Query 004366
Match_columns 759
No_of_seqs 331 out of 2092
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 22:57:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004366.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004366hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zze_A Alanyl-tRNA synthetase; 100.0 1E-201 4E-206 1739.6 52.2 649 6-752 18-744 (752)
2 2ztg_A Alanyl-tRNA synthetase; 100.0 2E-187 6E-192 1620.6 48.2 635 6-752 21-730 (739)
3 1yfs_A Alanyl-tRNA synthetase; 100.0 1E-175 4E-180 1432.8 26.6 451 48-519 3-459 (465)
4 3hy0_A Alanyl-tRNA synthetase; 100.0 1E-172 3E-177 1402.3 31.1 422 48-490 2-439 (441)
5 3kew_A DHHA1 domain protein; s 100.0 2.7E-51 9.3E-56 425.8 20.3 215 510-756 2-224 (241)
6 2e1b_A PH0108, 216AA long hypo 100.0 9.1E-48 3.1E-52 393.4 15.5 198 509-752 4-209 (216)
7 1v4p_A Alanyl-tRNA synthetase; 99.9 6.7E-23 2.3E-27 198.9 16.0 134 620-755 4-146 (157)
8 1tke_A Threonyl-tRNA synthetas 99.9 2.4E-22 8.1E-27 206.1 16.5 159 589-757 41-220 (224)
9 1nyr_A Threonyl-tRNA synthetas 99.8 2.5E-19 8.6E-24 209.6 12.2 161 589-757 43-219 (645)
10 1qf6_A THRRS, threonyl-tRNA sy 99.8 1.3E-18 4.4E-23 203.5 15.0 160 589-757 41-220 (642)
11 1nnh_A Asparaginyl-tRNA synthe 92.8 0.18 6E-06 53.4 7.4 102 51-159 19-141 (294)
12 3rf1_A Glycyl-tRNA synthetase 92.7 0.31 1.1E-05 50.6 8.6 174 46-286 23-201 (311)
13 1j5w_A Glycyl-tRNA synthetase 92.4 0.36 1.2E-05 49.9 8.5 173 47-286 12-189 (298)
14 4dh4_A MIF; trimer, isomerase; 61.8 4.1 0.00014 36.3 2.7 30 143-172 72-101 (114)
15 3fwu_A Macrophage migration in 56.4 6.7 0.00023 36.3 3.2 32 140-171 90-121 (133)
16 3b64_A Macrophage migration in 56.3 7 0.00024 34.6 3.2 31 142-172 71-101 (112)
17 3dsq_A Pyrrolysyl-tRNA synthet 55.1 63 0.0022 33.6 10.8 107 50-162 73-205 (288)
18 3djh_A Macrophage migration in 53.8 7.7 0.00026 34.6 3.0 30 143-172 71-100 (114)
19 3kan_A D-dopachrome tautomeras 52.5 8.2 0.00028 34.8 3.0 29 144-172 73-101 (117)
20 2wkb_A Macrophage migration in 51.5 9.1 0.00031 34.7 3.2 32 142-173 71-102 (125)
21 3fwt_A Macrophage migration in 50.2 8.2 0.00028 35.7 2.7 29 143-171 93-121 (133)
22 3t5s_A Gilaa.00834.A, macropha 49.7 8.7 0.0003 35.7 2.8 30 144-173 94-123 (135)
23 1hfo_A Migration inhibitory fa 48.8 8.7 0.0003 33.9 2.5 29 144-172 72-100 (113)
24 2xcz_A Possible ATLS1-like lig 48.8 8.7 0.0003 34.1 2.5 30 143-172 72-101 (115)
25 1uiz_A MIF, macrophage migrati 46.9 9.7 0.00033 33.8 2.5 29 144-172 73-101 (115)
26 2os5_A Acemif; macrophage migr 46.3 10 0.00034 34.0 2.5 29 144-172 73-101 (119)
27 1eov_A ASPRS, aspartyl-tRNA sy 44.6 18 0.00061 40.8 4.8 95 52-156 183-293 (487)
28 2opa_A Probable tautomerase YW 40.6 15 0.00052 28.3 2.5 29 143-171 15-43 (61)
29 1gyx_A YDCE, B1461, hypothetic 40.5 34 0.0012 28.1 4.7 50 143-193 16-67 (76)
30 1otf_A 4-oxalocrotonate tautom 40.1 16 0.00053 28.3 2.5 29 143-171 15-43 (62)
31 3abf_A 4-oxalocrotonate tautom 39.0 15 0.00051 28.7 2.2 29 144-172 17-45 (64)
32 1eh2_A EPS15; calcium binding, 37.1 97 0.0033 27.1 7.5 46 438-483 29-78 (106)
33 1c07_A Protein (epidermal grow 33.6 1E+02 0.0036 25.7 7.0 46 438-483 25-74 (95)
34 3a5y_A GENX, putative lysyl-tR 32.7 17 0.00058 39.1 2.0 100 51-161 40-161 (345)
35 3i7f_A Aspartyl-tRNA synthetas 32.1 47 0.0016 38.0 5.6 82 52-142 249-347 (548)
36 2dq3_A Seryl-tRNA synthetase; 30.8 89 0.0031 34.4 7.5 106 51-162 176-316 (425)
37 1qjt_A EH1, epidermal growth f 29.7 1E+02 0.0034 26.3 6.2 45 438-482 26-74 (99)
38 3m20_A 4-oxalocrotonate tautom 29.5 41 0.0014 26.4 3.4 29 144-172 15-43 (62)
39 1wyd_A Hypothetical aspartyl-t 29.4 21 0.00071 39.6 2.1 95 52-157 139-248 (429)
40 3nem_A Aspartyl-tRNA synthetas 28.7 21 0.00072 39.6 2.0 96 52-154 142-257 (438)
41 1mww_A Hypothetical protein HI 28.7 29 0.001 31.2 2.7 29 143-171 74-102 (128)
42 1n9w_A Aspartyl-tRNA synthetas 28.4 22 0.00074 39.3 2.0 97 51-158 129-241 (422)
43 3bju_A Lysyl-tRNA synthetase; 28.2 22 0.00074 40.4 2.0 98 53-156 182-298 (521)
44 3il3_A 3-oxoacyl-[acyl-carrier 28.1 21 0.00071 37.6 1.8 76 129-214 209-285 (323)
45 3m4p_A Ehasnrs, asparaginyl-tR 27.7 23 0.00077 39.6 2.0 84 52-142 161-257 (456)
46 1e1o_A Lysyl-tRNA synthetase, 27.1 23 0.0008 40.0 2.0 96 53-156 189-298 (504)
47 3a74_A Lysyl-tRNA synthetase; 27.0 24 0.00081 39.9 2.0 98 52-157 179-290 (493)
48 4ex5_A Lysine--tRNA ligase; st 26.9 24 0.00082 40.2 2.0 98 52-155 209-325 (529)
49 3i7f_A Aspartyl-tRNA synthetas 26.8 24 0.00081 40.4 2.0 28 262-289 512-539 (548)
50 2xgt_A Asparaginyl-tRNA synthe 26.8 24 0.00082 39.1 2.0 93 52-154 137-243 (435)
51 1x54_A Asparaginyl-tRNA synthe 26.7 24 0.00083 39.0 2.0 98 52-158 140-250 (434)
52 2aal_A Malonate semialdehyde d 26.1 33 0.0011 31.0 2.5 29 144-172 81-109 (131)
53 3fia_A Intersectin-1; EH 1 dom 26.0 1.2E+02 0.0042 27.5 6.3 46 438-483 47-96 (121)
54 1eov_A ASPRS, aspartyl-tRNA sy 25.9 25 0.00087 39.5 2.0 28 262-289 451-478 (487)
55 3mb2_A 4-oxalocrotonate tautom 25.8 38 0.0013 27.3 2.6 28 144-171 17-44 (72)
56 2x4k_A 4-oxalocrotonate tautom 25.8 30 0.001 26.5 1.9 29 144-172 19-47 (63)
57 1fi6_A EH domain protein REPS1 25.7 1.2E+02 0.004 25.2 5.8 46 438-483 24-73 (92)
58 1iq3_A Ralbp1-interacting prot 25.6 1E+02 0.0034 27.0 5.6 45 438-482 37-85 (110)
59 1apy_A Aspartylglucosaminidase 24.8 92 0.0031 30.0 5.4 51 145-214 107-160 (162)
60 3h78_A PQS biosynthetic enzyme 24.5 21 0.00071 38.2 1.0 75 130-214 240-315 (359)
61 1evl_A Threonyl-tRNA synthetas 24.2 2.9E+02 0.0098 29.6 10.0 113 50-169 33-180 (401)
62 3m21_A Probable tautomerase HP 23.9 42 0.0014 26.6 2.5 28 144-171 19-46 (67)
63 4dfe_A 3-oxoacyl-[acyl-carrier 23.6 23 0.0008 37.2 1.1 75 130-214 220-295 (333)
64 1c0a_A Aspartyl tRNA synthetas 23.5 30 0.001 39.9 2.0 31 259-290 525-555 (585)
65 4i4d_A Peptide synthetase NRPS 23.2 44 0.0015 28.2 2.6 24 177-205 21-44 (93)
66 1l0w_A Aspartyl-tRNA synthetas 23.1 31 0.0011 39.7 2.0 29 262-290 521-549 (580)
67 3a5y_A GENX, putative lysyl-tR 21.3 93 0.0032 33.3 5.2 28 262-289 313-340 (345)
68 3ry0_A Putative tautomerase; o 20.6 54 0.0019 25.7 2.5 29 143-171 15-43 (65)
69 2zc2_A DNAD-like replication p 20.5 70 0.0024 26.3 3.3 27 439-465 17-46 (78)
No 1
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*
Probab=100.00 E-value=1.2e-201 Score=1739.56 Aligned_cols=649 Identities=27% Similarity=0.434 Sum_probs=595.3
Q ss_pred CCcccccceeeeccCCCccccCcCCCc----CCCchhhcccCCCCCCChHHHHHHHHHHHhhCC---CeeecCccCcC-C
Q 004366 6 PSILPCGHFLFKGATGVPSARSTSASV----QPLTEEVEDKSQDFPSSGDSIRKRFLDFYASRG---HKVLPSASLVP-E 77 (759)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~eiR~~Fl~fF~~~g---H~~v~s~slvp-~ 77 (759)
+.|-.||.+||+.+..|+.|.+..-+. +.|+ ..++||++|||++||+||++|| |++|||||||| +
T Consensus 18 ~~c~~c~~~fwt~~~~r~~cgd~~c~~y~fi~~~~-------~~~~~~~~eiR~~fl~fF~~kg~~~H~~v~s~~lvp~~ 90 (752)
T 2zze_A 18 XXCXVCGXPFWTLDPDRETCGDPPCDEYQFIGKPG-------IPRXYTLDEMREXFLRFFEXHEIYPHGRVXRYPVLPRW 90 (752)
T ss_dssp EECTTTCCEEEESCTTCCSCSSTTTSCCCCTTSCS-------SSSCCCHHHHHHHHHHHHHTCSSSCCEECCCCCSSCTT
T ss_pred eeecccCcceeecCCCcCCCCCCCCCCccccCCCc-------ccccCCHHHHHHHHHHHHhccCCCcceEEeccCcccCC
Confidence 469999999999999999999876543 3332 2247999999999999999999 99999999999 8
Q ss_pred CCccceecccccccccccc-ccCCCCCCCcccccCcccCCCccccCCCCCcccccccccCCccC-----cccHHHHHHHH
Q 004366 78 DPTVLLTIAGMLQFKPIFL-GKVPRQVPRAATSQRCIRTNDVENVGRTSRHHTFFEMLGNFSFG-----DYFKKEAIQWA 151 (759)
Q Consensus 78 d~tllf~nAGm~~fk~~f~-g~~~p~~~r~~~~QkCiR~nDldnVG~t~rH~TfFEMlGn~Sfg-----dYfK~eai~~a 151 (759)
|||||||||||+||||||+ |.++||++|+||||||||+|||||||+|+||||||||||||||| ||||+|||+||
T Consensus 91 dptllftnAGm~~fk~~f~~G~~~pp~~r~~~~QkCiR~~DlenVG~t~rHhTfFEMlGnfSFg~~~~~dYfK~eaI~~a 170 (752)
T 2zze_A 91 RDDVLLVGASIMDFQPWVISGEADPPANPLVISQPSIRFTDIDNVGITGRHFTIFEMMAHHAFNYPGXPIYWMDETVELA 170 (752)
T ss_dssp CSSCSSCCSGGGGGTTHHHHTSSCCSSSSEEEEEEEECCTTGGGTTTSSSCCSEEEEEEEEEEECTTCCCCCHHHHHHHH
T ss_pred CCCeeeeecchhhhhHhhcCCCcCCCCCCccccccceecCcHhhcCCCCcchhHHHhCccceeCCCchHHHHHHHHHHHH
Confidence 9999999999999999997 99999999999999999999999999999999999999999999 99999999999
Q ss_pred HHhhhcccCCCCCceEEEEeCChHHHHHHHHHhcCCCCCceeccCCCCCccCCCCCCCCCCceEEEEecCCCCCCCCCCC
Q 004366 152 WEFSTVEFGLPANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGATGPCGPCSEIYYDFHPDRGCSDVDL 231 (759)
Q Consensus 152 wefLt~~l~l~~~rl~vTv~~~D~e~~~iW~~~~g~~~~~I~~~~~~dNfW~~G~~GpcGPcsEI~~d~g~~~~~~~~~~ 231 (759)
|||||++||||++||+. +||||+|| ||||||||||||
T Consensus 171 we~lT~~~gl~~~ri~~-----------------------------~dNfW~~G--GpcGPcsEI~~d------------ 207 (752)
T 2zze_A 171 FEFFTKELXMXPEDITF-----------------------------KENPWAGG--GNAGPAFEVLYR------------ 207 (752)
T ss_dssp HHHHHHTSCCCGGGEEE-----------------------------EECCEEET--TEEECEEEEEET------------
T ss_pred HHHHhhhhhcchhheee-----------------------------ccCcccCC--CCCCCceeEEEC------------
Confidence 99999999999998741 69999999 999999999996
Q ss_pred CCCCceEEEeeeecccc-------------cccCCCccccCccCcccccchHHHHHHHHhCCCCcccccccHHHHHHHHH
Q 004366 232 GDDTRFIEFYNLVFMQY-------------NKKDDGSLEPLKQKNIDTGLGLERIARILQKVPNNYETDLIFPIIKKASE 298 (759)
Q Consensus 232 ~~~~r~lEiwNlVFmq~-------------~~~~~g~~~~Lp~k~IDTGmGlERl~~vlqg~~s~ydtd~F~~li~~i~~ 298 (759)
+||||||||||| || ++|+|.|||+||||||||||||||||||++||||| +|.|||++|++
T Consensus 208 -----glEiwNlVFmq~~~~~~~~~~~~~~~~-~~g~~~~Lp~~~IDTGmGlERl~~vlQg~~snydt-~f~pii~~~~~ 280 (752)
T 2zze_A 208 -----GLEVATLVFMQYXXAPENAPQDQVVVI-XGEKYIPMETXVVDTGYGLERLVWMSQGTPTAYDA-VLGYVVEPLXX 280 (752)
T ss_dssp -----TEEEEEEEEEEEEECCTTCCSCCEEET-TTEEEEEEEEEEEEEEEEHHHHHHHHHCCSSHHHH-HSHHHHHHHHH
T ss_pred -----CEeeeeeeeeeeccccccccccchhcc-cCCeeeeCCccccccccCHHHHHHHHcCCCchHHH-HHHHHHHHHHH
Confidence 299999999999 88 69999999999999999999999999999999999 99999999999
Q ss_pred HhCCCccC--------------Cccc-c--------------------------ccceEEeehhhhhHHhhhhCCCccCC
Q 004366 299 LANVSYAQ--------------SNDR-T--------------------------NLNLKIIGDHLRAIVYLLSDGVFPSN 337 (759)
Q Consensus 299 ~~~~~y~~--------------~~~~-~--------------------------~~~~rviaDH~R~~~~~i~DG~~Psn 337 (759)
++|++|+. +.+. . ++++||||||+||++|||+||++|||
T Consensus 281 ~~g~~y~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~va~~~~~~~~~~~~~~~~~~~~rvIaDH~R~~~f~i~DGv~PsN 360 (752)
T 2zze_A 281 MAGIEKIDEKILMENSRLAGMFDIEDLGDLRYLREQVAKRVGITVEELEKAIRPYELIYAIADHTKALTFMLADGVVPSN 360 (752)
T ss_dssp HHTCCCCCHHHHHHHHHHHHTCCSSSSSCHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSS
T ss_pred hcCCCccchhhhhhhhhccccCCccchhhHHHHHHHHHHhcCCCHHHHhhhccccceEEEehhhhhhhhhhcccCCCcCc
Confidence 99999854 2111 1 46999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHHHHHhCCCCCCCCCccccchHHHHHHHHHHhccCChhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 004366 338 IGRGYVVRRLIRRAVRTGRLLGIKGDGRGNLEGAFLPSIAEKAIELSTHIDSDVKAREQRILEELKREELRFVQTLERGE 417 (759)
Q Consensus 338 ~grGYvlRrilRRa~r~~~~lg~~~~~~~~~~~~~l~~lv~~v~~~m~~~yPeL~~~~~~I~~ii~~EE~~F~~tL~~G~ 417 (759)
+|||||||||||||+|++++||++.| |++||+.|++.|++.||||.++++.|++||+.||++|.+||++|+
T Consensus 361 ~GrGYvlRrilRRa~r~~~~lg~~~~---------l~~lv~~~~~~m~~~ypel~~~~~~I~~vi~~EE~~F~~Tl~~G~ 431 (752)
T 2zze_A 361 VXAGYLARLLIRKSIRHLRELGLEVP---------LSEIVALHIXELHKTFPEFXEMEDIILEMIELEEKXYAETLRRGS 431 (752)
T ss_dssp SHHHHHHHHHHHHHHHHHHHTTCCCC---------HHHHHHHHHHHHTTTCTHHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHhCCCcc---------hhHHHHHHHHHhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCCCCCChHHHHHHhhcCCCChhhHHHHHHHcCCeeChh-hHHHHHHHHHHHHHHhhcccccc
Q 004366 418 KLLDQMLADALSRTRESGSVPRLSGQDAFLLYDTFGFPVEITKEVAEEHGVSVDMK-GFDIEMENQRRQSQAAHNAVKLS 496 (759)
Q Consensus 418 ~~l~~~i~~~~~~~~~~g~~~~l~g~~af~LydTyGfP~dlt~~ia~e~g~~vd~~-~F~~~~~~~r~~sr~~~~~~~~~ 496 (759)
++|+++++ +++++|. +.|||++||+||||||||+|||++||+|+|++||++ +|+++|++||+++|++... .
T Consensus 432 ~~l~~~~~----~~~~~~~-~~l~g~~af~LyDTyGfP~dlt~~ia~e~g~~vd~~~~F~~~m~~q~~~~r~~~~~---~ 503 (752)
T 2zze_A 432 DLVRREIA----KLKKKGI-KEIPVEXLVTFYESHGLTPEIVXEIAEKEGVKVNIPDNFYSMVAKEAERTKEEKGE---E 503 (752)
T ss_dssp HHHHHHHH----HHHHHSC-SCCCHHHHHHHHHHHCCCHHHHHHHHTTSSCCCCCCTTHHHHHHGGGGCC----------
T ss_pred HHHHHHHH----HhhhcCC-CccCHHHHHHHHhccCCCHHHHHHHHHHcCCccCCcccHHHHHHHHHHHHhhcccc---c
Confidence 99999998 6554453 579999999999999999999999999999999998 8999999999998865311 1
Q ss_pred cCChhHHhhhCCCCccccccc---cccceEEEEEEeCCeeeeeecCCCeEEEEecCcceecCCCCCCCCeEEEEeCCCcc
Q 004366 497 VDDSADLAEKIPDTEFLGYDT---LSAKAIVESLLVNGKPVIKVSKGSDVEVLLNRTPFYAESGGQIGDYGFLYVTQGTN 573 (759)
Q Consensus 497 ~~~~~~l~~~~~~T~f~gY~~---~~~~akVl~i~~~~~~v~~~~~g~~~~VvLD~T~FYpEgGGQ~~D~G~I~~~~~~~ 573 (759)
..+...+. ..++|+|+||++ .+++|+|+++.. .+||||+|||||||||||+|+|+|..++.
T Consensus 504 ~~~~~~~~-~~~~T~~l~Y~~~yl~~~~a~Vl~i~~-------------~~VVLD~TpFYpEgGGQ~~D~G~I~~~g~-- 567 (752)
T 2zze_A 504 LVDFELLK-DLPDTRRLYYEDPFMXEFDAXVLRVIX-------------DWVILDATAFYPEGGGQPYDTGVLIVNGR-- 567 (752)
T ss_dssp CCCSSSSS-SSCCCEEHHHHCTTCCEEEEEEEEEET-------------TEEEESEECSCCSBTTBCCCCEEEEETTE--
T ss_pred chhhHHhc-cCCCceeecccCCccceEEEEEEEEEc-------------CEEEEeCCCCCCCCCCCCCCEEEEEeCCE--
Confidence 10001122 357899999999 688999999974 26999999999999999999999987665
Q ss_pred cccceEEEEEEEEeCCCEEEEEEEeeccccCCCCEEEEEEccccchHHHHhccHHHHHHHHHHhHhCCcceeeeeeccCC
Q 004366 574 QQTAVVEVKDVKKSLGSVFVHKGTIREGVLEVGREVEAIVDPKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFD 653 (759)
Q Consensus 574 ~~~~~~~V~dV~k~~~g~ivH~~~~~~g~l~~G~~V~~~VD~~rR~~~mr~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d 653 (759)
.+.|.+|++. +|.++|.+.. .+.|++|++|.++|||+||+.+|++|||+|||++||+++||.+++|+|+++.++
T Consensus 568 ----~~~V~dv~k~-~g~ivH~~~~-~~~l~vGd~V~~~VD~~rR~~~mr~HTAtHLL~~ALr~vlG~~v~q~Gs~v~~d 641 (752)
T 2zze_A 568 ----EVXVTNVQXV-GXVIIHXVED-PGAFXEGMIVHGXIDWXRRIQHMRHHTGTHVLMGALVRVLGRHVWQAGSQLTTD 641 (752)
T ss_dssp ----EEEEEEEEEE-TTEEEEEESC-GGGCCTTCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECSS
T ss_pred ----EEEEEeeeec-CcEEEEeccc-cCccCcCCeEEEEEeHHHHHHHHHHhHHHHHHHHHHHHHcCCceeeecCcccCC
Confidence 7999999998 8999999985 477999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEecCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEcCHHHHHHhchhhhc--CCCCCCcEEEEEECCccccccccCC
Q 004366 654 RLRFDFNFHRPLLDTELEEIERLINGWIGDANLLQTKVMALDDAKRAGAIAMF--GEKYGEQVKISSKMYVLWRFLVCLW 731 (759)
Q Consensus 654 ~~R~DF~~~~~lt~eel~~IE~~vNeiI~~~~pV~~~~~~~eEA~~~~~~~lf--~eky~~~VRVV~Ig~~~~d~~~CgG 731 (759)
++||||++++++|++++++||+.||++|++|+||++.+++++||++.+++++| +++|++.||||+||+ +|.++|||
T Consensus 642 ~~rfDFs~~~~lt~edL~~IE~~vNeiI~~nlpV~~~~~s~eEA~~~~~~~lf~~ge~ygd~VRVV~IGd--~svelCGG 719 (752)
T 2zze_A 642 WARLDISHYXRISEEELXEIEMLANRIVMEDRXVTWEWLPRTTAEQXYGFRLYQGGVVPGREIRVVXIED--WDVQACGG 719 (752)
T ss_dssp CEEEEEECSSCCCHHHHHHHHHHHHHHHHHTCBEEEEEEEHHHHHHHHCGGGCSSCCCCSSEEEEEEETT--TEEEECCS
T ss_pred ceEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCccceeecCHHHHhhcchhhhhcCCCCCCCeEEEEEECC--ceeCCCCC
Confidence 99999999999999999999999999999999999999999999999888888 899999999999998 89999999
Q ss_pred ccc----ccCcEEEEeeecCCCCce
Q 004366 732 NFV----VEPMLTILLKSEPSKSFL 752 (759)
Q Consensus 732 THV----eIG~IkIl~~~~~gk~~~ 752 (759)
||| +||.|||++.+.+++|.+
T Consensus 720 THV~nTgeIG~fKIls~s~i~~Gvr 744 (752)
T 2zze_A 720 THLPSTGLVGPIXILRTERIQDGVE 744 (752)
T ss_dssp CCCSBGGGGCCEEEEEEEEEETTEE
T ss_pred CccCCHhHccEEEEEEEEEEcCCEE
Confidence 999 899999999998899864
No 2
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Probab=100.00 E-value=1.7e-187 Score=1620.64 Aligned_cols=635 Identities=29% Similarity=0.484 Sum_probs=584.3
Q ss_pred CCcccccceeeeccCCCccccCcCCCc----CCCchhhcccCCCCCCChHHHHHHHHHHHhhCCCeeecCccCcC-CCCc
Q 004366 6 PSILPCGHFLFKGATGVPSARSTSASV----QPLTEEVEDKSQDFPSSGDSIRKRFLDFYASRGHKVLPSASLVP-EDPT 80 (759)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~eiR~~Fl~fF~~~gH~~v~s~slvp-~d~t 80 (759)
+.|-.||.+||+.+..|+.|.+..-+. +.|+. .++||++|||++||+||+++||+++||||||| +|||
T Consensus 21 ~~c~~cg~~fwt~~~~r~~cgd~~c~~y~fi~~~~~-------~~~~~~~eir~~f~~ff~~~gh~~~~s~~lvp~~dpt 93 (739)
T 2ztg_A 21 KRCPKCGKHFWTADPEREICGDPPCESYSFIGNPVF-------KKPFELDEMREYYLNFFERRGHGRIERYPVVARWRTD 93 (739)
T ss_dssp ECCCSSSSCEEECCSSCCCCCSSSSCCCCCTTSCSS-------SSCCCHHHHHHHHHHHHHTTTCEECCCCCSBCTTCSS
T ss_pred eECCCCCCceecCCCCcCCCCCCCCCCccccCCCCc-------CCCCCHHHHHHHHHHHHHHCCCEEeCCcCcCCCCCCC
Confidence 579999999999999999999877544 33322 24699999999999999999999999999999 8999
Q ss_pred cceecccccccccccc-ccCCCCCCCcccccCcccCCCccccCCCCCcccccccccCCccC-----cccHHHHHHHHHHh
Q 004366 81 VLLTIAGMLQFKPIFL-GKVPRQVPRAATSQRCIRTNDVENVGRTSRHHTFFEMLGNFSFG-----DYFKKEAIQWAWEF 154 (759)
Q Consensus 81 llf~nAGm~~fk~~f~-g~~~p~~~r~~~~QkCiR~nDldnVG~t~rH~TfFEMlGn~Sfg-----dYfK~eai~~awef 154 (759)
||||||||+||||||+ |..+||++|++++|||||+|||||||+|+||||||||||||||| ||||+|||+|||||
T Consensus 94 llft~agm~~fkp~~~~g~~~p~~~~~~~~Q~ciR~~D~envg~t~rH~tfFeMlgn~sFg~~~~~dYfK~eai~~~~e~ 173 (739)
T 2ztg_A 94 IYLTIASIADFQPFVTSGVAPPPANPLTISQPCIRLDDLDSVGRTGRHLTLFEMMAHHAFNYPGKEIYWKNETVAYCTEL 173 (739)
T ss_dssp BSBCCSGGGGGTTTTTTSSSCCSSSSEEEEEEEECGGGGGGTTTSSSCCSEEEEEEEEEEEBTTBCSCCHHHHHHHHHHH
T ss_pred ceeeecChhhCcHhHhCCCCCCCCCCcccccccccCcccccCCCCCcchhhhhccCccccCCCccccchHHHHHHHHHHH
Confidence 9999999999999997 99999999999999999999999999999999999999999999 99999999999999
Q ss_pred hhcccCCCCCceEEEEeCChHHHHHHHHHhcCCCCCceeccCCCCCccCCCCCCCCCCceEEEEecCCCCCCCCCCCCCC
Q 004366 155 STVEFGLPANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGATGPCGPCSEIYYDFHPDRGCSDVDLGDD 234 (759)
Q Consensus 155 Lt~~l~l~~~rl~vTv~~~D~e~~~iW~~~~g~~~~~I~~~~~~dNfW~~G~~GpcGPcsEI~~d~g~~~~~~~~~~~~~ 234 (759)
| ++|||||+||. + +||||+|| ||||||||||||
T Consensus 174 l-~~~g~~~~~i~--------------------------~---~dnfW~~g--Gp~Gpc~Ei~~d--------------- 206 (739)
T 2ztg_A 174 L-NELGVKKEDIV--------------------------Y---KEEPWAGG--GNAGPCLEAIVG--------------- 206 (739)
T ss_dssp H-HHHTCCGGGCE--------------------------E---EEEEEEET--TEEEEEEEEEET---------------
T ss_pred H-HHhCCCHHHee--------------------------e---ccCcccCC--CCCCCeeEEEEC---------------
Confidence 9 78999999752 1 79999999 999999999996
Q ss_pred CceEEEeeeecccccccCCCccc-------cCccCcccccchHHHHHHHHhCCCCcccccccHHHHHHHHHHhCCCcc--
Q 004366 235 TRFIEFYNLVFMQYNKKDDGSLE-------PLKQKNIDTGLGLERIARILQKVPNNYETDLIFPIIKKASELANVSYA-- 305 (759)
Q Consensus 235 ~r~lEiwNlVFmq~~~~~~g~~~-------~Lp~k~IDTGmGlERl~~vlqg~~s~ydtd~F~~li~~i~~~~~~~y~-- 305 (759)
+|||||+|||||||+++|.+. |||+|+||||||||||||+|||++||||| +|.|||++|++++|++|+
T Consensus 207 --g~EiwnlVfmq~~r~~~g~~~~~~~~y~~l~~~~iDtG~GlER~~~~lqg~~s~yd~-~f~pii~~~~~~~g~~y~~~ 283 (739)
T 2ztg_A 207 --GLEVATLVFMNLEEHPEGDIEIKGARYRKMDNYIVDTGYGLERFVWASKGTPTVYDA-IFPEVVDTIIDNSNVSFNRE 283 (739)
T ss_dssp --TEEEEEEEEEEEEECTTCCEEETTEEEEEEEEEEEEEEEEHHHHHHHHHCCSSHHHH-HCHHHHHHHHHTSCCSSCTT
T ss_pred --CEEeeeeeeEEeeecCCCceeecCccccCCCCCeEecCcCHHHHHHHHcCCCchHHh-hHHHHHHHHHHHhCCCcccc
Confidence 299999999999999999998 99999999999999999999999999999 999999999999999985
Q ss_pred CC-----------------ccc-c-------c-------------------cceEEeehhhhhHHhhhhCCCccCCCCCc
Q 004366 306 QS-----------------NDR-T-------N-------------------LNLKIIGDHLRAIVYLLSDGVFPSNIGRG 341 (759)
Q Consensus 306 ~~-----------------~~~-~-------~-------------------~~~rviaDH~R~~~~~i~DG~~Psn~grG 341 (759)
.+ .+. . + +++||||||+||++||||||++|||+|||
T Consensus 284 ~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~a~~~~~~~~~~~~~~~~~~~~rviaDH~R~~~f~i~DGv~PsN~grG 363 (739)
T 2ztg_A 284 DERVRRIVAESSKLAGIMGELRGERLNQLRKSVADTVGVSVEELEGIVVPLEKVYSLADHTRCILFMLGDGLVPSNAGAG 363 (739)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCTHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSHHH
T ss_pred ccchhhhhhhhhhcccccCcccchhHHHHHHHhhhhcccchhhhhhhccccceEEEEecHHHHHHHHhccCcccCCCCcc
Confidence 11 001 0 1 58999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCCCCCccccchHHHHHHHHHHhccCChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004366 342 YVVRRLIRRAVRTGRLLGIKGDGRGNLEGAFLPSIAEKAIELSTHIDSDVKAREQRILEELKREELRFVQTLERGEKLLD 421 (759)
Q Consensus 342 YvlRrilRRa~r~~~~lg~~~~~~~~~~~~~l~~lv~~v~~~m~~~yPeL~~~~~~I~~ii~~EE~~F~~tL~~G~~~l~ 421 (759)
||||||||||+|++++||++.| |++||+.|++.|++ ||.++++.|++||+.||++|.+||++|+++|+
T Consensus 364 YvlRrilRRa~r~~~~lg~~~~---------l~~lv~~~~~~m~~---el~~~~~~I~~vi~~EE~~F~~Tl~~G~~~l~ 431 (739)
T 2ztg_A 364 YLARLMIRRSLRLAEELELGLD---------LYDLVEMHKKILGF---EFDVPLSTVQEILELEKERYRTTVSKGTRLVE 431 (739)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSC---------HHHHHHHHHHHHCC---CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCCcc---------HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988 89999999999999 99999999999999999999999999999999
Q ss_pred HHHHHHHhhhhcCCCCCCCChHHHHHHhhcCCCChhhHHHHHHHcCCeeChh-hHHHHHHHHHHHHHHhhcccccccCCh
Q 004366 422 QMLADALSRTRESGSVPRLSGQDAFLLYDTFGFPVEITKEVAEEHGVSVDMK-GFDIEMENQRRQSQAAHNAVKLSVDDS 500 (759)
Q Consensus 422 ~~i~~~~~~~~~~g~~~~l~g~~af~LydTyGfP~dlt~~ia~e~g~~vd~~-~F~~~~~~~r~~sr~~~~~~~~~~~~~ 500 (759)
++++ +++ .|||++||+||||||||+|||++||+|+|++||++ +|+++|++||++||++.. . +.
T Consensus 432 ~~~~----~~~------~l~g~~af~LyDTyGfP~dlt~~ia~e~g~~vd~~~~F~~~m~~q~~~a~~~~~-----~-~~ 495 (739)
T 2ztg_A 432 RLVE----RKK------KLEKDDLIELYDSHGIPVELAVGIAAEKGAEVEMPKDIYAELAKRHSKAEKVQE-----K-KI 495 (739)
T ss_dssp HHHH----HHS------BCCHHHHHHHHHHHCCCHHHHHHHHHHTTCBCCCCTTHHHHHHHTTSBCCCCCC-----C-CC
T ss_pred HHHH----Hhc------CCCHHHHHHHHHhcCCCHHHHHHHHHHcCCeeCCcccHHHHHHHHHHHHhhccc-----c-ch
Confidence 9998 442 29999999999999999999999999999999998 899999999998876421 1 10
Q ss_pred hHHhhhCCCCccccccc---cccceEEEEEEeCCeeeeeecCCCeEEEEecCcceecCCCCCCCCeEEEEeCCCcccccc
Q 004366 501 ADLAEKIPDTEFLGYDT---LSAKAIVESLLVNGKPVIKVSKGSDVEVLLNRTPFYAESGGQIGDYGFLYVTQGTNQQTA 577 (759)
Q Consensus 501 ~~l~~~~~~T~f~gY~~---~~~~akVl~i~~~~~~v~~~~~g~~~~VvLD~T~FYpEgGGQ~~D~G~I~~~~~~~~~~~ 577 (759)
.+....++|+|+||++ .+++|+|+++.. .+||||+|||||||||||+|+|+|..++.
T Consensus 496 -~~~~~~~~T~~l~Y~~~y~~~~~a~Vl~i~~-------------~~VVLD~TpFYpEgGGQ~~D~G~I~~~g~------ 555 (739)
T 2ztg_A 496 -TLQNEYPATEKLYYDDPTLLEFEAEVIGVEG-------------DFVILNRSAFYPESGGQDNDVGYLIANGG------ 555 (739)
T ss_dssp -CCSSCCCCCEECTTTCTTCCEEEEEEEEEET-------------TEEEESEECCCCSBTTBCCCCEEEEETTE------
T ss_pred -hhhccCCCceeecccCCcccEEEEEEEEEEc-------------CEEEEeCCCCCCCCCCCCCCEEEEEECCE------
Confidence 1222256899999999 689999999974 26999999999999999999999987665
Q ss_pred eEEEEEEEEeCCCEEEEEEEeecccc-CCCCEEEEEEccccchHHHHhccHHHHHHHHHHhHhCCcceeeeeeccCCcEE
Q 004366 578 VVEVKDVKKSLGSVFVHKGTIREGVL-EVGREVEAIVDPKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLR 656 (759)
Q Consensus 578 ~~~V~dV~k~~~g~ivH~~~~~~g~l-~~G~~V~~~VD~~rR~~~mr~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~~R 656 (759)
.+.|.+|++. +|.++|.+. +.+ ++|++|.++|||+||+.+|++|||+|||++||+++||.+++|+||+++++++|
T Consensus 556 ~~~V~dv~k~-~g~ivH~~~---~~~~~~Gd~V~~~VD~~rR~~~m~~HTAtHLL~~ALr~vlG~~v~q~GS~v~~d~~r 631 (739)
T 2ztg_A 556 KFEVVDVLEA-DGVVLHVVK---GAKPEVGTKVKGVIDSDVRWRHMRHHSATHVLLYSLQKVLGNHVWQAGARKEFSKAR 631 (739)
T ss_dssp EEEECEEEEE-TTEEEEECC---SSCCCTTCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCEEECCSCCSSCE
T ss_pred EEEEEEEEEE-CCEEEEEEc---ccCCCCCCEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEecCcEEcCCcEE
Confidence 7999999998 899999986 445 69999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEcCHHHHHHhchhhhc--CCCCCCcEEEEEECCccccccccCCccc
Q 004366 657 FDFNFHRPLLDTELEEIERLINGWIGDANLLQTKVMALDDAKRAGAIAMF--GEKYGEQVKISSKMYVLWRFLVCLWNFV 734 (759)
Q Consensus 657 ~DF~~~~~lt~eel~~IE~~vNeiI~~~~pV~~~~~~~eEA~~~~~~~lf--~eky~~~VRVV~Ig~~~~d~~~CgGTHV 734 (759)
|||++++++|++++++||+.||++|++|+||++.+++++||++.+++++| +++|++.||||+||+ +.++||||||
T Consensus 632 ~DF~~~~~lT~edL~~IE~~vNeiI~~nlpV~~~~~s~eEA~~~~~l~L~~~~~~~~d~VRVV~IGd---~~elCGGTHV 708 (739)
T 2ztg_A 632 LDVTHFRRPSEEEIKEIEMLANREILANKPIKWEWMDRIEAERKFGFRLYQGGVPPGRKIRVVQVGD---DVQACGGTHC 708 (739)
T ss_dssp EEEECSSCCCHHHHHHHHHHHHHHHHTTCBEEEEEEEHHHHHHHHCGGGGTTCCCCSSEEEEEEETT---EEEECCSCCC
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCHHHHHHhCCHhhhcCCCCCCCeEEEEEECC---eeeCcCCcCc
Confidence 99999889999999999999999999999999999999999999888888 678889999999998 7999999999
Q ss_pred ----ccCcEEEEeeecCCCCce
Q 004366 735 ----VEPMLTILLKSEPSKSFL 752 (759)
Q Consensus 735 ----eIG~IkIl~~~~~gk~~~ 752 (759)
+||.|+|++.+..++|.+
T Consensus 709 ~nTgeIg~fkIls~s~i~~Gvr 730 (739)
T 2ztg_A 709 RSTGEIGMLKILKVESIQDGVI 730 (739)
T ss_dssp SBGGGGCCEEEEEEEEEETTEE
T ss_pred ccHhHcCcEEEEEEeEEcCCEE
Confidence 899999999998888864
No 3
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A
Probab=100.00 E-value=1.2e-175 Score=1432.75 Aligned_cols=451 Identities=46% Similarity=0.847 Sum_probs=419.5
Q ss_pred CChHHHHHHHHHHHhhCCCeeecCccCcC-CCCccceeccccccccccccccCCCCCCCcccccCccc--C--CCccccC
Q 004366 48 SSGDSIRKRFLDFYASRGHKVLPSASLVP-EDPTVLLTIAGMLQFKPIFLGKVPRQVPRAATSQRCIR--T--NDVENVG 122 (759)
Q Consensus 48 ~~~~eiR~~Fl~fF~~~gH~~v~s~slvp-~d~tllf~nAGm~~fk~~f~g~~~p~~~r~~~~QkCiR--~--nDldnVG 122 (759)
||++|||++||+||++|||++|||||||| +|||||||||||+||||||+|.++||++|+|+|||||| + |||||||
T Consensus 3 ~~~~eiR~~Fl~FF~~kgH~~vpSsslvp~~DptLLftnAGM~~FKp~flG~~~p~~~r~t~sQkCiRag~~hNDlenVG 82 (465)
T 1yfs_A 3 LSAHEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRPYKRATSCQKCLRVSGKHNDLEQVG 82 (465)
T ss_dssp CCHHHHHHHHHHHHHTTTCEECCCCCSSCTTCTTCSSCCSTTSTTHHHHHTSSCCSCSEEEEEEEEECEETTEECGGGBT
T ss_pred CCHHHHHHHHHHHHHhCCCEEecCCCcccCCCCCcceeccchhhhhHHhcCCCCCCCCceeccccccccCCCcccHhhcC
Confidence 89999999999999999999999999999 89999999999999999999999999999999999999 4 4999999
Q ss_pred CCCCcccccccccCCccCcccHHHHHHHHHHhhhcccCCCCCceEEEEeCChHHHHHHHHHhcCCCCCceeccCCCCCcc
Q 004366 123 RTSRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFW 202 (759)
Q Consensus 123 ~t~rH~TfFEMlGn~SfgdYfK~eai~~awefLt~~l~l~~~rl~vTv~~~D~e~~~iW~~~~g~~~~~I~~~~~~dNfW 202 (759)
+|+|||||||||||||||||||+|||+|||||||++|||||+|||||||++|+||++||++.+|||++||+++|.+||||
T Consensus 83 ~t~rHhTfFEMLGNfSFGDYFK~eAI~~AwE~LT~~lgl~~~rL~vTv~~~D~Ea~~iW~~~~G~p~~rI~~~g~~dNFW 162 (465)
T 1yfs_A 83 YTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVLKLPKEKLYVSVYKDDEEAYRIWNEHIGIPSERIWRLGEEDNFW 162 (465)
T ss_dssp TBSSCCSEEEEEEEEESSSCCHHHHHHHHHHHHHHTSCCCGGGEEEEEETTCHHHHHHHHTTTCCCGGGEEEECHHHHEE
T ss_pred CCCCccchheeccccchhhhhHHHHHHHHHHHHHhhcCCCHHHeEEEEeCCCHHHHHHHHHhcCCCHHHeeeCCCcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCceEEEEecCCCCCCCCCCCCCCCceEEEeeeecccccccCCCccccCccCcccccchHHHHHHHHhCCCC
Q 004366 203 NSGATGPCGPCSEIYYDFHPDRGCSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERIARILQKVPN 282 (759)
Q Consensus 203 ~~G~~GpcGPcsEI~~d~g~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~~~~Lp~k~IDTGmGlERl~~vlqg~~s 282 (759)
+||++||||||||||||+|++++. |+|||||||||||||||+++|+|.|||+||||||||||||||||||++|
T Consensus 163 ~mG~tGPCGPCsEI~yD~g~~~~~-------~~r~lEIWNlVFmQy~r~~~g~l~pLp~k~IDTGmGLERla~vlQg~~s 235 (465)
T 1yfs_A 163 QMGDVGPCGPSSEIYVDRGEEYEG-------DERYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGLERIASVLQGKNS 235 (465)
T ss_dssp ESSSSEEEEEEEEEEEECCTTSCH-------HHHEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEHHHHHHHHTTCSS
T ss_pred cCCCCcCCCCCeEEEEccCCCCCC-------CCCEEEeeeeeeeEEEecCCCccccCCCCceecCcCHHHHHHHHcCCCc
Confidence 999999999999999999988762 7899999999999999999999999999999999999999999999999
Q ss_pred cccccccHHHHHHHHHHhCCCccCCccccccceEEeehhhhhHHhhhhCCCccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 004366 283 NYETDLIFPIIKKASELANVSYAQSNDRTNLNLKIIGDHLRAIVYLLSDGVFPSNIGRGYVVRRLIRRAVRTGRLLGIKG 362 (759)
Q Consensus 283 ~ydtd~F~~li~~i~~~~~~~y~~~~~~~~~~~rviaDH~R~~~~~i~DG~~Psn~grGYvlRrilRRa~r~~~~lg~~~ 362 (759)
|||||+|.|||++|++++|++|+.+. ..++++||||||+||++|||+||++|||+|||||||||||||+|+|++||++.
T Consensus 236 nYdtDlf~pii~~i~~~~g~~Y~~~~-~~d~s~rvIADH~R~~~f~I~DGv~PsN~GrGYVLRRilRRavr~g~~Lg~~~ 314 (465)
T 1yfs_A 236 NFEIDIIFPLIQFGEEVSGKKYGEKF-ETDVALRVIADHLRAITFAISDGVIPSNEGRGYVIRRILRRAMRFGYKLGIEN 314 (465)
T ss_dssp GGGSTTTHHHHHHHHHHHCCCTTSCH-HHHHHHHHHHHHHHHHHHHHHTTCCCCSBHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred cchhhhHHHHHHHHHHHhCCCCCCCc-ccceeEEEEcchhhhhhhhhccccccCCCCcchHHHHHHHHHHHHHHHhCCCc
Confidence 99999999999999999999997543 56889999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccccchHHHHHHHHHHhccCChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCh
Q 004366 363 DGRGNLEGAFLPSIAEKAIELSTHIDSDVKAREQRILEELKREELRFVQTLERGEKLLDQMLADALSRTRESGSVPRLSG 442 (759)
Q Consensus 363 ~~~~~~~~~~l~~lv~~v~~~m~~~yPeL~~~~~~I~~ii~~EE~~F~~tL~~G~~~l~~~i~~~~~~~~~~g~~~~l~g 442 (759)
| ||++||+.|++.|++.||||.++++.|++||+.||++|.+||++|+++|+++++ +++++|+ ++|||
T Consensus 315 ~--------fl~~Lv~~v~~~m~~~yPel~~~~~~I~~vi~~EE~~F~~TL~~G~~~l~~~~~----~~~~~~~-~~l~G 381 (465)
T 1yfs_A 315 P--------FLYKGVDLVVDIMKEPYPELELSREFVKGIVKGEEKRFIKTLKAGMEYIQEVIQ----KALEEGR-KTLSG 381 (465)
T ss_dssp C--------CHHHHHHHHHHHHTTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHTTC-CEECH
T ss_pred h--------hHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhcCC-CcCCH
Confidence 9 999999999999999999999999999999999999999999999999999998 6654453 46999
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHcCCeeChhhHHHHHHHHHHHHHHhhcccccccC-ChhHHhhhCCCCccccccccc
Q 004366 443 QDAFLLYDTFGFPVEITKEVAEEHGVSVDMKGFDIEMENQRRQSQAAHNAVKLSVD-DSADLAEKIPDTEFLGYDTLS 519 (759)
Q Consensus 443 ~~af~LydTyGfP~dlt~~ia~e~g~~vd~~~F~~~~~~~r~~sr~~~~~~~~~~~-~~~~l~~~~~~T~f~gY~~~~ 519 (759)
++||+||||||||+|||++||+|+|++||+++|+++|++||++||++++....... +...+.+...+|+|+||+.++
T Consensus 382 ~~af~LyDTyGfP~dLt~eia~e~g~~vD~~gF~~~m~~q~~rar~~~~~~~~~~~~~~~~ll~~~~~seF~GY~~~~ 459 (465)
T 1yfs_A 382 KEVFTAYDTYGFPVDLIDEIAREKGLGIDLEGFQCELEEQRERARKHFKVEAKKVKPVYSHLKELGKTSAFVGAAALE 459 (465)
T ss_dssp HHHHHHHHTSCCCHHHHHHHHHTTTCEECHHHHHHHHHHHHHTTTTC---------CCCCCTTCHHHHTTSBCGGGC-
T ss_pred HHHHhhhhccCCCHHHHHHHHHHcCCeeCHHHHHHHHHHHHHHHHhhhhcCccchhHHHHHHhhccCCceeecchhhh
Confidence 99999999999999999999999999999999999999999999987654321111 112222223468999998654
No 4
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A*
Probab=100.00 E-value=9.5e-173 Score=1402.29 Aligned_cols=422 Identities=51% Similarity=0.915 Sum_probs=407.0
Q ss_pred CChHHHHHHHHHHHhhCCCeeecCccCcC-CCCccceeccccccccccccccCCCCCCCcccccCcccC----CCccccC
Q 004366 48 SSGDSIRKRFLDFYASRGHKVLPSASLVP-EDPTVLLTIAGMLQFKPIFLGKVPRQVPRAATSQRCIRT----NDVENVG 122 (759)
Q Consensus 48 ~~~~eiR~~Fl~fF~~~gH~~v~s~slvp-~d~tllf~nAGm~~fk~~f~g~~~p~~~r~~~~QkCiR~----nDldnVG 122 (759)
+|++|||++||+||++|||++|||||||| +|||||||||||+||||||+|.++||++|+||||||||+ |||||||
T Consensus 2 ~~~~eiR~~Fl~FF~~kgH~~v~Ssslvp~~DptLLftnAGM~~FKp~flG~~~p~~~r~~~sQkCiR~gGKHnDlenVG 81 (441)
T 3hy0_A 2 KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRATTSQRCVRAGGKHNDLENVG 81 (441)
T ss_dssp CCHHHHHHHHHHHHHHTTCEECCCCCSSCSSCTTCSSCCSGGGGGHHHHHTSSCCSCSEEEEEEEEECEETTEECGGGBT
T ss_pred CCHHHHHHHHHHHHHhCCCeEcCCCCccCCCCCCceeecccchhhhhhhcCCCCCCCCCccccccceecCCCCCCHHhhC
Confidence 68999999999999999999999999999 799999999999999999999999999999999999999 9999999
Q ss_pred CCCCcccccccccCCccCcccHHHHHHHHHHhhh--cccCCCCCceEEEEeCChHHHHHHHHHhcCCCCCceeccC----
Q 004366 123 RTSRHHTFFEMLGNFSFGDYFKKEAIQWAWEFST--VEFGLPANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMG---- 196 (759)
Q Consensus 123 ~t~rH~TfFEMlGn~SfgdYfK~eai~~awefLt--~~l~l~~~rl~vTv~~~D~e~~~iW~~~~g~~~~~I~~~~---- 196 (759)
+|+|||||||||||||||||||+|||+||||||| ++|||||+|||||||++|+||++||++.+|||++||+++|
T Consensus 82 ~t~rHhTfFEMLGNfSFGDYFK~eAI~~Awe~LT~~~~lgl~~erL~vTvf~~D~Ea~~iW~~~~Gvp~~rI~~~g~~~~ 161 (441)
T 3hy0_A 82 YTARHHTFFEMLGNFSFGDYFKLDAILFAWLLLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKG 161 (441)
T ss_dssp TBSSCCSEEEEEEEEESSSCCHHHHHHHHHHHHHCTTTTCCCGGGEEEEEETTCHHHHHHHHHTTCCCGGGEEEECSTTS
T ss_pred CCCccccceeeccccccchhhHHHHHHHHHHHhCCCCccCCCHHHeEEEEeCCCHHHHHHHHHccCCCHHHeeecCcccc
Confidence 9999999999999999999999999999999999 6699999999999999999999999999999999999999
Q ss_pred ---CCCCccCCCCCCCCCCceEEEEecCCCCCCCCC--CCCCCCceEEEeeeecccccccCCCccccCccCcccccchHH
Q 004366 197 ---ADDNFWNSGATGPCGPCSEIYYDFHPDRGCSDV--DLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLE 271 (759)
Q Consensus 197 ---~~dNfW~~G~~GpcGPcsEI~~d~g~~~~~~~~--~~~~~~r~lEiwNlVFmq~~~~~~g~~~~Lp~k~IDTGmGlE 271 (759)
.+||||+||+|||||||||||||+|++++++.. +.+||+|||||||||||||||+++|+|.|||+||||||||||
T Consensus 162 ~~y~~dNFW~mG~tGPCGPCsEI~yD~g~~~~~g~~~~~~~d~~r~lEIWNlVFmQy~r~~~g~l~pLp~k~IDTGmGLE 241 (441)
T 3hy0_A 162 APYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTAMGLE 241 (441)
T ss_dssp BTTBBTTEEESSSSEEEEEEEEEEEECCTTSCCCCTTSTTTTSSSEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEHH
T ss_pred ccccccCchhcCCCcCCcCCeeEEEecCcccCCCCCCCCCCCCCCeEEEeeeeeeeeeecCCCccccCCCCceecCCCHH
Confidence 899999999999999999999999998864332 348899999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCcccccccHHHHHHHHHHhCCCccCCccccccceEEeehhhhhHHhhhhCCCccCCCCCchHHHHHHHHH
Q 004366 272 RIARILQKVPNNYETDLIFPIIKKASELANVSYAQSNDRTNLNLKIIGDHLRAIVYLLSDGVFPSNIGRGYVVRRLIRRA 351 (759)
Q Consensus 272 Rl~~vlqg~~s~ydtd~F~~li~~i~~~~~~~y~~~~~~~~~~~rviaDH~R~~~~~i~DG~~Psn~grGYvlRrilRRa 351 (759)
||||||||++||||||+|.|||++|++++|++| ..++++||||||+||++|||+||++|||+|||||||||||||
T Consensus 242 Rla~vlQg~~snYdtDlf~pii~~i~~~~g~~~-----~~~~s~rvIADH~R~~~f~iaDGv~PsNeGrGYVLRRilRRA 316 (441)
T 3hy0_A 242 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD-----LSNKSLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRA 316 (441)
T ss_dssp HHHHHHTTCSSGGGSHHHHHHHHHHHHHHTCCC-----TTCHHHHHHHHHHHHHHHHHHTTCCCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCccccchhHHHHHHHHHHHhCCCc-----cccceeEEecchHHHHHHHHhcCcccCCCCcchhHHHHHHHH
Confidence 999999999999999999999999999999986 347899999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCCCccccchHHHHHHHHHHhccCChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004366 352 VRTGRLLGIKGDGRGNLEGAFLPSIAEKAIELSTHIDSDVKAREQRILEELKREELRFVQTLERGEKLLDQMLADALSRT 431 (759)
Q Consensus 352 ~r~~~~lg~~~~~~~~~~~~~l~~lv~~v~~~m~~~yPeL~~~~~~I~~ii~~EE~~F~~tL~~G~~~l~~~i~~~~~~~ 431 (759)
+|++++||++.| ||++||+.|++.|++.||||.++++.|++||+.||++|.+||++|+++|+++++ ++
T Consensus 317 vr~g~~Lg~~~~--------fl~~Lv~~v~~~m~~~yPeL~~~~~~I~~vi~~EE~~F~~TL~~G~~~l~~~~~----~~ 384 (441)
T 3hy0_A 317 VRHGNMLGAKET--------FFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELA----KL 384 (441)
T ss_dssp HHHHHHHTCCSC--------CGGGGHHHHHHHHGGGGHHHHHTHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH----SC
T ss_pred HHHHHHhCCCCc--------cHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----Hh
Confidence 999999999999 999999999999999999999999999999999999999999999999999998 54
Q ss_pred hcCCCCCCCChHHHHHHhhcCCCChhhHHHHHHHcCCeeChhhHHHHHHHHHHHHHHhh
Q 004366 432 RESGSVPRLSGQDAFLLYDTFGFPVEITKEVAEEHGVSVDMKGFDIEMENQRRQSQAAH 490 (759)
Q Consensus 432 ~~~g~~~~l~g~~af~LydTyGfP~dlt~~ia~e~g~~vd~~~F~~~~~~~r~~sr~~~ 490 (759)
+ + +.|||++||+||||||||+|||++||+|+|++||+++|+++|++||++||++.
T Consensus 385 ~--~--~~l~g~~af~LyDTyGfP~dLt~eia~e~g~~vD~~~F~~~m~~qr~rar~~~ 439 (441)
T 3hy0_A 385 S--G--DTLDGETAFRLYDTYGFPVDLTADVCRERNIKVDEAGFEAAMEEQRRRAREAS 439 (441)
T ss_dssp C--S--SEECHHHHHHHHHHHCCCHHHHHHHHHTTTCEECHHHHHHHHHHHHHHHHHHH
T ss_pred c--C--CCCCHHHHHhhhhcCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHHhcC
Confidence 3 2 47999999999999999999999999999999999999999999999999864
No 5
>3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase, protein structure initiative; 2.00A {Clostridium perfringens}
Probab=100.00 E-value=2.7e-51 Score=425.77 Aligned_cols=215 Identities=19% Similarity=0.194 Sum_probs=195.9
Q ss_pred C-cccccccc---ccceEEEEEEeCCeeeeeecCCCeEEEEecCcceecCCCCCCCCeEEEEeCCCcccccceEEEEEEE
Q 004366 510 T-EFLGYDTL---SAKAIVESLLVNGKPVIKVSKGSDVEVLLNRTPFYAESGGQIGDYGFLYVTQGTNQQTAVVEVKDVK 585 (759)
Q Consensus 510 T-~f~gY~~~---~~~akVl~i~~~~~~v~~~~~g~~~~VvLD~T~FYpEgGGQ~~D~G~I~~~~~~~~~~~~~~V~dV~ 585 (759)
| +.+||+++ +++|+|+++..+ ++.++|+||+|||||||||||+|+|+|. .+.|.+|+
T Consensus 2 T~~~ly~~d~y~~~~~a~V~~~~~~---------~~~~~vvLd~T~FYpegGGQ~~D~G~i~----------~~~V~~v~ 62 (241)
T 3kew_A 2 SLTKLYYEDQYIKEFKGEIIEVKEI---------DGKFHVLLDQTAFFPGGGGQMGDLGLID----------GIKVLDVY 62 (241)
T ss_dssp -CEEGGGTCTTCCEEEECEEEEEEE---------TTEEEEEESEECCCCCBTTBCCCCEEET----------TEEEEEEE
T ss_pred cchhhhhhCcccceeEEEEEEEEec---------CCeEEEEEeCCcccCCCCCCCCCEEEEe----------eEEEEEEE
Confidence 5 77899885 789999999864 3458899999999999999999999994 47999999
Q ss_pred EeCCCEEEEEEEeeccccCCCCEEEEEEccccchHHHHhccHHHHHHHHHHhHhCCcceeeeeeccCCcEEEEEecCCCC
Q 004366 586 KSLGSVFVHKGTIREGVLEVGREVEAIVDPKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPL 665 (759)
Q Consensus 586 k~~~g~ivH~~~~~~g~l~~G~~V~~~VD~~rR~~~mr~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~~R~DF~~~~~l 665 (759)
+. +|.++|++. +++++|++|.++|||+||+++|++|||+|||++||+++||.+ |+|+++.++++||||+ +++
T Consensus 63 ~~-~g~i~H~~~---~~l~~g~~V~~~vD~~rR~~~~~~HTa~HLL~~al~~~~g~~--~~G~~v~~~~~r~Df~--~~l 134 (241)
T 3kew_A 63 EE-EGKVYHVLE---KEPKKLKNLQCELDWERRFDGMQQHLGQHLLSGCFYDLFGAN--TCGFHLGKEISTVDIV--GFL 134 (241)
T ss_dssp EE-TTEEEEEES---SCCCCCSSEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCC--EEEEEECSSCEEEEEE--SCC
T ss_pred Ee-CCEEEEEEC---CcCCCCCEEEEEECHHHhhhHHHHHHHHHHHHHHHHHHCCCC--eEeccccCCeEEEEEC--CCC
Confidence 98 899999986 678999999999999999999999999999999999999986 6999999999999999 689
Q ss_pred CHHHHHHHHHHHHHHHhcCCCEEEEEcCHHHHHHhchhhhcCCCCCCcEEEEEECCccccccccCCccc----ccCcEEE
Q 004366 666 LDTELEEIERLINGWIGDANLLQTKVMALDDAKRAGAIAMFGEKYGEQVKISSKMYVLWRFLVCLWNFV----VEPMLTI 741 (759)
Q Consensus 666 t~eel~~IE~~vNeiI~~~~pV~~~~~~~eEA~~~~~~~lf~eky~~~VRVV~Ig~~~~d~~~CgGTHV----eIG~IkI 741 (759)
|++++++||+.||++|++|+||++.+++++||++.+++++ +++|++.||||+||+ +|.++|||||| +||.|||
T Consensus 135 t~e~l~~IE~~vn~~I~~~~pV~~~~~~~~eA~~~~~~~~-~e~~~~~VRvv~ig~--~~~~~CgGtHV~~TgeIg~fkI 211 (241)
T 3kew_A 135 DEKTIREAEKEANRLIFENLEVKSYAPSKKELKKVKTRRA-LPKTDEEIRIVEIVG--LDLNACCGVHPRNTRDLQVIKI 211 (241)
T ss_dssp CHHHHHHHHHHHHHHHHHTCBEEEECCCTTTTTTCCCSSC-CCCCSSCCCEEEETT--TEEEECCSCCCSBSGGGCCEEE
T ss_pred CHHHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHhcChhhc-CCccCCcEEEEEECC--eEEEcCCCCCcCCHhhcCCEEE
Confidence 9999999999999999999999999999999999887775 788999999999998 89999999999 8999999
Q ss_pred EeeecCCCCceeeee
Q 004366 742 LLKSEPSKSFLSRVL 756 (759)
Q Consensus 742 l~~~~~gk~~~~~~~ 756 (759)
++.+.. +|. +|+.
T Consensus 212 ~~~~~~-~~~-~RI~ 224 (241)
T 3kew_A 212 RRWEKH-KNA-TRIE 224 (241)
T ss_dssp EEEEEE-TTE-EEEE
T ss_pred EEEecc-CCc-EEEE
Confidence 999864 454 3764
No 6
>2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase; zinc-binding motif, trans-editing enzyme, structural genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP: b.43.3.6 d.67.1.2
Probab=100.00 E-value=9.1e-48 Score=393.36 Aligned_cols=198 Identities=26% Similarity=0.284 Sum_probs=179.5
Q ss_pred CCcccccccc---ccceEEEEEEeCCeeeeeecCCCeEEEEecCcceecCCCCCCCCeEEEEeCCCcccccceEEEEEEE
Q 004366 509 DTEFLGYDTL---SAKAIVESLLVNGKPVIKVSKGSDVEVLLNRTPFYAESGGQIGDYGFLYVTQGTNQQTAVVEVKDVK 585 (759)
Q Consensus 509 ~T~f~gY~~~---~~~akVl~i~~~~~~v~~~~~g~~~~VvLD~T~FYpEgGGQ~~D~G~I~~~~~~~~~~~~~~V~dV~ 585 (759)
+|+.+||+++ +++|+|+++. + + +|+||+|||||||||||+|+|+|. .++|.+|+
T Consensus 4 ~t~~ly~~d~y~~~~~a~V~~~~-~---------~---~vvld~T~Fype~GGQ~~D~G~i~----------~~~V~~v~ 60 (216)
T 2e1b_A 4 MTRKLYYEDAYLKEAKGRVLEIR-D---------N---AILLDQTIFYPTGGGQPHDRGTIN----------GVEVLDVY 60 (216)
T ss_dssp SCCCSTTSCTTCCEEEECBCCCC-S---------S---CCCBSCCCSCCCCTTCCCCCEEET----------TEEEEEEE
T ss_pred hhHHHHhhCcccceeeEEEEEEe-C---------C---EEEEeCCCccCCCCCCCCCEEEEc----------cEEEEEEE
Confidence 5788999884 6789999983 1 1 699999999999999999999994 27899999
Q ss_pred EeCCCEEEEEEEeeccccCCCCEEEEEEccccchHHHHhccHHHHHHHHHHhHhCCc-ceeeeeeccCCcEEEEEecCCC
Q 004366 586 KSLGSVFVHKGTIREGVLEVGREVEAIVDPKLRQRAKVHHTATHLLQAALKKVIGQE-TSQAGSLVAFDRLRFDFNFHRP 664 (759)
Q Consensus 586 k~~~g~ivH~~~~~~g~l~~G~~V~~~VD~~rR~~~mr~HTAtHLL~aALr~vlG~~-v~q~Gs~v~~d~~R~DF~~~~~ 664 (759)
+..+|.++|++.. .+.+++|++|.++|||+||+.+|++|||+|||++||+++||.+ +.+.|+++.++++||||+++++
T Consensus 61 ~~~~~~i~H~~~~-~~~l~~g~~v~~~vD~~rR~~~~~~HTA~HlL~~Al~~~~g~~~~~~~g~~v~~~~~r~Df~~~~~ 139 (216)
T 2e1b_A 61 KDEEGNVWHVVKE-PEKFKVGDEVELKIDWDYRYKLMRIHTGLHLLEHVLNEVLGEGNWQLVGSGMSVEKGRYDIAYPEN 139 (216)
T ss_dssp CCTTCCCEEEESC-GGGCCSSSCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCEEEECCBCSSEEEEEEECSSC
T ss_pred ECcCCEEEEEEcc-CCCcCCCCEEEEEECHHHHHHHHHHhHHHHHHHHHHHHHcCCccceeeeeeEcCCcEEEEEeCCCC
Confidence 8657899999975 4689999999999999999999999999999999999999974 4678999999999999999888
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCEEEEEcCHHHHHHhchhhhcCCCCCCcEEEEEECCccccccccCCccc----ccCcEE
Q 004366 665 LLDTELEEIERLINGWIGDANLLQTKVMALDDAKRAGAIAMFGEKYGEQVKISSKMYVLWRFLVCLWNFV----VEPMLT 740 (759)
Q Consensus 665 lt~eel~~IE~~vNeiI~~~~pV~~~~~~~eEA~~~~~~~lf~eky~~~VRVV~Ig~~~~d~~~CgGTHV----eIG~Ik 740 (759)
++++ +++||+.||++|++|+||++.++++ ||||+||+ +|.++|||||| +||.||
T Consensus 140 lt~e-l~~IE~~vn~~I~~~~pv~~~~~~~-------------------vRvv~ig~--~~~~~CgGtHV~~TgeIg~fk 197 (216)
T 2e1b_A 140 LNKY-KEQIISLFNKYVDEGGEVKIWWEGD-------------------RRYTQIRD--FEVIPCGGTHVKDIKEIGHIK 197 (216)
T ss_dssp GGGG-HHHHHHHHHHHHHHCCBEEEEESSS-------------------CEEEEETT--SCEECCCSCCCSBGGGTCCEE
T ss_pred CCHH-HHHHHHHHHHHHhcCCCEEEEEcCC-------------------EEEEEECC--EEEECCCCCCcccHhhCceEE
Confidence 9987 9999999999999999999998875 89999998 89999999999 899999
Q ss_pred EEeeecCCCCce
Q 004366 741 ILLKSEPSKSFL 752 (759)
Q Consensus 741 Il~~~~~gk~~~ 752 (759)
|++.+.+++|.+
T Consensus 198 I~~~~~~~~g~r 209 (216)
T 2e1b_A 198 KLKRSSIGRGKQ 209 (216)
T ss_dssp EEEEEEEETTEE
T ss_pred EEEEeEEcCCEE
Confidence 999999998873
No 7
>1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural genomics/proteomics initiative RSGI, structural genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2 PDB: 1wxo_A 1v7o_A 1wnu_A 3rhu_A 3rfn_A
Probab=99.89 E-value=6.7e-23 Score=198.88 Aligned_cols=134 Identities=20% Similarity=0.195 Sum_probs=109.4
Q ss_pred HHHHhccHHHHHHHHHHhHhCCcceeeee-eccCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEcCHHHHH
Q 004366 620 RAKVHHTATHLLQAALKKVIGQETSQAGS-LVAFDRLRFDFNFHRPLLDTELEEIERLINGWIGDANLLQTKVMALDDAK 698 (759)
Q Consensus 620 ~~mr~HTAtHLL~aALr~vlG~~v~q~Gs-~v~~d~~R~DF~~~~~lt~eel~~IE~~vNeiI~~~~pV~~~~~~~eEA~ 698 (759)
..|++|||+|||++|++++||.++.++++ .+.++..++||+...++|++++.+||+.||++|++|+||+..+++++||.
T Consensus 4 ~~~~~HSa~HlL~~Al~~~~~~~~~~~~~~~i~~~~~~~~~d~~~~~t~e~l~~IE~~~n~~I~~~~pi~~~~~~~~eA~ 83 (157)
T 1v4p_A 4 IEVRTHSALHVVKGAVVKVLGSEAKWTYSTYVKGNKGVLIVKFDRKPSDEEIREIERLANEKVKENAPIKIYELPREEAE 83 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCGGGCCEEEEEEETTEEEEEEECSSCCCHHHHHHHHHHHHHHHHHTCBCEEEEEEHHHHH
T ss_pred hHHHhHHHHHHHHHHHHHHhCCCcEEecCceecCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCHHHHH
Confidence 57999999999999999999965666665 66666777888766789999999999999999999999999999999999
Q ss_pred HhchhhhcCC-CCC---CcEEEEEECCccccccccCCccc----ccCcEEEEeeecCCCCceeee
Q 004366 699 RAGAIAMFGE-KYG---EQVKISSKMYVLWRFLVCLWNFV----VEPMLTILLKSEPSKSFLSRV 755 (759)
Q Consensus 699 ~~~~~~lf~e-ky~---~~VRVV~Ig~~~~d~~~CgGTHV----eIG~IkIl~~~~~gk~~~~~~ 755 (759)
++....++.. .++ +.||||+||+ +|.++|||||| +||.|+|++.+...+.-+.||
T Consensus 84 ~~f~~~~~~~~~~~~~~~~vrv~~ig~--~~~~~C~GtHv~~Tg~I~~fki~~~~~~~~~~~l~v 146 (157)
T 1v4p_A 84 KMFGEDMYDLFPVPEDVRILKVVVIED--WNVNACNKEHTKTTGEIGPIKIRKVRFRKSKGLLEI 146 (157)
T ss_dssp HHHGGGGSCSSCCCTTCCEEEEEEETT--TEEEECCSCCCSBGGGTCCEEEEEEEEETTTTEEEE
T ss_pred HhhCccccccccCCCCCCeEEEEEECC--eeEeCCCCCccCChhhcceEEEEEEEecCCCcEEEE
Confidence 8754444431 122 4799999998 88999999999 899999998875333333343
No 8
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Probab=99.88 E-value=2.4e-22 Score=206.15 Aligned_cols=159 Identities=16% Similarity=0.261 Sum_probs=131.2
Q ss_pred CCEEEEEEEeeccccCCCCEEEEEEccccch-HHHHhccHHHHHHHHHHhHhCC-cceeeeeeccCCcEEEEEecCCCCC
Q 004366 589 GSVFVHKGTIREGVLEVGREVEAIVDPKLRQ-RAKVHHTATHLLQAALKKVIGQ-ETSQAGSLVAFDRLRFDFNFHRPLL 666 (759)
Q Consensus 589 ~g~ivH~~~~~~g~l~~G~~V~~~VD~~rR~-~~mr~HTAtHLL~aALr~vlG~-~v~q~Gs~v~~d~~R~DF~~~~~lt 666 (759)
+|.+++. ...|..|+.|+ -|+++.+. ..|++|||+|||++|++++||. ++.+ | +..++++|+||++..++|
T Consensus 41 Ng~l~dL----~~~l~~~~~ve-~it~~~~~g~~~~~HS~~HlL~~A~~~~~~~~~~~~-g-~~~~~g~y~d~~~~~~~t 113 (224)
T 1tke_A 41 NGELVDA----CDLIENDAQLS-IITAKDEEGLEIIRHSCAHLLGHAIKQLWPHTKMAI-G-PVIDNGFYYDVDLDRTLT 113 (224)
T ss_dssp TTEEEET----TCCBCSCEEEE-EECTTSHHHHHHHHHHHHHHHHHHHHHHSTTCEECC-C-CEETTEEEEEEECSSCCC
T ss_pred CCEEecc----ceEcCCCCeEE-EEecCchhHHHHHHHHHHHHHHHHHHHHCCCcEEEE-C-CccCCeEEEEEeCCCCCC
Confidence 6777763 24677888887 47887764 7899999999999999999974 4332 4 445889999999888999
Q ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEcCHHHHHHhch-------hhhcCC-C-CCCcEEEEEECCccccccccCCccc---
Q 004366 667 DTELEEIERLINGWIGDANLLQTKVMALDDAKRAGA-------IAMFGE-K-YGEQVKISSKMYVLWRFLVCLWNFV--- 734 (759)
Q Consensus 667 ~eel~~IE~~vNeiI~~~~pV~~~~~~~eEA~~~~~-------~~lf~e-k-y~~~VRVV~Ig~~~~d~~~CgGTHV--- 734 (759)
++++++||++||++|++|+||+..+++++||.+++. .+++.+ . +.+.||||++|+ + .++|+||||
T Consensus 114 ~edl~~IE~~m~~iI~~~~pi~~~~~~~~eA~~~f~~~~~~~k~~l~~~~~~~~~~v~vy~~g~--~-~dlC~G~Hv~~T 190 (224)
T 1tke_A 114 QEDVEALEKRMHELAEKNYDVIKKKVSWHEARETFANRGESYKVSILDENIAHDDKPGLYFHEE--Y-VDMCRGPHVPNM 190 (224)
T ss_dssp HHHHHHHHHHHHHHHTTCCBCEEEECCHHHHHHHHHHTTCHHHHHHHHHHSCTTCCCEEEEETT--E-EEEESCCCCSBG
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEecHHHHHHHHHHcCCchHHHHhccccCCCCeeEEEEeCC--E-EEECCCcCCCcC
Confidence 999999999999999999999999999999998643 345543 3 567899999998 4 689999999
Q ss_pred -ccCcEEEEeeec------CCCCceeeeec
Q 004366 735 -VEPMLTILLKSE------PSKSFLSRVLH 757 (759)
Q Consensus 735 -eIG~IkIl~~~~------~gk~~~~~~~~ 757 (759)
+||.|+|++.+. ....+|.|||-
T Consensus 191 g~i~~fkl~~~~~~yw~g~~~~~~lqRiyg 220 (224)
T 1tke_A 191 RFCHHFKLMKTAGAYWRGDSNNKMLQRIYG 220 (224)
T ss_dssp GGCCCEEEEEEEEEEGGGCTTSCEEEEEEE
T ss_pred cccceEEEEEecceeEcCCCCCceeEEEEE
Confidence 899999999862 34678999985
No 9
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=99.78 E-value=2.5e-19 Score=209.64 Aligned_cols=161 Identities=18% Similarity=0.303 Sum_probs=129.1
Q ss_pred CCEEEEEEEeeccccCCCCEEEEEEccccchHHHHhccHHHHHHHHHHhHhCCcceeeeeeccCCcEEEEEecCCCCCHH
Q 004366 589 GSVFVHKGTIREGVLEVGREVEAIVDPKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLDT 668 (759)
Q Consensus 589 ~g~ivH~~~~~~g~l~~G~~V~~~VD~~rR~~~mr~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~~R~DF~~~~~lt~e 668 (759)
+|.+++. ..++..+..|...-..+..-..+++|||+|||++|++++||.+..+.|+.+ ++++|+||++..++|++
T Consensus 43 ng~~~dl----~~~l~~d~~v~~~~~~~~~g~~~~~HSa~HlL~~A~~~~~~~~~~~~g~~~-~~g~~~Df~~~~~~t~e 117 (645)
T 1nyr_A 43 NGQLVDL----TKPLETDGSIEIVTPGSEEALEVLRHSTAHLMAHAIKRLYGNVKFGVGPVI-EGGFYYDFDIDQNISSD 117 (645)
T ss_dssp TTEEECT----TSCCCSCBCCCEECTTSHHHHHHHHHHHHHHHHHHHHHHSSSCEECCCCEE-TTEEEEEEECSSCCCST
T ss_pred CCEEEeC----CcccCCCCeEEEeeccchhHHHHHHHHHHHHHHHHHHHHcCCcEEEECCcc-CCceEEEecCCCCCCHH
Confidence 5665542 235666666666444555668999999999999999999998778999988 89999999998899999
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEEcCHHHHHHhch-----hhhcCCCC-CCcEEEEEECCccccccccCCccc----ccCc
Q 004366 669 ELEEIERLINGWIGDANLLQTKVMALDDAKRAGA-----IAMFGEKY-GEQVKISSKMYVLWRFLVCLWNFV----VEPM 738 (759)
Q Consensus 669 el~~IE~~vNeiI~~~~pV~~~~~~~eEA~~~~~-----~~lf~eky-~~~VRVV~Ig~~~~d~~~CgGTHV----eIG~ 738 (759)
++.+||+.||++|++|+||+..+++++||.+... ..++.... ++.||||+||+ + .++|+|||| +||.
T Consensus 118 dl~~IE~~m~~iI~~~~pi~~~~~~~~eA~~~f~~~~yk~~li~~~~~~~~vrv~~~g~--~-~dlC~G~Hv~~Tg~i~~ 194 (645)
T 1nyr_A 118 DFEQIEKTMKQIVNENMKIERKVVSRDEAKELFSNDEYKLELIDAIPEDENVTLYSQGD--F-TDLCRGVHVPSTAKIKE 194 (645)
T ss_dssp THHHHHHHHHHHHHTTCCEEEEECTTTHHHHHCSSCHHHHHHHCCCSSSCCCEEEEETT--E-EEECCSCCCSCGGGCCE
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEecHHHHHHHHhhCcchHHHhhcCCCCCeeEEEEECC--E-EEecCCcccCCCCCCce
Confidence 9999999999999999999999999999987632 12222111 15799999998 5 789999999 8999
Q ss_pred EEEEeee------cCCCCceeeeec
Q 004366 739 LTILLKS------EPSKSFLSRVLH 757 (759)
Q Consensus 739 IkIl~~~------~~gk~~~~~~~~ 757 (759)
|+|++.+ .....+|.|++.
T Consensus 195 fkl~~~~~a~~~~~~~~~~l~ri~g 219 (645)
T 1nyr_A 195 FKLLSTAGAYWRGDSNNKMLQRIYG 219 (645)
T ss_dssp EEEEEEEEEETTSCSSSCEEEEEEE
T ss_pred EEEeeeCchHHHHHhHHHHHHHHHH
Confidence 9999986 233457888875
No 10
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=99.77 E-value=1.3e-18 Score=203.48 Aligned_cols=160 Identities=14% Similarity=0.246 Sum_probs=126.9
Q ss_pred CCEEEEEEEeeccccCCCCEEEEEEccc-cchHHHHhccHHHHHHHHHHhHhCCcceeeeeeccCCcEEEEEecCCCCCH
Q 004366 589 GSVFVHKGTIREGVLEVGREVEAIVDPK-LRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLD 667 (759)
Q Consensus 589 ~g~ivH~~~~~~g~l~~G~~V~~~VD~~-rR~~~mr~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~~R~DF~~~~~lt~ 667 (759)
+|.+++.- .++..+..|. -|+++ .+-..+++|||+|||++|++++||..-.+.|+.+. +++|+||++..++|+
T Consensus 41 ng~~~dl~----~~l~~d~~~~-~~~~~~~~~~~~~~HSa~HlL~~Al~~~~~~~~~~~G~~i~-~gfy~Df~~~~~~t~ 114 (642)
T 1qf6_A 41 NGELVDAC----DLIENDAQLS-IITAKDEEGLEIIRHSCAHLLGHAIKQLWPHTKMAIGPVID-NGFYYDVDLDRTLTQ 114 (642)
T ss_dssp TTEEEETT----SCBCSCEECC-EECTTSHHHHHHHHHHHHHHHHHHHHHHCTTCEECCCCEET-TEEEEEEECSSCCCH
T ss_pred CCEEeccc----cccCCCceEE-EeecCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEECCccC-CeeEEEEeCCCCCCH
Confidence 67766532 3455555555 45555 56688999999999999999999752237899886 789999999889999
Q ss_pred HHHHHHHHHHHHHHhcCCCEEEEEcCHHHHHHhchh-------hhc-CCCCC-CcEEEEEECCccccccccCCccc----
Q 004366 668 TELEEIERLINGWIGDANLLQTKVMALDDAKRAGAI-------AMF-GEKYG-EQVKISSKMYVLWRFLVCLWNFV---- 734 (759)
Q Consensus 668 eel~~IE~~vNeiI~~~~pV~~~~~~~eEA~~~~~~-------~lf-~eky~-~~VRVV~Ig~~~~d~~~CgGTHV---- 734 (759)
+++.+||+.||++|++|+||+..+++++||.+.+.. .++ ++.+. +.||||++|+ | .++|+||||
T Consensus 115 edl~~IE~~m~~iI~~~~~v~~~~~~~~eA~~~~~~~~e~yk~~li~~~~~~~~~v~vy~~g~--~-~dlC~GpHv~~Tg 191 (642)
T 1qf6_A 115 EDVEALEKRMHELAEKNYDVIKKKVSWHEARETFANRGESYKVSILDENIAHDDKPGLYFHEE--Y-VDMCRGPHVPNMR 191 (642)
T ss_dssp HHHHHHHHHHHHHHHHTCBEEEEECCHHHHHHHHHHHTCHHHHHHHHHHSCTTCCCEEEEETT--E-EECCSSCCCSBGG
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEecHHHHHHHhhhhCCcchhhhhhcccCCCCceEEEEECC--E-EEecCCCccCCCC
Confidence 999999999999999999999999999999987432 222 22222 4799999998 5 689999999
Q ss_pred ccCcEEEEeeec---CC---CCceeeeec
Q 004366 735 VEPMLTILLKSE---PS---KSFLSRVLH 757 (759)
Q Consensus 735 eIG~IkIl~~~~---~g---k~~~~~~~~ 757 (759)
+||.|||++.+. .| ..+|.|++.
T Consensus 192 ~I~~fkl~~~~~~yw~g~~~~~~l~r~~g 220 (642)
T 1qf6_A 192 FCHHFKLMKTAGAYWRGDSNNKMLQRIYG 220 (642)
T ss_dssp GCCSEEEEEEEEEEGGGCTTSCEEEEEEE
T ss_pred cceeEEEeeeccccccCccCCceeEeeec
Confidence 899999999864 44 457888874
No 11
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A*
Probab=92.83 E-value=0.18 Score=53.37 Aligned_cols=102 Identities=17% Similarity=0.147 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHhhCCCeeecCccCcCC-CCccceec-----cccccc----cccccccCCC----------CCCCccccc
Q 004366 51 DSIRKRFLDFYASRGHKVLPSASLVPE-DPTVLLTI-----AGMLQF----KPIFLGKVPR----------QVPRAATSQ 110 (759)
Q Consensus 51 ~eiR~~Fl~fF~~~gH~~v~s~slvp~-d~tllf~n-----AGm~~f----k~~f~g~~~p----------~~~r~~~~Q 110 (759)
+.|.+.+-+||.++|...|..--+.+. | ++-.. |=|.++ ++++|-. .| +..|+-..-
T Consensus 19 s~i~~~ir~~f~~~GF~EVeTP~l~~~~~--~~~~~~~~e~a~~f~~~~~~~~~~L~~-Spe~~~~~l~~~g~~rvf~ig 95 (294)
T 1nnh_A 19 TKILEYMTDFFVKEGFKWLLPVIISPITD--PLWPDPAGEGMEPAEVEIYGVKMRLTH-SMILHKQLAIAMGLKKIFVLS 95 (294)
T ss_dssp HHHHHHHHHHHHHTTCEEECCCCEESCCC--CCCSCTTCCCCCCCEEEETTEEEEECS-CSHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEEccc--hhccCCCCCcceeEEEEcCCCCEEecc-ChHHHHHHHhhcCccceEEEE
Confidence 467778889999999988864333332 1 11110 111111 1222311 11 356788889
Q ss_pred CcccCCCccccCCCCCcccccccccC-CccCcccHHHHHHHHHHhhhccc
Q 004366 111 RCIRTNDVENVGRTSRHHTFFEMLGN-FSFGDYFKKEAIQWAWEFSTVEF 159 (759)
Q Consensus 111 kCiR~nDldnVG~t~rH~TfFEMlGn-~SfgdYfK~eai~~awefLt~~l 159 (759)
+|.|.-+-. . .|+||..=|.|++- .+|.|| .|.+..+.+|+...+
T Consensus 96 ~~FR~E~pq-~-~~~RH~~EFtqle~e~~~~~~--~~l~~~~e~l~~~l~ 141 (294)
T 1nnh_A 96 PNIRLESRQ-K-DDGRHAYEFTQLDFEVERAKM--EDIMRLIERLVYGLF 141 (294)
T ss_dssp EEECCCCGG-G-CSSSCCSEEEEEEEEEETCCH--HHHHHHHHHHHHHHH
T ss_pred ccEeCCCCC-C-CCCccccceeEEEEEecCCCH--HHHHHHHHHHHHHHH
Confidence 999985410 1 25799988888875 444463 688888888876553
No 12
>3rf1_A Glycyl-tRNA synthetase alpha subunit; glycyl-tRNA synthetase subunit alpha, alpha/beta protein, ST genomics; 2.20A {Campylobacter jejuni} PDB: 3rgl_A* 3ufg_A*
Probab=92.72 E-value=0.31 Score=50.60 Aligned_cols=174 Identities=23% Similarity=0.303 Sum_probs=103.2
Q ss_pred CCCChHHHHHHHHHHHhhCCCeeecCccCcCCCCccceecccccccccc-ccccCCCCCCCcccccCcccCCCc---ccc
Q 004366 46 FPSSGDSIRKRFLDFYASRGHKVLPSASLVPEDPTVLLTIAGMLQFKPI-FLGKVPRQVPRAATSQRCIRTNDV---ENV 121 (759)
Q Consensus 46 ~~~~~~eiR~~Fl~fF~~~gH~~v~s~slvp~d~tllf~nAGm~~fk~~-f~g~~~p~~~r~~~~QkCiR~nDl---dnV 121 (759)
++||-.+|-.+--+|..++|..++.++.+= +.| -.|-|. |+..--|..=+++-+|+|-|=.|= +|=
T Consensus 23 ~~~~fQ~iIl~Lq~fWa~qGC~i~QPyD~E--------vGA--GT~hPaTfLRalGpePw~~AYVqPsRRP~DGRYGeNP 92 (311)
T 3rf1_A 23 NAMTFSQMILNLQNYWQEQGCAIMQPYDMP--------AGA--GTFHPATFLRSLGKKPWAAAYVAPSRRPTDGRYGENP 92 (311)
T ss_dssp GSCCHHHHHHHHHHHHHTTTCEECCCCSSC--------CSS--GGGSHHHHTTTSSSSCEEEEEEEEEECGGGCCTTCCS
T ss_pred CcCcHHHHHHHHHHHHHHCCCEEECCcccc--------ccC--CCCCHHHHHHhcCCCcceeeeeccCCCCCCCCcCCCc
Confidence 368999999999999999999999877653 233 367774 554444544578999999998652 233
Q ss_pred CCCCCcccccccccCCccCcccHHHHHHHHHHhhhcccCCCCCceEEEEeCChHHHHHHHHHhcCCCCCceeccCCCCCc
Q 004366 122 GRTSRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNF 201 (759)
Q Consensus 122 G~t~rH~TfFEMlGn~SfgdYfK~eai~~awefLt~~l~l~~~rl~vTv~~~D~e~~~iW~~~~g~~~~~I~~~~~~dNf 201 (759)
.+= .||.=|..+=-=|-.+ ..+.=.+-| +.|||||.. |=+|| -+||
T Consensus 93 NRL-q~yyQfQVilKPsP~n-----iQeLYL~SL-~alGId~~~-------------------------HDIRF-VEDn- 138 (311)
T 3rf1_A 93 NRL-GAYYQFQVLIKPSPDN-----IQELYLKSL-ENLGFDLKS-------------------------HDIRF-VEDN- 138 (311)
T ss_dssp SCC-SEEEEEEEEEESCCTT-----HHHHHHHHH-HHTTCCGGG-------------------------SCEEE-EECC-
T ss_pred hhh-hhheeeEEEEcCCCcc-----HHHHHHHHH-HHhCCCccc-------------------------cCeeE-eccC-
Confidence 322 3444444433333333 011111111 245666552 33454 2555
Q ss_pred cCCCCC-CCCCCceEEEEecCCCCCCCCCCCCCCCceEEEeeeecccccccCCCccccCccCcccccchHHHHHHHHhCC
Q 004366 202 WNSGAT-GPCGPCSEIYYDFHPDRGCSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERIARILQKV 280 (759)
Q Consensus 202 W~~G~~-GpcGPcsEI~~d~g~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~~~~Lp~k~IDTGmGlERl~~vlqg~ 280 (759)
|+ -|| |--|-==|+--| .+||=- |+=|.+ -.| .++..-.+.-=+||||||+.|||+
T Consensus 139 WE-sPTLGAWGLGWEVWld-----------------GMEVTQ--FTYFQQ-vGG--i~c~pv~~EITYGLERlamylQ~v 195 (311)
T 3rf1_A 139 WE-SPSLGAWGLGWEVWLD-----------------GMEVTQ--FTYFQQ-VGG--IAVDLVSAEITYGLERIAMYLQNV 195 (311)
T ss_dssp EE-ETTTTEEEEEEEEEET-----------------TEEEEE--EEEEEE-ETT--EECSSCCEEEEEEHHHHHHHHTTC
T ss_pred CC-CCcccccccceEEEEc-----------------CeeEee--eeeeee-eCC--ccccccceeeehhHHHHHHHHhCC
Confidence 54 222 544544455543 255542 333333 333 234556677789999999999999
Q ss_pred CCcccc
Q 004366 281 PNNYET 286 (759)
Q Consensus 281 ~s~ydt 286 (759)
.|+||.
T Consensus 196 d~vyDl 201 (311)
T 3rf1_A 196 DNVYDI 201 (311)
T ss_dssp SSGGGS
T ss_pred Ceeeec
Confidence 999986
No 13
>1j5w_A Glycyl-tRNA synthetase alpha chain; structural genomics, TM0216, JCSG, PSI, protein structure initiative; 1.95A {Thermotoga maritima} SCOP: d.104.1.1
Probab=92.36 E-value=0.36 Score=49.87 Aligned_cols=173 Identities=27% Similarity=0.343 Sum_probs=102.7
Q ss_pred CCChHHHHHHHHHHHhhCCCeeecCccCcCCCCccceecccccccccc-ccccCCCCCCCcccccCcccCCCc---cccC
Q 004366 47 PSSGDSIRKRFLDFYASRGHKVLPSASLVPEDPTVLLTIAGMLQFKPI-FLGKVPRQVPRAATSQRCIRTNDV---ENVG 122 (759)
Q Consensus 47 ~~~~~eiR~~Fl~fF~~~gH~~v~s~slvp~d~tllf~nAGm~~fk~~-f~g~~~p~~~r~~~~QkCiR~nDl---dnVG 122 (759)
.|--.+|--+--+|..++|..++-++.+= +.| -.|-|. |+..--|..=+++-+|+|.|=.|= +|=.
T Consensus 12 ~~~fQ~iIl~Lq~fWa~~GC~i~QpyD~E--------vGA--GT~~PaTfLRaLGpepw~~AYVqPsRRP~DGRYGeNPN 81 (298)
T 1j5w_A 12 HMYLQDVIMKLNDFWASKGCLLEQPYDME--------VGA--GTFHPATFFGSLRKGPWKVAYVQPSRRPTDGRYGENPN 81 (298)
T ss_dssp -CCHHHHHHHHHHHHHHTTCEECCCCSSC--------CSS--GGGSHHHHTGGGCSSCEEEEEEEEEECCC-----CCTT
T ss_pred hHHHHHHHHHHHHHHHHCCCEEEcCcccc--------ccc--ccCCHHHHHHhcCCCcceeeeeccCCCCCCCCcCCCch
Confidence 46678899999999999999999877653 233 366773 343333433468999999998662 2333
Q ss_pred CCCCcccccccccCCccCcccHHHHHHHHHHhhhcccCCCCCceEEEEeCChHHHHHHHHHhcCCCCCceeccCCCCCcc
Q 004366 123 RTSRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFW 202 (759)
Q Consensus 123 ~t~rH~TfFEMlGn~SfgdYfK~eai~~awefLt~~l~l~~~rl~vTv~~~D~e~~~iW~~~~g~~~~~I~~~~~~dNfW 202 (759)
+= .||.=|..+=-=|-.+- .+.=.+- .+.|||||.. |=+|| -+|| |
T Consensus 82 RL-q~y~QfQVilKPsP~ni-----QeLYL~S-L~alGid~~~-------------------------HDIRF-VEDn-W 127 (298)
T 1j5w_A 82 RL-QRYFQYQVIIKPSPENS-----QELYLES-LEYLGINLKE-------------------------HDIRF-VEDN-W 127 (298)
T ss_dssp CC-SEEEEEEEEEESCCSSH-----HHHHHHH-HHHTTCCTTT-------------------------SCEEE-EEEC-C
T ss_pred hh-hhheeeEEEECCCCccH-----HHHHHHH-HHHhCCCccc-------------------------CCcee-eccC-C
Confidence 32 34444555444444430 1111111 1246666653 23454 2555 5
Q ss_pred CCCCC-CCCCCceEEEEecCCCCCCCCCCCCCCCceEEEeeeecccccccCCCccccCccCcccccchHHHHHHHHhCCC
Q 004366 203 NSGAT-GPCGPCSEIYYDFHPDRGCSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERIARILQKVP 281 (759)
Q Consensus 203 ~~G~~-GpcGPcsEI~~d~g~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~~~~Lp~k~IDTGmGlERl~~vlqg~~ 281 (759)
+ -|| |.-|===|+--| .+||=- |+=|.+ ..| .++..-.+.-=+||||||+.|||+.
T Consensus 128 E-sPTLGAwGLGWEVWld-----------------GMEITQ--FTYFQQ-vGG--i~c~pv~~EITYGLERiamylQ~vd 184 (298)
T 1j5w_A 128 E-SPTLGAWGVGWEVWLD-----------------GMEITQ--FTYFQQ-IGG--ISLKDIPLEITYGLERIAMYLQGVD 184 (298)
T ss_dssp E-EGGGTEEEEEEEEEET-----------------TEEEEE--EEEEEE-BTT--BCCSSCCEEEEEEHHHHHHHHHTCS
T ss_pred C-CCccccccccceeeEc-----------------ceeeeh--hhhhhh-cCC--cccCccceeecccHHHHHHHHhCCC
Confidence 4 222 555555566653 266653 333333 333 3355566777899999999999999
Q ss_pred Ccccc
Q 004366 282 NNYET 286 (759)
Q Consensus 282 s~ydt 286 (759)
|+||.
T Consensus 185 ~vydl 189 (298)
T 1j5w_A 185 NVYEV 189 (298)
T ss_dssp SGGGC
T ss_pred ceecc
Confidence 99996
No 14
>4dh4_A MIF; trimer, isomerase; 1.82A {Toxoplasma gondii}
Probab=61.80 E-value=4.1 Score=36.35 Aligned_cols=30 Identities=13% Similarity=0.182 Sum_probs=25.7
Q ss_pred cHHHHHHHHHHhhhcccCCCCCceEEEEeC
Q 004366 143 FKKEAIQWAWEFSTVEFGLPANRLWISVYE 172 (759)
Q Consensus 143 fK~eai~~awefLt~~l~l~~~rl~vTv~~ 172 (759)
=|++-++-..++|.++||++|+|+||.+++
T Consensus 72 ~~~~l~~~i~~~l~~~Lgi~~~riyI~f~d 101 (114)
T 4dh4_A 72 TNCKIAAALSAACERHLGVPKNRIYTTFTN 101 (114)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCcCcccEEEEEEe
Confidence 467777888899999999999999998763
No 15
>3fwu_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.80A {Leishmania major}
Probab=56.44 E-value=6.7 Score=36.35 Aligned_cols=32 Identities=19% Similarity=0.254 Sum_probs=25.8
Q ss_pred CcccHHHHHHHHHHhhhcccCCCCCceEEEEe
Q 004366 140 GDYFKKEAIQWAWEFSTVEFGLPANRLWISVY 171 (759)
Q Consensus 140 gdYfK~eai~~awefLt~~l~l~~~rl~vTv~ 171 (759)
+.=-|++-.+-.-++|.+.||++++|+||.++
T Consensus 90 ~~e~n~~~s~~i~~~l~~~LgI~~~riyI~f~ 121 (133)
T 3fwu_A 90 GPSEPEKVTSIVTAAITKECGIVADRIFVLYF 121 (133)
T ss_dssp CTTHHHHHHHHHHHHHHHHHCCCGGGEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHhCcChhhEEEEEE
Confidence 33346666777779999999999999999875
No 16
>3b64_A Macrophage migration inhibitory factor-like protein; cytokine, MIF, LM1740MIF, lmmif, unknown function; 1.03A {Leishmania major}
Probab=56.32 E-value=7 Score=34.60 Aligned_cols=31 Identities=16% Similarity=0.201 Sum_probs=26.5
Q ss_pred ccHHHHHHHHHHhhhcccCCCCCceEEEEeC
Q 004366 142 YFKKEAIQWAWEFSTVEFGLPANRLWISVYE 172 (759)
Q Consensus 142 YfK~eai~~awefLt~~l~l~~~rl~vTv~~ 172 (759)
=-|++-++-..++|.+.||++|+|+||++.+
T Consensus 71 eqk~~l~~~i~~~l~~~lgi~~~~v~I~~~e 101 (112)
T 3b64_A 71 SEPEKVTSIVTAAITKECGIVADRIFVLYFS 101 (112)
T ss_dssp THHHHHHHHHHHHHHHHHCCCGGGEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHhCcCcceEEEEEEE
Confidence 3577788888899999999999999998863
No 17
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A
Probab=55.12 E-value=63 Score=33.63 Aligned_cols=107 Identities=12% Similarity=0.104 Sum_probs=61.2
Q ss_pred hHHHHHHHHHHHhhCCCeeecCccCcCC---CCccceecccccccc-----cccccc---------------CCCCCCCc
Q 004366 50 GDSIRKRFLDFYASRGHKVLPSASLVPE---DPTVLLTIAGMLQFK-----PIFLGK---------------VPRQVPRA 106 (759)
Q Consensus 50 ~~eiR~~Fl~fF~~~gH~~v~s~slvp~---d~tllf~nAGm~~fk-----~~f~g~---------------~~p~~~r~ 106 (759)
...+.+...++|.+.|...+-..++.+. +.+..+....|..+. .+.+-. ...+--|+
T Consensus 73 ~~~l~~~ir~~~~~~Gf~EV~tP~Le~~~l~~~~g~~~~~~m~~~~npl~e~~~LRp~l~p~l~~~~r~~~~~~~~Plrl 152 (288)
T 3dsq_A 73 LLELEEKLAKALHQQGFVQVVTPTIITKSALAKMTIGEDHPLFSQVFWLDGKKCLRPMLAPNLYTLWRELERLWDKPIRI 152 (288)
T ss_dssp HHHHHHHHHHHHHTTTCEECCCCSEEEHHHHHTTSSCC--CCTTTSCEEETTEEECSCSHHHHHHHHHHHTTTSCSCEEE
T ss_pred HHHHHHHHHHHHHHCCCEEEECCeeecHHHHhhcCCCcccccEEeecccccchhhhhcChHHHHHHHHHHHhCCCCCEEE
Confidence 5788899999999999999999888862 111111110233222 112210 01111256
Q ss_pred ccccCcccCCCccccCCCCCcccccccccCCccCc---ccHHHHHHHHHHhhhcccCCC
Q 004366 107 ATSQRCIRTNDVENVGRTSRHHTFFEMLGNFSFGD---YFKKEAIQWAWEFSTVEFGLP 162 (759)
Q Consensus 107 ~~~QkCiR~nDldnVG~t~rH~TfFEMlGn~Sfgd---YfK~eai~~awefLt~~l~l~ 162 (759)
....+|.|.... | ..|.--|.|++-+.+|. .-=.|.+..+.++|. .||++
T Consensus 153 feiG~vFR~E~~---~--~~r~~EF~qle~~i~g~~~~~~f~elkg~le~ll~-~LGl~ 205 (288)
T 3dsq_A 153 FEIGTCYRKESQ---G--AQHLNEFTMLNLTELGTPLEERHQRLEDMARWVLE-AAGIR 205 (288)
T ss_dssp EEEEEEECSCCS---S--SCCCSEEEEEEEEEETCCGGGHHHHHHHHHHHHHH-HHTCC
T ss_pred EEEeeEEecCCC---C--CCcCccEEEEEEEEEcCCchhhHHHHHHHHHHHHH-HcCCC
Confidence 777888886332 2 23545788999888884 112355666666654 45774
No 18
>3djh_A Macrophage migration inhibitory factor; homotrimer, cytokine, inflammatory response, isomerase, phosphoprotein; 1.25A {Homo sapiens} SCOP: d.80.1.3 PDB: 1ca7_A* 1ljt_A* 2ooh_A* 2ooz_A* 3b9s_A* 2oow_A* 3ce4_A 3dji_A* 3ijg_A* 3ijj_A* 3smb_A* 3smc_A* 3u18_A* 4f2k_A* 1gd0_A* 1gcz_A* 3jsf_A* 3jsg_A* 3jtu_A* 3l5p_A* ...
Probab=53.81 E-value=7.7 Score=34.64 Aligned_cols=30 Identities=10% Similarity=0.285 Sum_probs=24.2
Q ss_pred cHHHHHHHHHHhhhcccCCCCCceEEEEeC
Q 004366 143 FKKEAIQWAWEFSTVEFGLPANRLWISVYE 172 (759)
Q Consensus 143 fK~eai~~awefLt~~l~l~~~rl~vTv~~ 172 (759)
-|++-.+---++|.+.||+|++|+||.++.
T Consensus 71 ~n~~~s~~i~~~l~~~Lgi~~~riyI~f~d 100 (114)
T 3djh_A 71 QNRSYSKLLCGLLAERLRISPDRVYINYYD 100 (114)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCcCcceEEEEEEE
Confidence 355556666789999999999999998763
No 19
>3kan_A D-dopachrome tautomerase; immune response, cytokine, cytokine-inhibitor C; HET: RW1; 1.13A {Homo sapiens} SCOP: d.80.1.3 PDB: 1dpt_A* 3ker_A*
Probab=52.45 E-value=8.2 Score=34.79 Aligned_cols=29 Identities=24% Similarity=0.421 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhhhcccCCCCCceEEEEeC
Q 004366 144 KKEAIQWAWEFSTVEFGLPANRLWISVYE 172 (759)
Q Consensus 144 K~eai~~awefLt~~l~l~~~rl~vTv~~ 172 (759)
+++-.+--.++|.+.||+|++|+||.++.
T Consensus 73 n~~~s~~i~~~l~~~Lgi~~~RiyI~f~d 101 (117)
T 3kan_A 73 NRSHSAHFFEFLTKELALGQDRILIRFFP 101 (117)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCcCcCeEEEEEEE
Confidence 45555666788999999999999998763
No 20
>2wkb_A Macrophage migration inhibitory factor; cytokine; HET: CME; 1.78A {Plasmodium berghei} PDB: 3gad_A 3gac_A 2wkf_A*
Probab=51.46 E-value=9.1 Score=34.67 Aligned_cols=32 Identities=6% Similarity=0.011 Sum_probs=27.0
Q ss_pred ccHHHHHHHHHHhhhcccCCCCCceEEEEeCC
Q 004366 142 YFKKEAIQWAWEFSTVEFGLPANRLWISVYED 173 (759)
Q Consensus 142 YfK~eai~~awefLt~~l~l~~~rl~vTv~~~ 173 (759)
=-|++-++-..++|.+.||++|+++||++.+-
T Consensus 71 eqk~~l~~~i~~~l~~~lgi~~~~v~I~~~e~ 102 (125)
T 2wkb_A 71 SNNSLLADKITKILSNHLSVKPRRVYIEFRDC 102 (125)
T ss_dssp CTHHHHHHHHHHHHHHHHCCCGGGEEEEEEC-
T ss_pred HHHHHHHHHHHHHHHHHhCcCcceEEEEEEEC
Confidence 35788888888999999999999999988643
No 21
>3fwt_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.90A {Leishmania major}
Probab=50.25 E-value=8.2 Score=35.73 Aligned_cols=29 Identities=28% Similarity=0.326 Sum_probs=23.9
Q ss_pred cHHHHHHHHHHhhhcccCCCCCceEEEEe
Q 004366 143 FKKEAIQWAWEFSTVEFGLPANRLWISVY 171 (759)
Q Consensus 143 fK~eai~~awefLt~~l~l~~~rl~vTv~ 171 (759)
-|++-.+-.-++|.+.||++|+|+||.++
T Consensus 93 ~n~~~s~~i~~~l~~~LgI~~~rvyI~f~ 121 (133)
T 3fwt_A 93 KPKMMTPRIAAAITKECGIPAERIYVFYY 121 (133)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCcChhhEEEEEE
Confidence 45666666778999999999999999775
No 22
>3t5s_A Gilaa.00834.A, macrophage migration inhibitory factor; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Giardia lamblia}
Probab=49.72 E-value=8.7 Score=35.66 Aligned_cols=30 Identities=20% Similarity=0.163 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhhhcccCCCCCceEEEEeCC
Q 004366 144 KKEAIQWAWEFSTVEFGLPANRLWISVYED 173 (759)
Q Consensus 144 K~eai~~awefLt~~l~l~~~rl~vTv~~~ 173 (759)
|++-.+-.-++|.+.||+||+|+||.++.-
T Consensus 94 n~~~s~~i~~~l~~~Lgi~~~riyI~f~d~ 123 (135)
T 3t5s_A 94 NPSISAAITGCLTQHFKVKPERVYISFNEA 123 (135)
T ss_dssp CHHHHHHHHHHHHHHHCCCGGGEEEEEEC-
T ss_pred CchHHHHHHHHHHHhcccCccEEEEEeccc
Confidence 556666677899999999999999988643
No 23
>1hfo_A Migration inhibitory factor; tautomerase; 1.65A {Trichinella spiralis} SCOP: d.80.1.3
Probab=48.81 E-value=8.7 Score=33.90 Aligned_cols=29 Identities=17% Similarity=0.486 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhhhcccCCCCCceEEEEeC
Q 004366 144 KKEAIQWAWEFSTVEFGLPANRLWISVYE 172 (759)
Q Consensus 144 K~eai~~awefLt~~l~l~~~rl~vTv~~ 172 (759)
|++-++-..++|.+.||++|+|+||++.+
T Consensus 72 k~~l~~~i~~~l~~~lgi~~~~v~I~~~e 100 (113)
T 1hfo_A 72 NRDHSAKLFDHLNTKLGIPKNRMYIHFVN 100 (113)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCcCcCeEEEEEEE
Confidence 67778888899999999999999998864
No 24
>2xcz_A Possible ATLS1-like light-inducible protein; cytokine, tautomerase, immune system, cyanobacterium; 1.64A {Prochlorococcus marinus}
Probab=48.79 E-value=8.7 Score=34.08 Aligned_cols=30 Identities=20% Similarity=0.409 Sum_probs=26.0
Q ss_pred cHHHHHHHHHHhhhcccCCCCCceEEEEeC
Q 004366 143 FKKEAIQWAWEFSTVEFGLPANRLWISVYE 172 (759)
Q Consensus 143 fK~eai~~awefLt~~l~l~~~rl~vTv~~ 172 (759)
=|++-++-..++|.+.||++|+|+||.+.+
T Consensus 72 qk~~l~~~i~~~l~~~lgi~~~~v~I~~~e 101 (115)
T 2xcz_A 72 RTQEVSELVCGHIEQNLGIPADRIYIGFED 101 (115)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCcCcccEEEEEEE
Confidence 377788888899999999999999998864
No 25
>1uiz_A MIF, macrophage migration inhibitory factor; cytokine, tautomerase; 2.50A {Xenopus laevis} SCOP: d.80.1.3
Probab=46.86 E-value=9.7 Score=33.75 Aligned_cols=29 Identities=28% Similarity=0.552 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhhhcccCCCCCceEEEEeC
Q 004366 144 KKEAIQWAWEFSTVEFGLPANRLWISVYE 172 (759)
Q Consensus 144 K~eai~~awefLt~~l~l~~~rl~vTv~~ 172 (759)
|++-++-..++|.+.||++|+|+||++.+
T Consensus 73 k~~l~~~i~~~l~~~lgi~~~~v~I~~~e 101 (115)
T 1uiz_A 73 NKSYTKLLCDILTKQLNIPANRVYINYYD 101 (115)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCcCcceEEEEEEE
Confidence 67778888899999999999999998864
No 26
>2os5_A Acemif; macrophage migration inhibitory factor, cytokine, nematode,; 1.60A {Ancylostoma ceylanicum} PDB: 3rf4_A* 3rf5_A*
Probab=46.33 E-value=10 Score=34.00 Aligned_cols=29 Identities=17% Similarity=0.319 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhhhcccCCCCCceEEEEeC
Q 004366 144 KKEAIQWAWEFSTVEFGLPANRLWISVYE 172 (759)
Q Consensus 144 K~eai~~awefLt~~l~l~~~rl~vTv~~ 172 (759)
|++-++-..++|.+.||++|+|+||.+.+
T Consensus 73 k~~l~~~i~~~l~~~lgi~~~~v~I~~~e 101 (119)
T 2os5_A 73 NIRHTQKITQFCQDTLKLPKDKVIITYFD 101 (119)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCcCcccEEEEEEE
Confidence 67778888899999999999999998864
No 27
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=44.60 E-value=18 Score=40.75 Aligned_cols=95 Identities=20% Similarity=0.320 Sum_probs=57.4
Q ss_pred HHHHHHHHHHhhCCCeeecCccCcCC--CC--ccceeccccccc-cccccccCC---------CCCCCcccccCcccCCC
Q 004366 52 SIRKRFLDFYASRGHKVLPSASLVPE--DP--TVLLTIAGMLQF-KPIFLGKVP---------RQVPRAATSQRCIRTND 117 (759)
Q Consensus 52 eiR~~Fl~fF~~~gH~~v~s~slvp~--d~--tllf~nAGm~~f-k~~f~g~~~---------p~~~r~~~~QkCiR~nD 117 (759)
.|-+.+-+||.++|...|..--+.+. +. ..+-+.. | ++++|-+.+ ....|+-..-+|.|.-+
T Consensus 183 ~i~~~ir~~~~~~gF~EV~TPil~~~~~~~ga~~f~~~~----~~~~~~L~~Spql~~k~l~~~g~~rvy~ig~~FR~E~ 258 (487)
T 1eov_A 183 GVCELFREYLATKKFTEVHTPKLLGAPSEGGSSVFEVTY----FKGKAYLAQSPQFNKQQLIVADFERVYEIGPVFRAEN 258 (487)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESSCSSSSSCCCEEEE----TTEEEEECSCTHHHHHHHHHTTCCEEEEEEEEECCCC
T ss_pred HHHHHHHHHHHhCCcEEEeCCEEEEecCCCCcccceecc----CCccEEcccChHHHHHHHHhcCCCceEEEeccEecCC
Confidence 34455678999999888865444441 11 1111111 1 123332111 12467778889999955
Q ss_pred ccccCCCCCcccccccccC-CccC-cccHHHHHHHHHHhhh
Q 004366 118 VENVGRTSRHHTFFEMLGN-FSFG-DYFKKEAIQWAWEFST 156 (759)
Q Consensus 118 ldnVG~t~rH~TfFEMlGn-~Sfg-dYfK~eai~~awefLt 156 (759)
. .|+||..=|-||.- .||| || +|.++.+-+++.
T Consensus 259 ~----~~~Rh~pEFt~le~e~af~~~~--~dlm~l~E~ll~ 293 (487)
T 1eov_A 259 S----NTHRHMTEFTGLDMEMAFEEHY--HEVLDTLSELFV 293 (487)
T ss_dssp C----CCTTCCSEEEEEEEEEECSSCT--HHHHHHHHHHHH
T ss_pred C----CCCccchhhhhhhhhhhhhcCH--HHHHHHHHHHHH
Confidence 3 37899989999997 6898 57 566666655544
No 28
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=40.64 E-value=15 Score=28.29 Aligned_cols=29 Identities=10% Similarity=0.088 Sum_probs=24.3
Q ss_pred cHHHHHHHHHHhhhcccCCCCCceEEEEe
Q 004366 143 FKKEAIQWAWEFSTVEFGLPANRLWISVY 171 (759)
Q Consensus 143 fK~eai~~awefLt~~l~l~~~rl~vTv~ 171 (759)
-|++-++-..+.|.+.||+|++++||.+.
T Consensus 15 qk~~l~~~i~~~l~~~lg~~~~~v~V~i~ 43 (61)
T 2opa_A 15 QKRNLVEKVTEAVKETTGASEEKIVVFIE 43 (61)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGCEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCcCcCeEEEEEE
Confidence 36666777788899999999999999775
No 29
>1gyx_A YDCE, B1461, hypothetical protein YDCE; tautomerase, isomerase, complete proteo; HET: EPE; 1.35A {Escherichia coli} SCOP: d.80.1.1 PDB: 1gyj_A* 1gyy_A*
Probab=40.53 E-value=34 Score=28.06 Aligned_cols=50 Identities=14% Similarity=0.146 Sum_probs=34.8
Q ss_pred cHHHHHHHHHHhhhcccCCCCCceEEEEeCChHH--HHHHHHHhcCCCCCcee
Q 004366 143 FKKEAIQWAWEFSTVEFGLPANRLWISVYEDDDE--AFEIWNKEVGVPVEHIK 193 (759)
Q Consensus 143 fK~eai~~awefLt~~l~l~~~rl~vTv~~~D~e--~~~iW~~~~g~~~~~I~ 193 (759)
-|++-++-..+.|.+.||+|++++||.+.+-+.+ ++ .|...+.=.++.++
T Consensus 16 qk~~L~~~l~~~l~~~lgip~~~v~V~i~e~~~~~w~~-v~~~~~~~~~~~l~ 67 (76)
T 1gyx_A 16 QKAALAADITDVIIRHLNSKDSSISIALQQIQPESWQA-IWDAEIAPQMEALI 67 (76)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCEEEEEECCGGGHHH-HHHHTTTTTTTTCS
T ss_pred HHHHHHHHHHHHHHHHhCcCCceEEEEEEEeChHHEEE-EEchhhccChhhee
Confidence 4666677777889999999999999999876543 44 55544333444444
No 30
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=40.08 E-value=16 Score=28.28 Aligned_cols=29 Identities=17% Similarity=0.162 Sum_probs=24.5
Q ss_pred cHHHHHHHHHHhhhcccCCCCCceEEEEe
Q 004366 143 FKKEAIQWAWEFSTVEFGLPANRLWISVY 171 (759)
Q Consensus 143 fK~eai~~awefLt~~l~l~~~rl~vTv~ 171 (759)
-|++-++-..+.|.+.||+|++++||.+.
T Consensus 15 ~k~~l~~~i~~~l~~~lg~p~~~v~v~i~ 43 (62)
T 1otf_A 15 QKETLIRQVSEAMANSLDAPLERVRVLIT 43 (62)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCcCcccEEEEEE
Confidence 46667777788899999999999999775
No 31
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=39.03 E-value=15 Score=28.65 Aligned_cols=29 Identities=24% Similarity=0.424 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhhhcccCCCCCceEEEEeC
Q 004366 144 KKEAIQWAWEFSTVEFGLPANRLWISVYE 172 (759)
Q Consensus 144 K~eai~~awefLt~~l~l~~~rl~vTv~~ 172 (759)
|++-++-.-+.|.+.+|+|++++||.+.+
T Consensus 17 k~~l~~~lt~~l~~~lg~~~~~v~V~i~e 45 (64)
T 3abf_A 17 KRELVRRLTEMASRLLGEPYEEVRVILYE 45 (64)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCcccEEEEEEE
Confidence 55666777788888999999999997753
No 32
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=37.14 E-value=97 Score=27.07 Aligned_cols=46 Identities=24% Similarity=0.195 Sum_probs=38.1
Q ss_pred CCCChHHHHHHhhcCCCChhhHHHHHHHcCC----eeChhhHHHHHHHHH
Q 004366 438 PRLSGQDAFLLYDTFGFPVEITKEVAEEHGV----SVDMKGFDIEMENQR 483 (759)
Q Consensus 438 ~~l~g~~af~LydTyGfP~dlt~~ia~e~g~----~vd~~~F~~~~~~~r 483 (759)
..|+++++-.++-+.|+|.+.+.+|.++... .||.++|..+|..-.
T Consensus 29 G~Is~~el~~~l~~~gl~~~el~~i~~~~D~d~dG~id~~EF~~~m~~~~ 78 (106)
T 1eh2_A 29 GFLSGDKVKPVLLNSKLPVDILGRVWELSDIDHDGMLDRDEFAVAMFLVY 78 (106)
T ss_dssp SCCBHHHHHHHHHTTTCCHHHHHHHHHHHCSSCSSBCCHHHHHHHHHHHH
T ss_pred CeEcHHHHHHHHHHcCCCHHHHHHHHHHHcCCCCCcCcHHHHHHHHHHHH
Confidence 3799999999999999999988888876443 488899999986543
No 33
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=33.55 E-value=1e+02 Score=25.74 Aligned_cols=46 Identities=11% Similarity=0.161 Sum_probs=37.3
Q ss_pred CCCChHHHHHHhhcCCCChhhHHHHHHHcCC----eeChhhHHHHHHHHH
Q 004366 438 PRLSGQDAFLLYDTFGFPVEITKEVAEEHGV----SVDMKGFDIEMENQR 483 (759)
Q Consensus 438 ~~l~g~~af~LydTyGfP~dlt~~ia~e~g~----~vd~~~F~~~~~~~r 483 (759)
..|+.+++-.++.+.|+|.+.+.+|.++... .||.++|..+|....
T Consensus 25 G~I~~~el~~~l~~~g~~~~~~~~i~~~~D~d~dG~i~~~EF~~~~~~~~ 74 (95)
T 1c07_A 25 GFVSGLEVREIFLKTGLPSTLLAHIWSLCDTKDCGKLSKDQFALAFHLIS 74 (95)
T ss_dssp SEECHHHHHHHHHTTTCCHHHHHHHHHHHCTTCSSSEETTTHHHHHHHHH
T ss_pred CcEeHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHHH
Confidence 3799999999999999999888888776433 488889999986544
No 34
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=32.70 E-value=17 Score=39.12 Aligned_cols=100 Identities=16% Similarity=0.181 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHhhCCCeeecCccCcCCCCccceecccccccc------------ccccccCC---------CCCCCcccc
Q 004366 51 DSIRKRFLDFYASRGHKVLPSASLVPEDPTVLLTIAGMLQFK------------PIFLGKVP---------RQVPRAATS 109 (759)
Q Consensus 51 ~eiR~~Fl~fF~~~gH~~v~s~slvp~d~tllf~nAGm~~fk------------~~f~g~~~---------p~~~r~~~~ 109 (759)
+.|-+.+-+||.++|...|..--|.+..+. .|+..+|+ +.+|-+.+ .-..|+-..
T Consensus 40 s~i~~~iR~ff~~~gF~EVeTPiL~~~~~~----~a~~~~F~~~~~~~~~~~~~~~yL~~Spql~~k~l~~~g~~rvyqI 115 (345)
T 3a5y_A 40 AAIMAEIRRFFADRGVLEVETPCMSQATVT----DIHLVPFETRFVGPGHSQGMNLWLMTSPEYHMKRLLVAGCGPVFQL 115 (345)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEESSCCC----CTTCCCCEEEECCSTTSCCEEEEECSCSHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEecCCC----CCccceEEEEecCcccccCCCEeecCCHHHHHHHHHHcCCCcEEEE
Confidence 355566778999999988875444442111 12222332 22221110 124677788
Q ss_pred cCcccCCCccccCCCCCccccccccc-CCccCcccHHHHHHHHHHhhhcccCC
Q 004366 110 QRCIRTNDVENVGRTSRHHTFFEMLG-NFSFGDYFKKEAIQWAWEFSTVEFGL 161 (759)
Q Consensus 110 QkCiR~nDldnVG~t~rH~TfFEMlG-n~SfgdYfK~eai~~awefLt~~l~l 161 (759)
-+|.|.-|+ |.||..=|.||- -.+|.|| ++.++.+=+++..++++
T Consensus 116 g~~FR~E~~-----~~rH~pEFt~lE~e~af~d~--~d~m~~~E~li~~v~~~ 161 (345)
T 3a5y_A 116 CRSFRNEEM-----GRYHNPEFTMLEWYRPHYDM--YRLMNEVDDLLQQVLDC 161 (345)
T ss_dssp EEEECCCCC-----BTTBCSEEEEEEEEEETCCH--HHHHHHHHHHHHHHHCC
T ss_pred EcceeCCCC-----cccccchhheeeeeeeCCCH--HHHHHHHHHHHHHHHcC
Confidence 899999665 789999999985 3566675 55666666666655543
No 35
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=32.13 E-value=47 Score=38.01 Aligned_cols=82 Identities=21% Similarity=0.268 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhhCCCeeecCccCcCCCCccceecccccccc------ccccccCC---------CCCCCcccccCcccCC
Q 004366 52 SIRKRFLDFYASRGHKVLPSASLVPEDPTVLLTIAGMLQFK------PIFLGKVP---------RQVPRAATSQRCIRTN 116 (759)
Q Consensus 52 eiR~~Fl~fF~~~gH~~v~s~slvp~d~tllf~nAGm~~fk------~~f~g~~~---------p~~~r~~~~QkCiR~n 116 (759)
.|-+.+-+||.++|...|..--|.+.++ .+|-..|+ +++|-+.+ .-..|+-..-+|+|.-
T Consensus 249 ~i~~~iR~ff~~~gF~EVeTPiL~~~~~-----egga~~F~v~~~~~~~yL~~Spql~~k~ll~~g~~rVfeI~~~FR~E 323 (548)
T 3i7f_A 249 ACCGLFREFLTSQKFVEIHTPKLIGCSS-----EGGSNIFEVKYFDRKAYLAQSPQLYKQMAIMGDFRKVFEVGPVFRAE 323 (548)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSBC------------------------CCBCSCTHHHHHHHHTTTCCEEEEEEEECCCS
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEecccC-----CCCcceeEEecCCCceEeccCHHHHHHHHHhcCcCcEEEEeeeEecC
Confidence 4555567899999998887655555221 12233332 33332211 1246677778999985
Q ss_pred CccccCCCCCcccccccccCC-ccC-cc
Q 004366 117 DVENVGRTSRHHTFFEMLGNF-SFG-DY 142 (759)
Q Consensus 117 DldnVG~t~rH~TfFEMlGn~-Sfg-dY 142 (759)
+. .|.||.+=|.||--. +|+ ||
T Consensus 324 ~~----~t~RHl~EFtmlE~e~af~~d~ 347 (548)
T 3i7f_A 324 NS----NTRRHLTEFEGLDIEMEIVENY 347 (548)
T ss_dssp CC----CSSSCCSCEEEEEEEEECSSCT
T ss_pred CC----CCCCcchhhhchhhhhhhhcCH
Confidence 53 378999999999764 787 56
No 36
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=30.82 E-value=89 Score=34.37 Aligned_cols=106 Identities=19% Similarity=0.280 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHhhCCCeeecCccCcCCCCccceeccc--------ccccc--cccc-ccCCC--------------C-CC
Q 004366 51 DSIRKRFLDFYASRGHKVLPSASLVPEDPTVLLTIAG--------MLQFK--PIFL-GKVPR--------------Q-VP 104 (759)
Q Consensus 51 ~eiR~~Fl~fF~~~gH~~v~s~slvp~d~tllf~nAG--------m~~fk--~~f~-g~~~p--------------~-~~ 104 (759)
..|.+.++++|.++|+..|-.-.+++.+ +|..+| |..|. .++| ...++ + --
T Consensus 176 ~~L~~~~~~~~~~~Gy~ev~tP~l~~~~---l~~~sG~~~~f~~emy~~~~~~l~LrPt~e~~i~~~~~~~i~s~~~LPl 252 (425)
T 2dq3_A 176 RALINFMLDLHTKKGYKEICPPHLVKPE---ILIGTGQLPKFEEDLYKCERDNLYLIPTAEVPLTNLYREEILKEENLPI 252 (425)
T ss_dssp HHHHHHHHHHHHHTTCEEEECCSEECHH---HHHHHSCTTTTGGGSCBCTTTCCEECSSTHHHHHGGGTTEEEETTTCCE
T ss_pred HHHHHHHHHHHHHcCCEEEECCccccHH---HHHhcCCCCcChhhheEecCCeEEEcCCCcHHHHHHHHhhccccccCCe
Confidence 4566778888889999998766665522 112222 22221 1222 11111 1 12
Q ss_pred CcccccCcccCCCccccCCC--C--CcccccccccCCccCcc-----cHHHHHHHHHHhhhcccCCC
Q 004366 105 RAATSQRCIRTNDVENVGRT--S--RHHTFFEMLGNFSFGDY-----FKKEAIQWAWEFSTVEFGLP 162 (759)
Q Consensus 105 r~~~~QkCiR~nDldnVG~t--~--rH~TfFEMlGn~SfgdY-----fK~eai~~awefLt~~l~l~ 162 (759)
|++-.++|.|.- ...-|++ + |=|. |.|..-++|+.= .-+|.+.++.++|. .||||
T Consensus 253 rl~~~g~~FR~E-~~~~Gr~~~Gl~R~re-F~q~E~~~f~~pe~s~~~~~e~i~~~~~il~-~LGL~ 316 (425)
T 2dq3_A 253 YLTAYTPCYRRE-AGAYGKDIRGIIRQHQ-FDKVELVKIVHPDTSYDELEKLVKDAEEVLQ-LLGLP 316 (425)
T ss_dssp EEEEEEEEECCC-CSCCSSSCSSSSSCSE-EEEEEEEEEECGGGHHHHHHHHHHHHHHHHH-HHTCC
T ss_pred EEEEecCEecCC-CCcccccccCcccccc-eEEeeEEEECCHHHHHHHHHHHHHHHHHHHH-HCCCc
Confidence 667788999963 2222322 1 3344 566677888632 22677888999885 58887
No 37
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} SCOP: a.39.1.6
Probab=29.67 E-value=1e+02 Score=26.34 Aligned_cols=45 Identities=16% Similarity=0.165 Sum_probs=37.3
Q ss_pred CCCChHHHHHHhhcCCCChhhHHHHHHHcCC----eeChhhHHHHHHHH
Q 004366 438 PRLSGQDAFLLYDTFGFPVEITKEVAEEHGV----SVDMKGFDIEMENQ 482 (759)
Q Consensus 438 ~~l~g~~af~LydTyGfP~dlt~~ia~e~g~----~vd~~~F~~~~~~~ 482 (759)
..|+.+++-.+..+.|+|-+.+.+|.++... .||.++|..+|...
T Consensus 26 G~Is~~el~~~l~~~~l~~~~l~~i~~~~D~d~dG~i~~~EF~~~~~~~ 74 (99)
T 1qjt_A 26 GRVLALDAAAFLKKSGLPDLILGKIWDLADTDGKGVLSKQEFFVALRLV 74 (99)
T ss_dssp SCCCSHHHHHHHHTSSSCHHHHHHHHHHHCCSSSSSCCSHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHH
Confidence 3699999999999999999988888877433 48889999998644
No 38
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=29.54 E-value=41 Score=26.38 Aligned_cols=29 Identities=17% Similarity=0.258 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhhhcccCCCCCceEEEEeC
Q 004366 144 KKEAIQWAWEFSTVEFGLPANRLWISVYE 172 (759)
Q Consensus 144 K~eai~~awefLt~~l~l~~~rl~vTv~~ 172 (759)
|++-++-.-+.+.+.+|+|++.++|.+.+
T Consensus 15 K~~L~~~it~~~~~~lg~~~~~v~V~i~E 43 (62)
T 3m20_A 15 KREFVERLTSVAAEIYGMDRSAITILIHE 43 (62)
T ss_dssp HHHHHHHHHHHHHHHHTCCTTSCEEEEEC
T ss_pred HHHHHHHHHHHHHHHhCcCcceEEEEEEE
Confidence 66667777788888999999999997753
No 39
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=29.40 E-value=21 Score=39.59 Aligned_cols=95 Identities=19% Similarity=0.261 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhhCCCeeecCccCcC--CCC--ccceecc-ccccccccccccCCC---------CCCCcccccCcccCCC
Q 004366 52 SIRKRFLDFYASRGHKVLPSASLVP--EDP--TVLLTIA-GMLQFKPIFLGKVPR---------QVPRAATSQRCIRTND 117 (759)
Q Consensus 52 eiR~~Fl~fF~~~gH~~v~s~slvp--~d~--tllf~nA-Gm~~fk~~f~g~~~p---------~~~r~~~~QkCiR~nD 117 (759)
.|-+.+-+||.++|...|..--+.+ ..+ .++-|+. | ++++|-+ .| ...|+-..-+|.|.-+
T Consensus 139 ~i~~~ir~ff~~~gF~eV~TP~l~~~~~e~~~~~f~~~~~~----~~~~L~~-Spql~~~~~~~g~~rvf~ig~~FR~E~ 213 (429)
T 1wyd_A 139 LALKAFRETLYKEGFIEIFTPKIIASATEGGAQLFPVIYFG----KEAFLAQ-SPQLYKELMAGVVERVFEVAPAWRAEE 213 (429)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESSCSSTTCCCCEEEETT----EEEEECS-CCHHHHHHHHHHHSEEEEEEEEECCCC
T ss_pred HHHHHHHHHHhhCCCEEEECCEEEeeCCCCCceeEEEecCC----ceEEecC-CcHHHHHHHHhCcCceEEEcccccccC
Confidence 4566788999999998886654443 111 1222211 1 1233311 11 1357778889999864
Q ss_pred ccccCCCCCcccccccccC-CccCcccHHHHHHHHHHhhhc
Q 004366 118 VENVGRTSRHHTFFEMLGN-FSFGDYFKKEAIQWAWEFSTV 157 (759)
Q Consensus 118 ldnVG~t~rH~TfFEMlGn-~SfgdYfK~eai~~awefLt~ 157 (759)
.+ ++||..=|-|+.- .+|.|| .|.+..+.+++..
T Consensus 214 ~~----~~RH~pEFtqle~e~~~~~~--~dlm~~~e~ll~~ 248 (429)
T 1wyd_A 214 SD----TPFHLAEFISMDVEMAFADY--NDVMQLLEKILHN 248 (429)
T ss_dssp CC----SSSCCSEEEEEEEEEETCCH--HHHHHHHHHHHHH
T ss_pred Cc----cccccceeeEeeeeecCCCH--HHHHHHHHHHHHH
Confidence 43 5799988888764 455564 5566666555443
No 40
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=28.74 E-value=21 Score=39.64 Aligned_cols=96 Identities=16% Similarity=0.255 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhhCCCeeecCccCcCCCCccceeccccccc----cccccccC---------CCCCCCcccccCcccCCCc
Q 004366 52 SIRKRFLDFYASRGHKVLPSASLVPEDPTVLLTIAGMLQF----KPIFLGKV---------PRQVPRAATSQRCIRTNDV 118 (759)
Q Consensus 52 eiR~~Fl~fF~~~gH~~v~s~slvp~d~tllf~nAGm~~f----k~~f~g~~---------~p~~~r~~~~QkCiR~nDl 118 (759)
+|-+.+-+||.++|...|..--+.+.++.- .|-+.+| ++++|-+. ..-..|+-..-+|+|.-+.
T Consensus 142 ~i~~~iR~f~~~~gF~EVeTPiL~~~~~eg---~~~~f~~~~~~~~~yL~~Spql~~q~l~~~g~~rvf~i~~~FR~E~~ 218 (438)
T 3nem_A 142 SVFKAVRDFFHENGFIEIHTPKIIATATEG---GTELFPMKYFEEDAFLAQSPQLYKQIMMASGLDRVYEIAPIFRAEEH 218 (438)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESSCSSC---SSSCCEEEETTEEEEECSCSHHHHHHGGGTTCCEEEEEEEEECCCSS
T ss_pred HHHHHHHHHHHHCCcEEEeCCEEecCCCCC---CccceeEeeCCccEEEecChHHHHHHHHhcCCCceEEEcceEECCCC
Confidence 455667789999998888643333311000 0001111 22233211 0135677788899998654
Q ss_pred cccCCCCCcccccccccC-CccCc-c-----cHHHHHHHHHHh
Q 004366 119 ENVGRTSRHHTFFEMLGN-FSFGD-Y-----FKKEAIQWAWEF 154 (759)
Q Consensus 119 dnVG~t~rH~TfFEMlGn-~Sfgd-Y-----fK~eai~~awef 154 (759)
+ |.||..=|.||-- .+|.| | .-++-|..++.-
T Consensus 219 ~----t~RH~pEFt~le~e~a~~~~~~d~m~~~E~li~~~~~~ 257 (438)
T 3nem_A 219 N----TTRHLNEAWSIDSEMAFIEDEEEVMSFLERLVAHAINY 257 (438)
T ss_dssp C----CTTCCSEEEEEEEEEESCSSHHHHHHHHHHHHHHHHHH
T ss_pred C----CcccccceeeeeeeeccCccHHHHHHHHHHHHHHHHHH
Confidence 3 6799988888764 56766 5 234445555543
No 41
>1mww_A Hypothetical protein HI1388.1; structural genomics, structure 2 function project, S2F, unknown function; HET: GLU; 2.08A {Haemophilus influenzae} SCOP: d.80.1.4
Probab=28.69 E-value=29 Score=31.23 Aligned_cols=29 Identities=21% Similarity=0.258 Sum_probs=24.8
Q ss_pred cHHHHHHHHHHhhhcccCCCCCceEEEEe
Q 004366 143 FKKEAIQWAWEFSTVEFGLPANRLWISVY 171 (759)
Q Consensus 143 fK~eai~~awefLt~~l~l~~~rl~vTv~ 171 (759)
=|++-++-..+.|.+.||+|++++||.+.
T Consensus 74 qK~~l~~~l~~~l~~~lg~~~~~v~V~i~ 102 (128)
T 1mww_A 74 TKKRLIKMLFSELEYKLGIRAHDVEITIK 102 (128)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCcChhhEEEEEE
Confidence 46777888888899999999999999875
No 42
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=28.45 E-value=22 Score=39.31 Aligned_cols=97 Identities=13% Similarity=0.148 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhhCCCeeecCccCcC--CCC--ccceecc-ccccccccccccCCC---------CCCCcccccCcccCC
Q 004366 51 DSIRKRFLDFYASRGHKVLPSASLVP--EDP--TVLLTIA-GMLQFKPIFLGKVPR---------QVPRAATSQRCIRTN 116 (759)
Q Consensus 51 ~eiR~~Fl~fF~~~gH~~v~s~slvp--~d~--tllf~nA-Gm~~fk~~f~g~~~p---------~~~r~~~~QkCiR~n 116 (759)
+.|.+.+-+||.++|...|..--+.+ ..+ .++-++. | ++++|-. .| ...|+-..-+|.|.-
T Consensus 129 s~i~~~ir~~f~~~gF~EV~TPil~~~~~e~~~~~f~~~~~g----~~~~L~~-Spel~~~~l~~g~~rvf~ig~~FR~E 203 (422)
T 1n9w_A 129 AALVRGFRRYLDRQDFTEIFTPKVVRAGAEGGSGLFGVDYFE----KRAYLAQ-SPQLYKQIMVGVFERVYEVAPVWRME 203 (422)
T ss_dssp HHHHHHHHHHHHHTTCEECCCC---------------------------------CHHHHHHHHHHHSEEEEEEEC----
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEEeCCCCCceeEEEeeCC----CcEEeee-CHHHHHHHHhhCCCceeEEeCceECC
Confidence 35666788999999999887544433 111 1222221 1 1223311 11 135777888999985
Q ss_pred CccccCCCCCcccccccccC-CccC-cccHHHHHHHHHHhhhcc
Q 004366 117 DVENVGRTSRHHTFFEMLGN-FSFG-DYFKKEAIQWAWEFSTVE 158 (759)
Q Consensus 117 DldnVG~t~rH~TfFEMlGn-~Sfg-dYfK~eai~~awefLt~~ 158 (759)
+.+ ++||..=|.|+.- .+|. || +|.+..+.+++...
T Consensus 204 ~~~----~~RH~pEFtqle~e~~~~~d~--~dlm~l~e~ll~~l 241 (422)
T 1n9w_A 204 EHH----TSRHLNEYLSLDVEMGFIADE--EDLMRLEEALLAEM 241 (422)
T ss_dssp -------------CCEEEEEEEESCSSH--HHHHHHHHHHHHHH
T ss_pred CCC----CCcccceeEEeeeeeeCCCCH--HHHHHHHHHHHHHH
Confidence 443 5699988888875 4455 65 66777776665443
No 43
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=28.24 E-value=22 Score=40.43 Aligned_cols=98 Identities=12% Similarity=0.180 Sum_probs=55.4
Q ss_pred HHHHHHHHHhhCCCeeecCccCcCCC--C-ccceeccccccc-cccccccCCC---------CCCCcccccCcccCCCcc
Q 004366 53 IRKRFLDFYASRGHKVLPSASLVPED--P-TVLLTIAGMLQF-KPIFLGKVPR---------QVPRAATSQRCIRTNDVE 119 (759)
Q Consensus 53 iR~~Fl~fF~~~gH~~v~s~slvp~d--~-tllf~nAGm~~f-k~~f~g~~~p---------~~~r~~~~QkCiR~nDld 119 (759)
|-+.+-+||.++|...|..--+.+.. . -=.|+.- .+.| ++++|-..+- -..|+-..-+|+|.-+++
T Consensus 182 i~~~iR~f~~~~gF~EVeTPiL~~~~gGa~a~~F~t~-~~~~~~~~yL~~SpqL~lk~liv~g~~rVyeig~~FR~E~~~ 260 (521)
T 3bju_A 182 IITYIRSFLDELGFLEIETPMMNIIPGGAVAKPFITY-HNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGID 260 (521)
T ss_dssp HHHHHHHHHHHTTCEECCCCSEESSCCSSSCCCCEEE-ETTTTEEEEECSCSHHHHHHHHHTTCCEEEEEEEEECCSCCB
T ss_pred HHHHHHHHHHHCCCEEEeCceeeccCCCccccceeee-cccCCcceEeeCCHHHHHHHHHhcCcCceEEEEcceeCCCCC
Confidence 34456689999998888654444411 0 0011110 0111 1233332111 356777888999996443
Q ss_pred ccCCCCCccccccccc-CCccCccc-----HHHHHHHHHHhhh
Q 004366 120 NVGRTSRHHTFFEMLG-NFSFGDYF-----KKEAIQWAWEFST 156 (759)
Q Consensus 120 nVG~t~rH~TfFEMlG-n~SfgdYf-----K~eai~~awefLt 156 (759)
.||..=|.||= -.+|.||- -++-|..+|.-+.
T Consensus 261 -----trH~pEFtmlE~e~af~d~~dlm~l~E~li~~v~~~v~ 298 (521)
T 3bju_A 261 -----LTHNPEFTTCEFYMAYADYHDLMEITEKMVSGMVKHIT 298 (521)
T ss_dssp -----TTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHH
T ss_pred -----CccchhhhhhhhhhhcCCHHHHHHHHHHHHHHHHHHHh
Confidence 38999999986 46778873 3455556665443
No 44
>3il3_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid biosynthesis, antibiotic, acyltransferase, cytoplasm, lipid synthesis; 2.70A {Haemophilus influenzae}
Probab=28.07 E-value=21 Score=37.58 Aligned_cols=76 Identities=13% Similarity=0.156 Sum_probs=51.3
Q ss_pred cccccccCCccCcccHHHHHHHHHHhhhcccCCCCCce-EEEEeCChHHHHHHHHHhcCCCCCceeccCCCCCccCCCCC
Q 004366 129 TFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPANRL-WISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGAT 207 (759)
Q Consensus 129 TfFEMlGn~SfgdYfK~eai~~awefLt~~l~l~~~rl-~vTv~~~D~e~~~iW~~~~g~~~~~I~~~~~~dNfW~~G~~ 207 (759)
.+|.|.|...|.-+- +.+.-+++-+.+..|++++.+ |+=.+....-..+-+.+.+|+|++++. |.+...
T Consensus 209 ~~~~~~g~~v~~~~~--~~~~~~i~~~l~~~gl~~~did~~v~Hq~~~~i~~~~~~~lgl~~ek~~--------~~l~~~ 278 (323)
T 3il3_A 209 GYIEMQGNETFKLAV--RELSNVVEETLLANNLDKKDLDWLVPHQANLRIITATAKKLEMDMSQVV--------VTLDKY 278 (323)
T ss_dssp SCCEECHHHHHHHHH--HHHHHHHHHHHHTTTCCTTTCCEEEECCSCHHHHHHHHHHTTCCGGGBC--------CCHHHH
T ss_pred CcEEEcCHHHHHHHH--HHHHHHHHHHHHHcCCCHHHCCEEEEcCCCHHHHHHHHHHcCcCHHHhh--------ccHhhc
Confidence 467888876664221 223334444445679999888 676788887777888888999999874 223345
Q ss_pred CCCCCce
Q 004366 208 GPCGPCS 214 (759)
Q Consensus 208 GpcGPcs 214 (759)
|+||.+|
T Consensus 279 GNt~sas 285 (323)
T 3il3_A 279 ANNSAAT 285 (323)
T ss_dssp CBCGGGH
T ss_pred CchHHHH
Confidence 7888776
No 45
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=27.74 E-value=23 Score=39.63 Aligned_cols=84 Identities=18% Similarity=0.341 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhhCCCeeecCccCcCCCC---ccceeccccccc-cccccccCCC--------CCCCcccccCcccCCCcc
Q 004366 52 SIRKRFLDFYASRGHKVLPSASLVPEDP---TVLLTIAGMLQF-KPIFLGKVPR--------QVPRAATSQRCIRTNDVE 119 (759)
Q Consensus 52 eiR~~Fl~fF~~~gH~~v~s~slvp~d~---tllf~nAGm~~f-k~~f~g~~~p--------~~~r~~~~QkCiR~nDld 119 (759)
+|-+.+-+||.++|...|..=-+.+.++ .-+|. .+.| ++++|-+.+. ...|+-..-+|+|.-++
T Consensus 161 ~i~~~iR~ff~~~gF~EVeTPiL~~s~~eGg~~~f~---~~~~~~~~~L~~SpqL~lq~l~~g~~rVyeig~~FR~E~~- 236 (456)
T 3m4p_A 161 EIQWYFRKYYHDNHFTEIQPPTIVKTQCEGGSTLFK---LQYFNEPAYLTQSSQLYLESVIASLGKSFCMLSSYRAEQS- 236 (456)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEEC------CCCCE---EEETTEEEEECSCCHHHHHTTHHHHSSEEEEEEEECCCSC-
T ss_pred HHHHHHHHHHHhCCCEEEeCCeeecCCCCCcccccc---ccccCCCcccccCHHHHHHHHHhccCcEEEEEhheecCCC-
Confidence 4555667899999988886543333211 11121 0111 2223322110 24677778899997543
Q ss_pred ccCCCCCcccccccccC-CccCcc
Q 004366 120 NVGRTSRHHTFFEMLGN-FSFGDY 142 (759)
Q Consensus 120 nVG~t~rH~TfFEMlGn-~SfgdY 142 (759)
.|.||..=|.||-- .+|.||
T Consensus 237 ---~t~rH~pEFtmlE~e~af~d~ 257 (456)
T 3m4p_A 237 ---RTVRHLAEYLHLEAELPFISF 257 (456)
T ss_dssp ---CCSSCCSEEEEEEEEEESCCH
T ss_pred ---CCCcchHHHHHhHHHHhcCCH
Confidence 37899988888765 567776
No 46
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=27.12 E-value=23 Score=40.01 Aligned_cols=96 Identities=17% Similarity=0.275 Sum_probs=53.0
Q ss_pred HHHHHHHHHhhCCCeeecCccCcC--CCC-ccceeccccccc-cccccccCCC---------CCCCcccccCcccCCCcc
Q 004366 53 IRKRFLDFYASRGHKVLPSASLVP--EDP-TVLLTIAGMLQF-KPIFLGKVPR---------QVPRAATSQRCIRTNDVE 119 (759)
Q Consensus 53 iR~~Fl~fF~~~gH~~v~s~slvp--~d~-tllf~nAGm~~f-k~~f~g~~~p---------~~~r~~~~QkCiR~nDld 119 (759)
|-+.+-+||.++|...|..--|.+ .-. .=.|+.- .+.| ++++|-+.+- -..|+-..-+|+|.-+++
T Consensus 189 i~~~iR~f~~~~gFlEVeTPiL~~~~~Ga~ar~F~t~-~~~~~~~~yL~~SpqLylk~L~v~G~~rVyeIg~~FR~E~~~ 267 (504)
T 1e1o_A 189 ILAAIRQFMVARGFMEVETPMMQVIPGGASARPFITH-HNALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGIS 267 (504)
T ss_dssp HHHHHHHHHHTTTCEECCCCSEESSCCSSCCCCCEEE-ETTTTEEEEECSCSHHHHHHHHHHTCCEEEEEEEEECCCCCC
T ss_pred HHHHHHHHHHHCCCEEEECCeEEecCCCCcccceEec-cCCCCceEEeccCHHHHHHHHhhcCCCcEEEEcccccCCCCC
Confidence 344566899999988886544433 111 0112110 0111 1233322110 246777888999996652
Q ss_pred ccCCCCCcccccccccC-CccCcccHHHHHHHHHHhhh
Q 004366 120 NVGRTSRHHTFFEMLGN-FSFGDYFKKEAIQWAWEFST 156 (759)
Q Consensus 120 nVG~t~rH~TfFEMlGn-~SfgdYfK~eai~~awefLt 156 (759)
.||..=|.||.- .+|.|| ++.++.+-+++.
T Consensus 268 -----~rH~pEFt~lE~e~af~d~--~dlm~l~E~li~ 298 (504)
T 1e1o_A 268 -----VRHNPEFTMMELYMAYADY--HDLIELTESLFR 298 (504)
T ss_dssp -----C-CCSEEEEEEEEEESCCH--HHHHHHHHHHHH
T ss_pred -----ccccCceeeeeeeecCCCH--HHHHHHHHHHHH
Confidence 499999999874 677786 445555544443
No 47
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=27.01 E-value=24 Score=39.86 Aligned_cols=98 Identities=11% Similarity=0.199 Sum_probs=56.2
Q ss_pred HHHHHHHHHHhhCCCeeecCccCcCC--CC-ccceeccccccc-cccccccCC---------CCCCCcccccCcccCCCc
Q 004366 52 SIRKRFLDFYASRGHKVLPSASLVPE--DP-TVLLTIAGMLQF-KPIFLGKVP---------RQVPRAATSQRCIRTNDV 118 (759)
Q Consensus 52 eiR~~Fl~fF~~~gH~~v~s~slvp~--d~-tllf~nAGm~~f-k~~f~g~~~---------p~~~r~~~~QkCiR~nDl 118 (759)
.|-+.+-+||.++|...|..--+.+. -. .-.|+-- .+.| ++++|-+.+ .-..|+-..-+|+|.-++
T Consensus 179 ~i~~~iR~ff~~~gF~EVeTPiL~~~~~Ga~a~~F~~~-~~~~~~~~yLr~SpqLylk~l~v~G~~rVyeig~~FR~E~~ 257 (493)
T 3a74_A 179 LIIQSMRRYLDSHGYLEVETPMMHAVAGGAAARPFITH-HNALDMTLYMRIAIELHLKRLIVGGLEKVYEIGRVFRNEGI 257 (493)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESSCCSSSSCCCEEE-ETTTTEEEEECSCSHHHHHHHHHTTCCEEEEEEEEECCCCC
T ss_pred HHHHHHHHHHHhCCeEEEECCeEEecCCCCcccceEec-ccCCCceeEEecCHHHHHHHHhhcccCceEEECccccCCCC
Confidence 44455668999999888865444431 11 0112110 0011 123332211 124677788899999665
Q ss_pred cccCCCCCccccccccc-CCccCcccHHHHHHHHHHhhhc
Q 004366 119 ENVGRTSRHHTFFEMLG-NFSFGDYFKKEAIQWAWEFSTV 157 (759)
Q Consensus 119 dnVG~t~rH~TfFEMlG-n~SfgdYfK~eai~~awefLt~ 157 (759)
+ .||..=|.||. -.+|.|| ++.++.+-+++..
T Consensus 258 ~-----~rH~pEFT~lE~e~af~d~--~dlm~l~E~ll~~ 290 (493)
T 3a74_A 258 S-----TRHNPEFTMLELYEAYADF--RDIMKLTENLIAH 290 (493)
T ss_dssp B-----TTBCSEEEEEEEEEETCCH--HHHHHHHHHHHHH
T ss_pred C-----cccCCceeEEEEEecCCCH--HHHHHHHHHHHHH
Confidence 3 49999999988 4677786 4556666555543
No 48
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=26.89 E-value=24 Score=40.23 Aligned_cols=98 Identities=18% Similarity=0.211 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhhCCCeeecCccCcC--CCCc-cceeccccccc-cccccccCC---------CCCCCcccccCcccCCCc
Q 004366 52 SIRKRFLDFYASRGHKVLPSASLVP--EDPT-VLLTIAGMLQF-KPIFLGKVP---------RQVPRAATSQRCIRTNDV 118 (759)
Q Consensus 52 eiR~~Fl~fF~~~gH~~v~s~slvp--~d~t-llf~nAGm~~f-k~~f~g~~~---------p~~~r~~~~QkCiR~nDl 118 (759)
.|-+.+-+||.++|...|..=-+.+ ..-+ -.|+.- .+.| ++.+|-..+ .-..|+-..-+|+|.-++
T Consensus 209 ~i~~~iR~ff~~~gFlEVeTPiL~~~~gGA~a~pF~t~-~n~~~~~~yL~~SpqLylk~L~v~G~~rVyeIg~~FR~E~~ 287 (529)
T 4ex5_A 209 KAIASIRKFMGDADFMEVETPMLHPIPGGAAAKPFVTH-HNALDMEMFLRIAPELYLKRLIVGGFERVFEINRNFRNEGV 287 (529)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESSCCSSSSCCCEEE-ETTTTEEEEECSCSHHHHHHHHHTTCSEEEEEEEEECCSCC
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeeccCCCCcccccccc-cccCCcceecccCHHHHHHHHHhcCCCcEEEeehheecCCC
Confidence 3445566899999988886544443 1100 112100 0111 223332211 135677788899999654
Q ss_pred cccCCCCCcccccccccC-CccCccc-----HHHHHHHHHHhh
Q 004366 119 ENVGRTSRHHTFFEMLGN-FSFGDYF-----KKEAIQWAWEFS 155 (759)
Q Consensus 119 dnVG~t~rH~TfFEMlGn-~SfgdYf-----K~eai~~awefL 155 (759)
+ .||..=|.||-- .+|.||- -++-|..+|.-+
T Consensus 288 ~-----~rH~pEFtmlE~e~af~d~~dlm~l~E~li~~v~~~v 325 (529)
T 4ex5_A 288 S-----PRHNPEFTMMEFYAAYTDYRWLMDFTERLIRQAAVDA 325 (529)
T ss_dssp B-----TTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHH
T ss_pred C-----CCcccHhHhhhhhhhcCCHHHHHHHHHHHHHHHHHHH
Confidence 3 599999999864 5677863 344455555544
No 49
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=26.77 E-value=24 Score=40.41 Aligned_cols=28 Identities=32% Similarity=0.558 Sum_probs=23.8
Q ss_pred CcccccchHHHHHHHHhCCCCccccccc
Q 004366 262 KNIDTGLGLERIARILQKVPNNYETDLI 289 (759)
Q Consensus 262 k~IDTGmGlERl~~vlqg~~s~ydtd~F 289 (759)
+|=--|+|+|||++++-|.+|.=|+-+|
T Consensus 512 PhgG~GlGiDRLvMlltg~~nIRdVi~F 539 (548)
T 3i7f_A 512 PHAGCGIGLERITMLYLGIPNIRKVTLF 539 (548)
T ss_dssp CEEEEEEEHHHHHHHHTTCSCGGGGSSS
T ss_pred CceEEEEcHHHHHHHHhCCccHHHhhcC
Confidence 4556799999999999999998887665
No 50
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=26.76 E-value=24 Score=39.08 Aligned_cols=93 Identities=16% Similarity=0.218 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhhCCCeeecCccCcC---CCC-ccceeccccccc-cccccccCCC--------CCCCcccccCcccCCCc
Q 004366 52 SIRKRFLDFYASRGHKVLPSASLVP---EDP-TVLLTIAGMLQF-KPIFLGKVPR--------QVPRAATSQRCIRTNDV 118 (759)
Q Consensus 52 eiR~~Fl~fF~~~gH~~v~s~slvp---~d~-tllf~nAGm~~f-k~~f~g~~~p--------~~~r~~~~QkCiR~nDl 118 (759)
.|-+.+-+||.++|...|..--+.+ ..- ..+-+|+ | ++++|-+.+- ...|+-..-+|+|.-|+
T Consensus 137 ~i~~~iR~ff~~~gFlEVeTPiL~~s~~eG~~~~F~~~~----~g~~~~L~~SpqLylq~l~~g~~rvfeIg~~FR~E~~ 212 (435)
T 2xgt_A 137 AATRAMREHFYNAGYVEVAPPTLVQTQVEGGSTLFNLDY----FGEQSFLTQSSQLYLETCIPTLGDVFCIAQSYRAEKS 212 (435)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESCCSSCTTSCCEEEE----TTEEEEECSCSHHHHHHHHHHHCSEEEEEEEECCCSS
T ss_pred HHHHHHHHHHHHCCCEEEECCeEeeccCCCchhceeecc----CCcccccCCChHHHHHHhhhccCceEEEecceecCCC
Confidence 3444566899999988876433322 111 1222221 1 1222321110 24677788899998654
Q ss_pred cccCCCCCcccccccccC-CccCcccHHHHHHHHHHh
Q 004366 119 ENVGRTSRHHTFFEMLGN-FSFGDYFKKEAIQWAWEF 154 (759)
Q Consensus 119 dnVG~t~rH~TfFEMlGn-~SfgdYfK~eai~~awef 154 (759)
.|.||..=|.||-- .+|.|| ++.++.+-++
T Consensus 213 ----~t~RH~~EFT~lE~e~af~d~--~d~m~~~E~l 243 (435)
T 2xgt_A 213 ----RTRRHLAEYAHVEAECPFITL--DDLMEKIEEL 243 (435)
T ss_dssp ----CCTTCCSEEEEEEEEEESCCH--HHHHHHHHHH
T ss_pred ----CccccccceeEEEEEEecCCH--HHHHHHHHHH
Confidence 36799988888874 667776 3444444333
No 51
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=26.66 E-value=24 Score=39.04 Aligned_cols=98 Identities=15% Similarity=0.083 Sum_probs=56.9
Q ss_pred HHHHHHHHHHhhCCCeeecCccCcC--CCC--ccceeccccccccccccccCC--------CCCCCcccccCcccCCCcc
Q 004366 52 SIRKRFLDFYASRGHKVLPSASLVP--EDP--TVLLTIAGMLQFKPIFLGKVP--------RQVPRAATSQRCIRTNDVE 119 (759)
Q Consensus 52 eiR~~Fl~fF~~~gH~~v~s~slvp--~d~--tllf~nAGm~~fk~~f~g~~~--------p~~~r~~~~QkCiR~nDld 119 (759)
.|-+.+-+||.++|...|..--+.+ ..+ .++-|+..= ++++|-+.+ ....|+-..-+|.|.-+.+
T Consensus 140 ~i~~~ir~~f~~~gF~eVeTP~l~~~~~e~~~~~f~~~~~~---~~~~Lr~Spel~~~~~~~g~~rvf~ig~~FR~E~~~ 216 (434)
T 1x54_A 140 TLIMAAREWLLKDGWHEVFPPILVTGAVEGGATLFKLKYFD---KYAYLSQSAQLYLEAAIFGLEKVWSLTPSFRAEKSR 216 (434)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESCCSSCGGGCCEEEETT---EEEEECSCSHHHHHHHHHHHSEEEEEEEEECCCCCC
T ss_pred HHHHHHHHHHHHCCCEEEeCcEEEeecCCCCceeEEEeecC---CcEEeccChHHHHHHHhcCccceEEEecceecCCCC
Confidence 4556788999999998887654444 122 111121100 122222100 0135777888999985442
Q ss_pred ccCCCCCcccccccccC-CccCcccHHHHHHHHHHhhhcc
Q 004366 120 NVGRTSRHHTFFEMLGN-FSFGDYFKKEAIQWAWEFSTVE 158 (759)
Q Consensus 120 nVG~t~rH~TfFEMlGn-~SfgdYfK~eai~~awefLt~~ 158 (759)
++||..=|.|+.- .+|.|| .|.+..+.+++...
T Consensus 217 ----~~RH~pEFtqle~e~~~~~~--~dlm~~~e~ll~~l 250 (434)
T 1x54_A 217 ----TRRHLTEFWHLELEAAWMDL--WDIMKVEEELVSYM 250 (434)
T ss_dssp ----CSSCCSEEEEEEEEEETCCH--HHHHHHHHHHHHHH
T ss_pred ----CcccccEEEEeeEEEcCCCH--HHHHHHHHHHHHHH
Confidence 5699988888775 444564 66777766665443
No 52
>2aal_A Malonate semialdehyde decarboxylase; tautomerase superfamily, beta-alpha-beta, homotrimeric, LYAS; 1.65A {Pseudomonas pavonaceae} SCOP: d.80.1.6 PDB: 2aag_A 2aaj_A
Probab=26.12 E-value=33 Score=31.04 Aligned_cols=29 Identities=10% Similarity=0.079 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhhhcccCCCCCceEEEEeC
Q 004366 144 KKEAIQWAWEFSTVEFGLPANRLWISVYE 172 (759)
Q Consensus 144 K~eai~~awefLt~~l~l~~~rl~vTv~~ 172 (759)
|++-++-..+.|.+.||++++++||.+.+
T Consensus 81 K~~l~~~l~~~l~~~lg~~~~~v~I~i~e 109 (131)
T 2aal_A 81 KVCFYKLLTGALERDCGISPDDVIVALVE 109 (131)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCcCcccEEEEEEE
Confidence 78888888899999999999999998754
No 53
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Probab=26.04 E-value=1.2e+02 Score=27.53 Aligned_cols=46 Identities=17% Similarity=0.264 Sum_probs=38.1
Q ss_pred CCCChHHHHHHhhcCCCChhhHHHHHHHcCC----eeChhhHHHHHHHHH
Q 004366 438 PRLSGQDAFLLYDTFGFPVEITKEVAEEHGV----SVDMKGFDIEMENQR 483 (759)
Q Consensus 438 ~~l~g~~af~LydTyGfP~dlt~~ia~e~g~----~vd~~~F~~~~~~~r 483 (759)
..|+|++|-.++-.-|+|.+....|-+.... .+|.++|..+|..-.
T Consensus 47 G~Isg~elr~~~~~sgLp~~~L~~Iw~laD~d~dG~Ld~~EF~~aM~Li~ 96 (121)
T 3fia_A 47 GFITGDQARNFFFQSGLPQPVLAQIWALADMNNDGRMDQVEFSIAMKLIK 96 (121)
T ss_dssp TBEEHHHHHHHHGGGCCCHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHH
T ss_pred CeECHHHHHHHHHHcCCCHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHH
Confidence 3799999999999999999999888776433 678899999886544
No 54
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=25.94 E-value=25 Score=39.51 Aligned_cols=28 Identities=25% Similarity=0.423 Sum_probs=24.2
Q ss_pred CcccccchHHHHHHHHhCCCCccccccc
Q 004366 262 KNIDTGLGLERIARILQKVPNNYETDLI 289 (759)
Q Consensus 262 k~IDTGmGlERl~~vlqg~~s~ydtd~F 289 (759)
+|=--|+|+|||+++|-|.+|.=|+=+|
T Consensus 451 PhgG~glGiDRLvmll~g~~~IRdVi~F 478 (487)
T 1eov_A 451 PHAGGGIGLERVVMFYLDLKNIRRASLF 478 (487)
T ss_dssp CEEEEEEEHHHHHHHHTTCSSGGGGCSS
T ss_pred CCeEEEEhHHHHHHHHcCCCcHHheeec
Confidence 6677799999999999999998877555
No 55
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=25.83 E-value=38 Score=27.34 Aligned_cols=28 Identities=14% Similarity=0.184 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhhhcccCCCCCceEEEEe
Q 004366 144 KKEAIQWAWEFSTVEFGLPANRLWISVY 171 (759)
Q Consensus 144 K~eai~~awefLt~~l~l~~~rl~vTv~ 171 (759)
|++-++-..+.+.+.+|+|++.+||.+.
T Consensus 17 K~~L~~~it~~l~~~lg~p~~~v~V~i~ 44 (72)
T 3mb2_A 17 KAELARALSAAAAAAFDVPLAEVRLIIQ 44 (72)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCcccEEEEEE
Confidence 6677777788888899999999999774
No 56
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=25.80 E-value=30 Score=26.46 Aligned_cols=29 Identities=10% Similarity=0.046 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhhhcccCCCCCceEEEEeC
Q 004366 144 KKEAIQWAWEFSTVEFGLPANRLWISVYE 172 (759)
Q Consensus 144 K~eai~~awefLt~~l~l~~~rl~vTv~~ 172 (759)
|++-++-..+.|.+.||+|++++||.+.+
T Consensus 19 k~~l~~~l~~~l~~~lg~p~~~v~v~i~e 47 (63)
T 2x4k_A 19 LKNLVSEVTDAVEKTTGANRQAIHVVIEE 47 (63)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGCEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCcCcccEEEEEEE
Confidence 55566777788888999999999997753
No 57
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=25.71 E-value=1.2e+02 Score=25.21 Aligned_cols=46 Identities=11% Similarity=0.112 Sum_probs=36.9
Q ss_pred CCCChHHHHHHhhcCCCChhhHHHHHHHcCC----eeChhhHHHHHHHHH
Q 004366 438 PRLSGQDAFLLYDTFGFPVEITKEVAEEHGV----SVDMKGFDIEMENQR 483 (759)
Q Consensus 438 ~~l~g~~af~LydTyGfP~dlt~~ia~e~g~----~vd~~~F~~~~~~~r 483 (759)
..|+.+++-.+.-+.|+|.+.+.+|.++... .||.++|..+|....
T Consensus 24 G~I~~~el~~~l~~~g~~~~~~~~i~~~~D~d~dG~i~~~EF~~~~~~~~ 73 (92)
T 1fi6_A 24 GFIPGSAAKEFFTKSKLPILELSHIWELSDFDKDGALTLDEFCAAFHLVV 73 (92)
T ss_dssp CEEEHHHHHHHHHHHSSCHHHHHHHHHHHCTTCSSEEEHHHHHHHHHHHH
T ss_pred CcCcHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
Confidence 4799999999999999998888888776433 588889999886543
No 58
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain, POB1 EH domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=25.58 E-value=1e+02 Score=27.03 Aligned_cols=45 Identities=11% Similarity=0.066 Sum_probs=37.2
Q ss_pred CCCChHHHHHHhhcCCCChhhHHHHHHHcCC----eeChhhHHHHHHHH
Q 004366 438 PRLSGQDAFLLYDTFGFPVEITKEVAEEHGV----SVDMKGFDIEMENQ 482 (759)
Q Consensus 438 ~~l~g~~af~LydTyGfP~dlt~~ia~e~g~----~vd~~~F~~~~~~~ 482 (759)
..|+.+++-.+.-+.|++.+.+.+|.++... .||.++|..+|...
T Consensus 37 G~Is~~el~~~l~~~gl~~~el~~i~~~~D~d~dG~I~~~EF~~~m~~~ 85 (110)
T 1iq3_A 37 SFISGSVAKNFFTKSKLSIPELSYIWELSDADCDGALTLPEFCAAFHLI 85 (110)
T ss_dssp SEEEHHHHHHHCCSSSCSSCCHHHHHHHHCSSSCSEEEHHHHHHHHHHH
T ss_pred CeEcHHHHHHHHHHcCCCHHHHHHHHHHHcCCCCCcCcHHHHHHHHHHH
Confidence 3799999999999999998888888877433 58889999998654
No 59
>1apy_A Aspartylglucosaminidase; glycosylasparaginase, hydrolase; HET: NAG BMA; 2.00A {Homo sapiens} SCOP: d.153.1.5 PDB: 1apz_A*
Probab=24.76 E-value=92 Score=29.95 Aligned_cols=51 Identities=18% Similarity=0.445 Sum_probs=30.3
Q ss_pred HHHHHHHHHhhhcccCCCCCceEEEEeCChHHHHHHHHHhcCCCCCceeccCCCCCccCC---CCCCCCCCce
Q 004366 145 KEAIQWAWEFSTVEFGLPANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNS---GATGPCGPCS 214 (759)
Q Consensus 145 ~eai~~awefLt~~l~l~~~rl~vTv~~~D~e~~~iW~~~~g~~~~~I~~~~~~dNfW~~---G~~GpcGPcs 214 (759)
+-|-+||.+ .|++.+.| -.+++++.|++.. ++ ...-|||.- .++..|||..
T Consensus 107 ~GA~~fA~~-----~G~~~~~l------~t~~~~~~~~~~~---~~-----~~qpn~~~nv~p~~~~~cgpy~ 160 (162)
T 1apy_A 107 ESATTFAQS-----MGFINEDL------STSASQALHSDWL---AR-----NCQPNYWRNVIPDPSKYCGPYK 160 (162)
T ss_dssp HHHHHHHHH-----TTCCCCCC------CCHHHHHHHHHHH---HT-----TSCSCCBCSCBSCTTTCCSCCB
T ss_pred HHHHHHHHH-----cCCCcccc------CCHHHHHHHHHHH---Hh-----ccCCCccccCCCCCCCCCCCCC
Confidence 556667765 57776432 2567777776631 11 235699954 2356799853
No 60
>3h78_A PQS biosynthetic enzyme; PQSD, anthranilic acid, anthraniloyl-COA, transferase; HET: BE2; 1.70A {Pseudomonas aeruginosa PAO1} PDB: 3h76_A 3h77_A*
Probab=24.50 E-value=21 Score=38.24 Aligned_cols=75 Identities=12% Similarity=0.137 Sum_probs=49.8
Q ss_pred ccccccCCccCcccHHHHHHHHHHhhhcccCCCCCce-EEEEeCChHHHHHHHHHhcCCCCCceeccCCCCCccCCCCCC
Q 004366 130 FFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPANRL-WISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGATG 208 (759)
Q Consensus 130 fFEMlGn~SfgdYfK~eai~~awefLt~~l~l~~~rl-~vTv~~~D~e~~~iW~~~~g~~~~~I~~~~~~dNfW~~G~~G 208 (759)
+|.|.|...|.-+ -+.+.-+++=+.+..|++++.+ |+=.+....-..+-+.+.+|+|++++. |.+...|
T Consensus 240 ~~~m~g~~v~~~~--~~~~~~~i~~~L~~~gl~~~did~~v~Hq~n~~i~~~~~~~lgl~~ek~~--------~~l~~~G 309 (359)
T 3h78_A 240 EFLMRGRPMFEHA--SQTLVRIAGEMLAAHELTLDDIDHVICHQPNLRILDAVQEQLGIPQHKFA--------VTVDRLG 309 (359)
T ss_dssp SCEECHHHHHHHH--HHHHHHHHHHHHHHTTCCGGGCSEEEECCSCHHHHHHHHHHHTCCGGGBC--------CCHHHHC
T ss_pred ceEeccHHHHHHH--HHHHHHHHHHHHHHcCCCHHHCCEEEECCCCHHHHHHHHHHhCcCHHHhh--------hhhhccc
Confidence 5777776555321 2223334444444679999988 666788877777788888999999874 2334457
Q ss_pred CCCCce
Q 004366 209 PCGPCS 214 (759)
Q Consensus 209 pcGPcs 214 (759)
+||.+|
T Consensus 310 Nt~sAs 315 (359)
T 3h78_A 310 NMASAS 315 (359)
T ss_dssp BCGGGH
T ss_pred chHHHH
Confidence 888776
No 61
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=24.15 E-value=2.9e+02 Score=29.59 Aligned_cols=113 Identities=13% Similarity=0.104 Sum_probs=65.2
Q ss_pred hHHHHHHHHHHHhhCCCeeecCccCcCCCCccceeccccc-ccc-----------cccccc-----------------CC
Q 004366 50 GDSIRKRFLDFYASRGHKVLPSASLVPEDPTVLLTIAGML-QFK-----------PIFLGK-----------------VP 100 (759)
Q Consensus 50 ~~eiR~~Fl~fF~~~gH~~v~s~slvp~d~tllf~nAGm~-~fk-----------~~f~g~-----------------~~ 100 (759)
-..|.+.+.+.|.+.|+..|..-.+.|.+ +|.-+|-. .|. .+.|.. .+
T Consensus 33 ~~~i~~~~~~~~~~~G~~ei~tP~l~~~~---l~~~sG~~~~~~~em~~~d~~~~~~~LrP~~~~~~~~~~~~~~~s~~~ 109 (401)
T 1evl_A 33 FRELEVFVRSKLKEYQYQEVKGPFMMDRV---LWEKTGHWDNYKDAMFTTSSENREYCIKPMNCPGHVQIFNQGLKSYRD 109 (401)
T ss_dssp HHHHHHHHHHHHHHTTCEECBCCSEEEHH---HHHHHTHHHHSGGGCCEEEETTEEEEECSCSHHHHHHHHTSSCCBGGG
T ss_pred HHHHHHHHHHHHHHcCCEEEECCeeccHH---HHHhcCcHhhhchhhEeEecCCceEEEcCCCCHHHHHHHHhhhhhhhh
Confidence 45777888889999999999876666632 22212211 000 111111 01
Q ss_pred CCCCCcccccCcccCCCc-cccCCCCCcccccccccCCccCccc--H---HHHHHHHHHhhhcccCCCCCceEEE
Q 004366 101 RQVPRAATSQRCIRTNDV-ENVGRTSRHHTFFEMLGNFSFGDYF--K---KEAIQWAWEFSTVEFGLPANRLWIS 169 (759)
Q Consensus 101 p~~~r~~~~QkCiR~nDl-dnVG~t~rH~TfFEMlGn~SfgdYf--K---~eai~~awefLt~~l~l~~~rl~vT 169 (759)
-| -|+...++|.|---- +.-|.. |=+. |.|.+-++|++.- . +|.|..+++++. .|||++-++-+.
T Consensus 110 lP-~r~~~~g~~fR~E~~~p~~Gl~-R~re-F~q~d~~~f~~~~~~~~e~~e~i~~~~~~~~-~lgl~~~~~~~~ 180 (401)
T 1evl_A 110 LP-LRMAEFGSCHRNEPSGSLHGLM-RVRG-FTQDDAHIFCTEEQIRDEVNGCIRLVYDMYS-TFGFEKIVVKLS 180 (401)
T ss_dssp CS-EEEEEEEEEECCCCGGGCBTTT-BCSE-EEEEEEEEEECGGGHHHHHHHHHHHHHHHHH-TTTCSCCEEEEE
T ss_pred CC-hhhccccceecCCCCccccccc-ccCc-EEecceEEeCCHHHHHHHHHHHHHHHHHHHH-HcCCCceEEEEe
Confidence 12 256677888886322 233422 3333 6788889998621 1 146888899885 699976665444
No 62
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=23.88 E-value=42 Score=26.62 Aligned_cols=28 Identities=7% Similarity=0.046 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhhhcccCCCCCceEEEEe
Q 004366 144 KKEAIQWAWEFSTVEFGLPANRLWISVY 171 (759)
Q Consensus 144 K~eai~~awefLt~~l~l~~~rl~vTv~ 171 (759)
|++-++-..+.|.+.||+|++.+||.+.
T Consensus 19 K~~l~~~lt~~l~~~lg~p~~~v~V~i~ 46 (67)
T 3m21_A 19 KQQLIEGVSDLMVKVLNKNKASIVVIID 46 (67)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGCEEEEE
T ss_pred HHHHHHHHHHHHHHHHCcCcccEEEEEE
Confidence 6667777788888899999999999775
No 63
>4dfe_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; ssgcid, seattle structural genomics center for infectious DI transferase; 2.35A {Burkholderia xenovorans}
Probab=23.64 E-value=23 Score=37.16 Aligned_cols=75 Identities=17% Similarity=0.255 Sum_probs=50.3
Q ss_pred ccccccCCccCcccHHHHHHHHHHhhhcccCCCCCce-EEEEeCChHHHHHHHHHhcCCCCCceeccCCCCCccCCCCCC
Q 004366 130 FFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPANRL-WISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGATG 208 (759)
Q Consensus 130 fFEMlGn~SfgdYfK~eai~~awefLt~~l~l~~~rl-~vTv~~~D~e~~~iW~~~~g~~~~~I~~~~~~dNfW~~G~~G 208 (759)
++.|.|...|.-+ .+++.-+++-+.+..|++++.+ |+=.+....-..+-+.+.+|+|++++. |.+...|
T Consensus 220 ~~~~~g~~v~~~~--~~~~~~~i~~~l~~~gl~~~did~~~~Hq~~~~i~~~~~~~lgl~~~~~~--------~~l~~~G 289 (333)
T 4dfe_A 220 FLHMDGQAVFKLA--VNVLEKVAVEALEKANLSAEQIDWLIPHQANIRIMQSTCRKLGLPQERMI--------VTVGEHG 289 (333)
T ss_dssp SCEECHHHHHHHH--HHHHHHHHHHHHHHTTCCGGGCSEEEECCSCHHHHHHHHHHTTCCGGGBC--------CCHHHHC
T ss_pred ceeeccHHHHHHH--HHHHHHHHHHHHHHcCCCHHHCCEEEEcCCCHHHHHHHHHHhCCCHHHhh--------hhHHhcC
Confidence 5778877665321 2333333433444679999888 777888887777888888999999874 2233457
Q ss_pred CCCCce
Q 004366 209 PCGPCS 214 (759)
Q Consensus 209 pcGPcs 214 (759)
+||.+|
T Consensus 290 Nt~sas 295 (333)
T 4dfe_A 290 NTSAAS 295 (333)
T ss_dssp BCGGGH
T ss_pred chHHHH
Confidence 888776
No 64
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=23.49 E-value=30 Score=39.90 Aligned_cols=31 Identities=16% Similarity=0.195 Sum_probs=26.1
Q ss_pred CccCcccccchHHHHHHHHhCCCCcccccccH
Q 004366 259 LKQKNIDTGLGLERIARILQKVPNNYETDLIF 290 (759)
Q Consensus 259 Lp~k~IDTGmGlERl~~vlqg~~s~ydtd~F~ 290 (759)
+| +|=--|+|||||+++|-|.+|.=|+=.|.
T Consensus 525 ~P-PhgG~glGlDRLvmlltg~~sIRdVi~FP 555 (585)
T 1c0a_A 525 TP-PHAGLAFGLDRLTMLLTGTDNIRDVIAFP 555 (585)
T ss_dssp CC-CEEEEEEEHHHHHHHHHTCSCGGGGSSSC
T ss_pred CC-CceeEEEcHHHHHHHHcCCCcHHheecCC
Confidence 44 67778999999999999999998886663
No 65
>4i4d_A Peptide synthetase NRPS type II-PCP; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MLY; 2.10A {Streptomyces verticillus}
Probab=23.16 E-value=44 Score=28.20 Aligned_cols=24 Identities=25% Similarity=0.595 Sum_probs=19.0
Q ss_pred HHHHHHHhcCCCCCceeccCCCCCccCCC
Q 004366 177 AFEIWNKEVGVPVEHIKRMGADDNFWNSG 205 (759)
Q Consensus 177 ~~~iW~~~~g~~~~~I~~~~~~dNfW~~G 205 (759)
-.+||.+.+|++ . ++..+||+++|
T Consensus 21 l~~i~~~vL~~~--~---i~~~~~Ff~lG 44 (93)
T 4i4d_A 21 IAAIWAETLGRD--S---VGPHEDFAALG 44 (93)
T ss_dssp HHHHHHHHHTCS--C---CCTTCCTTTTT
T ss_pred HHHHHHHHhCCC--C---CCCCCCHHHcC
Confidence 367999999984 3 36689999988
No 66
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=23.12 E-value=31 Score=39.75 Aligned_cols=29 Identities=17% Similarity=0.204 Sum_probs=25.3
Q ss_pred CcccccchHHHHHHHHhCCCCcccccccH
Q 004366 262 KNIDTGLGLERIARILQKVPNNYETDLIF 290 (759)
Q Consensus 262 k~IDTGmGlERl~~vlqg~~s~ydtd~F~ 290 (759)
+|=--|+|||||+++|-|.+|.=|+=.|.
T Consensus 521 PhgG~glGlDRLvMll~g~~sIRdVi~FP 549 (580)
T 1l0w_A 521 PHGGIAWGLDRLLALMTGSPSIREVIAFP 549 (580)
T ss_dssp CEEEEEEEHHHHHHHHHTCSSGGGGSSSC
T ss_pred CCceEEEcHHHHHHHHcCCCcHHeEecCC
Confidence 67788999999999999999998876663
No 67
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=21.29 E-value=93 Score=33.32 Aligned_cols=28 Identities=14% Similarity=0.144 Sum_probs=23.5
Q ss_pred CcccccchHHHHHHHHhCCCCccccccc
Q 004366 262 KNIDTGLGLERIARILQKVPNNYETDLI 289 (759)
Q Consensus 262 k~IDTGmGlERl~~vlqg~~s~ydtd~F 289 (759)
+|=--|+|+|||++++-|.+|.=|+=+|
T Consensus 313 PhgG~glGiDRLvmll~g~~~IRdVi~F 340 (345)
T 3a5y_A 313 DCSGVALGVDRLVMLALGAETLAEVIAF 340 (345)
T ss_dssp SEEEEEEEHHHHHHHHHTCSSGGGGSSS
T ss_pred CCcEEEEcHHHHHHHHcCCCcHheEecC
Confidence 5556699999999999999998777555
No 68
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes}
Probab=20.62 E-value=54 Score=25.75 Aligned_cols=29 Identities=10% Similarity=-0.047 Sum_probs=24.2
Q ss_pred cHHHHHHHHHHhhhcccCCCCCceEEEEe
Q 004366 143 FKKEAIQWAWEFSTVEFGLPANRLWISVY 171 (759)
Q Consensus 143 fK~eai~~awefLt~~l~l~~~rl~vTv~ 171 (759)
-|++-++-..+.|.+.||+|++.+||.+.
T Consensus 15 qk~~L~~~it~~~~~~lg~p~~~v~V~i~ 43 (65)
T 3ry0_A 15 EVAALGEALTAAAHETLGTPVEAVRVIVE 43 (65)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGCEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCcCcccEEEEEE
Confidence 36777777788888899999999999774
No 69
>2zc2_A DNAD-like replication protein; GI 24377835, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Streptococcus mutans UA159}
Probab=20.48 E-value=70 Score=26.30 Aligned_cols=27 Identities=11% Similarity=-0.044 Sum_probs=21.0
Q ss_pred CCChHH---HHHHhhcCCCChhhHHHHHHH
Q 004366 439 RLSGQD---AFLLYDTFGFPVEITKEVAEE 465 (759)
Q Consensus 439 ~l~g~~---af~LydTyGfP~dlt~~ia~e 465 (759)
.+++-+ .-.++|.||||.|++.+.++.
T Consensus 17 ~ls~~e~~~i~~w~~~~~~~~elI~~A~~~ 46 (78)
T 2zc2_A 17 MLSPFELEDLQKTVSDDKTDPDLVRSALRE 46 (78)
T ss_dssp CCCHHHHHHHHHHHTTTCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 455544 458899999999999988766
Done!