE
Confidence 99999999999999999999999999999999988999999999999999999999999999999999999999999999
Q ss_pred cceEEeeecc--EEEEEeccCCCCCCCeEEEEEEEeCCeEEEEEEeeCCcCCCCCEEEEEecCCCCcccCCCCCCceEEE
Q 004363 319 QAIKVSLKKG--TLKISNTNFFETTQGLEFSWVAHGDGYKLGFGILSLPLIKPHSNYEIELKSSPWYSQWNSCSAEEIFL 396 (759)
Q Consensus 319 qpi~~~~~~~--~i~v~N~~~f~~l~~~~~~w~l~~dg~~v~~g~~~~~~v~p~~~~~i~lp~~~~~~~~~~~~~~e~~l 396 (759)
+...|-..+. -+.+.|.+.|......++.|.+..+++...++.+.+-+.+|+.+.. .+... ....+ ++|
T Consensus 554 ~~~~f~~~k~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~pg~~~~-~~~~~-------~~~k~-~~l 624 (808)
T COG3250 554 QFWAFGDPKTFQGFLVTSENLFAEADRERLPKLRALLGETLGSLEWQLNDVPPGASWS-SLDEA-------LRPKA-LYL 624 (808)
T ss_pred eeeeeeccccCCceEEechhheeeeehhhhhhhhhccceEeeeEEEEeecCCCccccc-ccccc-------cCCcc-eEE
Confidence 9999864322 2889999999999999999988899999999999886777776543 33221 22334 999
Q ss_pred EEEEEeccccccccCCcEEEEEeeeeCCCCccCccccccCCCceEEEeeCCeEEEEccCcEEEEEEcCcccEEEEEECCE
Q 004363 397 TVTAKLMNSTRWAEAGHVISTAQVQLPSKRERLPHVIRTGDAIILQENLGNTIQLSHQNSWEIKFDIQTGAVESWKVEGV 476 (759)
Q Consensus 397 ~i~~~lk~~t~wa~~G~~va~~Q~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~Fdk~tG~l~s~~~~g~ 476 (759)
+.+|...+.+.|+++ +|+.||.|.... .. ....+.+..+.+. +++..+.|+|++|.+.+ +.++
T Consensus 625 ~~r~~~~~~~~~~~~---~~~~~~~l~~~~----------~~-~~~~e~~~~~~~~-~~~~~~~~~~~~g~~~~--~~d~ 687 (808)
T COG3250 625 TRRFTQPELTAWSEA---AADGQFTLSEVS----------AA-PLLVEDERLLQVE-GDGKRLQFEKQSGTLPP--LLDK 687 (808)
T ss_pred EEEEeccccchhhhh---cccceeeecccc----------cc-hhheeccceeEEe-ecCceEEeccccCcccc--cccc
Confidence 999999999999999 999999997542 11 1112223334443 45677899999999998 3443
Q ss_pred eeeccCcccceeecCCCCCCCCCCChhhHHHHHcCccceeeEEEEEEEEEeCCceEEEEEEEecCCccccchhhhhhhcc
Q 004363 477 SVMKRGIFPCFWRAPTDNDKGGGESSYYSRWRAAGIDSLVFLTKSCSIQNVTDYFVKIRVVYDGTPRVDMSSLTKLEKAK 556 (759)
Q Consensus 477 ~ll~~~~~~nfwRaptDND~g~~~~~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~ 556 (759)
.|||+|+||. ........|+-+..+++.. ...+......+++......... ..
T Consensus 688 ---------a~~~~~~~~~---~p~~~i~~w~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~s------------~~ 740 (808)
T COG3250 688 ---------AFTRAPLDNI---DPNAWIEIWKLAELNRLLL---RGHVDFDAGKVLILAQYGIESS------------GK 740 (808)
T ss_pred ---------cccccccccC---CCccceeeeehhhhhHHHH---hcccccccCceeecccceEEec------------cc
Confidence 8999999992 2333457788555444322 2222222222222211111111 11
Q ss_pred ceEEEEEEEEEecCCeEEEEEEEeeCCCCCCCcceeEEEEEecCCCCceEEEcCCCCCCchhhhcCccee
Q 004363 557 ALFEIVIDYTIYGSGNVIVECNFKPNTSDLPPLPRVGVEFHLEQSMDKIKFYGRGPFECYPDRKAAAHVD 626 (759)
Q Consensus 557 ~~~~~~~~Y~i~~~G~i~v~~~~~~~~~~~p~lpRiG~~~~lp~~~~~v~wyGrGP~EnY~DR~~aa~~G 626 (759)
........|++.++|.+.|.+++... ..|..+++|..++++..+.. +|||+||+|||+||..++..+
T Consensus 741 ~~~~~~~~~~~~~~~a~~v~~~~~~~--~~p~~~~~~~~~~~~~~~~~-~a~~~gp~~~~~~~~~a~~~~ 807 (808)
T COG3250 741 TEFGSFLIYRTAADGALLVKVDFERA--DLPDPARIGPGEQLAIKAEP-EALGLGPQENYPDRLLAACFD 807 (808)
T ss_pred cccceEEEEEEcCCcceEEEEecccc--cCCcchhhccCccccccccc-cccccCCCccccchhhhhhcc
Confidence 12446778999999999999999875 78888889999999999999 999999999999999998764
No 4
>PF02929 Bgal_small_N: Beta galactosidase small chain; InterPro: IPR004199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Beta-galactosidase enzymes (3.2.1.23 from EC) belong to several glycoside hydrolase families: GH1 from CAZY, GH2 from CAZY, GH35 from CAZY and GH42 from CAZY. Beta-galactosidase is the product of the lac operon Z gene of Escherichia coli. This enzyme catalyses the hydrolysis of the disaccharide lactose to galactose and glucose, and can also convert lactose to allolactose, the inducer of the lac operon. This domain is found in single chain beta-galactosidases, which are comprised of five domains. The active site is located in a deep pocket built around the central alpha-beta barrel, with the other domains conferring specificity for a disaccharide substrate. This entry represents domain 5 of glycoside hydrolase family 2, which contains an N-terminal loop that swings towards the active site upon the deep binding of a ligand to produce a closed conformation []. This domain is also found in the amino-terminal portion of the small chain of dimeric beta-galactosidases.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1JZ3_D 1JYY_H 1GHO_P 3VD9_B 3I3E_B 3T0B_A 3T09_C 1F4A_D 3VDC_C 3VDB_D ....
Probab=100.00 E-value=1.6e-77 Score=633.33 Aligned_cols=273 Identities=41% Similarity=0.759 Sum_probs=222.7
Q ss_pred ccCcEEEEEEcCcccEEEEEECCEeeeccCcccceeecCCCCCCCCCCChhhHHHHHcCccceeeEEEEEEEEEeCCc-e
Q 004363 453 HQNSWEIKFDIQTGAVESWKVEGVSVMKRGIFPCFWRAPTDNDKGGGESSYYSRWRAAGIDSLVFLTKSCSIQNVTDY-F 531 (759)
Q Consensus 453 ~~~~~~~~Fdk~tG~l~s~~~~g~~ll~~~~~~nfwRaptDND~g~~~~~~~~~W~~~g~~~~~~~~~~~~~~~~~~~-~ 531 (759)
++++|+++|||++|.|+||+++|++||.+||+|||||||||||++.........|+.+|++.+..++..+++...+++ .
T Consensus 3 ~g~~f~~~Fdk~~G~l~s~~~~g~~ll~~~~~~nfwRApTDND~~~~~~~~~~~W~~ag~~~~~~~~~~~~~~~~~~~~~ 82 (276)
T PF02929_consen 3 SGKDFSYVFDKKTGTLTSYKYNGKELLKRGPKPNFWRAPTDNDRGIGNPSRAARWKDAGLDRLVTRVRSVKVEESDGDVA 82 (276)
T ss_dssp EETTEEEEEETTTTCEEEEEETTEEEECEEEEEE---S--TCCCTTTTSHSCHHHHHTTTTCEEEEEEEEEEEEEESESE
T ss_pred ccCCEEEEEECCCCeEEEEEECCEEeecCCCcccEEeCCCCCccccccchhHHHHHHcCccceeeEEeEEEEEecCCCce
Confidence 357899999999999999999999999999999999999999999887777789999999999999988888766544 3
Q ss_pred EEEEEEEecCCccccchhhhhhhccceEEEEEEEEEecCCeEEEEEEEeeCCCCCCCcceeEEEEEecCCCCceEEEcCC
Q 004363 532 VKIRVVYDGTPRVDMSSLTKLEKAKALFEIVIDYTIYGSGNVIVECNFKPNTSDLPPLPRVGVEFHLEQSMDKIKFYGRG 611 (759)
Q Consensus 532 v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~i~~~G~i~v~~~~~~~~~~~p~lpRiG~~~~lp~~~~~v~wyGrG 611 (759)
|+|...+..+.. ...+.++++|+|++||+|.|++++.|. ..+|.||||||+|.||++|++|+|||||
T Consensus 83 v~v~~~~~~~~~------------~~~~~~~~~y~i~~dG~i~v~~~~~~~-~~~p~lpRiGl~~~Lp~~~~~v~wyGrG 149 (276)
T PF02929_consen 83 VTVTARYAAPNK------------SWNFEVTITYTIYADGTIKVDMTFEPS-GDLPELPRIGLQFQLPKSFDNVEWYGRG 149 (276)
T ss_dssp EEEEEEEEETTC------------CEEEEEEEEEEEETTSEEEEEEEEEEE-TTSSC-SEEEEEEEEETTEEEEEEEEEE
T ss_pred EEEEEEEeCCCc------------ceEEEEEEEEEEcCCCEEEEEEEEEeC-CCCCCccceEEEEEecCcceeEEEECCC
Confidence 556555544322 235889999999999999999999998 7799999999999999999999999999
Q ss_pred CCCCchhhhcCcceeeeccccccccccccCccCCCCccceEEEEEeeCCcceEEEEeccCCCCeEEEecCCCHHHHhccC
Q 004363 612 PFECYPDRKAAAHVDVYEQIVGDMHVPYIVPGECAARADVRWVTFQNKEGIGIYASMYSSSPPMQLNASYYTTTELDRAT 691 (759)
Q Consensus 612 P~EnY~DR~~aa~~G~y~~tv~e~~~pYv~PQEnGnr~dvrw~~l~~~~g~gl~~~~~~~~~~f~fsa~~Yt~~~L~~a~ 691 (759)
|+|||+|||+||.+|+|+++|++||+||++|||||||+||||++|+|++|.||++ .++.+|+|||+|||+++|++|+
T Consensus 150 P~EnY~DRk~~a~~G~y~~~v~~~~~~Y~~PQE~Gnr~dvrw~~l~~~~g~gl~v---~~~~~~~fsa~~yt~~~L~~a~ 226 (276)
T PF02929_consen 150 PHENYPDRKTGAFLGIYESTVDDMYTPYIRPQENGNRTDVRWLSLTDSDGGGLLV---TSDDPFSFSASPYTPEELEEAK 226 (276)
T ss_dssp SS--BTTB-SSSEEEEEEEEHHHHS---SS--S---EEEEEEEEEEETTSEEEEE---EEEEEEEEEEESS-HHHHHH-S
T ss_pred CCCCCccccccCCcCEEcCcHHHcCcCCCCcccCCCcceeEEEEEEcCCCCeEEE---ecCCCeEEEEEeCchhHhhhcC
Confidence 9999999999999999999999999999999999999999999999999999954 3457999999999999999999
Q ss_pred CCCCCcCCCeEEEEEccccccccCCCCCCCCCCCCccccCCcEEEEEEEE
Q 004363 692 HNEQLVKEDKIEVHLDHKHMGLGGDDSWTPCVHDKYLVPAVAYSFSIRLS 741 (759)
Q Consensus 692 H~~eL~~~~~~~l~iD~~q~GvGg~~ScGp~~~~~Y~l~~~~y~~~f~i~ 741 (759)
|.+||++++.|+||||++||||||++||||.+||+|+|++++|+|+|+|+
T Consensus 227 H~~eL~~~~~~~l~lD~~q~GvG~d~ScGp~~~~~Y~l~~~~~~~~f~l~ 276 (276)
T PF02929_consen 227 HTYELPKSDRTYLNLDYAQRGVGGDNSCGPDVLPEYRLKPKPYEFSFTLR 276 (276)
T ss_dssp SGGGSEEESEEEEEEEEEE-----STTSS--S-GGGS-CSSEEEEEEEE-
T ss_pred ccccCCCCCCEEEEEecccCCcccccccCCCCCHHHCcCCccEEEEEEEC
Confidence 99999999999999999999999978999999999999999999999985
No 5
>PRK10150 beta-D-glucuronidase; Provisional
Probab=100.00 E-value=6.8e-59 Score=544.43 Aligned_cols=301 Identities=29% Similarity=0.460 Sum_probs=251.0
Q ss_pred CCCCCCCCCCCeEEEEEEEEeCCCCeEEEEEEEEeeEEEEEeCCEEEECCEEEEEEeeecCCCCCCCCCCCCHHHHHHHH
Q 004363 1 MPRLWSAEQPNLYTLVVILKHASGPVVDCESCLVGIRQVSKAPKQLLVNGNPVVIRGVNRHEHHPRVGKTNIESCMVKDL 80 (759)
Q Consensus 1 ~p~lWs~e~P~LY~l~~~l~~~~g~~~d~~~~~~GfR~ie~~~~~~~lNGk~i~lrGvn~h~~~p~~g~~~~~e~~~~dl 80 (759)
+|+||||++|+||+|+++|.+ +|+++|+.+.+||||+|+++++.|+|||+||+|||+|+|++.+..|.+++++.+++||
T Consensus 241 ~p~lW~p~~P~LY~l~v~l~~-~g~~~d~~~~~~GfR~i~~~~~~f~lNG~pv~lrG~~~h~~~~~~G~a~~~~~~~~d~ 319 (604)
T PRK10150 241 NPHLWQPGEGYLYTLCVELAK-SGTECDTYPLRFGIRSVAVKGGQFLINGKPFYFKGFGKHEDADIRGKGLDEVLNVHDH 319 (604)
T ss_pred CCcccCCCCCceEEEEEEEee-CCeeEEEEEeeeEEEEEEEeCCEEEECCEEEEEEeeeccCCCCccCCcCCHHHHHHHH
Confidence 699999999999999999985 7899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCEEEcCCCCChhHHHHHHHhcCCEEEeeccccccCcccc------------cCCCCCCCCHHHHHHHHHHHH
Q 004363 81 VLMKQNNINAVRNSHYPQHPRWYELCDLFGLYMIDEANIETHGFYFS------------EHLKHPTMEPSWAAAMMDRVI 148 (759)
Q Consensus 81 ~~mK~~g~N~vR~~h~p~~~~~~dlcDe~Gi~V~~E~~~~~~g~~~~------------~~~~~~~~~~~~~~~~~~~~~ 148 (759)
++||++|+|+||+||||++++|||+|||+|||||+|+|+. |+..+ ..+.....+|+|.++++++++
T Consensus 320 ~l~K~~G~N~vR~sh~p~~~~~~~~cD~~GllV~~E~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (604)
T PRK10150 320 NLMKWIGANSFRTSHYPYSEEMLDLADRHGIVVIDETPAV--GLNLSFGAGLEAGNKPKETYSEEAVNGETQQAHLQAIR 397 (604)
T ss_pred HHHHHCCCCEEEeccCCCCHHHHHHHHhcCcEEEEecccc--cccccccccccccccccccccccccchhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999853 22110 001112234789999999999
Q ss_pred HHHHhcCCCceEEEEecCCCCCCC-----ccHHHHHHHHHhcCCCCeEEecCC-------CCCCCCcceeCC-CCCC---
Q 004363 149 GMVERDKNHASIICWSLGNEAGHG-----PNHSAAAGWIRGKDPSRLLHYEGG-------GSRTPSTDIVCP-MYMR--- 212 (759)
Q Consensus 149 ~mV~r~rNHPSIi~WslgNE~~~g-----~~~~~~~~~ik~~DptR~v~~~~~-------~~~~~~~Di~~~-~Y~~--- 212 (759)
+||+|+||||||+|||+|||+..+ ..++.|.+++|++||||||++++. ......+|++|. +|..
T Consensus 398 ~mv~r~~NHPSIi~Ws~gNE~~~~~~~~~~~~~~l~~~~k~~DptR~vt~~~~~~~~~~~~~~~~~~Dv~~~N~Y~~wy~ 477 (604)
T PRK10150 398 ELIARDKNHPSVVMWSIANEPASREQGAREYFAPLAELTRKLDPTRPVTCVNVMFATPDTDTVSDLVDVLCLNRYYGWYV 477 (604)
T ss_pred HHHHhccCCceEEEEeeccCCCccchhHHHHHHHHHHHHHhhCCCCceEEEecccCCcccccccCcccEEEEcccceecC
Confidence 999999999999999999998654 235789999999999999999863 112356899994 4431
Q ss_pred ----h--------HHHHHHHcCCCCCCcEEE--Ee-------ccCCCCCcC-------HHHHHHHHHcccCceeeeEeec
Q 004363 213 ----V--------WDIVMIAKDPTETRPLIL--YS-------HAMGNSNGN-------IHEYWEAIDSTFGLQGGFIWDW 264 (759)
Q Consensus 213 ----~--------~~~~~~~~~~~~~kP~i~--y~-------h~~gn~~g~-------~~~~w~~~~~~p~~~GgfiW~~ 264 (759)
. ..+..+.+.. +||+|+ |+ |+|+++.++ +++||+.+.++|.++|+|||+|
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~--~kP~~isEyg~~~~~~~h~~~~~~~~ee~q~~~~~~~~~~~~~~p~~~G~~iW~~ 555 (604)
T PRK10150 478 DSGDLETAEKVLEKELLAWQEKL--HKPIIITEYGADTLAGLHSMYDDMWSEEYQCAFLDMYHRVFDRVPAVVGEQVWNF 555 (604)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhc--CCCEEEEccCCccccccccCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEEee
Confidence 1 1222222222 799999 87 999999888 8899999999999999999999
Q ss_pred CCCceeeecCCCceEEEecCCCCCCCCCcccccCCCCCCCCCCCCcHHHHHHhhcceEE
Q 004363 265 VDQGLLRELADGTKHWAYGGDFGDTPNDLNFCLNGLLWPDRTPHPALHEVKYVYQAIKV 323 (759)
Q Consensus 265 ~D~~~~~~~~~g~~~~~ygg~f~~~~~d~~f~~~Glv~~dr~pkp~~~~~k~~~qpi~~ 323 (759)
+|+... .| .+.|+| ..+|||+.||+|||+++++|++|+|+.+
T Consensus 556 ~D~~~~----~g--~~~~~g-----------~~~Gl~~~dr~~k~~~~~~k~~~~~~~~ 597 (604)
T PRK10150 556 ADFATS----QG--ILRVGG-----------NKKGIFTRDRQPKSAAFLLKKRWTGIPF 597 (604)
T ss_pred eccCCC----CC--CcccCC-----------CcceeEcCCCCChHHHHHHHHHhhcCcc
Confidence 996321 11 133444 1589999999999999999999999863
No 6
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=100.00 E-value=1.1e-52 Score=451.61 Aligned_cols=284 Identities=34% Similarity=0.567 Sum_probs=227.1
Q ss_pred EEEeCCEEEECCEEEEEEeeecCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEcCCCCChhHHHHHHHhcCCEEEeecc
Q 004363 39 VSKAPKQLLVNGNPVVIRGVNRHEHHPRVGKTNIESCMVKDLVLMKQNNINAVRNSHYPQHPRWYELCDLFGLYMIDEAN 118 (759)
Q Consensus 39 ie~~~~~~~lNGk~i~lrGvn~h~~~p~~g~~~~~e~~~~dl~~mK~~g~N~vR~~h~p~~~~~~dlcDe~Gi~V~~E~~ 118 (759)
||+++++|+||||||+|||+|+|+++|..|.+++.+.+++||++||++|+|+||++|+|++|+||++|||+|||||+|+|
T Consensus 1 vev~~~~~~lNGk~~~l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~~h~p~~~~~~~~cD~~GilV~~e~~ 80 (298)
T PF02836_consen 1 VEVKDGGFYLNGKPIFLRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRTHHYPPSPRFYDLCDELGILVWQEIP 80 (298)
T ss_dssp EEEETTEEEETTEEE-EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEETTS--SHHHHHHHHHHT-EEEEE-S
T ss_pred CEEECCEEEECCEEEEEEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEcccccCcHHHHHHHhhcCCEEEEecc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCccc-ccCCCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEEEecCCCCCCCccHHHHHHHHHhcCCCCeEEecCCC
Q 004363 119 IETHGFYF-SEHLKHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAGHGPNHSAAAGWIRGKDPSRLLHYEGGG 197 (759)
Q Consensus 119 ~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~mV~r~rNHPSIi~WslgNE~~~g~~~~~~~~~ik~~DptR~v~~~~~~ 197 (759)
.++|+... .+.......++.|.+.+.+++++||+|+||||||||||+|||+.....++.|.+++|++||||||+++++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~~~~~~~~~l~~~~k~~DptRpv~~~~~~ 160 (298)
T PF02836_consen 81 LEGHGSWQDFGNCNYDADDPEFRENAEQELREMVRRDRNHPSIIMWSLGNESDYREFLKELYDLVKKLDPTRPVTYASNG 160 (298)
T ss_dssp -BSCTSSSSTSCTSCTTTSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEEESSHHHHHHHHHHHHHHHH-TTSEEEEETGT
T ss_pred ccccCccccCCccccCCCCHHHHHHHHHHHHHHHHcCcCcCchheeecCccCccccchhHHHHHHHhcCCCCceeecccc
Confidence 88777542 11112345689999999999999999999999999999999996556678999999999999999998873
Q ss_pred C----CCCCcceeCCCCCC---hHHHHHHHcC--CCCCCcEEE--EeccCCCCCcCHHHHHHHHHcccCceeeeEeecCC
Q 004363 198 S----RTPSTDIVCPMYMR---VWDIVMIAKD--PTETRPLIL--YSHAMGNSNGNIHEYWEAIDSTFGLQGGFIWDWVD 266 (759)
Q Consensus 198 ~----~~~~~Di~~~~Y~~---~~~~~~~~~~--~~~~kP~i~--y~h~~gn~~g~~~~~w~~~~~~p~~~GgfiW~~~D 266 (759)
. .....|+++.+|.. .+.+...... ....||+|+ |++.+.++.|...+++.....++..++.|+|.|.+
T Consensus 161 ~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~kP~i~sEyg~~~~~~~g~~~~~~~~~~~~~~~q~~~~~~~~~ 240 (298)
T PF02836_consen 161 WDPYVDDIIFDIYSGWYNGYGDPEDFEKYLEDWYKYPDKPIIISEYGADAYNSKGGDSEYWQLWSWYEEYQGAFIWDYQD 240 (298)
T ss_dssp SGGSTSSCEECSETTTSSSCCHHHHHHHHHHHHHHHCTS-EEEEEESEBBSST-TTHHHHHHHHHHCTTEEEEEESHSBH
T ss_pred cccccccccccccccccCCcccHHHHHHHHHhccccCCCCeEehhccccccccCCCccccccccccCchhhhhhhhhhhh
Confidence 1 12233556666765 3444444432 234899999 99999998899999999999999999999999999
Q ss_pred CceeeecCC-CceEEEecCCCCCCCCCcccccCCCCCCCCCCCCcHHHHHHhhcceE
Q 004363 267 QGLLRELAD-GTKHWAYGGDFGDTPNDLNFCLNGLLWPDRTPHPALHEVKYVYQAIK 322 (759)
Q Consensus 267 ~~~~~~~~~-g~~~~~ygg~f~~~~~d~~f~~~Glv~~dr~pkp~~~~~k~~~qpi~ 322 (759)
+........ +..+..+++||.+.++|.++|.+|||++||+||++++++|++|+||+
T Consensus 241 ~~~~~~~~~~~g~~~w~~~Df~~~~~~~~~~~nGlv~~dR~pK~~~~~~k~~~~~v~ 297 (298)
T PF02836_consen 241 QAIQRRDPYVAGEFYWTGFDFGTEPTDYEFEYNGLVDYDRRPKPAYYEYKSQWSPVQ 297 (298)
T ss_dssp HHEEEEETTESEEEEEETTTTSCSSBTGGGGSBESBETTSEBBHHHHHHHHHHHSEE
T ss_pred hhhccccccccceeeecceEeccCCCCCeeeeccEECCcCCcCHHHHHHHHHhhhhc
Confidence 877554433 33455578999998999999999999999999999999999999996
No 7
>KOG2230 consensus Predicted beta-mannosidase [Carbohydrate transport and metabolism]
Probab=99.86 E-value=6.5e-20 Score=198.25 Aligned_cols=179 Identities=19% Similarity=0.211 Sum_probs=140.5
Q ss_pred CCCCCCC---CCCCeEEEEEEEEeCCCCeEEEEEEEEeeEEEEEe--------C--CEEEECCEEEEEEeeecCCCCCCC
Q 004363 1 MPRLWSA---EQPNLYTLVVILKHASGPVVDCESCLVGIRQVSKA--------P--KQLLVNGNPVVIRGVNRHEHHPRV 67 (759)
Q Consensus 1 ~p~lWs~---e~P~LY~l~~~l~~~~g~~~d~~~~~~GfR~ie~~--------~--~~~~lNGk~i~lrGvn~h~~~p~~ 67 (759)
+|.-||| +..+||.+++.. .|.+. ..++|||++|.. + -.|.+||.|++|||.|+.+..-..
T Consensus 278 ~~e~wwp~g~g~q~~y~~~v~~---gg~~~---ekki~frtvelv~~p~kp~~g~nfyfkin~~pvflkg~nwip~s~f~ 351 (867)
T KOG2230|consen 278 EPERWWPNGMGEQKLYDVVVSM---GGQVK---EKKIGFKTVELVQDPKKPEKGRNFYFKINDEPVFLKGTNWIPVSMFR 351 (867)
T ss_pred cccccCCCCCCcceeEEEEEec---Cceee---eeeeeeEEEEEeecCCCCCCCceeEEEEcCcEEEeecCCccChHHHH
Confidence 4677997 788999998876 45444 449999999973 1 267799999999999996533222
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEcCC--CCChhHHHHHHHhcCCEEEeeccccccCcccccCCCCCCCCHHHHHHHHH
Q 004363 68 GKTNIESCMVKDLVLMKQNNINAVRNSH--YPQHPRWYELCDLFGLYMIDEANIETHGFYFSEHLKHPTMEPSWAAAMMD 145 (759)
Q Consensus 68 g~~~~~e~~~~dl~~mK~~g~N~vR~~h--~p~~~~~~dlcDe~Gi~V~~E~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 145 (759)
...+-|..+.-|+-.+++|+|++|++. .-.+++||++||++|||||+++.+.|.- +| .+.+|.....+
T Consensus 352 -dr~t~~~~~~LL~Sv~e~~MN~lRVWGGGvYEsd~FY~lad~lGilVWQD~MFACAl--------YP-t~~eFl~sv~e 421 (867)
T KOG2230|consen 352 -DRENIAKTEFLLDSVAEVGMNMLRVWGGGVYESDYFYQLADSLGILVWQDMMFACAL--------YP-TNDEFLSSVRE 421 (867)
T ss_pred -hhHHHHHHHHHHHHHHHhCcceEEEecCccccchhHHHHhhhccceehhhhHHHhhc--------cc-CcHHHHHHHHH
Confidence 445778888899999999999999974 4467799999999999999999876532 33 35679999999
Q ss_pred HHHHHHHhcCCCceEEEEecCCCCC-------CCcc---------------HHHHHHHHHhcCCCCeEEecC
Q 004363 146 RVIGMVERDKNHASIICWSLGNEAG-------HGPN---------------HSAAAGWIRGKDPSRLLHYEG 195 (759)
Q Consensus 146 ~~~~mV~r~rNHPSIi~WslgNE~~-------~g~~---------------~~~~~~~ik~~DptR~v~~~~ 195 (759)
+++-.+.|++.|||||+||..||.. ++.. .+.+.++.+.-|++||....|
T Consensus 422 EV~yn~~Rls~HpSviIfsgNNENEaAl~~nWy~~sf~~~~~~~kdyvlly~~~i~el~l~~~~srPfi~SS 493 (867)
T KOG2230|consen 422 EVRYNAMRLSHHPSVIIFSGNNENEAALVQNWYGTSFERDRFESKDYVLLYANVIHELKLVSHSSRPFIVSS 493 (867)
T ss_pred HHHHHHHhhccCCeEEEEeCCCccHHHHHhhhhcccccccchhhhhhhHHHHHHHHHHHhhcCCCCCceecC
Confidence 9999999999999999999999973 3321 123556677789999976544
No 8
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=99.63 E-value=6.1e-15 Score=154.01 Aligned_cols=219 Identities=16% Similarity=0.251 Sum_probs=120.3
Q ss_pred eEEEEEeCCEEE--ECCEEEEEEeeecCCCCCC---C--CCCCCHHHHHHHHHHHHHcCCCEEEcCCCC---ChhHHHHH
Q 004363 36 IRQVSKAPKQLL--VNGNPVVIRGVNRHEHHPR---V--GKTNIESCMVKDLVLMKQNNINAVRNSHYP---QHPRWYEL 105 (759)
Q Consensus 36 fR~ie~~~~~~~--lNGk~i~lrGvn~h~~~p~---~--g~~~~~e~~~~dl~~mK~~g~N~vR~~h~p---~~~~~~dl 105 (759)
+-.|+++|.+|+ .||++|+||||.+++.... . -.-.+.+.+.||+.+||++|+|+||+.+.- +|+.+|.+
T Consensus 8 ~~pI~ikG~kff~~~~g~~F~ikGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~vdp~~nHd~CM~~ 87 (314)
T PF03198_consen 8 VPPIEIKGNKFFYSKNGTRFFIKGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYSVDPSKNHDECMSA 87 (314)
T ss_dssp S--EEEETTEEEETTT--B--EEEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES---TTS--HHHHHH
T ss_pred CCCEEEECCEeEECCCCCEEEEeeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEEeCCCCCHHHHHHH
Confidence 346899999998 8999999999999754321 0 112367999999999999999999997655 57889999
Q ss_pred HHhcCCEEEeeccccccCcccccCCCCCCCCH--HHHHHHHHHHHHHHHhcCCCceEEEEecCCCCCCCcc---------
Q 004363 106 CDLFGLYMIDEANIETHGFYFSEHLKHPTMEP--SWAAAMMDRVIGMVERDKNHASIICWSLGNEAGHGPN--------- 174 (759)
Q Consensus 106 cDe~Gi~V~~E~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~mV~r~rNHPSIi~WslgNE~~~g~~--------- 174 (759)
+++.||||+.+++...... ...+| .|...++++...+|..++++|.++.+..|||......
T Consensus 88 ~~~aGIYvi~Dl~~p~~sI--------~r~~P~~sw~~~l~~~~~~vid~fa~Y~N~LgFf~GNEVin~~~~t~aap~vK 159 (314)
T PF03198_consen 88 FADAGIYVILDLNTPNGSI--------NRSDPAPSWNTDLLDRYFAVIDAFAKYDNTLGFFAGNEVINDASNTNAAPYVK 159 (314)
T ss_dssp HHHTT-EEEEES-BTTBS----------TTS------HHHHHHHHHHHHHHTT-TTEEEEEEEESSS-STT-GGGHHHHH
T ss_pred HHhCCCEEEEecCCCCccc--------cCCCCcCCCCHHHHHHHHHHHHHhccCCceEEEEecceeecCCCCcccHHHHH
Confidence 9999999999997432211 13455 8999999999999999999999999999999976532
Q ss_pred --HHHHHHHHHhcCC-CCeEEecCCCC---------------CCCCcceeC-CCCCC----------hHHHHHHHcCCCC
Q 004363 175 --HSAAAGWIRGKDP-SRLLHYEGGGS---------------RTPSTDIVC-PMYMR----------VWDIVMIAKDPTE 225 (759)
Q Consensus 175 --~~~~~~~ik~~Dp-tR~v~~~~~~~---------------~~~~~Di~~-~~Y~~----------~~~~~~~~~~~~~ 225 (759)
...|.+++|+.-. +=||-|..+.. ....+|+++ ++|.+ .+.+.+.... .
T Consensus 160 AavRD~K~Yi~~~~~R~IPVGYsaaD~~~~r~~~a~Yl~Cg~~~~~iDf~g~N~Y~WCg~Stf~~SGy~~l~~~f~~--y 237 (314)
T PF03198_consen 160 AAVRDMKAYIKSKGYRSIPVGYSAADDAEIRQDLANYLNCGDDDERIDFFGLNSYEWCGDSTFETSGYDRLTKEFSN--Y 237 (314)
T ss_dssp HHHHHHHHHHHHSSS----EEEEE---TTTHHHHHHHTTBTT-----S-EEEEE----SS--HHHHSHHHHHHHHTT---
T ss_pred HHHHHHHHHHHhcCCCCCceeEEccCChhHHHHHHHHhcCCCcccccceeeeccceecCCCccccccHHHHHHHhhC--C
Confidence 2355667777654 23777765321 123578887 46753 1222233332 3
Q ss_pred CCcEEE--EeccCCCCCcCHHHHHHHH--HcccCceeeeEeecC
Q 004363 226 TRPLIL--YSHAMGNSNGNIHEYWEAI--DSTFGLQGGFIWDWV 265 (759)
Q Consensus 226 ~kP~i~--y~h~~gn~~g~~~~~w~~~--~~~p~~~GgfiW~~~ 265 (759)
..|+++ ||=-. ..+-.+.|--.++ .-..-..||++.+|.
T Consensus 238 ~vPvffSEyGCn~-~~pR~f~ev~aly~~~Mt~v~SGGivYEy~ 280 (314)
T PF03198_consen 238 SVPVFFSEYGCNT-VTPRTFTEVPALYSPEMTDVWSGGIVYEYF 280 (314)
T ss_dssp SS-EEEEEE---S-SSS---THHHHHTSHHHHTTEEEEEES-SB
T ss_pred CCCeEEcccCCCC-CCCccchHhHHhhCccchhheeceEEEEEe
Confidence 689988 75311 1122222211111 123567899999886
No 9
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=99.16 E-value=6.9e-10 Score=117.84 Aligned_cols=206 Identities=22% Similarity=0.323 Sum_probs=129.4
Q ss_pred ECCEEEEEEeeecCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEcCC----C--CCh------------hHHHHHHHhc
Q 004363 48 VNGNPVVIRGVNRHEHHPRVGKTNIESCMVKDLVLMKQNNINAVRNSH----Y--PQH------------PRWYELCDLF 109 (759)
Q Consensus 48 lNGk~i~lrGvn~h~~~p~~g~~~~~e~~~~dl~~mK~~g~N~vR~~h----~--p~~------------~~~~dlcDe~ 109 (759)
.||+++.++|+|.|-. +....+.+++.||++|+|+||+.- + +.+ +.++++|.++
T Consensus 3 ~~G~~v~~~G~n~~w~--------~~~~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~ 74 (281)
T PF00150_consen 3 QNGKPVNWRGFNTHWY--------NPSITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAY 74 (281)
T ss_dssp TTSEBEEEEEEEETTS--------GGGSHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHT
T ss_pred CCCCeEEeeeeecccC--------CCCCHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhC
Confidence 4899999999998711 111678999999999999999921 1 111 2589999999
Q ss_pred CCEEEeeccccccCcccccCCCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEEEecCCCCCCCc---------------c
Q 004363 110 GLYMIDEANIETHGFYFSEHLKHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAGHGP---------------N 174 (759)
Q Consensus 110 Gi~V~~E~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~mV~r~rNHPSIi~WslgNE~~~g~---------------~ 174 (759)
||+|+.++--. +++... .......+...+.+.+-++.+++++++||.|++|.|.||+.... -
T Consensus 75 gi~vild~h~~-~~w~~~--~~~~~~~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~w~~~~~~~~~~~ 151 (281)
T PF00150_consen 75 GIYVILDLHNA-PGWANG--GDGYGNNDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGGNDDANWNAQNPADWQDW 151 (281)
T ss_dssp T-EEEEEEEES-TTCSSS--TSTTTTHHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCSTTSTTTTSHHHTHHHHHH
T ss_pred CCeEEEEeccC-cccccc--ccccccchhhHHHHHhhhhhhccccCCCCcEEEEEecCCccccCCccccccccchhhhhH
Confidence 99999877321 112100 01112233344455556889999999999999999999997631 1
Q ss_pred HHHHHHHHHhcCCCCeEEecCCCC----------C---CCCcceeCC-CCCCh------------------HHHHHHHcC
Q 004363 175 HSAAAGWIRGKDPSRLLHYEGGGS----------R---TPSTDIVCP-MYMRV------------------WDIVMIAKD 222 (759)
Q Consensus 175 ~~~~~~~ik~~DptR~v~~~~~~~----------~---~~~~Di~~~-~Y~~~------------------~~~~~~~~~ 222 (759)
...+++.||+.||+++|...+... . ....++++. .|... ..+......
T Consensus 152 ~~~~~~~Ir~~~~~~~i~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~H~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (281)
T PF00150_consen 152 YQRAIDAIRAADPNHLIIVGGGGWGADPDGAAADNPNDADNNDVYSFHFYDPYDFSDQWNPGNWGDASALESSFRAALNW 231 (281)
T ss_dssp HHHHHHHHHHTTSSSEEEEEEHHHHTBHHHHHHHSTTTTTTSEEEEEEEETTTCHHTTTSTCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcceeecCCCccccccchhhhcCcccccCceeEEeeEeCCCCcCCccccccchhhhHHHHHHHHHHHH
Confidence 357789999999999998776210 0 123455554 24311 111111110
Q ss_pred -CCCCCcEEE--EeccCCCCC---cCHHHHHHHHHcccCceeeeEeecCC
Q 004363 223 -PTETRPLIL--YSHAMGNSN---GNIHEYWEAIDSTFGLQGGFIWDWVD 266 (759)
Q Consensus 223 -~~~~kP~i~--y~h~~gn~~---g~~~~~w~~~~~~p~~~GgfiW~~~D 266 (759)
....+|+++ ||....... .....+.+.+.++ .+|.+.|+|..
T Consensus 232 ~~~~g~pv~~gE~G~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~W~~~~ 279 (281)
T PF00150_consen 232 AKKNGKPVVVGEFGWSNNDGNGSTDYADAWLDYLEQN--GIGWIYWSWKP 279 (281)
T ss_dssp HHHTTSEEEEEEEESSTTTSCHHHHHHHHHHHHHHHT--TCEEEECEESS
T ss_pred HHHcCCeEEEeCcCCcCCCCCcCHHHHHHHHHHHHHC--CCeEEEEecCC
Confidence 112589999 887533331 2233455555555 67999999853
No 10
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=98.74 E-value=1.9e-08 Score=109.15 Aligned_cols=235 Identities=17% Similarity=0.221 Sum_probs=145.3
Q ss_pred HHHHHHHHHHHHHcCCCEEEcCCCC-----------C-------hhHHHHHHHhcCCEEEeecccc-cc--Ccc---ccc
Q 004363 73 ESCMVKDLVLMKQNNINAVRNSHYP-----------Q-------HPRWYELCDLFGLYMIDEANIE-TH--GFY---FSE 128 (759)
Q Consensus 73 ~e~~~~dl~~mK~~g~N~vR~~h~p-----------~-------~~~~~dlcDe~Gi~V~~E~~~~-~~--g~~---~~~ 128 (759)
.+.+++|++.|+.+|++.+|++.-- + -.+|++.|-+++|-|..-+=.. .| |.. .+.
T Consensus 25 ~~ei~~dle~a~~vg~k~lR~fiLDgEdc~d~~G~~na~s~~~y~~~fla~a~~l~lkvlitlivg~~hmgg~Nw~Ipwa 104 (587)
T COG3934 25 NREIKADLEPAGFVGVKDLRLFILDGEDCRDKEGYRNAGSNVWYAAWFLAPAGYLDLKVLITLIVGLKHMGGTNWRIPWA 104 (587)
T ss_pred hhhhhcccccccCccceeEEEEEecCcchhhhhceecccccHHHHHHHhhhcccCcceEEEEEeecccccCcceeEeecC
Confidence 5678999999999999999997211 1 1368999999999886543211 01 111 111
Q ss_pred CCCCC---CCCHHHHHHHHHHHHHHHHhcCCCceEEEEecCCCCCC-----Ccc----HHHHHHHHHhcCCCCeEEecCC
Q 004363 129 HLKHP---TMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAGH-----GPN----HSAAAGWIRGKDPSRLLHYEGG 196 (759)
Q Consensus 129 ~~~~~---~~~~~~~~~~~~~~~~mV~r~rNHPSIi~WslgNE~~~-----g~~----~~~~~~~ik~~DptR~v~~~~~ 196 (759)
...+| .-++.++..+.+.++.+|+.+|-||.|..|.+.||+.. +.+ ..+|+.+||.+||.++|.....
T Consensus 105 g~~~pdn~iyD~k~~~~~kkyvedlVk~yk~~ptI~gw~l~Ne~lv~~p~s~N~f~~w~~emy~yiK~ldd~hlvsvGD~ 184 (587)
T COG3934 105 GEQSPDNVIYDPKFRGPGKKYVEDLVKPYKLDPTIAGWALRNEPLVEAPISVNNFWDWSGEMYAYIKWLDDGHLVSVGDP 184 (587)
T ss_pred CCCCccccccchhhcccHHHHHHHHhhhhccChHHHHHHhcCCccccccCChhHHHHHHHHHHHHhhccCCCCeeecCCc
Confidence 11122 34788888888999999999999999999999999433 222 3689999999999999986543
Q ss_pred CC---------CCCCcceeCC-CCCC-hHHH---------HHHHcCC-CC-CCcEEE--Eecc--CCCCCcCHHHHHHHH
Q 004363 197 GS---------RTPSTDIVCP-MYMR-VWDI---------VMIAKDP-TE-TRPLIL--YSHA--MGNSNGNIHEYWEAI 250 (759)
Q Consensus 197 ~~---------~~~~~Di~~~-~Y~~-~~~~---------~~~~~~~-~~-~kP~i~--y~h~--~gn~~g~~~~~w~~~ 250 (759)
.. ....+|.-++ .|+. ..++ +.+++-. .. -+|+++ ||-+ .|........-|...
T Consensus 185 ~sp~~~~~pyN~r~~vDya~~hLY~hyd~sl~~r~s~~yg~~~l~i~~~~g~~pV~leefGfsta~g~e~s~ayfiw~~l 264 (587)
T COG3934 185 ASPWPQYAPYNARFYVDYAANHLYRHYDTSLVSRVSTVYGKPYLDIPTIMGWQPVNLEEFGFSTAFGQENSPAYFIWIRL 264 (587)
T ss_pred CCcccccCCcccceeeccccchhhhhccCChhheeeeeecchhhccchhcccceeeccccCCcccccccccchhhhhhhh
Confidence 21 0123454443 2310 0111 1111111 01 377777 6533 232211222234333
Q ss_pred HcccCceeeeEeecCCCceeeecCCCce-EEEecCCCCCCCCCcccccCCCCCCCCCCCCcHHHHHHhhcce
Q 004363 251 DSTFGLQGGFIWDWVDQGLLRELADGTK-HWAYGGDFGDTPNDLNFCLNGLLWPDRTPHPALHEVKYVYQAI 321 (759)
Q Consensus 251 ~~~p~~~GgfiW~~~D~~~~~~~~~g~~-~~~ygg~f~~~~~d~~f~~~Glv~~dr~pkp~~~~~k~~~qpi 321 (759)
.--.+--|+.||++.|+.+... +.+ -| .|..-+| ||+..|..+|-++.++++..+.-
T Consensus 265 al~~ggdGaLiwclsdf~~gsd---d~ey~w--------~p~el~f---giIradgpek~~a~~~~~fsn~~ 322 (587)
T COG3934 265 ALDTGGDGALIWCLSDFHLGSD---DSEYTW--------GPMELEF---GIIRADGPEKIDAMTLHIFSNNW 322 (587)
T ss_pred HHhhcCCceEEEEecCCccCCC---CCCCcc--------cccccee---eeecCCCchhhhHHHHHHhcccc
Confidence 2223445889999999976432 222 12 2555667 89999999999998888765543
No 11
>PLN03059 beta-galactosidase; Provisional
Probab=98.51 E-value=2.7e-06 Score=100.50 Aligned_cols=152 Identities=18% Similarity=0.190 Sum_probs=108.9
Q ss_pred EEEEeCCEEEECCEEEEEEeeecCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEc-----CCCCCh-----------hH
Q 004363 38 QVSKAPKQLLVNGNPVVIRGVNRHEHHPRVGKTNIESCMVKDLVLMKQNNINAVRN-----SHYPQH-----------PR 101 (759)
Q Consensus 38 ~ie~~~~~~~lNGk~i~lrGvn~h~~~p~~g~~~~~e~~~~dl~~mK~~g~N~vR~-----~h~p~~-----------~~ 101 (759)
.|+++++.|+|||+|++|-+...|. + +++++.++..|+.||++|+|+|=| .|-|.. .+
T Consensus 29 ~v~~d~~~f~idG~p~~i~sG~iHY--~----R~~p~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~G~~dF~G~~DL~~ 102 (840)
T PLN03059 29 SVSYDHRAFIINGQRRILISGSIHY--P----RSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGNYYFEDRYDLVK 102 (840)
T ss_pred EEEEeCCEEEECCEEEEEEEeCccc--C----cCCHHHHHHHHHHHHHcCCCeEEEEecccccCCCCCeeeccchHHHHH
Confidence 6899999999999999999999984 3 367999999999999999999998 354432 26
Q ss_pred HHHHHHhcCCEEEeecc-c-----cccCccccc----CCCCCCCCHHHHHHHHHHHHHHHHhcC-------CCceEEEEe
Q 004363 102 WYELCDLFGLYMIDEAN-I-----ETHGFYFSE----HLKHPTMEPSWAAAMMDRVIGMVERDK-------NHASIICWS 164 (759)
Q Consensus 102 ~~dlcDe~Gi~V~~E~~-~-----~~~g~~~~~----~~~~~~~~~~~~~~~~~~~~~mV~r~r-------NHPSIi~Ws 164 (759)
|+++|.|.||||+.-.. . +--|+..|- .....++++.|.+++.+-+.+++.+.+ |=-.|||-.
T Consensus 103 Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~~~~~i~~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQ 182 (840)
T PLN03059 103 FIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLKYVPGIEFRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQ 182 (840)
T ss_pred HHHHHHHcCCEEEecCCcceeeeecCCCCchhhhcCCCcccccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEE
Confidence 99999999999987552 1 111232221 112335688998877666666666654 334699999
Q ss_pred cCCCCCC------Cc---cHHHHHHHHHhcCCCCeEEecC
Q 004363 165 LGNEAGH------GP---NHSAAAGWIRGKDPSRLLHYEG 195 (759)
Q Consensus 165 lgNE~~~------g~---~~~~~~~~ik~~DptR~v~~~~ 195 (759)
+-||-+. +. .++.+.+.+++..-+=|.....
T Consensus 183 IENEYGs~~~~~~~~d~~Yl~~l~~~~~~~Gi~VPl~t~d 222 (840)
T PLN03059 183 IENEYGPVEWEIGAPGKAYTKWAADMAVKLGTGVPWVMCK 222 (840)
T ss_pred ecccccceecccCcchHHHHHHHHHHHHHcCCCcceEECC
Confidence 9999764 22 2456666777776665654443
No 12
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=98.45 E-value=4.9e-07 Score=100.67 Aligned_cols=101 Identities=22% Similarity=0.345 Sum_probs=71.9
Q ss_pred CHHHHHHHHHHHHHcCCCEEEcCCCC-----Ch---------hHHHHHHHhcCCEEEeecccccc-Cccc----------
Q 004363 72 IESCMVKDLVLMKQNNINAVRNSHYP-----QH---------PRWYELCDLFGLYMIDEANIETH-GFYF---------- 126 (759)
Q Consensus 72 ~~e~~~~dl~~mK~~g~N~vR~~h~p-----~~---------~~~~dlcDe~Gi~V~~E~~~~~~-g~~~---------- 126 (759)
+++.+++||++||++|+|+||+.... +. ++++++|.++||.|+.-++..+. .+..
T Consensus 8 ~~e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~~~~~ 87 (374)
T PF02449_consen 8 PEEEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFSWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEILPVD 87 (374)
T ss_dssp -CCHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCCC-B-
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEechhhccCCCCeeecHHHHHHHHHHHhccCeEEEEecccccccchhhhcccccccC
Confidence 45899999999999999999973322 11 36899999999999976653211 0100
Q ss_pred --------ccCCCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEEEecCCCCCCC
Q 004363 127 --------SEHLKHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAGHG 172 (759)
Q Consensus 127 --------~~~~~~~~~~~~~~~~~~~~~~~mV~r~rNHPSIi~WslgNE~~~g 172 (759)
......-.++|.+++.+.+-++++++++++||+|++|.+.||.++.
T Consensus 88 ~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~~ 141 (374)
T PF02449_consen 88 ADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGYH 141 (374)
T ss_dssp TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTCT
T ss_pred CCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCcC
Confidence 0000111357889888888899999999999999999999998763
No 13
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.32 E-value=3.6e-06 Score=98.03 Aligned_cols=139 Identities=19% Similarity=0.237 Sum_probs=94.3
Q ss_pred eCCEEEECCEEEEEEeeecCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEc------CCCCC---------hhHHHHHH
Q 004363 42 APKQLLVNGNPVVIRGVNRHEHHPRVGKTNIESCMVKDLVLMKQNNINAVRN------SHYPQ---------HPRWYELC 106 (759)
Q Consensus 42 ~~~~~~lNGk~i~lrGvn~h~~~p~~g~~~~~e~~~~dl~~mK~~g~N~vR~------~h~p~---------~~~~~dlc 106 (759)
+...+.+.|+++.+.|.++|... .+++.+..||+.||++|+|+||+ .|-|. +..|++++
T Consensus 4 ~~~~~~~dg~~~~l~gG~y~p~~------~p~~~w~ddl~~mk~~G~N~V~ig~faW~~~eP~eG~fdf~~~D~~~l~~a 77 (673)
T COG1874 4 DGYSFIRDGRRILLYGGDYYPER------WPRETWMDDLRKMKALGLNTVRIGYFAWNLHEPEEGKFDFTWLDEIFLERA 77 (673)
T ss_pred cccceeeCCceeEEeccccChHH------CCHHHHHHHHHHHHHhCCCeeEeeeEEeeccCccccccCcccchHHHHHHH
Confidence 45678999999999999986432 44699999999999999999999 23332 23479999
Q ss_pred HhcCCEEEeec-ccc-ccCccccc------------------CCCCCCCCHHHHHHHHHHHHHHHHh-cCCCceEEEEec
Q 004363 107 DLFGLYMIDEA-NIE-THGFYFSE------------------HLKHPTMEPSWAAAMMDRVIGMVER-DKNHASIICWSL 165 (759)
Q Consensus 107 De~Gi~V~~E~-~~~-~~g~~~~~------------------~~~~~~~~~~~~~~~~~~~~~mV~r-~rNHPSIi~Wsl 165 (759)
...||+|+.-. |.. ++.|.... ...+-...+.+++....-++.+.+| +.|||+|++|-+
T Consensus 78 ~~~Gl~vil~t~P~g~~P~Wl~~~~PeiL~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~~~~~~~v~~w~~ 157 (673)
T COG1874 78 YKAGLYVILRTGPTGAPPAWLAKKYPEILAVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERLYGNGPAVITWQN 157 (673)
T ss_pred HhcCceEEEecCCCCCCchHHhcCChhheEecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHHhccCCceeEEEc
Confidence 99999999877 621 11111000 0001123455555544445668888 999999999999
Q ss_pred CCCCCC-Ccc---HH-HHHHHHHhcC
Q 004363 166 GNEAGH-GPN---HS-AAAGWIRGKD 186 (759)
Q Consensus 166 gNE~~~-g~~---~~-~~~~~ik~~D 186 (759)
.||-+. ++. .+ ....|+|+-.
T Consensus 158 dneY~~~~~~~~~~~~~f~~wLk~~y 183 (673)
T COG1874 158 DNEYGGHPCYCDYCQAAFRLWLKKGY 183 (673)
T ss_pred cCccCCccccccccHHHHHHHHHhCc
Confidence 998765 332 22 2334666543
No 14
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=98.19 E-value=1.3e-05 Score=87.07 Aligned_cols=143 Identities=22% Similarity=0.231 Sum_probs=89.7
Q ss_pred EEEECCEEEEEEeeecCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEcC-----CCCCh-----------hHHHHHHHh
Q 004363 45 QLLVNGNPVVIRGVNRHEHHPRVGKTNIESCMVKDLVLMKQNNINAVRNS-----HYPQH-----------PRWYELCDL 108 (759)
Q Consensus 45 ~~~lNGk~i~lrGvn~h~~~p~~g~~~~~e~~~~dl~~mK~~g~N~vR~~-----h~p~~-----------~~~~dlcDe 108 (759)
.|+|||||++|-+.-.|.. +++++.++..|+.||++|+|+|-+. |-|.. ..|+++|.+
T Consensus 1 ~~~~~g~~~~~~~Ge~hy~------r~p~~~W~~~l~k~ka~G~n~v~~yv~W~~he~~~g~~df~g~~dl~~f~~~a~~ 74 (319)
T PF01301_consen 1 SFLIDGKPFFILSGEFHYF------RIPPEYWRDRLQKMKAAGLNTVSTYVPWNLHEPEEGQFDFTGNRDLDRFLDLAQE 74 (319)
T ss_dssp CEEETTEEE-EEEEEE-GG------GS-GGGHHHHHHHHHHTT-SEEEEE--HHHHSSBTTB---SGGG-HHHHHHHHHH
T ss_pred CeEECCEEEEEEEeeeccc------cCChhHHHHHHHHHHhCCcceEEEeccccccCCCCCcccccchhhHHHHHHHHHH
Confidence 4899999999999998743 4568999999999999999999992 33321 369999999
Q ss_pred cCCEEEeecccccc------Cccccc----CCCCCCCCHHHHHHHHHHHHHHHHhcCCC-----ceEEEEecCCCCCCCc
Q 004363 109 FGLYMIDEANIETH------GFYFSE----HLKHPTMEPSWAAAMMDRVIGMVERDKNH-----ASIICWSLGNEAGHGP 173 (759)
Q Consensus 109 ~Gi~V~~E~~~~~~------g~~~~~----~~~~~~~~~~~~~~~~~~~~~mV~r~rNH-----PSIi~WslgNE~~~g~ 173 (759)
.||+|+.-..=-.+ |+..|- ......+++.|.+++.+-++.+.+..+.| -.|||-.+-||.+...
T Consensus 75 ~gl~vilrpGpyi~aE~~~gG~P~Wl~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGpII~vQvENEyg~~~ 154 (319)
T PF01301_consen 75 NGLYVILRPGPYICAEWDNGGLPAWLLRKPDIRLRTNDPPFLEAVERWYRALAKIIKPLQYTNGGPIIMVQVENEYGSYG 154 (319)
T ss_dssp TT-EEEEEEES---TTBGGGG--GGGGGSTTS-SSSS-HHHHHHHHHHHHHHHHHHGGGBGGGTSSEEEEEESSSGGCTS
T ss_pred cCcEEEecccceecccccchhhhhhhhccccccccccchhHHHHHHHHHHHHHHHHHhhhhcCCCceehhhhhhhhCCCc
Confidence 99999876531111 122111 12234578888887766555555544443 3599999999988433
Q ss_pred c----HHHHHHHHHhcCCCCeEEe
Q 004363 174 N----HSAAAGWIRGKDPSRLLHY 193 (759)
Q Consensus 174 ~----~~~~~~~ik~~DptR~v~~ 193 (759)
. ++.+.+..++.=++-++.+
T Consensus 155 ~~~~Y~~~l~~~~~~~g~~~~~~~ 178 (319)
T PF01301_consen 155 TDRAYMEALKDAYRDWGIDPVLLY 178 (319)
T ss_dssp S-HHHHHHHHHHHHHTT-SSSBEE
T ss_pred ccHhHHHHHHHHHHHhhCccceee
Confidence 2 3455555555433333333
No 15
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=98.05 E-value=5.8e-05 Score=74.08 Aligned_cols=118 Identities=13% Similarity=0.237 Sum_probs=86.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEc--------CCCCCh--------------hHHHHHHHhcCCEEEeeccccccCccc
Q 004363 69 KTNIESCMVKDLVLMKQNNINAVRN--------SHYPQH--------------PRWYELCDLFGLYMIDEANIETHGFYF 126 (759)
Q Consensus 69 ~~~~~e~~~~dl~~mK~~g~N~vR~--------~h~p~~--------------~~~~dlcDe~Gi~V~~E~~~~~~g~~~ 126 (759)
...++++++++++.||++||++|=+ ..||.. +.++++||++||-|+..++... .+.
T Consensus 15 ~~~~~~~W~~~~~~m~~~GidtlIlq~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~~-~~w- 92 (166)
T PF14488_consen 15 QNWTPAQWREEFRAMKAIGIDTLILQWTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYFDP-DYW- 92 (166)
T ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEEEeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCCCc-hhh-
Confidence 4678999999999999999999843 123321 3589999999999999876321 111
Q ss_pred ccCCCCCCCCHHHHHHHH-HHHHHHHHhcCCCceEEEEecCCCCCCCc-----cHHHHHHHHHhcCCCCeEEec
Q 004363 127 SEHLKHPTMEPSWAAAMM-DRVIGMVERDKNHASIICWSLGNEAGHGP-----NHSAAAGWIRGKDPSRLLHYE 194 (759)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~-~~~~~mV~r~rNHPSIi~WslgNE~~~g~-----~~~~~~~~ik~~DptR~v~~~ 194 (759)
. ..+.+|..... .-+.++..++.+|||+-.|=+-.|..... .++.+..++|++-|..||...
T Consensus 93 ----~--~~~~~~~~~~~~~v~~el~~~yg~h~sf~GWYip~E~~~~~~~~~~~~~~l~~~lk~~s~~~Pv~IS 160 (166)
T PF14488_consen 93 ----D--QGDLDWEAERNKQVADELWQRYGHHPSFYGWYIPYEIDDYNWNAPERFALLGKYLKQISPGKPVMIS 160 (166)
T ss_pred ----h--ccCHHHHHHHHHHHHHHHHHHHcCCCCCceEEEecccCCcccchHHHHHHHHHHHHHhCCCCCeEEe
Confidence 1 24555633322 24567888999999999999999997542 256788999999999998754
No 16
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=97.59 E-value=9.5e-05 Score=64.68 Aligned_cols=46 Identities=30% Similarity=0.420 Sum_probs=32.2
Q ss_pred HHHhcCCCceEEEEecCCC-CCC-C--------c--------cHHHHHHHHHhcCCCCeEEecC
Q 004363 150 MVERDKNHASIICWSLGNE-AGH-G--------P--------NHSAAAGWIRGKDPSRLLHYEG 195 (759)
Q Consensus 150 mV~r~rNHPSIi~WslgNE-~~~-g--------~--------~~~~~~~~ik~~DptR~v~~~~ 195 (759)
+|.++++||.|++|.++|| ... + . -++++.+++|++||++||+...
T Consensus 1 iv~~~~~~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~~pvt~g~ 64 (88)
T PF12876_consen 1 IVTRFGYDPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPSQPVTSGF 64 (88)
T ss_dssp -HHHTT-GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TTS-EE--B
T ss_pred CchhhcCCCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCCCcEEeec
Confidence 4789999999999999999 441 1 0 1468899999999999998754
No 17
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=97.47 E-value=0.0022 Score=67.59 Aligned_cols=153 Identities=18% Similarity=0.209 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCceEEEEecCCCCCCC---------------cc-HHHHHHHHHhcCCCCeEEecCCCC--
Q 004363 137 PSWAAAMMDRVIGMVERDKNHASIICWSLGNEAGHG---------------PN-HSAAAGWIRGKDPSRLLHYEGGGS-- 198 (759)
Q Consensus 137 ~~~~~~~~~~~~~mV~r~rNHPSIi~WslgNE~~~g---------------~~-~~~~~~~ik~~DptR~v~~~~~~~-- 198 (759)
++..+++.+.+++++.|++.- |..|.+.||+... +. .....+++|+.||+=.+.+..-+.
T Consensus 53 ~~~~~~~~~~i~~v~~ry~g~--i~~wdV~NE~~~~~~~~~~~~~w~~~~G~~~i~~af~~ar~~~P~a~l~~Ndy~~~~ 130 (254)
T smart00633 53 ETLLARLENHIKTVVGRYKGK--IYAWDVVNEALHDNGSGLRRSVWYQILGEDYIEKAFRYAREADPDAKLFYNDYNTEE 130 (254)
T ss_pred HHHHHHHHHHHHHHHHHhCCc--ceEEEEeeecccCCCcccccchHHHhcChHHHHHHHHHHHHhCCCCEEEEeccCCcC
Confidence 345667788899999999865 8889999996431 11 346788999999965544432100
Q ss_pred -----------------CCCCcceeCC--C----CCChHHHHHHHcCC-CCCCcEEE--EeccCCCCC----cCHHHHHH
Q 004363 199 -----------------RTPSTDIVCP--M----YMRVWDIVMIAKDP-TETRPLIL--YSHAMGNSN----GNIHEYWE 248 (759)
Q Consensus 199 -----------------~~~~~Di~~~--~----Y~~~~~~~~~~~~~-~~~kP~i~--y~h~~gn~~----g~~~~~w~ 248 (759)
....+|.++. + +++++.+.+.++.. ..++|+.+ +.-....+. ..++++..
T Consensus 131 ~~~k~~~~~~~v~~l~~~g~~iDgiGlQ~H~~~~~~~~~~~~~~l~~~~~~g~pi~iTE~dv~~~~~~~~qA~~~~~~l~ 210 (254)
T smart00633 131 PNAKRQAIYELVKKLKAKGVPIDGIGLQSHLSLGSPNIAEIRAALDRFASLGLEIQITELDISGYPNPQAQAADYEEVFK 210 (254)
T ss_pred ccHHHHHHHHHHHHHHHCCCccceeeeeeeecCCCCCHHHHHHHHHHHHHcCCceEEEEeecCCCCcHHHHHHHHHHHHH
Confidence 0112565552 1 24555565554431 12789987 433222211 12556778
Q ss_pred HHHcccCceeeeEeecCCCceeeecCCCceEEEecCCCCCCCCCcccccCCCCCCCCCCCCcHHH
Q 004363 249 AIDSTFGLQGGFIWDWVDQGLLRELADGTKHWAYGGDFGDTPNDLNFCLNGLLWPDRTPHPALHE 313 (759)
Q Consensus 249 ~~~~~p~~~GgfiW~~~D~~~~~~~~~g~~~~~ygg~f~~~~~d~~f~~~Glv~~dr~pkp~~~~ 313 (759)
++.++|.+.|-++|.+.|... |. + + ..-||++.|.+|||+++.
T Consensus 211 ~~~~~p~v~gi~~Wg~~d~~~----------W~--------~-~---~~~~L~d~~~~~kpa~~~ 253 (254)
T smart00633 211 ACLAHPAVTGVTVWGVTDKYS----------WL--------D-G---GAPLLFDANYQPKPAYWA 253 (254)
T ss_pred HHHcCCCeeEEEEeCCccCCc----------cc--------C-C---CCceeECCCCCCChhhhc
Confidence 888999999999999887522 31 0 0 113899999999999864
No 18
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=97.39 E-value=0.0006 Score=73.15 Aligned_cols=139 Identities=18% Similarity=0.177 Sum_probs=81.6
Q ss_pred ECCEEEEEEeeecCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEcCCCCC----------------------------h
Q 004363 48 VNGNPVVIRGVNRHEHHPRVGKTNIESCMVKDLVLMKQNNINAVRNSHYPQ----------------------------H 99 (759)
Q Consensus 48 lNGk~i~lrGvn~h~~~p~~g~~~~~e~~~~dl~~mK~~g~N~vR~~h~p~----------------------------~ 99 (759)
-+|+|++.-|-+-.. .-...+.+.++.-|+..|+.|||.||+.-.|. .
T Consensus 8 ~dG~Pff~lgdT~W~----~~~~~~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N 83 (289)
T PF13204_consen 8 ADGTPFFWLGDTAWS----LFHRLTREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPN 83 (289)
T ss_dssp TTS-B--EEEEE-TT----HHHH--HHHHHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT--
T ss_pred CCCCEEeehhHHHHH----HhhCCCHHHHHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCC
Confidence 699999999976422 11345678888899999999999999932111 0
Q ss_pred -------hHHHHHHHhcCCEEEeeccccccCcccc-cCCC-CCCCCHHHHHHHHHHHHHHHHhcCCCceEEEEecCCCC-
Q 004363 100 -------PRWYELCDLFGLYMIDEANIETHGFYFS-EHLK-HPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEA- 169 (759)
Q Consensus 100 -------~~~~dlcDe~Gi~V~~E~~~~~~g~~~~-~~~~-~~~~~~~~~~~~~~~~~~mV~r~rNHPSIi~WslgNE~- 169 (759)
++.++.+.++||.+-.- + .||.... +.+. .+... -.+...+.++-+|+|++..|.|+ |+++||.
T Consensus 84 ~~YF~~~d~~i~~a~~~Gi~~~lv-~--~wg~~~~~~~Wg~~~~~m--~~e~~~~Y~~yv~~Ry~~~~Nvi-W~l~gd~~ 157 (289)
T PF13204_consen 84 PAYFDHLDRRIEKANELGIEAALV-P--FWGCPYVPGTWGFGPNIM--PPENAERYGRYVVARYGAYPNVI-WILGGDYF 157 (289)
T ss_dssp --HHHHHHHHHHHHHHTT-EEEEE-S--S-HHHHH-------TTSS---HHHHHHHHHHHHHHHTT-SSEE-EEEESSS-
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEE-E--EECCccccccccccccCC--CHHHHHHHHHHHHHHHhcCCCCE-EEecCccC
Confidence 13688889999999532 2 2321110 0000 01111 12455567889999999999997 9999999
Q ss_pred CCCc---cHHHHHHHHHhcCCCCeEEecCC
Q 004363 170 GHGP---NHSAAAGWIRGKDPSRLLHYEGG 196 (759)
Q Consensus 170 ~~g~---~~~~~~~~ik~~DptR~v~~~~~ 196 (759)
.... ..++|.+.||+.||-.|+++...
T Consensus 158 ~~~~~~~~w~~~~~~i~~~dp~~L~T~H~~ 187 (289)
T PF13204_consen 158 DTEKTRADWDAMARGIKENDPYQLITIHPC 187 (289)
T ss_dssp -TTSSHHHHHHHHHHHHHH--SS-EEEEE-
T ss_pred CCCcCHHHHHHHHHHHHhhCCCCcEEEeCC
Confidence 2222 25789999999999889887654
No 19
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=96.82 E-value=0.053 Score=55.99 Aligned_cols=187 Identities=11% Similarity=0.098 Sum_probs=120.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCCEEEcCC--CCChhHHHHHHHhcCCEEEeeccccccCcccccCCCCCCCCHHHHH
Q 004363 64 HPRVGKTNIESCMVKDLVLMKQNNINAVRNSH--YPQHPRWYELCDLFGLYMIDEANIETHGFYFSEHLKHPTMEPSWAA 141 (759)
Q Consensus 64 ~p~~g~~~~~e~~~~dl~~mK~~g~N~vR~~h--~p~~~~~~dlcDe~Gi~V~~E~~~~~~g~~~~~~~~~~~~~~~~~~ 141 (759)
.+.-|..-+.++++.||+++|.... +||+.. .-.-+.++.++...||-|...+- |.++ -..
T Consensus 53 ~n~dGtCKSa~~~~sDLe~l~~~t~-~IR~Y~sDCn~le~v~pAa~~~g~kv~lGiw--------------~tdd--~~~ 115 (305)
T COG5309 53 YNDDGTCKSADQVASDLELLASYTH-SIRTYGSDCNTLENVLPAAEASGFKVFLGIW--------------PTDD--IHD 115 (305)
T ss_pred cCCCCCCcCHHHHHhHHHHhccCCc-eEEEeeccchhhhhhHHHHHhcCceEEEEEe--------------eccc--hhh
Confidence 3456888899999999999999998 999954 33346789999999999998652 1222 123
Q ss_pred HHHHHHHHHHHhcCCCceEEEEecCCCCCCCcc---------HHHHHHHHHhcCCCCeEEecCCCC-------CCCCcce
Q 004363 142 AMMDRVIGMVERDKNHASIICWSLGNEAGHGPN---------HSAAAGWIRGKDPSRLLHYEGGGS-------RTPSTDI 205 (759)
Q Consensus 142 ~~~~~~~~mV~r~rNHPSIi~WslgNE~~~g~~---------~~~~~~~ik~~DptR~v~~~~~~~-------~~~~~Di 205 (759)
+..+.+...++..-.-+.|..-++|||..++.. .......+|+.+-+-||+....+. ....+|+
T Consensus 116 ~~~~til~ay~~~~~~d~v~~v~VGnEal~r~~~tasql~~~I~~vrsav~~agy~gpV~T~dsw~~~~~np~l~~~SDf 195 (305)
T COG5309 116 AVEKTILSAYLPYNGWDDVTTVTVGNEALNRNDLTASQLIEYIDDVRSAVKEAGYDGPVTTVDSWNVVINNPELCQASDF 195 (305)
T ss_pred hHHHHHHHHHhccCCCCceEEEEechhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCCceeecccceeeeCChHHhhhhhh
Confidence 333467788888899999999999999987643 234556778888888887554321 2334565
Q ss_pred eCC---CCCCh------------HHHHHHHcCCCCCCcEEE----E---eccCCC---CCcCHHHHHHHHHcccCc--ee
Q 004363 206 VCP---MYMRV------------WDIVMIAKDPTETRPLIL----Y---SHAMGN---SNGNIHEYWEAIDSTFGL--QG 258 (759)
Q Consensus 206 ~~~---~Y~~~------------~~~~~~~~~~~~~kP~i~----y---~h~~gn---~~g~~~~~w~~~~~~p~~--~G 258 (759)
+.- -|-+. +.+++.-.....++++++ | |-..|. +..+.+.||..+-..-+- .-
T Consensus 196 ia~N~~aYwd~~~~a~~~~~f~~~q~e~vqsa~g~~k~~~v~EtGWPS~G~~~G~a~pS~anq~~~~~~i~~~~~~~G~d 275 (305)
T COG5309 196 IAANAHAYWDGQTVANAAGTFLLEQLERVQSACGTKKTVWVTETGWPSDGRTYGSAVPSVANQKIAVQEILNALRSCGYD 275 (305)
T ss_pred hhcccchhccccchhhhhhHHHHHHHHHHHHhcCCCccEEEeeccCCCCCCccCCcCCChhHHHHHHHHHHhhhhccCcc
Confidence 542 24321 222222222333488887 2 111221 346778999887653222 33
Q ss_pred eeEeecCCC
Q 004363 259 GFIWDWVDQ 267 (759)
Q Consensus 259 gfiW~~~D~ 267 (759)
-|+++-+|+
T Consensus 276 ~fvfeAFdd 284 (305)
T COG5309 276 VFVFEAFDD 284 (305)
T ss_pred EEEeeeccc
Confidence 566666665
No 20
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=96.56 E-value=0.035 Score=60.42 Aligned_cols=153 Identities=19% Similarity=0.215 Sum_probs=83.1
Q ss_pred HHHHHHHHcCCCEEEc--CCCCCh------h---HHHHHHHhcCCEEEeeccccccCcccccCCCCCC-----CCHHHHH
Q 004363 78 KDLVLMKQNNINAVRN--SHYPQH------P---RWYELCDLFGLYMIDEANIETHGFYFSEHLKHPT-----MEPSWAA 141 (759)
Q Consensus 78 ~dl~~mK~~g~N~vR~--~h~p~~------~---~~~dlcDe~Gi~V~~E~~~~~~g~~~~~~~~~~~-----~~~~~~~ 141 (759)
.-+++||++|+|+||+ +..|.. + .+..-+.++||-|+.++-.. .-|...+....|. +..+-.+
T Consensus 28 d~~~ilk~~G~N~vRlRvwv~P~~~g~~~~~~~~~~akrak~~Gm~vlldfHYS-D~WaDPg~Q~~P~aW~~~~~~~l~~ 106 (332)
T PF07745_consen 28 DLFQILKDHGVNAVRLRVWVNPYDGGYNDLEDVIALAKRAKAAGMKVLLDFHYS-DFWADPGKQNKPAAWANLSFDQLAK 106 (332)
T ss_dssp -HHHHHHHTT--EEEEEE-SS-TTTTTTSHHHHHHHHHHHHHTT-EEEEEE-SS-SS--BTTB-B--TTCTSSSHHHHHH
T ss_pred CHHHHHHhcCCCeEEEEeccCCcccccCCHHHHHHHHHHHHHCCCeEEEeeccc-CCCCCCCCCCCCccCCCCCHHHHHH
Confidence 3489999999999988 555554 2 35566677999999888421 1011011111121 2345666
Q ss_pred HHHHHHHHHHHhcCCCce-EEEEecCCCCCCC--------cc-------HHHHHHHHHhcCCCCeE--EecCCCC-----
Q 004363 142 AMMDRVIGMVERDKNHAS-IICWSLGNEAGHG--------PN-------HSAAAGWIRGKDPSRLL--HYEGGGS----- 198 (759)
Q Consensus 142 ~~~~~~~~mV~r~rNHPS-Ii~WslgNE~~~g--------~~-------~~~~~~~ik~~DptR~v--~~~~~~~----- 198 (759)
++.+..+.++..+++.-. +=|+.+|||...| .+ +.+.++.+|+.+|+=.| |.++.+.
T Consensus 107 ~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~p~~kV~lH~~~~~~~~~~~ 186 (332)
T PF07745_consen 107 AVYDYTKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVDPNIKVMLHLANGGDNDLYR 186 (332)
T ss_dssp HHHHHHHHHHHHHHHTT--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHSSTSEEEEEES-TTSHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcCCCCcEEEEECCCCchHHHH
Confidence 777788888888877644 4578999998643 12 24556889999987554 4444321
Q ss_pred --------CCCCcceeCC-CCC----ChHHHHHHHcC--CCCCCcEEE
Q 004363 199 --------RTPSTDIVCP-MYM----RVWDIVMIAKD--PTETRPLIL 231 (759)
Q Consensus 199 --------~~~~~Di~~~-~Y~----~~~~~~~~~~~--~~~~kP~i~ 231 (759)
.....|+++. .|+ .++.+...++. ...+||+++
T Consensus 187 ~~f~~l~~~g~d~DviGlSyYP~w~~~l~~l~~~l~~l~~ry~K~V~V 234 (332)
T PF07745_consen 187 WFFDNLKAAGVDFDVIGLSYYPFWHGTLEDLKNNLNDLASRYGKPVMV 234 (332)
T ss_dssp HHHHHHHHTTGG-SEEEEEE-STTST-HHHHHHHHHHHHHHHT-EEEE
T ss_pred HHHHHHHhcCCCcceEEEecCCCCcchHHHHHHHHHHHHHHhCCeeEE
Confidence 1345788884 343 24444433321 112689988
No 21
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=96.14 E-value=0.088 Score=60.88 Aligned_cols=141 Identities=18% Similarity=0.204 Sum_probs=93.6
Q ss_pred eEEEEEeCCEEEECCEEEEEEeeecCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEcC-----CCCCh-----------
Q 004363 36 IRQVSKAPKQLLVNGNPVVIRGVNRHEHHPRVGKTNIESCMVKDLVLMKQNNINAVRNS-----HYPQH----------- 99 (759)
Q Consensus 36 fR~ie~~~~~~~lNGk~i~lrGvn~h~~~p~~g~~~~~e~~~~dl~~mK~~g~N~vR~~-----h~p~~----------- 99 (759)
-..|..+++.|.+||+|+.+-....| +| +.+++.+...|+.+|++|+|+|-+. |-|..
T Consensus 17 ~~~v~yd~~~~~idG~r~~~isGsIH--Y~----R~~pe~W~~~i~k~k~~Gln~IqtYVfWn~Hep~~g~y~FsG~~Dl 90 (649)
T KOG0496|consen 17 SFNVTYDKRSLLIDGQRFILISGSIH--YP----RSTPEMWPDLIKKAKAGGLNVIQTYVFWNLHEPSPGKYDFSGRYDL 90 (649)
T ss_pred eeEEeccccceeecCCeeEEEEeccc--cc----cCChhhhHHHHHHHHhcCCceeeeeeecccccCCCCcccccchhHH
Confidence 34566788999999999999999887 44 3578999999999999999999992 44432
Q ss_pred hHHHHHHHhcCCEEEeecc-ccc----c-Cccccc----CCCCCCCCHHHHHHHHHHHHHHHHh-----cCCCceEEEEe
Q 004363 100 PRWYELCDLFGLYMIDEAN-IET----H-GFYFSE----HLKHPTMEPSWAAAMMDRVIGMVER-----DKNHASIICWS 164 (759)
Q Consensus 100 ~~~~dlcDe~Gi~V~~E~~-~~~----~-g~~~~~----~~~~~~~~~~~~~~~~~~~~~mV~r-----~rNHPSIi~Ws 164 (759)
..|+.+|.+.|+||+--++ ..| + |+..+- .....++++.|..++..-++.+|.+ .+|=-=|||=.
T Consensus 91 vkFikl~~~~GLyv~LRiGPyIcaEw~~GG~P~wL~~~pg~~~Rt~nepfk~~~~~~~~~iv~~mk~L~~~qGGPIIl~Q 170 (649)
T KOG0496|consen 91 VKFIKLIHKAGLYVILRIGPYICAEWNFGGLPWWLRNVPGIVFRTDNEPFKAEMERWTTKIVPMMKKLFASQGGPIILVQ 170 (649)
T ss_pred HHHHHHHHHCCeEEEecCCCeEEecccCCCcchhhhhCCceEEecCChHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEE
Confidence 2599999999999976553 111 1 222110 0112356777877665444444432 23444578888
Q ss_pred cCCCCCCCccHHHHHHHHHh
Q 004363 165 LGNEAGHGPNHSAAAGWIRG 184 (759)
Q Consensus 165 lgNE~~~g~~~~~~~~~ik~ 184 (759)
+-||-+ ....++.+..|+
T Consensus 171 IENEYG--~~~~~~~~~~k~ 188 (649)
T KOG0496|consen 171 IENEYG--NYLRALGAEGKS 188 (649)
T ss_pred eechhh--HHHHHHHHHHHH
Confidence 899965 333444444444
No 22
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=95.58 E-value=0.11 Score=56.67 Aligned_cols=231 Identities=16% Similarity=0.095 Sum_probs=126.3
Q ss_pred CCCCCCHHHHHHH--HHHHHHcCCCEEEcC--CC-----C--------ChhHHHHHHHhcCCEEEeeccccccCcccccC
Q 004363 67 VGKTNIESCMVKD--LVLMKQNNINAVRNS--HY-----P--------QHPRWYELCDLFGLYMIDEANIETHGFYFSEH 129 (759)
Q Consensus 67 ~g~~~~~e~~~~d--l~~mK~~g~N~vR~~--h~-----p--------~~~~~~dlcDe~Gi~V~~E~~~~~~g~~~~~~ 129 (759)
.|.+++...+..+ .+.+-...||.+=.. .. | ..+.+++.|.+.||.|--=.-+..+....+-.
T Consensus 12 ~G~av~~~~~~~~~~~~~~~~~~Fn~~t~eN~~Kw~~~e~~~g~~~~~~~D~~~~~a~~~g~~vrGH~LvW~~~~P~w~~ 91 (320)
T PF00331_consen 12 FGAAVNAQQLEDDPRYRELFAKHFNSVTPENEMKWGSIEPEPGRFNFESADAILDWARENGIKVRGHTLVWHSQTPDWVF 91 (320)
T ss_dssp EEEEEBGGGHTHHHHHHHHHHHH-SEEEESSTTSHHHHESBTTBEE-HHHHHHHHHHHHTT-EEEEEEEEESSSS-HHHH
T ss_pred EEEEechhHcCCcHHHHHHHHHhCCeeeeccccchhhhcCCCCccCccchhHHHHHHHhcCcceeeeeEEEcccccceee
Confidence 3444444434332 444445567776552 11 1 23579999999999875322221001110000
Q ss_pred CCCCCCC----HHHHHHHHHHHHHHHHhcCCCceEEEEecCCCCCCCc-----------------c-HHHHHHHHHhcCC
Q 004363 130 LKHPTME----PSWAAAMMDRVIGMVERDKNHASIICWSLGNEAGHGP-----------------N-HSAAAGWIRGKDP 187 (759)
Q Consensus 130 ~~~~~~~----~~~~~~~~~~~~~mV~r~rNHPSIi~WslgNE~~~g~-----------------~-~~~~~~~ik~~Dp 187 (759)
.....+ +...+.+.+++.+++.|+++...|..|.+-||+-.+. . ...+.+++|+.||
T Consensus 92 -~~~~~~~~~~~~~~~~l~~~I~~v~~~y~~~g~i~~WDVvNE~i~~~~~~~~~r~~~~~~~lG~~yi~~aF~~A~~~~P 170 (320)
T PF00331_consen 92 -NLANGSPDEKEELRARLENHIKTVVTRYKDKGRIYAWDVVNEAIDDDGNPGGLRDSPWYDALGPDYIADAFRAAREADP 170 (320)
T ss_dssp -TSTTSSBHHHHHHHHHHHHHHHHHHHHTTTTTTESEEEEEES-B-TTSSSSSBCTSHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred -eccCCCcccHHHHHHHHHHHHHHHHhHhccccceEEEEEeeecccCCCccccccCChhhhcccHhHHHHHHHHHHHhCC
Confidence 000112 2367777889999999999999999999999985421 1 3567889999999
Q ss_pred CCeEEecCCCCC------------------CCCcceeCC--CC---CChHHHHHHHcCC-CCCCcEEE--Ee-ccCCCC-
Q 004363 188 SRLLHYEGGGSR------------------TPSTDIVCP--MY---MRVWDIVMIAKDP-TETRPLIL--YS-HAMGNS- 239 (759)
Q Consensus 188 tR~v~~~~~~~~------------------~~~~Di~~~--~Y---~~~~~~~~~~~~~-~~~kP~i~--y~-h~~gn~- 239 (759)
+=...+..-+.. ...+|-+|. |+ ..++.+...++.. ..+.|+.+ +- +.....
T Consensus 171 ~a~L~~NDy~~~~~~k~~~~~~lv~~l~~~gvpIdgIG~Q~H~~~~~~~~~i~~~l~~~~~~Gl~i~ITElDv~~~~~~~ 250 (320)
T PF00331_consen 171 NAKLFYNDYNIESPAKRDAYLNLVKDLKARGVPIDGIGLQSHFDAGYPPEQIWNALDRFASLGLPIHITELDVRDDDNPP 250 (320)
T ss_dssp TSEEEEEESSTTSTHHHHHHHHHHHHHHHTTHCS-EEEEEEEEETTSSHHHHHHHHHHHHTTTSEEEEEEEEEESSSTTS
T ss_pred CcEEEeccccccchHHHHHHHHHHHHHHhCCCccceechhhccCCCCCHHHHHHHHHHHHHcCCceEEEeeeecCCCCCc
Confidence 644444321110 112454441 11 1244554443321 12577776 21 111111
Q ss_pred --------CcCHHHHHHHHHccc--CceeeeEeecCCCceeeecCCCceEEEecCCCCCCCCCcccccCCCCCCCCCCCC
Q 004363 240 --------NGNIHEYWEAIDSTF--GLQGGFIWDWVDQGLLRELADGTKHWAYGGDFGDTPNDLNFCLNGLLWPDRTPHP 309 (759)
Q Consensus 240 --------~g~~~~~w~~~~~~p--~~~GgfiW~~~D~~~~~~~~~g~~~~~ygg~f~~~~~d~~f~~~Glv~~dr~pkp 309 (759)
...++++.+++.++| .+.|-.+|.+.|...+..... -..-+|++.+.+|||
T Consensus 251 ~~~~~~~qA~~~~~~~~~~~~~~~~~v~git~Wg~~D~~sW~~~~~-------------------~~~~~lfd~~~~~Kp 311 (320)
T PF00331_consen 251 DAEEEEAQAEYYRDFLTACFSHPPAAVEGITWWGFTDGYSWRPDTP-------------------PDRPLLFDEDYQPKP 311 (320)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTHCTEEEEEESSSBTTGSTTGGHS-------------------EG--SSB-TTSBB-H
T ss_pred chHHHHHHHHHHHHHHHHHHhCCccCCCEEEEECCCCCCcccCCCC-------------------CCCCeeECCCcCCCH
Confidence 012356778888999 999999999998644321100 012378999999999
Q ss_pred cHHHHHHh
Q 004363 310 ALHEVKYV 317 (759)
Q Consensus 310 ~~~~~k~~ 317 (759)
+|+.+..+
T Consensus 312 a~~~~~~a 319 (320)
T PF00331_consen 312 AYDAIVDA 319 (320)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99999875
No 23
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=94.77 E-value=0.11 Score=58.72 Aligned_cols=112 Identities=21% Similarity=0.179 Sum_probs=74.1
Q ss_pred HHHHHHHHHHcCCCEEEc-----C--CCC-Chh------------HHHHHHHhcCCEEEeeccccccCccc-------cc
Q 004363 76 MVKDLVLMKQNNINAVRN-----S--HYP-QHP------------RWYELCDLFGLYMIDEANIETHGFYF-------SE 128 (759)
Q Consensus 76 ~~~dl~~mK~~g~N~vR~-----~--h~p-~~~------------~~~dlcDe~Gi~V~~E~~~~~~g~~~-------~~ 128 (759)
.+.++..||++|||+||+ + +.. ..| +..+.|.++||+|+.+. |+... ..
T Consensus 75 ~~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~----H~~~~~~~~~~~s~ 150 (407)
T COG2730 75 TEEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDL----HGYPGGNNGHEHSG 150 (407)
T ss_pred hhhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEe----cccCCCCCCcCccc
Confidence 378899999999999999 1 221 111 34777889999999986 33320 00
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEEEecCCCCCC--Cc-----cHHHHHHHH-HhcCCCCeE
Q 004363 129 HLKHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAGH--GP-----NHSAAAGWI-RGKDPSRLL 191 (759)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~mV~r~rNHPSIi~WslgNE~~~--g~-----~~~~~~~~i-k~~DptR~v 191 (759)
....-.....-.+.+.+-.+.+..|+++-+.||...+-||+.. .. ...+.++.+ +++....+.
T Consensus 151 ~~~~~~~~~~~~~~~~~~w~~ia~~f~~~~~VIg~~~~NEP~~~~~~~~w~~~~~~A~~~v~~~i~~~~~~ 221 (407)
T COG2730 151 YTSDYKEENENVEATIDIWKFIANRFKNYDTVIGFELINEPNGIVTSETWNGGDDEAYDVVRNAILSNAPH 221 (407)
T ss_pred ccccccccchhHHHHHHHHHHHHHhccCCCceeeeeeecCCcccCCccccccchHHHHHHHHhhhhhcCce
Confidence 0000001122335567778999999999999999999999973 11 124566666 577777754
No 24
>TIGR03356 BGL beta-galactosidase.
Probab=94.77 E-value=0.11 Score=59.14 Aligned_cols=92 Identities=17% Similarity=0.118 Sum_probs=68.2
Q ss_pred CHHHHHHHHHHHHHcCCCEEEcCC-----CCC-----h-------hHHHHHHHhcCCEEEeeccccccCcccccC---CC
Q 004363 72 IESCMVKDLVLMKQNNINAVRNSH-----YPQ-----H-------PRWYELCDLFGLYMIDEANIETHGFYFSEH---LK 131 (759)
Q Consensus 72 ~~e~~~~dl~~mK~~g~N~vR~~h-----~p~-----~-------~~~~dlcDe~Gi~V~~E~~~~~~g~~~~~~---~~ 131 (759)
....+++||++||++|+|++|++- .|. + ..+++.|-++||-++..+. .|..... ..
T Consensus 52 ~y~~y~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~----Hfd~P~~l~~~g 127 (427)
T TIGR03356 52 HYHRYEEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLY----HWDLPQALEDRG 127 (427)
T ss_pred HHHhHHHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeec----cCCccHHHHhcC
Confidence 468899999999999999999952 222 1 1488999999999998873 2321100 00
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCCceEEEEecCCCCC
Q 004363 132 HPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAG 170 (759)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~mV~r~rNHPSIi~WslgNE~~ 170 (759)
. -.+++..+.+.+-++.+++++.+ -|=.|..-||+.
T Consensus 128 G-w~~~~~~~~f~~ya~~~~~~~~d--~v~~w~t~NEp~ 163 (427)
T TIGR03356 128 G-WLNRDTAEWFAEYAAVVAERLGD--RVKHWITLNEPW 163 (427)
T ss_pred C-CCChHHHHHHHHHHHHHHHHhCC--cCCEEEEecCcc
Confidence 1 12466778888899999999999 477889999985
No 25
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=92.91 E-value=0.36 Score=55.50 Aligned_cols=92 Identities=14% Similarity=0.182 Sum_probs=67.9
Q ss_pred CHHHHHHHHHHHHHcCCCEEEcCC-----CC-------Ch------hHHHHHHHhcCCEEEeeccccccCcccc----cC
Q 004363 72 IESCMVKDLVLMKQNNINAVRNSH-----YP-------QH------PRWYELCDLFGLYMIDEANIETHGFYFS----EH 129 (759)
Q Consensus 72 ~~e~~~~dl~~mK~~g~N~vR~~h-----~p-------~~------~~~~dlcDe~Gi~V~~E~~~~~~g~~~~----~~ 129 (759)
.....+.||++||++|+|+.|+|- .| +. ..++|.|-++||-.+..+- | |... ..
T Consensus 67 ~Yhry~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~---H-~dlP~~L~~~ 142 (477)
T PRK15014 67 FYGHYKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLS---H-FEMPLHLVQQ 142 (477)
T ss_pred cccccHHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEee---C-CCCCHHHHHh
Confidence 457789999999999999999952 22 21 1489999999999988773 1 2110 01
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEEEecCCCCC
Q 004363 130 LKHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAG 170 (759)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~mV~r~rNHPSIi~WslgNE~~ 170 (759)
.... .+++..+.|.+.++.+++++.+. |=.|..-||+.
T Consensus 143 yGGW-~n~~~~~~F~~Ya~~~f~~fgdr--Vk~WiT~NEp~ 180 (477)
T PRK15014 143 YGSW-TNRKVVDFFVRFAEVVFERYKHK--VKYWMTFNEIN 180 (477)
T ss_pred cCCC-CChHHHHHHHHHHHHHHHHhcCc--CCEEEEecCcc
Confidence 0111 24667788888999999999988 77999999985
No 26
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=92.68 E-value=0.42 Score=54.95 Aligned_cols=91 Identities=18% Similarity=0.166 Sum_probs=67.5
Q ss_pred CHHHHHHHHHHHHHcCCCEEEcCC-----CCC------h------hHHHHHHHhcCCEEEeeccccccCccccc---CCC
Q 004363 72 IESCMVKDLVLMKQNNINAVRNSH-----YPQ------H------PRWYELCDLFGLYMIDEANIETHGFYFSE---HLK 131 (759)
Q Consensus 72 ~~e~~~~dl~~mK~~g~N~vR~~h-----~p~------~------~~~~dlcDe~Gi~V~~E~~~~~~g~~~~~---~~~ 131 (759)
....++.|+++||++|+|+.|+|- .|. . .+++|.|-++||-.+..+.- |.... ...
T Consensus 52 ~Y~ry~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H----~dlP~~L~~~G 127 (469)
T PRK13511 52 FYHRYPEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLHH----FDTPEALHSNG 127 (469)
T ss_pred hhhhhHHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecC----CCCcHHHHHcC
Confidence 468899999999999999999952 332 1 25889999999998887631 22000 001
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCCceEEEEecCCCCC
Q 004363 132 HPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAG 170 (759)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~mV~r~rNHPSIi~WslgNE~~ 170 (759)
. -.+++..+.|.+.++.+++++.+ |=.|..-||+.
T Consensus 128 G-W~n~~~v~~F~~YA~~~~~~fgd---Vk~W~T~NEP~ 162 (469)
T PRK13511 128 D-WLNRENIDHFVRYAEFCFEEFPE---VKYWTTFNEIG 162 (469)
T ss_pred C-CCCHHHHHHHHHHHHHHHHHhCC---CCEEEEccchh
Confidence 1 12456778888889999999998 89999999985
No 27
>PF06045 Rhamnogal_lyase: Rhamnogalacturonate lyase family; InterPro: IPR010325 Rhamnogalacturonate lyase degrades the rhamnogalacturonan I (RG-I) backbone of pectin []. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi.
Probab=91.92 E-value=8.5 Score=38.86 Aligned_cols=143 Identities=17% Similarity=0.264 Sum_probs=77.9
Q ss_pred CCceEEEeeCCeEEEEccCcEEEEEEcCcccEEEEEECCEeeeccCcccceeecCCCCCCCCCCChhhHHHHHcCcccee
Q 004363 437 DAIILQENLGNTIQLSHQNSWEIKFDIQTGAVESWKVEGVSVMKRGIFPCFWRAPTDNDKGGGESSYYSRWRAAGIDSLV 516 (759)
Q Consensus 437 ~~~~~~~~~~~~~~v~~~~~~~~~Fdk~tG~l~s~~~~g~~ll~~~~~~nfwRaptDND~g~~~~~~~~~W~~~g~~~~~ 516 (759)
...+++...+..+.+. ++-++++|++-.|.+++++|+|.+-|..-. ...+++| .+.-.|...|.....
T Consensus 6 ~~~V~L~~~~~~Vvld-NGiVqVtls~p~G~VtgIkYnGi~NLle~~-------n~e~nrG----YwD~~W~~~G~~~~~ 73 (203)
T PF06045_consen 6 SSGVTLTVQGRQVVLD-NGIVQVTLSKPGGIVTGIKYNGIDNLLEVA-------NKENNRG----YWDLVWNEPGSKGKF 73 (203)
T ss_pred CCCeEEEEcCCEEEEE-CCEEEEEEcCCCceEEEEEECCEehhhccc-------CcccCCc----eEEEecccCCccccc
Confidence 3456777777776664 567999999999999999999996554310 1112222 122346655544311
Q ss_pred --eEEEEEEEEEeCCceEEEEEEEecCCccccchhhhhhhccceEEEEEEEEEe-cCCeEEEEEEEeeCCCCCCC--cce
Q 004363 517 --FLTKSCSIQNVTDYFVKIRVVYDGTPRVDMSSLTKLEKAKALFEIVIDYTIY-GSGNVIVECNFKPNTSDLPP--LPR 591 (759)
Q Consensus 517 --~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~i~-~~G~i~v~~~~~~~~~~~p~--lpR 591 (759)
..-.++++...++..|.|+....-.|..+ .....+..+..|.+- ++-.+-.-.-++-. ..+|. |..
T Consensus 74 ~~~~gt~f~Vi~~te~qVevSF~r~w~~s~~--------~~~~plnIDkryVm~rG~SGfY~YAI~e~~-~~~Pa~~l~q 144 (203)
T PF06045_consen 74 DRIKGTEFSVIEQTEEQVEVSFSRTWDPSLD--------GKSVPLNIDKRYVMLRGSSGFYSYAIFEHP-AGWPAFDLGQ 144 (203)
T ss_pred cccCCcEEEEEEcCCCeEEEEEEcccCcCCC--------CCcceeEeeEEEEEecCCceEEEEEEEecC-CCCCCcccce
Confidence 12345666666667777777643222210 112345566666664 23234333333332 45563 454
Q ss_pred eEEEEEecC
Q 004363 592 VGVEFHLEQ 600 (759)
Q Consensus 592 iG~~~~lp~ 600 (759)
+=+-|.|.+
T Consensus 145 ~R~vfKl~~ 153 (203)
T PF06045_consen 145 TRIVFKLNK 153 (203)
T ss_pred eEEEEECCc
Confidence 445555554
No 28
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=91.63 E-value=0.67 Score=53.27 Aligned_cols=90 Identities=18% Similarity=0.210 Sum_probs=66.9
Q ss_pred CHHHHHHHHHHHHHcCCCEEEcCC-----CCC-----h-------hHHHHHHHhcCCEEEeeccccccCcccc----cCC
Q 004363 72 IESCMVKDLVLMKQNNINAVRNSH-----YPQ-----H-------PRWYELCDLFGLYMIDEANIETHGFYFS----EHL 130 (759)
Q Consensus 72 ~~e~~~~dl~~mK~~g~N~vR~~h-----~p~-----~-------~~~~dlcDe~Gi~V~~E~~~~~~g~~~~----~~~ 130 (759)
...+.+.||++||++|+|+.|+|- .|. . .++++.|-++||-.+..+. | |... ...
T Consensus 51 ~yhry~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~---H-~dlP~~L~~~G 126 (467)
T TIGR01233 51 FYHKYPVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLH---H-FDTPEALHSNG 126 (467)
T ss_pred hhhhHHHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEecc---C-CCCcHHHHHcC
Confidence 468899999999999999999952 332 1 1478899999999988763 1 2210 011
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCCCceEEEEecCCCCC
Q 004363 131 KHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAG 170 (759)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~mV~r~rNHPSIi~WslgNE~~ 170 (759)
. -.+++..+.|.+.++.+++++. . |=.|..-||+.
T Consensus 127 G--W~n~~~v~~F~~YA~~~f~~fg-d--Vk~WiT~NEP~ 161 (467)
T TIGR01233 127 D--FLNRENIEHFIDYAAFCFEEFP-E--VNYWTTFNEIG 161 (467)
T ss_pred C--CCCHHHHHHHHHHHHHHHHHhC-C--CCEEEEecchh
Confidence 1 1256677888889999999998 3 88999999985
No 29
>COG3534 AbfA Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]
Probab=91.05 E-value=1.9 Score=48.09 Aligned_cols=97 Identities=28% Similarity=0.430 Sum_probs=64.7
Q ss_pred CHHHHHHH-HHHHHHcCCCEEEcC--------C-----CCCh--------------------hHHHHHHHhcCCEEEeec
Q 004363 72 IESCMVKD-LVLMKQNNINAVRNS--------H-----YPQH--------------------PRWYELCDLFGLYMIDEA 117 (759)
Q Consensus 72 ~~e~~~~d-l~~mK~~g~N~vR~~--------h-----~p~~--------------------~~~~dlcDe~Gi~V~~E~ 117 (759)
+..-+++| ++++|++.+-.||.- | .|-+ .+|+++|...|.-++.-.
T Consensus 46 d~~G~RkDVle~lk~Lk~P~lR~PGGnFvs~Y~WeDGIGP~e~Rp~rldlaW~t~EtN~~Gt~EF~~~~e~iGaep~~av 125 (501)
T COG3534 46 DERGFRKDVLEALKDLKIPVLRWPGGNFVSGYHWEDGIGPREERPRRLDLAWGTTETNEFGTHEFMDWCELIGAEPYIAV 125 (501)
T ss_pred chhhhHHHHHHHHHhcCCceeecCCcccccccccccCcCchhhCchhhcccccccccccccHHHHHHHHHHhCCceEEEE
Confidence 46678888 588999999999981 1 1111 269999999999888877
Q ss_pred cccccCcccccCCCCCCCCHHHHHHHHHHHHHHHHhcCCCc------------------eEEEEecCCCCC----CCcc-
Q 004363 118 NIETHGFYFSEHLKHPTMEPSWAAAMMDRVIGMVERDKNHA------------------SIICWSLGNEAG----HGPN- 174 (759)
Q Consensus 118 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~mV~r~rNHP------------------SIi~WslgNE~~----~g~~- 174 (759)
++.+-|. +.++++|+ +-||| .|=+|++|||.. .|..
T Consensus 126 N~Gsrgv--------------------d~ar~~vE-Y~n~pggtywsdlR~~~G~~~P~nvK~w~lGNEm~GpWq~G~~~ 184 (501)
T COG3534 126 NLGSRGV--------------------DEARNWVE-YCNHPGGTYWSDLRRENGREEPWNVKYWGLGNEMDGPWQCGHKT 184 (501)
T ss_pred ecCCccH--------------------HHHHHHHH-HccCCCCChhHHHHHhcCCCCCcccceEEeccccCCCccccccc
Confidence 7655432 23344443 44555 377999999993 2221
Q ss_pred -------HHHHHHHHHhcCCCC
Q 004363 175 -------HSAAAGWIRGKDPSR 189 (759)
Q Consensus 175 -------~~~~~~~ik~~DptR 189 (759)
..+..++.|-.||+-
T Consensus 185 a~EY~~~A~e~~k~~k~~d~t~ 206 (501)
T COG3534 185 APEYGRLANEYRKYMKYFDPTI 206 (501)
T ss_pred CHHHHHHHHHHHHHHhhcCccc
Confidence 234567778888863
No 30
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=90.41 E-value=1.8 Score=45.71 Aligned_cols=112 Identities=19% Similarity=0.201 Sum_probs=64.7
Q ss_pred HHH-HHHHHHcCCCEEEc--CCCCChh----------------HHHHHHHhcCCEEEeeccccccCcccccCC---CCCC
Q 004363 77 VKD-LVLMKQNNINAVRN--SHYPQHP----------------RWYELCDLFGLYMIDEANIETHGFYFSEHL---KHPT 134 (759)
Q Consensus 77 ~~d-l~~mK~~g~N~vR~--~h~p~~~----------------~~~dlcDe~Gi~V~~E~~~~~~g~~~~~~~---~~~~ 134 (759)
++| ++.+|++|+|.||+ +..|.+. ++-.-|-.+||.|..++-.. +++.+. +.|.
T Consensus 65 ~qD~~~iLK~~GvNyvRlRvwndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFHYS----DfwaDPakQ~kPk 140 (403)
T COG3867 65 RQDALQILKNHGVNYVRLRVWNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFHYS----DFWADPAKQKKPK 140 (403)
T ss_pred HHHHHHHHHHcCcCeEEEEEecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeeccch----hhccChhhcCCcH
Confidence 344 78999999999988 4444322 24455666999999988421 111111 1110
Q ss_pred -----CCHHHHHHHHHHHHHHHHhcCCCceEE-EEecCCCCCCC--------ccHH-------HHHHHHHhcCCCCeEE
Q 004363 135 -----MEPSWAAAMMDRVIGMVERDKNHASII-CWSLGNEAGHG--------PNHS-------AAAGWIRGKDPSRLLH 192 (759)
Q Consensus 135 -----~~~~~~~~~~~~~~~mV~r~rNHPSIi-~WslgNE~~~g--------~~~~-------~~~~~ik~~DptR~v~ 192 (759)
.-..-+.+..+..+..+...++.--.. |-.+|||...| .++. +.+..+|+.||+-.|.
T Consensus 141 aW~~l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~gflwp~Ge~~~f~k~a~L~n~g~~avrev~p~ikv~ 219 (403)
T COG3867 141 AWENLNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNGGFLWPDGEGRNFDKMAALLNAGIRAVREVSPTIKVA 219 (403)
T ss_pred HhhhcCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCCceeccCCCCcChHHHHHHHHHHhhhhhhcCCCceEE
Confidence 112223334444555555555554443 45799998643 2443 4456778899987765
No 31
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=88.02 E-value=1.6 Score=50.20 Aligned_cols=96 Identities=15% Similarity=0.133 Sum_probs=66.3
Q ss_pred CHHHHHHHHHHHHHcCCCEEEcCC-----CCC------hh-------HHHHHHHhcCCEEEeeccccccCcccccCCCCC
Q 004363 72 IESCMVKDLVLMKQNNINAVRNSH-----YPQ------HP-------RWYELCDLFGLYMIDEANIETHGFYFSEHLKHP 133 (759)
Q Consensus 72 ~~e~~~~dl~~mK~~g~N~vR~~h-----~p~------~~-------~~~dlcDe~Gi~V~~E~~~~~~g~~~~~~~~~~ 133 (759)
...+++.|+++||++|+|+.|+|- .|. .+ .+++.|-++||-++..+..-.............
T Consensus 69 ~Yhry~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~~~P~~l~~~~GGW 148 (474)
T PRK09852 69 FYHRYKEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVPMHLVTEYGSW 148 (474)
T ss_pred hhhhhHHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHHHhcCCC
Confidence 467889999999999999999952 221 11 488999999999988774210000000000111
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCCceEEEEecCCCCC
Q 004363 134 TMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAG 170 (759)
Q Consensus 134 ~~~~~~~~~~~~~~~~mV~r~rNHPSIi~WslgNE~~ 170 (759)
.++...+.|.+.++.+++++.+. |=.|..-||+.
T Consensus 149 -~~~~~~~~F~~ya~~~~~~fgd~--Vk~WiTfNEPn 182 (474)
T PRK09852 149 -RNRKMVEFFSRYARTCFEAFDGL--VKYWLTFNEIN 182 (474)
T ss_pred -CCHHHHHHHHHHHHHHHHHhcCc--CCeEEeecchh
Confidence 24667788888899999999886 45799999984
No 32
>PLN02814 beta-glucosidase
Probab=87.59 E-value=2.2 Score=49.54 Aligned_cols=92 Identities=13% Similarity=0.062 Sum_probs=65.9
Q ss_pred CHHHHHHHHHHHHHcCCCEEEcCC-----CCC-----h-------hHHHHHHHhcCCEEEeeccccccCcccc----cCC
Q 004363 72 IESCMVKDLVLMKQNNINAVRNSH-----YPQ-----H-------PRWYELCDLFGLYMIDEANIETHGFYFS----EHL 130 (759)
Q Consensus 72 ~~e~~~~dl~~mK~~g~N~vR~~h-----~p~-----~-------~~~~dlcDe~Gi~V~~E~~~~~~g~~~~----~~~ 130 (759)
.....+.||++||++|+|+.|+|- .|. . .++.|.|-++||-.+..+- | |... ..+
T Consensus 75 ~Yhry~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~---H-~dlP~~L~~~y 150 (504)
T PLN02814 75 GYHKYKEDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLY---H-YDLPQSLEDEY 150 (504)
T ss_pred HHHhhHHHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEec---C-CCCCHHHHHhc
Confidence 478899999999999999999962 332 1 1588999999998887663 1 2110 000
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCCCceEEEEecCCCCC
Q 004363 131 KHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAG 170 (759)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~mV~r~rNHPSIi~WslgNE~~ 170 (759)
... .+++..+.|.+.++.+++++... |=.|..-||+.
T Consensus 151 GGW-~n~~~i~~F~~YA~~~f~~fgdr--Vk~WiT~NEP~ 187 (504)
T PLN02814 151 GGW-INRKIIEDFTAFADVCFREFGED--VKLWTTINEAT 187 (504)
T ss_pred CCc-CChhHHHHHHHHHHHHHHHhCCc--CCEEEeccccc
Confidence 111 24556677888888999988875 56899999985
No 33
>PLN02849 beta-glucosidase
Probab=87.53 E-value=2 Score=49.82 Aligned_cols=92 Identities=16% Similarity=0.115 Sum_probs=66.2
Q ss_pred CHHHHHHHHHHHHHcCCCEEEcCC-----CCC-----hh-------HHHHHHHhcCCEEEeeccccccCcccc----cCC
Q 004363 72 IESCMVKDLVLMKQNNINAVRNSH-----YPQ-----HP-------RWYELCDLFGLYMIDEANIETHGFYFS----EHL 130 (759)
Q Consensus 72 ~~e~~~~dl~~mK~~g~N~vR~~h-----~p~-----~~-------~~~dlcDe~Gi~V~~E~~~~~~g~~~~----~~~ 130 (759)
....++.||++||++|+|+.|+|- .|. .+ ++.|.|-++||-.+..+. -|... ...
T Consensus 77 ~YhrY~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~----H~dlP~~L~~~y 152 (503)
T PLN02849 77 GYHKYKEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLF----HYDHPQYLEDDY 152 (503)
T ss_pred HHHhHHHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeec----CCCCcHHHHHhc
Confidence 578899999999999999999962 332 11 589999999999888763 12200 000
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCCCceEEEEecCCCCC
Q 004363 131 KHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAG 170 (759)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~mV~r~rNHPSIi~WslgNE~~ 170 (759)
... .+++..+.+.+.++.+++++.+. |=.|..-||+.
T Consensus 153 GGW-~nr~~v~~F~~YA~~~f~~fgDr--Vk~WiT~NEP~ 189 (503)
T PLN02849 153 GGW-INRRIIKDFTAYADVCFREFGNH--VKFWTTINEAN 189 (503)
T ss_pred CCc-CCchHHHHHHHHHHHHHHHhcCc--CCEEEEecchh
Confidence 111 24556677888889999988875 56899999985
No 34
>PLN02998 beta-glucosidase
Probab=87.10 E-value=2.1 Score=49.61 Aligned_cols=92 Identities=14% Similarity=0.107 Sum_probs=65.7
Q ss_pred CHHHHHHHHHHHHHcCCCEEEcCC-----CCC-----h-------hHHHHHHHhcCCEEEeeccccccCcccc----cCC
Q 004363 72 IESCMVKDLVLMKQNNINAVRNSH-----YPQ-----H-------PRWYELCDLFGLYMIDEANIETHGFYFS----EHL 130 (759)
Q Consensus 72 ~~e~~~~dl~~mK~~g~N~vR~~h-----~p~-----~-------~~~~dlcDe~Gi~V~~E~~~~~~g~~~~----~~~ 130 (759)
....+++||++||++|+|+.|+|- .|. . .++++.|-++||-.+..+- | |... ...
T Consensus 80 ~Yhry~EDi~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~---H-~dlP~~L~~~y 155 (497)
T PLN02998 80 QYHKYKEDVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLH---H-FDLPQALEDEY 155 (497)
T ss_pred HHHhhHHHHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEec---C-CCCCHHHHHhh
Confidence 578899999999999999999962 332 1 1589999999998887663 1 2100 000
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCCCceEEEEecCCCCC
Q 004363 131 KHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAG 170 (759)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~mV~r~rNHPSIi~WslgNE~~ 170 (759)
... .+++..+.|.+.++.+++++.+. |=.|..-||+.
T Consensus 156 GGW-~n~~~v~~F~~YA~~~~~~fgdr--Vk~WiT~NEP~ 192 (497)
T PLN02998 156 GGW-LSQEIVRDFTAYADTCFKEFGDR--VSHWTTINEVN 192 (497)
T ss_pred CCc-CCchHHHHHHHHHHHHHHHhcCc--CCEEEEccCcc
Confidence 111 24456677888889999988875 56899999985
No 35
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=86.93 E-value=2.3 Score=48.12 Aligned_cols=91 Identities=20% Similarity=0.217 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHcCCCEEEcCC-----CC-------Ch------hHHHHHHHhcCCEEEeeccccccCcccc----cCC
Q 004363 73 ESCMVKDLVLMKQNNINAVRNSH-----YP-------QH------PRWYELCDLFGLYMIDEANIETHGFYFS----EHL 130 (759)
Q Consensus 73 ~e~~~~dl~~mK~~g~N~vR~~h-----~p-------~~------~~~~dlcDe~Gi~V~~E~~~~~~g~~~~----~~~ 130 (759)
....+.|+.+||+||+|+.|+|- .| +. .+++|.|-++||-.+..+. | |... ..+
T Consensus 58 YhrYkeDi~L~~emG~~~~R~SI~WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~---H-fd~P~~L~~~y 133 (460)
T COG2723 58 YHRYKEDIALAKEMGLNAFRTSIEWSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLY---H-FDLPLWLQKPY 133 (460)
T ss_pred hhhhHHHHHHHHHcCCCEEEeeeeEEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEec---c-cCCcHHHhhcc
Confidence 68899999999999999999962 22 21 2588999999999998763 1 2210 010
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCCCceEEEEecCCCCC
Q 004363 131 KHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAG 170 (759)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~mV~r~rNHPSIi~WslgNE~~ 170 (759)
... .+..-.+.+.+-++.+.+|+..- |=.|..-||+.
T Consensus 134 gGW-~nR~~i~~F~~ya~~vf~~f~dk--Vk~W~TFNE~n 170 (460)
T COG2723 134 GGW-ENRETVDAFARYAATVFERFGDK--VKYWFTFNEPN 170 (460)
T ss_pred CCc-cCHHHHHHHHHHHHHHHHHhcCc--ceEEEEecchh
Confidence 011 13344566777778888888764 66899999985
No 36
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=86.03 E-value=3 Score=48.13 Aligned_cols=92 Identities=16% Similarity=0.213 Sum_probs=65.6
Q ss_pred CHHHHHHHHHHHHHcCCCEEEcCC-----CCC-------hh------HHHHHHHhcCCEEEeeccccccCcccc----cC
Q 004363 72 IESCMVKDLVLMKQNNINAVRNSH-----YPQ-------HP------RWYELCDLFGLYMIDEANIETHGFYFS----EH 129 (759)
Q Consensus 72 ~~e~~~~dl~~mK~~g~N~vR~~h-----~p~-------~~------~~~dlcDe~Gi~V~~E~~~~~~g~~~~----~~ 129 (759)
...+.+.||++||++|+|+.|+|- .|. .+ ++++.|-++||-.+..+. | |... ..
T Consensus 65 ~Yhry~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~---H-~dlP~~L~~~ 140 (476)
T PRK09589 65 FYHRYKEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLS---H-FEMPYHLVTE 140 (476)
T ss_pred HHHhhHHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec---C-CCCCHHHHHh
Confidence 578899999999999999999962 332 11 488999999998887663 1 2210 00
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEEEecCCCCC
Q 004363 130 LKHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAG 170 (759)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~mV~r~rNHPSIi~WslgNE~~ 170 (759)
.... .+++..+.|.+.++.+++++... |=.|..-||+.
T Consensus 141 yGGW-~n~~~i~~F~~YA~~~f~~fgdr--Vk~WiT~NEp~ 178 (476)
T PRK09589 141 YGGW-RNRKLIDFFVRFAEVVFTRYKDK--VKYWMTFNEIN 178 (476)
T ss_pred cCCc-CChHHHHHHHHHHHHHHHHhcCC--CCEEEEecchh
Confidence 0111 24556677888888999988865 56899999985
No 37
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=85.73 E-value=3.2 Score=47.94 Aligned_cols=92 Identities=15% Similarity=0.192 Sum_probs=65.2
Q ss_pred CHHHHHHHHHHHHHcCCCEEEcCC-----CC-------Ch------hHHHHHHHhcCCEEEeeccccccCcccc----cC
Q 004363 72 IESCMVKDLVLMKQNNINAVRNSH-----YP-------QH------PRWYELCDLFGLYMIDEANIETHGFYFS----EH 129 (759)
Q Consensus 72 ~~e~~~~dl~~mK~~g~N~vR~~h-----~p-------~~------~~~~dlcDe~Gi~V~~E~~~~~~g~~~~----~~ 129 (759)
....++.||++||++|+|+.|+|- .| +. .+++|.|-+.||-.+..+-- |... ..
T Consensus 71 ~Yhry~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H----~dlP~~L~~~ 146 (478)
T PRK09593 71 MYHHYKEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTITH----FDCPMHLIEE 146 (478)
T ss_pred hHHhhHHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecc----cCCCHHHHhh
Confidence 578899999999999999999952 22 11 14889999999988876631 2110 00
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEEEecCCCCC
Q 004363 130 LKHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAG 170 (759)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~mV~r~rNHPSIi~WslgNE~~ 170 (759)
.... .+++..+.|.+.++.+++++.+. |=.|..-||+.
T Consensus 147 ~GGW-~n~~~v~~F~~YA~~~~~~fgdr--Vk~WiT~NEP~ 184 (478)
T PRK09593 147 YGGW-RNRKMVGFYERLCRTLFTRYKGL--VKYWLTFNEIN 184 (478)
T ss_pred cCCC-CChHHHHHHHHHHHHHHHHhcCc--CCEEEeecchh
Confidence 0111 24556677888888899988875 56899999975
No 38
>KOG2024 consensus Beta-Glucuronidase GUSB (glycosylhydrolase superfamily 2) [Carbohydrate transport and metabolism]
Probab=84.25 E-value=0.32 Score=50.28 Aligned_cols=96 Identities=15% Similarity=-0.040 Sum_probs=74.5
Q ss_pred CCCeEEEEEEEEeeEEEEEeCCEEEECCEEEEEEeeecCCCCC--CC--------CCCCCHH-HH----------HHHHH
Q 004363 23 SGPVVDCESCLVGIRQVSKAPKQLLVNGNPVVIRGVNRHEHHP--RV--------GKTNIES-CM----------VKDLV 81 (759)
Q Consensus 23 ~g~~~d~~~~~~GfR~ie~~~~~~~lNGk~i~lrGvn~h~~~p--~~--------g~~~~~e-~~----------~~dl~ 81 (759)
++..-|.+....+.|++.+-...+..+|+|+.||.++-|++.- .. |-..+-+ .+ ..|..
T Consensus 80 d~~lrdfv~~~wyer~v~vpe~w~~~~~~r~vlr~~s~H~~Aivwvng~~~~~h~gg~lP~~~~is~~~~~g~~~~~dn~ 159 (297)
T KOG2024|consen 80 DWRLRDFVGLVWYERTVTVPESWTQDLGKRVVLRIGSAHSYAIVWVNGVDALEHEGGHLPLEPDISALVFFGPLPAIDNN 159 (297)
T ss_pred CCccccceeeeEEEEEEEcchhhhhhcCCeEEEEeecccceeEEEEcceeecccccCccccchhhhhhhhccccccccCc
Confidence 5567789999999999999999999999999999999997631 11 1111111 01 12445
Q ss_pred HHHHcCCCEEEcCCCCChhHHHHHHHhcCCEEEeecc
Q 004363 82 LMKQNNINAVRNSHYPQHPRWYELCDLFGLYMIDEAN 118 (759)
Q Consensus 82 ~mK~~g~N~vR~~h~p~~~~~~dlcDe~Gi~V~~E~~ 118 (759)
+.-..+-|+.=++|+|........|+.+++.|++|.+
T Consensus 160 L~~~t~~~~~~~dffnYag~~~sv~l~t~p~vyi~~~ 196 (297)
T KOG2024|consen 160 LLSWTGPNSFCFDFFNYAGEQRSVCLYTTPVVYIEDI 196 (297)
T ss_pred ccccccCCcccccCCCchhhheeeeeccCCeEEecCc
Confidence 6677778888889999999999999999999999875
No 39
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=82.50 E-value=5.5 Score=33.60 Aligned_cols=67 Identities=19% Similarity=0.284 Sum_probs=35.4
Q ss_pred EEEEEeccCCCCCCCeEEEEEEEeCCeEEEEEEeeCCcCCCCCEEEEEecCCCCcccCCCCCCceEEEEEEEE
Q 004363 329 TLKISNTNFFETTQGLEFSWVAHGDGYKLGFGILSLPLIKPHSNYEIELKSSPWYSQWNSCSAEEIFLTVTAK 401 (759)
Q Consensus 329 ~i~v~N~~~f~~l~~~~~~w~l~~dg~~v~~g~~~~~~v~p~~~~~i~lp~~~~~~~~~~~~~~e~~l~i~~~ 401 (759)
++.|+|.- -..+.++.+...+ -+|=.+..+...++.|+||++.++.+...+ +.....++|.|++.+.
T Consensus 10 ~~tv~N~g-~~~~~~v~~~l~~-P~GW~~~~~~~~~~~l~pG~s~~~~~~V~v----p~~a~~G~y~v~~~a~ 76 (78)
T PF10633_consen 10 TLTVTNTG-TAPLTNVSLSLSL-PEGWTVSASPASVPSLPPGESVTVTFTVTV----PADAAPGTYTVTVTAR 76 (78)
T ss_dssp EEEEE--S-SS-BSS-EEEEE---TTSE---EEEEE--B-TTSEEEEEEEEEE-----TT--SEEEEEEEEEE
T ss_pred EEEEEECC-CCceeeEEEEEeC-CCCccccCCccccccCCCCCEEEEEEEEEC----CCCCCCceEEEEEEEE
Confidence 57899985 4566778887776 455433333334458999999988765331 1233457899998875
No 40
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=82.03 E-value=2.1 Score=49.11 Aligned_cols=92 Identities=20% Similarity=0.123 Sum_probs=64.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEEcCC-----CCCh-------------hHHHHHHHhcCCEEEeeccccccCccccc---CC
Q 004363 72 IESCMVKDLVLMKQNNINAVRNSH-----YPQH-------------PRWYELCDLFGLYMIDEANIETHGFYFSE---HL 130 (759)
Q Consensus 72 ~~e~~~~dl~~mK~~g~N~vR~~h-----~p~~-------------~~~~dlcDe~Gi~V~~E~~~~~~g~~~~~---~~ 130 (759)
.....+.||++||++|+|+.|+|- .|.. ..+++.|-+.||-.+..+- | |.... ..
T Consensus 56 ~y~~y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~---H-~~~P~~l~~~ 131 (455)
T PF00232_consen 56 HYHRYKEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLY---H-FDLPLWLEDY 131 (455)
T ss_dssp HHHHHHHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEE---S-S--BHHHHHH
T ss_pred chhhhhHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeeee---e-cccccceeec
Confidence 468899999999999999999953 3331 2488999999999998773 1 21000 00
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCCCceEEEEecCCCCC
Q 004363 131 KHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAG 170 (759)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~mV~r~rNHPSIi~WslgNE~~ 170 (759)
.. -.+++..+.+.+.++.+++++.+. |=.|..-||+.
T Consensus 132 gg-w~~~~~~~~F~~Ya~~~~~~~gd~--V~~w~T~NEp~ 168 (455)
T PF00232_consen 132 GG-WLNRETVDWFARYAEFVFERFGDR--VKYWITFNEPN 168 (455)
T ss_dssp TG-GGSTHHHHHHHHHHHHHHHHHTTT--BSEEEEEETHH
T ss_pred cc-ccCHHHHHHHHHHHHHHHHHhCCC--cceEEeccccc
Confidence 00 124566788888899999999876 66799999983
No 41
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=76.43 E-value=9.3 Score=42.83 Aligned_cols=77 Identities=13% Similarity=0.271 Sum_probs=56.4
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEcCCCCC-------hhHHHHHHHhcCCEEEeeccccccCcccccCCCCCCCCHHHHHH
Q 004363 70 TNIESCMVKDLVLMKQNNINAVRNSHYPQ-------HPRWYELCDLFGLYMIDEANIETHGFYFSEHLKHPTMEPSWAAA 142 (759)
Q Consensus 70 ~~~~e~~~~dl~~mK~~g~N~vR~~h~p~-------~~~~~dlcDe~Gi~V~~E~~~~~~g~~~~~~~~~~~~~~~~~~~ 142 (759)
..+.+.+++||+++|++||...=+-.... -...|++|++.|+.++--+++..-+. |..
T Consensus 13 ~yt~~dw~~di~~A~~~GIDgFaLNig~~d~~~~~~l~~a~~AA~~~gFKlf~SfD~~~~~~--------------~~~- 77 (386)
T PF03659_consen 13 NYTQEDWEADIRLAQAAGIDGFALNIGSSDSWQPDQLADAYQAAEAVGFKLFFSFDMNSLGP--------------WSQ- 77 (386)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecccCCcccHHHHHHHHHHHHhcCCEEEEEecccCCCC--------------CCH-
Confidence 34789999999999999999866533311 13589999999999987665321110 111
Q ss_pred HHHHHHHHHHhcCCCceEEEE
Q 004363 143 MMDRVIGMVERDKNHASIICW 163 (759)
Q Consensus 143 ~~~~~~~mV~r~rNHPSIi~W 163 (759)
+++.++|+++.+||+-+.+
T Consensus 78 --~~~~~~i~~y~~~pa~~~~ 96 (386)
T PF03659_consen 78 --DELIALIKKYAGHPAYFRY 96 (386)
T ss_pred --HHHHHHHHHHcCChhHEeE
Confidence 6789999999999998764
No 42
>COG1470 Predicted membrane protein [Function unknown]
Probab=74.07 E-value=15 Score=41.42 Aligned_cols=62 Identities=19% Similarity=0.341 Sum_probs=42.7
Q ss_pred EEEEEeccCCCCCCCeEEE------EEEEeCCeEEEEEEeeCCcCCCCCEEEEEecCCCCcccCCCCCCceEEEEEEEEe
Q 004363 329 TLKISNTNFFETTQGLEFS------WVAHGDGYKLGFGILSLPLIKPHSNYEIELKSSPWYSQWNSCSAEEIFLTVTAKL 402 (759)
Q Consensus 329 ~i~v~N~~~f~~l~~~~~~------w~l~~dg~~v~~g~~~~~~v~p~~~~~i~lp~~~~~~~~~~~~~~e~~l~i~~~l 402 (759)
++.|+|.= -.+|.++.+. |++..++. .+|+++||++.++.|... .++....++|+++|+++.
T Consensus 402 ~i~I~NsG-na~LtdIkl~v~~PqgWei~Vd~~-------~I~sL~pge~~tV~ltI~----vP~~a~aGdY~i~i~~ks 469 (513)
T COG1470 402 RISIENSG-NAPLTDIKLTVNGPQGWEIEVDES-------TIPSLEPGESKTVSLTIT----VPEDAGAGDYRITITAKS 469 (513)
T ss_pred EEEEEecC-CCccceeeEEecCCccceEEECcc-------cccccCCCCcceEEEEEE----cCCCCCCCcEEEEEEEee
Confidence 57899985 5677777664 65554443 236899999998876522 122445689999999874
No 43
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=73.10 E-value=1.5e+02 Score=32.36 Aligned_cols=200 Identities=16% Similarity=0.135 Sum_probs=105.7
Q ss_pred hhHHHHHHHhcCCEEEeeccccccCc-ccccCCCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEEEecCCCCCC------
Q 004363 99 HPRWYELCDLFGLYMIDEANIETHGF-YFSEHLKHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAGH------ 171 (759)
Q Consensus 99 ~~~~~dlcDe~Gi~V~~E~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~mV~r~rNHPSIi~WslgNE~~~------ 171 (759)
.+...+.|.++||-+-- -.+-.|.. ..|- .......+...+.+.+.+..++.|+|+. |+.|.+-||+-.
T Consensus 84 AD~ia~FAr~h~m~lhG-HtLvW~~q~P~W~-~~~e~~~~~~~~~~e~hI~tV~~rYkg~--~~sWDVVNE~vdd~g~~R 159 (345)
T COG3693 84 ADAIANFARKHNMPLHG-HTLVWHSQVPDWL-FGDELSKEALAKMVEEHIKTVVGRYKGS--VASWDVVNEAVDDQGSLR 159 (345)
T ss_pred hHHHHHHHHHcCCeecc-ceeeecccCCchh-hccccChHHHHHHHHHHHHHHHHhccCc--eeEEEecccccCCCchhh
Confidence 45689999999975421 11100110 0000 0011223556667777889999999987 999999999843
Q ss_pred ---------Ccc-HHHHHHHHHhcCCC-CeEEecC--CCC----------------CCCCcceeC------CCCCChHHH
Q 004363 172 ---------GPN-HSAAAGWIRGKDPS-RLLHYEG--GGS----------------RTPSTDIVC------PMYMRVWDI 216 (759)
Q Consensus 172 ---------g~~-~~~~~~~ik~~Dpt-R~v~~~~--~~~----------------~~~~~Di~~------~~Y~~~~~~ 216 (759)
|+. ......++|+.||. +++.-+= .+. ...-+|-+| ..++.++.+
T Consensus 160 ~s~w~~~~~gpd~I~~aF~~AreadP~AkL~~NDY~ie~~~~kr~~~~nlI~~LkekG~pIDgiG~QsH~~~~~~~~~~~ 239 (345)
T COG3693 160 RSAWYDGGTGPDYIKLAFHIAREADPDAKLVINDYSIEGNPAKRNYVLNLIEELKEKGAPIDGIGIQSHFSGDGPSIEKM 239 (345)
T ss_pred hhhhhccCCccHHHHHHHHHHHhhCCCceEEeecccccCChHHHHHHHHHHHHHHHCCCCccceeeeeeecCCCCCHHHH
Confidence 111 35567889999996 5554211 100 011134333 124444443
Q ss_pred H----HHHcCCCCCCcEEE-E--eccCCCCCcCHHHH----------HHHHHcccC-ceeeeEeecCCCceeeecCCCce
Q 004363 217 V----MIAKDPTETRPLIL-Y--SHAMGNSNGNIHEY----------WEAIDSTFG-LQGGFIWDWVDQGLLRELADGTK 278 (759)
Q Consensus 217 ~----~~~~~~~~~kP~i~-y--~h~~gn~~g~~~~~----------w~~~~~~p~-~~GgfiW~~~D~~~~~~~~~g~~ 278 (759)
. .+.+. .-|+++ - -+-.+.-++.-+.+ ...+...+. +-+-.+|-..|+-.+....+
T Consensus 240 ~~a~~~~~k~---Gl~i~VTELD~~~~~P~~~~p~~~~~~~~~~~~~f~~~~~~~~~v~~it~WGi~D~ySWl~g~~--- 313 (345)
T COG3693 240 RAALLKFSKL---GLPIYVTELDMSDYTPDSGAPRLYLQKAASRAKAFLLLLLNPNQVKAITFWGITDRYSWLRGRD--- 313 (345)
T ss_pred HHHHHHHhhc---CCCceEEEeeeeccCCCCccHHHHHHHHHHHHHHHHHHHhcccccceEEEeeeccCcccccCCc---
Confidence 3 33332 344444 1 12112222222222 222334444 67778999988766544222
Q ss_pred EEEecCCCCCCCCCcccccCCCCCCCCCCCCcHHHHHHhhcc
Q 004363 279 HWAYGGDFGDTPNDLNFCLNGLLWPDRTPHPALHEVKYVYQA 320 (759)
Q Consensus 279 ~~~ygg~f~~~~~d~~f~~~Glv~~dr~pkp~~~~~k~~~qp 320 (759)
+.|+| ..| =+++.+.+|||+++.++.+-.|
T Consensus 314 -~~~~~---~rP--------l~~D~n~~pKPa~~aI~e~la~ 343 (345)
T COG3693 314 -PRRDG---LRP--------LLFDDNYQPKPAYKAIAEVLAP 343 (345)
T ss_pred -cCcCC---CCC--------cccCCCCCcchHHHHHHHHhcC
Confidence 12222 122 2567778999999999866544
No 44
>TIGR02635 RhaI_grampos L-rhamnose isomerase, Streptomyces subtype. This clade of sequences is closely related to the L-rhamnose isomerases found in Pseudomonas stutzeri and in a number of the Rhizobiales (TIGR02629). The genes of the family represented here are found in similar genomic contexts which contain genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (TIGR02632), sugar kinases, and sugar transporters.
Probab=72.67 E-value=59 Score=36.38 Aligned_cols=106 Identities=15% Similarity=0.176 Sum_probs=63.7
Q ss_pred EeeecCCCCCCCCCCCCHHHHHHHHHHHHHc-CCCEEEcC-CCC-----ChhHHHHHHHhcCCEEEe-eccccccCcccc
Q 004363 56 RGVNRHEHHPRVGKTNIESCMVKDLVLMKQN-NINAVRNS-HYP-----QHPRWYELCDLFGLYMID-EANIETHGFYFS 127 (759)
Q Consensus 56 rGvn~h~~~p~~g~~~~~e~~~~dl~~mK~~-g~N~vR~~-h~p-----~~~~~~dlcDe~Gi~V~~-E~~~~~~g~~~~ 127 (759)
++..|...++.-|.+-+.+.+..|+..++.+ ++. -++. |.| .-.++-++++++||-|-. ...+-+|.....
T Consensus 22 ~~~tRf~~f~~~g~~r~~~e~~~d~~~v~~L~~~~-~~v~lH~~~d~~~d~~~~~~~l~~~GL~v~~i~p~~f~~~~~~~ 100 (378)
T TIGR02635 22 NSGTRFKVFHQEGAARNVFEKIEDAALVHRLTGIC-PTVALHIPWDRVEDYEELARYAEELGLKIGAINPNLFQDDDYKF 100 (378)
T ss_pred CCCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCC-CceeeccCCccccCHHHHHHHHHHcCCceeeeeCCccCCcccCC
Confidence 3444444455667777899999999988877 444 2221 444 235789999999998874 332222221111
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHH--HhcCCCceEEEEe
Q 004363 128 EHLKHPTMEPSWAAAMMDRVIGMV--ERDKNHASIICWS 164 (759)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~mV--~r~rNHPSIi~Ws 164 (759)
+... ..++.-++...+.+++.+ -+--+-|+|.+|.
T Consensus 101 GSLt--~pD~~vR~~AIe~~k~~idiA~eLGa~~I~iW~ 137 (378)
T TIGR02635 101 GSLT--HPDKRIRRKAIDHLLECVDIAKKTGSKDISLWL 137 (378)
T ss_pred CCCC--CCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEec
Confidence 1122 346776666666665555 3344677999993
No 45
>smart00769 WHy Water Stress and Hypersensitive response.
Probab=72.14 E-value=12 Score=33.22 Aligned_cols=50 Identities=18% Similarity=0.217 Sum_probs=39.2
Q ss_pred EEEEEeccCCCCCCCeEEEEEEEeCCeEEEEEEee-CCcCCCCCEEEEEecC
Q 004363 329 TLKISNTNFFETTQGLEFSWVAHGDGYKLGFGILS-LPLIKPHSNYEIELKS 379 (759)
Q Consensus 329 ~i~v~N~~~f~~l~~~~~~w~l~~dg~~v~~g~~~-~~~v~p~~~~~i~lp~ 379 (759)
.+.|.|-+.| +|.--.+.+.+..+|..+.+|+.. ...|+|.++..+++|.
T Consensus 20 ~l~v~NPN~~-~l~~~~~~y~l~~~g~~v~~g~~~~~~~ipa~~~~~v~v~~ 70 (100)
T smart00769 20 KVKVQNPNPF-PIPVNGLSYDLYLNGVELGSGEIPDSGTLPGNGRTVLDVPV 70 (100)
T ss_pred EEEEECCCCC-ccccccEEEEEEECCEEEEEEEcCCCcEECCCCcEEEEEEE
Confidence 5789999865 444345777888899999999984 4689999998887763
No 46
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=71.34 E-value=63 Score=35.65 Aligned_cols=113 Identities=13% Similarity=0.145 Sum_probs=71.0
Q ss_pred HHHHHHHHHcCCCEEEc---CC-----CCC----------------hhHHHHHHHhcCCEEEeeccccccCcccccCCCC
Q 004363 77 VKDLVLMKQNNINAVRN---SH-----YPQ----------------HPRWYELCDLFGLYMIDEANIETHGFYFSEHLKH 132 (759)
Q Consensus 77 ~~dl~~mK~~g~N~vR~---~h-----~p~----------------~~~~~dlcDe~Gi~V~~E~~~~~~g~~~~~~~~~ 132 (759)
.+-++++|++|+..+=+ || +|. -.+|.++|.++||-+..=.... .+. ......
T Consensus 94 dqW~~~ak~aGakY~VlTakHHDGF~LW~S~~t~~~v~~~~~krDiv~El~~A~rk~Glk~G~Y~S~~--dw~-~~~~~~ 170 (346)
T PF01120_consen 94 DQWAKLAKDAGAKYVVLTAKHHDGFCLWPSKYTDYNVVNSGPKRDIVGELADACRKYGLKFGLYYSPW--DWH-HPDYPP 170 (346)
T ss_dssp HHHHHHHHHTT-SEEEEEEE-TT--BSS--TT-SSBGGGGGGTS-HHHHHHHHHHHTT-EEEEEEESS--SCC-CTTTTS
T ss_pred HHHHHHHHHcCCCEEEeehhhcCccccCCCCCCcccccCCCCCCCHHHHHHHHHHHcCCeEEEEecch--Hhc-CcccCC
Confidence 45589999999999766 33 110 0269999999999987633211 000 000000
Q ss_pred CCC------------CHH-HHHHHHHHHHHHHHhcCCCceEEEEecCCCCCCC-ccHHHHHHHHHhcCCCCeEEec
Q 004363 133 PTM------------EPS-WAAAMMDRVIGMVERDKNHASIICWSLGNEAGHG-PNHSAAAGWIRGKDPSRLLHYE 194 (759)
Q Consensus 133 ~~~------------~~~-~~~~~~~~~~~mV~r~rNHPSIi~WslgNE~~~g-~~~~~~~~~ik~~DptR~v~~~ 194 (759)
... ... +.+.+..++++++.++ +|.++-+..+...... .....++++++++-|.-.|..-
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~ql~EL~~~Y--~~d~lWfDg~~~~~~~~~~~~~~~~~i~~~qp~~ii~~r 244 (346)
T PF01120_consen 171 DEEGDENGPADGPGNWQRYYNEYWLAQLRELLTRY--KPDILWFDGGWPDPDEDWDSAELYNWIRKLQPDVIINNR 244 (346)
T ss_dssp SCHCHHCC--HCCHHHHHHHHHHHHHHHHHHHHCS--TESEEEEESTTSCCCTHHHHHHHHHHHHHHSTTSEEECC
T ss_pred CccCCcccccccchhhHhHhhhhhHHHHHHHHhCC--CcceEEecCCCCccccccCHHHHHHHHHHhCCeEEEecc
Confidence 000 112 3346778999999999 9999988888775322 2357899999999997776543
No 47
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=71.10 E-value=11 Score=43.57 Aligned_cols=120 Identities=14% Similarity=0.110 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHH-HcCCCEEEcCCCCCh---------------------hHHHHHHHhcCCEEEeeccccccCcc-----
Q 004363 73 ESCMVKDLVLMK-QNNINAVRNSHYPQH---------------------PRWYELCDLFGLYMIDEANIETHGFY----- 125 (759)
Q Consensus 73 ~e~~~~dl~~mK-~~g~N~vR~~h~p~~---------------------~~~~dlcDe~Gi~V~~E~~~~~~g~~----- 125 (759)
++.++..|..++ ++||..||+|+--.+ +.++|..-+.||..+.|+.+.--+..
T Consensus 38 ~~~~q~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Ynf~~lD~i~D~l~~~g~~P~vel~f~p~~~~~~~~~ 117 (486)
T PF01229_consen 38 RADWQEQLRELQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYNFTYLDQILDFLLENGLKPFVELGFMPMALASGYQT 117 (486)
T ss_dssp BHHHHHHHHHHHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE--HHHHHHHHHHHHCT-EEEEEE-SB-GGGBSS--E
T ss_pred hHHHHHHHHHHHhccCceEEEEEeeccCchhhccccccCCCCcCChHHHHHHHHHHHHcCCEEEEEEEechhhhcCCCCc
Confidence 455666666665 999999999754421 25899999999999999954211110
Q ss_pred ---cccCCCCCCCCHHHHHHHHHHHHHHHHhcC-CCceEEEEecCCCCCCCc--------c----HHHHHHHHHhcCCCC
Q 004363 126 ---FSEHLKHPTMEPSWAAAMMDRVIGMVERDK-NHASIICWSLGNEAGHGP--------N----HSAAAGWIRGKDPSR 189 (759)
Q Consensus 126 ---~~~~~~~~~~~~~~~~~~~~~~~~mV~r~r-NHPSIi~WslgNE~~~g~--------~----~~~~~~~ik~~DptR 189 (759)
..+....|.+-..|.+-+.+-++..+.|+- +.=+-..|.+=||+.... . ++..++.||+.||+=
T Consensus 118 ~~~~~~~~~pp~~~~~W~~lv~~~~~h~~~RYG~~ev~~W~fEiWNEPd~~~f~~~~~~~ey~~ly~~~~~~iK~~~p~~ 197 (486)
T PF01229_consen 118 VFWYKGNISPPKDYEKWRDLVRAFARHYIDRYGIEEVSTWYFEIWNEPDLKDFWWDGTPEEYFELYDATARAIKAVDPEL 197 (486)
T ss_dssp ETTTTEE-S-BS-HHHHHHHHHHHHHHHHHHHHHHHHTTSEEEESS-TTSTTTSGGG-HHHHHHHHHHHHHHHHHH-TTS
T ss_pred cccccCCcCCcccHHHHHHHHHHHHHHHHhhcCCccccceeEEeCcCCCcccccCCCCHHHHHHHHHHHHHHHHHhCCCC
Confidence 001112344556787776666777777753 222334578889975421 1 356678899999986
Q ss_pred eEE
Q 004363 190 LLH 192 (759)
Q Consensus 190 ~v~ 192 (759)
.|-
T Consensus 198 ~vG 200 (486)
T PF01229_consen 198 KVG 200 (486)
T ss_dssp EEE
T ss_pred ccc
Confidence 654
No 48
>PF11797 DUF3324: Protein of unknown function C-terminal (DUF3324); InterPro: IPR021759 This family consists of several hypothetical bacterial proteins of unknown function.
Probab=68.01 E-value=81 Score=29.93 Aligned_cols=68 Identities=16% Similarity=0.088 Sum_probs=50.8
Q ss_pred EEEEEeccCCCCCCCeEEEEEEEeCC--eEEEEEEeeCCcCCCCCEEEEEecCCCCcccCCCCCCceEEEEEEEEe
Q 004363 329 TLKISNTNFFETTQGLEFSWVAHGDG--YKLGFGILSLPLIKPHSNYEIELKSSPWYSQWNSCSAEEIFLTVTAKL 402 (759)
Q Consensus 329 ~i~v~N~~~f~~l~~~~~~w~l~~dg--~~v~~g~~~~~~v~p~~~~~i~lp~~~~~~~~~~~~~~e~~l~i~~~l 402 (759)
.+.|.|.. =+=++++.+..+|...| +++.+.+.....++|.+.-.++||... +.-.+|+|.|.+.+.-
T Consensus 47 ~~~l~N~~-~~~l~~~~v~a~V~~~~~~k~~~~~~~~~~~mAPNS~f~~~i~~~~-----~~lk~G~Y~l~~~~~~ 116 (140)
T PF11797_consen 47 QANLQNPQ-PAILKKLTVDAKVTKKGSKKVLYTFKKENMQMAPNSNFNFPIPLGG-----KKLKPGKYTLKITAKS 116 (140)
T ss_pred EEEEECCC-chhhcCcEEEEEEEECCCCeEEEEeeccCCEECCCCeEEeEecCCC-----cCccCCEEEEEEEEEc
Confidence 36788885 35567889999998644 677777775568999999999998641 1234679999999983
No 49
>PF03168 LEA_2: Late embryogenesis abundant protein; InterPro: IPR004864 Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress [, ]. The function of these proteins is unknown. ; PDB: 3BUT_A 1XO8_A 1YYC_A.
Probab=66.00 E-value=12 Score=32.51 Aligned_cols=50 Identities=20% Similarity=0.147 Sum_probs=37.0
Q ss_pred EEEEEeccCCCCCCCeEEEEEEEeCCeEEE-EEEeeCCcCCCCCEEEEEecC
Q 004363 329 TLKISNTNFFETTQGLEFSWVAHGDGYKLG-FGILSLPLIKPHSNYEIELKS 379 (759)
Q Consensus 329 ~i~v~N~~~f~~l~~~~~~w~l~~dg~~v~-~g~~~~~~v~p~~~~~i~lp~ 379 (759)
+|.|.|-+. .++.-=.+.+.+.-+|..++ .+..+-..++|+++..+.++.
T Consensus 1 ~l~v~NPN~-~~i~~~~~~~~v~~~g~~v~~~~~~~~~~i~~~~~~~v~~~v 51 (101)
T PF03168_consen 1 TLSVRNPNS-FGIRYDSIEYDVYYNGQRVGTGGSLPPFTIPARSSTTVPVPV 51 (101)
T ss_dssp EEEEEESSS-S-EEEEEEEEEEEESSSEEEEEEECE-EEESSSCEEEEEEEE
T ss_pred CEEEECCCc-eeEEEeCEEEEEEECCEEEECccccCCeEECCCCcEEEEEEE
Confidence 478999987 66664577888988999988 444444478999988888763
No 50
>PF09284 RhgB_N: Rhamnogalacturonase B, N-terminal; InterPro: IPR015364 This domain is found in prokaryotic enzyme rhamnogalacturonase B, it adopts a structure consisting of a beta supersandwich, with eighteen strands in two beta-sheets. The exact function of the domain is unknown, but a putative role includes carbohydrate-binding []. ; GO: 0016837 carbon-oxygen lyase activity, acting on polysaccharides, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=65.32 E-value=15 Score=38.07 Aligned_cols=37 Identities=16% Similarity=0.263 Sum_probs=25.3
Q ss_pred EeeCCeEEEEccCcEEEEEEcCcccEEEEEECCEeee
Q 004363 443 ENLGNTIQLSHQNSWEIKFDIQTGAVESWKVEGVSVM 479 (759)
Q Consensus 443 ~~~~~~~~v~~~~~~~~~Fdk~tG~l~s~~~~g~~ll 479 (759)
.++++.+.|-.+.++.++.||.+|-|+|++|+|.||=
T Consensus 4 t~sg~~~viDtga~Lvf~V~~s~gDitSi~y~g~ElQ 40 (249)
T PF09284_consen 4 TDSGSNYVIDTGAGLVFKVSKSNGDITSIKYNGTELQ 40 (249)
T ss_dssp EE-SSEEEEE---TEEEEEETTT--EEEEEETTEE-B
T ss_pred EecCCcEEEECCCCEEEEEecCCCCeEEEEECCEeee
Confidence 4456677775566788999999999999999999984
No 51
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=54.90 E-value=83 Score=34.20 Aligned_cols=54 Identities=15% Similarity=0.209 Sum_probs=42.9
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEcC------------CCCC-------------h--hHHHHHHHhcCCEEEeecccccc
Q 004363 70 TNIESCMVKDLVLMKQNNINAVRNS------------HYPQ-------------H--PRWYELCDLFGLYMIDEANIETH 122 (759)
Q Consensus 70 ~~~~e~~~~dl~~mK~~g~N~vR~~------------h~p~-------------~--~~~~dlcDe~Gi~V~~E~~~~~~ 122 (759)
.++.+.+++-|+.|....+|.+-.| .+|. + .++.+.|.++||-|+.|+++..|
T Consensus 14 f~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~~~~yT~~di~elv~yA~~rgI~vIPEId~PGH 93 (311)
T cd06570 14 FIPVAVIKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASDGLYYTQEQIREVVAYARDRGIRVVPEIDVPGH 93 (311)
T ss_pred CcCHHHHHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCCCCccCHHHHHHHHHHHHHcCCEEEEeecCccc
Confidence 3578999999999999999987663 1221 1 25899999999999999987666
Q ss_pred C
Q 004363 123 G 123 (759)
Q Consensus 123 g 123 (759)
.
T Consensus 94 ~ 94 (311)
T cd06570 94 A 94 (311)
T ss_pred h
Confidence 4
No 52
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=50.87 E-value=82 Score=27.08 Aligned_cols=60 Identities=15% Similarity=0.283 Sum_probs=36.1
Q ss_pred EEEEEeccCCCCCCCeEEEEEEEeCCeEEEEEEeeCCcCCCCCEEEEEecCCCCcccCCCCCCceEEEEEEE
Q 004363 329 TLKISNTNFFETTQGLEFSWVAHGDGYKLGFGILSLPLIKPHSNYEIELKSSPWYSQWNSCSAEEIFLTVTA 400 (759)
Q Consensus 329 ~i~v~N~~~f~~l~~~~~~w~l~~dg~~v~~g~~~~~~v~p~~~~~i~lp~~~~~~~~~~~~~~e~~l~i~~ 400 (759)
.+.|.|.=. .+...+.+. +..+|..+.+ ..++.|+||++..+.+...+ . ..+.|.|.+.+
T Consensus 24 ~~~V~N~G~-~~~~~~~v~--~~~~~~~~~~--~~i~~L~~g~~~~v~~~~~~------~-~~G~~~i~~~i 83 (101)
T PF07705_consen 24 TVTVKNNGT-ADAENVTVR--LYLDGNSVST--VTIPSLAPGESETVTFTWTP------P-SPGSYTIRVVI 83 (101)
T ss_dssp EEEEEE-SS-S-BEEEEEE--EEETTEEEEE--EEESEB-TTEEEEEEEEEE-------S-S-CEEEEEEEE
T ss_pred EEEEEECCC-CCCCCEEEE--EEECCceecc--EEECCcCCCcEEEEEEEEEe------C-CCCeEEEEEEE
Confidence 467888732 334445554 5678887744 44468999999999987542 2 44677665554
No 53
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=49.52 E-value=1.3e+02 Score=31.74 Aligned_cols=88 Identities=7% Similarity=0.010 Sum_probs=54.5
Q ss_pred CHHHHHHHHHHHHHcCCCEEEcCCCCCh----h-----------HHHHHHHhcCCEEEeeccccccCcccccCCCCCCCC
Q 004363 72 IESCMVKDLVLMKQNNINAVRNSHYPQH----P-----------RWYELCDLFGLYMIDEANIETHGFYFSEHLKHPTME 136 (759)
Q Consensus 72 ~~e~~~~dl~~mK~~g~N~vR~~h~p~~----~-----------~~~dlcDe~Gi~V~~E~~~~~~g~~~~~~~~~~~~~ 136 (759)
..+.+++-+++++++|+..|+++..... + .+.++|.++||.+..|.- +.... .....
T Consensus 83 ~~~~~~~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~l~~l~~~a~~~gi~l~lEn~----~~~~~----~~~~t 154 (279)
T cd00019 83 SIERLKDEIERCEELGIRLLVFHPGSYLGQSKEEGLKRVIEALNELIDKAETKGVVIALETM----AGQGN----EIGSS 154 (279)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEeCC----CCCCC----CCCCC
Confidence 3566788899999999999998433221 1 255666788999888762 22100 00111
Q ss_pred HHHHHHHHHHHHHHHHhcCCCceE-EEEecCCCCCCCcc
Q 004363 137 PSWAAAMMDRVIGMVERDKNHASI-ICWSLGNEAGHGPN 174 (759)
Q Consensus 137 ~~~~~~~~~~~~~mV~r~rNHPSI-i~WslgNE~~~g~~ 174 (759)
.+.+.++++....||.+ +.|.++|=...|.+
T Consensus 155 -------~~~~~~li~~v~~~~~~g~~lD~~h~~~~g~~ 186 (279)
T cd00019 155 -------FEELKEIIDLIKEKPRVGVCIDTCHIFAAGYD 186 (279)
T ss_pred -------HHHHHHHHHhcCCCCCeEEEEEhhhHHhccCC
Confidence 13456666666568877 88888885544433
No 54
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=46.39 E-value=1.3e+02 Score=31.23 Aligned_cols=100 Identities=10% Similarity=0.139 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHcCCCEEEcCCCC--Ch---h-----------HHHHHHHhcCCEEEeecc--ccccCcccccCCCCCCC
Q 004363 74 SCMVKDLVLMKQNNINAVRNSHYP--QH---P-----------RWYELCDLFGLYMIDEAN--IETHGFYFSEHLKHPTM 135 (759)
Q Consensus 74 e~~~~dl~~mK~~g~N~vR~~h~p--~~---~-----------~~~dlcDe~Gi~V~~E~~--~~~~g~~~~~~~~~~~~ 135 (759)
+.+++-++.++++|+..||+.... .. + ++.++|.++||.+..|.- .+..++. ..
T Consensus 84 ~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~~~~~~~~~--------l~ 155 (254)
T TIGR03234 84 EGVALAIAYARALGCPQVNCLAGKRPAGVSPEEARATLVENLRYAADALDRIGLTLLIEPINSFDMPGFF--------LT 155 (254)
T ss_pred HHHHHHHHHHHHhCCCEEEECcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEECCcccCCCCh--------hc
Confidence 567778899999999999984321 11 1 356778999999988851 1100110 01
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCceE-EEEecCCCCCCCccHHHHHHHHHhcCCCCeEEe
Q 004363 136 EPSWAAAMMDRVIGMVERDKNHASI-ICWSLGNEAGHGPNHSAAAGWIRGKDPSRLLHY 193 (759)
Q Consensus 136 ~~~~~~~~~~~~~~mV~r~rNHPSI-i~WslgNE~~~g~~~~~~~~~ik~~DptR~v~~ 193 (759)
+ .+++.++++.. +||.+ +.|.++|=...+.+... .++.+- .|..++
T Consensus 156 t-------~~~~~~li~~v-~~~~~~i~~D~~h~~~~~e~~~~---~i~~~~-~~i~~v 202 (254)
T TIGR03234 156 T-------TEQALAVIDDV-GRENLKLQYDLYHMQRMGGDLAR---TLAAYA-AHIGHV 202 (254)
T ss_pred C-------HHHHHHHHHHh-CCCCEeEeeehhhhhhhCCCHHH---HHHHhh-ccEeEE
Confidence 1 24556777655 47777 88888886655554433 344332 365544
No 55
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=45.58 E-value=1.1e+02 Score=32.42 Aligned_cols=81 Identities=16% Similarity=0.140 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHcCCCEEEcCCCCC------h----------hHHHHHHHhcCCEEEeeccccccCcccccCCCCCCCCH
Q 004363 74 SCMVKDLVLMKQNNINAVRNSHYPQ------H----------PRWYELCDLFGLYMIDEANIETHGFYFSEHLKHPTMEP 137 (759)
Q Consensus 74 e~~~~dl~~mK~~g~N~vR~~h~p~------~----------~~~~dlcDe~Gi~V~~E~~~~~~g~~~~~~~~~~~~~~ 137 (759)
+.+++-|++++++|+..|+++.+.. . .++.++|.++|+.+..|. |.... ..++
T Consensus 99 ~~~~~~i~~a~~lG~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~GV~i~iE~----~~~~~-------~~~~ 167 (283)
T PRK13209 99 EIMRKAIQLAQDLGIRVIQLAGYDVYYEQANNETRRRFIDGLKESVELASRASVTLAFEI----MDTPF-------MNSI 167 (283)
T ss_pred HHHHHHHHHHHHcCCCEEEECCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEee----cCCcc-------cCCH
Confidence 4577888999999999999864431 1 136788888999999886 22110 1111
Q ss_pred HHHHHHHHHHHHHHHhcCCCceE-EEEecCCCCCCCc
Q 004363 138 SWAAAMMDRVIGMVERDKNHASI-ICWSLGNEAGHGP 173 (759)
Q Consensus 138 ~~~~~~~~~~~~mV~r~rNHPSI-i~WslgNE~~~g~ 173 (759)
+++.++++.. +||.+ ++|.++|=...+.
T Consensus 168 -------~~~~~ll~~v-~~~~lgl~~D~~h~~~~~~ 196 (283)
T PRK13209 168 -------SKALGYAHYL-NSPWFQLYPDIGNLSAWDN 196 (283)
T ss_pred -------HHHHHHHHHh-CCCccceEeccchHHHhcC
Confidence 2344555543 77888 7778887554443
No 56
>PF01263 Aldose_epim: Aldose 1-epimerase; InterPro: IPR008183 Aldose 1-epimerase (5.1.3.3 from EC) (mutarotase) is the enzyme responsible for the anomeric interconversion of D-glucose and other aldoses between their alpha- and beta-forms. The sequence of mutarotase from two bacteria, Acinetobacter calcoaceticus and Streptococcus thermophilus is available []. It has also been shown that, on the basis of extensive sequence similarities, a mutarotase domain seems to be present in the C-terminal half of the fungal GAL10 protein which encodes, in the N-terminal part, UDP-glucose 4-epimerase.; GO: 0016853 isomerase activity, 0005975 carbohydrate metabolic process; PDB: 1YGA_A 3DCD_A 2CIQ_A 2CIS_A 2CIR_A 2HTB_C 2HTA_B 3Q1N_A 1NSZ_B 1NSR_B ....
Probab=45.45 E-value=1.1e+02 Score=32.58 Aligned_cols=135 Identities=20% Similarity=0.330 Sum_probs=68.1
Q ss_pred EEEEccCcEEEEEEcCcccEEEEEECC--EeeeccCccc-ceeec--------CCCCCCCCC-----CChhhHHHHH---
Q 004363 449 IQLSHQNSWEIKFDIQTGAVESWKVEG--VSVMKRGIFP-CFWRA--------PTDNDKGGG-----ESSYYSRWRA--- 509 (759)
Q Consensus 449 ~~v~~~~~~~~~Fdk~tG~l~s~~~~g--~~ll~~~~~~-nfwRa--------ptDND~g~~-----~~~~~~~W~~--- 509 (759)
+++..++..++++...-|.|.|++..+ +++|..+... .+|+. |.-|=...+ ...+.-.|..
T Consensus 3 itL~n~~~~~~~i~~~Ga~l~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~p~~~Ri~~g~~~~~g~~~~l~~~~~~~ 82 (300)
T PF01263_consen 3 ITLENGNGLSAVIPEYGAELTSLQVKGNGREVLWQPDPADAYWSNSFGGPILFPWPNRIRNGRFTFDGKPYCLPWNGPYP 82 (300)
T ss_dssp EEEEETTSEEEEEETBTTEEEEEEETTTTEESB-B-STHHHHHHSTCTTCEECSCSSEEGGGEEEETTEEEEBSSSBTTT
T ss_pred EEEECCCceEEEEeccCcEEEEEEECCCCeEEecCCCChHHhcccccceeeeecccceEECCEEEECCEEEEeeeccCCC
Confidence 445443468889999999999999999 9998755432 33332 222211000 0000000111
Q ss_pred ---cCccceeeEEEEEEEEEeC-CceEEEEEEEecCCccccchhhhhhhccceEEEEEEEEEecCCeEEEEEEEeeCCCC
Q 004363 510 ---AGIDSLVFLTKSCSIQNVT-DYFVKIRVVYDGTPRVDMSSLTKLEKAKALFEIVIDYTIYGSGNVIVECNFKPNTSD 585 (759)
Q Consensus 510 ---~g~~~~~~~~~~~~~~~~~-~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~i~~~G~i~v~~~~~~~~~~ 585 (759)
-|+-+. ..+++.... +..+.++.......... -...+.++++|++..+|.+.|++.+.-. +
T Consensus 83 ~~~HG~~~~----~~w~v~~~~~~~~~~~~~~~~~~~~~~---------yP~~~~l~~~y~L~~~~~L~i~~~v~n~-~- 147 (300)
T PF01263_consen 83 NPIHGFARN----KPWEVEEQSEDDSVSFTLVSDPDGEEG---------YPFDFRLRITYTLDENGKLTITYEVTND-G- 147 (300)
T ss_dssp BEETBSGGG----SB-EEEEEEETTEEEEEEEEEETTHHH---------SSSEEEEEEEEEEETTEEEEEEEEEEES-S-
T ss_pred cCCCCCccc----ccEEEEEecccceEEEEEEecCcccee---------eccceeeEEEEEECCCCeEEEEEEEEec-C-
Confidence 111111 123333322 23455444431110000 0135889999999999889999999865 3
Q ss_pred CCCcc-eeEEEEEec
Q 004363 586 LPPLP-RVGVEFHLE 599 (759)
Q Consensus 586 ~p~lp-RiG~~~~lp 599 (759)
..+| -+|+.--++
T Consensus 148 -~~~p~~~g~HpyF~ 161 (300)
T PF01263_consen 148 -KPMPFNLGFHPYFN 161 (300)
T ss_dssp -SEEEEBEEEEEEEE
T ss_pred -ccEEeeccccceEE
Confidence 3333 555554444
No 57
>PRK09936 hypothetical protein; Provisional
Probab=45.26 E-value=1.5e+02 Score=31.78 Aligned_cols=123 Identities=9% Similarity=0.069 Sum_probs=78.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEc--CCCCCh---------hHHHHHHHhcCCEEEeeccccccCcccccCCCCCCCCH
Q 004363 69 KTNIESCMVKDLVLMKQNNINAVRN--SHYPQH---------PRWYELCDLFGLYMIDEANIETHGFYFSEHLKHPTMEP 137 (759)
Q Consensus 69 ~~~~~e~~~~dl~~mK~~g~N~vR~--~h~p~~---------~~~~dlcDe~Gi~V~~E~~~~~~g~~~~~~~~~~~~~~ 137 (759)
..++++++.+-++.+++.||+++=+ +.|-++ ...++.|.+.||-|+..++.. ..|...- ...++.-+
T Consensus 33 ~~~~~~qWq~~~~~~~~~G~~tLivQWt~yG~~~fg~~~g~La~~l~~A~~~Gl~v~vGL~~D-p~y~q~~-~~d~~~~~ 110 (296)
T PRK09936 33 SQVTDTQWQGLWSQLRLQGFDTLVVQWTRYGDADFGGQRGWLAKRLAAAQQAGLKLVVGLYAD-PEFFMHQ-KQDGAALE 110 (296)
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEEeeeccCCCcccchHHHHHHHHHHHHcCCEEEEcccCC-hHHHHHH-hcCchhHH
Confidence 4678999999999999999999877 333221 247899999999999988642 1111000 00111124
Q ss_pred HHHHHHHHHHHHHHHhcCCCceE--EEEecCCCCCC-Ccc--------HHHHHHHHHhcC-CCCeEEe
Q 004363 138 SWAAAMMDRVIGMVERDKNHASI--ICWSLGNEAGH-GPN--------HSAAAGWIRGKD-PSRLLHY 193 (759)
Q Consensus 138 ~~~~~~~~~~~~mV~r~rNHPSI--i~WslgNE~~~-g~~--------~~~~~~~ik~~D-ptR~v~~ 193 (759)
.|.+....+...+.+..++||.+ -.|=+-=|... .-. ...+...++.+| +.+||+.
T Consensus 111 ~yl~~~l~~~~~qa~~~~~~~~~~v~GWYiP~ElDd~~W~~~~rR~~L~~~L~~~~~~l~~~~kPv~I 178 (296)
T PRK09936 111 SYLNRQLGASLQQARLWSAAWGVPVDGWYLPAELDDLNWRDEARRQPLLTWLNAAQRLIDVSAKPVHI 178 (296)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCeEEeeeccchhcccCHHHHHHHHHHHHHHHHhCCCCCCCeEE
Confidence 45555556666788888888877 77888888752 211 123344455565 3567653
No 58
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=44.06 E-value=1.8e+02 Score=30.45 Aligned_cols=101 Identities=12% Similarity=0.048 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHcCCCEEEcCCCCC----h------------hHHHHHHHhcCCEEEeeccccccCcccccCCCCCCCC
Q 004363 73 ESCMVKDLVLMKQNNINAVRNSHYPQ----H------------PRWYELCDLFGLYMIDEANIETHGFYFSEHLKHPTME 136 (759)
Q Consensus 73 ~e~~~~dl~~mK~~g~N~vR~~h~p~----~------------~~~~dlcDe~Gi~V~~E~~~~~~g~~~~~~~~~~~~~ 136 (759)
.+.+++-+++++.+|+..|+++.... . .++.++|.++||.+..|. |+.... ....+
T Consensus 89 ~~~~~~~i~~a~~lGa~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~iE~----~~~~~~----~~~~t 160 (275)
T PRK09856 89 LDMIKLAMDMAKEMNAGYTLISAAHAGYLTPPNVIWGRLAENLSELCEYAENIGMDLILEP----LTPYES----NVVCN 160 (275)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEec----CCCCcc----cccCC
Confidence 35677788999999999999954211 1 247899999999998885 221100 00111
Q ss_pred HHHHHHHHHHHHHHHHhcCCCceE-EEEecCCCCCCCccHHHHHHHHHhcCCCCeEEe
Q 004363 137 PSWAAAMMDRVIGMVERDKNHASI-ICWSLGNEAGHGPNHSAAAGWIRGKDPSRLLHY 193 (759)
Q Consensus 137 ~~~~~~~~~~~~~mV~r~rNHPSI-i~WslgNE~~~g~~~~~~~~~ik~~DptR~v~~ 193 (759)
.+.+.++++.. +||.| +.+.++|-...+.+ +.+.++.+ +.|..+.
T Consensus 161 -------~~~~~~l~~~~-~~~~v~~~~D~~h~~~~~~~---~~~~i~~~-~~rI~~v 206 (275)
T PRK09856 161 -------ANDVLHALALV-PSPRLFSMVDICAPYVQAEP---VMSYFDKL-GDKLRHL 206 (275)
T ss_pred -------HHHHHHHHHHc-CCCcceeEEeecchhcCCCC---HHHHHHHh-CCcEEEE
Confidence 13455666644 67777 55678775444433 44455554 3565544
No 59
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=43.99 E-value=1.8e+02 Score=30.65 Aligned_cols=98 Identities=12% Similarity=0.091 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHcCCCEEEcCCCC---C-h-h-----------HHHHHHHhcCCEEEeeccccccCcccccCCCCCCCC
Q 004363 73 ESCMVKDLVLMKQNNINAVRNSHYP---Q-H-P-----------RWYELCDLFGLYMIDEANIETHGFYFSEHLKHPTME 136 (759)
Q Consensus 73 ~e~~~~dl~~mK~~g~N~vR~~h~p---~-~-~-----------~~~dlcDe~Gi~V~~E~~~~~~g~~~~~~~~~~~~~ 136 (759)
.+.+++-+++++++|++.|+++.+. . . + ++.++|.++|+.+..|. |...
T Consensus 93 ~~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~----~~~~----------- 157 (279)
T TIGR00542 93 LEIMEKAIQLARDLGIRTIQLAGYDVYYEEHDEETRRRFREGLKEAVELAARAQVTLAVEI----MDTP----------- 157 (279)
T ss_pred HHHHHHHHHHHHHhCCCEEEecCcccccCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEEee----CCCc-----------
Confidence 3457888999999999999996531 1 1 1 36788999999999885 2111
Q ss_pred HHHHHHHHHHHHHHHHhcCCCceE-EEEecCCCCCCCccHHHHHHHHHhcCCCCeEEe
Q 004363 137 PSWAAAMMDRVIGMVERDKNHASI-ICWSLGNEAGHGPNHSAAAGWIRGKDPSRLLHY 193 (759)
Q Consensus 137 ~~~~~~~~~~~~~mV~r~rNHPSI-i~WslgNE~~~g~~~~~~~~~ik~~DptR~v~~ 193 (759)
+... .+++.++++.. +||.| +.|.++|=...+.+. .+.++.. ..|.++.
T Consensus 158 --~~~t-~~~~~~li~~v-~~~~v~~~~D~~h~~~~~~~~---~~~i~~~-~~~i~~v 207 (279)
T TIGR00542 158 --FMSS-ISKWLKWDHYL-NSPWFTLYPDIGNLSAWDNDV---QMELQLG-IDKIVAI 207 (279)
T ss_pred --hhcC-HHHHHHHHHHc-CCCceEEEeCcChhhhccCCH---HHHHHHh-hhhEEEE
Confidence 1111 12345566554 67877 668888855445443 2334433 2465554
No 60
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=39.81 E-value=1.8e+02 Score=27.40 Aligned_cols=42 Identities=21% Similarity=0.371 Sum_probs=30.0
Q ss_pred HHHHHHHHcCCCEEEc---CC-----CCC-----h--------hHHHHHHHhcCCEEEeeccc
Q 004363 78 KDLVLMKQNNINAVRN---SH-----YPQ-----H--------PRWYELCDLFGLYMIDEANI 119 (759)
Q Consensus 78 ~dl~~mK~~g~N~vR~---~h-----~p~-----~--------~~~~dlcDe~Gi~V~~E~~~ 119 (759)
+-++.+|++++|+|-+ +| ||- + .++.++|-+.||-|+.=+.+
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~~Girv~ay~~~ 66 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHERGIRVPAYFDF 66 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCCcCHHHHHHHHHHHCCCEEEEEEee
Confidence 4578889999999887 32 332 1 26889999999998765543
No 61
>PLN02361 alpha-amylase
Probab=39.55 E-value=89 Score=35.29 Aligned_cols=68 Identities=9% Similarity=0.177 Sum_probs=50.6
Q ss_pred EECCEEEEEEeeecCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEcC---------CCCCh---------------hHH
Q 004363 47 LVNGNPVVIRGVNRHEHHPRVGKTNIESCMVKDLVLMKQNNINAVRNS---------HYPQH---------------PRW 102 (759)
Q Consensus 47 ~lNGk~i~lrGvn~h~~~p~~g~~~~~e~~~~dl~~mK~~g~N~vR~~---------h~p~~---------------~~~ 102 (759)
.-+|..+.|.|.+|... . + .--..+...+..+|++|+++|=+. .|.+. ..+
T Consensus 7 ~~~~~~v~lQ~F~W~~~--~-~--~~w~~i~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~l 81 (401)
T PLN02361 7 IRNGREILLQAFNWESH--K-H--DWWRNLEGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSL 81 (401)
T ss_pred hcCCCcEEEEEEeccCC--c-c--HHHHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHH
Confidence 45689999999998532 1 1 124678888999999999999762 12221 148
Q ss_pred HHHHHhcCCEEEeeccc
Q 004363 103 YELCDLFGLYMIDEANI 119 (759)
Q Consensus 103 ~dlcDe~Gi~V~~E~~~ 119 (759)
.+.|.+.||.|+.++.+
T Consensus 82 i~~~h~~gi~vi~D~V~ 98 (401)
T PLN02361 82 LRKMKQYNVRAMADIVI 98 (401)
T ss_pred HHHHHHcCCEEEEEEcc
Confidence 89999999999999865
No 62
>PF00703 Glyco_hydro_2: Glycosyl hydrolases family 2; InterPro: IPR006102 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities: beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This entry describes the immunoglobulin-like beta-sandwich domain [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3FN9_C 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3GM8_A 3HN3_E 1BHG_A 2VZU_A 2X09_A ....
Probab=38.94 E-value=22 Score=31.16 Aligned_cols=17 Identities=29% Similarity=0.470 Sum_probs=14.5
Q ss_pred eCCCCeEEEEEEEEeeE
Q 004363 21 HASGPVVDCESCLVGIR 37 (759)
Q Consensus 21 ~~~g~~~d~~~~~~GfR 37 (759)
..+|+++|+.+.+||||
T Consensus 94 ~~~g~~~d~~~~~~GfR 110 (110)
T PF00703_consen 94 DDDGEVLDSIETRFGFR 110 (110)
T ss_dssp EETTEEEEEEEEEEEB-
T ss_pred EeCCEEEEEEEeEeeEC
Confidence 46888999999999999
No 63
>cd09024 Aldose_epim_lacX Aldose 1-epimerase, similar to Lactococcus lactis lacX. Proteins similar to Lactococcus lactis lacX are uncharacterized members of aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=35.73 E-value=3.4e+02 Score=28.84 Aligned_cols=27 Identities=11% Similarity=0.101 Sum_probs=21.2
Q ss_pred CcEEEEEEcCcccEEEEEEC--CEeeecc
Q 004363 455 NSWEIKFDIQTGAVESWKVE--GVSVMKR 481 (759)
Q Consensus 455 ~~~~~~Fdk~tG~l~s~~~~--g~~ll~~ 481 (759)
++.++++...-|.|.|++.. |+++|..
T Consensus 6 ~~~~a~v~~~Ga~l~s~~~~~~g~e~l~~ 34 (288)
T cd09024 6 EFLTVTISEHGAELTSIKDKKTGREYLWQ 34 (288)
T ss_pred CcEEEEEeccCcEEEEEEeCCCCCEEEeC
Confidence 44677777778899999998 9999843
No 64
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=35.65 E-value=83 Score=33.10 Aligned_cols=48 Identities=21% Similarity=0.237 Sum_probs=39.8
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEcCCCCCh--------------hHHHHHHHhcCCEEEeecc
Q 004363 71 NIESCMVKDLVLMKQNNINAVRNSHYPQH--------------PRWYELCDLFGLYMIDEAN 118 (759)
Q Consensus 71 ~~~e~~~~dl~~mK~~g~N~vR~~h~p~~--------------~~~~dlcDe~Gi~V~~E~~ 118 (759)
-++|++..-.+.+|++|++.+|-+-|-|- +.+.+.|+++||.++.|.-
T Consensus 26 Es~e~~~~~a~~~~~~g~~~~r~g~~kpRts~~sf~G~G~~gl~~L~~~~~~~Gl~~~Tev~ 87 (250)
T PRK13397 26 ESYDHIRLAASSAKKLGYNYFRGGAYKPRTSAASFQGLGLQGIRYLHEVCQEFGLLSVSEIM 87 (250)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecccCCCCCCcccCCCCHHHHHHHHHHHHHcCCCEEEeeC
Confidence 47899999999999999999998554431 3589999999999999873
No 65
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=35.52 E-value=1.2e+02 Score=32.08 Aligned_cols=61 Identities=18% Similarity=0.136 Sum_probs=46.7
Q ss_pred CCEEEEEEeeecCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEcCCCCCh--------------hHHHHHHHhcCCEEE
Q 004363 49 NGNPVVIRGVNRHEHHPRVGKTNIESCMVKDLVLMKQNNINAVRNSHYPQH--------------PRWYELCDLFGLYMI 114 (759)
Q Consensus 49 NGk~i~lrGvn~h~~~p~~g~~~~~e~~~~dl~~mK~~g~N~vR~~h~p~~--------------~~~~dlcDe~Gi~V~ 114 (759)
|+..+.+-|-|-. -+.|+++.-.+..|++|.+++|-.-|-+. ...-+.||++|+.|+
T Consensus 43 ~~~~~viAGPCsv---------Es~E~i~~~A~~vk~~Ga~~lRGgafKPRTSPYsFQGlge~gL~~l~~a~~~~Gl~vv 113 (286)
T COG2876 43 GRALRVIAGPCSV---------ESEEQVRETAESVKAAGAKALRGGAFKPRTSPYSFQGLGEEGLKLLKRAADETGLPVV 113 (286)
T ss_pred CcceEEEecCccc---------CCHHHHHHHHHHHHHcchhhccCCcCCCCCCcccccccCHHHHHHHHHHHHHcCCeeE
Confidence 3346777777653 36899999999999999999998544331 136678999999999
Q ss_pred eecc
Q 004363 115 DEAN 118 (759)
Q Consensus 115 ~E~~ 118 (759)
.|+.
T Consensus 114 tEvm 117 (286)
T COG2876 114 TEVM 117 (286)
T ss_pred EEec
Confidence 9984
No 66
>COG5608 LEA14-like dessication related protein [Defense mechanisms]
Probab=35.32 E-value=65 Score=31.00 Aligned_cols=71 Identities=24% Similarity=0.341 Sum_probs=46.5
Q ss_pred CCCcHHHHHHhhcceEEe--eeccEEEEEeccCC-CCCCCeEEEEEEEeCCeEEEEEEeeC-CcCCCCCEEEEEecC
Q 004363 307 PHPALHEVKYVYQAIKVS--LKKGTLKISNTNFF-ETTQGLEFSWVAHGDGYKLGFGILSL-PLIKPHSNYEIELKS 379 (759)
Q Consensus 307 pkp~~~~~k~~~qpi~~~--~~~~~i~v~N~~~f-~~l~~~~~~w~l~~dg~~v~~g~~~~-~~v~p~~~~~i~lp~ 379 (759)
++|+...+|.-+--+.-+ .-=++++|.|-+.| ..+.+ +.+.++.||..++.|+..- -.|+|.+..++.++.
T Consensus 31 ~~p~ve~~ka~wGkvt~s~~EiV~t~KiyNPN~fPipVtg--l~y~vymN~Iki~eG~~~k~~~v~p~S~~tvdv~l 105 (161)
T COG5608 31 KKPGVESMKAKWGKVTNSETEIVGTLKIYNPNPFPIPVTG--LQYAVYMNDIKIGEGEILKGTTVPPNSRETVDVPL 105 (161)
T ss_pred CCCCceEEEEEEEEEeccceEEEEEEEecCCCCcceeeec--eEEEEEEcceEeeccccccceEECCCCeEEEEEEE
Confidence 456665555333322221 11257899999988 44444 4578889998899998743 368898888888763
No 67
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=34.67 E-value=5.4e+02 Score=28.85 Aligned_cols=111 Identities=14% Similarity=0.129 Sum_probs=66.6
Q ss_pred HHHHHHHHHcCCCEEEc---CC-----CCC----------------hhHHHHHHHhcCCEEEeeccc-ccc--Cccc-cc
Q 004363 77 VKDLVLMKQNNINAVRN---SH-----YPQ----------------HPRWYELCDLFGLYMIDEANI-ETH--GFYF-SE 128 (759)
Q Consensus 77 ~~dl~~mK~~g~N~vR~---~h-----~p~----------------~~~~~dlcDe~Gi~V~~E~~~-~~~--g~~~-~~ 128 (759)
++-++++|++|+..|=+ || ++. -.++.++|.+.||-+-.-... .-| .+.. ..
T Consensus 84 ~~Wa~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~~~pkrDiv~el~~A~rk~Glk~G~Y~S~~DW~~p~y~~~~~ 163 (384)
T smart00812 84 EEWADLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGPKRDLVGELADAVRKRGLKFGLYHSLFDWFNPLYAGPTS 163 (384)
T ss_pred HHHHHHHHHcCCCeEEeeeeecCCccccCCCCCCCcccCCCCCcchHHHHHHHHHHcCCeEEEEcCHHHhCCCccccccc
Confidence 44589999999999766 33 111 026999999999998664321 111 0100 00
Q ss_pred CCCCCCCCHHHHHHH---HHHHHHHHHhcCCCceEEEEecCCCCCCC-ccHHHHHHHHHhcCCCC
Q 004363 129 HLKHPTMEPSWAAAM---MDRVIGMVERDKNHASIICWSLGNEAGHG-PNHSAAAGWIRGKDPSR 189 (759)
Q Consensus 129 ~~~~~~~~~~~~~~~---~~~~~~mV~r~rNHPSIi~WslgNE~~~g-~~~~~~~~~ik~~DptR 189 (759)
....+.+.+.+.+.+ ..++++++.++. |.++-+..+.+.... ....+++++++++-|..
T Consensus 164 ~~~~~~~~~~~~~y~~~~~~Ql~ELit~Yg--pd~lWfD~~~~~~~~~~~~~~l~~~~~~~qP~~ 226 (384)
T smart00812 164 SDEDPDNWPRFQEFVDDWLPQLRELVTRYK--PDLLWFDGGWEAPDDYWRSKEFLAWLYNLSPVK 226 (384)
T ss_pred cccccccchhHHHHHHHHHHHHHHHHhcCC--CceEEEeCCCCCccchhcHHHHHHHHHHhCCCC
Confidence 000112233444444 889999999875 666555555443221 24678999999999877
No 68
>cd09019 galactose_mutarotase_like galactose mutarotase_like. Galactose mutarotase catalyzes the conversion of beta-D-galactose to alpha-D-galactose. Beta-D-galactose is produced by the degradation of lactose, a disaccharide composed of beta-D-glucose and beta-D-galactose. This epimerization reaction is the first step in the four-step Leloir pathway, which converts galactose into metabolically important glucose. This epimerization step is followed by the phosophorylation of alpha-D-galactose by galactokinase, an enzyme which can only act on the alpha anomer. A glutamate and a histidine residue of the galactose mutarotase have been shown to be critical for catalysis, the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. Galactose mutarotase is a member of the aldose-1-epimerase superfamily.
Probab=34.66 E-value=3.4e+02 Score=29.44 Aligned_cols=29 Identities=14% Similarity=0.373 Sum_probs=23.6
Q ss_pred eEEEEEEEEEecCCeEEEEEEEeeCCCCCC
Q 004363 558 LFEIVIDYTIYGSGNVIVECNFKPNTSDLP 587 (759)
Q Consensus 558 ~~~~~~~Y~i~~~G~i~v~~~~~~~~~~~p 587 (759)
.+.++++|++.+++.|.|++++... ...|
T Consensus 125 ~~~~~v~y~L~~~~~L~i~~~~~~~-~~~p 153 (326)
T cd09019 125 NLTVTVTYTLTDDNELTIEYEATTD-KPTP 153 (326)
T ss_pred EEEEEEEEEECCCCEEEEEEEEEeC-CCeE
Confidence 5788999999988899999999864 4444
No 69
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=33.59 E-value=1.6e+02 Score=33.75 Aligned_cols=80 Identities=11% Similarity=-0.015 Sum_probs=55.7
Q ss_pred EEEeeEEEEEeCC-EE--------------------EECCEEEE--EEeeecCCCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 004363 32 CLVGIRQVSKAPK-QL--------------------LVNGNPVV--IRGVNRHEHHPRVGKTNIESCMVKDLVLMKQNNI 88 (759)
Q Consensus 32 ~~~GfR~ie~~~~-~~--------------------~lNGk~i~--lrGvn~h~~~p~~g~~~~~e~~~~dl~~mK~~g~ 88 (759)
.+.||+.||+-++ .| .+.+.++. +||.|..++ ...+.+.++.|++.+.++|+
T Consensus 36 d~~Gv~~IE~~ggatf~~~~~f~~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~-----~~~pddvv~~~v~~A~~~Gv 110 (448)
T PRK12331 36 DNAGYHSLEMWGGATFDACLRFLNEDPWERLRKIRKAVKKTKLQMLLRGQNLLGY-----RNYADDVVESFVQKSVENGI 110 (448)
T ss_pred HHcCCCEEEecCCccchhhhccCCCCHHHHHHHHHHhCCCCEEEEEecccccccc-----ccCchhhHHHHHHHHHHCCC
Confidence 3569999999543 11 12345554 778775332 23456788999999999999
Q ss_pred CEEEcCCCC----ChhHHHHHHHhcCCEEEee
Q 004363 89 NAVRNSHYP----QHPRWYELCDLFGLYMIDE 116 (759)
Q Consensus 89 N~vR~~h~p----~~~~~~dlcDe~Gi~V~~E 116 (759)
..||+.... +-....+++.+.|+.|..-
T Consensus 111 d~irif~~lnd~~n~~~~v~~ak~~G~~v~~~ 142 (448)
T PRK12331 111 DIIRIFDALNDVRNLETAVKATKKAGGHAQVA 142 (448)
T ss_pred CEEEEEEecCcHHHHHHHHHHHHHcCCeEEEE
Confidence 999995433 3446889999999887543
No 70
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=32.55 E-value=49 Score=34.83 Aligned_cols=46 Identities=17% Similarity=0.200 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHcCCCEEEcCC----------CCCh---------------hHHHHHHHhcCCEEEeeccc
Q 004363 74 SCMVKDLVLMKQNNINAVRNSH----------YPQH---------------PRWYELCDLFGLYMIDEANI 119 (759)
Q Consensus 74 e~~~~dl~~mK~~g~N~vR~~h----------~p~~---------------~~~~dlcDe~Gi~V~~E~~~ 119 (759)
.-+...|..+|++|+|+|-++- |-.. .++.+.|.++||.|+.++.+
T Consensus 4 ~gi~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V~ 74 (316)
T PF00128_consen 4 RGIIDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVVP 74 (316)
T ss_dssp HHHHHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEET
T ss_pred HHHHHhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEeeec
Confidence 4567779999999999999831 1110 15889999999999999965
No 71
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=32.04 E-value=2.3e+02 Score=30.04 Aligned_cols=60 Identities=23% Similarity=0.294 Sum_probs=46.4
Q ss_pred CEEEEEEeeecCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEcCCC-----CC---------hhHHHHHHHhcCCEEEe
Q 004363 50 GNPVVIRGVNRHEHHPRVGKTNIESCMVKDLVLMKQNNINAVRNSHY-----PQ---------HPRWYELCDLFGLYMID 115 (759)
Q Consensus 50 Gk~i~lrGvn~h~~~p~~g~~~~~e~~~~dl~~mK~~g~N~vR~~h~-----p~---------~~~~~dlcDe~Gi~V~~ 115 (759)
|+.+.|-|-|-.+ +.+++..-.+.+|++|+..+|.+.+ |. -..+.++|.++||.+..
T Consensus 26 ~~~~~iaGPCsie---------~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~~~Gl~~~t 96 (266)
T PRK13398 26 EEKIIIAGPCAVE---------SEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGDKYNLPVVT 96 (266)
T ss_pred CCEEEEEeCCcCC---------CHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCCcHHHHHHHHHHHHHHcCCCEEE
Confidence 4456777877532 5888999999999999999999633 11 12578999999999999
Q ss_pred ecc
Q 004363 116 EAN 118 (759)
Q Consensus 116 E~~ 118 (759)
|.-
T Consensus 97 e~~ 99 (266)
T PRK13398 97 EVM 99 (266)
T ss_pred eeC
Confidence 873
No 72
>smart00642 Aamy Alpha-amylase domain.
Probab=31.94 E-value=1.1e+02 Score=29.98 Aligned_cols=48 Identities=17% Similarity=0.176 Sum_probs=36.0
Q ss_pred CHHHHHHHHHHHHHcCCCEEEcCC-------------CCC------h---------hHHHHHHHhcCCEEEeeccc
Q 004363 72 IESCMVKDLVLMKQNNINAVRNSH-------------YPQ------H---------PRWYELCDLFGLYMIDEANI 119 (759)
Q Consensus 72 ~~e~~~~dl~~mK~~g~N~vR~~h-------------~p~------~---------~~~~dlcDe~Gi~V~~E~~~ 119 (759)
+-+.+...|..+|++|+|+|-++- |.. + .++.+.|-+.||.|+.++.+
T Consensus 17 ~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~ 92 (166)
T smart00642 17 DLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVI 92 (166)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECC
Confidence 456777888899999999996621 110 1 24788889999999999864
No 73
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=31.89 E-value=3.5e+02 Score=28.26 Aligned_cols=98 Identities=11% Similarity=0.041 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHcCCCEEEcCCCC-----Ch-----------hHHHHHHHhcCCEEEeeccccccCcccccCCCCCCCC
Q 004363 73 ESCMVKDLVLMKQNNINAVRNSHYP-----QH-----------PRWYELCDLFGLYMIDEANIETHGFYFSEHLKHPTME 136 (759)
Q Consensus 73 ~e~~~~dl~~mK~~g~N~vR~~h~p-----~~-----------~~~~dlcDe~Gi~V~~E~~~~~~g~~~~~~~~~~~~~ 136 (759)
.+.+++-++.++.+|++.||+..+. .. .++.++|.++||.+..|. |+... ..+
T Consensus 93 ~~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~----~~~~~-------~~~ 161 (284)
T PRK13210 93 LEIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQVMLAVEI----MDTPF-------MNS 161 (284)
T ss_pred HHHHHHHHHHHHHhCCCEEEECCcccccccccHHHHHHHHHHHHHHHHHHHHhCCEEEEEe----cCccc-------cCC
Confidence 3556788999999999999985431 11 136778889999998776 32211 011
Q ss_pred HHHHHHHHHHHHHHHHhcCCCceE-EEEecCCCCCCCccHHHHHHHHHhcCCCCeEEe
Q 004363 137 PSWAAAMMDRVIGMVERDKNHASI-ICWSLGNEAGHGPNHSAAAGWIRGKDPSRLLHY 193 (759)
Q Consensus 137 ~~~~~~~~~~~~~mV~r~rNHPSI-i~WslgNE~~~g~~~~~~~~~ik~~DptR~v~~ 193 (759)
+ +.+.++++.. +||.| +.|..+|=...+.+ ..++++.+ ..|..+.
T Consensus 162 ~-------~~~~~l~~~v-~~~~~~~~~D~~h~~~~~~~---~~~~l~~~-~~~i~~v 207 (284)
T PRK13210 162 I-------SKWKKWDKEI-DSPWLTVYPDVGNLSAWGND---VWSELKLG-IDHIAAI 207 (284)
T ss_pred H-------HHHHHHHHHc-CCCceeEEecCChhhhcCCC---HHHHHHHh-cCeEEEE
Confidence 1 2234455544 67766 55678874433433 23344432 3454443
No 74
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=31.82 E-value=2.6e+02 Score=30.63 Aligned_cols=54 Identities=9% Similarity=0.065 Sum_probs=42.5
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEcCC------------C--------------------CCh--hHHHHHHHhcCCEEEe
Q 004363 70 TNIESCMVKDLVLMKQNNINAVRNSH------------Y--------------------PQH--PRWYELCDLFGLYMID 115 (759)
Q Consensus 70 ~~~~e~~~~dl~~mK~~g~N~vR~~h------------~--------------------p~~--~~~~dlcDe~Gi~V~~ 115 (759)
.++.+.+++-|+.|....+|.+-.|- + ... .++.+.|.+.||-|+.
T Consensus 14 f~~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~di~elv~yA~~rgI~vIP 93 (329)
T cd06568 14 FFTVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQEDYKDIVAYAAERHITVVP 93 (329)
T ss_pred CcCHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence 45899999999999999999976631 1 111 2588999999999999
Q ss_pred eccccccC
Q 004363 116 EANIETHG 123 (759)
Q Consensus 116 E~~~~~~g 123 (759)
|+++..|.
T Consensus 94 EiD~PGH~ 101 (329)
T cd06568 94 EIDMPGHT 101 (329)
T ss_pred ecCCcHHH
Confidence 99876664
No 75
>COG5014 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=31.07 E-value=1.4e+02 Score=29.40 Aligned_cols=67 Identities=21% Similarity=0.213 Sum_probs=43.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEEcCCCCCh---h---HHHHHHHhcCCEEEeeccccccCcccccCCCCCCCCHHHHHHHHH
Q 004363 72 IESCMVKDLVLMKQNNINAVRNSHYPQH---P---RWYELCDLFGLYMIDEANIETHGFYFSEHLKHPTMEPSWAAAMMD 145 (759)
Q Consensus 72 ~~e~~~~dl~~mK~~g~N~vR~~h~p~~---~---~~~dlcDe~Gi~V~~E~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 145 (759)
+.|..++-+++.|.+|+..||+|..-+- + +..|||-++-+. +||.|.... .|
T Consensus 76 P~eVaeRL~ei~K~~g~d~vRiSG~EP~l~~EHvlevIeLl~~~tFv------lETNG~~~g-------~d--------- 133 (228)
T COG5014 76 PEEVAERLLEISKKRGCDLVRISGAEPILGREHVLEVIELLVNNTFV------LETNGLMFG-------FD--------- 133 (228)
T ss_pred HHHHHHHHHHHHHhcCCcEEEeeCCCccccHHHHHHHHHhccCceEE------EEeCCeEEe-------cC---------
Confidence 4566678889999999999999886652 2 356666443322 234453321 11
Q ss_pred HHHHHHHhcCCCceEEE
Q 004363 146 RVIGMVERDKNHASIIC 162 (759)
Q Consensus 146 ~~~~mV~r~rNHPSIi~ 162 (759)
+.+|+.+-|||.|++
T Consensus 134 --rslv~el~nr~nv~v 148 (228)
T COG5014 134 --RSLVDELVNRLNVLV 148 (228)
T ss_pred --HHHHHHHhcCCceEE
Confidence 456777889888764
No 76
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=30.78 E-value=84 Score=33.93 Aligned_cols=55 Identities=15% Similarity=0.228 Sum_probs=43.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEcCC------------CCC-------------------h--hHHHHHHHhcCCEEEe
Q 004363 69 KTNIESCMVKDLVLMKQNNINAVRNSH------------YPQ-------------------H--PRWYELCDLFGLYMID 115 (759)
Q Consensus 69 ~~~~~e~~~~dl~~mK~~g~N~vR~~h------------~p~-------------------~--~~~~dlcDe~Gi~V~~ 115 (759)
+.++.+.+++-|+.|...++|.+-.|- +|. + .++.+.|.++||-|+.
T Consensus 11 ~~~~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~di~elv~yA~~rgI~viP 90 (303)
T cd02742 11 HFLSVESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTYAQLKDIIEYAAARGIEVIP 90 (303)
T ss_pred cCcCHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECHHHHHHHHHHHHHcCCEEEE
Confidence 346899999999999999999986631 121 1 2589999999999999
Q ss_pred eccccccC
Q 004363 116 EANIETHG 123 (759)
Q Consensus 116 E~~~~~~g 123 (759)
|+++..|.
T Consensus 91 EiD~PGH~ 98 (303)
T cd02742 91 EIDMPGHS 98 (303)
T ss_pred eccchHHH
Confidence 99876553
No 77
>PLN02784 alpha-amylase
Probab=30.65 E-value=1.8e+02 Score=36.06 Aligned_cols=69 Identities=12% Similarity=0.134 Sum_probs=50.3
Q ss_pred EECCEEEEEEeeecCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEcC---------CCCCh---------------hHH
Q 004363 47 LVNGNPVVIRGVNRHEHHPRVGKTNIESCMVKDLVLMKQNNINAVRNS---------HYPQH---------------PRW 102 (759)
Q Consensus 47 ~lNGk~i~lrGvn~h~~~p~~g~~~~~e~~~~dl~~mK~~g~N~vR~~---------h~p~~---------------~~~ 102 (759)
.-+|..+++.|.+|.- |.-|.- ...+...+..++++|+|+|=+. .|.+. ..+
T Consensus 498 ~~~~~eVmlQgF~Wds--~~dg~w--~~~I~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~L 573 (894)
T PLN02784 498 TGSGFEILCQGFNWES--HKSGRW--YMELGEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDL 573 (894)
T ss_pred ccCCceEEEEeEEcCc--CCCCch--HHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHH
Confidence 4578899999999842 222321 4567888999999999999762 12211 148
Q ss_pred HHHHHhcCCEEEeeccc
Q 004363 103 YELCDLFGLYMIDEANI 119 (759)
Q Consensus 103 ~dlcDe~Gi~V~~E~~~ 119 (759)
.+.|-+.||.|+.++-+
T Consensus 574 I~a~H~~GIkVIlDiVi 590 (894)
T PLN02784 574 VKSFHEVGIKVLGDAVL 590 (894)
T ss_pred HHHHHHCCCEEEEEECc
Confidence 89999999999999864
No 78
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=30.24 E-value=1.2e+02 Score=32.86 Aligned_cols=55 Identities=16% Similarity=0.088 Sum_probs=43.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEcC--C------CCC----------h--hHHHHHHHhcCCEEEeecccccc
Q 004363 68 GKTNIESCMVKDLVLMKQNNINAVRNS--H------YPQ----------H--PRWYELCDLFGLYMIDEANIETH 122 (759)
Q Consensus 68 g~~~~~e~~~~dl~~mK~~g~N~vR~~--h------~p~----------~--~~~~dlcDe~Gi~V~~E~~~~~~ 122 (759)
|..++.+.+.+-|+.|...++|.+=.+ + +|. + .++.+.|.++||-|+.|+....|
T Consensus 11 ~~~~~~~~lk~~id~ma~~k~N~l~lhl~D~f~~~~~p~~~~~~~~yT~~ei~ei~~yA~~~gI~vIPeid~pGH 85 (301)
T cd06565 11 NAVPKVSYLKKLLRLLALLGANGLLLYYEDTFPYEGEPEVGRMRGAYTKEEIREIDDYAAELGIEVIPLIQTLGH 85 (301)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEEEecceecCCCcccccCCCCcCHHHHHHHHHHHHHcCCEEEecCCCHHH
Confidence 456788999999999999999998762 1 111 1 15889999999999999986544
No 79
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=29.84 E-value=2.2e+02 Score=26.52 Aligned_cols=64 Identities=13% Similarity=0.047 Sum_probs=44.7
Q ss_pred EEEEEeccCCCCCCCeEEEEEEEeCCeEEEEEEeeCCcCCCCCEEEEEecCCCCcccCCCCCCceEEEEEE
Q 004363 329 TLKISNTNFFETTQGLEFSWVAHGDGYKLGFGILSLPLIKPHSNYEIELKSSPWYSQWNSCSAEEIFLTVT 399 (759)
Q Consensus 329 ~i~v~N~~~f~~l~~~~~~w~l~~dg~~v~~g~~~~~~v~p~~~~~i~lp~~~~~~~~~~~~~~e~~l~i~ 399 (759)
.++|+|.= =.+-..+.+.-+|..+|+++.+++..+--|+-+++.+-.+=+.. .+.+++..|.++
T Consensus 54 pF~V~N~g-g~TAasV~V~geL~~~~~v~E~~e~tiDfl~g~e~~~G~~IF~~------dP~~g~L~irv~ 117 (122)
T TIGR02588 54 PFAIHNLG-GTTAAAVNIRGELRQAGAVVENAEVTIDYLASGSKENGTLIFRS------DPRNGQLRLRVA 117 (122)
T ss_pred EEEEEeCC-CcEEEEEEEEEEEccCCceeEEeeEEEEEcCCCCeEeEEEEEcc------CcccCeEEEEEE
Confidence 47899985 46667789999999999999999887745777777766664331 234556555443
No 80
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=29.21 E-value=3e+02 Score=30.01 Aligned_cols=54 Identities=11% Similarity=0.082 Sum_probs=42.1
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEcC----------CCC------------------------------Ch--hHHHHHHH
Q 004363 70 TNIESCMVKDLVLMKQNNINAVRNS----------HYP------------------------------QH--PRWYELCD 107 (759)
Q Consensus 70 ~~~~e~~~~dl~~mK~~g~N~vR~~----------h~p------------------------------~~--~~~~dlcD 107 (759)
.++.+.+++-|+.|...++|.+=.| .+| .+ .++.+.|.
T Consensus 13 ~~~~~~ik~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT~~di~eiv~yA~ 92 (326)
T cd06564 13 YYSMDFLKDIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYTKEEFKELIAYAK 92 (326)
T ss_pred CCCHHHHHHHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCCCCCCCcccHHHHHHHHHHHH
Confidence 3578999999999999999998651 111 11 25899999
Q ss_pred hcCCEEEeeccccccC
Q 004363 108 LFGLYMIDEANIETHG 123 (759)
Q Consensus 108 e~Gi~V~~E~~~~~~g 123 (759)
++||-|+.|+++..|.
T Consensus 93 ~rgI~vIPEID~PGH~ 108 (326)
T cd06564 93 DRGVNIIPEIDSPGHS 108 (326)
T ss_pred HcCCeEeccCCCcHHH
Confidence 9999999999876653
No 81
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=29.15 E-value=97 Score=34.43 Aligned_cols=121 Identities=22% Similarity=0.348 Sum_probs=55.1
Q ss_pred HHHHHHHHhcCCCCeEEecCCCC---------CCCCcceeCC-CCCC---------hHHH---HHHHcCCCCCCcEEE--
Q 004363 176 SAAAGWIRGKDPSRLLHYEGGGS---------RTPSTDIVCP-MYMR---------VWDI---VMIAKDPTETRPLIL-- 231 (759)
Q Consensus 176 ~~~~~~ik~~DptR~v~~~~~~~---------~~~~~Di~~~-~Y~~---------~~~~---~~~~~~~~~~kP~i~-- 231 (759)
..+.+.||+.||.+||+....+. .....|+++. .|+. ...+ ..+.......||+++
T Consensus 216 ~~~~~~ir~~~p~~~vt~n~~~~~~~~~d~~~~a~~~D~~~~d~Y~~~~~~~~~~~~~~~a~~~dl~R~~~~~kpf~v~E 295 (374)
T PF02449_consen 216 RWQADIIREYDPDHPVTTNFMGSWFNGIDYFKWAKYLDVVSWDSYPDGSFDFYDDDPYSLAFNHDLMRSLAKGKPFWVME 295 (374)
T ss_dssp HHHHHHHHHHSTT-EEE-EE-TT---SS-HHHHGGGSSSEEEEE-HHHHHTTTT--TTHHHHHHHHHHHHTTT--EEEEE
T ss_pred HHHHHHHHHhCCCceEEeCccccccCcCCHHHHHhhCCcceeccccCcccCCCCCCHHHHHHHHHHHHhhcCCCceEeec
Confidence 45788999999999999543221 0235788773 4543 0000 111111123799987
Q ss_pred -EeccCC----CC---CcCHH-HHHHHHHcccCceeeeEeecCCCceeeecCCCceEEEecCCCCCCCCCcccccCCCCC
Q 004363 232 -YSHAMG----NS---NGNIH-EYWEAIDSTFGLQGGFIWDWVDQGLLRELADGTKHWAYGGDFGDTPNDLNFCLNGLLW 302 (759)
Q Consensus 232 -y~h~~g----n~---~g~~~-~~w~~~~~~p~~~GgfiW~~~D~~~~~~~~~g~~~~~ygg~f~~~~~d~~f~~~Glv~ 302 (759)
..+..+ +. +|.+. ..|..+. -+..|...|.|... ..|.+ . -..||++
T Consensus 296 ~~~g~~~~~~~~~~~~pg~~~~~~~~~~A--~Ga~~i~~~~wr~~------~~g~E-----------~-----~~~g~~~ 351 (374)
T PF02449_consen 296 QQPGPVNWRPYNRPPRPGELRLWSWQAIA--HGADGILFWQWRQS------RFGAE-----------Q-----FHGGLVD 351 (374)
T ss_dssp E--S--SSSSS-----TTHHHHHHHHHHH--TT-S-EEEC-SB--------SSSTT-----------T-----TS--SB-
T ss_pred CCCCCCCCccCCCCCCCCHHHHHHHHHHH--HhCCeeEeeeccCC------CCCch-----------h-----hhcccCC
Confidence 222111 11 23222 3345544 45667777777421 11211 1 1359999
Q ss_pred CCC-CCCCcHHHHHHhhcc
Q 004363 303 PDR-TPHPALHEVKYVYQA 320 (759)
Q Consensus 303 ~dr-~pkp~~~~~k~~~qp 320 (759)
.|. +|...+.|++++-+-
T Consensus 352 ~dg~~~~~~~~e~~~~~~~ 370 (374)
T PF02449_consen 352 HDGREPTRRYREVAQLGRE 370 (374)
T ss_dssp TTS--B-HHHHHHHHHHHH
T ss_pred ccCCCCCcHHHHHHHHHHH
Confidence 999 899999999987653
No 82
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=29.03 E-value=51 Score=25.34 Aligned_cols=19 Identities=37% Similarity=0.459 Sum_probs=15.7
Q ss_pred EEEEEecCCeEEEEEEEee
Q 004363 563 IDYTIYGSGNVIVECNFKP 581 (759)
Q Consensus 563 ~~Y~i~~~G~i~v~~~~~~ 581 (759)
+.++|++||.|.+++..-.
T Consensus 1 I~~~I~~dG~V~~~v~G~~ 19 (48)
T PF11211_consen 1 IEFTIYPDGRVEEEVEGFK 19 (48)
T ss_pred CEEEECCCcEEEEEEEecc
Confidence 4689999999999987643
No 83
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=28.41 E-value=92 Score=37.14 Aligned_cols=46 Identities=13% Similarity=0.063 Sum_probs=37.3
Q ss_pred CHHHHHHHHHHHHHcCCCEEEc-----------CCCCC------h---------hHHHHHHHhcCCEEEeec
Q 004363 72 IESCMVKDLVLMKQNNINAVRN-----------SHYPQ------H---------PRWYELCDLFGLYMIDEA 117 (759)
Q Consensus 72 ~~e~~~~dl~~mK~~g~N~vR~-----------~h~p~------~---------~~~~dlcDe~Gi~V~~E~ 117 (759)
+.|..++-|..+|+||+++|=+ +.|.. . .+|.|.|-++||.|+.+.
T Consensus 163 ~~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~g~yAp~sryGtPedfk~fVD~aH~~GIgViLD~ 234 (628)
T COG0296 163 YFELAIELLPYLKELGITHIELMPVAEHPGDRSWGYQGTGYYAPTSRYGTPEDFKALVDAAHQAGIGVILDW 234 (628)
T ss_pred HHHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCCCcceeccccccCCCHHHHHHHHHHHHHcCCEEEEEe
Confidence 5788899999999999999987 22221 0 259999999999999886
No 84
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=28.29 E-value=2.4e+02 Score=31.32 Aligned_cols=60 Identities=18% Similarity=0.251 Sum_probs=45.6
Q ss_pred CCEEEEEEeeecCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEcCCCCCh--------------hHHHHHHHhcCCEEE
Q 004363 49 NGNPVVIRGVNRHEHHPRVGKTNIESCMVKDLVLMKQNNINAVRNSHYPQH--------------PRWYELCDLFGLYMI 114 (759)
Q Consensus 49 NGk~i~lrGvn~h~~~p~~g~~~~~e~~~~dl~~mK~~g~N~vR~~h~p~~--------------~~~~dlcDe~Gi~V~ 114 (759)
+|++++|-|-|- .-+.+++.+..+.+|+.|+..+|-+-+-+. ..+.+.|.+.||.++
T Consensus 116 ~~~~~~iaGpc~---------iE~~~~~~~~A~~lk~~g~~~~r~~~~kpRtsp~~f~g~~~e~l~~L~~~~~~~Gl~~~ 186 (360)
T PRK12595 116 DGNQSFIFGPCS---------VESYEQVEAVAKALKAKGLKLLRGGAFKPRTSPYDFQGLGVEGLKILKQVADEYGLAVI 186 (360)
T ss_pred CCCeeeEEeccc---------ccCHHHHHHHHHHHHHcCCcEEEccccCCCCCCccccCCCHHHHHHHHHHHHHcCCCEE
Confidence 356666666543 346899999999999999999998533221 257889999999999
Q ss_pred eec
Q 004363 115 DEA 117 (759)
Q Consensus 115 ~E~ 117 (759)
.+.
T Consensus 187 t~v 189 (360)
T PRK12595 187 SEI 189 (360)
T ss_pred Eee
Confidence 987
No 85
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=28.11 E-value=2.8e+02 Score=33.14 Aligned_cols=60 Identities=10% Similarity=0.022 Sum_probs=46.3
Q ss_pred EEEEeeecCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEcCCCCCh----hHHHHHHHhcCCEEEeec
Q 004363 53 VVIRGVNRHEHHPRVGKTNIESCMVKDLVLMKQNNINAVRNSHYPQH----PRWYELCDLFGLYMIDEA 117 (759)
Q Consensus 53 i~lrGvn~h~~~p~~g~~~~~e~~~~dl~~mK~~g~N~vR~~h~p~~----~~~~dlcDe~Gi~V~~E~ 117 (759)
..+||.|..++ ...+++.++..++++++.|+-.+|+-...++ ....+.+-+.|..+..-+
T Consensus 80 mL~Rg~N~vGy-----~~~~d~vv~~~v~~a~~~Gidv~Rifd~lnd~~n~~~~i~~~k~~G~~~~~~i 143 (596)
T PRK14042 80 MLLRGQNLLGY-----RNYADDVVRAFVKLAVNNGVDVFRVFDALNDARNLKVAIDAIKSHKKHAQGAI 143 (596)
T ss_pred EEecccccccc-----ccCChHHHHHHHHHHHHcCCCEEEEcccCcchHHHHHHHHHHHHcCCEEEEEE
Confidence 56899996433 2356788999999999999999999654443 457889999999777643
No 86
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=27.75 E-value=1.5e+02 Score=23.71 Aligned_cols=41 Identities=12% Similarity=0.045 Sum_probs=32.5
Q ss_pred HHHHHHHHHHcCCCEEEcCC---CCChhHHHHHHHhcCCEEEee
Q 004363 76 MVKDLVLMKQNNINAVRNSH---YPQHPRWYELCDLFGLYMIDE 116 (759)
Q Consensus 76 ~~~dl~~mK~~g~N~vR~~h---~p~~~~~~dlcDe~Gi~V~~E 116 (759)
.+.-++.+|+.|++++=++- ....+.++++|.++||-|+..
T Consensus 17 ~~~~~~~a~~~g~~~v~iTDh~~~~~~~~~~~~~~~~gi~~i~G 60 (67)
T smart00481 17 PEELVKRAKELGLKAIAITDHGNLFGAVEFYKAAKKAGIKPIIG 60 (67)
T ss_pred HHHHHHHHHHcCCCEEEEeeCCcccCHHHHHHHHHHcCCeEEEE
Confidence 44568899999999998742 334578999999999999863
No 87
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=26.30 E-value=9.5e+02 Score=26.88 Aligned_cols=104 Identities=13% Similarity=0.079 Sum_probs=60.6
Q ss_pred ecCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEcCC---CCC--h--------hHHHHHHHhcCCEEEeecc-ccccC-
Q 004363 59 NRHEHHPRVGKTNIESCMVKDLVLMKQNNINAVRNSH---YPQ--H--------PRWYELCDLFGLYMIDEAN-IETHG- 123 (759)
Q Consensus 59 n~h~~~p~~g~~~~~e~~~~dl~~mK~~g~N~vR~~h---~p~--~--------~~~~dlcDe~Gi~V~~E~~-~~~~g- 123 (759)
.|.+.+|..+.+.+.......++.++++|+..|=++. +|. + .++-++++++||-|..-.+ +-.|.
T Consensus 17 ~~~~~~~~g~~~~~~~~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e~~~~~~~lk~~L~~~GL~v~~v~~nl~~~~~ 96 (382)
T TIGR02631 17 GWVGRDPFGDATRTALDPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQERDQIVRRFKKALDETGLKVPMVTTNLFSHPV 96 (382)
T ss_pred CCCCCCCCCCCCCCCcCHHHHHHHHHHhCCCEEEecccccCCCCCChhHHHHHHHHHHHHHHHhCCeEEEeeccccCCcc
Confidence 3444466655545556677889999999999997752 231 1 2578899999998765332 11111
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHHH--HhcCCCceEEEEec
Q 004363 124 FYFSEHLKHPTMEPSWAAAMMDRVIGMV--ERDKNHASIICWSL 165 (759)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~mV--~r~rNHPSIi~Wsl 165 (759)
+.. ......++..++..++.+++.| -+--+-+.|.+|+.
T Consensus 97 ~~~---g~las~d~~vR~~ai~~~kraId~A~eLGa~~v~v~~G 137 (382)
T TIGR02631 97 FKD---GGFTSNDRSVRRYALRKVLRNMDLGAELGAETYVVWGG 137 (382)
T ss_pred ccC---CCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEccC
Confidence 110 1111235555554445444443 22335678999975
No 88
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=26.09 E-value=1.2e+02 Score=33.71 Aligned_cols=47 Identities=13% Similarity=0.148 Sum_probs=35.4
Q ss_pred CHHHHHHHHHHHHHcCCCEEEcC-CCCChh---------HHHHHHHhcCCEEEeecc
Q 004363 72 IESCMVKDLVLMKQNNINAVRNS-HYPQHP---------RWYELCDLFGLYMIDEAN 118 (759)
Q Consensus 72 ~~e~~~~dl~~mK~~g~N~vR~~-h~p~~~---------~~~dlcDe~Gi~V~~E~~ 118 (759)
+.+....-|+.|+++|+..|=|| |.|.++ .+.++|.++||.|+.+++
T Consensus 12 ~~~~~~~yi~~a~~~Gf~~iFTSL~ipe~~~~~~~~~~~~l~~~a~~~~~~v~~Dis 68 (357)
T PF05913_consen 12 SFEENKAYIEKAAKYGFKRIFTSLHIPEDDPEDYLERLKELLKLAKELGMEVIADIS 68 (357)
T ss_dssp -HHHHHHHHHHHHCTTEEEEEEEE---------HHHHHHHHHHHHHHCT-EEEEEE-
T ss_pred CHHHHHHHHHHHHHCCCCEEECCCCcCCCCHHHHHHHHHHHHHHHHHCCCEEEEECC
Confidence 67889999999999999999997 555542 478999999999999985
No 89
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.63 E-value=2.7e+02 Score=28.06 Aligned_cols=111 Identities=15% Similarity=0.132 Sum_probs=62.0
Q ss_pred EEEEEEeeEEEEEeCCEEEEC-----CEEEEEEeeecCCCCC--------CCCCCCCHHHHHHHHHHHHHcC-CCEEEc-
Q 004363 29 CESCLVGIRQVSKAPKQLLVN-----GNPVVIRGVNRHEHHP--------RVGKTNIESCMVKDLVLMKQNN-INAVRN- 93 (759)
Q Consensus 29 ~~~~~~GfR~ie~~~~~~~lN-----Gk~i~lrGvn~h~~~p--------~~g~~~~~e~~~~dl~~mK~~g-~N~vR~- 93 (759)
+.-..||.|.++++++++.|+ |++.+ |.+.+-.+-. +.+++-+-..+...|.-||+++ =|++=+
T Consensus 38 TiGvefg~r~~~id~k~IKlqiwDtaGqe~f-rsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImL 116 (216)
T KOG0098|consen 38 TIGVEFGARMVTIDGKQIKLQIWDTAGQESF-RSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIML 116 (216)
T ss_pred eeeeeeceeEEEEcCceEEEEEEecCCcHHH-HHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEE
Confidence 345678999998887776664 33321 2222111111 2233445566777788888884 777654
Q ss_pred -CC--------CCChhHHHHHHHhcCCEEEeeccccccCcccccCCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 004363 94 -SH--------YPQHPRWYELCDLFGLYMIDEANIETHGFYFSEHLKHPTMEPSWAAAMMDRVIGMVERDK 155 (759)
Q Consensus 94 -~h--------~p~~~~~~dlcDe~Gi~V~~E~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~mV~r~r 155 (759)
.+ -...++==..|.|+||.-+ |..-- ....-.+++.+-.+++++..+
T Consensus 117 iGNKsDL~~rR~Vs~EEGeaFA~ehgLifm-ETSak--------------t~~~VEEaF~nta~~Iy~~~q 172 (216)
T KOG0098|consen 117 IGNKSDLEARREVSKEEGEAFAREHGLIFM-ETSAK--------------TAENVEEAFINTAKEIYRKIQ 172 (216)
T ss_pred EcchhhhhccccccHHHHHHHHHHcCceee-hhhhh--------------hhhhHHHHHHHHHHHHHHHHH
Confidence 11 2233456678999999888 55210 111233556566667776544
No 90
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=24.93 E-value=2.8e+02 Score=27.08 Aligned_cols=94 Identities=17% Similarity=0.236 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHcCCCEEEcCCC-----CCh-------------hHHHHHHHhcCCEEEeeccccccCcccccCCCCCC
Q 004363 73 ESCMVKDLVLMKQNNINAVRNSHY-----PQH-------------PRWYELCDLFGLYMIDEANIETHGFYFSEHLKHPT 134 (759)
Q Consensus 73 ~e~~~~dl~~mK~~g~N~vR~~h~-----p~~-------------~~~~dlcDe~Gi~V~~E~~~~~~g~~~~~~~~~~~ 134 (759)
.+.+++-+++++++|+..++++-. +.. ..+.+.|.++|+.+..|.. ...... . .
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~----~~~~~~---~-~ 141 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIALENH----PGPFSE---T-P 141 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-S----SSSSSS---E-E
T ss_pred HHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEecc----cCcccc---c-h
Confidence 678999999999999999999733 111 1478889999999998863 222100 0 0
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCc-eEEEEecCCCCCCCccHHHHHHHH
Q 004363 135 MEPSWAAAMMDRVIGMVERDKNHA-SIICWSLGNEAGHGPNHSAAAGWI 182 (759)
Q Consensus 135 ~~~~~~~~~~~~~~~mV~r~rNHP-SIi~WslgNE~~~g~~~~~~~~~i 182 (759)
.. .+++.++++.. ++| .=+.|.++|-...+.+...+.+.+
T Consensus 142 ~~-------~~~~~~~l~~~-~~~~~~i~~D~~h~~~~~~~~~~~i~~~ 182 (213)
T PF01261_consen 142 FS-------VEEIYRLLEEV-DSPNVGICFDTGHLIMAGEDPDEAIKRL 182 (213)
T ss_dssp SS-------HHHHHHHHHHH-TTTTEEEEEEHHHHHHTTHHHHHHHHHH
T ss_pred hh-------HHHHHHHHhhc-CCCcceEEEehHHHHHcCCCHHHHHHHh
Confidence 01 23455666654 344 447777887766555544444433
No 91
>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases.; PDB: 3IK2_A 3ZQ9_A 2YJQ_B 2YKK_A 2YIH_A 2EEX_A 2EQD_A 2E0P_A 2E4T_A 2EO7_A ....
Probab=24.83 E-value=87 Score=32.61 Aligned_cols=55 Identities=22% Similarity=0.262 Sum_probs=31.9
Q ss_pred CCHHHHHHHHHHHHHHHHhcCC---CceEEEEecCCCCCC--C---------cc-------HHHHHHHHHhcCCCCeEE
Q 004363 135 MEPSWAAAMMDRVIGMVERDKN---HASIICWSLGNEAGH--G---------PN-------HSAAAGWIRGKDPSRLLH 192 (759)
Q Consensus 135 ~~~~~~~~~~~~~~~mV~r~rN---HPSIi~WslgNE~~~--g---------~~-------~~~~~~~ik~~DptR~v~ 192 (759)
+++.+.+.+ +.-|+.++-+ .-.|=+|+|.||+.. + .. .-++++.||++||+-.|.
T Consensus 101 ~~~~y~~ew---V~~l~~~~g~a~~~~gvk~y~lDNEP~LW~~TH~dVHP~~~t~~El~~r~i~~AkaiK~~DP~a~v~ 176 (239)
T PF12891_consen 101 DNPVYMDEW---VNYLVNKYGNASTNGGVKYYSLDNEPDLWHSTHRDVHPEPVTYDELRDRSIEYAKAIKAADPDAKVF 176 (239)
T ss_dssp SSEEEHHHH---HHHHHHHH--TTSTTS--EEEESS-GGGHHHHTTTT--S---HHHHHHHHHHHHHHHHHH-TTSEEE
T ss_pred ccHhHHHHH---HHHHHHHHhccccCCCceEEEecCchHhhcccccccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEe
Confidence 344566655 4455555544 457999999999852 1 11 236788999999998776
No 92
>PF11589 DUF3244: Domain of unknown function (DUF3244); InterPro: IPR021638 This family of proteins with unknown function appear to be restricted to Bacteroidetes. The protein may have an immunoglobulin-like beta-sandwich fold however this cannot be confirmed. ; PDB: 3D33_B 3SD2_A.
Probab=24.72 E-value=5e+02 Score=23.11 Aligned_cols=66 Identities=17% Similarity=0.151 Sum_probs=40.7
Q ss_pred hcceEEeeeccEEEEEeccCCCCCCCeEEEEEEE-eCCeEEEEEEeeCCcCCCCCEEEEEecCCCCcccCCCCCCceEEE
Q 004363 318 YQAIKVSLKKGTLKISNTNFFETTQGLEFSWVAH-GDGYKLGFGILSLPLIKPHSNYEIELKSSPWYSQWNSCSAEEIFL 396 (759)
Q Consensus 318 ~qpi~~~~~~~~i~v~N~~~f~~l~~~~~~w~l~-~dg~~v~~g~~~~~~v~p~~~~~i~lp~~~~~~~~~~~~~~e~~l 396 (759)
..|+.+.+.+..|.|... .++.++++ ++. .+|.+|-+..+.. ++++...|.|... ..++|.|
T Consensus 27 ~~Pi~a~i~~~~l~I~F~---~~~~~vtI--~I~d~~G~vVy~~~~~~---~~~~~~~I~L~~~---------~~G~Y~l 89 (106)
T PF11589_consen 27 PIPITASIDGNNLSIEFE---SPIGDVTI--TIKDSTGNVVYSETVSN---SAGQSITIDLNGL---------PSGEYTL 89 (106)
T ss_dssp --SEEEEEETTEEEEEES---S--SEEEE--EEEETT--EEEEEEESC---GGTTEEEEE-TTS----------SEEEEE
T ss_pred ccCcEEEEeCCEEEEEEc---CCCCCEEE--EEEeCCCCEEEEEEccC---CCCcEEEEEeCCC---------CCccEEE
Confidence 467777778888888543 35555555 454 5899998888743 4566778888643 3589999
Q ss_pred EEEE
Q 004363 397 TVTA 400 (759)
Q Consensus 397 ~i~~ 400 (759)
.|+-
T Consensus 90 ~i~~ 93 (106)
T PF11589_consen 90 EITN 93 (106)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9885
No 93
>PF07233 DUF1425: Protein of unknown function (DUF1425); InterPro: IPR010824 This family consists of several hypothetical bacterial proteins of around 125 residues in length. Several members of this family are described as putative lipoproteins and are often known as YcfL. The function of this family is unknown.; PDB: 3O0L_A.
Probab=24.36 E-value=2.6e+02 Score=24.54 Aligned_cols=48 Identities=15% Similarity=0.173 Sum_probs=24.3
Q ss_pred EEEEEeccCCCCCC-CeEEEEEEEeCCeEEEEE--Ee-eCCcCCCCCEEEEEecC
Q 004363 329 TLKISNTNFFETTQ-GLEFSWVAHGDGYKLGFG--IL-SLPLIKPHSNYEIELKS 379 (759)
Q Consensus 329 ~i~v~N~~~f~~l~-~~~~~w~l~~dg~~v~~g--~~-~~~~v~p~~~~~i~lp~ 379 (759)
.+.|.|+... ++. .|+|.| +..+|-.+... .. .+ .|+|+++..|..-.
T Consensus 29 ~~~l~N~~~~-~~~l~Yrf~W-yD~~G~~v~~~~~~w~~~-~l~~~~~~~l~~~a 80 (94)
T PF07233_consen 29 QATLSNKSSK-PLTLQYRFYW-YDKQGLEVDPEQSPWQSL-TLPGGQTVTLSAVA 80 (94)
T ss_dssp EEEEEE-SSS--EEEEEEEEE-E-TTS-EE--TT---EEE-EE-TT-EEEEEEE-
T ss_pred EEEEEECCCC-cEEEEEEEEE-ECCCCCCcCCCCCCCEEE-EEcCCCEEEEEEEC
Confidence 6789998752 221 356666 35788877544 11 33 68899888887643
No 94
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=24.05 E-value=2.2e+02 Score=29.99 Aligned_cols=78 Identities=17% Similarity=0.313 Sum_probs=45.7
Q ss_pred eEEEEecCCCCCCCccHHHHHHHHHhcC---CCCeEEecCCCC-CCCCcceeCCCCCChHHHHHHHcCCC-CCCcEEEEe
Q 004363 159 SIICWSLGNEAGHGPNHSAAAGWIRGKD---PSRLLHYEGGGS-RTPSTDIVCPMYMRVWDIVMIAKDPT-ETRPLILYS 233 (759)
Q Consensus 159 SIi~WslgNE~~~g~~~~~~~~~ik~~D---ptR~v~~~~~~~-~~~~~Di~~~~Y~~~~~~~~~~~~~~-~~kP~i~y~ 233 (759)
-+++++-||-.-.| .|....+.+= -...++|.-.|. .......--++|.+++.+-+++.+.. ...++|+||
T Consensus 61 ~~lly~hGNa~Dlg----q~~~~~~~l~~~ln~nv~~~DYSGyG~S~G~psE~n~y~Di~avye~Lr~~~g~~~~Iil~G 136 (258)
T KOG1552|consen 61 PTLLYSHGNAADLG----QMVELFKELSIFLNCNVVSYDYSGYGRSSGKPSERNLYADIKAVYEWLRNRYGSPERIILYG 136 (258)
T ss_pred eEEEEcCCcccchH----HHHHHHHHHhhcccceEEEEecccccccCCCcccccchhhHHHHHHHHHhhcCCCceEEEEE
Confidence 35678888844434 4555444431 234566542221 12223222367888888777777544 356777799
Q ss_pred ccCCCCC
Q 004363 234 HAMGNSN 240 (759)
Q Consensus 234 h~~gn~~ 240 (759)
++||..+
T Consensus 137 ~SiGt~~ 143 (258)
T KOG1552|consen 137 QSIGTVP 143 (258)
T ss_pred ecCCchh
Confidence 9999865
No 95
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=23.67 E-value=3.3e+02 Score=26.55 Aligned_cols=75 Identities=11% Similarity=0.213 Sum_probs=39.7
Q ss_pred HHHHHHHHHcCCCEEEc-CCCCChhHHHHHHHhcCCEEEeeccccccCcccccCCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 004363 77 VKDLVLMKQNNINAVRN-SHYPQHPRWYELCDLFGLYMIDEANIETHGFYFSEHLKHPTMEPSWAAAMMDRVIGMVERDK 155 (759)
Q Consensus 77 ~~dl~~mK~~g~N~vR~-~h~p~~~~~~dlcDe~Gi~V~~E~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~mV~r~r 155 (759)
...+..++++|+.+|=. ..-+.+..+++.|++.||-+..= ++. +.. .+ .....+..+.++.+++..-+
T Consensus 22 ~~n~~fL~~L~LKTII~L~~e~~~~~~~~f~~~~~I~l~~~-~~~--~~~------~~--~~~~~~~~v~~aL~~ild~~ 90 (164)
T PF03162_consen 22 PANFPFLERLGLKTIINLRPEPPSQDFLEFAEENGIKLIHI-PMS--SSK------DP--WVPISEEQVAEALEIILDPR 90 (164)
T ss_dssp HHHHHHHHHHT-SEEEE--SS---HHHHHHHHHTT-EEEE----------------GG--G----HHHHHHHHHHHH-GG
T ss_pred hhhHHHHHHCCCceEEEecCCCCCHHHHHHHhhcCceEEEe-ccc--ccc------Cc--cccCCHHHHHHHHHHHhCCC
Confidence 35678899999999644 55656678899999999988762 211 000 00 00112333445556666678
Q ss_pred CCceEEE
Q 004363 156 NHASIIC 162 (759)
Q Consensus 156 NHPSIi~ 162 (759)
|||-.+.
T Consensus 91 n~PvLiH 97 (164)
T PF03162_consen 91 NYPVLIH 97 (164)
T ss_dssp G-SEEEE
T ss_pred CCCEEEE
Confidence 9998874
No 96
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=23.40 E-value=55 Score=37.81 Aligned_cols=91 Identities=16% Similarity=0.137 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHcCCCEEEcCC-----CC--------Chh------HHHHHHHhcCCEEEeeccccccCccccc----C
Q 004363 73 ESCMVKDLVLMKQNNINAVRNSH-----YP--------QHP------RWYELCDLFGLYMIDEANIETHGFYFSE----H 129 (759)
Q Consensus 73 ~e~~~~dl~~mK~~g~N~vR~~h-----~p--------~~~------~~~dlcDe~Gi~V~~E~~~~~~g~~~~~----~ 129 (759)
.-....|+++||++|+++.|+|- .| +.. .+.+..=+.||-.+..+- | |.... .
T Consensus 90 Yh~ykeDv~Lmk~lgv~afRFSIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTLf---H-wDlPq~LeDe 165 (524)
T KOG0626|consen 90 YHRYKEDVKLMKELGVDAFRFSISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTLF---H-WDLPQALEDE 165 (524)
T ss_pred hhhhHHHHHHHHHcCCCeEEEEeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEEe---c-CCCCHHHHHH
Confidence 45789999999999999999952 22 111 234444457998888763 1 11000 0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEEEecCCCCC
Q 004363 130 LKHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAG 170 (759)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~mV~r~rNHPSIi~WslgNE~~ 170 (759)
+.. --+++..+.+.+.+.-..+++-++ |=.|.--||+.
T Consensus 166 YgG-wLn~~ivedF~~yA~~CF~~fGDr--VK~WiT~NEP~ 203 (524)
T KOG0626|consen 166 YGG-WLNPEIVEDFRDYADLCFQEFGDR--VKHWITFNEPN 203 (524)
T ss_pred hcc-ccCHHHHHHHHHHHHHHHHHhccc--ceeeEEecccc
Confidence 000 013455556666666666666665 45799999985
No 97
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=23.02 E-value=8.3e+02 Score=28.57 Aligned_cols=129 Identities=13% Similarity=0.118 Sum_probs=69.7
Q ss_pred EEEEEEeeecCCCCCCCCCCCC--HHHHHHHHHHHHHcCCCEEEcC-CCCC--hhHHHHHHHhcCCEE-EeeccccccCc
Q 004363 51 NPVVIRGVNRHEHHPRVGKTNI--ESCMVKDLVLMKQNNINAVRNS-HYPQ--HPRWYELCDLFGLYM-IDEANIETHGF 124 (759)
Q Consensus 51 k~i~lrGvn~h~~~p~~g~~~~--~e~~~~dl~~mK~~g~N~vR~~-h~p~--~~~~~dlcDe~Gi~V-~~E~~~~~~g~ 124 (759)
+.|.|-|.|.-.+ |.... ...+..-++.+++.++.-||++ -+|. +++++++..+.|-.+ ...+|+++-.-
T Consensus 259 keI~L~g~n~~~y----g~d~~~~~~~l~~Ll~~I~~~~i~~ir~~s~~P~~i~deli~~m~~~g~~~~~l~lgvQSgsd 334 (509)
T PRK14327 259 KEITLLGQNVNAY----GKDFEDIEYGLGDLMDEIRKIDIPRVRFTTSHPRDFDDHLIEVLAKGGNLVEHIHLPVQSGST 334 (509)
T ss_pred cEEEEEeeccccC----cccccccchHHHHHHHHHHhCCCceEEEeecCcccCCHHHHHHHHhcCCccceEEeccCCCCH
Confidence 5667777663211 11111 1234455677777788888874 2342 467899998888543 55666654211
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHHHHhcCCC-ceE-----EEEecCCCCCCCccHHHHHHHHHhcCCCCeEEe
Q 004363 125 YFSEHLKHPTMEPSWAAAMMDRVIGMVERDKNH-ASI-----ICWSLGNEAGHGPNHSAAAGWIRGKDPSRLLHY 193 (759)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~mV~r~rNH-PSI-----i~WslgNE~~~g~~~~~~~~~ik~~DptR~v~~ 193 (759)
.....+.-.. + .+++.+.|++.+.+ |.| +|.++-+|. -..+.+..++++++.+.+...+
T Consensus 335 ~vLk~M~R~~-t-------~e~~~~~v~~lr~~~p~i~i~tdiIvGfPgET--~edf~~Tl~~v~~l~~d~~~~f 399 (509)
T PRK14327 335 EVLKIMARKY-T-------RESYLELVRKIKEAIPNVALTTDIIVGFPNET--DEQFEETLSLYREVGFDHAYTF 399 (509)
T ss_pred HHHHhcCCCC-C-------HHHHHHHHHHHHHhCCCcEEeeeEEEeCCCCC--HHHHHHHHHHHHHcCCCeEEEe
Confidence 0000011001 1 12334455554443 433 566666664 2457888999999988776554
No 98
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=22.23 E-value=4.9e+02 Score=27.64 Aligned_cols=54 Identities=13% Similarity=0.078 Sum_probs=41.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCCEEEcCCCCChhHHHHHHHhcCCEEEeec
Q 004363 64 HPRVGKTNIESCMVKDLVLMKQNNINAVRNSHYPQHPRWYELCDLFGLYMIDEA 117 (759)
Q Consensus 64 ~p~~g~~~~~e~~~~dl~~mK~~g~N~vR~~h~p~~~~~~dlcDe~Gi~V~~E~ 117 (759)
-|..++.-.++.++.=.++||+.|+.+|.+..........+...+.||-|+--+
T Consensus 83 mPf~sy~~~e~a~~na~rl~~eaGa~aVkiEgg~~~~~~i~~l~~~gIpV~gHi 136 (263)
T TIGR00222 83 LPFMSYATPEQALKNAARVMQETGANAVKLEGGEWLVETVQMLTERGVPVVGHL 136 (263)
T ss_pred CCcCCCCCHHHHHHHHHHHHHHhCCeEEEEcCcHhHHHHHHHHHHCCCCEEEec
Confidence 455555434566777788999999999999776555567799999999999433
No 99
>PLN00196 alpha-amylase; Provisional
Probab=21.19 E-value=3.3e+02 Score=31.10 Aligned_cols=65 Identities=17% Similarity=0.164 Sum_probs=46.0
Q ss_pred EEEEEeeecCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEcC---------CCCC------h----------hHHHHHH
Q 004363 52 PVVIRGVNRHEHHPRVGKTNIESCMVKDLVLMKQNNINAVRNS---------HYPQ------H----------PRWYELC 106 (759)
Q Consensus 52 ~i~lrGvn~h~~~p~~g~~~~~e~~~~dl~~mK~~g~N~vR~~---------h~p~------~----------~~~~dlc 106 (759)
.++|.|.+|... +..|. ....+...|..+|++|+++|=+. .|-+ + ..+.+.|
T Consensus 25 ~v~~Q~F~W~~~-~~~gg--~~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~a 101 (428)
T PLN00196 25 QVLFQGFNWESW-KQNGG--WYNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAF 101 (428)
T ss_pred CEEEEeeccCCC-CCCCc--CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHH
Confidence 578899998542 33222 35668888999999999999762 1211 1 1478888
Q ss_pred HhcCCEEEeeccc
Q 004363 107 DLFGLYMIDEANI 119 (759)
Q Consensus 107 De~Gi~V~~E~~~ 119 (759)
.+.||-|+.++-+
T Consensus 102 H~~GIkVilDvV~ 114 (428)
T PLN00196 102 HGKGVQVIADIVI 114 (428)
T ss_pred HHCCCEEEEEECc
Confidence 8899999999854
No 100
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=21.11 E-value=2.3e+02 Score=30.65 Aligned_cols=53 Identities=17% Similarity=0.223 Sum_probs=42.2
Q ss_pred CHHHHHHHHHHHHHcC---------------------------CCEEEcCCCCChhHHHHHHHhcCCEEEeeccccccCc
Q 004363 72 IESCMVKDLVLMKQNN---------------------------INAVRNSHYPQHPRWYELCDLFGLYMIDEANIETHGF 124 (759)
Q Consensus 72 ~~e~~~~dl~~mK~~g---------------------------~N~vR~~h~p~~~~~~dlcDe~Gi~V~~E~~~~~~g~ 124 (759)
+.....+.++.+.+.| +|-|.+|-|-+.+.+.++|.+.||.|..=.|+.+++.
T Consensus 136 ~~~~tW~amE~~~~~Gl~rsIGVSNF~~~~le~ll~~~ki~P~vnQvE~HP~~~Q~~L~~fCk~~~I~v~AYSpLg~~~~ 215 (300)
T KOG1577|consen 136 DRIETWKAMEKLVDEGLVRSIGVSNFNIKQLEELLNLAKIKPAVNQVECHPYLQQKKLVEFCKSKGIVVTAYSPLGSPGR 215 (300)
T ss_pred hHHHHHHHHHHHHHcCCceEeeeecCCHHHHHHHHhcCCCCCccceeeccCCcChHHHHHHHhhCCcEEEEecCCCCCCC
Confidence 4555667777777777 5777888788888999999999999999888876654
No 101
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=21.02 E-value=5.5e+02 Score=27.89 Aligned_cols=97 Identities=26% Similarity=0.212 Sum_probs=51.4
Q ss_pred eeecCCCCCCCCCCC-CHHHHHHHHHHHHHcCCCEEEcCCCCChhHHHHHHHhcCCEEEeeccccccCcccccCCCCCCC
Q 004363 57 GVNRHEHHPRVGKTN-IESCMVKDLVLMKQNNINAVRNSHYPQHPRWYELCDLFGLYMIDEANIETHGFYFSEHLKHPTM 135 (759)
Q Consensus 57 Gvn~h~~~p~~g~~~-~~e~~~~dl~~mK~~g~N~vR~~h~p~~~~~~dlcDe~Gi~V~~E~~~~~~g~~~~~~~~~~~~ 135 (759)
|+|+ ...|..+ ++... +.++|+.|+..||+ |-.++..+.+..--||-|+..+|-+. . ..
T Consensus 2 Gvny----G~~~~nlp~p~~v---v~l~ks~~i~~vri--~d~~~~iL~a~a~S~i~v~v~vpN~~--l---------~~ 61 (310)
T PF00332_consen 2 GVNY----GRVGNNLPSPCKV---VSLLKSNGITKVRI--YDADPSILRAFAGSGIEVMVGVPNED--L---------AS 61 (310)
T ss_dssp EEEE-------SSS---HHHH---HHHHHHTT--EEEE--SS--HHHHHHHTTS--EEEEEE-GGG--H---------HH
T ss_pred eEec----cCccCCCCCHHHH---HHHHHhcccccEEe--ecCcHHHHHHHhcCCceeeeccChHH--H---------HH
Confidence 6776 2333333 44444 66789999999999 56778899999999999998775210 0 00
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCceEEEEecCCCCCCCc
Q 004363 136 EPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAGHGP 173 (759)
Q Consensus 136 ~~~~~~~~~~~~~~mV~r~rNHPSIi~WslgNE~~~g~ 173 (759)
-...+.....=++.-|..+...-.|-.=.+|||...+.
T Consensus 62 la~~~~~A~~Wv~~nv~~~~~~~~i~~i~VGnEv~~~~ 99 (310)
T PF00332_consen 62 LASSQSAAGSWVRTNVLPYLPAVNIRYIAVGNEVLTGT 99 (310)
T ss_dssp HHHHHHHHHHHHHHHTCTCTTTSEEEEEEEEES-TCCS
T ss_pred hccCHHHHhhhhhhcccccCcccceeeeecccccccCc
Confidence 00111111111344555555555688889999997653
No 102
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=20.67 E-value=4.8e+02 Score=24.60 Aligned_cols=51 Identities=14% Similarity=0.124 Sum_probs=34.0
Q ss_pred EEEEEeccCCCCCCCeEEEEEEE-eCCeEEEEEEee-----------CCcCCCCCEEEEEecCC
Q 004363 329 TLKISNTNFFETTQGLEFSWVAH-GDGYKLGFGILS-----------LPLIKPHSNYEIELKSS 380 (759)
Q Consensus 329 ~i~v~N~~~f~~l~~~~~~w~l~-~dg~~v~~g~~~-----------~~~v~p~~~~~i~lp~~ 380 (759)
+.+|+|..++.-. --.+.-++. .+|+++.+..+. ...++||++..|.+...
T Consensus 73 ~g~i~N~~~~~~~-~P~l~l~L~D~~g~~l~~r~~~P~~yl~~~~~~~~~l~pg~~~~~~~~~~ 135 (149)
T PF11906_consen 73 SGTIRNRADFPQA-LPALELSLLDAQGQPLARRVFTPADYLPPGLAAQAGLPPGESVPFRLRLE 135 (149)
T ss_pred EEEEEeCCCCccc-CceEEEEEECCCCCEEEEEEEChHHhcccccccccccCCCCeEEEEEEee
Confidence 3578999876322 124555666 678888877772 22689999998887643
No 103
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=20.48 E-value=3.7e+02 Score=28.52 Aligned_cols=88 Identities=11% Similarity=0.040 Sum_probs=52.4
Q ss_pred CCCCC-CCCHHHHHHHHHHHHHcCCCEEEcCCCCChhHHHHHHHhcCCEEEeeccccccCcccccCCCCCCCCHHHHHHH
Q 004363 65 PRVGK-TNIESCMVKDLVLMKQNNINAVRNSHYPQHPRWYELCDLFGLYMIDEANIETHGFYFSEHLKHPTMEPSWAAAM 143 (759)
Q Consensus 65 p~~g~-~~~~e~~~~dl~~mK~~g~N~vR~~h~p~~~~~~dlcDe~Gi~V~~E~~~~~~g~~~~~~~~~~~~~~~~~~~~ 143 (759)
|...+ .-..+.++.=.++||+.|.++|.+..........+..-+.||-|+--+.+.-......+.+..-..+.+-...+
T Consensus 85 Pf~sy~~s~e~av~nA~rl~ke~GadaVKlEGg~~~~~~i~~l~~~GIPV~gHiGLtPQ~~~~~GGyr~qGk~~~~a~~l 164 (261)
T PF02548_consen 85 PFGSYQASPEQAVRNAGRLMKEAGADAVKLEGGAEIAETIKALVDAGIPVMGHIGLTPQSVHQLGGYRVQGKTAEEAEKL 164 (261)
T ss_dssp -TTSSTSSHHHHHHHHHHHHHTTT-SEEEEEBSGGGHHHHHHHHHTT--EEEEEES-GGGHHHHTSS--CSTSHHHHHHH
T ss_pred CcccccCCHHHHHHHHHHHHHhcCCCEEEeccchhHHHHHHHHHHCCCcEEEEecCchhheeccCCceEEecCHHHHHHH
Confidence 44444 33456677888999999999999987777778889999999999987754211100011112223345555556
Q ss_pred HHHHHHHHH
Q 004363 144 MDRVIGMVE 152 (759)
Q Consensus 144 ~~~~~~mV~ 152 (759)
++.++++-+
T Consensus 165 ~~~A~ale~ 173 (261)
T PF02548_consen 165 LEDAKALEE 173 (261)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666654
No 104
>PF13663 DUF4148: Domain of unknown function (DUF4148)
Probab=20.47 E-value=1.1e+02 Score=24.49 Aligned_cols=30 Identities=13% Similarity=0.171 Sum_probs=26.4
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEcCC-CCCh
Q 004363 70 TNIESCMVKDLVLMKQNNINAVRNSH-YPQH 99 (759)
Q Consensus 70 ~~~~e~~~~dl~~mK~~g~N~vR~~h-~p~~ 99 (759)
..|+++++.||..+++.|.+..+-+. ||.+
T Consensus 18 ~~TRAqV~aEL~~a~~~G~~~~~~~~~YP~~ 48 (58)
T PF13663_consen 18 PLTRAQVRAELAQAEAAGYLPSGESDSYPDD 48 (58)
T ss_pred cccHHHHHHHHHHHHHcCCCCCCCCCCCCch
Confidence 48899999999999999999988876 8754
Done!