RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 004366
(759 letters)
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif,
amino acid binding, ligase; 2.08A {Aquifex aeolicus}
SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A
1ygb_A 3htz_A
Length = 465
Score = 708 bits (1830), Expect = 0.0
Identities = 209/480 (43%), Positives = 298/480 (62%), Gaps = 27/480 (5%)
Query: 49 SGDSIRKRFLDFYASRGHKVLPSASLVPE-DPTVLLTIAGMLQFKPIFLGKVPRQVPRAA 107
S IR+ FL F+ +GH + SA LVPE DPT+L AGM+ FK +FLG R RA
Sbjct: 4 SAHEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRPYKRAT 63
Query: 108 TSQRCIRT----NDVENVGRTSRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPA 163
+ Q+C+R ND+E VG TSRHHTFFEMLGNFSFGDYFKKEAI++AWEF T LP
Sbjct: 64 SCQKCLRVSGKHNDLEQVGYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVLKLPK 123
Query: 164 NRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGATGPCGPCSEIYYDFHPD 223
+L++SVY+DD+EA+ IWN+ +G+P E I R+G +DNFW G GPCGP SEIY D +
Sbjct: 124 EKLYVSVYKDDEEAYRIWNEHIGIPSERIWRLGEEDNFWQMGDVGPCGPSSEIYVDRGEE 183
Query: 224 RGCSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERIARILQKVPNN 283
+ R++E +NLVFMQYN+ ++G L PL NIDTG+GLERIA +LQ +N
Sbjct: 184 YEGDE-------RYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGLERIASVLQGKNSN 236
Query: 284 YETDLIFPIIKKASELANVSYAQSNDRTNLNLKIIGDHLRAIVYLLSDGVFPSNIGRGYV 343
+E D+IFP+I+ E++ Y + T++ L++I DHLRAI + +SDGV PSN GRGYV
Sbjct: 237 FEIDIIFPLIQFGEEVSGKKYGE-KFETDVALRVIADHLRAITFAISDGVIPSNEGRGYV 295
Query: 344 VRRLIRRAVRTGRLLGIKGDGRGNLEGAFLPSIAEKAIELSTHIDSDVKAREQRILEELK 403
+RR++RRA+R G LGI+ FL + +++ +++ + + +K
Sbjct: 296 IRRILRRAMRFGYKLGIE--------NPFLYKGVDLVVDIMKEPYPELELSREFVKGIVK 347
Query: 404 REELRFVQTLERGEKLLDQMLADALSRTRESGSVPRLSGQDAFLLYDTFGFPVEITKEVA 463
EE RF++TL+ G + + +++ AL R+ LSG++ F YDT+GFPV++ E+A
Sbjct: 348 GEEKRFIKTLKAGMEYIQEVIQKALEEGRK-----TLSGKEVFTAYDTYGFPVDLIDEIA 402
Query: 464 EEHGVSVDMKGFDIEMENQRRQSQAAHNAVKLSVD-DSADLAEKIPDTEFLGYDTLSAKA 522
E G+ +D++GF E+E QR +++ V + L E + F+G L
Sbjct: 403 REKGLGIDLEGFQCELEEQRERARKHFKVEAKKVKPVYSHLKELGKTSAFVGAAALEHHH 462
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase,
aminoacyl-tRNA synthetase, ATP-binding, cytoplasm,
ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Length = 739
Score = 717 bits (1854), Expect = 0.0
Identities = 169/711 (23%), Positives = 281/711 (39%), Gaps = 125/711 (17%)
Query: 49 SGDSIRKRFLDFYASRGHKVLPSASLVPE-DPTVLLTIAGMLQFKPIFL-GKVPRQVPRA 106
D +R+ +L+F+ RGH + +V + LTIA + F+P G P
Sbjct: 61 ELDEMREYYLNFFERRGHGRIERYPVVARWRTDIYLTIASIADFQPFVTSGVAPPPANPL 120
Query: 107 ATSQRCIRTNDVENVGRTSRHHTFFEMLGNFSFGD-----YFKKEAIQWAWEFSTVEFGL 161
SQ CIR +D+++VGRT RH T FEM+ + +F Y+K E + + E
Sbjct: 121 TISQPCIRLDDLDSVGRTGRHLTLFEMMAHHAFNYPGKEIYWKNETVAYCTELLN----- 175
Query: 162 PANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGATGPCGPCSEIYYDF- 220
E+GV E I + W G G GPC E
Sbjct: 176 ----------------------ELGVKKEDIVY---KEEPWAGG--GNAGPCLEAIVGGL 208
Query: 221 --------HPDRGCSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLER 272
+ + R+ + N + + + + E
Sbjct: 209 EVATLVFMNLEEHPEGDIEIKGARYRKMDNYIVDTGYGLERFVWASKGTPTVYDAIFPEV 268
Query: 273 IARILQK--VPNNYETDLIFPIIKKASELANVSYAQSND--------------------- 309
+ I+ V N E + + I+ ++S+LA + +
Sbjct: 269 VDTIIDNSNVSFNREDERVRRIVAESSKLAGIMGELRGERLNQLRKSVADTVGVSVEELE 328
Query: 310 ---RTNLNLKIIGDHLRAIVYLLSDGVFPSNIGRGYVVRRLIRRAVRTGRLLGIKGDGRG 366
+ + DH R I+++L DG+ PSN G GY+ R +IRR++R L +
Sbjct: 329 GIVVPLEKVYSLADHTRCILFMLGDGLVPSNAGAGYLARLMIRRSLRLAEELELG----- 383
Query: 367 NLEGAFLPSIAEKAIELSTHIDSDVKAREQRILEELKREELRFVQTLERGEKLLDQMLAD 426
L + E ++ + + + E L+ E+ R+ T+ +G +L+++++
Sbjct: 384 ----LDLYDLVEMHKKI---LGFEFDVPLSTVQEILELEKERYRTTVSKGTRLVERLVER 436
Query: 427 ALSRTRESGSVPRLSGQDAFLLYDTFGFPVEITKEVAEEHGVSVDM-KGFDIEMENQRRQ 485
+L D LYD+ G PVE+ +A E G V+M K E+ + +
Sbjct: 437 K----------KKLEKDDLIELYDSHGIPVELAVGIAAEKGAEVEMPKDIYAELAKRHSK 486
Query: 486 SQAAHNAVKLSVDDSADLAEKIPDTEFLGYDTLSAKAIVESLLVNGKPVIKVSKGSDVEV 545
++ L + P TE L YD + +V V
Sbjct: 487 AEKVQE-------KKITLQNEYPATEKLYYDDPTLLEFEA----------EVIGVEGDFV 529
Query: 546 LLNRTPFYAESGGQIGDYGFLYVTQGTNQQTAVVEVKDVKKSLGSVFVHKGTIREGVLEV 605
+LNR+ FY ESGGQ D G+L G EV DV + V +H ++ EV
Sbjct: 530 ILNRSAFYPESGGQDNDVGYLIANGGK------FEVVDVLE-ADGVVLH--VVKGAKPEV 580
Query: 606 GREVEAIVDPKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPL 665
G +V+ ++D +R R HH+ATH+L +L+KV+G QAG+ F + R D R
Sbjct: 581 GTKVKGVIDSDVRWRHMRHHSATHVLLYSLQKVLGNHVWQAGARKEFSKARLDVTHFRRP 640
Query: 666 LDTELEEIERLINGWIGDANLLQTKVMALDDAKRAGAIAMF--GEKYGEQV 714
+ E++EIE L N I ++ + M +A+R ++ G G ++
Sbjct: 641 SEEEIKEIEMLANREILANKPIKWEWMDRIEAERKFGFRLYQGGVPPGRKI 691
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein
biosynthesis, NUC binding, amino acid-binding,
ATP-binding, metal-binding; HET: G5A EPE; 1.90A
{Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A*
3hxw_A* 3hxx_A* 3hxy_A*
Length = 441
Score = 655 bits (1693), Expect = 0.0
Identities = 218/457 (47%), Positives = 293/457 (64%), Gaps = 37/457 (8%)
Query: 49 SGDSIRKRFLDFYASRGHKVLPSASLVPE-DPTVLLTIAGMLQFKPIFLGKVPRQVPRAA 107
S IR+ FLDF+ S+GH+V+ S+SLVP DPT+L T AGM QFK +FLG R RA
Sbjct: 3 STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 62
Query: 108 TSQRCIRT----NDVENVGRTSRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVE--FGL 161
TSQRC+R ND+ENVG T+RHHTFFEMLGNFSFGDYFK +AI +AW T E F L
Sbjct: 63 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKLDAILFAWLLLTSEKWFAL 122
Query: 162 PANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMG-------ADDNFWNSGATGPCGPCS 214
P RLW++VYE DDEA+EIW KEVG+P E I R+G A DNFW G TGPCGPC+
Sbjct: 123 PKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 182
Query: 215 EIYYDFHPDRGCS--DVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLER 272
EI+YD D R+IE +N+VFMQ+N++ DG++EPL + ++DT +GLER
Sbjct: 183 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTAMGLER 242
Query: 273 IARILQKVPNNYETDLIFPIIKKASELANVSYAQSNDRTNLNLKIIGDHLRAIVYLLSDG 332
IA +LQ V +NY+ DL +I+ +++ + +N +L++I DH+R+ +L++DG
Sbjct: 243 IAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD-----LSNKSLRVIADHIRSCAFLIADG 297
Query: 333 VFPSNIGRGYVVRRLIRRAVRTGRLLGIKGDGRGNLEGAFLPSIAEKAIELSTHIDSDVK 392
V PSN RGYV+RR+IRRAVR G +LG K F + I++ D+K
Sbjct: 298 VMPSNENRGYVLRRIIRRAVRHGNMLGAK--------ETFFYKLVGPLIDVMGSAGEDLK 349
Query: 393 AREQRILEELKREELRFVQTLERGEKLLDQMLADALSRTRESGSVPRLSGQDAFLLYDTF 452
++ ++ + LK EE +F +TLERG LLD+ LA T L G+ AF LYDT+
Sbjct: 350 RQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGDT--------LDGETAFRLYDTY 401
Query: 453 GFPVEITKEVAEEHGVSVDMKGFDIEMENQRRQSQAA 489
GFPV++T +V E + VD GF+ ME QRR+++ A
Sbjct: 402 GFPVDLTADVCRERNIKVDEAGFEAAMEEQRRRAREA 438
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A
{Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*
Length = 752
Score = 474 bits (1221), Expect = e-157
Identities = 172/733 (23%), Positives = 283/733 (38%), Gaps = 149/733 (20%)
Query: 49 SGDSIRKRFLDFYASRG---HKVLPSASLVPE-DPTVLLTIAGMLQFKP-IFLGKVPRQV 103
+ D +R+ FL F+ H + ++P VLL A ++ F+P + G+
Sbjct: 58 TLDEMREXFLRFFEXHEIYPHGRVXRYPVLPRWRDDVLLVGASIMDFQPWVISGEADPPA 117
Query: 104 PRAATSQRCIRTNDVENVGRTSRHHTFFEMLGNFSFGD-----YFKKEAIQWAWEFSTVE 158
SQ IR D++NVG T RH T FEM+ + +F Y+ E ++ A+EF T E
Sbjct: 118 NPLVISQPSIRFTDIDNVGITGRHFTIFEMMAHHAFNYPGXPIYWMDETVELAFEFFTKE 177
Query: 159 FGLPANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGATGPCGPCSEIYY 218
+ + +N W G G GP E+ Y
Sbjct: 178 LXMXPEDITF-----------------------------KENPWAGG--GNAGPAFEVLY 206
Query: 219 DFHPDRGCSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLE------------PLKQKNIDT 266
R +E LVFMQY + + + P++ +DT
Sbjct: 207 -----------------RGLEVATLVFMQYXXAPENAPQDQVVVIXGEKYIPMETXVVDT 249
Query: 267 GLGLERIARILQKVPNNYETDLIF----------------PIIKKASELANVSYAQSND- 309
G GLER+ + Q P Y+ L + I+ + S LA + +
Sbjct: 250 GYGLERLVWMSQGTPTAYDAVLGYVVEPLXXMAGIEKIDEKILMENSRLAGMFDIEDLGD 309
Query: 310 -----------------------RTNLNLKIIGDHLRAIVYLLSDGVFPSNIGRGYVVRR 346
R + I DH +A+ ++L+DGV PSN+ GY+ R
Sbjct: 310 LRYLREQVAKRVGITVEELEKAIRPYELIYAIADHTKALTFMLADGVVPSNVXAGYLARL 369
Query: 347 LIRRAVRTGRLLGIKGDGRGNLEGAFLPSIAEKAIELSTHIDSDVKAREQRILEELKREE 406
LIR+++R R LG++ L I I + E ILE ++ EE
Sbjct: 370 LIRKSIRHLRELGLE---------VPLSEIVALHIXELHKTFPEFXEMEDIILEMIELEE 420
Query: 407 LRFVQTLERGEKLLDQMLADALSRTRESGSVPRLSGQDAFLLYDTFGFPVEITKEVAEEH 466
+ +TL RG L+ + +A + + + + Y++ G EI E+AE+
Sbjct: 421 KXYAETLRRGSDLVRREIAKLKKKGIKE-----IPVEXLVTFYESHGLTPEIVXEIAEKE 475
Query: 467 GVSVDMK-GFDIEMENQRRQSQAAHNAVKLSVDDSADLAEKIPDTEFLGYDTLSAKAIVE 525
GV V++ F + + +++ +L + +PDT L Y+
Sbjct: 476 GVKVNIPDNFYSMVAKEAERTKEEKG----EELVDFELLKDLPDTRRLYYEDPFMXEFDA 531
Query: 526 SLLVNGKPVIKVSKGSDVEVLLNRTPFYAESGGQIGDYGFLYVTQGTNQQTAVVEVKDVK 585
+L + V+L+ T FY E GGQ D G L V V V +V+
Sbjct: 532 XVL----------RVIXDWVILDATAFYPEGGGQPYDTGVLIVNGRE------VXVTNVQ 575
Query: 586 KSLGSVFVHKGTIREGVLEVGREVEAIVDPKLRQRAKVHHTATHLLQAALKKVIGQETSQ 645
+ G G V +D R + HHT TH+L AL +V+G+ Q
Sbjct: 576 XV--GXVIIHXVEDPGAFXEGMIVHGXIDWXRRIQHMRHHTGTHVLMGALVRVLGRHVWQ 633
Query: 646 AGSLVAFDRLRFDFNFHRPLLDTELEEIERLINGWIGDANLLQTKVMALDDAKRAGAIAM 705
AGS + D R D + + + + EL EIE L N + + + + + A++ +
Sbjct: 634 AGSQLTTDWARLDISHYXRISEEELXEIEMLANRIVMEDRXVTWEWLPRTTAEQXYGFRL 693
Query: 706 F--GEKYGEQVKI 716
+ G G ++++
Sbjct: 694 YQGGVVPGREIRV 706
>2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase;
zinc-binding motif, trans-editing enzyme, structural
genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP:
b.43.3.6 d.67.1.2
Length = 216
Score = 191 bits (488), Expect = 1e-56
Identities = 52/211 (24%), Positives = 79/211 (37%), Gaps = 39/211 (18%)
Query: 507 IPDTEFLGYDTLSAKAIVESLLVNGKPVIKVSKGSDVEVLLNRTPFYAESGGQIGDYGFL 566
I T L Y+ K +V + D +LL++T FY GGQ D G +
Sbjct: 2 INMTRKLYYEDAYLKEAKG----------RVLEIRDNAILLDQTIFYPTGGGQPHDRGTI 51
Query: 567 YVTQGTNQQTAVVEVKDVKKSLGSVFVHKGTIREGVLEVGREVEAIVDPKLRQRAKVHHT 626
VEV DV K H +VG EVE +D R + HT
Sbjct: 52 NG----------VEVLDVYKDEEGNVWHVV-KEPEKFKVGDEVELKIDWDYRYKLMRIHT 100
Query: 627 ATHLLQAALKKVIGQETSQ-AGSLVAFDRLRFDFNFHRPLLDTELEEIERLINGWIGDAN 685
HLL+ L +V+G+ Q GS ++ ++ R+D + L E+I L N ++
Sbjct: 101 GLHLLEHVLNEVLGEGNWQLVGSGMSVEKGRYDIAYPENLNK-YKEQIISLFNKYV---- 155
Query: 686 LLQTKVMALDDAKRAGAIAMFGEKYGEQVKI 716
G + ++ E +I
Sbjct: 156 ------------DEGGEVKIWWEGDRRYTQI 174
>3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase,
protein structure initiative; 2.00A {Clostridium
perfringens}
Length = 241
Score = 177 bits (452), Expect = 3e-51
Identities = 36/187 (19%), Positives = 68/187 (36%), Gaps = 19/187 (10%)
Query: 530 NGKPVIKVSKGSDVEVLLNRTPFYAESGGQIGDYGFLYVTQGTNQQTAVVEVKDVKKSLG 589
G+ + VLL++T F+ GGQ+GD G + ++V DV +
Sbjct: 17 KGEIIEVKEIDGKFHVLLDQTAFFPGGGGQMGDLGLI----------DGIKVLDVYEE-E 65
Query: 590 SVFVHKGTIREGVLEVGREVEAIVDPKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSL 649
H E + + ++ +D + R H HLL + G T G
Sbjct: 66 GKVYHVL---EKEPKKLKNLQCELDWERRFDGMQQHLGQHLLSGCFYDLFGANT--CGFH 120
Query: 650 VAFDRLRFDFNFHRPLLDTELEEIERLINGWIGDANLLQTKVMALDDAKRAGAIAMFGEK 709
+ + D L + + E E+ N I + +++ + + K+ K
Sbjct: 121 LGKEISTVDIV--GFLDEKTIREAEKEANRLIFENLEVKSYAPSKKELKKVKTRR-ALPK 177
Query: 710 YGEQVKI 716
E+++I
Sbjct: 178 TDEEIRI 184
>1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural
genomics/proteomics initiative RSGI, structural
genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2
PDB: 1wxo_A 1v7o_A 1wnu_A 3rhu_A 3rfn_A
Length = 157
Score = 117 bits (295), Expect = 9e-31
Identities = 25/108 (23%), Positives = 48/108 (44%), Gaps = 6/108 (5%)
Query: 617 LRQRAKVHHTATHLLQAALKKVIGQETSQA-GSLVAFDRLRFDFNFHRPLLDTELEEIER 675
+ H+A H+++ A+ KV+G E + V ++ F R D E+ EIER
Sbjct: 1 MYSIEVRTHSALHVVKGAVVKVLGSEAKWTYSTYVKGNKGVLIVKFDRKPSDEEIREIER 60
Query: 676 LINGWIGDANLLQTKVMALDDAKRAGAIAMFGEKYGEQVKISSKMYVL 723
L N + + ++ + ++A+ MFGE + + + +L
Sbjct: 61 LANEKVKENAPIKIYELPREEAE-----KMFGEDMYDLFPVPEDVRIL 103
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 63.5 bits (154), Expect = 2e-10
Identities = 114/707 (16%), Positives = 187/707 (26%), Gaps = 288/707 (40%)
Query: 22 VPSARSTSASV----------QPLTEEVEDKSQDFPSSGDSIRKRFLDFYASRGHKVLPS 71
VP+A AS +P D D P++ + +FL + + V PS
Sbjct: 22 VPTASFFIASQLQEQFNKILPEPTEGFAAD---DEPTTPAELVGKFLGYVS---SLVEPS 75
Query: 72 ASLVPEDPTVLLTIAGMLQFKPIFLGKVPRQVPRAATSQRCIRTNDVENVGRTSRHHTFF 131
V + VL + +F+ +L ND+ H
Sbjct: 76 K--VGQFDQVLNLC--LTEFENCYL-----------------EGNDI---------HALA 105
Query: 132 EMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPANRLWISVYEDDDEAFEIWNKEVGVPVEH 191
L + L + I Y A + +
Sbjct: 106 AKL-------------------LQENDTTLVKTKELIKNY---ITARIMAKRPFDKKSNS 143
Query: 192 IKRMGADDNFWNSGATGPCGPCSEIYYDFHPDRGCSDVDLGDDTRFIEFYNLVFMQYNKK 251
+ + G +++ F G
Sbjct: 144 A--------LFRAVGEGN----AQLVAIF-----------G------------------- 161
Query: 252 DDGSLEPLKQKNIDTGLGLERIARILQKVPNNYET--DLIFPIIKKASELANVSYAQSND 309
G Q N D E L+ + Y+T L+ +IK ++E + + D
Sbjct: 162 --G------QGNTDDYFE-E-----LRDL---YQTYHVLVGDLIKFSAETLSELIRTTLD 204
Query: 310 RTNL---NLKIIG-----DHLRAIVYLLSDGV-FPSNIGRGYVVRRLIRRA--VRTGRLL 358
+ L I+ + YLLS + P IG +I+ A V T +LL
Sbjct: 205 AEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPL-IG-------VIQLAHYVVTAKLL 256
Query: 359 GIK-GDGRGNLEGA---------------------FLPSIAEKAIELSTHIDSDVKAREQ 396
G G+ R L+GA F KAI + I R
Sbjct: 257 GFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFF-VSVRKAITVLFFIG----VRCY 311
Query: 397 RILEELKREELRFVQTLERGEKLLDQMLADALSRTRESGSVPRLSGQDAFLLYDTFGFPV 456
+LE E + ML+ +S
Sbjct: 312 EAYPNTSLPPSILEDSLENNEGVPSPMLS--------------ISN-------------- 343
Query: 457 EITKEVAEEHGVSVDMKGFDIEMENQRRQSQAAHNAVKLSVDDSADLAEKIPDTEFLGYD 516
+T+E +++ + N A V++S+ + A
Sbjct: 344 -LTQEQVQDY----------VNKTNS---HLPAGKQVEISLVNGAK-------------- 375
Query: 517 TLSAKAIVESLLVNGKPV-----------IKVSKGSDVEVLLNRTPFYAESGGQI-GDYG 564
+V V+G P K G D +R PF S ++
Sbjct: 376 -----NLV----VSGPPQSLYGLNLTLRKAKAPSGLDQ----SRIPF---SERKLKFSNR 419
Query: 565 FL---------YVTQGTNQQTAVVEVKDVK---KSLG-SVF-VHKGT-IREGVLEVGREV 609
FL + ++ + +V K + V+ G+ +R +
Sbjct: 420 FLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSI---S 476
Query: 610 EAIVDPKLRQR----AKVHHTATHLLQAALKKVIGQ-ETSQAGSLVA 651
E IVD +R ATH+L G S G L
Sbjct: 477 ERIVDCIIRLPVKWETTTQFKATHIL------DFGPGGASGLGVLTH 517
Score = 56.6 bits (136), Expect = 3e-08
Identities = 94/530 (17%), Positives = 161/530 (30%), Gaps = 177/530 (33%)
Query: 227 SDVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERIARILQKVPNNYET 286
+ +L +F+ + +EP K D ++L +E
Sbjct: 56 TPAELV--GKFLGYV-----------SSLVEPSKVGQFD---------QVLNLCLTEFEN 93
Query: 287 DLIFPIIKKASE---LANVSYAQSNDRTNLNLKIIGDHLRAIVYLLSDGVFPSNIGRGYV 343
+ + ++ LA Q ND T + K + ++ Y+ + + +
Sbjct: 94 CYL-----EGNDIHALA-AKLLQENDTTLVKTKEL---IKN--YITARIMAKRPFDKKS- 141
Query: 344 VRRLIRRAVRTG--RLLGIKGDGRGNLEGAFLPSIAEKAIEL------STHIDSDVKARE 395
+ RAV G +L+ I G G+GN + F E EL + D+
Sbjct: 142 -NSALFRAVGEGNAQLVAIFG-GQGNTDDYF-----E---ELRDLYQTYHVLVGDLIKFS 191
Query: 396 QRILEELKREELRFVQTLERGEKLLDQMLADALSRTRESGSVPRLSGQDAFLLYDTFGFP 455
L EL R L + +G L+ + + L + P +LL P
Sbjct: 192 AETLSELIRTTLDAEKVFTQG---LN--ILEWL---ENPSNTP----DKDYLLSIPISCP 239
Query: 456 VEITKEVAEEHGVSVDMKGFDIEMENQRRQSQAAHNAVKLSVDDS--ADLAEKIPDTEFL 513
+ I GV Q AH V + +L +
Sbjct: 240 L-I--------GVI-----------------QLAHYVVTAKLLGFTPGELRSYLKGATGH 273
Query: 514 GYDTLSAKAI-----VESLLVNGKPVIKVSKGSDVEVLLNRTPFYAESGGQIGDYGFLYV 568
++A AI ES V+ + I V F+ IG
Sbjct: 274 SQGLVTAVAIAETDSWESFFVSVRKAITVL-------------FF------IG-----VR 309
Query: 569 TQGTNQQTAVVEVKDVKKSLGSVFVHKGTIREGV----LEV-G---REVEAIVD---PKL 617
T++ ++ SL EGV L + +V+ V+ L
Sbjct: 310 CYEAYPNTSL-PPSILEDSL--------ENNEGVPSPMLSISNLTQEQVQDYVNKTNSHL 360
Query: 618 RQRAKVH----HTATHL-----------LQAALKKV---IGQETSQAGSLVAFD--RLRF 657
+V + A +L L L+K G + S+ + F +L+F
Sbjct: 361 PAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSR----IPFSERKLKF 416
Query: 658 D--FN-----FHRPLLDTELEEI-ERLINGWIG-DANLLQTKVMALDDAK 698
F FH LL + I + L+ + +A +Q V D
Sbjct: 417 SNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGS 466
Score = 55.4 bits (133), Expect = 7e-08
Identities = 60/327 (18%), Positives = 111/327 (33%), Gaps = 119/327 (36%)
Query: 442 GQDAFLLYDTFGFPVEITKEV---AEEHGVSVDMKGFDIEMENQRRQSQAAHNAVKLSVD 498
G D LY T + ++V A+ H D GF I +N V L++
Sbjct: 1632 GMD---LYKTS----KAAQDVWNRADNH--FKDTYGFSI-------LDIVINNPVNLTIH 1675
Query: 499 DSADLAEKIPDTEFLGYDTLSAKAIVESLLVNGKPVIKVSKGSDVEVLLNRTPFYAESGG 558
+ ++I + Y + + IV+ L + + K ++ F
Sbjct: 1676 FGGEKGKRIRE----NYSAMIFETIVDGKLKT-EKIFK-----EINEHSTSYTFR----- 1720
Query: 559 QIGDYGFLYVTQGTNQQTA--VVEV---KDVKK-------------SLG---------SV 591
+ G L TQ Q A ++E +D+K SLG V
Sbjct: 1721 --SEKGLLSATQ--FTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADV 1776
Query: 592 F--------VHK-G-TIREGV--LEVGREVEAI--VDPKLRQRAKVHHTATHLLQAALKK 637
V G T++ V E+GR + ++P +V A Q AL+
Sbjct: 1777 MSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINP-----GRV---AASFSQEALQY 1828
Query: 638 VIGQETSQAGSLV--AFDRLRFDFNFHRPLLDT------ELEEIERLINGWIGDANLLQT 689
V+ + + G LV N++ + +L ++ + N+L
Sbjct: 1829 VVERVGKRTGWLVEIV--------NYNVE--NQQYVAAGDLRALDTVT-------NVLNF 1871
Query: 690 -KVMALDDAKRAGAIAMFGEKYGEQVK 715
K+ +D + ++++ E+V+
Sbjct: 1872 IKLQKIDIIELQKSLSL------EEVE 1892
Score = 50.0 bits (119), Expect = 3e-06
Identities = 48/255 (18%), Positives = 83/255 (32%), Gaps = 90/255 (35%)
Query: 1 MAHYYPSI----LPCGHFL--FKGAT----GVPSARSTSASVQPLTEEVEDKSQDFPSSG 50
+AHY + G KGAT G+ +A + + + D + F
Sbjct: 246 LAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAET---------DSWESF---F 293
Query: 51 DSIRK--RFLDFY-ASRGHKVLPSASLVP---ED--------PTVLLTIAGMLQFKPI-- 94
S+RK L F+ R ++ P+ SL P ED P+ +L+I+ + Q + +
Sbjct: 294 VSVRKAITVL-FFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQ-EQVQD 351
Query: 95 FLGKVPRQVPRAATSQRCI-RTNDVENVGRTSRHHTFFEMLGN----FSFGDYFKKEAI- 148
++ K +P Q I N G + + G + +K
Sbjct: 352 YVNKTNSHLPAG--KQVEISLVN-----GAKN-----LVVSGPPQSLYGLNLTLRKAKAP 399
Query: 149 ----QWAWEFS------TVEFGLPANRLWISV-----Y---------EDD-DEAFEIWNK 183
Q FS + F LP ++ +D K
Sbjct: 400 SGLDQSRIPFSERKLKFSNRF-LP-----VASPFHSHLLVPASDLINKDLVKNNVSFNAK 453
Query: 184 EVGVPVEHIKRMGAD 198
++ +PV G+D
Sbjct: 454 DIQIPVYDT-FDGSD 467
Score = 40.0 bits (93), Expect = 0.004
Identities = 43/261 (16%), Positives = 78/261 (29%), Gaps = 85/261 (32%)
Query: 171 YEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNS-G-------ATGPCGPCSEIYYDFHP 222
Y+ A ++WN+ AD++F ++ G P + F
Sbjct: 1636 YKTSKAAQDVWNR-------------ADNHFKDTYGFSILDIVINNP----VNLTIHFGG 1678
Query: 223 DRGCSDVDLGDDTRFI-EFYNLVFMQYNKKDDGSLEPLKQ-KNIDTGLGLERIARILQKV 280
++G + I E Y+ M + DG L+ K K I+ E +
Sbjct: 1679 EKG----------KRIRENYS--AMIFETIVDGKLKTEKIFKEIN-----EHSTSYTFRS 1721
Query: 281 PNN--YETDLIF--PIIKKASELANVSYAQSND---RTNLNLKII--GDH-------LRA 324
T F P + + A D + + G H L +
Sbjct: 1722 EKGLLSATQ--FTQPAL-----TL-MEKAAFEDLKSKGLIPADATFAG-HSLGEYAALAS 1772
Query: 325 I--VYLLSDGVFPSNIGRGYVVR---RLIRRAVRTGRLLGIKGDGRGNLEGAFLPSIAEK 379
+ V + V VV ++ AV L G S +++
Sbjct: 1773 LADVMSIESLV--------EVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQE 1824
Query: 380 AIELSTHIDSDVKAREQRILE 400
A++ ++ V R ++E
Sbjct: 1825 ALQ---YVVERVGKRTGWLVE 1842
Score = 38.9 bits (90), Expect = 0.008
Identities = 52/294 (17%), Positives = 80/294 (27%), Gaps = 93/294 (31%)
Query: 339 GRG---Y----VVRRLIRRA-VRTGRLLG--IKGDGRGN-------LEGAFLPSIAEKAI 381
G G Y + + RA G I N G I E
Sbjct: 1630 GMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYS 1689
Query: 382 ELSTHIDSDVKAREQRILEELKREELRFVQTLERGEKLLDQ-------MLAD--ALSRT- 431
+ D K + ++I +E+ E T + LL + A
Sbjct: 1690 AMIFETIVDGKLKTEKIFKEIN-EHSTSY-TFRSEKGLLSATQFTQPALTLMEKAAFEDL 1747
Query: 432 RESGSVPRLSGQDAFLLYDTF-GFPVEITKEVAEEHGVSVDMKGFDIEMENQRRQSQA-A 489
+ G +P DA F G H S+ G E + A A
Sbjct: 1748 KSKGLIP----ADAT-----FAG------------H--SL---G-----EY----A-ALA 1771
Query: 490 HNAVKLSVDDSADL--------AEKIPDTEFLGYDTLSAKAIVESLLVNGKPVIKVSKGS 541
A +S++ ++ +P E LG AI + +
Sbjct: 1772 SLADVMSIESLVEVVFYRGMTMQVAVPRDE-LGRSNYGMIAINPGRVAASFSQEALQYV- 1829
Query: 542 DVEVLLNRTPFYAE------SGGQIGDYGFLYVTQGTNQQTAVVEVKDVKKSLG 589
VE + RT + E Q YV G + A+ V +V +
Sbjct: 1830 -VERVGKRTGWLVEIVNYNVENQQ-------YVAAGDLR--ALDTVTNVLNFIK 1873
Score = 33.9 bits (77), Expect = 0.29
Identities = 72/418 (17%), Positives = 112/418 (26%), Gaps = 160/418 (38%)
Query: 32 VQPLTEEVEDKSQDFPSSGDSIRKRF---LDFYASRGHKVLPSASLVPEDPTVLLTIA-- 86
V L + + + + K F L+ + L + S P D LL+I
Sbjct: 184 VGDLIKFSAETLSELIRTTLDAEKVFTQGLNI-----LEWLENPSNTP-DKDYLLSIPIS 237
Query: 87 ----GMLQFKPIF-----LGKVP---RQVPRAATSQRCIRTNDVENVGRTSRHHTFFEML 134
G++Q LG P R + AT + + V T+
Sbjct: 238 CPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATG----HSQGL--V--TA---VAIAET 286
Query: 135 GNF-SFGDYFKKEAIQWAWEFSTVEFGL------PANRLWISVYEDDDEAFEIWNKEVGV 187
++ SF +K AI F G+ P L S+ ED E E GV
Sbjct: 287 DSWESFFVSVRK-AITVL--FFI---GVRCYEAYPNTSLPPSILEDSLENNE------GV 334
Query: 188 PVEHIKRMGADDNFWNSGATGPCGPCSEIYYDFHPDRGCSDVDLGDDTRFIEFYNLVFMQ 247
P P I + + ++ N
Sbjct: 335 P----------------------SPMLSI-------SNLTQEQV---QDYVNKTN----- 357
Query: 248 YNKKDDGSLEPLKQ-----KN-----IDTG--LGLERIARILQKVPNNYETD-------- 287
L KQ N + +G L + L+K D
Sbjct: 358 ------SHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSE 411
Query: 288 --LIF-----PIIKKA---SE-LANVSYAQSNDRTNLNLKIIGDHLRAIVYLLSDGVFPS 336
L F P+ + S L S + D N+ ++ VY DG S
Sbjct: 412 RKLKFSNRFLPVA--SPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDG---S 466
Query: 337 NI--GRGYVVRRLIRRAVR--------------------TGRLLGIKG------DGRG 366
++ G + R++ +R G G+ DG G
Sbjct: 467 DLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTG 524
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 59.5 bits (143), Expect = 4e-09
Identities = 99/673 (14%), Positives = 181/673 (26%), Gaps = 194/673 (28%)
Query: 127 HHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPANRLWISVYEDDDEAFEIWNKEVG 186
HH FE Y K+ + F A + D I +KE
Sbjct: 5 HHMDFET----GEHQYQYKDILS--------VF-EDAFVDNFDCKDVQDMPKSILSKEE- 50
Query: 187 VPVEHIKRMGADDN-----FWNSGATGPCGPCSEIYYDFHPDRGCSDVDLGDDTRFIEFY 241
++HI + FW + E+ F + L + +F+
Sbjct: 51 --IDHIIMSKDAVSGTLRLFWTLLSKQ-----EEMVQKFVEEV------LRINYKFL--- 94
Query: 242 NLVFMQYNKKDDGSLEPLKQKNIDTGLGLERIARILQKVPNNYE--TDLIFPIIKKASEL 299
+ P+K + + ++ N+ + ++ +L
Sbjct: 95 --------------MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL 140
Query: 300 ANVSYAQSNDRTNLNLKIIG-----------DHLRA--IVYLLSDGVFPSNIGRGYVVRR 346
A R N+ I G D + + + +F N+
Sbjct: 141 RQ---ALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPET 197
Query: 347 LIRRAVRTGRLLGIKGDGRGNLEGAFLPSIAEKAIELSTHIDSDVKAREQRILEELKREE 406
++ + + R + I+L H ++A +R+L+ E
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSD---------HSSNIKLRIH---SIQAELRRLLKSKPYEN 245
Query: 407 ----LRFVQTLERGE------KLL----DQMLADALS--RTRESGSVPRLSG------QD 444
L VQ + K+L + + D LS T +
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305
Query: 445 AFLLY---DTFGFPVEITKE-------VAEEHGVSVDMKGFDIEMEN-QRRQSQAAHNAV 493
L Y P E+ +AE ++ +N + +
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLSIIAES------IRDGLATWDNWKHVNCDKLTTII 359
Query: 494 KLSVD--DSADLAE------------KIPDTEFLGYDTLS-----AKAIVESLLVNGKPV 534
+ S++ + A+ + IP LS ++VN
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFPPSAHIP------TILLSLIWFDVIKSDVMVVVN---- 409
Query: 535 IKVSKGSDVEVLLNRTPFYAESGGQIGDYGFLYVTQGTNQQTAVVEVKDVKKSLGSVFVH 594
K+ K S L+ + P ES I + N+ +H
Sbjct: 410 -KLHKYS----LVEKQP--KESTISIPSIYLELKVKLENEYA----------------LH 446
Query: 595 KGTIREGVLEVGREVEAIVDPKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDR 654
+ + + + + ++ P L Q H HL + F
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQYF-YSHIGHHLKNI----------EHPERMTLFRM 495
Query: 655 LRFDFNFHRPLLDTELEEIERLINGWIGDANLLQT-----KVMALDDAK---RAGAIAMF 706
+ DF F L+ ++ N N LQ + +D K AI F
Sbjct: 496 VFLDFRF----LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF 551
Query: 707 GEKYGEQVKISSK 719
K E + I SK
Sbjct: 552 LPKIEENL-ICSK 563
Score = 52.5 bits (125), Expect = 4e-07
Identities = 84/584 (14%), Positives = 165/584 (28%), Gaps = 156/584 (26%)
Query: 33 QP--LTEEVEDKSQDFPSSGDSIRKRFLDFYASRGHKVLP-SASLVPEDPTVLLTIAGML 89
QP +T ++ + K + SR L +L+ P + I G+L
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKYNV----SRLQPYLKLRQALLELRPAKNVLIDGVL 159
Query: 90 QFKPIFLGKVPRQVPRAATSQRCIRTNDVE----------NVGRTSRHHTFFEMLGNFSF 139
GK + V+ N+ + T EML +
Sbjct: 160 GS-----GK---TWVALDV----CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207
Query: 140 ---GDYFKKEAIQWAWEFSTVEFGLPANRLWIS-VYED-----DDEAFEIWNKEVGVPVE 190
++ + + RL S YE+ + + N +
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN----VQNAKA----- 258
Query: 191 HIKRMGADDNFWNSGATGPCGPCSEIYYDFHPDRGCSDVDLGDDTRFIEFYNLVFMQYNK 250
WN+ F + C + TRF + + +
Sbjct: 259 -----------WNA---------------F--NLSCKILLT---TRFKQVTDFLSAATTT 287
Query: 251 KDDGSLEPLKQKNIDTGLGLERIARILQKVPNNYETDL------IFP-----IIKKASEL 299
+ + L + + +L K + DL P I + +
Sbjct: 288 H-------ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG 340
Query: 300 ANVS--YAQSN-DRTNLNLKIIGDHL-----RAIVYLLSDGVFPSNIGRGYVVRRLIRRA 351
+ N D+ ++ + L R + LS VFP + I
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS--VFPPSA--------HI--- 387
Query: 352 VRTGRLLGIKGDGRGNLEGAFLPSIAEKAIELSTHIDSDVKAREQRI--LEELKREELRF 409
LL + ++ + + + K + S ++ K I + + +L
Sbjct: 388 --PTILLSLIW---FDVIKSDVMVVVNKLHKYSL-VEKQPKESTISIPSIYLELKVKLEN 441
Query: 410 VQTLERGEKLLDQMLADALSRTRESGSVPRLSGQDAFLLYDTFGF---PVEITKEVAEEH 466
L R ++D + +T +S + F + G +E + +
Sbjct: 442 EYALHR--SIVDH---YNIPKTFDSDDLIPPYLDQYFYSH--IGHHLKNIEHPERMTLFR 494
Query: 467 GVSVDMKGFDIEMENQRRQSQAAHNAVKLSVDDSADL-------AEKIPDTEFLGYDTLS 519
V +D + F +E + R A NA ++ L + P E L
Sbjct: 495 MVFLDFR-F---LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNA--- 547
Query: 520 AKAIVESLLVNGKPVIKVSKGSD-VEVLLN--RTPFYAESGGQI 560
+ L + + SK +D + + L + E+ Q+
Sbjct: 548 ----ILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQV 587
Score = 52.2 bits (124), Expect = 6e-07
Identities = 89/597 (14%), Positives = 172/597 (28%), Gaps = 193/597 (32%)
Query: 213 CSEIYYDFHP----DRGCSDVDLGDDTRFI----EFYNLVFMQYNKKDD--------GSL 256
+I F + C DV D + I E +++ KD +L
Sbjct: 18 YKDILSVFEDAFVDNFDCKDVQ--DMPKSILSKEEIDHII----MSKDAVSGTLRLFWTL 71
Query: 257 EPLKQKNIDTGLGLER-IARILQKVPNNYETDLIFPIIK---KASELANVSYAQSNDRT- 311
KQ+ + +++ + +L+ NY + IK + + Y + DR
Sbjct: 72 L-SKQEEM-----VQKFVEEVLRI---NY--KFLMSPIKTEQRQPSMMTRMYIEQRDRLY 120
Query: 312 NLNLKIIGDH---------LRAIVYLLSDGVFPSNI------GRGYVVRRLIRRAVRTGR 356
N N + LR + L N+ G G + + +
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALLELRPA---KNVLIDGVLGSGKTW--VALDVCLSYK 175
Query: 357 LLGIKGD-------GRGNLEGAFLPSIAEKAIELSTHIDSDVKAREQRI------LEELK 403
+ N L E +L ID + +R + ++
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVL----EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231
Query: 404 REELRFVQTLERGEKLLDQMLADALSRTRESGSVPRLSGQDAFLLYDTFGF--PVEITKE 461
E R +++ LL L + V Q+A + F + +T
Sbjct: 232 AELRRLLKSKPYENCLLV--LLN----------V-----QNAKAW-NAFNLSCKILLT-- 271
Query: 462 VAEEHGVSVDMKGFDIEMENQRRQSQAAHNAVKLSVDDSADLAEKIPDTEFLGYDTLSAK 521
+ + D H+++ L+ D+ L K D L +
Sbjct: 272 -------TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP---QDLPRE 321
Query: 522 AIVESLLVNGKPVIKVSKGSDVEVLLNRTPFYAESGGQIGDYGFLYVTQGTNQQTAVV-- 579
+ + +I + L D + +V ++ T ++
Sbjct: 322 VLTTNPRRLS--II----AESIRDGLATW-----------DN-WKHVN--CDKLTTIIES 361
Query: 580 --------EVKDVKKSLGSVF---VHKGTIREGVLEV------GREVEAIVDPKLRQRA- 621
E + + L SVF H I +L + +V +V+ KL + +
Sbjct: 362 SLNVLEPAEYRKMFDRL-SVFPPSAH---IPTILLSLIWFDVIKSDVMVVVN-KLHKYSL 416
Query: 622 -----KVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLR--FDFN-FHRPLLDTELEEI 673
K + + LK + E + S+V + FD + P LD
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD------ 470
Query: 674 ERLINGW---IGDANLLQTKVMALDDAKRAGAIAMFGEKYGEQVKISSKMYVLWRFL 727
+ IG L + + + +F +++ +RFL
Sbjct: 471 ----QYFYSHIGHH---------LKNIEHPERMTLF-----------RMVFLDFRFL 503
Score = 37.1 bits (85), Expect = 0.023
Identities = 39/234 (16%), Positives = 72/234 (30%), Gaps = 80/234 (34%)
Query: 580 EVKDVKKSLGSVFVHKGTIREGVLEVGREVEAIVDPKLRQRAKVHHTATHLLQAALKKVI 639
+ KDV+ S+ + E++ I+ K + T L L
Sbjct: 34 DCKDVQDMPKSILSKE------------EIDHIIMSKDAV------SGTLRLFWTL---- 71
Query: 640 GQETSQAGSLVAF--DRLRFDFNF---------HRPLLDTEL--EEIERLING--WIGDA 684
+ Q + F + LR ++ F +P + T + E+ +RL N
Sbjct: 72 --LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY 129
Query: 685 NL--------LQTKVMALDDAKRAGAIAMFGEKYGEQV---------KISSKMY--VLW- 724
N+ L+ ++ L AK + G G+ K+ KM + W
Sbjct: 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLG--SGKTWVALDVCLSYKVQCKMDFKIFWL 187
Query: 725 ---------RFLVCLWNFV----------VEPMLTILLKSEPSKSFLSRVLHLE 759
L L + + I L+ ++ L R+L +
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK 241
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 37.6 bits (86), Expect = 0.004
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 14/44 (31%)
Query: 482 QRRQSQAAHNAVKLSVDDSADLAEKIPDTEFLGYDTLSAKAIVE 525
+++ + ++KL DDSA P L+ KA +E
Sbjct: 18 EKQALKKLQASLKLYADDSA------P--------ALAIKATME 47
>2iew_A Inositol polyphosphate multikinase; ATP-grAsp fold related,
transferase; 2.00A {Saccharomyces cerevisiae} PDB:
2if8_A*
Length = 363
Score = 33.3 bits (75), Expect = 0.24
Identities = 15/116 (12%), Positives = 31/116 (26%), Gaps = 17/116 (14%)
Query: 170 VYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGATGPCGPCSEIYYDFHPDRGCSDV 229
+YE D E +E+ N + + DD+ + +
Sbjct: 262 IYEGDPERWELLNDVDKLMRDDFIDDDDDDD------DNDDDDDDDAEGSSEGPKDKKTT 315
Query: 230 DLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERIARILQKVPNNYE 285
I+F + D+ + G+E + I K ++
Sbjct: 316 GSLSSMSLIDFAHSEITPGKGYDENVI-----------EGVETLLDIFMKFLEHHH 360
>1af8_A Actinorhodin polyketide synthase acyl carrier Pro; acyl carrier
protein, solution STR antibiotic biosynthesis; NMR
{Streptomyces coelicolor} SCOP: a.28.1.1 PDB: 2af8_A
2k0x_A* 2k0y_A 2kg6_A* 2kg8_A* 2kg9_A* 2kga_A* 2kgc_A*
2kgd_A* 2kge_A*
Length = 86
Score = 29.4 bits (66), Expect = 1.0
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 497 VDDSADLAEKIPDTEF--LGYDTLSAKAIVESL 527
D DL+ D F +GYD+L+ L
Sbjct: 20 ETDGTDLSGDFLDLRFEDIGYDSLALMETAARL 52
>1nq4_A Oxytetracycline polyketide synthase acyl carrier protein; solution
structure, dynamics, ACP, biosynthetic protein; NMR
{Streptomyces rimosus} SCOP: a.28.1.1
Length = 95
Score = 28.3 bits (63), Expect = 2.5
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 497 VDDSADLAEKIPDTEF--LGYDTLSAKAIVESL 527
++S DL + D F LGYD+L+ V +
Sbjct: 19 EEESIDLGGDVEDVAFDALGYDSLALLNTVGRI 51
>3osq_A Maltose-binding periplasmic protein, green fluore protein;
engineered protein, sensor protein, fluorescent protein,
MBP maltose sensor; HET: C12 MAL; 1.90A {Escherichia
coli}
Length = 661
Score = 29.8 bits (66), Expect = 3.9
Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 166 LWISVYEDDD---EAFEIWNKEVGVPVEHIKRMGADDNFWNSGATG 208
+WI+ + + E + + K+ G+ V ++ F ATG
Sbjct: 45 IWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATG 90
>4dxb_A RG13, maltose-binding periplasmic protein, beta-lactama chimera;
TEM, beta-lactamase, MBP, allosteric regulation, zinc
bindin maltose binding; 2.29A {Escherichia coli} PDB:
4dxc_A
Length = 637
Score = 29.2 bits (65), Expect = 5.6
Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 166 LWISVYEDDD---EAFEIWNKEVGVPVEHIKRMGADDNFWNSGATG 208
+WI+ + + E + + K+ G+ V ++ F ATG
Sbjct: 9 IWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATG 54
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.6 bits (63), Expect = 6.0
Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 4/60 (6%)
Query: 378 EKAIELSTHIDSDVKAREQRILEELKRE-ELRFVQTLERGEKLLDQMLA--DALSRTRES 434
E+ L +D+ K EQ E+ K++ E + E+ EK A + ++
Sbjct: 93 EQRKRLQ-ELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDA 151
Score = 27.8 bits (61), Expect = 9.6
Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 20/67 (29%)
Query: 392 KAREQR--ILEEL------KREELRFVQTLERGEKLLDQMLA---DALSRTRESGSVPRL 440
K RE++ L+EL +E R E+ +K L++ + + + + + R+
Sbjct: 89 KWREEQRKRLQELDAASKVMEQEWR-----EKAKKDLEEWNQRQSEQVEKNKINN---RI 140
Query: 441 SGQDAFL 447
+ AF
Sbjct: 141 A-DKAFY 146
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP:
a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Length = 549
Score = 29.2 bits (65), Expect = 6.1
Identities = 17/79 (21%), Positives = 26/79 (32%), Gaps = 2/79 (2%)
Query: 365 RGNLEGAFLPSIAEKAIELSTHIDSDVKAREQRILEELKR--EELRFVQTLERGEKLLDQ 422
R FL +A EL ID + + + L+ + L R + Q
Sbjct: 50 RLERIANFLRIYRRQASELGPLIDFFNYNNQSHLADFLEDYIDFAINEPDLLRPVVIAPQ 109
Query: 423 MLADALSRTRESGSVPRLS 441
L R G+VP+
Sbjct: 110 FSRQMLDRKLLLGNVPKQM 128
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase,
phosphoprotein, transferase; 2.40A {Geobacter
sulfurreducens}
Length = 234
Score = 28.0 bits (63), Expect = 9.6
Identities = 8/26 (30%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Query: 453 GFPVEITKEVAEEHGVSVDMK--GFD 476
G+ VE+T+ +AE G++V+ + +
Sbjct: 35 GYNVELTRAIAEVMGMTVEFRLGAWS 60
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.399
Gapped
Lambda K H
0.267 0.0750 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,898,423
Number of extensions: 767581
Number of successful extensions: 2051
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1980
Number of HSP's successfully gapped: 43
Length of query: 759
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 658
Effective length of database: 3,881,772
Effective search space: 2554205976
Effective search space used: 2554205976
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.2 bits)