BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004365
(759 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 7/114 (6%)
Query: 25 EVVKN-YEKDERIHKVKITRSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDER 83
EVVK+ Y++ + KIT G T LH+AV E+ + L+ + ++ I D+
Sbjct: 86 EVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLI------ENGASVRIKDKF 139
Query: 84 GSTPLHIAAGLGNVSMCKCIATADRKLIGERNHENETPFFLAALHGHKDAFLCL 137
PLH AA +G++ + + + + + ++ + TP F A GH DA + L
Sbjct: 140 NQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLL 193
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 66/158 (41%), Gaps = 10/158 (6%)
Query: 43 RSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKC 102
+ G LH +VS EI L + + + + D+ G TP HIA +GN+ + K
Sbjct: 34 QDGRIPLHWSVSFQAHEITSFL---LSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKS 90
Query: 103 IATADRKLIGERNHENETPFFLAALHGHKDAFLCLHCLCASVDDGYTYSRRNDGETI-LH 161
+ DR L + N L K F L +++G + ++ I LH
Sbjct: 91 L--YDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFL---IENGASVRIKDKFNQIPLH 145
Query: 162 CAISGDYFDLAFQIIHLYEKLVNSVNEKGVSPL-HVLA 198
A S L + L + VN +++G +PL H LA
Sbjct: 146 RAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALA 183
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 7/114 (6%)
Query: 25 EVVKN-YEKDERIHKVKITRSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDER 83
EVVK+ Y++ + KIT G T LH+AV E+ + L+ + ++ I D+
Sbjct: 86 EVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLI------ENGASVRIKDKF 139
Query: 84 GSTPLHIAAGLGNVSMCKCIATADRKLIGERNHENETPFFLAALHGHKDAFLCL 137
PLH AA +G++ + + + + + ++ + TP F A GH DA + L
Sbjct: 140 NQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLL 193
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 66/158 (41%), Gaps = 10/158 (6%)
Query: 43 RSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKC 102
+ G LH +VS EI L + + + + D+ G TP HIA +GN+ + K
Sbjct: 34 QDGRIPLHWSVSFQAHEITSFL---LSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKS 90
Query: 103 IATADRKLIGERNHENETPFFLAALHGHKDAFLCLHCLCASVDDGYTYSRRNDGETI-LH 161
+ DR L + N L K F L +++G + ++ I LH
Sbjct: 91 L--YDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFL---IENGASVRIKDKFNQIPLH 145
Query: 162 CAISGDYFDLAFQIIHLYEKLVNSVNEKGVSPL-HVLA 198
A S L + L + VN +++G +PL H LA
Sbjct: 146 RAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALA 183
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 7/114 (6%)
Query: 25 EVVKN-YEKDERIHKVKITRSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDER 83
EVVK+ Y++ + KIT G T LH+AV E+ + L+ + ++ I D+
Sbjct: 86 EVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLI------ENGASVRIKDKF 139
Query: 84 GSTPLHIAAGLGNVSMCKCIATADRKLIGERNHENETPFFLAALHGHKDAFLCL 137
PLH AA +G++ + + + + + ++ + TP F A GH DA + L
Sbjct: 140 NQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLL 193
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 66/158 (41%), Gaps = 10/158 (6%)
Query: 43 RSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKC 102
+ G LH +VS EI L + + + + D+ G TP HIA +GN+ + K
Sbjct: 34 QDGRIPLHWSVSFQAHEITSFL---LSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKS 90
Query: 103 IATADRKLIGERNHENETPFFLAALHGHKDAFLCLHCLCASVDDGYTYSRRNDGETI-LH 161
+ DR L + N L K F L +++G + ++ I LH
Sbjct: 91 L--YDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFL---IENGASVRIKDKFNQIPLH 145
Query: 162 CAISGDYFDLAFQIIHLYEKLVNSVNEKGVSPL-HVLA 198
A S L + L + VN +++G +PL H LA
Sbjct: 146 RAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALA 183
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 76/168 (45%), Gaps = 25/168 (14%)
Query: 42 TRSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCK 101
T +G T LHIA +G E V L+ EK+ +A ++G TPLH+AA G V + +
Sbjct: 110 TTAGHTPLHIAAREGHVETVLALL----EKEASQACMT--KKGFTPLHVAAKYGKVRVAE 163
Query: 102 CIATADRKLIGERNHENE------TPFFLAALHGHKDAFLCLHCLCASVDDGYTYSRRND 155
+ D H N TP +A H + D L G +S +
Sbjct: 164 LLLERDA-------HPNAAGKNGLTPLHVAVHHNNLDIVKLL-----LPRGGSPHSPAWN 211
Query: 156 GETILHCAISGDYFDLAFQIIHLYEKLVNSVNEKGVSPLHVLATKPNA 203
G T LH A + ++A ++ Y N+ + +GV+PLH+ A + +A
Sbjct: 212 GYTPLHIAAKQNQVEVARSLLQ-YGGSANAESVQGVTPLHLAAQEGHA 258
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 71/154 (46%), Gaps = 17/154 (11%)
Query: 47 TALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCIATA 106
T LH+A G IV++L+ Q+ + + + + TPLH+AA G+ + K +
Sbjct: 16 TPLHVASFMGHLPIVKNLL------QRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQN 69
Query: 107 DRKLIGERNHENETPFFLAALHGHKDAFLCLHCLCASVDDGYTYSRRNDGETILHCAISG 166
K + + +++TP AA GH + L A+ + T G T LH A
Sbjct: 70 KAK-VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTA-----GHTPLHIAARE 123
Query: 167 DYFDLAFQIIHLYEKLVNS--VNEKGVSPLHVLA 198
+ + ++ L EK + + +KG +PLHV A
Sbjct: 124 GHVE---TVLALLEKEASQACMTKKGFTPLHVAA 154
Score = 36.2 bits (82), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 7/95 (7%)
Query: 43 RSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKC 102
+SG T LH+ +G + + L IK ++A T G TPLH+A+ GN+ + K
Sbjct: 276 KSGLTPLHLVAQEGHVPVADVL---IKHGVMVDATT---RMGYTPLHVASHYGNIKLVKF 329
Query: 103 IATADRKLIGERNHENETPFFLAALHGHKDAFLCL 137
+ + + +P AA GH D L
Sbjct: 330 LLQHQAD-VNAKTKLGYSPLHQAAQQGHTDIVTLL 363
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 63/155 (40%), Gaps = 19/155 (12%)
Query: 44 SGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCI 103
+G T LHIA Q E+ L+ Q + +G TPLH+AA G+ M +
Sbjct: 211 NGYTPLHIAAKQNQVEVARSLL------QYGGSANAESVQGVTPLHLAAQEGHAEMVALL 264
Query: 104 AT--ADRKLIGERNHENETPFFLAALHGHKDAFLCLHCLCASVDDGYTYSRRNDGETILH 161
+ A+ L N TP L A GH L VD + G T LH
Sbjct: 265 LSKQANGNL---GNKSGLTPLHLVAQEGHVPVADVLIKHGVMVD-----ATTRMGYTPLH 316
Query: 162 CAIS-GDYFDLAFQIIHLYEKLVNSVNEKGVSPLH 195
A G+ + F + H + VN+ + G SPLH
Sbjct: 317 VASHYGNIKLVKFLLQHQAD--VNAKTKLGYSPLH 349
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 82/192 (42%), Gaps = 19/192 (9%)
Query: 47 TALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLG-----NVSMCK 101
T LH+AV Q EI E L+ + + + D RG+TPLH+A G V
Sbjct: 47 TPLHLAVITNQPEIAEALLGAGCDPE------LRDFRGNTPLHLACEQGCLASVGVLTQS 100
Query: 102 CIATADRKLIGERNHENETPFFLAALHGHKDAFLCLHCLCASVDDGYTYSRRNDGETILH 161
C ++ N+ T LA++HG+ L L A V+ +G T LH
Sbjct: 101 CTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVN----AQEPCNGRTALH 156
Query: 162 CAISGDYFDLAFQIIHLYEKLVNSVNEKGVSPLHVLATKPNAFRSGSHLGRCIGTIYHCI 221
A+ DL ++ VN V +G SP + +P+ R LG+ T+ +
Sbjct: 157 LAVDLQNPDLVSLLLKCGAD-VNRVTYQGYSPYQLTWGRPST-RIQQQLGQL--TLENLQ 212
Query: 222 FVDKLQEETSYD 233
+ + ++E SYD
Sbjct: 213 MLPESEDEESYD 224
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 45.8 bits (107), Expect = 8e-05, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 11/88 (12%)
Query: 45 GGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCIA 104
G T LH+A + G EIVE L+R + A+ D G+TPLH+AA LG++ + + +
Sbjct: 35 GRTPLHMAAAVGHLEIVEVLLR---NGADVNAV---DTNGTTPLHLAASLGHLEIVEVLL 88
Query: 105 T--ADRKLIGERNHENETPFFLAALHGH 130
AD + ++ TP +LAA GH
Sbjct: 89 KYGAD---VNAKDATGITPLYLAAYWGH 113
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 41 ITRSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMC 100
+ +G T LH+A S G EIVE L++ + + D G TPL++AA G++ +
Sbjct: 64 VDTNGTTPLHLAASLGHLEIVEVLLKYGAD------VNAKDATGITPLYLAAYWGHLEIV 117
Query: 101 KCI 103
+ +
Sbjct: 118 EVL 120
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 45.8 bits (107), Expect = 9e-05, Method: Composition-based stats.
Identities = 38/131 (29%), Positives = 62/131 (47%), Gaps = 18/131 (13%)
Query: 44 SGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEA---LTIGDERGSTPLHIAAGLGNVSMC 100
+G T LH+A +G E+V+ L LEA + D+ G TPLH+AA G++ +
Sbjct: 1 NGRTPLHLAARNGHLEVVKLL---------LEAGADVNAKDKNGRTPLHLAARNGHLEVV 51
Query: 101 KCIATADRKLIGERNHENETPFFLAALHGHKDAFLCLHCLCASVDDGYTYSRRNDGETIL 160
K + A + ++ TP LAA +GH + L A V+ ++ +G T L
Sbjct: 52 KLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN-----AKDKNGRTPL 105
Query: 161 HCAISGDYFDL 171
H A + ++
Sbjct: 106 HLAARNGHLEV 116
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 13/91 (14%)
Query: 43 RSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEA---LTIGDERGSTPLHIAAGLGNVSM 99
++G T LH+A +G E+V+ L LEA + D+ G TPLH+AA G++ +
Sbjct: 33 KNGRTPLHLAARNGHLEVVKLL---------LEAGADVNAKDKNGRTPLHLAARNGHLEV 83
Query: 100 CKCIATADRKLIGERNHENETPFFLAALHGH 130
K + A + ++ TP LAA +GH
Sbjct: 84 VKLLLEAGAD-VNAKDKNGRTPLHLAARNGH 113
Score = 37.4 bits (85), Expect = 0.032, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 11/84 (13%)
Query: 454 TPILIAAKNGITEIVEKILESFPVAIHDINSEKKN---IVLLAVENRQPHVYQLLLKTTI 510
TP+ +AA+NG E+V+ +LE A D+N++ KN + LA N V +LLL+
Sbjct: 4 TPLHLAARNGHLEVVKLLLE----AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA-- 57
Query: 511 MKDSVFRKVDDQGNSALHLAATLG 534
+ D G + LHLAA G
Sbjct: 58 --GADVNAKDKNGRTPLHLAARNG 79
Score = 34.7 bits (78), Expect = 0.22, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 12/67 (17%)
Query: 43 RSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEA---LTIGDERGSTPLHIAAGLGNVSM 99
++G T LH+A +G E+V+ L LEA + D+ G TPLH+AA G++ +
Sbjct: 66 KNGRTPLHLAARNGHLEVVKLL---------LEAGADVNAKDKNGRTPLHLAARNGHLEV 116
Query: 100 CKCIATA 106
K + A
Sbjct: 117 VKLLLEA 123
Score = 32.0 bits (71), Expect = 1.5, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 7/57 (12%)
Query: 454 TPILIAAKNGITEIVEKILESFPVAIHDINSEKKN---IVLLAVENRQPHVYQLLLK 507
TP+ +AA+NG E+V+ +LE A D+N++ KN + LA N V +LLL+
Sbjct: 70 TPLHLAARNGHLEVVKLLLE----AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 122
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 48/171 (28%), Positives = 71/171 (41%), Gaps = 17/171 (9%)
Query: 47 TALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLG-----NVSMCK 101
T LH+AV Q EI E L+ + + + D RG+TPLH+A G V
Sbjct: 44 TPLHLAVITNQPEIAEALLGAGCDPE------LRDFRGNTPLHLACEQGCLASVGVLTQS 97
Query: 102 CIATADRKLIGERNHENETPFFLAALHGHKDAFLCLHCLCASVDDGYTYSRRNDGETILH 161
C ++ N+ T LA++HG+ L L A V+ +G T LH
Sbjct: 98 CTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVN----AQEPCNGRTALH 153
Query: 162 CAISGDYFDLAFQIIHLYEKLVNSVNEKGVSPLHVLATKPNAFRSGSHLGR 212
A+ DL ++ VN V +G SP + +P+ R LG+
Sbjct: 154 LAVDLQNPDLVSLLLKCGAD-VNRVTYQGYSPYQLTWGRPST-RIQQQLGQ 202
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 11/100 (11%)
Query: 4 GIDIDQLKKDLFKRAMKGEWKEVVKNYEKDERIHKVKITRSGGTALHIAVSDGQEEIVED 63
G+DI+ +K+ + ++ + + I+ V+ +SGGTALH+A + G E+++
Sbjct: 163 GVDIEAARKEEERIMLRD-----ARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKL 217
Query: 64 LVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCI 103
L+ Q + I D G TPLH AA G C+ +
Sbjct: 218 LI------QARYDVNIKDYDGWTPLHAAAHWGKEEACRIL 251
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 41/138 (29%), Positives = 63/138 (45%), Gaps = 17/138 (12%)
Query: 1 MATGIDIDQLKKD------LFKRAMKGEWKEVVKNYEKDERIHKVKITRSGGTALHIAVS 54
MA G D++ KD L R E EV+ D + G T LH+A
Sbjct: 22 MANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD----KDGYTPLHLAAR 77
Query: 55 DGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCIATADRKLIGER 114
+G EIVE L++ + + D+ G TPLH+AA G++ + + + A + +
Sbjct: 78 EGHLEIVEVLLKAGAD------VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAQ 130
Query: 115 NHENETPFFLAALHGHKD 132
+ +TPF LA GH+D
Sbjct: 131 DKFGKTPFDLAIREGHED 148
Score = 35.8 bits (81), Expect = 0.094, Method: Composition-based stats.
Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 7/114 (6%)
Query: 81 DERGSTPLHIAAGLGNVSMCKCIATADRKLIGERNHENETPFFLAALHGHKDAFLCLHCL 140
D+ G TPLH+AA G++ + + + A + ++ + TP LAA GH + L
Sbjct: 32 DKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKA 90
Query: 141 CASVDDGYTYSRRNDGETILHCAISGDYFDLAFQIIHLYEKLVNSVNEKGVSPL 194
A V+ ++ DG T LH A + ++ +++ VN+ ++ G +P
Sbjct: 91 GADVN-----AKDKDGYTPLHLAAREGHLEIV-EVLLKAGADVNAQDKFGKTPF 138
Score = 30.4 bits (67), Expect = 3.8, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 11/84 (13%)
Query: 454 TPILIAAKNGITEIVEKILESFPVAIHDINSEKKN-IVLLAVENRQPH--VYQLLLKTTI 510
TP+ +AA+ G EIVE +L+ A D+N++ K+ L + R+ H + ++LLK
Sbjct: 37 TPLHLAAREGHLEIVEVLLK----AGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA-- 90
Query: 511 MKDSVFRKVDDQGNSALHLAATLG 534
+ D G + LHLAA G
Sbjct: 91 --GADVNAKDKDGYTPLHLAAREG 112
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 11/88 (12%)
Query: 45 GGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCIA 104
G T LH+A S+G EIVE L +K + A D G TPLH+AA G++ + + +
Sbjct: 47 GYTPLHLAASNGHLEIVEVL---LKNGADVNA---SDLTGITPLHLAAATGHLEIVEVLL 100
Query: 105 T--ADRKLIGERNHENETPFFLAALHGH 130
AD + +++ TP LAA +GH
Sbjct: 101 KHGAD---VNAYDNDGHTPLHLAAKYGH 125
Score = 34.7 bits (78), Expect = 0.20, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Query: 44 SGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCI 103
+G T LH+A + G EIVE L +K + A D G TPLH+AA G++ + + +
Sbjct: 79 TGITPLHLAAATGHLEIVEVL---LKHGADVNAY---DNDGHTPLHLAAKYGHLEIVEVL 132
Score = 31.2 bits (69), Expect = 2.4, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 11/84 (13%)
Query: 454 TPILIAAKNGITEIVEKILESFPVAIHDINSEKKNIVL---LAVENRQPHVYQLLLKTTI 510
TP+ +AA NG EIVE +L++ D+N+ + LA + ++LLK
Sbjct: 49 TPLHLAASNGHLEIVEVLLKNGA----DVNASDLTGITPLHLAAATGHLEIVEVLLK--- 101
Query: 511 MKDSVFRKVDDQGNSALHLAATLG 534
+ D+ G++ LHLAA G
Sbjct: 102 -HGADVNAYDNDGHTPLHLAAKYG 124
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 7/88 (7%)
Query: 43 RSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKC 102
+ G T LH+A +G EIVE L++ + + D+ G TPLH+AA G++ + +
Sbjct: 45 KDGYTPLHLAAREGHLEIVEVLLKAGAD------VNAKDKDGYTPLHLAAREGHLEIVEV 98
Query: 103 IATADRKLIGERNHENETPFFLAALHGH 130
+ A + ++ + TP LAA GH
Sbjct: 99 LLKAGAD-VNAKDKDGYTPLHLAAREGH 125
Score = 36.2 bits (82), Expect = 0.068, Method: Composition-based stats.
Identities = 37/138 (26%), Positives = 63/138 (45%), Gaps = 17/138 (12%)
Query: 1 MATGIDIDQLKKD------LFKRAMKGEWKEVVKNYEKDERIHKVKITRSGGTALHIAVS 54
MA G D++ KD L R E EV+ D + G T LH+A
Sbjct: 34 MANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD----KDGYTPLHLAAR 89
Query: 55 DGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCIATADRKLIGER 114
+G EIVE L++ + + D+ G TPLH+AA G++ + + + A + +
Sbjct: 90 EGHLEIVEVLLKAGAD------VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAQ 142
Query: 115 NHENETPFFLAALHGHKD 132
+ +T F ++ +G++D
Sbjct: 143 DKFGKTAFDISIDNGNED 160
Score = 35.8 bits (81), Expect = 0.090, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 81 DERGSTPLHIAAGLGNVSMCKCIATADRKLIGERNHENETPFFLAALHGHKDAFLCLHCL 140
D+ G TPLH+AA G++ + + + A + ++ + TP LAA GH + L
Sbjct: 44 DKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKA 102
Query: 141 CASVDDGYTYSRRNDGETILHCA 163
A V+ ++ DG T LH A
Sbjct: 103 GADVN-----AKDKDGYTPLHLA 120
Score = 30.8 bits (68), Expect = 3.2, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 11/84 (13%)
Query: 454 TPILIAAKNGITEIVEKILESFPVAIHDINSEKKN-IVLLAVENRQPH--VYQLLLKTTI 510
TP+ +AA+ G EIVE +L+ A D+N++ K+ L + R+ H + ++LLK
Sbjct: 49 TPLHLAAREGHLEIVEVLLK----AGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA-- 102
Query: 511 MKDSVFRKVDDQGNSALHLAATLG 534
+ D G + LHLAA G
Sbjct: 103 --GADVNAKDKDGYTPLHLAAREG 124
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 11/89 (12%)
Query: 44 SGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCI 103
SG T LH+A + G EIVE L +K + A+ I GSTPLH+AA +G++ + + +
Sbjct: 46 SGLTPLHLAATYGHLEIVEVL---LKHGADVNAIDIX---GSTPLHLAALIGHLEIVEVL 99
Query: 104 AT--ADRKLIGERNHENETPFFLAALHGH 130
AD + + +TP LAA+ GH
Sbjct: 100 LKHGAD---VNAVDTWGDTPLHLAAIMGH 125
Score = 34.3 bits (77), Expect = 0.28, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 45 GGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCI 103
G T LH+A G EIVE L +K + A+ D G TPLH+AA +G++ + + +
Sbjct: 80 GSTPLHLAALIGHLEIVEVL---LKHGADVNAV---DTWGDTPLHLAAIMGHLEIVEVL 132
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 10/85 (11%)
Query: 81 DERGSTPLHIAAGLGNVSMCKCIAT--ADRKLIGERNHENETPFFLAALHGHKDAFLCLH 138
D G TPLH+AA G++ + + + AD I + TP LAAL GH + L
Sbjct: 44 DASGLTPLHLAATYGHLEIVEVLLKHGADVNAI---DIXGSTPLHLAALIGHLEIVEVLL 100
Query: 139 CLCASVDDGYTYSRRNDGETILHCA 163
A V+ T+ G+T LH A
Sbjct: 101 KHGADVNAVDTW-----GDTPLHLA 120
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 11/89 (12%)
Query: 44 SGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCI 103
SG T LH+A + G EIVE L +K + A+ I GSTPLH+AA +G++ + + +
Sbjct: 46 SGLTPLHLAATYGHLEIVEVL---LKHGADVNAIDI---MGSTPLHLAALIGHLEIVEVL 99
Query: 104 AT--ADRKLIGERNHENETPFFLAALHGH 130
AD + + +TP LAA+ GH
Sbjct: 100 LKHGAD---VNAVDTWGDTPLHLAAIMGH 125
Score = 34.3 bits (77), Expect = 0.27, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 45 GGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCI 103
G T LH+A G EIVE L +K + A+ D G TPLH+AA +G++ + + +
Sbjct: 80 GSTPLHLAALIGHLEIVEVL---LKHGADVNAV---DTWGDTPLHLAAIMGHLEIVEVL 132
Score = 30.4 bits (67), Expect = 4.2, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 10/85 (11%)
Query: 81 DERGSTPLHIAAGLGNVSMCKCIAT--ADRKLIGERNHENETPFFLAALHGHKDAFLCLH 138
D G TPLH+AA G++ + + + AD I + TP LAAL GH + L
Sbjct: 44 DASGLTPLHLAATYGHLEIVEVLLKHGADVNAI---DIMGSTPLHLAALIGHLEIVEVLL 100
Query: 139 CLCASVDDGYTYSRRNDGETILHCA 163
A V+ T+ G+T LH A
Sbjct: 101 KHGADVNAVDTW-----GDTPLHLA 120
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 7/88 (7%)
Query: 43 RSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKC 102
+ G T LH+A +G EIVE L++ + + D+ G TPLH+AA G++ + +
Sbjct: 33 KDGYTPLHLAAREGHLEIVEVLLKAGAD------VNAKDKDGYTPLHLAAREGHLEIVEV 86
Query: 103 IATADRKLIGERNHENETPFFLAALHGH 130
+ A + ++ + TP LAA GH
Sbjct: 87 LLKAGAD-VNAKDKDGYTPLHLAAREGH 113
Score = 35.8 bits (81), Expect = 0.085, Method: Composition-based stats.
Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 7/114 (6%)
Query: 81 DERGSTPLHIAAGLGNVSMCKCIATADRKLIGERNHENETPFFLAALHGHKDAFLCLHCL 140
D+ G TPLH+AA G++ + + + A + ++ + TP LAA GH + L
Sbjct: 32 DKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKA 90
Query: 141 CASVDDGYTYSRRNDGETILHCAISGDYFDLAFQIIHLYEKLVNSVNEKGVSPL 194
A V+ ++ DG T LH A + ++ +++ VN+ ++ G +P
Sbjct: 91 GADVN-----AKDKDGYTPLHLAAREGHLEIV-EVLLKAGADVNAQDKFGKTPF 138
Score = 30.4 bits (67), Expect = 3.6, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 11/84 (13%)
Query: 454 TPILIAAKNGITEIVEKILESFPVAIHDINSEKKN-IVLLAVENRQPH--VYQLLLKTTI 510
TP+ +AA+ G EIVE +L+ A D+N++ K+ L + R+ H + ++LLK
Sbjct: 37 TPLHLAAREGHLEIVEVLLK----AGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA-- 90
Query: 511 MKDSVFRKVDDQGNSALHLAATLG 534
+ D G + LHLAA G
Sbjct: 91 --GADVNAKDKDGYTPLHLAAREG 112
Score = 29.3 bits (64), Expect = 8.8, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
Query: 43 RSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKC 102
+ G T LH+A +G EIVE L++ + + D+ G TP +A GN + +
Sbjct: 99 KDGYTPLHLAAREGHLEIVEVLLKAGAD------VNAQDKFGKTPFDLAIDNGNEDIAEV 152
Query: 103 IATA 106
+ A
Sbjct: 153 LQKA 156
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 11/88 (12%)
Query: 45 GGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCIA 104
G T LH+A G EIVE L++ + + D G+TPLH+AA G++ + + +
Sbjct: 47 GHTPLHLAAKTGHLEIVEVLLKYGAD------VNAWDNYGATPLHLAADNGHLEIVEVLL 100
Query: 105 T--ADRKLIGERNHENETPFFLAALHGH 130
AD + +++E TP LAA GH
Sbjct: 101 KHGAD---VNAKDYEGFTPLHLAAYDGH 125
Score = 33.9 bits (76), Expect = 0.39, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Query: 45 GGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCI 103
G T LH+A +G EIVE L +K + A D G TPLH+AA G++ + + +
Sbjct: 80 GATPLHLAADNGHLEIVEVL---LKHGADVNA---KDYEGFTPLHLAAYDGHLEIVEVL 132
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 454 TPILIAAKNGITEIVEKILESFPVAIHDINSEKKNIVLLAVENRQPHVYQLLLKTTIMKD 513
TP+ +AAK G EIVE +L+ + ++ ++ + LA +N + ++LLK
Sbjct: 49 TPLHLAAKTGHLEIVEVLLK-YGADVNAWDNYGATPLHLAADNGHLEIVEVLLK----HG 103
Query: 514 SVFRKVDDQGNSALHLAATLG 534
+ D +G + LHLAA G
Sbjct: 104 ADVNAKDYEGFTPLHLAAYDG 124
Score = 28.9 bits (63), Expect = 9.9, Method: Composition-based stats.
Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 10/109 (9%)
Query: 81 DERGSTPLHIAAGLGNVSMCKCIATADRKLIGERNHENETPFFLAALHGHKDAFLCLHCL 140
D G TPLH+AA G++ + + + + N+ TP LAA +GH + L
Sbjct: 44 DWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNY-GATPLHLAADNGHLEIVEVLLKH 102
Query: 141 CASVDDGYTYSRRNDGETILHCAISGDYFDLAFQIIHLYEKLVNSVNEK 189
A V+ ++ +G T LH A +D +I+ + K VN +
Sbjct: 103 GADVN-----AKDYEGFTPLHLAA----YDGHLEIVEVLLKYGADVNAQ 142
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 11/89 (12%)
Query: 44 SGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCI 103
SG T LH+A +G EIVE L +K + A+ D G TPL +AA G++ + + +
Sbjct: 46 SGWTPLHLAAFNGHLEIVEVL---LKNGADVNAV---DHAGMTPLRLAALFGHLEIVEVL 99
Query: 104 AT--ADRKLIGERNHENETPFFLAALHGH 130
AD + + E TP LAA+ GH
Sbjct: 100 LKNGAD---VNANDMEGHTPLHLAAMFGH 125
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 81 DERGSTPLHIAAGLGNVSMCKCIAT--ADRKLIGERNHENETPFFLAALHGH 130
D G TPLH+AA G++ + + + AD + +H TP LAAL GH
Sbjct: 44 DASGWTPLHLAAFNGHLEIVEVLLKNGAD---VNAVDHAGMTPLRLAALFGH 92
Score = 30.4 bits (67), Expect = 3.8, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 41 ITRSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMC 100
+ +G T L +A G EIVE L +K + A D G TPLH+AA G++ +
Sbjct: 76 VDHAGMTPLRLAALFGHLEIVEVL---LKNGADVNA---NDMEGHTPLHLAAMFGHLEIV 129
Query: 101 KCI 103
+ +
Sbjct: 130 EVL 132
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 17/92 (18%)
Query: 44 SGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEA---LTIGDERGSTPLHIAAGLGNVSMC 100
+G T LH+A +G E+V+ L LEA + D+ G TPLH+AA G++ +
Sbjct: 1 NGRTPLHLAARNGHLEVVKLL---------LEAGADVNAKDKNGRTPLHLAARNGHLEVV 51
Query: 101 KCI--ATADRKLIGERNHENETPFFLAALHGH 130
K + A AD + ++ TP LAA +GH
Sbjct: 52 KLLLEAGAD---VNAKDKNGRTPLHLAARNGH 80
Score = 37.4 bits (85), Expect = 0.030, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 11/84 (13%)
Query: 454 TPILIAAKNGITEIVEKILESFPVAIHDINSEKKN---IVLLAVENRQPHVYQLLLKTTI 510
TP+ +AA+NG E+V+ +LE A D+N++ KN + LA N V +LLL+
Sbjct: 4 TPLHLAARNGHLEVVKLLLE----AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA-- 57
Query: 511 MKDSVFRKVDDQGNSALHLAATLG 534
+ D G + LHLAA G
Sbjct: 58 --GADVNAKDKNGRTPLHLAARNG 79
Score = 34.7 bits (78), Expect = 0.21, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 12/67 (17%)
Query: 43 RSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEA---LTIGDERGSTPLHIAAGLGNVSM 99
++G T LH+A +G E+V+ L LEA + D+ G TPLH+AA G++ +
Sbjct: 33 KNGRTPLHLAARNGHLEVVKLL---------LEAGADVNAKDKNGRTPLHLAARNGHLEV 83
Query: 100 CKCIATA 106
K + A
Sbjct: 84 VKLLLEA 90
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 43.1 bits (100), Expect = 6e-04, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Query: 43 RSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKC 102
R+G +H A GQ + ++ L+ + + I D G+ PLH+AA G++ + +
Sbjct: 68 RTGFAVIHDAARAGQLDTLQTLLEFQAD------VNIEDNEGNLPLHLAAKEGHLRVVEF 121
Query: 103 IATADRKLIGERNHENETPFFLAALHGHKD 132
+ +G RNH+ +T LA L+G +
Sbjct: 122 LVKHTASNVGHRNHKGDTACDLARLYGRNE 151
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 57/121 (47%), Gaps = 16/121 (13%)
Query: 45 GGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCIA 104
G T LH+A +G +E+V+ L+ Q D G TPLH+AA G+ + K +
Sbjct: 37 GKTPLHLAAENGHKEVVKLLL------SQGADPNAKDSDGKTPLHLAAENGHKEVVKLLL 90
Query: 105 T--ADRKLIGERNHENETPFFLAALHGHKDAFLCLHCLCASVDDGYTYSRRNDGETILHC 162
+ AD ++ + +TP LAA +GHK+ L L D + S DG T L
Sbjct: 91 SQGADPNA---KDSDGKTPLHLAAENGHKEVVKLL--LSQGADPNTSDS---DGRTPLDL 142
Query: 163 A 163
A
Sbjct: 143 A 143
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 58/120 (48%), Gaps = 16/120 (13%)
Query: 46 GTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCIAT 105
G L A +G ++ V+DL+ + + D G TPLH+AA G+ + K + +
Sbjct: 5 GKRLIEAAENGNKDRVKDLL------ENGADVNASDSDGKTPLHLAAENGHKEVVKLLLS 58
Query: 106 --ADRKLIGERNHENETPFFLAALHGHKDAFLCLHCLCASVDDGYTYSRRNDGETILHCA 163
AD ++ + +TP LAA +GHK+ L L D ++ +DG+T LH A
Sbjct: 59 QGADPNA---KDSDGKTPLHLAAENGHKEVVKLL--LSQGAD---PNAKDSDGKTPLHLA 110
Score = 35.8 bits (81), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Query: 453 ETPILIAAKNGITEIVEKILESFPVAIHDINSEKKNIVLLAVENRQPHVYQLLLKTTIMK 512
+TP+ +AA+NG E+V K+L S + +S+ K + LA EN V +LLL
Sbjct: 38 KTPLHLAAENGHKEVV-KLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADP 96
Query: 513 DSVFRKVDDQGNSALHLAATLGDHK 537
++ D G + LHLAA G HK
Sbjct: 97 NA----KDSDGKTPLHLAAENG-HK 116
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 11/95 (11%)
Query: 45 GGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCIA 104
G T LH+A +G +E+V+ L+ Q D G TPLH+AA G+ + K +
Sbjct: 70 GKTPLHLAAENGHKEVVKLLL------SQGADPNAKDSDGKTPLHLAAENGHKEVVKLLL 123
Query: 105 T--ADRKLIGERNHENETPFFLAALHGHKDAFLCL 137
+ AD + + TP LA HG+++ L
Sbjct: 124 SQGADPNT---SDSDGRTPLDLAREHGNEEVVKLL 155
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 11/88 (12%)
Query: 45 GGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCIA 104
G T LH+ V++G EI+E L++ + + D+ G TPLH+AA G++ + + +
Sbjct: 47 GITPLHLVVNNGHLEIIEVLLKYAAD------VNASDKSGWTPLHLAAYRGHLEIVEVLL 100
Query: 105 T--ADRKLIGERNHENETPFFLAALHGH 130
AD + +++ TP LAA GH
Sbjct: 101 KYGAD---VNAMDYQGYTPLHLAAEDGH 125
Score = 35.4 bits (80), Expect = 0.12, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 6/61 (9%)
Query: 43 RSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKC 102
+SG T LH+A G EIVE L +K + A+ D +G TPLH+AA G++ + +
Sbjct: 78 KSGWTPLHLAAYRGHLEIVEVL---LKYGADVNAM---DYQGYTPLHLAAEDGHLEIVEV 131
Query: 103 I 103
+
Sbjct: 132 L 132
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 68/151 (45%), Gaps = 17/151 (11%)
Query: 46 GTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCIAT 105
G L A +G ++ V+DL+ + + D G TPLH AA G+ + K + +
Sbjct: 5 GKRLIEAAENGNKDRVKDLI------ENGADVNASDSDGRTPLHYAAKEGHKEIVKLLIS 58
Query: 106 --ADRKLIGERNHENETPFFLAALHGHKDAFLCLHCLCASVDDGYTYSRRNDGETILHCA 163
AD + ++ + TP AA GHK+ L A V+ ++ +DG T LH A
Sbjct: 59 KGAD---VNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVN-----AKDSDGRTPLHYA 110
Query: 164 ISGDYFDLAFQIIHLYEKLVNSVNEKGVSPL 194
+ ++ +I VN+ + G +PL
Sbjct: 111 AKEGHKEIVKLLISKGAD-VNTSDSDGRTPL 140
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 55/121 (45%), Gaps = 16/121 (13%)
Query: 45 GGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCIA 104
G T LH A +G +EIV+ L+ + + D G TPLH AA G+ + K +
Sbjct: 37 GRTPLHYAAKEGHKEIVKLLI------SKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLI 90
Query: 105 T--ADRKLIGERNHENETPFFLAALHGHKDAFLCLHCLCASVDDGYTYSRRNDGETILHC 162
+ AD + ++ + TP AA GHK+ L A V+ + +DG T L
Sbjct: 91 SKGAD---VNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVN-----TSDSDGRTPLDL 142
Query: 163 A 163
A
Sbjct: 143 A 143
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 6/90 (6%)
Query: 43 RSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKC 102
R+G +H A G + ++ L+ + + I D G+ PLH+AA G++ + +
Sbjct: 68 RTGNAVIHDAARAGFLDTLQTLLEFQAD------VNIEDNEGNLPLHLAAKEGHLRVVEF 121
Query: 103 IATADRKLIGERNHENETPFFLAALHGHKD 132
+ +G RNH+ +T LA L+G +
Sbjct: 122 LVKHTASNVGHRNHKGDTACDLARLYGRNE 151
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 45 GGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCIA 104
G T LH+A G EIVE L +K + A D GSTPLH+AA G++ + + +
Sbjct: 47 GWTPLHLAAYWGHLEIVEVL---LKNGADVNAY---DTLGSTPLHLAAHFGHLEIVEVLL 100
Query: 105 T--ADRKLIGERNHENETPFFLAALHGH 130
AD + ++ TP LAA GH
Sbjct: 101 KNGAD---VNAKDDNGITPLHLAANRGH 125
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 56/129 (43%), Gaps = 9/129 (6%)
Query: 77 LTIGDERGSTPLHIAAGLGNVSMCKCIATADRKLIGERNHENETPFFLAALHGHKDAFLC 136
+ + + GS+PLH+AA G + + G RN + P LA GH C
Sbjct: 79 VNVTSQDGSSPLHVAALHGRADLIPLLLKHGAN-AGARNADQAVPLHLACQQGHFQVVKC 137
Query: 137 LHCLCASVDDGYTYSRRN-DGETILHCAISGDYFDLAFQIIHLYEKLVNSVNEKGVSPLH 195
L +D ++++ G T L A SG + +L ++ + +N+ N KG + LH
Sbjct: 138 L------LDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQ-HGASINASNNKGNTALH 190
Query: 196 VLATKPNAF 204
+ + F
Sbjct: 191 EAVIEKHVF 199
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 11/89 (12%)
Query: 44 SGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCI 103
+G T LH+A ++GQ EIVE L +K + A D G TPLH+AA G++ + + +
Sbjct: 38 NGLTPLHLAAANGQLEIVEVL---LKNGADVNA---SDSAGITPLHLAAYDGHLEIVEVL 91
Query: 104 AT--ADRKLIGERNHENETPFFLAALHGH 130
AD + + TP LAAL G
Sbjct: 92 LKHGAD---VNAYDRAGWTPLHLAALSGQ 117
Score = 34.3 bits (77), Expect = 0.27, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Query: 44 SGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCI 103
+G T LH+A DG EIVE L +K + A D G TPLH+AA G + + + +
Sbjct: 71 AGITPLHLAAYDGHLEIVEVL---LKHGADVNAY---DRAGWTPLHLAALSGQLEIVEVL 124
Score = 29.6 bits (65), Expect = 6.3, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 11/87 (12%)
Query: 46 GTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCIAT 105
G L A + GQ+ D VRI+ + D+ G TPLH+AA G + + + +
Sbjct: 7 GKKLLEAAAAGQD----DEVRILMANGA--DVNATDDNGLTPLHLAAANGQLEIVEVLLK 60
Query: 106 --ADRKLIGERNHENETPFFLAALHGH 130
AD + + TP LAA GH
Sbjct: 61 NGAD---VNASDSAGITPLHLAAYDGH 84
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 6/90 (6%)
Query: 43 RSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKC 102
R+G +H A G + ++ L+ + + I D G+ PLH+AA G++ + +
Sbjct: 68 RTGFAVIHDAARAGFLDTLQTLLEFQAD------VNIEDNEGNLPLHLAAKEGHLRVVEF 121
Query: 103 IATADRKLIGERNHENETPFFLAALHGHKD 132
+ +G RNH+ +T LA L+G +
Sbjct: 122 LVKHTASNVGHRNHKGDTACDLARLYGRNE 151
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 6/90 (6%)
Query: 43 RSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKC 102
R+G +H A G + ++ L+ + + I D G+ PLH+AA G++ + +
Sbjct: 68 RTGFAVIHDAARAGFLDTLQTLLEFQAD------VNIEDNEGNLPLHLAAKEGHLRVVEF 121
Query: 103 IATADRKLIGERNHENETPFFLAALHGHKD 132
+ +G RNH+ +T LA L+G +
Sbjct: 122 LVKHTASNVGHRNHKGDTACDLARLYGRNE 151
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 39.7 bits (91), Expect = 0.007, Method: Composition-based stats.
Identities = 33/88 (37%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 45 GGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCIA 104
G T LH+A G EIVE L +K + AL D GSTPLH+AA G++ + + +
Sbjct: 47 GDTPLHLAARVGHLEIVEVL---LKNGADVNAL---DFSGSTPLHLAAKRGHLEIVEVLL 100
Query: 105 T--ADRKLIGERNHENETPFFLAALHGH 130
AD + + TP LAA GH
Sbjct: 101 KYGAD---VNADDTIGSTPLHLAADTGH 125
Score = 37.7 bits (86), Expect = 0.025, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Query: 44 SGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCI 103
SG T LH+A G EIVE L++ + + D GSTPLH+AA G++ + + +
Sbjct: 79 SGSTPLHLAAKRGHLEIVEVLLKYGAD------VNADDTIGSTPLHLAADTGHLEIVEVL 132
Score = 31.6 bits (70), Expect = 1.8, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 11/118 (9%)
Query: 81 DERGSTPLHIAAGLGNVSMCKCIAT--ADRKLIGERNHENETPFFLAALHGHKDAFLCLH 138
D G TPLH+AA +G++ + + + AD + + TP LAA GH + L
Sbjct: 44 DTYGDTPLHLAARVGHLEIVEVLLKNGAD---VNALDFSGSTPLHLAAKRGHLEIVEVLL 100
Query: 139 CLCASVDDGYTYSRRNDGETILHCAISGDYFDLAFQIIHLYEKLVNSVNEKGVSPLHV 196
A V+ T G T LH A + ++ +++ Y VN+ ++ G + +
Sbjct: 101 KYGADVNADDTI-----GSTPLHLAADTGHLEIV-EVLLKYGADVNAQDKFGKTAFDI 152
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Query: 43 RSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKC 102
R+G +H A G + ++ L+ E Q + I D G+ PLH+AA G++ + +
Sbjct: 68 RTGFAVIHDAARAGFLDTLQTLL----ENQA--DVNIEDNEGNLPLHLAAKEGHLRVVEF 121
Query: 103 IATADRKLIGERNHENETPFFLAALHGHKD 132
+ +G RNH+ +T LA L+G +
Sbjct: 122 LVKHTASNVGHRNHKGDTACDLARLYGRNE 151
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 45 GGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCK 101
G TALH AV G EIV+ LV+ + D G TPLH AA NV +CK
Sbjct: 70 GITALHNAVCAGHTEIVKFLVQFGVN------VNAADSDGWTPLHCAASCNNVQVCK 120
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 45 GGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCK 101
G TALH AV G EIV+ LV+ + D G TPLH AA NV +CK
Sbjct: 70 GITALHNAVCAGHTEIVKFLVQFGVN------VNAADSDGWTPLHCAASCNNVQVCK 120
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 38.9 bits (89), Expect = 0.012, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 44/89 (49%), Gaps = 11/89 (12%)
Query: 44 SGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCI 103
SG T LH+A G EIVE L +K + A D+ G TPLH+AA G++ + + +
Sbjct: 46 SGKTPLHLAAIKGHLEIVEVL---LKHGADVNA---ADKMGDTPLHLAALYGHLEIVEVL 99
Query: 104 AT--ADRKLIGERNHENETPFFLAALHGH 130
AD + + TP LAA GH
Sbjct: 100 LKNGAD---VNATDTYGFTPLHLAADAGH 125
Score = 36.6 bits (83), Expect = 0.055, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 11/118 (9%)
Query: 81 DERGSTPLHIAAGLGNVSMCKCIAT--ADRKLIGERNHENETPFFLAALHGHKDAFLCLH 138
D+ G TPLH+AA G++ + + + AD + + +TP LAAL+GH + L
Sbjct: 44 DDSGKTPLHLAAIKGHLEIVEVLLKHGAD---VNAADKMGDTPLHLAALYGHLEIVEVLL 100
Query: 139 CLCASVDDGYTYSRRNDGETILHCAISGDYFDLAFQIIHLYEKLVNSVNEKGVSPLHV 196
A V+ TY G T LH A + ++ +++ Y VN+ ++ G + +
Sbjct: 101 KNGADVNATDTY-----GFTPLHLAADAGHLEIV-EVLLKYGADVNAQDKFGKTAFDI 152
Score = 34.3 bits (77), Expect = 0.26, Method: Composition-based stats.
Identities = 36/109 (33%), Positives = 50/109 (45%), Gaps = 16/109 (14%)
Query: 1 MATGIDI----DQLKKDLFKRAMKG--EWKEVVKNYEKDERIHKVKITRSGGTALHIAVS 54
MA G D+ D K L A+KG E EV+ + D + G T LH+A
Sbjct: 34 MANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVN----AADKMGDTPLHLAAL 89
Query: 55 DGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCI 103
G EIVE L +K + A D G TPLH+AA G++ + + +
Sbjct: 90 YGHLEIVEVL---LKNGADVNAT---DTYGFTPLHLAADAGHLEIVEVL 132
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 38.5 bits (88), Expect = 0.012, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 43/88 (48%), Gaps = 11/88 (12%)
Query: 45 GGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCIA 104
G T LH+A G EIVE L +K + A D G TPLH+AA G++ + + +
Sbjct: 47 GWTPLHLAAYFGHLEIVEVL---LKNGADVNA---DDSLGVTPLHLAADRGHLEVVEVLL 100
Query: 105 T--ADRKLIGERNHENETPFFLAALHGH 130
AD + +H TP LAA GH
Sbjct: 101 KNGAD---VNANDHNGFTPLHLAANIGH 125
Score = 34.7 bits (78), Expect = 0.18, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Query: 45 GGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCI 103
G T LH+A G E+VE L +K + A D G TPLH+AA +G++ + + +
Sbjct: 80 GVTPLHLAADRGHLEVVEVL---LKNGADVNA---NDHNGFTPLHLAANIGHLEIVEVL 132
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 38.5 bits (88), Expect = 0.013, Method: Composition-based stats.
Identities = 40/123 (32%), Positives = 56/123 (45%), Gaps = 13/123 (10%)
Query: 10 LKKDLFKRAMKGEWKEVVKNYEKDERIHKVKITRSGGTALHIAVSDGQEEIVEDLVRIIK 69
L K L + A G+ EV ++ V T G T LH+A G EIVE L +K
Sbjct: 14 LGKKLLEAARAGQDDEVRILIANGADVNAVDNT--GLTPLHLAAVSGHLEIVEVL---LK 68
Query: 70 EKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCIAT--ADRKLIGERNHENETPFFLAAL 127
++A D G TPLH+AA G++ + + + AD + + TP LAA
Sbjct: 69 HGADVDA---ADVYGFTPLHLAAMTGHLEIVEVLLKYGAD---VNAFDMTGSTPLHLAAD 122
Query: 128 HGH 130
GH
Sbjct: 123 EGH 125
Score = 34.3 bits (77), Expect = 0.29, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Query: 45 GGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCI 103
G T LH+A G EIVE L +K + A D GSTPLH+AA G++ + + +
Sbjct: 80 GFTPLHLAAMTGHLEIVEVL---LKYGADVNAF---DMTGSTPLHLAADEGHLEIVEVL 132
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 38.5 bits (88), Expect = 0.015, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
Query: 44 SGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCI 103
+G T LH+A G EIVE L +K + A D G TPLH+AA G++ + + +
Sbjct: 46 TGWTPLHLAAHFGHLEIVEVL---LKNGADVNA---KDSLGVTPLHLAARRGHLEIVEVL 99
Query: 104 ATADRKLIGERNHENETPFFLAALHGH 130
+ +H TP LAA GH
Sbjct: 100 LKNGADVNASDSH-GFTPLHLAAKRGH 125
Score = 33.5 bits (75), Expect = 0.50, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Query: 45 GGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCI 103
G T LH+A G EIVE L +K + A D G TPLH+AA G++ + + +
Sbjct: 80 GVTPLHLAARRGHLEIVEVL---LKNGADVNA---SDSHGFTPLHLAAKRGHLEIVEVL 132
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 13/96 (13%)
Query: 412 SLTDHNVVADTHKLSRNNGKNSEDRNEGGKTGSTIPDMAKRETPILIAAKNGITEIVEKI 471
S D +V A TH L ++G + R E GKT P+++A + +V+++
Sbjct: 192 SSDDSDVEAITH-LLLDHGADVNVRGERGKT------------PLILAVEKKHLGLVQRL 238
Query: 472 LESFPVAIHDINSEKKNIVLLAVENRQPHVYQLLLK 507
LE + I+D +S+ K +LLAVE + + +LL K
Sbjct: 239 LEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCK 274
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 21/109 (19%)
Query: 44 SGGTALHIAVSDGQEEIVEDLVR-----IIKEKQQLEALTIGDERGSTPLHIAAGLGNVS 98
G T LH AV +E+IVE L+R ++++K G+TP +AA G+V
Sbjct: 38 GGWTPLHNAVQMSREDIVELLLRHGADPVLRKKN-----------GATPFLLAAIAGSVK 86
Query: 99 MCKCIAT--ADRKLIGERNHENETPFFLAALHGHKDAFLCLHCLCASVD 145
+ K + AD + E + T F AA++G A L+ A+V+
Sbjct: 87 LLKLFLSKGAD---VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVN 132
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 56/121 (46%), Gaps = 16/121 (13%)
Query: 45 GGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCIA 104
G T LH A +G +E+V+ L+ + + D G TPLH AA G+ + K +
Sbjct: 37 GRTPLHHAAENGHKEVVKLLI------SKGADVNAKDSDGRTPLHHAAENGHKEVVKLLI 90
Query: 105 T--ADRKLIGERNHENETPFFLAALHGHKDAFLCLHCLCASVDDGYTYSRRNDGETILHC 162
+ AD + ++ + TP AA +GHK+ L A V+ + +DG T L
Sbjct: 91 SKGAD---VNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVN-----TSDSDGRTPLDL 142
Query: 163 A 163
A
Sbjct: 143 A 143
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 13/96 (13%)
Query: 412 SLTDHNVVADTHKLSRNNGKNSEDRNEGGKTGSTIPDMAKRETPILIAAKNGITEIVEKI 471
S D +V A TH L ++G + R E GKT P+++A + +V+++
Sbjct: 212 SSDDSDVEAITH-LLLDHGADVNVRGERGKT------------PLILAVEKKHLGLVQRL 258
Query: 472 LESFPVAIHDINSEKKNIVLLAVENRQPHVYQLLLK 507
LE + I+D +S+ K +LLAVE + + +LL K
Sbjct: 259 LEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCK 294
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 21/109 (19%)
Query: 44 SGGTALHIAVSDGQEEIVEDLVR-----IIKEKQQLEALTIGDERGSTPLHIAAGLGNVS 98
G T LH AV +E+IVE L+R ++++K G+TP +AA G+V
Sbjct: 58 GGWTPLHNAVQMSREDIVELLLRHGADPVLRKKN-----------GATPFILAAIAGSVK 106
Query: 99 MCKCIAT--ADRKLIGERNHENETPFFLAALHGHKDAFLCLHCLCASVD 145
+ K + AD + E + T F AA++G A L+ A+V+
Sbjct: 107 LLKLFLSKGAD---VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVN 152
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 77 LTIGDERGSTPLHIAAGLGNVSMCKCIATADRKLIGERNHENETPFFLAALHGHKD 132
L GD+ G +PLH A G ++ + + + I N ++TP LAA HGH+D
Sbjct: 27 LNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR-INVMNRGDDTPLHLAASHGHRD 81
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 77 LTIGDERGSTPLHIAAGLGNVSMCKCIATADRKLIGERNHENETPFFLAALHGHKD 132
L GD+ G +PLH A G ++ + + + I N ++TP LAA HGH+D
Sbjct: 32 LNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR-INVMNRGDDTPLHLAASHGHRD 86
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 23/155 (14%)
Query: 47 TALHIAVSDGQEEIVEDLVRI---IKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCI 103
TALH A S G EIVE L+++ + +K D+ G +PLHIAA G + K +
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVNDK---------DDAGWSPLHIAASAGRDEIVKAL 92
Query: 104 ATADRKLIGERNHENETPF-FLAALHGHKDAFLCLHCLCASVDDGYTYSRRNDGE-TILH 161
+ + N TP + A+ + H+ A + L + G ++ E T +H
Sbjct: 93 LGKGAQ-VNAVNQNGCTPLHYAASKNRHEIAVMLL-------EGGANPDAKDHYEATAMH 144
Query: 162 CAISGDYFDLAFQIIHLYEKLVNSVNEKGVSPLHV 196
A + + I+ Y+ N + +G +PLH+
Sbjct: 145 RAAAKGNLKM-IHILLYYKASTNIQDTEGNTPLHL 178
Score = 32.3 bits (72), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 6/49 (12%)
Query: 44 SGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAA 92
+G + LHIA S G++EIV+ L + + Q+ A+ ++ G TPLH AA
Sbjct: 72 AGWSPLHIAASAGRDEIVKAL---LGKGAQVNAV---NQNGCTPLHYAA 114
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 6/95 (6%)
Query: 106 ADRKLIGERNHENETPFFLAALHGHKDAFLCLHCLCASVDDGYTYSRRNDGETILHCAIS 165
AD+ L + ++ T A GH + L L V+D + + G + LH A S
Sbjct: 28 ADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND-----KDDAGWSPLHIAAS 82
Query: 166 GDYFDLAFQIIHLYEKLVNSVNEKGVSPLHVLATK 200
++ ++ + VN+VN+ G +PLH A+K
Sbjct: 83 AGRDEIVKALLGKGAQ-VNAVNQNGCTPLHYAASK 116
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 37.0 bits (84), Expect = 0.046, Method: Composition-based stats.
Identities = 39/123 (31%), Positives = 51/123 (41%), Gaps = 8/123 (6%)
Query: 45 GGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCIA 104
G T LHIAV G V LV + +Q L I + TPLH+A S+ + +
Sbjct: 9 GDTPLHIAVVQGNLPAVHRLVNLF--QQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLV 66
Query: 105 TADRKLIGERNHENETPFFLAALHGHKDAFLCLHCLCASVDDGY--TYSRRNDGETILHC 162
TA + H +T LA H CL L S G +R DG T LH
Sbjct: 67 TAGASPMALDRH-GQTAAHLACEHRSPT---CLRALLDSAAPGTLDLEARNYDGLTALHV 122
Query: 163 AIS 165
A++
Sbjct: 123 AVN 125
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 23/155 (14%)
Query: 47 TALHIAVSDGQEEIVEDLVRI---IKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCI 103
TALH A S G EIVE L+++ + +K D+ G +PLHIAA G + K +
Sbjct: 43 TALHWACSAGHTEIVEFLLQLGVPVNDK---------DDAGWSPLHIAASAGRDEIVKAL 93
Query: 104 ATADRKLIGERNHENETPF-FLAALHGHKDAFLCLHCLCASVDDGYTYSRRNDGE-TILH 161
+ + N TP + A+ + H+ A + L + G ++ E T +H
Sbjct: 94 LGKGAQ-VNAVNQNGCTPLHYAASKNRHEIAVMLL-------EGGANPDAKDHYEATAMH 145
Query: 162 CAISGDYFDLAFQIIHLYEKLVNSVNEKGVSPLHV 196
A + + I+ Y+ N + +G +PLH+
Sbjct: 146 RAAAKGNLKM-IHILLYYKASTNIQDTEGNTPLHL 179
Score = 32.3 bits (72), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 6/49 (12%)
Query: 44 SGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAA 92
+G + LHIA S G++EIV+ L + + Q+ A+ ++ G TPLH AA
Sbjct: 73 AGWSPLHIAASAGRDEIVKAL---LGKGAQVNAV---NQNGCTPLHYAA 115
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 6/95 (6%)
Query: 106 ADRKLIGERNHENETPFFLAALHGHKDAFLCLHCLCASVDDGYTYSRRNDGETILHCAIS 165
AD+ L + ++ T A GH + L L V+D + + G + LH A S
Sbjct: 29 ADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND-----KDDAGWSPLHIAAS 83
Query: 166 GDYFDLAFQIIHLYEKLVNSVNEKGVSPLHVLATK 200
++ ++ + VN+VN+ G +PLH A+K
Sbjct: 84 AGRDEIVKALLGKGAQ-VNAVNQNGCTPLHYAASK 117
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 36.6 bits (83), Expect = 0.048, Method: Composition-based stats.
Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 7/104 (6%)
Query: 42 TRSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCK 101
++ G T LH A +G E V+ +++ + + A + + G+TPLH+AA G+ + K
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVK---KLLSKGADVNARS---KDGNTPLHLAAKNGHAEIVK 59
Query: 102 CIATADRKLIGERNHENETPFFLAALHGHKDAFLCLHCLCASVD 145
+ A + R+ + TP LA +GH + L A V+
Sbjct: 60 LL-LAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVN 102
Score = 35.4 bits (80), Expect = 0.13, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Query: 80 GDERGSTPLHIAAGLGNVSMCKCIATADRKLIGERNHENETPFFLAALHGHKDAFLCLHC 139
G + G+TPLH AA G+ K + + + R+ + TP LAA +GH + L
Sbjct: 5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLA 63
Query: 140 LCASVDDGYTYSRRNDGETILHCA 163
A V+ +R DG T H A
Sbjct: 64 KGADVN-----ARSKDGNTPEHLA 82
Score = 31.6 bits (70), Expect = 1.8, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 11/87 (12%)
Query: 454 TPILIAAKNGITEIVEKILESFPVAIHDINSEKKN---IVLLAVENRQPHVYQLLLKTTI 510
TP+ AAKNG E V+K+L D+N+ K+ + LA +N + +LLL
Sbjct: 11 TPLHNAAKNGHAEEVKKLLSKGA----DVNARSKDGNTPLHLAAKNGHAEIVKLLLA--- 63
Query: 511 MKDSVFRKVDDQGNSALHLAATLGDHK 537
K + GN+ HLA G H+
Sbjct: 64 -KGADVNARSKDGNTPEHLAKKNGHHE 89
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 53/121 (43%), Gaps = 16/121 (13%)
Query: 45 GGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCIA 104
G T LH A +G +EIV+ L+ + D G TPLH AA G+ + K +
Sbjct: 37 GRTPLHYAAENGHKEIVKLLLSKGADP------NAKDSDGRTPLHYAAENGHKEIVKLLL 90
Query: 105 T--ADRKLIGERNHENETPFFLAALHGHKDAFLCLHCLCASVDDGYTYSRRNDGETILHC 162
+ AD ++ + TP AA +GHK+ L L D + S DG T L
Sbjct: 91 SKGADPNA---KDSDGRTPLHYAAENGHKEIVKLL--LSKGADPNTSDS---DGRTPLDL 142
Query: 163 A 163
A
Sbjct: 143 A 143
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 53/120 (44%), Gaps = 16/120 (13%)
Query: 46 GTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCIAT 105
G L A +G ++ V+DL+ + D G TPLH AA G+ + K + +
Sbjct: 5 GKRLIEAAENGNKDRVKDLL------ENGADPNASDSDGRTPLHYAAENGHKEIVKLLLS 58
Query: 106 --ADRKLIGERNHENETPFFLAALHGHKDAFLCLHCLCASVDDGYTYSRRNDGETILHCA 163
AD ++ + TP AA +GHK+ L L D ++ +DG T LH A
Sbjct: 59 KGADPNA---KDSDGRTPLHYAAENGHKEIVKLL--LSKGAD---PNAKDSDGRTPLHYA 110
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 11/95 (11%)
Query: 45 GGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCIA 104
G T LH A +G +EIV+ L+ + D G TPLH AA G+ + K +
Sbjct: 70 GRTPLHYAAENGHKEIVKLLLSKGADP------NAKDSDGRTPLHYAAENGHKEIVKLLL 123
Query: 105 T--ADRKLIGERNHENETPFFLAALHGHKDAFLCL 137
+ AD + + TP LA HG+++ L
Sbjct: 124 SKGADPNT---SDSDGRTPLDLAREHGNEEIVKLL 155
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 454 TPILIAAKNGITEIVEKILESFPVAIHDINSEKKNIVLLAVENRQPHVYQLLLKTTIMKD 513
TP+ AA+NG EIV K+L S + +S+ + + A EN + +LLL K
Sbjct: 39 TPLHYAAENGHKEIV-KLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLS----KG 93
Query: 514 SVFRKVDDQGNSALHLAATLGDHK 537
+ D G + LH AA G HK
Sbjct: 94 ADPNAKDSDGRTPLHYAAENG-HK 116
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 36.6 bits (83), Expect = 0.053, Method: Composition-based stats.
Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 11/89 (12%)
Query: 44 SGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCI 103
+G T LH+A G EIVE L +K ++A D G TPLH+AA G++ + + +
Sbjct: 46 TGTTPLHLAAYSGHLEIVEVL---LKHGADVDA---SDVFGYTPLHLAAYWGHLEIVEVL 99
Query: 104 AT--ADRKLIGERNHENETPFFLAALHGH 130
AD + + + TP LAA G+
Sbjct: 100 LKNGAD---VNAMDSDGMTPLHLAAKWGY 125
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Query: 45 GGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCI 103
G T LH+A G EIVE L +K + A+ D G TPLH+AA G + + + +
Sbjct: 80 GYTPLHLAAYWGHLEIVEVL---LKNGADVNAM---DSDGMTPLHLAAKWGYLEIVEVL 132
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 10/94 (10%)
Query: 80 GDERGSTPLHIAAGLGNVSMCKCIAT--ADRKLIGERNHENETPFFLAALHGHKDAFLCL 137
D G+TPLH+AA G++ + + + AD + + TP LAA GH + L
Sbjct: 43 ADNTGTTPLHLAAYSGHLEIVEVLLKHGAD---VDASDVFGYTPLHLAAYWGHLEIVEVL 99
Query: 138 HCLCASVDDGYTYSRRNDGETILHCAISGDYFDL 171
A V+ + +DG T LH A Y ++
Sbjct: 100 LKNGADVN-----AMDSDGMTPLHLAAKWGYLEI 128
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 36.6 bits (83), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 64/153 (41%), Gaps = 19/153 (12%)
Query: 47 TALHIAVSDGQEEIVEDLVRI---IKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCI 103
TALH A S G EIVE L+++ + +K D+ G +PLHIAA G + K +
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVNDK---------DDAGWSPLHIAASAGRDEIVKAL 92
Query: 104 ATADRKLIGERNHENETPFFLAALHGHKDAFLCLHCLCASVDDGYTYSRRNDGETILHCA 163
+ N TP AA + + L A+ D Y T +H A
Sbjct: 93 LVKGAH-VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYD-----ATAMHRA 146
Query: 164 ISGDYFDLAFQIIHLYEKLVNSVNEKGVSPLHV 196
+ + I+ Y+ N + +G +PLH+
Sbjct: 147 AAKGNLKM-VHILLFYKASTNIQDTEGNTPLHL 178
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 6/95 (6%)
Query: 106 ADRKLIGERNHENETPFFLAALHGHKDAFLCLHCLCASVDDGYTYSRRNDGETILHCAIS 165
AD+ L + ++ T A GH + L L V+D + + G + LH A S
Sbjct: 28 ADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND-----KDDAGWSPLHIAAS 82
Query: 166 GDYFDLAFQIIHLYEKLVNSVNEKGVSPLHVLATK 200
++ ++ + VN+VN+ G +PLH A+K
Sbjct: 83 AGRDEIVKALL-VKGAHVNAVNQNGCTPLHYAASK 116
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 6/49 (12%)
Query: 44 SGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAA 92
+G + LHIA S G++EIV+ L ++K + ++ G TPLH AA
Sbjct: 72 AGWSPLHIAASAGRDEIVKAL--LVKGAH----VNAVNQNGCTPLHYAA 114
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 36.2 bits (82), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 64/153 (41%), Gaps = 19/153 (12%)
Query: 47 TALHIAVSDGQEEIVEDLVRI---IKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCI 103
TALH A S G EIVE L+++ + +K D+ G +PLHIAA G + K +
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVNDK---------DDAGWSPLHIAASAGXDEIVKAL 92
Query: 104 ATADRKLIGERNHENETPFFLAALHGHKDAFLCLHCLCASVDDGYTYSRRNDGETILHCA 163
+ N TP AA + + L A+ D Y T +H A
Sbjct: 93 LVKGAH-VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDA-----TAMHRA 146
Query: 164 ISGDYFDLAFQIIHLYEKLVNSVNEKGVSPLHV 196
+ + I+ Y+ N + +G +PLH+
Sbjct: 147 AAKGNLKM-VHILLFYKASTNIQDTEGNTPLHL 178
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 6/95 (6%)
Query: 106 ADRKLIGERNHENETPFFLAALHGHKDAFLCLHCLCASVDDGYTYSRRNDGETILHCAIS 165
AD+ L + ++ T A GH + L L V+D + + G + LH A S
Sbjct: 28 ADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND-----KDDAGWSPLHIAAS 82
Query: 166 GDYFDLAFQIIHLYEKLVNSVNEKGVSPLHVLATK 200
++ ++ + VN+VN+ G +PLH A+K
Sbjct: 83 AGXDEIVKALL-VKGAHVNAVNQNGCTPLHYAASK 116
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 36.2 bits (82), Expect = 0.072, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 81 DERGSTPLHIAAGLGNVSMCKCIATADRKLIGERNHENETPFFLAALHGH 130
DE G TPLH+AA LG++ + + + + E N TP LAA+ GH
Sbjct: 44 DEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNF-GITPLHLAAIRGH 92
Score = 30.0 bits (66), Expect = 4.6, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 41 ITRSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMC 100
+ G T LH+A G EIVE L++ + + D G TPLH+AA G++ +
Sbjct: 43 LDEDGLTPLHLAAQLGHLEIVEVLLKYGAD------VNAEDNFGITPLHLAAIRGHLEIV 96
Query: 101 KCI 103
+ +
Sbjct: 97 EVL 99
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 36.2 bits (82), Expect = 0.077, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 11/88 (12%)
Query: 45 GGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCIA 104
G T LH+A G EIVE L +K + A D G TPLH+AA G++ + + +
Sbjct: 47 GSTPLHLAAWIGHPEIVEVL---LKHGADVNAR---DTDGWTPLHLAADNGHLEIVEVLL 100
Query: 105 T--ADRKLIGERNHENETPFFLAALHGH 130
AD + ++ TP LAA GH
Sbjct: 101 KYGAD---VNAQDAYGLTPLHLAADRGH 125
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 5/52 (9%)
Query: 81 DERGSTPLHIAAGLGNVSMCKCIAT--ADRKLIGERNHENETPFFLAALHGH 130
D++GSTPLH+AA +G+ + + + AD + R+ + TP LAA +GH
Sbjct: 44 DDQGSTPLHLAAWIGHPEIVEVLLKHGAD---VNARDTDGWTPLHLAADNGH 92
Score = 35.0 bits (79), Expect = 0.17, Method: Composition-based stats.
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
Query: 103 IATADRKLIGERNHENETPFFLAALHGHKDAFLCLHCLCASVDDGYTYSRRNDGETILHC 162
I A+ + + + TP LAA GH + L A V+ +R DG T LH
Sbjct: 32 ILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVN-----ARDTDGWTPLHL 86
Query: 163 AISGDYFDLAFQIIHLYEKLVNSVNEKGVSPLHVLATK 200
A + ++ +++ Y VN+ + G++PLH+ A +
Sbjct: 87 AADNGHLEIV-EVLLKYGADVNAQDAYGLTPLHLAADR 123
Score = 33.9 bits (76), Expect = 0.39, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Query: 45 GGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCI 103
G T LH+A +G EIVE L++ + + D G TPLH+AA G++ + + +
Sbjct: 80 GWTPLHLAADNGHLEIVEVLLKYGAD------VNAQDAYGLTPLHLAADRGHLEIVEVL 132
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 35.8 bits (81), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 45/107 (42%), Gaps = 9/107 (8%)
Query: 43 RSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKC 102
R+G TALH+A + + + + L+ + I D G TPLH A + +
Sbjct: 55 RTGATALHLAAAYSRSDAAKRLLEASADAN------IQDNMGRTPLHAAVSADAQGVFQI 108
Query: 103 IATADRKLIGERNHENETPFFLA---ALHGHKDAFLCLHCLCASVDD 146
+ + R H+ TP LA A+ G + + H +VDD
Sbjct: 109 LIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDD 155
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 34.7 bits (78), Expect = 0.18, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Query: 44 SGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCI 103
+G T LH+A G EIVE L +K + A D G TPLH+AA +G++ + + +
Sbjct: 46 AGVTPLHLAAKRGHLEIVEVL---LKHGADVNA---SDSWGRTPLHLAATVGHLEIVEVL 99
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 34.7 bits (78), Expect = 0.23, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Query: 43 RSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKC 102
R G T LH+A EIVE L +K + A D GSTPLH+AA G++ + +
Sbjct: 45 RKGNTPLHLAADYDHLEIVEVL---LKHGADVNA---HDNDGSTPLHLAALFGHLEIVEV 98
Query: 103 I 103
+
Sbjct: 99 L 99
Score = 33.5 bits (75), Expect = 0.45, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
Query: 81 DERGSTPLHIAAGLGNVSMCKCIAT--ADRKLIGERNHENETPFFLAALHGH 130
D +G+TPLH+AA ++ + + + AD + +++ TP LAAL GH
Sbjct: 44 DRKGNTPLHLAADYDHLEIVEVLLKHGAD---VNAHDNDGSTPLHLAALFGH 92
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 34.3 bits (77), Expect = 0.28, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 11/91 (12%)
Query: 45 GGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCIA 104
G T L +A E +VEDL+ + + D G T LH AA + N +
Sbjct: 118 GTTPLILAARLAIEGMVEDLITADAD------INAADNSGKTALHWAAAVNNTEAVNILL 171
Query: 105 T--ADRKLIGERNHENETPFFLAALHGHKDA 133
A+R ++ ++ETP FLAA G +A
Sbjct: 172 MHHANRD---AQDDKDETPLFLAAREGSYEA 199
Score = 29.3 bits (64), Expect = 8.9, Method: Composition-based stats.
Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 13/133 (9%)
Query: 81 DERGSTPLHIAAGLGNVSMCKCIATADRKLIGERNHENETPFFLA---ALHGHKDAFLCL 137
D G TPLH A + + + + + R H+ TP LA A+ G + +
Sbjct: 81 DNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITA 140
Query: 138 HCLCASVDDGYTYSRRNDGETILHCAISGDYFDLAFQIIHLYEKLVNSVNEKGVSPLHVL 197
+ D N G+T LH A + + + A I+ ++ ++ ++K +PL L
Sbjct: 141 DADINAAD--------NSGKTALHWAAAVNNTE-AVNILLMHHANRDAQDDKDETPL-FL 190
Query: 198 ATKPNAFRSGSHL 210
A + ++ + L
Sbjct: 191 AAREGSYEASKAL 203
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 33.9 bits (76), Expect = 0.39, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Query: 44 SGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCI 103
+G T LH+A G EIVE L +K + A D G TPLH+AA +G++ + + +
Sbjct: 46 AGVTPLHLAAKRGHLEIVEVL---LKHGADVNA---SDIWGRTPLHLAATVGHLEIVEVL 99
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 33.1 bits (74), Expect = 0.53, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Query: 44 SGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCI 103
+G T LH+A G EIVE L +K + A I G TPLH+AA +G++ + + +
Sbjct: 46 AGVTPLHLAAKRGHLEIVEVL---LKHGADVNARDIW---GRTPLHLAATVGHLEIVEVL 99
Score = 30.8 bits (68), Expect = 3.1, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 81 DERGSTPLHIAAGLGNVSMCKCIAT--ADRKLIGERNHENETPFFLAALHGH 130
D+ G TPLH+AA G++ + + + AD + R+ TP LAA GH
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLKHGAD---VNARDIWGRTPLHLAATVGH 92
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 33.1 bits (74), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 6/109 (5%)
Query: 86 TPLHIAAGLGNVSMCKCIATADRKLIGERNHENETPFFLAALHGHKDAFLCLHCLCASVD 145
+PLH AA G+V +C + A I + + TP AA + H +A L A VD
Sbjct: 13 SPLHAAAEAGHVDICHMLVQAGAN-IDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVD 71
Query: 146 DGYTYSRRNDGETILHCAISGDYFDLAFQIIHLYEKLVNSVNEKGVSPL 194
+ +G T LH A ++++ ++ + VN ++ G +P+
Sbjct: 72 -----PKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPM 115
Score = 33.1 bits (74), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 8/119 (6%)
Query: 81 DERGSTPLHIAAGLGNVSMCKCIATADRKLIGERNHENETPFFLAALHGHKDAFLCLHCL 140
D GST LH+AA G+ + + + + + + ++ TP A + H D L
Sbjct: 74 DAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLL--- 130
Query: 141 CASVDDGYTYSRRNDGETI-LHCAISGDYFDLAFQIIHLYEKLVNSVNEKGVSPLHVLA 198
+ G + R++ E I LH A D+A +I+ + +++VN G SPLH+ A
Sbjct: 131 ---LSKGSDINIRDNEENICLHWAAFSGCVDIA-EILLAAKCDLHAVNIHGDSPLHIAA 185
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 41 ITRSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMC 100
+T G TALH+AV E ++ L+ + L+ + ++ G T LH+AA LG S
Sbjct: 5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLD---LQNDLGQTALHLAAILGEASTV 61
Query: 101 -KCIATADRKLIGERN 115
K A L+ ER
Sbjct: 62 EKLYAAGAGVLVAERG 77
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 41 ITRSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMC 100
+T G TALH+AV E ++ L+ + L+ + ++ G T LH+AA LG S
Sbjct: 5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLD---LQNDLGQTALHLAAILGEASTV 61
Query: 101 -KCIATADRKLIGERN 115
K A L+ ER
Sbjct: 62 EKLYAAGAGVLVAERG 77
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 32.3 bits (72), Expect = 0.93, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 6/59 (10%)
Query: 45 GGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCI 103
G T L++A + G EIVE L++ + ++A+ G TPLH+AA +G++ + + +
Sbjct: 47 GLTPLYLATAHGHLEIVEVLLKNGADVNAVDAI------GFTPLHLAAFIGHLEIAEVL 99
>pdb|4HE8|M Chain M, Crystal Structure Of The Membrane Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|4HE8|G Chain G, Crystal Structure Of The Membrane Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|4HEA|M Chain M, Crystal Structure Of The Entire Respiratory Complex I From
Thermus Thermophilus
pdb|4HEA|U Chain U, Crystal Structure Of The Entire Respiratory Complex I From
Thermus Thermophilus
Length = 469
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 620 TVPGGVKEDSGEPTLENQPAFNVFAISSLVALCFSVTAVVMFLAILTSRYQEGDF 674
T PGGV P L + F + L AL F A+ +FL L +R EG F
Sbjct: 42 THPGGVAHAFQAPLLPGAGVYWAFGLDGLSALFFLTIALTVFLGALVAR-VEGRF 95
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 12/44 (27%)
Query: 430 GKNSEDRNEGGKTGSTIPDMAKRETPILIAAKNGITEIVEKILE 473
G N DRN G ETP+++A+K G +EIV+K+LE
Sbjct: 124 GANVNDRNLEG------------ETPLIVASKYGRSEIVKKLLE 155
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Query: 43 RSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIA 91
R G TALH+A + E+VE LV + + + + DERG T L +A
Sbjct: 109 RGGLTALHMAAGYVRPEVVEALVELGAD------IEVEDERGLTALELA 151
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 30.4 bits (67), Expect = 4.0, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
Query: 43 RSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKC 102
+ G T LH+A + EIVE L++ + ++A+ G TPLH+ A G++ + +
Sbjct: 45 KVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAI------GETPLHLVAMYGHLEIVEV 98
Query: 103 I 103
+
Sbjct: 99 L 99
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Query: 43 RSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIA 91
R G TALH+A + E+VE LV + + + + DERG T L +A
Sbjct: 108 RGGLTALHMAAGYVRPEVVEALVELGAD------IEVEDERGLTALELA 150
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 11/84 (13%)
Query: 43 RSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKC 102
+ G LH A S G E+ E LV+ + + D TPLH AA G +CK
Sbjct: 73 KGGLVPLHNACSYGHYEVAELLVK------HGAVVNVADLWKFTPLHEAAAKGKYEICKL 126
Query: 103 IAT--ADRKLIGERNHENETPFFL 124
+ AD ++N + TP L
Sbjct: 127 LLQHGADPT---KKNRDGNTPLDL 147
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 11/84 (13%)
Query: 43 RSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKC 102
+ G LH A S G E+ E LV+ + + D TPLH AA G +CK
Sbjct: 77 KGGLVPLHNACSYGHYEVAELLVK------HGAVVNVADLWKFTPLHEAAAKGKYEICKL 130
Query: 103 IAT--ADRKLIGERNHENETPFFL 124
+ AD ++N + TP L
Sbjct: 131 LLQHGADPT---KKNRDGNTPLDL 151
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 29.3 bits (64), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 52/111 (46%), Gaps = 5/111 (4%)
Query: 40 KITRSGGTALHI-AVSDGQEEIVEDLVRIIK-EKQQLEALTIGDE---RGSTPLHIAAGL 94
++ R+G TAL I A ++G++++ + + K K + D +G T LH AA +
Sbjct: 230 ELDRNGXTALXIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQV 289
Query: 95 GNVSMCKCIATADRKLIGERNHENETPFFLAALHGHKDAFLCLHCLCASVD 145
N + K + +++ + +TP LAA G + L ASV+
Sbjct: 290 SNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGASVE 340
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 29.3 bits (64), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 11/84 (13%)
Query: 43 RSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKC 102
+ G LH A S G E+ E LV+ + + D TPLH AA G +CK
Sbjct: 75 KGGLVPLHNACSYGHYEVAELLVK------HGAVVNVADLWKFTPLHEAAAKGKYEICKL 128
Query: 103 IAT--ADRKLIGERNHENETPFFL 124
+ AD ++N + TP L
Sbjct: 129 LLQHGADPT---KKNRDGNTPLDL 149
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,635,015
Number of Sequences: 62578
Number of extensions: 957148
Number of successful extensions: 2625
Number of sequences better than 100.0: 82
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 69
Number of HSP's that attempted gapping in prelim test: 2207
Number of HSP's gapped (non-prelim): 354
length of query: 759
length of database: 14,973,337
effective HSP length: 106
effective length of query: 653
effective length of database: 8,340,069
effective search space: 5446065057
effective search space used: 5446065057
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)