Query 004365
Match_columns 759
No_of_seqs 584 out of 3954
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 22:55:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004365.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004365hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n11_A Ankyrin; clathrin, BAND 100.0 3.8E-55 1.3E-59 484.1 32.6 231 2-268 2-236 (437)
2 1n11_A Ankyrin; clathrin, BAND 100.0 1.4E-52 4.6E-57 463.6 29.1 353 2-537 35-391 (437)
3 4g8k_A 2-5A-dependent ribonucl 100.0 1.9E-44 6.3E-49 383.9 29.9 182 11-201 26-213 (337)
4 1wdy_A 2-5A-dependent ribonucl 100.0 3.1E-43 1.1E-47 364.7 31.8 268 11-521 6-284 (285)
5 3utm_A Tankyrase-1; tankyrase, 100.0 1.7E-42 5.7E-47 370.8 30.7 278 10-532 24-322 (351)
6 2xai_A ASB-9, ankyrin repeat a 100.0 2.7E-42 9.1E-47 353.0 23.9 246 44-536 2-251 (261)
7 2fo1_E LIN-12 protein; beta-ba 100.0 1.5E-43 5E-48 381.8 14.0 292 10-538 37-361 (373)
8 3utm_A Tankyrase-1; tankyrase, 100.0 6.1E-42 2.1E-46 366.4 25.1 315 35-592 14-331 (351)
9 1wdy_A 2-5A-dependent ribonucl 100.0 1.9E-41 6.4E-46 351.2 27.8 249 43-538 3-268 (285)
10 3d9h_A CDNA FLJ77766, highly s 100.0 2E-41 6.9E-46 351.0 24.6 192 11-223 16-216 (285)
11 3d9h_A CDNA FLJ77766, highly s 100.0 2.5E-41 8.6E-46 350.3 23.6 250 41-533 11-265 (285)
12 3ljn_A Hypothetical protein; a 100.0 5.5E-42 1.9E-46 369.0 16.7 269 33-536 8-302 (364)
13 1oy3_D Transcription factor in 100.0 6.6E-41 2.3E-45 346.8 21.2 261 38-535 2-270 (282)
14 1yyh_A HN1;, notch 1, ankyrin 100.0 1.1E-40 3.8E-45 339.3 21.4 167 37-223 2-183 (253)
15 1yyh_A HN1;, notch 1, ankyrin 100.0 9.1E-41 3.1E-45 340.0 19.0 224 76-538 2-238 (253)
16 3b7b_A Euchromatic histone-lys 100.0 2.8E-39 9.4E-44 325.6 26.0 221 75-535 2-222 (237)
17 4g8k_A 2-5A-dependent ribonucl 100.0 2.6E-39 8.8E-44 344.2 25.4 283 42-538 22-316 (337)
18 1k1a_A B-cell lymphoma 3-encod 100.0 1.3E-39 4.4E-44 328.8 21.9 173 39-223 3-176 (241)
19 2xai_A ASB-9, ankyrin repeat a 100.0 2E-39 7E-44 331.6 23.4 190 11-224 4-193 (261)
20 2fo1_E LIN-12 protein; beta-ba 100.0 2.1E-40 7.3E-45 357.1 16.9 180 11-202 95-291 (373)
21 3ljn_A Hypothetical protein; a 100.0 1.2E-39 4.2E-44 350.7 21.4 190 11-224 21-238 (364)
22 3b7b_A Euchromatic histone-lys 100.0 8E-39 2.7E-43 322.2 25.1 168 36-223 2-170 (237)
23 4b93_B Ankyrin repeat domain-c 100.0 2.4E-39 8.1E-44 331.5 17.5 171 40-224 6-179 (269)
24 1s70_B 130 kDa myosin-binding 100.0 2.1E-39 7.3E-44 338.7 17.0 265 16-533 4-275 (299)
25 3aji_A 26S proteasome non-ATPa 100.0 3.1E-38 1.1E-42 316.5 23.0 163 42-223 3-165 (231)
26 1k1a_A B-cell lymphoma 3-encod 100.0 1.4E-38 4.7E-43 321.3 20.2 223 77-538 2-231 (241)
27 2dzn_A Probable 26S proteasome 100.0 2.8E-37 9.7E-42 308.8 25.1 157 45-220 2-163 (228)
28 2dzn_A Probable 26S proteasome 100.0 1.9E-37 6.7E-42 310.0 22.1 215 84-534 2-219 (228)
29 3eu9_A Huntingtin-interacting 100.0 4.1E-37 1.4E-41 310.0 24.1 153 38-202 2-154 (240)
30 4b93_B Ankyrin repeat domain-c 100.0 2.5E-38 8.7E-43 323.8 14.7 218 78-535 5-230 (269)
31 3kea_A K1L; tropism, ANK repea 100.0 7.1E-38 2.4E-42 324.2 18.2 180 17-223 6-187 (285)
32 1sw6_A Regulatory protein SWI6 100.0 1.5E-38 5.2E-43 336.0 11.0 181 20-220 29-228 (327)
33 3aji_A 26S proteasome non-ATPa 100.0 5.4E-36 1.8E-40 300.2 25.8 224 10-268 6-229 (231)
34 2f8y_A Notch homolog 1, transl 100.0 5.1E-36 1.7E-40 298.7 20.0 134 56-202 2-137 (223)
35 3kea_A K1L; tropism, ANK repea 100.0 6E-36 2.1E-40 309.7 20.0 139 58-220 13-152 (285)
36 1oy3_D Transcription factor in 100.0 3.4E-35 1.2E-39 303.8 21.6 209 10-253 9-267 (282)
37 2f8y_A Notch homolog 1, transl 100.0 4.4E-35 1.5E-39 291.9 20.7 180 23-223 4-184 (223)
38 1ikn_D Protein (I-kappa-B-alph 100.0 7.7E-36 2.6E-40 300.2 11.8 82 451-535 150-231 (236)
39 1s70_B 130 kDa myosin-binding 100.0 2.2E-34 7.5E-39 300.6 22.5 145 50-201 3-150 (299)
40 3eu9_A Huntingtin-interacting 100.0 6.6E-34 2.2E-38 286.5 25.0 191 11-223 10-203 (240)
41 4gpm_A Engineered protein OR26 100.0 4.1E-34 1.4E-38 270.0 20.3 159 47-225 6-164 (169)
42 1ikn_D Protein (I-kappa-B-alph 100.0 1.3E-35 4.6E-40 298.5 10.3 175 39-224 2-178 (236)
43 1sw6_A Regulatory protein SWI6 100.0 1.1E-35 3.8E-40 314.0 9.8 161 1-179 39-228 (327)
44 2rfa_A Transient receptor pote 100.0 9.5E-34 3.2E-38 284.1 22.5 153 44-202 2-166 (232)
45 4gpm_A Engineered protein OR26 100.0 1.5E-33 5.1E-38 266.1 19.9 162 9-185 3-164 (169)
46 3hra_A Ankyrin repeat family p 100.0 2.5E-33 8.5E-38 274.3 22.1 191 10-220 5-201 (201)
47 2rfa_A Transient receptor pote 100.0 2E-33 6.9E-38 281.7 21.2 201 11-227 4-227 (232)
48 3hra_A Ankyrin repeat family p 100.0 5.3E-33 1.8E-37 272.0 22.7 149 42-201 2-151 (201)
49 2pnn_A Transient receptor pote 100.0 4E-34 1.4E-38 294.4 15.2 161 35-202 3-196 (273)
50 2etb_A Transient receptor pote 100.0 4.8E-33 1.6E-37 283.5 17.5 145 44-200 1-182 (256)
51 2etb_A Transient receptor pote 100.0 1E-32 3.5E-37 281.1 19.0 200 11-225 3-249 (256)
52 2pnn_A Transient receptor pote 100.0 1.6E-32 5.6E-37 282.4 17.4 203 11-227 14-264 (273)
53 3jxi_A Vanilloid receptor-rela 100.0 1.9E-32 6.5E-37 279.8 15.4 199 11-225 6-253 (260)
54 3jxi_A Vanilloid receptor-rela 100.0 9.7E-32 3.3E-36 274.5 14.5 150 42-202 2-188 (260)
55 2rfm_A Putative ankyrin repeat 100.0 4.7E-31 1.6E-35 256.1 18.6 164 37-220 27-190 (192)
56 4hbd_A KN motif and ankyrin re 100.0 1.1E-31 3.6E-36 276.3 13.2 191 12-220 78-273 (276)
57 1ihb_A P18-INK4C(INK6), cyclin 100.0 1.2E-30 4.2E-35 245.6 15.8 159 44-222 4-162 (162)
58 2aja_A Ankyrin repeat family p 100.0 9.3E-33 3.2E-37 294.2 -0.1 179 14-227 69-255 (376)
59 3v31_A Ankyrin repeat family A 100.0 3E-30 1E-34 244.3 17.3 161 44-224 2-162 (167)
60 3v30_A DNA-binding protein rfx 100.0 3.5E-30 1.2E-34 245.2 17.5 169 11-193 3-171 (172)
61 2y1l_E Darpin-8.4; hydrolase-i 100.0 9.4E-30 3.2E-34 241.4 19.4 160 41-220 10-169 (169)
62 3v30_A DNA-binding protein rfx 100.0 3.8E-30 1.3E-34 244.9 16.6 165 45-228 2-166 (172)
63 4hbd_A KN motif and ankyrin re 100.0 2.1E-30 7.3E-35 266.5 15.5 164 43-223 74-243 (276)
64 3f6q_A Integrin-linked protein 100.0 1.1E-29 3.9E-34 243.3 16.0 168 42-228 2-169 (179)
65 2vge_A RELA-associated inhibit 100.0 2.2E-32 7.4E-37 272.8 -3.8 148 40-200 16-166 (229)
66 3twr_A Tankyrase-2; ankyrin re 100.0 1.2E-29 4.2E-34 239.5 14.6 161 41-221 4-164 (165)
67 1awc_B Protein (GA binding pro 100.0 4.8E-29 1.7E-33 232.2 18.4 151 45-216 2-152 (153)
68 1ihb_A P18-INK4C(INK6), cyclin 100.0 3.8E-29 1.3E-33 235.4 17.2 157 9-181 4-161 (162)
69 2vge_A RELA-associated inhibit 100.0 4.7E-31 1.6E-35 263.1 3.7 127 61-197 1-128 (229)
70 2y1l_E Darpin-8.4; hydrolase-i 100.0 1.1E-28 3.8E-33 234.0 19.9 154 11-178 15-168 (169)
71 1bd8_A P19INK4D CDK4/6 inhibit 100.0 6.4E-29 2.2E-33 232.2 17.1 154 45-219 2-155 (156)
72 3v31_A Ankyrin repeat family A 100.0 9.4E-29 3.2E-33 234.0 17.7 156 11-180 4-159 (167)
73 1awc_B Protein (GA binding pro 100.0 1.8E-28 6.3E-33 228.3 18.7 150 11-175 3-152 (153)
74 2rfm_A Putative ankyrin repeat 100.0 1.7E-28 5.7E-33 238.1 17.5 155 11-179 36-190 (192)
75 1bd8_A P19INK4D CDK4/6 inhibit 100.0 2.3E-28 8E-33 228.4 17.8 153 11-178 3-155 (156)
76 3f6q_A Integrin-linked protein 100.0 1.1E-28 3.7E-33 236.5 15.4 166 11-190 6-171 (179)
77 3twr_A Tankyrase-2; ankyrin re 100.0 2.6E-28 8.8E-33 230.5 15.2 155 10-178 8-162 (165)
78 2aja_A Ankyrin repeat family p 100.0 9E-31 3.1E-35 278.9 -3.4 154 44-221 64-223 (376)
79 1ycs_B 53BP2, P53BP2; ankyrin 99.9 3.8E-28 1.3E-32 244.3 11.3 166 42-228 2-170 (239)
80 1ycs_B 53BP2, P53BP2; ankyrin 99.9 3.2E-28 1.1E-32 244.8 7.8 176 11-202 6-193 (239)
81 1d9s_A Cyclin-dependent kinase 99.9 2.3E-27 8E-32 215.9 12.5 132 35-179 2-134 (136)
82 3t8k_A Uncharacterized protein 99.9 5.4E-28 1.9E-32 232.1 7.7 161 10-187 6-184 (186)
83 1bi7_B P16INK4A, MTS1, multipl 99.9 1.4E-27 4.7E-32 223.1 9.7 146 39-198 6-152 (156)
84 3t8k_A Uncharacterized protein 99.9 8.6E-28 2.9E-32 230.7 7.3 160 45-225 6-182 (186)
85 1d9s_A Cyclin-dependent kinase 99.9 1.1E-26 3.7E-31 211.5 12.1 134 74-222 2-136 (136)
86 2jab_A H10-2-G3; HER2, darpin, 99.9 1.1E-25 3.9E-30 204.7 13.8 126 41-178 10-135 (136)
87 1n0r_A 4ANK, 4 ankyrin repeats 99.9 7.3E-25 2.5E-29 196.3 16.8 125 44-181 1-125 (126)
88 3c5r_A BARD-1, BRCA1-associate 99.9 9.8E-26 3.4E-30 205.5 7.9 130 36-178 2-131 (137)
89 1bi7_B P16INK4A, MTS1, multipl 99.9 2.8E-25 9.7E-30 207.4 9.8 143 6-163 8-151 (156)
90 1n0r_A 4ANK, 4 ankyrin repeats 99.9 4E-24 1.4E-28 191.4 16.0 126 83-222 1-126 (126)
91 2jab_A H10-2-G3; HER2, darpin, 99.9 2.2E-24 7.4E-29 196.2 14.1 127 80-220 10-136 (136)
92 3deo_A Signal recognition part 99.9 8.6E-25 3E-29 210.0 10.8 140 42-219 41-181 (183)
93 3ui2_A Signal recognition part 99.9 6.9E-25 2.4E-29 221.0 9.9 146 42-225 42-188 (244)
94 3ui2_A Signal recognition part 99.9 6.1E-26 2.1E-30 228.7 1.1 141 43-200 13-154 (244)
95 3c5r_A BARD-1, BRCA1-associate 99.9 1.9E-24 6.4E-29 196.9 9.6 130 75-219 2-131 (137)
96 3aaa_C Myotrophin, protein V-1 99.9 2.2E-24 7.7E-29 192.4 9.8 114 42-167 4-117 (123)
97 2b0o_E UPLC1; arfgap, structur 99.9 1.8E-23 6E-28 217.0 16.7 139 45-202 151-298 (301)
98 3ehr_A Osteoclast-stimulating 99.9 1.4E-24 4.8E-29 215.6 7.2 138 40-190 68-206 (222)
99 3deo_A Signal recognition part 99.9 7.3E-24 2.5E-28 203.5 10.6 114 80-201 40-154 (183)
100 3aaa_C Myotrophin, protein V-1 99.9 3.9E-23 1.3E-27 184.3 11.6 112 81-199 4-115 (123)
101 2b0o_E UPLC1; arfgap, structur 99.9 3.1E-23 1.1E-27 215.1 11.4 139 11-169 152-299 (301)
102 3ehr_A Osteoclast-stimulating 99.9 3.4E-23 1.2E-27 205.6 8.7 174 41-228 21-204 (222)
103 3jue_A Arfgap with coiled-coil 99.9 2.8E-22 9.5E-27 212.5 14.1 148 42-201 196-348 (368)
104 1n0q_A 3ANK, 3 ankyrin repeats 99.9 6E-22 2.1E-26 166.9 11.9 93 44-143 1-93 (93)
105 1dcq_A PYK2-associated protein 99.9 2.5E-21 8.4E-26 198.5 17.3 129 46-180 131-262 (278)
106 3lvq_E ARF-GAP with SH3 domain 99.9 1.8E-21 6.3E-26 217.0 15.2 136 45-199 132-276 (497)
107 1n0q_A 3ANK, 3 ankyrin repeats 99.8 6E-21 2E-25 160.7 12.6 90 83-178 1-90 (93)
108 3lvq_E ARF-GAP with SH3 domain 99.8 4.4E-21 1.5E-25 213.9 15.2 135 11-165 133-276 (497)
109 1dcq_A PYK2-associated protein 99.8 9.2E-21 3.1E-25 194.2 15.3 126 11-145 131-265 (278)
110 2l6b_A NR1C; ankyrin, consensu 99.8 1.3E-21 4.3E-26 172.1 6.6 107 80-193 5-111 (115)
111 2l6b_A NR1C; ankyrin, consensu 99.8 4E-21 1.4E-25 168.9 8.7 109 40-160 4-112 (115)
112 3jue_A Arfgap with coiled-coil 99.8 2.2E-20 7.6E-25 197.9 13.5 146 11-167 200-348 (368)
113 2zgd_A 3 repeat synthetic anky 99.8 1.6E-18 5.5E-23 150.8 10.9 93 77-175 17-109 (110)
114 2zgd_A 3 repeat synthetic anky 99.8 1.5E-18 5.2E-23 150.9 9.9 94 37-137 16-109 (110)
115 4ev6_A Magnesium transport pro 34.5 40 0.0014 34.1 5.2 22 687-708 281-302 (339)
116 2knc_A Integrin alpha-IIB; tra 33.8 98 0.0034 21.6 5.3 14 712-725 10-23 (54)
117 2iub_A CORA, divalent cation t 32.5 32 0.0011 35.3 4.1 21 687-707 305-325 (363)
118 2l8s_A Integrin alpha-1; trans 32.4 1.3E+02 0.0044 21.0 5.7 16 710-725 5-20 (54)
119 1vry_A Glycine receptor alpha- 32.2 1.1E+02 0.0037 23.2 5.8 41 698-738 16-56 (76)
120 3mkq_B Coatomer subunit alpha; 28.0 2.4E+02 0.0083 25.2 8.5 133 11-181 9-143 (177)
121 1gp8_A Protein (scaffolding pr 25.5 31 0.0011 22.0 1.4 22 8-29 11-32 (40)
122 3rko_J NADH-quinone oxidoreduc 23.8 2.6E+02 0.0088 25.3 7.9 15 693-707 60-74 (184)
123 3rhw_A Avermectin-sensitive gl 20.8 3.7E+02 0.013 26.9 9.6 41 696-736 255-295 (347)
No 1
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=3.8e-55 Score=484.11 Aligned_cols=231 Identities=20% Similarity=0.196 Sum_probs=204.0
Q ss_pred CCcCCcccc----cHHHHHHHHcCCHHHHHHHHhhCcCccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhcccccC
Q 004365 2 ATGIDIDQL----KKDLFKRAMKGEWKEVVKNYEKDERIHKVKITRSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEAL 77 (759)
Q Consensus 2 ~~g~d~~~~----~~~L~~aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~ 77 (759)
+.|++++.. .+|||.||..|+.+.|+.|+.+ +++++..+..|+||||+||..|+.++|++|+++| +++
T Consensus 2 ~~g~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~--g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g------~~~ 73 (437)
T 1n11_A 2 SPGISGGGGGESGLTPLHVASFMGHLPIVKNLLQR--GASPNVSNVKVETPLHMAARAGHTEVAKYLLQNK------AKV 73 (437)
T ss_dssp -------------CCHHHHHHHHTCHHHHHHHHHT--TCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHT------CCS
T ss_pred CCCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHc--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCC------CCC
Confidence 357888764 6799999999999999999988 7889999999999999999999999999999997 789
Q ss_pred ccCCCCCChHHHHHHHcCCHHHHHHHHHcCCcccCCCCCCCCcHHHHHHHCCCHHHHHHHHhcCCCCCCCCccccCCCCC
Q 004365 78 TIGDERGSTPLHIAAGLGNVSMCKCIATADRKLIGERNHENETPFFLAALHGHKDAFLCLHCLCASVDDGYTYSRRNDGE 157 (759)
Q Consensus 78 ~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~d~~g~ 157 (759)
+.+|.+|+||||+||..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|++++++++ ..+..|.
T Consensus 74 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~-----~~~~~g~ 147 (437)
T 1n11_A 74 NAKAKDDQTPLHCAARIGHTNMVKLLLENNAN-PNLATTAGHTPLHIAAREGHVETVLALLEKEASQA-----CMTKKGF 147 (437)
T ss_dssp SCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSC-----CCCTTSC
T ss_pred CCCCCCCCCHHHHHHHCCCHHHHHHHHhCCCC-CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCc-----CCCCCCC
Confidence 99999999999999999999999999999999 99999999999999999999999999999999988 8899999
Q ss_pred cHHHHHHHcCCHHHHHHHHHhcCcCcccccCCCCcHHHHHHhCCCCCccCchHHHHHHHHhcCcCccchhhhhhhhhhhh
Q 004365 158 TILHCAISGDYFDLAFQIIHLYEKLVNSVNEKGVSPLHVLATKPNAFRSGSHLGRCIGTIYHCIFVDKLQEETSYDQYQL 237 (759)
Q Consensus 158 TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~ 237 (759)
||||+|+..|+.+++++|+++ +.+++..|..|.||||+|+..++ .+++++|+++|++++..+.
T Consensus 148 t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~-------~~~v~~Ll~~g~~~~~~~~--------- 210 (437)
T 1n11_A 148 TPLHVAAKYGKVRVAELLLER-DAHPNAAGKNGLTPLHVAVHHNN-------LDIVKLLLPRGGSPHSPAW--------- 210 (437)
T ss_dssp CHHHHHHHTTCHHHHHHHHHT-TCCTTCCCSSCCCHHHHHHHTTC-------HHHHHHHGGGTCCSCCCCT---------
T ss_pred CHHHHHHHcCCHHHHHHHHhC-CCCCCCCCCCCCCHHHHHHHcCC-------HHHHHHHHhCCCCCCCcCC---------
Confidence 999999999999999999995 77899999999999999999995 9999999999999877653
Q ss_pred hhccccCCCCcchHhHHHHHHHHHHHHHHHh
Q 004365 238 ETSKKQTNCPENYETCLNFIRLLKTMVIVLS 268 (759)
Q Consensus 238 ~~~~~~~~~p~~~a~~~~~~~~~~~ll~~~~ 268 (759)
.|.+|++++...+..++++.|++.+.
T Consensus 211 -----~g~t~L~~A~~~~~~~~~~~Ll~~g~ 236 (437)
T 1n11_A 211 -----NGYTPLHIAAKQNQVEVARSLLQYGG 236 (437)
T ss_dssp -----TCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred -----CCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 67789988877766666666655443
No 2
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.4e-52 Score=463.62 Aligned_cols=353 Identities=18% Similarity=0.167 Sum_probs=299.6
Q ss_pred CCcCCcccc----cHHHHHHHHcCCHHHHHHHHhhCcCccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhcccccC
Q 004365 2 ATGIDIDQL----KKDLFKRAMKGEWKEVVKNYEKDERIHKVKITRSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEAL 77 (759)
Q Consensus 2 ~~g~d~~~~----~~~L~~aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~ 77 (759)
+.|+|++.. .++||.|+..|+.+.++.|+.. +++++.++.+|+||||+||..|+.++|++|+++| +++
T Consensus 35 ~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g------a~~ 106 (437)
T 1n11_A 35 QRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQN--KAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENN------ANP 106 (437)
T ss_dssp HTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHH--TCCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHHT------CCT
T ss_pred HcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC--CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhCC------CCC
Confidence 467888754 6899999999999999999988 7889999999999999999999999999999997 788
Q ss_pred ccCCCCCChHHHHHHHcCCHHHHHHHHHcCCcccCCCCCCCCcHHHHHHHCCCHHHHHHHHhcCCCCCCCCccccCCCCC
Q 004365 78 TIGDERGSTPLHIAAGLGNVSMCKCIATADRKLIGERNHENETPFFLAALHGHKDAFLCLHCLCASVDDGYTYSRRNDGE 157 (759)
Q Consensus 78 ~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~d~~g~ 157 (759)
+..|..|+||||+|+..|+.+++++|++++++ .+..+..|.||||+|+..|+.+++++|+++|++++ ..+..|.
T Consensus 107 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-----~~~~~g~ 180 (437)
T 1n11_A 107 NLATTAGHTPLHIAAREGHVETVLALLEKEAS-QACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPN-----AAGKNGL 180 (437)
T ss_dssp TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-----CCCSSCC
T ss_pred CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCC-CcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC-----CCCCCCC
Confidence 99999999999999999999999999999998 88899999999999999999999999999999998 8999999
Q ss_pred cHHHHHHHcCCHHHHHHHHHhcCcCcccccCCCCcHHHHHHhCCCCCccCchHHHHHHHHhcCcCccchhhhhhhhhhhh
Q 004365 158 TILHCAISGDYFDLAFQIIHLYEKLVNSVNEKGVSPLHVLATKPNAFRSGSHLGRCIGTIYHCIFVDKLQEETSYDQYQL 237 (759)
Q Consensus 158 TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~ 237 (759)
||||+|+..|+.+++++|+++ +.+++..+.+|.||||+|+..|+ .++++.|+++|++++..+.
T Consensus 181 t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~-------~~~~~~Ll~~g~~~~~~~~--------- 243 (437)
T 1n11_A 181 TPLHVAVHHNNLDIVKLLLPR-GGSPHSPAWNGYTPLHIAAKQNQ-------VEVARSLLQYGGSANAESV--------- 243 (437)
T ss_dssp CHHHHHHHTTCHHHHHHHGGG-TCCSCCCCTTCCCHHHHHHHTTC-------HHHHHHHHHTTCCTTCCCT---------
T ss_pred CHHHHHHHcCCHHHHHHHHhC-CCCCCCcCCCCCCHHHHHHHcCC-------HHHHHHHHHcCCCCCCCCC---------
Confidence 999999999999999999995 67799999999999999999995 9999999999999887663
Q ss_pred hhccccCCCCcchHhHHHHHHHHHHHHHHHhcCCCCccccCCCCccccCCCCCCCCCCcccccccCCCCCcCCCCCcchh
Q 004365 238 ETSKKQTNCPENYETCLNFIRLLKTMVIVLSNRGNTKKERDAEDPERSKGNDGTGDQGEESRHNIGAQGHQFFPPNYGTC 317 (759)
Q Consensus 238 ~~~~~~~~~p~~~a~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (759)
.|.+|++++...++.++++.|++.+.
T Consensus 244 -----~g~t~L~~A~~~g~~~~v~~Ll~~~~------------------------------------------------- 269 (437)
T 1n11_A 244 -----QGVTPLHLAAQEGHAEMVALLLSKQA------------------------------------------------- 269 (437)
T ss_dssp -----TCCCHHHHHHHTTCHHHHHHHHTTTC-------------------------------------------------
T ss_pred -----CCCCHHHHHHHCCCHHHHHHHHhcCC-------------------------------------------------
Confidence 67889988877665555555544332
Q ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHhhhhhhhHHHHHHHHHHhcccceecCCCCCCCCCCCCccccccCCCcccccCC
Q 004365 318 FEFVKLVSKAMLVILGLGSTKIRKIRDKKQKHTWSVQILDELLRRASLYEYDDDGGKPLRRPSSQAEEDETSPYAIVDGG 397 (759)
Q Consensus 318 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~iv~~Ll~~~~~~~~d~~G~TpL~~a~~~~~~~~~~~~~~~~~g 397 (759)
..+..|..|.||||.|+..+..
T Consensus 270 ----------------------------------------------~~~~~~~~g~t~L~~A~~~~~~------------ 291 (437)
T 1n11_A 270 ----------------------------------------------NGNLGNKSGLTPLHLVAQEGHV------------ 291 (437)
T ss_dssp ----------------------------------------------CTTCCCTTCCCHHHHHHHHTCH------------
T ss_pred ----------------------------------------------CCCCCCCCCCCHHHHHHHcCCH------------
Confidence 2333344444444444332211
Q ss_pred CCccccccCCCCCCCccccccccccccccccCCCCCccccCCCCCCCCccCCCCCCcHHHHHHHcCcHHHHHHHHHHCCc
Q 004365 398 DTDAVLEGYQQPDTSLTDHNVVADTHKLSRNNGKNSEDRNEGGKTGSTIPDMAKRETPILIAAKNGITEIVEKILESFPV 477 (759)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiv~~LL~~~~~ 477 (759)
.+ +..|+..+ .+.+..|..|.||||+|+..|+.++|++|+++ +.
T Consensus 292 --~~--------------------~~~Ll~~g-------------~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-ga 335 (437)
T 1n11_A 292 --PV--------------------ADVLIKHG-------------VMVDATTRMGYTPLHVASHYGNIKLVKFLLQH-QA 335 (437)
T ss_dssp --HH--------------------HHHHHHHT-------------CCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHT-TC
T ss_pred --HH--------------------HHHHHhCC-------------ccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhc-CC
Confidence 00 01111111 11122567799999999999999999999998 77
Q ss_pred ceecccCCCCcchhHHHHcCChhHHHHHHcCCCcccchhccccCCCCcHhHHHHhcCCCC
Q 004365 478 AIHDINSEKKNIVLLAVENRQPHVYQLLLKTTIMKDSVFRKVDDQGNSALHLAATLGDHK 537 (759)
Q Consensus 478 ~~~~~d~~G~TpLH~Av~~~~~~iv~~Ll~~~~~~~~~~n~~D~~G~TpLh~Aa~~g~~~ 537 (759)
+++.+|..|+||||+|+.+|+.++|++|+++|+ +++.+|.+|+||||+|++.|+..
T Consensus 336 d~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga----~~~~~~~~g~t~l~~A~~~g~~~ 391 (437)
T 1n11_A 336 DVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGA----SPNEVSSDGTTPLAIAKRLGYIS 391 (437)
T ss_dssp CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC----CSCCCCSSSCCHHHHHHHTTCHH
T ss_pred CCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcC----CCCCCCCCCCCHHHHHHHcCcHH
Confidence 789999999999999999999999999999998 99999999999999999999843
No 3
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=1.9e-44 Score=383.94 Aligned_cols=182 Identities=24% Similarity=0.182 Sum_probs=163.6
Q ss_pred cHHHHHHHHcCCHHHHHHHHhhCcCccccccCC-CCChHHHHHHHcCCHHHHHHHHHHhhhhcccccCccCCCCCChHHH
Q 004365 11 KKDLFKRAMKGEWKEVVKNYEKDERIHKVKITR-SGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLH 89 (759)
Q Consensus 11 ~~~L~~aa~~g~~~~v~~lL~~~~~~~~~~~d~-~g~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~d~~G~TpLh 89 (759)
.++|+.|+..|+.+.|+.||.. |+++|.++. .|+||||+||..|+.++|++|+++| ++++.+|..+.||+|
T Consensus 26 ~t~L~~Av~~g~~~~V~~LL~~--Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~g------a~~~~~~~~~~~~~~ 97 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQLLEG--GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHG------ADPVLRKKNGATPFI 97 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH--TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT------CCTTCCCTTCCCHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHC--CCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcC------CchhhhccCCCchhH
Confidence 5789999999999999999988 888888775 5999999999999999999999987 788999999999999
Q ss_pred HHHHcCCHHHHHHHHHcCCcccCCCCCCCCcHHHHHHHCCCHHHHHHHHhcCCCCCCC-----CccccCCCCCcHHHHHH
Q 004365 90 IAAGLGNVSMCKCIATADRKLIGERNHENETPFFLAALHGHKDAFLCLHCLCASVDDG-----YTYSRRNDGETILHCAI 164 (759)
Q Consensus 90 ~Aa~~g~~eiv~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~-----~~~~~d~~g~TpLh~A~ 164 (759)
.++..++.+++..++..+++ ++.+|..|.||||+|+..|+.+++++|+++|++++.. +....+..|.||||+|+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~-~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~ 176 (337)
T 4g8k_A 98 LAAIAGSVKLLKLFLSKGAD-VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAA 176 (337)
T ss_dssp HHHHHTCHHHHHHHHTTTCC-TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHH
T ss_pred HHHhcccchhhHHhhhccch-hhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHH
Confidence 99999999999999999998 9999999999999999999999999999999998732 22345677999999999
Q ss_pred HcCCHHHHHHHHHhcCcCcccccCCCCcHHHHHHhCC
Q 004365 165 SGDYFDLAFQIIHLYEKLVNSVNEKGVSPLHVLATKP 201 (759)
Q Consensus 165 ~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~~ 201 (759)
..|+.+++++||++.|++++.+|..|.||||.++..+
T Consensus 177 ~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~ 213 (337)
T 4g8k_A 177 EKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSS 213 (337)
T ss_dssp HHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHS
T ss_pred HCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHc
Confidence 9999999999998788999999999999999888765
No 4
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=3.1e-43 Score=364.66 Aligned_cols=268 Identities=25% Similarity=0.233 Sum_probs=239.3
Q ss_pred cHHHHHHHHcCCHHHHHHHHhhCcCcccccc-CCCCChHHHHHHHcCCHHHHHHHHHHhhhhcccccCccCCCCCChHHH
Q 004365 11 KKDLFKRAMKGEWKEVVKNYEKDERIHKVKI-TRSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLH 89 (759)
Q Consensus 11 ~~~L~~aa~~g~~~~v~~lL~~~~~~~~~~~-d~~g~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~d~~G~TpLh 89 (759)
.++|+.|+..|+.+.++.++.. +.+++.. +..|+||||+|+..|+.+++++|+++| ++++.+|.+|+||||
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g------~~~~~~~~~g~t~L~ 77 (285)
T 1wdy_A 6 NHLLIKAVQNEDVDLVQQLLEG--GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHG------ADPVLRKKNGATPFL 77 (285)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT------CCTTCCCTTCCCHHH
T ss_pred chHHHHHHHcCCHHHHHHHHHc--CCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcC------CCCcccCCCCCCHHH
Confidence 5789999999999999999988 6677766 888999999999999999999999987 778999999999999
Q ss_pred HHHHcCCHHHHHHHHHcCCcccCCCCCCCCcHHHHHHHCCCHHHHHHHHhcCCCCCCCCcccc----------CCCCCcH
Q 004365 90 IAAGLGNVSMCKCIATADRKLIGERNHENETPFFLAALHGHKDAFLCLHCLCASVDDGYTYSR----------RNDGETI 159 (759)
Q Consensus 90 ~Aa~~g~~eiv~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~----------d~~g~Tp 159 (759)
+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+++|++++ .+ +..|.||
T Consensus 78 ~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-----~~~~~~~~~~~~~~~g~t~ 151 (285)
T 1wdy_A 78 LAAIAGSVKLLKLFLSKGAD-VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVN-----LRRKTKEDQERLRKGGATA 151 (285)
T ss_dssp HHHHHTCHHHHHHHHHTTCC-TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTT-----CCCCCCHHHHHTTCCCCCH
T ss_pred HHHHcCCHHHHHHHHHcCCC-CCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcc-----cccccHHHHHhhccCCCcH
Confidence 99999999999999999999 99999999999999999999999999999999998 44 7889999
Q ss_pred HHHHHHcCCHHHHHHHHHhcCcCcccccCCCCcHHHHHHhCCCCCccCchHHHHHHHHhcCcCccchhhhhhhhhhhhhh
Q 004365 160 LHCAISGDYFDLAFQIIHLYEKLVNSVNEKGVSPLHVLATKPNAFRSGSHLGRCIGTIYHCIFVDKLQEETSYDQYQLET 239 (759)
Q Consensus 160 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~ 239 (759)
||+|+..|+.+++++|+++.+.+++..|..|.||||+|+..++. ...
T Consensus 152 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~---~~~------------------------------ 198 (285)
T 1wdy_A 152 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDD---SDV------------------------------ 198 (285)
T ss_dssp HHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCT---TTH------------------------------
T ss_pred HHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHcccc---chH------------------------------
Confidence 99999999999999999977899999999999999999998741 001
Q ss_pred ccccCCCCcchHhHHHHHHHHHHHHHHHhcCCCCccccCCCCccccCCCCCCCCCCcccccccCCCCCcCCCCCcchhhH
Q 004365 240 SKKQTNCPENYETCLNFIRLLKTMVIVLSNRGNTKKERDAEDPERSKGNDGTGDQGEESRHNIGAQGHQFFPPNYGTCFE 319 (759)
Q Consensus 240 ~~~~~~~p~~~a~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (759)
T Consensus 199 -------------------------------------------------------------------------------- 198 (285)
T 1wdy_A 199 -------------------------------------------------------------------------------- 198 (285)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHhcchhHHHHHHHhhhhhhhHHHHHHHHHHhcccceecCCCCCCCCCCCCccccccCCCcccccCCCC
Q 004365 320 FVKLVSKAMLVILGLGSTKIRKIRDKKQKHTWSVQILDELLRRASLYEYDDDGGKPLRRPSSQAEEDETSPYAIVDGGDT 399 (759)
Q Consensus 320 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~iv~~Ll~~~~~~~~d~~G~TpL~~a~~~~~~~~~~~~~~~~~g~~ 399 (759)
.++++.|++++...
T Consensus 199 ---------------------------------~~i~~~Ll~~g~~~--------------------------------- 212 (285)
T 1wdy_A 199 ---------------------------------EAITHLLLDHGADV--------------------------------- 212 (285)
T ss_dssp ---------------------------------HHHHHHHHHTTCCS---------------------------------
T ss_pred ---------------------------------HHHHHHHHHcCCCC---------------------------------
Confidence 34555555553110
Q ss_pred ccccccCCCCCCCccccccccccccccccCCCCCccccCCCCCCCCccCCCCCCcHHHHHHHcCcHHHHHHHHHHCCcce
Q 004365 400 DAVLEGYQQPDTSLTDHNVVADTHKLSRNNGKNSEDRNEGGKTGSTIPDMAKRETPILIAAKNGITEIVEKILESFPVAI 479 (759)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~ 479 (759)
+..|..|.||||+|+..|+.++|++|+++.+.++
T Consensus 213 ----------------------------------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~ 246 (285)
T 1wdy_A 213 ----------------------------------------------NVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEI 246 (285)
T ss_dssp ----------------------------------------------SCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCT
T ss_pred ----------------------------------------------CCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCc
Confidence 0145669999999999999999999999778889
Q ss_pred ecccCCCCcchhHHHHcCChhHHHHHHcCCCcccchhccccC
Q 004365 480 HDINSEKKNIVLLAVENRQPHVYQLLLKTTIMKDSVFRKVDD 521 (759)
Q Consensus 480 ~~~d~~G~TpLH~Av~~~~~~iv~~Ll~~~~~~~~~~n~~D~ 521 (759)
+.+|..|+||||+|++.|+.+++++|+++|+ +++.+|.
T Consensus 247 ~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga----~~~~~d~ 284 (285)
T 1wdy_A 247 NDTDSDGKTALLLAVELKLKKIAELLCKRGA----STDCGDL 284 (285)
T ss_dssp TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSS----CSCCSSC
T ss_pred cccCCCCCcHHHHHHHcCcHHHHHHHHHcCC----CCCcccc
Confidence 9999999999999999999999999999998 8888773
No 5
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=1.7e-42 Score=370.79 Aligned_cols=278 Identities=17% Similarity=0.148 Sum_probs=234.6
Q ss_pred ccHHHHHHHHcCCHHHHHHHHhhCcCccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhcccccCccCCCCCChHHH
Q 004365 10 LKKDLFKRAMKGEWKEVVKNYEKDERIHKVKITRSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLH 89 (759)
Q Consensus 10 ~~~~L~~aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~d~~G~TpLh 89 (759)
..++|+.||..|+.+.++.+|.+ .+.+++..|..|+||||+||..|+.++|++|+++| ++++.+|..|+||||
T Consensus 24 ~~~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g------~~~~~~~~~g~t~L~ 96 (351)
T 3utm_A 24 KKDELLEAARSGNEEKLMALLTP-LNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHG------ADVHAKDKGGLVPLH 96 (351)
T ss_dssp HHHHHHHHHHHTCHHHHHHHCCT-TTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTT------CCTTCCCTTCCCHHH
T ss_pred cchhHHHHHHcCCHHHHHHHHHh-cCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcC------CCCCccCCCCCcHHH
Confidence 36789999999999999999987 47888899999999999999999999999999987 789999999999999
Q ss_pred HHHHcCCHHHHHHHHHcCCcccCCCCCCCCcHHHHHHHCCCHHHHHHHHhcCCCCCCCCccccCCCCCcHHHHHHH----
Q 004365 90 IAAGLGNVSMCKCIATADRKLIGERNHENETPFFLAALHGHKDAFLCLHCLCASVDDGYTYSRRNDGETILHCAIS---- 165 (759)
Q Consensus 90 ~Aa~~g~~eiv~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~d~~g~TpLh~A~~---- 165 (759)
+||..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|+++|++++ ..+..|.||+|+|+.
T Consensus 97 ~A~~~g~~~iv~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-----~~~~~g~~~l~~a~~~~~~ 170 (351)
T 3utm_A 97 NACSYGHYEVTELLLKHGAC-VNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPT-----LVNCHGKSAVDMAPTPELR 170 (351)
T ss_dssp HHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-----CCCTTSCCHHHHCSSHHHH
T ss_pred HHHHCCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc-----cccCCCCcchHHHhhhhhH
Confidence 99999999999999999998 99999999999999999999999999999999998 899999999887654
Q ss_pred -----------------cCCHHHHHHHHHhcCcCcccccCCCCcHHHHHHhCCCCCccCchHHHHHHHHhcCcCccchhh
Q 004365 166 -----------------GDYFDLAFQIIHLYEKLVNSVNEKGVSPLHVLATKPNAFRSGSHLGRCIGTIYHCIFVDKLQE 228 (759)
Q Consensus 166 -----------------~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~ 228 (759)
.++.+.++.++.... .....+..|.||||+|+..++. .
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~t~L~~A~~~~~~----~-------------------- 225 (351)
T 3utm_A 171 ERLTYEFKGHSLLQAAREADLAKVKKTLALEI-INFKQPQSHETALHCAVASLHP----K-------------------- 225 (351)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCC-TTCCCTTTCCCHHHHHHHCCST----T--------------------
T ss_pred HHHHhhhcccHHHHHHHhccHHHHHHHHHhhc-ccccCCCCCCCHHHHHHHHhCc----c--------------------
Confidence 444555555554322 2334556666677766666420 0
Q ss_pred hhhhhhhhhhhccccCCCCcchHhHHHHHHHHHHHHHHHhcCCCCccccCCCCccccCCCCCCCCCCcccccccCCCCCc
Q 004365 229 ETSYDQYQLETSKKQTNCPENYETCLNFIRLLKTMVIVLSNRGNTKKERDAEDPERSKGNDGTGDQGEESRHNIGAQGHQ 308 (759)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (759)
T Consensus 226 -------------------------------------------------------------------------------- 225 (351)
T 3utm_A 226 -------------------------------------------------------------------------------- 225 (351)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHHhcchhHHHHHHHhhhhhhhHHHHHHHHHHhcccceecCCCCCCCCCCCCccccccC
Q 004365 309 FFPPNYGTCFEFVKLVSKAMLVILGLGSTKIRKIRDKKQKHTWSVQILDELLRRASLYEYDDDGGKPLRRPSSQAEEDET 388 (759)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~iv~~Ll~~~~~~~~d~~G~TpL~~a~~~~~~~~~ 388 (759)
..++++.|++++...
T Consensus 226 -------------------------------------------~~~~~~~Ll~~g~~~---------------------- 240 (351)
T 3utm_A 226 -------------------------------------------RKQVAELLLRKGANV---------------------- 240 (351)
T ss_dssp -------------------------------------------HHHHHHHHHHTTCCT----------------------
T ss_pred -------------------------------------------HHHHHHHHHHcCCCc----------------------
Confidence 145666666663111
Q ss_pred CCcccccCCCCccccccCCCCCCCccccccccccccccccCCCCCccccCCCCCCCCccCCCCCCcHHHHHHHcCcHHHH
Q 004365 389 SPYAIVDGGDTDAVLEGYQQPDTSLTDHNVVADTHKLSRNNGKNSEDRNEGGKTGSTIPDMAKRETPILIAAKNGITEIV 468 (759)
Q Consensus 389 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiv 468 (759)
+..|.+|.||||+|+..|+.++|
T Consensus 241 ---------------------------------------------------------~~~~~~g~t~L~~A~~~g~~~~v 263 (351)
T 3utm_A 241 ---------------------------------------------------------NEKNKDFMTPLHVAAERAHNDVM 263 (351)
T ss_dssp ---------------------------------------------------------TCCCTTCCCHHHHHHHTTCHHHH
T ss_pred ---------------------------------------------------------CCcCCCCCCHHHHHHHcCCHHHH
Confidence 01456799999999999999999
Q ss_pred HHHHHHCCcceecccCCCCcchhHHHHcCChhHHHHHHcCCCcccchhccccCCCCcHhHHHHh
Q 004365 469 EKILESFPVAIHDINSEKKNIVLLAVENRQPHVYQLLLKTTIMKDSVFRKVDDQGNSALHLAAT 532 (759)
Q Consensus 469 ~~LL~~~~~~~~~~d~~G~TpLH~Av~~~~~~iv~~Ll~~~~~~~~~~n~~D~~G~TpLh~Aa~ 532 (759)
++|+++ +.+++.+|..|+||||+|+.+|+.++|++|+++|+ +++.+|.+|+||||+|..
T Consensus 264 ~~Ll~~-ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga----d~~~~~~~g~tal~~a~~ 322 (351)
T 3utm_A 264 EVLHKH-GAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGS----DPSIISLQGFTAAQMGNE 322 (351)
T ss_dssp HHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC----CTTCCCTTSCCHHHHSCH
T ss_pred HHHHHC-CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCC----CCCCcCCCCCChhhhhhH
Confidence 999988 77889999999999999999999999999999998 999999999999999943
No 6
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=2.7e-42 Score=353.01 Aligned_cols=246 Identities=19% Similarity=0.130 Sum_probs=216.8
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHHhhhhcccccCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCcccCCCCCCCCcHHH
Q 004365 44 SGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCIATADRKLIGERNHENETPFF 123 (759)
Q Consensus 44 ~g~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~g~~~~~~~d~~G~TpLh 123 (759)
+|+||||+||..|+.++|++|+++| ++++.+|.+|+||||+||..|+.+++++|+++|++ ++.+|..|+||||
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g------~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~ 74 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQG------WAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ-VNGVTADWHTPLF 74 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTT------CCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCC------CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHH
Confidence 6899999999999999999999987 78999999999999999999999999999999998 9999999999999
Q ss_pred HHHHCCCHHHHHHHHhcCCCCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccccCCCCcHHHHHHhCCCC
Q 004365 124 LAALHGHKDAFLCLHCLCASVDDGYTYSRRNDGETILHCAISGDYFDLAFQIIHLYEKLVNSVNEKGVSPLHVLATKPNA 203 (759)
Q Consensus 124 ~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~~~~ 203 (759)
+|+..|+.+++++|+++|++++ .+.+|.||||+|+..|+.+++++|++. +.+++..|..|.||||+|+..|+
T Consensus 75 ~A~~~~~~~~v~~Ll~~g~~~~------~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~- 146 (261)
T 2xai_A 75 NACVSGSWDCVNLLLQHGASVQ------PESDLASPIHEAARRGHVECVNSLIAY-GGNIDHKISHLGTPLYLACENQQ- 146 (261)
T ss_dssp HHHHHTCHHHHHHHHHTTCCSS------CSCTTCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCBTTTBCHHHHHHHTTC-
T ss_pred HHHHcCCHHHHHHHHHCCCCCC------CCCCCCCHHHHHHHcCcHHHHHHHHHc-CCCCCcCCCCCCCHHHHHHHhCC-
Confidence 9999999999999999999997 456699999999999999999999995 78899999999999999999985
Q ss_pred CccCchHHHHHHHHhcCcCccchhhhhhhhhhhhhhccccCCCCcchHhHHHHHHHHHHHHHHHhcCCCCccccCCCCcc
Q 004365 204 FRSGSHLGRCIGTIYHCIFVDKLQEETSYDQYQLETSKKQTNCPENYETCLNFIRLLKTMVIVLSNRGNTKKERDAEDPE 283 (759)
Q Consensus 204 ~~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~ 283 (759)
.+++++|+++|++++
T Consensus 147 ------~~~v~~Ll~~g~~~~----------------------------------------------------------- 161 (261)
T 2xai_A 147 ------RACVKKLLESGADVN----------------------------------------------------------- 161 (261)
T ss_dssp ------HHHHHHHHHHTCCTT-----------------------------------------------------------
T ss_pred ------HHHHHHHHHcCCCCC-----------------------------------------------------------
Confidence 555555555544432
Q ss_pred ccCCCCCCCCCCcccccccCCCCCcCCCCCcchhhHHHHHHHHHHHHHHhcchhHHHHHHHhhhhhhhHHHHHHHHHHhc
Q 004365 284 RSKGNDGTGDQGEESRHNIGAQGHQFFPPNYGTCFEFVKLVSKAMLVILGLGSTKIRKIRDKKQKHTWSVQILDELLRRA 363 (759)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~iv~~Ll~~~ 363 (759)
T Consensus 162 -------------------------------------------------------------------------------- 161 (261)
T 2xai_A 162 -------------------------------------------------------------------------------- 161 (261)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccceecCCCCCCCCCCCCccccccCCCcccccCCCCccccccCCCCCCCccccccccccccccccCCCCCccccCCCCCC
Q 004365 364 SLYEYDDDGGKPLRRPSSQAEEDETSPYAIVDGGDTDAVLEGYQQPDTSLTDHNVVADTHKLSRNNGKNSEDRNEGGKTG 443 (759)
Q Consensus 364 ~~~~~d~~G~TpL~~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~ 443 (759)
T Consensus 162 -------------------------------------------------------------------------------- 161 (261)
T 2xai_A 162 -------------------------------------------------------------------------------- 161 (261)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccCCCCCCcHHHHHHHcCcHHHHHHHHHHCCcceecccCCCCcchhHHHHcCChhHHHHHHcCCCcc----cchhccc
Q 004365 444 STIPDMAKRETPILIAAKNGITEIVEKILESFPVAIHDINSEKKNIVLLAVENRQPHVYQLLLKTTIMK----DSVFRKV 519 (759)
Q Consensus 444 ~~~~~d~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~d~~G~TpLH~Av~~~~~~iv~~Ll~~~~~~----~~~~n~~ 519 (759)
.|..|.||||+|+..|+.++|++|+++ +.+++.+|.+|+||||+|+.++ +++++|++++... ...++.+
T Consensus 162 ----~~~~g~t~Lh~A~~~~~~~~v~~Ll~~-gad~~~~d~~g~tpl~~A~~~~--~~~~~ll~~~~~~~l~~~~~~~~r 234 (261)
T 2xai_A 162 ----QGKGQDSPLHAVARTASEELACLLMDF-GADTQAKNAEGKRPVELVPPES--PLAQLFLEREGPPSLMQLCRLRIR 234 (261)
T ss_dssp ----CCBTTBCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCGGGGSCTTC--THHHHHHHC-CCCCHHHHHHHHHH
T ss_pred ----CCCCCCChHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCChhhhccccc--cHHHHHHhccCCccHHHHHHHHHH
Confidence 124489999999999999999999998 7788999999999999999655 5999999987522 1367789
Q ss_pred cCCCCcHhHHHHhcCCC
Q 004365 520 DDQGNSALHLAATLGDH 536 (759)
Q Consensus 520 D~~G~TpLh~Aa~~g~~ 536 (759)
|..|+||||+|++...+
T Consensus 235 ~~~g~t~l~~~~~~~~p 251 (261)
T 2xai_A 235 KCFGIQQHHKITKLVLP 251 (261)
T ss_dssp TTSCTTCGGGGGGSSSC
T ss_pred HHhchhccccCcccCCc
Confidence 99999999999987653
No 7
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=1.5e-43 Score=381.85 Aligned_cols=292 Identities=17% Similarity=0.184 Sum_probs=223.6
Q ss_pred ccHHHHHHHHcCCHHHHHHHHhhCcCc----------------------cccccCCCCChHHHHHHHcCCHHHHHHHHHH
Q 004365 10 LKKDLFKRAMKGEWKEVVKNYEKDERI----------------------HKVKITRSGGTALHIAVSDGQEEIVEDLVRI 67 (759)
Q Consensus 10 ~~~~L~~aa~~g~~~~v~~lL~~~~~~----------------------~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ 67 (759)
...+|+.++..|..+.++.++...... ..+..+..|+||||+||..|+ +++++|+.
T Consensus 37 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~t~L~~Aa~~~~-~~~~~L~~- 114 (373)
T 2fo1_E 37 SQHSLLEASYDGYIKRQRNELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLHTEAAGSY-AITEPITR- 114 (373)
T ss_dssp ---------------------------------------------------------CCCHHHHHHHSSS-CCCSCCST-
T ss_pred cccccccccCCccccchhhhhhhhccccCccccCCCCCccccccccccccccCCCCCCccHHHHHhcCCc-hHHHHhcc-
Confidence 355677777777766666555332111 123457889999999999665 78887764
Q ss_pred hhhhcccccCccCC-CCCChHHHHHHHcCCHHHHHHHH--------HcCCcccCCCCCCCCcHHHHHHHCCCHHHHHHHH
Q 004365 68 IKEKQQLEALTIGD-ERGSTPLHIAAGLGNVSMCKCIA--------TADRKLIGERNHENETPFFLAALHGHKDAFLCLH 138 (759)
Q Consensus 68 g~~~~~~~~~~~~d-~~G~TpLh~Aa~~g~~eiv~~Ll--------~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll 138 (759)
.+++.+| ..|+||||+||..|+.+++++|+ ++|++ ++.+|..|+||||+|+..|+.++|++|+
T Consensus 115 -------~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~-vn~~d~~g~TpL~~A~~~g~~~iv~~Ll 186 (373)
T 2fo1_E 115 -------ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGAD-VNAMDCDENTPLMLAVLARRRRLVAYLM 186 (373)
T ss_dssp -------TTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred -------ccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCC-CcCCCCCCCCHHHHHHHcChHHHHHHHH
Confidence 5688888 79999999999999998887776 78988 9999999999999999999999999999
Q ss_pred hcCCCCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcC--cCcccccCCCCcHHHHHHhCCCCCccCchHHHHHHH
Q 004365 139 CLCASVDDGYTYSRRNDGETILHCAISGDYFDLAFQIIHLYE--KLVNSVNEKGVSPLHVLATKPNAFRSGSHLGRCIGT 216 (759)
Q Consensus 139 ~~ga~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~--~~~~~~d~~G~TpLh~Aa~~~~~~~~~~~~~~~~~L 216 (759)
++|++++ .+|..|.||||+|+..|+.+++++|++.+. .+++..|..|.||||+|+..+. ..+.+++++|
T Consensus 187 ~~ga~~~-----~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~----~~~~~~v~~L 257 (373)
T 2fo1_E 187 KAGADPT-----IYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEG----RDQVASAKLL 257 (373)
T ss_dssp HTTCCSC-----CCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCS----TTHHHHHHHH
T ss_pred HCCCCCc-----ccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCC----cchHHHHHHH
Confidence 9999999 899999999999999999999999998542 6799999999999999998862 1136666666
Q ss_pred HhcCcCccchhhhhhhhhhhhhhccccCCCCcchHhHHHHHHHHHHHHHHHhcCCCCccccCCCCccccCCCCCCCCCCc
Q 004365 217 IYHCIFVDKLQEETSYDQYQLETSKKQTNCPENYETCLNFIRLLKTMVIVLSNRGNTKKERDAEDPERSKGNDGTGDQGE 296 (759)
Q Consensus 217 l~~ga~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (759)
+++|++++.....
T Consensus 258 l~~g~~~~~~~~~------------------------------------------------------------------- 270 (373)
T 2fo1_E 258 VEKGAKVDYDGAA------------------------------------------------------------------- 270 (373)
T ss_dssp HHHTCCSSCCSGG-------------------------------------------------------------------
T ss_pred HHCCCCccccccc-------------------------------------------------------------------
Confidence 6666655432210
Q ss_pred ccccccCCCCCcCCCCCcchhhHHHHHHHHHHHHHHhcchhHHHHHHHhhhhhhhHHHHHHHHHHhcccceecCCCCCCC
Q 004365 297 ESRHNIGAQGHQFFPPNYGTCFEFVKLVSKAMLVILGLGSTKIRKIRDKKQKHTWSVQILDELLRRASLYEYDDDGGKPL 376 (759)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~iv~~Ll~~~~~~~~d~~G~TpL 376 (759)
T Consensus 271 -------------------------------------------------------------------------------- 270 (373)
T 2fo1_E 271 -------------------------------------------------------------------------------- 270 (373)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCccccccCCCcccccCCCCccccccCCCCCCCccccccccccccccccCCCCCccccCCCCCCCCccCCCCCCcHH
Q 004365 377 RRPSSQAEEDETSPYAIVDGGDTDAVLEGYQQPDTSLTDHNVVADTHKLSRNNGKNSEDRNEGGKTGSTIPDMAKRETPI 456 (759)
Q Consensus 377 ~~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~d~~g~TpL 456 (759)
..+..|..|.|||
T Consensus 271 -------------------------------------------------------------------~~~~~d~~g~t~L 283 (373)
T 2fo1_E 271 -------------------------------------------------------------------RKDSEKYKGRTAL 283 (373)
T ss_dssp -------------------------------------------------------------------GTSSSSCCCCCTH
T ss_pred -------------------------------------------------------------------ccCcccccCCCHH
Confidence 0001456799999
Q ss_pred HHHHHcCcHHHHHHHHHHCCcceecccCCCCcchhHHHHcCChhHHHHHHcCCCcccchhccccCCCCcHhHHHHhcCCC
Q 004365 457 LIAAKNGITEIVEKILESFPVAIHDINSEKKNIVLLAVENRQPHVYQLLLKTTIMKDSVFRKVDDQGNSALHLAATLGDH 536 (759)
Q Consensus 457 h~Aa~~g~~eiv~~LL~~~~~~~~~~d~~G~TpLH~Av~~~~~~iv~~Ll~~~~~~~~~~n~~D~~G~TpLh~Aa~~g~~ 536 (759)
|+||..|+.++|++|+++.+.+++.+|..|+||||+|+.+|+.++|++|+++|+ +++.+|.+|+||||+|+..|+.
T Consensus 284 h~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga----d~~~~d~~g~t~l~~A~~~g~~ 359 (373)
T 2fo1_E 284 HYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGA----SVEAVDATDHTARQLAQANNHH 359 (373)
T ss_dssp HHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC----CSSCCCSSSCCHHHHHHHTTCH
T ss_pred HHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC----CccCCCCCCCCHHHHHHHcCCH
Confidence 999999999999999999778999999999999999999999999999999998 9999999999999999999995
Q ss_pred Cc
Q 004365 537 KP 538 (759)
Q Consensus 537 ~~ 538 (759)
++
T Consensus 360 ~i 361 (373)
T 2fo1_E 360 NI 361 (373)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 8
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=6.1e-42 Score=366.40 Aligned_cols=315 Identities=19% Similarity=0.152 Sum_probs=254.5
Q ss_pred CccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhcccccCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCcccCCC
Q 004365 35 RIHKVKITRSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCIATADRKLIGER 114 (759)
Q Consensus 35 ~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~g~~~~~~~ 114 (759)
+.+.+..+..|.|+||.||+.|+.+.|+.|+... +.+++.+|..|+||||+||..|+.+++++|+++|++ ++.+
T Consensus 14 ~~~~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~-----~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~ 87 (351)
T 3utm_A 14 SAKAVLTGEYKKDELLEAARSGNEEKLMALLTPL-----NVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGAD-VHAK 87 (351)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHCCTT-----TTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCC
T ss_pred ceeeeeeccccchhHHHHHHcCCHHHHHHHHHhc-----CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcc
Confidence 5666667888999999999999999999998752 478999999999999999999999999999999999 9999
Q ss_pred CCCCCcHHHHHHHCCCHHHHHHHHhcCCCCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccccCCCCcHH
Q 004365 115 NHENETPFFLAALHGHKDAFLCLHCLCASVDDGYTYSRRNDGETILHCAISGDYFDLAFQIIHLYEKLVNSVNEKGVSPL 194 (759)
Q Consensus 115 d~~G~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpL 194 (759)
|..|+||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++ +++++..+..|.||+
T Consensus 88 ~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~-----~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~~~l 161 (351)
T 3utm_A 88 DKGGLVPLHNACSYGHYEVTELLLKHGACVN-----AMDLWQFTPLHEAASKNRVEVCSLLLSH-GADPTLVNCHGKSAV 161 (351)
T ss_dssp CTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-----CCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHH
T ss_pred CCCCCcHHHHHHHCCCHHHHHHHHHCCCCCC-----CCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCccccCCCCcch
Confidence 9999999999999999999999999999999 8999999999999999999999999995 788999999999999
Q ss_pred HHHHhCCCCCccCchHHHHHHHHhcCcCccchhhhhhhhhhhhhhccccCCCCcchHhHHHHHHHHHHHHHHHhcCCCCc
Q 004365 195 HVLATKPNAFRSGSHLGRCIGTIYHCIFVDKLQEETSYDQYQLETSKKQTNCPENYETCLNFIRLLKTMVIVLSNRGNTK 274 (759)
Q Consensus 195 h~Aa~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~~ll~~~~~~g~~~ 274 (759)
++|+..+. .+.+++....
T Consensus 162 ~~a~~~~~-------~~~~~~~~~~------------------------------------------------------- 179 (351)
T 3utm_A 162 DMAPTPEL-------RERLTYEFKG------------------------------------------------------- 179 (351)
T ss_dssp HHCSSHHH-------HHHHHHHHHH-------------------------------------------------------
T ss_pred HHHhhhhh-------HHHHHhhhcc-------------------------------------------------------
Confidence 99986542 2222221100
Q ss_pred cccCCCCccccCCCCCCCCCCcccccccCCCCCcCCCCCcchhhHHHHHHHHHHHHHHhcchhHHHHHHHhhhhhhhHHH
Q 004365 275 KERDAEDPERSKGNDGTGDQGEESRHNIGAQGHQFFPPNYGTCFEFVKLVSKAMLVILGLGSTKIRKIRDKKQKHTWSVQ 354 (759)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 354 (759)
..+..+...+ ..+
T Consensus 180 ---------------------------------------------------~~~~~~~~~~----------------~~~ 192 (351)
T 3utm_A 180 ---------------------------------------------------HSLLQAAREA----------------DLA 192 (351)
T ss_dssp ---------------------------------------------------HHHHHHHHTT----------------CHH
T ss_pred ---------------------------------------------------cHHHHHHHhc----------------cHH
Confidence 0000000000 134
Q ss_pred HHHHHHHhcccceecCCCCCCCCCCCCccccccCCCcccccCCCCccccccCCCCCCCccccccccccccccccCCCCCc
Q 004365 355 ILDELLRRASLYEYDDDGGKPLRRPSSQAEEDETSPYAIVDGGDTDAVLEGYQQPDTSLTDHNVVADTHKLSRNNGKNSE 434 (759)
Q Consensus 355 iv~~Ll~~~~~~~~d~~G~TpL~~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 434 (759)
.++.++......
T Consensus 193 ~~~~~l~~~~~~-------------------------------------------------------------------- 204 (351)
T 3utm_A 193 KVKKTLALEIIN-------------------------------------------------------------------- 204 (351)
T ss_dssp HHHHHTTTCCTT--------------------------------------------------------------------
T ss_pred HHHHHHHhhccc--------------------------------------------------------------------
Confidence 444444331100
Q ss_pred cccCCCCCCCCccCCCCCCcHHHHHHHc---CcHHHHHHHHHHCCcceecccCCCCcchhHHHHcCChhHHHHHHcCCCc
Q 004365 435 DRNEGGKTGSTIPDMAKRETPILIAAKN---GITEIVEKILESFPVAIHDINSEKKNIVLLAVENRQPHVYQLLLKTTIM 511 (759)
Q Consensus 435 ~~~~~~~~~~~~~~d~~g~TpLh~Aa~~---g~~eiv~~LL~~~~~~~~~~d~~G~TpLH~Av~~~~~~iv~~Ll~~~~~ 511 (759)
...+..|.||||+|+.. ++.+++++|+++ +.+++.+|..|+||||+|+.+|+.+++++|+++|+
T Consensus 205 -----------~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga- 271 (351)
T 3utm_A 205 -----------FKQPQSHETALHCAVASLHPKRKQVAELLLRK-GANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGA- 271 (351)
T ss_dssp -----------CCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC-
T ss_pred -----------ccCCCCCCCHHHHHHHHhCccHHHHHHHHHHc-CCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCC-
Confidence 01456699999999999 668999999988 77788999999999999999999999999999998
Q ss_pred ccchhccccCCCCcHhHHHHhcCCCCccccchhHHHHHHHHHHHHHHhhcCCccchhhcccCCCCccccchhhhHHHHHh
Q 004365 512 KDSVFRKVDDQGNSALHLAATLGDHKPWLIPGAALQMQWELRWYEFVKESMPFHFFVRYNKQNKSPKDVFTETHKELVQA 591 (759)
Q Consensus 512 ~~~~~n~~D~~G~TpLh~Aa~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~n~~g~T~~di~~~~~~~~~~~ 591 (759)
++|.+|..|+||||+|++.|+.+++ +++- +. ......+|++|+||++++.+.-.+++.+
T Consensus 272 ---~~n~~d~~g~t~L~~A~~~~~~~~v-------------~~Ll--~~---gad~~~~~~~g~tal~~a~~~~~~~l~~ 330 (351)
T 3utm_A 272 ---KMNALDSLGQTALHRAALAGHLQTC-------------RLLL--SY---GSDPSIISLQGFTAAQMGNEAVQQILSE 330 (351)
T ss_dssp ---CTTCCCTTSCCHHHHHHHHTCHHHH-------------HHHH--HT---TCCTTCCCTTSCCHHHHSCHHHHHHHHH
T ss_pred ---CCCCcCCCCCCHHHHHHHcCcHHHH-------------HHHH--Hc---CCCCCCcCCCCCChhhhhhHHHHHHHHh
Confidence 9999999999999999999984432 1211 11 2234689999999999998776666554
Q ss_pred c
Q 004365 592 G 592 (759)
Q Consensus 592 ~ 592 (759)
.
T Consensus 331 ~ 331 (351)
T 3utm_A 331 S 331 (351)
T ss_dssp C
T ss_pred c
Confidence 3
No 9
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.9e-41 Score=351.24 Aligned_cols=249 Identities=21% Similarity=0.167 Sum_probs=223.1
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHHHhhhhcccccCccC-CCCCChHHHHHHHcCCHHHHHHHHHcCCcccCCCCCCCCcH
Q 004365 43 RSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIG-DERGSTPLHIAAGLGNVSMCKCIATADRKLIGERNHENETP 121 (759)
Q Consensus 43 ~~g~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~-d~~G~TpLh~Aa~~g~~eiv~~Ll~~g~~~~~~~d~~G~Tp 121 (759)
.+|.||||.|++.|+.++|++|++.| .+++.+ +..|+||||+|+..|+.+++++|+++|++ ++.+|..|.||
T Consensus 3 ~~g~~~L~~A~~~g~~~~v~~Ll~~g------~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~ 75 (285)
T 1wdy_A 3 VEDNHLLIKAVQNEDVDLVQQLLEGG------ANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD-PVLRKKNGATP 75 (285)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTT------CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCH
T ss_pred cccchHHHHHHHcCCHHHHHHHHHcC------CCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCH
Confidence 35889999999999999999999987 667777 88899999999999999999999999999 99999999999
Q ss_pred HHHHHHCCCHHHHHHHHhcCCCCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccc----------cCCCC
Q 004365 122 FFLAALHGHKDAFLCLHCLCASVDDGYTYSRRNDGETILHCAISGDYFDLAFQIIHLYEKLVNSV----------NEKGV 191 (759)
Q Consensus 122 Lh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~----------d~~G~ 191 (759)
||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++ +.+++.. +..|.
T Consensus 76 L~~A~~~~~~~~v~~Ll~~g~~~~-----~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~~~~~~~~~~~g~ 149 (285)
T 1wdy_A 76 FLLAAIAGSVKLLKLFLSKGADVN-----ECDFYGFTAFMEAAVYGKVKALKFLYKR-GANVNLRRKTKEDQERLRKGGA 149 (285)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCTT-----CBCTTCCBHHHHHHHTTCHHHHHHHHHT-TCCTTCCCCCCHHHHHTTCCCC
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCC-----ccCcccCCHHHHHHHhCCHHHHHHHHHh-CCCcccccccHHHHHhhccCCC
Confidence 999999999999999999999998 8999999999999999999999999995 6778877 78899
Q ss_pred cHHHHHHhCCCCCccCchHHHHHHHHhc-CcCccchhhhhhhhhhhhhhccccCCCCcchHhHHHHHHHHHHHHHHHhcC
Q 004365 192 SPLHVLATKPNAFRSGSHLGRCIGTIYH-CIFVDKLQEETSYDQYQLETSKKQTNCPENYETCLNFIRLLKTMVIVLSNR 270 (759)
Q Consensus 192 TpLh~Aa~~~~~~~~~~~~~~~~~Ll~~-ga~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~~ll~~~~~~ 270 (759)
||||+|+..|+ .+++++|+++ |++++.
T Consensus 150 t~L~~A~~~~~-------~~~v~~Ll~~~~~~~~~--------------------------------------------- 177 (285)
T 1wdy_A 150 TALMDAAEKGH-------VEVLKILLDEMGADVNA--------------------------------------------- 177 (285)
T ss_dssp CHHHHHHHHTC-------HHHHHHHHHTSCCCTTC---------------------------------------------
T ss_pred cHHHHHHHcCC-------HHHHHHHHHhcCCCCCc---------------------------------------------
Confidence 99999999885 4444444433 322211
Q ss_pred CCCccccCCCCccccCCCCCCCCCCcccccccCCCCCcCCCCCcchhhHHHHHHHHHHHHHHhcchhHHHHHHHhhhhhh
Q 004365 271 GNTKKERDAEDPERSKGNDGTGDQGEESRHNIGAQGHQFFPPNYGTCFEFVKLVSKAMLVILGLGSTKIRKIRDKKQKHT 350 (759)
Q Consensus 271 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 350 (759)
T Consensus 178 -------------------------------------------------------------------------------- 177 (285)
T 1wdy_A 178 -------------------------------------------------------------------------------- 177 (285)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHHHhcccceecCCCCCCCCCCCCccccccCCCcccccCCCCccccccCCCCCCCccccccccccccccccCC
Q 004365 351 WSVQILDELLRRASLYEYDDDGGKPLRRPSSQAEEDETSPYAIVDGGDTDAVLEGYQQPDTSLTDHNVVADTHKLSRNNG 430 (759)
Q Consensus 351 ~~~~iv~~Ll~~~~~~~~d~~G~TpL~~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 430 (759)
T Consensus 178 -------------------------------------------------------------------------------- 177 (285)
T 1wdy_A 178 -------------------------------------------------------------------------------- 177 (285)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccCCCCCCCCccCCCCCCcHHHHHHHcCc----HHHHHHHHHHCCcceecccCCCCcchhHHHHcCChhHHHHHH
Q 004365 431 KNSEDRNEGGKTGSTIPDMAKRETPILIAAKNGI----TEIVEKILESFPVAIHDINSEKKNIVLLAVENRQPHVYQLLL 506 (759)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~d~~g~TpLh~Aa~~g~----~eiv~~LL~~~~~~~~~~d~~G~TpLH~Av~~~~~~iv~~Ll 506 (759)
.|..|.||||+|+..|+ .+++++|+++ +.+++.+|..|+||||+|+++|+.+++++|+
T Consensus 178 -----------------~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 239 (285)
T 1wdy_A 178 -----------------CDNMGRNALIHALLSSDDSDVEAITHLLLDH-GADVNVRGERGKTPLILAVEKKHLGLVQRLL 239 (285)
T ss_dssp -----------------CCTTSCCHHHHHHHCSCTTTHHHHHHHHHHT-TCCSSCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred -----------------cCCCCCCHHHHHHHccccchHHHHHHHHHHc-CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHH
Confidence 45669999999999999 9999999998 7778999999999999999999999999999
Q ss_pred c-CCCcccchhccccCCCCcHhHHHHhcCCCCc
Q 004365 507 K-TTIMKDSVFRKVDDQGNSALHLAATLGDHKP 538 (759)
Q Consensus 507 ~-~~~~~~~~~n~~D~~G~TpLh~Aa~~g~~~~ 538 (759)
+ .++ +++.+|.+|+||||+|++.|+.++
T Consensus 240 ~~~g~----~~~~~~~~g~t~l~~A~~~~~~~i 268 (285)
T 1wdy_A 240 EQEHI----EINDTDSDGKTALLLAVELKLKKI 268 (285)
T ss_dssp HSSSC----CTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred hccCC----CccccCCCCCcHHHHHHHcCcHHH
Confidence 9 676 899999999999999999998544
No 10
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=2e-41 Score=351.00 Aligned_cols=192 Identities=18% Similarity=0.111 Sum_probs=150.3
Q ss_pred cHHHHHHHHcCCHHHHHHHHhhCcC---------ccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhcccccCccCC
Q 004365 11 KKDLFKRAMKGEWKEVVKNYEKDER---------IHKVKITRSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGD 81 (759)
Q Consensus 11 ~~~L~~aa~~g~~~~v~~lL~~~~~---------~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~d 81 (759)
.++||+|+..|+...+.+++...++ ...+..|.+|+||||+||..|+.++|++|++.| ++++.+|
T Consensus 16 ~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g------~~~~~~~ 89 (285)
T 3d9h_A 16 PRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQG------WAVNIIT 89 (285)
T ss_dssp --------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTT------CCSCEEC
T ss_pred HHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCC------CCCCCcC
Confidence 6789999999999999996654221 224567899999999999999999999999987 7799999
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHHcCCcccCCCCCCCCcHHHHHHHCCCHHHHHHHHhcCCCCCCCCccccCCCCCcHHH
Q 004365 82 ERGSTPLHIAAGLGNVSMCKCIATADRKLIGERNHENETPFFLAALHGHKDAFLCLHCLCASVDDGYTYSRRNDGETILH 161 (759)
Q Consensus 82 ~~G~TpLh~Aa~~g~~eiv~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~d~~g~TpLh 161 (759)
.+|+||||+||..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+++|++++ .+.+|.||||
T Consensus 90 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~------~~~~g~t~L~ 162 (285)
T 3d9h_A 90 ADHVSPLHEACLGGHLSCVKILLKHGAQ-VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ------PESDLASPIH 162 (285)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHTTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSS------CSCTTSCHHH
T ss_pred CCCCCHHHHHHHCCcHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCC------CCCCCCCHHH
Confidence 9999999999999999999999999998 99999999999999999999999999999999987 3556999999
Q ss_pred HHHHcCCHHHHHHHHHhcCcCcccccCCCCcHHHHHHhCCCCCccCchHHHHHHHHhcCcCc
Q 004365 162 CAISGDYFDLAFQIIHLYEKLVNSVNEKGVSPLHVLATKPNAFRSGSHLGRCIGTIYHCIFV 223 (759)
Q Consensus 162 ~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~~~~~~~~~~~~~~~~Ll~~ga~~ 223 (759)
+|+..|+.+++++|++. +.+++.+|..|.||||+|+..|+ .+++++|+++|+++
T Consensus 163 ~A~~~g~~~~v~~Ll~~-g~~~~~~d~~g~t~L~~A~~~~~-------~~~v~~Ll~~ga~~ 216 (285)
T 3d9h_A 163 EAARRGHVECVNSLIAY-GGNIDHKISHLGTPLYLACENQQ-------RACVKKLLESGADV 216 (285)
T ss_dssp HHHHHTCHHHHHHHHHT-TCCTTCCBTTTBCHHHHHHHTTC-------HHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHcCc-------HHHHHHHHHCCCCC
Confidence 99999999999999994 77899999999999999999985 55555555554433
No 11
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.5e-41 Score=350.27 Aligned_cols=250 Identities=18% Similarity=0.146 Sum_probs=193.4
Q ss_pred cCCCCChHHHHHHHcCCHHHHHHHHHHhhhhc-----ccccCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCcccCCCC
Q 004365 41 ITRSGGTALHIAVSDGQEEIVEDLVRIIKEKQ-----QLEALTIGDERGSTPLHIAAGLGNVSMCKCIATADRKLIGERN 115 (759)
Q Consensus 41 ~d~~g~TpLh~Aa~~g~~~iv~~Ll~~g~~~~-----~~~~~~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~g~~~~~~~d 115 (759)
....|.|+||+|+..|+.+.+..++..+.... ....++.+|..|+||||+||..|+.+++++|+++|++ ++.+|
T Consensus 11 ~~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~-~~~~~ 89 (285)
T 3d9h_A 11 SSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWA-VNIIT 89 (285)
T ss_dssp -------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCC-SCEEC
T ss_pred cchHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcC
Confidence 36789999999999999877777776653310 1234778899999999999999999999999999998 99999
Q ss_pred CCCCcHHHHHHHCCCHHHHHHHHhcCCCCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccccCCCCcHHH
Q 004365 116 HENETPFFLAALHGHKDAFLCLHCLCASVDDGYTYSRRNDGETILHCAISGDYFDLAFQIIHLYEKLVNSVNEKGVSPLH 195 (759)
Q Consensus 116 ~~G~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh 195 (759)
..|+||||+|+..|+.++|++|+++|++++ .+|.+|.||||+|+..|+.+++++|++. +.+++.. .+|.||||
T Consensus 90 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-----~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-~~g~t~L~ 162 (285)
T 3d9h_A 90 ADHVSPLHEACLGGHLSCVKILLKHGAQVN-----GVTADWHTPLFNACVSGSWDCVNLLLQH-GASVQPE-SDLASPIH 162 (285)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHTTCCSS-----CCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCSSCS-CTTSCHHH
T ss_pred CCCCCHHHHHHHCCcHHHHHHHHHCCCCCC-----CCCCCCCCHHHHHHHcCHHHHHHHHHHC-CCCCCCC-CCCCCHHH
Confidence 999999999999999999999999999998 8999999999999999999999999995 6667754 45999999
Q ss_pred HHHhCCCCCccCchHHHHHHHHhcCcCccchhhhhhhhhhhhhhccccCCCCcchHhHHHHHHHHHHHHHHHhcCCCCcc
Q 004365 196 VLATKPNAFRSGSHLGRCIGTIYHCIFVDKLQEETSYDQYQLETSKKQTNCPENYETCLNFIRLLKTMVIVLSNRGNTKK 275 (759)
Q Consensus 196 ~Aa~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~~ll~~~~~~g~~~~ 275 (759)
+|+..|+ .+++++|+++|++++.
T Consensus 163 ~A~~~g~-------~~~v~~Ll~~g~~~~~-------------------------------------------------- 185 (285)
T 3d9h_A 163 EAARRGH-------VECVNSLIAYGGNIDH-------------------------------------------------- 185 (285)
T ss_dssp HHHHHTC-------HHHHHHHHHTTCCTTC--------------------------------------------------
T ss_pred HHHHcCC-------HHHHHHHHHCCCCCCC--------------------------------------------------
Confidence 9999985 5555555555543322
Q ss_pred ccCCCCccccCCCCCCCCCCcccccccCCCCCcCCCCCcchhhHHHHHHHHHHHHHHhcchhHHHHHHHhhhhhhhHHHH
Q 004365 276 ERDAEDPERSKGNDGTGDQGEESRHNIGAQGHQFFPPNYGTCFEFVKLVSKAMLVILGLGSTKIRKIRDKKQKHTWSVQI 355 (759)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i 355 (759)
T Consensus 186 -------------------------------------------------------------------------------- 185 (285)
T 3d9h_A 186 -------------------------------------------------------------------------------- 185 (285)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhcccceecCCCCCCCCCCCCccccccCCCcccccCCCCccccccCCCCCCCccccccccccccccccCCCCCcc
Q 004365 356 LDELLRRASLYEYDDDGGKPLRRPSSQAEEDETSPYAIVDGGDTDAVLEGYQQPDTSLTDHNVVADTHKLSRNNGKNSED 435 (759)
Q Consensus 356 v~~Ll~~~~~~~~d~~G~TpL~~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 435 (759)
T Consensus 186 -------------------------------------------------------------------------------- 185 (285)
T 3d9h_A 186 -------------------------------------------------------------------------------- 185 (285)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCCCccCCCCCCcHHHHHHHcCcHHHHHHHHHHCCcceecccCCCCcchhHHHHcCChhHHHHHHcCCCcccch
Q 004365 436 RNEGGKTGSTIPDMAKRETPILIAAKNGITEIVEKILESFPVAIHDINSEKKNIVLLAVENRQPHVYQLLLKTTIMKDSV 515 (759)
Q Consensus 436 ~~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~d~~G~TpLH~Av~~~~~~iv~~Ll~~~~~~~~~ 515 (759)
.|..|.||||+|+..|+.++|++|++. +.+++ .|..|+||||+|+..|+.+++++|+++|+ +
T Consensus 186 ------------~d~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga----d 247 (285)
T 3d9h_A 186 ------------KISHLGTPLYLACENQQRACVKKLLES-GADVN-QGKGQDSPLHAVVRTASEELACLLMDFGA----D 247 (285)
T ss_dssp ------------CBTTTBCHHHHHHHTTCHHHHHHHHHT-TCCTT-CCBTTBCHHHHHHHTTCHHHHHHHHHTTC----C
T ss_pred ------------cCCCCCCHHHHHHHcCcHHHHHHHHHC-CCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHCCC----C
Confidence 445699999999999999999999998 55566 48899999999999999999999999998 9
Q ss_pred hccccCCCCcHhHHHHhc
Q 004365 516 FRKVDDQGNSALHLAATL 533 (759)
Q Consensus 516 ~n~~D~~G~TpLh~Aa~~ 533 (759)
++.+|.+|+||||+|+..
T Consensus 248 ~~~~d~~g~t~l~~A~~~ 265 (285)
T 3d9h_A 248 TQAKNAEGKRPVELVPPE 265 (285)
T ss_dssp TTCCCTTSCCGGGGSCTT
T ss_pred CCCcCCCCCCHHHHhcCc
Confidence 999999999999999943
No 12
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=5.5e-42 Score=368.96 Aligned_cols=269 Identities=16% Similarity=0.135 Sum_probs=222.1
Q ss_pred CcCccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhcccccCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCcccC
Q 004365 33 DERIHKVKITRSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCIATADRKLIG 112 (759)
Q Consensus 33 ~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~g~~~~~ 112 (759)
.++.+.+..|.+|+||||+||..|+.++|++|+++| ++++.+|..|+||||+||..|+.++|++|+++|++ +
T Consensus 8 ~~~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g------~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~- 79 (364)
T 3ljn_A 8 FPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETG------VSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEV-H- 79 (364)
T ss_dssp --------CCHHHHHHHHHHHHHTCHHHHHHHHHTT------CCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCC-C-
T ss_pred ccCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcC------CCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCC-c-
Confidence 356777888999999999999999999999999987 78999999999999999999999999999999985 3
Q ss_pred CCCCCCCcHHHHHHHCCCHHHHHHHHhc----CCCCCC------------CCccccCCCCCcHHHHHHHcC--CHHHHHH
Q 004365 113 ERNHENETPFFLAALHGHKDAFLCLHCL----CASVDD------------GYTYSRRNDGETILHCAISGD--YFDLAFQ 174 (759)
Q Consensus 113 ~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~----ga~~~~------------~~~~~~d~~g~TpLh~A~~~g--~~~iv~~ 174 (759)
.+.+|.||||+|+..|+.++|++|+++ |++++. ...+.+|..|.||||+|+..| +.+++++
T Consensus 80 -~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~ 158 (364)
T 3ljn_A 80 -SLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKI 158 (364)
T ss_dssp -CCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHH
T ss_pred -cccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHH
Confidence 345799999999999999999999999 777661 011228889999999999999 9999999
Q ss_pred HHHhcCcCcccccCCCCcHHHHHHhCCCCCccCchHHHHHHHHhcCcCccchhhhhhhhhhhhhhccccCCCCcchHhHH
Q 004365 175 IIHLYEKLVNSVNEKGVSPLHVLATKPNAFRSGSHLGRCIGTIYHCIFVDKLQEETSYDQYQLETSKKQTNCPENYETCL 254 (759)
Q Consensus 175 Ll~~~~~~~~~~d~~G~TpLh~Aa~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~~~ 254 (759)
|++. +++++.+|..|.||||+|+..|+ .+++++|+++|++....+
T Consensus 159 Ll~~-ga~~~~~d~~g~t~L~~A~~~g~-------~~~v~~Ll~~g~~~~~~~--------------------------- 203 (364)
T 3ljn_A 159 LVQL-GASPTAKDKADETPLMRAMEFRN-------REALDLMMDTVPSKSSLR--------------------------- 203 (364)
T ss_dssp HHHH-TCCTTCCCTTSCCHHHHHHHTTC-------HHHHHHHHHHCSCSSSCC---------------------------
T ss_pred HHHc-CCCCcccCCCCCCHHHHHHHcCC-------HHHHHHHHhccccccccc---------------------------
Confidence 9996 78899999999999999999985 566666655554321100
Q ss_pred HHHHHHHHHHHHHhcCCCCccccCCCCccccCCCCCCCCCCcccccccCCCCCcCCCCCcchhhHHHHHHHHHHHHHHhc
Q 004365 255 NFIRLLKTMVIVLSNRGNTKKERDAEDPERSKGNDGTGDQGEESRHNIGAQGHQFFPPNYGTCFEFVKLVSKAMLVILGL 334 (759)
Q Consensus 255 ~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (759)
T Consensus 204 -------------------------------------------------------------------------------- 203 (364)
T 3ljn_A 204 -------------------------------------------------------------------------------- 203 (364)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhHHHHHHHhhhhhhhHHHHHHHHHHhcccceecCCCCCCCCCCCCccccccCCCcccccCCCCccccccCCCCCCCcc
Q 004365 335 GSTKIRKIRDKKQKHTWSVQILDELLRRASLYEYDDDGGKPLRRPSSQAEEDETSPYAIVDGGDTDAVLEGYQQPDTSLT 414 (759)
Q Consensus 335 g~~~~~~~~~~~~~~~~~~~iv~~Ll~~~~~~~~d~~G~TpL~~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 414 (759)
T Consensus 204 -------------------------------------------------------------------------------- 203 (364)
T 3ljn_A 204 -------------------------------------------------------------------------------- 203 (364)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccccccCCCCCccccCCCCCCCCccCCCCCCcHHHHHHHcCcHHHHHHHHHHCCcceecccCCCCcchhHHH
Q 004365 415 DHNVVADTHKLSRNNGKNSEDRNEGGKTGSTIPDMAKRETPILIAAKNGITEIVEKILESFPVAIHDINSEKKNIVLLAV 494 (759)
Q Consensus 415 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~d~~G~TpLH~Av 494 (759)
.+..|..|.||||+||..|+.++|++||++ +.+++.+|..|+||||+|+
T Consensus 204 ------------------------------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-gad~~~~d~~g~tpL~~A~ 252 (364)
T 3ljn_A 204 ------------------------------LDYANKQGNSHLHWAILINWEDVAMRFVEM-GIDVNMEDNEHTVPLYLSV 252 (364)
T ss_dssp ------------------------------TTCCCTTCCCTTHHHHTTTCHHHHHHHHTT-TCCTTCCCTTSCCHHHHHH
T ss_pred ------------------------------ccccCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHH
Confidence 011556799999999999999999999998 7778999999999999999
Q ss_pred HcCChhHHHHHHcCCCcc--------cchhccccCCCCcHhHHHHhcCCC
Q 004365 495 ENRQPHVYQLLLKTTIMK--------DSVFRKVDDQGNSALHLAATLGDH 536 (759)
Q Consensus 495 ~~~~~~iv~~Ll~~~~~~--------~~~~n~~D~~G~TpLh~Aa~~g~~ 536 (759)
..|+.++|++|+++++.. .......|..|+|||++|+..|+.
T Consensus 253 ~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~ 302 (364)
T 3ljn_A 253 RAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSK 302 (364)
T ss_dssp HTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHH
T ss_pred HhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchhhhhccCH
Confidence 999999999999998721 001123678999999999998863
No 13
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=6.6e-41 Score=346.83 Aligned_cols=261 Identities=17% Similarity=0.090 Sum_probs=193.0
Q ss_pred ccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhcccccCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCcccCCCCCC
Q 004365 38 KVKITRSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCIATADRKLIGERNHE 117 (759)
Q Consensus 38 ~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~g~~~~~~~d~~ 117 (759)
++.+|.+|+||||+||..|+.++|++|+++|++ ...++.+|..|+||||+||..|+.+++++|+++|++ ++.+|..
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~ 77 (282)
T 1oy3_D 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAG---HEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG-VLVAERG 77 (282)
T ss_dssp CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTT---SGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-SSCCCTT
T ss_pred CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCC---cccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCC
Confidence 356799999999999999999999999999842 123889999999999999999999999999999999 9999999
Q ss_pred CCcHHHHHHHCCCHHHHHHHHhcCCCCCCC--------CccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccccCC
Q 004365 118 NETPFFLAALHGHKDAFLCLHCLCASVDDG--------YTYSRRNDGETILHCAISGDYFDLAFQIIHLYEKLVNSVNEK 189 (759)
Q Consensus 118 G~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~--------~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~ 189 (759)
|+||||+|+..|+.+++++|+++|++.... ........+.++++.++..+.......++...+.+++.+|..
T Consensus 78 g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (282)
T 1oy3_D 78 GHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYD 157 (282)
T ss_dssp SCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTT
T ss_pred CCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCC
Confidence 999999999999999999999999875411 011234567889998888877666666666677889999999
Q ss_pred CCcHHHHHHhCCCCCccCchHHHHHHHHhcCcCccchhhhhhhhhhhhhhccccCCCCcchHhHHHHHHHHHHHHHHHhc
Q 004365 190 GVSPLHVLATKPNAFRSGSHLGRCIGTIYHCIFVDKLQEETSYDQYQLETSKKQTNCPENYETCLNFIRLLKTMVIVLSN 269 (759)
Q Consensus 190 G~TpLh~Aa~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~~ll~~~~~ 269 (759)
|.||||+|+..|+ .+++++|+++|++++..+
T Consensus 158 g~t~L~~A~~~g~-------~~~v~~Ll~~g~~~~~~~------------------------------------------ 188 (282)
T 1oy3_D 158 GHTPLHVAVIHKD-------AEMVRLLRDAGADLNKPE------------------------------------------ 188 (282)
T ss_dssp SCCHHHHHHHTTC-------HHHHHHHHHHTCCTTCCC------------------------------------------
T ss_pred CcCHHHHHHHcCC-------HHHHHHHHHcCCCCCCCC------------------------------------------
Confidence 9999999999985 666666666555443211
Q ss_pred CCCCccccCCCCccccCCCCCCCCCCcccccccCCCCCcCCCCCcchhhHHHHHHHHHHHHHHhcchhHHHHHHHhhhhh
Q 004365 270 RGNTKKERDAEDPERSKGNDGTGDQGEESRHNIGAQGHQFFPPNYGTCFEFVKLVSKAMLVILGLGSTKIRKIRDKKQKH 349 (759)
Q Consensus 270 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 349 (759)
T Consensus 189 -------------------------------------------------------------------------------- 188 (282)
T 1oy3_D 189 -------------------------------------------------------------------------------- 188 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHHHhcccceecCCCCCCCCCCCCccccccCCCcccccCCCCccccccCCCCCCCccccccccccccccccC
Q 004365 350 TWSVQILDELLRRASLYEYDDDGGKPLRRPSSQAEEDETSPYAIVDGGDTDAVLEGYQQPDTSLTDHNVVADTHKLSRNN 429 (759)
Q Consensus 350 ~~~~~iv~~Ll~~~~~~~~d~~G~TpL~~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 429 (759)
T Consensus 189 -------------------------------------------------------------------------------- 188 (282)
T 1oy3_D 189 -------------------------------------------------------------------------------- 188 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccccCCCCCCCCccCCCCCCcHHHHHHHcCcHHHHHHHHHHCCcceecccCCCCcchhHHHHcCChhHHHHHHcCC
Q 004365 430 GKNSEDRNEGGKTGSTIPDMAKRETPILIAAKNGITEIVEKILESFPVAIHDINSEKKNIVLLAVENRQPHVYQLLLKTT 509 (759)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~d~~G~TpLH~Av~~~~~~iv~~Ll~~~ 509 (759)
+..|.||||+|+..|+.++|++||++ +.+++.+|..|+||||+|+.+|+.+++++|+++|
T Consensus 189 -------------------~~~g~tpL~~A~~~~~~~~v~~Ll~~-gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g 248 (282)
T 1oy3_D 189 -------------------PTCGRTPLHLAVEAQAASVLELLLKA-GADPTARMYGGRTPLGSALLRPNPILARLLRAHG 248 (282)
T ss_dssp -------------------TTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTT
T ss_pred -------------------CCCCcCHHHHHHHcCCHHHHHHHHHc-CCCCcccccCCCCHHHHHHHcCCcHHHHHHHHcC
Confidence 13499999999999999999999998 7888999999999999999999999999999999
Q ss_pred CcccchhccccCCCCcHhHHHHhcCC
Q 004365 510 IMKDSVFRKVDDQGNSALHLAATLGD 535 (759)
Q Consensus 510 ~~~~~~~n~~D~~G~TpLh~Aa~~g~ 535 (759)
+ +++.+|.+|.|||++|....+
T Consensus 249 a----~~~~~~~~g~tpl~~a~~~~~ 270 (282)
T 1oy3_D 249 A----PEPEDGGDKLSPCSSSGSDSD 270 (282)
T ss_dssp C----CCCCCC---------------
T ss_pred C----CcCcCCCcccccccccCCccc
Confidence 8 999999999999999998765
No 14
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=1.1e-40 Score=339.32 Aligned_cols=167 Identities=24% Similarity=0.227 Sum_probs=113.8
Q ss_pred cccccCCCCChHHHHHHHcC-------------CHHHHHHHHHHhhhhcccccC-ccCCCCCChHHHHHHHcCCHHHHHH
Q 004365 37 HKVKITRSGGTALHIAVSDG-------------QEEIVEDLVRIIKEKQQLEAL-TIGDERGSTPLHIAAGLGNVSMCKC 102 (759)
Q Consensus 37 ~~~~~d~~g~TpLh~Aa~~g-------------~~~iv~~Ll~~g~~~~~~~~~-~~~d~~G~TpLh~Aa~~g~~eiv~~ 102 (759)
++|.+|.+|+||||+||..| +.+++++|++.| .++ +..|..|+||||+||..|+.+++++
T Consensus 2 dvn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g------~~~~~~~d~~g~t~L~~A~~~g~~~~v~~ 75 (253)
T 1yyh_A 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQG------ASLHNQTDRTGETALHLAARYSRSDAAKR 75 (253)
T ss_dssp --------------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred CCCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHcc------CCcccccCCCCCcHHHHHHHcCCHHHHHH
Confidence 57788999999999999987 899999999987 344 4458899999999999999999999
Q ss_pred HHHcCCcccCCCCCCCCcHHHHHHHCCCHHHHHHHHhcCC-CCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCc
Q 004365 103 IATADRKLIGERNHENETPFFLAALHGHKDAFLCLHCLCA-SVDDGYTYSRRNDGETILHCAISGDYFDLAFQIIHLYEK 181 (759)
Q Consensus 103 Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~ga-~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~ 181 (759)
|+++|++ ++.+|..|+||||+|+..|+.+++++|+++|+ +++ .+|..|.||||+|+..|+.+++++|++ .+.
T Consensus 76 Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~-----~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~ 148 (253)
T 1yyh_A 76 LLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLD-----ARMHDGTTPLILAARLAVEGMLEDLIN-SHA 148 (253)
T ss_dssp HHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTT-----CCCTTCCCHHHHHHHHTCSSHHHHHHH-TTC
T ss_pred HHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcc-----ccCCCCCcHHHHHHHcChHHHHHHHHH-cCC
Confidence 9999988 89999999999999999999999999999987 776 788999999999999999999999998 477
Q ss_pred CcccccCCCCcHHHHHHhCCCCCccCchHHHHHHHHhcCcCc
Q 004365 182 LVNSVNEKGVSPLHVLATKPNAFRSGSHLGRCIGTIYHCIFV 223 (759)
Q Consensus 182 ~~~~~d~~G~TpLh~Aa~~~~~~~~~~~~~~~~~Ll~~ga~~ 223 (759)
+++.+|..|.||||+|+..|+ .+++++|+++|+++
T Consensus 149 ~~~~~d~~g~t~L~~A~~~~~-------~~~v~~Ll~~ga~~ 183 (253)
T 1yyh_A 149 DVNAVDDLGKSALHWAAAVNN-------VDAAVVLLKNGANK 183 (253)
T ss_dssp CTTCBCTTSCBHHHHHHHHTC-------HHHHHHHHHTTCCT
T ss_pred CCCCcCCCCCCHHHHHHHcCC-------HHHHHHHHHcCCCC
Confidence 899999999999999998885 55666665555544
No 15
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=9.1e-41 Score=339.98 Aligned_cols=224 Identities=20% Similarity=0.138 Sum_probs=170.0
Q ss_pred cCccCCCCCChHHHHHHHcC-------------CHHHHHHHHHcCCcccCCCCCCCCcHHHHHHHCCCHHHHHHHHhcCC
Q 004365 76 ALTIGDERGSTPLHIAAGLG-------------NVSMCKCIATADRKLIGERNHENETPFFLAALHGHKDAFLCLHCLCA 142 (759)
Q Consensus 76 ~~~~~d~~G~TpLh~Aa~~g-------------~~eiv~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~ga 142 (759)
|+|.+|.+|+||||+|+..| +.+++++|+++|++..+.+|..|+||||+|+..|+.++|++|+++|+
T Consensus 2 dvn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~ 81 (253)
T 1yyh_A 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASA 81 (253)
T ss_dssp --------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CCCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence 58899999999999999987 89999999999999666779999999999999999999999999999
Q ss_pred CCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccccCCCCcHHHHHHhCCCCCccCchHHHHHHHHhcCcC
Q 004365 143 SVDDGYTYSRRNDGETILHCAISGDYFDLAFQIIHLYEKLVNSVNEKGVSPLHVLATKPNAFRSGSHLGRCIGTIYHCIF 222 (759)
Q Consensus 143 ~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~~~~~~~~~~~~~~~~Ll~~ga~ 222 (759)
+++ .+|..|.||||+|+..|+.+++++|++.++.+++..|..|.||||+|+..++ .+++++|+++|++
T Consensus 82 ~~~-----~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~-------~~~v~~Ll~~g~~ 149 (253)
T 1yyh_A 82 DAN-----IQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAV-------EGMLEDLINSHAD 149 (253)
T ss_dssp CTT-----CCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTC-------SSHHHHHHHTTCC
T ss_pred CCC-----CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcCh-------HHHHHHHHHcCCC
Confidence 999 8999999999999999999999999997766899999999999999999885 5566666655554
Q ss_pred ccchhhhhhhhhhhhhhccccCCCCcchHhHHHHHHHHHHHHHHHhcCCCCccccCCCCccccCCCCCCCCCCccccccc
Q 004365 223 VDKLQEETSYDQYQLETSKKQTNCPENYETCLNFIRLLKTMVIVLSNRGNTKKERDAEDPERSKGNDGTGDQGEESRHNI 302 (759)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (759)
++.
T Consensus 150 ~~~----------------------------------------------------------------------------- 152 (253)
T 1yyh_A 150 VNA----------------------------------------------------------------------------- 152 (253)
T ss_dssp TTC-----------------------------------------------------------------------------
T ss_pred CCC-----------------------------------------------------------------------------
Confidence 432
Q ss_pred CCCCCcCCCCCcchhhHHHHHHHHHHHHHHhcchhHHHHHHHhhhhhhhHHHHHHHHHHhcccceecCCCCCCCCCCCCc
Q 004365 303 GAQGHQFFPPNYGTCFEFVKLVSKAMLVILGLGSTKIRKIRDKKQKHTWSVQILDELLRRASLYEYDDDGGKPLRRPSSQ 382 (759)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~iv~~Ll~~~~~~~~d~~G~TpL~~a~~~ 382 (759)
T Consensus 153 -------------------------------------------------------------------------------- 152 (253)
T 1yyh_A 153 -------------------------------------------------------------------------------- 152 (253)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCcccccCCCCccccccCCCCCCCccccccccccccccccCCCCCccccCCCCCCCCccCCCCCCcHHHHHHHc
Q 004365 383 AEEDETSPYAIVDGGDTDAVLEGYQQPDTSLTDHNVVADTHKLSRNNGKNSEDRNEGGKTGSTIPDMAKRETPILIAAKN 462 (759)
Q Consensus 383 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~d~~g~TpLh~Aa~~ 462 (759)
.|.+|.||||+|+..
T Consensus 153 -----------------------------------------------------------------~d~~g~t~L~~A~~~ 167 (253)
T 1yyh_A 153 -----------------------------------------------------------------VDDLGKSALHWAAAV 167 (253)
T ss_dssp -----------------------------------------------------------------BCTTSCBHHHHHHHH
T ss_pred -----------------------------------------------------------------cCCCCCCHHHHHHHc
Confidence 345699999999999
Q ss_pred CcHHHHHHHHHHCCcceecccCCCCcchhHHHHcCChhHHHHHHcCCCcccchhccccCCCCcHhHHHHhcCCCCc
Q 004365 463 GITEIVEKILESFPVAIHDINSEKKNIVLLAVENRQPHVYQLLLKTTIMKDSVFRKVDDQGNSALHLAATLGDHKP 538 (759)
Q Consensus 463 g~~eiv~~LL~~~~~~~~~~d~~G~TpLH~Av~~~~~~iv~~Ll~~~~~~~~~~n~~D~~G~TpLh~Aa~~g~~~~ 538 (759)
|+.+++++|+++ +.+++.+|..|+||||+|+.+|+.+++++|+++|+ +++.+|..|+||||+|++.|+.++
T Consensus 168 ~~~~~v~~Ll~~-ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga----~~~~~d~~g~tpl~~A~~~g~~~i 238 (253)
T 1yyh_A 168 NNVDAAVVLLKN-GANKDMQNNREETPLFLAAREGSYETAKVLLDHFA----NRDITDHMDRLPRDIAQERMHHDI 238 (253)
T ss_dssp TCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC----CTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCC----CccccccCCCCHHHHHHHcCCHHH
Confidence 999999999998 77788999999999999999999999999999998 899999999999999999999554
No 16
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=2.8e-39 Score=325.62 Aligned_cols=221 Identities=19% Similarity=0.251 Sum_probs=183.6
Q ss_pred ccCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCcccCCCCCCCCcHHHHHHHCCCHHHHHHHHhcCCCCCCCCccccCC
Q 004365 75 EALTIGDERGSTPLHIAAGLGNVSMCKCIATADRKLIGERNHENETPFFLAALHGHKDAFLCLHCLCASVDDGYTYSRRN 154 (759)
Q Consensus 75 ~~~~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~d~ 154 (759)
.+++.+|.+|+||||+||..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+++|++++ .+|.
T Consensus 2 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-----~~~~ 75 (237)
T 3b7b_A 2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGAN-IDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVD-----PKDA 75 (237)
T ss_dssp CCCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCC-----CCCT
T ss_pred CCcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCC-cCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCC-----CCCC
Confidence 35777888888888888888888888888888887 78888888888888888888888888888888887 7888
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHhcCcCcccccCCCCcHHHHHHhCCCCCccCchHHHHHHHHhcCcCccchhhhhhhhh
Q 004365 155 DGETILHCAISGDYFDLAFQIIHLYEKLVNSVNEKGVSPLHVLATKPNAFRSGSHLGRCIGTIYHCIFVDKLQEETSYDQ 234 (759)
Q Consensus 155 ~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~ 234 (759)
.|.||||+|+..|+.+++++|++.++.+++..|..|.||||+|+..++ .+++++|+++|++++.
T Consensus 76 ~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~-------~~~~~~Ll~~g~~~~~--------- 139 (237)
T 3b7b_A 76 EGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKH-------VDLVKLLLSKGSDINI--------- 139 (237)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTC-------HHHHHHHHHTTCCTTC---------
T ss_pred CCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCC-------HHHHHHHHHCCCCCCc---------
Confidence 888888888888888888888886657788888888888888888874 4555555444443321
Q ss_pred hhhhhccccCCCCcchHhHHHHHHHHHHHHHHHhcCCCCccccCCCCccccCCCCCCCCCCcccccccCCCCCcCCCCCc
Q 004365 235 YQLETSKKQTNCPENYETCLNFIRLLKTMVIVLSNRGNTKKERDAEDPERSKGNDGTGDQGEESRHNIGAQGHQFFPPNY 314 (759)
Q Consensus 235 ~~~~~~~~~~~~p~~~a~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (759)
T Consensus 140 -------------------------------------------------------------------------------- 139 (237)
T 3b7b_A 140 -------------------------------------------------------------------------------- 139 (237)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhhHHHHHHHHHHHHHHhcchhHHHHHHHhhhhhhhHHHHHHHHHHhcccceecCCCCCCCCCCCCccccccCCCcccc
Q 004365 315 GTCFEFVKLVSKAMLVILGLGSTKIRKIRDKKQKHTWSVQILDELLRRASLYEYDDDGGKPLRRPSSQAEEDETSPYAIV 394 (759)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~iv~~Ll~~~~~~~~d~~G~TpL~~a~~~~~~~~~~~~~~~ 394 (759)
T Consensus 140 -------------------------------------------------------------------------------- 139 (237)
T 3b7b_A 140 -------------------------------------------------------------------------------- 139 (237)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCccccccCCCCCCCccccccccccccccccCCCCCccccCCCCCCCCccCCCCCCcHHHHHHHcCcHHHHHHHHHH
Q 004365 395 DGGDTDAVLEGYQQPDTSLTDHNVVADTHKLSRNNGKNSEDRNEGGKTGSTIPDMAKRETPILIAAKNGITEIVEKILES 474 (759)
Q Consensus 395 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiv~~LL~~ 474 (759)
.|..|.||||+|+..|+.+++++|+++
T Consensus 140 -----------------------------------------------------~~~~g~t~L~~A~~~~~~~~~~~Ll~~ 166 (237)
T 3b7b_A 140 -----------------------------------------------------RDNEENICLHWAAFSGCVDIAEILLAA 166 (237)
T ss_dssp -----------------------------------------------------CCTTSCCHHHHHHHHCCHHHHHHHHTT
T ss_pred -----------------------------------------------------cCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence 345588999999999999999999987
Q ss_pred CCcceecccCCCCcchhHHHHcCChhHHHHHHcCCCcccchhccccCCCCcHhHHHHhcCC
Q 004365 475 FPVAIHDINSEKKNIVLLAVENRQPHVYQLLLKTTIMKDSVFRKVDDQGNSALHLAATLGD 535 (759)
Q Consensus 475 ~~~~~~~~d~~G~TpLH~Av~~~~~~iv~~Ll~~~~~~~~~~n~~D~~G~TpLh~Aa~~g~ 535 (759)
+.+++.+|..|+||||+|+++|+.+++++|+++|+ +++.+|++|+||||+|+..|+
T Consensus 167 -g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga----d~~~~d~~g~t~l~~A~~~~~ 222 (237)
T 3b7b_A 167 -KCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDS----DVTLKNKEGETPLQCASLNSQ 222 (237)
T ss_dssp -TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTC----CTTCCCTTSCCHHHHSCTTCH
T ss_pred -CCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCC----CCCccCCCCCCHHHHHHHHHH
Confidence 66778889999999999999999999999999998 889999999999999999887
No 17
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=2.6e-39 Score=344.20 Aligned_cols=283 Identities=20% Similarity=0.140 Sum_probs=243.1
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHHHhhhhcccccCccCCC-CCChHHHHHHHcCCHHHHHHHHHcCCcccCCCCCCCCc
Q 004365 42 TRSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDE-RGSTPLHIAAGLGNVSMCKCIATADRKLIGERNHENET 120 (759)
Q Consensus 42 d~~g~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~d~-~G~TpLh~Aa~~g~~eiv~~Ll~~g~~~~~~~d~~G~T 120 (759)
+.+|.||||.||+.|+.++|++||++| +++|.+|. .|+||||+||..|+.++|++|+++|++ ++.++..+.|
T Consensus 22 ~~~~~t~L~~Av~~g~~~~V~~LL~~G------advn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~-~~~~~~~~~~ 94 (337)
T 4g8k_A 22 AVEDNHLLIKAVQNEDVDLVQQLLEGG------ANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD-PVLRKKNGAT 94 (337)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHT------CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCC
T ss_pred CCCCChHHHHHHHcCCHHHHHHHHHCC------CCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCc-hhhhccCCCc
Confidence 445889999999999999999999998 78888876 499999999999999999999999999 9999999999
Q ss_pred HHHHHHHCCCHHHHHHHHhcCCCCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCccc----------ccCCC
Q 004365 121 PFFLAALHGHKDAFLCLHCLCASVDDGYTYSRRNDGETILHCAISGDYFDLAFQIIHLYEKLVNS----------VNEKG 190 (759)
Q Consensus 121 pLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~----------~d~~G 190 (759)
|++.++..++.+++..+++.+++++ .+|..|.||||+|+..|+.+++++|+++ +++++. .+..|
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~d~~g~t~l~~A~~~~~~~~~~~ll~~-ga~~~~~~~~~~~~~~~~~~g 168 (337)
T 4g8k_A 95 PFILAAIAGSVKLLKLFLSKGADVN-----ECDFYGFTAFMEAAVYGKVKALKFLYKR-GANVNLRRKTKEDQERLRKGG 168 (337)
T ss_dssp HHHHHHHHTCHHHHHHHHTTTCCTT-----CBCTTCCBHHHHHHHTTCHHHHHHHHHT-TCCTTCCCCCC-----CTTCS
T ss_pred hhHHHHhcccchhhHHhhhccchhh-----hhccCCCCHHHHHHHcCcHHHHHHHHHc-CCCcchhhccccccccccCCC
Confidence 9999999999999999999999999 8999999999999999999999999995 665654 35579
Q ss_pred CcHHHHHHhCCCCCccCchHHHHHHHHh-cCcCccchhhhhhhhhhhhhhccccCCCCcchHhHHHHHHHHHHHHHHHhc
Q 004365 191 VSPLHVLATKPNAFRSGSHLGRCIGTIY-HCIFVDKLQEETSYDQYQLETSKKQTNCPENYETCLNFIRLLKTMVIVLSN 269 (759)
Q Consensus 191 ~TpLh~Aa~~~~~~~~~~~~~~~~~Ll~-~ga~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~~ll~~~~~ 269 (759)
.||||+|+..|+ .+++++|++ .|++++..+. .|++|++++.....
T Consensus 169 ~T~L~~A~~~g~-------~~~v~~LL~~~gad~n~~d~--------------~g~t~l~~~~~~~~------------- 214 (337)
T 4g8k_A 169 ATALMDAAEKGH-------VEVLKILLDEMGADVNACDN--------------MGRNALIHALLSSD------------- 214 (337)
T ss_dssp CCHHHHHHHHTC-------HHHHHHHHHHSCCCTTCCCT--------------TSCCHHHHHHHHSC-------------
T ss_pred CcHHHHHHHCCC-------HHHHHHHHhccCCCcCccCC--------------CCCcHHHHHHHHcC-------------
Confidence 999999999995 999999996 5999988764 44555544322100
Q ss_pred CCCCccccCCCCccccCCCCCCCCCCcccccccCCCCCcCCCCCcchhhHHHHHHHHHHHHHHhcchhHHHHHHHhhhhh
Q 004365 270 RGNTKKERDAEDPERSKGNDGTGDQGEESRHNIGAQGHQFFPPNYGTCFEFVKLVSKAMLVILGLGSTKIRKIRDKKQKH 349 (759)
Q Consensus 270 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 349 (759)
.
T Consensus 215 -------------------------------------------------------------------------------~ 215 (337)
T 4g8k_A 215 -------------------------------------------------------------------------------D 215 (337)
T ss_dssp -------------------------------------------------------------------------------T
T ss_pred -------------------------------------------------------------------------------c
Confidence 0
Q ss_pred hhHHHHHHHHHHhcccceecCCCCCCCCCCCCccccccCCCcccccCCCCccccccCCCCCCCccccccccccccccccC
Q 004365 350 TWSVQILDELLRRASLYEYDDDGGKPLRRPSSQAEEDETSPYAIVDGGDTDAVLEGYQQPDTSLTDHNVVADTHKLSRNN 429 (759)
Q Consensus 350 ~~~~~iv~~Ll~~~~~~~~d~~G~TpL~~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 429 (759)
....+++++|++++...
T Consensus 216 ~~~~~i~~lLl~~gad~--------------------------------------------------------------- 232 (337)
T 4g8k_A 216 SDVEAITHLLLDHGADV--------------------------------------------------------------- 232 (337)
T ss_dssp TTHHHHHHHHHHTTCCT---------------------------------------------------------------
T ss_pred ccHHHHHHHHHHCCCCC---------------------------------------------------------------
Confidence 00136778888874211
Q ss_pred CCCCccccCCCCCCCCccCCCCCCcHHHHHHHcCcHHHHHHHHHHCCcceecccCCCCcchhHHHHcCChhHHHHHHcCC
Q 004365 430 GKNSEDRNEGGKTGSTIPDMAKRETPILIAAKNGITEIVEKILESFPVAIHDINSEKKNIVLLAVENRQPHVYQLLLKTT 509 (759)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~d~~G~TpLH~Av~~~~~~iv~~Ll~~~ 509 (759)
+.+|.+|+||||+|+..|+.++|+.|++..+.+++.+|.+|+||||+|+++|+.++|++|+++|
T Consensus 233 ----------------n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~G 296 (337)
T 4g8k_A 233 ----------------NVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRG 296 (337)
T ss_dssp ----------------TCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTS
T ss_pred ----------------CCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence 1167889999999999999999999999888899999999999999999999999999999999
Q ss_pred CcccchhccccCCCCcHhHHHHhcCCCCc
Q 004365 510 IMKDSVFRKVDDQGNSALHLAATLGDHKP 538 (759)
Q Consensus 510 ~~~~~~~n~~D~~G~TpLh~Aa~~g~~~~ 538 (759)
+ ++| +.||||+|++.|+.++
T Consensus 297 A----d~n-----~~~~L~~A~~~~~~~i 316 (337)
T 4g8k_A 297 A----STD-----CGDLVMTARRNYDHSL 316 (337)
T ss_dssp C----SST-----TCCHHHHHHHTTCHHH
T ss_pred C----CCC-----CCCHHHHHHHcCCHHH
Confidence 8 554 4569999999999554
No 18
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=1.3e-39 Score=328.80 Aligned_cols=173 Identities=24% Similarity=0.239 Sum_probs=147.0
Q ss_pred cccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhcccccCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCcccCCCCCCC
Q 004365 39 VKITRSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCIATADRKLIGERNHEN 118 (759)
Q Consensus 39 ~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~g~~~~~~~d~~G 118 (759)
+.+|.+|+||||+||..|+.++|++|++...+ .+.+++.+|..|+||||+|+..|+.+++++|+++|++ ++.+|..|
T Consensus 3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~--~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g 79 (241)
T 1k1a_A 3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQ--GGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGAS-PMALDRHG 79 (241)
T ss_dssp ----CTTCCHHHHHHHTTCHHHHHHHHHHHHH--TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTS
T ss_pred cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHh--cCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCC
Confidence 45799999999999999999999999984321 2378999999999999999999999999999999998 89999999
Q ss_pred CcHHHHHHHCCCHHHHHHHHhcCCCCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCccccc-CCCCcHHHHH
Q 004365 119 ETPFFLAALHGHKDAFLCLHCLCASVDDGYTYSRRNDGETILHCAISGDYFDLAFQIIHLYEKLVNSVN-EKGVSPLHVL 197 (759)
Q Consensus 119 ~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d-~~G~TpLh~A 197 (759)
+||||+|+..|+.+++++|+++++... .+.+.+|..|.||||+|+..|+.+++++|++. +.+++..+ ..|.||||+|
T Consensus 80 ~t~l~~A~~~~~~~~~~~Ll~~~~~~~-~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~~g~t~L~~A 157 (241)
T 1k1a_A 80 QTAAHLACEHRSPTCLRALLDSAAPGT-LDLEARNYDGLTALHVAVNTECQETVQLLLER-GADIDAVDIKSGRSPLIHA 157 (241)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHSCTTS-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTTCCCHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCcc-ccccccCcCCCcHHHHHHHcCCHHHHHHHHHc-CCCcccccccCCCcHHHHH
Confidence 999999999999999999999998221 12238899999999999999999999999995 77799888 8899999999
Q ss_pred HhCCCCCccCchHHHHHHHHhcCcCc
Q 004365 198 ATKPNAFRSGSHLGRCIGTIYHCIFV 223 (759)
Q Consensus 198 a~~~~~~~~~~~~~~~~~Ll~~ga~~ 223 (759)
+..|+ .+++++|+++|+++
T Consensus 158 ~~~~~-------~~~v~~Ll~~g~~~ 176 (241)
T 1k1a_A 158 VENNS-------LSMVQLLLQHGANV 176 (241)
T ss_dssp HHTTC-------HHHHHHHHHTTCCT
T ss_pred HHcCC-------HHHHHHHHHcCCCC
Confidence 99985 56666666555544
No 19
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=2e-39 Score=331.57 Aligned_cols=190 Identities=17% Similarity=0.089 Sum_probs=174.4
Q ss_pred cHHHHHHHHcCCHHHHHHHHhhCcCccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhcccccCccCCCCCChHHHH
Q 004365 11 KKDLFKRAMKGEWKEVVKNYEKDERIHKVKITRSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHI 90 (759)
Q Consensus 11 ~~~L~~aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~d~~G~TpLh~ 90 (759)
.++||.|+..|+.+.++.++.. +++++..|.+|+||||+||..|+.++|++|+++| ++++.+|.+|+||||+
T Consensus 4 ~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g------~~~~~~~~~g~t~L~~ 75 (261)
T 2xai_A 4 WSPMHEAAIHGHQLSLRNLISQ--GWAVNIITADHVSPLHEACLGGHLSCVKILLKHG------AQVNGVTADWHTPLFN 75 (261)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHT--TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTT------CCTTCCCTTSCCHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHC--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCC------CCCCCCCCCCCCHHHH
Confidence 5899999999999999999987 7889999999999999999999999999999987 7899999999999999
Q ss_pred HHHcCCHHHHHHHHHcCCcccCCCCCCCCcHHHHHHHCCCHHHHHHHHhcCCCCCCCCccccCCCCCcHHHHHHHcCCHH
Q 004365 91 AAGLGNVSMCKCIATADRKLIGERNHENETPFFLAALHGHKDAFLCLHCLCASVDDGYTYSRRNDGETILHCAISGDYFD 170 (759)
Q Consensus 91 Aa~~g~~eiv~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~d~~g~TpLh~A~~~g~~~ 170 (759)
|+..|+.+++++|+++|++ ++. +..|.||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+
T Consensus 76 A~~~~~~~~v~~Ll~~g~~-~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-----~~~~~g~t~L~~A~~~~~~~ 148 (261)
T 2xai_A 76 ACVSGSWDCVNLLLQHGAS-VQP-ESDLASPIHEAARRGHVECVNSLIAYGGNID-----HKISHLGTPLYLACENQQRA 148 (261)
T ss_dssp HHHHTCHHHHHHHHHTTCC-SSC-SCTTCCHHHHHHHTTCHHHHHHHHHTTCCTT-----CCBTTTBCHHHHHHHTTCHH
T ss_pred HHHcCCHHHHHHHHHCCCC-CCC-CCCCCCHHHHHHHcCcHHHHHHHHHcCCCCC-----cCCCCCCCHHHHHHHhCCHH
Confidence 9999999999999999998 664 4569999999999999999999999999999 89999999999999999999
Q ss_pred HHHHHHHhcCcCcccccCCCCcHHHHHHhCCCCCccCchHHHHHHHHhcCcCcc
Q 004365 171 LAFQIIHLYEKLVNSVNEKGVSPLHVLATKPNAFRSGSHLGRCIGTIYHCIFVD 224 (759)
Q Consensus 171 iv~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~~~~~~~~~~~~~~~~Ll~~ga~~~ 224 (759)
++++|++. +++++. |..|.||||+|+..++ .+++++|+++|++++
T Consensus 149 ~v~~Ll~~-g~~~~~-~~~g~t~Lh~A~~~~~-------~~~v~~Ll~~gad~~ 193 (261)
T 2xai_A 149 CVKKLLES-GADVNQ-GKGQDSPLHAVARTAS-------EELACLLMDFGADTQ 193 (261)
T ss_dssp HHHHHHHH-TCCTTC-CBTTBCHHHHHHHHTC-------HHHHHHHHHTTCCTT
T ss_pred HHHHHHHc-CCCCCC-CCCCCChHHHHHHcCC-------HHHHHHHHHcCCCCC
Confidence 99999995 777885 8999999999999985 666666666666553
No 20
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=2.1e-40 Score=357.14 Aligned_cols=180 Identities=18% Similarity=0.130 Sum_probs=153.9
Q ss_pred cHHHHHHHHcCCHHHHHHHHhhCcCccccccC-CCCChHHHHHHHcCCHHHHHHHHHHhhh--hcccccCccCCCCCChH
Q 004365 11 KKDLFKRAMKGEWKEVVKNYEKDERIHKVKIT-RSGGTALHIAVSDGQEEIVEDLVRIIKE--KQQLEALTIGDERGSTP 87 (759)
Q Consensus 11 ~~~L~~aa~~g~~~~v~~lL~~~~~~~~~~~d-~~g~TpLh~Aa~~g~~~iv~~Ll~~g~~--~~~~~~~~~~d~~G~Tp 87 (759)
.++||.||..+ .+.+.. |.. .+++..| ..|+||||+||..|+.++|++|+..... ...++++|.+|.+|+||
T Consensus 95 ~t~L~~Aa~~~-~~~~~~-L~~---~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~Tp 169 (373)
T 2fo1_E 95 PIKLHTEAAGS-YAITEP-ITR---ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTP 169 (373)
T ss_dssp CCHHHHHHHSS-SCCCSC-CST---TTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCH
T ss_pred ccHHHHHhcCC-chHHHH-hcc---ccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCH
Confidence 56788888844 444443 333 3567777 7999999999999999988888732110 01238899999999999
Q ss_pred HHHHHHcCCHHHHHHHHHcCCcccCCCCCCCCcHHHHHHHCCCHHHHHHHHhcC---CCCCCCCccccCCCCCcHHHHHH
Q 004365 88 LHIAAGLGNVSMCKCIATADRKLIGERNHENETPFFLAALHGHKDAFLCLHCLC---ASVDDGYTYSRRNDGETILHCAI 164 (759)
Q Consensus 88 Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g---a~~~~~~~~~~d~~g~TpLh~A~ 164 (759)
||+||..|+.++|++|+++|++ ++.+|..|.||||+|+..|+.+++++|++++ ++++ .+|.+|.||||+|+
T Consensus 170 L~~A~~~g~~~iv~~Ll~~ga~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-----~~d~~g~t~L~~A~ 243 (373)
T 2fo1_E 170 LMLAVLARRRRLVAYLMKAGAD-PTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIE-----ELDRNGMTALMIVA 243 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCC-SCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTS-----CCCTTSCCHHHHHH
T ss_pred HHHHHHcChHHHHHHHHHCCCC-CcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChh-----hcCCCCCCHHHHHH
Confidence 9999999999999999999999 9999999999999999999999999999998 7888 89999999999999
Q ss_pred HcC---CHHHHHHHHHhcCcCccc--------ccCCCCcHHHHHHhCCC
Q 004365 165 SGD---YFDLAFQIIHLYEKLVNS--------VNEKGVSPLHVLATKPN 202 (759)
Q Consensus 165 ~~g---~~~iv~~Ll~~~~~~~~~--------~d~~G~TpLh~Aa~~~~ 202 (759)
..+ +.+++++|++. +.+++. .|..|.||||+|+..|+
T Consensus 244 ~~~~~~~~~~v~~Ll~~-g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~ 291 (373)
T 2fo1_E 244 HNEGRDQVASAKLLVEK-GAKVDYDGAARKDSEKYKGRTALHYAAQVSN 291 (373)
T ss_dssp HSCSTTHHHHHHHHHHH-TCCSSCCSGGGTSSSSCCCCCTHHHHHSSCC
T ss_pred HhCCcchHHHHHHHHHC-CCCcccccccccCcccccCCCHHHHHHHhCC
Confidence 998 89999999995 666775 67799999999999985
No 21
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=1.2e-39 Score=350.66 Aligned_cols=190 Identities=19% Similarity=0.144 Sum_probs=173.0
Q ss_pred cHHHHHHHHcCCHHHHHHHHhhCcCccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhcccccCccCCCCCChHHHH
Q 004365 11 KKDLFKRAMKGEWKEVVKNYEKDERIHKVKITRSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHI 90 (759)
Q Consensus 11 ~~~L~~aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~d~~G~TpLh~ 90 (759)
.++||.||..|+.+.|+.||.. +++++..|..|+||||+||..|+.++|++|+++| + +..+.+|+||||+
T Consensus 21 ~t~L~~Aa~~g~~~~v~~Ll~~--g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g------~--~~~~~~g~t~L~~ 90 (364)
T 3ljn_A 21 MEKIHVAARKGQTDEVRRLIET--GVSPTIQNRFGCTALHLACKFGCVDTAKYLASVG------E--VHSLWHGQKPIHL 90 (364)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHC------C--CCCCBTTBCHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHc--CCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCC------C--CccccCCCCHHHH
Confidence 7889999999999999999987 7899999999999999999999999999999997 3 3334589999999
Q ss_pred HHHcCCHHHHHHHHHc----CCcccCC-----------------CCCCCCcHHHHHHHCC--CHHHHHHHHhcCCCCCCC
Q 004365 91 AAGLGNVSMCKCIATA----DRKLIGE-----------------RNHENETPFFLAALHG--HKDAFLCLHCLCASVDDG 147 (759)
Q Consensus 91 Aa~~g~~eiv~~Ll~~----g~~~~~~-----------------~d~~G~TpLh~Aa~~g--~~~iv~~Ll~~ga~~~~~ 147 (759)
|+..|+.+++++|+++ +++ ++. +|..|.||||+|+..| +.++|++|+++|++++
T Consensus 91 A~~~g~~~~v~~Ll~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~-- 167 (364)
T 3ljn_A 91 AVMANKTDLVVALVEGAKERGQM-PESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPT-- 167 (364)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCC-HHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTT--
T ss_pred HHHcCCHHHHHHHHHhccccCCC-HHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCc--
Confidence 9999999999999999 766 555 8899999999999999 9999999999999999
Q ss_pred CccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCcC-----cccccCCCCcHHHHHHhCCCCCccCchHHHHHHHHhcCcC
Q 004365 148 YTYSRRNDGETILHCAISGDYFDLAFQIIHLYEKL-----VNSVNEKGVSPLHVLATKPNAFRSGSHLGRCIGTIYHCIF 222 (759)
Q Consensus 148 ~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~-----~~~~d~~G~TpLh~Aa~~~~~~~~~~~~~~~~~Ll~~ga~ 222 (759)
.+|..|.||||+|+..|+.+++++|++. +++ ++..|..|.||||+|+..|+ .+++++|+++|++
T Consensus 168 ---~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~~~~g~t~L~~A~~~g~-------~~~v~~Ll~~gad 236 (364)
T 3ljn_A 168 ---AKDKADETPLMRAMEFRNREALDLMMDT-VPSKSSLRLDYANKQGNSHLHWAILINW-------EDVAMRFVEMGID 236 (364)
T ss_dssp ---CCCTTSCCHHHHHHHTTCHHHHHHHHHH-CSCSSSCCTTCCCTTCCCTTHHHHTTTC-------HHHHHHHHTTTCC
T ss_pred ---ccCCCCCCHHHHHHHcCCHHHHHHHHhc-ccccccccccccCCCCCcHHHHHHHcCC-------HHHHHHHHHcCCC
Confidence 8999999999999999999999999995 566 99999999999999999985 7777777777665
Q ss_pred cc
Q 004365 223 VD 224 (759)
Q Consensus 223 ~~ 224 (759)
++
T Consensus 237 ~~ 238 (364)
T 3ljn_A 237 VN 238 (364)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 22
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=8e-39 Score=322.23 Aligned_cols=168 Identities=20% Similarity=0.137 Sum_probs=154.3
Q ss_pred ccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhcccccCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCcccCCCC
Q 004365 36 IHKVKITRSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCIATADRKLIGERN 115 (759)
Q Consensus 36 ~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~g~~~~~~~d 115 (759)
.+.+..|.+|+||||+||..|+.+++++|+++| ++++..|..|+||||+|+..|+.+++++|+++|++ ++.+|
T Consensus 2 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~ 74 (237)
T 3b7b_A 2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAG------ANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGAL-VDPKD 74 (237)
T ss_dssp CCCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTT------CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-CCCCC
T ss_pred CCcccccCCCCCHHHHHHHcCcHHHHHHHHHcC------CCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCC-CCCCC
Confidence 456778999999999999999999999999987 78899999999999999999999999999999998 99999
Q ss_pred CCCCcHHHHHHHCCCHHHHHHHHhcC-CCCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccccCCCCcHH
Q 004365 116 HENETPFFLAALHGHKDAFLCLHCLC-ASVDDGYTYSRRNDGETILHCAISGDYFDLAFQIIHLYEKLVNSVNEKGVSPL 194 (759)
Q Consensus 116 ~~G~TpLh~Aa~~g~~~iv~~Ll~~g-a~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpL 194 (759)
..|.||||+|+..|+.+++++|++.| .+++ .+|..|.||||+|+..|+.+++++|++. +.+++.+|..|.|||
T Consensus 75 ~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~-----~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L 148 (237)
T 3b7b_A 75 AEGSTCLHLAAKKGHYEVVQYLLSNGQMDVN-----CQDDGGWTPMIWATEYKHVDLVKLLLSK-GSDINIRDNEENICL 148 (237)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHTTTCCCTT-----CCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHH
T ss_pred CCCCcHHHHHHHcCCHHHHHHHHhCCCCCcc-----cCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCccCCCCCCHH
Confidence 99999999999999999999999999 7777 8999999999999999999999999994 778999999999999
Q ss_pred HHHHhCCCCCccCchHHHHHHHHhcCcCc
Q 004365 195 HVLATKPNAFRSGSHLGRCIGTIYHCIFV 223 (759)
Q Consensus 195 h~Aa~~~~~~~~~~~~~~~~~Ll~~ga~~ 223 (759)
|+|+..|+ .+++++|+++|+++
T Consensus 149 ~~A~~~~~-------~~~~~~Ll~~g~~~ 170 (237)
T 3b7b_A 149 HWAAFSGC-------VDIAEILLAAKCDL 170 (237)
T ss_dssp HHHHHHCC-------HHHHHHHHTTTCCT
T ss_pred HHHHHCCC-------HHHHHHHHHcCCCC
Confidence 99999885 56666666555544
No 23
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.4e-39 Score=331.49 Aligned_cols=171 Identities=19% Similarity=0.195 Sum_probs=123.4
Q ss_pred ccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhc--ccccCccCCCCCChHHHHHHHcCCH-HHHHHHHHcCCcccCCCCC
Q 004365 40 KITRSGGTALHIAVSDGQEEIVEDLVRIIKEKQ--QLEALTIGDERGSTPLHIAAGLGNV-SMCKCIATADRKLIGERNH 116 (759)
Q Consensus 40 ~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~g~~~~--~~~~~~~~d~~G~TpLh~Aa~~g~~-eiv~~Ll~~g~~~~~~~d~ 116 (759)
.+|..+.||||.||..|+.++|++|++.|++.. ....++..|..|.||||.|+..++. +++++|+++|++ +|.+|.
T Consensus 6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gad-vn~~d~ 84 (269)
T 4b93_B 6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLG-VNVTSQ 84 (269)
T ss_dssp -CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCC-TTCCCT
T ss_pred ccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCC-CCCcCC
Confidence 457788999999999999999999999876432 2234678889999999999988876 589999999999 999999
Q ss_pred CCCcHHHHHHHCCCHHHHHHHHhcCCCCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccccCCCCcHHHH
Q 004365 117 ENETPFFLAALHGHKDAFLCLHCLCASVDDGYTYSRRNDGETILHCAISGDYFDLAFQIIHLYEKLVNSVNEKGVSPLHV 196 (759)
Q Consensus 117 ~G~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~ 196 (759)
+|+||||+||..|+.++|++|++.|++++ .++.+|.||+|+|+..++.+++++|++. +++++.+|..|.||||+
T Consensus 85 ~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~-----~~~~~g~t~l~~a~~~~~~~~~~~Ll~~-g~~~n~~d~~g~TpL~~ 158 (269)
T 4b93_B 85 DGSSPLHVAALHGRADLIPLLLKHGANAG-----ARNADQAVPLHLACQQGHFQVVKCLLDS-NAKPNKKDLSGNTPLIY 158 (269)
T ss_dssp TSCCHHHHHHHTTCTTHHHHHHHTTCCTT-----CCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCSCCCCTTCCCHHHH
T ss_pred CCCCHHHHHHHcCcHHHHHHHHhcCCCcC-----ccCCCCCCccccccccChHHHHHHHHHC-CCCCCCCCCCCCCHHHH
Confidence 99999999999999999999999999999 8999999999999999999999999994 78899999999999999
Q ss_pred HHhCCCCCccCchHHHHHHHHhcCcCcc
Q 004365 197 LATKPNAFRSGSHLGRCIGTIYHCIFVD 224 (759)
Q Consensus 197 Aa~~~~~~~~~~~~~~~~~Ll~~ga~~~ 224 (759)
|+..|+ .+++++|+++|+++|
T Consensus 159 A~~~g~-------~~~v~~Ll~~gadvn 179 (269)
T 4b93_B 159 ACSGGH-------HELVALLLQHGASIN 179 (269)
T ss_dssp HHHTTC-------GGGHHHHHHTTCCTT
T ss_pred HHHCCC-------HHHHHHHHHCCCCCC
Confidence 999995 677777777766554
No 24
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=2.1e-39 Score=338.71 Aligned_cols=265 Identities=17% Similarity=0.189 Sum_probs=200.5
Q ss_pred HHHHcCCHHHHHHHHhhCcCccc-------cccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhcccccCccCCCCCChHH
Q 004365 16 KRAMKGEWKEVVKNYEKDERIHK-------VKITRSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPL 88 (759)
Q Consensus 16 ~aa~~g~~~~v~~lL~~~~~~~~-------~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~d~~G~TpL 88 (759)
.+|.++..+.+..++........ ...+.+|.||||.||..|+.++|++|+++| ++++.+|.+|+|||
T Consensus 4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g------~~~~~~~~~g~t~L 77 (299)
T 1s70_B 4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERG------ADINYANVDGLTAL 77 (299)
T ss_dssp HHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHC------CCTTCBCTTCCBHH
T ss_pred hHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcC------CCCcccCCCCCCHH
Confidence 46777777888888876433221 112345678888888888888888888876 66777888888888
Q ss_pred HHHHHcCCHHHHHHHHHcCCcccCCCCCCCCcHHHHHHHCCCHHHHHHHHhcCCCCCCCCccccCCCCCcHHHHHHHcCC
Q 004365 89 HIAAGLGNVSMCKCIATADRKLIGERNHENETPFFLAALHGHKDAFLCLHCLCASVDDGYTYSRRNDGETILHCAISGDY 168 (759)
Q Consensus 89 h~Aa~~g~~eiv~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~d~~g~TpLh~A~~~g~ 168 (759)
|+||..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.++|++|+++|++++ .+|..|.||||+|+..++
T Consensus 78 ~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~-----~~~~~g~t~l~~A~~~~~ 151 (299)
T 1s70_B 78 HQACIDDNVDMVKFLVENGAN-INQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVG-----AVNSEGDTPLDIAEEEAM 151 (299)
T ss_dssp HHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-----CCCTTSCCHHHHCCSHHH
T ss_pred HHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCC-----CcCCCCCCHHHHHHhcch
Confidence 888888888888888888887 78888888888888888888888888888888877 778888888888888888
Q ss_pred HHHHHHHHHhcCcCcccccCCCCcHHHHHHhCCCCCccCchHHHHHHHHhcCcCccchhhhhhhhhhhhhhccccCCCCc
Q 004365 169 FDLAFQIIHLYEKLVNSVNEKGVSPLHVLATKPNAFRSGSHLGRCIGTIYHCIFVDKLQEETSYDQYQLETSKKQTNCPE 248 (759)
Q Consensus 169 ~~iv~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~p~ 248 (759)
.++++.++...+.+++..+..+.+++
T Consensus 152 ~~~~~~ll~~~~~~~~~~~~~~~~~~------------------------------------------------------ 177 (299)
T 1s70_B 152 EELLQNEVNRQGVDIEAARKEEERIM------------------------------------------------------ 177 (299)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHH------------------------------------------------------
T ss_pred HHHHHHHHhhcCCCchhhhhhhhhHH------------------------------------------------------
Confidence 88888877765554332221111111
Q ss_pred chHhHHHHHHHHHHHHHHHhcCCCCccccCCCCccccCCCCCCCCCCcccccccCCCCCcCCCCCcchhhHHHHHHHHHH
Q 004365 249 NYETCLNFIRLLKTMVIVLSNRGNTKKERDAEDPERSKGNDGTGDQGEESRHNIGAQGHQFFPPNYGTCFEFVKLVSKAM 328 (759)
Q Consensus 249 ~~a~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (759)
T Consensus 178 -------------------------------------------------------------------------------- 177 (299)
T 1s70_B 178 -------------------------------------------------------------------------------- 177 (299)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhcchhHHHHHHHhhhhhhhHHHHHHHHHHhcccceecCCCCCCCCCCCCccccccCCCcccccCCCCccccccCCC
Q 004365 329 LVILGLGSTKIRKIRDKKQKHTWSVQILDELLRRASLYEYDDDGGKPLRRPSSQAEEDETSPYAIVDGGDTDAVLEGYQQ 408 (759)
Q Consensus 329 ~~~~~~g~~~~~~~~~~~~~~~~~~~iv~~Ll~~~~~~~~d~~G~TpL~~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 408 (759)
.+.+..++..+....
T Consensus 178 ------------------------~~~~~~~l~~~~~~~----------------------------------------- 192 (299)
T 1s70_B 178 ------------------------LRDARQWLNSGHIND----------------------------------------- 192 (299)
T ss_dssp ------------------------HHHHHHHHHHTCCCC-----------------------------------------
T ss_pred ------------------------HHHHHHHHhccCcch-----------------------------------------
Confidence 122233333311000
Q ss_pred CCCCccccccccccccccccCCCCCccccCCCCCCCCccCCCCCCcHHHHHHHcCcHHHHHHHHHHCCcceecccCCCCc
Q 004365 409 PDTSLTDHNVVADTHKLSRNNGKNSEDRNEGGKTGSTIPDMAKRETPILIAAKNGITEIVEKILESFPVAIHDINSEKKN 488 (759)
Q Consensus 409 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~d~~G~T 488 (759)
...+..|.||||+||..|+.++|++|+++ +.+++.+|..|+|
T Consensus 193 -------------------------------------~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~d~~~~d~~g~t 234 (299)
T 1s70_B 193 -------------------------------------VRHAKSGGTALHVAAAKGYTEVLKLLIQA-RYDVNIKDYDGWT 234 (299)
T ss_dssp -------------------------------------CCCTTTCCCHHHHHHHHTCHHHHHHHHTT-TCCTTCCCTTCCC
T ss_pred -------------------------------------hhhcCCCCCHHHHHHHCCcHHHHHHHHHc-CCCCCCcCCCCCc
Confidence 01456799999999999999999999987 7778999999999
Q ss_pred chhHHHHcCChhHHHHHHcCCCcccchhccccCCCCcHhHHHHhc
Q 004365 489 IVLLAVENRQPHVYQLLLKTTIMKDSVFRKVDDQGNSALHLAATL 533 (759)
Q Consensus 489 pLH~Av~~~~~~iv~~Ll~~~~~~~~~~n~~D~~G~TpLh~Aa~~ 533 (759)
|||+|+.+|+.+++++|+++|+ +++.+|..|+||||+|++.
T Consensus 235 pL~~A~~~~~~~~v~~Ll~~ga----d~~~~d~~g~t~l~~A~~~ 275 (299)
T 1s70_B 235 PLHAAAHWGKEEACRILVENLC----DMEAVNKVGQTAFDVADED 275 (299)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTSCCTTTSCCSG
T ss_pred HHHHHHhcCCHHHHHHHHHcCC----CCCCcCCCCCCHHHHHHHH
Confidence 9999999999999999999998 9999999999999999753
No 25
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=3.1e-38 Score=316.53 Aligned_cols=163 Identities=17% Similarity=0.179 Sum_probs=141.4
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHHHhhhhcccccCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCcccCCCCCCCCcH
Q 004365 42 TRSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCIATADRKLIGERNHENETP 121 (759)
Q Consensus 42 d~~g~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~g~~~~~~~d~~G~Tp 121 (759)
+..+.||||.||..|+.+.++.|++.+ ...++.+|..|+||||+||..|+.+++++|+++|++ ++.+|..|+||
T Consensus 3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~-----~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~ 76 (231)
T 3aji_A 3 GCVSNIMICNLAYSGKLDELKERILAD-----KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP-VNDKDDAGWSP 76 (231)
T ss_dssp CCCSSSHHHHHHHHTCHHHHHHHHHHC-----GGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTSCCH
T ss_pred CccccchHHHHHHhCCHHHHHHHHHhc-----hhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCC-CCCcCCCCCCH
Confidence 346789999999999999999999875 355788899999999999999999999999999988 89999999999
Q ss_pred HHHHHHCCCHHHHHHHHhcCCCCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccccCCCCcHHHHHHhCC
Q 004365 122 FFLAALHGHKDAFLCLHCLCASVDDGYTYSRRNDGETILHCAISGDYFDLAFQIIHLYEKLVNSVNEKGVSPLHVLATKP 201 (759)
Q Consensus 122 Lh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~~ 201 (759)
||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++ +.+++.+|..|.||||+|+..|
T Consensus 77 L~~A~~~~~~~~v~~Ll~~g~~~~-----~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~ 150 (231)
T 3aji_A 77 LHIAASAGXDEIVKALLVKGAHVN-----AVNQNGCTPLHYAASKNRHEIAVMLLEG-GANPDAKDHYDATAMHRAAAKG 150 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCTT-----CCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHT
T ss_pred HHHHHHcCHHHHHHHHHHcCCCCC-----CCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCcHHHHHHHcC
Confidence 999999999999999999999988 8899999999999999999999999984 7779999999999999999888
Q ss_pred CCCccCchHHHHHHHHhcCcCc
Q 004365 202 NAFRSGSHLGRCIGTIYHCIFV 223 (759)
Q Consensus 202 ~~~~~~~~~~~~~~Ll~~ga~~ 223 (759)
+ .+++++|+++|+++
T Consensus 151 ~-------~~~v~~Ll~~g~~~ 165 (231)
T 3aji_A 151 N-------LKMVHILLFYKAST 165 (231)
T ss_dssp C-------HHHHHHHHHTTCCS
T ss_pred C-------HHHHHHHHhcCCCc
Confidence 5 55555555544433
No 26
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=1.4e-38 Score=321.26 Aligned_cols=223 Identities=18% Similarity=0.169 Sum_probs=195.6
Q ss_pred CccCCCCCChHHHHHHHcCCHHHHHHHHH----cCCcccCCCCCCCCcHHHHHHHCCCHHHHHHHHhcCCCCCCCCcccc
Q 004365 77 LTIGDERGSTPLHIAAGLGNVSMCKCIAT----ADRKLIGERNHENETPFFLAALHGHKDAFLCLHCLCASVDDGYTYSR 152 (759)
Q Consensus 77 ~~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~----~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~ 152 (759)
++.+|.+|+||||+||..|+.+++++|++ .+.+ ++.+|..|+||||+|+..|+.+++++|+++|++++ .+
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-----~~ 75 (241)
T 1k1a_A 2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRE-LDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPM-----AL 75 (241)
T ss_dssp -----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-----CC
T ss_pred ccccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCC-CCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCcc-----cc
Confidence 45679999999999999999999999997 6776 99999999999999999999999999999999998 89
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHhcC---cCcccccCCCCcHHHHHHhCCCCCccCchHHHHHHHHhcCcCccchhhh
Q 004365 153 RNDGETILHCAISGDYFDLAFQIIHLYE---KLVNSVNEKGVSPLHVLATKPNAFRSGSHLGRCIGTIYHCIFVDKLQEE 229 (759)
Q Consensus 153 d~~g~TpLh~A~~~g~~~iv~~Ll~~~~---~~~~~~d~~G~TpLh~Aa~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~ 229 (759)
|..|.||||+|+..|+.+++++|++.+. .+++..|..|.||||+|+..++ .+++++|+++|++++..
T Consensus 76 ~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~-------~~~~~~Ll~~g~~~~~~--- 145 (241)
T 1k1a_A 76 DRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTEC-------QETVQLLLERGADIDAV--- 145 (241)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTC-------HHHHHHHHHTTCCTTCC---
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCC-------HHHHHHHHHcCCCcccc---
Confidence 9999999999999999999999999754 2789999999999999999885 55666555555443221
Q ss_pred hhhhhhhhhhccccCCCCcchHhHHHHHHHHHHHHHHHhcCCCCccccCCCCccccCCCCCCCCCCcccccccCCCCCcC
Q 004365 230 TSYDQYQLETSKKQTNCPENYETCLNFIRLLKTMVIVLSNRGNTKKERDAEDPERSKGNDGTGDQGEESRHNIGAQGHQF 309 (759)
Q Consensus 230 ~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (759)
T Consensus 146 -------------------------------------------------------------------------------- 145 (241)
T 1k1a_A 146 -------------------------------------------------------------------------------- 145 (241)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHhcchhHHHHHHHhhhhhhhHHHHHHHHHHhcccceecCCCCCCCCCCCCccccccCC
Q 004365 310 FPPNYGTCFEFVKLVSKAMLVILGLGSTKIRKIRDKKQKHTWSVQILDELLRRASLYEYDDDGGKPLRRPSSQAEEDETS 389 (759)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~iv~~Ll~~~~~~~~d~~G~TpL~~a~~~~~~~~~~ 389 (759)
T Consensus 146 -------------------------------------------------------------------------------- 145 (241)
T 1k1a_A 146 -------------------------------------------------------------------------------- 145 (241)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccCCCCccccccCCCCCCCccccccccccccccccCCCCCccccCCCCCCCCccCCCCCCcHHHHHHHcCcHHHHH
Q 004365 390 PYAIVDGGDTDAVLEGYQQPDTSLTDHNVVADTHKLSRNNGKNSEDRNEGGKTGSTIPDMAKRETPILIAAKNGITEIVE 469 (759)
Q Consensus 390 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiv~ 469 (759)
.+..|.||||+|+..|+.++++
T Consensus 146 ----------------------------------------------------------~~~~g~t~L~~A~~~~~~~~v~ 167 (241)
T 1k1a_A 146 ----------------------------------------------------------DIKSGRSPLIHAVENNSLSMVQ 167 (241)
T ss_dssp ----------------------------------------------------------CTTTCCCHHHHHHHTTCHHHHH
T ss_pred ----------------------------------------------------------cccCCCcHHHHHHHcCCHHHHH
Confidence 1145999999999999999999
Q ss_pred HHHHHCCcceecccCCCCcchhHHHHcCChhHHHHHHcCCCcccchhccccCCCCcHhHHHHhcCCCCc
Q 004365 470 KILESFPVAIHDINSEKKNIVLLAVENRQPHVYQLLLKTTIMKDSVFRKVDDQGNSALHLAATLGDHKP 538 (759)
Q Consensus 470 ~LL~~~~~~~~~~d~~G~TpLH~Av~~~~~~iv~~Ll~~~~~~~~~~n~~D~~G~TpLh~Aa~~g~~~~ 538 (759)
+|+++ +.+++.+|..|+||||+|+..|+.+++++|+++|+ +++.+|.+|+||||+|+..|+.++
T Consensus 168 ~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga----~~~~~~~~g~tpl~~A~~~~~~~i 231 (241)
T 1k1a_A 168 LLLQH-GANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGA----DSSLKNCHNDTPLMVARSRRVIDI 231 (241)
T ss_dssp HHHHT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTC----CTTCCCTTSCCTTTTCSSHHHHHH
T ss_pred HHHHc-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCC----CCCCcCCCCCCHHHHHHhcCcHHH
Confidence 99998 77788999999999999999999999999999998 899999999999999999987444
No 27
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=2.8e-37 Score=308.84 Aligned_cols=157 Identities=20% Similarity=0.207 Sum_probs=133.7
Q ss_pred CChHHHHHHHcCCHHHHHHHHHHhhhhcccccCccCCCCCChHHHHHHHcCCHHHHHHHHHcC--CcccCC-CCCCCCcH
Q 004365 45 GGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCIATAD--RKLIGE-RNHENETP 121 (759)
Q Consensus 45 g~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~g--~~~~~~-~d~~G~Tp 121 (759)
|+||||+||..|+.++|+.|++.|+ ...+.+|..|+||||+|+..|+.+++++|+++| .+ ++. +|..|+||
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~-----~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~-~~~~~~~~g~t~ 75 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKP-----SLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN-LDDYPDDSGWTP 75 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCG-----GGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCC-GGGCCCTTSCCH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCc-----cccccCCCCCCCHHHHHHHcCCHHHHHHHHhcccccc-ccccCCCCCCCH
Confidence 7899999999999999999999873 345568899999999999999999999999998 55 444 88899999
Q ss_pred HHHHHHCCCHHHHHHHHhcC--CCCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccccCCCCcHHHHHHh
Q 004365 122 FFLAALHGHKDAFLCLHCLC--ASVDDGYTYSRRNDGETILHCAISGDYFDLAFQIIHLYEKLVNSVNEKGVSPLHVLAT 199 (759)
Q Consensus 122 Lh~Aa~~g~~~iv~~Ll~~g--a~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~Aa~ 199 (759)
||+|+..|+.+++++|+++| ++++ .+|..|.||||+|+..|+.+++++|+++ +.+++.+|..|.||||+|+.
T Consensus 76 L~~A~~~~~~~~~~~Ll~~g~~~~~~-----~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~ 149 (228)
T 2dzn_A 76 FHIACSVGNLEVVKSLYDRPLKPDLN-----KITNQGVTCLHLAVGKKWFEVSQFLIEN-GASVRIKDKFNQIPLHRAAS 149 (228)
T ss_dssp HHHHHHHCCHHHHHHHHSSSSCCCTT-----CCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCSCCCCTTSCCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhCCCCcccc-----cCCcCCCCHHHHHHHcCCHhHHHHHHHc-CCCccccCCCCCCHHHHHHH
Confidence 99999999999999999998 7766 7889999999999999999999999995 77899999999999999998
Q ss_pred CCCCCccCchHHHHHHHHhcC
Q 004365 200 KPNAFRSGSHLGRCIGTIYHC 220 (759)
Q Consensus 200 ~~~~~~~~~~~~~~~~Ll~~g 220 (759)
.|+ .+++++|+++|
T Consensus 150 ~~~-------~~~v~~Ll~~g 163 (228)
T 2dzn_A 150 VGS-------LKLIELLCGLG 163 (228)
T ss_dssp TTC-------HHHHHHHHTTT
T ss_pred cCC-------HHHHHHHHhcC
Confidence 885 44444444443
No 28
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=1.9e-37 Score=310.04 Aligned_cols=215 Identities=17% Similarity=0.137 Sum_probs=190.8
Q ss_pred CChHHHHHHHcCCHHHHHHHHHcCCcccCCCCCCCCcHHHHHHHCCCHHHHHHHHhcCCCCCCCCccc-cCCCCCcHHHH
Q 004365 84 GSTPLHIAAGLGNVSMCKCIATADRKLIGERNHENETPFFLAALHGHKDAFLCLHCLCASVDDGYTYS-RRNDGETILHC 162 (759)
Q Consensus 84 G~TpLh~Aa~~g~~eiv~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~-~d~~g~TpLh~ 162 (759)
|+||||+||..|+.+++++|++.+++..+.+|..|+||||+|+..|+.+++++|+++|++++ .+. .|..|.||||+
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~---~~~~~~~~g~t~L~~ 78 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN---LDDYPDDSGWTPFHI 78 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCC---GGGCCCTTSCCHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhcccccc---ccccCCCCCCCHHHH
Confidence 78999999999999999999999999777799999999999999999999999999996554 224 78899999999
Q ss_pred HHHcCCHHHHHHHHHhc-CcCcccccCCCCcHHHHHHhCCCCCccCchHHHHHHHHhcCcCccchhhhhhhhhhhhhhcc
Q 004365 163 AISGDYFDLAFQIIHLY-EKLVNSVNEKGVSPLHVLATKPNAFRSGSHLGRCIGTIYHCIFVDKLQEETSYDQYQLETSK 241 (759)
Q Consensus 163 A~~~g~~~iv~~Ll~~~-~~~~~~~d~~G~TpLh~Aa~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~ 241 (759)
|+..|+.+++++|++++ +.+++..|..|.||||+|+..++ .+++++|+++|++++.
T Consensus 79 A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~-------~~~~~~Ll~~g~~~~~---------------- 135 (228)
T 2dzn_A 79 ACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKW-------FEVSQFLIENGASVRI---------------- 135 (228)
T ss_dssp HHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTC-------HHHHHHHHHTTCCSCC----------------
T ss_pred HHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCC-------HhHHHHHHHcCCCccc----------------
Confidence 99999999999999963 27899999999999999999985 5566666555544322
Q ss_pred ccCCCCcchHhHHHHHHHHHHHHHHHhcCCCCccccCCCCccccCCCCCCCCCCcccccccCCCCCcCCCCCcchhhHHH
Q 004365 242 KQTNCPENYETCLNFIRLLKTMVIVLSNRGNTKKERDAEDPERSKGNDGTGDQGEESRHNIGAQGHQFFPPNYGTCFEFV 321 (759)
Q Consensus 242 ~~~~~p~~~a~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (759)
T Consensus 136 -------------------------------------------------------------------------------- 135 (228)
T 2dzn_A 136 -------------------------------------------------------------------------------- 135 (228)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHhcchhHHHHHHHhhhhhhhHHHHHHHHHHhcccceecCCCCCCCCCCCCccccccCCCcccccCCCCcc
Q 004365 322 KLVSKAMLVILGLGSTKIRKIRDKKQKHTWSVQILDELLRRASLYEYDDDGGKPLRRPSSQAEEDETSPYAIVDGGDTDA 401 (759)
Q Consensus 322 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~iv~~Ll~~~~~~~~d~~G~TpL~~a~~~~~~~~~~~~~~~~~g~~~~ 401 (759)
T Consensus 136 -------------------------------------------------------------------------------- 135 (228)
T 2dzn_A 136 -------------------------------------------------------------------------------- 135 (228)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCCCCccccccccccccccccCCCCCccccCCCCCCCCccCCCCCCcHHHHHHHcCcHHHHHHHHHHCCcceec
Q 004365 402 VLEGYQQPDTSLTDHNVVADTHKLSRNNGKNSEDRNEGGKTGSTIPDMAKRETPILIAAKNGITEIVEKILESFPVAIHD 481 (759)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~ 481 (759)
.|..|.||||+|+..|+.+++++|++..+.+++.
T Consensus 136 ----------------------------------------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~ 169 (228)
T 2dzn_A 136 ----------------------------------------------KDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNW 169 (228)
T ss_dssp ----------------------------------------------CCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCC
T ss_pred ----------------------------------------------cCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccC
Confidence 3456999999999999999999999996688999
Q ss_pred ccCCCCcchhHHHHcCChhHHHHHH-cCCCcccchhccccCCCCcHhHHHHhcC
Q 004365 482 INSEKKNIVLLAVENRQPHVYQLLL-KTTIMKDSVFRKVDDQGNSALHLAATLG 534 (759)
Q Consensus 482 ~d~~G~TpLH~Av~~~~~~iv~~Ll-~~~~~~~~~~n~~D~~G~TpLh~Aa~~g 534 (759)
+|..|+||||+|+..|+.+++++|+ +.|+ +++.+|.+|+||||+|++.+
T Consensus 170 ~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga----~~~~~~~~g~t~l~~A~~~~ 219 (228)
T 2dzn_A 170 QDKQGWTPLFHALAEGHGDAAVLLVEKYGA----EYDLVDNKGAKAEDVALNEQ 219 (228)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHHHCC----CSCCBCTTSCBGGGGCSSTT
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHhcCC----CCCccCCCCCcHHHHHHHHH
Confidence 9999999999999999999999999 8888 99999999999999998654
No 29
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=4.1e-37 Score=310.00 Aligned_cols=153 Identities=20% Similarity=0.150 Sum_probs=142.4
Q ss_pred ccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhcccccCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCcccCCCCCC
Q 004365 38 KVKITRSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCIATADRKLIGERNHE 117 (759)
Q Consensus 38 ~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~g~~~~~~~d~~ 117 (759)
++..|..|.||||.|+..|+.+++++|++.| .+++.+|..|.||||+|+..|+.+++++|+++|++.....+..
T Consensus 2 ~~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~ 75 (240)
T 3eu9_A 2 MTHIDDYSTWDIVKATQYGIYERCRELVEAG------YDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDL 75 (240)
T ss_dssp CCCCSCGGGCCHHHHHHTTCHHHHHHHHHTT------CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTT
T ss_pred ccccccccchHHHHHHHcCChHHHHHHHHcC------CCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCc
Confidence 3456889999999999999999999999987 7789999999999999999999999999999999855566677
Q ss_pred CCcHHHHHHHCCCHHHHHHHHhcCCCCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccccCCCCcHHHHH
Q 004365 118 NETPFFLAALHGHKDAFLCLHCLCASVDDGYTYSRRNDGETILHCAISGDYFDLAFQIIHLYEKLVNSVNEKGVSPLHVL 197 (759)
Q Consensus 118 G~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A 197 (759)
|.||||+|+..|+.+++++|++.|++++ .+|..|.||||+|+..|+.+++++|+++ +.+++..|..|.||||+|
T Consensus 76 ~~t~L~~A~~~~~~~~v~~Ll~~g~~~~-----~~~~~g~t~l~~A~~~~~~~~~~~Ll~~-~~~~~~~~~~g~t~l~~a 149 (240)
T 3eu9_A 76 NSTPLHWATRQGHLSMVVQLMKYGADPS-----LIDGEGCSCIHLAAQFGHTSIVAYLIAK-GQDVDMMDQNGMTPLMWA 149 (240)
T ss_dssp TBCHHHHHHHHTCHHHHHHHHHTTCCTT-----CCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHH
T ss_pred CCChhHHHHHcCCHHHHHHHHHcCCCCc-----ccCCCCCCHHHHHHHcCHHHHHHHHHhc-CCCccccCCCCCcHHHHH
Confidence 9999999999999999999999999998 8999999999999999999999999995 778999999999999999
Q ss_pred HhCCC
Q 004365 198 ATKPN 202 (759)
Q Consensus 198 a~~~~ 202 (759)
+..++
T Consensus 150 ~~~~~ 154 (240)
T 3eu9_A 150 AYRTH 154 (240)
T ss_dssp HHHCC
T ss_pred HHhCC
Confidence 97664
No 30
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.5e-38 Score=323.84 Aligned_cols=218 Identities=18% Similarity=0.179 Sum_probs=166.7
Q ss_pred ccCCCCCChHHHHHHHcCCHHHHHHHHHcCCcc-------cCCCCCCCCcHHHHHHHCCCH-HHHHHHHhcCCCCCCCCc
Q 004365 78 TIGDERGSTPLHIAAGLGNVSMCKCIATADRKL-------IGERNHENETPFFLAALHGHK-DAFLCLHCLCASVDDGYT 149 (759)
Q Consensus 78 ~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~g~~~-------~~~~d~~G~TpLh~Aa~~g~~-~iv~~Ll~~ga~~~~~~~ 149 (759)
..+|.++.|||+.||..|+.++|++|++.+++. ++..|..|.||||+|+..++. +++++|++.|+++|
T Consensus 5 ~kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn---- 80 (269)
T 4b93_B 5 TKKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVN---- 80 (269)
T ss_dssp --CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTT----
T ss_pred cccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCC----
Confidence 346788899999999999999999999998753 567788999999999998876 48999999999999
Q ss_pred cccCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccccCCCCcHHHHHHhCCCCCccCchHHHHHHHHhcCcCccchhhh
Q 004365 150 YSRRNDGETILHCAISGDYFDLAFQIIHLYEKLVNSVNEKGVSPLHVLATKPNAFRSGSHLGRCIGTIYHCIFVDKLQEE 229 (759)
Q Consensus 150 ~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~ 229 (759)
.+|.+|+||||+|+..|+.+++++|++. +++++..+.+|.||+|+|+..++ .++++.|+++|++++.
T Consensus 81 -~~d~~G~TpLh~A~~~g~~~~v~~Ll~~-~a~~~~~~~~g~t~l~~a~~~~~-------~~~~~~Ll~~g~~~n~---- 147 (269)
T 4b93_B 81 -VTSQDGSSPLHVAALHGRADLIPLLLKH-GANAGARNADQAVPLHLACQQGH-------FQVVKCLLDSNAKPNK---- 147 (269)
T ss_dssp -CCCTTSCCHHHHHHHTTCTTHHHHHHHT-TCCTTCCCTTCCCHHHHHHHHTC-------HHHHHHHHHTTCCSCC----
T ss_pred -CcCCCCCCHHHHHHHcCcHHHHHHHHhc-CCCcCccCCCCCCccccccccCh-------HHHHHHHHHCCCCCCC----
Confidence 8999999999999999999999999994 77899999999999999999885 5555555555544432
Q ss_pred hhhhhhhhhhccccCCCCcchHhHHHHHHHHHHHHHHHhcCCCCccccCCCCccccCCCCCCCCCCcccccccCCCCCcC
Q 004365 230 TSYDQYQLETSKKQTNCPENYETCLNFIRLLKTMVIVLSNRGNTKKERDAEDPERSKGNDGTGDQGEESRHNIGAQGHQF 309 (759)
Q Consensus 230 ~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (759)
T Consensus 148 -------------------------------------------------------------------------------- 147 (269)
T 4b93_B 148 -------------------------------------------------------------------------------- 147 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHhcchhHHHHHHHhhhhhhhHHHHHHHHHHhcccceecCCCCCCCCCCCCccccccCC
Q 004365 310 FPPNYGTCFEFVKLVSKAMLVILGLGSTKIRKIRDKKQKHTWSVQILDELLRRASLYEYDDDGGKPLRRPSSQAEEDETS 389 (759)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~iv~~Ll~~~~~~~~d~~G~TpL~~a~~~~~~~~~~ 389 (759)
T Consensus 148 -------------------------------------------------------------------------------- 147 (269)
T 4b93_B 148 -------------------------------------------------------------------------------- 147 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccCCCCccccccCCCCCCCccccccccccccccccCCCCCccccCCCCCCCCccCCCCCCcHHHHHHHcCcHHHHH
Q 004365 390 PYAIVDGGDTDAVLEGYQQPDTSLTDHNVVADTHKLSRNNGKNSEDRNEGGKTGSTIPDMAKRETPILIAAKNGITEIVE 469 (759)
Q Consensus 390 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~d~~g~TpLh~Aa~~g~~eiv~ 469 (759)
.|..|+||||+||..|+.++|+
T Consensus 148 ----------------------------------------------------------~d~~g~TpL~~A~~~g~~~~v~ 169 (269)
T 4b93_B 148 ----------------------------------------------------------KDLSGNTPLIYACSGGHHELVA 169 (269)
T ss_dssp ----------------------------------------------------------CCTTCCCHHHHHHHTTCGGGHH
T ss_pred ----------------------------------------------------------CCCCCCCHHHHHHHCCCHHHHH
Confidence 4456999999999999999999
Q ss_pred HHHHHCCcceecccCCCCcchhHHHHcCChhHHHHHHcCCCcccchhccccCCCCcHhHHHHhcCC
Q 004365 470 KILESFPVAIHDINSEKKNIVLLAVENRQPHVYQLLLKTTIMKDSVFRKVDDQGNSALHLAATLGD 535 (759)
Q Consensus 470 ~LL~~~~~~~~~~d~~G~TpLH~Av~~~~~~iv~~Ll~~~~~~~~~~n~~D~~G~TpLh~Aa~~g~ 535 (759)
+||++ +.+++.+|..|+||||+||.+|+.++|++|+++|+ +++.+|++|+||||+|+++|+
T Consensus 170 ~Ll~~-gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Ga----d~~~~d~~G~TpL~~A~~~~~ 230 (269)
T 4b93_B 170 LLLQH-GASINASNNKGNTALHEAVIEKHVFVVELLLLHGA----SVQVLNKRQRTAVDCAEQNSK 230 (269)
T ss_dssp HHHHT-TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTC----CSCCCCTTSCCSGGGSCTTCH
T ss_pred HHHHC-CCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCC----CCCCcCCCCCCHHHHHHhCCc
Confidence 99998 77889999999999999999999999999999998 999999999999999998765
No 31
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=7.1e-38 Score=324.20 Aligned_cols=180 Identities=14% Similarity=0.064 Sum_probs=158.8
Q ss_pred HHHcCCHHHHHHHHhhCcCccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhcccccCccCCCCCChHHHHHHHcCC
Q 004365 17 RAMKGEWKEVVKNYEKDERIHKVKITRSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGN 96 (759)
Q Consensus 17 aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~d~~G~TpLh~Aa~~g~ 96 (759)
++...+...+.++|.+. +++.+|.+|+||||+||..|+.++|++|+++| ++++.+ +|+||||+||..|+
T Consensus 6 ~i~~~~~~~v~~lL~~~---~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g------~~~~~~--~g~t~L~~A~~~g~ 74 (285)
T 3kea_A 6 RINTWKSKQLKSFLSSK---DTFKADVHGHSASYYAIADNNVRLVCTLLNAG------ALKNLL--ENEFPLHQAATLED 74 (285)
T ss_dssp TGGGCCHHHHHHHHHST---TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT------GGGSCC--TTCCHHHHHTTSSS
T ss_pred HHHhcCHHHHHHHHHhC---CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCC------CCCCCC--CCCCHHHHHHHcCC
Confidence 35578889999999883 57889999999999999999999999999997 556666 49999999999999
Q ss_pred HHHHHHHHHcCCcccCCCCCCCCcHHHHHHHCCCHHHHHHHHhcCCCCCCCCccccCCCC-CcHHHHHHHcCCHHHHHHH
Q 004365 97 VSMCKCIATADRKLIGERNHENETPFFLAALHGHKDAFLCLHCLCASVDDGYTYSRRNDG-ETILHCAISGDYFDLAFQI 175 (759)
Q Consensus 97 ~eiv~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~d~~g-~TpLh~A~~~g~~~iv~~L 175 (759)
.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+++|++++ .+|..| .||||+|+..|+.+++++|
T Consensus 75 ~~~v~~Ll~~ga~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-----~~~~~g~~t~L~~A~~~~~~~~v~~L 148 (285)
T 3kea_A 75 TKIVKILLFSGLD-DSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLM-----FYGKTGWKTSFYHAVMLNDVSIVSYF 148 (285)
T ss_dssp CHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGG-----GCSSSGGGSHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHCCCC-CCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCC-----ccCCCCCCCHHHHHHHcCCHHHHHHH
Confidence 9999999999999 99999999999999999999999999999999998 899999 8999999999999999999
Q ss_pred HHhcCcCcccccC-CCCcHHHHHHhCCCCCccCchHHHHHHHHhcCcCc
Q 004365 176 IHLYEKLVNSVNE-KGVSPLHVLATKPNAFRSGSHLGRCIGTIYHCIFV 223 (759)
Q Consensus 176 l~~~~~~~~~~d~-~G~TpLh~Aa~~~~~~~~~~~~~~~~~Ll~~ga~~ 223 (759)
+++ +.+. .+. .|.||||+|+..|+ .+++++|+++|+++
T Consensus 149 l~~-g~~~--~~~~~g~t~L~~A~~~g~-------~~~v~~Ll~~gad~ 187 (285)
T 3kea_A 149 LSE-IPST--FDLAILLSCIHITIKNGH-------VDMMILLLDYMTST 187 (285)
T ss_dssp HTT-SCTT--CCCSTHHHHHHHHHHTTC-------HHHHHHHHHHHHHT
T ss_pred HhC-CCcc--ccccCCccHHHHHHHcCh-------HHHHHHHHHcCCCC
Confidence 996 4434 333 89999999999985 56666666555444
No 32
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=1.5e-38 Score=336.01 Aligned_cols=181 Identities=10% Similarity=-0.034 Sum_probs=143.6
Q ss_pred cCCHHHHHHHHhhCcCccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhcccccCcc--------CCCCC---ChHH
Q 004365 20 KGEWKEVVKNYEKDERIHKVKITRSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTI--------GDERG---STPL 88 (759)
Q Consensus 20 ~g~~~~v~~lL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~--------~d~~G---~TpL 88 (759)
....+.|..++.+ +++++..+..|.|++| |+.++|+.|+++|.+++..+.... ....+ .+.+
T Consensus 29 ~~~~dlv~~ll~~--ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 101 (327)
T 1sw6_A 29 TFTHDLTSDFLSS--PLKIMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQ 101 (327)
T ss_dssp ECCTTCCCSTTTS--SCCCEECBCCCCCCCH-----HHHHHHHHHHHHHHC-----------------------------
T ss_pred hhcCchHHHHhhC--CcccccCCCCCCcccC-----chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchh
Confidence 3444555555555 8999999999999988 999999999999965443222111 11122 2346
Q ss_pred HHHHHcCCHHHHHHHHHcCCcccCC-CCCCCCcHHHHHHHCCCHHHHHHHHhcCCCCCCCCccccCCCCCcHHHHHHHcC
Q 004365 89 HIAAGLGNVSMCKCIATADRKLIGE-RNHENETPFFLAALHGHKDAFLCLHCLCASVDDGYTYSRRNDGETILHCAISGD 167 (759)
Q Consensus 89 h~Aa~~g~~eiv~~Ll~~g~~~~~~-~d~~G~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~d~~g~TpLh~A~~~g 167 (759)
|+|+..+..+++++|++.|++ +|. +|..|+||||+||..|+.++|++|+++|++++ .+|.+|+||||+|+..|
T Consensus 102 ~~a~~~~~~~~~~~l~~~g~d-vn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n-----~~d~~g~TpLh~A~~~g 175 (327)
T 1sw6_A 102 HVSFDSLLQEVNDAFPNTQLN-LNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRL-----YGDNMGESCLVKAVKSV 175 (327)
T ss_dssp --CHHHHHHHHHHHCTTSCCC-SCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-----BCCTTCCCHHHHHHHSS
T ss_pred HHHHHhhHHHHHHHHHhcCCC-cccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC-----CcCCCCCCHHHHHHHhc
Confidence 899999999999999999999 999 89999999999999999999999999999999 89999999999999999
Q ss_pred C---HHHHHHHHHhcCcCcccccCCCCcHHHHHHh----CCCCCccCchHHHHHHHHhcC
Q 004365 168 Y---FDLAFQIIHLYEKLVNSVNEKGVSPLHVLAT----KPNAFRSGSHLGRCIGTIYHC 220 (759)
Q Consensus 168 ~---~~iv~~Ll~~~~~~~~~~d~~G~TpLh~Aa~----~~~~~~~~~~~~~~~~Ll~~g 220 (759)
+ .++++.|++...++++.+|..|+||||+|+. .|+ .++++.|++.+
T Consensus 176 ~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~-------~~~v~~Ll~~~ 228 (327)
T 1sw6_A 176 NNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGC-------SAAAKYYLDIL 228 (327)
T ss_dssp HHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTC-------HHHHHHHHHHH
T ss_pred ccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHcccccc-------HHHHHHHHHHH
Confidence 8 7899999997778899999999999999998 663 67777776543
No 33
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=5.4e-36 Score=300.24 Aligned_cols=224 Identities=20% Similarity=0.219 Sum_probs=210.3
Q ss_pred ccHHHHHHHHcCCHHHHHHHHhhCcCccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhcccccCccCCCCCChHHH
Q 004365 10 LKKDLFKRAMKGEWKEVVKNYEKDERIHKVKITRSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLH 89 (759)
Q Consensus 10 ~~~~L~~aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~d~~G~TpLh 89 (759)
.+++|+.|+..|+.+.++.++... ....+..|.+|+||||+||..|+.++|++|+++| ++++.+|..|+||||
T Consensus 6 ~~~~l~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g------~~~~~~~~~g~t~L~ 78 (231)
T 3aji_A 6 SNIMICNLAYSGKLDELKERILAD-KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLG------VPVNDKDDAGWSPLH 78 (231)
T ss_dssp SSSHHHHHHHHTCHHHHHHHHHHC-GGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTT------CCSCCCCTTSCCHHH
T ss_pred ccchHHHHHHhCCHHHHHHHHHhc-hhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhC------CCCCCcCCCCCCHHH
Confidence 467899999999999999999985 3456778999999999999999999999999987 789999999999999
Q ss_pred HHHHcCCHHHHHHHHHcCCcccCCCCCCCCcHHHHHHHCCCHHHHHHHHhcCCCCCCCCccccCCCCCcHHHHHHHcCCH
Q 004365 90 IAAGLGNVSMCKCIATADRKLIGERNHENETPFFLAALHGHKDAFLCLHCLCASVDDGYTYSRRNDGETILHCAISGDYF 169 (759)
Q Consensus 90 ~Aa~~g~~eiv~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~d~~g~TpLh~A~~~g~~ 169 (759)
+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.
T Consensus 79 ~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-----~~~~~g~t~L~~A~~~~~~ 152 (231)
T 3aji_A 79 IAASAGXDEIVKALLVKGAH-VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD-----AKDHYDATAMHRAAAKGNL 152 (231)
T ss_dssp HHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-----CCCTTSCCHHHHHHHHTCH
T ss_pred HHHHcCHHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-----CcCCCCCcHHHHHHHcCCH
Confidence 99999999999999999999 99999999999999999999999999999999998 8999999999999999999
Q ss_pred HHHHHHHHhcCcCcccccCCCCcHHHHHHhCCCCCccCchHHHHHHHHhcCcCccchhhhhhhhhhhhhhccccCCCCcc
Q 004365 170 DLAFQIIHLYEKLVNSVNEKGVSPLHVLATKPNAFRSGSHLGRCIGTIYHCIFVDKLQEETSYDQYQLETSKKQTNCPEN 249 (759)
Q Consensus 170 ~iv~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 249 (759)
+++++|++ .+.+++.+|..|.||||+|+..++ .+++++|+++|++++..+. .|.||++
T Consensus 153 ~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~-------~~~v~~Ll~~ga~~~~~~~--------------~g~t~l~ 210 (231)
T 3aji_A 153 KMVHILLF-YKASTNIQDTEGNTPLHLACDEER-------VEEAKFLVTQGASIYIENK--------------EEKTPLQ 210 (231)
T ss_dssp HHHHHHHH-TTCCSCCCCTTSCCHHHHHHHTTC-------HHHHHHHHHTTCCSCCCCT--------------TSCCHHH
T ss_pred HHHHHHHh-cCCCccccCCCCCCHHHHHHHCCC-------HHHHHHHHHCCCCCCCCCC--------------CCCCHHH
Confidence 99999999 578899999999999999999995 9999999999999987764 7889999
Q ss_pred hHhHHHHHHHHHHHHHHHh
Q 004365 250 YETCLNFIRLLKTMVIVLS 268 (759)
Q Consensus 250 ~a~~~~~~~~~~~ll~~~~ 268 (759)
++...+..++++.|.+..+
T Consensus 211 ~A~~~~~~~i~~lL~~~~a 229 (231)
T 3aji_A 211 VAKGGLGLILKRLAEGEEA 229 (231)
T ss_dssp HSCHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHccccc
Confidence 9999999999999988765
No 34
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=5.1e-36 Score=298.67 Aligned_cols=134 Identities=25% Similarity=0.266 Sum_probs=77.3
Q ss_pred CCHHHHHHHHHHhhhhcccccCcc-CCCCCChHHHHHHHcCCHHHHHHHHHcCCcccCCCCCCCCcHHHHHHHCCCHHHH
Q 004365 56 GQEEIVEDLVRIIKEKQQLEALTI-GDERGSTPLHIAAGLGNVSMCKCIATADRKLIGERNHENETPFFLAALHGHKDAF 134 (759)
Q Consensus 56 g~~~iv~~Ll~~g~~~~~~~~~~~-~d~~G~TpLh~Aa~~g~~eiv~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv 134 (759)
|+.+++++|+++| .+++. .|.+|+||||+||..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++
T Consensus 2 g~~~~i~~Ll~~g------~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v 74 (223)
T 2f8y_A 2 DAPAVISDFIYQG------ASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVF 74 (223)
T ss_dssp ---CCEETTEETT------CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred CcHHHHHHHHHcC------CCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHH
Confidence 4455555555554 33333 255666666666666666666666666655 556666666666666666666666
Q ss_pred HHHHhcCC-CCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccccCCCCcHHHHHHhCCC
Q 004365 135 LCLHCLCA-SVDDGYTYSRRNDGETILHCAISGDYFDLAFQIIHLYEKLVNSVNEKGVSPLHVLATKPN 202 (759)
Q Consensus 135 ~~Ll~~ga-~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~~~ 202 (759)
++|+++++ +++ .++..|.||||+|+..|+.+++++|++ .+.+++..|..|.||||+|+..++
T Consensus 75 ~~Ll~~~~~~~~-----~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~ 137 (223)
T 2f8y_A 75 QILIRNRATDLD-----ARMHDGTTPLILAARLAVEGMLEDLIN-SHADVNAVDDLGKSALHWAAAVNN 137 (223)
T ss_dssp HHHHHBTTSCTT-----CCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCTTCBCTTSCBHHHHHHHTTC
T ss_pred HHHHHcCCCCcc-----cCCCCCCcHHHHHHHhCcHHHHHHHHH-cCCCCcCcCCCCCcHHHHHHHcCC
Confidence 66666555 444 555566666666666666666666665 345566666666666666666553
No 35
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=6e-36 Score=309.70 Aligned_cols=139 Identities=13% Similarity=0.031 Sum_probs=122.6
Q ss_pred HHHHHHHHHHhhhhcccccCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCcccCCCCCCCCcHHHHHHHCCCHHHHHHH
Q 004365 58 EEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCIATADRKLIGERNHENETPFFLAALHGHKDAFLCL 137 (759)
Q Consensus 58 ~~iv~~Ll~~g~~~~~~~~~~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~L 137 (759)
.+++++|.+ .+++.+|.+|+||||+||..|+.+++++|+++|++ ++.+| |+||||+|+..|+.+++++|
T Consensus 13 ~~v~~lL~~--------~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~--g~t~L~~A~~~g~~~~v~~L 81 (285)
T 3kea_A 13 KQLKSFLSS--------KDTFKADVHGHSASYYAIADNNVRLVCTLLNAGAL-KNLLE--NEFPLHQAATLEDTKIVKIL 81 (285)
T ss_dssp HHHHHHHHS--------TTTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGG-GSCCT--TCCHHHHHTTSSSCHHHHHH
T ss_pred HHHHHHHHh--------CCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCCC--CCCHHHHHHHcCCHHHHHHH
Confidence 455555554 35899999999999999999999999999999998 88774 99999999999999999999
Q ss_pred HhcCCCCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccccCCC-CcHHHHHHhCCCCCccCchHHHHHHH
Q 004365 138 HCLCASVDDGYTYSRRNDGETILHCAISGDYFDLAFQIIHLYEKLVNSVNEKG-VSPLHVLATKPNAFRSGSHLGRCIGT 216 (759)
Q Consensus 138 l~~ga~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G-~TpLh~Aa~~~~~~~~~~~~~~~~~L 216 (759)
+++|++++ .+|..|+||||+|+..|+.+++++|+++ +++++.+|..| .||||+|+..|+ .+++++|
T Consensus 82 l~~ga~~~-----~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~g~~t~L~~A~~~~~-------~~~v~~L 148 (285)
T 3kea_A 82 LFSGLDDS-----QFDDKGNTALYYAVDSGNMQTVKLFVKK-NWRLMFYGKTGWKTSFYHAVMLND-------VSIVSYF 148 (285)
T ss_dssp HHTTCCTT-----CCCTTSCCHHHHHHHTTCHHHHHHHHHH-CGGGGGCSSSGGGSHHHHHHHTTC-------HHHHHHH
T ss_pred HHCCCCCC-----CcCCCCCcHHHHHHHcCCHHHHHHHHhc-CCCCCccCCCCCCCHHHHHHHcCC-------HHHHHHH
Confidence 99999999 8999999999999999999999999996 78899999999 899999999985 4455444
Q ss_pred HhcC
Q 004365 217 IYHC 220 (759)
Q Consensus 217 l~~g 220 (759)
+++|
T Consensus 149 l~~g 152 (285)
T 3kea_A 149 LSEI 152 (285)
T ss_dssp HTTS
T ss_pred HhCC
Confidence 4443
No 36
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=3.4e-35 Score=303.81 Aligned_cols=209 Identities=17% Similarity=0.095 Sum_probs=183.4
Q ss_pred ccHHHHHHHHcCCHHHHHHHHhhCcCcc---ccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhcccccCccCCCCCCh
Q 004365 10 LKKDLFKRAMKGEWKEVVKNYEKDERIH---KVKITRSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGST 86 (759)
Q Consensus 10 ~~~~L~~aa~~g~~~~v~~lL~~~~~~~---~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~d~~G~T 86 (759)
..+|||.|+..|+.+.|+.|+.. +.+ ++.+|..|+||||+||..|+.++|++|+++| ++++.+|..|+|
T Consensus 9 g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g------a~~~~~~~~g~t 80 (282)
T 1oy3_D 9 GDTALHLAVIHQHEPFLDFLLGF--SAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAG------AGVLVAERGGHT 80 (282)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHHH--HTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTT------CCSSCCCTTSCC
T ss_pred CCcHHHHHHHcCCHHHHHHHHhc--CCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcC------CCCCCCCCCCCC
Confidence 46899999999999999999987 444 7888999999999999999999999999997 789999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCc----------------------------------------------ccCCCCCCCCc
Q 004365 87 PLHIAAGLGNVSMCKCIATADRK----------------------------------------------LIGERNHENET 120 (759)
Q Consensus 87 pLh~Aa~~g~~eiv~~Ll~~g~~----------------------------------------------~~~~~d~~G~T 120 (759)
|||+|+..|+.+++++|+++++. .++.+|..|+|
T Consensus 81 pL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t 160 (282)
T 1oy3_D 81 ALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHT 160 (282)
T ss_dssp HHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCC
T ss_pred HHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcC
Confidence 99999999999999999998764 26788999999
Q ss_pred HHHHHHHCCCHHHHHHHHhcCCCCCCCCccccCC-CCCcHHHHHHHcCCHHHHHHHHHhcCcCcccccCCCCcHHHHHHh
Q 004365 121 PFFLAALHGHKDAFLCLHCLCASVDDGYTYSRRN-DGETILHCAISGDYFDLAFQIIHLYEKLVNSVNEKGVSPLHVLAT 199 (759)
Q Consensus 121 pLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~d~-~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~Aa~ 199 (759)
|||+|+..|+.++|++|+++|++++ .++. .|+||||+|+..|+.+++++|+++ |++++.+|..|.||||+|+.
T Consensus 161 ~L~~A~~~g~~~~v~~Ll~~g~~~~-----~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~-gad~~~~d~~g~tpL~~A~~ 234 (282)
T 1oy3_D 161 PLHVAVIHKDAEMVRLLRDAGADLN-----KPEPTCGRTPLHLAVEAQAASVLELLLKA-GADPTARMYGGRTPLGSALL 234 (282)
T ss_dssp HHHHHHHTTCHHHHHHHHHHTCCTT-----CCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCC-----CCCCCCCcCHHHHHHHcCCHHHHHHHHHc-CCCCcccccCCCCHHHHHHH
Confidence 9999999999999999999999998 7775 499999999999999999999995 88899999999999999999
Q ss_pred CCCCCccCchHHHHHHHHhcCcCccchhhhhhhhhhhhhhccccCCCCcchHhH
Q 004365 200 KPNAFRSGSHLGRCIGTIYHCIFVDKLQEETSYDQYQLETSKKQTNCPENYETC 253 (759)
Q Consensus 200 ~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~~ 253 (759)
.++ .+++++|+++|++++..+. .|.||+.++..
T Consensus 235 ~~~-------~~~v~~Ll~~ga~~~~~~~--------------~g~tpl~~a~~ 267 (282)
T 1oy3_D 235 RPN-------PILARLLRAHGAPEPEDGG--------------DKLSPCSSSGS 267 (282)
T ss_dssp SSC-------HHHHHHHHHTTCCCCCCC--------------------------
T ss_pred cCC-------cHHHHHHHHcCCCcCcCCC--------------cccccccccCC
Confidence 995 9999999999999998775 77889988755
No 37
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=4.4e-35 Score=291.89 Aligned_cols=180 Identities=21% Similarity=0.212 Sum_probs=153.7
Q ss_pred HHHHHHHHhhCcCccccc-cCCCCChHHHHHHHcCCHHHHHHHHHHhhhhcccccCccCCCCCChHHHHHHHcCCHHHHH
Q 004365 23 WKEVVKNYEKDERIHKVK-ITRSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCK 101 (759)
Q Consensus 23 ~~~v~~lL~~~~~~~~~~-~d~~g~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~d~~G~TpLh~Aa~~g~~eiv~ 101 (759)
.+.++.++.+ +.+++. .|.+|+||||+||..|+.++|++|+++| ++++.+|..|+||||+|+..|+.++++
T Consensus 4 ~~~i~~Ll~~--g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g------~~~~~~~~~g~t~L~~A~~~~~~~~v~ 75 (223)
T 2f8y_A 4 PAVISDFIYQ--GASLHNQTDRTGETALHLAARYSRSDAAKRLLEAS------ADANIQDNMGRTPLHAAVSADAQGVFQ 75 (223)
T ss_dssp -CCEETTEET--TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT------CCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHc--CCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcC------CCCCCcCCCCCCHHHHHHHcCCHHHHH
Confidence 3344444544 555554 4889999999999999999999999986 778889999999999999999999999
Q ss_pred HHHHcCCcccCCCCCCCCcHHHHHHHCCCHHHHHHHHhcCCCCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCc
Q 004365 102 CIATADRKLIGERNHENETPFFLAALHGHKDAFLCLHCLCASVDDGYTYSRRNDGETILHCAISGDYFDLAFQIIHLYEK 181 (759)
Q Consensus 102 ~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~ 181 (759)
+|+++++..++.++..|.||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++ ++
T Consensus 76 ~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-----~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~ 149 (223)
T 2f8y_A 76 ILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN-----AVDDLGKSALHWAAAVNNVDAAVVLLKN-GA 149 (223)
T ss_dssp HHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-----CBCTTSCBHHHHHHHTTCHHHHHHHHHT-TC
T ss_pred HHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCc-----CcCCCCCcHHHHHHHcCCHHHHHHHHHc-CC
Confidence 99999986689999999999999999999999999999999998 8899999999999999999999999995 78
Q ss_pred CcccccCCCCcHHHHHHhCCCCCccCchHHHHHHHHhcCcCc
Q 004365 182 LVNSVNEKGVSPLHVLATKPNAFRSGSHLGRCIGTIYHCIFV 223 (759)
Q Consensus 182 ~~~~~d~~G~TpLh~Aa~~~~~~~~~~~~~~~~~Ll~~ga~~ 223 (759)
+++.+|..|.||||+|+..|+ .+++++|+++|+++
T Consensus 150 ~~~~~~~~g~t~L~~A~~~~~-------~~~v~~Ll~~ga~~ 184 (223)
T 2f8y_A 150 NKDMQNNREETPLFLAAREGS-------YETAKVLLDHFANR 184 (223)
T ss_dssp CTTCCCTTCCCHHHHHHHHTC-------HHHHHHHHHTTCCT
T ss_pred CCCCcCCCCcCHHHHHHHcCC-------HHHHHHHHHcCCCC
Confidence 899999999999999999885 55666665555544
No 38
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=7.7e-36 Score=300.20 Aligned_cols=82 Identities=10% Similarity=0.137 Sum_probs=64.8
Q ss_pred CCCcHHHHHHHcCcHHHHHHHHHHCCcceecccCCCCcchhHHHHcCChhHHHHHHcCCCcccchhccccCCCCcHhHHH
Q 004365 451 KRETPILIAAKNGITEIVEKILESFPVAIHDINSEKKNIVLLAVENRQPHVYQLLLKTTIMKDSVFRKVDDQGNSALHLA 530 (759)
Q Consensus 451 ~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~d~~G~TpLH~Av~~~~~~iv~~Ll~~~~~~~~~~n~~D~~G~TpLh~A 530 (759)
.|.||||+|+..|+.++|++|+++ +.+++.+|..|+||||+|+.+|+.+++++|+++|+ +.....++.+|.||.+.+
T Consensus 150 ~g~tpL~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga--~~~~~~~~~~~~~~~~~~ 226 (236)
T 1ikn_D 150 NGRTALHLAVDLQNPDLVSLLLKC-GADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTL--ENLQMLPESEDEESYDTE 226 (236)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHTT-TCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSC--GGGSSCCCCCTTTCCCCC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcccCCCCCHHHHHHccCchHHHHHHHHcch--hhhhcCCccchHHHHhhh
Confidence 488888888888888888888887 77788888899999999999999999999999987 333458888899988887
Q ss_pred HhcCC
Q 004365 531 ATLGD 535 (759)
Q Consensus 531 a~~g~ 535 (759)
.....
T Consensus 227 ~~~~~ 231 (236)
T 1ikn_D 227 SEFTE 231 (236)
T ss_dssp -----
T ss_pred ccccc
Confidence 76544
No 39
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=2.2e-34 Score=300.64 Aligned_cols=145 Identities=19% Similarity=0.183 Sum_probs=126.8
Q ss_pred HHHHHcCCHHHHHHHHHHhhhhccc---ccCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCcccCCCCCCCCcHHHHHH
Q 004365 50 HIAVSDGQEEIVEDLVRIIKEKQQL---EALTIGDERGSTPLHIAAGLGNVSMCKCIATADRKLIGERNHENETPFFLAA 126 (759)
Q Consensus 50 h~Aa~~g~~~iv~~Ll~~g~~~~~~---~~~~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~g~~~~~~~d~~G~TpLh~Aa 126 (759)
+.++..|+.+.++.++....+.... ......+..|.||||.||..|+.+++++|+++|++ ++.+|..|.||||+||
T Consensus 3 ~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~ 81 (299)
T 1s70_B 3 MADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGAD-INYANVDGLTALHQAC 81 (299)
T ss_dssp SHHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCC-TTCBCTTCCBHHHHHH
T ss_pred hhHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHH
Confidence 3577888888888888875432211 11222345688999999999999999999999998 9999999999999999
Q ss_pred HCCCHHHHHHHHhcCCCCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccccCCCCcHHHHHHhCC
Q 004365 127 LHGHKDAFLCLHCLCASVDDGYTYSRRNDGETILHCAISGDYFDLAFQIIHLYEKLVNSVNEKGVSPLHVLATKP 201 (759)
Q Consensus 127 ~~g~~~iv~~Ll~~ga~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~~ 201 (759)
..|+.++|++|+++|++++ .+|..|.||||+|+..|+.+++++|+++ +++++..|..|.||||+|+..+
T Consensus 82 ~~g~~~~v~~Ll~~ga~~~-----~~~~~g~tpL~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~ 150 (299)
T 1s70_B 82 IDDNVDMVKFLVENGANIN-----QPDNEGWIPLHAAASCGYLDIAEYLISQ-GAHVGAVNSEGDTPLDIAEEEA 150 (299)
T ss_dssp HTTCHHHHHHHHHTTCCTT-----CCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHCCSHH
T ss_pred HcCCHHHHHHHHHCCCCCC-----CCCCCCCcHHHHHHHcCCHHHHHHHHhC-CCCCCCcCCCCCCHHHHHHhcc
Confidence 9999999999999999999 8999999999999999999999999995 7889999999999999999766
No 40
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=6.6e-34 Score=286.48 Aligned_cols=191 Identities=20% Similarity=0.145 Sum_probs=170.9
Q ss_pred cHHHHHHHHcCCHHHHHHHHhhCcCccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhcccccCcc-CCCCCChHHH
Q 004365 11 KKDLFKRAMKGEWKEVVKNYEKDERIHKVKITRSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTI-GDERGSTPLH 89 (759)
Q Consensus 11 ~~~L~~aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~-~d~~G~TpLh 89 (759)
.++|+.|+..|+.+.++.++.. +.+++..+..|.||||+|+..|+.++|++|+++| .+++. .+..|+||||
T Consensus 10 ~~~l~~A~~~g~~~~~~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~------~~~~~~~~~~~~t~L~ 81 (240)
T 3eu9_A 10 TWDIVKATQYGIYERCRELVEA--GYDVRQPDKENVTLLHWAAINNRIDLVKYYISKG------AIVDQLGGDLNSTPLH 81 (240)
T ss_dssp GCCHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT------CCTTCCBTTTTBCHHH
T ss_pred chHHHHHHHcCChHHHHHHHHc--CCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcC------CcchhhcCCcCCChhH
Confidence 5789999999999999999987 7889999999999999999999999999999987 44443 4456999999
Q ss_pred HHHHcCCHHHHHHHHHcCCcccCCCCCCCCcHHHHHHHCCCHHHHHHHHhcCCCCCCCCccccCCCCCcHHHHHHHcCC-
Q 004365 90 IAAGLGNVSMCKCIATADRKLIGERNHENETPFFLAALHGHKDAFLCLHCLCASVDDGYTYSRRNDGETILHCAISGDY- 168 (759)
Q Consensus 90 ~Aa~~g~~eiv~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~d~~g~TpLh~A~~~g~- 168 (759)
+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..++
T Consensus 82 ~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~-----~~~~~g~t~l~~a~~~~~~ 155 (240)
T 3eu9_A 82 WATRQGHLSMVVQLMKYGAD-PSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVD-----MMDQNGMTPLMWAAYRTHS 155 (240)
T ss_dssp HHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-----CCCTTSCCHHHHHHHHCCS
T ss_pred HHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCcc-----ccCCCCCcHHHHHHHhCCh
Confidence 99999999999999999999 89999999999999999999999999999999998 899999999999997766
Q ss_pred HHHHHHHHHhcCcCcccccC-CCCcHHHHHHhCCCCCccCchHHHHHHHHhcCcCc
Q 004365 169 FDLAFQIIHLYEKLVNSVNE-KGVSPLHVLATKPNAFRSGSHLGRCIGTIYHCIFV 223 (759)
Q Consensus 169 ~~iv~~Ll~~~~~~~~~~d~-~G~TpLh~Aa~~~~~~~~~~~~~~~~~Ll~~ga~~ 223 (759)
.+++++|++ .+.+++..+. .|.||||+|+..|+ .+++++|+++|+++
T Consensus 156 ~~~~~~L~~-~~~~~~~~~~~~g~t~L~~A~~~~~-------~~~v~~Ll~~g~~~ 203 (240)
T 3eu9_A 156 VDPTRLLLT-FNVSVNLGDKYHKNTALHWAVLAGN-------TTVISLLLEAGANV 203 (240)
T ss_dssp STTHHHHHH-TTCCTTCCCTTTCCCHHHHHHHHTC-------HHHHHHHHHHTCCT
T ss_pred HHHHHHHHh-cCCCcchhhccCCCcHHHHHHHcCC-------HHHHHHHHHcCCCC
Confidence 889999998 5778999997 99999999999985 55666665555544
No 41
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=4.1e-34 Score=270.00 Aligned_cols=159 Identities=25% Similarity=0.315 Sum_probs=120.1
Q ss_pred hHHHHHHHcCCHHHHHHHHHHhhhhcccccCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCcccCCCCCCCCcHHHHHH
Q 004365 47 TALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCIATADRKLIGERNHENETPFFLAA 126 (759)
Q Consensus 47 TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~g~~~~~~~d~~G~TpLh~Aa 126 (759)
++|+.||+.|+.++|+.|+++| +++|.+|.+|+||||+|+..|+.+++++|+++|++ ++.+|.+|+||||+|+
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~G------advn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad-~~~~d~~g~TpLh~A~ 78 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENG------ADVNASDSDGRTPLHHAAENGHKEVVKLLISKGAD-VNAKDSDGRTPLHHAA 78 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTT------CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHCC------CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccc-hhhhccCCCCHHHHHH
Confidence 4677788888888888888776 66777778888888888888888888888887777 7777778888888888
Q ss_pred HCCCHHHHHHHHhcCCCCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccccCCCCcHHHHHHhCCCCCcc
Q 004365 127 LHGHKDAFLCLHCLCASVDDGYTYSRRNDGETILHCAISGDYFDLAFQIIHLYEKLVNSVNEKGVSPLHVLATKPNAFRS 206 (759)
Q Consensus 127 ~~g~~~iv~~Ll~~ga~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~~~~~~~ 206 (759)
..|+.++|++|+++|++++ .+|.+|+||||+|+..|+.+++++|+++ |++++.+|.+|+||||+|++.|+
T Consensus 79 ~~g~~~~v~~Ll~~gadvn-----~~d~~G~TpLh~A~~~g~~~~v~~Ll~~-gad~~~~d~~G~TpL~~A~~~g~---- 148 (169)
T 4gpm_A 79 ENGHKEVVKLLISKGADVN-----AKDSDGRTPLHHAAENGHKEVVKLLISK-GADVNTSDSDGRTPLDLAREHGN---- 148 (169)
T ss_dssp HTTCHHHHHHHHHTTCCTT-----CCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTC----
T ss_pred HcCCHHHHHHHHHCcCCCC-----CCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCccccCCCCCCHHHHHHHcCC----
Confidence 8888888888888887777 7777788888888888888888888773 66777778888888888887774
Q ss_pred CchHHHHHHHHhcCcCccc
Q 004365 207 GSHLGRCIGTIYHCIFVDK 225 (759)
Q Consensus 207 ~~~~~~~~~Ll~~ga~~~~ 225 (759)
.+++++|+++|++++.
T Consensus 149 ---~~iv~~Ll~~GA~ie~ 164 (169)
T 4gpm_A 149 ---EEVVKLLEKQGGWLEH 164 (169)
T ss_dssp ---HHHHHHHHTC------
T ss_pred ---HHHHHHHHHCCCCcCC
Confidence 7788888888877754
No 42
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=1.3e-35 Score=298.45 Aligned_cols=175 Identities=21% Similarity=0.272 Sum_probs=148.6
Q ss_pred cccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhcccccCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCcccCCCCCCC
Q 004365 39 VKITRSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCIATADRKLIGERNHEN 118 (759)
Q Consensus 39 ~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~g~~~~~~~d~~G 118 (759)
+.+|.+|+||||+|+..|+.++++.|++.+.. .+++++.+|..|+||||+||..|+.+++++|+++|++ ++.+|..|
T Consensus 2 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~--~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g 78 (236)
T 1ikn_D 2 QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKG--DLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCD-PELRDFRG 78 (236)
T ss_dssp -----CCCCTTHHHHHTTCSSSSSCCCC-------CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCC-SCCCCTTC
T ss_pred CcCCCCCCchhHHHHHcCChhHHHHHHHHhhc--cHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCC
Confidence 35689999999999999999999999998742 2357999999999999999999999999999999999 99999999
Q ss_pred CcHHHHHHHCCCHHHHHHHHhcCCCCCCC-CccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccccC-CCCcHHHH
Q 004365 119 ETPFFLAALHGHKDAFLCLHCLCASVDDG-YTYSRRNDGETILHCAISGDYFDLAFQIIHLYEKLVNSVNE-KGVSPLHV 196 (759)
Q Consensus 119 ~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~-~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~-~G~TpLh~ 196 (759)
+||||+|+..|+.+++++|+++|++++.. ..+..|..|.||||+|+..|+.+++++|+++ +++++.+|. .|.||||+
T Consensus 79 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~~g~tpL~~ 157 (236)
T 1ikn_D 79 NTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSL-GADVNAQEPCNGRTALHL 157 (236)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTTCCCHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCCHHHH
Confidence 99999999999999999999999875311 2347889999999999999999999999995 788999998 99999999
Q ss_pred HHhCCCCCccCchHHHHHHHHhcCcCcc
Q 004365 197 LATKPNAFRSGSHLGRCIGTIYHCIFVD 224 (759)
Q Consensus 197 Aa~~~~~~~~~~~~~~~~~Ll~~ga~~~ 224 (759)
|+..|+ .+++++|+++|++++
T Consensus 158 A~~~~~-------~~~v~~Ll~~ga~~~ 178 (236)
T 1ikn_D 158 AVDLQN-------PDLVSLLLKCGADVN 178 (236)
T ss_dssp HHHTTC-------HHHHHHHHTTTCCSC
T ss_pred HHHcCC-------HHHHHHHHHcCCCCC
Confidence 999985 667777666666553
No 43
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=1.1e-35 Score=314.03 Aligned_cols=161 Identities=16% Similarity=0.108 Sum_probs=129.4
Q ss_pred CCCcCCccccc---HHHHHHHHcCCHHHHHHHHhhCcCccccc-----------------cCCCCChHHHHHHHcCCHHH
Q 004365 1 MATGIDIDQLK---KDLFKRAMKGEWKEVVKNYEKDERIHKVK-----------------ITRSGGTALHIAVSDGQEEI 60 (759)
Q Consensus 1 ~~~g~d~~~~~---~~L~~aa~~g~~~~v~~lL~~~~~~~~~~-----------------~d~~g~TpLh~Aa~~g~~~i 60 (759)
+++|+|++..+ .++++ |+.+.|+.||.+ +++++. ......+.+|+|+..+..++
T Consensus 39 l~~ga~i~~~~~~g~~~~~----g~~~~v~~Ll~~--g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 112 (327)
T 1sw6_A 39 LSSPLKIMKALPSPVVNDN----EQKMKLEAFLQR--LLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEV 112 (327)
T ss_dssp TTSSCCCEECBCCCCCCCH----HHHHHHHHHHHH--HHC-------------------------------CHHHHHHHH
T ss_pred hhCCcccccCCCCCCcccC----chhHHHHHHHHh--ccCCccccchHhhhcccccccccccCCccchhHHHHHhhHHHH
Confidence 46799988652 22222 888899988887 555443 11122234688888888999
Q ss_pred HHHHHHHhhhhcccccCcc-CCCCCChHHHHHHHcCCHHHHHHHHHcCCcccCCCCCCCCcHHHHHHHCCC---HHHHHH
Q 004365 61 VEDLVRIIKEKQQLEALTI-GDERGSTPLHIAAGLGNVSMCKCIATADRKLIGERNHENETPFFLAALHGH---KDAFLC 136 (759)
Q Consensus 61 v~~Ll~~g~~~~~~~~~~~-~d~~G~TpLh~Aa~~g~~eiv~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~---~~iv~~ 136 (759)
+++|++.| +++|. +|.+|+||||+||..|+.++|++|+++|++ ++.+|..|+||||+|+.+|+ .++++.
T Consensus 113 ~~~l~~~g------~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad-~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ 185 (327)
T 1sw6_A 113 NDAFPNTQ------LNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSN-RLYGDNMGESCLVKAVKSVNNYDSGTFEA 185 (327)
T ss_dssp HHHCTTSC------CCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTBCCTTCCCHHHHHHHSSHHHHTTCHHH
T ss_pred HHHHHhcC------CCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHhcccccHHHHHH
Confidence 99999876 88999 899999999999999999999999999999 99999999999999999999 788888
Q ss_pred HHhcC-CCCCCCCccccCCCCCcHHHHHHH----cCCHHHHHHHHHhc
Q 004365 137 LHCLC-ASVDDGYTYSRRNDGETILHCAIS----GDYFDLAFQIIHLY 179 (759)
Q Consensus 137 Ll~~g-a~~~~~~~~~~d~~g~TpLh~A~~----~g~~~iv~~Ll~~~ 179 (759)
|++.+ ++++ .+|..|+||||+|+. .|+.+++++|++..
T Consensus 186 ll~~~~~~~~-----~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~ 228 (327)
T 1sw6_A 186 LLDYLYPCLI-----LEDSMNRTILHHIIITSGMTGCSAAAKYYLDIL 228 (327)
T ss_dssp HHHHHGGGGG-----EECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHhhhcccc-----CCCCCCCCHHHHHHHHccccccHHHHHHHHHHH
Confidence 88887 6666 899999999999999 99999999999853
No 44
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=9.5e-34 Score=284.09 Aligned_cols=153 Identities=20% Similarity=0.196 Sum_probs=137.3
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHHhhhhcccccCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCccc----CCCCCCCC
Q 004365 44 SGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCIATADRKLI----GERNHENE 119 (759)
Q Consensus 44 ~g~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~g~~~~----~~~d~~G~ 119 (759)
.|+||||+||+.|+.++|+.|++.. +.+++.+|.+|+||||+||..|+.+++++|+++|++.. +.+|..|+
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~-----g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~ 76 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFE-----GCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQ 76 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTT-----CSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhc-----CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCc
Confidence 5899999999999999999999871 37899999999999999999999999999999998832 67788999
Q ss_pred cHHHHHHHCCCHHHHHHHHhcCCCCCCCC--------ccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccccCCCC
Q 004365 120 TPFFLAALHGHKDAFLCLHCLCASVDDGY--------TYSRRNDGETILHCAISGDYFDLAFQIIHLYEKLVNSVNEKGV 191 (759)
Q Consensus 120 TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~--------~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~ 191 (759)
||||+|+..|+.+++++|+++|++++..+ .+..|..|.||||+|+..|+.+++++|+++ |++++.+|..|.
T Consensus 77 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~d~~g~ 155 (232)
T 2rfa_A 77 TALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEH-GADIRAQDSLGN 155 (232)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSC
T ss_pred CHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCC
Confidence 99999999999999999999999998211 011234899999999999999999999995 888999999999
Q ss_pred cHHHHHHhCCC
Q 004365 192 SPLHVLATKPN 202 (759)
Q Consensus 192 TpLh~Aa~~~~ 202 (759)
||||+|+..++
T Consensus 156 t~L~~A~~~~~ 166 (232)
T 2rfa_A 156 TVLHILILQPN 166 (232)
T ss_dssp CHHHHHHTCSC
T ss_pred CHHHHHHHcCC
Confidence 99999999985
No 45
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=1.5e-33 Score=266.14 Aligned_cols=162 Identities=25% Similarity=0.311 Sum_probs=150.6
Q ss_pred cccHHHHHHHHcCCHHHHHHHHhhCcCccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhcccccCccCCCCCChHH
Q 004365 9 QLKKDLFKRAMKGEWKEVVKNYEKDERIHKVKITRSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPL 88 (759)
Q Consensus 9 ~~~~~L~~aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~d~~G~TpL 88 (759)
..+++|+.||..|+.+.|+.||.. |+++|.+|.+|+||||+|+..|+.+++++|+++| ++++.+|.+|+|||
T Consensus 3 dlg~~L~~Aa~~G~~~~v~~Ll~~--Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~g------ad~~~~d~~g~TpL 74 (169)
T 4gpm_A 3 ELGKRLIEAAENGNKDRVKDLIEN--GADVNASDSDGRTPLHHAAENGHKEVVKLLISKG------ADVNAKDSDGRTPL 74 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT------CCTTCCCTTSCCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHC--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcc------cchhhhccCCCCHH
Confidence 346889999999999999999988 8999999999999999999999999999999987 78999999999999
Q ss_pred HHHHHcCCHHHHHHHHHcCCcccCCCCCCCCcHHHHHHHCCCHHHHHHHHhcCCCCCCCCccccCCCCCcHHHHHHHcCC
Q 004365 89 HIAAGLGNVSMCKCIATADRKLIGERNHENETPFFLAALHGHKDAFLCLHCLCASVDDGYTYSRRNDGETILHCAISGDY 168 (759)
Q Consensus 89 h~Aa~~g~~eiv~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~d~~g~TpLh~A~~~g~ 168 (759)
|+||..|+.+++++|+++|++ +|.+|.+|+||||+||..|+.++|++|+++|++++ .+|.+|+||||+|+..|+
T Consensus 75 h~A~~~g~~~~v~~Ll~~gad-vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~-----~~d~~G~TpL~~A~~~g~ 148 (169)
T 4gpm_A 75 HHAAENGHKEVVKLLISKGAD-VNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVN-----TSDSDGRTPLDLAREHGN 148 (169)
T ss_dssp HHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-----CCCTTSCCHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHHCcCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-----ccCCCCCCHHHHHHHcCC
Confidence 999999999999999999999 99999999999999999999999999999999999 899999999999999999
Q ss_pred HHHHHHHHHhcCcCccc
Q 004365 169 FDLAFQIIHLYEKLVNS 185 (759)
Q Consensus 169 ~~iv~~Ll~~~~~~~~~ 185 (759)
.+++++|+++ |++++.
T Consensus 149 ~~iv~~Ll~~-GA~ie~ 164 (169)
T 4gpm_A 149 EEVVKLLEKQ-GGWLEH 164 (169)
T ss_dssp HHHHHHHHTC-------
T ss_pred HHHHHHHHHC-CCCcCC
Confidence 9999999995 666654
No 46
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=2.5e-33 Score=274.29 Aligned_cols=191 Identities=16% Similarity=0.117 Sum_probs=179.2
Q ss_pred ccHHHHHHHHcCCHHHHHHHHhhCcCccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhcccccCccCCCCCChHHH
Q 004365 10 LKKDLFKRAMKGEWKEVVKNYEKDERIHKVKITRSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLH 89 (759)
Q Consensus 10 ~~~~L~~aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~d~~G~TpLh 89 (759)
..++|+.|+..|+.+.++.+|.+. +.+++..|.+|+||||+||..|+.++|++|+++| ++++.+|..|+||||
T Consensus 5 ~~~~L~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g------~~~~~~~~~g~t~l~ 77 (201)
T 3hra_A 5 EVGALLEAANQRDTKKVKEILQDT-TYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRG------ADINLQNSISDSPYL 77 (201)
T ss_dssp CTTHHHHHHHTTCHHHHHHHHTCT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT------CCTTCCCTTSCCHHH
T ss_pred cccHHHHHHHhccHHHHHHHHHcC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC------CCCCCCCCCCCCHHH
Confidence 468999999999999999999883 5688999999999999999999999999999987 789999999999999
Q ss_pred HHHHcCCHHHHHHHHHcCCcccCCCCCCCCcHHHHHHHCCCHHHHHHHHhcC-CCCCCCCccccCCCCCcHHHHHHHcCC
Q 004365 90 IAAGLGNVSMCKCIATADRKLIGERNHENETPFFLAALHGHKDAFLCLHCLC-ASVDDGYTYSRRNDGETILHCAISGDY 168 (759)
Q Consensus 90 ~Aa~~g~~eiv~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g-a~~~~~~~~~~d~~g~TpLh~A~~~g~ 168 (759)
+|+..|+.+++++|++++...++.+|..|.||||+|+..|+.+++++|+++| ++++ .+|..|+||||+|+..++
T Consensus 78 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-----~~~~~g~t~L~~A~~~~~ 152 (201)
T 3hra_A 78 YAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDID-----FQNDFGYTALIEAVGLRE 152 (201)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTT-----CCCTTSCCHHHHHHHSSC
T ss_pred HHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcC-----CCCCCCCCHHHHHHHhcc
Confidence 9999999999999996666559999999999999999999999999999999 8888 899999999999999998
Q ss_pred -----HHHHHHHHHhcCcCcccccCCCCcHHHHHHhCCCCCccCchHHHHHHHHhcC
Q 004365 169 -----FDLAFQIIHLYEKLVNSVNEKGVSPLHVLATKPNAFRSGSHLGRCIGTIYHC 220 (759)
Q Consensus 169 -----~~iv~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~~~~~~~~~~~~~~~~Ll~~g 220 (759)
.+++++|+++ |++++.+|..|.||||+|+..|+ .+++++|+++|
T Consensus 153 ~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~~~-------~~~~~~Ll~~G 201 (201)
T 3hra_A 153 GNQLYQDIVKLLMEN-GADQSIKDNSGRTAMDYANQKGY-------TEISKILAQYN 201 (201)
T ss_dssp CSHHHHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTC-------HHHHHHHHTCC
T ss_pred chhhHHHHHHHHHHC-CCCCCccCCCCCCHHHHHHHcCC-------HhHHHHHHhcC
Confidence 9999999995 78899999999999999999995 99999999876
No 47
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=2e-33 Score=281.69 Aligned_cols=201 Identities=21% Similarity=0.186 Sum_probs=179.3
Q ss_pred cHHHHHHHHcCCHHHHHHHHhhCcCccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhcccccCccCCCCCChHHHH
Q 004365 11 KKDLFKRAMKGEWKEVVKNYEKDERIHKVKITRSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHI 90 (759)
Q Consensus 11 ~~~L~~aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~d~~G~TpLh~ 90 (759)
.+|||.|+..|+.+.++.++.. .+.+++..|.+|+||||+||..|+.++|++|+++|++... ...+.+|..|+||||+
T Consensus 4 ~t~L~~A~~~g~~~~v~~Ll~~-~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~-~~~~~~~~~g~t~L~~ 81 (232)
T 2rfa_A 4 ESPLLLAAKENDVQALSKLLKF-EGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVF-EPMTSELYEGQTALHI 81 (232)
T ss_dssp TCHHHHHHHTTCHHHHHHHHTT-TCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGG-CCCCSTTTTTCCHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHh-cCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhcc-ccccccCCCCcCHHHH
Confidence 5799999999999999999987 4788999999999999999999999999999999854321 2347788999999999
Q ss_pred HHHcCCHHHHHHHHHcCCcccCCCCC-------------CCCcHHHHHHHCCCHHHHHHHHhcCCCCCCCCccccCCCCC
Q 004365 91 AAGLGNVSMCKCIATADRKLIGERNH-------------ENETPFFLAALHGHKDAFLCLHCLCASVDDGYTYSRRNDGE 157 (759)
Q Consensus 91 Aa~~g~~eiv~~Ll~~g~~~~~~~d~-------------~G~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~d~~g~ 157 (759)
|+..|+.+++++|+++|++ ++.++. .|+||||+|+..|+.+++++|+++|++++ .+|.+|+
T Consensus 82 A~~~~~~~~v~~Ll~~g~~-~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-----~~d~~g~ 155 (232)
T 2rfa_A 82 AVINQNVNLVRALLARGAS-VSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIR-----AQDSLGN 155 (232)
T ss_dssp HHHTTCHHHHHHHHHTTCC-TTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTT-----CCCTTSC
T ss_pred HHHcCCHHHHHHHHhCCCC-CCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-----CCCCCCC
Confidence 9999999999999999998 777765 79999999999999999999999999999 8999999
Q ss_pred cHHHHHHHcCCHHHH----HHHHHhcCcCc------ccccCCCCcHHHHHHhCCCCCccCchHHHHHHHHhcCcCccchh
Q 004365 158 TILHCAISGDYFDLA----FQIIHLYEKLV------NSVNEKGVSPLHVLATKPNAFRSGSHLGRCIGTIYHCIFVDKLQ 227 (759)
Q Consensus 158 TpLh~A~~~g~~~iv----~~Ll~~~~~~~------~~~d~~G~TpLh~Aa~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~ 227 (759)
||||+|+..|+.+++ ++|++. ++++ +.+|..|.||||+|+..|+ .+++++|+++|.+.....
T Consensus 156 t~L~~A~~~~~~~~~~~i~~~Ll~~-g~~~~~~~~~~~~~~~g~tpl~~A~~~g~-------~~~v~~Ll~~g~~~~~~~ 227 (232)
T 2rfa_A 156 TVLHILILQPNKTFACQMYNLLLSY-DGGDHLKSLELVPNNQGLTPFKLAGVEGN-------IVMFQHLMQKRKHIAAAH 227 (232)
T ss_dssp CHHHHHHTCSCHHHHHHHHHHHHHT-TCSCSSCCGGGCCCTTSCCHHHHHHHHTC-------HHHHHHHHHHHHHC----
T ss_pred CHHHHHHHcCChHHHHHHHHHHHhc-CCchhhhhhhccCCCCCCCHHHHHHHcCC-------HHHHHHHHhcCccchhhh
Confidence 999999999999988 999985 5556 6899999999999999995 999999999998765433
No 48
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=5.3e-33 Score=271.98 Aligned_cols=149 Identities=16% Similarity=0.186 Sum_probs=106.4
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHHHhhhhcccccCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCcccCCCCCCCCcH
Q 004365 42 TRSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCIATADRKLIGERNHENETP 121 (759)
Q Consensus 42 d~~g~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~g~~~~~~~d~~G~Tp 121 (759)
+..+.||||.||..|+.+.++.|++.+ ..+++.+|.+|+||||+||..|+.+++++|+++|++ ++.+|..|+||
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~-----~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~ 75 (201)
T 3hra_A 2 KTYEVGALLEAANQRDTKKVKEILQDT-----TYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGAD-INLQNSISDSP 75 (201)
T ss_dssp -CCCTTHHHHHHHTTCHHHHHHHHTCT-----TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCH
T ss_pred CcccccHHHHHHHhccHHHHHHHHHcC-----CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCH
Confidence 356677777777777777777777654 246777777777777777777777777777777776 77777777777
Q ss_pred HHHHHHCCCHHHHHHHH-hcCCCCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccccCCCCcHHHHHHhC
Q 004365 122 FFLAALHGHKDAFLCLH-CLCASVDDGYTYSRRNDGETILHCAISGDYFDLAFQIIHLYEKLVNSVNEKGVSPLHVLATK 200 (759)
Q Consensus 122 Lh~Aa~~g~~~iv~~Ll-~~ga~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~ 200 (759)
||+|+..|+.+++++|+ ..+++++ .+|..|.||||+|+..|+.+++++|+++++.+++.+|..|.||||+|+..
T Consensus 76 l~~A~~~~~~~~~~~Ll~~~~~~~~-----~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~ 150 (201)
T 3hra_A 76 YLYAGAQGRTEILAYMLKHATPDLN-----KHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGL 150 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCTT-----CCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHS
T ss_pred HHHHHHcCCHHHHHHHHhccCcccc-----cccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHh
Confidence 77777777777777777 4455665 67777777777777777777777777765466777777777777777766
Q ss_pred C
Q 004365 201 P 201 (759)
Q Consensus 201 ~ 201 (759)
+
T Consensus 151 ~ 151 (201)
T 3hra_A 151 R 151 (201)
T ss_dssp S
T ss_pred c
Confidence 5
No 49
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=100.00 E-value=4e-34 Score=294.43 Aligned_cols=161 Identities=17% Similarity=0.133 Sum_probs=136.0
Q ss_pred CccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhcccccCc----cCCCCCChHHHHHHHc---CCHHHHHHHHHcC
Q 004365 35 RIHKVKITRSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALT----IGDERGSTPLHIAAGL---GNVSMCKCIATAD 107 (759)
Q Consensus 35 ~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~----~~d~~G~TpLh~Aa~~---g~~eiv~~Ll~~g 107 (759)
++..+..|.+|+||||+||+.|+.++|+.|++.|.+.. .+++ .+|..|+||||+||.. |+.+++++|+++|
T Consensus 3 ~a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~--~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~g 80 (273)
T 2pnn_A 3 SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSK--KRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVA 80 (273)
T ss_dssp --------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSC--CCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHH
T ss_pred cccCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcc--cccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhh
Confidence 34456679999999999999999999999999875432 3343 4589999999999987 9999999999998
Q ss_pred Ccc------cCC----CCCCCCcHHHHHHHCCCHHHHHHHHhcCCCCCCCCccccCC--------------CCCcHHHHH
Q 004365 108 RKL------IGE----RNHENETPFFLAALHGHKDAFLCLHCLCASVDDGYTYSRRN--------------DGETILHCA 163 (759)
Q Consensus 108 ~~~------~~~----~d~~G~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~d~--------------~g~TpLh~A 163 (759)
++. ++. +|..|+||||+|+..|+.++|++|+++|++++ .++. .|.||||+|
T Consensus 81 a~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~-----~~~~~~~~~~~~~~~~~~~g~tpL~~A 155 (273)
T 2pnn_A 81 RKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQ-----AAANGDFFKKTKGRPGFYFGELPLSLA 155 (273)
T ss_dssp HHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTT-----CCBCSGGGSSCSSSCCCCSCBSHHHHH
T ss_pred ccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcC-----ccccccccccccccccccCCCCHHHHH
Confidence 652 232 67799999999999999999999999999998 6665 799999999
Q ss_pred HHcCCHHHHHHHHHh--cCcCcccccCCCCcHHHHHHhCCC
Q 004365 164 ISGDYFDLAFQIIHL--YEKLVNSVNEKGVSPLHVLATKPN 202 (759)
Q Consensus 164 ~~~g~~~iv~~Ll~~--~~~~~~~~d~~G~TpLh~Aa~~~~ 202 (759)
+..|+.+++++|++. .+++++.+|.+|+||||+|+..++
T Consensus 156 ~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~ 196 (273)
T 2pnn_A 156 ACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVAD 196 (273)
T ss_dssp HHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCC
T ss_pred HHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccC
Confidence 999999999999994 578899999999999999999774
No 50
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=100.00 E-value=4.8e-33 Score=283.50 Aligned_cols=145 Identities=21% Similarity=0.140 Sum_probs=130.5
Q ss_pred CCChHHHHHHHcCCHH----HHHHHHHHhhhhcccccCcc----CCCCCChHHHHHHHc---CCHHHHHHHHHcCCcccC
Q 004365 44 SGGTALHIAVSDGQEE----IVEDLVRIIKEKQQLEALTI----GDERGSTPLHIAAGL---GNVSMCKCIATADRKLIG 112 (759)
Q Consensus 44 ~g~TpLh~Aa~~g~~~----iv~~Ll~~g~~~~~~~~~~~----~d~~G~TpLh~Aa~~---g~~eiv~~Ll~~g~~~~~ 112 (759)
.|+||||+||..|+.+ ++++|++.| .+++. +|..|+||||+||.. |+.+++++|+++|++ ++
T Consensus 1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g------~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~-~~ 73 (256)
T 2etb_A 1 FDRDRLFSVVSRGVPEELTGLLEYLRWNS------KYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKD-SG 73 (256)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHT------CCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHH-TT
T ss_pred CCccHHHHHHHcCCHHHHHHHHHHHHHcC------CCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCc-cc
Confidence 4899999999999997 556666676 77887 899999999999999 999999999999987 44
Q ss_pred -----------CCCCCCCcHHHHHHHCCCHHHHHHHHhcCCCCCCCCccccCCC-------------CCcHHHHHHHcCC
Q 004365 113 -----------ERNHENETPFFLAALHGHKDAFLCLHCLCASVDDGYTYSRRND-------------GETILHCAISGDY 168 (759)
Q Consensus 113 -----------~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~d~~-------------g~TpLh~A~~~g~ 168 (759)
.+|..|+||||+|+..|+.++|++|+++|++++ .+|.. |.||||+|+..|+
T Consensus 74 ~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-----~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~ 148 (256)
T 2etb_A 74 NPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVH-----LRACGRFFQKHQGTCFYFGELPLSLAACTKQ 148 (256)
T ss_dssp CSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTT-----CCCCSGGGSCCSSSCCCSCSSHHHHHHHTTC
T ss_pred chhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCC-----cccccccccccccccccCCCCHHHHHHHcCC
Confidence 235789999999999999999999999999998 66665 9999999999999
Q ss_pred HHHHHHHHHh--cCcCcccccCCCCcHHHHHHhC
Q 004365 169 FDLAFQIIHL--YEKLVNSVNEKGVSPLHVLATK 200 (759)
Q Consensus 169 ~~iv~~Ll~~--~~~~~~~~d~~G~TpLh~Aa~~ 200 (759)
.+++++|+++ .|++++.+|.+|+||||+|+..
T Consensus 149 ~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~ 182 (256)
T 2etb_A 149 WDVVTYLLENPHQPASLEATDSLGNTVLHALVMI 182 (256)
T ss_dssp HHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcCccCCCCCCHHHHHHHc
Confidence 9999999995 5888999999999999999983
No 51
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=100.00 E-value=1e-32 Score=281.07 Aligned_cols=200 Identities=20% Similarity=0.196 Sum_probs=175.7
Q ss_pred cHHHHHHHHcCCHHHHHHHHh---hCcCccccc----cCCCCChHHHHHHHc---CCHHHHHHHHHHhhhhcc-----cc
Q 004365 11 KKDLFKRAMKGEWKEVVKNYE---KDERIHKVK----ITRSGGTALHIAVSD---GQEEIVEDLVRIIKEKQQ-----LE 75 (759)
Q Consensus 11 ~~~L~~aa~~g~~~~v~~lL~---~~~~~~~~~----~d~~g~TpLh~Aa~~---g~~~iv~~Ll~~g~~~~~-----~~ 75 (759)
.++||.|+..|+.+.|+.++. + .+.+++. .|.+|+||||+||.. |+.++|++|+++|++.+. ..
T Consensus 3 ~t~L~~A~~~g~~~~v~~ll~~l~~-~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~ 81 (256)
T 2etb_A 3 RDRLFSVVSRGVPEELTGLLEYLRW-NSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNA 81 (256)
T ss_dssp HHHHHHHHHHTCGGGGTTHHHHHHH-HTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGC
T ss_pred ccHHHHHHHcCCHHHHHHHHHHHHH-cCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccc
Confidence 589999999999985543333 3 2778887 899999999999999 999999999999976431 11
Q ss_pred cCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCcccCCCCCC-------------CCcHHHHHHHCCCHHHHHHHHh---
Q 004365 76 ALTIGDERGSTPLHIAAGLGNVSMCKCIATADRKLIGERNHE-------------NETPFFLAALHGHKDAFLCLHC--- 139 (759)
Q Consensus 76 ~~~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~g~~~~~~~d~~-------------G~TpLh~Aa~~g~~~iv~~Ll~--- 139 (759)
....+|..|+||||+||..|+.+++++|+++|++ ++.+|.. |+||||+|+..|+.+++++|++
T Consensus 82 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~ 160 (256)
T 2etb_A 82 QCTDEFYQGHSALHIAIEKRSLQCVKLLVENGAD-VHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPH 160 (256)
T ss_dssp CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSS
T ss_pred ccccccccCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccc
Confidence 1223557899999999999999999999999999 8999886 9999999999999999999999
Q ss_pred cCCCCCCCCccccCCCCCcHHHHHHH--cCCHH-------HHHHHHHhcCcCc-------ccccCCCCcHHHHHHhCCCC
Q 004365 140 LCASVDDGYTYSRRNDGETILHCAIS--GDYFD-------LAFQIIHLYEKLV-------NSVNEKGVSPLHVLATKPNA 203 (759)
Q Consensus 140 ~ga~~~~~~~~~~d~~g~TpLh~A~~--~g~~~-------iv~~Ll~~~~~~~-------~~~d~~G~TpLh~Aa~~~~~ 203 (759)
+|++++ .+|.+|+||||+|+. .++.+ ++++|+++ |+++ +.+|..|.||||+|+..|+
T Consensus 161 ~ga~~n-----~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~-ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~- 233 (256)
T 2etb_A 161 QPASLE-----ATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQM-GARLCPTVQLEEISNHQGLTPLKLAAKEGK- 233 (256)
T ss_dssp CCCCTT-----CCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHH-HHHHSTTCCGGGCCCTTSCCHHHHHHHTTC-
T ss_pred cCCCcC-----ccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHc-CCCcccccccccccCCCCCCHHHHHHHhCC-
Confidence 999999 899999999999999 88888 99999995 6778 8999999999999999995
Q ss_pred CccCchHHHHHHHHhcCcCccc
Q 004365 204 FRSGSHLGRCIGTIYHCIFVDK 225 (759)
Q Consensus 204 ~~~~~~~~~~~~Ll~~ga~~~~ 225 (759)
.+++++|+++|.+...
T Consensus 234 ------~~~v~~Ll~~g~~~~~ 249 (256)
T 2etb_A 234 ------IEIFRHILQREFSGAA 249 (256)
T ss_dssp ------HHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHhCCCCCCC
Confidence 9999999999986643
No 52
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=100.00 E-value=1.6e-32 Score=282.42 Aligned_cols=203 Identities=20% Similarity=0.235 Sum_probs=174.2
Q ss_pred cHHHHHHHHcCCHHHHHHHHhhC--cCcccc----ccCCCCChHHHHHHHc---CCHHHHHHHHHHhhhhcc-----ccc
Q 004365 11 KKDLFKRAMKGEWKEVVKNYEKD--ERIHKV----KITRSGGTALHIAVSD---GQEEIVEDLVRIIKEKQQ-----LEA 76 (759)
Q Consensus 11 ~~~L~~aa~~g~~~~v~~lL~~~--~~~~~~----~~d~~g~TpLh~Aa~~---g~~~iv~~Ll~~g~~~~~-----~~~ 76 (759)
.++||.|+..|+.+.|+.++... .+.+++ ..|..|+||||+||.. |+.++|++|+++|++.+. ...
T Consensus 14 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~ 93 (273)
T 2pnn_A 14 RRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNAS 93 (273)
T ss_dssp HHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCC
T ss_pred chHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcc
Confidence 68999999999999999888741 234443 3588999999999987 999999999999975321 122
Q ss_pred CccCCCCCChHHHHHHHcCCHHHHHHHHHcCCcccCCCCC--------------CCCcHHHHHHHCCCHHHHHHHHh---
Q 004365 77 LTIGDERGSTPLHIAAGLGNVSMCKCIATADRKLIGERNH--------------ENETPFFLAALHGHKDAFLCLHC--- 139 (759)
Q Consensus 77 ~~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~g~~~~~~~d~--------------~G~TpLh~Aa~~g~~~iv~~Ll~--- 139 (759)
...+|..|+||||+||..|+.+++++|+++|++ ++.++. .|+||||+|+..|+.++|++|++
T Consensus 94 ~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~ 172 (273)
T 2pnn_A 94 YTDSYYKGQTALHIAIERRNMTLVTLLVENGAD-VQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSW 172 (273)
T ss_dssp CCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSS
T ss_pred cccccCCCCCHHHHHHHcCCHHHHHHHHHCCCC-cCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccc
Confidence 334678999999999999999999999999999 898887 79999999999999999999999
Q ss_pred cCCCCCCCCccccCCCCCcHHHHHHHcCC---------HHHHHHHHHhcCcCcc-------cccCCCCcHHHHHHhCCCC
Q 004365 140 LCASVDDGYTYSRRNDGETILHCAISGDY---------FDLAFQIIHLYEKLVN-------SVNEKGVSPLHVLATKPNA 203 (759)
Q Consensus 140 ~ga~~~~~~~~~~d~~g~TpLh~A~~~g~---------~~iv~~Ll~~~~~~~~-------~~d~~G~TpLh~Aa~~~~~ 203 (759)
+|++++ .+|.+|+||||+|+..|+ .+++++|++. |++++ .+|..|.||||+|+..|+
T Consensus 173 ~gad~~-----~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~-ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~- 245 (273)
T 2pnn_A 173 QPADIS-----ARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILIL-GAKLHPTLKLEEITNRKGLTPLALAASSGK- 245 (273)
T ss_dssp CCCCTT-----CCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHH-HHHHCTTCCGGGCCCTTSCCHHHHHHHTTC-
T ss_pred CCCCce-----eeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHh-hhhcccccccccccCCCCCCHHHHHHHhCh-
Confidence 999999 899999999999999998 8999999995 66686 589999999999999995
Q ss_pred CccCchHHHHHHHHhcCc-Cccchh
Q 004365 204 FRSGSHLGRCIGTIYHCI-FVDKLQ 227 (759)
Q Consensus 204 ~~~~~~~~~~~~Ll~~ga-~~~~~~ 227 (759)
.+++++|+++|+ |+....
T Consensus 246 ------~~iv~~Ll~~ga~dp~~~~ 264 (273)
T 2pnn_A 246 ------IGVLAYILQREIHEPECRH 264 (273)
T ss_dssp ------HHHHHHHHHHHTC------
T ss_pred ------HHHHHHHHHCCCCCchhhh
Confidence 999999999999 665444
No 53
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.98 E-value=1.9e-32 Score=279.76 Aligned_cols=199 Identities=19% Similarity=0.175 Sum_probs=176.0
Q ss_pred cHHHHHHHHcCCHHHHHHHHh----hCcCccccccC----CCCChHHHHHH---HcCCHHHHHHHHHHhhhhcc-----c
Q 004365 11 KKDLFKRAMKGEWKEVVKNYE----KDERIHKVKIT----RSGGTALHIAV---SDGQEEIVEDLVRIIKEKQQ-----L 74 (759)
Q Consensus 11 ~~~L~~aa~~g~~~~v~~lL~----~~~~~~~~~~d----~~g~TpLh~Aa---~~g~~~iv~~Ll~~g~~~~~-----~ 74 (759)
.++||.|+..|+.+.++.++. . +.+++..+ .+|+||||+|+ +.|+.++|++|++.|++... .
T Consensus 6 ~~~L~~A~~~g~~~~v~~ll~~l~~~--~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~ 83 (260)
T 3jxi_A 6 RPILFDIVSRGSPDGLEGLLSFLLTH--KKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFIN 83 (260)
T ss_dssp HHHHHHHHHHTCGGGGTTHHHHHHHH--TCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhc
Confidence 578999999999998777666 4 55566444 77999999999 77999999999999976432 2
Q ss_pred ccCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCcccCCCC--------------CCCCcHHHHHHHCCCHHHHHHHHh-
Q 004365 75 EALTIGDERGSTPLHIAAGLGNVSMCKCIATADRKLIGERN--------------HENETPFFLAALHGHKDAFLCLHC- 139 (759)
Q Consensus 75 ~~~~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~g~~~~~~~d--------------~~G~TpLh~Aa~~g~~~iv~~Ll~- 139 (759)
.+++.+|..|+||||+||..|+.++|++|+++|++ ++.+| ..|+||||+|+..|+.++|++|++
T Consensus 84 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~ 162 (260)
T 3jxi_A 84 SPFRDVYYRGQTALHIAIERRCKHYVELLVEKGAD-VHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTEN 162 (260)
T ss_dssp CCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHC
T ss_pred ccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCC-cCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 44666777999999999999999999999999999 89988 689999999999999999999999
Q ss_pred --cCCCCCCCCccccCCCCCcHHHHHHHcCC---------HHHHHHHHHhcCcCc-------ccccCCCCcHHHHHHhCC
Q 004365 140 --LCASVDDGYTYSRRNDGETILHCAISGDY---------FDLAFQIIHLYEKLV-------NSVNEKGVSPLHVLATKP 201 (759)
Q Consensus 140 --~ga~~~~~~~~~~d~~g~TpLh~A~~~g~---------~~iv~~Ll~~~~~~~-------~~~d~~G~TpLh~Aa~~~ 201 (759)
+|++++ .+|..|+||||+|+..++ .+++++|+++ |+++ +.+|..|.||||+|+..|
T Consensus 163 ~~~ga~~~-----~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~-ga~~~~~~~~~~~~d~~g~tpL~~A~~~g 236 (260)
T 3jxi_A 163 GHKQADLR-----RQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIK-CAKLFPDTNLEALLNNDGLSPLMMAAKTG 236 (260)
T ss_dssp SSCCCCTT-----CCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHH-HHHHCTTCCGGGCCCTTSCCHHHHHHHTT
T ss_pred cccCCCCc-----ccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHh-CcccccccchhhcccCCCCCHHHHHHHcC
Confidence 999999 899999999999999888 7999999995 6667 779999999999999999
Q ss_pred CCCccCchHHHHHHHHhcCcCccc
Q 004365 202 NAFRSGSHLGRCIGTIYHCIFVDK 225 (759)
Q Consensus 202 ~~~~~~~~~~~~~~Ll~~ga~~~~ 225 (759)
+ .+++++|+++|.+...
T Consensus 237 ~-------~~~v~~Ll~~g~~~~~ 253 (260)
T 3jxi_A 237 K-------IGIFQHIIRREIADAA 253 (260)
T ss_dssp C-------HHHHHHHHHHHHHHHC
T ss_pred C-------HHHHHHHHHhCCCccc
Confidence 5 9999999999986644
No 54
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.97 E-value=9.7e-32 Score=274.48 Aligned_cols=150 Identities=19% Similarity=0.118 Sum_probs=131.1
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHH----HhhhhcccccCccCC----CCCChHHHHHH---HcCCHHHHHHHHHcCCc-
Q 004365 42 TRSGGTALHIAVSDGQEEIVEDLVR----IIKEKQQLEALTIGD----ERGSTPLHIAA---GLGNVSMCKCIATADRK- 109 (759)
Q Consensus 42 d~~g~TpLh~Aa~~g~~~iv~~Ll~----~g~~~~~~~~~~~~d----~~G~TpLh~Aa---~~g~~eiv~~Ll~~g~~- 109 (759)
+..|+||||.||+.|+.+.|+.|++ .| .+++..+ ..|+||||+|+ ..|+.+++++|+++|++
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~------~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~ 75 (260)
T 3jxi_A 2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHK------KRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKT 75 (260)
T ss_dssp CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHT------CCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHT
T ss_pred ccchHHHHHHHHHhCCHHHHHHHHHHHHhcC------CCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccc
Confidence 5679999999999999996555555 65 5566554 78999999999 77999999999998753
Q ss_pred ---------ccCCCCCCCCcHHHHHHHCCCHHHHHHHHhcCCCCCCCCccccC--------------CCCCcHHHHHHHc
Q 004365 110 ---------LIGERNHENETPFFLAALHGHKDAFLCLHCLCASVDDGYTYSRR--------------NDGETILHCAISG 166 (759)
Q Consensus 110 ---------~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~d--------------~~g~TpLh~A~~~ 166 (759)
.++.+|..|+||||+||..|+.++|++|+++|++++ .++ ..|.||||+|+..
T Consensus 76 ~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-----~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~ 150 (260)
T 3jxi_A 76 GNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVH-----AQARGRFFQPKDEGGYFYFGELPLSLAACT 150 (260)
T ss_dssp TCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTT-----CCCEECCCSSSCCCCSCCSCSSHHHHHHHT
T ss_pred cchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcC-----ccccccccCcccccccccCCCCHHHHHHHc
Confidence 145566799999999999999999999999999999 666 6899999999999
Q ss_pred CCHHHHHHHHHh--cCcCcccccCCCCcHHHHHHhCCC
Q 004365 167 DYFDLAFQIIHL--YEKLVNSVNEKGVSPLHVLATKPN 202 (759)
Q Consensus 167 g~~~iv~~Ll~~--~~~~~~~~d~~G~TpLh~Aa~~~~ 202 (759)
|+.+++++|++. .+++++.+|..|+||||+|+..++
T Consensus 151 g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~ 188 (260)
T 3jxi_A 151 NQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIAD 188 (260)
T ss_dssp TCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCC
T ss_pred CCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhcc
Confidence 999999999994 478899999999999999998764
No 55
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.97 E-value=4.7e-31 Score=256.07 Aligned_cols=164 Identities=17% Similarity=0.145 Sum_probs=156.6
Q ss_pred cccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhcccccCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCcccCCCCC
Q 004365 37 HKVKITRSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCIATADRKLIGERNH 116 (759)
Q Consensus 37 ~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~g~~~~~~~d~ 116 (759)
..+.+|..|+||||+||..|+.+++++|+++| ++++.+|..|+||||+|+..|+.+++++|+++|++ ++.+|.
T Consensus 27 ~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~ 99 (192)
T 2rfm_A 27 LRNYRDSYNRTPLMVACMLGMENAIDKLVENF------DKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSN-VNTKDF 99 (192)
T ss_dssp HHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHH------CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCT
T ss_pred HHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhc------cccccccccCccHHHHHHHcCCHHHHHHHHHCCCC-CCCCCC
Confidence 46678999999999999999999999999997 77899999999999999999999999999999998 999999
Q ss_pred CCCcHHHHHHHCCCHHHHHHHHhcCCCCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccccCCCCcHHHH
Q 004365 117 ENETPFFLAALHGHKDAFLCLHCLCASVDDGYTYSRRNDGETILHCAISGDYFDLAFQIIHLYEKLVNSVNEKGVSPLHV 196 (759)
Q Consensus 117 ~G~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~ 196 (759)
.|+||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|++. +++++.+|..|.||||+
T Consensus 100 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-----~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~ 173 (192)
T 2rfm_A 100 SGKTPLMWSIIFGYSEMSYFLLEHGANVN-----DRNLEGETPLIVASKYGRSEIVKKLLEL-GADISARDLTGLTAEAS 173 (192)
T ss_dssp TSCCHHHHHHHHTCHHHHHHHHHTTCCSS-----CCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCTTCBCTTSCBHHHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHCCCCCC-----CCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHH
Confidence 99999999999999999999999999999 8999999999999999999999999995 78899999999999999
Q ss_pred HHhCCCCCccCchHHHHHHHHhcC
Q 004365 197 LATKPNAFRSGSHLGRCIGTIYHC 220 (759)
Q Consensus 197 Aa~~~~~~~~~~~~~~~~~Ll~~g 220 (759)
|+..|+ .+++++|+++|
T Consensus 174 A~~~~~-------~~~v~~Ll~~~ 190 (192)
T 2rfm_A 174 ARIFGR-------QEVIKIFTEVR 190 (192)
T ss_dssp HHHTTC-------HHHHHHHHHHH
T ss_pred HHHhCc-------HHHHHHHHhcc
Confidence 999995 99999998865
No 56
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.97 E-value=1.1e-31 Score=276.32 Aligned_cols=191 Identities=17% Similarity=0.153 Sum_probs=176.4
Q ss_pred HHHHHHHHcCCHHHHHHHHhhCcCccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhcccccCccCCCCCChHHHHH
Q 004365 12 KDLFKRAMKGEWKEVVKNYEKDERIHKVKITRSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIA 91 (759)
Q Consensus 12 ~~L~~aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~d~~G~TpLh~A 91 (759)
++++.|+..|+.+.++.++....+..+|..|.+|+||||+||..|+.++|++|++.|+ .+++.+|..|+||||+|
T Consensus 78 ~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~-----~~~~~~~~~g~tpL~~a 152 (276)
T 4hbd_A 78 SDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGV-----CKVDKQNRAGYSPIMLT 152 (276)
T ss_dssp TTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSC-----CCTTCCCTTSCCHHHHG
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCC-----CcCCCCCCCCCCHHHHH
Confidence 4567788889999998888874445588999999999999999999999999999872 38999999999999999
Q ss_pred H-----HcCCHHHHHHHHHcCCcccCCCCCCCCcHHHHHHHCCCHHHHHHHHhcCCCCCCCCccccCCCCCcHHHHHHHc
Q 004365 92 A-----GLGNVSMCKCIATADRKLIGERNHENETPFFLAALHGHKDAFLCLHCLCASVDDGYTYSRRNDGETILHCAISG 166 (759)
Q Consensus 92 a-----~~g~~eiv~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~d~~g~TpLh~A~~~ 166 (759)
+ ..|+.+++++|++.|.. .+.+|..|+||||+|+..|+.++|++|+++|++++ .+|.+|+||||+|+..
T Consensus 153 ~~~~~~~~~~~~~v~~Ll~~g~~-~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n-----~~d~~G~TpLh~A~~~ 226 (276)
T 4hbd_A 153 ALATLKTQDDIETVLQLFRLGNI-NAKASQAGQTALMLAVSHGRVDVVKALLACEADVN-----VQDDDGSTALMCACEH 226 (276)
T ss_dssp GGCCCCSHHHHHHHHHHHHHSCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-----CCCTTSCCHHHHHHHH
T ss_pred HHHHhhhhhhHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC-----CCCCCCCCHHHHHHHC
Confidence 9 67899999999999987 88999999999999999999999999999999999 8999999999999999
Q ss_pred CCHHHHHHHHHhcCcCcccccCCCCcHHHHHHhCCCCCccCchHHHHHHHHhcC
Q 004365 167 DYFDLAFQIIHLYEKLVNSVNEKGVSPLHVLATKPNAFRSGSHLGRCIGTIYHC 220 (759)
Q Consensus 167 g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~~~~~~~~~~~~~~~~Ll~~g 220 (759)
|+.+++++|++..+++++.+|..|.||||+|+..|+ .+++++|++++
T Consensus 227 g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~-------~~iv~~Ll~~~ 273 (276)
T 4hbd_A 227 GHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQ-------SEIASMLYSRM 273 (276)
T ss_dssp TCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTC-------HHHHHHHHHHC
T ss_pred CCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCC-------HHHHHHHHhcc
Confidence 999999999996689999999999999999999995 99999999875
No 57
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.97 E-value=1.2e-30 Score=245.60 Aligned_cols=159 Identities=17% Similarity=0.103 Sum_probs=133.3
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHHhhhhcccccCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCcccCCCCCCCCcHHH
Q 004365 44 SGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCIATADRKLIGERNHENETPFF 123 (759)
Q Consensus 44 ~g~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~g~~~~~~~d~~G~TpLh 123 (759)
...||||.|+..|+.+++++|+++| .+++.+|..|+||||+|+. |+.+++++|+++|++ ++.+|..|+||||
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~Ll~~~------~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~ 75 (162)
T 1ihb_A 4 PWGNELASAAARGDLEQLTSLLQNN------VNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGAN-PDLKDRTGFAVIH 75 (162)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHTTSC------CCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCC-TTCCCTTSCCHHH
T ss_pred hHhhHHHHHHHcCCHHHHHHHHhCC------CCccccCccCccHHHHHHc-CcHHHHHHHHHcCCC-CCCCCCCCCCHHH
Confidence 4568888888888888888888875 6778888888888888888 888888888888887 8888888888888
Q ss_pred HHHHCCCHHHHHHHHhcCCCCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccccCCCCcHHHHHHhCCCC
Q 004365 124 LAALHGHKDAFLCLHCLCASVDDGYTYSRRNDGETILHCAISGDYFDLAFQIIHLYEKLVNSVNEKGVSPLHVLATKPNA 203 (759)
Q Consensus 124 ~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~~~~ 203 (759)
+|+..|+.+++++|+++|++++ .+|.+|+||||+|+..|+.+++++|++++...++.+|..|.||||+|+..|+
T Consensus 76 ~A~~~~~~~~v~~Ll~~g~~~~-----~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~- 149 (162)
T 1ihb_A 76 DAARAGFLDTLQTLLEFQADVN-----IEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGR- 149 (162)
T ss_dssp HHHHHTCHHHHHHHHHTTCCTT-----CCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTC-
T ss_pred HHHHcCCHHHHHHHHHcCCCCC-----CcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCC-
Confidence 8888888888888888888888 7888888888888888888888888886554468888888888888888884
Q ss_pred CccCchHHHHHHHHhcCcC
Q 004365 204 FRSGSHLGRCIGTIYHCIF 222 (759)
Q Consensus 204 ~~~~~~~~~~~~Ll~~ga~ 222 (759)
.+++++|+++|+|
T Consensus 150 ------~~~~~~Ll~~GAd 162 (162)
T 1ihb_A 150 ------NEVVSLMQANGAG 162 (162)
T ss_dssp ------HHHHHHHHHTC--
T ss_pred ------HHHHHHHHHhCCC
Confidence 8888888888875
No 58
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.97 E-value=9.3e-33 Score=294.22 Aligned_cols=179 Identities=12% Similarity=0.046 Sum_probs=143.9
Q ss_pred HHHHHH-cCCHHHHHHHHhhCcCccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhcccccCccCCCCCChHHHHHH
Q 004365 14 LFKRAM-KGEWKEVVKNYEKDERIHKVKITRSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAA 92 (759)
Q Consensus 14 L~~aa~-~g~~~~v~~lL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~d~~G~TpLh~Aa 92 (759)
++.++. .++.+.+..++.. +.+++||||+||+.|+.++|++|+++|+. ....+..|..|+||||+||
T Consensus 69 ~~~a~~~~~~~~~~~~l~~~---------g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~---~~~~~~~~~~~~tpL~~Aa 136 (376)
T 2aja_A 69 LYYAHYNRNAKQLWSDAHKK---------GIKSEVICFVAAITGCSSALDTLCLLLTS---DEIVKVIQAENYQAFRLAA 136 (376)
T ss_dssp HHHHHTTTTCTTHHHHHHHH---------TCCHHHHHHHHHHHCCHHHHHHHTTC--C---CSSCC--CHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHc---------CCCcCCHHHHHHHcCCHHHHHHHHHcCCc---HHHHHHhccCCCCHHHHHH
Confidence 444444 3444555454444 34567999999999999999999998741 1123345667899999999
Q ss_pred HcCCHHHHHHHHHcCCc----ccCCCCCCCCcHHHHHHHCCCHHHHHHHHhcCCCCCCCCccc--cCCCCCcHHHHHH-H
Q 004365 93 GLGNVSMCKCIATADRK----LIGERNHENETPFFLAALHGHKDAFLCLHCLCASVDDGYTYS--RRNDGETILHCAI-S 165 (759)
Q Consensus 93 ~~g~~eiv~~Ll~~g~~----~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~--~d~~g~TpLh~A~-~ 165 (759)
..|+.++|++|+++|++ .++.++ .||||+||.+|+.++|++|+++|++++ . +|..|.||||+|+ .
T Consensus 137 ~~G~~eiv~~Ll~~gad~~~~~i~~~~---~TpLh~Aa~~G~~eiv~~Ll~~ga~~~-----~~~~d~~g~TpL~~Aa~~ 208 (376)
T 2aja_A 137 ENGHLHVLNRLCELAPTEIMAMIQAEN---YHAFRLAAENGHLHVLNRLCELAPTEA-----TAMIQAENYYAFRWAAVG 208 (376)
T ss_dssp HTTCHHHHHHHHHSCTTTHHHHHSHHH---HHHHHHHHHTTCHHHHHHHHHSCGGGH-----HHHHHHHHHHHHHHHHST
T ss_pred HcCCHHHHHHHHhCCCCccccccCCCC---CCHHHHHHHCCCHHHHHHHHHcCCccc-----hhccCCCCCCHHHHHHHH
Confidence 99999999999999974 244444 999999999999999999999999876 6 7888999999999 9
Q ss_pred cCCHHHHHHHHHhcCcCcccccCCCCcHHHHHHhCCCCCccCchHHHHHHHHhcCcCccchh
Q 004365 166 GDYFDLAFQIIHLYEKLVNSVNEKGVSPLHVLATKPNAFRSGSHLGRCIGTIYHCIFVDKLQ 227 (759)
Q Consensus 166 ~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~ 227 (759)
+|+.+++++|++. |+ .|.||||+|+..|+ .+++++|+++|++++..+
T Consensus 209 ~G~~eiv~~Ll~~-ga-------~~~taL~~Aa~~g~-------~evv~lL~~~ga~~~~~~ 255 (376)
T 2aja_A 209 RGHHNVINFLLDC-PV-------MLAYAEIHEFEYGE-------KYVNPFIARHVNRLKEMH 255 (376)
T ss_dssp TCCHHHHHHHTTS-HH-------HHHHHHHCTTTTTT-------TTHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhC-CC-------ccchHHHHHHHCCC-------HHHHHHHHhcCccccccc
Confidence 9999999999994 43 28999999999995 889999999999887654
No 59
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.97 E-value=3e-30 Score=244.30 Aligned_cols=161 Identities=16% Similarity=0.128 Sum_probs=148.0
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHHhhhhcccccCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCcccCCCCCCCCcHHH
Q 004365 44 SGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCIATADRKLIGERNHENETPFF 123 (759)
Q Consensus 44 ~g~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~g~~~~~~~d~~G~TpLh 123 (759)
.|.||||.||..|+.++++.|++.| .+++.+|..|+||||+|+..|+.+++++|+++|++ ++.+|..|.||||
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~ 74 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQE------NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD-PQLLGKGRESALS 74 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHS------SCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHH
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcC------CCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCCcCCCCCcHHH
Confidence 5889999999999999999999986 67899999999999999999999999999999988 8999999999999
Q ss_pred HHHHCCCHHHHHHHHhcCCCCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccccCCCCcHHHHHHhCCCC
Q 004365 124 LAALHGHKDAFLCLHCLCASVDDGYTYSRRNDGETILHCAISGDYFDLAFQIIHLYEKLVNSVNEKGVSPLHVLATKPNA 203 (759)
Q Consensus 124 ~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~~~~ 203 (759)
+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|++ .+++++.+|..|.||||+|+..|+
T Consensus 75 ~A~~~~~~~~v~~Ll~~g~~~~-----~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~- 147 (167)
T 3v31_A 75 LACSKGYTDIVKMLLDCGVDVN-----EYDWNGGTPLLYAVHGNHVKCVKMLLE-SGADPTIETDSGYNSMDLAVALGY- 147 (167)
T ss_dssp HHHHHTCHHHHHHHHHHTCCTT-----CCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTC-
T ss_pred HHHHcCCHHHHHHHHHCCCCCC-----cCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCc-
Confidence 9999999999999999999998 889999999999999999999999999 578899999999999999999985
Q ss_pred CccCchHHHHHHHHhcCcCcc
Q 004365 204 FRSGSHLGRCIGTIYHCIFVD 224 (759)
Q Consensus 204 ~~~~~~~~~~~~Ll~~ga~~~ 224 (759)
.+++++|++++++..
T Consensus 148 ------~~~~~~L~~~~~~~~ 162 (167)
T 3v31_A 148 ------RSVQQVIESHLLKLL 162 (167)
T ss_dssp ------HHHHHHHHHHHHHHC
T ss_pred ------HHHHHHHHHHHHHHH
Confidence 899999998876543
No 60
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.97 E-value=3.5e-30 Score=245.16 Aligned_cols=169 Identities=19% Similarity=0.140 Sum_probs=152.4
Q ss_pred cHHHHHHHHcCCHHHHHHHHhhCcCccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhcccccCccCCCCCChHHHH
Q 004365 11 KKDLFKRAMKGEWKEVVKNYEKDERIHKVKITRSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHI 90 (759)
Q Consensus 11 ~~~L~~aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~d~~G~TpLh~ 90 (759)
.++||.|+..|+.+.++.++... ...++..|..|+||||+||..|+.++|++|+++| ++++.+|..|+||||+
T Consensus 3 ~~~L~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g------~~~~~~~~~g~t~L~~ 75 (172)
T 3v30_A 3 SLSIHQLAAQGELDQLKEHLRKG-DNLVNKPDERGFTPLIWASAFGEIETVRFLLEWG------ADPHILAKERESALSL 75 (172)
T ss_dssp -CCHHHHHHTTCHHHHHHHHTTC-SGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHT------CCTTCCCTTCCCHHHH
T ss_pred hhhHHHHHHcCCHHHHHHHHHcC-cccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcC------CCchhhcccCCCHHHH
Confidence 46899999999999999999883 3447888999999999999999999999999997 7899999999999999
Q ss_pred HHHcCCHHHHHHHHHcCCcccCCCCCCCCcHHHHHHHCCCHHHHHHHHhcCCCCCCCCccccCCCCCcHHHHHHHcCCHH
Q 004365 91 AAGLGNVSMCKCIATADRKLIGERNHENETPFFLAALHGHKDAFLCLHCLCASVDDGYTYSRRNDGETILHCAISGDYFD 170 (759)
Q Consensus 91 Aa~~g~~eiv~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~d~~g~TpLh~A~~~g~~~ 170 (759)
|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+
T Consensus 76 A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-----~~~~~g~t~l~~A~~~~~~~ 149 (172)
T 3v30_A 76 ASTGGYTDIVGLLLERDVD-INIYDWNGGTPLLYAVRGNHVKCVEALLARGADLT-----TEADSGYTPMDLAVALGYRK 149 (172)
T ss_dssp HHHTTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-----CCCTTSCCHHHHHHHHTCHH
T ss_pred HHHCCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-----ccCCCCCCHHHHHHHhCcHH
Confidence 9999999999999999999 99999999999999999999999999999999999 89999999999999999999
Q ss_pred HHHHHHHhcCcCcccccCCCCcH
Q 004365 171 LAFQIIHLYEKLVNSVNEKGVSP 193 (759)
Q Consensus 171 iv~~Ll~~~~~~~~~~d~~G~Tp 193 (759)
++++|+++ +.++...+..|.||
T Consensus 150 ~~~~L~~~-~~~~~~~~~~~~~p 171 (172)
T 3v30_A 150 VQQVIENH-ILKLFQSNLVPADP 171 (172)
T ss_dssp HHHHHHHH-HHHHSCC-------
T ss_pred HHHHHHHH-HHHHhcccCCCCCC
Confidence 99999995 56688888888887
No 61
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.97 E-value=9.4e-30 Score=241.37 Aligned_cols=160 Identities=23% Similarity=0.215 Sum_probs=143.0
Q ss_pred cCCCCChHHHHHHHcCCHHHHHHHHHHhhhhcccccCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCcccCCCCCCCCc
Q 004365 41 ITRSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCIATADRKLIGERNHENET 120 (759)
Q Consensus 41 ~d~~g~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~g~~~~~~~d~~G~T 120 (759)
....+.||||.||+.|+.++|++|+++| .+++.+|..|+||||+||..|+.+++++|+++|++ ++.+|..|+|
T Consensus 10 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~g------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t 82 (169)
T 2y1l_E 10 HGSDLGKKLLEAARAGRDDEVRILMANG------ADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD-VNAVDHAGMT 82 (169)
T ss_dssp ---CHHHHHHHHHHHTCHHHHHHHHHTT------CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCC
T ss_pred CCCcccchHHHHHHcCCHHHHHHHHHCC------CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCC
Confidence 3566789999999999999999999986 77888999999999999999999999999999988 8999999999
Q ss_pred HHHHHHHCCCHHHHHHHHhcCCCCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccccCCCCcHHHHHHhC
Q 004365 121 PFFLAALHGHKDAFLCLHCLCASVDDGYTYSRRNDGETILHCAISGDYFDLAFQIIHLYEKLVNSVNEKGVSPLHVLATK 200 (759)
Q Consensus 121 pLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~ 200 (759)
|||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++ +++++.+|..|.||||+|+..
T Consensus 83 ~L~~A~~~~~~~~~~~Ll~~g~~~~-----~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~ 156 (169)
T 2y1l_E 83 PLRLAALFGHLEIVEVLLKNGADVN-----ANDMEGHTPLHLAAMFGHLEIVEVLLKN-GADVNAQDKFGKTAFDISIDN 156 (169)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTT-----CCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCC-----CCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHh
Confidence 9999999999999999999999988 8899999999999999999999999985 778999999999999999999
Q ss_pred CCCCccCchHHHHHHHHhcC
Q 004365 201 PNAFRSGSHLGRCIGTIYHC 220 (759)
Q Consensus 201 ~~~~~~~~~~~~~~~Ll~~g 220 (759)
++ .+++++|++.|
T Consensus 157 ~~-------~~~~~~L~~~G 169 (169)
T 2y1l_E 157 GN-------EDLAEILQKLN 169 (169)
T ss_dssp TC-------HHHHHHHHTC-
T ss_pred CC-------HHHHHHHHHcC
Confidence 85 89999998765
No 62
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.97 E-value=3.8e-30 Score=244.88 Aligned_cols=165 Identities=16% Similarity=0.140 Sum_probs=153.2
Q ss_pred CChHHHHHHHcCCHHHHHHHHHHhhhhcccccCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCcccCCCCCCCCcHHHH
Q 004365 45 GGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCIATADRKLIGERNHENETPFFL 124 (759)
Q Consensus 45 g~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~g~~~~~~~d~~G~TpLh~ 124 (759)
+.||||.||..|+.++++.|++.| ..+++.+|..|+||||+||..|+.+++++|+++|++ ++.+|..|+||||+
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~-----~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~ 75 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKG-----DNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD-PHILAKERESALSL 75 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTC-----SGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTCCCHHHH
T ss_pred chhhHHHHHHcCCHHHHHHHHHcC-----cccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-chhhcccCCCHHHH
Confidence 579999999999999999999986 245889999999999999999999999999999999 99999999999999
Q ss_pred HHHCCCHHHHHHHHhcCCCCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccccCCCCcHHHHHHhCCCCC
Q 004365 125 AALHGHKDAFLCLHCLCASVDDGYTYSRRNDGETILHCAISGDYFDLAFQIIHLYEKLVNSVNEKGVSPLHVLATKPNAF 204 (759)
Q Consensus 125 Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~~~~~ 204 (759)
|+..|+.+++++|+++|++++ .+|..|+||||+|+..|+.+++++|+++ +++++.+|..|.||||+|+..++
T Consensus 76 A~~~~~~~~v~~Ll~~g~~~~-----~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~~~-- 147 (172)
T 3v30_A 76 ASTGGYTDIVGLLLERDVDIN-----IYDWNGGTPLLYAVRGNHVKCVEALLAR-GADLTTEADSGYTPMDLAVALGY-- 147 (172)
T ss_dssp HHHTTCHHHHHHHHTTTCCTT-----CCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTC--
T ss_pred HHHCCCHHHHHHHHHcCCCCC-----CCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCccccCCCCCCHHHHHHHhCc--
Confidence 999999999999999999999 8999999999999999999999999995 78899999999999999999995
Q ss_pred ccCchHHHHHHHHhcCcCccchhh
Q 004365 205 RSGSHLGRCIGTIYHCIFVDKLQE 228 (759)
Q Consensus 205 ~~~~~~~~~~~Ll~~ga~~~~~~~ 228 (759)
.+++++|+++|+++...+.
T Consensus 148 -----~~~~~~L~~~~~~~~~~~~ 166 (172)
T 3v30_A 148 -----RKVQQVIENHILKLFQSNL 166 (172)
T ss_dssp -----HHHHHHHHHHHHHHSCC--
T ss_pred -----HHHHHHHHHHHHHHhcccC
Confidence 9999999999998776553
No 63
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.97 E-value=2.1e-30 Score=266.53 Aligned_cols=164 Identities=16% Similarity=0.149 Sum_probs=146.3
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHHHhhhhcccccCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCcccCCCCCCCCcHH
Q 004365 43 RSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCIATADRKLIGERNHENETPF 122 (759)
Q Consensus 43 ~~g~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~g~~~~~~~d~~G~TpL 122 (759)
..+++++|.|+..|+.+.++.+++.+. ...+|.+|.+|+||||+||..|+.+++++|+++|+..++.+|..|.|||
T Consensus 74 ~~~~~~l~~a~~~~~~~~~~~l~~~~~----~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL 149 (276)
T 4hbd_A 74 LACRSDAHPELVRRHLVTFRAMSARLL----DYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPI 149 (276)
T ss_dssp HHHSTTCCHHHHHHHHHHHHHHCHHHH----HHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHH
T ss_pred HHhccCCCHHHHHHHHHHHHHHHHHHH----hhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHH
Confidence 346789999999999999999999874 2458999999999999999999999999999999955999999999999
Q ss_pred HHHH-----HCCCHHHHHHHHhcCCCCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccccCCCCcHHHHH
Q 004365 123 FLAA-----LHGHKDAFLCLHCLCASVDDGYTYSRRNDGETILHCAISGDYFDLAFQIIHLYEKLVNSVNEKGVSPLHVL 197 (759)
Q Consensus 123 h~Aa-----~~g~~~iv~~Ll~~ga~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A 197 (759)
|+|+ ..++.+++++|++.|++++ ..|..|+||||+|+..|+.+++++|++. |++++.+|.+|.||||+|
T Consensus 150 ~~a~~~~~~~~~~~~~v~~Ll~~g~~~~-----~~~~~g~tpLh~A~~~g~~~~v~~Ll~~-gad~n~~d~~G~TpLh~A 223 (276)
T 4hbd_A 150 MLTALATLKTQDDIETVLQLFRLGNINA-----KASQAGQTALMLAVSHGRVDVVKALLAC-EADVNVQDDDGSTALMCA 223 (276)
T ss_dssp HHGGGCCCCSHHHHHHHHHHHHHSCTTC-----CCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHH
T ss_pred HHHHHHHhhhhhhHHHHHHHHHcCCCcc-----ccCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCCCCCCCCCCCHHHHH
Confidence 9999 6688999999999999888 7899999999999999999999999995 888999999999999999
Q ss_pred HhCCCCCccCchHHHHHHHHh-cCcCc
Q 004365 198 ATKPNAFRSGSHLGRCIGTIY-HCIFV 223 (759)
Q Consensus 198 a~~~~~~~~~~~~~~~~~Ll~-~ga~~ 223 (759)
+..|+ .+++++|++ .|+++
T Consensus 224 ~~~g~-------~~iv~~Ll~~~gad~ 243 (276)
T 4hbd_A 224 CEHGH-------KEIAGLLLAVPSCDI 243 (276)
T ss_dssp HHHTC-------HHHHHHHHTSTTCCT
T ss_pred HHCCC-------HHHHHHHHhcCCCCC
Confidence 99985 556665555 44443
No 64
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.96 E-value=1.1e-29 Score=243.31 Aligned_cols=168 Identities=20% Similarity=0.204 Sum_probs=152.9
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHHHhhhhcccccCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCcccCCCCCCCCcH
Q 004365 42 TRSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCIATADRKLIGERNHENETP 121 (759)
Q Consensus 42 d~~g~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~g~~~~~~~d~~G~Tp 121 (759)
+.++.||||.||..|+.++|++|++.+ ..+++.+|..|+||||+||..|+.+++++|+++|++ ++.+|..|+||
T Consensus 2 ~~~~~~~l~~A~~~g~~~~v~~ll~~~-----~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~ 75 (179)
T 3f6q_A 2 SPEFMDDIFTQCREGNAVAVRLWLDNT-----ENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR-INVMNRGDDTP 75 (179)
T ss_dssp -----CCHHHHHHHTCHHHHHHHHHCT-----TSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCH
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHhcC-----cccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-CCCcCCCCCCH
Confidence 356889999999999999999999974 477899999999999999999999999999999998 99999999999
Q ss_pred HHHHHHCCCHHHHHHHHhcCCCCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccccCCCCcHHHHHHhCC
Q 004365 122 FFLAALHGHKDAFLCLHCLCASVDDGYTYSRRNDGETILHCAISGDYFDLAFQIIHLYEKLVNSVNEKGVSPLHVLATKP 201 (759)
Q Consensus 122 Lh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~~ 201 (759)
||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++ +++++.+|..|.||||+|+..+
T Consensus 76 L~~A~~~~~~~~v~~Ll~~g~~~~-----~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~tpl~~A~~~~ 149 (179)
T 3f6q_A 76 LHLAASHGHRDIVQKLLQYKADIN-----AVNEHGNVPLHYACFWGQDQVAEDLVAN-GALVSICNKYGEMPVDKAKAPL 149 (179)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTT-----CCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCSSBCCTTSCCGGGGSCHHH
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCC-----ccCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCcchhccCCCCcHHHHHHHH
Confidence 999999999999999999999998 8999999999999999999999999995 7889999999999999999887
Q ss_pred CCCccCchHHHHHHHHhcCcCccchhh
Q 004365 202 NAFRSGSHLGRCIGTIYHCIFVDKLQE 228 (759)
Q Consensus 202 ~~~~~~~~~~~~~~Ll~~ga~~~~~~~ 228 (759)
+.+++++|+++|++++....
T Consensus 150 -------~~~~~~~L~~~g~~~~~~~~ 169 (179)
T 3f6q_A 150 -------RELLRERAEKMGQNLNRIPY 169 (179)
T ss_dssp -------HHHHHHHHHHTTCCCSCBCC
T ss_pred -------HHHHHHHHHHhhcCcccCCc
Confidence 58999999999999987664
No 65
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.96 E-value=2.2e-32 Score=272.78 Aligned_cols=148 Identities=22% Similarity=0.205 Sum_probs=117.6
Q ss_pred ccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhcccccCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCcccCCCCCCCC
Q 004365 40 KITRSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCIATADRKLIGERNHENE 119 (759)
Q Consensus 40 ~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~g~~~~~~~d~~G~ 119 (759)
..+.+|.||||+||..|+.++|++|++.| ++++.+|..|+||||+||..|+.+++++|+++|++ ++.+|..|+
T Consensus 16 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g------~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~-~n~~d~~g~ 88 (229)
T 2vge_A 16 RARLNPLVLLLDAALTGELEVVQQAVKEM------NDPSQPNEEGITALHNAICGANYSIVDFLITAGAN-VNSPDSHGW 88 (229)
T ss_dssp CTTSCHHHHHHHHHHHTCHHHHHHHHHHS------SCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCC
T ss_pred ccccchhHHHHHHHHcCCHHHHHHHHhcC------CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCC
Confidence 33556677888888888888888888876 67777888888888888888888888888888887 888888888
Q ss_pred cHHHHHHHCCCHHHHHHHHhcCCCCCCCCccccC-CCCCcHHHHH--HHcCCHHHHHHHHHhcCcCcccccCCCCcHHHH
Q 004365 120 TPFFLAALHGHKDAFLCLHCLCASVDDGYTYSRR-NDGETILHCA--ISGDYFDLAFQIIHLYEKLVNSVNEKGVSPLHV 196 (759)
Q Consensus 120 TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~d-~~g~TpLh~A--~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~ 196 (759)
||||+|+..|+.+++++|+++|++++ .++ .+|+||||+| +..|+.+++++|++. |++++..|..|.||++.
T Consensus 89 tpLh~A~~~g~~~~v~~Ll~~ga~~~-----~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~-ga~~~~~~~~~~~~l~~ 162 (229)
T 2vge_A 89 TPLHCAASCNDTVICMALVQHGAAIF-----ATTLSDGATAFEKCDPYREGYADCATYLADV-EQSMGLMNSGAVYALWD 162 (229)
T ss_dssp CHHHHHHHTTCHHHHHHHHTTTCCTT-----CCCSSTTCCTGGGCCTTSTTHHHHHHHHHHH-HHHTTTSGGGEEEESSC
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCcc-----cccCCCCCCHHHHHHHHhcChHHHHHHHHHc-CCCcccccCCchHHHHH
Confidence 88888888888888888888888887 564 5788888888 888888888888885 56688888888888775
Q ss_pred HHhC
Q 004365 197 LATK 200 (759)
Q Consensus 197 Aa~~ 200 (759)
++..
T Consensus 163 ~~~~ 166 (229)
T 2vge_A 163 YSAE 166 (229)
T ss_dssp BCCS
T ss_pred Hhhc
Confidence 5443
No 66
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.96 E-value=1.2e-29 Score=239.54 Aligned_cols=161 Identities=20% Similarity=0.145 Sum_probs=141.2
Q ss_pred cCCCCChHHHHHHHcCCHHHHHHHHHHhhhhcccccCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCcccCCCCCCCCc
Q 004365 41 ITRSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCIATADRKLIGERNHENET 120 (759)
Q Consensus 41 ~d~~g~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~g~~~~~~~d~~G~T 120 (759)
.|.+|.||||.|++.|+.++++.|++.+ ..+++..|..|+||||+||..|+.+++++|+++|++ ++.+|..|+|
T Consensus 4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~-----~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t 77 (165)
T 3twr_A 4 GNSEADRQLLEAAKAGDVETVKKLCTVQ-----SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD-VHAKDKGGLV 77 (165)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHCCTT-----TTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCC
T ss_pred CcchhhHHHHHHHHhCCHHHHHHHHHcC-----CCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCC-CCccCCCCCC
Confidence 3677889999999999999999999864 367788888899999999999999999999999988 8999999999
Q ss_pred HHHHHHHCCCHHHHHHHHhcCCCCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccccCCCCcHHHHHHhC
Q 004365 121 PFFLAALHGHKDAFLCLHCLCASVDDGYTYSRRNDGETILHCAISGDYFDLAFQIIHLYEKLVNSVNEKGVSPLHVLATK 200 (759)
Q Consensus 121 pLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~ 200 (759)
|||+|+..|+.+++++|+++|++++ .+|..|+||||+|+..|+.+++++|++. +++++.+|.+|.||||+|+.
T Consensus 78 ~L~~A~~~~~~~~v~~Ll~~g~~~~-----~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~a~~- 150 (165)
T 3twr_A 78 PLHNACSYGHYEVAELLVKHGAVVN-----VADLWKFTPLHEAAAKGKYEICKLLLQH-GADPTKKNRDGNTPLDLVKD- 150 (165)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTT-----CCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCTGGGSCT-
T ss_pred HHHHHHHcCcHHHHHHHHhCCCCCC-----CcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCChhHhHhc-
Confidence 9999999999999999999999988 8899999999999999999999999984 77899999999999999776
Q ss_pred CCCCccCchHHHHHHHHhcCc
Q 004365 201 PNAFRSGSHLGRCIGTIYHCI 221 (759)
Q Consensus 201 ~~~~~~~~~~~~~~~Ll~~ga 221 (759)
++ .+++++|+++|+
T Consensus 151 ~~-------~~i~~~L~~~gA 164 (165)
T 3twr_A 151 GD-------TDIQDLLRGDAA 164 (165)
T ss_dssp TC-------HHHHHHHHTC--
T ss_pred CC-------hHHHHHHhhccc
Confidence 53 799999988875
No 67
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.96 E-value=4.8e-29 Score=232.25 Aligned_cols=151 Identities=23% Similarity=0.214 Sum_probs=124.3
Q ss_pred CChHHHHHHHcCCHHHHHHHHHHhhhhcccccCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCcccCCCCCCCCcHHHH
Q 004365 45 GGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCIATADRKLIGERNHENETPFFL 124 (759)
Q Consensus 45 g~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~g~~~~~~~d~~G~TpLh~ 124 (759)
+.||||.|++.|+.++|++|++.| .+++ .|..|+||||+|+..|+.+++++|+++|++ ++.+|..|+||||+
T Consensus 2 ~~~~L~~A~~~g~~~~v~~Ll~~g------~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~ 73 (153)
T 1awc_B 2 LGKKLLEAARAGQDDEVRILMANG------APFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS-RDARTKVDRTPLHM 73 (153)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHT------CCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTCCCHHHH
T ss_pred ccHHHHHHHHcCCHHHHHHHHHcC------CCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHH
Confidence 457888888888888888888886 3343 477888888888888888888888888887 78888888888888
Q ss_pred HHHCCCHHHHHHHHhcCCCCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccccCCCCcHHHHHHhCCCCC
Q 004365 125 AALHGHKDAFLCLHCLCASVDDGYTYSRRNDGETILHCAISGDYFDLAFQIIHLYEKLVNSVNEKGVSPLHVLATKPNAF 204 (759)
Q Consensus 125 Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~~~~~ 204 (759)
|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++ |++++.+|..|.||||+|+..|+
T Consensus 74 A~~~~~~~~v~~Ll~~g~~~~-----~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~~~-- 145 (153)
T 1awc_B 74 AASEGHANIVEVLLKHGADVN-----AKDMLKMTALHWATEHNHQEVVELLIKY-GADVHTQSKFCKTAFDISIDNGN-- 145 (153)
T ss_dssp HHHHTCHHHHHHHHTTTCCTT-----CCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTC--
T ss_pred HHHcChHHHHHHHHHcCCCCC-----CCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCccccCCCCCCHHHHHHHcCC--
Confidence 888888888888888888887 7888888888888888888888888884 67788888888888888888885
Q ss_pred ccCchHHHHHHH
Q 004365 205 RSGSHLGRCIGT 216 (759)
Q Consensus 205 ~~~~~~~~~~~L 216 (759)
.+++++|
T Consensus 146 -----~~i~~~L 152 (153)
T 1awc_B 146 -----EDLAEIL 152 (153)
T ss_dssp -----HHHHHHH
T ss_pred -----HHHHHHh
Confidence 7777665
No 68
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.96 E-value=3.8e-29 Score=235.37 Aligned_cols=157 Identities=20% Similarity=0.205 Sum_probs=147.7
Q ss_pred cccHHHHHHHHcCCHHHHHHHHhhCcCccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhcccccCccCCCCCChHH
Q 004365 9 QLKKDLFKRAMKGEWKEVVKNYEKDERIHKVKITRSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPL 88 (759)
Q Consensus 9 ~~~~~L~~aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~d~~G~TpL 88 (759)
...++|+.|+..|+.+.++.++.. +.+++..|..|+||||+|+. |+.+++++|+++| ++++.+|..|+|||
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~Ll~~--~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g------~~~~~~~~~g~t~L 74 (162)
T 1ihb_A 4 PWGNELASAAARGDLEQLTSLLQN--NVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRG------ANPDLKDRTGFAVI 74 (162)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHTTS--CCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTT------CCTTCCCTTSCCHH
T ss_pred hHhhHHHHHHHcCCHHHHHHHHhC--CCCccccCccCccHHHHHHc-CcHHHHHHHHHcC------CCCCCCCCCCCCHH
Confidence 357899999999999999999976 78889999999999999999 9999999999987 78999999999999
Q ss_pred HHHHHcCCHHHHHHHHHcCCcccCCCCCCCCcHHHHHHHCCCHHHHHHHHhcCCC-CCCCCccccCCCCCcHHHHHHHcC
Q 004365 89 HIAAGLGNVSMCKCIATADRKLIGERNHENETPFFLAALHGHKDAFLCLHCLCAS-VDDGYTYSRRNDGETILHCAISGD 167 (759)
Q Consensus 89 h~Aa~~g~~eiv~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~ga~-~~~~~~~~~d~~g~TpLh~A~~~g 167 (759)
|+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+++|++ ++ .+|..|.||||+|+..|
T Consensus 75 ~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-----~~~~~g~t~l~~A~~~~ 148 (162)
T 1ihb_A 75 HDAARAGFLDTLQTLLEFQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVG-----HRNHKGDTACDLARLYG 148 (162)
T ss_dssp HHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTT-----CCCTTSCCHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCC-----CcCCCCCcHHHHHHHcC
Confidence 999999999999999999998 999999999999999999999999999999998 46 89999999999999999
Q ss_pred CHHHHHHHHHhcCc
Q 004365 168 YFDLAFQIIHLYEK 181 (759)
Q Consensus 168 ~~~iv~~Ll~~~~~ 181 (759)
+.+++++|+++ |+
T Consensus 149 ~~~~~~~Ll~~-GA 161 (162)
T 1ihb_A 149 RNEVVSLMQAN-GA 161 (162)
T ss_dssp CHHHHHHHHHT-C-
T ss_pred CHHHHHHHHHh-CC
Confidence 99999999995 44
No 69
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.96 E-value=4.7e-31 Score=263.12 Aligned_cols=127 Identities=17% Similarity=0.120 Sum_probs=83.6
Q ss_pred HHHHHHHhhhhcccccCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCcccCCCCCCCCcHHHHHHHCCCHHHHHHHHhc
Q 004365 61 VEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCIATADRKLIGERNHENETPFFLAALHGHKDAFLCLHCL 140 (759)
Q Consensus 61 v~~Ll~~g~~~~~~~~~~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~ 140 (759)
|+.|+++|+++ ...+..+.+|.||||+||..|+.+++++|+++|++ ++.+|..|+||||+||..|+.++|++|+++
T Consensus 1 v~~ll~~~~~~---~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ 76 (229)
T 2vge_A 1 MRSVLRKAGSP---RKARRARLNPLVLLLDAALTGELEVVQQAVKEMND-PSQPNEEGITALHNAICGANYSIVDFLITA 76 (229)
T ss_dssp ---------CC---CCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred CeehhccCCCC---ccccccccchhHHHHHHHHcCCHHHHHHHHhcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence 45667766322 22334456677778888888888888888888877 788888888888888888888888888888
Q ss_pred CCCCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCccccc-CCCCcHHHHH
Q 004365 141 CASVDDGYTYSRRNDGETILHCAISGDYFDLAFQIIHLYEKLVNSVN-EKGVSPLHVL 197 (759)
Q Consensus 141 ga~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d-~~G~TpLh~A 197 (759)
|++++ .+|..|+||||+|+..|+.+++++|++. +++++..+ .+|.||||+|
T Consensus 77 ga~~n-----~~d~~g~tpLh~A~~~g~~~~v~~Ll~~-ga~~~~~~~~~g~tpL~~A 128 (229)
T 2vge_A 77 GANVN-----SPDSHGWTPLHCAASCNDTVICMALVQH-GAAIFATTLSDGATAFEKC 128 (229)
T ss_dssp TCCTT-----CCCTTCCCHHHHHHHTTCHHHHHHHHTT-TCCTTCCCSSTTCCTGGGC
T ss_pred CCCCC-----CCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCcccccCCCCCCHHHHH
Confidence 88777 7777888888888888888888887774 55454443 2333333333
No 70
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.96 E-value=1.1e-28 Score=233.99 Aligned_cols=154 Identities=29% Similarity=0.330 Sum_probs=148.2
Q ss_pred cHHHHHHHHcCCHHHHHHHHhhCcCccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhcccccCccCCCCCChHHHH
Q 004365 11 KKDLFKRAMKGEWKEVVKNYEKDERIHKVKITRSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHI 90 (759)
Q Consensus 11 ~~~L~~aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~d~~G~TpLh~ 90 (759)
.++|+.|+..|+.+.++.++.. +.+++..|.+|+||||+||..|+.+++++|+++| ++++.+|..|+||||+
T Consensus 15 ~~~l~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g------~~~~~~~~~g~t~L~~ 86 (169)
T 2y1l_E 15 GKKLLEAARAGRDDEVRILMAN--GADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNG------ADVNAVDHAGMTPLRL 86 (169)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT------CCTTCCCTTSCCHHHH
T ss_pred cchHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC------CCCCccCCCCCCHHHH
Confidence 6789999999999999999988 7889999999999999999999999999999987 7899999999999999
Q ss_pred HHHcCCHHHHHHHHHcCCcccCCCCCCCCcHHHHHHHCCCHHHHHHHHhcCCCCCCCCccccCCCCCcHHHHHHHcCCHH
Q 004365 91 AAGLGNVSMCKCIATADRKLIGERNHENETPFFLAALHGHKDAFLCLHCLCASVDDGYTYSRRNDGETILHCAISGDYFD 170 (759)
Q Consensus 91 Aa~~g~~eiv~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~d~~g~TpLh~A~~~g~~~ 170 (759)
|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+
T Consensus 87 A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-----~~~~~g~t~l~~A~~~~~~~ 160 (169)
T 2y1l_E 87 AALFGHLEIVEVLLKNGAD-VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVN-----AQDKFGKTAFDISIDNGNED 160 (169)
T ss_dssp HHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-----CCCTTSCCHHHHHHHTTCHH
T ss_pred HHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-----CcCCCCCCHHHHHHHhCCHH
Confidence 9999999999999999999 99999999999999999999999999999999998 89999999999999999999
Q ss_pred HHHHHHHh
Q 004365 171 LAFQIIHL 178 (759)
Q Consensus 171 iv~~Ll~~ 178 (759)
++++|++.
T Consensus 161 ~~~~L~~~ 168 (169)
T 2y1l_E 161 LAEILQKL 168 (169)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHHc
Confidence 99999974
No 71
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.96 E-value=6.4e-29 Score=232.21 Aligned_cols=154 Identities=17% Similarity=0.152 Sum_probs=115.8
Q ss_pred CChHHHHHHHcCCHHHHHHHHHHhhhhcccccCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCcccCCCCCCCCcHHHH
Q 004365 45 GGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCIATADRKLIGERNHENETPFFL 124 (759)
Q Consensus 45 g~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~g~~~~~~~d~~G~TpLh~ 124 (759)
|.||||.||..|+.++++.|++.+ ..+++.+|..|+||||+ |..|+.+++++|+++|++ ++.+|..|+||||+
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~-----~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~ 74 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRE-----LVHPDALNRFGKTALQV-MMFGSTAIALELLKQGAS-PNVQDTSGTSPVHD 74 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTT-----CCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHH
T ss_pred cchHHHHHHHhCCHHHHHHHHHhh-----CcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHH
Confidence 457777777777777777777752 24677777777777777 777777777777777777 77777777777777
Q ss_pred HHHCCCHHHHHHHHhcCCCCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccccCCCCcHHHHHHhCCCCC
Q 004365 125 AALHGHKDAFLCLHCLCASVDDGYTYSRRNDGETILHCAISGDYFDLAFQIIHLYEKLVNSVNEKGVSPLHVLATKPNAF 204 (759)
Q Consensus 125 Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~~~~~ 204 (759)
|+..|+.+++++|+++|++++ .+|.+|+||||+|+..|+.+++++|++. .+++.+|..|.||||+|+..|+
T Consensus 75 A~~~~~~~~v~~Ll~~g~~~~-----~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--~~~~~~~~~g~t~l~~A~~~~~-- 145 (156)
T 1bd8_A 75 AARTGFLDTLKVLVEHGADVN-----VPDGTGALPIHLAVQEGHTAVVSFLAAE--SDLHRRDARGLTPLELALQRGA-- 145 (156)
T ss_dssp HHHTTCHHHHHHHHHTTCCSC-----CCCTTSCCHHHHHHHHTCHHHHHHHHTT--SCTTCCCTTSCCHHHHHHHSCC--
T ss_pred HHHcCcHHHHHHHHHcCCCCC-----CcCCCCCcHHHHHHHhChHHHHHHHHhc--cCCCCcCCCCCCHHHHHHHcCc--
Confidence 777777777777777777777 6777777777777777777777777774 6677777777777777777774
Q ss_pred ccCchHHHHHHHHhc
Q 004365 205 RSGSHLGRCIGTIYH 219 (759)
Q Consensus 205 ~~~~~~~~~~~Ll~~ 219 (759)
.+++++|+++
T Consensus 146 -----~~~v~~Ll~~ 155 (156)
T 1bd8_A 146 -----QDLVDILQGH 155 (156)
T ss_dssp -----HHHHHHHHTT
T ss_pred -----HHHHHHHHhh
Confidence 7777777653
No 72
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.96 E-value=9.4e-29 Score=233.98 Aligned_cols=156 Identities=18% Similarity=0.150 Sum_probs=149.3
Q ss_pred cHHHHHHHHcCCHHHHHHHHhhCcCccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhcccccCccCCCCCChHHHH
Q 004365 11 KKDLFKRAMKGEWKEVVKNYEKDERIHKVKITRSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHI 90 (759)
Q Consensus 11 ~~~L~~aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~d~~G~TpLh~ 90 (759)
.++||.|+..|+.+.++.++.. +.+++..|..|+||||+|+..|+.+++++|+++| ++++.+|..|+||||+
T Consensus 4 ~t~L~~A~~~g~~~~v~~ll~~--~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g------~~~~~~~~~g~t~L~~ 75 (167)
T 3v31_A 4 SLSVHQLAAQGEMLYLATRIEQ--ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNG------ADPQLLGKGRESALSL 75 (167)
T ss_dssp CCCHHHHHHTTCHHHHHHHHHH--SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT------CCTTCCCTTCCCHHHH
T ss_pred cchHHHHHHCCCHHHHHHHHHc--CCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcC------CCCCCcCCCCCcHHHH
Confidence 5789999999999999999988 6788999999999999999999999999999987 7889999999999999
Q ss_pred HHHcCCHHHHHHHHHcCCcccCCCCCCCCcHHHHHHHCCCHHHHHHHHhcCCCCCCCCccccCCCCCcHHHHHHHcCCHH
Q 004365 91 AAGLGNVSMCKCIATADRKLIGERNHENETPFFLAALHGHKDAFLCLHCLCASVDDGYTYSRRNDGETILHCAISGDYFD 170 (759)
Q Consensus 91 Aa~~g~~eiv~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~d~~g~TpLh~A~~~g~~~ 170 (759)
|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+
T Consensus 76 A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-----~~~~~g~t~l~~A~~~~~~~ 149 (167)
T 3v31_A 76 ACSKGYTDIVKMLLDCGVD-VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPT-----IETDSGYNSMDLAVALGYRS 149 (167)
T ss_dssp HHHHTCHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-----CCCTTSCCHHHHHHHHTCHH
T ss_pred HHHcCCHHHHHHHHHCCCC-CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-----CcCCCCCCHHHHHHHcCcHH
Confidence 9999999999999999999 99999999999999999999999999999999998 89999999999999999999
Q ss_pred HHHHHHHhcC
Q 004365 171 LAFQIIHLYE 180 (759)
Q Consensus 171 iv~~Ll~~~~ 180 (759)
++++|+++..
T Consensus 150 ~~~~L~~~~~ 159 (167)
T 3v31_A 150 VQQVIESHLL 159 (167)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999643
No 73
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.96 E-value=1.8e-28 Score=228.30 Aligned_cols=150 Identities=22% Similarity=0.222 Sum_probs=142.6
Q ss_pred cHHHHHHHHcCCHHHHHHHHhhCcCccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhcccccCccCCCCCChHHHH
Q 004365 11 KKDLFKRAMKGEWKEVVKNYEKDERIHKVKITRSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHI 90 (759)
Q Consensus 11 ~~~L~~aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~d~~G~TpLh~ 90 (759)
+++|+.|+..|+.+.++.++.. +.+.+ .+..|.||||+|+..|+.+++++|+++| ++++.+|..|+||||+
T Consensus 3 ~~~L~~A~~~g~~~~v~~Ll~~--g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g------~~~~~~~~~g~t~L~~ 73 (153)
T 1awc_B 3 GKKLLEAARAGQDDEVRILMAN--GAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAG------VSRDARTKVDRTPLHM 73 (153)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHH--TCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTT------CCTTCCCTTCCCHHHH
T ss_pred cHHHHHHHHcCCHHHHHHHHHc--CCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcC------CCCCCCCCCCCCHHHH
Confidence 5899999999999999999998 55555 5889999999999999999999999987 7889999999999999
Q ss_pred HHHcCCHHHHHHHHHcCCcccCCCCCCCCcHHHHHHHCCCHHHHHHHHhcCCCCCCCCccccCCCCCcHHHHHHHcCCHH
Q 004365 91 AAGLGNVSMCKCIATADRKLIGERNHENETPFFLAALHGHKDAFLCLHCLCASVDDGYTYSRRNDGETILHCAISGDYFD 170 (759)
Q Consensus 91 Aa~~g~~eiv~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~d~~g~TpLh~A~~~g~~~ 170 (759)
|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+
T Consensus 74 A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-----~~~~~g~t~l~~A~~~~~~~ 147 (153)
T 1awc_B 74 AASEGHANIVEVLLKHGAD-VNAKDMLKMTALHWATEHNHQEVVELLIKYGADVH-----TQSKFCKTAFDISIDNGNED 147 (153)
T ss_dssp HHHHTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-----CCCTTSCCHHHHHHHTTCHH
T ss_pred HHHcChHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-----ccCCCCCCHHHHHHHcCCHH
Confidence 9999999999999999999 99999999999999999999999999999999999 89999999999999999999
Q ss_pred HHHHH
Q 004365 171 LAFQI 175 (759)
Q Consensus 171 iv~~L 175 (759)
++++|
T Consensus 148 i~~~L 152 (153)
T 1awc_B 148 LAEIL 152 (153)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99987
No 74
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.96 E-value=1.7e-28 Score=238.07 Aligned_cols=155 Identities=23% Similarity=0.188 Sum_probs=149.2
Q ss_pred cHHHHHHHHcCCHHHHHHHHhhCcCccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhcccccCccCCCCCChHHHH
Q 004365 11 KKDLFKRAMKGEWKEVVKNYEKDERIHKVKITRSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHI 90 (759)
Q Consensus 11 ~~~L~~aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~d~~G~TpLh~ 90 (759)
.++||.|+..|+.+.++.++.. +.+++..|..|+||||+|+..|+.+++++|+++| ++++.+|..|+||||+
T Consensus 36 ~t~L~~A~~~g~~~~v~~Ll~~--~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g------~~~~~~~~~g~t~L~~ 107 (192)
T 2rfm_A 36 RTPLMVACMLGMENAIDKLVEN--FDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKG------SNVNTKDFSGKTPLMW 107 (192)
T ss_dssp CCHHHHHHHHTCGGGHHHHHHH--HCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHT------CCTTCCCTTSCCHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHh--ccccccccccCccHHHHHHHcCCHHHHHHHHHCC------CCCCCCCCCCCcHHHH
Confidence 6899999999999999999988 7788899999999999999999999999999997 7899999999999999
Q ss_pred HHHcCCHHHHHHHHHcCCcccCCCCCCCCcHHHHHHHCCCHHHHHHHHhcCCCCCCCCccccCCCCCcHHHHHHHcCCHH
Q 004365 91 AAGLGNVSMCKCIATADRKLIGERNHENETPFFLAALHGHKDAFLCLHCLCASVDDGYTYSRRNDGETILHCAISGDYFD 170 (759)
Q Consensus 91 Aa~~g~~eiv~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~d~~g~TpLh~A~~~g~~~ 170 (759)
|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+
T Consensus 108 A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-----~~~~~g~t~l~~A~~~~~~~ 181 (192)
T 2rfm_A 108 SIIFGYSEMSYFLLEHGAN-VNDRNLEGETPLIVASKYGRSEIVKKLLELGADIS-----ARDLTGLTAEASARIFGRQE 181 (192)
T ss_dssp HHHHTCHHHHHHHHHTTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-----CBCTTSCBHHHHHHHTTCHH
T ss_pred HHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-----CcCCCCCCHHHHHHHhCcHH
Confidence 9999999999999999999 99999999999999999999999999999999999 89999999999999999999
Q ss_pred HHHHHHHhc
Q 004365 171 LAFQIIHLY 179 (759)
Q Consensus 171 iv~~Ll~~~ 179 (759)
++++|++.+
T Consensus 182 ~v~~Ll~~~ 190 (192)
T 2rfm_A 182 VIKIFTEVR 190 (192)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhcc
Confidence 999999864
No 75
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.96 E-value=2.3e-28 Score=228.40 Aligned_cols=153 Identities=24% Similarity=0.296 Sum_probs=146.5
Q ss_pred cHHHHHHHHcCCHHHHHHHHhhCcCccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhcccccCccCCCCCChHHHH
Q 004365 11 KKDLFKRAMKGEWKEVVKNYEKDERIHKVKITRSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHI 90 (759)
Q Consensus 11 ~~~L~~aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~d~~G~TpLh~ 90 (759)
+++|+.|+..|+.+.++.++.. .+.+++..|..|+||||+ |..|+.+++++|+++| ++++.+|..|+||||+
T Consensus 3 ~~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g------~~~~~~~~~g~t~L~~ 74 (156)
T 1bd8_A 3 GDRLSGAAARGDVQEVRRLLHR-ELVHPDALNRFGKTALQV-MMFGSTAIALELLKQG------ASPNVQDTSGTSPVHD 74 (156)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHT-TCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTT------CCTTCCCTTSCCHHHH
T ss_pred chHHHHHHHhCCHHHHHHHHHh-hCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCC------CCCCCcCCCCCCHHHH
Confidence 5899999999999999999998 667889999999999999 9999999999999987 7899999999999999
Q ss_pred HHHcCCHHHHHHHHHcCCcccCCCCCCCCcHHHHHHHCCCHHHHHHHHhcCCCCCCCCccccCCCCCcHHHHHHHcCCHH
Q 004365 91 AAGLGNVSMCKCIATADRKLIGERNHENETPFFLAALHGHKDAFLCLHCLCASVDDGYTYSRRNDGETILHCAISGDYFD 170 (759)
Q Consensus 91 Aa~~g~~eiv~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~d~~g~TpLh~A~~~g~~~ 170 (759)
|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+++ ++++ .+|.+|.||||+|+..|+.+
T Consensus 75 A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~-----~~~~~g~t~l~~A~~~~~~~ 147 (156)
T 1bd8_A 75 AARTGFLDTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLH-----RRDARGLTPLELALQRGAQD 147 (156)
T ss_dssp HHHTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTT-----CCCTTSCCHHHHHHHSCCHH
T ss_pred HHHcCcHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCC-----CcCCCCCCHHHHHHHcCcHH
Confidence 9999999999999999998 999999999999999999999999999999 8888 89999999999999999999
Q ss_pred HHHHHHHh
Q 004365 171 LAFQIIHL 178 (759)
Q Consensus 171 iv~~Ll~~ 178 (759)
++++|+++
T Consensus 148 ~v~~Ll~~ 155 (156)
T 1bd8_A 148 LVDILQGH 155 (156)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHhh
Confidence 99999974
No 76
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.96 E-value=1.1e-28 Score=236.48 Aligned_cols=166 Identities=20% Similarity=0.183 Sum_probs=155.5
Q ss_pred cHHHHHHHHcCCHHHHHHHHhhCcCccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhcccccCccCCCCCChHHHH
Q 004365 11 KKDLFKRAMKGEWKEVVKNYEKDERIHKVKITRSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHI 90 (759)
Q Consensus 11 ~~~L~~aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~d~~G~TpLh~ 90 (759)
.++|+.|+..|+.+.++.++... +.+++..|..|+||||+||..|+.+++++|+++| ++++.+|..|+||||+
T Consensus 6 ~~~l~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g------~~~~~~~~~g~t~L~~ 78 (179)
T 3f6q_A 6 MDDIFTQCREGNAVAVRLWLDNT-ENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRG------ARINVMNRGDDTPLHL 78 (179)
T ss_dssp -CCHHHHHHHTCHHHHHHHHHCT-TSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT------CCTTCCCTTCCCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHhcC-cccccccCCCCCCHHHHHHHcCcHHHHHHHHHcC------CCCCCcCCCCCCHHHH
Confidence 56799999999999999999873 6778899999999999999999999999999987 7899999999999999
Q ss_pred HHHcCCHHHHHHHHHcCCcccCCCCCCCCcHHHHHHHCCCHHHHHHHHhcCCCCCCCCccccCCCCCcHHHHHHHcCCHH
Q 004365 91 AAGLGNVSMCKCIATADRKLIGERNHENETPFFLAALHGHKDAFLCLHCLCASVDDGYTYSRRNDGETILHCAISGDYFD 170 (759)
Q Consensus 91 Aa~~g~~eiv~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~d~~g~TpLh~A~~~g~~~ 170 (759)
|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..++.+
T Consensus 79 A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-----~~~~~g~tpl~~A~~~~~~~ 152 (179)
T 3f6q_A 79 AASHGHRDIVQKLLQYKAD-INAVNEHGNVPLHYACFWGQDQVAEDLVANGALVS-----ICNKYGEMPVDKAKAPLREL 152 (179)
T ss_dssp HHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSS-----BCCTTSCCGGGGSCHHHHHH
T ss_pred HHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcc-----hhccCCCCcHHHHHHHHHHH
Confidence 9999999999999999999 99999999999999999999999999999999999 89999999999999999999
Q ss_pred HHHHHHHhcCcCcccccCCC
Q 004365 171 LAFQIIHLYEKLVNSVNEKG 190 (759)
Q Consensus 171 iv~~Ll~~~~~~~~~~d~~G 190 (759)
++++|++ .+++++..+..+
T Consensus 153 ~~~~L~~-~g~~~~~~~~~~ 171 (179)
T 3f6q_A 153 LRERAEK-MGQNLNRIPYKD 171 (179)
T ss_dssp HHHHHHH-TTCCCSCBCCCC
T ss_pred HHHHHHH-hhcCcccCCccc
Confidence 9999999 477788776654
No 77
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.95 E-value=2.6e-28 Score=230.46 Aligned_cols=155 Identities=21% Similarity=0.203 Sum_probs=146.7
Q ss_pred ccHHHHHHHHcCCHHHHHHHHhhCcCccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhcccccCccCCCCCChHHH
Q 004365 10 LKKDLFKRAMKGEWKEVVKNYEKDERIHKVKITRSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLH 89 (759)
Q Consensus 10 ~~~~L~~aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~d~~G~TpLh 89 (759)
..++|+.|+..|+.+.++.++.. .+.+.+..+..|+||||+||..|+.+++++|+++| ++++.+|..|+||||
T Consensus 8 ~~~~l~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g------~~~~~~~~~g~t~L~ 80 (165)
T 3twr_A 8 ADRQLLEAAKAGDVETVKKLCTV-QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHG------ADVHAKDKGGLVPLH 80 (165)
T ss_dssp HHHHHHHHHHHTCHHHHHHHCCT-TTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTT------CCTTCCCTTSCCHHH
T ss_pred hhHHHHHHHHhCCHHHHHHHHHc-CCCCccccccCCCCHHHHHHHcChHHHHHHHHhcC------CCCCccCCCCCCHHH
Confidence 47899999999999999999986 36778888999999999999999999999999987 789999999999999
Q ss_pred HHHHcCCHHHHHHHHHcCCcccCCCCCCCCcHHHHHHHCCCHHHHHHHHhcCCCCCCCCccccCCCCCcHHHHHHHcCCH
Q 004365 90 IAAGLGNVSMCKCIATADRKLIGERNHENETPFFLAALHGHKDAFLCLHCLCASVDDGYTYSRRNDGETILHCAISGDYF 169 (759)
Q Consensus 90 ~Aa~~g~~eiv~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~d~~g~TpLh~A~~~g~~ 169 (759)
+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+++|++++ .+|.+|.||||+|+. |+.
T Consensus 81 ~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-----~~~~~g~t~l~~a~~-~~~ 153 (165)
T 3twr_A 81 NACSYGHYEVAELLVKHGAV-VNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPT-----KKNRDGNTPLDLVKD-GDT 153 (165)
T ss_dssp HHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-----CCCTTSCCTGGGSCT-TCH
T ss_pred HHHHcCcHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc-----ccCCCCCChhHhHhc-CCh
Confidence 99999999999999999999 99999999999999999999999999999999999 899999999999877 899
Q ss_pred HHHHHHHHh
Q 004365 170 DLAFQIIHL 178 (759)
Q Consensus 170 ~iv~~Ll~~ 178 (759)
+++++|+++
T Consensus 154 ~i~~~L~~~ 162 (165)
T 3twr_A 154 DIQDLLRGD 162 (165)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHhhc
Confidence 999999985
No 78
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.95 E-value=9e-31 Score=278.91 Aligned_cols=154 Identities=13% Similarity=0.002 Sum_probs=127.0
Q ss_pred CCChHHHHHHH-cCCHHHHHHHHHHhhhhcccccCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCcc--cCCCCCCCCc
Q 004365 44 SGGTALHIAVS-DGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCIATADRKL--IGERNHENET 120 (759)
Q Consensus 44 ~g~TpLh~Aa~-~g~~~iv~~Ll~~g~~~~~~~~~~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~g~~~--~~~~d~~G~T 120 (759)
.+.+++++|+. .++.+++++|+++| .+++||||+||..|+.++|++|+++|+.. .+..|..|.|
T Consensus 64 ~~ll~~~~a~~~~~~~~~~~~l~~~g-------------~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~t 130 (376)
T 2aja_A 64 RQLLCLYYAHYNRNAKQLWSDAHKKG-------------IKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQ 130 (376)
T ss_dssp HHHHHHHHHHTTTTCTTHHHHHHHHT-------------CCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHcC-------------CCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCC
Confidence 45789999887 58899999999985 34569999999999999999999999831 2245667899
Q ss_pred HHHHHHHCCCHHHHHHHHhcCCCCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCccc--ccCCCCcHHHHHH
Q 004365 121 PFFLAALHGHKDAFLCLHCLCASVDDGYTYSRRNDGETILHCAISGDYFDLAFQIIHLYEKLVNS--VNEKGVSPLHVLA 198 (759)
Q Consensus 121 pLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~--~d~~G~TpLh~Aa 198 (759)
|||+||.+|+.++|++|+++|+++...+++.++ .||||+|+.+|+.+++++|+++ +++++. .|..|.||||+|+
T Consensus 131 pL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~---~TpLh~Aa~~G~~eiv~~Ll~~-ga~~~~~~~d~~g~TpL~~Aa 206 (376)
T 2aja_A 131 AFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN---YHAFRLAAENGHLHVLNRLCEL-APTEATAMIQAENYYAFRWAA 206 (376)
T ss_dssp HHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH---HHHHHHHHHTTCHHHHHHHHHS-CGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHhCCCCccccccCCCC---CCHHHHHHHCCCHHHHHHHHHc-CCccchhccCCCCCCHHHHHH
Confidence 999999999999999999999863211111333 9999999999999999999995 777887 8999999999999
Q ss_pred -hCCCCCccCchHHHHHHHHhcCc
Q 004365 199 -TKPNAFRSGSHLGRCIGTIYHCI 221 (759)
Q Consensus 199 -~~~~~~~~~~~~~~~~~Ll~~ga 221 (759)
..|+ .+++++|+++|+
T Consensus 207 ~~~G~-------~eiv~~Ll~~ga 223 (376)
T 2aja_A 207 VGRGH-------HNVINFLLDCPV 223 (376)
T ss_dssp STTCC-------HHHHHHHTTSHH
T ss_pred HHCCC-------HHHHHHHHhCCC
Confidence 9995 999999999774
No 79
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.95 E-value=3.8e-28 Score=244.27 Aligned_cols=166 Identities=13% Similarity=0.039 Sum_probs=123.4
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHHHhhhhcccccCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCcccCCCCCCCCcH
Q 004365 42 TRSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCIATADRKLIGERNHENETP 121 (759)
Q Consensus 42 d~~g~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~g~~~~~~~d~~G~Tp 121 (759)
+..|.||||.|++.|+.++++.|+++| ++++. +..|.||||+||..|+.+++++|+++|++ ++.+|..|+||
T Consensus 2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g------~~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~d~~g~t~ 73 (239)
T 1ycs_B 2 EITGQVSLPPGKRTNLRKTGSERIAHG------MRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDD-PSLPNDEGITA 73 (239)
T ss_dssp ------------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSS-CCCCCTTSCCH
T ss_pred CccccccCchhhhhhhHHHHHHHhccC------CCccc-CchhhHHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCH
Confidence 346999999999999999999999998 45554 47899999999999999999999999997 99999999999
Q ss_pred HHHHHHCCCHHHHHHHHhcCCCCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccccCCCC-cHHHHH--H
Q 004365 122 FFLAALHGHKDAFLCLHCLCASVDDGYTYSRRNDGETILHCAISGDYFDLAFQIIHLYEKLVNSVNEKGV-SPLHVL--A 198 (759)
Q Consensus 122 Lh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~-TpLh~A--a 198 (759)
||+||..|+.+++++|+++|++++ .+|.+|+||||+|+..|+.+++++|+++ +++++.+|..|. ||||+| +
T Consensus 74 L~~A~~~g~~~~v~~Ll~~ga~~~-----~~d~~g~tpL~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~~~~t~l~~a~~~ 147 (239)
T 1ycs_B 74 LHNAVCAGHTEIVKFLVQFGVNVN-----AADSDGWTPLHCAASCNNVQVCKFLVES-GAAVFAMTYSDMQTAADKCEEM 147 (239)
T ss_dssp HHHHHHHTCHHHHHHHHHHTCCTT-----CCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCSSSCCCHHHHCCSS
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCC-----ccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCcceecCCCCcchHHHHHHh
Confidence 999999999999999999999999 8999999999999999999999999995 788999998887 999999 6
Q ss_pred hCCCCCccCchHHHHHHHHhcCcCccchhh
Q 004365 199 TKPNAFRSGSHLGRCIGTIYHCIFVDKLQE 228 (759)
Q Consensus 199 ~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~ 228 (759)
..| +.+++++|+++|++++..+.
T Consensus 148 ~~g-------~~~~~~~Ll~~~a~~~~~~~ 170 (239)
T 1ycs_B 148 EEG-------YTQCSQFLYGVQEKMGIMNK 170 (239)
T ss_dssp STT-------CCCHHHHHHHHHHHTTTTGG
T ss_pred hhc-------cHHHHHHHHHhhhccccccc
Confidence 666 48999999999999987764
No 80
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.94 E-value=3.2e-28 Score=244.84 Aligned_cols=176 Identities=12% Similarity=0.078 Sum_probs=134.0
Q ss_pred cHHHHHHHHcCCHHHHHHHHhhCcCccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhcccccCccCCCCCChHHHH
Q 004365 11 KKDLFKRAMKGEWKEVVKNYEKDERIHKVKITRSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHI 90 (759)
Q Consensus 11 ~~~L~~aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~d~~G~TpLh~ 90 (759)
.++|+.|+..|+.+.+..++.. +++++. +..|.||||.||..|+.++|++|++.| ++++.+|..|+||||+
T Consensus 6 ~t~L~~a~~~~~~~~~~~ll~~--g~~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g------~~~~~~d~~g~t~L~~ 76 (239)
T 1ycs_B 6 QVSLPPGKRTNLRKTGSERIAH--GMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEV------DDPSLPNDEGITALHN 76 (239)
T ss_dssp ----------------------------------CHHHHHHHHHHTCHHHHHHHTSTT------SSCCCCCTTSCCHHHH
T ss_pred cccCchhhhhhhHHHHHHHhcc--CCCccc-CchhhHHHHHHHHcCCHHHHHHHHHcC------CCCCCcCCCCCCHHHH
Confidence 6889999999999999999987 777775 588999999999999999999999987 6899999999999999
Q ss_pred HHHcCCHHHHHHHHHcCCcccCCCCCCCCcHHHHHHHCCCHHHHHHHHhcCCCCCCCCccccCCCCC-cHHHHH--HHcC
Q 004365 91 AAGLGNVSMCKCIATADRKLIGERNHENETPFFLAALHGHKDAFLCLHCLCASVDDGYTYSRRNDGE-TILHCA--ISGD 167 (759)
Q Consensus 91 Aa~~g~~eiv~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~d~~g~-TpLh~A--~~~g 167 (759)
||..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+++|++++ .++..|. ||||+| +..|
T Consensus 77 A~~~g~~~~v~~Ll~~ga~-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~-----~~~~~~~~t~l~~a~~~~~g 150 (239)
T 1ycs_B 77 AVCAGHTEIVKFLVQFGVN-VNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVF-----AMTYSDMQTAADKCEEMEEG 150 (239)
T ss_dssp HHHHTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-----CCCSSSCCCHHHHCCSSSTT
T ss_pred HHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-----eecCCCCcchHHHHHHhhhc
Confidence 9999999999999999999 99999999999999999999999999999999999 7887777 999999 8899
Q ss_pred CHHHHHHHHHhcCcCcccc---------cCCCCcHHHHHHhCCC
Q 004365 168 YFDLAFQIIHLYEKLVNSV---------NEKGVSPLHVLATKPN 202 (759)
Q Consensus 168 ~~~iv~~Ll~~~~~~~~~~---------d~~G~TpLh~Aa~~~~ 202 (759)
+.+++++|++. +++++.. +..|.+|++++...|.
T Consensus 151 ~~~~~~~Ll~~-~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~ 193 (239)
T 1ycs_B 151 YTQCSQFLYGV-QEKMGIMNKGVIYALWDYEPQNDDELPMKEGD 193 (239)
T ss_dssp CCCHHHHHHHH-HHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred cHHHHHHHHHh-hhcccccccceEEEEeccCCCCCCcccccCCC
Confidence 99999999995 5556665 5668888888888774
No 81
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.94 E-value=2.3e-27 Score=215.95 Aligned_cols=132 Identities=18% Similarity=0.129 Sum_probs=126.7
Q ss_pred CccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhcccccCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCcccCCC
Q 004365 35 RIHKVKITRSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCIATADRKLIGER 114 (759)
Q Consensus 35 ~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~g~~~~~~~ 114 (759)
+.+++..|..|+||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+. |+.+++++|+++|++ ++.+
T Consensus 2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g------~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~-~~~~ 73 (136)
T 1d9s_A 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAG------ADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAE-PNCA 73 (136)
T ss_dssp CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTT------CCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCC-SSCC
T ss_pred CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcC------CCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCC-CCCc
Confidence 5678889999999999999999999999999987 7899999999999999999 999999999999999 9999
Q ss_pred CCC-CCcHHHHHHHCCCHHHHHHHHhcCCCCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhc
Q 004365 115 NHE-NETPFFLAALHGHKDAFLCLHCLCASVDDGYTYSRRNDGETILHCAISGDYFDLAFQIIHLY 179 (759)
Q Consensus 115 d~~-G~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~ 179 (759)
|.. |+||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..++.+++++|++++
T Consensus 74 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-----~~d~~g~tpl~~A~~~~~~~~~~~Ll~~G 134 (136)
T 1d9s_A 74 DPATLTRPVHDAAREGFLDTLVVLHRAGARLD-----VCDAWGRLPVDLAEEQGHRDIARYLHAAT 134 (136)
T ss_dssp BTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCC-----CCSSSSSCHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-----ccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 999 9999999999999999999999999999 89999999999999999999999999963
No 82
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.94 E-value=5.4e-28 Score=232.05 Aligned_cols=161 Identities=12% Similarity=0.006 Sum_probs=142.2
Q ss_pred ccHHHHHHHHcCCHHHHHHHHhhCcCccccccC-CCCChHHHHHHHcCCH----HHHHHHHHHhhhhcccccCccCCCCC
Q 004365 10 LKKDLFKRAMKGEWKEVVKNYEKDERIHKVKIT-RSGGTALHIAVSDGQE----EIVEDLVRIIKEKQQLEALTIGDERG 84 (759)
Q Consensus 10 ~~~~L~~aa~~g~~~~v~~lL~~~~~~~~~~~d-~~g~TpLh~Aa~~g~~----~iv~~Ll~~g~~~~~~~~~~~~d~~G 84 (759)
..++|+.||..|+.+.++.++.. + ++..+ ..|+||||+|+..|+. +++++|+++| +++|.+|.+|
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~--~--~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~G------advn~~d~~g 75 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEK--G--YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKG------ADIKSRTKEG 75 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHH--S--SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTT------CCSSCCCTTC
T ss_pred cccHHHHHHHcCCHHHHHHHHhc--C--cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCC------CCCCCCCCCC
Confidence 35789999999999999999887 3 23344 7799999999999985 5999999997 8899999999
Q ss_pred ChHHHHHHHcCC------HHHHHHHHHcCCcccCCCCCCCC-cHHHHHHHCCC-----HHHHHHHHh-cCCCCCCCCccc
Q 004365 85 STPLHIAAGLGN------VSMCKCIATADRKLIGERNHENE-TPFFLAALHGH-----KDAFLCLHC-LCASVDDGYTYS 151 (759)
Q Consensus 85 ~TpLh~Aa~~g~------~eiv~~Ll~~g~~~~~~~d~~G~-TpLh~Aa~~g~-----~~iv~~Ll~-~ga~~~~~~~~~ 151 (759)
+||||+|+..|+ .+++++|+++|++ +|.+|..|+ ||||+|+..|. .+++++|++ +|++++ .
T Consensus 76 ~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gad-in~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~-----~ 149 (186)
T 3t8k_A 76 TTLFFPLFQGGGNDITGTTELCKIFLEKGAD-ITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLL-----I 149 (186)
T ss_dssp CCTHHHHHHHCTTCHHHHHHHHHHHHHTTCC-SSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTT-----C
T ss_pred CcHHHHHHHcCCcchhhHHHHHHHHHHCCCC-CCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCc-----c
Confidence 999999999997 6899999999999 999999999 99999999554 569999999 999999 9
Q ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCccccc
Q 004365 152 RRNDGETILHCAISGDYFDLAFQIIHLYEKLVNSVN 187 (759)
Q Consensus 152 ~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d 187 (759)
+|..|.||||+|++.|+.+++++|++. ....+.++
T Consensus 150 ~d~~G~TpL~~A~~~~~~~~v~~L~~~-~~~~~~~~ 184 (186)
T 3t8k_A 150 KDKWGLTALEFVKRCQKPIALKMMEDY-IKKYNLKE 184 (186)
T ss_dssp CCTTSCCHHHHHHTTTCHHHHHHHHHH-HHHHTCCC
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHH-HHHHhccc
Confidence 999999999999999999999999984 33355444
No 83
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.94 E-value=1.4e-27 Score=223.14 Aligned_cols=146 Identities=17% Similarity=0.129 Sum_probs=119.7
Q ss_pred cccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhcccccCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCcccCCCCCCC
Q 004365 39 VKITRSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCIATADRKLIGERNHEN 118 (759)
Q Consensus 39 ~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~g~~~~~~~d~~G 118 (759)
...+..|.||||+||..|+.++|++|+++| ++++.+|..|+||||+|+ .|+.+++++|+++|++ ++.+|..|
T Consensus 6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g------~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~-~~~~d~~g 77 (156)
T 1bi7_B 6 GSSMEPSADWLATAAARGRVEEVRALLEAG------ANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAE-PNCADPAT 77 (156)
T ss_dssp ----CCSTTHHHHHHHHTCHHHHHHHHTTT------CCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC-CCCCCTTT
T ss_pred cCCCccchHHHHHHHHcCCHHHHHHHHHcC------CCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCC-CCCcCCCC
Confidence 345788999999999999999999999987 789999999999999996 9999999999999998 99999999
Q ss_pred Cc-HHHHHHHCCCHHHHHHHHhcCCCCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccccCCCCcHHHHH
Q 004365 119 ET-PFFLAALHGHKDAFLCLHCLCASVDDGYTYSRRNDGETILHCAISGDYFDLAFQIIHLYEKLVNSVNEKGVSPLHVL 197 (759)
Q Consensus 119 ~T-pLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A 197 (759)
+| |||+|+..|+.+++++|+++|++++ .+|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||.+-+
T Consensus 78 ~ttpL~~A~~~~~~~~v~~Ll~~ga~~~-----~~d~~g~tpl~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~~~~~ 151 (156)
T 1bi7_B 78 LTRPVHDAAREGFLDTLVVLHRAGARLD-----VRDAWGRLPVDLAEELGHRDVARYLRA-AAGGTRGSNHARIDAAEGP 151 (156)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHHTCCSS-----CCCTTCCCHHHHHHHHTCHHHHHHHSS-CC-----------------
T ss_pred CcHHHHHHHHCCCHHHHHHHHHcCCCCc-----ccCCCCCCHHHHHHHhCHHHHHHHHHH-cCCCCCccCcCcCcccccC
Confidence 99 9999999999999999999999999 899999999999999999999999999 5888999999999998854
Q ss_pred H
Q 004365 198 A 198 (759)
Q Consensus 198 a 198 (759)
.
T Consensus 152 ~ 152 (156)
T 1bi7_B 152 S 152 (156)
T ss_dssp -
T ss_pred C
Confidence 3
No 84
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.94 E-value=8.6e-28 Score=230.65 Aligned_cols=160 Identities=12% Similarity=-0.064 Sum_probs=142.2
Q ss_pred CChHHHHHHHcCCHHHHHHHHHHhhhhcccccCccCC-CCCChHHHHHHHcCCH----HHHHHHHHcCCcccCCCCCCCC
Q 004365 45 GGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGD-ERGSTPLHIAAGLGNV----SMCKCIATADRKLIGERNHENE 119 (759)
Q Consensus 45 g~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~d-~~G~TpLh~Aa~~g~~----eiv~~Ll~~g~~~~~~~d~~G~ 119 (759)
+.++||.||+.|+.+.++.+++.+ ++.++ ..|+||||+|+..|+. +++++|+++|++ +|.+|..|+
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~--------~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gad-vn~~d~~g~ 76 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKG--------YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGAD-IKSRTKEGT 76 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHS--------SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCC-SSCCCTTCC
T ss_pred cccHHHHHHHcCCHHHHHHHHhcC--------cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCC-CCCCCCCCC
Confidence 578999999999999999999864 45555 7899999999999985 599999999999 999999999
Q ss_pred cHHHHHHHCCC------HHHHHHHHhcCCCCCCCCccccCCCCC-cHHHHHHHcC-----CHHHHHHHHHhcCcCccccc
Q 004365 120 TPFFLAALHGH------KDAFLCLHCLCASVDDGYTYSRRNDGE-TILHCAISGD-----YFDLAFQIIHLYEKLVNSVN 187 (759)
Q Consensus 120 TpLh~Aa~~g~------~~iv~~Ll~~ga~~~~~~~~~~d~~g~-TpLh~A~~~g-----~~~iv~~Ll~~~~~~~~~~d 187 (759)
||||+|+..|+ .+++++|+++|++++ .+|..|+ ||||+|+..+ +.+++++|++..|++++.+|
T Consensus 77 TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin-----~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d 151 (186)
T 3t8k_A 77 TLFFPLFQGGGNDITGTTELCKIFLEKGADIT-----ALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKD 151 (186)
T ss_dssp CTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSS-----SCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCC
T ss_pred cHHHHHHHcCCcchhhHHHHHHHHHHCCCCCC-----ccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccC
Confidence 99999999987 688999999999999 8999999 9999999954 46799999985588999999
Q ss_pred CCCCcHHHHHHhCCCCCccCchHHHHHHHHhcCcCccc
Q 004365 188 EKGVSPLHVLATKPNAFRSGSHLGRCIGTIYHCIFVDK 225 (759)
Q Consensus 188 ~~G~TpLh~Aa~~~~~~~~~~~~~~~~~Ll~~ga~~~~ 225 (759)
..|.||||+|++.|+ .+++++|.+...+.+.
T Consensus 152 ~~G~TpL~~A~~~~~-------~~~v~~L~~~~~~~~~ 182 (186)
T 3t8k_A 152 KWGLTALEFVKRCQK-------PIALKMMEDYIKKYNL 182 (186)
T ss_dssp TTSCCHHHHHHTTTC-------HHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHcCC-------HHHHHHHHHHHHHHhc
Confidence 999999999999985 8899999876554443
No 85
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.94 E-value=1.1e-26 Score=211.54 Aligned_cols=134 Identities=12% Similarity=0.033 Sum_probs=128.3
Q ss_pred cccCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCcccCCCCCCCCcHHHHHHHCCCHHHHHHHHhcCCCCCCCCccccC
Q 004365 74 LEALTIGDERGSTPLHIAAGLGNVSMCKCIATADRKLIGERNHENETPFFLAALHGHKDAFLCLHCLCASVDDGYTYSRR 153 (759)
Q Consensus 74 ~~~~~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~d 153 (759)
+.+++.+|..|+||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+. |+.+++++|+++|++++ .+|
T Consensus 2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~-----~~~ 74 (136)
T 1d9s_A 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGAD-PNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPN-----CAD 74 (136)
T ss_dssp CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSS-----CCB
T ss_pred CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCC-cCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCC-----CcC
Confidence 368999999999999999999999999999999998 99999999999999999 99999999999999999 899
Q ss_pred CC-CCcHHHHHHHcCCHHHHHHHHHhcCcCcccccCCCCcHHHHHHhCCCCCccCchHHHHHHHHhcCcC
Q 004365 154 ND-GETILHCAISGDYFDLAFQIIHLYEKLVNSVNEKGVSPLHVLATKPNAFRSGSHLGRCIGTIYHCIF 222 (759)
Q Consensus 154 ~~-g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~~~~~~~~~~~~~~~~Ll~~ga~ 222 (759)
.. |+||||+|+..|+.+++++|++ .+++++.+|..|.||||+|+..++ .+++++|+++|+|
T Consensus 75 ~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~d~~g~tpl~~A~~~~~-------~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 75 PATLTRPVHDAAREGFLDTLVVLHR-AGARLDVCDAWGRLPVDLAEEQGH-------RDIARYLHAATGD 136 (136)
T ss_dssp TTTTBCHHHHHHHHTCHHHHHHHHH-TCCCCCCCSSSSSCHHHHHHHHTC-------HHHHHHHHHHHCC
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCccCCCCCCHHHHHHHcCC-------HHHHHHHHHcCCC
Confidence 99 9999999999999999999999 478899999999999999999985 9999999999985
No 86
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.93 E-value=1.1e-25 Score=204.72 Aligned_cols=126 Identities=25% Similarity=0.271 Sum_probs=119.7
Q ss_pred cCCCCChHHHHHHHcCCHHHHHHHHHHhhhhcccccCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCcccCCCCCCCCc
Q 004365 41 ITRSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCIATADRKLIGERNHENET 120 (759)
Q Consensus 41 ~d~~g~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~g~~~~~~~d~~G~T 120 (759)
....|.||||+||..|+.++|++|+++| ++++.+|..|+||||+||..|+.+++++|+++|++ ++.+|..|+|
T Consensus 10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~t 82 (136)
T 2jab_A 10 HGSDLGKKLLEAARAGQDDEVRILMANG------ADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD-VNAVDAIGFT 82 (136)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHHHTT------CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCC
T ss_pred ccccccHHHHHHHHhCCHHHHHHHHHcC------CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCC
Confidence 4567899999999999999999999987 78999999999999999999999999999999998 9999999999
Q ss_pred HHHHHHHCCCHHHHHHHHhcCCCCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHh
Q 004365 121 PFFLAALHGHKDAFLCLHCLCASVDDGYTYSRRNDGETILHCAISGDYFDLAFQIIHL 178 (759)
Q Consensus 121 pLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~ 178 (759)
|||+|+..|+.+++++|+++|++++ .+|.+|.||||+|+..|+.+++++|++.
T Consensus 83 ~L~~A~~~~~~~~v~~Ll~~g~~~~-----~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ 135 (136)
T 2jab_A 83 PLHLAAFIGHLEIAEVLLKHGADVN-----AQDKFGKTAFDISIGNGNEDLAEILQKL 135 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCTT-----CCCTTSCCHHHHHHHTTCHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCc-----CcCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence 9999999999999999999999998 8999999999999999999999999984
No 87
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.93 E-value=7.3e-25 Score=196.25 Aligned_cols=125 Identities=28% Similarity=0.441 Sum_probs=120.0
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHHhhhhcccccCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCcccCCCCCCCCcHHH
Q 004365 44 SGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCIATADRKLIGERNHENETPFF 123 (759)
Q Consensus 44 ~g~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~g~~~~~~~d~~G~TpLh 123 (759)
+|+||||+|+..|+.+++++|+++| .+++.+|..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~------~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~l~ 73 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAG------ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLH 73 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHT------CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHH
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcC------CCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCC-CcccCCCCCcHHH
Confidence 5899999999999999999999987 77889999999999999999999999999999998 9999999999999
Q ss_pred HHHHCCCHHHHHHHHhcCCCCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCc
Q 004365 124 LAALHGHKDAFLCLHCLCASVDDGYTYSRRNDGETILHCAISGDYFDLAFQIIHLYEK 181 (759)
Q Consensus 124 ~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~ 181 (759)
+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++ |+
T Consensus 74 ~A~~~~~~~~~~~Ll~~g~~~~-----~~~~~g~t~l~~A~~~~~~~~~~~Ll~~-Ga 125 (126)
T 1n0r_A 74 LAARNGHLEVVKLLLEAGADVN-----AKDKNGRTPLHLAARNGHLEVVKLLLEA-GA 125 (126)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTT-----CCCTTSCCHHHHHHHTTCHHHHHHHHHH-TC
T ss_pred HHHHcChHHHHHHHHHcCCCCc-----ccCCCCCCHHHHHHHcCcHHHHHHHHHc-CC
Confidence 9999999999999999999998 8999999999999999999999999996 44
No 88
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.92 E-value=9.8e-26 Score=205.48 Aligned_cols=130 Identities=24% Similarity=0.223 Sum_probs=118.7
Q ss_pred ccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhcccccCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCcccCCCC
Q 004365 36 IHKVKITRSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCIATADRKLIGERN 115 (759)
Q Consensus 36 ~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~g~~~~~~~d 115 (759)
+++ .+|.+|+||||+||..|+.+++++|++.| ++++.+|..|+||||+|+..|+.+++++|+++|++ ++.+|
T Consensus 2 ~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g------~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~ 73 (137)
T 3c5r_A 2 IDP-FTNHRGETLLHIASIKGDIPSVEYLLQNG------SDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKAL-VNTTG 73 (137)
T ss_dssp --C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTT------CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCC
T ss_pred CCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcC------CCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCc-ccCcC
Confidence 455 56899999999999999999999999986 78899999999999999999999999999999998 99999
Q ss_pred CCCCcHHHHHHHCCCHHHHHHHHhcCCCCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHh
Q 004365 116 HENETPFFLAALHGHKDAFLCLHCLCASVDDGYTYSRRNDGETILHCAISGDYFDLAFQIIHL 178 (759)
Q Consensus 116 ~~G~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~ 178 (759)
..|+||||+|+..|+.+++++|+++|++++ .+|.+|.||||+|+..+..+++++|.+.
T Consensus 74 ~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-----~~~~~g~tpl~~A~~~~~~~~l~~l~~~ 131 (137)
T 3c5r_A 74 YQNDSPLHDAAKNGHVDIVKLLLSYGASRN-----AVNIFGLRPVDYTDDESMKSLLLLPEKN 131 (137)
T ss_dssp GGGCCHHHHHHHTTCHHHHHHHHHTTCCTT-----CCCTTSCCGGGGCCCHHHHHHHSCC---
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-----CCCCCCCCHHHHHhhccHHHHHhhcccc
Confidence 999999999999999999999999999998 8999999999999999999998887764
No 89
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.92 E-value=2.8e-25 Score=207.36 Aligned_cols=143 Identities=18% Similarity=0.158 Sum_probs=118.3
Q ss_pred CcccccHHHHHHHHcCCHHHHHHHHhhCcCccccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhcccccCccCCCCCC
Q 004365 6 DIDQLKKDLFKRAMKGEWKEVVKNYEKDERIHKVKITRSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGS 85 (759)
Q Consensus 6 d~~~~~~~L~~aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~d~~G~ 85 (759)
..+...++||.|+..|+.+.++.++.. +.+++..|..|+||||+|+ .|+.+++++|+++| ++++.+|..|+
T Consensus 8 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g------~~~~~~d~~g~ 78 (156)
T 1bi7_B 8 SMEPSADWLATAAARGRVEEVRALLEA--GANPNAPNSYGRRPIQVMM-MGSARVAELLLLHG------AEPNCADPATL 78 (156)
T ss_dssp --CCSTTHHHHHHHHTCHHHHHHHHTT--TCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTT------CCCCCCCTTTC
T ss_pred CCccchHHHHHHHHcCCHHHHHHHHHc--CCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcC------CCCCCcCCCCC
Confidence 344558899999999999999999987 7889999999999999996 99999999999987 78999999999
Q ss_pred h-HHHHHHHcCCHHHHHHHHHcCCcccCCCCCCCCcHHHHHHHCCCHHHHHHHHhcCCCCCCCCccccCCCCCcHHHHH
Q 004365 86 T-PLHIAAGLGNVSMCKCIATADRKLIGERNHENETPFFLAALHGHKDAFLCLHCLCASVDDGYTYSRRNDGETILHCA 163 (759)
Q Consensus 86 T-pLh~Aa~~g~~eiv~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~d~~g~TpLh~A 163 (759)
| |||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+++|++++ .+|..|.||.+-+
T Consensus 79 ttpL~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~-----~~~~~g~t~~~~~ 151 (156)
T 1bi7_B 79 TRPVHDAAREGFLDTLVVLHRAGAR-LDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTR-----GSNHARIDAAEGP 151 (156)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHHTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC----------------------
T ss_pred cHHHHHHHHCCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCC-----ccCcCcCcccccC
Confidence 9 99999999999999999999999 99999999999999999999999999999999999 8999999998744
No 90
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.91 E-value=4e-24 Score=191.40 Aligned_cols=126 Identities=26% Similarity=0.392 Sum_probs=121.2
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHcCCcccCCCCCCCCcHHHHHHHCCCHHHHHHHHhcCCCCCCCCccccCCCCCcHHHH
Q 004365 83 RGSTPLHIAAGLGNVSMCKCIATADRKLIGERNHENETPFFLAALHGHKDAFLCLHCLCASVDDGYTYSRRNDGETILHC 162 (759)
Q Consensus 83 ~G~TpLh~Aa~~g~~eiv~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~d~~g~TpLh~ 162 (759)
+|+||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|+++|++++ .+|..|.||||+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-----~~~~~g~t~l~~ 74 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN-----AKDKNGRTPLHL 74 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-----CCCTTSCCHHHH
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCc-----ccCCCCCcHHHH
Confidence 589999999999999999999999998 99999999999999999999999999999999998 899999999999
Q ss_pred HHHcCCHHHHHHHHHhcCcCcccccCCCCcHHHHHHhCCCCCccCchHHHHHHHHhcCcC
Q 004365 163 AISGDYFDLAFQIIHLYEKLVNSVNEKGVSPLHVLATKPNAFRSGSHLGRCIGTIYHCIF 222 (759)
Q Consensus 163 A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~~~~~~~~~~~~~~~~Ll~~ga~ 222 (759)
|+..|+.+++++|+++ +.+++.+|..|.||||+|+..++ .+++++|+++|+|
T Consensus 75 A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~-------~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 75 AARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGH-------LEVVKLLLEAGAY 126 (126)
T ss_dssp HHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTC-------HHHHHHHHHHTCC
T ss_pred HHHcChHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHcCc-------HHHHHHHHHcCCC
Confidence 9999999999999995 78899999999999999999995 9999999999986
No 91
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.91 E-value=2.2e-24 Score=196.24 Aligned_cols=127 Identities=19% Similarity=0.126 Sum_probs=119.2
Q ss_pred CCCCCChHHHHHHHcCCHHHHHHHHHcCCcccCCCCCCCCcHHHHHHHCCCHHHHHHHHhcCCCCCCCCccccCCCCCcH
Q 004365 80 GDERGSTPLHIAAGLGNVSMCKCIATADRKLIGERNHENETPFFLAALHGHKDAFLCLHCLCASVDDGYTYSRRNDGETI 159 (759)
Q Consensus 80 ~d~~G~TpLh~Aa~~g~~eiv~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~d~~g~Tp 159 (759)
....|.||||+||..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+++|++++ .+|.+|.||
T Consensus 10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-----~~d~~g~t~ 83 (136)
T 2jab_A 10 HGSDLGKKLLEAARAGQDDEVRILMANGAD-VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVN-----AVDAIGFTP 83 (136)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-----CCCTTCCCH
T ss_pred ccccccHHHHHHHHhCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-----cCCCCCCCH
Confidence 456789999999999999999999999998 99999999999999999999999999999999998 899999999
Q ss_pred HHHHHHcCCHHHHHHHHHhcCcCcccccCCCCcHHHHHHhCCCCCccCchHHHHHHHHhcC
Q 004365 160 LHCAISGDYFDLAFQIIHLYEKLVNSVNEKGVSPLHVLATKPNAFRSGSHLGRCIGTIYHC 220 (759)
Q Consensus 160 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~~~~~~~~~~~~~~~~Ll~~g 220 (759)
||+|+..|+.+++++|+++ +++++.+|.+|.||||+|+..++ .+++++|+++|
T Consensus 84 L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~tpl~~A~~~~~-------~~~~~~Ll~~G 136 (136)
T 2jab_A 84 LHLAAFIGHLEIAEVLLKH-GADVNAQDKFGKTAFDISIGNGN-------EDLAEILQKLN 136 (136)
T ss_dssp HHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTC-------HHHHHHHHHC-
T ss_pred HHHHHHcCCHHHHHHHHHc-CCCCcCcCCCCCCHHHHHHHCCC-------HHHHHHHHHcC
Confidence 9999999999999999995 78899999999999999999995 89999999876
No 92
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.91 E-value=8.6e-25 Score=209.98 Aligned_cols=140 Identities=19% Similarity=0.114 Sum_probs=128.2
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHHHhhhhcccccCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCcccCCCC-CCCCc
Q 004365 42 TRSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCIATADRKLIGERN-HENET 120 (759)
Q Consensus 42 d~~g~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~g~~~~~~~d-~~G~T 120 (759)
+.+|+||||+||..|+.++++.|++ | .+++.+|..|+||||+||..|+.+++++|+++|++ ++.+| ..|+|
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~------~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~~g~t 112 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE-D------RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGAD-LDHRDMRGGLT 112 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT-T------SCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCSSSSCC
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh-c------CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCC
Confidence 5689999999999999999999998 6 78999999999999999999999999999999999 88888 89999
Q ss_pred HHHHHHHCCCHHHHHHHHhcCCCCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccccCCCCcHHHHHHhC
Q 004365 121 PFFLAALHGHKDAFLCLHCLCASVDDGYTYSRRNDGETILHCAISGDYFDLAFQIIHLYEKLVNSVNEKGVSPLHVLATK 200 (759)
Q Consensus 121 pLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~ 200 (759)
|||+|+..|+.+++++|+++|++++ .+|.+|+||||+|++.++. ..+.+||++|+..
T Consensus 113 pL~~A~~~~~~~~v~~Ll~~ga~~~-----~~d~~g~tpl~~A~~~~~~------------------~~~~~~l~~a~~~ 169 (183)
T 3deo_A 113 ALHMAAGYVRPEVVEALVELGADIE-----VEDERGLTALELAREILKT------------------TPKGNPMQFGRRI 169 (183)
T ss_dssp HHHHHHHTTCHHHHHHHHHHTCCTT-----CCCTTSCCHHHHHHHHHHT------------------CCCCSHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHcCCCCc-----CCCCCCCCHHHHHHHhccC------------------cccccHHHHHHHc
Confidence 9999999999999999999999999 8999999999999874321 3578999999999
Q ss_pred CCCCccCchHHHHHHHHhc
Q 004365 201 PNAFRSGSHLGRCIGTIYH 219 (759)
Q Consensus 201 ~~~~~~~~~~~~~~~Ll~~ 219 (759)
| +.++++.|.++
T Consensus 170 ~-------~~~i~~~L~~~ 181 (183)
T 3deo_A 170 G-------LEKVINVLEGQ 181 (183)
T ss_dssp H-------HHHHHHHHHTC
T ss_pred C-------HHHHHHHHHHh
Confidence 8 58899988765
No 93
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.91 E-value=6.9e-25 Score=220.95 Aligned_cols=146 Identities=18% Similarity=0.108 Sum_probs=132.8
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHHHhhhhcccccCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCcccCCCC-CCCCc
Q 004365 42 TRSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCIATADRKLIGERN-HENET 120 (759)
Q Consensus 42 d~~g~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~g~~~~~~~d-~~G~T 120 (759)
+.+|+||||+||..|+.++|+.|++ | ++++.+|..|+||||+||..|+.++|++|+++|++ ++.+| ..|+|
T Consensus 42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~------~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~g~t 113 (244)
T 3ui2_A 42 VSEYETPWWTAARKADEQALSQLLE-D------RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGAD-LDHRDMRGGLT 113 (244)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHTTT-T------CCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC-TTCCCSSSCCC
T ss_pred ccCCCCHHHHHHHcCCHHHHHHHHc-C------CCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCcCCCCCCCC
Confidence 4579999999999999999999998 6 78999999999999999999999999999999999 88888 88999
Q ss_pred HHHHHHHCCCHHHHHHHHhcCCCCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccccCCCCcHHHHHHhC
Q 004365 121 PFFLAALHGHKDAFLCLHCLCASVDDGYTYSRRNDGETILHCAISGDYFDLAFQIIHLYEKLVNSVNEKGVSPLHVLATK 200 (759)
Q Consensus 121 pLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~ 200 (759)
|||+|+..|+.++|++|+++|++++ .+|..|.||||+|+..++ +..+.||||+|+..
T Consensus 114 ~L~~A~~~g~~~~v~~Ll~~ga~~~-----~~d~~g~t~l~~A~~~~~------------------~~~~~~~l~~a~~~ 170 (244)
T 3ui2_A 114 ALHMAAGYVRPEVVEALVELGADIE-----VEDERGLTALELAREILK------------------TTPKGNPMQFGRRI 170 (244)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTT-----CCCTTCCCHHHHHHHHHT------------------TCCCSSHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCCC-----CCCCCCCcHHHHHHHHHh------------------ccCCCCHHHHHHHc
Confidence 9999999999999999999999999 899999999999986221 25689999999999
Q ss_pred CCCCccCchHHHHHHHHhcCcCccc
Q 004365 201 PNAFRSGSHLGRCIGTIYHCIFVDK 225 (759)
Q Consensus 201 ~~~~~~~~~~~~~~~Ll~~ga~~~~ 225 (759)
| +.+++++|++++.+...
T Consensus 171 g-------~~~iv~~L~~~~~~~~~ 188 (244)
T 3ui2_A 171 G-------LEKVINVLEGQVFEYAE 188 (244)
T ss_dssp H-------HHHHHHHHHHHHEEEEE
T ss_pred C-------hHHHHHHHHHhcccccc
Confidence 8 58999999988766543
No 94
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.91 E-value=6.1e-26 Score=228.68 Aligned_cols=141 Identities=19% Similarity=0.171 Sum_probs=124.3
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHHHhhhhcccccCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCcccCCCCCCCCcHH
Q 004365 43 RSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCIATADRKLIGERNHENETPF 122 (759)
Q Consensus 43 ~~g~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~g~~~~~~~d~~G~TpL 122 (759)
..+.+++++++..|+.+.++.+...+ ...+.+|+||||+||..|+.+++++|++ |++ ++.+|..|+|||
T Consensus 13 ~~~~~~~l~~~~~g~~~~~~~~~~~~---------~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~-~~~~d~~g~t~L 81 (244)
T 3ui2_A 13 GEGAMEYLIEWKDGHSPSWVPSSYIA---------ADVVSEYETPWWTAARKADEQALSQLLE-DRD-VDAVDENGRTAL 81 (244)
T ss_dssp TTTEEEEEEEESSCCCCEEEEGGGSC---------HHHHHHHHHHHHHHHTTTCHHHHHHTTT-TCC-TTCBCTTSCBHH
T ss_pred CCCccHHHHHHHcCCCcccccccccc---------cccccCCCCHHHHHHHcCCHHHHHHHHc-CCC-CCCcCCCCCCHH
Confidence 45677888888888877665554432 2234679999999999999999999999 887 999999999999
Q ss_pred HHHHHCCCHHHHHHHHhcCCCCCCCCccccC-CCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccccCCCCcHHHHHHhC
Q 004365 123 FLAALHGHKDAFLCLHCLCASVDDGYTYSRR-NDGETILHCAISGDYFDLAFQIIHLYEKLVNSVNEKGVSPLHVLATK 200 (759)
Q Consensus 123 h~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~d-~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~ 200 (759)
|+||..|+.++|++|+++|++++ .+| ..|+||||+|+..|+.+++++|+++ |++++.+|..|.||||+|+..
T Consensus 82 ~~A~~~g~~~~v~~Ll~~ga~~~-----~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~d~~g~t~l~~A~~~ 154 (244)
T 3ui2_A 82 LFVAGLGSDKCVRLLAEAGADLD-----HRDMRGGLTALHMAAGYVRPEVVEALVEL-GADIEVEDERGLTALELAREI 154 (244)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCTT-----CCCSSSCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHcCCCCC-----cCCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHHH
Confidence 99999999999999999999998 777 8899999999999999999999995 888999999999999999864
No 95
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.90 E-value=1.9e-24 Score=196.93 Aligned_cols=130 Identities=21% Similarity=0.211 Sum_probs=116.7
Q ss_pred ccCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCcccCCCCCCCCcHHHHHHHCCCHHHHHHHHhcCCCCCCCCccccCC
Q 004365 75 EALTIGDERGSTPLHIAAGLGNVSMCKCIATADRKLIGERNHENETPFFLAALHGHKDAFLCLHCLCASVDDGYTYSRRN 154 (759)
Q Consensus 75 ~~~~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~d~ 154 (759)
+|+ .+|.+|+||||+||..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+++|++++ .+|.
T Consensus 2 ~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-----~~~~ 74 (137)
T 3c5r_A 2 IDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSD-PNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVN-----TTGY 74 (137)
T ss_dssp --C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-----CCCG
T ss_pred CCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccc-----CcCC
Confidence 455 6899999999999999999999999999998 99999999999999999999999999999999998 8999
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHhcCcCcccccCCCCcHHHHHHhCCCCCccCchHHHHHHHHhc
Q 004365 155 DGETILHCAISGDYFDLAFQIIHLYEKLVNSVNEKGVSPLHVLATKPNAFRSGSHLGRCIGTIYH 219 (759)
Q Consensus 155 ~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~~~~~~~~~~~~~~~~Ll~~ 219 (759)
.|.||||+|+..|+.+++++|++. +++++.+|..|.||||+|+..+ ..+++++|.+.
T Consensus 75 ~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~tpl~~A~~~~-------~~~~l~~l~~~ 131 (137)
T 3c5r_A 75 QNDSPLHDAAKNGHVDIVKLLLSY-GASRNAVNIFGLRPVDYTDDES-------MKSLLLLPEKN 131 (137)
T ss_dssp GGCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCGGGGCCCHH-------HHHHHSCC---
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHhhcc-------HHHHHhhcccc
Confidence 999999999999999999999995 8889999999999999999766 35565555443
No 96
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.90 E-value=2.2e-24 Score=192.41 Aligned_cols=114 Identities=22% Similarity=0.254 Sum_probs=94.9
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHHHhhhhcccccCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCcccCCCCCCCCcH
Q 004365 42 TRSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCIATADRKLIGERNHENETP 121 (759)
Q Consensus 42 d~~g~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~g~~~~~~~d~~G~Tp 121 (759)
+..|.||||+|+..|+.+++++|++.| .+++.+|..|+||||+||..|+.+++++|+++|++ ++.+|..|+||
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~tp 76 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAKG------EDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD-INAPDKHHITP 76 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHTT------CCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCTTSCCH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHcC------CCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCH
Confidence 456788888888888888888888876 67888888888888888888888888888888888 88888888888
Q ss_pred HHHHHHCCCHHHHHHHHhcCCCCCCCCccccCCCCCcHHHHHHHcC
Q 004365 122 FFLAALHGHKDAFLCLHCLCASVDDGYTYSRRNDGETILHCAISGD 167 (759)
Q Consensus 122 Lh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~d~~g~TpLh~A~~~g 167 (759)
||+|+..|+.+++++|+++|++++ .+|.+|.||||+|...+
T Consensus 77 L~~A~~~~~~~~v~~Ll~~ga~~~-----~~~~~g~t~l~~A~~~~ 117 (123)
T 3aaa_C 77 LLSAVYEGHVSCVKLLLSKGADKT-----VKGPDGLTAFEATDNQA 117 (123)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCTT-----CCCTTSCCHHHHCCCHH
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCC-----CcCCCCCCHHHHhCCHH
Confidence 888888888888888888888888 78888888888884433
No 97
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.90 E-value=1.8e-23 Score=216.97 Aligned_cols=139 Identities=17% Similarity=0.089 Sum_probs=122.6
Q ss_pred CChHHHHHHHcCCHHHHHHHHHHhhhhcccccCcc------CCCCCChHHHHHHHc---CCHHHHHHHHHcCCcccCCCC
Q 004365 45 GGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTI------GDERGSTPLHIAAGL---GNVSMCKCIATADRKLIGERN 115 (759)
Q Consensus 45 g~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~------~d~~G~TpLh~Aa~~---g~~eiv~~Ll~~g~~~~~~~d 115 (759)
+.++||.|+..|+.+.|+.|++.| .+++. .|..|+||||+||.. |+.+++++|+++|++ ++.+|
T Consensus 151 ~~~~L~~A~~~g~~~~v~~ll~~g------~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad-vn~~d 223 (301)
T 2b0o_E 151 EPQRLWTAICNRDLLSVLEAFANG------QDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH-LDAKA 223 (301)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHTT------CCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSC-TTCCC
T ss_pred hHHHHhhhhhccCHHHHHHHHhcC------CcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCC-CCCCC
Confidence 346799999999999999999987 55665 689999999999997 899999999999998 99999
Q ss_pred CCCCcHHHHHHHCCCHHHHHHHHhcCCCCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccccCCCCcHHH
Q 004365 116 HENETPFFLAALHGHKDAFLCLHCLCASVDDGYTYSRRNDGETILHCAISGDYFDLAFQIIHLYEKLVNSVNEKGVSPLH 195 (759)
Q Consensus 116 ~~G~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh 195 (759)
..|+||||+|+..|+.++|++|+++|++++ .+|.+|.||||+|+..|+.+++++|++.+ ++ .|.||||
T Consensus 224 ~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~-----~~d~~G~TpL~~A~~~~~~~iv~~Ll~~g-a~------~g~tpLh 291 (301)
T 2b0o_E 224 ADGNTALHYAALYNQPDCLKLLLKGRALVG-----TVNEAGETALDIARKKHHKECEELLEQAQ-AG------TFAFPLH 291 (301)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHTTCCCS-----CCCTTSCCHHHHHHHHTCHHHHHHHHHHH-HH------TTSSCCC
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-----CcCCCCCCHHHHHHHcCCHHHHHHHHHhc-CC------CCCChhH
Confidence 999999999999999999999999999999 89999999999999999999999999964 32 6899999
Q ss_pred HHHhCCC
Q 004365 196 VLATKPN 202 (759)
Q Consensus 196 ~Aa~~~~ 202 (759)
+|+..|.
T Consensus 292 ~A~~~g~ 298 (301)
T 2b0o_E 292 VDYSWVI 298 (301)
T ss_dssp -------
T ss_pred HHHhcCC
Confidence 9999874
No 98
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.90 E-value=1.4e-24 Score=215.62 Aligned_cols=138 Identities=19% Similarity=0.151 Sum_probs=116.7
Q ss_pred ccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhcccccCccCCCCCChHHHHHHHcCCHHHHHHHHHc-CCcccCCCCCCC
Q 004365 40 KITRSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCIATA-DRKLIGERNHEN 118 (759)
Q Consensus 40 ~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~-g~~~~~~~d~~G 118 (759)
..+.+|+||||+||..|+.++|++|++.| ++++.+|..|+||||+||..|+.+++++|+++ |++ ++.+|..|
T Consensus 68 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~-~~~~d~~g 140 (222)
T 3ehr_A 68 EQAESIDNPLHEAAKRGNLSWLRECLDNR------VGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIE-LNQQNKLG 140 (222)
T ss_dssp HHEEEESCHHHHHHHHTCHHHHHHHHHTT------CCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCC-CCCCCTTS
T ss_pred ccccccccccccccccCcHHHHHHHHhCC------CCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCC-ccccCCCC
Confidence 34677899999999999999999999986 78999999999999999999999999999999 777 99999999
Q ss_pred CcHHHHHHHCCCHHHHHHHHhcCCCCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccccCCC
Q 004365 119 ETPFFLAALHGHKDAFLCLHCLCASVDDGYTYSRRNDGETILHCAISGDYFDLAFQIIHLYEKLVNSVNEKG 190 (759)
Q Consensus 119 ~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G 190 (759)
+||||+|+..|+.++|++|+++|++++ .+|.+|.||||+|+..|+.++++.|++. +++.+..|..|
T Consensus 141 ~tpL~~A~~~~~~~~v~~Ll~~ga~~~-----~~~~~g~t~l~~A~~~~~~~~l~~l~~~-~~~~~~~~~~~ 206 (222)
T 3ehr_A 141 DTALHAAAWKGYADIVQLLLAKGARTD-----LRNIEKKLAFDMATNAACASLLKKKQGT-DAVRTLSNAED 206 (222)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHHTCCSC-----CCCTTSCCHHHHCCSHHHHHHHC-----------------
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCc-----cccCCCCCHHHHhcchhHHHHHHHHhcc-chhhhccchhh
Confidence 999999999999999999999999999 8999999999999999999999999985 55566665554
No 99
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.90 E-value=7.3e-24 Score=203.47 Aligned_cols=114 Identities=19% Similarity=0.187 Sum_probs=107.6
Q ss_pred CCCCCChHHHHHHHcCCHHHHHHHHHcCCcccCCCCCCCCcHHHHHHHCCCHHHHHHHHhcCCCCCCCCccccC-CCCCc
Q 004365 80 GDERGSTPLHIAAGLGNVSMCKCIATADRKLIGERNHENETPFFLAALHGHKDAFLCLHCLCASVDDGYTYSRR-NDGET 158 (759)
Q Consensus 80 ~d~~G~TpLh~Aa~~g~~eiv~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~d-~~g~T 158 (759)
.|.+|+||||+||..|+.+++++|++ |++ ++.+|..|+||||+|+..|+.+++++|+++|++++ .+| .+|+|
T Consensus 40 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-----~~~~~~g~t 112 (183)
T 3deo_A 40 VVSEYETPWWTAARKADEQALSQLLE-DRD-VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLD-----HRDMRGGLT 112 (183)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHTT-TSC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-----CCCSSSSCC
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHh-cCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-----cCCCCCCCC
Confidence 35689999999999999999999999 887 99999999999999999999999999999999998 777 88999
Q ss_pred HHHHHHHcCCHHHHHHHHHhcCcCcccccCCCCcHHHHHHhCC
Q 004365 159 ILHCAISGDYFDLAFQIIHLYEKLVNSVNEKGVSPLHVLATKP 201 (759)
Q Consensus 159 pLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~~ 201 (759)
|||+|+..|+.+++++|+++ +++++.+|.+|.||||+|++.+
T Consensus 113 pL~~A~~~~~~~~v~~Ll~~-ga~~~~~d~~g~tpl~~A~~~~ 154 (183)
T 3deo_A 113 ALHMAAGYVRPEVVEALVEL-GADIEVEDERGLTALELAREIL 154 (183)
T ss_dssp HHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTSCCHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHc-CCCCcCCCCCCCCHHHHHHHhc
Confidence 99999999999999999995 7889999999999999999754
No 100
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.89 E-value=3.9e-23 Score=184.32 Aligned_cols=112 Identities=12% Similarity=0.073 Sum_probs=105.4
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHHcCCcccCCCCCCCCcHHHHHHHCCCHHHHHHHHhcCCCCCCCCccccCCCCCcHH
Q 004365 81 DERGSTPLHIAAGLGNVSMCKCIATADRKLIGERNHENETPFFLAALHGHKDAFLCLHCLCASVDDGYTYSRRNDGETIL 160 (759)
Q Consensus 81 d~~G~TpLh~Aa~~g~~eiv~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~d~~g~TpL 160 (759)
+..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+++|++++ .+|..|+|||
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-----~~d~~g~tpL 77 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAKGED-VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN-----APDKHHITPL 77 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHTTCC-TTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTT-----CCCTTSCCHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHcCCC-cCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC-----cCCCCCCCHH
Confidence 57899999999999999999999999998 99999999999999999999999999999999999 8999999999
Q ss_pred HHHHHcCCHHHHHHHHHhcCcCcccccCCCCcHHHHHHh
Q 004365 161 HCAISGDYFDLAFQIIHLYEKLVNSVNEKGVSPLHVLAT 199 (759)
Q Consensus 161 h~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~Aa~ 199 (759)
|+|+..|+.+++++|+++ +++++.+|.+|.||||+|+.
T Consensus 78 ~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~ 115 (123)
T 3aaa_C 78 LSAVYEGHVSCVKLLLSK-GADKTVKGPDGLTAFEATDN 115 (123)
T ss_dssp HHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHCCC
T ss_pred HHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHhCC
Confidence 999999999999999995 78899999999999999954
No 101
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.89 E-value=3.1e-23 Score=215.07 Aligned_cols=139 Identities=19% Similarity=0.137 Sum_probs=122.7
Q ss_pred cHHHHHHHHcCCHHHHHHHHhhCcCccccc------cCCCCChHHHHHHHc---CCHHHHHHHHHHhhhhcccccCccCC
Q 004365 11 KKDLFKRAMKGEWKEVVKNYEKDERIHKVK------ITRSGGTALHIAVSD---GQEEIVEDLVRIIKEKQQLEALTIGD 81 (759)
Q Consensus 11 ~~~L~~aa~~g~~~~v~~lL~~~~~~~~~~------~d~~g~TpLh~Aa~~---g~~~iv~~Ll~~g~~~~~~~~~~~~d 81 (759)
.++|+.|+..|+.+.++.++.. +.+++. .+..|+||||+||.. |+.++|++|+++| +++|.+|
T Consensus 152 ~~~L~~A~~~g~~~~v~~ll~~--g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~g------advn~~d 223 (301)
T 2b0o_E 152 PQRLWTAICNRDLLSVLEAFAN--GQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNG------GHLDAKA 223 (301)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHT--TCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHS------SCTTCCC
T ss_pred HHHHhhhhhccCHHHHHHHHhc--CCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcC------CCCCCCC
Confidence 4679999999999999999977 677776 689999999999997 8999999999997 7899999
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHHcCCcccCCCCCCCCcHHHHHHHCCCHHHHHHHHhcCCCCCCCCccccCCCCCcHHH
Q 004365 82 ERGSTPLHIAAGLGNVSMCKCIATADRKLIGERNHENETPFFLAALHGHKDAFLCLHCLCASVDDGYTYSRRNDGETILH 161 (759)
Q Consensus 82 ~~G~TpLh~Aa~~g~~eiv~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~d~~g~TpLh 161 (759)
.+|+||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+++|++ .|.||||
T Consensus 224 ~~G~TpLh~A~~~g~~~~v~~Ll~~gad-~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~-----------~g~tpLh 291 (301)
T 2b0o_E 224 ADGNTALHYAALYNQPDCLKLLLKGRAL-VGTVNEAGETALDIARKKHHKECEELLEQAQAG-----------TFAFPLH 291 (301)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHTTCC-CSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH-----------TTSSCCC
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC-----------CCCChhH
Confidence 9999999999999999999999999999 999999999999999999999999999999874 3789999
Q ss_pred HHHHcCCH
Q 004365 162 CAISGDYF 169 (759)
Q Consensus 162 ~A~~~g~~ 169 (759)
+|+..|+.
T Consensus 292 ~A~~~g~~ 299 (301)
T 2b0o_E 292 VDYSWVIS 299 (301)
T ss_dssp --------
T ss_pred HHHhcCCc
Confidence 99998874
No 102
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.88 E-value=3.4e-23 Score=205.59 Aligned_cols=174 Identities=16% Similarity=0.101 Sum_probs=131.6
Q ss_pred cCCCCChHHHHHHHcCCHHHHHHHHHHhh----h-----hcccccCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCccc
Q 004365 41 ITRSGGTALHIAVSDGQEEIVEDLVRIIK----E-----KQQLEALTIGDERGSTPLHIAAGLGNVSMCKCIATADRKLI 111 (759)
Q Consensus 41 ~d~~g~TpLh~Aa~~g~~~iv~~Ll~~g~----~-----~~~~~~~~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~g~~~~ 111 (759)
.+.+++++.+++.+.|+...+..+.+.+- . .-....++..|..|+||||+||..|+.+++++|++.|++ +
T Consensus 21 ~d~~~~~~~el~~~~Gd~~~v~~~~~~~w~~~~~~g~~gl~p~~~v~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~ 99 (222)
T 3ehr_A 21 YTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVG-V 99 (222)
T ss_dssp SCCCCSSTTBCCCCTTCEEEEEECCSSSEEEEEETTEEEEEEHHHHHHHEEEESCHHHHHHHHTCHHHHHHHHHTTCC-T
T ss_pred CCcCCCCCCcccccCCCEEEEeccccchhHhcccCCcceeechhhccccccccccccccccccCcHHHHHHHHhCCCC-c
Confidence 35566677777766665433322211100 0 000112334577899999999999999999999999998 9
Q ss_pred CCCCCCCCcHHHHHHHCCCHHHHHHHHhc-CCCCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccccCCC
Q 004365 112 GERNHENETPFFLAALHGHKDAFLCLHCL-CASVDDGYTYSRRNDGETILHCAISGDYFDLAFQIIHLYEKLVNSVNEKG 190 (759)
Q Consensus 112 ~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~-ga~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G 190 (759)
+.+|..|+||||+||..|+.++|++|+++ |++++ .+|.+|+||||+|+..|+.+++++|+++ |++++.+|.+|
T Consensus 100 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~-----~~d~~g~tpL~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g 173 (222)
T 3ehr_A 100 NGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELN-----QQNKLGDTALHAAAWKGYADIVQLLLAK-GARTDLRNIEK 173 (222)
T ss_dssp TCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCC-----CCCTTSCCHHHHHHHHTCHHHHHHHHHH-TCCSCCCCTTS
T ss_pred cccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCcc-----ccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCccccCCC
Confidence 99999999999999999999999999999 99998 8999999999999999999999999996 78899999999
Q ss_pred CcHHHHHHhCCCCCccCchHHHHHHHHhcCcCccchhh
Q 004365 191 VSPLHVLATKPNAFRSGSHLGRCIGTIYHCIFVDKLQE 228 (759)
Q Consensus 191 ~TpLh~Aa~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~ 228 (759)
.||||+|+..+ ..++++.|+..|+..+..+.
T Consensus 174 ~t~l~~A~~~~-------~~~~l~~l~~~~~~~~~~~~ 204 (222)
T 3ehr_A 174 KLAFDMATNAA-------CASLLKKKQGTDAVRTLSNA 204 (222)
T ss_dssp CCHHHHCCSHH-------HHHHHC--------------
T ss_pred CCHHHHhcchh-------HHHHHHHHhccchhhhccch
Confidence 99999999887 59999999999998877664
No 103
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.87 E-value=2.8e-22 Score=212.54 Aligned_cols=148 Identities=14% Similarity=0.145 Sum_probs=119.4
Q ss_pred CCCCChHHHHHHHc-CCHHHHHHHHHHhhhhcccccCccCC--CCCChHHHHHHHcCCHHHHHHHHHcCCcccCCCCCCC
Q 004365 42 TRSGGTALHIAVSD-GQEEIVEDLVRIIKEKQQLEALTIGD--ERGSTPLHIAAGLGNVSMCKCIATADRKLIGERNHEN 118 (759)
Q Consensus 42 d~~g~TpLh~Aa~~-g~~~iv~~Ll~~g~~~~~~~~~~~~d--~~G~TpLh~Aa~~g~~eiv~~Ll~~g~~~~~~~d~~G 118 (759)
+..+.||||.|+.. |+.++++.|+++| ++++..| ..|+||||+||..|+.+++++|+++|++ ++.+|..|
T Consensus 196 ~~~~~t~L~~Aa~~~g~~~~v~~LL~~G------advn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gad-vn~~d~~G 268 (368)
T 3jue_A 196 SLHPGALLFRASGHPPSLPTMADALAHG------ADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGAN-VNQADSAG 268 (368)
T ss_dssp -CCHHHHHHHHTSSSCCHHHHHHHHHTT------CCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTS
T ss_pred cCCCCcHHHHHHHccCCHHHHHHHHHcC------CCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCCCCCCC
Confidence 34567899999999 9999999999987 7788888 8999999999999999999999999999 99999999
Q ss_pred CcHHHHHHHCCCHHHHHHHHhcCCCCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCc--CcccccCCCCcHHHH
Q 004365 119 ETPFFLAALHGHKDAFLCLHCLCASVDDGYTYSRRNDGETILHCAISGDYFDLAFQIIHLYEK--LVNSVNEKGVSPLHV 196 (759)
Q Consensus 119 ~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~--~~~~~d~~G~TpLh~ 196 (759)
+||||+|+..|+.++|++|+++|++++ .+|.+|.||||+|+..|+.+++++|++.... +....+..+.|++++
T Consensus 269 ~TpLh~A~~~g~~~~v~~LL~~Gad~~-----~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i 343 (368)
T 3jue_A 269 RGPLHHATILGHTGLACLFLKRGADLG-----ARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDI 343 (368)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCTT-----CCCTTSCCHHHHHHHTTCHHHHHHHHHHHC------------------
T ss_pred CCHHHHHHHcCcHHHHHHHHHCcCCCC-----CcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHH
Confidence 999999999999999999999999999 8999999999999999999999999986432 344566778999998
Q ss_pred HHhCC
Q 004365 197 LATKP 201 (759)
Q Consensus 197 Aa~~~ 201 (759)
+....
T Consensus 344 ~~~~~ 348 (368)
T 3jue_A 344 FRDFS 348 (368)
T ss_dssp -----
T ss_pred HHHHH
Confidence 87654
No 104
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.87 E-value=6e-22 Score=166.86 Aligned_cols=93 Identities=31% Similarity=0.467 Sum_probs=66.2
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHHhhhhcccccCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCcccCCCCCCCCcHHH
Q 004365 44 SGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCIATADRKLIGERNHENETPFF 123 (759)
Q Consensus 44 ~g~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~g~~~~~~~d~~G~TpLh 123 (759)
+|+||||+||..|+.+++++|+++| ++++.+|..|+||||+|+..|+.+++++|+++|++ ++.+|..|+||||
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g------~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~t~l~ 73 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAG------ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLH 73 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTT------CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcC------CCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHH
Confidence 3677777777777777777777765 56677777777777777777777777777777776 6777777777777
Q ss_pred HHHHCCCHHHHHHHHhcCCC
Q 004365 124 LAALHGHKDAFLCLHCLCAS 143 (759)
Q Consensus 124 ~Aa~~g~~~iv~~Ll~~ga~ 143 (759)
+|+..|+.+++++|+++|++
T Consensus 74 ~A~~~~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 74 LAARNGHLEVVKLLLEAGAY 93 (93)
T ss_dssp HHHHTTCHHHHHHHHHTTCC
T ss_pred HHHHcCCHHHHHHHHHcCCC
Confidence 77777777777777777663
No 105
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.86 E-value=2.5e-21 Score=198.47 Aligned_cols=129 Identities=16% Similarity=0.078 Sum_probs=119.8
Q ss_pred ChHHHHHHHcCCHHHHHHHHHHhhhhcccccCccCCCCCChHHHHHHHc---CCHHHHHHHHHcCCcccCCCCCCCCcHH
Q 004365 46 GTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGL---GNVSMCKCIATADRKLIGERNHENETPF 122 (759)
Q Consensus 46 ~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~d~~G~TpLh~Aa~~---g~~eiv~~Ll~~g~~~~~~~d~~G~TpL 122 (759)
.++||.|+..|+.+.++.+++.|.+......++..|..|+||||+||.. |+.+++++|+++|++ ++.+|..|+|||
T Consensus 131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~-in~~d~~g~TpL 209 (278)
T 1dcq_A 131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN-LDKQTGKGSTAL 209 (278)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC-TTCCCTTCCCHH
T ss_pred hhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCC-ccccCCCCCCHH
Confidence 3689999999999999999999865544444777899999999999999 999999999999999 999999999999
Q ss_pred HHHHHCCCHHHHHHHHhcCCCCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcC
Q 004365 123 FLAALHGHKDAFLCLHCLCASVDDGYTYSRRNDGETILHCAISGDYFDLAFQIIHLYE 180 (759)
Q Consensus 123 h~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~ 180 (759)
|+|+..|+.++|++|+++|++++ .+|.+|.||||+|+..|+.+++++|++.+.
T Consensus 210 h~A~~~g~~~~v~~Ll~~gad~~-----~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga 262 (278)
T 1dcq_A 210 HYCCLTDNAECLKLLLRGKASIE-----IANESGETPLDIAKRLKHEHCEELLTQALS 262 (278)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCTT-----CCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHcCCCCC-----CccCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 99999999999999999999999 899999999999999999999999999644
No 106
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.86 E-value=1.8e-21 Score=217.01 Aligned_cols=136 Identities=18% Similarity=0.113 Sum_probs=116.5
Q ss_pred CChHHHHHHHcCCHHHHHHHHHHhhhhcccccCccC------CCCCChHHHHHHH---cCCHHHHHHHHHcCCcccCCCC
Q 004365 45 GGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIG------DERGSTPLHIAAG---LGNVSMCKCIATADRKLIGERN 115 (759)
Q Consensus 45 g~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~------d~~G~TpLh~Aa~---~g~~eiv~~Ll~~g~~~~~~~d 115 (759)
..+.||.|+..|+.+.|+.|++.| +++|.. |..|+||||+||. .|+.+++++|+++|++ +|.+|
T Consensus 132 ~~~~L~~A~~~g~~~~v~~ll~~g------~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~-vn~~d 204 (497)
T 3lvq_E 132 EPQRLWTAICNRDLLSVLEAFANG------QDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH-LDAKA 204 (497)
T ss_dssp CHHHHHHHHHHTCHHHHHHHHHTT------CCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCC-TTCCC
T ss_pred cHHHHHHHHhccCHHHHHHHHhhc------ccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCC-CCccC
Confidence 347899999999999999999998 555555 8999999999977 9999999999999999 99999
Q ss_pred CCCCcHHHHHHHCCCHHHHHHHHhcCCCCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCcccccCCCCcHHH
Q 004365 116 HENETPFFLAALHGHKDAFLCLHCLCASVDDGYTYSRRNDGETILHCAISGDYFDLAFQIIHLYEKLVNSVNEKGVSPLH 195 (759)
Q Consensus 116 ~~G~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh 195 (759)
..|+||||+||..|+.++|++|+++|++++ .+|.+|.||||+|+..|+.+++++|++. |++++. ||+|
T Consensus 205 ~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~-----~~d~~g~tpl~~A~~~~~~~~~~~Ll~~-ga~~~~------~~~h 272 (497)
T 3lvq_E 205 ADGNTALHYAALYNQPDCLKLLLKGRALVG-----TVNEAGETALDIARKKHHKECEELLEQA-QAGTFA------FPLH 272 (497)
T ss_dssp SSSCCHHHHHTTTTCHHHHHHHHHTCCCCS-----CCCTTCCCHHHHHHHTTCHHHHHHHHHT-CC--------------
T ss_pred CCCCcHHHHHHHcCCHHHHHHHHHcCCCCC-----CcCCCCCCHHHHHHHcCCHHHHHHHHHh-CCCCCC------Ccce
Confidence 999999999999999999999999999999 8999999999999999999999999995 676766 5777
Q ss_pred HHHh
Q 004365 196 VLAT 199 (759)
Q Consensus 196 ~Aa~ 199 (759)
.+..
T Consensus 273 ~~~~ 276 (497)
T 3lvq_E 273 VDYS 276 (497)
T ss_dssp ----
T ss_pred eecc
Confidence 7654
No 107
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.85 E-value=6e-21 Score=160.72 Aligned_cols=90 Identities=28% Similarity=0.446 Sum_probs=86.3
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHcCCcccCCCCCCCCcHHHHHHHCCCHHHHHHHHhcCCCCCCCCccccCCCCCcHHHH
Q 004365 83 RGSTPLHIAAGLGNVSMCKCIATADRKLIGERNHENETPFFLAALHGHKDAFLCLHCLCASVDDGYTYSRRNDGETILHC 162 (759)
Q Consensus 83 ~G~TpLh~Aa~~g~~eiv~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~d~~g~TpLh~ 162 (759)
+|+||||+||..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+++|++++ .+|.+|+||||+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-----~~d~~g~t~l~~ 74 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN-----AKDKNGRTPLHL 74 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-----CCCTTSCCHHHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-----ccCCCCCCHHHH
Confidence 589999999999999999999999999 99999999999999999999999999999999999 899999999999
Q ss_pred HHHcCCHHHHHHHHHh
Q 004365 163 AISGDYFDLAFQIIHL 178 (759)
Q Consensus 163 A~~~g~~~iv~~Ll~~ 178 (759)
|+..|+.+++++|+++
T Consensus 75 A~~~~~~~~~~~Ll~~ 90 (93)
T 1n0q_A 75 AARNGHLEVVKLLLEA 90 (93)
T ss_dssp HHHTTCHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHc
Confidence 9999999999999995
No 108
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.85 E-value=4.4e-21 Score=213.95 Aligned_cols=135 Identities=20% Similarity=0.176 Sum_probs=117.3
Q ss_pred cHHHHHHHHcCCHHHHHHHHhhCcCcccccc------CCCCChHHHHHHH---cCCHHHHHHHHHHhhhhcccccCccCC
Q 004365 11 KKDLFKRAMKGEWKEVVKNYEKDERIHKVKI------TRSGGTALHIAVS---DGQEEIVEDLVRIIKEKQQLEALTIGD 81 (759)
Q Consensus 11 ~~~L~~aa~~g~~~~v~~lL~~~~~~~~~~~------d~~g~TpLh~Aa~---~g~~~iv~~Ll~~g~~~~~~~~~~~~d 81 (759)
.+.||.|+..|+.+.|+.+|.. +++++.. |..|+||||+||. .|+.++|++|+++| +++|.+|
T Consensus 133 ~~~L~~A~~~g~~~~v~~ll~~--g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~g------a~vn~~d 204 (497)
T 3lvq_E 133 PQRLWTAICNRDLLSVLEAFAN--GQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNG------GHLDAKA 204 (497)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHT--TCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHS------CCTTCCC
T ss_pred HHHHHHHHhccCHHHHHHHHhh--cccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcC------CCCCccC
Confidence 4679999999999999999998 7787766 8899999999977 99999999999997 8899999
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHHcCCcccCCCCCCCCcHHHHHHHCCCHHHHHHHHhcCCCCCCCCccccCCCCCcHHH
Q 004365 82 ERGSTPLHIAAGLGNVSMCKCIATADRKLIGERNHENETPFFLAALHGHKDAFLCLHCLCASVDDGYTYSRRNDGETILH 161 (759)
Q Consensus 82 ~~G~TpLh~Aa~~g~~eiv~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~d~~g~TpLh 161 (759)
.+|+||||+||..|+.++|++|+++|++ ++.+|..|+||||+|+..|+.+++++|+++|++++ . ||+|
T Consensus 205 ~~g~TpLh~A~~~g~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~-----~------~~~h 272 (497)
T 3lvq_E 205 ADGNTALHYAALYNQPDCLKLLLKGRAL-VGTVNEAGETALDIARKKHHKECEELLEQAQAGTF-----A------FPLH 272 (497)
T ss_dssp SSSCCHHHHHTTTTCHHHHHHHHHTCCC-CSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC-------------------
T ss_pred CCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCC-----C------Ccce
Confidence 9999999999999999999999999999 99999999999999999999999999999999987 3 6888
Q ss_pred HHHH
Q 004365 162 CAIS 165 (759)
Q Consensus 162 ~A~~ 165 (759)
.+..
T Consensus 273 ~~~~ 276 (497)
T 3lvq_E 273 VDYS 276 (497)
T ss_dssp ----
T ss_pred eecc
Confidence 7654
No 109
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.84 E-value=9.2e-21 Score=194.21 Aligned_cols=126 Identities=22% Similarity=0.187 Sum_probs=117.2
Q ss_pred cHHHHHHHHcCCHHHHHHHHhhCcCcc------ccccCCCCChHHHHHHHc---CCHHHHHHHHHHhhhhcccccCccCC
Q 004365 11 KKDLFKRAMKGEWKEVVKNYEKDERIH------KVKITRSGGTALHIAVSD---GQEEIVEDLVRIIKEKQQLEALTIGD 81 (759)
Q Consensus 11 ~~~L~~aa~~g~~~~v~~lL~~~~~~~------~~~~d~~g~TpLh~Aa~~---g~~~iv~~Ll~~g~~~~~~~~~~~~d 81 (759)
..+|+.|+..|+.+.+..++.. +.+ ++..+..|+||||+||.. |+.++|++|+++| +++|.+|
T Consensus 131 l~~l~~a~~~~d~~~~~~ll~~--g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~g------a~in~~d 202 (278)
T 1dcq_A 131 LHSLCEAVKTRDIFGLLQAYAD--GVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNS------GNLDKQT 202 (278)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHT--TCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHC------SCTTCCC
T ss_pred hhhhhhHhhhcccHHHHHHHHh--hcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCC------CCccccC
Confidence 5789999999999999999988 444 445588999999999999 8999999999997 7899999
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHHcCCcccCCCCCCCCcHHHHHHHCCCHHHHHHHHhcCCCCC
Q 004365 82 ERGSTPLHIAAGLGNVSMCKCIATADRKLIGERNHENETPFFLAALHGHKDAFLCLHCLCASVD 145 (759)
Q Consensus 82 ~~G~TpLh~Aa~~g~~eiv~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~ga~~~ 145 (759)
.+|+||||+|+..|+.++|++|+++|++ ++.+|..|+||||+|+..|+.+++++|+++|++..
T Consensus 203 ~~g~TpLh~A~~~g~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~ 265 (278)
T 1dcq_A 203 GKGSTALHYCCLTDNAECLKLLLRGKAS-IEIANESGETPLDIAKRLKHEHCEELLTQALSGRF 265 (278)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTCC
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 9999999999999999999999999999 99999999999999999999999999999998654
No 110
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.84 E-value=1.3e-21 Score=172.15 Aligned_cols=107 Identities=27% Similarity=0.326 Sum_probs=58.8
Q ss_pred CCCCCChHHHHHHHcCCHHHHHHHHHcCCcccCCCCCCCCcHHHHHHHCCCHHHHHHHHhcCCCCCCCCccccCCCCCcH
Q 004365 80 GDERGSTPLHIAAGLGNVSMCKCIATADRKLIGERNHENETPFFLAALHGHKDAFLCLHCLCASVDDGYTYSRRNDGETI 159 (759)
Q Consensus 80 ~d~~G~TpLh~Aa~~g~~eiv~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~d~~g~Tp 159 (759)
+|.+|+||||+||..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+++|++++ .+|..|.||
T Consensus 5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-----~~d~~g~tp 78 (115)
T 2l6b_A 5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVN-----ARSKDGNTP 78 (115)
T ss_dssp CSCSSCCHHHHHHHHTCHHHHHHHTTTTCC-SSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTT-----CCCTTCCCT
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCc-----ccCCCCCCH
Confidence 455555555555555555555555555555 55555555555555555555555555555555555 455555555
Q ss_pred HHHHHHcCCHHHHHHHHHhcCcCcccccCCCCcH
Q 004365 160 LHCAISGDYFDLAFQIIHLYEKLVNSVNEKGVSP 193 (759)
Q Consensus 160 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~Tp 193 (759)
||+|+..|+.+++++|++ .|++++.++..|.||
T Consensus 79 l~~A~~~~~~~~~~~Ll~-~ga~~n~~~~~~~~~ 111 (115)
T 2l6b_A 79 EHLAKKNGHHEIVKLLDA-KGADVNARSWGSSHH 111 (115)
T ss_dssp THHHHTTTCHHHHHHHHT-TSSSHHHHSCCCC--
T ss_pred HHHHHHCCCHHHHHHHHH-cCCCCCcCCcccccc
Confidence 555555555555555555 345555555555554
No 111
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.84 E-value=4e-21 Score=168.93 Aligned_cols=109 Identities=27% Similarity=0.375 Sum_probs=102.3
Q ss_pred ccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhcccccCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCcccCCCCCCCC
Q 004365 40 KITRSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCIATADRKLIGERNHENE 119 (759)
Q Consensus 40 ~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~g~~~~~~~d~~G~ 119 (759)
.+|.+|+||||+||..|+.+++++|+++| ++++.+|..|+||||+|+..|+.+++++|+++|++ ++.+|..|+
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g------~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~d~~g~ 76 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKG------ADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD-VNARSKDGN 76 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTT------CCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCC-TTCCCTTCC
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcC------CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-CcccCCCCC
Confidence 57999999999999999999999999987 78999999999999999999999999999999999 999999999
Q ss_pred cHHHHHHHCCCHHHHHHHHhcCCCCCCCCccccCCCCCcHH
Q 004365 120 TPFFLAALHGHKDAFLCLHCLCASVDDGYTYSRRNDGETIL 160 (759)
Q Consensus 120 TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~d~~g~TpL 160 (759)
||||+|+..|+.+++++|+++|++++ .++..|.||-
T Consensus 77 tpl~~A~~~~~~~~~~~Ll~~ga~~n-----~~~~~~~~~~ 112 (115)
T 2l6b_A 77 TPEHLAKKNGHHEIVKLLDAKGADVN-----ARSWGSSHHH 112 (115)
T ss_dssp CTTHHHHTTTCHHHHHHHHTTSSSHH-----HHSCCCC---
T ss_pred CHHHHHHHCCCHHHHHHHHHcCCCCC-----cCCccccccc
Confidence 99999999999999999999999998 8999999873
No 112
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.83 E-value=2.2e-20 Score=197.91 Aligned_cols=146 Identities=17% Similarity=0.141 Sum_probs=116.6
Q ss_pred cHHHHHHHHc-CCHHHHHHHHhhCcCccccccC--CCCChHHHHHHHcCCHHHHHHHHHHhhhhcccccCccCCCCCChH
Q 004365 11 KKDLFKRAMK-GEWKEVVKNYEKDERIHKVKIT--RSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTP 87 (759)
Q Consensus 11 ~~~L~~aa~~-g~~~~v~~lL~~~~~~~~~~~d--~~g~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~d~~G~Tp 87 (759)
.++||.|+.. |+.+.+..+|.. +++++..+ .+|+||||+||..|+.++|++|+++| +++|.+|..|+||
T Consensus 200 ~t~L~~Aa~~~g~~~~v~~LL~~--Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~G------advn~~d~~G~Tp 271 (368)
T 3jue_A 200 GALLFRASGHPPSLPTMADALAH--GADVNWVNGGQDNATPLIQATAANSLLACEFLLQNG------ANVNQADSAGRGP 271 (368)
T ss_dssp HHHHHHHTSSSCCHHHHHHHHHT--TCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTT------CCTTCCCTTSCCH
T ss_pred CcHHHHHHHccCCHHHHHHHHHc--CCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcC------CCCCCCCCCCCCH
Confidence 4689999999 999999999987 78888888 89999999999999999999999987 8899999999999
Q ss_pred HHHHHHcCCHHHHHHHHHcCCcccCCCCCCCCcHHHHHHHCCCHHHHHHHHhcCCCCCCCCccccCCCCCcHHHHHHHcC
Q 004365 88 LHIAAGLGNVSMCKCIATADRKLIGERNHENETPFFLAALHGHKDAFLCLHCLCASVDDGYTYSRRNDGETILHCAISGD 167 (759)
Q Consensus 88 Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~d~~g~TpLh~A~~~g 167 (759)
||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|++.+.... .....+..+.|+|+.+....
T Consensus 272 Lh~A~~~g~~~~v~~LL~~Gad-~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~--~~~~~~~~~~t~l~i~~~~~ 348 (368)
T 3jue_A 272 LHHATILGHTGLACLFLKRGAD-LGARDSEGRDPLTIAMETANADIVTLLRLAKMREA--EAAQGQAGDETYLDIFRDFS 348 (368)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-------------------------
T ss_pred HHHHHHcCcHHHHHHHHHCcCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcc--cccccCCCCCCHHHHHHHHH
Confidence 9999999999999999999999 99999999999999999999999999998875432 22245677888888776543
No 113
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.76 E-value=1.6e-18 Score=150.77 Aligned_cols=93 Identities=22% Similarity=0.206 Sum_probs=61.8
Q ss_pred CccCCCCCChHHHHHHHcCCHHHHHHHHHcCCcccCCCCCCCCcHHHHHHHCCCHHHHHHHHhcCCCCCCCCccccCCCC
Q 004365 77 LTIGDERGSTPLHIAAGLGNVSMCKCIATADRKLIGERNHENETPFFLAALHGHKDAFLCLHCLCASVDDGYTYSRRNDG 156 (759)
Q Consensus 77 ~~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~ga~~~~~~~~~~d~~g 156 (759)
+...|.+|+||||+||..|+.+++++|+++|++ ++.+|..|+||||+||..|+.+++++|+++|++++ .+|..|
T Consensus 17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~-----~~d~~g 90 (110)
T 2zgd_A 17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGAD-VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVX-----AQDKFG 90 (110)
T ss_dssp -----CCHHHHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-----CCCTTS
T ss_pred ccccCCccchHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-----ccccCC
Confidence 444566677777777777777777777777666 66667777777777777777777777777777666 666677
Q ss_pred CcHHHHHHHcCCHHHHHHH
Q 004365 157 ETILHCAISGDYFDLAFQI 175 (759)
Q Consensus 157 ~TpLh~A~~~g~~~iv~~L 175 (759)
+||||+|+..|+.+++++|
T Consensus 91 ~tpl~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 91 KTAFDISIDNGNEDLAEIL 109 (110)
T ss_dssp CCHHHHHHHHTCHHHHHHH
T ss_pred CcHHHHHHHcCCHHHHHHh
Confidence 7777777777777776655
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.76 E-value=1.5e-18 Score=150.91 Aligned_cols=94 Identities=26% Similarity=0.320 Sum_probs=85.5
Q ss_pred cccccCCCCChHHHHHHHcCCHHHHHHHHHHhhhhcccccCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCcccCCCCC
Q 004365 37 HKVKITRSGGTALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLHIAAGLGNVSMCKCIATADRKLIGERNH 116 (759)
Q Consensus 37 ~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~g~~~~~~~d~ 116 (759)
.....|.+|+||||+||..|+.+++++|+++| ++++.+|..|+||||+||..|+.+++++|+++|++ ++.+|.
T Consensus 16 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g------~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~-~~~~d~ 88 (110)
T 2zgd_A 16 RGSHMGSDLGKKLLEAARAGQDDEVRILMANG------ADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD-VXAQDK 88 (110)
T ss_dssp ------CCHHHHHHHHHHHTCHHHHHHHHHTT------CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCT
T ss_pred cccccCCccchHHHHHHHcCCHHHHHHHHHcC------CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-cccccc
Confidence 34456889999999999999999999999986 78999999999999999999999999999999998 999999
Q ss_pred CCCcHHHHHHHCCCHHHHHHH
Q 004365 117 ENETPFFLAALHGHKDAFLCL 137 (759)
Q Consensus 117 ~G~TpLh~Aa~~g~~~iv~~L 137 (759)
.|+||||+|+..|+.+++++|
T Consensus 89 ~g~tpl~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 89 FGKTAFDISIDNGNEDLAEIL 109 (110)
T ss_dssp TSCCHHHHHHHHTCHHHHHHH
T ss_pred CCCcHHHHHHHcCCHHHHHHh
Confidence 999999999999999999987
No 115
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=34.47 E-value=40 Score=34.15 Aligned_cols=22 Identities=9% Similarity=0.036 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhc
Q 004365 687 TSLFVSIASMLVSFCAGHFFVL 708 (759)
Q Consensus 687 ~~~~~~~~~m~~af~~~~~~~~ 708 (759)
.+..+|+.+|..+|++|+|-+-
T Consensus 281 ~LTiit~IflP~T~IaGiyGMN 302 (339)
T 4ev6_A 281 ILTMVTTIFAVPMWITGIYGMN 302 (339)
T ss_dssp HHHHHHHHSSHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHhhccCc
Confidence 4667888889999999999763
No 116
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=33.82 E-value=98 Score=21.63 Aligned_cols=14 Identities=14% Similarity=-0.133 Sum_probs=7.7
Q ss_pred cchhhhHHHHHHHH
Q 004365 712 LKYAAFPVYAVTCL 725 (759)
Q Consensus 712 ~~~~~~~~~~~~~~ 725 (759)
..|+.|++++++.+
T Consensus 10 vp~wiIi~svl~GL 23 (54)
T 2knc_A 10 IPIWWVLVGVLGGL 23 (54)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHH
Confidence 45565556555544
No 117
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=32.51 E-value=32 Score=35.28 Aligned_cols=21 Identities=19% Similarity=0.273 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhh
Q 004365 687 TSLFVSIASMLVSFCAGHFFV 707 (759)
Q Consensus 687 ~~~~~~~~~m~~af~~~~~~~ 707 (759)
.+..+|+.+|..+|++|+|-+
T Consensus 305 ~LTiit~IflP~T~IaGiyGM 325 (363)
T 2iub_A 305 VLTIIATIFMPLTFIAGIYGM 325 (363)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-
T ss_pred HHHHHHHHHHHHHHHHhhhcc
Confidence 467888889999999999965
No 118
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=32.36 E-value=1.3e+02 Score=21.03 Aligned_cols=16 Identities=13% Similarity=0.071 Sum_probs=9.0
Q ss_pred cccchhhhHHHHHHHH
Q 004365 710 EKLKYAAFPVYAVTCL 725 (759)
Q Consensus 710 ~~~~~~~~~~~~~~~~ 725 (759)
....|+.|++++++.+
T Consensus 5 ~~vp~WiIi~svl~GL 20 (54)
T 2l8s_A 5 GRVPLWVILLSAFAGL 20 (54)
T ss_dssp CCCCTHHHHHHHHHHH
T ss_pred ccCchHHHHHHHHHHH
Confidence 3345666666666544
No 119
>1vry_A Glycine receptor alpha-1 chain; second transmembrane domain, third transmembrane domain, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=32.17 E-value=1.1e+02 Score=23.16 Aligned_cols=41 Identities=15% Similarity=0.221 Sum_probs=28.9
Q ss_pred HHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 004365 698 VSFCAGHFFVLREKLKYAAFPVYAVTCLPVTLFAIAQFPLY 738 (759)
Q Consensus 698 ~af~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 738 (759)
....+++-.-+|..+...++-++.++|+..+|.+++.+...
T Consensus 16 tt~~~~~~~~lPkVSYikAiDvw~~~C~~FVF~aLlEya~V 56 (76)
T 1vry_A 16 TTQSSGSRASLPKVSYVKAIDIWLAVCLLFVFSALLEYAAV 56 (76)
T ss_dssp HHHHHCTTTCCCSHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCcccCCCCccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555667777778888888888887777777666543
No 120
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=28.00 E-value=2.4e+02 Score=25.23 Aligned_cols=133 Identities=8% Similarity=-0.054 Sum_probs=86.1
Q ss_pred cHHHHHHHHcCCHHHHHHHHhhCcCccccccCCCCC-hHHHHHHHcCCHHHHHHHHHHhhhhcccccCccCCCCCChHHH
Q 004365 11 KKDLFKRAMKGEWKEVVKNYEKDERIHKVKITRSGG-TALHIAVSDGQEEIVEDLVRIIKEKQQLEALTIGDERGSTPLH 89 (759)
Q Consensus 11 ~~~L~~aa~~g~~~~v~~lL~~~~~~~~~~~d~~g~-TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~d~~G~TpLh 89 (759)
.+.+-.|...|+.+....+...- .+..-| ..=..|-..|+.++++....+- .|-. ..+.
T Consensus 9 ~~rF~LAL~lg~l~~A~e~a~~l-------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~-----------~D~~--~L~~ 68 (177)
T 3mkq_B 9 HIRFDLALEYGNLDAALDEAKKL-------NDSITWERLIQEALAQGNASLAEMIYQTQ-----------HSFD--KLSF 68 (177)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT-----------TCHH--HHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHh-------CCHHHHHHHHHHHHHcCChHHHHHHHHHh-----------CCHH--HHHH
Confidence 45667788999999998887751 122223 3345677889999999888763 1222 3344
Q ss_pred HHHHcCCHHHHHHHHHcCCcccCCCCCCCCcHHHHHHHCCCH-HHHHHHHhcCCCCCCCCccccCCCCCcHHHHHHHcCC
Q 004365 90 IAAGLGNVSMCKCIATADRKLIGERNHENETPFFLAALHGHK-DAFLCLHCLCASVDDGYTYSRRNDGETILHCAISGDY 168 (759)
Q Consensus 90 ~Aa~~g~~eiv~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~-~iv~~Ll~~ga~~~~~~~~~~d~~g~TpLh~A~~~g~ 168 (759)
+....|+.+-++.|.+.. ....+-+.++|.+-..|+. ++++.|++.|.-+ -+...|-.+|.
T Consensus 69 Ly~~tg~~e~L~kla~iA-----~~~g~~n~af~~~l~lGdv~~~i~lL~~~~r~~-------------eA~~~A~t~g~ 130 (177)
T 3mkq_B 69 LYLVTGDVNKLSKMQNIA-----QTREDFGSMLLNTFYNNSTKERSSIFAEGGSLP-------------LAYAVAKANGD 130 (177)
T ss_dssp HHHHHTCHHHHHHHHHHH-----HHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHH-------------HHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHH-----HHCccHHHHHHHHHHcCCHHHHHHHHHHCCChH-------------HHHHHHHHcCc
Confidence 445577777666664421 1122334678888788876 4778887764422 25567778999
Q ss_pred HHHHHHHHHhcCc
Q 004365 169 FDLAFQIIHLYEK 181 (759)
Q Consensus 169 ~~iv~~Ll~~~~~ 181 (759)
.++++.+++..+.
T Consensus 131 ~~~a~~~~~~~~~ 143 (177)
T 3mkq_B 131 EAAASAFLEQAEV 143 (177)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCC
Confidence 9999999986553
No 121
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=25.54 E-value=31 Score=21.97 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=12.6
Q ss_pred ccccHHHHHHHHcCCHHHHHHH
Q 004365 8 DQLKKDLFKRAMKGEWKEVVKN 29 (759)
Q Consensus 8 ~~~~~~L~~aa~~g~~~~v~~l 29 (759)
+...+.++.||.+|+.+.+..|
T Consensus 11 ~aiEQqiyvA~seGd~etv~~L 32 (40)
T 1gp8_A 11 DAIRKQMDAAASKGDVETYRKL 32 (40)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHH
Confidence 3344556666666666666544
No 122
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=23.78 E-value=2.6e+02 Score=25.25 Aligned_cols=15 Identities=13% Similarity=0.264 Sum_probs=6.7
Q ss_pred HHHHHHHHHHhhhhh
Q 004365 693 IASMLVSFCAGHFFV 707 (759)
Q Consensus 693 ~~~m~~af~~~~~~~ 707 (759)
++++++=|.+++-++
T Consensus 60 vGAi~VLflFvvMl~ 74 (184)
T 3rko_J 60 AGAIMVLFVFVVMML 74 (184)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc
Confidence 334444444444443
No 123
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A*
Probab=20.77 E-value=3.7e+02 Score=26.89 Aligned_cols=41 Identities=20% Similarity=0.250 Sum_probs=26.4
Q ss_pred HHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHHHHHH
Q 004365 696 MLVSFCAGHFFVLREKLKYAAFPVYAVTCLPVTLFAIAQFP 736 (759)
Q Consensus 696 m~~af~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (759)
.+..|..++--.+|+.+...++-++.++|+.++++.++.+.
T Consensus 255 t~tv~~~~~~~~lP~~S~v~~id~~~~~~~~~v~~slle~~ 295 (347)
T 3rhw_A 255 TMTAQSAGINSQLPPVSYIKAIDVWIGACMTFIFCALLEFA 295 (347)
T ss_dssp HHHHHHHHHHHTSCCCSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCccceeHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777888777666666777777665555554443
Done!