RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 004366
(759 letters)
>gnl|CDD|215487 PLN02900, PLN02900, alanyl-tRNA synthetase.
Length = 936
Score = 1063 bits (2750), Expect = 0.0
Identities = 339/711 (47%), Positives = 462/711 (64%), Gaps = 51/711 (7%)
Query: 39 VEDKSQDFPSSGDSIRKRFLDFYASRGHKVLPSASLVP-EDPTVLLTIAGMLQFKPIFLG 97
ED + + GD IR+ FL F+ S+GH LPS+ LVP +DPT+L T AGM QFKPIFLG
Sbjct: 2 PEDDAPEKEWPGDRIRRTFLSFFESKGHTFLPSSPLVPVDDPTLLFTNAGMNQFKPIFLG 61
Query: 98 KV-----PRQVPRAATSQRCIRT----NDVENVGRTSRHHTFFEMLGNFSFGDYFKKEAI 148
R++PRA +Q+CIR ND+++VG+ + HHTFFEMLGN+SFGDYFKKEAI
Sbjct: 62 TADPNTPLRKLPRATNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAI 121
Query: 149 QWAWEFSTVEFGLPANRLWISVYEDDD------EAFEIWNKEVGVPVEHIKRMGADDNFW 202
WAWE T +GLPA+RL+ + + D+ EA IW + P E + G DNFW
Sbjct: 122 GWAWELLTKVYGLPADRLYATYFGGDEKQAPDDEARAIWLDYL--PEERVLPFGCKDNFW 179
Query: 203 NSGATGPCGPCSEIYYDFHPDRGCSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQK 262
G TGPCGPCSEI+YD +R +D+ DD RFIE +NLVF+Q+N++ DGSL+PL K
Sbjct: 180 EMGDTGPCGPCSEIHYDRIGERDAADLVNNDDPRFIEIWNLVFIQFNREADGSLKPLPAK 239
Query: 263 NIDTGLGLERIARILQKVPNNYETDLIFPIIKKASE------LANVSYAQSNDRTNLNLK 316
++DTG+GLER+A ILQ P+NY+TDL PI E A A+ +DR ++ +
Sbjct: 240 HVDTGMGLERLASILQNKPSNYDTDLFMPIFDAIQEATGARPYAGKVGAEDDDRVDMAYR 299
Query: 317 IIGDHLRAIVYLLSDGVFPSNIGRGYVVRRLIRRAVRTGRLLGIKGDGRGNLEGAFLPSI 376
++ DH+R + + ++DGV PSN GRGYV+RRL+RRAVR GRLL E F P++
Sbjct: 300 VVADHIRTLSFAIADGVVPSNEGRGYVLRRLLRRAVRYGRLL-------LGAEEGFFPAL 352
Query: 377 AEKAIELSTHIDSDVKAREQRILEELKREELRFVQTLERGEKLLDQMLADALSRTRESGS 436
E +ELS + +VK E+RI E + EEL F +TLE+G + + LA A +
Sbjct: 353 VEVVVELSGDVFPEVKKNEKRITEIIAEEELSFGKTLEKGIEKFKKALAAAKANGG---- 408
Query: 437 VPRLSGQDAFLLYDTFGFPVEITKEVAEEHGVSVDMKGFDIEMENQRRQSQAAHN----- 491
P LSG+DAFLLYDT+GFPV++T+ +AEE GV+VDM+GF+ ME R +S+AAH
Sbjct: 409 -PVLSGKDAFLLYDTYGFPVDLTELMAEERGVTVDMEGFEAAMEEARERSRAAHLKAGGG 467
Query: 492 AVKLSVDDSADLAEK--IPDTEFLGYDTLS-AKAIVESLLVNGKPVIKVSKGSDVEVLLN 548
A++L+ + ++ L ++ +FL YD LS +A+V+++L G V VS+G +V ++L+
Sbjct: 468 AIELAAEATSWLQKQGVAATDDFLKYDWLSDHEAVVKAILTGGGFVESVSEGDEVGIVLD 527
Query: 549 RTPFYAESGGQIGDYGFLYVTQGTNQQTAVVEVKDVKKSLGSVFVHKGTIREGVLEVGRE 608
+T FYAESGGQIGD G L + G AVVEV DV+K+ G +H GT+ EG + VG
Sbjct: 528 KTSFYAESGGQIGDTGVLEGSGG-----AVVEVSDVQKA-GGFVLHIGTVTEGSVSVGDA 581
Query: 609 VEAIVDPKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLDT 668
V VD R+R +HTATHLL +ALK+V+G Q GSLVAF++LRFDF+ +P+
Sbjct: 582 VTCKVDYDRRRRIAPNHTATHLLNSALKEVLGDHVDQKGSLVAFEKLRFDFSHGKPMTPE 641
Query: 669 ELEEIERLINGWIGDANLLQTKVMALDDAKR-AGAIAMFGEKYGEQVKISS 718
EL E+E L+N WIGDA ++ K M L DAKR G A+FGEKY + V++ S
Sbjct: 642 ELREVESLVNEWIGDALPVEAKEMPLADAKRINGLRAVFGEKYPDPVRVVS 692
>gnl|CDD|234701 PRK00252, alaS, alanyl-tRNA synthetase; Reviewed.
Length = 865
Score = 1019 bits (2638), Expect = 0.0
Identities = 340/669 (50%), Positives = 459/669 (68%), Gaps = 32/669 (4%)
Query: 49 SGDSIRKRFLDFYASRGHKVLPSASLVP-EDPTVLLTIAGMLQFKPIFLGKVPRQVPRAA 107
+ IR++FLDF+ S+GH V+PSASLVP DPT+L T AGM+QFK FLG+ PRA
Sbjct: 3 TSAEIRQKFLDFFESKGHTVVPSASLVPKNDPTLLFTNAGMVQFKDYFLGQEKPPYPRAT 62
Query: 108 TSQRCIRTNDVENVGRTSRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPANRLW 167
TSQ+CIRTND+ENVG T+RHHTFFEMLGNFSFGDYFK+EAI+WAWE T GLP +L+
Sbjct: 63 TSQKCIRTNDLENVGYTARHHTFFEMLGNFSFGDYFKEEAIEWAWELLTSVLGLPKEKLY 122
Query: 168 ISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGATGPCGPCSEIYYDFHPDRGCS 227
++VYEDDDEA++IW KE+GVP E I R+G DNFW+ G TGPCGPCSEI+YD +
Sbjct: 123 VTVYEDDDEAYDIWKKEIGVPPERIIRIGKKDNFWSMGDTGPCGPCSEIFYDRGEEYWGG 182
Query: 228 --DVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERIARILQKVPNNYE 285
D R+IE +NLVFMQ+N+ +DG+L PL +KNIDTG+GLERIA +LQ V +NYE
Sbjct: 183 PPGSPEEDGDRYIEIWNLVFMQFNRDEDGNLTPLPKKNIDTGMGLERIAAVLQGVHSNYE 242
Query: 286 TDLIFPIIKKASELANVSYAQSNDRTNLNLKIIGDHLRAIVYLLSDGVFPSNIGRGYVVR 345
TDL P+IK EL V Y +++ ++I DH+RA+ +L++DGV PSN GRGYV+R
Sbjct: 243 TDLFRPLIKAIEELTGVKY-----EDDVSFRVIADHIRAVAFLIADGVLPSNEGRGYVLR 297
Query: 346 RLIRRAVRTGRLLGIKGDGRGNLEGAFLPSIAEKAIELSTHIDSDVKAREQRILEELKRE 405
R++RRAVR GRLLGIK FL + I+ ++K ++ I + LK E
Sbjct: 298 RILRRAVRHGRLLGIK--------EPFLYKLVPVVIDEMGDAYPELKEKQDLIEKVLKAE 349
Query: 406 ELRFVQTLERGEKLLDQMLADALSRTRESGSVPRLSGQDAFLLYDTFGFPVEITKEVAEE 465
E RF++TLERG KLL++ LA + LSG+DAF LYDT+GFP+++T E+A E
Sbjct: 350 EERFLKTLERGLKLLEEALAKLKAGK-------VLSGEDAFKLYDTYGFPLDLTAEIARE 402
Query: 466 HGVSVDMKGFDIEMENQRRQSQAAHNAVKLSVDDSADLAEKIPDTEFLGYDTLSAKAIVE 525
G++VD +GF+ ME QR +++AA K + +L + + TEF+GYDTL A+A V
Sbjct: 403 RGLTVDEEGFEAAMEEQRERARAAR-KFKGDYNALEELLDDLA-TEFVGYDTLEAEAKVL 460
Query: 526 SLLVNGKPVIKVSKGSDVEVLLNRTPFYAESGGQIGDYGFLYVTQGTNQQTAVVEVKDVK 585
+L V+G+ V G +VEV+L++TPFYAESGGQ+GD G + V EV D +
Sbjct: 461 ALFVDGESVDSAKAGEEVEVVLDKTPFYAESGGQVGDTGVIE-------DGGVFEVTDTQ 513
Query: 586 KSLGSVFVHKGTIREGVLEVGREVEAIVDPKLRQRAKVHHTATHLLQAALKKVIGQETSQ 645
K + VH+G + EG L+VG EV A VD + R+ +H+ATHLL AAL++V+G+ +Q
Sbjct: 514 KPPNGLIVHRGKVEEGELKVGDEVTAEVDEERRRAIARNHSATHLLHAALREVLGEHVTQ 573
Query: 646 AGSLVAFDRLRFDFNFHRPLLDTELEEIERLINGWIGDANLLQTKVMALDDAKRAGAIAM 705
AGSLVA DRLRFDF+ L EL +IE L+N I + ++T+ M++++AK+ GA+A+
Sbjct: 574 AGSLVAPDRLRFDFSHFEALTPEELRKIEDLVNEKIRENLPVETEEMSIEEAKKMGAMAL 633
Query: 706 FGEKYGEQV 714
FGEKYG++V
Sbjct: 634 FGEKYGDEV 642
>gnl|CDD|223092 COG0013, AlaS, Alanyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 879
Score = 881 bits (2279), Expect = 0.0
Identities = 338/674 (50%), Positives = 456/674 (67%), Gaps = 28/674 (4%)
Query: 49 SGDSIRKRFLDFYASRGHKVLPSASLVPE-DPTVLLTIAGMLQFKPIFLGKVPRQVPRAA 107
+ + IR++FLDF+ +GH V+PS+ LVP DPT+L T AGM+QFKP F G V RA
Sbjct: 7 TTNEIRQKFLDFFEKKGHTVVPSSPLVPRNDPTLLFTNAGMVQFKPYFTGGVTPPANRAV 66
Query: 108 TSQRCIRTNDVENVGRTSRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPANRLW 167
TSQ+CIRTND++NVG T+RHHTFFEMLGNFSFGDYFK+EAI++AWEF T GLP +L+
Sbjct: 67 TSQKCIRTNDIDNVGYTARHHTFFEMLGNFSFGDYFKEEAIEFAWEFLTKVLGLPKEKLY 126
Query: 168 ISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGATGPCGPCSEIYYDFHPDRGCS 227
++VYEDDDEA+ W K +G+P E I R+GA DNFW GPCGPCSEI+YD + G
Sbjct: 127 VTVYEDDDEAYNEWEKIIGIPPERIIRIGASDNFW-EMGDGPCGPCSEIFYDRGEEIGGG 185
Query: 228 DVDL--GDDTRFIEFYNLVFMQYNKKD-DGSLEPLKQKNIDTGLGLERIARILQKVPNNY 284
D R++E +NLVFMQYN+ DG+ PL +KNIDTG+GLERIA +LQ VP NY
Sbjct: 186 PPGSPDEDGDRYLEIWNLVFMQYNRDPGDGNYTPLPKKNIDTGMGLERIAAVLQGVPTNY 245
Query: 285 ETDLIFPIIKKASELANVSYAQSNDRTNLNLKIIGDHLRAIVYLLSDGVFPSNIGRGYVV 344
+TDL PIIK +L Y + + +++ ++I DH+R++ ++++DGV PSN GRGYV+
Sbjct: 246 DTDLFRPIIKAIEKLTGKKYGEDEEDPDVSFRVIADHIRSLAFMIADGVLPSNEGRGYVL 305
Query: 345 RRLIRRAVRTGRLLGIKGDGRGNLEGAFLPSIAEKAIELSTHIDSDVKAREQRILEELKR 404
RR+IRRA+R G+LLGIK FL + + I+ ++K +E I E LK
Sbjct: 306 RRIIRRALRHGKLLGIK--------EPFLYKLVDTVIDEMGDAYPELKEKEDFIKEVLKL 357
Query: 405 EELRFVQTLERGEKLLDQMLADALSRTRESGSVPRLSGQDAFLLYDTFGFPVEITKEVAE 464
EE RF +TLERG KLL++ LA L G+DAF LYDT+GFPVE+T+E+AE
Sbjct: 358 EEERFAKTLERGLKLLEKELAKLKKSK-------TLDGEDAFKLYDTYGFPVELTEEIAE 410
Query: 465 EHGVSVDMKGFDIEMENQRRQSQAAHNAVKLSVDDSADLA--EKIPDTEFLGYDTLSAKA 522
E G+ VD GF+ ME QR +++ A +S DL +K+P+TEFLGYD L +
Sbjct: 411 ERGLKVDEPGFEYAMEAQRERAR-ASAGSGEGAKESEDLELIDKLPETEFLGYDDLEMEF 469
Query: 523 IVESLLVNGKPVIKVSKGSDVEVLLNRTPFYAESGGQIGDYGFLYVTQGTNQQTAVVEVK 582
V L V+GK V ++++G +V V+L++TPFYAESGGQ+GD G+++ G EV
Sbjct: 470 KVLVLFVDGKEVSELNEGQEVYVVLDQTPFYAESGGQVGDTGYIFGDGG-----GRFEVT 524
Query: 583 DVKKSLGSVFVHKGTIREGVLEVGREVEAIVDPKLRQRAKVHHTATHLLQAALKKVIGQE 642
DV+K V VHKG + G L+VG EV A VD + R+R +HTATHLL AAL+KV+G
Sbjct: 525 DVQKVGNGVIVHKGKVESGELKVGDEVTAEVDEERRRRLMRNHTATHLLHAALRKVLGDH 584
Query: 643 TSQAGSLVAFDRLRFDFNFHRPLLDTELEEIERLINGWIGDANLLQTKVMALDDAKRAGA 702
QAGSLV ++LRFDF+ ++ L EL+EIERL+N I + ++T+ M LD+AK GA
Sbjct: 585 VWQAGSLVDPEKLRFDFSHYKALTAEELKEIERLVNEIIRENLPVKTEEMDLDEAKAKGA 644
Query: 703 IAMFGEKYGEQVKI 716
+A+FGEKYG++V++
Sbjct: 645 MALFGEKYGDEVRV 658
>gnl|CDD|232931 TIGR00344, alaS, alanine--tRNA ligase. The model describes
alanine--tRNA ligase. This enzyme catalyzes the reaction
(tRNAala + L-alanine + ATP = L-alanyl-tRNAala +
pyrophosphate + AMP) [Protein synthesis, tRNA
aminoacylation].
Length = 851
Score = 788 bits (2037), Expect = 0.0
Identities = 330/677 (48%), Positives = 437/677 (64%), Gaps = 40/677 (5%)
Query: 53 IRKRFLDFYASRGHKVLPSASLVP-EDPTVLLTIAGMLQFKPIFLGKVPRQVPRAATSQR 111
IR+ FLDF+ +GH+V+PSASLVP DPT+LLT AGM QFKPIF G V R +Q
Sbjct: 2 IRQTFLDFFKEKGHQVIPSASLVPRNDPTLLLTNAGMAQFKPIFTGIVKPPSNRLVNAQP 61
Query: 112 CIRTNDVENVGRTSRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPANRLWISVY 171
CIR ND+ENVGRT+RHHTFFEMLGNFSFGDYFK+EAI +AWE T GL RL+++VY
Sbjct: 62 CIRLNDIENVGRTARHHTFFEMLGNFSFGDYFKEEAIAFAWELLTSVLGLDKERLYVTVY 121
Query: 172 EDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGATGPCGPCSEIYYD----FHPDRGCS 227
EDD+EA+EIW K G+P E I R G DNFW+ G GPCGPC+EIYYD G
Sbjct: 122 EDDEEAYEIWEK-HGIPAERIIRCGDKDNFWDMG-DGPCGPCTEIYYDRGEFVGGKPGEP 179
Query: 228 DVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERIARILQKVPNNYETD 287
+ ++ R++E +NLVFMQ+N+ DG+ PL +KNIDTG+GLER +LQ VP NY+TD
Sbjct: 180 EFF-EENDRYVEVWNLVFMQFNRDPDGNYTPLPKKNIDTGMGLERFVAVLQGVPTNYDTD 238
Query: 288 LIFPIIKKASELANVSYAQSNDRTNLN--------LKIIGDHLRAIVYLLSDGVFPSNIG 339
+ P+I+K E+ V Y +N L++I DH RA+ ++L+DGV PSN G
Sbjct: 239 IFLPLIEKIEEITGVKYDSNNAGIMDEKRVEDLRSLRVIADHTRALAFMLADGVVPSNEG 298
Query: 340 RGYVVRRLIRRAVRTGRLLGIKGDGRGNLEGAFLPSIAEKAIELSTHIDSDVKAREQRIL 399
RGYV+RRLIRRA+R G+ LG+K AFL + IE+ ++K +++ +
Sbjct: 299 RGYVLRRLIRRALRHGKKLGLK--------EAFLYKLVPTLIEVLGDYYPELKEKQEFVE 350
Query: 400 EELKREELRFVQTLERGEKLLDQMLADALSRTRESGSVPRLSGQDAFLLYDTFGFPVEIT 459
+ L+ EE RF +TLERG +L +++L + L G+DAF LYDT+GFPVE+T
Sbjct: 351 QILELEEERFAKTLERGLRLFEKLLKKLGKKE--------LDGEDAFKLYDTYGFPVELT 402
Query: 460 KEVAEEHGVSVDMKGFDIEMENQRRQSQAAHNAVKLSVDDSADLAEKIPDTEFLGYDTLS 519
KE+AEE G++VD+ GF+ M QR +S+AA + + + A LA P TEFLGY+ L
Sbjct: 403 KEIAEERGLTVDIPGFETLMAEQRERSKAASQTISFELQEIA-LANVYPATEFLGYEDLE 461
Query: 520 AKAIVESLLVNGKPVIKVSKGSDVEVLLNRTPFYAESGGQIGDYGFLYVTQGTNQQTAVV 579
+A V L +GKPV + G V V+L++TPFYAESGGQIGD G+L
Sbjct: 462 FEAKVIGLFEDGKPVDEAEAGQSVYVILDQTPFYAESGGQIGDTGYL------IANDGKF 515
Query: 580 EVKDVKKSLGSVFVHKGTIREGVLEVGREVEAIVDPKLRQRAKVHHTATHLLQAALKKVI 639
V DV+K V H G + G L+VG +V A++D K R R +H+ATHLL AAL+KV+
Sbjct: 516 RVVDVQKP-NGVVFHFGEVEGGSLKVGDKVIAVIDEKRRLRIMRNHSATHLLHAALQKVL 574
Query: 640 GQETSQAGSLVAFDRLRFDFNFHRPLLDTELEEIERLINGWIGDANLLQTKVMALDDAKR 699
G QAGSLV+ +LRFDF+ +R L ELE+IE L+N I ++ M LD+AK
Sbjct: 575 GNHVWQAGSLVSVKKLRFDFSHYRALTREELEKIEDLVNEQILANIPIKVIFMDLDEAKA 634
Query: 700 AGAIAMFGEKYGEQVKI 716
GA A+FGEKYGE+V++
Sbjct: 635 KGAFALFGEKYGEKVRV 651
>gnl|CDD|216484 pfam01411, tRNA-synt_2c, tRNA synthetases class II (A). Other tRNA
synthetase sub-families are too dissimilar to be
included. This family includes only alanyl-tRNA
synthetases.
Length = 551
Score = 691 bits (1786), Expect = 0.0
Identities = 279/573 (48%), Positives = 368/573 (64%), Gaps = 33/573 (5%)
Query: 53 IRKRFLDFYASRGHKVLPSASLVPE-DPTVLLTIAGMLQFKPIFLGKVP-RQVPRAATSQ 110
IR+ FLDF+ +GH V+PS+ +VP DPT+L T AGM QFKPIFLG RA SQ
Sbjct: 2 IRQTFLDFFEKKGHTVVPSSPVVPRNDPTLLFTNAGMNQFKPIFLGGEAKPPYNRAVNSQ 61
Query: 111 RCIRT----NDVENVGRTSRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPANRL 166
+CIR ND+ENVGRT+RHHTFFEMLGNFSFGDYFK+EAI++AWE T GL RL
Sbjct: 62 KCIRAGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKEEAIEFAWELLTKVLGLDPERL 121
Query: 167 WISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGATGPCGPCSEIYYDFHPDRGC 226
+++VYE DDEA IW K VG+P E I R G DNFW G TGPCGPCSEI YD + G
Sbjct: 122 YVTVYEWDDEAGPIWEKIVGIPEERILRFGDKDNFWEMGDTGPCGPCSEIDYDRGEEIGG 181
Query: 227 SDV---DLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERIARILQKVPNN 283
DD RF+E +NLVFMQ+N++ DG+L+PL +K+IDTG+GLER+ +LQ V +N
Sbjct: 182 WPSGGPPTADDDRFLEIWNLVFMQFNRESDGTLKPLPKKSIDTGMGLERLVAVLQNVRSN 241
Query: 284 YETDLIFPIIKKASELANVSYAQSNDRTNLNLKIIGDHLRAIVYLLSDGVFPSNIGRGYV 343
Y+TDL P+I+ E++ Y + D T+ ++I DH RA+ + ++DGV PSN GRGYV
Sbjct: 242 YDTDLFIPLIELIEEISGAKYY-TKDETDEAYRVIADHTRALTFAIADGVVPSNEGRGYV 300
Query: 344 VRRLIRRAVRTGRLLGIKGDGRGNLEGAFLPSIAEKAIELSTHIDSDVKAREQRILEELK 403
+RR++RRAVR + LG+K FL + IE ++K +E I E L+
Sbjct: 301 LRRILRRAVRHAKKLGLK--------EPFLYKLVPTVIEEMGDAYPELKEKEDTIQEILE 352
Query: 404 REELRFVQTLERGEKLLDQMLADALSRTRESGSVPRLSGQDAFLLYDTFGFPVEITKEVA 463
EE RF +TLERG +LL++++ L G+DAF LYDT+GFPV++T+E+A
Sbjct: 353 LEEERFAKTLERGLRLLERLIKSLKKSK-------TLPGEDAFKLYDTYGFPVDLTQEIA 405
Query: 464 EEHGVSVDMKGFDIEMENQRRQSQAAHNAVKLSVDDSADLAEKIPDTEFLGYDTLSAKAI 523
EE G++VDM GF+ M QR +S+ A +D SA L E +EFLGYD L A+A
Sbjct: 406 EERGLTVDMPGFEKAMVEQRERSKQAVKEKGEELDVSA-LVELPATSEFLGYDDLEAEAK 464
Query: 524 VESLLVNGKPVIKVSKGSDVEVLLNRTPFYAESGGQIGDYGFLYVTQGTNQQTAVVEVKD 583
+ +L +G+ V +V +G + V+L+RTPFYAESGGQIGD G++ G V D
Sbjct: 465 ILALFKDGEFVAEVLEGQEGGVILDRTPFYAESGGQIGDTGYIIGEGGE------FRVTD 518
Query: 584 VKKSLGSVFVHKGTIREGVLEVGREVEAIVDPK 616
V+K G V VHKG + G L+VG V A+VD
Sbjct: 519 VQKY-GGVVVHKGKLESGSLKVGDTVIAVVDED 550
>gnl|CDD|238360 cd00673, AlaRS_core, Alanyl-tRNA synthetase (AlaRS) class II core
catalytic domain. AlaRS is a homodimer. It is
responsible for the attachment of alanine to the 3' OH
group of ribose of the appropriate tRNA. This domain is
primarily responsible for ATP-dependent formation of the
enzyme bound aminoacyl-adenylate. Class II assignment is
based upon its predicted structure and the presence of
three characteristic sequence motifs.
Length = 232
Score = 387 bits (997), Expect = e-131
Identities = 128/231 (55%), Positives = 166/231 (71%), Gaps = 1/231 (0%)
Query: 51 DSIRKRFLDFYASRGHKVLPSASLVP-EDPTVLLTIAGMLQFKPIFLGKVPRQVPRAATS 109
IR+ FL F+ +GH +PS+ +VP +DPT+L T AGM QFKPIFLG+VP R S
Sbjct: 2 SEIRETFLSFFEKKGHTRVPSSPVVPRDDPTLLFTNAGMNQFKPIFLGEVPPPANRLVNS 61
Query: 110 QRCIRTNDVENVGRTSRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPANRLWIS 169
Q+CIR D++NVG+T RHHTFFEMLGNFSFGDYFK+EAI +AWE T GLP +RL++S
Sbjct: 62 QKCIRAGDIDNVGKTGRHHTFFEMLGNFSFGDYFKEEAIAFAWELLTEVLGLPKDRLYVS 121
Query: 170 VYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGATGPCGPCSEIYYDFHPDRGCSDV 229
V+E DDE IW ++G+P I+R+G DNFW G GPCGPCSEI+YD +R + +
Sbjct: 122 VFEGDDEEEAIWWWKIGLPGIRIERIGFKDNFWEMGGNGPCGPCSEIFYDRGEERDAASL 181
Query: 230 DLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERIARILQKV 280
DD R++E +NLVFMQYN+ DG+ PL +K +DTG+GLER+ +LQ V
Sbjct: 182 PNEDDDRYLEIWNLVFMQYNRDADGTYRPLPKKIVDTGMGLERLVWVLQGV 232
>gnl|CDD|234962 PRK01584, PRK01584, alanyl-tRNA synthetase; Provisional.
Length = 594
Score = 379 bits (976), Expect = e-122
Identities = 173/451 (38%), Positives = 270/451 (59%), Gaps = 31/451 (6%)
Query: 51 DSIRKRFLDFYASRGHKVLPSASLVPE-DPTVLLTIAGMLQFKPIFLGKVPRQVPRAATS 109
D +RK+++DF+ S+GH + SL+PE DPTVL T AGM P LG+ R
Sbjct: 4 DELRKKYIDFFKSKGHVEIAGKSLIPENDPTVLFTTAGMHPLVPYLLGEPHPSGTRLVDV 63
Query: 110 QRCIRTNDVENVGRTSRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVE--FGLPANRLW 167
Q+C+RT D++ VG S H TFFEMLGN+S G YFK+E+I++++EF T +P ++L+
Sbjct: 64 QKCLRTGDIDEVGDLS-HLTFFEMLGNWSLGAYFKEESIKYSFEFLTSPDYLNIPKDKLY 122
Query: 168 ISVYEDDD------EAFEIWNKEVGVPVEHIKRMGADDNFWN-SGATGPCGPCSEIYYDF 220
++V+E D+ E +W + +G+P + I + + N+W G TGPCGP +EI+ D
Sbjct: 123 VTVFEGDEEIPRDEETASVW-ESLGIPKDRIFYLSREHNWWGPVGETGPCGPDTEIFVDT 181
Query: 221 HPDRGCSDVDLGDDT-RFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERIARILQK 279
+ + ++ E +N VFMQYNK +DG+ E LK+K +DTG+G+ER LQ
Sbjct: 182 GKPKCSVNCRPTCSCGKYFEIWNNVFMQYNKDEDGNYEELKRKCVDTGMGIERTIAFLQG 241
Query: 280 VPNNYETDLIFPIIKKASELANVSYAQSNDRTNLNLKIIGDHLRAIVYLLSD--GVFPSN 337
+ Y+T+ PIIK+ +++ Y Q N+ + +++II DH+RA ++L D V PSN
Sbjct: 242 KSSVYDTEAFTPIIKRIEKISGKIYGQ-NEEDDRSIRIIADHIRAACFILGDPFVVLPSN 300
Query: 338 IGRGYVVRRLIRRAVRTGRLLGIKGDGRGNLEGAFLPSIAEKAIELSTHIDSDVKAREQR 397
+G+GYV+RRLIRR++R + LGI E FL + + E+ ++ ++
Sbjct: 301 VGQGYVLRRLIRRSIRHAKKLGI--------ESHFLADLVDSVEEIYGSFYPELTEKKDF 352
Query: 398 ILEELKREELRFVQTLERGEKLLDQMLADALSRTRESGSVPRLSGQDAFLLYDTFGFPVE 457
I EEL +EE +F +TL +GE+ +++ + S S +P G AF LYDT+GFP E
Sbjct: 353 IKEELNKEEEKFFKTLRKGEQEFIKLIPNLGS----SKIIP---GDIAFKLYDTYGFPYE 405
Query: 458 ITKEVAEEHGVSVDMKGFDIEMENQRRQSQA 488
IT+E+A E+G +VD +GFD + ++ S+
Sbjct: 406 ITEELASEYGFTVDREGFDEHFKKHQKVSKK 436
Score = 106 bits (267), Expect = 6e-24
Identities = 39/92 (42%), Positives = 63/92 (68%)
Query: 625 HTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLDTELEEIERLINGWIGDA 684
HTATHLL AL+ V+G Q GS + +RLRFDF+ + D E++++E ++N I +
Sbjct: 457 HTATHLLHKALRLVLGDHVRQKGSNITAERLRFDFSHPEKMTDDEIKKVEDIVNLQIKND 516
Query: 685 NLLQTKVMALDDAKRAGAIAMFGEKYGEQVKI 716
++ +VM+L++A+ GA+A+FGEKY + VK+
Sbjct: 517 LSVKKEVMSLEEAREKGAMALFGEKYEDIVKV 548
>gnl|CDD|237551 PRK13902, alaS, alanyl-tRNA synthetase; Provisional.
Length = 900
Score = 310 bits (796), Expect = 4e-93
Identities = 204/689 (29%), Positives = 306/689 (44%), Gaps = 165/689 (23%)
Query: 51 DSIRKRFLDFYASRGHKVLPSASLVP---EDPTVLLTIAGMLQFKP-IFLGKVPRQVPRA 106
+R++FL F+ GH + +V +D V LTIA + F+P + G VP P A
Sbjct: 62 KEMREKFLSFFEKHGHTRIERYPVVARWRDD--VYLTIASIYDFQPWVTSGLVP---PPA 116
Query: 107 ---ATSQRCIRTNDVENVGRTSRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPA 163
SQ CIR ND++NVGRT RH T FEM+ + +F +Y KE + W E TVE+
Sbjct: 117 NPLVISQPCIRLNDIDNVGRTGRHLTSFEMMAHHAF-NYPDKE-VYWKDE--TVEY---- 168
Query: 164 NRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNF----WNSGATGPCGPCSEIYYD 219
FE + KE+G+ E I F W G G GPC E+
Sbjct: 169 -------------CFEFFTKELGIDPEEI-------TFKESWWEGG--GNAGPCFEVLV- 205
Query: 220 FHPDRGCSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERIARILQK 279
RG +E LVFMQY KKD + K +DTG GLERIA Q
Sbjct: 206 ----RG------------LELATLVFMQY-KKDGNRYVEMPLKIVDTGYGLERIAWASQG 248
Query: 280 VPNNYETDLIFP------------------IIKKASELA-----------NVSYAQSNDR 310
P Y+ IF I+ +A+ LA + +
Sbjct: 249 TPTAYDA--IFGELVDKLKENAGVEEPDEEILAEAARLAGLMDIEEIEDLRSLRQKVAKK 306
Query: 311 TNLNLK-------------IIGDHLRAIVYLLSDGVFPSNIGRGYVVRRLIRRAVRTGRL 357
++++ I DH R + ++L DG+ PSN+G GY+ R +IRR +R
Sbjct: 307 LGIDVEELEELLEPLEAIYAIADHTRTLAFMLGDGIVPSNVGEGYLARLVIRRTLRLLDE 366
Query: 358 LGIKGDGRGNLEGAFLPSIAEKAIELSTHIDSDVKAREQRILEELKREELRFVQTLERGE 417
LG+ L + + I+ ++K IL+ + EE ++ +TLERG+
Sbjct: 367 LGLDVP---------LSELVDMQIDELKEDYPELKENRDYILDIVDLEEEKYRETLERGK 417
Query: 418 KLLDQMLADALSRTRESGSVPRLSGQDAFLLYDTFGFPVEITKEVAEEHGVSVDMKGFDI 477
++++++ ++ +P D LYD+ G P EI KE+A++ GV V++
Sbjct: 418 RIVERLA-------KKKEEIPL---DDLIELYDSHGIPPEIVKEIAKKKGVEVEVP---- 463
Query: 478 EMEN-----QRRQSQAAHNAVKLSVDDSADLAEKIPDTEFLGYDT---LSAKAIVESLLV 529
+N R +A + V+ + + +P+TE L Y+ +A V L V
Sbjct: 464 --DNFYSLVAERHEKAEEEEEEPVVE--EERLKDLPETEKLFYEDPYMREFEAKV--LGV 517
Query: 530 NGKPVIKVSKGSDVEVLLNRTPFYAESGGQIGDYGFLYVTQGTNQQTAVVEVKDVKKSLG 589
V+ L++T FY E GGQ D G L + G +V DV+K +G
Sbjct: 518 IDNYVV-----------LDQTAFYPEGGGQPADTGVL-IVDGK-----GYKVVDVQK-VG 559
Query: 590 SVFVHKGTIREGVLEVGREVEAIVDPKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSL 649
V VH + + G EV +D + R R HHTATH++ AA +KV+G QAG+
Sbjct: 560 GVIVHV--LEGEPPKKGDEVRGEIDWERRYRLMRHHTATHIILAAARKVLGDHVWQAGAQ 617
Query: 650 VAFDRLRFDFNFHRPLLDTELEEIERLIN 678
D+ R D ++ + E++EIERL N
Sbjct: 618 KTVDKARLDITHYKRITREEVKEIERLAN 646
>gnl|CDD|234309 TIGR03683, A-tRNA_syn_arch, alanyl-tRNA synthetase. This family of
alanyl-tRNA synthetases is limited to the archaea, and
is a subset of those sequences identified by the model
pfam07973 covering the second additional domain (SAD) of
alanyl and threonyl tRNA synthetases.
Length = 902
Score = 298 bits (765), Expect = 8e-89
Identities = 208/728 (28%), Positives = 316/728 (43%), Gaps = 179/728 (24%)
Query: 51 DSIRKRFLDFYASRGHKVLPSASLVP---EDPTVLLTIAGMLQFKP-IFLGKVPRQVPRA 106
D +R+ FL F+ GH + +V +D V LTIA + F+P + G VP P A
Sbjct: 59 DEMREAFLSFFEKHGHTRIKRYPVVARWRDD--VYLTIASIADFQPWVTSGLVP---PPA 113
Query: 107 ---ATSQRCIRTNDVENVGRTSRHHTFFEMLGNFSFGD-----YFKKEAIQWAWEFSTVE 158
SQ CIR ND++NVGRT RH T FEM+ + +F Y+K E +++ +EF
Sbjct: 114 NPLVISQPCIRLNDIDNVGRTGRHLTCFEMMAHHAFNYPDKEIYWKDETVEYCFEFL--- 170
Query: 159 FGLPANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGATGPCGPCSEIYY 218
+E+G+ E I ++ W G G GPC E+
Sbjct: 171 ------------------------EELGIDPEEITYK---ESPWEGG--GNAGPCFEVIV 201
Query: 219 DFHPDRGCSDVDLGDDTRFIEFYNLVFMQYNKK-------DDGSLEPLKQKNIDTGLGLE 271
G +E LVFMQY + G + K +DTG GLE
Sbjct: 202 -----GG------------LELATLVFMQYEEDKEGEIEIKGGRYSEMPLKIVDTGYGLE 244
Query: 272 RIARILQKVPNNYETDLIFP-IIKKASELANVSYAQSN---------------------- 308
R Q P Y D IFP I+ K E A V
Sbjct: 245 RFVWASQGTPTAY--DAIFPEIVDKLKENAGVELIDEEILAENARLAGMMDIEDEEDLRE 302
Query: 309 ------DRTNLNLK-------------IIGDHLRAIVYLLSDGVFPSNIGRGYVVRRLIR 349
D+ ++++ I DH R + ++L DG+ PSN+ GY+ R +IR
Sbjct: 303 LRKKVADKIGIDVEELEKIIAPVERIYAIADHTRCLAFMLGDGIVPSNVKEGYLARLVIR 362
Query: 350 RAVRTGRLLGIKGDGRGNLEGAFLPSIAEKAIELSTHIDSDVKAREQRILEELKREELRF 409
R +R R LG+ L + E +E I ++K + IL+ L EE ++
Sbjct: 363 RTLRLMRELGLDIP---------LSDLVEMQLEELKKIYPELKENKDYILDILDLEEEKY 413
Query: 410 VQTLERGEKLLDQMLADALSRTRESGSVPRLSGQDAFLLYDTFGFPVEITKEVAEEHGVS 469
+TLERG ++++++L +T++ + D LYD+ G P EI KE+A E G
Sbjct: 414 RETLERGRRIVERLL-----KTKK-----EIPLDDLIELYDSHGIPPEIVKEIAAELGAE 463
Query: 470 VDMKGFDIEMENQRRQSQAAHN---AVKLSVDDSADLAEKIPDTEFLGYD---TLSAKAI 523
V++ +N H + D + A+ +P+T L Y+ +A
Sbjct: 464 VEIP------DNFYSIVAERHEKEEKEEELPKDYEERAKDLPETRRLFYEDPTMREFEAK 517
Query: 524 VESLLVNGKPVIKVSKGSDVEVLLNRTPFYAESGGQIGDYGFLYVTQGTNQQTAVVEVKD 583
V L V V+L++T FY E GGQ D G+L +T G V D
Sbjct: 518 V--LGVFDN-----------YVVLDQTAFYPEGGGQPADTGYL-ITNGGE-----YRVVD 558
Query: 584 VKKSLGSVFVHKGTIREGVLEVGREVEAIVDPKLRQRAKVHHTATHLLQAALKKVIGQET 643
V+K +G V VHK + ++ G EV+ +D + R R HHTATH+L AA ++V+G+
Sbjct: 559 VQK-VGGVIVHK--VDGEGIKEGDEVKGEIDWERRLRLMRHHTATHVLLAAARRVLGRHV 615
Query: 644 SQAGSLVAFDRLRFDFNFHRPLLDTELEEIERLINGWIGDANLLQTKVMALDDAKRAGAI 703
QAG+ D+ R D ++ + + E++EIERL N + + + K M ++A++
Sbjct: 616 WQAGAQKDTDKARLDITHYKRISEEEIKEIERLANRIVMENRPVSVKWMDRNEAEQ---- 671
Query: 704 AMFGEKYG 711
KYG
Sbjct: 672 -----KYG 674
>gnl|CDD|225427 COG2872, COG2872, Predicted metal-dependent hydrolases related to
alanyl-tRNA synthetase HxxxH domain [General function
prediction only].
Length = 241
Score = 79.7 bits (197), Expect = 1e-16
Identities = 50/143 (34%), Positives = 63/143 (44%), Gaps = 12/143 (8%)
Query: 536 KVSKGSDVEVLLNRTPFYAESGGQIGDYGFLYVTQGTNQQTAVVEVKDVKKSLGSVFVHK 595
V D E++L+RT FY GGQ GD G L V K G VH
Sbjct: 18 TVVDVEDNEIVLDRTIFYPTGGGQPGDTGTLI-----WAGGEYVVEDVTKD--GEEIVHV 70
Query: 596 GTIREGVLEVGREVEAIVDPKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRL 655
L+VG +V+ +D + R R HTA HLL A L KV G T G + D
Sbjct: 71 LAEHAK-LKVGDKVKLKIDWERRYRHMRMHTALHLLSAVLYKVYGALT--TGFEIGEDYA 127
Query: 656 RFDFNFHRPLLDTELEEIERLIN 678
R DF+ + E+EE+E L N
Sbjct: 128 RIDFDG--EDTEDEIEEVEALAN 148
>gnl|CDD|178546 PLN02961, PLN02961, alanine-tRNA ligase.
Length = 223
Score = 51.6 bits (124), Expect = 3e-07
Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 17/106 (16%)
Query: 542 DVEVLLNRTPFYAESGGQIGDYGFLYVTQGTNQQTAVVEVKDVKKSLGSVFVHKGTIREG 601
+ ++L+RT F+ + GGQ D G + ++ G V+DV++ G V+ H G
Sbjct: 2 RIALVLDRTIFHPQGGGQPSDTGRIVISGG----DTKFSVQDVRRKDGVVY-HYGVFEGS 56
Query: 602 ------VLEVGREVEAIVDPKLRQRAKVH---HTATHLLQAALKKV 638
E G EV VD R K+H H+A HLL + +V
Sbjct: 57 NPESASPFEAGDEVTVTVDE---SRRKLHSRLHSAGHLLDVCMARV 99
>gnl|CDD|238391 cd00768, class_II_aaRS-like_core, Class II tRNA amino-acyl
synthetase-like catalytic core domain. Class II amino
acyl-tRNA synthetases (aaRS) share a common fold and
generally attach an amino acid to the 3' OH of ribose of
the appropriate tRNA. PheRS is an exception in that it
attaches the amino acid at the 2'-OH group, like class I
aaRSs. These enzymes are usually homodimers. This domain
is primarily responsible for ATP-dependent formation of
the enzyme bound aminoacyl-adenylate. The substrate
specificity of this reaction is further determined by
additional domains. Intererestingly, this domain is also
found is asparagine synthase A (AsnA), in the accessory
subunit of mitochondrial polymerase gamma and in the
bacterial ATP phosphoribosyltransferase regulatory
subunit HisZ.
Length = 211
Score = 37.1 bits (86), Expect = 0.016
Identities = 39/196 (19%), Positives = 58/196 (29%), Gaps = 42/196 (21%)
Query: 83 LTIAGMLQF-KPIFLGKVPRQVP-RAATSQRCIRTNDVENVGRTSRHHTFFEMLGNFSFG 140
L + L+ R++P R A R E R R F L FG
Sbjct: 53 LYLRPTLEPGLVRLFVSHIRKLPLRLAEIGPAFRN---EGGRRGLRRVREFTQLEGEVFG 109
Query: 141 DYFKKEAIQWAWEFSTVEFGLPANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDN 200
+ ++ + I + E+ A K V VE
Sbjct: 110 EDGEEASEF---------------EELIELTEELLRAL--GIKLDIVFVE---------K 143
Query: 201 FWNSGATGPCGPCSEIYYDFHPDRGCSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLK 260
+ G GP EI D RG +++G + + E L+
Sbjct: 144 TPGEFSPGGAGPGFEIEVDHPEGRG---LEIGSGGYRQDE---QARAADLYFLD--EALE 195
Query: 261 QK---NIDTGLGLERI 273
+ I GLGLER+
Sbjct: 196 YRYPPTIGFGLGLERL 211
>gnl|CDD|131331 TIGR02278, PaaN-DH, phenylacetic acid degradation protein paaN.
This enzyme is proposed to act in the ring-opening step
of phenylacetic acid degradation which follows ligation
of the acid with coenzyme A (by PaaF) and hydroxylation
by a multicomponent non-heme iron hydroxylase complex
(PaaGHIJK). Gene symbols have been standardized in. This
enzyme is related to aldehyde dehydrogenases and has
domains which are members of the pfam00171 and pfam01575
families. This family includes paaN genes from
Pseudomonas, Sinorhizobium, Rhodopseudomonas,
Escherichia, Deinococcus and Corynebacterium. Another
homology family (TIGR02288) includes several other
species.
Length = 663
Score = 34.4 bits (79), Expect = 0.27
Identities = 23/87 (26%), Positives = 34/87 (39%), Gaps = 32/87 (36%)
Query: 61 YASRGHKVLPSASLVPEDPTVLLT---------------------------IAGMLQ-FK 92
Y+S G + LP A+L+PED L+ + G+L+ F
Sbjct: 107 YSSLGRRELPDANLIPEDEFEPLSKDGSFQGRHILTPKGGVAVQINAFNFPVWGLLEKFA 166
Query: 93 PIFLGKVPRQV----PRAATSQRCIRT 115
P FL VP P A ++ +RT
Sbjct: 167 PAFLAGVPTLAKPATPTAYVAEALVRT 193
>gnl|CDD|238618 cd01293, Bact_CD, Bacterial cytosine deaminase and related
metal-dependent hydrolases. Cytosine deaminases (CDs)
catalyze the deamination of cytosine, producing uracil
and ammonia. They play an important role in pyrimidine
salvage. CDs are present in prokaryotes and fungi, but
not mammalian cells. The bacterial enzymes, but not the
fungal enzymes, are related to the adenosine deaminases
(ADA). The bacterial enzymes are iron dependent and
hexameric.
Length = 398
Score = 33.0 bits (76), Expect = 0.54
Identities = 32/123 (26%), Positives = 50/123 (40%), Gaps = 40/123 (32%)
Query: 377 AEKAIELS---------THIDSDVKAREQRILEELK--REELR---------FVQTL--- 413
AE+A+EL+ TH+D D A + LE L REE F Q
Sbjct: 98 AERALELAIAHGTTAIRTHVDVDPAAG-LKALEALLELREEWADLIDLQIVAFPQHGLLS 156
Query: 414 -ERGEKLLD---QMLADALSRTRESGSVPRLSGQDAFLLYDTFGFPVEITKEVAEEHGVS 469
GE+L+ +M AD + G +P + ++ E+A+EHG+
Sbjct: 157 TPGGEELMREALKMGADVV------GGIPPAEIDEDGEES------LDTLFELAQEHGLD 204
Query: 470 VDM 472
+D+
Sbjct: 205 IDL 207
>gnl|CDD|219866 pfam08494, DEAD_assoc, DEAD/H associated. This domain is found in
ATP-dependent helicases as well as a number of
hypothetical proteins together with the helicase
conserved C-terminal domain (pfam00270) and the
pfam00271 domain.
Length = 188
Score = 31.7 bits (73), Expect = 0.79
Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 5/68 (7%)
Query: 656 RFDFNFHRPLLDTELEEIERLINGWIGDANLLQTKVMALDDAKRAGAI---AMFGEKYGE 712
D L +E+E ++ + + L K + A+RAG I K
Sbjct: 67 PVDAPDLAELFSELPDELEDILEAALNRSELF--KRRFREVARRAGLILRRYPGKRKSLR 124
Query: 713 QVKISSKM 720
Q +ISS +
Sbjct: 125 QQRISSDL 132
>gnl|CDD|131514 TIGR02461, osmo_MPG_phos, mannosyl-3-phosphoglycerate phosphatase.
Members of this family are mannosyl-3-phosphoglycerate
phosphatase (EC 3.1.3.70). It acts sequentially after
mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a
two-step pathway of biosynthesis of the compatible
solute mannosylglycerate, a typical osmolyte of
thermophiles.
Length = 225
Score = 31.7 bits (72), Expect = 0.96
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 6/54 (11%)
Query: 513 LGYDTLSAKAIVESLLVNGKPVIKVSKGSDVEVLLNR------TPFYAESGGQI 560
GY+ A+ +E L G P++ VS + E R PF E+GG I
Sbjct: 13 PGYEPGPAREALEELKDLGFPIVFVSSKTRAEQEYYREELGVEPPFIVENGGAI 66
>gnl|CDD|130550 TIGR01486, HAD-SF-IIB-MPGP, mannosyl-3-phosphoglycerate phosphatase
family. This small group of proteins is a member of the
IIB subfamily (TIGR01484) of the Haloacid Dehalogenase
(HAD) superfamily of aspartate-nucleophile hydrolases.
Several members of this family from thermophiles (and
from Dehalococcoides ethenogenes) are now known to act
as mannosyl-3-phosphoglycerate (MPG) phosphatase. In
these cases, the enzyme acts after MPG synthase to make
the compatible solute mannosylglycerate. We propose that
other mesophilic members of this family do not act as
mannosyl-3-phosphoglycerate phosphatase. A member of
this family is found in Escherichia coli, which appears
to lack MPG synthase. Mannosylglycerate is imported in
E. coli by phosphoenolpyruvate-dependent transporter
(PMID:14645248), but it appears the phosphorylation is
not on the glycerate moiety, that the phosphorylated
import is degraded by an alpha-mannosidase from an
adjacent gene, and that E. coli would have no pathway to
obtain MPG.
Length = 256
Score = 31.6 bits (72), Expect = 1.3
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 514 GYDTLSAKAIVESLLVNGKPVIKVSKGSDVEVLLNR------TPFYAESGGQI 560
GYD AK ++E L G PVI + + EV R PF E+GG I
Sbjct: 15 GYDWGPAKEVLERLQELGIPVIPCTSKTAAEVEYLRKELGLEDPFIVENGGAI 67
>gnl|CDD|214497 smart00062, PBPb, Bacterial periplasmic substrate-binding proteins.
bacterial proteins, eukaryotic ones are in PBPe.
Length = 219
Score = 31.1 bits (71), Expect = 1.5
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 452 FGFPVEITKEVAEEHGVSVDMKGFDIE 478
GF V++ K +A+E G+ V+ +
Sbjct: 23 TGFDVDLAKAIAKELGLKVEFVEVSFD 49
>gnl|CDD|235449 PRK05415, PRK05415, hypothetical protein; Provisional.
Length = 341
Score = 30.6 bits (70), Expect = 3.2
Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 9/63 (14%)
Query: 601 GVLEVGREVEAIVDPKLRQRAKVHHTATHLLQ----AALKKVIGQETSQAGSL---VAFD 653
G+ V RE + +LRQRA + A LL + + QAG A
Sbjct: 114 GLGIVVREWRRLR--RLRQRAHLRDEARALLHSHDVGEARAFCEKLAKQAGIPQLHPALQ 171
Query: 654 RLR 656
R +
Sbjct: 172 RWQ 174
>gnl|CDD|177101 MTH00009, COX3, cytochrome c oxidase subunit III; Validated.
Length = 259
Score = 30.2 bits (68), Expect = 3.6
Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 16/51 (31%)
Query: 121 VGRTSRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPANRLWISVY 171
+ RT HH FS G +F EA W W F V +WI +Y
Sbjct: 217 LLRTWSHH--------FSTGHHFGFEAAAWYWHFVDV--------VWIFLY 251
>gnl|CDD|203898 pfam08281, Sigma70_r4_2, Sigma-70, region 4. Region 4 of sigma-70
like sigma-factors are involved in binding to the -35
promoter element via a helix-turn-helix motif.
Length = 54
Score = 27.4 bits (62), Expect = 3.7
Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 3/28 (10%)
Query: 443 QDAFLLYDTFGFPVEITKEVAEEHGVSV 470
++ FLL G E+AE G+S
Sbjct: 16 REVFLLRYLEGLS---YAEIAELLGISE 40
>gnl|CDD|217902 pfam04111, APG6, Autophagy protein Apg6. In yeast, 15 Apg proteins
coordinate the formation of autophagosomes. Autophagy is
a bulk degradation process induced by starvation in
eukaryotic cells. Apg6/Vps30p has two distinct functions
in the autophagic process, either associated with the
membrane or in a retrieval step of the carboxypeptidase
Y sorting pathway.
Length = 356
Score = 30.2 bits (68), Expect = 3.9
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 9/55 (16%)
Query: 379 KAIELSTHIDSDVKAREQRILEELKREELRFVQTLERGEKLLDQMLADALSRTRE 433
I +DS+ L+ELK+EE R + LE EK D L L +E
Sbjct: 60 VEISNYEALDSE--------LDELKKEEERLLDELEELEK-EDDDLDGELVELQE 105
>gnl|CDD|176508 cd08565, GDPD_pAtGDE_like, Glycerophosphodiester phosphodiesterase
domain of putative Agrobacterium tumefaciens
glycerophosphodiester phosphodiesterase and similar
proteins. This subfamily corresponds to the
glycerophosphodiester phosphodiesterase domain (GDPD)
present in putative Agrobacterium tumefaciens
glycerophosphodiester phosphodiesterase (pAtGDE, EC
3.1.4.46) and its uncharacterized homologs. Members in
this family show high sequence similarity to Escherichia
coli GP-GDE, which catalyzes the degradation of
glycerophosphodiesters to produce
sn-glycerol-3-phosphate (G3P) and the corresponding
alcohols.
Length = 235
Score = 29.7 bits (67), Expect = 5.0
Identities = 32/130 (24%), Positives = 44/130 (33%), Gaps = 3/130 (2%)
Query: 344 VRRLIRRAVRTGRLLGIKGDGRGNLEGAFLPSIAEKAIELSTHIDSDVKAREQRILEELK 403
VR L + RL G+ LE L A +EL I +D L
Sbjct: 60 VRDLTLAERKALRLRDSFGEKIPTLE-EVLALFAPSGLELHVEIKTDADGTPYPGAAALA 118
Query: 404 REELRFVQTLERGEKLLDQMLADALSRTRESGSVPRLSGQDAFLLYDTFGFPVEITKEVA 463
LR LER +L L+ R+ V L D +L G +T
Sbjct: 119 AATLRRHGLLER--SVLTSFDPAVLTEVRKHPGVRTLGSVDEDMLERLGGELPFLTATAL 176
Query: 464 EEHGVSVDMK 473
+ H V+V+
Sbjct: 177 KAHIVAVEQS 186
>gnl|CDD|217998 pfam04266, ASCH, ASCH domain. The ASCH domain adopts a beta-barrel
fold similar to the pfam01472 domain. It is thought to
function as an RNA-binding domain during coactivation,
RNA-processing and possibly during prokaryotic
translation regulation.
Length = 104
Score = 28.1 bits (63), Expect = 5.1
Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 13/62 (20%)
Query: 525 ESLLVNGKPVIKVSKGSDVEVLLNRTPFYAESGGQIGDYGFLYVTQGTNQQTAVVEVKDV 584
L+++GK K E L P Q+GD L+ G + V+EV DV
Sbjct: 8 ADLILSGK---KT-----AEYRLWDEPLP-----QVGDLLILFELNGGGRPVGVIEVTDV 54
Query: 585 KK 586
+
Sbjct: 55 EI 56
>gnl|CDD|226292 COG3769, COG3769, Predicted hydrolase (HAD superfamily) [General
function prediction only].
Length = 274
Score = 29.4 bits (66), Expect = 5.7
Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 7/54 (12%)
Query: 514 GYDTLSAKAIVESLLVNGKPVIKVSKGSDVEVL-------LNRTPFYAESGGQI 560
Y+ A ++ L G PVI S + E+L + P AE+G I
Sbjct: 22 SYEWQPAAPVLLELKDAGVPVILCSSKTRAEMLYLQKSLGVQGLPLIAENGAAI 75
>gnl|CDD|235373 PRK05249, PRK05249, soluble pyridine nucleotide transhydrogenase;
Provisional.
Length = 461
Score = 29.4 bits (67), Expect = 7.4
Identities = 22/74 (29%), Positives = 29/74 (39%), Gaps = 13/74 (17%)
Query: 577 AVVEVKDVKKSLGSVFVHKGTI-----REGVLEVGREVEAIVDPKLRQ-RAKVHHTATHL 630
AV+E +G H GTI RE VL R + +P R K+ T L
Sbjct: 32 AVIERYRN---VGGGCTHTGTIPSKALREAVL---RLIGFNQNPLYSSYRVKLRITFADL 85
Query: 631 LQAALKKVIGQETS 644
L A VI ++
Sbjct: 86 L-ARADHVINKQVE 98
>gnl|CDD|204299 pfam09733, VEFS-Box, VEFS-Box of polycomb protein. The VEFS-Box
(VRN2-EMF2-FIS2-Su(z)12) box is the C-terminal region of
these proteins, characterized by an acidic cluster and a
tryptophan/methionine-rich sequence, the acidic-W/M
domain. Some of these sequences are associated with a
zinc-finger domain about 100 residues towards the
N-terminus. This protein is one of the polycomb cluster
of proteins which control HOX gene transcription as it
functions in heterochromatin-mediated repression.
Length = 141
Score = 28.1 bits (63), Expect = 8.1
Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 5/64 (7%)
Query: 671 EEIERLINGWIGDANLLQTKVMALDDAKRAGAIAMFGEKYGEQVKISSKMYVLWRFLVC- 729
E +R++ W N K + D A F +G+++ + WR +
Sbjct: 67 EGEKRIMKLW----NSFVRKQRVIADGHIPWACEAFSRLHGQELVQKPNLDWNWRLHMIK 122
Query: 730 LWNF 733
LWN
Sbjct: 123 LWNH 126
>gnl|CDD|220654 pfam10254, Pacs-1, PACS-1 cytosolic sorting protein. PACS-1 is a
cytosolic sorting protein that directs the localisation
of membrane proteins in the trans-Golgi network
(TGN)/endosomal system. PACS-1 connects the clathrin
adaptor AP-1 to acidic cluster sorting motifs contained
in the cytoplasmic domain of cargo proteins such as
furin, the cation-independent mannose-6-phosphate
receptor and in viral proteins such as human
immunodeficiency virus type 1 Nef.
Length = 413
Score = 29.4 bits (66), Expect = 8.4
Identities = 21/94 (22%), Positives = 40/94 (42%), Gaps = 14/94 (14%)
Query: 34 PLTEEVEDKSQDFPSSGDSIRKRFLDFYASRGHKVLPSASLVPE-DPTVLLTIAGMLQFK 92
E ++ S+ S ++++ F SR LPS+ + T+ +T+ + K
Sbjct: 281 RPGERRKEGSKRDASGKNTLKSTFRSLQVSR----LPSSGQEAQMTNTMSMTVVTKEKNK 336
Query: 93 P---IFLGKVPRQVPRAATSQRCIRTNDVENVGR 123
+FLGK P++ + SQ +E + R
Sbjct: 337 KVPVMFLGKKPKEKEVESKSQC------IEGISR 364
>gnl|CDD|183859 PRK13103, secA, preprotein translocase subunit SecA; Reviewed.
Length = 913
Score = 29.5 bits (66), Expect = 8.8
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
Query: 391 VKAREQRIL----EELKREELRFVQTLERGEKLLDQMLADALSRTRESG 435
V A E++++ E+L+ + F L +GE L DQ+L +A + RE+G
Sbjct: 28 VNAFEEQMVALSDEQLRAKTAEFKARLAKGETL-DQLLPEAFAVAREAG 75
>gnl|CDD|234459 TIGR04082, rSAM_for_selen, selenobiotic family peptide radical SAM
maturase. Members of this protein family are radical
SAM (rSAM) enzymes similar in sequence to others with
known or postulated roles in peptide modification, and
regularly found adjacent to members of the GSU_1558
peptide family described by model TIGR04081. GSU_1558
and several other members of that family appear to be
selenoproteins, hence the term selenobiotic.
Length = 516
Score = 29.3 bits (66), Expect = 8.9
Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 6/67 (8%)
Query: 292 IIKKASELANVSYAQSNDRTNLNLKIIGDHLRAIVYLLSDGVFPSNIGRGYVVRRLIRRA 351
++ K V ++ L LKI+ + + L GV P + RL+ A
Sbjct: 110 LVWKDPGTGRVRVEPADQNDLLALKIVAEGIPPEEAALEAGVAP------GTIDRLLDHA 163
Query: 352 VRTGRLL 358
VR G LL
Sbjct: 164 VRKGLLL 170
>gnl|CDD|234252 TIGR03545, TIGR03545, TIGR03545 family protein. This model
represents a relatively rare but broadly distributed
uncharacterized protein family, distributed in 1-2
percent of bacterial genomes, all of which have outer
membranes. In many of these genomes, it is part of a
two-gene pair.
Length = 555
Score = 29.3 bits (66), Expect = 9.0
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 6/60 (10%)
Query: 247 QYNKKDDGSLEPLKQKNIDTGLGLERIARILQKVPNNYETDLIFPIIKKASELANVSYAQ 306
+Y K+ LE +K+K+I L L++I K+ + D IK A Q
Sbjct: 195 EYKKR----LEAIKKKDIKNPLELQKIKEEFDKLKKEGKAD--KQKIKSAKNDLQNDKKQ 248
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.137 0.399
Gapped
Lambda K H
0.267 0.0720 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 39,567,755
Number of extensions: 4043488
Number of successful extensions: 4187
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4100
Number of HSP's successfully gapped: 54
Length of query: 759
Length of database: 10,937,602
Length adjustment: 104
Effective length of query: 655
Effective length of database: 6,324,786
Effective search space: 4142734830
Effective search space used: 4142734830
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.1 bits)