Query 004366
Match_columns 759
No_of_seqs 331 out of 2092
Neff 5.8
Searched_HMMs 46136
Date Thu Mar 28 22:12:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004366.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004366hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0013 AlaS Alanyl-tRNA synth 100.0 5E-228 1E-232 1956.6 67.4 681 47-752 5-696 (879)
2 PLN02900 alanyl-tRNA synthetas 100.0 1E-215 2E-220 1900.8 71.4 693 40-756 3-732 (936)
3 TIGR00344 alaS alanine--tRNA l 100.0 5E-216 1E-220 1899.0 67.5 672 52-751 1-688 (851)
4 PRK00252 alaS alanyl-tRNA synt 100.0 2E-213 4E-218 1883.6 69.4 675 47-752 1-682 (865)
5 KOG0188 Alanyl-tRNA synthetase 100.0 8E-208 2E-212 1715.4 46.6 679 48-752 2-703 (895)
6 TIGR03683 A-tRNA_syn_arch alan 100.0 1E-192 3E-197 1702.7 66.4 645 6-755 17-730 (902)
7 PRK13902 alaS alanyl-tRNA synt 100.0 5E-192 1E-196 1697.0 65.6 645 6-755 20-726 (900)
8 PRK01584 alanyl-tRNA synthetas 100.0 4E-192 8E-197 1622.4 57.3 570 48-755 1-588 (594)
9 PF01411 tRNA-synt_2c: tRNA sy 100.0 1E-175 3E-180 1496.5 15.7 543 52-617 1-552 (552)
10 cd00673 AlaRS_core Alanyl-tRNA 100.0 7E-111 1E-115 851.8 19.2 231 50-280 1-232 (232)
11 COG2872 Predicted metal-depend 100.0 5.7E-45 1.2E-49 375.9 22.1 217 510-753 2-229 (241)
12 PLN02961 alanine-tRNA ligase 100.0 1.4E-44 3.1E-49 372.8 24.1 201 543-756 3-220 (223)
13 KOG2105 Predicted metal-depend 100.0 3.1E-29 6.7E-34 258.0 13.4 193 542-755 43-241 (415)
14 PLN02837 threonine-tRNA ligase 99.6 2.3E-15 5.1E-20 176.6 17.0 148 606-757 29-195 (614)
15 PRK12305 thrS threonyl-tRNA sy 99.6 2.6E-15 5.6E-20 175.2 15.7 133 621-757 7-154 (575)
16 PRK00413 thrS threonyl-tRNA sy 99.5 1.5E-13 3.3E-18 162.2 17.4 152 602-757 50-219 (638)
17 PRK12444 threonyl-tRNA synthet 99.4 1.3E-12 2.8E-17 154.5 15.4 132 621-757 73-223 (639)
18 TIGR00418 thrS threonyl-tRNA s 99.4 9.2E-13 2E-17 153.5 13.4 132 624-758 1-149 (563)
19 PLN02908 threonyl-tRNA synthet 99.2 2E-10 4.4E-15 136.8 16.8 135 620-758 119-271 (686)
20 COG0441 ThrS Threonyl-tRNA syn 98.8 4.1E-08 8.8E-13 114.1 12.6 131 620-757 26-168 (589)
21 PF07973 tRNA_SAD: Threonyl an 98.6 4.5E-08 9.7E-13 76.4 3.3 40 714-756 1-44 (44)
22 smart00863 tRNA_SAD Threonyl a 98.5 7.7E-08 1.7E-12 74.6 3.8 40 714-756 1-44 (44)
23 cd00768 class_II_aaRS-like_cor 96.2 0.018 3.8E-07 57.8 8.4 175 51-273 3-211 (211)
24 PRK09348 glyQ glycyl-tRNA synt 95.7 0.16 3.5E-06 53.7 12.9 174 46-286 2-180 (283)
25 TIGR00388 glyQ glycyl-tRNA syn 95.7 0.12 2.7E-06 54.7 12.0 172 48-286 1-177 (293)
26 PF01411 tRNA-synt_2c: tRNA sy 94.6 0.0076 1.6E-07 70.9 -0.7 91 178-294 107-200 (552)
27 cd00733 GlyRS_alpha_core Class 94.6 0.45 9.7E-06 50.3 12.0 170 50-286 2-176 (279)
28 PRK14908 glycyl-tRNA synthetas 93.0 0.85 1.8E-05 57.0 12.6 174 46-286 3-181 (1000)
29 TIGR00458 aspS_arch aspartyl-t 89.7 2.8 6.2E-05 48.1 11.8 97 51-156 137-247 (428)
30 PRK09350 poxB regulator PoxA; 88.8 2 4.4E-05 47.1 9.3 108 51-170 9-138 (306)
31 cd00669 Asp_Lys_Asn_RS_core As 88.2 1 2.2E-05 48.5 6.4 97 51-156 5-116 (269)
32 PF02091 tRNA-synt_2e: Glycyl- 88.2 0.88 1.9E-05 48.5 5.6 169 51-286 2-175 (284)
33 COG0752 GlyQ Glycyl-tRNA synth 86.7 7.8 0.00017 41.1 11.5 174 46-286 3-181 (298)
34 TIGR00462 genX lysyl-tRNA synt 85.0 5.1 0.00011 43.9 9.8 99 51-160 5-124 (304)
35 PRK03932 asnC asparaginyl-tRNA 83.8 18 0.00039 41.9 14.0 99 51-155 137-254 (450)
36 TIGR00499 lysS_bact lysyl-tRNA 83.5 7.8 0.00017 45.5 11.0 98 52-155 177-293 (496)
37 PRK00488 pheS phenylalanyl-tRN 82.2 1.6 3.6E-05 48.5 4.6 27 50-76 110-136 (339)
38 PLN02502 lysyl-tRNA synthetase 72.6 19 0.00042 42.8 10.0 81 52-142 234-332 (553)
39 PRK14799 thrS threonyl-tRNA sy 70.5 5.2 0.00011 47.4 4.7 79 649-757 30-116 (545)
40 KOG1501 Arginine N-methyltrans 69.3 6.9 0.00015 44.8 5.0 76 263-338 72-158 (636)
41 PTZ00450 macrophage migration 67.1 6 0.00013 37.3 3.5 24 149-172 79-102 (113)
42 KOG1637 Threonyl-tRNA syntheta 64.0 2.8 6.2E-05 48.0 0.8 50 622-675 68-117 (560)
43 PF03002 Somatostatin: Somatos 62.2 3.7 8E-05 26.2 0.7 12 9-20 5-16 (18)
44 PF01422 zf-NF-X1: NF-X1 type 58.1 4.3 9.4E-05 26.8 0.5 9 207-215 12-20 (20)
45 cd00776 AsxRS_core Asx tRNA sy 57.5 20 0.00044 39.6 6.0 95 51-156 28-138 (322)
46 PTZ00397 macrophage migration 56.5 12 0.00026 34.9 3.5 30 144-173 74-103 (116)
47 KOG1759 Macrophage migration i 56.3 12 0.00026 35.4 3.3 26 149-174 78-103 (115)
48 COG0016 PheS Phenylalanyl-tRNA 55.7 13 0.00028 41.5 4.0 23 50-72 113-135 (335)
49 PRK12295 hisZ ATP phosphoribos 52.7 52 0.0011 37.2 8.4 110 45-162 2-136 (373)
50 cd00670 Gly_His_Pro_Ser_Thr_tR 49.4 24 0.00052 36.3 4.7 106 51-162 6-149 (235)
51 PTZ00401 aspartyl-tRNA synthet 47.2 32 0.00068 41.0 5.7 94 51-155 217-327 (550)
52 TIGR00443 hisZ_biosyn_reg ATP 46.7 70 0.0015 35.0 8.1 107 49-162 10-143 (314)
53 PF01409 tRNA-synt_2d: tRNA sy 46.2 11 0.00023 40.3 1.5 27 50-76 19-45 (247)
54 PTZ00326 phenylalanyl-tRNA syn 45.8 18 0.0004 42.3 3.5 58 212-282 425-483 (494)
55 PF01187 MIF: Macrophage migra 41.9 22 0.00047 33.2 2.7 21 151-171 79-99 (114)
56 PLN02850 aspartate-tRNA ligase 39.9 48 0.001 39.4 5.7 83 51-140 229-325 (530)
57 COG3981 Predicted acetyltransf 39.6 23 0.0005 35.9 2.6 33 329-362 101-133 (174)
58 smart00438 ZnF_NFX Repressor o 39.1 13 0.00029 26.2 0.6 11 207-217 12-22 (26)
59 cd00777 AspRS_core Asp tRNA sy 38.8 17 0.00037 39.4 1.7 98 51-156 5-116 (280)
60 cd00773 HisRS-like_core Class 36.9 52 0.0011 34.9 5.0 111 50-163 5-139 (261)
61 PF11867 DUF3387: Domain of un 35.0 3.5E+02 0.0076 30.0 11.3 197 258-481 33-256 (335)
62 cd00830 KAS_III Ketoacyl-acyl 35.0 12 0.00025 40.4 -0.3 77 128-214 207-284 (320)
63 PRK12292 hisZ ATP phosphoribos 33.9 1E+02 0.0022 35.0 7.0 107 50-162 20-154 (391)
64 cd00776 AsxRS_core Asx tRNA sy 33.2 24 0.00052 39.0 1.8 28 262-289 290-317 (322)
65 KOG2783 Phenylalanyl-tRNA synt 31.8 25 0.00054 39.8 1.5 33 262-297 295-327 (436)
66 PLN02853 Probable phenylalanyl 30.7 47 0.001 39.0 3.6 24 50-73 223-246 (492)
67 PF00152 tRNA-synt_2: tRNA syn 30.2 30 0.00065 38.2 1.9 23 267-289 308-330 (335)
68 COG2024 Phenylalanyl-tRNA synt 29.9 57 0.0012 37.0 3.9 131 137-283 211-345 (536)
69 PF02092 tRNA_synt_2f: Glycyl- 29.3 3E+02 0.0065 33.0 9.9 64 314-386 445-508 (548)
70 PLN02850 aspartate-tRNA ligase 28.2 30 0.00065 41.0 1.6 29 262-290 494-522 (530)
71 TIGR00457 asnS asparaginyl-tRN 28.1 31 0.00068 40.0 1.7 29 262-290 417-445 (453)
72 PRK12420 histidyl-tRNA synthet 28.1 2.1E+02 0.0045 32.8 8.3 105 50-161 21-154 (423)
73 cd00775 LysRS_core Lys_tRNA sy 27.8 31 0.00068 38.3 1.5 99 51-156 12-123 (329)
74 PRK06462 asparagine synthetase 26.9 35 0.00075 38.0 1.7 101 51-155 34-151 (335)
75 PRK09537 pylS pyrolysyl-tRNA s 26.8 1.7E+02 0.0037 33.8 7.1 170 50-282 206-399 (417)
76 TIGR00747 fabH 3-oxoacyl-(acyl 26.8 24 0.00053 38.1 0.4 51 156-214 229-280 (318)
77 PTZ00401 aspartyl-tRNA synthet 26.6 35 0.00075 40.7 1.7 29 262-290 514-542 (550)
78 PTZ00425 asparagine-tRNA ligas 26.6 34 0.00074 41.0 1.6 50 103-156 343-398 (586)
79 PRK06129 3-hydroxyacyl-CoA deh 26.1 1.2E+02 0.0025 33.1 5.6 69 325-403 231-305 (308)
80 PLN02532 asparagine-tRNA synth 25.9 37 0.00079 41.1 1.7 29 262-290 597-625 (633)
81 COG0017 AsnS Aspartyl/asparagi 25.6 41 0.0009 38.8 2.0 78 51-135 138-227 (435)
82 COG1190 LysU Lysyl-tRNA synthe 25.5 26 0.00055 41.0 0.3 130 7-142 116-283 (502)
83 PLN02530 histidine-tRNA ligase 25.5 3E+02 0.0065 32.3 9.1 112 50-168 87-226 (487)
84 PLN02603 asparaginyl-tRNA synt 25.0 38 0.00083 40.5 1.6 29 262-290 529-557 (565)
85 PRK12445 lysyl-tRNA synthetase 25.0 39 0.00084 39.9 1.7 82 52-142 189-287 (505)
86 PLN02221 asparaginyl-tRNA synt 24.5 38 0.00083 40.5 1.5 46 103-154 326-372 (572)
87 PRK12293 hisZ ATP phosphoribos 24.4 1.7E+02 0.0037 31.8 6.4 102 49-162 21-142 (281)
88 PRK08561 rps15p 30S ribosomal 24.4 2.2E+02 0.0048 28.4 6.5 50 431-483 40-96 (151)
89 PRK05159 aspC aspartyl-tRNA sy 23.3 44 0.00095 38.6 1.7 84 52-142 141-239 (437)
90 COG4014 Uncharacterized protei 23.0 1E+02 0.0022 28.0 3.5 34 513-554 15-48 (97)
91 PRK00484 lysS lysyl-tRNA synth 22.8 43 0.00092 39.4 1.5 85 52-142 177-275 (491)
92 cd00775 LysRS_core Lys_tRNA sy 22.8 1.9E+02 0.0042 32.1 6.5 28 262-289 297-324 (329)
93 PTZ00417 lysine-tRNA ligase; P 22.4 45 0.00097 40.1 1.5 23 267-289 556-578 (585)
94 TIGR00013 taut 4-oxalocrotonat 21.7 1.1E+02 0.0025 24.8 3.4 31 143-173 16-46 (63)
95 PTZ00385 lysyl-tRNA synthetase 20.8 44 0.00096 40.6 1.1 81 52-142 238-336 (659)
No 1
>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.1e-228 Score=1956.64 Aligned_cols=681 Identities=50% Similarity=0.860 Sum_probs=647.6
Q ss_pred CCChHHHHHHHHHHHhhCCCeeecCccCcC-CCCccceeccccccccccccccCCCCCCCcccccCcccCCCccccCCCC
Q 004366 47 PSSGDSIRKRFLDFYASRGHKVLPSASLVP-EDPTVLLTIAGMLQFKPIFLGKVPRQVPRAATSQRCIRTNDVENVGRTS 125 (759)
Q Consensus 47 ~~~~~eiR~~Fl~fF~~~gH~~v~s~slvp-~d~tllf~nAGm~~fk~~f~g~~~p~~~r~~~~QkCiR~nDldnVG~t~ 125 (759)
+||++|||++||+||++|||+++||||||| +|||||||||||+||||||+|.++||++|+||||||||+|||||||+|+
T Consensus 5 ~~t~~EiR~~FL~FF~~kgH~~v~s~slVP~nDptLLftnAGm~~FK~~f~g~v~p~~~r~~~sQkcIR~NDieNVG~T~ 84 (879)
T COG0013 5 KLTTNEIRQKFLDFFEKKGHTVVPSSPLVPRNDPTLLFTNAGMVQFKPYFTGGVTPPANRAVTSQKCIRTNDIDNVGYTA 84 (879)
T ss_pred cCCHHHHHHHHHHHHHHCCCeecCCCCcCCCCCCCeEEeecccccchhhhcCCCCCCCCCeeccccccccCchhhcCccc
Confidence 499999999999999999999999999999 7999999999999999999999999999999999999999999999999
Q ss_pred CcccccccccCCccCcccHHHHHHHHHHhhhcccCCCCCceEEEEeCChHHHHHHHHHhcCCCCCceeccCCCCCccCCC
Q 004366 126 RHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSG 205 (759)
Q Consensus 126 rH~TfFEMlGn~SfgdYfK~eai~~awefLt~~l~l~~~rl~vTv~~~D~e~~~iW~~~~g~~~~~I~~~~~~dNfW~~G 205 (759)
|||||||||||||||||||+|||+|||||||++|||||+|||||||++|+||+++|++.+|+|++||++++.+||||+||
T Consensus 85 RHhTfFEMLGNfSFGdYFKeeAI~~AwEflT~~lgl~~ekL~vtvy~~Ddea~~~W~~~~gip~~rIir~~~~dNfW~~G 164 (879)
T COG0013 85 RHHTFFEMLGNFSFGDYFKEEAIEFAWEFLTKVLGLPKEKLYVTVYEDDDEAYNEWEKIIGIPPERIIRIGASDNFWEMG 164 (879)
T ss_pred cchhHHHhhhcCchhHHHHHHHHHHHHHHHHhhcCCCHHHEEEEEecCchHHHHHHHhhcCCCHHHeeecCcCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCceEEEEecCCCCCCCCCC--CCCCCceEEEeeeeccccccc-CCCccccCccCcccccchHHHHHHHHhCCCC
Q 004366 206 ATGPCGPCSEIYYDFHPDRGCSDVD--LGDDTRFIEFYNLVFMQYNKK-DDGSLEPLKQKNIDTGLGLERIARILQKVPN 282 (759)
Q Consensus 206 ~~GpcGPcsEI~~d~g~~~~~~~~~--~~~~~r~lEiwNlVFmq~~~~-~~g~~~~Lp~k~IDTGmGlERl~~vlqg~~s 282 (759)
+ ||||||||||||||+.+++..+. ..|++|||||||||||||||+ ++|+|.|||+||||||||||||+|||||+||
T Consensus 165 ~-GPcGPcsEI~yD~G~~~~~~~~~~~~~d~dR~lEiwNLVFmQfnr~~~~g~~~~Lp~k~IDTGmGLERi~~vlQ~~~t 243 (879)
T COG0013 165 D-GPCGPCSEIFYDRGEEIGGGPPGSPDEDGDRYLEIWNLVFMQYNRDPGDGNYTPLPKKNIDTGMGLERIAAVLQGVPT 243 (879)
T ss_pred C-cCCCCceEEEEcCCcccCCCCCCCcCCCCCceEEEeeeeehhhccCCCCCCcccCCCCCcccCccHHHHHHHHcCCCc
Confidence 9 99999999999999999987774 488999999999999999999 6999999999999999999999999999999
Q ss_pred cccccccHHHHHHHHHHhCCCccCCccccccceEEeehhhhhHHhhhhCCCccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 004366 283 NYETDLIFPIIKKASELANVSYAQSNDRTNLNLKIIGDHLRAIVYLLSDGVFPSNIGRGYVVRRLIRRAVRTGRLLGIKG 362 (759)
Q Consensus 283 ~ydtd~F~~li~~i~~~~~~~y~~~~~~~~~~~rviaDH~R~~~~~i~DG~~Psn~grGYvlRrilRRa~r~~~~lg~~~ 362 (759)
|||||+|.|||+.+++++|+.|..+.+..++++||||||+||++|||+|||+|||+|||||||||||||+||+++||++.
T Consensus 244 nyd~dlf~~ii~~~e~~~g~~~~~~~~~~~~s~rVIADH~Rs~~f~iaDGv~PSNegrGYvlRriiRRa~R~~~~LG~~~ 323 (879)
T COG0013 244 NYDTDLFRPIIKAIEKLTGKKYGEDEEDPDVSFRVIADHIRSLAFMIADGVLPSNEGRGYVLRRIIRRALRHGKLLGIKE 323 (879)
T ss_pred chhhhhhHHHHHHHHHHhCCcCCccccccceeEEEehhHHHHHHHHHhCCCCcCCCCccHHHHHHHHHHHHHHHHhCCCc
Confidence 99999999999999999999997655334889999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccccchHHHHHHHHHHhccCChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCh
Q 004366 363 DGRGNLEGAFLPSIAEKAIELSTHIDSDVKAREQRILEELKREELRFVQTLERGEKLLDQMLADALSRTRESGSVPRLSG 442 (759)
Q Consensus 363 ~~~~~~~~~~l~~lv~~v~~~m~~~yPeL~~~~~~I~~ii~~EE~~F~~tL~~G~~~l~~~i~~~~~~~~~~g~~~~l~g 442 (759)
| ||++|||.+++.|+++||||.++++.|+++|+.||++|.+||++|+++|+++++ ++++ + ++|||
T Consensus 324 ~--------fl~~LV~~~~~~m~~~ypel~~~~~~I~~vl~~EEe~F~~TL~~G~~l~~~~~~----~~~~-~--~~l~g 388 (879)
T COG0013 324 P--------FLYKLVDTVIDEMGDAYPELKEKEDFIKEVLKLEEERFAKTLERGLKLLEKELA----KLKK-S--KTLDG 388 (879)
T ss_pred h--------HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhcc-C--CccCh
Confidence 9 999999999999999999999999999999999999999999999999999998 6655 3 58999
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHcCCeeChhhHHHHHHHHHHHHHHhhcccccccCCh--hHHhhhCCCCcccccccccc
Q 004366 443 QDAFLLYDTFGFPVEITKEVAEEHGVSVDMKGFDIEMENQRRQSQAAHNAVKLSVDDS--ADLAEKIPDTEFLGYDTLSA 520 (759)
Q Consensus 443 ~~af~LydTyGfP~dlt~~ia~e~g~~vd~~~F~~~~~~~r~~sr~~~~~~~~~~~~~--~~l~~~~~~T~f~gY~~~~~ 520 (759)
++||+||||||||+|||++||+|+|++||+++|+.+|++||++||+++ .+....... ..+.+..++|+|+||+++++
T Consensus 389 e~afkLYDTyGfP~eLt~eia~e~g~~VD~~~f~~~m~~qr~~ar~~~-~~~~~~~~~~~~~~~~~~~~tef~gY~~~~~ 467 (879)
T COG0013 389 EDAFKLYDTYGFPVELTEEIAEERGLKVDEPGFEYAMEAQRERARASA-GSGEGAKESEDLELIDKLPETEFLGYDDLEM 467 (879)
T ss_pred HHheeehhcCCCCHHHHHHHHHHcCCeeccccHHHHHHHHHHHhhhcc-ccccccchhhhhhhhccCCCceeeecccccc
Confidence 999999999999999999999999999999999999999999999765 222111111 12223367899999999999
Q ss_pred ceEEEEEEeCCeeeeeecCCCeEEEEecCcceecCCCCCCCCeEEEEeCC-CcccccceEEEEEEEEeCCCEEEEEEEee
Q 004366 521 KAIVESLLVNGKPVIKVSKGSDVEVLLNRTPFYAESGGQIGDYGFLYVTQ-GTNQQTAVVEVKDVKKSLGSVFVHKGTIR 599 (759)
Q Consensus 521 ~akVl~i~~~~~~v~~~~~g~~~~VvLD~T~FYpEgGGQ~~D~G~I~~~~-~~~~~~~~~~V~dV~k~~~g~ivH~~~~~ 599 (759)
+++|++++.+++.|+++.+|++++||||+||||||||||++|+|+|..++ . .+.|.||||.++|+++|.+...
T Consensus 468 ~~~i~~l~~~~~~v~~~~~g~~~~vVld~TpFYaEsGGQ~~D~G~i~~~~~~------~~~V~dvqK~~~~~~vH~~~~~ 541 (879)
T COG0013 468 EFKVLVLFVDGKEVSELNEGQEVYVVLDQTPFYAESGGQVGDTGYIFGDGGG------RFEVTDVQKVGNGVIVHKGKVE 541 (879)
T ss_pred eEEEEEEEecCcccccccCCceEEEEEecCCccCCCCCccCceEEEEecCCc------EEEEEEEEEcCCceEEEEEeec
Confidence 99999999888769999999999999999999999999999999999874 5 8999999999669999999998
Q ss_pred ccccCCCCEEEEEEccccchHHHHhccHHHHHHHHHHhHhCCcceeeeeeccCCcEEEEEecCCCCCHHHHHHHHHHHHH
Q 004366 600 EGVLEVGREVEAIVDPKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLDTELEEIERLING 679 (759)
Q Consensus 600 ~g~l~~G~~V~~~VD~~rR~~~mr~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~~R~DF~~~~~lt~eel~~IE~~vNe 679 (759)
.|.|++|+.|.++|||+||+++|+|||||||||+|||++||.|++|+||+++++++||||+|++++|+|||++||+.||+
T Consensus 542 ~G~l~~gd~V~~~vD~~rR~~~~~nHTATHLLh~ALr~VLG~hV~QaGSlv~~~~lRfDfsH~~~it~Eel~~IE~~vNe 621 (879)
T COG0013 542 SGELKVGDEVTAEVDEERRRRLMRNHTATHLLHAALRKVLGDHVWQAGSLVDPEKLRFDFSHYKALTAEELKEIERLVNE 621 (879)
T ss_pred cCccCCCCEEEEEECHHHHHHHHhhChHHHHHHHHHHHHhCccceecCcccCCCeeEEeecCCCCCCHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCEEEEEcCHHHHHHhchhhhcCCCCCCcEEEEEECCccccccccCCccc----ccCcEEEEeeecCCCCce
Q 004366 680 WIGDANLLQTKVMALDDAKRAGAIAMFGEKYGEQVKISSKMYVLWRFLVCLWNFV----VEPMLTILLKSEPSKSFL 752 (759)
Q Consensus 680 iI~~~~pV~~~~~~~eEA~~~~~~~lf~eky~~~VRVV~Ig~~~~d~~~CgGTHV----eIG~IkIl~~~~~gk~~~ 752 (759)
+|++|+||.+.+|++++|++.|++++|||+|++.||||+||+ ++.++|||||| +||.|||++.+..++|-+
T Consensus 622 ~I~~n~~V~~~~m~~~eAk~~Ga~alfGekY~~~VRVV~ig~--~SvElCGGTHv~~Tg~IG~fkI~~e~~i~aGVr 696 (879)
T COG0013 622 IIRENLPVKTEEMDLDEAKAKGAMALFGEKYGDEVRVVEIGD--FSVELCGGTHVSNTGDIGLFKIISEEGIAAGVR 696 (879)
T ss_pred HHHcCCceeEEEccHHHHHHhChHhhcCCcCCCeEEEEEECC--ceeeccCCcccCCccceeeEEEEEecccccCeE
Confidence 999999999999999999999999999999999999999999 89999999999 899999999999999865
No 2
>PLN02900 alanyl-tRNA synthetase
Probab=100.00 E-value=1e-215 Score=1900.80 Aligned_cols=693 Identities=49% Similarity=0.838 Sum_probs=643.2
Q ss_pred cccCCCCCCChHHHHHHHHHHHhhCCCeeecCccCcC-CCCccceeccccccccccccccCCC-----CCCCcccccCcc
Q 004366 40 EDKSQDFPSSGDSIRKRFLDFYASRGHKVLPSASLVP-EDPTVLLTIAGMLQFKPIFLGKVPR-----QVPRAATSQRCI 113 (759)
Q Consensus 40 ~~~~~~~~~~~~eiR~~Fl~fF~~~gH~~v~s~slvp-~d~tllf~nAGm~~fk~~f~g~~~p-----~~~r~~~~QkCi 113 (759)
+|++-.++||++|||++||+||+++||+++||||||| +|||||||||||+||||||+|..+| |++|+|||||||
T Consensus 3 ~~~~~~~~~~~~eiR~~Fl~FF~~~gH~~v~s~slvp~~dptllftnAGm~~Fk~~f~G~~~p~~~~~~~~R~~~~QkCi 82 (936)
T PLN02900 3 EDDAPEKEWPGDRIRRTFLSFFESKGHTFLPSSPLVPVDDPTLLFTNAGMNQFKPIFLGTADPNTPLRKLPRATNTQKCI 82 (936)
T ss_pred CCccccCCCCHHHHHHHHHHHHHhCCCEEeCCCCcCCCCCCCeeeeecchhhhhhhhcCCCCCCCCCCCCCceeeecccc
Confidence 5677778899999999999999999999999999999 7899999999999999999999999 788999999999
Q ss_pred cC----CCccccCCCCCcccccccccCCccCcccHHHHHHHHHHhhhcccCCCCCceEEEEeCChH------HHHHHHHH
Q 004366 114 RT----NDVENVGRTSRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPANRLWISVYEDDD------EAFEIWNK 183 (759)
Q Consensus 114 R~----nDldnVG~t~rH~TfFEMlGn~SfgdYfK~eai~~awefLt~~l~l~~~rl~vTv~~~D~------e~~~iW~~ 183 (759)
|+ |||||||+|+|||||||||||||||||||+|||.|||||||++|||||+|||||||++|+ ||++||++
T Consensus 83 R~gGKHnDlenVG~t~rHhTfFEMlGnfSfgdYfK~eaI~~awe~lT~~l~i~~~~l~vTv~~~D~~~~~d~Ea~~iW~~ 162 (936)
T PLN02900 83 RAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIGWAWELLTKVYGLPADRLYATYFGGDEKQAPDDEARAIWLD 162 (936)
T ss_pred cCCCCCCCHhhccCCCCchHHHHhhhccchhhhhHHHHHHHHHHHHHHhcCCCHHHEEEEEeCCCCCcCCCHHHHHHHHH
Confidence 99 999999999999999999999999999999999999999999999999999999999999 99999998
Q ss_pred hcCCCCCceeccCCCCCccCCCCCCCCCCceEEEEecCCCCCCCCCCCCCCCceEEEeeeecccccccCCCccccCccCc
Q 004366 184 EVGVPVEHIKRMGADDNFWNSGATGPCGPCSEIYYDFHPDRGCSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKN 263 (759)
Q Consensus 184 ~~g~~~~~I~~~~~~dNfW~~G~~GpcGPcsEI~~d~g~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~~~~Lp~k~ 263 (759)
. ||++||+++|.+||||+||+|||||||||||||+|+++++...+..+|+|||||||||||||||++||+|+|||+||
T Consensus 163 ~--~~~~rI~~~~~~dNfW~~G~tGpcGPcsEi~yD~g~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~~~~Lp~~~ 240 (936)
T PLN02900 163 Y--LPEERVLPFGCKDNFWEMGDTGPCGPCSEIHYDRIGERDAADLVNNDDPRFIEIWNLVFIQFNREADGSLKPLPAKH 240 (936)
T ss_pred h--CCHHHeecCCcccCCccCCCCcCCCCCeEEEEecCCccCccccCCCCCCCEEEEeeeeeeeeeecCCCceeeCCCCe
Confidence 7 99999999999999999999999999999999999998865444458899999999999999999999999999999
Q ss_pred ccccchHHHHHHHHhCCCCcccccccHHHHHHHHHHhC------CCccCCccccccceEEeehhhhhHHhhhhCCCccCC
Q 004366 264 IDTGLGLERIARILQKVPNNYETDLIFPIIKKASELAN------VSYAQSNDRTNLNLKIIGDHLRAIVYLLSDGVFPSN 337 (759)
Q Consensus 264 IDTGmGlERl~~vlqg~~s~ydtd~F~~li~~i~~~~~------~~y~~~~~~~~~~~rviaDH~R~~~~~i~DG~~Psn 337 (759)
||||||||||+|||||++||||||+|.|||++|++++| +.|+.+....++|+||||||+||++|||+||++|||
T Consensus 241 IDTGmGLERl~~vlqg~~snydtDlf~pii~~i~~~~~~~~~~~~~y~~~~~~~~~a~rviaDH~R~~~f~i~DGv~PsN 320 (936)
T PLN02900 241 VDTGMGLERLASILQNKPSNYDTDLFMPIFDAIQEATGARPYAGKVGAEDDDRVDMAYRVVADHIRTLSFAIADGVVPSN 320 (936)
T ss_pred eecCcCHHHHHHHHcCCCCcchhhhHHHHHHHHHHHhCCCccccccccccccccceeeeeehhhHHHHHHHHhcCCccCC
Confidence 99999999999999999999999999999999999999 566533225679999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHHHHH-hCCCCCCCCCccccchHHHHHHHHHHhccCChhhHHhHHHHHHHHHHHHHHHHHHHHHH
Q 004366 338 IGRGYVVRRLIRRAVRTGRL-LGIKGDGRGNLEGAFLPSIAEKAIELSTHIDSDVKAREQRILEELKREELRFVQTLERG 416 (759)
Q Consensus 338 ~grGYvlRrilRRa~r~~~~-lg~~~~~~~~~~~~~l~~lv~~v~~~m~~~yPeL~~~~~~I~~ii~~EE~~F~~tL~~G 416 (759)
+|||||||||||||+|++++ ||++.| ||++||+.|++.|++.||||.++++.|++||+.||++|.+||++|
T Consensus 321 ~grgYvlRrilRRa~r~~~~~lg~~~~--------fl~~lv~~v~~~~~~~ypel~~~~~~I~~ii~~EE~~F~~tl~~G 392 (936)
T PLN02900 321 EGRGYVLRRLLRRAVRYGRLLLGAEEG--------FFPALVEVVVELSGDVFPEVKKNEKRITEIIAEEELSFGKTLEKG 392 (936)
T ss_pred CCccHHHHHHHHHHHHHHHHhcCCCcc--------hHHHHHHHHHHHHhccCcHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 899999 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCCChHHHHHHhhcCCCChhhHHHHHHHcCCeeChhhHHHHHHHHHHHHHHhhccccc-
Q 004366 417 EKLLDQMLADALSRTRESGSVPRLSGQDAFLLYDTFGFPVEITKEVAEEHGVSVDMKGFDIEMENQRRQSQAAHNAVKL- 495 (759)
Q Consensus 417 ~~~l~~~i~~~~~~~~~~g~~~~l~g~~af~LydTyGfP~dlt~~ia~e~g~~vd~~~F~~~~~~~r~~sr~~~~~~~~- 495 (759)
+++|+++++ +++++|+ +.|||++||+||||||||+|||++||+|+|++||+++|+++|++||++||++++....
T Consensus 393 ~~~l~~~i~----~~~~~~~-~~l~g~~af~LydTyGfP~dlt~~ia~e~g~~vD~~~F~~~~~~~~~~s~~~~~~~~~~ 467 (936)
T PLN02900 393 IEKFKKALA----AAKANGG-PVLSGKDAFLLYDTYGFPVDLTELMAEERGVTVDMEGFEAAMEEARERSRAAHLKAGGG 467 (936)
T ss_pred HHHHHHHHH----HHhhcCC-CcCCHHHHHHHHhccCCCHHHHHHHHHHcCCeecHHHHHHHHHHHHHHHHhhhhccccc
Confidence 999999998 5544342 5799999999999999999999999999999999999999999999999976543221
Q ss_pred -ccCCh---hHHhhh--CCCCccccccccc-cceEEEEEEeCCeeeeeecCCCeEEEEecCcceecCCCCCCCCeEEEEe
Q 004366 496 -SVDDS---ADLAEK--IPDTEFLGYDTLS-AKAIVESLLVNGKPVIKVSKGSDVEVLLNRTPFYAESGGQIGDYGFLYV 568 (759)
Q Consensus 496 -~~~~~---~~l~~~--~~~T~f~gY~~~~-~~akVl~i~~~~~~v~~~~~g~~~~VvLD~T~FYpEgGGQ~~D~G~I~~ 568 (759)
...+. ..+.+. .++|+|+||+.++ ++|+|++++.+++.|+++++|+.++|+||+|+|||||||||+|+|+|..
T Consensus 468 ~~~~~~~~~~~~~~~~~~~~t~f~gY~~~~~~~~~v~~i~~~~~~v~~~~~g~~~~vvLd~T~FYpEgGGQp~D~G~I~~ 547 (936)
T PLN02900 468 AIELAAEATSWLQKQGVAATDDFLKYDWLSDHEAVVKAILTGGGFVESVSEGDEVGIVLDKTSFYAESGGQIGDTGVLEG 547 (936)
T ss_pred cccccHHHHHHHHhccCCCCCcccccccCCccceEEEEEEECCceeeeccCCCeEEEEEeCCCCCCCCCCCCCCEEEEec
Confidence 11110 222222 1578999999998 9999999999888899999999999999999999999999999999986
Q ss_pred CCCcccccceEEEEEEEEeCCCEEEEEEEeeccccCCCCEEEEEEccccchHHHHhccHHHHHHHHHHhHhCCcceeeee
Q 004366 569 TQGTNQQTAVVEVKDVKKSLGSVFVHKGTIREGVLEVGREVEAIVDPKLRQRAKVHHTATHLLQAALKKVIGQETSQAGS 648 (759)
Q Consensus 569 ~~~~~~~~~~~~V~dV~k~~~g~ivH~~~~~~g~l~~G~~V~~~VD~~rR~~~mr~HTAtHLL~aALr~vlG~~v~q~Gs 648 (759)
+++ ..+.|.+|++. +|.++|.+....+.+.+|++|.++|||+||+.+|++|||+|||++||+++||.|++|+|+
T Consensus 548 ~~~-----~~~~V~dv~k~-~g~i~H~~~~~~g~l~~G~~V~~~VD~~rR~~~m~~HTAtHLL~aALr~vlG~~v~q~Gs 621 (936)
T PLN02900 548 SGG-----AVVEVSDVQKA-GGFVLHIGTVTEGSVSVGDAVTCKVDYDRRRRIAPNHTATHLLNSALKEVLGDHVDQKGS 621 (936)
T ss_pred CCC-----CEEEEEEEEEE-CCEEEEEEEeccCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEeccc
Confidence 542 15899999997 899999987655789999999999999999999999999999999999999999999999
Q ss_pred eccCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEcCHHHHHH-hchhhhcCCCCCCcEEEEEECCccc-cc
Q 004366 649 LVAFDRLRFDFNFHRPLLDTELEEIERLINGWIGDANLLQTKVMALDDAKR-AGAIAMFGEKYGEQVKISSKMYVLW-RF 726 (759)
Q Consensus 649 ~v~~d~~R~DF~~~~~lt~eel~~IE~~vNeiI~~~~pV~~~~~~~eEA~~-~~~~~lf~eky~~~VRVV~Ig~~~~-d~ 726 (759)
+++++++||||++++++|++++.+||+.||++|++|+||++.+++++||++ .+++++|+++|++.||||+|++ + |.
T Consensus 622 ~v~~d~~r~Df~~~~~lt~eel~~IE~~vNe~I~~n~pV~~~~~~~eEA~~~~g~~~~f~e~y~~~VRVV~Ig~--~~d~ 699 (936)
T PLN02900 622 LVAFEKLRFDFSHGKPMTPEELREVESLVNEWIGDALPVEAKEMPLADAKRINGLRAVFGEKYPDPVRVVSVGG--VYSM 699 (936)
T ss_pred cccCCeEEEEeeCCCCCCHHHHHHHHHHHHHHHHhCCCeEEEEcCHHHHhhccChHhhcCCCCCCcEEEEEECC--ccce
Confidence 999999999999999999999999999999999999999999999999999 6889999999999999999998 7 99
Q ss_pred cccCCccc----ccCcEEEEeeecCCCCceeeee
Q 004366 727 LVCLWNFV----VEPMLTILLKSEPSKSFLSRVL 756 (759)
Q Consensus 727 ~~CgGTHV----eIG~IkIl~~~~~gk~~~~~~~ 756 (759)
++|||||| +||.|+|++.+..++|.+ |+.
T Consensus 700 elCGGTHV~nTgeIG~fkIls~~~~~~G~r-RIe 732 (936)
T PLN02900 700 ELCGGTHVSNTAEAEAFKLLSEEGIAKGIR-RIT 732 (936)
T ss_pred eCCCCCcCCccccCceEEEEEEeeecCCeE-EEE
Confidence 99999999 899999999999998875 553
No 3
>TIGR00344 alaS alanine--tRNA ligase. The model describes alanine--tRNA ligase. This enzyme catalyzes the reaction (tRNAala + L-alanine + ATP = L-alanyl-tRNAala + pyrophosphate + AMP).
Probab=100.00 E-value=4.7e-216 Score=1899.00 Aligned_cols=672 Identities=50% Similarity=0.838 Sum_probs=630.3
Q ss_pred HHHHHHHHHHhhCCCeeecCccCcC-CCCccceeccccccccccccccCCCCCCCcccccCcccCCCccccCCCCCcccc
Q 004366 52 SIRKRFLDFYASRGHKVLPSASLVP-EDPTVLLTIAGMLQFKPIFLGKVPRQVPRAATSQRCIRTNDVENVGRTSRHHTF 130 (759)
Q Consensus 52 eiR~~Fl~fF~~~gH~~v~s~slvp-~d~tllf~nAGm~~fk~~f~g~~~p~~~r~~~~QkCiR~nDldnVG~t~rH~Tf 130 (759)
|||++||+||++|||+++||||||| +|||||||||||+||||||+|.++||++|+||||||||+|||||||+|+|||||
T Consensus 1 eiR~~fl~fF~~~gH~~v~s~slvp~~dptllf~nAGm~~fk~~f~G~~~p~~~r~~~~QkCiR~nDld~VG~t~rHhTf 80 (851)
T TIGR00344 1 EIRQTFLDFFKEKGHQVIPSASLVPRNDPTLLLTNAGMAQFKPIFTGIVKPPSNRLVNAQPCIRLNDIENVGRTARHHTF 80 (851)
T ss_pred CHHHHHHHHHHhCCCEEcCCCCcCCCCCCCeeeeccchhhhhHHhcCCCCCCCCCcccccccccccchhhhcCCCcchhh
Confidence 6999999999999999999999999 799999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCccCcccHHHHHHHHHHhhhcccCCCCCceEEEEeCChHHHHHHHHHhcCCCCCceeccCCCCCccCCCCCCCC
Q 004366 131 FEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGATGPC 210 (759)
Q Consensus 131 FEMlGn~SfgdYfK~eai~~awefLt~~l~l~~~rl~vTv~~~D~e~~~iW~~~~g~~~~~I~~~~~~dNfW~~G~~Gpc 210 (759)
||||||||||||||+|||+|||||||++|||||+|||||||++|+||++||++ +|||++||++++.+||||+||+ |||
T Consensus 81 FEMlGnfSFgdYfK~eai~~awe~lT~~~~i~~~rl~vTv~~~D~ea~~iW~~-~g~~~~~i~~~~~~dNfW~~G~-Gpc 158 (851)
T TIGR00344 81 FEMLGNFSFGDYFKEEAIAFAWELLTSVLGLDKERLYVTVYEDDEEAYEIWEK-HGIPAERIIRCGDKDNFWDMGD-GPC 158 (851)
T ss_pred HHhhcccchhhhhHHHHHHHHHHHHhhhcCCChHHEEEEEcCCCHHHHHHHHh-cCCCHHHcccCCccCCcCCCCC-cCC
Confidence 99999999999999999999999999999999999999999999999999999 9999999999999999999999 999
Q ss_pred CCceEEEEecCCCCCCCCC-CC--CCCCceEEEeeeecccccccCCCccccCccCcccccchHHHHHHHHhCCCCccccc
Q 004366 211 GPCSEIYYDFHPDRGCSDV-DL--GDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERIARILQKVPNNYETD 287 (759)
Q Consensus 211 GPcsEI~~d~g~~~~~~~~-~~--~~~~r~lEiwNlVFmq~~~~~~g~~~~Lp~k~IDTGmGlERl~~vlqg~~s~ydtd 287 (759)
|||||||||+|+.+++... .+ .+|+|||||||||||||||++||+|+|||+||||||||||||+|||||++||||||
T Consensus 159 GPcsEi~yD~g~~~~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~~~~Lp~~~IDTGmGLERl~~vlqg~~snydtD 238 (851)
T TIGR00344 159 GPCTEIYYDRGEFVGGKPGEPEFFEENDRYVEVWNLVFMQFNRDPDGNYTPLPKKNIDTGMGLERFVAVLQGVPTNYDTD 238 (851)
T ss_pred ccCeEEEEecCcccCCCCCcccccCCCCcEEEEeeeeeEeeeecCCCceeeCCCCeeecCcCHHHHHHHHcCCCCcchhh
Confidence 9999999999998775321 22 58899999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHhCCCccCCc------c--ccccceEEeehhhhhHHhhhhCCCccCCCCCchHHHHHHHHHHHHHHHhC
Q 004366 288 LIFPIIKKASELANVSYAQSN------D--RTNLNLKIIGDHLRAIVYLLSDGVFPSNIGRGYVVRRLIRRAVRTGRLLG 359 (759)
Q Consensus 288 ~F~~li~~i~~~~~~~y~~~~------~--~~~~~~rviaDH~R~~~~~i~DG~~Psn~grGYvlRrilRRa~r~~~~lg 359 (759)
+|.|||++|++++|++|..+. + ..++++||||||+||++||||||++|||+|||||||||||||+|++++||
T Consensus 239 ~f~~ii~~i~~~~g~~y~~~~~~~~d~~~~~~~~~~rviaDH~R~~~f~i~DGv~PsN~grgYvlRrilRRa~r~~~~lg 318 (851)
T TIGR00344 239 IFLPLIEKIEEITGVKYDSNNAGIMDEKRVEDLRSLRVIADHTRALAFMLADGVVPSNEGRGYVLRRLIRRALRHGKKLG 318 (851)
T ss_pred hHHHHHHHHHHHhCCCCCcCccccccccccccchheeeehhhhhhhhhhhccCcccCCCCCchhHHHHHHHHHHHHHHhC
Confidence 999999999999999985322 0 23579999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCccccchHHHHHHHHHHhccCChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCC
Q 004366 360 IKGDGRGNLEGAFLPSIAEKAIELSTHIDSDVKAREQRILEELKREELRFVQTLERGEKLLDQMLADALSRTRESGSVPR 439 (759)
Q Consensus 360 ~~~~~~~~~~~~~l~~lv~~v~~~m~~~yPeL~~~~~~I~~ii~~EE~~F~~tL~~G~~~l~~~i~~~~~~~~~~g~~~~ 439 (759)
++.| ||++||+.|++.|++.||||.++++.|++||+.||++|.+||++|+++|+++++ ++ ++ +.
T Consensus 319 ~~~~--------fl~~lv~~~~~~m~~~ypel~~~~~~i~~ii~~Ee~~f~~tl~~G~~~l~~~~~----~~--~~--~~ 382 (851)
T TIGR00344 319 LKEA--------FLYKLVPTLIEVLGDYYPELKEKQEFVEQILELEEERFAKTLERGLRLFEKLLK----KL--GK--KE 382 (851)
T ss_pred CCch--------HHHHHHHHHHHHHhhhChHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----Hh--cC--Cc
Confidence 9999 999999999999999999999999999999999999999999999999999998 54 22 47
Q ss_pred CChHHHHHHhhcCCCChhhHHHHHHHcCCeeChhhHHHHHHHHHHHHHHhhcccccccCChhHHhhhCCCCccccccccc
Q 004366 440 LSGQDAFLLYDTFGFPVEITKEVAEEHGVSVDMKGFDIEMENQRRQSQAAHNAVKLSVDDSADLAEKIPDTEFLGYDTLS 519 (759)
Q Consensus 440 l~g~~af~LydTyGfP~dlt~~ia~e~g~~vd~~~F~~~~~~~r~~sr~~~~~~~~~~~~~~~l~~~~~~T~f~gY~~~~ 519 (759)
|||++||+||||||||+|||++||+|+|++||+++|+++|++||++||++++...... +...+.+..++|+|+||++.+
T Consensus 383 i~g~~af~LydTyGfP~dlt~~~a~e~g~~vd~~~F~~~~~~~~~~sr~~~~~~~~~~-~~~~~~~~~~~t~~l~Y~~~~ 461 (851)
T TIGR00344 383 LDGEDAFKLYDTYGFPVELTKEIAEERGLTVDIPGFETLMAEQRERSKAASQTISFEL-QEIALANVYPATEFLGYEDLE 461 (851)
T ss_pred cCHHHHHHHHHccCCCHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhhhhhcccccc-cHHHHhcccCCccccceeccc
Confidence 9999999999999999999999999999999999999999999999998764322111 112232223678999999999
Q ss_pred cceEEEEEEeCCeeeeeecCCCeEEEEecCcceecCCCCCCCCeEEEEeCCCcccccceEEEEEEEEeCCCEEEEEEEee
Q 004366 520 AKAIVESLLVNGKPVIKVSKGSDVEVLLNRTPFYAESGGQIGDYGFLYVTQGTNQQTAVVEVKDVKKSLGSVFVHKGTIR 599 (759)
Q Consensus 520 ~~akVl~i~~~~~~v~~~~~g~~~~VvLD~T~FYpEgGGQ~~D~G~I~~~~~~~~~~~~~~V~dV~k~~~g~ivH~~~~~ 599 (759)
++|+|+++..+++.|+++.+|+.++|+||+|+|||||||||+|+|+|..++. .++|.+|++. +|.++|++...
T Consensus 462 ~~a~V~~i~~~~~~v~~~~~g~~~~vvLd~T~FYpEgGGQp~D~G~I~~~~~------~~~V~dv~~~-~g~i~H~~~~~ 534 (851)
T TIGR00344 462 FEAKVIGLFEDGKPVDEAEAGQSVYVILDQTPFYAESGGQIGDTGYLIANDG------KFRVVDVQKP-NGVVFHFGEVE 534 (851)
T ss_pred ccEEEEEEEeCCccceecccCCceEEEEeCCCCCCCCCCCCCCEEEEecCCc------EEEEEEEEEE-CCEEEEEEEec
Confidence 9999999998888899999898999999999999999999999999986655 7999999998 89999998765
Q ss_pred ccccCCCCEEEEEEccccchHHHHhccHHHHHHHHHHhHhCCcceeeeeeccCCcEEEEEecCCCCCHHHHHHHHHHHHH
Q 004366 600 EGVLEVGREVEAIVDPKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLDTELEEIERLING 679 (759)
Q Consensus 600 ~g~l~~G~~V~~~VD~~rR~~~mr~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~~R~DF~~~~~lt~eel~~IE~~vNe 679 (759)
.+++++|++|.+.|||+||+.+|++|||+|||++||+++||.+++|+|++++++++||||++++++|++++.+||+.||+
T Consensus 535 ~g~l~~G~~V~~~VD~~rR~~~m~~HTAtHLL~aAL~~vlg~~v~q~Gs~v~~d~~r~Df~~~~~lt~eel~~IE~~vNe 614 (851)
T TIGR00344 535 GGSLKVGDKVIAVIDEKRRLRIMRNHSATHLLHAALQKVLGNHVWQAGSLVSVKKLRFDFSHYRALTREELEKIEDLVNE 614 (851)
T ss_pred cCCCCCCCEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCceEeccCcccCCcEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999889999999999999999
Q ss_pred HHhcCCCEEEEEcCHHHHHHhchhhhcCCCCCCcEEEEEECCccccccccCCccc----ccCcEEEEeeecCCCCc
Q 004366 680 WIGDANLLQTKVMALDDAKRAGAIAMFGEKYGEQVKISSKMYVLWRFLVCLWNFV----VEPMLTILLKSEPSKSF 751 (759)
Q Consensus 680 iI~~~~pV~~~~~~~eEA~~~~~~~lf~eky~~~VRVV~Ig~~~~d~~~CgGTHV----eIG~IkIl~~~~~gk~~ 751 (759)
+|++|+||.+.+++++||++.+++++|+++|++.||||+||+ +|.++|||||| +||.|+|++.+..++|.
T Consensus 615 lI~~n~pV~~~~~~~eeA~~~~~~~~~~e~y~~~VRVV~Ig~--~d~e~CgGTHV~nTgeIg~~kI~~~~~~~~G~ 688 (851)
T TIGR00344 615 QILANIPIKVIFMDLDEAKAKGAFALFGEKYGEKVRVVSVGD--VSVELCGGTHVRNTGEIGLFKIVKESGIAAGV 688 (851)
T ss_pred HHHhCCceEEEEeCHHHHHhcchhhhcCCCCCCeEEEEEECC--eeccCCCCCccCChhhCeEEEEEEEeEecCCe
Confidence 999999999999999999999999999999999999999998 89999999999 89999999999888885
No 4
>PRK00252 alaS alanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.9e-213 Score=1883.56 Aligned_cols=675 Identities=51% Similarity=0.868 Sum_probs=635.4
Q ss_pred CCChHHHHHHHHHHHhhCCCeeecCccCcC-CCCccceeccccccccccccccCCCCCCCcccccCcccCCCccccCCCC
Q 004366 47 PSSGDSIRKRFLDFYASRGHKVLPSASLVP-EDPTVLLTIAGMLQFKPIFLGKVPRQVPRAATSQRCIRTNDVENVGRTS 125 (759)
Q Consensus 47 ~~~~~eiR~~Fl~fF~~~gH~~v~s~slvp-~d~tllf~nAGm~~fk~~f~g~~~p~~~r~~~~QkCiR~nDldnVG~t~ 125 (759)
+||++|||++||+||++|||+++||||||| +|||||||||||+||||||+|.++||++|+||||||||+|||||||+|+
T Consensus 1 ~~~~~eiR~~fl~fF~~~~H~~v~s~~lvp~~d~~llf~nAGm~~fk~~f~g~~~p~~~r~~~~QkCiR~nDld~VG~t~ 80 (865)
T PRK00252 1 MMTSAEIRQKFLDFFESKGHTVVPSASLVPKNDPTLLFTNAGMVQFKDYFLGQEKPPYPRATTSQKCIRTNDLENVGYTA 80 (865)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEecCCCcCCCCCCCeeeeccchhhhhHHhcCCCCCCCCCcccccccccccchhhccCCC
Confidence 489999999999999999999999999999 7999999999999999999999999999999999999999999999999
Q ss_pred CcccccccccCCccCcccHHHHHHHHHHhhhcccCCCCCceEEEEeCChHHHHHHHHHhcCCCCCceeccCCCCCccCCC
Q 004366 126 RHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSG 205 (759)
Q Consensus 126 rH~TfFEMlGn~SfgdYfK~eai~~awefLt~~l~l~~~rl~vTv~~~D~e~~~iW~~~~g~~~~~I~~~~~~dNfW~~G 205 (759)
|||||||||||||||||||+|||+|||||||++|||||+|||||||.+|+||++||++.+|||++||++++.+||||+||
T Consensus 81 rHhTfFEMlGn~sfgdYfK~eai~~awe~lt~~~~i~~~~l~vt~~~~D~e~~~iW~~~~g~~~~~i~~~~~~dNfW~~G 160 (865)
T PRK00252 81 RHHTFFEMLGNFSFGDYFKEEAIEWAWELLTSVLGLPKEKLYVTVYEDDDEAYDIWKKEIGVPPERIIRIGKKDNFWSMG 160 (865)
T ss_pred CchHHHHHhcccchhhhhHHHHHHHHHHHHHHHhCCCHHHEEEEEcCCCHHHHHHHHhccCCCHHHeecCCccCCccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCceEEEEecCCCCCCCCC--CCCCCCceEEEeeeecccccccCCCccccCccCcccccchHHHHHHHHhCCCCc
Q 004366 206 ATGPCGPCSEIYYDFHPDRGCSDV--DLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERIARILQKVPNN 283 (759)
Q Consensus 206 ~~GpcGPcsEI~~d~g~~~~~~~~--~~~~~~r~lEiwNlVFmq~~~~~~g~~~~Lp~k~IDTGmGlERl~~vlqg~~s~ 283 (759)
+|||||||||||||+|+.++++.. ++.+++|||||||||||||||+++|+|.|||+||||||||||||+|||||++||
T Consensus 161 ~~GpcGPcsEi~~d~g~~~~~~~~~~~~~~~~~~lEiwNlVF~q~~~~~~g~~~~Lp~~~iDTG~GlER~~~ilq~~~sn 240 (865)
T PRK00252 161 DTGPCGPCSEIFYDRGEEYWGGPPGSPEEDGDRYIEIWNLVFMQFNRDEDGNLTPLPKKNIDTGMGLERIAAVLQGVHSN 240 (865)
T ss_pred CCcCCCCCeEEEEecCcccCCCCCCCCcCCCCcEEEEeeeeeEeeeecCCCceeeCCCCeeecCcCHHHHHHHHcCCCCc
Confidence 999999999999999998854333 347889999999999999999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHhCCCccCCccccccceEEeehhhhhHHhhhhCCCccCCCCCchHHHHHHHHHHHHHHHhCCCCC
Q 004366 284 YETDLIFPIIKKASELANVSYAQSNDRTNLNLKIIGDHLRAIVYLLSDGVFPSNIGRGYVVRRLIRRAVRTGRLLGIKGD 363 (759)
Q Consensus 284 ydtd~F~~li~~i~~~~~~~y~~~~~~~~~~~rviaDH~R~~~~~i~DG~~Psn~grGYvlRrilRRa~r~~~~lg~~~~ 363 (759)
||||+|.|||++|++++|++|+ .++||||||||+||++|||+||++|||+|||||||||||||+|++++||++.|
T Consensus 241 ydtd~f~~~i~~i~~~~~~~y~-----~~~a~rviaDH~R~~~f~i~DG~~Psn~grgYvlRrilRRa~r~~~~lg~~~~ 315 (865)
T PRK00252 241 YETDLFRPLIKAIEELTGVKYE-----DDVSFRVIADHIRAVAFLIADGVLPSNEGRGYVLRRILRRAVRHGRLLGIKEP 315 (865)
T ss_pred chhhhHHHHHHHHHHHhCCCCC-----CCceEEEEcchHHHHHHHHccCcccCCCCcchHHHHHHHHHHHHHHHhCCCch
Confidence 9999999999999999999985 36799999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccchHHHHHHHHHHhccCChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCChH
Q 004366 364 GRGNLEGAFLPSIAEKAIELSTHIDSDVKAREQRILEELKREELRFVQTLERGEKLLDQMLADALSRTRESGSVPRLSGQ 443 (759)
Q Consensus 364 ~~~~~~~~~l~~lv~~v~~~m~~~yPeL~~~~~~I~~ii~~EE~~F~~tL~~G~~~l~~~i~~~~~~~~~~g~~~~l~g~ 443 (759)
||++|||.|++.|++.||||.++++.|++||+.||++|.+||++|+++|+++++ +.++ + +.|||+
T Consensus 316 --------~l~~lv~~~~~~~~~~ypel~~~~~~i~~ii~~Ee~~f~~tl~~G~~~~~~~~~----~~~~-~--~~l~g~ 380 (865)
T PRK00252 316 --------FLYKLVPVVIDEMGDAYPELKEKQDLIEKVLKAEEERFLKTLERGLKLLEEALA----KLKA-G--KVLSGE 380 (865)
T ss_pred --------HHHHHHHHHHHHHhhhChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hccC-C--CccCHH
Confidence 999999999999999999999999999999999999999999999999999998 4322 2 479999
Q ss_pred HHHHHhhcCCCChhhHHHHHHHcCCeeChhhHHHHHHHHHHHHHHhhcccccccCChhHHhhhCCCCccccccccccceE
Q 004366 444 DAFLLYDTFGFPVEITKEVAEEHGVSVDMKGFDIEMENQRRQSQAAHNAVKLSVDDSADLAEKIPDTEFLGYDTLSAKAI 523 (759)
Q Consensus 444 ~af~LydTyGfP~dlt~~ia~e~g~~vd~~~F~~~~~~~r~~sr~~~~~~~~~~~~~~~l~~~~~~T~f~gY~~~~~~ak 523 (759)
+||+||||||||+|||++||+++|++||+++|+++|++||++||+.++.... ......+.... +|+|+||+..+++|+
T Consensus 381 ~~f~LydtyGfP~dlt~~~a~e~g~~vd~~~f~~~~~~~~~~s~~~~~~~~~-~~~~~~~~~~~-~t~f~~Y~~~~~~a~ 458 (865)
T PRK00252 381 DAFKLYDTYGFPLDLTAEIARERGLTVDEEGFEAAMEEQRERARAARKFKGD-YNALEELLDDL-ATEFVGYDTLEAEAK 458 (865)
T ss_pred HHHHHHhccCCCHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHHHhhhhcccc-hhHHHHHhhcC-CCeeeeeeeccccEE
Confidence 9999999999999999999999999999999999999999999876543210 11112232222 689999999999999
Q ss_pred EEEEEeCCeeeeeecCCCeEEEEecCcceecCCCCCCCCeEEEEeCCCcccccceEEEEEEEEeCCCEEEEEEEeecccc
Q 004366 524 VESLLVNGKPVIKVSKGSDVEVLLNRTPFYAESGGQIGDYGFLYVTQGTNQQTAVVEVKDVKKSLGSVFVHKGTIREGVL 603 (759)
Q Consensus 524 Vl~i~~~~~~v~~~~~g~~~~VvLD~T~FYpEgGGQ~~D~G~I~~~~~~~~~~~~~~V~dV~k~~~g~ivH~~~~~~g~l 603 (759)
|++++.+++.|+++.+|+.++|+||+|+|||||||||+|+|+|.. +. .+.|.+|++..+|.++|++....+.+
T Consensus 459 v~~i~~~~~~~~~~~~g~~~~vvLd~T~FYpegGGQ~~D~G~I~~-~~------~~~V~~v~~~~~g~i~H~~~~~~~~l 531 (865)
T PRK00252 459 VLALFVDGESVDSAKAGEEVEVVLDKTPFYAESGGQVGDTGVIED-GG------VFEVTDTQKPPNGLIVHRGKVEEGEL 531 (865)
T ss_pred EEEEEeCCceeeeccCCCeEEEEEeCCCCCCCCCCCCCCEEEEee-Cc------EEEEEEEEEccCCEEEEEEEeccCCC
Confidence 999998888899999999999999999999999999999999987 55 79999999965799999997655779
Q ss_pred CCCCEEEEEEccccchHHHHhccHHHHHHHHHHhHhCCcceeeeeeccCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhc
Q 004366 604 EVGREVEAIVDPKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLDTELEEIERLINGWIGD 683 (759)
Q Consensus 604 ~~G~~V~~~VD~~rR~~~mr~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~~R~DF~~~~~lt~eel~~IE~~vNeiI~~ 683 (759)
++|++|.++|||+||+.+|++|||+|||++||+++||.+++|+|++++++++||||++++++|++++.+||+.||++|++
T Consensus 532 ~~G~~V~~~ID~~rR~~~m~~HTa~HLL~~al~~~lg~~v~q~Gs~~~~~~~r~Df~~~~~lt~eel~~IE~~vN~lI~~ 611 (865)
T PRK00252 532 KVGDEVTAEVDEERRRAIARNHSATHLLHAALREVLGEHVTQAGSLVAPDRLRFDFSHFEALTPEELRKIEDLVNEKIRE 611 (865)
T ss_pred CCCCEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhhhheEeccCcccCCeEEEEeecCCCCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999998899999999999999999999
Q ss_pred CCCEEEEEcCHHHHHHhchhhhcCCCCCCcEEEEEECCccccccccCCccc----ccCcEEEEeeecCCCCce
Q 004366 684 ANLLQTKVMALDDAKRAGAIAMFGEKYGEQVKISSKMYVLWRFLVCLWNFV----VEPMLTILLKSEPSKSFL 752 (759)
Q Consensus 684 ~~pV~~~~~~~eEA~~~~~~~lf~eky~~~VRVV~Ig~~~~d~~~CgGTHV----eIG~IkIl~~~~~gk~~~ 752 (759)
++||++.+++++||++.+++++|+++|++.||||+|++ +|.++|||||| +||.|+|++.+..++|.+
T Consensus 612 n~pV~~~~~~~~eA~~~~~~~~~~~~y~~~VRVV~Ig~--~d~~~CgGTHV~nTgeIg~~kI~~~~~~~~g~~ 682 (865)
T PRK00252 612 NLPVETEEMSIEEAKKMGAMALFGEKYGDEVRVVSIGD--FSIELCGGTHVSNTGDIGLFKIVSESGVAAGVR 682 (865)
T ss_pred CCCeEEEEeCHHHHHhCCchhhccccCCCeEEEEEECC--ceeeCCCCCccCCcccCeEEEEEEEeeecCCeE
Confidence 99999999999999999999999999999999999998 89999999999 899999999999999863
No 5
>KOG0188 consensus Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.2e-208 Score=1715.39 Aligned_cols=679 Identities=40% Similarity=0.685 Sum_probs=632.1
Q ss_pred CChHHHHHHHHHHHhhCCCeeecCccCcC-CCCccceeccccccccccccccCCCCCCCcccccCcccC----CCccccC
Q 004366 48 SSGDSIRKRFLDFYASRGHKVLPSASLVP-EDPTVLLTIAGMLQFKPIFLGKVPRQVPRAATSQRCIRT----NDVENVG 122 (759)
Q Consensus 48 ~~~~eiR~~Fl~fF~~~gH~~v~s~slvp-~d~tllf~nAGm~~fk~~f~g~~~p~~~r~~~~QkCiR~----nDldnVG 122 (759)
||++|||++||+||+++.|++|+|||||| +||||||+|||||||||+|||. -.+++|++|+|||||+ ||||+||
T Consensus 2 ~ta~evR~tFldfF~~k~H~~V~SSsViP~dDpTLLFaNAGMNQFKpifLgt-~a~lkRa~NsQKCIRAGGKHNDLdDVG 80 (895)
T KOG0188|consen 2 LTASEVRKTFLDFFKSKHHKIVHSSSVIPFDDPTLLFANAGMNQFKPIFLGT-MAKLKRAANSQKCIRAGGKHNDLDDVG 80 (895)
T ss_pred ccHHHHHHHHHHHHHhcCceEeccCCcccCCCCeeEEeccchhhcchhhhhc-hhhhHhhhhhhhHHhccCCcCChhHhc
Confidence 79999999999999999999999999999 8999999999999999999998 5688999999999999 9999999
Q ss_pred CCCCcccccccccCCccCcccHHHHHHHHHHhhhcccCCCCCceEEEEeCC--------hHHHHHHHHHhcCCCCCceec
Q 004366 123 RTSRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPANRLWISVYED--------DDEAFEIWNKEVGVPVEHIKR 194 (759)
Q Consensus 123 ~t~rH~TfFEMlGn~SfgdYfK~eai~~awefLt~~l~l~~~rl~vTv~~~--------D~e~~~iW~~~~g~~~~~I~~ 194 (759)
+|.+||||||||||||||||||+|||.|||||||++||||++|||||||+| |.||++||++ +|+|++||++
T Consensus 81 kD~yHhTfFEMlGNWSFGdYfK~Eac~~AwelLt~vygi~~dRLYVtYF~Gde~~Gl~~D~E~r~iW~~-~Gvp~srILp 159 (895)
T KOG0188|consen 81 KDFYHHTFFEMLGNWSFGDYFKEEACAWAWELLTFVYGIPTDRLYVTYFGGDEKLGLEPDLECREIWNE-LGVPDSRILP 159 (895)
T ss_pred hhccccCchhhcCCCCcchHHHHHHHHHHHHHHHHhhcCCCceEEEEEecCccccCCCCCcHHHHHHHH-cCCChhhccC
Confidence 999999999999999999999999999999999999999999999999996 7899999997 7999999999
Q ss_pred cCCCCCccCCCCCCCCCCceEEEEecCCCCCCCCCCCCCCCceEEEeeeecccccccCCCccccCccCcccccchHHHHH
Q 004366 195 MGADDNFWNSGATGPCGPCSEIYYDFHPDRGCSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERIA 274 (759)
Q Consensus 195 ~~~~dNfW~~G~~GpcGPcsEI~~d~g~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~~~~Lp~k~IDTGmGlERl~ 274 (759)
|+++||||+||+||||||||||||||.+++++....+.|+++++||||||||||||.+||++.|||+||||||||||||+
T Consensus 160 ~~~kDNFWEMGdtGPCGPCtEIHyDriG~r~a~~LVN~ddp~v~EiWNlVFiq~NRe~dGsL~pLp~khIDTGMGfERLv 239 (895)
T KOG0188|consen 160 FGMKDNFWEMGDTGPCGPCTEIHYDRIGGRDAVKLVNHDDPDVLEIWNIVFIQYNREADGSLKPLPKKHIDTGMGFERLV 239 (895)
T ss_pred CccccchhhhcCCCCCCcchhhhhhhhcCcchHHHhcCCCcCceeeeeeeeeeeccccCCccccCcccccccccCHHHHH
Confidence 99999999999999999999999999999988888889999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCcccccccHHHHHHHHHHhCCCcc-CCccccccceEEeehhhhhHHhhhhCCCccCCCCCchHHHHHHHHHHH
Q 004366 275 RILQKVPNNYETDLIFPIIKKASELANVSYA-QSNDRTNLNLKIIGDHLRAIVYLLSDGVFPSNIGRGYVVRRLIRRAVR 353 (759)
Q Consensus 275 ~vlqg~~s~ydtd~F~~li~~i~~~~~~~y~-~~~~~~~~~~rviaDH~R~~~~~i~DG~~Psn~grGYvlRrilRRa~r 353 (759)
+|||++.||||||+|+||+++|++.++.+|. ++.+.+|+||||+|||+||+++|||||.+|+|+|||||||||||||+|
T Consensus 240 sVlQnk~SNYDTDlFtPif~aiq~~~~~~YtG~d~d~~D~AyRVvADH~RtlTvalsDG~~Pdn~GrgyvLRRILRRavr 319 (895)
T KOG0188|consen 240 SVLQNKTSNYDTDLFTPIFEAIQEGTGARYTGEDADGIDTAYRVVADHARTLTVALSDGGVPDNTGRGYVLRRILRRAVR 319 (895)
T ss_pred HHHhcccccccchhhHHHHHHHHHhcCCCccCCccccchhhHHHHHHHhhhhheeeecCCCCCCCCChhHHHHHHHHHHH
Confidence 9999999999999999999999999999996 455689999999999999999999999999999999999999999999
Q ss_pred HHHH-hCCCCCCCCCccccchHHHHHHHHHHhccCChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004366 354 TGRL-LGIKGDGRGNLEGAFLPSIAEKAIELSTHIDSDVKAREQRILEELKREELRFVQTLERGEKLLDQMLADALSRTR 432 (759)
Q Consensus 354 ~~~~-lg~~~~~~~~~~~~~l~~lv~~v~~~m~~~yPeL~~~~~~I~~ii~~EE~~F~~tL~~G~~~l~~~i~~~~~~~~ 432 (759)
|++. ||++.. ||.+|||+|++.||++||||+.+.+.|.++|..||++|++||++|.++|++.+. ++.
T Consensus 320 ya~e~l~~~~g--------~~~~LVpvvv~~lgd~fPEl~~~~~~v~diineEE~~F~ktl~rg~~~f~r~~~----~~~ 387 (895)
T KOG0188|consen 320 YAHEKLNAPPG--------FFSTLVPVVVETLGDAFPELKRDPQHVIDIINEEEAQFLKTLDRGRKLFDRVAR----ELG 387 (895)
T ss_pred HHHHHhCCCcc--------hhhhhhHHHHHHHhhhchhhhcCHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHH----hcC
Confidence 9986 999987 999999999999999999999999999999999999999999999999999998 654
Q ss_pred cCCCCCCCChHHHHHHhhcCCCChhhHHHHHHHcCCeeChhhHHHHHHHHHHHHHHhhcccccccCChhHHhhhCCCCc-
Q 004366 433 ESGSVPRLSGQDAFLLYDTFGFPVEITKEVAEEHGVSVDMKGFDIEMENQRRQSQAAHNAVKLSVDDSADLAEKIPDTE- 511 (759)
Q Consensus 433 ~~g~~~~l~g~~af~LydTyGfP~dlt~~ia~e~g~~vd~~~F~~~~~~~r~~sr~~~~~~~~~~~~~~~l~~~~~~T~- 511 (759)
++ ++|||++||+||||||||+|||++||+|+|++||+++|+++.++.+++|+++.+.... . ..+.+.+.+|+|.
T Consensus 388 ~s---~tipGd~~w~LydTyGfPvdlt~lmAee~gl~iD~~~fE~ar~~A~~~Sk~~~~~~~~-i-~ldvl~el~p~TdD 462 (895)
T KOG0188|consen 388 SS---KTIPGDVAWRLYDTYGFPVDLTELMAEEKGLKIDETGFEAARQEAQEKSKGAGGGKLS-I-DLDVLSELVPPTDD 462 (895)
T ss_pred CC---CcCchHHHHHHHhhcCCcHHHHHHHHHHhCCccCchhHHHHHHHHHHHHhccCCCCCc-c-cHHHHHhhCCCCCC
Confidence 42 6899999999999999999999999999999999999999999999999876654221 1 1122333357763
Q ss_pred cccc-cccccceEEEEEEeCCeeeeeecCCCeEEEEecCcceecCCCCCCCCeEEEEeCCCcccccceEEEEEEEEeCCC
Q 004366 512 FLGY-DTLSAKAIVESLLVNGKPVIKVSKGSDVEVLLNRTPFYAESGGQIGDYGFLYVTQGTNQQTAVVEVKDVKKSLGS 590 (759)
Q Consensus 512 f~gY-~~~~~~akVl~i~~~~~~v~~~~~g~~~~VvLD~T~FYpEgGGQ~~D~G~I~~~~~~~~~~~~~~V~dV~k~~~g 590 (759)
...| +...++++|+++..++.+++++..|+++.||||+|+||+|+|||.+|+|.|...+. +.-.+.|..++- +|
T Consensus 463 s~KY~~~~~~~~~il~l~~e~~~v~~~~~g~~~givldktnFYaEqGGQ~~D~G~lv~~~~---~~~~fnV~~~~~--gg 537 (895)
T KOG0188|consen 463 SFKYNEFGVCKTRILALYREDQFVESIPKGQECGIVLDKTNFYAEQGGQIYDTGKLVIDGD---EDFVFNVKRVQV--GG 537 (895)
T ss_pred ccccccCccchhhhhhhhcCCceeeecCCCceEEEEeecceeehhcCCcccccceEEEecC---ccceeehhhccc--CC
Confidence 4467 66789999999999999999999999999999999999999999999999998765 112455655554 69
Q ss_pred EEEEEEEeeccccCCCCEEEEEEccccchHHHHhccHHHHHHHHHHhHhCCcceeeeeeccCCcEEEEEecCCCCCHHHH
Q 004366 591 VFVHKGTIREGVLEVGREVEAIVDPKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLDTEL 670 (759)
Q Consensus 591 ~ivH~~~~~~g~l~~G~~V~~~VD~~rR~~~mr~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~~R~DF~~~~~lt~eel 670 (759)
+++|.+... +.|++|++|.+.+|.+||+.+|+||||||||++|||+++ ..+.|+||+|.||++||||++.+++|.||+
T Consensus 538 ~vvh~g~l~-~~l~vgdqv~~~~De~rR~~im~nHTaTHlLN~aLr~~l-~~t~QkGSlV~pdklRfDf~~k~~lt~eql 615 (895)
T KOG0188|consen 538 YVVHIGVLE-GDLSVGDQVELHVDEERRQLIMRNHTATHLLNFALRQVL-KGTDQKGSLVAPDKLRFDFSTKGALTKEQL 615 (895)
T ss_pred EEEEEeeec-cccccchhHHHHhhHHHHHHHhhcchHHHHHHHHHHHhc-ccccccccccChhHeeeecccCCCCCHHHH
Confidence 999999874 899999999999999999999999999999999999999 458899999999999999999989999999
Q ss_pred HHHHHHHHHHHhcCCCEEEEEcCHHHHHHh-chhhhcCCCCCCcEEEEEECCc-cccccccCCccc----ccCcEEEEee
Q 004366 671 EEIERLINGWIGDANLLQTKVMALDDAKRA-GAIAMFGEKYGEQVKISSKMYV-LWRFLVCLWNFV----VEPMLTILLK 744 (759)
Q Consensus 671 ~~IE~~vNeiI~~~~pV~~~~~~~eEA~~~-~~~~lf~eky~~~VRVV~Ig~~-~~d~~~CgGTHV----eIG~IkIl~~ 744 (759)
+++|+.+|++|.++.+|...++|+++|++. +.+++|+|.|+++||||++|.. ..+++.|||||+ +||.+.|.+.
T Consensus 616 ~~vE~~~ne~I~~~~~V~~~e~~l~~ak~i~glr~v~~E~YPdpVRVVsvg~~~~~svE~CgGTH~~~t~~i~~fvI~se 695 (895)
T KOG0188|consen 616 KKVEDKINEFIQKNAPVYAKELPLAEAKKIPGLRAVFDEVYPDPVRVVSVGAGQLTSVEFCGGTHLTNTSHIGDFVIVSE 695 (895)
T ss_pred HHHHHHHHHHHhcCCceEEEecCHHHHhcCCCcccccCCccCCceEEEEeccccccceeecCCcccccccccceEEEech
Confidence 999999999999999999999999999997 6788999999999999999862 267899999999 8999999999
Q ss_pred ecCCCCce
Q 004366 745 SEPSKSFL 752 (759)
Q Consensus 745 ~~~gk~~~ 752 (759)
+-.+||-|
T Consensus 696 ~~iakgir 703 (895)
T KOG0188|consen 696 EGIAKGIR 703 (895)
T ss_pred hhhhhcee
Confidence 88888765
No 6
>TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase. This family of alanyl-tRNA synthetases is limited to the archaea, and is a subset of those sequences identified by the model pfam07973 covering the second additional domain (SAD) of alanyl and threonyl tRNA synthetases.
Probab=100.00 E-value=1.2e-192 Score=1702.69 Aligned_cols=645 Identities=31% Similarity=0.507 Sum_probs=592.4
Q ss_pred CCcccccceeeeccCCCccccCcCCCc----CCCchhhcccCCCCCCChHHHHHHHHHHHhhCCCeeecCccCcCC-CCc
Q 004366 6 PSILPCGHFLFKGATGVPSARSTSASV----QPLTEEVEDKSQDFPSSGDSIRKRFLDFYASRGHKVLPSASLVPE-DPT 80 (759)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~eiR~~Fl~fF~~~gH~~v~s~slvp~-d~t 80 (759)
+.|-.||.+|||.+.-++.|.+.+-+. +.|+. .++||++|||++||+||+++||+++|||||||+ |++
T Consensus 17 ~~c~~c~~~fwt~~~~r~~cgd~~c~~y~fi~~~~~-------~~~~~~~eiR~~fl~FF~~~gH~~v~s~pvvprw~dD 89 (902)
T TIGR03683 17 KQCQVCGSYFWTLDPERETCGDAPCDEYSFIGNPIF-------SKKYTLDEMREAFLSFFEKHGHTRIKRYPVVARWRDD 89 (902)
T ss_pred eECcccCCccccCCCCcCCCCCCCCccceecCCCCc-------CCCCCHHHHHHHHHHHHHhCCCEEeCCcCcCcCCCCC
Confidence 579999999999999999999866654 22222 246999999999999999999999999999994 667
Q ss_pred cceecccccccccccc-ccCCCCCCCcccccCcccCCCccccCCCCCcccccccccCCccC-----cccHHHHHHHHHHh
Q 004366 81 VLLTIAGMLQFKPIFL-GKVPRQVPRAATSQRCIRTNDVENVGRTSRHHTFFEMLGNFSFG-----DYFKKEAIQWAWEF 154 (759)
Q Consensus 81 llf~nAGm~~fk~~f~-g~~~p~~~r~~~~QkCiR~nDldnVG~t~rH~TfFEMlGn~Sfg-----dYfK~eai~~awef 154 (759)
||||||||+||||||+ |.++||++|+|+||||||+|||||||+|+||||||||||||||| ||||+|||+|||||
T Consensus 90 llft~Agm~~Fkp~f~~G~~~pp~~r~~~sQkCiR~nDldnVG~t~rH~TfFEMlGn~sFg~~~~~dYfK~EaI~~a~e~ 169 (902)
T TIGR03683 90 VYLTIASIADFQPWVTSGLVPPPANPLVISQPCIRLNDIDNVGRTGRHLTCFEMMAHHAFNYPDKEIYWKDETVEYCFEF 169 (902)
T ss_pred eeEeecchhhhhHhhcCCCCCCCCCCceeccccccccccccccCCCCcchhhhhccceeeCCCCcccCcHHHHHHHHHHH
Confidence 9999999999999998 99999999999999999999999999999999999999999999 99999999999999
Q ss_pred hhcccCCCCCceEEEEeCChHHHHHHHHHhcCCCCCceeccCCCCCccCCCCCCCCCCceEEEEecCCCCCCCCCCCCCC
Q 004366 155 STVEFGLPANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGATGPCGPCSEIYYDFHPDRGCSDVDLGDD 234 (759)
Q Consensus 155 Lt~~l~l~~~rl~vTv~~~D~e~~~iW~~~~g~~~~~I~~~~~~dNfW~~G~~GpcGPcsEI~~d~g~~~~~~~~~~~~~ 234 (759)
| ++||||++||. + +||||+|| ||||||||||| +|
T Consensus 170 l-~~lgi~~~~i~--------------------------~---~enfW~~G--GpcGPcsEi~~-~g------------- 203 (902)
T TIGR03683 170 L-EELGIDPEEIT--------------------------Y---KESPWEGG--GNAGPCFEVIV-GG------------- 203 (902)
T ss_pred H-HHcCCCHHHee--------------------------e---cCCccCCC--CCCCCceeeee-Cc-------------
Confidence 9 99999888752 1 69999999 99999999999 33
Q ss_pred CceEEEeeeecccccccC-------CCccccCccCcccccchHHHHHHHHhCCCCcccccccHHHHHHHHHHhCCCccCC
Q 004366 235 TRFIEFYNLVFMQYNKKD-------DGSLEPLKQKNIDTGLGLERIARILQKVPNNYETDLIFPIIKKASELANVSYAQS 307 (759)
Q Consensus 235 ~r~lEiwNlVFmq~~~~~-------~g~~~~Lp~k~IDTGmGlERl~~vlqg~~s~ydtd~F~~li~~i~~~~~~~y~~~ 307 (759)
|||||||||||+|++ ||+|+|||+||||||||||||+|||||+|||||| +|.|||++|++++|++|..+
T Consensus 204 ---lEiwnlVFmq~~~~~~~~~~~~~g~~~~Lp~k~VDTG~GLER~~~v~qg~~t~ydt-~f~~ii~~i~~~~g~~y~~~ 279 (902)
T TIGR03683 204 ---LELATLVFMQYEEDKEGEIEIKGGRYSEMPLKIVDTGYGLERFVWASQGTPTAYDA-IFPEIVDKLKENAGVELIDE 279 (902)
T ss_pred ---EeeeeeeeeeeccccccccccCCCeeeeCCCCceecCCCHHHHHHHHcCCCchHHH-HHHHHHHHHHHHhCCCcccc
Confidence 999999999999998 8999999999999999999999999999999999 99999999999999988532
Q ss_pred c---------------ccc---------------------c-----cceEEeehhhhhHHhhhhCCCccCCCCCchHHHH
Q 004366 308 N---------------DRT---------------------N-----LNLKIIGDHLRAIVYLLSDGVFPSNIGRGYVVRR 346 (759)
Q Consensus 308 ~---------------~~~---------------------~-----~~~rviaDH~R~~~~~i~DG~~Psn~grGYvlRr 346 (759)
. +.. + .++||||||+||++|||+||++|||+||||||||
T Consensus 280 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~rvIaDH~R~~~f~i~DGv~PsN~grGYvlRr 359 (902)
T TIGR03683 280 EILAENARLAGMMDIEDEEDLRELRKKVADKIGIDVEELEKIIAPVERIYAIADHTRCLAFMLGDGIVPSNVKEGYLARL 359 (902)
T ss_pred hhhhhhhhhccccCccccchhhHHhhhhhhhcccchhhhhhhccccceEEEEcchHHHHHHHHhcCCccCCCCcchHHHH
Confidence 0 010 2 5899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCCCCccccchHHHHHHHHHHhccCChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004366 347 LIRRAVRTGRLLGIKGDGRGNLEGAFLPSIAEKAIELSTHIDSDVKAREQRILEELKREELRFVQTLERGEKLLDQMLAD 426 (759)
Q Consensus 347 ilRRa~r~~~~lg~~~~~~~~~~~~~l~~lv~~v~~~m~~~yPeL~~~~~~I~~ii~~EE~~F~~tL~~G~~~l~~~i~~ 426 (759)
|||||+|++++||++.| |++||+.+++.|++.||||.++++.|++||+.||++|.+||++|.++|+++++
T Consensus 360 ilRRa~r~~~~lg~~~~---------l~~lv~~~~~~~~~~ypel~~~~~~I~~ii~~Ee~~f~~Tl~~G~~~~~~~~~- 429 (902)
T TIGR03683 360 VIRRTLRLMRELGLDIP---------LSDLVEMQLEELKKIYPELKENKDYILDILDLEEEKYRETLERGRRIVERLLK- 429 (902)
T ss_pred HHHHHHHHHHHhCCCcc---------HHHHHHHHHHHHhhhChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 99999999999999988 99999999999999999999999999999999999999999999999999987
Q ss_pred HHhhhhcCCCCCCCChHHHHHHhhcCCCChhhHHHHHHHcCCeeChh-hHHHHHHHHHHHHHHhhcccccccCChhHHhh
Q 004366 427 ALSRTRESGSVPRLSGQDAFLLYDTFGFPVEITKEVAEEHGVSVDMK-GFDIEMENQRRQSQAAHNAVKLSVDDSADLAE 505 (759)
Q Consensus 427 ~~~~~~~~g~~~~l~g~~af~LydTyGfP~dlt~~ia~e~g~~vd~~-~F~~~~~~~r~~sr~~~~~~~~~~~~~~~l~~ 505 (759)
+ + +.|||++||+||||||||+|||++||+++|++||++ +|+++|++||++|+++... ... ......
T Consensus 430 ---~----~--~~i~g~~~f~LyDTyGfP~dl~~eia~e~g~~vd~~~~F~~~~~~~~~~~~~~~~~-~~~---~~~~~~ 496 (902)
T TIGR03683 430 ---T----K--KEIPLDDLIELYDSHGIPPEIVKEIAAELGAEVEIPDNFYSIVAERHEKEEKEEEL-PKD---YEERAK 496 (902)
T ss_pred ---c----C--CcCCHHHHHHHHHccCCCHHHHHHHHHHcCCcccCCccHHHHHHHHHHHHHhcccc-ccc---hhHHHh
Confidence 2 2 469999999999999999999999999999999998 9999999999999875321 111 111223
Q ss_pred hCCCCccccccc---cccceEEEEEEeCCeeeeeecCCCeEEEEecCcceecCCCCCCCCeEEEEeCCCcccccceEEEE
Q 004366 506 KIPDTEFLGYDT---LSAKAIVESLLVNGKPVIKVSKGSDVEVLLNRTPFYAESGGQIGDYGFLYVTQGTNQQTAVVEVK 582 (759)
Q Consensus 506 ~~~~T~f~gY~~---~~~~akVl~i~~~~~~v~~~~~g~~~~VvLD~T~FYpEgGGQ~~D~G~I~~~~~~~~~~~~~~V~ 582 (759)
.+++|+|+||++ .+++|+|+++.. .+|+||+|+|||||||||+|+|+|..++. .++|.
T Consensus 497 ~~~~T~~l~y~~~~~~e~~a~Vl~i~~-------------~~vvLd~T~FYpEgGGQ~~D~G~I~~~~~------~~~V~ 557 (902)
T TIGR03683 497 DLPETRRLFYEDPTMREFEAKVLGVFD-------------NYVVLDQTAFYPEGGGQPADTGYLITNGG------KIRVV 557 (902)
T ss_pred cCCCceEeccccCccceEEEEEEEEEc-------------CEEEEeCCCCCCCCCCCCCCEEEEEeCCc------EEEEE
Confidence 468899999999 688999999973 26999999999999999999999987776 79999
Q ss_pred EEEEeCCCEEEEEEEeeccccCCCCEEEEEEccccchHHHHhccHHHHHHHHHHhHhCCcceeeeeeccCCcEEEEEecC
Q 004366 583 DVKKSLGSVFVHKGTIREGVLEVGREVEAIVDPKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFH 662 (759)
Q Consensus 583 dV~k~~~g~ivH~~~~~~g~l~~G~~V~~~VD~~rR~~~mr~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~~R~DF~~~ 662 (759)
+|++. +|.++|.+. .+.+++|++|.++|||+||+.+|+||||||||++||+++||.|++|+||+++++++||||+|+
T Consensus 558 dv~k~-~g~i~H~~~--~~~l~~G~~V~~~VD~~rR~~~m~~HTAtHLL~~alr~vlG~~v~q~Gs~v~~d~~r~Df~~~ 634 (902)
T TIGR03683 558 DVQKV-GGVIVHKVD--GEGIKEGDEVKGEIDWERRLRLMRHHTATHVLLAAARRVLGRHVWQAGAQKDTDKARLDITHY 634 (902)
T ss_pred EEEEE-CCEEEEEeC--CCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCceeecCccccCCcEEEEEeCC
Confidence 99997 899999996 244899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCEEEEEcCHHHHHHhchhhhc--CCCCCCcEEEEEECCccccccccCCccc----cc
Q 004366 663 RPLLDTELEEIERLINGWIGDANLLQTKVMALDDAKRAGAIAMF--GEKYGEQVKISSKMYVLWRFLVCLWNFV----VE 736 (759)
Q Consensus 663 ~~lt~eel~~IE~~vNeiI~~~~pV~~~~~~~eEA~~~~~~~lf--~eky~~~VRVV~Ig~~~~d~~~CgGTHV----eI 736 (759)
+++|++++.+||+.||++|++|+||++.+++++||++.+++++| +++|++.||||+|++ +|.++|||||| +|
T Consensus 635 ~~lt~eel~~IE~~vN~~I~~n~pV~~~~~~~~eA~~~~~~~l~~~~~~~~~~VRVV~Ig~--~d~e~CgGTHV~nTgeI 712 (902)
T TIGR03683 635 KRISEEEIKEIERLANRIVMENRPVSVKWMDRNEAEQKYGFRLYQGGVPPGREIRVVEIED--WDVQACGGTHCRNTGEI 712 (902)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCeEEEEeCHHHHHhcCchhhhccCCCCCCeEEEEEECC--eeeeCCCCCCccchhcC
Confidence 99999999999999999999999999999999999999888888 678899999999998 89999999999 89
Q ss_pred CcEEEEeeecCCCCceeee
Q 004366 737 PMLTILLKSEPSKSFLSRV 755 (759)
Q Consensus 737 G~IkIl~~~~~gk~~~~~~ 755 (759)
|.|+|++.+..++|.+ |+
T Consensus 713 G~~kI~~~~~i~~Gv~-RI 730 (902)
T TIGR03683 713 GPIKILKTERIQDGVE-RI 730 (902)
T ss_pred ceEEEEEEEEecCCeE-EE
Confidence 9999999998888874 54
No 7
>PRK13902 alaS alanyl-tRNA synthetase; Provisional
Probab=100.00 E-value=5e-192 Score=1696.98 Aligned_cols=645 Identities=30% Similarity=0.492 Sum_probs=591.6
Q ss_pred CCcccccceeeeccCCCccccCcCCCc----CCCchhhcccCCCCCCChHHHHHHHHHHHhhCCCeeecCccCcCC-CCc
Q 004366 6 PSILPCGHFLFKGATGVPSARSTSASV----QPLTEEVEDKSQDFPSSGDSIRKRFLDFYASRGHKVLPSASLVPE-DPT 80 (759)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~eiR~~Fl~fF~~~gH~~v~s~slvp~-d~t 80 (759)
+.|-.||.+|||.+.-|+.|.+.+-+. +.|+.. ++||++|||++||+||++|||+++|||||||+ +++
T Consensus 20 ~~c~~cg~~fwt~~~~r~~cgd~pc~~y~fi~~~~~~-------~~~~~~eiR~~Fl~FF~~~gH~~v~s~pvvprw~dD 92 (900)
T PRK13902 20 KQCKKCGSYFWTLDPDRETCGDAPCDEYSFIGNPIFS-------KKYTLKEMREKFLSFFEKHGHTRIERYPVVARWRDD 92 (900)
T ss_pred eECCccCCceecCCCCcCCCCCCCCccceecCCCCcC-------CCCCHHHHHHHHHHHHHhCCCEEcCCcCcCCCCCCC
Confidence 579999999999999999999976664 333333 36999999999999999999999999999994 667
Q ss_pred cceecccccccccccc-ccCCCCCCCcccccCcccCCCccccCCCCCcccccccccCCccC-----cccHHHHHHHHHHh
Q 004366 81 VLLTIAGMLQFKPIFL-GKVPRQVPRAATSQRCIRTNDVENVGRTSRHHTFFEMLGNFSFG-----DYFKKEAIQWAWEF 154 (759)
Q Consensus 81 llf~nAGm~~fk~~f~-g~~~p~~~r~~~~QkCiR~nDldnVG~t~rH~TfFEMlGn~Sfg-----dYfK~eai~~awef 154 (759)
||||||||+||||||+ |.++||++|+|+||||||+|||||||+|+||||||||||||||| ||||+|||+|||||
T Consensus 93 llft~Agm~~Fkp~f~~G~~~pp~~~~~~sQ~CiR~nDldnVG~t~rH~T~FEMlGn~sFg~~~~~~YfK~eaI~~a~e~ 172 (900)
T PRK13902 93 VYLTIASIYDFQPWVTSGLVPPPANPLVISQPCIRLNDIDNVGRTGRHLTSFEMMAHHAFNYPDKEVYWKDETVEYCFEF 172 (900)
T ss_pred eeeeecchhhhhHHhcCCCCCCCCCCceecccccchhhhhhccccCCchhhhhhccceeeCCCCcccccHHHHHHHHHHH
Confidence 9999999999999998 99999999999999999999999999999999999999999999 99999999999999
Q ss_pred hhcccCCCCCceEEEEeCChHHHHHHHHHhcCCCCCceeccCCCCCccCCCCCCCCCCceEEEEecCCCCCCCCCCCCCC
Q 004366 155 STVEFGLPANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGATGPCGPCSEIYYDFHPDRGCSDVDLGDD 234 (759)
Q Consensus 155 Lt~~l~l~~~rl~vTv~~~D~e~~~iW~~~~g~~~~~I~~~~~~dNfW~~G~~GpcGPcsEI~~d~g~~~~~~~~~~~~~ 234 (759)
||++|||||+||. + +||||+|| ||||||||||| +|
T Consensus 173 lt~~lgi~~~~I~--------------------------~---~enfW~~G--GpcGPcsEi~~-~g------------- 207 (900)
T PRK13902 173 FTKELGIDPEEIT--------------------------F---KESWWEGG--GNAGPCFEVLV-RG------------- 207 (900)
T ss_pred HHhhcCCCHHHee--------------------------e---cccccCCC--CCCCCceeeee-CC-------------
Confidence 9999999997752 2 69999999 99999999999 32
Q ss_pred CceEEEeeeecccccccCCCccccCccCcccccchHHHHHHHHhCCCCcccccccHHHHHHHHHHhCCCccC--------
Q 004366 235 TRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERIARILQKVPNNYETDLIFPIIKKASELANVSYAQ-------- 306 (759)
Q Consensus 235 ~r~lEiwNlVFmq~~~~~~g~~~~Lp~k~IDTGmGlERl~~vlqg~~s~ydtd~F~~li~~i~~~~~~~y~~-------- 306 (759)
|||||||||||+++ +|+|+|||+||||||||||||+||+||+|||||| +|.|||+.|++++|++|+.
T Consensus 208 ---lEiwnlVFmqy~~~-~g~~~~Lp~k~VDTG~GLER~~~v~qg~~t~ydt-~f~~ii~~i~~~~g~~~~~~~~~~~~~ 282 (900)
T PRK13902 208 ---LELATLVFMQYKKD-GNRYVEMPLKIVDTGYGLERIAWASQGTPTAYDA-IFGELVDKLKENAGVEEPDEEILAEAA 282 (900)
T ss_pred ---EEeeeeeeeEEEcC-CCeeeeCCCCeeeCCcCHHHHHHHHcCCCchHHH-HHHHHHHHHHHHhCCCcccchhhhhhh
Confidence 99999999999998 8999999999999999999999999999999999 9999999999999999853
Q ss_pred ------Cc-c-c------cc-------------------cceEEeehhhhhHHhhhhCCCccCCCCCchHHHHHHHHHHH
Q 004366 307 ------SN-D-R------TN-------------------LNLKIIGDHLRAIVYLLSDGVFPSNIGRGYVVRRLIRRAVR 353 (759)
Q Consensus 307 ------~~-~-~------~~-------------------~~~rviaDH~R~~~~~i~DG~~Psn~grGYvlRrilRRa~r 353 (759)
+. + . .+ .++|+||||+||++|||+||++|||+|||||||||||||+|
T Consensus 283 ~~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~vIaDH~R~~~f~i~DGv~PsN~grGYvlRrilRRa~r 362 (900)
T PRK13902 283 RLAGLMDIEEIEDLRSLRQKVAKKLGIDVEELEELLEPLEAIYAIADHTRTLAFMLGDGIVPSNVGEGYLARLVIRRTLR 362 (900)
T ss_pred hhcccCCcccchhHHHHHHHHHhhcccchhhhhhhccccceEEEEecHHHHHHHHHhCCCcCCCCCcchHHHHHHHHHHH
Confidence 10 0 0 12 69999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCCCCCccccchHHHHHHHHHHhccCChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 004366 354 TGRLLGIKGDGRGNLEGAFLPSIAEKAIELSTHIDSDVKAREQRILEELKREELRFVQTLERGEKLLDQMLADALSRTRE 433 (759)
Q Consensus 354 ~~~~lg~~~~~~~~~~~~~l~~lv~~v~~~m~~~yPeL~~~~~~I~~ii~~EE~~F~~tL~~G~~~l~~~i~~~~~~~~~ 433 (759)
++++||++.| |++||+.+++.|++.||||.++++.|++||+.||++|.+||++|.++|+++++ ++
T Consensus 363 ~~~~lg~~~~---------l~~lv~~~~~~~~~~ypel~~~~~~I~~ii~~Ee~~f~~tl~~G~~~~~~~~~----~~-- 427 (900)
T PRK13902 363 LLDELGLDVP---------LSELVDMQIDELKEDYPELKENRDYILDIVDLEEEKYRETLERGKRIVERLAK----KK-- 427 (900)
T ss_pred HHHHhCCCcc---------HHHHHHHHHHHHhhhChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hc--
Confidence 9999999988 99999999999999999999999999999999999999999999999999998 32
Q ss_pred CCCCCCCChHHHHHHhhcCCCChhhHHHHHHHcCCeeCh-hhHHHHHHHHHHHHHHhhcccccccCChhHHhhhCCCCcc
Q 004366 434 SGSVPRLSGQDAFLLYDTFGFPVEITKEVAEEHGVSVDM-KGFDIEMENQRRQSQAAHNAVKLSVDDSADLAEKIPDTEF 512 (759)
Q Consensus 434 ~g~~~~l~g~~af~LydTyGfP~dlt~~ia~e~g~~vd~-~~F~~~~~~~r~~sr~~~~~~~~~~~~~~~l~~~~~~T~f 512 (759)
+.|||++||+||||||||+|||++||+++|++||+ ++|+++|++||++|+++... ... .......+++|++
T Consensus 428 ----~~l~g~~~f~LYDt~G~P~dl~~eia~e~g~~vd~p~~F~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~T~~ 499 (900)
T PRK13902 428 ----EEIPLDDLIELYDSHGIPPEIVKEIAKKKGVEVEVPDNFYSLVAERHEKAEEEEEE--PVV--EEERLKDLPETEK 499 (900)
T ss_pred ----CCCCHHHHhhhhhcCCCCHHHHHHHHHHcCCccCchhhHHHHHHHHHHHHhhcccc--ccc--hhhHhhcCCCceE
Confidence 25999999999999999999999999999999999 89999999999999874211 011 0111234688999
Q ss_pred ccccc---cccceEEEEEEeCCeeeeeecCCCeEEEEecCcceecCCCCCCCCeEEEEeCCCcccccceEEEEEEEEeCC
Q 004366 513 LGYDT---LSAKAIVESLLVNGKPVIKVSKGSDVEVLLNRTPFYAESGGQIGDYGFLYVTQGTNQQTAVVEVKDVKKSLG 589 (759)
Q Consensus 513 ~gY~~---~~~~akVl~i~~~~~~v~~~~~g~~~~VvLD~T~FYpEgGGQ~~D~G~I~~~~~~~~~~~~~~V~dV~k~~~ 589 (759)
+||++ .+++|+|+++.. .+|+||+|+|||||||||+|+|+|..++. .++|.+|++. +
T Consensus 500 l~y~~~~~~~~~a~Vl~i~~-------------~~vvLD~T~FYpEgGGQ~~D~G~I~~~~~------~~~V~dv~k~-~ 559 (900)
T PRK13902 500 LFYEDPYMREFEAKVLGVID-------------NYVVLDQTAFYPEGGGQPADTGVLIVDGK------GYKVVDVQKV-G 559 (900)
T ss_pred eccccCccceEEEEEEEEEc-------------CEEEEeCCCCCCCCCCCCCCEEEEEeCCc------EEEEEEEEEE-C
Confidence 99999 688999999973 27999999999999999999999997766 7999999997 8
Q ss_pred CEEEEEEEeeccccCCCCEEEEEEccccchHHHHhccHHHHHHHHHHhHhCCcceeeeeeccCCcEEEEEecCCCCCHHH
Q 004366 590 SVFVHKGTIREGVLEVGREVEAIVDPKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLDTE 669 (759)
Q Consensus 590 g~ivH~~~~~~g~l~~G~~V~~~VD~~rR~~~mr~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~~R~DF~~~~~lt~ee 669 (759)
|.++|.+.. +.+.+|++|.++|||+||+++||||||||||++||+++||.|++|+|++++++++||||+|++++|+++
T Consensus 560 g~i~H~~~~--~~~~~G~~V~~~VD~~rR~~~mr~HTAtHLL~~al~~vlG~~v~q~Gs~v~~d~~r~Df~~~~~lt~ee 637 (900)
T PRK13902 560 GVIVHVLEG--EPPKKGDEVRGEIDWERRYRLMRHHTATHIILAAARKVLGDHVWQAGAQKTVDKARLDITHYKRITREE 637 (900)
T ss_pred CEEEEEeCC--CCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCceeecCccccCCCEEEEEeCCCCCCHHH
Confidence 999999853 445669999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEcCHHHHHHhchhhhc--CCCCCCcEEEEEECCccccccccCCccc----ccCcEEEEe
Q 004366 670 LEEIERLINGWIGDANLLQTKVMALDDAKRAGAIAMF--GEKYGEQVKISSKMYVLWRFLVCLWNFV----VEPMLTILL 743 (759)
Q Consensus 670 l~~IE~~vNeiI~~~~pV~~~~~~~eEA~~~~~~~lf--~eky~~~VRVV~Ig~~~~d~~~CgGTHV----eIG~IkIl~ 743 (759)
+.+||+.||++|++|+||++.+++++||++.+++++| +++|++.||||+|++ +|.++|||||| +||.|+|++
T Consensus 638 l~~IE~~vN~~I~~n~pV~~~~~~~~eA~~~~~~~l~~~g~~~~~~VRVV~Ig~--~d~e~CgGTHV~nTgeIG~~kI~~ 715 (900)
T PRK13902 638 VKEIERLANEIVMENRPVKVEWMDRNEAEQKYGFRLYQGGVPPGKTIRVVEIGD--WDVEACGGTHVSNTGEIGPIKILK 715 (900)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCHHHHHhccchhhhccCCCCCCeEEEEEECC--eeeeCCCCCCcCcHhhCeeEEEEE
Confidence 9999999999999999999999999999999888888 788999999999998 89999999999 899999999
Q ss_pred eecCCCCceeee
Q 004366 744 KSEPSKSFLSRV 755 (759)
Q Consensus 744 ~~~~gk~~~~~~ 755 (759)
.+..++|-+ |+
T Consensus 716 ~e~i~~Gv~-RI 726 (900)
T PRK13902 716 TERIQDGVE-RL 726 (900)
T ss_pred EEEecCCeE-EE
Confidence 998888864 54
No 8
>PRK01584 alanyl-tRNA synthetase; Provisional
Probab=100.00 E-value=3.7e-192 Score=1622.45 Aligned_cols=570 Identities=38% Similarity=0.695 Sum_probs=537.0
Q ss_pred CChHHHHHHHHHHHhhCCCeeecCccCcC-CCCccceeccccccccccccccCCCCCCCcccccCcccCCCccccCCCCC
Q 004366 48 SSGDSIRKRFLDFYASRGHKVLPSASLVP-EDPTVLLTIAGMLQFKPIFLGKVPRQVPRAATSQRCIRTNDVENVGRTSR 126 (759)
Q Consensus 48 ~~~~eiR~~Fl~fF~~~gH~~v~s~slvp-~d~tllf~nAGm~~fk~~f~g~~~p~~~r~~~~QkCiR~nDldnVG~t~r 126 (759)
||++|||++||+||++|||+++||||||| +|||||||||||+||||||+|.++||++|+||||||||+||||||| |+|
T Consensus 1 ~~~~eiR~~fl~FF~~kgH~~~~s~slvp~~d~tllftnAGm~~fk~~f~G~~~p~~~r~~~~QkCiR~~Dle~VG-~~r 79 (594)
T PRK01584 1 MTLDELRKKYIDFFKSKGHVEIAGKSLIPENDPTVLFTTAGMHPLVPYLLGEPHPSGTRLVDVQKCLRTGDIDEVG-DLS 79 (594)
T ss_pred CCHHHHHHHHHHHHHhCCCEEcCCCCcCCCCCCCeeeeccchhhhhHHhcCCCCCCCCCccccccccccccccccC-CCc
Confidence 78999999999999999999999999999 7999999999999999999999999999999999999999999999 899
Q ss_pred cccccccccCCccCcccHHHHHHHHHHhhhcc--cCCCCCceEEEEeCC------hHHHHHHHHHhcCCCCCceeccCCC
Q 004366 127 HHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVE--FGLPANRLWISVYED------DDEAFEIWNKEVGVPVEHIKRMGAD 198 (759)
Q Consensus 127 H~TfFEMlGn~SfgdYfK~eai~~awefLt~~--l~l~~~rl~vTv~~~------D~e~~~iW~~~~g~~~~~I~~~~~~ 198 (759)
||||||||||||||||||+|||+|||||||++ |||||+|||||||++ |+||++||++ +|||++||++++.+
T Consensus 80 HhTfFEMlGnfSfgdYfK~eai~~awe~lt~~~~l~l~~~rl~vTv~~~~~~~~~D~Ea~~iW~~-~g~~~~rI~~~~~~ 158 (594)
T PRK01584 80 HLTFFEMLGNWSLGAYFKEESIKYSFEFLTSPDYLNIPKDKLYVTVFEGDEEIPRDEETASVWES-LGIPKDRIFYLSRE 158 (594)
T ss_pred chhHHHhhccccHhhhhHHHHHHHHHHHhccchhcCCCHHHeEEEEeCCCCCCCCCHHHHHHHHH-cCCCHHHeeeCCCC
Confidence 99999999999999999999999999999998 999999999999998 9999999998 99999999999999
Q ss_pred CCcc-CCCCCCCCCCceEEEEecCCCCCCCCC--CCCCCCceEEEeeeecccccccCCCccccCccCcccccchHHHHHH
Q 004366 199 DNFW-NSGATGPCGPCSEIYYDFHPDRGCSDV--DLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERIAR 275 (759)
Q Consensus 199 dNfW-~~G~~GpcGPcsEI~~d~g~~~~~~~~--~~~~~~r~lEiwNlVFmq~~~~~~g~~~~Lp~k~IDTGmGlERl~~ 275 (759)
|||| +||++||||||||||||+|++ ++... +.++|+|||||||+|||||||++||+|.|||+||||||||||||+|
T Consensus 159 dNfW~~~G~~GPCGPcsEI~~d~g~~-~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~~~~Lp~k~IDTGmGLERl~~ 237 (594)
T PRK01584 159 HNWWGPVGETGPCGPDTEIFVDTGKP-KCSVNCRPTCSCGKYFEIWNNVFMQYNKDEDGNYEELKRKCVDTGMGIERTIA 237 (594)
T ss_pred CCcccccCCCcCCCCceEEEEecCCc-ccccccCCCCCCCceEEEeeeeeeeeeecCCCccccCCCCceeCCcCHHHHHH
Confidence 9999 899999999999999999987 43322 2247899999999999999999999999999999999999999999
Q ss_pred HHhCCCCcccccccHHHHHHHHHHhCCCccCCccccccceEEeehhhhhHHhhhhC--CCccCCCCCchHHHHHHHHHHH
Q 004366 276 ILQKVPNNYETDLIFPIIKKASELANVSYAQSNDRTNLNLKIIGDHLRAIVYLLSD--GVFPSNIGRGYVVRRLIRRAVR 353 (759)
Q Consensus 276 vlqg~~s~ydtd~F~~li~~i~~~~~~~y~~~~~~~~~~~rviaDH~R~~~~~i~D--G~~Psn~grGYvlRrilRRa~r 353 (759)
||||++||||||+|.|||++|++++|++|+.++ ..++|+||||||+||++||||| |++|||+|||||||||||||+|
T Consensus 238 vlqg~~s~ydtdlf~pii~~i~~~~~~~y~~~~-~~~~a~rvIaDH~R~~~f~i~D~~Gv~PsN~grGYvlRrilRRa~r 316 (594)
T PRK01584 238 FLQGKSSVYDTEAFTPIIKRIEKISGKIYGQNE-EDDRSIRIIADHIRAACFILGDPFVVLPSNVGQGYVLRRLIRRSIR 316 (594)
T ss_pred HHcCCCCccchhhhHHHHHHHHHHhCCCcCCCC-CCceeEEEEecHHHHHHHHhhcccCCCCCCCCCchHHHHHHHHHHH
Confidence 999999999999999999999999999997543 5678999999999999999999 9999999999999999999999
Q ss_pred HHHHhCCCCCCCCCccccchHHHHHHHHHHhccCChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 004366 354 TGRLLGIKGDGRGNLEGAFLPSIAEKAIELSTHIDSDVKAREQRILEELKREELRFVQTLERGEKLLDQMLADALSRTRE 433 (759)
Q Consensus 354 ~~~~lg~~~~~~~~~~~~~l~~lv~~v~~~m~~~yPeL~~~~~~I~~ii~~EE~~F~~tL~~G~~~l~~~i~~~~~~~~~ 433 (759)
+|++||++.| ||++||+.|++.|+++||||.++++.|++||+.||++|.+||++|+++|+++++ ++++
T Consensus 317 ~~~~lg~~~~--------fl~~lv~~v~~~~~~~ypel~~~~~~I~~ii~~EE~~F~~tl~~G~~~l~~~i~----~~~~ 384 (594)
T PRK01584 317 HAKKLGIESH--------FLADLVDSVEEIYGSFYPELTEKKDFIKEELNKEEEKFFKTLRKGEQEFIKLIP----NLGS 384 (594)
T ss_pred HHHHhCCCch--------hHHHHHHHHHHHHhhhChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----Hhcc
Confidence 9999999999 999999999999999999999999999999999999999999999999999998 5542
Q ss_pred CCCCCCCChHHHHHHhhcCCCChhhHHHHHHHcCCeeChhhHHHHHHHHHHHHHHhhcccccccCChhHHhhhCCCCccc
Q 004366 434 SGSVPRLSGQDAFLLYDTFGFPVEITKEVAEEHGVSVDMKGFDIEMENQRRQSQAAHNAVKLSVDDSADLAEKIPDTEFL 513 (759)
Q Consensus 434 ~g~~~~l~g~~af~LydTyGfP~dlt~~ia~e~g~~vd~~~F~~~~~~~r~~sr~~~~~~~~~~~~~~~l~~~~~~T~f~ 513 (759)
+ +.|||++||+||||||||+|||++||+|+|++||+++|+++|++||++||++. . .+|.
T Consensus 385 -~--~~~~g~~af~LydTyGfP~dlt~~~a~e~g~~vd~~~f~~~~~~~~~~~~~~~--------------~----~~f~ 443 (594)
T PRK01584 385 -S--KIIPGDIAFKLYDTYGFPYEITEELASEYGFTVDREGFDEHFKKHQKVSKKGA--------------D----KVFK 443 (594)
T ss_pred -C--CccCHHHHHhhhccCCCCHHHHHHHHHHcCCeecHHHHHHHHHHHHHHHhhcc--------------c----cccc
Confidence 3 47999999999999999999999999999999999999999999998887520 0 0110
Q ss_pred cccccccceEEEEEEeCCeeeeeecCCCeEEEEecCcceecCCCCCCCCeEEEEeCCCcccccceEEEEEEEEeCCCEEE
Q 004366 514 GYDTLSAKAIVESLLVNGKPVIKVSKGSDVEVLLNRTPFYAESGGQIGDYGFLYVTQGTNQQTAVVEVKDVKKSLGSVFV 593 (759)
Q Consensus 514 gY~~~~~~akVl~i~~~~~~v~~~~~g~~~~VvLD~T~FYpEgGGQ~~D~G~I~~~~~~~~~~~~~~V~dV~k~~~g~iv 593 (759)
||++|+|.
T Consensus 444 --------------------------------------------g~~~d~g~---------------------------- 451 (594)
T PRK01584 444 --------------------------------------------GGLADHSY---------------------------- 451 (594)
T ss_pred --------------------------------------------CCcCcccc----------------------------
Confidence 35666642
Q ss_pred EEEEeeccccCCCCEEEEEEccccchHHHHhccHHHHHHHHHHhHhCCcceeeeeeccCCcEEEEEecCCCCCHHHHHHH
Q 004366 594 HKGTIREGVLEVGREVEAIVDPKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLDTELEEI 673 (759)
Q Consensus 594 H~~~~~~g~l~~G~~V~~~VD~~rR~~~mr~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~~R~DF~~~~~lt~eel~~I 673 (759)
.+|++|||+|||++||+++||.++.|+||++.++++||||++++++|++++++|
T Consensus 452 --------------------------~~~r~HTAtHLL~~ALr~vlG~~v~q~Gs~v~~d~~r~DF~~~~~it~edL~~I 505 (594)
T PRK01584 452 --------------------------ETTKLHTATHLLHKALRLVLGDHVRQKGSNITAERLRFDFSHPEKMTDDEIKKV 505 (594)
T ss_pred --------------------------cHHHHHHHHHHHHHHHHHHcCccceeecCCcCCCcEEEEEeCCCCCCHHHHHHH
Confidence 389999999999999999999999999999999999999999989999999999
Q ss_pred HHHHHHHHhcCCCEEEEEcCHHHHHHhchhhhcCCCCCCcEEEEEECCccccccccCCccc----ccCcEEEEeeecCCC
Q 004366 674 ERLINGWIGDANLLQTKVMALDDAKRAGAIAMFGEKYGEQVKISSKMYVLWRFLVCLWNFV----VEPMLTILLKSEPSK 749 (759)
Q Consensus 674 E~~vNeiI~~~~pV~~~~~~~eEA~~~~~~~lf~eky~~~VRVV~Ig~~~~d~~~CgGTHV----eIG~IkIl~~~~~gk 749 (759)
|+.||++|++++||++.+++++||++.+++++|+++|++.||||+||+ +|.++|||||| +||.|+|++.+.+|+
T Consensus 506 E~~vNeiI~~n~pV~~~~~s~eEA~~~~~~~lf~e~y~~~VRVV~Igd--~d~elCGGTHV~nTgeIG~fkI~s~~s~g~ 583 (594)
T PRK01584 506 EDIVNLQIKNDLSVKKEVMSLEEAREKGAMALFGEKYEDIVKVYEIDG--FSKEVCGGPHVENTGELGTFKIQKEQSSSS 583 (594)
T ss_pred HHHHHHHHHhCCCeEEEEcCHHHHHhcchhhhccccCCCcEEEEEECC--eeeeCCCCCCCCCcccCceEEEEecccccC
Confidence 999999999999999999999999999989999999999999999998 89999999999 899999999999999
Q ss_pred Cceeee
Q 004366 750 SFLSRV 755 (759)
Q Consensus 750 ~~~~~~ 755 (759)
|.+ |+
T Consensus 584 Gvr-RI 588 (594)
T PRK01584 584 GVR-RI 588 (594)
T ss_pred CeE-EE
Confidence 986 54
No 9
>PF01411 tRNA-synt_2c: tRNA synthetases class II (A); InterPro: IPR018164 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Alanyl-tRNA synthetase (6.1.1.7 from EC) is an alpha4 tetramer that belongs to class IIc. ; GO: 0000166 nucleotide binding, 0004813 alanine-tRNA ligase activity, 0005524 ATP binding, 0006419 alanyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3HY1_A 3HXZ_C 3HXY_A 3HXU_A 3HY0_B 3HXV_A 3HXX_A 3HXW_A 2E1B_A 2ZZG_B ....
Probab=100.00 E-value=1.3e-175 Score=1496.47 Aligned_cols=543 Identities=52% Similarity=0.899 Sum_probs=454.1
Q ss_pred HHHHHHHHHHhhCCCeeecCccCcC-CCCccceeccccccccccccccC-CCCCCCcccccCcccCC----CccccCCCC
Q 004366 52 SIRKRFLDFYASRGHKVLPSASLVP-EDPTVLLTIAGMLQFKPIFLGKV-PRQVPRAATSQRCIRTN----DVENVGRTS 125 (759)
Q Consensus 52 eiR~~Fl~fF~~~gH~~v~s~slvp-~d~tllf~nAGm~~fk~~f~g~~-~p~~~r~~~~QkCiR~n----DldnVG~t~ 125 (759)
|||++||+||++|||+++||||||| +|||||||||||+||||||+|.. +||++|+|+||||||++ ||||||+|+
T Consensus 1 eiR~~fl~fF~~~gH~~v~s~~lvp~~d~~llf~~Agm~~fkp~f~g~~~~p~~~r~~~~Q~CiR~~GkhnDld~VG~t~ 80 (552)
T PF01411_consen 1 EIREKFLDFFEKKGHTIVPSSSLVPRWDPTLLFTNAGMNQFKPYFLGGEVPPPANRLVSSQKCIRTGGKHNDLDNVGRTG 80 (552)
T ss_dssp HHHHHHHHHHHTTT-EEE----SS-TT-TTBSS--SGGGGGCCCCTTSSS--SSSCEEEEEEEE-EETTEECGGGTTTSS
T ss_pred CHHHHHHHHHHHCCCEEeccCCcccCCCCCceeeHhhHHHHHHHhcCCCCCCCCCcccccceeeccCCCcchhhhcCCCc
Confidence 7999999999999999999999999 79999999999999999999998 99999999999999997 999999999
Q ss_pred CcccccccccCCccCcccHHHHHHHHHHhhhcccCCCCCceEEEEeCChHHHHHHHHHhcCCCCCceeccCCCCCccCCC
Q 004366 126 RHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSG 205 (759)
Q Consensus 126 rH~TfFEMlGn~SfgdYfK~eai~~awefLt~~l~l~~~rl~vTv~~~D~e~~~iW~~~~g~~~~~I~~~~~~dNfW~~G 205 (759)
|||||||||||||||||||+|||+|||||||++|||||+|||||||.+|+||++||++..|+|++||++|+.++|||+||
T Consensus 81 rH~T~FEMlGn~sfgdYfK~eai~~awe~lt~~l~i~~~~l~vt~~~~d~ea~~~w~~~~g~~~~~i~~~~~~~nfw~~g 160 (552)
T PF01411_consen 81 RHHTFFEMLGNFSFGDYFKEEAIEYAWEFLTEVLGIPPDRLYVTVFEWDGEAGEIWEKIVGGPEERILVFGKKDNFWEMG 160 (552)
T ss_dssp S--SEEEEEEEEEECSS-HHHHHHHHHHHHHCTTT--GGGEEEEEECCECCCCCCCCECCTTECCCEEEE-CCEEEEESS
T ss_pred eEeeehhhccccccccccHHHHHHHHHHHHHhhcCCChHhEEEEEeCCchhHHHHHHHhcCCCHHHeEecCCCCceEECC
Confidence 99999999999999999999999999999999999999999999999999999999998899999999999999999999
Q ss_pred CCCCCCCceEEEEecCCCCCCC---CCCCCCCCceEEEeeeecccccccCCCccccCccCcccccchHHHHHHHHhCCCC
Q 004366 206 ATGPCGPCSEIYYDFHPDRGCS---DVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERIARILQKVPN 282 (759)
Q Consensus 206 ~~GpcGPcsEI~~d~g~~~~~~---~~~~~~~~r~lEiwNlVFmq~~~~~~g~~~~Lp~k~IDTGmGlERl~~vlqg~~s 282 (759)
++||||||||||||+|+++++. +.+.++++||+||||+|||||++++||++.|||+++|||||||||++++|||++|
T Consensus 161 ~~gpcgpcseI~~d~G~e~~~~~~~~~~~~~~~~~~eiwn~vf~q~~~~~~g~~~~L~~~~idtGmgler~~~~lq~~~s 240 (552)
T PF01411_consen 161 DTGPCGPCSEIFYDRGEERGCWDSQGTPTCDDDRFLEIWNLVFMQYNRDEDGSLEPLPKKNIDTGMGLERLAAVLQGVRS 240 (552)
T ss_dssp TSEEEEEEEEEEEEEECCCHHHHHHSTSSHHHHHECCCCCCCCCEEEETTTSHCCCCCCCCCCCCEEHHHHCHHHCCHCC
T ss_pred CCCCCCCCEEEEECCCcccCccccccccccccccHHHHHHHHHHHhccccccccccccchhhhcCCCcHHHHHHHhhhhh
Confidence 9999999999999999998752 2344688999999999999999999999999999999999999999999999999
Q ss_pred cccccccHHHHHHHHHHhCCCccCCccccccceEEeehhhhhHHhhhhCCCccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 004366 283 NYETDLIFPIIKKASELANVSYAQSNDRTNLNLKIIGDHLRAIVYLLSDGVFPSNIGRGYVVRRLIRRAVRTGRLLGIKG 362 (759)
Q Consensus 283 ~ydtd~F~~li~~i~~~~~~~y~~~~~~~~~~~rviaDH~R~~~~~i~DG~~Psn~grGYvlRrilRRa~r~~~~lg~~~ 362 (759)
||+||+|.|+++.++++++++|.... ..++++||||||+||++|||+||++|||+|||||||||||||+|++++||++.
T Consensus 241 ~~~tdlf~~i~~~i~~~~~~~y~~~~-~~~~a~rvIaDH~Ra~~f~i~DGv~PsN~GrGYvlRriiRRa~r~~~~lg~~~ 319 (552)
T PF01411_consen 241 NYDTDLFMPIIEAIEELSGVPYKDEE-EIDVALRVIADHIRALTFAIADGVLPSNEGRGYVLRRIIRRAVRFGRKLGIEE 319 (552)
T ss_dssp HHHCHHTCHHHHHHHHHHC--TTSSC-CCHHHHHHHHHHHHHHHHHHHTT--SSSSHHHHHHHHHHHHHHHHHHHTT-SS
T ss_pred hhchhhhhhHHHHHHHHcCCCccccc-ccccEEEEEcchhhceeeEecCCeeecccCCcchHHHHHHHHHHHHHHhCCCc
Confidence 99999999999999999999996544 77899999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccccchHHHHHHHHHHhccCChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCh
Q 004366 363 DGRGNLEGAFLPSIAEKAIELSTHIDSDVKAREQRILEELKREELRFVQTLERGEKLLDQMLADALSRTRESGSVPRLSG 442 (759)
Q Consensus 363 ~~~~~~~~~~l~~lv~~v~~~m~~~yPeL~~~~~~I~~ii~~EE~~F~~tL~~G~~~l~~~i~~~~~~~~~~g~~~~l~g 442 (759)
+ ||++||+.|++.|++.||||.++++.|++||+.||++|.+||++|+++|+++++ ++++ + +.|||
T Consensus 320 ~--------fl~~lv~~vi~~~~~~ypel~~~~~~I~~ii~~EE~~F~~TL~~G~~~l~~~i~----~~~~-~--~~lsg 384 (552)
T PF01411_consen 320 P--------FLYELVPVVIESMGDFYPELKENKDYIKDIIKEEEERFLKTLERGLKLLEKLIK----KLKK-K--KELSG 384 (552)
T ss_dssp ----------HHHHHHHHHHHHTTTGTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHC-C--SEE-H
T ss_pred c--------chHHHHHHHHHHhhccChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhcc-c--cCCCh
Confidence 9 999999999999999999999999999999999999999999999999999999 6654 3 58999
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHcCCeeChhhHHHHHHHHHHHHHHhhcccccccCChhHHhhhCCCCccccccccccce
Q 004366 443 QDAFLLYDTFGFPVEITKEVAEEHGVSVDMKGFDIEMENQRRQSQAAHNAVKLSVDDSADLAEKIPDTEFLGYDTLSAKA 522 (759)
Q Consensus 443 ~~af~LydTyGfP~dlt~~ia~e~g~~vd~~~F~~~~~~~r~~sr~~~~~~~~~~~~~~~l~~~~~~T~f~gY~~~~~~a 522 (759)
++||+||||||||+|||++||+++|++||+++|+++|++||++||++++.......+...+.+...+|+|+||+.++++|
T Consensus 385 e~aF~LYDTyGfP~Dlt~eia~e~gl~vD~~~f~~~m~~qr~~sr~~~~~~~~~~~~~~~~~~l~~~teF~gYe~~~~~a 464 (552)
T PF01411_consen 385 EDAFKLYDTYGFPLDLTEEIAEEKGLSVDEEGFEYAMEEQRERSRAAKKKKSSIEEDVSALAELPKTTEFVGYEYLECEA 464 (552)
T ss_dssp HHHHHHHHHH---HHHHHHHHHTTT-EE-HHCCHHHHHHHCHHHCCHH--------SSSTTTTCHHHEETCCCC------
T ss_pred HHheeehhccCCCHHHHHHHHHHhceeecHHHHHHHHHHHHHHhhhccccccchhhhHHHHhhhhcccccceeecccccc
Confidence 99999999999999999999999999999999999999999999987664321110111222212247899999999999
Q ss_pred EEEEEEeCCeeeeeecCCCeEEEEecCcceecCCCCCCCCeEEEEeCCCcccccceEEEEEEEEeCCCEEEEEEEeeccc
Q 004366 523 IVESLLVNGKPVIKVSKGSDVEVLLNRTPFYAESGGQIGDYGFLYVTQGTNQQTAVVEVKDVKKSLGSVFVHKGTIREGV 602 (759)
Q Consensus 523 kVl~i~~~~~~v~~~~~g~~~~VvLD~T~FYpEgGGQ~~D~G~I~~~~~~~~~~~~~~V~dV~k~~~g~ivH~~~~~~g~ 602 (759)
+|+++..+++.+..+.+++..+||||+|||||||||||+|+|+|..++. .+.|.+|++. +|+++|.+....+.
T Consensus 465 kVlal~~~~~~~~~v~~~~~~~VVLD~T~FYpegGGQ~~D~G~I~~~~~------~~~V~dv~k~-~g~i~H~~~~~~g~ 537 (552)
T PF01411_consen 465 KVLALFKDGEFVAKVEEGEEGYVVLDKTPFYPEGGGQPGDTGTIIGDGG------EFEVTDVQKV-GGVILHIGEVESGS 537 (552)
T ss_dssp TT---TT--EEEEEEEEEETTEEEESEE-S--SBTTB----EEECCTTE------EEEEEEEEEE-TTEEEEEESSG-GG
T ss_pred eEEEEEeCCEEEeeecCCceEEEEECCccccCCCCCCCCCeEEEeecce------EEEEEEEEEE-CCEEEEEEeccCCC
Confidence 9999999888888888888899999999999999999999999998776 8999999999 69999999987788
Q ss_pred cCCCCEEEEEEcccc
Q 004366 603 LEVGREVEAIVDPKL 617 (759)
Q Consensus 603 l~~G~~V~~~VD~~r 617 (759)
+++|++|.++|||+|
T Consensus 538 l~~G~~V~~~VD~eR 552 (552)
T PF01411_consen 538 LKVGDEVTAEVDWER 552 (552)
T ss_dssp --TTSEEEEEE-HHH
T ss_pred CCCCCEEEEEecCCC
Confidence 999999999999987
No 10
>cd00673 AlaRS_core Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain. AlaRS is a homodimer. It is responsible for the attachment of alanine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its predicted structure and the presence of three characteristic sequence motifs.
Probab=100.00 E-value=6.8e-111 Score=851.77 Aligned_cols=231 Identities=55% Similarity=1.051 Sum_probs=225.6
Q ss_pred hHHHHHHHHHHHhhCCCeeecCccCcC-CCCccceeccccccccccccccCCCCCCCcccccCcccCCCccccCCCCCcc
Q 004366 50 GDSIRKRFLDFYASRGHKVLPSASLVP-EDPTVLLTIAGMLQFKPIFLGKVPRQVPRAATSQRCIRTNDVENVGRTSRHH 128 (759)
Q Consensus 50 ~~eiR~~Fl~fF~~~gH~~v~s~slvp-~d~tllf~nAGm~~fk~~f~g~~~p~~~r~~~~QkCiR~nDldnVG~t~rH~ 128 (759)
++|||++||+||++|||+++||||||| +|||||||||||+||||||+|.++||++|+|++|||||+|||||||+|+|||
T Consensus 1 ~~eiR~~fl~FF~~kgH~~v~s~slvp~dDptllFtnAGM~~Fkp~f~G~~~p~~~r~~~~QkCiR~~DienVG~t~rHh 80 (232)
T cd00673 1 ASEIRETFLSFFEKKGHTRVPSSPVVPRDDPTLLFTNAGMNQFKPIFLGEVPPPANRLVNSQKCIRAGDIDNVGKTGRHH 80 (232)
T ss_pred ChHHHHHHHHHHHhCCCEEeCCCCcCCCCCCchheeccchhhhhHHhcCCCCCCCCceeeeeeceecCChhhccccccch
Confidence 479999999999999999999999999 7999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCccCcccHHHHHHHHHHhhhcccCCCCCceEEEEeCChHHHHHHHHHhcCCCCCceeccCCCCCccCCCCCC
Q 004366 129 TFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGATG 208 (759)
Q Consensus 129 TfFEMlGn~SfgdYfK~eai~~awefLt~~l~l~~~rl~vTv~~~D~e~~~iW~~~~g~~~~~I~~~~~~dNfW~~G~~G 208 (759)
||||||||||||||||+|||+|||||||++||||++|||||||++|+||++||.+.+|||++||++++.+||||+||++|
T Consensus 81 TfFEMLGNfSFgdYFK~eaI~~awe~LT~~l~l~~~rl~vTv~~~dde~~~~w~~~~g~~~~~i~~~~~~dNfW~~G~~G 160 (232)
T cd00673 81 TFFEMLGNFSFGDYFKEEAIAFAWELLTEVLGLPKDRLYVSVFEGDDEEEAIWWWKIGLPGIRIERIGFKDNFWEMGGNG 160 (232)
T ss_pred hhhhhhcccchhhhhHHHHHHHHHHHHHhhcCCCccceEEEEeCCCHHHHHHHHHhhCCCHHHeeeCCccCCCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEEecCCCCCCCCCCCCCCCceEEEeeeecccccccCCCccccCccCcccccchHHHHHHHHhCC
Q 004366 209 PCGPCSEIYYDFHPDRGCSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERIARILQKV 280 (759)
Q Consensus 209 pcGPcsEI~~d~g~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~~~~Lp~k~IDTGmGlERl~~vlqg~ 280 (759)
|||||||||||+|+++++....+++|+|||||||||||||+|+++|++.|||+||||||||||||||||||+
T Consensus 161 PCGPcsEI~yd~g~~~~~~~~~~~~~~r~lEIWNlVFmqy~r~~~g~l~pLp~k~IDTGmGlERla~vlQg~ 232 (232)
T cd00673 161 PCGPCSEIFYDRGEERDAASLPNEDDDRYLEIWNLVFMQYNRDADGTYRPLPKKIVDTGMGLERLVWVLQGV 232 (232)
T ss_pred CCCCCEEEEEccCCCcCccccccCCCCCEEEEeeeeeeeeeccCCCCCccCCCCeeeCCcCHHHHHHHHcCC
Confidence 999999999999999887655668999999999999999999999999999999999999999999999996
No 11
>COG2872 Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain [General function prediction only]
Probab=100.00 E-value=5.7e-45 Score=375.91 Aligned_cols=217 Identities=30% Similarity=0.340 Sum_probs=192.8
Q ss_pred Cccccccc---cccceEEEEEEeCCeeeeeecCCCeEEEEecCcceecCCCCCCCCeEEEEeCCCcccccceEEEEEEEE
Q 004366 510 TEFLGYDT---LSAKAIVESLLVNGKPVIKVSKGSDVEVLLNRTPFYAESGGQIGDYGFLYVTQGTNQQTAVVEVKDVKK 586 (759)
Q Consensus 510 T~f~gY~~---~~~~akVl~i~~~~~~v~~~~~g~~~~VvLD~T~FYpEgGGQ~~D~G~I~~~~~~~~~~~~~~V~dV~k 586 (759)
|+.+||++ .+++|+|+++..+ .|+||+|+|||+|||||+|+|+|.+.++ ...|.++.+
T Consensus 2 T~~ly~~D~y~~e~~~~v~~v~~~-------------~i~ld~T~Fyp~~GGQp~D~G~l~~~~~------~~~~~~~~~ 62 (241)
T COG2872 2 TEKLYYDDSYLKEFEATVVDVEDN-------------EIVLDRTIFYPTGGGQPGDTGTLIWAGG------EYVVEDVTK 62 (241)
T ss_pred ccceeccccccccceEEEEEEeCC-------------eEEEEeccccCCCCCCcCCceEEEeCCc------eEEEEEEEe
Confidence 66778877 4789999999753 6999999999999999999999999988 888999998
Q ss_pred eCCCEEEEEEEeeccccCCCCEEEEEEccccchHHHHhccHHHHHHHHHHhHhCCcceeeeeeccCCcEEEEEecCCCCC
Q 004366 587 SLGSVFVHKGTIREGVLEVGREVEAIVDPKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLL 666 (759)
Q Consensus 587 ~~~g~ivH~~~~~~g~l~~G~~V~~~VD~~rR~~~mr~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~~R~DF~~~~~lt 666 (759)
. +..|+|++... ..+++|+.|.++|||+||+++||+|||+|||++++.+.++ ++..|.+++++++|+||+.+. +
T Consensus 63 ~-~~~I~H~~~~~-~~~~vG~~V~~~IDW~rRy~~mr~HTa~Hlls~~~~~~~~--~~~~g~~i~~d~~~iD~~~e~--~ 136 (241)
T COG2872 63 D-GEEIVHVLAEH-AKLKVGDKVKLKIDWERRYRHMRMHTALHLLSAVLYKVYG--ALTTGFEIGEDYARIDFDGED--T 136 (241)
T ss_pred c-ceEEEEEecCc-ccCCCCCEEEEEECcHHHHHHHhhhHHHHHHHHHhhcccc--ceeecceeccccccccccccc--c
Confidence 8 67899999864 5689999999999999999999999999999999999998 556899999999999999754 8
Q ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEcCHHHHHHhchhhhc-CC---CCCCcEEEEEECCccccccccCCccc----ccCc
Q 004366 667 DTELEEIERLINGWIGDANLLQTKVMALDDAKRAGAIAMF-GE---KYGEQVKISSKMYVLWRFLVCLWNFV----VEPM 738 (759)
Q Consensus 667 ~eel~~IE~~vNeiI~~~~pV~~~~~~~eEA~~~~~~~lf-~e---ky~~~VRVV~Ig~~~~d~~~CgGTHV----eIG~ 738 (759)
++.+.++++++|++|.+|+||...+++++||.+.+.+... .. .-.+.+|+|+|++ +|.+||||||| |||.
T Consensus 137 ~~~~~~v~~~~ne~v~~~~~v~~~~i~~EE~~~~p~~~~~~~~~~~~~~g~iRiV~I~d--id~qpCgGtHVk~T~EIG~ 214 (241)
T COG2872 137 EDEIEEVEALANELVKENLPVIIYFIPREEAEKLPGLVKLKNKVPPDVEGKIRIVEIGD--IDVQPCGGTHVKNTGEIGE 214 (241)
T ss_pred hhhHHHHHHHHHHHHHcCCeeeeeecCHHHHhhCcChhhhcccCCccccceEEEEEECC--eeccCCCCcccCCccceEE
Confidence 8999999999999999999999999999999987543222 21 1235899999999 99999999999 9999
Q ss_pred EEEEeeecCCCCcee
Q 004366 739 LTILLKSEPSKSFLS 753 (759)
Q Consensus 739 IkIl~~~~~gk~~~~ 753 (759)
|+|++.++|||+.+-
T Consensus 215 Iki~k~e~k~k~~~R 229 (241)
T COG2872 215 IKILKTEKKGKGNRR 229 (241)
T ss_pred EEEEEEEEecCceEE
Confidence 999999999998763
No 12
>PLN02961 alanine-tRNA ligase
Probab=100.00 E-value=1.4e-44 Score=372.84 Aligned_cols=201 Identities=24% Similarity=0.297 Sum_probs=170.4
Q ss_pred EEEEecCcceecCCCCCCCCeEEEEeCCCcccccceEEEEEEEEeCCCEEEEEEEeec------cccCCCCEEEEEEccc
Q 004366 543 VEVLLNRTPFYAESGGQIGDYGFLYVTQGTNQQTAVVEVKDVKKSLGSVFVHKGTIRE------GVLEVGREVEAIVDPK 616 (759)
Q Consensus 543 ~~VvLD~T~FYpEgGGQ~~D~G~I~~~~~~~~~~~~~~V~dV~k~~~g~ivH~~~~~~------g~l~~G~~V~~~VD~~ 616 (759)
+.|+||+|+|||||||||+|+|+|...++ ...++|.+|++. +|.++|++.... ++|++|++|.++|||+
T Consensus 3 ~~viLd~T~FYpegGGQp~D~G~i~~~~~----~~~~~V~~v~~~-~g~i~H~~~~~~~~~~~~~~l~~G~~V~~~ID~~ 77 (223)
T PLN02961 3 IALVLDRTIFHPQGGGQPSDTGRIVISGG----DTKFSVQDVRRK-DGVVYHYGVFEGSNPESASPFEAGDEVTVTVDES 77 (223)
T ss_pred eEEEeCCceEcCCCCCCCCcEEEEEecCC----CcEEEEEEEEEE-CCEEEEEEEecCcccccCCCCCCCCEEEEEECHH
Confidence 57999999999999999999999987432 126899999997 899999986542 4689999999999999
Q ss_pred cchHHHHhccHHHHHHHHHHhH-hCCcceeeeeeccCCcEEEEEecCCCCCHHHH----HHHHHHHHHHHhcCCCEEEEE
Q 004366 617 LRQRAKVHHTATHLLQAALKKV-IGQETSQAGSLVAFDRLRFDFNFHRPLLDTEL----EEIERLINGWIGDANLLQTKV 691 (759)
Q Consensus 617 rR~~~mr~HTAtHLL~aALr~v-lG~~v~q~Gs~v~~d~~R~DF~~~~~lt~eel----~~IE~~vNeiI~~~~pV~~~~ 691 (759)
||+.+||+|||+|||++||+++ +|.++.++|+++ ++.+++||. .+++.+++ .+||+.+|++|++++||++.+
T Consensus 78 rR~~~m~~HTa~HLL~~al~~~~~~~~~~~~g~~~-~~~~~v~~~--~~i~~~~~~~~~~~iE~~~N~~I~~~~~V~~~~ 154 (223)
T PLN02961 78 RRKLHSRLHSAGHLLDVCMARVGLGPLEPGKGYHF-PDGPFVEYK--GKIPQGELDSKQDELEAEANELIAEGGKVSAAV 154 (223)
T ss_pred HHhhhhccCcHHHHHHHHHHHcCCCcccccccccc-CCccceeec--ccCCHHHHHhHHHHHHHHHHHHHHcCCceeEEE
Confidence 9999999999999999999997 787677788885 568889986 46776554 799999999999999999999
Q ss_pred cCHHHHHHhchhhhc--CCCCCCcEEEEEECCccccccccCCccc----ccCcEEEEeeecCCCCceeeee
Q 004366 692 MALDDAKRAGAIAMF--GEKYGEQVKISSKMYVLWRFLVCLWNFV----VEPMLTILLKSEPSKSFLSRVL 756 (759)
Q Consensus 692 ~~~eEA~~~~~~~lf--~eky~~~VRVV~Ig~~~~d~~~CgGTHV----eIG~IkIl~~~~~gk~~~~~~~ 756 (759)
++++||++....+++ .++ .+.||||+|++ +|.+||||||| +||.|+|++.+ ++||.+ ||.
T Consensus 155 ~~~~ea~~~~~~~~~~~~~~-~~~vRiV~I~~--~d~~~CgGTHv~nT~eig~i~I~~~~-~~kg~~-Rv~ 220 (223)
T PLN02961 155 LPYDEAAELCGGSLPDYIAK-DSTPRIVKIGD--SPGCPCGGTHVADVSEITSVKVTQIR-VKKGVT-RVS 220 (223)
T ss_pred eCHHHHHHhcCCcCCCcCCC-CCceEEEEECC--CccCccCCcccCchhccccEEEEEEE-ecCCEE-EEE
Confidence 999999987433332 222 57899999998 89999999999 89999999986 456655 773
No 13
>KOG2105 consensus Predicted metal-dependent hydrolase, contains AlaS domain [General function prediction only]
Probab=99.96 E-value=3.1e-29 Score=257.99 Aligned_cols=193 Identities=22% Similarity=0.281 Sum_probs=157.3
Q ss_pred eEEEEecCcceecCCCCCCCCeEEEEeCCCcccccceEEEEEEEEeCCCEEEEEEEeeccccCCCCEEEEEEccccchHH
Q 004366 542 DVEVLLNRTPFYAESGGQIGDYGFLYVTQGTNQQTAVVEVKDVKKSLGSVFVHKGTIREGVLEVGREVEAIVDPKLRQRA 621 (759)
Q Consensus 542 ~~~VvLD~T~FYpEgGGQ~~D~G~I~~~~~~~~~~~~~~V~dV~k~~~g~ivH~~~~~~g~l~~G~~V~~~VD~~rR~~~ 621 (759)
.+.+.|.+|+.||||||||+|.|++. .+.|..|.+. |-..-|.+. ..+.+|.+|.+.|||+||.++
T Consensus 43 g~~i~lqdtiLfpegggqp~d~gf~~----------~v~V~~VsR~-G~~A~H~~~---~~iePGt~V~V~VD~qkR~D~ 108 (415)
T KOG2105|consen 43 GYEIELQDTILFPEGGGQPSDSGFLK----------IVEVSHVSRF-GLHAKHHVN---DYIEPGTTVEVAVDEQKRMDY 108 (415)
T ss_pred cceeeeeeeEeccCCCCCCCcccccc----------ceeEEEeecc-ccchhhccC---CCCCCCCeEEEEecHHHHhHH
Confidence 47899999999999999999999997 5678898887 555567765 579999999999999999999
Q ss_pred HHhccHHHHHHHHHHhHhCCcceeeeeeccCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEcCHHH--HHH
Q 004366 622 KVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLDTELEEIERLINGWIGDANLLQTKVMALDD--AKR 699 (759)
Q Consensus 622 mr~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~~R~DF~~~~~lt~eel~~IE~~vNeiI~~~~pV~~~~~~~eE--A~~ 699 (759)
|++||++|||.+++.+.|...+ .++.++.=+..+....+ ++|.||+..||+.+|+.|+..+||.+.+.++++ ..+
T Consensus 109 MQQHsGQHLitAvad~~fKlkT--tSWelG~~~sa~e~~~~-~mTaeqvaaieqsvNe~I~d~~~~~v~E~sl~d~eVeq 185 (415)
T KOG2105|consen 109 MQQHSGQHLITAVADHLFKLKT--TSWELGRFRSAIELDTP-SMTAEQVAAIEQSVNEKIRDRLPVNVRELSLDDPEVEQ 185 (415)
T ss_pred HHHhcchhHHHHHHHhhhccce--eeeeccceeeccccCCC-CccHHHHHHHHHHHHHHHHhccchheeecccCCcchhh
Confidence 9999999999999999887543 34444433344555554 699999999999999999999999999987764 344
Q ss_pred hchhhhcCCCCCCcEEEEEECCccccccccCCccc----ccCcEEEEeeecCCCCceeee
Q 004366 700 AGAIAMFGEKYGEQVKISSKMYVLWRFLVCLWNFV----VEPMLTILLKSEPSKSFLSRV 755 (759)
Q Consensus 700 ~~~~~lf~eky~~~VRVV~Ig~~~~d~~~CgGTHV----eIG~IkIl~~~~~gk~~~~~~ 755 (759)
...+.++ +.-.+.+|+|.|+| .|.+||||||| .|+.|+|++.+ +||-.||..
T Consensus 186 VS~~~~~-D~haG~iRvvnI~~--vDSN~CCGTHvs~~Sdl~vI~ILgte-kg~k~rtN~ 241 (415)
T KOG2105|consen 186 VSGRGLP-DDHAGPIRVVNIEG--VDSNMCCGTHVSNLSDLQVIKILGTE-KGKKNRTNL 241 (415)
T ss_pred ccCCCCc-ccccCceEEEeecC--ccCCccccccccchhhcceEEEeecc-ccccCccce
Confidence 4444433 23357899999999 79999999999 79999999996 666665543
No 14
>PLN02837 threonine-tRNA ligase
Probab=99.64 E-value=2.3e-15 Score=176.57 Aligned_cols=148 Identities=16% Similarity=0.232 Sum_probs=117.9
Q ss_pred CCEEEEEEccccchHHHHhccHHHHHHHHHHhHhCCcceeeeeeccCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhcCC
Q 004366 606 GREVEAIVDPKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLDTELEEIERLINGWIGDAN 685 (759)
Q Consensus 606 G~~V~~~VD~~rR~~~mr~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~~R~DF~~~~~lt~eel~~IE~~vNeiI~~~~ 685 (759)
-..|.+.+|...|...+.+|||+|||++|++++||....+.|..+ ++++++||.. .++|++++.+||+.||++|.+|+
T Consensus 29 ~~~~~~~~~~~~~~~~~~~HSa~HLL~~Av~~l~~~~~~~ig~~~-~~g~y~D~~~-~~lt~edl~~IEk~m~~iI~~n~ 106 (614)
T PLN02837 29 PERVVLPTNESSEKLLKIRHTCAHVMAMAVQKLFPDAKVTIGPWI-ENGFYYDFDM-EPLTDKDLKRIKKEMDRIISRNL 106 (614)
T ss_pred CceEEEEeccChhhHHHHHHHHHHHHHHHHHHHcCCcEEEECCcc-CCCEEEEecC-CCCCHHHHHHHHHHHHHHHHcCC
Confidence 358999999999999999999999999999999986444556555 5789999997 58999999999999999999999
Q ss_pred CEEEEEcCHHHHHHhchh-------hhcCCCCCCcEEEEEECCccccccccCCccc----cc--CcEEEEeeec---CC-
Q 004366 686 LLQTKVMALDDAKRAGAI-------AMFGEKYGEQVKISSKMYVLWRFLVCLWNFV----VE--PMLTILLKSE---PS- 748 (759)
Q Consensus 686 pV~~~~~~~eEA~~~~~~-------~lf~eky~~~VRVV~Ig~~~~d~~~CgGTHV----eI--G~IkIl~~~~---~g- 748 (759)
||+..+++++||.+.... .++.....+.||||+||| .+.++|+|||| +| +.++|+..+- .|
T Consensus 107 pI~~~~v~~eEA~~~f~~~~~~~k~~Ll~~~~~~~Iriy~ig~--~~~D~c~GpHv~sTg~I~~~~~kl~~~~g~ywrg~ 184 (614)
T PLN02837 107 PLVREEVSREEAQKRIMAINEPYKLEILEGIKEEPITIYHIGE--EWWDLCAGPHVERTGKINKKAVELESVAGAYWRGD 184 (614)
T ss_pred CEEEEEecHHHHHHHHHHcCCchhHHHhccCCCCeEEEEEECC--eEEEecCCCCcccccccccceEEEEEeehhhhccc
Confidence 999999999999875311 111111135699999997 35778999999 56 6667666642 22
Q ss_pred --CCceeeeec
Q 004366 749 --KSFLSRVLH 757 (759)
Q Consensus 749 --k~~~~~~~~ 757 (759)
.-+|.|||.
T Consensus 185 ~~~~~l~ri~g 195 (614)
T PLN02837 185 EKNQMLQRIYG 195 (614)
T ss_pred ccCcceEEEEE
Confidence 467888875
No 15
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=99.63 E-value=2.6e-15 Score=175.21 Aligned_cols=133 Identities=16% Similarity=0.233 Sum_probs=107.8
Q ss_pred HHHhccHHHHHHHHHHhHhCCcceeeeeeccCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEcCHHHHHHh
Q 004366 621 AKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLDTELEEIERLINGWIGDANLLQTKVMALDDAKRA 700 (759)
Q Consensus 621 ~mr~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~~R~DF~~~~~lt~eel~~IE~~vNeiI~~~~pV~~~~~~~eEA~~~ 700 (759)
-+.+|||+|||++|++++||.. ...+++..++++++||+...++|++++.+||+.||++|++|+||+..+++++||.++
T Consensus 7 ~~~~hS~~hlL~~A~~~~~~~~-~~~~~~~~~~g~~~d~~~~~~it~e~l~~Ie~~m~~lI~~~~pi~~~~v~~eeA~~~ 85 (575)
T PRK12305 7 EVIRHSAAHVLAQAVQELFPDA-KLGIGPPIEDGFYYDFDVPEPFTPEDLKKIEKKMKKIIKRGLPFEREEVSREEAREE 85 (575)
T ss_pred HHHHHHHHHHHHHHHHHHcCCc-eEEeCCCcCCeEEEEeeCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecHHHHHHh
Confidence 4679999999999999999853 445666668999999998778999999999999999999999999999999999986
Q ss_pred ch-----hhhcCCCCCCcEEEEEECCccccccccCCccc----ccCcEEEEeeec------CCCCceeeeec
Q 004366 701 GA-----IAMFGEKYGEQVKISSKMYVLWRFLVCLWNFV----VEPMLTILLKSE------PSKSFLSRVLH 757 (759)
Q Consensus 701 ~~-----~~lf~eky~~~VRVV~Ig~~~~d~~~CgGTHV----eIG~IkIl~~~~------~gk~~~~~~~~ 757 (759)
.. ..++.....+.||||+||+ + .++|+|||| +||.|+|++.+. .....+.||+-
T Consensus 86 f~~~~~k~~l~~~~~~~~vri~~ig~--~-~d~c~Gthv~~T~~i~~f~i~~~~~~~~~~~~~~~~l~Ri~g 154 (575)
T PRK12305 86 FANEPYKLELIDDIPEEGITIYDNGD--F-EDLCRGPHVPNTKFIKAFKLTSVAGAYWRGDEKNPQLQRIYG 154 (575)
T ss_pred CCcChhHHHhhhhcCCCeEEEEEECC--E-EEECCCCCCCCccCCceeEEEEEcceEECCCCCCcceEEEEE
Confidence 42 1223333345799999998 3 478999999 799999988832 11337888874
No 16
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=99.52 E-value=1.5e-13 Score=162.19 Aligned_cols=152 Identities=19% Similarity=0.240 Sum_probs=119.8
Q ss_pred ccCCCCEEEEEEccccchHHHHhccHHHHHHHHHHhHhCCcceeeeeeccCCcEEEEEecCCCCCHHHHHHHHHHHHHHH
Q 004366 602 VLEVGREVEAIVDPKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLDTELEEIERLINGWI 681 (759)
Q Consensus 602 ~l~~G~~V~~~VD~~rR~~~mr~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~~R~DF~~~~~lt~eel~~IE~~vNeiI 681 (759)
.+..+..|+..-....+-..+.+|||+|||++|++++||. ....+++..++++++||+...++|++++.+||+.||++|
T Consensus 50 ~l~~d~~Vefi~~~~~~g~~~y~hS~~hll~~A~~~~~~~-~~~~~~~~~~~g~y~d~~~~~~lt~e~l~~Ie~~m~~iI 128 (638)
T PRK00413 50 PIEEDASLEIITAKDEEGLEIIRHSAAHLLAQAVKRLYPD-AKLTIGPVIENGFYYDFDRERPFTPEDLEAIEKEMKEII 128 (638)
T ss_pred cccCCCceeeeeccchhhHHHHhhhHHHHHHHHHHHHcCC-ceEEECCccCCeEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 4566777887777777788889999999999999999985 345566666889999999877899999999999999999
Q ss_pred hcCCCEEEEEcCHHHHHHhchh-------hhcCCCCC-CcEEEEEECCccccccccCCccc----ccCcEEEEeeec---
Q 004366 682 GDANLLQTKVMALDDAKRAGAI-------AMFGEKYG-EQVKISSKMYVLWRFLVCLWNFV----VEPMLTILLKSE--- 746 (759)
Q Consensus 682 ~~~~pV~~~~~~~eEA~~~~~~-------~lf~eky~-~~VRVV~Ig~~~~d~~~CgGTHV----eIG~IkIl~~~~--- 746 (759)
++|+||+..+++++||.++... .++..... +.|||+++++ ..++|+|||| +||.|+|++.+.
T Consensus 129 ~~~~pi~~~~v~~~eA~~~f~~~~~~~k~~ll~~~~~~~~v~iy~~~~---~~d~c~G~hv~~Tg~i~~f~i~~~~~g~~ 205 (638)
T PRK00413 129 KENYPIEREVVSREEAIELFKDRGEPYKVELIEEIPEDEEISLYRQGE---FVDLCRGPHVPSTGKIKAFKLLKVAGAYW 205 (638)
T ss_pred hcCCCEEEEEecHHHHHHHHHhcCCccHHHHhhcCCCCCeEEEEEECC---EEEECCCCCCCcccCCceeEEEEEcceEE
Confidence 9999999999999999885311 11111112 3799999998 2578999999 788888887742
Q ss_pred ---CCCCceeeeec
Q 004366 747 ---PSKSFLSRVLH 757 (759)
Q Consensus 747 ---~gk~~~~~~~~ 757 (759)
.....++||+.
T Consensus 206 l~~~~~~~l~Ri~g 219 (638)
T PRK00413 206 RGDSKNKMLQRIYG 219 (638)
T ss_pred cCCCcchheEEEEe
Confidence 11336778764
No 17
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=99.43 E-value=1.3e-12 Score=154.50 Aligned_cols=132 Identities=15% Similarity=0.206 Sum_probs=104.5
Q ss_pred HHHhccHHHHHHHHHHhHhCCcceeeeeeccCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEcCHHHHHHh
Q 004366 621 AKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLDTELEEIERLINGWIGDANLLQTKVMALDDAKRA 700 (759)
Q Consensus 621 ~mr~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~~R~DF~~~~~lt~eel~~IE~~vNeiI~~~~pV~~~~~~~eEA~~~ 700 (759)
..-+|||+|||++|++++||... ....+..++++++||+...++|++++.+||+.||++|.+|+||+..+++++||.+.
T Consensus 73 ~iy~hS~~hlL~~A~~~~~~~~~-~~i~~~~~~g~y~d~~~~~~it~edl~~Ie~~m~eiI~~~~pI~~~~v~~eeA~~~ 151 (639)
T PRK12444 73 EIARHSAAHILAQAVKRLYGDVN-LGVGPVIENGFYYDMDLPSSVNVEDLRKIEKEMKKIINENIKIERVEVSREEAAKL 151 (639)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcE-EEeCCcCCCeEEEEEeCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecHHHHHHH
Confidence 46799999999999999999743 33334448899999998778999999999999999999999999999999999885
Q ss_pred chh-------hhcCCCC-CCcEEEEEECCccccccccCCccc----ccCcEEEEeeecCC-------CCceeeeec
Q 004366 701 GAI-------AMFGEKY-GEQVKISSKMYVLWRFLVCLWNFV----VEPMLTILLKSEPS-------KSFLSRVLH 757 (759)
Q Consensus 701 ~~~-------~lf~eky-~~~VRVV~Ig~~~~d~~~CgGTHV----eIG~IkIl~~~~~g-------k~~~~~~~~ 757 (759)
..- .++.... .+.|||+++++ ..+.|+|||| +|+.++|++.+ .| ..+|+|++.
T Consensus 152 F~~~~~~~K~~ll~~~~~~~~v~iy~~~~---~~D~c~G~hv~sTg~ik~f~l~~~~-~g~~~g~~~~~~l~Ri~g 223 (639)
T PRK12444 152 FQEMNDRLKLELLEAIPSGESITLYKQGE---FVDLCRGPHLPSTGYLKAFQLTHVS-GAYWRGDSNNQVLQRIYG 223 (639)
T ss_pred HhhcCCchHHHHHhcCCCCCeEEEEEECC---EEEEcCCcCCCCCCCCceeEEEEEc-ceEEcCCCCCcceEEEEE
Confidence 210 1221111 24699999998 3567999999 68888877764 22 458999875
No 18
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=99.42 E-value=9.2e-13 Score=153.51 Aligned_cols=132 Identities=19% Similarity=0.242 Sum_probs=105.5
Q ss_pred hccHHHHHHHHHHhHhCCcceeeeeeccCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEcCHHHHHHhch-
Q 004366 624 HHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLDTELEEIERLINGWIGDANLLQTKVMALDDAKRAGA- 702 (759)
Q Consensus 624 ~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~~R~DF~~~~~lt~eel~~IE~~vNeiI~~~~pV~~~~~~~eEA~~~~~- 702 (759)
+|||+|||++|++++++....+.|+.+ ++++++||+...++|++++.+||+.||++|.+++||....++++||.+...
T Consensus 1 ~HS~~hLl~~Al~~~~~~~~~~~~~~i-~~g~~~df~~~~~~t~eel~~Ie~~m~~lI~~~~pi~~~~~~~eeA~~~f~~ 79 (563)
T TIGR00418 1 RHSIAHLLAEALKQLYPDVKLAIGPVV-EDGFYYDFELDRSFTQEDLEKIEKDMKEIAKKNYPVAKLSVSLEEALEAFKV 79 (563)
T ss_pred CChHHHHHHHHHHHHcCCcEEEEcCCc-CCCceecccCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEECHHHHHHHHhc
Confidence 599999999999999987656778777 556999999877899999999999999999999999999999999998643
Q ss_pred -----hhhcCCC-CCCcEEEEEECCccccccccCCccc----ccCcEEEEeee------cCCCCceeeeecc
Q 004366 703 -----IAMFGEK-YGEQVKISSKMYVLWRFLVCLWNFV----VEPMLTILLKS------EPSKSFLSRVLHL 758 (759)
Q Consensus 703 -----~~lf~ek-y~~~VRVV~Ig~~~~d~~~CgGTHV----eIG~IkIl~~~------~~gk~~~~~~~~~ 758 (759)
..++.+. +.+.|||+++++ +..+.|.|||| .|+.++|.+.. .+..+.|.||+.+
T Consensus 80 ~~~~k~~Ll~~~~~~~~v~vy~~g~--~~~d~~~G~~v~~Tg~i~~f~l~~~~~g~~l~~~~~~~l~Ri~g~ 149 (563)
T TIGR00418 80 LEPYKLELLDEIPNGVKRTPYGWGK--AFVDLCKGPHLPNTSFIKAFKLEKVAGAYWRGDSKNKMLQRIYGT 149 (563)
T ss_pred cChhHHHHHhcCCCCCeEEEEEeCC--EEEEEcCCCcCCCCCCCceeEEEEeccceEeEcCCCCceEeeeec
Confidence 1222332 446799999998 57899999999 45555665443 1123578888653
No 19
>PLN02908 threonyl-tRNA synthetase
Probab=99.21 E-value=2e-10 Score=136.81 Aligned_cols=135 Identities=15% Similarity=0.192 Sum_probs=104.9
Q ss_pred HHHHhccHHHHHHHHHHhHhCCcceeeeeeccC-CcEEEEEecC-CCCCHHHHHHHHHHHHHHHhcCCCEEEEEcCHHHH
Q 004366 620 RAKVHHTATHLLQAALKKVIGQETSQAGSLVAF-DRLRFDFNFH-RPLLDTELEEIERLINGWIGDANLLQTKVMALDDA 697 (759)
Q Consensus 620 ~~mr~HTAtHLL~aALr~vlG~~v~q~Gs~v~~-d~~R~DF~~~-~~lt~eel~~IE~~vNeiI~~~~pV~~~~~~~eEA 697 (759)
.-+.+||++|||.+|++++||.++ ..|..+++ +.+++||... ..+|++++.+||+.||++|.+++|++..+++++||
T Consensus 119 ~~~y~hS~ahlL~~A~~~~~~~~l-~ig~~i~~~~Gfy~d~~~~~~~~t~edl~~Ie~~m~~iI~~~~pi~r~~v~~eeA 197 (686)
T PLN02908 119 RDTFWHSSAHILGEALELEYGCKL-CIGPCTTRGEGFYYDAFYGDRTLNEEDFKPIEARAEKAVKEKQPFERIEVTREEA 197 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCeE-EecCccccCCcEEEEeecCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEEcHHHH
Confidence 457899999999999999998655 35656654 6779998854 47999999999999999999999999999999999
Q ss_pred HHhch-----hhhcCCCC-CCcEEEEEECCccccccccCCccc----ccCcEEEEeeec---CC---CCceeeeecc
Q 004366 698 KRAGA-----IAMFGEKY-GEQVKISSKMYVLWRFLVCLWNFV----VEPMLTILLKSE---PS---KSFLSRVLHL 758 (759)
Q Consensus 698 ~~~~~-----~~lf~eky-~~~VRVV~Ig~~~~d~~~CgGTHV----eIG~IkIl~~~~---~g---k~~~~~~~~~ 758 (759)
.++.. ..++.... .+.|+|+++|+ .++.|.|||| .|+.++|+..+. .| ...|.||+.+
T Consensus 198 ~e~F~~~~~K~~ll~~~~~~~~v~vY~~g~---~~D~c~Gphv~sTg~ik~f~l~~~~~~~~lg~~~~~~lqRi~G~ 271 (686)
T PLN02908 198 LEMFSENKFKVEIINDLPEDATITVYRCGP---LVDLCRGPHIPNTSFVKAFACLKASSAYWRGDVDRESLQRVYGI 271 (686)
T ss_pred HHHHhhCCcHHHHHhhCCCCCeeEEEEECC---EEEecCCCCCCCCCccceeEEEEecceEEcCCCcchhhEEEeee
Confidence 97532 11222111 24699999998 3667999999 688888877752 23 3578999854
No 20
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.77 E-value=4.1e-08 Score=114.13 Aligned_cols=131 Identities=18% Similarity=0.275 Sum_probs=103.3
Q ss_pred HHHHhccHHHHHHHHHHhHhCCcceeeeeeccCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEcCHHHHHH
Q 004366 620 RAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLDTELEEIERLINGWIGDANLLQTKVMALDDAKR 699 (759)
Q Consensus 620 ~~mr~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~~R~DF~~~~~lt~eel~~IE~~vNeiI~~~~pV~~~~~~~eEA~~ 699 (759)
.-.-.||++|||..|+.++++. ...| .+-++.+++||....++|++++.+||..|+++|.+++++....+++++|++
T Consensus 26 ~~~~rhs~ah~l~~av~~l~p~--~~~g-p~ie~gfyyd~~~~~~~~~~dl~~ie~~m~~i~~~~~~~~~~~~~~e~a~~ 102 (589)
T COG0441 26 LEIIRHSCAHVLAQAVKRLYPD--VTIG-PVIEEGFYYDFDVKEPITPEDLLKIEKEMKEIAKENLPIEREVVSREEARA 102 (589)
T ss_pred hhhhhhHHHHHHHHHHHHhCCC--cccc-CcccceeEEeeccCCCCCHHHHHHHHHHHHHHHHhcCceEEEEecHHHHHH
Confidence 3456899999999999999987 3456 666899999999988899999999999999999999999999999999987
Q ss_pred hch---hhhcCCCCCCcEEEEEECCccccccccCCccc-ccC--cEEEEeeec------CCCCceeeeec
Q 004366 700 AGA---IAMFGEKYGEQVKISSKMYVLWRFLVCLWNFV-VEP--MLTILLKSE------PSKSFLSRVLH 757 (759)
Q Consensus 700 ~~~---~~lf~eky~~~VRVV~Ig~~~~d~~~CgGTHV-eIG--~IkIl~~~~------~gk~~~~~~~~ 757 (759)
... ..+..++ +..+-+.+-+. ..++|.|+|| +.| .+|+++++- +..-+|.|+|.
T Consensus 103 ~f~~yK~~~i~~~-~~~~s~y~~~~---~~dlc~gph~~~t~~i~fkl~~~~~ayw~g~~~~~~l~riyg 168 (589)
T COG0441 103 PFGPYKAELIDCK-GHPLSEYSQGE---FVDLCRGPHVPSTGKIAFKLLKLAGAYWRGDENNEMLQRIYG 168 (589)
T ss_pred HhhhhHHHHHhcC-CCCceeEecCc---cccccCCCCCCccceEEEEEEEecchhhccCCCCcceeEEec
Confidence 532 0111111 36678888776 6789999999 666 458887752 33567888874
No 21
>PF07973 tRNA_SAD: Threonyl and Alanyl tRNA synthetase second additional domain; InterPro: IPR012947 The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer. Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and this SAD domain (the second additional domain). The second additional domain is comprised of a pair of perpendicularly orientated antiparallel beta sheets, of four and three strands, respectively, that surround a central alpha helix that forms the core of the domain [].; GO: 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3KEW_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A 1NYQ_B 1NYR_A 2ZTG_A 2ZZF_A ....
Probab=98.56 E-value=4.5e-08 Score=76.39 Aligned_cols=40 Identities=20% Similarity=0.189 Sum_probs=30.1
Q ss_pred EEEEEECCccccccccCCccc----ccCcEEEEeeecCCCCceeeee
Q 004366 714 VKISSKMYVLWRFLVCLWNFV----VEPMLTILLKSEPSKSFLSRVL 756 (759)
Q Consensus 714 VRVV~Ig~~~~d~~~CgGTHV----eIG~IkIl~~~~~gk~~~~~~~ 756 (759)
||||+|++ +|.+||||||| +||.|+|++.+.++++ ++|++
T Consensus 1 vRvv~i~~--~~~~~C~GtHv~~T~~i~~~~i~~~~~~~~~-~~RI~ 44 (44)
T PF07973_consen 1 VRVVRIGD--FDVDLCGGTHVPNTGEIGHFKILKGESKGKG-LRRIY 44 (44)
T ss_dssp EEEEEETT--TEEEEESS---SBGGGG-CEEEEEEEEEETT-EEEEE
T ss_pred CEEEEECC--eeEECCCCcccCChhEECcEEEEEeEEEcCC-cEEeC
Confidence 79999998 89999999999 8999999987766655 56664
No 22
>smart00863 tRNA_SAD Threonyl and Alanyl tRNA synthetase second additional domain. The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer. Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and this SAD domain (the second additional domain). The second additional domain is comprised of a pair of perpendicularly orientated antiparallel beta sheets, of four and three strands, respectively, that surround a central alpha helix that forms the core of the domain.
Probab=98.53 E-value=7.7e-08 Score=74.58 Aligned_cols=40 Identities=23% Similarity=0.164 Sum_probs=34.7
Q ss_pred EEEEEECCccccccccCCccc----ccCcEEEEeeecCCCCceeeee
Q 004366 714 VKISSKMYVLWRFLVCLWNFV----VEPMLTILLKSEPSKSFLSRVL 756 (759)
Q Consensus 714 VRVV~Ig~~~~d~~~CgGTHV----eIG~IkIl~~~~~gk~~~~~~~ 756 (759)
||+|.|++ +|.+||+|||| +||.|+|++.+.++++ +.|++
T Consensus 1 vriv~i~~--~~~~~C~GtHv~~t~~I~~i~i~~~~~~~~~-~~Ri~ 44 (44)
T smart00863 1 VRVVSIGD--FDVELCGGTHVPNTGEIGAFKILSVSGAYWG-LQRIY 44 (44)
T ss_pred CEEEEECC--EEEECCCCcccCChhhCcEEEEEEEeeeecC-eEEeC
Confidence 69999998 89999999999 8999999999866665 67763
No 23
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ.
Probab=96.20 E-value=0.018 Score=57.80 Aligned_cols=175 Identities=23% Similarity=0.248 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHhhCCCeeecCccCcCC-C--Cc------cceec---ccccccccccc-ccC-------CCCCCCccccc
Q 004366 51 DSIRKRFLDFYASRGHKVLPSASLVPE-D--PT------VLLTI---AGMLQFKPIFL-GKV-------PRQVPRAATSQ 110 (759)
Q Consensus 51 ~eiR~~Fl~fF~~~gH~~v~s~slvp~-d--~t------llf~n---AGm~~fk~~f~-g~~-------~p~~~r~~~~Q 110 (759)
+.+.+.+-++|.++|+..+-++++++. + .. +.+.| ..+..++|-.+ +.. ....-|+...+
T Consensus 3 ~~~~~~~r~~l~~~Gf~Ev~t~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~LR~s~~~~l~~~~~~n~~~~~~~lfeig 82 (211)
T cd00768 3 SKIEQKLRRFMAELGFQEVETPIVEREPLLEKAGHEPKDLLPVGAENEEDLYLRPTLEPGLVRLFVSHIRKLPLRLAEIG 82 (211)
T ss_pred HHHHHHHHHHHHHcCCEEeEcceecHHHHHHHcCccHhheeeeecCCCCEEEECCCCcHHHHHHHHhhcccCCEEEEEEc
Confidence 467888899999999999999998872 1 00 11111 11112222111 100 00112677888
Q ss_pred CcccCCCccccCCCCCcccccccccCCccCccc-----HHHHHHHHHHhhhcccCCCCCceEEEEeCChHHHHHHHHHhc
Q 004366 111 RCIRTNDVENVGRTSRHHTFFEMLGNFSFGDYF-----KKEAIQWAWEFSTVEFGLPANRLWISVYEDDDEAFEIWNKEV 185 (759)
Q Consensus 111 kCiR~nDldnVG~t~rH~TfFEMlGn~SfgdYf-----K~eai~~awefLt~~l~l~~~rl~vTv~~~D~e~~~iW~~~~ 185 (759)
+|.|..+- .-+ .+|..-|.|+|-..+|... -.+++..++++|. .+|++.+-.
T Consensus 83 ~vfr~e~~-~~~--~~~~~ef~~l~~~~~g~~~~~~~~~~~~~~~~~~~l~-~lg~~~~~~------------------- 139 (211)
T cd00768 83 PAFRNEGG-RRG--LRRVREFTQLEGEVFGEDGEEASEFEELIELTEELLR-ALGIKLDIV------------------- 139 (211)
T ss_pred ceeecCCC-ccc--cccceeEEEcCEEEEcCCchhHHHHHHHHHHHHHHHH-HcCCCcceE-------------------
Confidence 89988542 111 3677889999999998644 3678888888885 667632211
Q ss_pred CCCCCceeccCCCCCccCCCCCCCCCCceEEEEecCCCCCCCCCCCCCCCceEEEeeeecccccc---------cCCCcc
Q 004366 186 GVPVEHIKRMGADDNFWNSGATGPCGPCSEIYYDFHPDRGCSDVDLGDDTRFIEFYNLVFMQYNK---------KDDGSL 256 (759)
Q Consensus 186 g~~~~~I~~~~~~dNfW~~G~~GpcGPcsEI~~d~g~~~~~~~~~~~~~~r~lEiwNlVFmq~~~---------~~~g~~ 256 (759)
+.. .....||. +.+|+|.+|+++... .|..||+++-...-+. +++++.
T Consensus 140 ------~~~-~~~~~~~~----~~~g~~~~i~~~~~~------------~~~~eig~~g~~~~~~~~~~~l~~~~~~~~~ 196 (211)
T cd00768 140 ------FVE-KTPGEFSP----GGAGPGFEIEVDHPE------------GRGLEIGSGGYRQDEQARAADLYFLDEALEY 196 (211)
T ss_pred ------EEe-cCchhhcc----ccCCceEEEEEEccC------------CCeEEEeeceeecCchhHhhhhheecccccc
Confidence 110 11223442 478999999997542 2456777665443222 233433
Q ss_pred ccCccCcccccchHHHH
Q 004366 257 EPLKQKNIDTGLGLERI 273 (759)
Q Consensus 257 ~~Lp~k~IDTGmGlERl 273 (759)
. .| .+|=.|+|+||+
T Consensus 197 ~-~p-~~~~~~~~~~R~ 211 (211)
T cd00768 197 R-YP-PTIGFGLGLERL 211 (211)
T ss_pred c-Cc-eeecCccCccCC
Confidence 3 44 566667999995
No 24
>PRK09348 glyQ glycyl-tRNA synthetase subunit alpha; Validated
Probab=95.73 E-value=0.16 Score=53.65 Aligned_cols=174 Identities=26% Similarity=0.298 Sum_probs=105.9
Q ss_pred CCCChHHHHHHHHHHHhhCCCeeecCccCcCCCCccceecccccccccc-ccccCCCCCCCcccccCcccCCCc---ccc
Q 004366 46 FPSSGDSIRKRFLDFYASRGHKVLPSASLVPEDPTVLLTIAGMLQFKPI-FLGKVPRQVPRAATSQRCIRTNDV---ENV 121 (759)
Q Consensus 46 ~~~~~~eiR~~Fl~fF~~~gH~~v~s~slvp~d~tllf~nAGm~~fk~~-f~g~~~p~~~r~~~~QkCiR~nDl---dnV 121 (759)
++|+-.+|-.+--+|..++|..++-++.+= +.| -.|-|. |+..-.|..-+++-+|+|.|-.|= +|=
T Consensus 2 ~~~~fQ~iI~~Lq~fWa~~GC~i~qPyD~E--------vGA--GT~~P~Tflr~Lgpepw~vaYvqPsRRP~DGRYGeNP 71 (283)
T PRK09348 2 KKMTFQDIILTLQDYWADQGCVILQPYDME--------VGA--GTFHPATFLRALGPEPWNAAYVQPSRRPTDGRYGENP 71 (283)
T ss_pred CCCcHHHHHHHHHHHHHHCCCEEECCcccc--------ccc--ccCCHHHHHHhcCCCccccccccCCCCCCCCCcCCCc
Confidence 468999999999999999999999877653 233 366773 344434444568999999998662 232
Q ss_pred CCCCCcccccccccCCccCcccHHHHHHHHHHhhhcccCCCCCceEEEEeCChHHHHHHHHHhcCCCCCceeccCCCCCc
Q 004366 122 GRTSRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNF 201 (759)
Q Consensus 122 G~t~rH~TfFEMlGn~SfgdYfK~eai~~awefLt~~l~l~~~rl~vTv~~~D~e~~~iW~~~~g~~~~~I~~~~~~dNf 201 (759)
.+=- ||.=|..+=-=|-.+ ..+.=.+- .+.+||||.. |=++| -+||
T Consensus 72 NRLq-~y~QfQVilKPsP~n-----iQelYL~S-L~~lGid~~~-------------------------hDIRF-VEDn- 117 (283)
T PRK09348 72 NRLQ-HYYQFQVILKPSPDN-----IQELYLGS-LEALGIDPLE-------------------------HDIRF-VEDN- 117 (283)
T ss_pred hhhh-hheeeEEEEcCCCcc-----HHHHHHHH-HHHhCCCccc-------------------------cceeE-eecC-
Confidence 3222 444344443334333 01111111 1246666653 22444 2454
Q ss_pred cCCCCC-CCCCCceEEEEecCCCCCCCCCCCCCCCceEEEeeeecccccccCCCccccCccCcccccchHHHHHHHHhCC
Q 004366 202 WNSGAT-GPCGPCSEIYYDFHPDRGCSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERIARILQKV 280 (759)
Q Consensus 202 W~~G~~-GpcGPcsEI~~d~g~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~~~~Lp~k~IDTGmGlERl~~vlqg~ 280 (759)
|+ -|| |--|===|+--| .+||=-.- =|.+ -.| .++..-.+.-=+||||||+.|||+
T Consensus 118 WE-sPTLGAwGlGWEVWld-----------------GMEITQFT--YFQQ-vGG--i~~~pv~~EITYGLERiamylQ~v 174 (283)
T PRK09348 118 WE-SPTLGAWGLGWEVWLD-----------------GMEVTQFT--YFQQ-VGG--IECKPVTGEITYGLERLAMYLQGV 174 (283)
T ss_pred CC-CCcccccccceEEEEC-----------------Ceeeeeee--eeee-eCC--eeccccceeeehhHHHHHHHHhCC
Confidence 65 232 666656676664 26775332 2222 333 335556677789999999999999
Q ss_pred CCcccc
Q 004366 281 PNNYET 286 (759)
Q Consensus 281 ~s~ydt 286 (759)
.|+||.
T Consensus 175 d~v~dl 180 (283)
T PRK09348 175 DNVYDL 180 (283)
T ss_pred Cceeee
Confidence 999997
No 25
>TIGR00388 glyQ glycyl-tRNA synthetase, tetrameric type, alpha subunit. This tetrameric form of glycyl-tRNA synthetase (2 alpha, 2 beta) is found in the majority of completed eubacterial genomes, with the two genes fused in a few species. A substantially different homodimeric form (not recognized by this model) replaces this form in the Archaea, animals, yeasts, and some eubacteria.
Probab=95.69 E-value=0.12 Score=54.66 Aligned_cols=172 Identities=22% Similarity=0.318 Sum_probs=103.0
Q ss_pred CChHHHHHHHHHHHhhCCCeeecCccCcCCCCccceecccccccccc-ccccCCCCCCCcccccCcccCCCc---cccCC
Q 004366 48 SSGDSIRKRFLDFYASRGHKVLPSASLVPEDPTVLLTIAGMLQFKPI-FLGKVPRQVPRAATSQRCIRTNDV---ENVGR 123 (759)
Q Consensus 48 ~~~~eiR~~Fl~fF~~~gH~~v~s~slvp~d~tllf~nAGm~~fk~~-f~g~~~p~~~r~~~~QkCiR~nDl---dnVG~ 123 (759)
||-.+|-.+--+|..++|..++-++.+= +.| -.|-|. |+..-.|..-+++-+|+|.|-.|= +|=.+
T Consensus 1 m~fQ~iI~~Lq~fWa~~GC~i~QPyD~E--------vGA--GT~hPaTflralgpepw~vAYVqPsRRP~DGRYGeNPNR 70 (293)
T TIGR00388 1 QTFQGLILKLQEYWANQGCLIVQPYDME--------KGA--GTMHPMTFLRSLGPEPWAVAYVEPSRRPTDGRYGENPNR 70 (293)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEcCcccc--------ccc--ccCCHHHHHHhcCCCcceeccccCCCCCCCCCCCCCchh
Confidence 5778889999999999999999877653 233 367773 344434444568999999999663 34443
Q ss_pred CCCcccccccccCCccCcccHHHHHHHHHHhhhcccCCCCCceEEEEeCChHHHHHHHHHhcCCCCCceeccCCCCCccC
Q 004366 124 TSRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWN 203 (759)
Q Consensus 124 t~rH~TfFEMlGn~SfgdYfK~eai~~awefLt~~l~l~~~rl~vTv~~~D~e~~~iW~~~~g~~~~~I~~~~~~dNfW~ 203 (759)
-- ||.=|..+=-=|-.+ ..+.=.+-| +.+||||.. |=+|| -+|| |+
T Consensus 71 Lq-~yyQfQVilKPsP~n-----iQelYL~SL-~~lGid~~~-------------------------hDIRF-VEDn-WE 116 (293)
T TIGR00388 71 LQ-HYYQFQVVIKPSPDN-----IQELYLDSL-RALGIDPTE-------------------------HDIRF-VEDN-WE 116 (293)
T ss_pred hh-heeeeEEEECCCCcc-----HHHHHHHHH-HHhCCCccc-------------------------cCeeE-eecC-CC
Confidence 33 343344443334333 011111111 245666653 23444 2454 65
Q ss_pred CCCC-CCCCCceEEEEecCCCCCCCCCCCCCCCceEEEeeeecccccccCCCccccCccCcccccchHHHHHHHHhCCCC
Q 004366 204 SGAT-GPCGPCSEIYYDFHPDRGCSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERIARILQKVPN 282 (759)
Q Consensus 204 ~G~~-GpcGPcsEI~~d~g~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~~~~Lp~k~IDTGmGlERl~~vlqg~~s 282 (759)
-|| |--|===|+--| .+||=-. +=|.+ -.| .++..-.+.-=+||||||+.|||+.|
T Consensus 117 -sPTLGAwGlGWEVWld-----------------GMEITQF--TYFQQ-vGG--i~~~pv~~EITYGLERiaMylQ~vd~ 173 (293)
T TIGR00388 117 -NPTLGAWGLGWEVWLD-----------------GMEVTQF--TYFQQ-VGG--LECKPVSVEITYGLERLAMYIQGVEN 173 (293)
T ss_pred -CCcccccccccEEEEC-----------------Ceeeeee--eeeee-eCC--eeccccceeeehhHHHHHHHHhCCCe
Confidence 232 666655666654 2677532 22333 233 23444556778999999999999999
Q ss_pred cccc
Q 004366 283 NYET 286 (759)
Q Consensus 283 ~ydt 286 (759)
+||.
T Consensus 174 v~dl 177 (293)
T TIGR00388 174 VYDL 177 (293)
T ss_pred eeee
Confidence 9987
No 26
>PF01411 tRNA-synt_2c: tRNA synthetases class II (A); InterPro: IPR018164 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Alanyl-tRNA synthetase (6.1.1.7 from EC) is an alpha4 tetramer that belongs to class IIc. ; GO: 0000166 nucleotide binding, 0004813 alanine-tRNA ligase activity, 0005524 ATP binding, 0006419 alanyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3HY1_A 3HXZ_C 3HXY_A 3HXU_A 3HY0_B 3HXV_A 3HXX_A 3HXW_A 2E1B_A 2ZZG_B ....
Probab=94.64 E-value=0.0076 Score=70.91 Aligned_cols=91 Identities=21% Similarity=0.139 Sum_probs=69.4
Q ss_pred HHHHHHhcCCCCCceeccCCCCCccCCCCCCCCCCceEEEEecCCCCCCCCCCCCCCCceEEEeeeec---ccccccCCC
Q 004366 178 FEIWNKEVGVPVEHIKRMGADDNFWNSGATGPCGPCSEIYYDFHPDRGCSDVDLGDDTRFIEFYNLVF---MQYNKKDDG 254 (759)
Q Consensus 178 ~~iW~~~~g~~~~~I~~~~~~dNfW~~G~~GpcGPcsEI~~d~g~~~~~~~~~~~~~~r~lEiwNlVF---mq~~~~~~g 254 (759)
.+.-.+.+|||++||.- ....|. |.||+|-|.++ ...|.-+++| |+|....++
T Consensus 107 we~lt~~l~i~~~~l~v---t~~~~d----~ea~~~w~~~~-----------------g~~~~~i~~~~~~~nfw~~g~~ 162 (552)
T PF01411_consen 107 WEFLTEVLGIPPDRLYV---TVFEWD----GEAGEIWEKIV-----------------GGPEERILVFGKKDNFWEMGDT 162 (552)
T ss_dssp HHHHHCTTT--GGGEEE---EEECCE----CCCCCCCCECC-----------------TTECCCEEEE-CCEEEEESSTS
T ss_pred HHHHHhhcCCChHhEEE---EEeCCc----hhHHHHHHHhc-----------------CCCHHHeEecCCCCceEECCCC
Confidence 34556788999999974 344443 58999999775 2378889999 999975553
Q ss_pred ccccCccCcccccchHHHHHHHHhCCCCcccccccHHHHH
Q 004366 255 SLEPLKQKNIDTGLGLERIARILQKVPNNYETDLIFPIIK 294 (759)
Q Consensus 255 ~~~~Lp~k~IDTGmGlERl~~vlqg~~s~ydtd~F~~li~ 294 (759)
....|..-||+|+|+||..|..++.++.|+. .|..|.+
T Consensus 163 -gpcgpcseI~~d~G~e~~~~~~~~~~~~~~~-~~~eiwn 200 (552)
T PF01411_consen 163 -GPCGPCSEIFYDRGEERGCWDSQGTPTCDDD-RFLEIWN 200 (552)
T ss_dssp -EEEEEEEEEEEEEECCCHHHHHHSTSSHHHH-HECCCCC
T ss_pred -CCCCCCEEEEECCCcccCccccccccccccc-cHHHHHH
Confidence 6889999999999999999999999998875 5555443
No 27
>cd00733 GlyRS_alpha_core Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes and in arabidopsis. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. This alignment contains only sequences from the GlyRS form which heterotetramerizes. The homodimer form of GlyRS is in a different family of class II aaRS. Class II assignment is based upon structure and the presence of three characteristic sequence motifs.
Probab=94.55 E-value=0.45 Score=50.32 Aligned_cols=170 Identities=26% Similarity=0.352 Sum_probs=100.2
Q ss_pred hHHHHHHHHHHHhhCCCeeecCccCcCCCCccceecccccccccc-ccccCCCCCCCcccccCcccCCCc---cccCCCC
Q 004366 50 GDSIRKRFLDFYASRGHKVLPSASLVPEDPTVLLTIAGMLQFKPI-FLGKVPRQVPRAATSQRCIRTNDV---ENVGRTS 125 (759)
Q Consensus 50 ~~eiR~~Fl~fF~~~gH~~v~s~slvp~d~tllf~nAGm~~fk~~-f~g~~~p~~~r~~~~QkCiR~nDl---dnVG~t~ 125 (759)
-.+|-.+--+|..++|..++-++.+= +.| -.|-|. |+..-.|.--+++-+|+|.|-.|= +|=.+--
T Consensus 2 fQ~iI~~Lq~fW~~~GC~i~qPyD~E--------vGA--GT~hPaTflr~Lgpepw~vAYVqPsrRP~DGRYGeNPNRLq 71 (279)
T cd00733 2 FQDLILKLQKFWASQGCLIIQPYDME--------VGA--GTFHPATFLRALGPEPWNVAYVEPSRRPTDGRYGENPNRLQ 71 (279)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCcccc--------ccc--ccCCHHHHHHhcCCCcceeccccCCCCCCCCCcCCCchhhh
Confidence 35677788899999999999877653 233 366773 344444444468999999998662 2222222
Q ss_pred CcccccccccCCccCcccHHHHHHHHHHhhhcccCCCCCceEEEEeCChHHHHHHHHHhcCCCCCceeccCCCCCccCCC
Q 004366 126 RHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSG 205 (759)
Q Consensus 126 rH~TfFEMlGn~SfgdYfK~eai~~awefLt~~l~l~~~rl~vTv~~~D~e~~~iW~~~~g~~~~~I~~~~~~dNfW~~G 205 (759)
||.=|..+=-=|-.+ ..+.=.+-| +.+||||.. |=++| -+|| |+ -
T Consensus 72 -~y~QfQViiKPsP~n-----iQelYL~SL-~~lGid~~~-------------------------hDIRF-VEDn-WE-s 116 (279)
T cd00733 72 -HYYQFQVIIKPSPDN-----IQELYLESL-EALGINPKE-------------------------HDIRF-VEDN-WE-S 116 (279)
T ss_pred -hheeeEEEECCCCcc-----HHHHHHHHH-HHhCCCccc-------------------------cCeeE-eecC-CC-C
Confidence 444344443333333 011111111 246666653 23444 2454 65 2
Q ss_pred CC-CCCCCceEEEEecCCCCCCCCCCCCCCCceEEEeeeecccccccCCCccccCccCcccccchHHHHHHHHhCCCCcc
Q 004366 206 AT-GPCGPCSEIYYDFHPDRGCSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERIARILQKVPNNY 284 (759)
Q Consensus 206 ~~-GpcGPcsEI~~d~g~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~~~~Lp~k~IDTGmGlERl~~vlqg~~s~y 284 (759)
|| |--|===|+--| .+||=-. +=|.+ -.| .++..-.+.-=+||||||+.|||+.|+|
T Consensus 117 PTLGAwGLGWEVWld-----------------GMEITQF--TYFQQ-vGG--i~~~pv~~EiTYGLERiamylQ~vd~v~ 174 (279)
T cd00733 117 PTLGAWGLGWEVWLD-----------------GMEVTQF--TYFQQ-VGG--IPCKPISVEITYGLERIAMYLQGVDNVY 174 (279)
T ss_pred CcccccccccEEEEC-----------------Ceeeeee--eeeee-eCC--eeccccceeeehhHHHHHHHHhCCCcee
Confidence 33 666666676664 2777533 22332 333 3355566777899999999999999999
Q ss_pred cc
Q 004366 285 ET 286 (759)
Q Consensus 285 dt 286 (759)
|.
T Consensus 175 dl 176 (279)
T cd00733 175 DI 176 (279)
T ss_pred cc
Confidence 97
No 28
>PRK14908 glycyl-tRNA synthetase; Provisional
Probab=93.03 E-value=0.85 Score=56.96 Aligned_cols=174 Identities=24% Similarity=0.336 Sum_probs=107.1
Q ss_pred CCCChHHHHHHHHHHHhhCCCeeecCccCcCCCCccceecccccccccc-ccccCCCCCCCcccccCcccCCCc---ccc
Q 004366 46 FPSSGDSIRKRFLDFYASRGHKVLPSASLVPEDPTVLLTIAGMLQFKPI-FLGKVPRQVPRAATSQRCIRTNDV---ENV 121 (759)
Q Consensus 46 ~~~~~~eiR~~Fl~fF~~~gH~~v~s~slvp~d~tllf~nAGm~~fk~~-f~g~~~p~~~r~~~~QkCiR~nDl---dnV 121 (759)
.+||-.+|-.+--+|+.++|+.++.++.+= +.| -.|-|. |+..-.|.--+++-+|+|.|-.|= +|=
T Consensus 3 ~~~~~q~~i~~l~~~w~~~gc~~~qp~~~e--------~ga--gt~~p~t~~~~l~~~~~~~ayv~p~~rp~d~ryg~np 72 (1000)
T PRK14908 3 QPLTMQDMLLALLRYWSEQGCIIHQGYDLE--------VGA--GTFNPATFLRVLGPEPWRVAYVEPSRRPDDGRYGQNP 72 (1000)
T ss_pred CcccHHHHHHHHHHHHHHCCCEEECCcccc--------ccc--CcCCHHHHHhhcCCCCCcccccCCCCCCCCCCcCCCc
Confidence 358999999999999999999999877653 233 366673 344434444468999999999662 333
Q ss_pred CCCCCcccccccccCCccCcccHHHHHHHHHHhhhcccCCCCCceEEEEeCChHHHHHHHHHhcCCCCCceeccCCCCCc
Q 004366 122 GRTSRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNF 201 (759)
Q Consensus 122 G~t~rH~TfFEMlGn~SfgdYfK~eai~~awefLt~~l~l~~~rl~vTv~~~D~e~~~iW~~~~g~~~~~I~~~~~~dNf 201 (759)
.+- .||+=|..+=-=|-++- .+.=.+- .+.+|||+.. |=++| -+||
T Consensus 73 nrl-~~~~q~qvi~kp~p~~~-----q~~yl~s-l~~~gi~~~~-------------------------~dirf-ved~- 118 (1000)
T PRK14908 73 NRL-QTYTQFQVILKPVPGNP-----QELYLES-LKAIGIDLRD-------------------------HDIRF-VHDD- 118 (1000)
T ss_pred hhh-hhheeeEEEECCCCccH-----HHHHHHH-HHHcCCCccc-------------------------cceeE-eecC-
Confidence 332 35555555544444440 1110111 1246676653 22444 2455
Q ss_pred cCCCCC-CCCCCceEEEEecCCCCCCCCCCCCCCCceEEEeeeecccccccCCCccccCccCcccccchHHHHHHHHhCC
Q 004366 202 WNSGAT-GPCGPCSEIYYDFHPDRGCSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERIARILQKV 280 (759)
Q Consensus 202 W~~G~~-GpcGPcsEI~~d~g~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~~~~Lp~k~IDTGmGlERl~~vlqg~ 280 (759)
|+ -|| |--|===|+..| .+||=-.-| |. .-.| .++..-.+.-=+|||||++.|||+
T Consensus 119 we-~p~lga~glgwevw~~-----------------gmeitqfty--fq-q~gg--~~~~~~~~eitygler~~m~~q~~ 175 (1000)
T PRK14908 119 WE-NPTIGAWGLGWEVWLD-----------------GMEITQFTY--FQ-QAGG--KPLDPISGEITYGIERIAMYLQKV 175 (1000)
T ss_pred CC-CCcccccccccEEEEC-----------------Ceeeeeeee--eh-hcCC--eeccccceeeeccHHHHHHHHhCC
Confidence 54 232 666655666654 267753322 22 2333 345556677789999999999999
Q ss_pred CCcccc
Q 004366 281 PNNYET 286 (759)
Q Consensus 281 ~s~ydt 286 (759)
.++||.
T Consensus 176 ~~~~~~ 181 (1000)
T PRK14908 176 NHFKDI 181 (1000)
T ss_pred Ceeeee
Confidence 999986
No 29
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn).
Probab=89.73 E-value=2.8 Score=48.10 Aligned_cols=97 Identities=21% Similarity=0.296 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHhhCCCeeecCccCcCC--CCc-cceeccccccc-cccccccCCC---------CCCCcccccCcccCCC
Q 004366 51 DSIRKRFLDFYASRGHKVLPSASLVPE--DPT-VLLTIAGMLQF-KPIFLGKVPR---------QVPRAATSQRCIRTND 117 (759)
Q Consensus 51 ~eiR~~Fl~fF~~~gH~~v~s~slvp~--d~t-llf~nAGm~~f-k~~f~g~~~p---------~~~r~~~~QkCiR~nD 117 (759)
+.|-+.+-+||.++|...|..--|++. +.. -+|.- .-| ++.+|-+.+- ...|+-..-+|+|.-+
T Consensus 137 s~i~~~iR~ff~~~gf~EV~TP~L~~~~~eg~~~~f~v---~~~~~~~yL~~Spql~~q~li~~g~~rVf~i~~~FR~E~ 213 (428)
T TIGR00458 137 SGVLESVREFLAEEGFIEVHTPKLVASATEGGTELFPI---TYFEREAFLGQSPQLYKQQLMAAGFERVYEIGPIFRAEE 213 (428)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCceecCCCCCCcceeee---EecCCcEEECcCHHHHHHHHHhcccCcEEEEecccccCC
Confidence 345567778999999998864444431 111 01110 001 2333322111 2467888899999954
Q ss_pred ccccCCCCCcccccccccCC-ccCcccHHHHHHHHHHhhh
Q 004366 118 VENVGRTSRHHTFFEMLGNF-SFGDYFKKEAIQWAWEFST 156 (759)
Q Consensus 118 ldnVG~t~rH~TfFEMlGn~-SfgdYfK~eai~~awefLt 156 (759)
. + |.||.+=|-||--. +|.|| ++.++.+=+++.
T Consensus 214 ~---~-t~rHl~EFt~lE~e~a~~~~--~dlm~~~e~li~ 247 (428)
T TIGR00458 214 H---N-THRHLNEATSIDIEMAFEDH--HDVMDILEELVV 247 (428)
T ss_pred C---C-CccchheeeEeeeeeccCCH--HHHHHHHHHHHH
Confidence 3 3 57999999998654 77787 666666655543
No 30
>PRK09350 poxB regulator PoxA; Provisional
Probab=88.76 E-value=2 Score=47.08 Aligned_cols=108 Identities=15% Similarity=0.129 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHhhCCCeeecCccCcCCCCccceeccccccccc-cc-----------cccC---------CCCCCCcccc
Q 004366 51 DSIRKRFLDFYASRGHKVLPSASLVPEDPTVLLTIAGMLQFKP-IF-----------LGKV---------PRQVPRAATS 109 (759)
Q Consensus 51 ~eiR~~Fl~fF~~~gH~~v~s~slvp~d~tllf~nAGm~~fk~-~f-----------~g~~---------~p~~~r~~~~ 109 (759)
++|.+.+-+||.++|...|.+--+.+-+. .+|.+.+|+. |+ |-+. .....|+...
T Consensus 9 ~~i~~~ir~~f~~~gf~EV~TP~l~~~~~----~~~~~~~f~~~y~~~~~~~~~~~~L~~SPe~~~kr~la~~~~rvf~i 84 (306)
T PRK09350 9 AKIIAEIRRFFADRGVLEVETPILSQATV----TDIHLVPFETRFVGPGASQGKTLWLMTSPEYHMKRLLAAGSGPIFQI 84 (306)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEecccC----CCccCCceeeeeccccccCCcceEEecCHHHHHHHHhhccccceEEe
Confidence 57889999999999999885444433110 1233333432 22 1100 0123578888
Q ss_pred cCcccCCCccccCCCCCcccccccccCC-ccCcccHHHHHHHHHHhhhcccCCCCCceEEEE
Q 004366 110 QRCIRTNDVENVGRTSRHHTFFEMLGNF-SFGDYFKKEAIQWAWEFSTVEFGLPANRLWISV 170 (759)
Q Consensus 110 QkCiR~nDldnVG~t~rH~TfFEMlGn~-SfgdYfK~eai~~awefLt~~l~l~~~rl~vTv 170 (759)
.+|.|.... |.||.+=|.||=-. ++.|| ++.+...=+++...++..+-+ .+|+
T Consensus 85 ~~~FR~e~~-----~~~H~~EFt~lE~y~~~~d~--~dlm~~~E~li~~i~~~~~~~-~i~~ 138 (306)
T PRK09350 85 CKSFRNEEA-----GRYHNPEFTMLEWYRPHYDM--YRLMNEVDDLLQQVLDCEPAE-SLSY 138 (306)
T ss_pred cceeecCCC-----CCCCCcHHHhhhhhhhCCCH--HHHHHHHHHHHHHHHhcCCce-EEEH
Confidence 899999664 56999988887654 45565 677888878877776664432 3554
No 31
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=88.23 E-value=1 Score=48.52 Aligned_cols=97 Identities=20% Similarity=0.260 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHhhCCCeeecCccCcC--C-CCccceec-cccccc-cccccccC---------CCCCCCcccccCcccCC
Q 004366 51 DSIRKRFLDFYASRGHKVLPSASLVP--E-DPTVLLTI-AGMLQF-KPIFLGKV---------PRQVPRAATSQRCIRTN 116 (759)
Q Consensus 51 ~eiR~~Fl~fF~~~gH~~v~s~slvp--~-d~tllf~n-AGm~~f-k~~f~g~~---------~p~~~r~~~~QkCiR~n 116 (759)
++|-+.+-+||.++|...|..--+.+ . ...-.|.- .- .+ ++++|-.. .....|+-..-+|.|.-
T Consensus 5 s~i~~~ir~~f~~~gf~ev~tP~l~~~~~~~~~~~f~~~~~--~~g~~~~L~~Spql~~~~~~~~~~~~vf~i~~~fR~e 82 (269)
T cd00669 5 SKIIKAIRDFMDDRGFLEVETPMLQKITGGAGARPFLVKYN--ALGLDYYLRISPQLFKKRLMVGGLDRVFEINRNFRNE 82 (269)
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEeccCCccccceEEeeec--CCCCcEEeecCHHHHHHHHHhcCCCcEEEEecceeCC
Confidence 56888999999999999885444432 1 11112211 00 00 11222110 01245777888999983
Q ss_pred CccccCCCCCcccccccccCC-ccCcccHHHHHHHHHHhhh
Q 004366 117 DVENVGRTSRHHTFFEMLGNF-SFGDYFKKEAIQWAWEFST 156 (759)
Q Consensus 117 DldnVG~t~rH~TfFEMlGn~-SfgdYfK~eai~~awefLt 156 (759)
+.|.||+.=|-||--. +|.|| +|.+..+=+++.
T Consensus 83 -----~~~~~hl~EF~~le~e~~~~~~--~dvm~~~e~lv~ 116 (269)
T cd00669 83 -----DLRARHQPEFTMMDLEMAFADY--EDVIELTERLVR 116 (269)
T ss_pred -----CCCCCcccceeEEEEEEecCCH--HHHHHHHHHHHH
Confidence 3477999999998653 66665 455555544443
No 32
>PF02091 tRNA-synt_2e: Glycyl-tRNA synthetase alpha subunit; InterPro: IPR002310 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. In eubacteria, glycyl-tRNA synthetase (6.1.1.14 from EC) is an alpha2/beta2 tetramer composed of 2 different subunits [, , ]. In some eubacteria, in archaea and eukaryota, glycyl-tRNA synthetase is an alpha2 dimer (see IPR002315 from INTERPRO). It belongs to class IIc and is one of the most complex synthetases. What is most interesting is the lack of similarity between the two types: divergence at the sequence level is so great that it is impossible to infer descent from common genes. The alpha and beta subunits (see IPR002311 from INTERPRO) also lack significant sequence similarity. However, they are translated from a single mRNA [], and a single chain glycyl-tRNA synthetase from Chlamydia trachomatis has been found to have significant similarity with both domains, suggesting divergence from a single polypeptide chain []. This entry represents the alpha subunit of glycyl-tRNA synthetase.; GO: 0000166 nucleotide binding, 0004820 glycine-tRNA ligase activity, 0005524 ATP binding, 0006426 glycyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3RF1_A 3UFG_B 3RGL_B 1J5W_B.
Probab=88.15 E-value=0.88 Score=48.47 Aligned_cols=169 Identities=27% Similarity=0.356 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHhhCCCeeecCccCcCCCCccceecccccccccc-ccccCCCCCCCcccccCcccCCCc---cccCCCCC
Q 004366 51 DSIRKRFLDFYASRGHKVLPSASLVPEDPTVLLTIAGMLQFKPI-FLGKVPRQVPRAATSQRCIRTNDV---ENVGRTSR 126 (759)
Q Consensus 51 ~eiR~~Fl~fF~~~gH~~v~s~slvp~d~tllf~nAGm~~fk~~-f~g~~~p~~~r~~~~QkCiR~nDl---dnVG~t~r 126 (759)
.+|-.+--+|..++|..++.++.+= +.| -.|-|. |+..-.|..-+++-+|+|.|=.|= +|=-+=-+
T Consensus 2 Q~iI~~Lq~fW~~~GC~i~qPyD~e--------vGA--GT~~P~Tflr~Lgpepw~vaYVqPsrRP~DGRYGeNPNRLq~ 71 (284)
T PF02091_consen 2 QDIILTLQKFWADQGCIILQPYDIE--------VGA--GTFHPATFLRALGPEPWNVAYVQPSRRPTDGRYGENPNRLQH 71 (284)
T ss_dssp HHHHHHHHHHHHCTT-EE----SS----------SS--GGGSHHHHTTTSSSS-EEEEEEEEEE-GGG--TTTSSS--SE
T ss_pred HHHHHHHHHHHHHCCCEEECCcccc--------ccc--ccCCHHHHHHhcCCCCccccccccCCCCCCCccCCCchHhhh
Confidence 3566777889999999999887653 233 366673 344444555579999999998652 44444344
Q ss_pred cccccccccCCccCcccHHHHHHHHHHhhhcccCCCCCceEEEEeCChHHHHHHHHHhcCCCCCceeccCCCCCccCCCC
Q 004366 127 HHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGA 206 (759)
Q Consensus 127 H~TfFEMlGn~SfgdYfK~eai~~awefLt~~l~l~~~rl~vTv~~~D~e~~~iW~~~~g~~~~~I~~~~~~dNfW~~G~ 206 (759)
||- |..+=-=|-++ ..+.=.+-| +.+||++.. |=++| -+|| |+ -|
T Consensus 72 y~Q-fQVilKPsP~n-----iq~lYL~SL-~~lGId~~~-------------------------hDIRF-VEDn-WE-sP 116 (284)
T PF02091_consen 72 YYQ-FQVILKPSPDN-----IQELYLESL-EALGIDPKE-------------------------HDIRF-VEDN-WE-SP 116 (284)
T ss_dssp EEE-EEEEEES--TT-----HHHHHHHHH-HHCT--CCC-------------------------S-EEE-EEE--EE-ET
T ss_pred hhe-eEEEEcCCCcc-----HHHHHHHHH-HHhCCCccc-------------------------cceeE-eecC-CC-CC
Confidence 444 44433333332 011111111 246666653 23444 2455 64 22
Q ss_pred C-CCCCCceEEEEecCCCCCCCCCCCCCCCceEEEeeeecccccccCCCccccCccCcccccchHHHHHHHHhCCCCccc
Q 004366 207 T-GPCGPCSEIYYDFHPDRGCSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERIARILQKVPNNYE 285 (759)
Q Consensus 207 ~-GpcGPcsEI~~d~g~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~~~~Lp~k~IDTGmGlERl~~vlqg~~s~yd 285 (759)
| |--|===|+--| .+||=-.-+ |.+ -.| .++..-.+.-=+||||||+.|||+.++||
T Consensus 117 tLGAwGlGWEVWld-----------------GMEITQfTY--FQQ-vGG--i~~~pv~~EITYGLERiamylQ~vdnv~d 174 (284)
T PF02091_consen 117 TLGAWGLGWEVWLD-----------------GMEITQFTY--FQQ-VGG--IDCKPVSVEITYGLERIAMYLQGVDNVYD 174 (284)
T ss_dssp TTTEEEEEEEEEET-----------------TCEEEEEEE--EEE-ETT--EE-SS--EEEEEEHHHHHHHHCT-SSGGG
T ss_pred cccccccccEEEEC-----------------CEEEEEeee--eee-eCC--ccccccceehhhhHHHHHHHHhCCCeeEe
Confidence 2 555544566553 266653322 222 233 34556677888999999999999999999
Q ss_pred c
Q 004366 286 T 286 (759)
Q Consensus 286 t 286 (759)
.
T Consensus 175 l 175 (284)
T PF02091_consen 175 L 175 (284)
T ss_dssp S
T ss_pred e
Confidence 7
No 33
>COG0752 GlyQ Glycyl-tRNA synthetase, alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=86.73 E-value=7.8 Score=41.11 Aligned_cols=174 Identities=24% Similarity=0.303 Sum_probs=98.8
Q ss_pred CCCChHHHHHHHHHHHhhCCCeeecCccCcCCCCccceeccccccccccc-cccCCCCCCCcccccCcccCCCc---ccc
Q 004366 46 FPSSGDSIRKRFLDFYASRGHKVLPSASLVPEDPTVLLTIAGMLQFKPIF-LGKVPRQVPRAATSQRCIRTNDV---ENV 121 (759)
Q Consensus 46 ~~~~~~eiR~~Fl~fF~~~gH~~v~s~slvp~d~tllf~nAGm~~fk~~f-~g~~~p~~~r~~~~QkCiR~nDl---dnV 121 (759)
++||-..|--+-.+|..++|..++-++-+= +.| -.|-|+. |..--|.-=.++-+|+|-|-.|= +|-
T Consensus 3 ~~~~fQ~~IltLq~yW~~qGC~i~QpyD~e--------vGA--GT~hPaTfLralGpePw~aAYVqPSRRP~DGRYGenP 72 (298)
T COG0752 3 KKLTFQGLILTLQNYWAEQGCTILQPYDME--------VGA--GTFHPATFLRALGPEPWNAAYVQPSRRPTDGRYGENP 72 (298)
T ss_pred ccccHHHHHHHHHHHHHHcCCEEecccccc--------ccc--CcCChHHHHHhcCCCccceeeeccCCCCCCCCCCCCc
Confidence 468899999999999999999998776542 233 3688853 44333433358889999998662 222
Q ss_pred CCCCCcccccccccCCccCcccHHHHHHHHHHhhhcccCCCCCceEEEEeCChHHHHHHHHHhcCCCC-CceeccCCCCC
Q 004366 122 GRTSRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPANRLWISVYEDDDEAFEIWNKEVGVPV-EHIKRMGADDN 200 (759)
Q Consensus 122 G~t~rH~TfFEMlGn~SfgdYfK~eai~~awefLt~~l~l~~~rl~vTv~~~D~e~~~iW~~~~g~~~-~~I~~~~~~dN 200 (759)
.+=.+||-| .. .++=+|+++ .|-|=-=++.+||++ +|=+||= +||
T Consensus 73 NRlq~yyQf-QV------------------------ilKPsP~Ni--------QeLYL~SL~~lGid~~~HDIRFV-EDn 118 (298)
T COG0752 73 NRLQHYYQF-QV------------------------IIKPSPDNI--------QELYLGSLEALGIDPLEHDIRFV-EDN 118 (298)
T ss_pred hhhhhheeE-EE------------------------EecCCCccH--------HHHHHHHHHHcCCChhhcceeee-ccC
Confidence 222223332 11 122222221 000000011234322 2344552 444
Q ss_pred ccCCCCCCCCCCceEEEEecCCCCCCCCCCCCCCCceEEEeeeecccccccCCCccccCccCcccccchHHHHHHHHhCC
Q 004366 201 FWNSGATGPCGPCSEIYYDFHPDRGCSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERIARILQKV 280 (759)
Q Consensus 201 fW~~G~~GpcGPcsEI~~d~g~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~~~~Lp~k~IDTGmGlERl~~vlqg~ 280 (759)
|+-=.-|--|-==|+..| .+||=-. +=|.+ -.| +. +..-.+.--+||||||+.+||+
T Consensus 119 -WE~PTlGawGlGWEVWld-----------------GMEvTQF--TYFQQ-vGG-ie-c~pV~~EITYGlERlAmYiQ~v 175 (298)
T COG0752 119 -WENPTLGAWGLGWEVWLD-----------------GMEVTQF--TYFQQ-VGG-LE-CKPVSGEITYGLERLAMYIQGV 175 (298)
T ss_pred -CCCCcccccccceeEEEc-----------------Ceeeeee--ehhhh-hCC-ee-ccceeeeeehhHHHHHHHHhCc
Confidence 662223767766777764 2676432 22222 333 22 3334556679999999999999
Q ss_pred CCcccc
Q 004366 281 PNNYET 286 (759)
Q Consensus 281 ~s~ydt 286 (759)
.++||-
T Consensus 176 dnVydl 181 (298)
T COG0752 176 DNVYDL 181 (298)
T ss_pred cceeEE
Confidence 999986
No 34
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX. Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown.
Probab=85.03 E-value=5.1 Score=43.93 Aligned_cols=99 Identities=20% Similarity=0.291 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHhhCCCeeecCccCcCCCCccceeccccccc-----------cccccccCCC---------CCCCccccc
Q 004366 51 DSIRKRFLDFYASRGHKVLPSASLVPEDPTVLLTIAGMLQF-----------KPIFLGKVPR---------QVPRAATSQ 110 (759)
Q Consensus 51 ~eiR~~Fl~fF~~~gH~~v~s~slvp~d~tllf~nAGm~~f-----------k~~f~g~~~p---------~~~r~~~~Q 110 (759)
+.|-+.+-+||.++|...|.+--+.+.. -+.+|..+| ++.+|-..+. ...|+=..-
T Consensus 5 s~i~~~ir~~f~~~gF~EV~TP~l~~~~----~~e~~~~~F~~~y~~~~~~~~~~yL~~Spql~lk~ll~~g~~rVfeig 80 (304)
T TIGR00462 5 ARLLAAIRAFFAERGVLEVETPLLSPAP----VTDPHLDAFATEFLGPDGEGRPLYLQTSPEYAMKRLLAAGSGPIFQIC 80 (304)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEecCC----CCCcCCcceeeeccCCCCCCcceeeecCHHHHHHHHHhccCCCEEEEc
Confidence 4677888999999999988655554321 011222223 2333332211 357788888
Q ss_pred CcccCCCccccCCCCCcccccccccCC-ccCcccHHHHHHHHHHhhhcccC
Q 004366 111 RCIRTNDVENVGRTSRHHTFFEMLGNF-SFGDYFKKEAIQWAWEFSTVEFG 160 (759)
Q Consensus 111 kCiR~nDldnVG~t~rH~TfFEMlGn~-SfgdYfK~eai~~awefLt~~l~ 160 (759)
||+|+... +.||.+=|-||=-. +|.|| ++.++.+=+++..++.
T Consensus 81 p~FRaE~~-----~~rHl~EFtmLE~e~~~~d~--~d~m~~~e~li~~i~~ 124 (304)
T TIGR00462 81 KVFRNGER-----GRRHNPEFTMLEWYRPGFDY--HDLMDEVEALLQELLG 124 (304)
T ss_pred CceeCCCC-----CCCcccHHHhHHHHHHcCCH--HHHHHHHHHHHHHHHH
Confidence 99999664 36999999998443 45565 5566666666655543
No 35
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated
Probab=83.76 E-value=18 Score=41.91 Aligned_cols=99 Identities=17% Similarity=0.272 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHhhCCCeeecCccCcCC--CCcc-ceec-ccc-----ccc-cccccccCCC--------CCCCcccccCc
Q 004366 51 DSIRKRFLDFYASRGHKVLPSASLVPE--DPTV-LLTI-AGM-----LQF-KPIFLGKVPR--------QVPRAATSQRC 112 (759)
Q Consensus 51 ~eiR~~Fl~fF~~~gH~~v~s~slvp~--d~tl-lf~n-AGm-----~~f-k~~f~g~~~p--------~~~r~~~~QkC 112 (759)
+.|-+.+-+||.++|...|..--+.+. +... +|.- +-+ +.| ++++|-+.+- -..|+=..-+|
T Consensus 137 s~i~~~iR~f~~~~gf~EV~TP~L~~~~~eg~~~~F~v~~~~~~~~~~~~~~~~~L~~Spql~lq~l~~g~~rVf~i~~~ 216 (450)
T PRK03932 137 NTLAQAIHEFFNENGFVWVDTPIITASDCEGAGELFRVTTLDLDFSKDFFGKEAYLTVSGQLYAEAYAMALGKVYTFGPT 216 (450)
T ss_pred HHHHHHHHHHHHHCCCEEecCCceeccCCCCCCCceEeecccccccccccCCCcccccCHHHHHHHHHhccCCeEEeeec
Confidence 456677889999999998855444431 1111 1311 101 111 3334422111 25778888899
Q ss_pred ccCCCccccCCCCCcccccccccC-CccCcccHHHHHHHHHHhh
Q 004366 113 IRTNDVENVGRTSRHHTFFEMLGN-FSFGDYFKKEAIQWAWEFS 155 (759)
Q Consensus 113 iR~nDldnVG~t~rH~TfFEMlGn-~SfgdYfK~eai~~awefL 155 (759)
+|.-+. .|.||..=|-||-- .+|.|| +|.+..+=+++
T Consensus 217 FR~E~~----~t~rHl~EFt~lE~e~~~~~~--~~~m~~~e~li 254 (450)
T PRK03932 217 FRAENS----NTRRHLAEFWMIEPEMAFADL--EDNMDLAEEML 254 (450)
T ss_pred cccCCC----CCccccccccccceEEeccCH--HHHHHHHHHHH
Confidence 999543 36799988888876 367776 55555544443
No 36
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial. This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms.
Probab=83.49 E-value=7.8 Score=45.48 Aligned_cols=98 Identities=16% Similarity=0.237 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhhCCCeeecCccCcCC--CCcc-ceeccccccc-cccccccCCC---------CCCCcccccCcccCCCc
Q 004366 52 SIRKRFLDFYASRGHKVLPSASLVPE--DPTV-LLTIAGMLQF-KPIFLGKVPR---------QVPRAATSQRCIRTNDV 118 (759)
Q Consensus 52 eiR~~Fl~fF~~~gH~~v~s~slvp~--d~tl-lf~nAGm~~f-k~~f~g~~~p---------~~~r~~~~QkCiR~nDl 118 (759)
.|-+.+-+||.++|...|..--|.+. .... .|+.- .+.| ++.+|-..+- -..|+=..-+|+|.-++
T Consensus 177 ~i~~~iR~fl~~~gF~EVeTP~L~~~~gga~a~pF~t~-~~~~~~~~yLriSpELylKrlivgG~~rVfeIg~~FRnE~~ 255 (496)
T TIGR00499 177 KIIKAIRRFLDDRGFIEVETPMLQVIPGGANARPFITH-HNALDMDLYLRIAPELYLKRLIVGGFEKVYEIGRNFRNEGV 255 (496)
T ss_pred HHHHHHHHHHHHCcCEEEeCCeeecCCCCccceeEEee-cccCCCceEEecCHHHHHHHHHhCCCCceEEEecceecCCC
Confidence 45566778999999988855444331 1100 12100 0111 2333433211 24677778899999655
Q ss_pred cccCCCCCcccccccccC-CccCcc-----cHHHHHHHHHHhh
Q 004366 119 ENVGRTSRHHTFFEMLGN-FSFGDY-----FKKEAIQWAWEFS 155 (759)
Q Consensus 119 dnVG~t~rH~TfFEMlGn-~SfgdY-----fK~eai~~awefL 155 (759)
+.||..=|.||-- ++|.|| +-++-|..++.-+
T Consensus 256 -----~~rH~pEFTmlE~y~a~~d~~dlm~~~E~li~~i~~~l 293 (496)
T TIGR00499 256 -----DTTHNPEFTMIEFYQAYADYEDLMDLTENLFKFLAQEL 293 (496)
T ss_pred -----CCcccchhheeehhhhcCCHHHHHHHHHHHHHHHHHHH
Confidence 3499999999976 477787 2344455554444
No 37
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=82.22 E-value=1.6 Score=48.47 Aligned_cols=27 Identities=11% Similarity=0.167 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHhhCCCeeecCccCcC
Q 004366 50 GDSIRKRFLDFYASRGHKVLPSASLVP 76 (759)
Q Consensus 50 ~~eiR~~Fl~fF~~~gH~~v~s~slvp 76 (759)
..++++.--++|.+.|...+.+..|..
T Consensus 110 l~~~~~~Ir~if~~mGF~ev~gpeIes 136 (339)
T PRK00488 110 ITQTIEEIEDIFVGMGFEVAEGPEIET 136 (339)
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCcccc
Confidence 567777777788889999998776653
No 38
>PLN02502 lysyl-tRNA synthetase
Probab=72.62 E-value=19 Score=42.81 Aligned_cols=81 Identities=20% Similarity=0.238 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhhCCCeeecCccCcCCCCccceecccccccc--------ccccccCCC---------CCCCcccccCccc
Q 004366 52 SIRKRFLDFYASRGHKVLPSASLVPEDPTVLLTIAGMLQFK--------PIFLGKVPR---------QVPRAATSQRCIR 114 (759)
Q Consensus 52 eiR~~Fl~fF~~~gH~~v~s~slvp~d~tllf~nAGm~~fk--------~~f~g~~~p---------~~~r~~~~QkCiR 114 (759)
.|-+.+-+||.++|...|..=-+.+.. .+|+--+|+ +.+|-..+- -..|+-..-+|+|
T Consensus 234 ~i~~~iR~fl~~~gF~EVeTPiL~~~~-----gGA~a~pF~t~~n~~~~~~yL~~Spel~lK~L~v~g~~rVfeIg~~FR 308 (553)
T PLN02502 234 KIISYIRRFLDDRGFLEVETPMLNMIA-----GGAAARPFVTHHNDLNMDLYLRIATELHLKRLVVGGFERVYEIGRQFR 308 (553)
T ss_pred HHHHHHHHHHHHCCCEEEECCeeeccC-----CCccccceeeecccCCcceeeecCHHHHHHHHHHhccCCEEEEcCeee
Confidence 344667789999998877433232210 112222221 222222111 2467778889999
Q ss_pred CCCccccCCCCCcccccccccC-CccCcc
Q 004366 115 TNDVENVGRTSRHHTFFEMLGN-FSFGDY 142 (759)
Q Consensus 115 ~nDldnVG~t~rH~TfFEMlGn-~SfgdY 142 (759)
.-+++ .||..=|.||-- ++|.||
T Consensus 309 nE~~~-----~rH~pEFtmlE~y~a~~d~ 332 (553)
T PLN02502 309 NEGIS-----TRHNPEFTTCEFYQAYADY 332 (553)
T ss_pred CCCCC-----CccccceeehhhhhhcCCH
Confidence 95543 399999999987 588887
No 39
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=70.52 E-value=5.2 Score=47.43 Aligned_cols=79 Identities=13% Similarity=0.061 Sum_probs=52.3
Q ss_pred eccCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEcCHHHHHHhchhhhcCCCCCCcEEEEEECCccccccc
Q 004366 649 LVAFDRLRFDFNFHRPLLDTELEEIERLINGWIGDANLLQTKVMALDDAKRAGAIAMFGEKYGEQVKISSKMYVLWRFLV 728 (759)
Q Consensus 649 ~v~~d~~R~DF~~~~~lt~eel~~IE~~vNeiI~~~~pV~~~~~~~eEA~~~~~~~lf~eky~~~VRVV~Ig~~~~d~~~ 728 (759)
-.++..+++|...+..+|.+|..++ ..-| |.....++ .+ +|+..|. -+.+
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~-~~~~~~~~-----------------~~--~~~~~~~---~~~~ 79 (545)
T PRK14799 30 GLGERDFYIDVKSDTSITLDEVKKA-------INEN-VLANVSIE-----------------NN--QIVYKGN---KVSI 79 (545)
T ss_pred cccceeEEEecCCCccccHHHHHHH-------HhcC-cceeeEee-----------------cC--cEEEccC---ceee
Confidence 3567789999988777887754443 3332 33333222 01 2445664 5889
Q ss_pred cCC-ccc----ccCcEEEEeeecCC---CCceeeeec
Q 004366 729 CLW-NFV----VEPMLTILLKSEPS---KSFLSRVLH 757 (759)
Q Consensus 729 CgG-THV----eIG~IkIl~~~~~g---k~~~~~~~~ 757 (759)
|.| ||| .|+.||+++++..| .-+|.|||.
T Consensus 80 ~~~~ph~~~t~~~~~fkl~~~~~~g~~~~~~l~Riyg 116 (545)
T PRK14799 80 IEDKVSISTNLNPKYFEILNISTHHPNPNEQYVRIRG 116 (545)
T ss_pred cCCCCCCCCCCCcceEEEEEeccCCCccCceeEEEEE
Confidence 999 999 78899999987654 368899985
No 40
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=69.29 E-value=6.9 Score=44.84 Aligned_cols=76 Identities=17% Similarity=0.300 Sum_probs=55.3
Q ss_pred cccccchHHHHHHHHhCCCCcccccccHHHHHHHHHHhCCC-ccCCc---cccccceEEe----ehhhhhHHh---hhhC
Q 004366 263 NIDTGLGLERIARILQKVPNNYETDLIFPIIKKASELANVS-YAQSN---DRTNLNLKII----GDHLRAIVY---LLSD 331 (759)
Q Consensus 263 ~IDTGmGlERl~~vlqg~~s~ydtd~F~~li~~i~~~~~~~-y~~~~---~~~~~~~rvi----aDH~R~~~~---~i~D 331 (759)
.|+||-||=-+-++-.|..+.|-..+|+|+.+...+++.+. +...- .+..+.+.++ ||-+-+..| +|..
T Consensus 72 digtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~e~fdtElige 151 (636)
T KOG1501|consen 72 DIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVREDFDTELIGE 151 (636)
T ss_pred EccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhHhhhhhhhhcc
Confidence 58999999999999999999999999999999999887542 21100 0223355555 555544444 6889
Q ss_pred CCccCCC
Q 004366 332 GVFPSNI 338 (759)
Q Consensus 332 G~~Psn~ 338 (759)
|++||=+
T Consensus 152 Galps~q 158 (636)
T KOG1501|consen 152 GALPSLQ 158 (636)
T ss_pred ccchhHH
Confidence 9999843
No 41
>PTZ00450 macrophage migration inhibitory factor-like protein; Provisional
Probab=67.10 E-value=6 Score=37.26 Aligned_cols=24 Identities=29% Similarity=0.453 Sum_probs=20.4
Q ss_pred HHHHHhhhcccCCCCCceEEEEeC
Q 004366 149 QWAWEFSTVEFGLPANRLWISVYE 172 (759)
Q Consensus 149 ~~awefLt~~l~l~~~rl~vTv~~ 172 (759)
.---++|.++||||++|+|+.++.
T Consensus 79 ~~i~~~l~~~LgIp~dRiYI~f~d 102 (113)
T PTZ00450 79 PRITAAITKECGIPAERIYVFYYS 102 (113)
T ss_pred HHHHHHHHHHcCCCcccEEEEEEc
Confidence 445588999999999999999873
No 42
>KOG1637 consensus Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=64.01 E-value=2.8 Score=47.99 Aligned_cols=50 Identities=20% Similarity=0.404 Sum_probs=41.7
Q ss_pred HHhccHHHHHHHHHHhHhCCcceeeeeeccCCcEEEEEecCCCCCHHHHHHHHH
Q 004366 622 KVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLDTELEEIER 675 (759)
Q Consensus 622 mr~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~~R~DF~~~~~lt~eel~~IE~ 675 (759)
...||++|+|..|+.+.+|.+.. .|..+ ++++++|+ + ..++.+++..||.
T Consensus 68 vfwhssahvlg~a~e~~~g~~lc-~Gpp~-~~gf~yd~-~-~~i~~~d~~~~e~ 117 (560)
T KOG1637|consen 68 VFWHSSAHVLGEALEQEYGAHLC-IGPPI-EEGFYYDM-L-DEISSNDFPSIEA 117 (560)
T ss_pred eeeehhhhHhhHHHHHhcCeeEe-eCCCC-cCceehhh-h-ccccccccccccc
Confidence 36899999999999999998764 56654 67889999 5 6699999999987
No 43
>PF03002 Somatostatin: Somatostatin/Cortistatin family; InterPro: IPR018142 Somatostatin inhibits the release of the pituitary growth hormone, somatotropin and inhibits the release of glucagon and insulin from the pancreas of fasted animals. Cortistatin is a cortical neuropeptide with neuronal depressant and sleep-modulating properties [].; GO: 0005179 hormone activity, 0005576 extracellular region
Probab=62.25 E-value=3.7 Score=26.20 Aligned_cols=12 Identities=33% Similarity=0.658 Sum_probs=10.2
Q ss_pred ccccceeeeccC
Q 004366 9 LPCGHFLFKGAT 20 (759)
Q Consensus 9 ~~~~~~~~~~~~ 20 (759)
-+|+.||||+-|
T Consensus 5 ~~CknffWK~~t 16 (18)
T PF03002_consen 5 AGCKNFFWKTFT 16 (18)
T ss_pred ccccceeecccc
Confidence 489999999765
No 44
>PF01422 zf-NF-X1: NF-X1 type zinc finger; InterPro: IPR000967 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a domain presumed to be a zinc binding domain. The following pattern describes the zinc finger: C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C where X can be any amino acid, and numbers in brackets indicate the number of residues. The two position can be either His or Cys. This domain is found in the human transcriptional repressor NK-X1, a repressor of HLA-DRA transcription; the Drosophila shuttle craft protein, which plays an essential role during the late stages of embryonic neurogenesis; and a yeast hypothetical protein YNL023C. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=58.13 E-value=4.3 Score=26.79 Aligned_cols=9 Identities=56% Similarity=1.678 Sum_probs=7.5
Q ss_pred CCCCCCceE
Q 004366 207 TGPCGPCSE 215 (759)
Q Consensus 207 ~GpcGPcsE 215 (759)
.|||+||++
T Consensus 12 ~G~C~pC~~ 20 (20)
T PF01422_consen 12 PGPCPPCPQ 20 (20)
T ss_pred CCcCCCCCC
Confidence 499999974
No 45
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=57.55 E-value=20 Score=39.61 Aligned_cols=95 Identities=24% Similarity=0.396 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHhhCCCeeecCccCcCCCCccceeccccccc------cccccccCCC--------CCCCcccccCcccCC
Q 004366 51 DSIRKRFLDFYASRGHKVLPSASLVPEDPTVLLTIAGMLQF------KPIFLGKVPR--------QVPRAATSQRCIRTN 116 (759)
Q Consensus 51 ~eiR~~Fl~fF~~~gH~~v~s~slvp~d~tllf~nAGm~~f------k~~f~g~~~p--------~~~r~~~~QkCiR~n 116 (759)
+.|.+.+-+||.++|...|..-.+.+.+. .++..+| +|.+|-..+- ...|+-...+|+|..
T Consensus 28 s~i~~~ir~~f~~~gf~eV~TP~l~~~~~-----e~~~~~f~~~~~~~~~yL~~Spql~lk~l~~~~~~vf~i~~~FR~E 102 (322)
T cd00776 28 SEVLRAFREFLRENGFTEVHTPKITSTDT-----EGGAELFKVSYFGKPAYLAQSPQLYKEMLIAALERVYEIGPVFRAE 102 (322)
T ss_pred HHHHHHHHHHHHHCCCEEeeCCceecCCC-----CccCCccccccCCCcceecCCHHHHHHHHHHhhhhhEEeccccccC
Confidence 57788899999999999987666655211 1333444 3444432211 147788889999995
Q ss_pred CccccCCCCCcccccccccCC-ccC-cccHHHHHHHHHHhhh
Q 004366 117 DVENVGRTSRHHTFFEMLGNF-SFG-DYFKKEAIQWAWEFST 156 (759)
Q Consensus 117 DldnVG~t~rH~TfFEMlGn~-Sfg-dYfK~eai~~awefLt 156 (759)
+. .|.||+.=|-||.-. +|. || ++.++.+=++|.
T Consensus 103 ~~----~~~rHl~EFtmlE~e~~~~~~~--~dlm~~~e~ll~ 138 (322)
T cd00776 103 KS----NTRRHLSEFWMLEAEMAFIEDY--NEVMDLIEELIK 138 (322)
T ss_pred CC----CcCCCcceeeccceeeeccCCH--HHHHHHHHHHHH
Confidence 43 256999999998764 444 54 445555544443
No 46
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=56.48 E-value=12 Score=34.89 Aligned_cols=30 Identities=7% Similarity=0.090 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhhhcccCCCCCceEEEEeCC
Q 004366 144 KKEAIQWAWEFSTVEFGLPANRLWISVYED 173 (759)
Q Consensus 144 K~eai~~awefLt~~l~l~~~rl~vTv~~~ 173 (759)
|++-.+---++|.+.||+||+|+||.++.-
T Consensus 74 k~~l~~~i~~~l~~~lgi~~~rv~I~f~~~ 103 (116)
T PTZ00397 74 NSSIAAAITKILASHLKVKSERVYIEFKDC 103 (116)
T ss_pred HHHHHHHHHHHHHHHhCcCcccEEEEEEEC
Confidence 556666667889999999999999987643
No 47
>KOG1759 consensus Macrophage migration inhibitory factor [Defense mechanisms]
Probab=56.31 E-value=12 Score=35.41 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=21.6
Q ss_pred HHHHHhhhcccCCCCCceEEEEeCCh
Q 004366 149 QWAWEFSTVEFGLPANRLWISVYEDD 174 (759)
Q Consensus 149 ~~awefLt~~l~l~~~rl~vTv~~~D 174 (759)
.--.++|.++|+||++|+|+++|.-+
T Consensus 78 a~l~~il~~~L~l~~~rv~I~f~dl~ 103 (115)
T KOG1759|consen 78 AALTEILEKELSLDPDRVYIKFYDLN 103 (115)
T ss_pred HHHHHHHHHHhCCCCCeEEEEEecCC
Confidence 34458999999999999999998543
No 48
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=55.69 E-value=13 Score=41.49 Aligned_cols=23 Identities=9% Similarity=0.112 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHhhCCCeeecCc
Q 004366 50 GDSIRKRFLDFYASRGHKVLPSA 72 (759)
Q Consensus 50 ~~eiR~~Fl~fF~~~gH~~v~s~ 72 (759)
..++.+...++|.+.|.+.+...
T Consensus 113 l~~~~e~i~~iF~~mGF~~~~gp 135 (335)
T COG0016 113 LTQTIEEIEDIFLGMGFTEVEGP 135 (335)
T ss_pred HHHHHHHHHHHHHHcCceeccCC
Confidence 56788888889999999888755
No 49
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=52.73 E-value=52 Score=37.24 Aligned_cols=110 Identities=16% Similarity=0.141 Sum_probs=68.4
Q ss_pred CCCCChHHHHHHHHHHHhhCCCeeecCccCcCCCCccce------ecccccc----------cccccc-cc-------CC
Q 004366 45 DFPSSGDSIRKRFLDFYASRGHKVLPSASLVPEDPTVLL------TIAGMLQ----------FKPIFL-GK-------VP 100 (759)
Q Consensus 45 ~~~~~~~eiR~~Fl~fF~~~gH~~v~s~slvp~d~tllf------~nAGm~~----------fk~~f~-g~-------~~ 100 (759)
|.-+...+|++++.+-|+++|...|....+-+-| ++. +..-|.. +.|=++ .. ..
T Consensus 2 ~~~~~~~~i~~~i~~~f~~~Gy~~I~tP~lE~~e--~~~~~~g~~~~~~~~~f~D~~G~~l~LRpD~T~piaR~~~~~~~ 79 (373)
T PRK12295 2 MPLSASAAAAEALLASFEAAGAVRVDPPILQPAE--PFLDLSGEDIRRRIFVTSDENGEELCLRPDFTIPVCRRHIATAG 79 (373)
T ss_pred CcchhHHHHHHHHHHHHHHcCCEEeeCCccccHH--HhhhccCchhhcceEEEECCCCCEEeeCCCCcHHHHHHHHHcCC
Confidence 4456678999999999999999999655554411 111 1112333 333221 00 11
Q ss_pred CCCCCcccccCcccCCCccccCC-CCCcccccccccCCccCcccHHHHHHHHHHhhhcccCCC
Q 004366 101 RQVPRAATSQRCIRTNDVENVGR-TSRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLP 162 (759)
Q Consensus 101 p~~~r~~~~QkCiR~nDldnVG~-t~rH~TfFEMlGn~SfgdYfK~eai~~awefLt~~l~l~ 162 (759)
+...|+.-+++|.|.+ -|+ .--|..-||.+|.-+-- +--.|.|..|++.|. .+|++
T Consensus 80 ~~p~R~~Y~g~VfR~~----~gr~rEf~Q~GvEiiG~~~~~-~aDaEvi~l~~~~L~-~lgl~ 136 (373)
T PRK12295 80 GEPARYAYLGEVFRQR----RDRASEFLQAGIESFGRADPA-AADAEVLALALEALA-ALGPG 136 (373)
T ss_pred CCCeEEEEEccEEECC----CCCCCcceEeeEEeeCCCCCc-cchHHHHHHHHHHHH-HcCCC
Confidence 2223667778888875 343 34457889999965421 236899999999886 67876
No 50
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain. This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=49.41 E-value=24 Score=36.29 Aligned_cols=106 Identities=25% Similarity=0.385 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHhhCCCeeecCccCcCCCCccceeccc--------ccccc--------------c--------cccccCC
Q 004366 51 DSIRKRFLDFYASRGHKVLPSASLVPEDPTVLLTIAG--------MLQFK--------------P--------IFLGKVP 100 (759)
Q Consensus 51 ~eiR~~Fl~fF~~~gH~~v~s~slvp~d~tllf~nAG--------m~~fk--------------~--------~f~g~~~ 100 (759)
..|.+.+.+.|.+.|+..|..-.+.|-+ ++ ...| |..|. | ++.....
T Consensus 6 ~~l~~~~~~~~~~~G~~ei~~P~l~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LrP~~~~~i~~~~~~~~~ 82 (235)
T cd00670 6 RALERFLDDRMAEYGYQEILFPFLAPTV--LF-FKGGHLDGYRKEMYTFEDKGRELRDTDLVLRPAACEPIYQIFSGEIL 82 (235)
T ss_pred HHHHHHHHHHHHHcCCEEEECCeEcCHH--HH-hhcCCcccchhhcCeeccCcccccCCeEEEecCCCHHHHHHHhccCc
Confidence 4688889999999999988777776622 11 1111 22221 1 1111111
Q ss_pred C--C-CCCcccccCcccCCCccccCCCCCcccccccccCCccCc-----ccHHHHHHHHHHhhhcccCCC
Q 004366 101 R--Q-VPRAATSQRCIRTNDVENVGRTSRHHTFFEMLGNFSFGD-----YFKKEAIQWAWEFSTVEFGLP 162 (759)
Q Consensus 101 p--~-~~r~~~~QkCiR~nDldnVG~t~rH~TfFEMlGn~Sfgd-----YfK~eai~~awefLt~~l~l~ 162 (759)
+ + --|++...+|.|..--..-|. .|-+- |.|.|-..||+ ..-.|.+++++++|. .||++
T Consensus 83 ~~~~lP~r~~~~g~~fR~E~~~~~gl-~R~re-F~q~e~~~~~~~~~~~~~~~e~~~~~~~~l~-~lgl~ 149 (235)
T cd00670 83 SYRALPLRLDQIGPCFRHEPSGRRGL-MRVRE-FRQVEYVVFGEPEEAEEERREWLELAEEIAR-ELGLP 149 (235)
T ss_pred cchhcCeeeeeecccccCCCCCCCCC-hhhee-eeeceEEEEcCHHHHHHHHHHHHHHHHHHHH-HcCCc
Confidence 1 1 125778888999732222232 24344 89999999985 345678899999885 56874
No 51
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=47.17 E-value=32 Score=41.04 Aligned_cols=94 Identities=21% Similarity=0.344 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHhhCCCeeecCccCcCCCCccceeccccccc------cccccccCCC---------CCCCcccccCcccC
Q 004366 51 DSIRKRFLDFYASRGHKVLPSASLVPEDPTVLLTIAGMLQF------KPIFLGKVPR---------QVPRAATSQRCIRT 115 (759)
Q Consensus 51 ~eiR~~Fl~fF~~~gH~~v~s~slvp~d~tllf~nAGm~~f------k~~f~g~~~p---------~~~r~~~~QkCiR~ 115 (759)
+.|-+.|-+||.++|...|..-.|+... +..|...| ++++|-+.+- ...|+-...+|+|.
T Consensus 217 s~i~~~~R~fl~~~gFiEV~TP~L~~~~-----~egga~~F~v~yf~~~~~L~qSpql~kq~li~~g~~rVfeI~p~FRa 291 (550)
T PTZ00401 217 SRVCQYFRQFLIDSDFCEIHSPKIINAP-----SEGGANVFKLEYFNRFAYLAQSPQLYKQMVLQGDVPRVFEVGPVFRS 291 (550)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCccccCC-----CCccccccccccCCCCeecCCCHHHHHHHHHhcCCCCEEEEeCeEeC
Confidence 3667788899999999988654444311 11122223 3344433211 35778888899999
Q ss_pred CCccccCCCCCcccccccccC-CccC-cccHHHHHHHHHHhh
Q 004366 116 NDVENVGRTSRHHTFFEMLGN-FSFG-DYFKKEAIQWAWEFS 155 (759)
Q Consensus 116 nDldnVG~t~rH~TfFEMlGn-~Sfg-dYfK~eai~~awefL 155 (759)
-+ .+ |.||++=|.||=- .+|+ +|. |.++.+=+++
T Consensus 292 E~---s~-T~RHl~EFt~Le~E~~~~~~y~--evm~~~e~l~ 327 (550)
T PTZ00401 292 EN---SN-THRHLTEFVGLDVEMRINEHYY--EVLDLAESLF 327 (550)
T ss_pred CC---CC-CCCCccchhhhhhhhHhcCCHH--HHHHHHHHHH
Confidence 54 33 7899999999987 7886 452 4444444443
No 52
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit. Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit.
Probab=46.72 E-value=70 Score=35.01 Aligned_cols=107 Identities=21% Similarity=0.270 Sum_probs=67.5
Q ss_pred ChHHHHHHHHHHHhhCCCeeecCccCcCCCCccc-----eecccccccccccccc-------CCCC--------------
Q 004366 49 SGDSIRKRFLDFYASRGHKVLPSASLVPEDPTVL-----LTIAGMLQFKPIFLGK-------VPRQ-------------- 102 (759)
Q Consensus 49 ~~~eiR~~Fl~fF~~~gH~~v~s~slvp~d~tll-----f~nAGm~~fk~~f~g~-------~~p~-------------- 102 (759)
.-.+|++.+.+.|+++|...|.+-.+-|-+ ++ ..+..|..|..- .|. -++|
T Consensus 10 ~~~~i~~~l~~~~~~~Gy~~i~tP~le~~~--~~~~~~~~~~~~~~~~~d~-~g~~l~LRpD~T~~iaR~~~~~~~~~~~ 86 (314)
T TIGR00443 10 RKEEIERQLQDVFRSWGYQEIITPTLEYLD--TLSAGGGILNEDLFKLFDS-LGRVLGLRPDMTTPIARAVSTRLRDRPL 86 (314)
T ss_pred HHHHHHHHHHHHHHHcCCeeccCcchhhHH--HhcccCCcchhceEEEECC-CCCEEeecCcCcHHHHHHHHHhcccCCC
Confidence 357899999999999999999665444411 11 123345555331 011 0111
Q ss_pred CCCcccccCcccCCCccccCC-CCCcccccccccCCccCcccHHHHHHHHHHhhhcccCCC
Q 004366 103 VPRAATSQRCIRTNDVENVGR-TSRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLP 162 (759)
Q Consensus 103 ~~r~~~~QkCiR~nDldnVG~-t~rH~TfFEMlGn~SfgdYfK~eai~~awefLt~~l~l~ 162 (759)
..|.+-+.+|.|.+-- .-|+ -..+.+-||+.|.=|.- --.|.|.+|++.|. .+|+.
T Consensus 87 p~r~~y~g~VfR~~~~-~~gr~re~~Q~g~Eiig~~~~~--adaEvi~l~~~~l~-~lg~~ 143 (314)
T TIGR00443 87 PLRLCYAGNVFRTNES-GAGRSREFTQAGVELIGAGGPA--ADAEVIALLIEALK-ALGLK 143 (314)
T ss_pred CeEEEEeceEeecCCC-cCCCcccccccceEEeCCCCch--hHHHHHHHHHHHHH-HcCCC
Confidence 1256667778886442 2332 24557889999977662 34799999999987 47875
No 53
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B ....
Probab=46.15 E-value=11 Score=40.32 Aligned_cols=27 Identities=7% Similarity=0.178 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHhhCCCeeecCccCcC
Q 004366 50 GDSIRKRFLDFYASRGHKVLPSASLVP 76 (759)
Q Consensus 50 ~~eiR~~Fl~fF~~~gH~~v~s~slvp 76 (759)
..++++.-.++|.+.|...+..++|..
T Consensus 19 ~~~~~~~i~~~~~~~Gf~e~~~~~v~s 45 (247)
T PF01409_consen 19 ITKFIREIRDIFVGMGFQEVEGPEVES 45 (247)
T ss_dssp HHHHHHHHHHHHHCTTSEEESTTSEEE
T ss_pred HHHHHHHHHHHHHHCCCeEeeCCeEEe
Confidence 567888888899999999999877743
No 54
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=45.76 E-value=18 Score=42.32 Aligned_cols=58 Identities=26% Similarity=0.277 Sum_probs=36.4
Q ss_pred CceEEEEecCCCCCCCCCCCCCCCceEEEeeeecccccc-cCCCccccCccCcccccchHHHHHHHHhCCCC
Q 004366 212 PCSEIYYDFHPDRGCSDVDLGDDTRFIEFYNLVFMQYNK-KDDGSLEPLKQKNIDTGLGLERIARILQKVPN 282 (759)
Q Consensus 212 PcsEI~~d~g~~~~~~~~~~~~~~r~lEiwNlVFmq~~~-~~~g~~~~Lp~k~IDTGmGlERl~~vlqg~~s 282 (759)
|+.||+..+.. +.+||||.|.=..+=+- .+-| + |=+..++==||||||+|++.-|.+.
T Consensus 425 PS~Ev~v~~~~-----------~gkWIEIgg~Gm~rpevL~~~G-i-~~~~~~~A~GlGleRlaMi~ygi~D 483 (494)
T PTZ00326 425 PSMEIFGYHPG-----------LKKWVEVGNSGIFRPEMLRPMG-F-PEDVTVIAWGLSLERPTMIKYGIKN 483 (494)
T ss_pred CeeEEEEEecC-----------CCcEEEEeCcCccCHHHHHhcC-C-CCcceEEEEEecHHHHHHHHhCCcH
Confidence 57888875431 24699999875444111 1123 1 1122367779999999999988764
No 55
>PF01187 MIF: Macrophage migration inhibitory factor (MIF); InterPro: IPR001398 Macrophage migration inhibitory factor (MIF) is a key regulatory cytokine within innate and adaptive immune responses, capable of promoting and modulating the magnitude of the response []. MIF is released from T-cells and macrophages, and acts within the neuroendocrine system. MIF is capable of tautomerase activity, although its biological function has not been fully characterised. It is induced by glucocorticoid and is capable of overriding the anti-inflammatory actions of glucocorticoid []. MIF regulates cytokine secretion and the expression of receptors involved in the immune response. It can be taken up into target cells in order to interact with intracellular signalling molecules, inhibiting p53 function, and/or activating components of the mitogen-activated protein kinase and Jun-activation domain-binding protein-1 (Jab-1) []. MIF has been linked to various inflammatory diseases, such as rheumatoid arthritis and atherosclerosis []. The MIF homologue D-dopachrome tautomerase (4.1.1.84 from EC) is involved in detoxification through the conversion of dopaminechrome (and possibly norepinephrinechrome), the toxic quinine product of the neurotransmitter dopamine (and norepinephrine), to an indole derivative that can serve as a precursor to neuromelanin [, ].; PDB: 1UIZ_C 3FWT_A 1HFO_F 2WKB_D 3RF4_B 2OS5_A 3RF5_A 2XCZ_A 3FWU_A 3B64_A ....
Probab=41.90 E-value=22 Score=33.18 Aligned_cols=21 Identities=33% Similarity=0.662 Sum_probs=16.3
Q ss_pred HHHhhhcccCCCCCceEEEEe
Q 004366 151 AWEFSTVEFGLPANRLWISVY 171 (759)
Q Consensus 151 awefLt~~l~l~~~rl~vTv~ 171 (759)
--+||.+.||+|++|+|+.++
T Consensus 79 i~~~l~~~LgIp~~Riyi~f~ 99 (114)
T PF01187_consen 79 ITEFLEEELGIPPDRIYINFH 99 (114)
T ss_dssp HHHHHHHHHT--GGGEEEEEE
T ss_pred HHHHHHHHhCCCcCceEEEEE
Confidence 357899999999999999876
No 56
>PLN02850 aspartate-tRNA ligase
Probab=39.90 E-value=48 Score=39.37 Aligned_cols=83 Identities=19% Similarity=0.271 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHhhCCCeeecCccCcCC--CC-ccceeccccccc-cccccccCCC---------CCCCcccccCcccCCC
Q 004366 51 DSIRKRFLDFYASRGHKVLPSASLVPE--DP-TVLLTIAGMLQF-KPIFLGKVPR---------QVPRAATSQRCIRTND 117 (759)
Q Consensus 51 ~eiR~~Fl~fF~~~gH~~v~s~slvp~--d~-tllf~nAGm~~f-k~~f~g~~~p---------~~~r~~~~QkCiR~nD 117 (759)
+.|-+.|-+||.++|...|..--|++. ++ .-.|.- ..| ++++|-+.+- ...|+=..-+|+|+-+
T Consensus 229 s~i~~~~R~fl~~~gF~EV~TP~L~~~~~egga~~F~v---~yf~~~~~L~qSpql~kq~li~~g~~rVfeIgp~FRaE~ 305 (530)
T PLN02850 229 SQVCNLFREFLLSKGFVEIHTPKLIAGASEGGSAVFRL---DYKGQPACLAQSPQLHKQMAICGDFRRVFEIGPVFRAED 305 (530)
T ss_pred HHHHHHHHHHHHHCCcEEEeCCccccCCCccccceeee---ccCCcceecCCCHHHHHHHHHHhcCCceEEEecccccCC
Confidence 366778889999999988865444441 22 112221 011 4444433211 2567888889999954
Q ss_pred ccccCCCCCcccccccccCC-ccC
Q 004366 118 VENVGRTSRHHTFFEMLGNF-SFG 140 (759)
Q Consensus 118 ldnVG~t~rH~TfFEMlGn~-Sfg 140 (759)
. .|.||.+=|-||=-. +|+
T Consensus 306 s----~t~RHl~EFt~Le~Em~~~ 325 (530)
T PLN02850 306 S----FTHRHLCEFTGLDLEMEIK 325 (530)
T ss_pred C----CCCccchhhccchhhhhhh
Confidence 2 578999999999665 776
No 57
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=39.58 E-value=23 Score=35.88 Aligned_cols=33 Identities=33% Similarity=0.591 Sum_probs=30.0
Q ss_pred hhCCCccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 004366 329 LSDGVFPSNIGRGYVVRRLIRRAVRTGRLLGIKG 362 (759)
Q Consensus 329 i~DG~~Psn~grGYvlRrilRRa~r~~~~lg~~~ 362 (759)
|+=||.||-.|+|| ..-+||-|+..++.||++.
T Consensus 101 IGY~VrPseR~KGY-A~emLkl~L~~ar~lgi~~ 133 (174)
T COG3981 101 IGYSVRPSERRKGY-AKEMLKLALEKARELGIKK 133 (174)
T ss_pred ccceeChhhhccCH-HHHHHHHHHHHHHHcCCCe
Confidence 56788999999999 6899999999999999986
No 58
>smart00438 ZnF_NFX Repressor of transcription.
Probab=39.10 E-value=13 Score=26.15 Aligned_cols=11 Identities=45% Similarity=1.331 Sum_probs=8.7
Q ss_pred CCCCCCceEEE
Q 004366 207 TGPCGPCSEIY 217 (759)
Q Consensus 207 ~GpcGPcsEI~ 217 (759)
.|||+||.+..
T Consensus 12 ~G~C~pC~~~~ 22 (26)
T smart00438 12 PGPCPPCKQXX 22 (26)
T ss_pred CCcCcCccccc
Confidence 38999999644
No 59
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=38.83 E-value=17 Score=39.40 Aligned_cols=98 Identities=15% Similarity=0.185 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHhhCCCeeecCccCcC-CCCcc--ceeccccccccc-cccccC---------CCCCCCcccccCcccCCC
Q 004366 51 DSIRKRFLDFYASRGHKVLPSASLVP-EDPTV--LLTIAGMLQFKP-IFLGKV---------PRQVPRAATSQRCIRTND 117 (759)
Q Consensus 51 ~eiR~~Fl~fF~~~gH~~v~s~slvp-~d~tl--lf~nAGm~~fk~-~f~g~~---------~p~~~r~~~~QkCiR~nD 117 (759)
+.|-+.+-+||.++|...|.+=-|++ ..+.. ..+..=- ..+. +.|-+. .....|+-...+|.|..
T Consensus 5 s~i~~~iR~f~~~~gfiEV~TP~L~~~~~~g~~~f~~~~~~-~~~~~~~L~~Spql~lk~ll~~g~~~v~~i~~~fR~e- 82 (280)
T cd00777 5 SRVIKAIRNFLDEQGFVEIETPILTKSTPEGARDFLVPSRL-HPGKFYALPQSPQLFKQLLMVSGFDRYFQIARCFRDE- 82 (280)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeecCCCCCCCCceecccc-CCCceeecccCHHHHHHHHHhcCcCcEEEeccceeCC-
Confidence 46777888999999999885444433 21111 2221100 0011 112211 01346888889999993
Q ss_pred ccccCCCCCcccccccccCC-ccCcccHHHHHHHHHHhhh
Q 004366 118 VENVGRTSRHHTFFEMLGNF-SFGDYFKKEAIQWAWEFST 156 (759)
Q Consensus 118 ldnVG~t~rH~TfFEMlGn~-SfgdYfK~eai~~awefLt 156 (759)
+.+ ++||. =|.|++-- +|.|| ++.++..=+++.
T Consensus 83 --~~~-~~r~~-Ef~~~e~e~~~~~~--~dlm~~~e~li~ 116 (280)
T cd00777 83 --DLR-ADRQP-EFTQIDIEMSFVDQ--EDIMSLIEGLLK 116 (280)
T ss_pred --CCC-CCccc-eeEEeEeeeccCCH--HHHHHHHHHHHH
Confidence 344 56665 78888764 67775 445555554443
No 60
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain.
Probab=36.86 E-value=52 Score=34.86 Aligned_cols=111 Identities=14% Similarity=0.064 Sum_probs=66.4
Q ss_pred hHHHHHHHHHHHhhCCCeeecCccCcCCC---C---------ccceecc-c-ccccccccc-cc-------CC--CCCCC
Q 004366 50 GDSIRKRFLDFYASRGHKVLPSASLVPED---P---------TVLLTIA-G-MLQFKPIFL-GK-------VP--RQVPR 105 (759)
Q Consensus 50 ~~eiR~~Fl~fF~~~gH~~v~s~slvp~d---~---------tllf~nA-G-m~~fk~~f~-g~-------~~--p~~~r 105 (759)
-+.|++.+.+.|+++|...|....+.|-| . ..-|++- | ...+.|-++ .. .. +-..|
T Consensus 5 ~~~l~~~l~~~f~~~Gy~~v~tP~le~~~~~~~~~~~~~~~~~~~~~d~~g~~l~LRpd~T~~iaR~~a~~~~~~~~p~k 84 (261)
T cd00773 5 RRYIEDTLREVFERYGYEEIDTPVFEYTELFLRKSGDEVSKEMYRFKDKGGRDLALRPDLTAPVARAVAENLLSLPLPLK 84 (261)
T ss_pred HHHHHHHHHHHHHHcCCEEeeccceeeHHHhcccccccccceEEEEECCCCCEEEeCCCCcHHHHHHHHhcCccCCCCeE
Confidence 46799999999999999999777666622 0 0111111 1 222333221 00 00 11126
Q ss_pred cccccCcccCCCccccCCCCCcccccccccCCccCcccHHHHHHHHHHhhhcccCCCC
Q 004366 106 AATSQRCIRTNDVENVGRTSRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPA 163 (759)
Q Consensus 106 ~~~~QkCiR~nDldnVG~t~rH~TfFEMlGn~SfgdYfK~eai~~awefLt~~l~l~~ 163 (759)
+..+++|.|.+.-..-..-..+..-+|++|.-|.- --.|.|.++++.|. .+|++.
T Consensus 85 ~~y~g~vfR~e~~~~g~~re~~Q~g~Eiig~~~~~--~daE~i~l~~~~l~-~lg~~~ 139 (261)
T cd00773 85 LYYIGPVFRYERPQKGRYREFYQVGVEIIGSDSPL--ADAEVIALAVEILE-ALGLKD 139 (261)
T ss_pred EEEEcCEEecCCCCCCCccceEEeceeeeCCCChH--HHHHHHHHHHHHHH-HcCCCc
Confidence 78888999986543322223446778888885552 23789999999885 677654
No 61
>PF11867 DUF3387: Domain of unknown function (DUF3387); InterPro: IPR021810 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is typically between 255 to 340 amino acids in length. This domain is found associated with PF04851 from PFAM, PF04313 from PFAM.
Probab=34.97 E-value=3.5e+02 Score=30.01 Aligned_cols=197 Identities=14% Similarity=0.171 Sum_probs=107.1
Q ss_pred cCccCcccccchHHHHHHHHhCCCCcccc------cccHHHHHHHHHHhCCCccCCccccccceE---EeehhhhhHHhh
Q 004366 258 PLKQKNIDTGLGLERIARILQKVPNNYET------DLIFPIIKKASELANVSYAQSNDRTNLNLK---IIGDHLRAIVYL 328 (759)
Q Consensus 258 ~Lp~k~IDTGmGlERl~~vlqg~~s~ydt------d~F~~li~~i~~~~~~~y~~~~~~~~~~~r---viaDH~R~~~~~ 328 (759)
..+...+-++-+++|+..+.......+.. .-|......+.+....--+ +. ....+| ..-..+|+...-
T Consensus 33 ~~d~~~~~~~~~~~~l~~l~~a~~~il~~~~~~~r~~F~~~~~~l~~~~~l~~p-~~--~a~~~~~d~~~f~~ir~~i~k 109 (335)
T PF11867_consen 33 GFDYSKFFEASPFERLELLDDAVDHILSLEDEERRKRFLKLVKELSKAYALCLP-DP--EAEEYRDDIAFFQAIRAAIRK 109 (335)
T ss_pred CCChHHhcCCChHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHCC-CH--HHHHHHHHHHHHHHHHHHHHH
Confidence 34445566777899999888877766642 1344444444433221000 00 000111 112455666665
Q ss_pred hhCCCc-cCCCCCchHHHHHHHHHHHHHHH------hCCCCCCCCCccccchHHHHHHHHHHhcc-CChhhHHhHHHHHH
Q 004366 329 LSDGVF-PSNIGRGYVVRRLIRRAVRTGRL------LGIKGDGRGNLEGAFLPSIAEKAIELSTH-IDSDVKAREQRILE 400 (759)
Q Consensus 329 i~DG~~-Psn~grGYvlRrilRRa~r~~~~------lg~~~~~~~~~~~~~l~~lv~~v~~~m~~-~yPeL~~~~~~I~~ 400 (759)
+..+-- |+....+.-+|.||-.++..-.- .|.+.| =++-|-+...+.+.. -+|.++. +.|.+
T Consensus 110 ~~~~~~~~~~~~~~~~i~~Lid~~I~s~~v~~i~~~~~~~~~--------disild~eFl~~v~~~~~k~~~~--e~L~~ 179 (335)
T PF11867_consen 110 LYSDDDGPDIKEVEEKIRQLIDESIASEGVVDIFEAAGLKKP--------DISILDDEFLEEVKKMKSKNLKA--ELLEK 179 (335)
T ss_pred hccCCCCCCHHHHHHHHHHHHHHHHhcccchhHHhhcCCCCC--------ChhhcCHHHHHHHHhccCchHHH--HHHHH
Confidence 555444 88888889999999999975331 255544 233334444444433 3777764 66888
Q ss_pred HHHHHHHHHHHH-HH---HHHHHHHHHHHHHHhhhhcCCCCCCCChHHHHHHhhcCCCChhhHHHHHHH------cCCee
Q 004366 401 ELKREELRFVQT-LE---RGEKLLDQMLADALSRTRESGSVPRLSGQDAFLLYDTFGFPVEITKEVAEE------HGVSV 470 (759)
Q Consensus 401 ii~~EE~~F~~t-L~---~G~~~l~~~i~~~~~~~~~~g~~~~l~g~~af~LydTyGfP~dlt~~ia~e------~g~~v 470 (759)
.|+.+.+...+. .. +=.++|+++|+ +.++ +.++-++++.-. ++|.++|.++ .|++-
T Consensus 180 ~l~~~I~~~~~~N~~~~~~fsErLe~iI~----~Y~~----~~i~~~e~~~eL------i~la~el~~~~~r~~~~gLse 245 (335)
T PF11867_consen 180 LLRDEIKVRMKENPVRYKKFSERLEEIIE----KYNN----RSISSEEVIEEL------IKLAKELREEEERAEELGLSE 245 (335)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHH----HHHc----ccchHHHHHHHH------HHHHHHHHHHHhcccccCCCH
Confidence 888887765432 11 22335555555 5443 247777766432 2344555433 45555
Q ss_pred ChhhHHHHHHH
Q 004366 471 DMKGFDIEMEN 481 (759)
Q Consensus 471 d~~~F~~~~~~ 481 (759)
++-.|+.++.+
T Consensus 246 eE~AFyd~L~~ 256 (335)
T PF11867_consen 246 EELAFYDALAK 256 (335)
T ss_pred HHHHHHHHHHc
Confidence 44466666643
No 62
>cd00830 KAS_III Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems. It is found in bacteria and plants. Elongation of fatty acids in the type II systems occurs by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP. KASIII initiates this process by specifically using acetyl-CoA over acyl-CoA.
Probab=34.97 E-value=12 Score=40.42 Aligned_cols=77 Identities=19% Similarity=0.220 Sum_probs=51.5
Q ss_pred ccccccccCCccCcccHHHHHHHHHHhhhcccCCCCCce-EEEEeCChHHHHHHHHHhcCCCCCceeccCCCCCccCCCC
Q 004366 128 HTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPANRL-WISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGA 206 (759)
Q Consensus 128 ~TfFEMlGn~SfgdYfK~eai~~awefLt~~l~l~~~rl-~vTv~~~D~e~~~iW~~~~g~~~~~I~~~~~~dNfW~~G~ 206 (759)
-.+|.|.|...|-.+- +...+...++| +..|+.++.+ |+-.+.......+.+.+.+|+|++++.. | +..
T Consensus 207 ~~~~~~~~~~~~~~~~-~~~~~~i~~~l-~~~g~~~~di~~~~~h~~~~~~~~~~~~~lgl~~~~~~~-----~---~~~ 276 (320)
T cd00830 207 DPYLVMDGREVFKFAV-RLMPESIEEAL-EKAGLTPDDIDWFVPHQANLRIIEAVAKRLGLPEEKVVV-----N---LDR 276 (320)
T ss_pred CccEEEcChHHHHHHH-HhhHHHHHHHH-HHcCCCHHHCCEEEECCCCHHHHHHHHHHhCCCHHHhhh-----h---HHh
Confidence 3456677766553322 22222223344 4679998887 7767788888888899999999999842 2 345
Q ss_pred CCCCCCce
Q 004366 207 TGPCGPCS 214 (759)
Q Consensus 207 ~GpcGPcs 214 (759)
.|+||+|+
T Consensus 277 ~Gn~~sas 284 (320)
T cd00830 277 YGNTSAAS 284 (320)
T ss_pred hCcHHHHH
Confidence 68999887
No 63
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=33.87 E-value=1e+02 Score=34.95 Aligned_cols=107 Identities=21% Similarity=0.303 Sum_probs=66.9
Q ss_pred hHHHHHHHHHHHhhCCCeeecCccCcCCCCccc------eeccccccccccccccC-------C--------------CC
Q 004366 50 GDSIRKRFLDFYASRGHKVLPSASLVPEDPTVL------LTIAGMLQFKPIFLGKV-------P--------------RQ 102 (759)
Q Consensus 50 ~~eiR~~Fl~fF~~~gH~~v~s~slvp~d~tll------f~nAGm~~fk~~f~g~~-------~--------------p~ 102 (759)
-..|++++.+.|+++|...|....+-+-+ ++ .++.-|..|..-..|.. + +.
T Consensus 20 ~~~i~~~l~~~f~~~Gy~~i~tP~lE~~e--~~~~~~g~~~~~~~~~f~d~~~g~~l~LRpD~T~~iaR~~a~~~~~~~~ 97 (391)
T PRK12292 20 IEEIRRRLLDLFRRWGYEEVITPTLEYLD--TLLAGGGAILDLRTFKLVDQLSGRTLGLRPDMTAQIARIAATRLANRPG 97 (391)
T ss_pred HHHHHHHHHHHHHHcCCceeeCcchhhHH--HHhccCCccchhhhEEEeecCCCCEEEECCCCcHHHHHHHHHhccCCCC
Confidence 56899999999999999999554443311 11 11222444433211110 1 11
Q ss_pred CCCcccccCcccCCCccccCCC-CCcccccccccCCccCcccHHHHHHHHHHhhhcccCCC
Q 004366 103 VPRAATSQRCIRTNDVENVGRT-SRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLP 162 (759)
Q Consensus 103 ~~r~~~~QkCiR~nDldnVG~t-~rH~TfFEMlGn~SfgdYfK~eai~~awefLt~~l~l~ 162 (759)
.-|+.-+++|.|.+. ..-|+. --|..-||.+|.=|. +--.|.|.+|++.|. .+|++
T Consensus 98 p~r~~y~g~vfR~~~-~~~gr~ref~Q~g~EiiG~~~~--~aDaEvi~l~~~~l~-~lgl~ 154 (391)
T PRK12292 98 PLRLCYAGNVFRAQE-RGLGRSREFLQSGVELIGDAGL--EADAEVILLLLEALK-ALGLP 154 (391)
T ss_pred CeEEEeeceeeecCC-CcCCCccchhccceEEeCCCCc--hHHHHHHHHHHHHHH-HcCCC
Confidence 226777888888754 344444 345778999997665 345899999999986 67886
No 64
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=33.21 E-value=24 Score=39.02 Aligned_cols=28 Identities=36% Similarity=0.357 Sum_probs=24.5
Q ss_pred CcccccchHHHHHHHHhCCCCccccccc
Q 004366 262 KNIDTGLGLERIARILQKVPNNYETDLI 289 (759)
Q Consensus 262 k~IDTGmGlERl~~vlqg~~s~ydtd~F 289 (759)
++=-.|||+|||++++-|..+.=|+-+|
T Consensus 290 p~~G~giGidRL~m~~~g~~~Irdv~~F 317 (322)
T cd00776 290 PHGGFGLGLERLVMWLLGLDNIREAILF 317 (322)
T ss_pred CCceeeEhHHHHHHHHcCCCchheEeec
Confidence 6778899999999999999998777555
No 65
>KOG2783 consensus Phenylalanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=31.79 E-value=25 Score=39.79 Aligned_cols=33 Identities=30% Similarity=0.500 Sum_probs=22.8
Q ss_pred CcccccchHHHHHHHHhCCCCcccccccHHHHHHHH
Q 004366 262 KNIDTGLGLERIARILQKVPNNYETDLIFPIIKKAS 297 (759)
Q Consensus 262 k~IDTGmGlERl~~vlqg~~s~ydtd~F~~li~~i~ 297 (759)
--.=-||||||||++|=+-|. .-+|...=+..-
T Consensus 295 igwafglgLerLAMll~~IpD---iRlfWs~DeRFl 327 (436)
T KOG2783|consen 295 IGWAFGLGLERLAMLLFDIPD---IRLFWSFDERFL 327 (436)
T ss_pred eeeeeeccHHHHHHHHhcCcc---hheeeccchHHH
Confidence 344569999999999988773 356655444433
No 66
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=30.66 E-value=47 Score=39.00 Aligned_cols=24 Identities=17% Similarity=0.411 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHhhCCCeeecCcc
Q 004366 50 GDSIRKRFLDFYASRGHKVLPSAS 73 (759)
Q Consensus 50 ~~eiR~~Fl~fF~~~gH~~v~s~s 73 (759)
..++|+.+-++|.+.|.+.++..|
T Consensus 223 l~~~~~ei~~if~~mGF~e~~~g~ 246 (492)
T PLN02853 223 LLKVRQQFRKIFLQMGFEEMPTNN 246 (492)
T ss_pred HHHHHHHHHHHHHhCCCEEecCCC
Confidence 679999999999999999996443
No 67
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B ....
Probab=30.17 E-value=30 Score=38.20 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=0.0
Q ss_pred cchHHHHHHHHhCCCCccccccc
Q 004366 267 GLGLERIARILQKVPNNYETDLI 289 (759)
Q Consensus 267 GmGlERl~~vlqg~~s~ydtd~F 289 (759)
|+|+|||++++-|.++.=|+-+|
T Consensus 308 glG~eRLvm~l~g~~~Irdv~~F 330 (335)
T PF00152_consen 308 GLGLERLVMLLLGLKNIRDVIPF 330 (335)
T ss_dssp EEEHHHHHHHHHT-SSGGGGSSS
T ss_pred eehHHHHHHHHcCCCcHHheecC
No 68
>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis]
Probab=29.86 E-value=57 Score=37.00 Aligned_cols=131 Identities=20% Similarity=0.234 Sum_probs=66.7
Q ss_pred CccCcccHHHHHHHHHHhhhcccCCCCCceE----EEEeCChHHHHHHHHHhcCCCCCceeccCCCCCccCCCCCCCCCC
Q 004366 137 FSFGDYFKKEAIQWAWEFSTVEFGLPANRLW----ISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGATGPCGP 212 (759)
Q Consensus 137 ~SfgdYfK~eai~~awefLt~~l~l~~~rl~----vTv~~~D~e~~~iW~~~~g~~~~~I~~~~~~dNfW~~G~~GpcGP 212 (759)
||+---|.+|--+=|-.++|-. +..-.. |||=.|---|-.+.. ++|+..=+-.+=..+..|+-- |-
T Consensus 211 FSIDRCFRREQ~ED~shLmtYh---SASCVvvde~vtvD~GKaVAEglL~-qfGFe~F~FrpDEK~SKYYvP------~T 280 (536)
T COG2024 211 FSIDRCFRREQREDASHLMTYH---SASCVVVDEDVTVDDGKAVAEGLLR-QFGFEKFRFRPDEKKSKYYVP------GT 280 (536)
T ss_pred eehhHHhhhhhhcchhhhhhhc---cceEEEEcCcccccccHHHHHHHHH-HhCccceeeccccccccccCC------Cc
Confidence 6666667776655555544411 111100 111111122333444 567655444332233445522 45
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCceEEEeeeecccccccCCCccccCccCcccccchHHHHHHHHhCCCCc
Q 004366 213 CSEIYYDFHPDRGCSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERIARILQKVPNN 283 (759)
Q Consensus 213 csEI~~d~g~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~~~~Lp~k~IDTGmGlERl~~vlqg~~s~ 283 (759)
-||+|--+. +...+. ..-++.|+||.+ |-=|.-.+=-.| -+|.++.--|.|.||||+||.|.+.+
T Consensus 281 QTEVyAyHP-kL~gs~--~kysdgWiEiAT--FGlYSP~ALaeY-~Id~pVMNLGlGVERlaMIl~g~~DV 345 (536)
T COG2024 281 QTEVYAYHP-KLVGSI--EKYSDGWIEIAT--FGLYSPIALAEY-GIDYPVMNLGLGVERLAMILHGADDV 345 (536)
T ss_pred cceEEEecc-cccccc--cccCCCcEEEEe--ecccChHHHHHc-CCCCceeecchhHHHHHHHHhCchHH
Confidence 799885432 221111 134578999995 323322111111 25667777899999999999987643
No 69
>PF02092 tRNA_synt_2f: Glycyl-tRNA synthetase beta subunit; InterPro: IPR015944 The aminoacyl-tRNA synthetases (6.1.1 from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold and are mostly monomeric, while class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet formation, flanked by alpha-helices [], and are mostly dimeric or multimeric. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic aci, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. The 10 class I synthetases are considered to have in common the catalytic domain structure based on the Rossmann fold, which is totally different from the class II catalytic domain structure. The class I synthetases are further divided into three subclasses, a, b and c, according to sequence homology. No conserved structural features for tRNA recognition by class I synthetases have been established. Class-II tRNA synthetases do not share a high degree of similarity, however at least three conserved regions are present [, , ]. In most eubacteria, glycyl-tRNA synthetase (6.1.1.14 from EC) is an alpha2/beta2 tetramer composed of 2 different subunits [, , ] while in archaea, eukaryota and some eubacteria, glycyl-tRNA synthetase is an alpha2 dimer (see IPR002315 from INTERPRO). This entry represents the beta subunit of the tetrameric enzyme. What is most interesting is the lack of similarity between the two types: divergence at the sequence level is so great that it is impossible to infer descent from common genes. The alpha (see IPR002310 from INTERPRO) and beta subunits also lack significant sequence similarity. However, they are translated from a single mRNA [], and a single chain glycyl-tRNA synthetase from Chlamydia trachomatis has been found to have significant similarity with both domains, suggesting divergence from a single polypeptide chain []. This entry represents the beta subunit of glycyl-tRNA synthetase.; GO: 0000166 nucleotide binding, 0004820 glycine-tRNA ligase activity, 0005524 ATP binding, 0006426 glycyl-tRNA aminoacylation, 0005737 cytoplasm
Probab=29.27 E-value=3e+02 Score=33.04 Aligned_cols=64 Identities=25% Similarity=0.305 Sum_probs=53.8
Q ss_pred ceEEeehhhhhHHhhhhCCCccCCCCCchHHHHHHHHHHHHHHHhCCCCCCCCCccccchHHHHHHHHHHhcc
Q 004366 314 NLKIIGDHLRAIVYLLSDGVFPSNIGRGYVVRRLIRRAVRTGRLLGIKGDGRGNLEGAFLPSIAEKAIELSTH 386 (759)
Q Consensus 314 ~~rviaDH~R~~~~~i~DG~~Psn~grGYvlRrilRRa~r~~~~lg~~~~~~~~~~~~~l~~lv~~v~~~m~~ 386 (759)
++=.|||-+-+++=+.+=|..|+...--|=|||-.-=.+|.....+++-+ |.+|+...++.+..
T Consensus 445 ~ilsiADKlDtl~g~F~ig~~PtGskDPfaLRRaa~GIirIi~e~~~~l~---------L~~li~~a~~~~~~ 508 (548)
T PF02092_consen 445 AILSIADKLDTLVGFFGIGEIPTGSKDPFALRRAALGIIRIIIEKKLDLD---------LKELIEKALELYPK 508 (548)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCC---------HHHHHHHHHHHhhh
Confidence 55678999999998889999999999999999987777777777777776 88888888887654
No 70
>PLN02850 aspartate-tRNA ligase
Probab=28.24 E-value=30 Score=41.04 Aligned_cols=29 Identities=28% Similarity=0.342 Sum_probs=25.2
Q ss_pred CcccccchHHHHHHHHhCCCCcccccccH
Q 004366 262 KNIDTGLGLERIARILQKVPNNYETDLIF 290 (759)
Q Consensus 262 k~IDTGmGlERl~~vlqg~~s~ydtd~F~ 290 (759)
+|=-.|+|||||++++-|.++.=|+-+|.
T Consensus 494 PhgG~GiGlERLvM~l~g~~nIr~v~~FP 522 (530)
T PLN02850 494 PHGGFGVGLERVVMLFCGLNNIRKTSLFP 522 (530)
T ss_pred CCceEEEcHHHHHHHHcCCCchheEeecC
Confidence 56678999999999999999998887764
No 71
>TIGR00457 asnS asparaginyl-tRNA synthetase. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn.
Probab=28.15 E-value=31 Score=40.02 Aligned_cols=29 Identities=21% Similarity=0.244 Sum_probs=24.6
Q ss_pred CcccccchHHHHHHHHhCCCCcccccccH
Q 004366 262 KNIDTGLGLERIARILQKVPNNYETDLIF 290 (759)
Q Consensus 262 k~IDTGmGlERl~~vlqg~~s~ydtd~F~ 290 (759)
++=--|||+|||++.+-|.++.=|+-+|.
T Consensus 417 PhgG~GiGieRlvm~l~g~~~Irdv~~FP 445 (453)
T TIGR00457 417 PHSGFGLGFERLLAYITGLENIRDAIPFP 445 (453)
T ss_pred CCCcEeehHHHHHHHHhCCCcHhhhccCc
Confidence 56667999999999999999988876664
No 72
>PRK12420 histidyl-tRNA synthetase; Provisional
Probab=28.13 E-value=2.1e+02 Score=32.79 Aligned_cols=105 Identities=15% Similarity=0.235 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHHhhCCCeeecCccCcCCCCccceec--------ccccccccccccc-------CCCC------------
Q 004366 50 GDSIRKRFLDFYASRGHKVLPSASLVPEDPTVLLTI--------AGMLQFKPIFLGK-------VPRQ------------ 102 (759)
Q Consensus 50 ~~eiR~~Fl~fF~~~gH~~v~s~slvp~d~tllf~n--------AGm~~fk~~f~g~-------~~p~------------ 102 (759)
-..|++++.+.|+++|...|....+-|-| ++... -.|..|.+- .|. .++|
T Consensus 21 ~~~i~~~l~~~f~~~Gy~~i~tP~lE~~~--~~~~~~~~~~~~~~~~~~~~D~-~g~~l~LRpD~T~~iaR~va~~~~~~ 97 (423)
T PRK12420 21 RNKIKRALEDVFERYGCKPLETPTLNMYE--LMSSKYGGGDEILKEIYTLTDQ-GKRDLALRYDLTIPFAKVVAMNPNIR 97 (423)
T ss_pred HHHHHHHHHHHHHHcCCEeccccccchHH--HHhcccCCCcccccceEEEecC-CCceecccccccHHHHHHHHhCcCCC
Confidence 57899999999999999999665555522 22211 114444431 121 0111
Q ss_pred CC-CcccccCcccCCCccccCCCC-CcccccccccCCccCcccHHHHHHHHHHhhhcccCC
Q 004366 103 VP-RAATSQRCIRTNDVENVGRTS-RHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGL 161 (759)
Q Consensus 103 ~~-r~~~~QkCiR~nDldnVG~t~-rH~TfFEMlGn~SfgdYfK~eai~~awefLt~~l~l 161 (759)
.+ |+..+.+|.|..-. .-|+.. .+..-||+.|.=|. .--.|.|..|++.|. .||+
T Consensus 98 ~p~r~~y~g~vfR~~~~-~~gr~rE~~Q~g~EiiG~~~~--~adaEvi~la~~~l~-~lg~ 154 (423)
T PRK12420 98 LPFKRYEIGKVFRDGPI-KQGRFREFIQCDVDIVGVESV--MAEAELMSMAFELFR-RLNL 154 (423)
T ss_pred CCeeEEEEcceECCCCC-CCCccceeEECCeeeECCCCC--cccHHHHHHHHHHHH-HCCC
Confidence 12 55667778886332 334443 34677899996554 335899999999986 6787
No 73
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=27.83 E-value=31 Score=38.25 Aligned_cols=99 Identities=16% Similarity=0.230 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHhhCCCeeecCccCcC-CCCc--cceeccccccccccccccCCC---------CCCCcccccCcccCCCc
Q 004366 51 DSIRKRFLDFYASRGHKVLPSASLVP-EDPT--VLLTIAGMLQFKPIFLGKVPR---------QVPRAATSQRCIRTNDV 118 (759)
Q Consensus 51 ~eiR~~Fl~fF~~~gH~~v~s~slvp-~d~t--llf~nAGm~~fk~~f~g~~~p---------~~~r~~~~QkCiR~nDl 118 (759)
++|-+.+-+||.++|..-|..--+++ ..+. -.|..-.-..-++.+|-+.+. ...|+=...+|+|.-+.
T Consensus 12 s~i~~~iR~ff~~~gf~EV~TP~L~~~~~~~~~~~f~~~~~~~~~~~yL~~Spql~~k~ll~~g~~~vf~i~~~FR~E~~ 91 (329)
T cd00775 12 SKIISYIRKFLDDRGFLEVETPMLQPIAGGAAARPFITHHNALDMDLYLRIAPELYLKRLIVGGFERVYEIGRNFRNEGI 91 (329)
T ss_pred HHHHHHHHHHHHHCCCEEEECCccccCCCCccceeEEeccCCCCcceeeccCHHHHHHHHHhcCCCcEEEEeccccCCCC
Confidence 46778888999999999885554544 2221 012110001113333322111 25678888999998654
Q ss_pred cccCCCCCcccccccccC-CccCcccHHHHHHHHHHhhh
Q 004366 119 ENVGRTSRHHTFFEMLGN-FSFGDYFKKEAIQWAWEFST 156 (759)
Q Consensus 119 dnVG~t~rH~TfFEMlGn-~SfgdYfK~eai~~awefLt 156 (759)
+.||++=|-||=- .+|.+| +|.+..+=+++.
T Consensus 92 -----~~rHl~EFt~le~e~~~~~~--~~~m~~~e~li~ 123 (329)
T cd00775 92 -----DLTHNPEFTMIEFYEAYADY--NDMMDLTEDLFS 123 (329)
T ss_pred -----CCCCCCceEEEEEeeecCCH--HHHHHHHHHHHH
Confidence 3599999999854 466665 455555555544
No 74
>PRK06462 asparagine synthetase A; Reviewed
Probab=26.92 E-value=35 Score=38.03 Aligned_cols=101 Identities=20% Similarity=0.177 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHhhCCCeeecCccCcCC-CCccce-eccccccc------cccccccCCC--------CCCCcccccCccc
Q 004366 51 DSIRKRFLDFYASRGHKVLPSASLVPE-DPTVLL-TIAGMLQF------KPIFLGKVPR--------QVPRAATSQRCIR 114 (759)
Q Consensus 51 ~eiR~~Fl~fF~~~gH~~v~s~slvp~-d~tllf-~nAGm~~f------k~~f~g~~~p--------~~~r~~~~QkCiR 114 (759)
++|-+.+-+||.++|...|..==+.+. ++-+-- .+-|...| ++++|-..+- ...|+=...+|.|
T Consensus 34 s~i~~~iR~ff~~~~f~EV~TP~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~yL~~Spql~k~ll~~g~~rVfeI~p~FR 113 (335)
T PRK06462 34 SSILRYTREFLDGRGFVEVLPPIISPSTDPLMGLGSDLPVKQISIDFYGVEYYLADSMILHKQLALRMLGKIFYLSPNFR 113 (335)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeEecCCCCCCCccccCCccccccccCCCceeeccCHHHHHHHHHhhcCcEEEEecccc
Confidence 466677889999999887733222221 220000 00001111 2222221110 2467888899999
Q ss_pred CCCccccCCCCCcccccccccCC-ccCcccHHHHHHHHHHhh
Q 004366 115 TNDVENVGRTSRHHTFFEMLGNF-SFGDYFKKEAIQWAWEFS 155 (759)
Q Consensus 115 ~nDldnVG~t~rH~TfFEMlGn~-SfgdYfK~eai~~awefL 155 (759)
.-+.+.- ++||..=|-||--. .|.|| ++.++.+=+++
T Consensus 114 ~E~~~~~--~~rHl~EFtmlE~e~~~~d~--~dlm~~~e~lv 151 (335)
T PRK06462 114 LEPVDKD--TGRHLYEFTQLDIEIEGADL--DEVMDLIEDLI 151 (335)
T ss_pred CCCCCCC--CCCCCCchheeeehhhcCCH--HHHHHHHHHHH
Confidence 9554322 27999999998665 45454 44444444444
No 75
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed
Probab=26.79 E-value=1.7e+02 Score=33.83 Aligned_cols=170 Identities=19% Similarity=0.297 Sum_probs=98.1
Q ss_pred hHHHHHHHHHHHhhCCCeeecCccCcCCC---C----------ccceecccccccccccc-cc---------CCCCCCCc
Q 004366 50 GDSIRKRFLDFYASRGHKVLPSASLVPED---P----------TVLLTIAGMLQFKPIFL-GK---------VPRQVPRA 106 (759)
Q Consensus 50 ~~eiR~~Fl~fF~~~gH~~v~s~slvp~d---~----------tllf~nAGm~~fk~~f~-g~---------~~p~~~r~ 106 (759)
...|.+...+||..+|...|-...|++.+ . ..+|....-..++|..+ +. ..+.--|+
T Consensus 206 ~s~Le~aIR~~f~~~GF~EV~TPtLt~ee~~e~~g~~~g~~i~~~my~ideel~LRpsLtPsLlr~la~n~k~~~~P~RI 285 (417)
T PRK09537 206 LGKLERDITKFFVDRGFLEIKSPILIPAEYIERMGIDNDTELSKQIFRVDKNFCLRPMLAPGLYNYLRKLDRILPDPIKI 285 (417)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCeeecHHHHHHhCCCCcccchhhheeeCCceEehhhhHHHHHHHHHhhhhcccCCeeE
Confidence 37788889999999999999998887521 0 01111111111121111 10 00111256
Q ss_pred ccccCcccCCCccccCCCCCcccccccccCCccCc-ccHHHHHHHHHHhhhcccCCCCCceEEEEeCChHHHHHHHHHhc
Q 004366 107 ATSQRCIRTNDVENVGRTSRHHTFFEMLGNFSFGD-YFKKEAIQWAWEFSTVEFGLPANRLWISVYEDDDEAFEIWNKEV 185 (759)
Q Consensus 107 ~~~QkCiR~nDldnVG~t~rH~TfFEMlGn~Sfgd-YfK~eai~~awefLt~~l~l~~~rl~vTv~~~D~e~~~iW~~~~ 185 (759)
....+|.|... .| ..|..=|+|+|--.+|+ -.-.|+...+-++|. .|||+..
T Consensus 286 FEIG~VFR~E~---~g--~~hlrEf~Ql~~~iiGs~~~f~dL~~lleeLL~-~LGI~f~--------------------- 338 (417)
T PRK09537 286 FEIGPCYRKES---DG--KEHLEEFTMVNFCQMGSGCTRENLENIIDDFLK-HLGIDYE--------------------- 338 (417)
T ss_pred EEEeceEecCC---CC--CCCcceEEEEEEEEeCCchHHHHHHHHHHHHHH-HCCCCcE---------------------
Confidence 67778888743 22 35777788888777765 223567777777775 5677411
Q ss_pred CCCCCceeccCCCCCccCCCCCCCCCCceEEEEecCCCCCCCCCCCCCCCceEEEeeeecccccccCCCccccCccCccc
Q 004366 186 GVPVEHIKRMGADDNFWNSGATGPCGPCSEIYYDFHPDRGCSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNID 265 (759)
Q Consensus 186 g~~~~~I~~~~~~dNfW~~G~~GpcGPcsEI~~d~g~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~~~~Lp~k~ID 265 (759)
|. .++ + +.. |+|.+|.++ ..||++-+|=+-+- .-. -.|+.+++=
T Consensus 339 ------i~----s~~-~-fi~----GR~adI~~g-----------------~~el~~G~fGEi~V--Le~-fGI~~PVva 382 (417)
T PRK09537 339 ------II----GDN-C-MVY----GDTIDIMHG-----------------DLELSSAVVGPIPL--DRE-WGIDKPWIG 382 (417)
T ss_pred ------Ee----cCC-c-cee----cCeEEEEeC-----------------CEEEeeEEEEEEeh--hhh-cCCCCceEE
Confidence 11 112 1 122 567788852 25665556655521 111 236677899
Q ss_pred ccchHHHHHHHHhCCCC
Q 004366 266 TGLGLERIARILQKVPN 282 (759)
Q Consensus 266 TGmGlERl~~vlqg~~s 282 (759)
-|+|||||+++..|..+
T Consensus 383 ~EIdLerL~~~~~g~~~ 399 (417)
T PRK09537 383 AGFGLERLLKVKHGYKN 399 (417)
T ss_pred EEEeHHHHHHHHhCcHH
Confidence 99999999999988764
No 76
>TIGR00747 fabH 3-oxoacyl-(acyl-carrier-protein) synthase III. Active site residues include Cys112, His244 and Asn274 of E. coli FabH. Cys-112 is the site of acyl group attachment.
Probab=26.77 E-value=24 Score=38.13 Aligned_cols=51 Identities=14% Similarity=0.201 Sum_probs=38.9
Q ss_pred hcccCCCCCce-EEEEeCChHHHHHHHHHhcCCCCCceeccCCCCCccCCCCCCCCCCce
Q 004366 156 TVEFGLPANRL-WISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGATGPCGPCS 214 (759)
Q Consensus 156 t~~l~l~~~rl-~vTv~~~D~e~~~iW~~~~g~~~~~I~~~~~~dNfW~~G~~GpcGPcs 214 (759)
.+..|++++.+ |+=.+....-..+-+.+.+|+|++|+. |.+...|+||.|+
T Consensus 229 l~~~g~~~~di~~~~~h~~~~~~~~~~~~~lgi~~~k~~--------~~~~~~Gn~~sas 280 (318)
T TIGR00747 229 LEANGLDPEDIDWFVPHQANLRIIEALAKRLELDMSQVV--------KTVHKYGNTSAAS 280 (318)
T ss_pred HHHcCCCHHHCCEEEECCCCHHHHHHHHHHcCCCHHHee--------ehHhhhCCHHHHH
Confidence 34579988777 444667788888889999999999984 3455678999776
No 77
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=26.65 E-value=35 Score=40.71 Aligned_cols=29 Identities=24% Similarity=0.282 Sum_probs=25.0
Q ss_pred CcccccchHHHHHHHHhCCCCcccccccH
Q 004366 262 KNIDTGLGLERIARILQKVPNNYETDLIF 290 (759)
Q Consensus 262 k~IDTGmGlERl~~vlqg~~s~ydtd~F~ 290 (759)
+|=-.|+|||||++++-|..+.=++-+|.
T Consensus 514 PhgG~GiGlERLvM~~lg~~nIR~v~lFP 542 (550)
T PTZ00401 514 PHGGFGVGLERVVMLYLGLSNVRLASLFP 542 (550)
T ss_pred CCceEEEhHHHHHHHHhCCCcHheeecCC
Confidence 56678999999999999999988887764
No 78
>PTZ00425 asparagine-tRNA ligase; Provisional
Probab=26.63 E-value=34 Score=41.05 Aligned_cols=50 Identities=22% Similarity=0.339 Sum_probs=34.9
Q ss_pred CCCcccccCcccCCCccccCCCCCcccccccccC-CccCccc-----HHHHHHHHHHhhh
Q 004366 103 VPRAATSQRCIRTNDVENVGRTSRHHTFFEMLGN-FSFGDYF-----KKEAIQWAWEFST 156 (759)
Q Consensus 103 ~~r~~~~QkCiR~nDldnVG~t~rH~TfFEMlGn-~SfgdYf-----K~eai~~awefLt 156 (759)
..|+-...+|.|+-|. +|.||++=|-||=- .+|.||. -++-|...|..+.
T Consensus 343 ~~rVf~i~p~FRaE~s----~t~RHL~EFt~lE~E~af~d~~d~m~~~E~li~~v~~~vl 398 (586)
T PTZ00425 343 MGDVYTFGPTFRAENS----HTSRHLAEFWMIEPEIAFADLYDNMELAESYIKYCIGYVL 398 (586)
T ss_pred cCCEEEEeceEeCCCC----CCCCCCcccceEEEEEecCCHHHHHHHHHHHHHHHHHHHh
Confidence 6888899999999766 47899977877644 4777763 2344555555443
No 79
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=26.14 E-value=1.2e+02 Score=33.11 Aligned_cols=69 Identities=12% Similarity=-0.061 Sum_probs=48.3
Q ss_pred HHhhhhCCCccCCCCCchHHHHHHHHHHHHHHHhCCCCCCCCCccccchHHHHHHHHHHh-----ccCChhhHHhHH-HH
Q 004366 325 IVYLLSDGVFPSNIGRGYVVRRLIRRAVRTGRLLGIKGDGRGNLEGAFLPSIAEKAIELS-----THIDSDVKAREQ-RI 398 (759)
Q Consensus 325 ~~~~i~DG~~Psn~grGYvlRrilRRa~r~~~~lg~~~~~~~~~~~~~l~~lv~~v~~~m-----~~~yPeL~~~~~-~I 398 (759)
--|++.|-.-| .|.-.++++.++-+...+...+...| .+.+++..+++.+ +..|||+.+.++ .+
T Consensus 231 gp~~~~d~~~~--~g~~~~~~k~~~l~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (308)
T PRK06129 231 GPFETIDLNAP--GGVADYAQRYGPMYRRMAAERGQPVP--------WDGELVARVEAERRAALPLDQLAARQAWRDRRL 300 (308)
T ss_pred CHHHHHhcccc--ccHHHHHHHHHHHHHhhccccCCCch--------hhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 56778885334 36666677777777777777777777 7889999888888 466888888774 35
Q ss_pred HHHHH
Q 004366 399 LEELK 403 (759)
Q Consensus 399 ~~ii~ 403 (759)
.+++.
T Consensus 301 ~~~~~ 305 (308)
T PRK06129 301 MALAA 305 (308)
T ss_pred HHHHH
Confidence 55443
No 80
>PLN02532 asparagine-tRNA synthetase
Probab=25.92 E-value=37 Score=41.12 Aligned_cols=29 Identities=17% Similarity=0.186 Sum_probs=25.5
Q ss_pred CcccccchHHHHHHHHhCCCCcccccccH
Q 004366 262 KNIDTGLGLERIARILQKVPNNYETDLIF 290 (759)
Q Consensus 262 k~IDTGmGlERl~~vlqg~~s~ydtd~F~ 290 (759)
+|=--|||||||++.+-|.++.=|+-+|.
T Consensus 597 PHgGfGLG~ERLvm~ltGl~nIRDvi~FP 625 (633)
T PLN02532 597 KHSGFSLGFELMVLFATGLPDVRDAIPFP 625 (633)
T ss_pred CCeEEEEhHHHHHHHHhCCCchheEeecC
Confidence 67778999999999999999998886664
No 81
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=25.65 E-value=41 Score=38.83 Aligned_cols=78 Identities=23% Similarity=0.350 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHhhCCCeeecCccCcC-C--CCccceeccccccccc-cccccCCC--------CCCCcccccCcccCCCc
Q 004366 51 DSIRKRFLDFYASRGHKVLPSASLVP-E--DPTVLLTIAGMLQFKP-IFLGKVPR--------QVPRAATSQRCIRTNDV 118 (759)
Q Consensus 51 ~eiR~~Fl~fF~~~gH~~v~s~slvp-~--d~tllf~nAGm~~fk~-~f~g~~~p--------~~~r~~~~QkCiR~nDl 118 (759)
+.|.+.|-+||.++|.+-|.+-=+++ + .-+-||-. ..|.. .||.+..- ...|+-+..+++|+
T Consensus 138 s~i~~a~~eff~~~gF~eV~tP~i~~~~~EGg~elF~v---~yf~~~a~LtqS~QLyke~~~~al~rVf~igP~FRA--- 211 (435)
T COG0017 138 SSILRAIREFFYENGFTEVHTPIITASATEGGGELFKV---DYFDKEAYLTQSPQLYKEALAAALERVFTIGPTFRA--- 211 (435)
T ss_pred HHHHHHHHHHHHhCCcEEecCceEeccCCCCCceeEEE---eecCcceEEecCHHHHHHHHHHHhCceEEecCceec---
Confidence 57788999999999999988776666 2 33344432 12322 44433211 36789999999999
Q ss_pred cccCCCCCccccccccc
Q 004366 119 ENVGRTSRHHTFFEMLG 135 (759)
Q Consensus 119 dnVG~t~rH~TfFEMlG 135 (759)
|+-- |.||++=|-|+=
T Consensus 212 E~s~-T~RHL~EF~~ld 227 (435)
T COG0017 212 EKSN-TRRHLSEFWMLD 227 (435)
T ss_pred CCCC-CcchhhhHheec
Confidence 2222 899999987753
No 82
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=25.52 E-value=26 Score=41.00 Aligned_cols=130 Identities=24% Similarity=0.314 Sum_probs=66.9
Q ss_pred CcccccceeeeccCCCcccc-----CcCCCcCCCchhhcccCCC------CC---CChHHHHHHH----------HHHHh
Q 004366 7 SILPCGHFLFKGATGVPSAR-----STSASVQPLTEEVEDKSQD------FP---SSGDSIRKRF----------LDFYA 62 (759)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~------~~---~~~~eiR~~F----------l~fF~ 62 (759)
-|+-++-.+|+..||..|-. --+-|..|+|++----.+. +. +.-.|.|+.| -.|+.
T Consensus 116 Diigv~G~~~~T~~GelSv~v~~~~lLsKsL~pLPeK~hgL~D~E~RyR~RylDLi~N~e~r~~f~~Rs~ii~~iR~fl~ 195 (502)
T COG1190 116 DIIGVEGPLFKTKTGELSVSVEELRLLSKSLRPLPEKFHGLTDKEIRYRQRYLDLIVNPESRQTFIKRSKIIRAIREFLD 195 (502)
T ss_pred CEEeeeeeeeecCCCceEEEEEEEeeecccCCCCChhhcCCccHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 36667778888888876543 3456779999886433321 11 1223444444 36888
Q ss_pred hCCCeeecC--ccCcC-CCCccceeccccccccc-cccccCCC---------CCCCcccccCcccCCCccccCCCCCccc
Q 004366 63 SRGHKVLPS--ASLVP-EDPTVLLTIAGMLQFKP-IFLGKVPR---------QVPRAATSQRCIRTNDVENVGRTSRHHT 129 (759)
Q Consensus 63 ~~gH~~v~s--~slvp-~d~tllf~nAGm~~fk~-~f~g~~~p---------~~~r~~~~QkCiR~nDldnVG~t~rH~T 129 (759)
++|..-|+. -..|| ...--.|++- +|.+.- .+|-.++- -..|+--.-++.| |=|.|.+|--
T Consensus 196 ~~gFlEVETP~lq~i~GGA~ArPF~Th-hNald~dlyLRIApELyLKRliVGG~erVfEIgr~FR-----NEGid~tHNP 269 (502)
T COG1190 196 DRGFLEVETPMLQPIPGGAAARPFITH-HNALDMDLYLRIAPELYLKRLIVGGFERVFEIGRNFR-----NEGIDTTHNP 269 (502)
T ss_pred HCCCeEeccccccccCCCcccccceee-ecccCCceEEeeccHHHHHHHHhcCchhheeeccccc-----cCCCccccCc
Confidence 888877743 23333 1111112211 111111 22211100 1122222223333 5678899999
Q ss_pred ccccccC-CccCcc
Q 004366 130 FFEMLGN-FSFGDY 142 (759)
Q Consensus 130 fFEMlGn-~SfgdY 142 (759)
=|.||-. |...||
T Consensus 270 EFTmlE~Y~AYaDy 283 (502)
T COG1190 270 EFTMLEFYQAYADY 283 (502)
T ss_pred chhhHHHHHHHhHH
Confidence 9999876 455665
No 83
>PLN02530 histidine-tRNA ligase
Probab=25.47 E-value=3e+02 Score=32.25 Aligned_cols=112 Identities=14% Similarity=0.195 Sum_probs=69.9
Q ss_pred hHHHHHHHHHHHhhCCCeeecCccCcCCCCccceecc------cccccccccccc-------CCCC-------------C
Q 004366 50 GDSIRKRFLDFYASRGHKVLPSASLVPEDPTVLLTIA------GMLQFKPIFLGK-------VPRQ-------------V 103 (759)
Q Consensus 50 ~~eiR~~Fl~fF~~~gH~~v~s~slvp~d~tllf~nA------Gm~~fk~~f~g~-------~~p~-------------~ 103 (759)
-..|.+.+.+-|+++|...|..-.+-+-| ++...+ -|..|.+- .|. .+|| .
T Consensus 87 ~~~i~~~~~~~~~~~Gy~~I~tP~lE~~e--l~~~~~g~~~~~~~y~f~D~-~g~~l~LRpD~T~~iaR~~~~~~~~~~~ 163 (487)
T PLN02530 87 RNWLFDHFREVSRLFGFEEVDAPVLESEE--LYIRKAGEEITDQLYNFEDK-GGRRVALRPELTPSLARLVLQKGKSLSL 163 (487)
T ss_pred HHHHHHHHHHHHHHcCCEeccccccchHH--HhccccCcccccceEEEECC-CCCEEecCCCCcHHHHHHHHhcccccCC
Confidence 36788999999999999998654443312 332222 25555431 111 0111 1
Q ss_pred -CCcccccCcccCCCccccCCC-CCcccccccccCCccCcccHHHHHHHHHHhhhcccCCCCCceEE
Q 004366 104 -PRAATSQRCIRTNDVENVGRT-SRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPANRLWI 168 (759)
Q Consensus 104 -~r~~~~QkCiR~nDldnVG~t-~rH~TfFEMlGn~SfgdYfK~eai~~awefLt~~l~l~~~rl~v 168 (759)
-|+..+++|.|..- ..-|+. -.|..-+|++|.=|. +-..|.|.+|+++|. .|||+...+.+
T Consensus 164 P~r~~y~g~vfR~e~-~q~gr~REf~Q~giEiiG~~~~--~aDaEvi~l~~~~l~-~lgl~~~~~~i 226 (487)
T PLN02530 164 PLKWFAIGQCWRYER-MTRGRRREHYQWNMDIIGVPGV--EAEAELLAAIVTFFK-RVGITSSDVGI 226 (487)
T ss_pred CeEEEEEcCEEcCcC-CCCCCccceEEcCeeEeCCCCc--chhHHHHHHHHHHHH-HcCCCCCceEE
Confidence 25667788888633 444543 445777999997665 346899999999885 67987544433
No 84
>PLN02603 asparaginyl-tRNA synthetase
Probab=24.98 E-value=38 Score=40.49 Aligned_cols=29 Identities=21% Similarity=0.281 Sum_probs=25.4
Q ss_pred CcccccchHHHHHHHHhCCCCcccccccH
Q 004366 262 KNIDTGLGLERIARILQKVPNNYETDLIF 290 (759)
Q Consensus 262 k~IDTGmGlERl~~vlqg~~s~ydtd~F~ 290 (759)
++---|||+|||++.+-|.++.=|+-+|.
T Consensus 529 PhgGfGlG~ERLvm~ltg~~nIRdvi~FP 557 (565)
T PLN02603 529 PHAGFGLGFERLVQFATGIDNIRDAIPFP 557 (565)
T ss_pred CCceeEEcHHHHHHHHhCCCchhheeecc
Confidence 67778999999999999999998886664
No 85
>PRK12445 lysyl-tRNA synthetase; Reviewed
Probab=24.96 E-value=39 Score=39.88 Aligned_cols=82 Identities=24% Similarity=0.420 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhhCCCeeecCccCcC--C-C---C----------ccceeccccccccccccccCCCCCCCcccccCcccC
Q 004366 52 SIRKRFLDFYASRGHKVLPSASLVP--E-D---P----------TVLLTIAGMLQFKPIFLGKVPRQVPRAATSQRCIRT 115 (759)
Q Consensus 52 eiR~~Fl~fF~~~gH~~v~s~slvp--~-d---~----------tllf~nAGm~~fk~~f~g~~~p~~~r~~~~QkCiR~ 115 (759)
.|-+.+-+||.++|...|..--|.+ . . | .+++..|.....|-.+.| -..|+-..-+|+|.
T Consensus 189 ~i~~~iR~f~~~~gFiEVeTPiL~~~~gGa~a~pF~t~~~~~~~~~yL~~SpELylKrlivg----G~~rVfeIg~~FRn 264 (505)
T PRK12445 189 KILAAIRQFMVARGFMEVETPMMQVIPGGASARPFITHHNALDLDMYLRIAPELYLKRLVVG----GFERVFEINRNFRN 264 (505)
T ss_pred HHHHHHHHHHHHCCCEEeeCCeeEecCCCCcccceecccccCCcceeeecCHHHHHHHHHhc----cCCcEEEEehhccC
Confidence 4455667899999988774433322 1 1 1 122222322222222221 25677788899999
Q ss_pred CCccccCCCCCcccccccccC-CccCcc
Q 004366 116 NDVENVGRTSRHHTFFEMLGN-FSFGDY 142 (759)
Q Consensus 116 nDldnVG~t~rH~TfFEMlGn-~SfgdY 142 (759)
-++ |.||..=|.||=- ++|.||
T Consensus 265 E~~-----~~rH~pEFTmlE~y~a~~d~ 287 (505)
T PRK12445 265 EGI-----SVRHNPEFTMMELYMAYADY 287 (505)
T ss_pred CCC-----CCCcCcccceeeeeeecCCH
Confidence 663 6799999999854 466776
No 86
>PLN02221 asparaginyl-tRNA synthetase
Probab=24.54 E-value=38 Score=40.53 Aligned_cols=46 Identities=24% Similarity=0.341 Sum_probs=34.5
Q ss_pred CCCcccccCcccCCCccccCCCCCcccccccccC-CccCcccHHHHHHHHHHh
Q 004366 103 VPRAATSQRCIRTNDVENVGRTSRHHTFFEMLGN-FSFGDYFKKEAIQWAWEF 154 (759)
Q Consensus 103 ~~r~~~~QkCiR~nDldnVG~t~rH~TfFEMlGn-~SfgdYfK~eai~~awef 154 (759)
..|+-...+|+|+-.. .|.||++=|-||-- .+|.|| ++.+.++=++
T Consensus 326 l~rVfeIgP~FRAE~s----~T~RHL~EFtmlE~Emaf~d~--~dvm~l~E~l 372 (572)
T PLN02221 326 LSSVYTFGPTFRAENS----HTSRHLAEFWMVEPEIAFADL--EDDMNCAEAY 372 (572)
T ss_pred cCCeEEEccceecCCC----CCCcccccccceeeeeecCCH--HHHHHHHHHH
Confidence 5788899999999433 48899999999865 478887 5666555444
No 87
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=24.44 E-value=1.7e+02 Score=31.78 Aligned_cols=102 Identities=12% Similarity=0.053 Sum_probs=63.7
Q ss_pred ChHHHHHHHHHHHhhCCCeeecCccCcCCCCccceeccccccccc----------cccc--------c--CCCCCCCccc
Q 004366 49 SGDSIRKRFLDFYASRGHKVLPSASLVPEDPTVLLTIAGMLQFKP----------IFLG--------K--VPRQVPRAAT 108 (759)
Q Consensus 49 ~~~eiR~~Fl~fF~~~gH~~v~s~slvp~d~tllf~nAGm~~fk~----------~f~g--------~--~~p~~~r~~~ 108 (759)
.-++|++++.+-|+++|...|..-.+=--+.-.......|..|.+ =++- . ..+.-.|++-
T Consensus 21 ~~~~i~~~l~~vf~~~Gy~~I~tP~lE~~e~~~~~~~~~~y~~~D~~g~~l~LRpD~T~~iaR~~a~~~~~~~~p~r~~Y 100 (281)
T PRK12293 21 LKREIENVASEILYENGFEEIVTPFFSYHQHQSIADEKELIRFSDEKNHQISLRADSTLDVVRIVTKRLGRSTEHKKWFY 100 (281)
T ss_pred HHHHHHHHHHHHHHHcCCeEeeccceeehhhhcccchhceEEEECCCCCEEEECCcCCHHHHHHHHHhcccCCCceeEEE
Confidence 357899999999999999988654442211000012223444432 2210 0 0111126788
Q ss_pred ccCcccCCCccccCCCCCcccccccccCCccCcccHHHHHHHHHHhhhcccCCC
Q 004366 109 SQRCIRTNDVENVGRTSRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLP 162 (759)
Q Consensus 109 ~QkCiR~nDldnVG~t~rH~TfFEMlGn~SfgdYfK~eai~~awefLt~~l~l~ 162 (759)
+++|.|... .--|..-.|++|.-|. .|+|.+|++.|. .+|++
T Consensus 101 ~g~vfR~~~------rEf~Q~GvEliG~~~~-----~Evi~la~~~l~-~lgl~ 142 (281)
T PRK12293 101 IQPVFRYPS------NEIYQIGAELIGEEDL-----SEILNIAAEIFE-ELELE 142 (281)
T ss_pred eccEEecCC------CcccccCeEeeCCCCH-----HHHHHHHHHHHH-HcCCC
Confidence 888998742 3445777899999885 599999999886 67885
No 88
>PRK08561 rps15p 30S ribosomal protein S15P; Reviewed
Probab=24.40 E-value=2.2e+02 Score=28.39 Aligned_cols=50 Identities=18% Similarity=0.347 Sum_probs=35.8
Q ss_pred hhcCCCCCCCChHHHHHHhhcCCCCh------hhHHHHHHHcCCeeCh-hhHHHHHHHHH
Q 004366 431 TRESGSVPRLSGQDAFLLYDTFGFPV------EITKEVAEEHGVSVDM-KGFDIEMENQR 483 (759)
Q Consensus 431 ~~~~g~~~~l~g~~af~LydTyGfP~------dlt~~ia~e~g~~vd~-~~F~~~~~~~r 483 (759)
+.++| .-|.+.-..|-|.||+|- -=+..|++++|+.-++ +..+.++++..
T Consensus 40 lakkG---~~pSqIG~~LRD~~gip~Vk~vtG~ki~~iLk~~gl~p~iPEDL~~L~~ri~ 96 (151)
T PRK08561 40 LAKQG---YSPSMIGIILRDQYGIPDVKLITGKKITEILEENGLAPEIPEDLRNLIKKAV 96 (151)
T ss_pred HHHCC---CCHHHhhhhHhhccCCCceeeeccchHHHHHHHcCCCCCCcHHHHHHHHHHH
Confidence 43556 245667789999999994 2356889999998777 46677776543
No 89
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional
Probab=23.28 E-value=44 Score=38.61 Aligned_cols=84 Identities=21% Similarity=0.320 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhhCCCeeecCccCcCC--CCc-cceeccccccc-cccccccCCC---------CCCCcccccCcccCCCc
Q 004366 52 SIRKRFLDFYASRGHKVLPSASLVPE--DPT-VLLTIAGMLQF-KPIFLGKVPR---------QVPRAATSQRCIRTNDV 118 (759)
Q Consensus 52 eiR~~Fl~fF~~~gH~~v~s~slvp~--d~t-llf~nAGm~~f-k~~f~g~~~p---------~~~r~~~~QkCiR~nDl 118 (759)
.|-+.+-+||.++|...|..-.++.. +.- -.|.- +.| ++++|-..+- ...|+=..-+|+|.-+.
T Consensus 141 ~i~~~iR~ff~~~gf~EV~TP~L~~~~~eg~~~~f~~---~~~~~~~~L~~Spql~~q~l~~~g~~rVf~i~~~FR~E~~ 217 (437)
T PRK05159 141 EVLRAFREFLYENGFTEIFTPKIVASGTEGGAELFPI---DYFEKEAYLAQSPQLYKQMMVGAGFERVFEIGPVFRAEEH 217 (437)
T ss_pred HHHHHHHHHHHHCCCEEEeCCcccccCCCCCcceEeE---EecCCceEecCCHHHHHHHHHhcCCCcEEEEeceeeCCCC
Confidence 45567789999999988864444321 110 01110 001 3344422211 25778888899998554
Q ss_pred cccCCCCCcccccccccCC-ccCc-c
Q 004366 119 ENVGRTSRHHTFFEMLGNF-SFGD-Y 142 (759)
Q Consensus 119 dnVG~t~rH~TfFEMlGn~-Sfgd-Y 142 (759)
+ |.||..=|.||--. +|.| |
T Consensus 218 ---~-t~rHl~EFt~lE~e~a~~~~~ 239 (437)
T PRK05159 218 ---N-TSRHLNEYTSIDVEMGFIDDH 239 (437)
T ss_pred ---C-CcccchhhheeeeeeeecccH
Confidence 2 56999889998665 6766 5
No 90
>COG4014 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.01 E-value=1e+02 Score=28.04 Aligned_cols=34 Identities=18% Similarity=0.272 Sum_probs=25.8
Q ss_pred ccccccccceEEEEEEeCCeeeeeecCCCeEEEEecCcceec
Q 004366 513 LGYDTLSAKAIVESLLVNGKPVIKVSKGSDVEVLLNRTPFYA 554 (759)
Q Consensus 513 ~gY~~~~~~akVl~i~~~~~~v~~~~~g~~~~VvLD~T~FYp 554 (759)
+.|-.+...++|.+|..+ ++...||+||.|.+|-
T Consensus 15 vrYvnTgTvgrV~dIkkd--------EdG~~WV~LdstdLwY 48 (97)
T COG4014 15 VRYVNTGTVGRVVDIKKD--------EDGDIWVVLDSTDLWY 48 (97)
T ss_pred EEEeecCceeeEEEEEee--------cCCceEEEEecCCcee
Confidence 457777788999999764 2446899999988754
No 91
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed
Probab=22.83 E-value=43 Score=39.37 Aligned_cols=85 Identities=21% Similarity=0.329 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhhCCCeeecCccCcCC--CCc-cceeccccccc-cccccccCCC---------CCCCcccccCcccCCCc
Q 004366 52 SIRKRFLDFYASRGHKVLPSASLVPE--DPT-VLLTIAGMLQF-KPIFLGKVPR---------QVPRAATSQRCIRTNDV 118 (759)
Q Consensus 52 eiR~~Fl~fF~~~gH~~v~s~slvp~--d~t-llf~nAGm~~f-k~~f~g~~~p---------~~~r~~~~QkCiR~nDl 118 (759)
.|-+.+-+||.++|...|..--|.|. ... -.|+.- .+.| ++.+|-..+- -..|+=..-+|+|.-++
T Consensus 177 ~i~~~iR~f~~~~gF~EVeTPiL~~~~~Ga~a~pF~t~-~~~~~~~~yL~~Spql~lk~l~v~g~~rVfei~~~FR~E~~ 255 (491)
T PRK00484 177 KIISAIRRFLDNRGFLEVETPMLQPIAGGAAARPFITH-HNALDIDLYLRIAPELYLKRLIVGGFERVYEIGRNFRNEGI 255 (491)
T ss_pred HHHHHHHHHHHHCCCEEEECCceeccCCCccceeeeec-cccCCCceEeccCHHHHHHHHHhccCCcEEEEecceecCCC
Confidence 45556678999999988855444331 110 122100 0011 1222221110 24677788899998665
Q ss_pred cccCCCCCcccccccccC-CccCcc
Q 004366 119 ENVGRTSRHHTFFEMLGN-FSFGDY 142 (759)
Q Consensus 119 dnVG~t~rH~TfFEMlGn-~SfgdY 142 (759)
+ .||..=|.||=- ++|.||
T Consensus 256 ~-----~rH~pEFt~lE~e~a~~d~ 275 (491)
T PRK00484 256 D-----TRHNPEFTMLEFYQAYADY 275 (491)
T ss_pred C-----CCcCCceEEEEEEEecCCH
Confidence 3 399999999866 577776
No 92
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=22.79 E-value=1.9e+02 Score=32.07 Aligned_cols=28 Identities=18% Similarity=0.325 Sum_probs=23.5
Q ss_pred CcccccchHHHHHHHHhCCCCccccccc
Q 004366 262 KNIDTGLGLERIARILQKVPNNYETDLI 289 (759)
Q Consensus 262 k~IDTGmGlERl~~vlqg~~s~ydtd~F 289 (759)
+|--.|+|||||++++-|.++.=|+-.|
T Consensus 297 p~~G~glGleRL~m~~~g~~~Irdv~~F 324 (329)
T cd00775 297 PTGGLGIGIDRLVMLLTDSNSIRDVILF 324 (329)
T ss_pred CCCcEEecHHHHHHHHcCCCcHHhcccC
Confidence 5667799999999999999988776555
No 93
>PTZ00417 lysine-tRNA ligase; Provisional
Probab=22.36 E-value=45 Score=40.09 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=0.0
Q ss_pred cchHHHHHHHHhCCCCccccccc
Q 004366 267 GLGLERIARILQKVPNNYETDLI 289 (759)
Q Consensus 267 GmGlERl~~vlqg~~s~ydtd~F 289 (759)
|+|+|||++++-|.+|.=|+=+|
T Consensus 556 GiGIDRLvMlltg~~sIrdVi~F 578 (585)
T PTZ00417 556 GLGIDRITMFLTNKNCIKDVILF 578 (585)
T ss_pred EEcHHHHHHHHcCCcchheeecC
No 94
>TIGR00013 taut 4-oxalocrotonate tautomerase family enzyme. 4-oxalocrotonate tautomerase is a homohexamer in which each monomer is very small, at about 62 amino acids. Pro-1 of the mature protein serves as a general base. The enzyme functions in meta-cleavage pathways of aromatic hydrocarbon catabolism. Because several Arg residues located near the active site in the crystal structure of Pseudomonas putida are not conserved among all members of this family, because the literature describes a general role in the isomerization of beta,gamma-unsaturated enones to their alpha,beta-isomers, and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.
Probab=21.65 E-value=1.1e+02 Score=24.80 Aligned_cols=31 Identities=16% Similarity=0.099 Sum_probs=24.5
Q ss_pred cHHHHHHHHHHhhhcccCCCCCceEEEEeCC
Q 004366 143 FKKEAIQWAWEFSTVEFGLPANRLWISVYED 173 (759)
Q Consensus 143 fK~eai~~awefLt~~l~l~~~rl~vTv~~~ 173 (759)
-|++-++-..+.|.+.||.|++.++|.+.+-
T Consensus 16 qK~~l~~~it~~l~~~lg~~~~~v~V~i~e~ 46 (63)
T TIGR00013 16 QKRQLIEGVTEAMAETLGANLESIVVIIDEM 46 (63)
T ss_pred HHHHHHHHHHHHHHHHhCCCcccEEEEEEEc
Confidence 3666677777888889999999999977543
No 95
>PTZ00385 lysyl-tRNA synthetase; Provisional
Probab=20.79 E-value=44 Score=40.63 Aligned_cols=81 Identities=17% Similarity=0.313 Sum_probs=50.3
Q ss_pred HHHHHHHHHHhhCCCeeecCccCcCCCCccceeccccccc--------cccccccCCC---------CCCCcccccCccc
Q 004366 52 SIRKRFLDFYASRGHKVLPSASLVPEDPTVLLTIAGMLQF--------KPIFLGKVPR---------QVPRAATSQRCIR 114 (759)
Q Consensus 52 eiR~~Fl~fF~~~gH~~v~s~slvp~d~tllf~nAGm~~f--------k~~f~g~~~p---------~~~r~~~~QkCiR 114 (759)
+|-+.+-+||.++|...|..--|.+. -..||-.+| ++.||-+.+- -..|+-..-||+|
T Consensus 238 ~I~~aiR~ff~~~gFlEVeTPiL~~~-----~~ga~a~pF~t~~n~~~~~~yL~~SPELylKrLivgG~erVyeIg~~FR 312 (659)
T PTZ00385 238 VMLQALRDYFNERNFVEVETPVLHTV-----ASGANAKSFVTHHNANAMDLFLRVAPELHLKQCIVGGMERIYEIGKVFR 312 (659)
T ss_pred HHHHHHHHHHHHCCCEEeeCCEeecc-----CCCCCccceEeecccCCCCEEecCChHHHHHHHhhcccCCEEEEeceec
Confidence 45566778999999988865544441 011222222 2333432211 2567778889999
Q ss_pred CCCccccCCCCCcccccccccCC-ccCcc
Q 004366 115 TNDVENVGRTSRHHTFFEMLGNF-SFGDY 142 (759)
Q Consensus 115 ~nDldnVG~t~rH~TfFEMlGn~-SfgdY 142 (759)
.-+.+ .||.+=|.||=-. +|.||
T Consensus 313 nE~~~-----~rH~pEFTmlE~y~a~~d~ 336 (659)
T PTZ00385 313 NEDAD-----RSHNPEFTSCEFYAAYHTY 336 (659)
T ss_pred CCCCC-----CCccccccceeeeeecCCH
Confidence 97663 4899999998664 66676
Done!