Query 004367
Match_columns 759
No_of_seqs 194 out of 232
Neff 4.9
Searched_HMMs 46136
Date Thu Mar 28 22:13:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004367.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004367hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04782 DUF632: Protein of un 100.0 5E-111 1E-115 894.4 34.0 311 328-676 1-312 (312)
2 PF04783 DUF630: Protein of un 99.9 1E-27 2.2E-32 198.3 7.9 60 1-60 1-60 (60)
3 cd07307 BAR The Bin/Amphiphysi 85.4 22 0.00047 34.1 13.4 105 447-551 79-187 (194)
4 PF03114 BAR: BAR domain; Int 76.2 66 0.0014 32.0 13.6 94 449-550 119-219 (229)
5 smart00721 BAR BAR domain. 74.6 48 0.001 33.9 12.3 88 461-548 137-226 (239)
6 cd07599 BAR_Rvs167p The Bin/Am 72.3 1.2E+02 0.0025 31.4 14.5 69 579-659 16-85 (216)
7 KOG1924 RhoA GTPase effector D 68.4 25 0.00055 43.2 9.5 37 326-362 744-780 (1102)
8 cd07673 F-BAR_FCHO2 The F-BAR 67.0 1.8E+02 0.0038 31.6 15.0 84 448-540 117-200 (269)
9 cd07596 BAR_SNX The Bin/Amphip 65.5 72 0.0016 31.9 11.1 56 468-523 120-176 (218)
10 KOG0251 Clathrin assembly prot 62.4 2.5E+02 0.0054 33.4 16.0 186 513-752 60-261 (491)
11 PF10475 DUF2450: Protein of u 62.0 2E+02 0.0044 31.2 14.4 133 460-605 72-207 (291)
12 PF09325 Vps5: Vps5 C terminal 62.0 82 0.0018 32.3 11.0 91 468-558 138-229 (236)
13 cd07653 F-BAR_CIP4-like The F- 61.0 1.4E+02 0.003 31.3 12.7 118 595-751 28-153 (251)
14 cd07603 BAR_ACAPs The Bin/Amph 59.8 2.2E+02 0.0048 29.6 14.3 62 580-681 17-78 (200)
15 cd07591 BAR_Rvs161p The Bin/Am 59.2 2.1E+02 0.0046 30.2 13.5 58 579-658 25-82 (224)
16 cd07651 F-BAR_PombeCdc15_like 59.1 84 0.0018 32.9 10.6 71 465-540 121-200 (236)
17 cd07636 BAR_GRAF The Bin/Amphi 58.7 2.5E+02 0.0053 29.7 14.5 42 578-619 15-56 (207)
18 cd07637 BAR_ACAP3 The Bin/Amph 58.1 2.4E+02 0.0051 29.5 13.5 25 658-682 55-79 (200)
19 cd07657 F-BAR_Fes_Fer The F-BA 58.0 1.6E+02 0.0034 31.4 12.5 118 588-749 21-151 (237)
20 cd07648 F-BAR_FCHO The F-BAR ( 57.5 84 0.0018 33.4 10.4 49 467-515 125-173 (261)
21 cd07686 F-BAR_Fer The F-BAR (F 56.1 2.4E+02 0.0052 30.3 13.4 51 446-498 7-61 (234)
22 KOG2675 Adenylate cyclase-asso 55.9 29 0.00063 40.1 6.8 26 36-61 183-208 (480)
23 PF13805 Pil1: Eisosome compon 55.3 3.2E+02 0.007 30.1 15.6 102 479-594 152-265 (271)
24 cd07600 BAR_Gvp36 The Bin/Amph 54.1 2.9E+02 0.0063 29.7 13.7 135 592-757 36-173 (242)
25 COG5085 Predicted membrane pro 48.0 22 0.00048 37.3 4.0 39 640-678 146-187 (230)
26 KOG4503 Uncharacterized conser 48.0 22 0.00048 37.3 4.0 39 640-678 146-187 (230)
27 cd07659 BAR_PICK1 The Bin/Amph 47.4 1.6E+02 0.0035 31.2 10.1 105 516-620 2-123 (215)
28 cd07685 F-BAR_Fes The F-BAR (F 46.2 4.2E+02 0.0091 28.7 14.1 125 592-752 25-159 (237)
29 cd07602 BAR_RhoGAP_OPHN1-like 45.6 3.9E+02 0.0085 28.2 15.3 69 579-681 16-84 (207)
30 smart00872 Alpha-mann_mid Alph 44.5 68 0.0015 28.0 6.1 53 495-552 6-58 (79)
31 KOG1924 RhoA GTPase effector D 43.9 47 0.001 41.1 6.3 23 517-539 803-825 (1102)
32 cd07659 BAR_PICK1 The Bin/Amph 43.5 1.5E+02 0.0032 31.5 9.1 65 464-528 105-169 (215)
33 PRK11546 zraP zinc resistance 42.7 61 0.0013 32.3 6.0 51 468-527 53-103 (143)
34 PF12408 DUF3666: Ribose-5-pho 38.6 22 0.00048 29.2 1.9 27 326-352 4-30 (48)
35 cd07618 BAR_Rich1 The Bin/Amph 38.1 5.5E+02 0.012 27.8 13.0 16 525-540 192-207 (246)
36 cd07656 F-BAR_srGAP The F-BAR 37.0 5.5E+02 0.012 27.5 14.0 142 577-753 13-160 (241)
37 smart00509 TFS2N Domain in the 36.9 87 0.0019 27.5 5.5 55 494-550 18-74 (75)
38 cd07635 BAR_GRAF2 The Bin/Amph 35.0 5.7E+02 0.012 27.1 14.7 40 579-618 16-55 (207)
39 cd07633 BAR_OPHN1 The Bin/Amph 34.7 5.9E+02 0.013 27.1 14.0 68 580-681 17-84 (207)
40 KOG2008 BTK-associated SH3-dom 34.2 1.6E+02 0.0035 33.1 8.0 81 445-528 149-233 (426)
41 cd07647 F-BAR_PSTPIP The F-BAR 34.0 5.8E+02 0.013 26.9 12.3 73 445-518 82-172 (239)
42 PF02970 TBCA: Tubulin binding 33.6 2.8E+02 0.0061 25.3 8.4 54 471-524 20-80 (90)
43 cd07664 BAR_SNX2 The Bin/Amphi 32.4 6E+02 0.013 27.2 11.9 73 470-547 138-210 (234)
44 cd07674 F-BAR_FCHO1 The F-BAR 32.3 5.2E+02 0.011 27.7 11.6 53 466-525 124-176 (261)
45 cd07676 F-BAR_FBP17 The F-BAR 32.0 6.7E+02 0.014 27.0 12.3 120 595-751 28-155 (253)
46 cd07627 BAR_Vps5p The Bin/Amph 32.0 4.2E+02 0.0092 27.5 10.6 74 467-540 117-198 (216)
47 PF08285 DPM3: Dolichol-phosph 31.8 53 0.0011 30.3 3.4 36 714-750 52-87 (91)
48 cd07634 BAR_GAP10-like The Bin 31.3 6.6E+02 0.014 26.6 14.2 40 579-618 16-55 (207)
49 PF10368 YkyA: Putative cell-w 30.1 3.4E+02 0.0074 28.4 9.5 104 445-560 36-143 (204)
50 cd07675 F-BAR_FNBP1L The F-BAR 29.8 6.6E+02 0.014 27.3 11.8 38 710-751 117-154 (252)
51 cd07678 F-BAR_FCHSD1 The F-BAR 27.5 1.2E+02 0.0027 32.9 5.9 37 709-749 119-155 (263)
52 PF09241 Herp-Cyclin: Herpesvi 27.5 33 0.00072 31.3 1.3 14 527-540 18-31 (106)
53 PF08655 DASH_Ask1: DASH compl 26.9 1.7E+02 0.0037 25.7 5.5 49 502-550 2-56 (66)
54 PF12325 TMF_TATA_bd: TATA ele 26.6 3.9E+02 0.0085 25.9 8.5 85 444-528 19-104 (120)
55 PF06404 PSK: Phytosulfokine p 25.2 35 0.00075 30.8 1.0 12 30-42 63-74 (81)
56 TIGR03545 conserved hypothetic 24.8 1.3E+03 0.028 27.9 14.1 142 446-609 165-311 (555)
57 PF09321 DUF1978: Domain of un 24.7 9.3E+02 0.02 26.2 12.7 76 532-610 94-178 (241)
58 cd07639 BAR_ACAP1 The Bin/Amph 24.7 8.3E+02 0.018 25.7 12.6 34 580-613 17-50 (200)
59 cd07610 FCH_F-BAR The Extended 24.4 6.9E+02 0.015 24.6 12.4 90 450-548 88-178 (191)
60 PF06989 BAALC_N: BAALC N-term 24.4 33 0.00071 28.2 0.6 11 1-11 1-11 (53)
61 cd07655 F-BAR_PACSIN The F-BAR 23.6 6.6E+02 0.014 26.9 10.5 18 466-483 134-151 (258)
62 cd07671 F-BAR_PSTPIP1 The F-BA 23.2 5.1E+02 0.011 27.7 9.5 88 450-547 90-192 (242)
63 cd00183 TFIIS_I N-terminal dom 22.9 2E+02 0.0044 25.2 5.3 56 492-549 18-75 (76)
64 cd07676 F-BAR_FBP17 The F-BAR 21.7 7.1E+02 0.015 26.8 10.2 96 446-542 98-216 (253)
65 smart00146 PI3Kc Phosphoinosit 21.5 85 0.0018 32.2 3.2 84 523-618 8-102 (202)
66 PF10428 SOG2: RAM signalling 20.9 8.5E+02 0.018 28.5 11.4 90 458-551 302-405 (445)
67 cd07671 F-BAR_PSTPIP1 The F-BA 20.8 1E+03 0.023 25.4 13.0 113 593-747 26-143 (242)
68 cd07623 BAR_SNX1_2 The Bin/Amp 20.7 9.8E+02 0.021 25.0 12.4 87 469-560 127-214 (224)
69 cd07675 F-BAR_FNBP1L The F-BAR 20.1 1.1E+03 0.025 25.5 11.6 94 466-560 128-241 (252)
No 1
>PF04782 DUF632: Protein of unknown function (DUF632); InterPro: IPR006867 This conserved region contains a leucine zipper-like domain. The proteins are found only in plants and their functions are unknown.
Probab=100.00 E-value=4.8e-111 Score=894.39 Aligned_cols=311 Identities=49% Similarity=0.791 Sum_probs=286.0
Q ss_pred cHHHHHHHHHHHHHHHhccCCcchhhhhcccCCCCCcccccCCccchhhhhhhhcccCCCCCCCCCCccccccccccccc
Q 004367 328 DFFSSMKDIELLFIKASDSGKEVPRMLEANKLHFRPIFEEKDSDSMASTILKACFSCGEDPPQVQEEPVQTDVKYLTWHR 407 (759)
Q Consensus 328 dl~evvkeIe~~F~kAsesG~eVS~mLEa~K~~y~~~~~~~~~~s~~~~~~~~~~~c~~~~~~~~~~p~~~~~k~itW~r 407 (759)
||++||||||++|+|||+||+|||+||||+|++||+++..... ...++.+++++++|+|
T Consensus 1 dl~ev~kei~~~F~kAs~sg~eVs~lLE~~k~~~~~~~~~~~~---------------------~~~~s~~~~~~~~w~~ 59 (312)
T PF04782_consen 1 DLLEVVKEIDDYFLKASESGKEVSRLLEAGKIHYHSNFSDLKG---------------------KVDHSSRVLSPISWSR 59 (312)
T ss_pred CHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCCCCCcccccccc---------------------cccchhhhccccccCC
Confidence 7999999999999999999999999999999999998765211 0112344667899999
Q ss_pred cccCCCCCCCCCCCCCCccccccccCCccccccccccchhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhc
Q 004367 408 TTSSRSSSSRNPLGANSKDDVEDLTGDIFDSIHMISSSHASTLDRLYAWERKLYDEVKASEMIRREYDSKCRILRQLESK 487 (759)
Q Consensus 408 s~sS~ssss~~pl~~~~~~d~~~~~~d~~ee~~m~sgshsSTLdrLyAWEKKLY~EVKa~E~lR~~yeKKc~~Lr~qd~r 487 (759)
|++|+. ....++++++.||.+|+||||||||||||||||+|||++|+||++|||||++||+||+|
T Consensus 60 s~~s~~---------------~~~~~~~~~~~~~~~gshssTLdkLyaWEKKLY~EVKa~E~~r~~yeKK~~~Lr~~d~k 124 (312)
T PF04782_consen 60 SSSSRI---------------SNSDSDFDEEECMGSGSHSSTLDKLYAWEKKLYDEVKAEEKLRIEYEKKCKQLRKQDAK 124 (312)
T ss_pred CCCCcc---------------cccccCcCcccCcccchHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHhC
Confidence 876541 11223455778999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCC
Q 004367 488 GVSSHKIDKTRAVVKDLHSRIKVAIHRIDSISKRIEELRDKELQPQLEDLIEGLSRMWEVMFECHKLQFQVISVAYNNAH 567 (759)
Q Consensus 488 Gad~~kIDKTRa~Vk~L~TrI~VaiqsvdsiS~~I~kLRDeEL~PQL~ELi~GL~rMWk~M~ecHq~Q~~ii~~~~~~~~ 567 (759)
|+++.+|||||++|++|+|||+|+||+||+||++|+|||||||||||+|||+||+||||+|+||||+|++||+++++++.
T Consensus 125 g~~~~kidkTra~v~~L~tri~Vaiq~v~siS~~I~kLRDeEL~PQL~eLi~Gl~~MWk~M~ecHq~Q~~ii~~~k~l~~ 204 (312)
T PF04782_consen 125 GADSSKIDKTRASVKDLHTRIRVAIQSVDSISKRIEKLRDEELYPQLVELIQGLMRMWKSMLECHQKQFQIIQEAKSLDS 204 (312)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999997765
Q ss_pred C-cccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCCcccccCCCCCCCCCCCCCCChHHHH
Q 004367 568 S-KISIKSDSHRQITIHLENELSSLSSSFTKWISAQKFYLQAINNWLVKCVSLPQKSSRRKRRVPAPPPLRNFGPPIYAT 646 (759)
Q Consensus 568 ~-~~~~~se~hr~at~qLE~El~~W~ssF~~wI~aQk~YV~aLngWL~~cl~~~~e~~~~~~~~~s~~p~r~~aPpIf~l 646 (759)
. ...+++++||+||+|||.||++|++||++||++||+||+||||||++||.++++.++++++++| |+|.++||||+|
T Consensus 205 ~~~~~~~s~~h~~at~~Le~el~~W~~sF~~~i~~Qk~YV~aLn~WL~~~l~~~~~~~~~~~~~~s--p~~~~aPpIf~l 282 (312)
T PF04782_consen 205 SPSNEPTSESHRQATLQLEAELQNWHSSFCKWIKAQKSYVKALNGWLKLCLMQEPEETSDGRPPSS--PRRSGAPPIFVL 282 (312)
T ss_pred cccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCC--ccccCCCcHHHH
Confidence 5 4689999999999999999999999999999999999999999999999999999999988888 899999999999
Q ss_pred HHHHHHhhccCChHHHHHHHHHHHHHHhHH
Q 004367 647 CSVWLDLLDWLPSKELTDSIKSLASETSHF 676 (759)
Q Consensus 647 C~~W~~aldrlp~k~v~~AIk~f~~~v~~l 676 (759)
|++|+++||+||+++|++|||+|+++||+|
T Consensus 283 C~~W~~aLd~lp~k~v~~AIk~f~~~v~~i 312 (312)
T PF04782_consen 283 CNDWSQALDRLPDKEVSEAIKSFAAVVHHI 312 (312)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999986
No 2
>PF04783 DUF630: Protein of unknown function (DUF630); InterPro: IPR006868 This region is sometimes found at the N terminus of putative plant bZIP proteins IPR006867 from INTERPRO. The function of this conserved region is not known.
Probab=99.94 E-value=1e-27 Score=198.34 Aligned_cols=60 Identities=55% Similarity=0.927 Sum_probs=59.0
Q ss_pred CCCCcCCccchhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 004367 1 MGVSSSKLEEDKALQLCRERKKFVRQALDGRCSLAATHVMYVQSLRNTGTALRKFVEPEG 60 (759)
Q Consensus 1 MGc~~Sk~d~~~av~lCreR~~~~k~Av~~R~~laaaH~~Y~~sL~~~g~aL~~f~~~~~ 60 (759)
|||++||+|++|||++|||||+|||+||++||+||+||++|++|||+||.||++|+++|+
T Consensus 1 MGC~~SK~d~eeaV~~CkeRkr~~k~Av~~R~~lAaaH~aY~~SLr~~g~aL~~F~~~et 60 (60)
T PF04783_consen 1 MGCSQSKLDDEEAVSLCKERKRLMKQAVDARYALAAAHAAYIQSLRNVGAALRQFAEGET 60 (60)
T ss_pred CCCCcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999999999999999999999999884
No 3
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=85.44 E-value=22 Score=34.11 Aligned_cols=105 Identities=18% Similarity=0.277 Sum_probs=70.3
Q ss_pred hhHHHHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHHHhhhhcCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004367 447 ASTLDRLYAWERKLYDEV----KASEMIRREYDSKCRILRQLESKGVSSHKIDKTRAVVKDLHSRIKVAIHRIDSISKRI 522 (759)
Q Consensus 447 sSTLdrLyAWEKKLY~EV----Ka~E~lR~~yeKKc~~Lr~qd~rGad~~kIDKTRa~Vk~L~TrI~VaiqsvdsiS~~I 522 (759)
..-++-|-.|-++.+..| |.-++.|..||.....+.++-.++.+..++..+...+.....+..-.-.-+-..-..+
T Consensus 79 ~~v~~pL~~~~~~~~~~~~~~~k~~~~~~~~yd~~~~k~~~~~~~~~~~~~l~~~~~~~~~ar~~y~~~~~~~~~~l~~~ 158 (194)
T cd07307 79 NKVIEPLKEYLKKDLKEIKKRRKKLDKARLDYDAAREKLKKLRKKKKDSSKLAEAEEELQEAKEKYEELREELIEDLNKL 158 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334466666664544444 4778899999999999998887776667777776666666665555444433333444
Q ss_pred hhhhccchhhHHHHHHHHHHHhHHHHHHH
Q 004367 523 EELRDKELQPQLEDLIEGLSRMWEVMFEC 551 (759)
Q Consensus 523 ~kLRDeEL~PQL~ELi~GL~rMWk~M~ec 551 (759)
..-|-.++.+.|..+++.....|+.+++-
T Consensus 159 ~~~~~~~~~~~L~~~~~~q~~~~~~~~~~ 187 (194)
T cd07307 159 EEKRKELFLSLLLSFIEAQSEFFKEVLKI 187 (194)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 44444567888888888877777766553
No 4
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=76.23 E-value=66 Score=31.96 Aligned_cols=94 Identities=23% Similarity=0.416 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHH----HhhhHHHHHHHHHHHHHHHhhhhcCCC---chhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004367 449 TLDRLYAWERKLYDE----VKASEMIRREYDSKCRILRQLESKGVS---SHKIDKTRAVVKDLHSRIKVAIHRIDSISKR 521 (759)
Q Consensus 449 TLdrLyAWEKKLY~E----VKa~E~lR~~yeKKc~~Lr~qd~rGad---~~kIDKTRa~Vk~L~TrI~VaiqsvdsiS~~ 521 (759)
.++.|--+= ++|++ +|..+..|+.||+-...+.++..++.. ..+++.++..-..+...+...+..
T Consensus 119 vi~pl~~~~-~~~~~i~~~~kkr~~~~ldyd~~~~k~~k~~~~~~~~~~~~~l~~a~~~f~~~~~~l~~~l~~------- 190 (229)
T PF03114_consen 119 VIDPLKEFL-KEFKEIKKLIKKREKKRLDYDSARSKLEKLRKKKSKSSKEEKLEEAKEEFEALNEELKEELPK------- 190 (229)
T ss_dssp THHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTSSBTHHHHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 344554444 55554 457788999999999999988866654 456666666666666666655553
Q ss_pred hhhhhccchhhHHHHHHHHHHHhHHHHHH
Q 004367 522 IEELRDKELQPQLEDLIEGLSRMWEVMFE 550 (759)
Q Consensus 522 I~kLRDeEL~PQL~ELi~GL~rMWk~M~e 550 (759)
|...|.+-|-++|..+|.......+.+++
T Consensus 191 l~~~~~~~l~~~l~~~i~~q~~~~~~~~~ 219 (229)
T PF03114_consen 191 LFAKRQDILEPCLQSFIEAQLQYFQQLYQ 219 (229)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777889999999987776666654
No 5
>smart00721 BAR BAR domain.
Probab=74.55 E-value=48 Score=33.86 Aligned_cols=88 Identities=15% Similarity=0.104 Sum_probs=58.1
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHhhhhcCCCch--hhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHH
Q 004367 461 YDEVKASEMIRREYDSKCRILRQLESKGVSSH--KIDKTRAVVKDLHSRIKVAIHRIDSISKRIEELRDKELQPQLEDLI 538 (759)
Q Consensus 461 Y~EVKa~E~lR~~yeKKc~~Lr~qd~rGad~~--kIDKTRa~Vk~L~TrI~VaiqsvdsiS~~I~kLRDeEL~PQL~ELi 538 (759)
-+.+|--+..|+.||..-..|.++..++.... ++.+++..++....+..-.-.-+-.---.+...|.+.+.|+|..|+
T Consensus 137 ~~~~kk~~~~~lDyD~~~~kl~~~~~~~~~~~~~kl~~~e~el~~ak~~fe~~~~~l~~~l~~l~~~~~~~~~~~l~~~~ 216 (239)
T smart00721 137 KKARKKLERKLLDYDSARHKLKKAKKSKEKKKDEKLAKAEEELRKAKQEFEESNAQLVEELPQLVASRVDFFVNCLQALI 216 (239)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHH
Confidence 34456788999999999988877755543322 6777777777666666654444444444556667777888888888
Q ss_pred HHHHHhHHHH
Q 004367 539 EGLSRMWEVM 548 (759)
Q Consensus 539 ~GL~rMWk~M 548 (759)
..-..-++.+
T Consensus 217 ~aq~~y~~~~ 226 (239)
T smart00721 217 EAQLNFHRES 226 (239)
T ss_pred HHHHHHHHHH
Confidence 7655444433
No 6
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=72.31 E-value=1.2e+02 Score=31.44 Aligned_cols=69 Identities=13% Similarity=0.102 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCCcccccCCCCCCCCCCCC-CCChHHHHHHHHHHhhccC
Q 004367 579 QITIHLENELSSLSSSFTKWISAQKFYLQAINNWLVKCVSLPQKSSRRKRRVPAPPPLRN-FGPPIYATCSVWLDLLDWL 657 (759)
Q Consensus 579 ~at~qLE~El~~W~ssF~~wI~aQk~YV~aLngWL~~cl~~~~e~~~~~~~~~s~~p~r~-~aPpIf~lC~~W~~aldrl 657 (759)
..+..|-.++..|..++....++|..+++++.+=.. ++....+. ++.. ..+.....|.+|...+..|
T Consensus 16 ~~~~kL~k~~k~y~~a~~~l~~~~~~~~~~~~~ly~-p~~~~~~~-----------~~~~~~~~~~~~~~~~y~~~~~~l 83 (216)
T cd07599 16 KSLKKLIEQSKAFRDSWRSILTHQIAFAKEFAELYD-PIVGPKES-----------VGSHPAPESTLARLSRYVKALEEL 83 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CcCCCCcC-----------cCCCCCcHHHHHHHHHHHHHHHHH
Confidence 367788999999999999999999999998887554 22211111 1111 1455677899999998888
Q ss_pred Ch
Q 004367 658 PS 659 (759)
Q Consensus 658 p~ 659 (759)
-.
T Consensus 84 ~~ 85 (216)
T cd07599 84 KK 85 (216)
T ss_pred HH
Confidence 43
No 7
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=68.44 E-value=25 Score=43.19 Aligned_cols=37 Identities=11% Similarity=0.227 Sum_probs=30.2
Q ss_pred CccHHHHHHHHHHHHHHHhccCCcchhhhhcccCCCC
Q 004367 326 SKDFFSSMKDIELLFIKASDSGKEVPRMLEANKLHFR 362 (759)
Q Consensus 326 ~kdl~evvkeIe~~F~kAsesG~eVS~mLEa~K~~y~ 362 (759)
....+.-+.+|+..|.--++.-.=|.+|+++.+++.+
T Consensus 744 e~E~l~~L~e~Kaeye~l~e~EQF~vvm~~vkrL~pR 780 (1102)
T KOG1924|consen 744 EQEQLNKLSELKAEYEDLPEPEQFVVVMSQVKRLRPR 780 (1102)
T ss_pred CHHHHHHHHHHHHhccCCCCHHHHhHHHhhccccChh
Confidence 4567778888888888888888889999999888753
No 8
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=66.97 E-value=1.8e+02 Score=31.56 Aligned_cols=84 Identities=14% Similarity=0.249 Sum_probs=53.5
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhcCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 004367 448 STLDRLYAWERKLYDEVKASEMIRREYDSKCRILRQLESKGVSSHKIDKTRAVVKDLHSRIKVAIHRIDSISKRIEELRD 527 (759)
Q Consensus 448 STLdrLyAWEKKLY~EVKa~E~lR~~yeKKc~~Lr~qd~rGad~~kIDKTRa~Vk~L~TrI~VaiqsvdsiS~~I~kLRD 527 (759)
.+++.+..| .+++ ++-++-|..|+..|+..-++-.-|+....|||++.-+++....+..+++..+.+-. +=
T Consensus 117 ~~~~~~~~~-~~~~---~~~~KaK~~Y~~~c~e~e~~~~~~~t~k~leK~~~k~~ka~~~Y~~~v~~l~~~~~-----~~ 187 (269)
T cd07673 117 GTLEAVQNI-QSIT---QALQKSKENYNAKCLEQERLKKEGATQREIEKAAVKSKKATESYKLYVEKYALAKA-----DF 187 (269)
T ss_pred hHHHHHHHH-HHHH---HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HH
Confidence 456666666 4444 45567799999999877665445566677777777777766666666655554311 23
Q ss_pred cchhhHHHHHHHH
Q 004367 528 KELQPQLEDLIEG 540 (759)
Q Consensus 528 eEL~PQL~ELi~G 540 (759)
++-+|+..+-+|-
T Consensus 188 ~~~m~~~~~~~Q~ 200 (269)
T cd07673 188 EQKMTETAQKFQD 200 (269)
T ss_pred HHHHHHHHHHHHH
Confidence 5566666665554
No 9
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=65.46 E-value=72 Score=31.87 Aligned_cols=56 Identities=20% Similarity=0.342 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHhhhhcCC-CchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004367 468 EMIRREYDSKCRILRQLESKGV-SSHKIDKTRAVVKDLHSRIKVAIHRIDSISKRIE 523 (759)
Q Consensus 468 E~lR~~yeKKc~~Lr~qd~rGa-d~~kIDKTRa~Vk~L~TrI~VaiqsvdsiS~~I~ 523 (759)
+.+.....+|-.+|-++...+. ...+|++.+..|..++.++..+..-.+.|+.+|.
T Consensus 120 ~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i~~~~~ 176 (218)
T cd07596 120 QSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYEEISERLK 176 (218)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566777777777777665 7789999999999999999999999999888765
No 10
>KOG0251 consensus Clathrin assembly protein AP180 and related proteins, contain ENTH domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=62.35 E-value=2.5e+02 Score=33.36 Aligned_cols=186 Identities=13% Similarity=0.111 Sum_probs=98.4
Q ss_pred HHHHHHHHHhhhhhccchhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCCcccCCChhHHHHHHHHHHHHHHHH
Q 004367 513 HRIDSISKRIEELRDKELQPQLEDLIEGLSRMWEVMFECHKLQFQVISVAYNNAHSKISIKSDSHRQITIHLENELSSLS 592 (759)
Q Consensus 513 qsvdsiS~~I~kLRDeEL~PQL~ELi~GL~rMWk~M~ecHq~Q~~ii~~~~~~~~~~~~~~se~hr~at~qLE~El~~W~ 592 (759)
..|++++.|+++=||==.-=.-+=|||+|++ |-...-.....+........-..|.+ ..-.
T Consensus 60 ~~v~aLs~Rl~~TrnW~VAlKsLIliH~ll~--------~G~~~f~~~l~~~~~~l~lS~F~d~s-----------~~~~ 120 (491)
T KOG0251|consen 60 SCVHALSERLNKTRNWTVALKALILIHRLLK--------EGDPSFEQELLSRNLILNLSDFRDKS-----------SSLT 120 (491)
T ss_pred HHHHHHHHHhCCCcceeehHHHHHHHHHHHh--------cCcHHHHHHHHhcccccchhhhhccc-----------cccc
Confidence 5678888888888876555555566666554 21111111111111111111111111 1112
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhhcCCCCcccccCCCCCCCCCCCCCCChHHHH--HHHHHHhhccC----------ChH
Q 004367 593 SSFTKWISAQKFYLQAINNWLVKCVSLPQKSSRRKRRVPAPPPLRNFGPPIYAT--CSVWLDLLDWL----------PSK 660 (759)
Q Consensus 593 ssF~~wI~aQk~YV~aLngWL~~cl~~~~e~~~~~~~~~s~~p~r~~aPpIf~l--C~~W~~aldrl----------p~k 660 (759)
--|..||-..-.|+.-.-.|.+.+-.........+... -.+...|+...| -.-|..-||+| -..
T Consensus 121 ~d~safVR~Ya~YLderl~~~~~~~~d~~~~~~~~~k~----~~~~~~~~~~~l~~i~~LQ~lld~ll~~~p~~~~~~N~ 196 (491)
T KOG0251|consen 121 WDMSAFVRTYALYLDERLECYRVLGFDIEKVKRGKEKT----KDRSSKSTDKLLKTIPKLQNLLDRLLKCRPTGSALNNG 196 (491)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHhccccccccCccccc----ccccccchHHHHHHHHHHHHHHHHHHcCCCCchhhcCc
Confidence 35788998888899888888887765443211111000 011122333322 22255555544 233
Q ss_pred HHHHHHHHHHHHHhHHhHhhhhhhcCCCChhhhhhhccccccccccchhhhhccHHHHHHHHhhh----hHHHHHHHHHH
Q 004367 661 ELTDSIKSLASETSHFLPRQEKNQGKSGSETAVNLLADDASEDWISGFDRFRSSLVGFLGQLNNF----SENSVQMYADL 736 (759)
Q Consensus 661 ~v~~AIk~f~~~v~~l~~qQe~~~~k~~~~~~~~~~~~~~~~~~~~~~~~lq~~L~~~l~~L~~f----s~~S~k~yeel 736 (759)
.|..|+.-++.+.-.|+ ..++.++..+|+..-.. +..++++|..+
T Consensus 197 lI~~A~~lvvkdsf~ly-------------------------------~~i~~gi~~Llekffem~~~~a~~al~iykr~ 245 (491)
T KOG0251|consen 197 LIIEAFELVVKDSFKLY-------------------------------AAINDGIINLLEKFFEMSKHDAIKALDIYKRF 245 (491)
T ss_pred HHHHHHHHHHHHHHHHH-------------------------------HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 34444444444443333 35777777777774443 67777899999
Q ss_pred HHHHHHHHHHhhhhhh
Q 004367 737 KKAIQDAKIKYDELVN 752 (759)
Q Consensus 737 ~~~~e~~k~~y~~~~~ 752 (759)
.++.|.--.-|..|+.
T Consensus 246 ~~q~e~L~~f~~~ck~ 261 (491)
T KOG0251|consen 246 LSQTEKLSEFLKVCKS 261 (491)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999988777777765
No 11
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=62.01 E-value=2e+02 Score=31.24 Aligned_cols=133 Identities=20% Similarity=0.347 Sum_probs=91.4
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHhhhhc-CCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHH
Q 004367 460 LYDEVKASEMIRREYDSKCRILRQLESK-GVSSHKIDKTRAVVKDLHSRIKVAIHRIDSISKRIEELRDKELQPQLEDLI 538 (759)
Q Consensus 460 LY~EVKa~E~lR~~yeKKc~~Lr~qd~r-Gad~~kIDKTRa~Vk~L~TrI~VaiqsvdsiS~~I~kLRDeEL~PQL~ELi 538 (759)
|.+++...=..-..-.++.+..++.-.+ |-.-....+.|..++.|...+. .|+.|-.+-.+|+.|=.+.=||.=++||
T Consensus 72 l~~~l~~a~~~~~~~R~~L~~~~~~~~~~~L~Il~~~rkr~~l~~ll~~L~-~i~~v~~~~~~l~~ll~~~dy~~Al~li 150 (291)
T PF10475_consen 72 LQDELEEALVICKNLRRNLKSADENLTKSGLEILRLQRKRQNLKKLLEKLE-QIKTVQQTQSRLQELLEEGDYPGALDLI 150 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 3344444434444445556666655444 6666777788888888887766 7889999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhcCCCCcccCCChhHHHHHHHHHHHHHHHHHHHH--HHHHHhHHH
Q 004367 539 EGLSRMWEVMFECHKLQFQVISVAYNNAHSKISIKSDSHRQITIHLENELSSLSSSFT--KWISAQKFY 605 (759)
Q Consensus 539 ~GL~rMWk~M~ecHq~Q~~ii~~~~~~~~~~~~~~se~hr~at~qLE~El~~W~ssF~--~wI~aQk~Y 605 (759)
...-.++..+ .+++.++.+... -.+.-.....+|+.+|..-+..|. .+-+-|-+|
T Consensus 151 ~~~~~~l~~l-----~~~~c~~~L~~~-------L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY 207 (291)
T PF10475_consen 151 EECQQLLEEL-----KGYSCVRHLSSQ-------LQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAY 207 (291)
T ss_pred HHHHHHHHhc-----ccchHHHHHhHH-------HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9988887643 344555543110 134455677788889988888886 355666665
No 12
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=62.00 E-value=82 Score=32.34 Aligned_cols=91 Identities=18% Similarity=0.278 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHhhhhcC-CCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHHHHhHH
Q 004367 468 EMIRREYDSKCRILRQLESKG-VSSHKIDKTRAVVKDLHSRIKVAIHRIDSISKRIEELRDKELQPQLEDLIEGLSRMWE 546 (759)
Q Consensus 468 E~lR~~yeKKc~~Lr~qd~rG-ad~~kIDKTRa~Vk~L~TrI~VaiqsvdsiS~~I~kLRDeEL~PQL~ELi~GL~rMWk 546 (759)
+.+...++||-..+.++...| ....+++.....|..+..|+..+-+..+.|+..|-+=.+.=-.=...+|-..|..+..
T Consensus 138 ~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~~~is~~~k~E~~rf~~~k~~d~k~~l~~~~~ 217 (236)
T PF09325_consen 138 QNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAKDEFEEISENIKKELERFEKEKVKDFKSMLEEYAE 217 (236)
T ss_pred HHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677888887777774 3468999999999999999999999999999876531111111123344455555555
Q ss_pred HHHHHHHHHHHH
Q 004367 547 VMFECHKLQFQV 558 (759)
Q Consensus 547 ~M~ecHq~Q~~i 558 (759)
.+.++|+....+
T Consensus 218 ~~i~~~~~~~~~ 229 (236)
T PF09325_consen 218 SQIEYQKKMLEA 229 (236)
T ss_pred HHHHHHHHHHHH
Confidence 566666555444
No 13
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=60.95 E-value=1.4e+02 Score=31.28 Aligned_cols=118 Identities=14% Similarity=0.218 Sum_probs=68.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHhhcCCCCcccccCCCCCCCCCCCCCCChHHHHHHHHHHhhccCChHHHHHHHHHHHHHHh
Q 004367 595 FTKWISAQKFYLQAINNWLVKCVSLPQKSSRRKRRVPAPPPLRNFGPPIYATCSVWLDLLDWLPSKELTDSIKSLASETS 674 (759)
Q Consensus 595 F~~wI~aQk~YV~aLngWL~~cl~~~~e~~~~~~~~~s~~p~r~~aPpIf~lC~~W~~aldrlp~k~v~~AIk~f~~~v~ 674 (759)
|..=...-++|-+.|..|-++.+...... + .+.+.+...|...+.. -..+...-..|+..+.
T Consensus 28 ~keRa~iE~eYak~L~kLa~k~~~~~~~~-----------~-----~~~~s~~~aw~~i~~e--~~~~a~~H~~~a~~l~ 89 (251)
T cd07653 28 VKERAAIEQEYAKKLRKLVKKYLPKKKEE-----------D-----EYSFSSVKAFRSILNE--VNDIAGQHELIAENLN 89 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCC-----------c-----cccccHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 44556778999999999999875432110 0 1233567888877653 2223333334443333
Q ss_pred HH--------hHhhhhhhcCCCChhhhhhhccccccccccchhhhhccHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 004367 675 HF--------LPRQEKNQGKSGSETAVNLLADDASEDWISGFDRFRSSLVGFLGQLNNFSENSVQMYADLKKAIQDAKIK 746 (759)
Q Consensus 675 ~l--------~~qQe~~~~k~~~~~~~~~~~~~~~~~~~~~~~~lq~~L~~~l~~L~~fs~~S~k~yeel~~~~e~~k~~ 746 (759)
.- ...+++.+.+ +...+..++..+...+..|++ +.+.|+.+.+..+.|+.+
T Consensus 90 ~~v~~~l~~~~~~~~~~rK~-----------------~~~~~~kl~~~~~~~~~~l~k----skk~Y~~~~ke~~~a~~k 148 (251)
T cd07653 90 SNVCKELKTLISELRQERKK-----------------HLSEGSKLQQKLESSIKQLEK----SKKAYEKAFKEAEKAKQK 148 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 22 2222221111 012234577777777777766 777888888888888888
Q ss_pred hhhhh
Q 004367 747 YDELV 751 (759)
Q Consensus 747 y~~~~ 751 (759)
|.+..
T Consensus 149 ~~~~~ 153 (251)
T cd07653 149 YEKAD 153 (251)
T ss_pred HHHhh
Confidence 87654
No 14
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=59.75 E-value=2.2e+02 Score=29.59 Aligned_cols=62 Identities=6% Similarity=0.077 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCCcccccCCCCCCCCCCCCCCChHHHHHHHHHHhhccCCh
Q 004367 580 ITIHLENELSSLSSSFTKWISAQKFYLQAINNWLVKCVSLPQKSSRRKRRVPAPPPLRNFGPPIYATCSVWLDLLDWLPS 659 (759)
Q Consensus 580 at~qLE~El~~W~ssF~~wI~aQk~YV~aLngWL~~cl~~~~e~~~~~~~~~s~~p~r~~aPpIf~lC~~W~~aldrlp~ 659 (759)
....|-......+.+...++++|+.|+.+|+.-=.-| ..|
T Consensus 17 ~l~kl~K~~~~~~~ag~~~~~a~~~F~~~L~~~~~~~----------------------------------------~~d 56 (200)
T cd07603 17 RLEKLLKLCNGMVDSGKTYVNANSLFVNSLNDLSDYF----------------------------------------RDD 56 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----------------------------------------CCc
Confidence 4445555566666777788888888888888432211 122
Q ss_pred HHHHHHHHHHHHHHhHHhHhhh
Q 004367 660 KELTDSIKSLASETSHFLPRQE 681 (759)
Q Consensus 660 k~v~~AIk~f~~~v~~l~~qQe 681 (759)
..+..+|+.|+..+..||.-+.
T Consensus 57 ~~i~~~l~kF~~~l~el~~~~~ 78 (200)
T cd07603 57 SLVQNCLNKFIQALQEMNNFHT 78 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3567999999999999997664
No 15
>cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 161 (Rvs161p) and Schizosaccharomyces pombe Hob3 (homolog of Bin3). S. cerevisiae Rvs161p plays a role in regulating cell polarity, actin cytoskeleton polarization, vesicle trafficking, endocytosis, bud formation, and the mating response. It forms a heterodimer with another BAR domain protein Rvs167p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. S. pombe Hob3 is important in regulating filamentous actin localization an
Probab=59.21 E-value=2.1e+02 Score=30.19 Aligned_cols=58 Identities=12% Similarity=0.066 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCCcccccCCCCCCCCCCCCCCChHHHHHHHHHHhhccCC
Q 004367 579 QITIHLENELSSLSSSFTKWISAQKFYLQAINNWLVKCVSLPQKSSRRKRRVPAPPPLRNFGPPIYATCSVWLDLLDWLP 658 (759)
Q Consensus 579 ~at~qLE~El~~W~ssF~~wI~aQk~YV~aLngWL~~cl~~~~e~~~~~~~~~s~~p~r~~aPpIf~lC~~W~~aldrlp 658 (759)
..+..|..++..|..++..+.++|....++|.+ ++.+.. .+....+|..|...++.|.
T Consensus 25 ~~~~kL~k~~k~y~da~~~l~~~q~~i~~~l~~------lY~p~~----------------~~~~~~~~~~y~~~v~~l~ 82 (224)
T cd07591 25 KASTKLQKEAKGYLDSLRALTSSQARIAETISS------FYGDAG----------------DKDGAMLSQEYKQAVEELD 82 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hcCCCC----------------CccHhHHHHHHHHHHHHHH
Confidence 478899999999999999999999999999986 233221 1112458888888877764
No 16
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=59.14 E-value=84 Score=32.94 Aligned_cols=71 Identities=13% Similarity=0.188 Sum_probs=40.7
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhcC--CCchhhHhHHHHH-------HHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHH
Q 004367 465 KASEMIRREYDSKCRILRQLESKG--VSSHKIDKTRAVV-------KDLHSRIKVAIHRIDSISKRIEELRDKELQPQLE 535 (759)
Q Consensus 465 Ka~E~lR~~yeKKc~~Lr~qd~rG--ad~~kIDKTRa~V-------k~L~TrI~VaiqsvdsiS~~I~kLRDeEL~PQL~ 535 (759)
++-++.|..|++.|..++.+-..+ .....++|.++-+ ......+.++|+....+-. +=++-||.++
T Consensus 121 ~~l~KaK~~Y~~~c~~~e~~~~~~~~~~~ke~eK~~~k~~k~~~~~~~~~~~Y~~~v~~~~~~~~-----~~~~~~~~~~ 195 (236)
T cd07651 121 KYLEKAREKYEADCSKINSYTLQSQLTWGKELEKNNAKLNKAQSSINSSRRDYQNAVKALRELNE-----IWNREWKAAL 195 (236)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
Confidence 355788999999998887665432 2223344444444 4445556666665544322 1234456666
Q ss_pred HHHHH
Q 004367 536 DLIEG 540 (759)
Q Consensus 536 ELi~G 540 (759)
+.+|-
T Consensus 196 ~~~Q~ 200 (236)
T cd07651 196 DDFQD 200 (236)
T ss_pred HHHHH
Confidence 66655
No 17
>cd07636 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion kinase. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase (GRAF), also called Rho GTPase activating protein 26 (ARHGAP26), is a GAP with activity towards RhoA and Cdc42 and is only weakly active towards Rac1. It influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase (FAK), which is a critical component of integrin signaling. GRAF contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of GRAF directly interacts with its Rho GAP domain and inhibits its activity. Autoinhibited GRAF is capable o
Probab=58.65 E-value=2.5e+02 Score=29.73 Aligned_cols=42 Identities=17% Similarity=0.327 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcCC
Q 004367 578 RQITIHLENELSSLSSSFTKWISAQKFYLQAINNWLVKCVSL 619 (759)
Q Consensus 578 r~at~qLE~El~~W~ssF~~wI~aQk~YV~aLngWL~~cl~~ 619 (759)
.+....|.........+...+.++||.|+.+|+..=.-|+-.
T Consensus 15 ~k~ik~liK~~k~~i~A~k~~~~a~~~Fa~sL~~f~~~~~gd 56 (207)
T cd07636 15 NKFIKELIKDGKSLIAALKNLSSAKRKFADSLNEFKFQCIGD 56 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 456677777888888888999999999999999998888743
No 18
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=58.14 E-value=2.4e+02 Score=29.49 Aligned_cols=25 Identities=0% Similarity=0.134 Sum_probs=20.7
Q ss_pred ChHHHHHHHHHHHHHHhHHhHhhhh
Q 004367 658 PSKELTDSIKSLASETSHFLPRQEK 682 (759)
Q Consensus 658 p~k~v~~AIk~f~~~v~~l~~qQe~ 682 (759)
.|..+.++|+.|+..+..||..+..
T Consensus 55 gd~~i~~~L~kF~~~l~ei~~~~~~ 79 (200)
T cd07637 55 KDEMISECLDKFGDSLQEMVNYHMI 79 (200)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446889999999999999987654
No 19
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=58.02 E-value=1.6e+02 Score=31.40 Aligned_cols=118 Identities=11% Similarity=0.169 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCCcccccCCCCCCCCCCCCCCChHHHHHHHHHHhhccCChHHH-----
Q 004367 588 LSSLSSSFTKWISAQKFYLQAINNWLVKCVSLPQKSSRRKRRVPAPPPLRNFGPPIYATCSVWLDLLDWLPSKEL----- 662 (759)
Q Consensus 588 l~~W~ssF~~wI~aQk~YV~aLngWL~~cl~~~~e~~~~~~~~~s~~p~r~~aPpIf~lC~~W~~aldrlp~k~v----- 662 (759)
|..-...|..=+..-++|-+.|. ++|-.+.....+...+.++ +|..|..-|+.+-.-.-
T Consensus 21 Le~i~~F~reRa~iE~EYA~~L~---~L~kq~~k~~~~~~~~~s~-------------~~~sW~~iL~ete~~A~~~~~~ 84 (237)
T cd07657 21 LETMKKYMAKRAKSDREYASTLG---SLANQGLKIEAGDDLQGSP-------------ISKSWKEIMDSTDQLSKLIKQH 84 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHhhCcCCCcccCCcCh-------------HHHHHHHHHHHHHHHHHHHHHH
Q ss_pred --------HHHHHHHHHHHhHHhHhhhhhhcCCCChhhhhhhccccccccccchhhhhccHHHHHHHHhhhhHHHHHHHH
Q 004367 663 --------TDSIKSLASETSHFLPRQEKNQGKSGSETAVNLLADDASEDWISGFDRFRSSLVGFLGQLNNFSENSVQMYA 734 (759)
Q Consensus 663 --------~~AIk~f~~~v~~l~~qQe~~~~k~~~~~~~~~~~~~~~~~~~~~~~~lq~~L~~~l~~L~~fs~~S~k~ye 734 (759)
.+.|..+......+..+......+ |+..|..+...|++ +.+.|+
T Consensus 85 ae~l~~~i~~~l~~l~~~~~~~rK~~~~~~~k------------------------l~~el~~~~~el~k----~Kk~Y~ 136 (237)
T cd07657 85 AEALESGTLDKLTLLIKDKRKAKKAYQEERQQ------------------------IDEQYKKLTDEVEK----LKSEYQ 136 (237)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHH----HHHHHH
Q ss_pred HHHHHHHHHHHHhhh
Q 004367 735 DLKKAIQDAKIKYDE 749 (759)
Q Consensus 735 el~~~~e~~k~~y~~ 749 (759)
.+.+.+|.|+.+|+.
T Consensus 137 ~~~~e~e~Ar~k~e~ 151 (237)
T cd07657 137 KLLEDYKAAKSKFEE 151 (237)
T ss_pred HHHHHHHHHHHHHHH
No 20
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=57.48 E-value=84 Score=33.40 Aligned_cols=49 Identities=20% Similarity=0.411 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHHHHHHhhhhcCCCchhhHhHHHHHHHHHHHHHHHHHHH
Q 004367 467 SEMIRREYDSKCRILRQLESKGVSSHKIDKTRAVVKDLHSRIKVAIHRI 515 (759)
Q Consensus 467 ~E~lR~~yeKKc~~Lr~qd~rGad~~kIDKTRa~Vk~L~TrI~Vaiqsv 515 (759)
-++-|..|+..|..+.++...+.....++|+++-+++....+.-+++..
T Consensus 125 l~KaK~~Y~~~c~e~e~~~~~~~s~k~~eK~~~K~~ka~~~Y~~~v~~~ 173 (261)
T cd07648 125 LQKAKEAYHARCLELERLRRENASPKEIEKAEAKLKKAQDEYKALVEKY 173 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677899999999999887666545555666555555554444444433
No 21
>cd07686 F-BAR_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fer (Fes related) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fer (Fes related) is a cytoplasmic (or nonreceptor) tyrosine kinase expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membran
Probab=56.12 E-value=2.4e+02 Score=30.26 Aligned_cols=51 Identities=29% Similarity=0.385 Sum_probs=38.4
Q ss_pred hhhHHHHHHHHHHHHHHHHhhh----HHHHHHHHHHHHHHHhhhhcCCCchhhHhHH
Q 004367 446 HASTLDRLYAWERKLYDEVKAS----EMIRREYDSKCRILRQLESKGVSSHKIDKTR 498 (759)
Q Consensus 446 hsSTLdrLyAWEKKLY~EVKa~----E~lR~~yeKKc~~Lr~qd~rGad~~kIDKTR 498 (759)
| -.|.||-.||-+|-+-|+.- -++-.+|-++...|-+++.++.... ++-+.
T Consensus 7 ~-e~l~k~q~~ei~lLE~i~~f~~eRakiEkEYA~~L~~L~kq~~kk~~~~-~~~~s 61 (234)
T cd07686 7 H-EALLKLQDWELRLLETVKKFMALRVKSDKEYASTLQNLCNQVDKESTSQ-LDYVS 61 (234)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccc-ccchh
Confidence 5 88999999999999998843 3455689999999999876665333 34443
No 22
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=55.94 E-value=29 Score=40.10 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCC
Q 004367 36 ATHVMYVQSLRNTGTALRKFVEPEGP 61 (759)
Q Consensus 36 aaH~~Y~~sL~~~g~aL~~f~~~~~~ 61 (759)
.-|+.++.+++.+=.-|+.|+..+..
T Consensus 183 ~~hveWvKa~l~l~~eL~~YVk~hht 208 (480)
T KOG2675|consen 183 PRHVEWVKAYLALFLELQAYVKEHHT 208 (480)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 35999999999999999999987744
No 23
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=55.26 E-value=3.2e+02 Score=30.05 Aligned_cols=102 Identities=18% Similarity=0.145 Sum_probs=66.9
Q ss_pred HHHHhhhhcCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 004367 479 RILRQLESKGVSSHKIDKTRAVVKDLHSRIKVAIHRIDSISKRIEELRDKELQPQLEDLIEGLSRMWEVMFECHKLQFQV 558 (759)
Q Consensus 479 ~~Lr~qd~rGad~~kIDKTRa~Vk~L~TrI~VaiqsvdsiS~~I~kLRDeEL~PQL~ELi~GL~rMWk~M~ecHq~Q~~i 558 (759)
.++.++..++-+..+|-.-+..+..++..+.|+--.+..+.++ .|=.+|.-+|..|.||=++|..+
T Consensus 152 d~I~kLk~k~P~s~kl~~LeqELvraEae~lvaEAqL~n~kR~--------------~lKEa~~~~f~Al~E~aEK~~Il 217 (271)
T PF13805_consen 152 DEIAKLKYKDPQSPKLVVLEQELVRAEAENLVAEAQLSNIKRQ--------------KLKEAYSLKFDALIERAEKQAIL 217 (271)
T ss_dssp HHHHHHHHH-TTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHHhhHHHHHHHHhhHH--------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566667778889889999999998888887666666554 56689999999999999999988
Q ss_pred HHHHh----cCCCCcccC---C-----ChhHHHHHHHHHHHHHHHHHH
Q 004367 559 ISVAY----NNAHSKISI---K-----SDSHRQITIHLENELSSLSSS 594 (759)
Q Consensus 559 i~~~~----~~~~~~~~~---~-----se~hr~at~qLE~El~~W~ss 594 (759)
..-.+ .++.....| . .+.-+++....|..|..|...
T Consensus 218 a~~gk~Ll~lldd~pv~PG~~r~~Y~g~~~t~qIl~dAe~~L~~w~~~ 265 (271)
T PF13805_consen 218 AEYGKRLLELLDDTPVVPGDTRPPYDGYEQTRQILNDAERALRSWQPD 265 (271)
T ss_dssp HHHHHHHHTTS------TTS-------HHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHhccCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhCccC
Confidence 76332 222222211 1 123346667778888888643
No 24
>cd07600 BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Golgi vesicle protein of 36 kDa and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Proteomic analysis shows that Golgi vesicle protein of 36 kDa (Gvp36) may be involved in vesicular trafficking and nutritional adaptation. A Saccharomyces cerevisiae strain deficient in Gvp36 shows defects in growth, in actin cytoskeleton polarization, in endocytosis, in vacuolar biogenesis, and in the cell cycle. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=54.14 E-value=2.9e+02 Score=29.75 Aligned_cols=135 Identities=10% Similarity=0.064 Sum_probs=80.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhhcCCCCcccccCCCCCCCCCCCCCCChHHHHHHHHHHhhccCC---hHHHHHHHHH
Q 004367 592 SSSFTKWISAQKFYLQAINNWLVKCVSLPQKSSRRKRRVPAPPPLRNFGPPIYATCSVWLDLLDWLP---SKELTDSIKS 668 (759)
Q Consensus 592 ~ssF~~wI~aQk~YV~aLngWL~~cl~~~~e~~~~~~~~~s~~p~r~~aPpIf~lC~~W~~aldrlp---~k~v~~AIk~ 668 (759)
..+|..|=+. |..-.+||..-..+..-......++.+..+++...-.|=....+=...|..+. +.....|+..
T Consensus 36 ~es~~~~~~~----~~~k~~~l~~~t~~~e~~~~l~~~~~~~~~pkTl~~aLs~~m~~~~~~l~~~~~~~~s~lg~aL~~ 111 (242)
T cd07600 36 TESISDFSKT----IGSKVSELSKATSPTEAQKVLLGTPAPAKLPKTLNHALSRAALASSLELKSLEPEDEDPLSKALGK 111 (242)
T ss_pred hHHHHHHHHh----hHHHHHHHhhcCChhhhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHHhCccCCCCCCHHHHHHHH
Confidence 3455555444 66777899877655432211110111111333333333334445555555544 5677778777
Q ss_pred HHHHHhHHhHhhhhhhcCCCChhhhhhhccccccccccchhhhhccHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 004367 669 LASETSHFLPRQEKNQGKSGSETAVNLLADDASEDWISGFDRFRSSLVGFLGQLNNFSENSVQMYADLKKAIQDAKIKYD 748 (759)
Q Consensus 669 f~~~v~~l~~qQe~~~~k~~~~~~~~~~~~~~~~~~~~~~~~lq~~L~~~l~~L~~fs~~S~k~yeel~~~~e~~k~~y~ 748 (759)
|...-..|-.-+... -+.--..++..|.+|-...++.+...|+++|..|-.|-
T Consensus 112 ~g~a~~kIa~ar~~~---------------------------D~~I~~~Fl~pL~~~L~~d~k~i~k~RKkle~~RLd~D 164 (242)
T cd07600 112 YSDAEEKIAEARLEQ---------------------------DQLIQKEFNAKLRETLNTSFQKAHKARKKVEDKRLQLD 164 (242)
T ss_pred HHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777665422110 01112678888888888899999999999999999998
Q ss_pred hhhhhhhhc
Q 004367 749 ELVNREAKS 757 (759)
Q Consensus 749 ~~~~~~~~~ 757 (759)
-++.+.+|.
T Consensus 165 ~~K~~~~ka 173 (242)
T cd07600 165 TARAELKSA 173 (242)
T ss_pred HHHHHHHhc
Confidence 888876553
No 25
>COG5085 Predicted membrane protein [Function unknown]
Probab=48.04 E-value=22 Score=37.33 Aligned_cols=39 Identities=15% Similarity=0.221 Sum_probs=26.1
Q ss_pred CChHHHHHHHHHHhhccCChHH---HHHHHHHHHHHHhHHhH
Q 004367 640 GPPIYATCSVWLDLLDWLPSKE---LTDSIKSLASETSHFLP 678 (759)
Q Consensus 640 aPpIf~lC~~W~~aldrlp~k~---v~~AIk~f~~~v~~l~~ 678 (759)
-|.|+.+|+.|.+.|++..--. ..-+-+.|+.+|..++.
T Consensus 146 vPAi~E~C~kwkqcm~~~~~~~vg~tkl~A~vFgdvIdaFi~ 187 (230)
T COG5085 146 VPAIEELCSKWKQCMKNNGYRSVGYTKLIAEVFGDVIDAFIR 187 (230)
T ss_pred CccHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHh
Confidence 5999999999999999931111 12234556666666653
No 26
>KOG4503 consensus Uncharacterized conserved membrane protein [Function unknown]
Probab=48.04 E-value=22 Score=37.33 Aligned_cols=39 Identities=15% Similarity=0.221 Sum_probs=26.1
Q ss_pred CChHHHHHHHHHHhhccCChHH---HHHHHHHHHHHHhHHhH
Q 004367 640 GPPIYATCSVWLDLLDWLPSKE---LTDSIKSLASETSHFLP 678 (759)
Q Consensus 640 aPpIf~lC~~W~~aldrlp~k~---v~~AIk~f~~~v~~l~~ 678 (759)
-|.|+.+|+.|.+.|++..--. ..-+-+.|+.+|..++.
T Consensus 146 vPAi~E~C~kwkqcm~~~~~~~vg~tkl~A~vFgdvIdaFi~ 187 (230)
T KOG4503|consen 146 VPAIEELCSKWKQCMKNNGYRSVGYTKLIAEVFGDVIDAFIR 187 (230)
T ss_pred CccHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHh
Confidence 5999999999999999931111 12234556666666653
No 27
>cd07659 BAR_PICK1 The Bin/Amphiphysin/Rvs (BAR) domain of Protein Interacting with C Kinase 1. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Protein Interacting with C Kinase 1 (PICK1), also called Protein kinase C-alpha-binding protein, is highly expressed in brain and testes. PICK1 plays a key role in the trafficking of AMPA receptors, which are critical for regulating synaptic strength and may be important in cellular processes involved in learning and memory. PICK1 is also critical in the early stages of spermiogenesis. Mice deficient in PICK1 are infertile and show characteristics of the human disease globozoospermia such as round-headed sperm, reduced sperm count, and severely impaired sperm motility. PICK1 may also be involved in the neuropathogenesis of schizophrenia. PICK1 contains an N-terminal PDZ domain and a C-terminal BAR domain. BAR domains form dimers th
Probab=47.43 E-value=1.6e+02 Score=31.22 Aligned_cols=105 Identities=21% Similarity=0.287 Sum_probs=82.7
Q ss_pred HHHHHHhhhhhccc-hhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCC---Ccc--cCCChhHHHH---HHHHHH
Q 004367 516 DSISKRIEELRDKE-LQPQLEDLIEGLSRMWEVMFECHKLQFQVISVAYNNAH---SKI--SIKSDSHRQI---TIHLEN 586 (759)
Q Consensus 516 dsiS~~I~kLRDeE-L~PQL~ELi~GL~rMWk~M~ecHq~Q~~ii~~~~~~~~---~~~--~~~se~hr~a---t~qLE~ 586 (759)
|..-++|+.|||.+ .|-+|+++...|++=...|..+|+.=-.+...+..... ... ...+|.||.. ...|..
T Consensus 2 d~l~~qie~L~~t~~~Y~~l~~~~~~l~~~f~~l~qtqk~~Gd~Fa~l~~re~~p~l~eeF~~~ae~hR~l~k~G~~ll~ 81 (215)
T cd07659 2 DGLVKKLEELEQTAELYKGLVEHTKRLLRAFYALSQTHKEFGDLFANIGVREPQPAASEAFTKFGEAHRSIEKFGIELLK 81 (215)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHhHHHHHHHHHhHHHHHH
Confidence 45678999999965 68999999999999999999999888887776532211 111 2358899854 456788
Q ss_pred HHHHHHHHHHHHHH--------HhHHHHHHHHHHHHhhcCCC
Q 004367 587 ELSSLSSSFTKWIS--------AQKFYLQAINNWLVKCVSLP 620 (759)
Q Consensus 587 El~~W~ssF~~wI~--------aQk~YV~aLngWL~~cl~~~ 620 (759)
.|.-+.+++..+++ ..|.|..|=...|.-|+.-+
T Consensus 82 ai~~~~s~l~T~l~KaipDT~lTikkY~~ar~EY~ayc~kvk 123 (215)
T cd07659 82 TLKPMLSDLGTYLNKAIPDTKLTIKKYADVKFEYLSYCLKVK 123 (215)
T ss_pred HhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889999998886 68999999999999998754
No 28
>cd07685 F-BAR_Fes The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), is a cytoplasmic (or nonreceptor) tyrosine kinase whose gene was first isolated from tumor-causing retroviruses. It is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells, and plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. Fes kinase has also been implicated as a tumor suppressor in colorectal cancer. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane def
Probab=46.16 E-value=4.2e+02 Score=28.69 Aligned_cols=125 Identities=13% Similarity=0.154 Sum_probs=71.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhhcCCCCcccccCCCCCCCCCCCCCCChHHHHHHHHHHhhccCChHHHHHHHHHHHH
Q 004367 592 SSSFTKWISAQKFYLQAINNWLVKCVSLPQKSSRRKRRVPAPPPLRNFGPPIYATCSVWLDLLDWLPSKELTDSIKSLAS 671 (759)
Q Consensus 592 ~ssF~~wI~aQk~YV~aLngWL~~cl~~~~e~~~~~~~~~s~~p~r~~aPpIf~lC~~W~~aldrlp~k~v~~AIk~f~~ 671 (759)
..+++.=+++.|+|...|..=..--..........+ ..... -|-..|...|+. .+.+..-++.|+.
T Consensus 25 k~~m~~raK~d~eya~~L~~~~~q~~k~~~~~~~~~---------~~~~s---~i~~sW~~il~Q--TE~isk~~~~~Ae 90 (237)
T cd07685 25 KKWMSQRAKSDREYSGMLHHMSAQVEKLDRSQHGAL---------SMLSS---PISQSWAVLVSQ--TETLSQVLRKHAE 90 (237)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhccccccchhhh---------cccCC---hHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 344555578999999999765443221111100000 01122 377899999886 4678888999999
Q ss_pred HHhHHhHhhhh------hhcCCCChhhhhhhccccccccccchhhhhccHHHHHHHHhhhhHH----HHHHHHHHHHHHH
Q 004367 672 ETSHFLPRQEK------NQGKSGSETAVNLLADDASEDWISGFDRFRSSLVGFLGQLNNFSEN----SVQMYADLKKAIQ 741 (759)
Q Consensus 672 ~v~~l~~qQe~------~~~k~~~~~~~~~~~~~~~~~~~~~~~~lq~~L~~~l~~L~~fs~~----S~k~yeel~~~~e 741 (759)
++..-...+-. ++.| +++......+=..|..-+.. ..+.|.++.+.++
T Consensus 91 eln~~~~~kLs~L~~~k~~~r----------------------K~~~~~~q~i~~e~~~~t~~eveK~Kk~Y~~~c~~~e 148 (237)
T cd07685 91 DLNAGPLSKLSLLIRDKQQLR----------------------KTFSEQWQLLKQEYTKTTQQDIEKLKSQYRSLAKDSA 148 (237)
T ss_pred HHHhHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99877666521 1111 11222222222222222221 2348889999999
Q ss_pred HHHHHhhhhhh
Q 004367 742 DAKIKYDELVN 752 (759)
Q Consensus 742 ~~k~~y~~~~~ 752 (759)
.||.+|+....
T Consensus 149 ~AR~K~ekas~ 159 (237)
T cd07685 149 QAKRKYQEASK 159 (237)
T ss_pred HHHHHHHhccc
Confidence 99999987543
No 29
>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to oligophrenin1 (OPHN1). Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. Some members contain a C-terminal SH3 domain. Vertebrates harbor at least three Rho GAPs in this subfamily including OPHN1, GTPase Regulator Associated with Focal adhesion kinase (GRAF), GRAF2, and an uncharacterized protein called GAP10-like. OPHN1, GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. In addition, OPHN1 is active towards Rac. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of OPHN1
Probab=45.61 E-value=3.9e+02 Score=28.21 Aligned_cols=69 Identities=19% Similarity=0.289 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCCcccccCCCCCCCCCCCCCCChHHHHHHHHHHhhccCC
Q 004367 579 QITIHLENELSSLSSSFTKWISAQKFYLQAINNWLVKCVSLPQKSSRRKRRVPAPPPLRNFGPPIYATCSVWLDLLDWLP 658 (759)
Q Consensus 579 ~at~qLE~El~~W~ssF~~wI~aQk~YV~aLngWL~~cl~~~~e~~~~~~~~~s~~p~r~~aPpIf~lC~~W~~aldrlp 658 (759)
+....|-........+...+.++||.|+.+|+..=.-|+-... ++ .
T Consensus 16 ~~ikkLiK~ck~~i~a~k~~~~a~~~F~~~L~~f~~~~~g~~~--tD--------------------------------D 61 (207)
T cd07602 16 KAIKELIKECKNLISATKNLSKAQRSFAQTLQNFKFECIGETQ--TD--------------------------------D 61 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcC--cc--------------------------------c
Confidence 4566777778888888999999999999999999888874321 10 1
Q ss_pred hHHHHHHHHHHHHHHhHHhHhhh
Q 004367 659 SKELTDSIKSLASETSHFLPRQE 681 (759)
Q Consensus 659 ~k~v~~AIk~f~~~v~~l~~qQe 681 (759)
+..+.++++.|+..|..|-..++
T Consensus 62 e~~i~~~L~kF~~~l~ei~~~r~ 84 (207)
T cd07602 62 EIEIAESLKEFGRLIETVEDERD 84 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 12355888889888888866554
No 30
>smart00872 Alpha-mann_mid Alpha mannosidase, middle domain. Members of this entry belong to the glycosyl hydrolase family 38, This domain, which is found in the central region adopts a structure consisting of three alpha helices, in an immunoglobulin/albumin-binding domain-like fold. The domain is predominantly found in the enzyme alpha-mannosidase PUBMED:12634058.
Probab=44.52 E-value=68 Score=28.01 Aligned_cols=53 Identities=17% Similarity=0.293 Sum_probs=37.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHHHHhHHHHHHHH
Q 004367 495 DKTRAVVKDLHSRIKVAIHRIDSISKRIEELRDKELQPQLEDLIEGLSRMWEVMFECH 552 (759)
Q Consensus 495 DKTRa~Vk~L~TrI~VaiqsvdsiS~~I~kLRDeEL~PQL~ELi~GL~rMWk~M~ecH 552 (759)
-.||..||.+.-++-..++.++.+..-+..+-...-||+ .-|..+||.|+.+|
T Consensus 6 ~Tsr~~~K~~~r~~E~~L~~~e~~~~~~~~~~~~~~~~~-----~~l~~~wk~ll~~q 58 (79)
T smart00872 6 YTSRPYLKRLNRRLESLLRAAEELAALAALLLLGYKYPS-----EQLEELWKALLLNQ 58 (79)
T ss_pred ecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcH-----HHHHHHHHHHHHhc
Confidence 357888888888888888888887766544422333564 34778999998764
No 31
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=43.92 E-value=47 Score=41.06 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=13.6
Q ss_pred HHHHHhhhhhccchhhHHHHHHH
Q 004367 517 SISKRIEELRDKELQPQLEDLIE 539 (759)
Q Consensus 517 siS~~I~kLRDeEL~PQL~ELi~ 539 (759)
+.+..-+.||-.|=|-.|+|||-
T Consensus 803 avt~ACEE~rkSesFs~lLeLvL 825 (1102)
T KOG1924|consen 803 AVTAACEELRKSESFSKLLELVL 825 (1102)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHH
Confidence 34444555666666666666654
No 32
>cd07659 BAR_PICK1 The Bin/Amphiphysin/Rvs (BAR) domain of Protein Interacting with C Kinase 1. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Protein Interacting with C Kinase 1 (PICK1), also called Protein kinase C-alpha-binding protein, is highly expressed in brain and testes. PICK1 plays a key role in the trafficking of AMPA receptors, which are critical for regulating synaptic strength and may be important in cellular processes involved in learning and memory. PICK1 is also critical in the early stages of spermiogenesis. Mice deficient in PICK1 are infertile and show characteristics of the human disease globozoospermia such as round-headed sperm, reduced sperm count, and severely impaired sperm motility. PICK1 may also be involved in the neuropathogenesis of schizophrenia. PICK1 contains an N-terminal PDZ domain and a C-terminal BAR domain. BAR domains form dimers th
Probab=43.48 E-value=1.5e+02 Score=31.54 Aligned_cols=65 Identities=17% Similarity=0.256 Sum_probs=49.2
Q ss_pred HhhhHHHHHHHHHHHHHHHhhhhcCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 004367 464 VKASEMIRREYDSKCRILRQLESKGVSSHKIDKTRAVVKDLHSRIKVAIHRIDSISKRIEELRDK 528 (759)
Q Consensus 464 VKa~E~lR~~yeKKc~~Lr~qd~rGad~~kIDKTRa~Vk~L~TrI~VaiqsvdsiS~~I~kLRDe 528 (759)
||.-+..|++|+--|-.|+.+|....+...+|.+-.-|+.-.-..+.-.+.-..--.+-.|||.+
T Consensus 105 ikkY~~ar~EY~ayc~kvkEmd~ee~~~~~~~e~l~rvetgnyeyrl~lRcrq~~r~kf~kLR~D 169 (215)
T cd07659 105 IKKYADVKFEYLSYCLKVKEMDDEEYSYAALDEPLYRVETGNYEYRLILRCRQEARARFAKLRQD 169 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccCcHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 66778899999999999999998887777777777767666665555555556666666666654
No 33
>PRK11546 zraP zinc resistance protein; Provisional
Probab=42.70 E-value=61 Score=32.31 Aligned_cols=51 Identities=22% Similarity=0.335 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 004367 468 EMIRREYDSKCRILRQLESKGVSSHKIDKTRAVVKDLHSRIKVAIHRIDSISKRIEELRD 527 (759)
Q Consensus 468 E~lR~~yeKKc~~Lr~qd~rGad~~kIDKTRa~Vk~L~TrI~VaiqsvdsiS~~I~kLRD 527 (759)
++|+.+|..+...||.+ |-.-|+.++.|.+.=...-+.|.+.+++|..||+
T Consensus 53 q~I~~~f~~~t~~LRqq---------L~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~ 103 (143)
T PRK11546 53 QKIHNDFYAQTSALRQQ---------LVSKRYEYNALLTANPPDSSKINAVAKEMENLRQ 103 (143)
T ss_pred HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 44555666666666643 3444555555555555555666666666666665
No 34
>PF12408 DUF3666: Ribose-5-phosphate isomerase ; InterPro: IPR022133 This domain family is found in bacteria, and is approximately 50 amino acids in length. The family is found in association with PF02502 from PFAM. There are two completely conserved residues (D and F) that may be functionally important. ; PDB: 3ONO_A 3C5Y_N 2PPW_A.
Probab=38.60 E-value=22 Score=29.21 Aligned_cols=27 Identities=26% Similarity=0.401 Sum_probs=19.4
Q ss_pred CccHHHHHHHHHHHHHHHhccCCcchh
Q 004367 326 SKDFFSSMKDIELLFIKASDSGKEVPR 352 (759)
Q Consensus 326 ~kdl~evvkeIe~~F~kAsesG~eVS~ 352 (759)
.|||++++|+||-.|+|.+=+|.....
T Consensus 4 ~k~ll~iLk~iDqdLvK~AisGe~Fqe 30 (48)
T PF12408_consen 4 YKDLLDILKAIDQDLVKTAISGERFQE 30 (48)
T ss_dssp S--HHHHHHHS-HHHHHHHT-SHHHHH
T ss_pred hhhHHHHHHHhCHHHHHHHhccHHHHH
Confidence 369999999999999999988865443
No 35
>cd07618 BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 1 (Rich1) is also called Neuron-associated developmentally-regulated protein (Nadrin) or Rho GTPase activating protein 17 (ARHGAP17). It is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. It may be a component of a sorting mechanism in the recycling of tight junction transmembrane proteins. Rich1 contains an N-terminal BAR domain followed by a Rho GAP domain and a C-terminal proline-rich domain. It interacts with the BAR domain proteins endophilin and amphiphysin through its proline-rich region. The BAR domain of Rich1 forms oligomers and can bind membranes and induce membrane tubulation.
Probab=38.10 E-value=5.5e+02 Score=27.80 Aligned_cols=16 Identities=19% Similarity=0.198 Sum_probs=9.8
Q ss_pred hhccchhhHHHHHHHH
Q 004367 525 LRDKELQPQLEDLIEG 540 (759)
Q Consensus 525 LRDeEL~PQL~ELi~G 540 (759)
.++.|.--||++||..
T Consensus 192 ~~e~e~~~~l~~lv~a 207 (246)
T cd07618 192 SKEGEYAKFFVLLLEA 207 (246)
T ss_pred HcCHHHHHHHHHHHHH
Confidence 5566666666666654
No 36
>cd07656 F-BAR_srGAP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs, all of which are expressed during embryonic and early development in the nervous system but with different localization and timing. srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=36.97 E-value=5.5e+02 Score=27.47 Aligned_cols=142 Identities=15% Similarity=0.193 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCCcccccCCCCCCCCCCCCCCChHHHHHHHHHHhhcc
Q 004367 577 HRQITIHLENELSSLSSSFTKWISAQKFYLQAINNWLVKCVSLPQKSSRRKRRVPAPPPLRNFGPPIYATCSVWLDLLDW 656 (759)
Q Consensus 577 hr~at~qLE~El~~W~ssF~~wI~aQk~YV~aLngWL~~cl~~~~e~~~~~~~~~s~~p~r~~aPpIf~lC~~W~~aldr 656 (759)
|-+.-++|-..|..| |..=...-++|-+.|-.=-.+. .+...... + .. ...|.+..|.-|..-|+.
T Consensus 13 ~te~~i~lLed~~~F---~r~RaeIE~EYs~~L~kL~k~~---~~K~~~~~----~---~~-~~~~~~s~~~~W~~lL~q 78 (241)
T cd07656 13 RTEAQVQLLADLQDY---FRRRAEIELEYSRSLEKLADRF---SSKHKNEK----S---KR-EDWSLLSPVNCWNTLLVQ 78 (241)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHh---cccccccc----c---cc-cccCcCCHHHHHHHHHHH
Confidence 444445555555554 4455566788888887543332 21111000 0 00 123455679999999886
Q ss_pred CChHHHHHHHHHHHHHHhHHhHhhh------hhhcCCCChhhhhhhccccccccccchhhhhccHHHHHHHHhhhhHHHH
Q 004367 657 LPSKELTDSIKSLASETSHFLPRQE------KNQGKSGSETAVNLLADDASEDWISGFDRFRSSLVGFLGQLNNFSENSV 730 (759)
Q Consensus 657 lp~k~v~~AIk~f~~~v~~l~~qQe------~~~~k~~~~~~~~~~~~~~~~~~~~~~~~lq~~L~~~l~~L~~fs~~S~ 730 (759)
.+.+......|+..+...+.++- ..+.++...+ ....+|..|.+++..|.+ +.
T Consensus 79 --t~~~a~~h~~lse~l~~~i~~~l~~l~~d~~~~~Kk~~e---------------~~~~lq~el~~~~~eL~k----~k 137 (241)
T cd07656 79 --TKQESRDHSTLSDIYSNNLVQRLGQMSEDLQRISKKCRE---------------IGSQLHDELLRVLNELQT----AM 137 (241)
T ss_pred --HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHH----HH
Confidence 34555556666665555444431 1121111111 113488888888888876 77
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhh
Q 004367 731 QMYADLKKAIQDAKIKYDELVNR 753 (759)
Q Consensus 731 k~yeel~~~~e~~k~~y~~~~~~ 753 (759)
+.|....+.++.|+.+|.....+
T Consensus 138 K~Y~~~~~ea~~A~~K~~~ae~~ 160 (241)
T cd07656 138 KTYHTYHAESKSAERKLKEAEKQ 160 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999888888888888766554
No 37
>smart00509 TFS2N Domain in the N-terminus of transcription elongation factor S-II (and elsewhere).
Probab=36.86 E-value=87 Score=27.52 Aligned_cols=55 Identities=16% Similarity=0.488 Sum_probs=43.8
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHH--HHHHhhhhhccchhhHHHHHHHHHHHhHHHHHH
Q 004367 494 IDKTRAVVKDLHSRIKVAIHRIDS--ISKRIEELRDKELQPQLEDLIEGLSRMWEVMFE 550 (759)
Q Consensus 494 IDKTRa~Vk~L~TrI~Vaiqsvds--iS~~I~kLRDeEL~PQL~ELi~GL~rMWk~M~e 550 (759)
.+..-..++.|.. +.++.+.+.+ |-+.+++||.-. -|++-.|...|.+-||.+.+
T Consensus 18 ~~~~l~~L~~L~~-~~~t~~~L~~T~iG~~v~~Lrkh~-~~~I~~~A~~Li~~WK~~v~ 74 (75)
T smart00509 18 VSRCLDILKKLKK-LPITVDLLEETRIGKKVNGLRKHK-NEEIRKLAKKLIKSWKKLVY 74 (75)
T ss_pred HHHHHHHHHHHhc-CCCCHHHHHHCcHHHHHHHHHcCC-cHHHHHHHHHHHHHHHHHhc
Confidence 5556667777775 6677766665 668999999875 69999999999999998763
No 38
>cd07635 BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase 2 (GRAF2), also called Rho GTPase activating protein 10 (ARHGAP10) or PS-GAP, is a GAP with activity towards Cdc42 and RhoA which regulates caspase-activated p21-activated protein kinase-2 (PAK-2p34). GRAF2 interacts with PAK-2p34, leading to its stabilization and decrease of cell death. It is highly expressed in skeletal muscle and also interacts with PKNbeta, which is a target of Rho. GRAF2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of the related prote
Probab=35.01 E-value=5.7e+02 Score=27.05 Aligned_cols=40 Identities=10% Similarity=0.202 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcC
Q 004367 579 QITIHLENELSSLSSSFTKWISAQKFYLQAINNWLVKCVS 618 (759)
Q Consensus 579 ~at~qLE~El~~W~ssF~~wI~aQk~YV~aLngWL~~cl~ 618 (759)
+....|.........+...+.++||.|+.+|+..=.-|+-
T Consensus 16 k~i~kLiK~c~~~i~a~k~~~~a~~~Fa~~L~~f~~~~~g 55 (207)
T cd07635 16 RFIKELLKDGKNLIAATKSLSAAQRKFAHSLRDFKFEFIG 55 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 3455666777788888999999999999999999888863
No 39
>cd07633 BAR_OPHN1 The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin-1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Oligophrenin-1 (OPHN1) is a GTPase activating protein (GAP) with activity towards RhoA, Rac, and Cdc42, that is expressed in developing spinal cord and in adult brain areas with high plasticity. It plays a role in regulating the actin cystoskeleton as well as morphology changes in axons and dendrites, and may also function in modulating neuronal connectivity. Mutations in the OPHN1 gene causes X-linked mental retardation associated with cerebellar hypoplasia, lateral ventricle enlargement and epilepsy. OPHN1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=34.73 E-value=5.9e+02 Score=27.09 Aligned_cols=68 Identities=12% Similarity=0.153 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCCcccccCCCCCCCCCCCCCCChHHHHHHHHHHhhccCCh
Q 004367 580 ITIHLENELSSLSSSFTKWISAQKFYLQAINNWLVKCVSLPQKSSRRKRRVPAPPPLRNFGPPIYATCSVWLDLLDWLPS 659 (759)
Q Consensus 580 at~qLE~El~~W~ssF~~wI~aQk~YV~aLngWL~~cl~~~~e~~~~~~~~~s~~p~r~~aPpIf~lC~~W~~aldrlp~ 659 (759)
..-.|..+......+...+..+||.|+..|+..=..|+-... |+ .+
T Consensus 17 ~IkkliK~~~~li~a~K~~s~A~r~Fa~~L~df~f~~igd~~--td--------------------------------de 62 (207)
T cd07633 17 FIKDVIKDGNALISAIKEYSSAVQKFSQTLQSFQFDFIGDTL--TD--------------------------------DE 62 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcc--cc--------------------------------hH
Confidence 445667777778889999999999999999998888874321 11 23
Q ss_pred HHHHHHHHHHHHHHhHHhHhhh
Q 004367 660 KELTDSIKSLASETSHFLPRQE 681 (759)
Q Consensus 660 k~v~~AIk~f~~~v~~l~~qQe 681 (759)
..+.++++.|+..+..|...+.
T Consensus 63 ~~I~~sL~~F~~~L~~ie~~r~ 84 (207)
T cd07633 63 INIAESFKEFAELLQEVEEERM 84 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3466889999998888876664
No 40
>KOG2008 consensus BTK-associated SH3-domain binding protein SAB [Signal transduction mechanisms]
Probab=34.21 E-value=1.6e+02 Score=33.06 Aligned_cols=81 Identities=27% Similarity=0.309 Sum_probs=55.6
Q ss_pred chhhHHHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHHhhhhcCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004367 445 SHASTLDRLYAWERKLYDEVK----ASEMIRREYDSKCRILRQLESKGVSSHKIDKTRAVVKDLHSRIKVAIHRIDSISK 520 (759)
Q Consensus 445 shsSTLdrLyAWEKKLY~EVK----a~E~lR~~yeKKc~~Lr~qd~rGad~~kIDKTRa~Vk~L~TrI~VaiqsvdsiS~ 520 (759)
-|++|.-++++-+-+|-+=-| |--+-|--|++|...-+.+++-- ..|+--.+.|+.----+..+++.++.||.
T Consensus 149 ~Has~a~~~l~l~~~~R~~ek~n~~AIkKSrpYfE~k~~~t~~le~qk---~tv~~Leaev~~~K~~Y~~slrnLE~ISd 225 (426)
T KOG2008|consen 149 VHASTAARYLALMGRMRQLEKKNKRAIKKSRPYFELKAKYTVQLEQQK---KTVDDLEAEVTLAKGEYKMSLRNLEMISD 225 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHhhcchHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 499999999988866655433 33455677888887766654322 24444555555555557788999999999
Q ss_pred Hhhhhhcc
Q 004367 521 RIEELRDK 528 (759)
Q Consensus 521 ~I~kLRDe 528 (759)
+|+.=|-.
T Consensus 226 ~IHeeRss 233 (426)
T KOG2008|consen 226 EIHEERSS 233 (426)
T ss_pred HHHHhhhh
Confidence 99876643
No 41
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=34.04 E-value=5.8e+02 Score=26.86 Aligned_cols=73 Identities=16% Similarity=0.205 Sum_probs=44.5
Q ss_pred chhhHHHHHHHHHHHHHHHHh------------------hhHHHHHHHHHHHHHHHhhhhcCCCchhhHhHHHHHHHHHH
Q 004367 445 SHASTLDRLYAWERKLYDEVK------------------ASEMIRREYDSKCRILRQLESKGVSSHKIDKTRAVVKDLHS 506 (759)
Q Consensus 445 shsSTLdrLyAWEKKLY~EVK------------------a~E~lR~~yeKKc~~Lr~qd~rGad~~kIDKTRa~Vk~L~T 506 (759)
++..-+++|-.|-+++.++.| .-++.|..|+++|+.+......-.... -+.+...+++|..
T Consensus 82 ~L~~~v~~l~~~~~~~~~~~K~~~~~~~k~qk~~~~~~~~l~KaKk~Y~~~C~e~e~a~~~~~~~~-~~~~~ke~eK~~~ 160 (239)
T cd07647 82 SLREEAEKLEEFREKQKEERKKTEDIMKRSQKNKKELYKKTMKAKKSYEQKCREKDKAEQAYEKSS-SGAQPKEAEKLKK 160 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCCHHHHHHHHH
Confidence 344445666667666665533 556779999999999865422111000 1245666777777
Q ss_pred HHHHHHHHHHHH
Q 004367 507 RIKVAIHRIDSI 518 (759)
Q Consensus 507 rI~Vaiqsvdsi 518 (759)
|+.-+.+.++..
T Consensus 161 K~~k~~~~~~~a 172 (239)
T cd07647 161 KAAQCKTSAEEA 172 (239)
T ss_pred HHHHHHHHHHHH
Confidence 777777666654
No 42
>PF02970 TBCA: Tubulin binding cofactor A; InterPro: IPR004226 The folding pathway of tubulins includes highly specific interactions with a series of cofactors (A, B, C, D and E) after they are released from the eukaryotic chaperonin CCT. Cofactors A and D capture and stabilise tubulin in a quasi-native conformation. Cofactor E binds to the cofactor D-tubulin complex, and interaction with cofactor C then causes the release of tubulin poypeptides in the native state. This family is the tubulin-specific chaperone A.; GO: 0051082 unfolded protein binding, 0007021 tubulin complex assembly, 0005874 microtubule; PDB: 3MXZ_A 1QSD_A 1H7C_A.
Probab=33.60 E-value=2.8e+02 Score=25.30 Aligned_cols=54 Identities=15% Similarity=0.364 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhhhhcCCCchh-------hHhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004367 471 RREYDSKCRILRQLESKGVSSHK-------IDKTRAVVKDLHSRIKVAIHRIDSISKRIEE 524 (759)
Q Consensus 471 R~~yeKKc~~Lr~qd~rGad~~k-------IDKTRa~Vk~L~TrI~VaiqsvdsiS~~I~k 524 (759)
..+.+.-..+|.++...|.|... ++.|++.|-+...||.-++..+..+-..-+.
T Consensus 20 ~kE~~~q~~rle~~k~~~~de~~iKkq~~vl~Et~~mipd~~~RL~~a~~~L~~~l~~~~~ 80 (90)
T PF02970_consen 20 EKEVEEQEARLEKMKAEGEDEYDIKKQEEVLEETKMMIPDCQQRLEKAVEDLEEFLEEEEG 80 (90)
T ss_dssp HHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHCcC
Confidence 34444445555666666777655 4788999999999999998888776443333
No 43
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=32.41 E-value=6e+02 Score=27.15 Aligned_cols=73 Identities=12% Similarity=0.206 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHhhhhcCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHHHHhHHH
Q 004367 470 IRREYDSKCRILRQLESKGVSSHKIDKTRAVVKDLHSRIKVAIHRIDSISKRIEELRDKELQPQLEDLIEGLSRMWEV 547 (759)
Q Consensus 470 lR~~yeKKc~~Lr~qd~rGad~~kIDKTRa~Vk~L~TrI~VaiqsvdsiS~~I~kLRDeEL~PQL~ELi~GL~rMWk~ 547 (759)
....+.||-..+-++...|. +.||.-++..|+.++.+...+-+--+.||..|.+ ||--==.+-+..|..|...
T Consensus 138 a~~~L~kkr~~~~Kl~~~~k-~dK~~~~~~ev~~~e~~~~~a~~~fe~Is~~~k~----El~rFe~er~~dfk~~l~~ 210 (234)
T cd07664 138 AQVTLQKKREAEAKLQYANK-PDKLQQAKDEIKEWEAKVQQGERDFEQISKTIRK----EVGRFEKERVKDFKTVIIK 210 (234)
T ss_pred HHHHHHHHHHHHHHHhhcCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 33455666666656644443 6799999999999999999999999999988753 3332223444444444433
No 44
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=32.31 E-value=5.2e+02 Score=27.69 Aligned_cols=53 Identities=17% Similarity=0.261 Sum_probs=32.1
Q ss_pred hhHHHHHHHHHHHHHHHhhhhcCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004367 466 ASEMIRREYDSKCRILRQLESKGVSSHKIDKTRAVVKDLHSRIKVAIHRIDSISKRIEEL 525 (759)
Q Consensus 466 a~E~lR~~yeKKc~~Lr~qd~rGad~~kIDKTRa~Vk~L~TrI~VaiqsvdsiS~~I~kL 525 (759)
+-++-|..|++.|+...+.-.-| .++..|+++..|..-|-+.+.....+-++.
T Consensus 124 ~l~kaK~~Y~~~cke~e~a~~~~-------~s~k~leK~~~K~~ka~~~y~~~~~ky~~~ 176 (261)
T cd07674 124 HLQKSRENYHSKCVEQERLRREG-------VPQKELEKAELKTKKAAESLRGSVEKYNRA 176 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567999999999886654333 345555555566665555555544444444
No 45
>cd07676 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Formin Binding Protein 17 (FBP17), also called FormiN Binding Protein 1 (FNBP1), is involved in dynamin-mediated endocytosis. It is recruited to clathrin-coated pits late in the endocytosis process and may play a role in the invagination and scission steps. FBP17 binds in vivo to tankyrase, a protein involved in telomere maintenance and mitogen activated protein kinase (MAPK) signaling. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=32.03 E-value=6.7e+02 Score=27.03 Aligned_cols=120 Identities=10% Similarity=0.146 Sum_probs=68.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHhhcCCCCcccccCCCCCCCCCCCCCCChHHHHHHHHHHhhccCChHHHHHHHHHHHHHHh
Q 004367 595 FTKWISAQKFYLQAINNWLVKCVSLPQKSSRRKRRVPAPPPLRNFGPPIYATCSVWLDLLDWLPSKELTDSIKSLASETS 674 (759)
Q Consensus 595 F~~wI~aQk~YV~aLngWL~~cl~~~~e~~~~~~~~~s~~p~r~~aPpIf~lC~~W~~aldrlp~k~v~~AIk~f~~~v~ 674 (759)
|..=..--++|-..|..|-++...-..... ...|.|.+|..|...|..+- .+.+.=..|+..+.
T Consensus 28 ~kERa~IEkeYakkL~~L~kKy~~kk~~~~--------------~~~~~~t~~~aw~~~l~e~~--~~A~~H~~~~~~L~ 91 (253)
T cd07676 28 VKERTEIELSYAKQLRNLSKKYQPKKNSKE--------------EEEYKYTSCRAFLMTLNEMN--DYAGQHEVISENLA 91 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccc--------------cccccchHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 344445679999999999999864332100 01245677999997665432 22222333333332
Q ss_pred H--------HhHhhhhhhcCCCChhhhhhhccccccccccchhhhhccHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 004367 675 H--------FLPRQEKNQGKSGSETAVNLLADDASEDWISGFDRFRSSLVGFLGQLNNFSENSVQMYADLKKAIQDAKIK 746 (759)
Q Consensus 675 ~--------l~~qQe~~~~k~~~~~~~~~~~~~~~~~~~~~~~~lq~~L~~~l~~L~~fs~~S~k~yeel~~~~e~~k~~ 746 (759)
. +..+.+..|.. +......+|.-+.+.+..|++ +-+.|+...+..|.|+..
T Consensus 92 ~~v~~~l~~~~~~~k~~rK~-----------------~~~~~~k~qk~~~~~~~~lek----aKk~Y~~acke~E~A~~~ 150 (253)
T cd07676 92 SQIIVELTRYVQELKQERKS-----------------HFHDGRKAQQHIETCWKQLES----SKRRFERDCKEADRAQQY 150 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 2 22211111110 001123467777777777776 577888888888888888
Q ss_pred hhhhh
Q 004367 747 YDELV 751 (759)
Q Consensus 747 y~~~~ 751 (759)
|.+..
T Consensus 151 ~~ka~ 155 (253)
T cd07676 151 FEKMD 155 (253)
T ss_pred HHhcc
Confidence 86654
No 46
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=32.01 E-value=4.2e+02 Score=27.49 Aligned_cols=74 Identities=16% Similarity=0.240 Sum_probs=53.7
Q ss_pred hHHHHHHHHHHHHHHHhhhhcCC-CchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------hhccchhhHHHHHH
Q 004367 467 SEMIRREYDSKCRILRQLESKGV-SSHKIDKTRAVVKDLHSRIKVAIHRIDSISKRIEE-------LRDKELQPQLEDLI 538 (759)
Q Consensus 467 ~E~lR~~yeKKc~~Lr~qd~rGa-d~~kIDKTRa~Vk~L~TrI~VaiqsvdsiS~~I~k-------LRDeEL~PQL~ELi 538 (759)
-+.+....+||-.+|-++...|. -..||+.....|+.++.+...+-+..+.||..|.+ -|=.++--.|..++
T Consensus 117 ~~~~~~~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~~~~~a~~~~e~is~~~k~El~rF~~~r~~dfk~~l~~~~ 196 (216)
T cd07627 117 WQSAESELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAERRASELKKEFEEVSELIKSELERFERERVEDFRNSVEIYL 196 (216)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677888877777765442 36799999999999999999999999999988753 33344444444444
Q ss_pred HH
Q 004367 539 EG 540 (759)
Q Consensus 539 ~G 540 (759)
+|
T Consensus 197 e~ 198 (216)
T cd07627 197 ES 198 (216)
T ss_pred HH
Confidence 44
No 47
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=31.83 E-value=53 Score=30.28 Aligned_cols=36 Identities=22% Similarity=0.287 Sum_probs=27.8
Q ss_pred cHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 004367 714 SLVGFLGQLNNFSENSVQMYADLKKAIQDAKIKYDEL 750 (759)
Q Consensus 714 ~L~~~l~~L~~fs~~S~k~yeel~~~~e~~k~~y~~~ 750 (759)
+|-++.-.+-.|-. .-++|+||+++|++||..+++-
T Consensus 52 sl~~lgy~v~tFnD-cpeA~~eL~~eI~eAK~dLr~k 87 (91)
T PF08285_consen 52 SLFTLGYGVATFND-CPEAAKELQKEIKEAKADLRKK 87 (91)
T ss_pred HHHHHHHhhhccCC-CHHHHHHHHHHHHHHHHHHHHc
Confidence 45666666777744 5569999999999999988763
No 48
>cd07634 BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domain of Rho GTPase activating protein 10-like. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This group is composed of uncharacterized proteins called Rho GTPase activating protein (GAP) 10-like. GAP10-like may be a GAP with activity towards RhoA and Cdc42. Similar to GRAF and GRAF2, it contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of the related proteins GRAF and OPHN1, directly interact with their Rho GAP domains and inhibit theiractivity. The autoinhibited proteins are capable of binding membranes and tubulating liposomes, showing that the membrane-tubulation and GAP-inhibitory functions of the BAR domain
Probab=31.26 E-value=6.6e+02 Score=26.63 Aligned_cols=40 Identities=15% Similarity=0.277 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcC
Q 004367 579 QITIHLENELSSLSSSFTKWISAQKFYLQAINNWLVKCVS 618 (759)
Q Consensus 579 ~at~qLE~El~~W~ssF~~wI~aQk~YV~aLngWL~~cl~ 618 (759)
+..-.|.........+...+.++||.|+.+|+..=.-|+-
T Consensus 16 ~~ik~liK~c~~li~A~k~~~~a~~~Fa~sL~~f~~~~ig 55 (207)
T cd07634 16 KFIKELIKDGSLLIGALRNLSMAVQKFSQSLQDFQFECIG 55 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 4566777788888899999999999999999999888875
No 49
>PF10368 YkyA: Putative cell-wall binding lipoprotein; InterPro: IPR019454 The YkyA family of proteins contain a lipoprotein signal and a hydrolase domain. They are similar to cell wall binding proteins and might also be recognisable by a host immune defence system. It is thus likely that they function in pathways important for pathogenicity []. ; PDB: 2AP3_A.
Probab=30.13 E-value=3.4e+02 Score=28.35 Aligned_cols=104 Identities=16% Similarity=0.262 Sum_probs=61.3
Q ss_pred chhhHHHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHHhhhhcCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004367 445 SHASTLDRLYAWERKLYDEVK----ASEMIRREYDSKCRILRQLESKGVSSHKIDKTRAVVKDLHSRIKVAIHRIDSISK 520 (759)
Q Consensus 445 shsSTLdrLyAWEKKLY~EVK----a~E~lR~~yeKKc~~Lr~qd~rGad~~kIDKTRa~Vk~L~TrI~VaiqsvdsiS~ 520 (759)
+-..+|.+|=.=+.+||+.+- ..-..+...-.+. ...+++=+..++....-|.-+-.-+..+.+
T Consensus 36 ~~~k~L~~lE~~~q~lY~~ii~~~~~d~~~v~~~~~~a------------~~nv~~R~k~l~~Ek~ai~~a~~e~~~~~~ 103 (204)
T PF10368_consen 36 EQQKKLNELEKKEQELYEQIIQLGKDDNDEVKKLSDEA------------LKNVDEREKELKKEKEAIEKAKEEFKKAKK 103 (204)
T ss_dssp HHHHHHHHHHHHHHTTTTGG---G-SSHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777778888881 1111111111111 235566667777777778888889999999
Q ss_pred HhhhhhccchhhHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 004367 521 RIEELRDKELQPQLEDLIEGLSRMWEVMFECHKLQFQVIS 560 (759)
Q Consensus 521 ~I~kLRDeEL~PQL~ELi~GL~rMWk~M~ecHq~Q~~ii~ 560 (759)
.|.+|.|+.+.-|+.+|+.-|-...+..-.-|..=..+|.
T Consensus 104 ~i~ki~d~~~k~qa~~l~~~~~~ry~~~~~l~~~Y~~~l~ 143 (204)
T PF10368_consen 104 YIDKIEDEKLKKQAKELNEAMKKRYKSYDKLYKAYKKALE 143 (204)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888776665555544444443
No 50
>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=29.82 E-value=6.6e+02 Score=27.32 Aligned_cols=38 Identities=18% Similarity=0.218 Sum_probs=29.4
Q ss_pred hhhccHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 004367 710 RFRSSLVGFLGQLNNFSENSVQMYADLKKAIQDAKIKYDELV 751 (759)
Q Consensus 710 ~lq~~L~~~l~~L~~fs~~S~k~yeel~~~~e~~k~~y~~~~ 751 (759)
.+|..|...+..|++ |-+.|+...+..|.|+.+|.+..
T Consensus 117 klqk~l~~~~~~lek----sKk~Y~~acke~E~A~~k~~ka~ 154 (252)
T cd07675 117 KAQQYLDMCWKQMDN----SKKKFERECREAEKAQQSYERLD 154 (252)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcc
Confidence 467777777777766 77789988888888888887743
No 51
>cd07678 F-BAR_FCHSD1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains 1 (FCHSD1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH and double SH3 domains 1 (FCHSD1) contains an N-terminal F-BAR domain and two SH3 domains at the C-terminus. It has been characterized only in silico, and its biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=27.55 E-value=1.2e+02 Score=32.95 Aligned_cols=37 Identities=22% Similarity=0.364 Sum_probs=32.3
Q ss_pred hhhhccHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 004367 709 DRFRSSLVGFLGQLNNFSENSVQMYADLKKAIQDAKIKYDE 749 (759)
Q Consensus 709 ~~lq~~L~~~l~~L~~fs~~S~k~yeel~~~~e~~k~~y~~ 749 (759)
..||..|.+++..|.+ +.|.|+.+.+.++.|+.+|.-
T Consensus 119 ~~lQ~eL~~~~keL~k----sKK~Y~~~~~ea~~A~~K~~e 155 (263)
T cd07678 119 QKAQAELLETVKELSK----SKKLYGQLERVSEVAKEKAAD 155 (263)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 3589999999988887 788999999999999999973
No 52
>PF09241 Herp-Cyclin: Herpesviridae viral cyclin; InterPro: IPR015322 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. This entry represents a domain found in a family of viral cyclins that specifically activate CDK6 of host cells to a very high degree []. This domain adopts a helical structure consisting of five alpha-helices, with one helix surrounded by the others.; PDB: 1XO2_A 1JOW_A 2F2C_A 2EUF_A 1BU2_A.
Probab=27.52 E-value=33 Score=31.28 Aligned_cols=14 Identities=21% Similarity=0.228 Sum_probs=11.1
Q ss_pred ccchhhHHHHHHHH
Q 004367 527 DKELQPQLEDLIEG 540 (759)
Q Consensus 527 DeEL~PQL~ELi~G 540 (759)
-|||||||.|+..-
T Consensus 18 pe~~wpql~e~~s~ 31 (106)
T PF09241_consen 18 PEDFWPQLFEATSI 31 (106)
T ss_dssp -GGGHHHHHHHHHH
T ss_pred cHHHhHHHHHHHHH
Confidence 48999999998653
No 53
>PF08655 DASH_Ask1: DASH complex subunit Ask1; InterPro: IPR013964 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=26.89 E-value=1.7e+02 Score=25.66 Aligned_cols=49 Identities=24% Similarity=0.482 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHH------HHhHHHHHH
Q 004367 502 KDLHSRIKVAIHRIDSISKRIEELRDKELQPQLEDLIEGL------SRMWEVMFE 550 (759)
Q Consensus 502 k~L~TrI~VaiqsvdsiS~~I~kLRDeEL~PQL~ELi~GL------~rMWk~M~e 550 (759)
+.|.=.|....|-||+==++.+++--..+.|.+-+--..- .++|+.|+|
T Consensus 2 E~ldQ~iTl~LQeID~N~s~~~~iit~~IlP~v~rY~~~s~~i~~~~~fwk~fFe 56 (66)
T PF08655_consen 2 EQLDQEITLLLQEIDSNFSRCHRIITDKILPAVERYGESSEKIWDSAKFWKQFFE 56 (66)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4677788999999999888888888889999987654443 377888876
No 54
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=26.59 E-value=3.9e+02 Score=25.87 Aligned_cols=85 Identities=20% Similarity=0.282 Sum_probs=59.6
Q ss_pred cchhhHHHHHHHHHHHHHHHHhhhHHHHHHH-HHHHHHHHhhhhcCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004367 444 SSHASTLDRLYAWERKLYDEVKASEMIRREY-DSKCRILRQLESKGVSSHKIDKTRAVVKDLHSRIKVAIHRIDSISKRI 522 (759)
Q Consensus 444 gshsSTLdrLyAWEKKLY~EVKa~E~lR~~y-eKKc~~Lr~qd~rGad~~kIDKTRa~Vk~L~TrI~VaiqsvdsiS~~I 522 (759)
..++++|.||=.-=--|=+|+..-+.-|-.- +.=++.++.-+...+....+++-+..+++|..|+..+.+-+---+-++
T Consensus 19 e~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~v 98 (120)
T PF12325_consen 19 ERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEV 98 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 3466666665544444555565555555533 333344555555556678889999999999999999999999999999
Q ss_pred hhhhcc
Q 004367 523 EELRDK 528 (759)
Q Consensus 523 ~kLRDe 528 (759)
+.||.+
T Consensus 99 eEL~~D 104 (120)
T PF12325_consen 99 EELRAD 104 (120)
T ss_pred HHHHHH
Confidence 988875
No 55
>PF06404 PSK: Phytosulfokine precursor protein (PSK); InterPro: IPR009438 This family consists of several plant specific phytosulfokine precursor proteins. Phytosulfokines, are active as either a pentapeptide or a C-terminally truncated tetrapeptide. These compounds were first isolated because of their ability to stimulate cell division in somatic embryo cultures of Asparagus officinalis [].; GO: 0008083 growth factor activity, 0008283 cell proliferation, 0005576 extracellular region
Probab=25.23 E-value=35 Score=30.83 Aligned_cols=12 Identities=42% Similarity=0.645 Sum_probs=9.9
Q ss_pred hhHHHHHHHHHHH
Q 004367 30 GRCSLAATHVMYV 42 (759)
Q Consensus 30 ~R~~laaaH~~Y~ 42 (759)
.|..|| ||.+||
T Consensus 63 ~RRtL~-AHlDYI 74 (81)
T PF06404_consen 63 MRRTLA-AHLDYI 74 (81)
T ss_pred HHHHHH-HHhhhe
Confidence 466788 999998
No 56
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=24.79 E-value=1.3e+03 Score=27.92 Aligned_cols=142 Identities=13% Similarity=0.219 Sum_probs=90.1
Q ss_pred hhhHHHHHH-----HHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhcCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004367 446 HASTLDRLY-----AWERKLYDEVKASEMIRREYDSKCRILRQLESKGVSSHKIDKTRAVVKDLHSRIKVAIHRIDSISK 520 (759)
Q Consensus 446 hsSTLdrLy-----AWEKKLY~EVKa~E~lR~~yeKKc~~Lr~qd~rGad~~kIDKTRa~Vk~L~TrI~VaiqsvdsiS~ 520 (759)
-.-++++.| .| ++.|+++-..+.+ .+|.+++..|+..+- .++..|-+....++.|...|.-..+.|.+...
T Consensus 165 ~~~~~~~~~k~~~~~w-~~~~~~Lp~~~~~-~~yk~~v~~i~~~~i--k~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~ 240 (555)
T TIGR03545 165 TAEEIEKSLKAMQQKW-KKRKKDLPNKQDL-EEYKKRLEAIKKKDI--KNPLELQKIKEEFDKLKKEGKADKQKIKSAKN 240 (555)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHhcCCchhH-HHHHHHHHHHHhccC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455544 24 3456677654444 479999999988432 45678889999999999999999999999888
Q ss_pred HhhhhhccchhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCCcccCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004367 521 RIEELRDKELQPQLEDLIEGLSRMWEVMFECHKLQFQVISVAYNNAHSKISIKSDSHRQITIHLENELSSLSSSFTKWIS 600 (759)
Q Consensus 521 ~I~kLRDeEL~PQL~ELi~GL~rMWk~M~ecHq~Q~~ii~~~~~~~~~~~~~~se~hr~at~qLE~El~~W~ssF~~wI~ 600 (759)
.++..++ .+..|+-+|-+. .|.-+= .+........++.+--+..-+-.++..|...|-.|..
T Consensus 241 ~l~~~~~-~~~~~~~~lk~a-------------p~~D~~----~L~~~~~~~~~~~~~~~~~L~g~~i~~~~~~~~~~y~ 302 (555)
T TIGR03545 241 DLQNDKK-QLKADLAELKKA-------------PQNDLK----RLENKYAIKSGDLKNFAVDLFGPEIRKYLQKFLKYYD 302 (555)
T ss_pred HHHHhHH-HHHHHHHHHHhc-------------cHhHHH----HHHHHhCCCcccHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 8887653 222222222211 111111 1111112234556777888889999999999988876
Q ss_pred HhHHHHHHH
Q 004367 601 AQKFYLQAI 609 (759)
Q Consensus 601 aQk~YV~aL 609 (759)
-=.-||...
T Consensus 303 ~~~p~i~~~ 311 (555)
T TIGR03545 303 QAEPLLNKS 311 (555)
T ss_pred HHhHhhccc
Confidence 655555443
No 57
>PF09321 DUF1978: Domain of unknown function (DUF1978); InterPro: IPR015400 This domain is found in various hypothetical proteins produced by the bacterium Chlamydia pneumoniae. Their exact function has not, as yet, been identified. This entry includes the IncA proteins
Probab=24.74 E-value=9.3e+02 Score=26.21 Aligned_cols=76 Identities=17% Similarity=0.258 Sum_probs=51.7
Q ss_pred hHHHHHHHHHHHhHHHH--HHHHHHHHHH--HHHHhcCCCCcccCCChhHHHHHH-----HHHHHHHHHHHHHHHHHHHh
Q 004367 532 PQLEDLIEGLSRMWEVM--FECHKLQFQV--ISVAYNNAHSKISIKSDSHRQITI-----HLENELSSLSSSFTKWISAQ 602 (759)
Q Consensus 532 PQL~ELi~GL~rMWk~M--~ecHq~Q~~i--i~~~~~~~~~~~~~~se~hr~at~-----qLE~El~~W~ssF~~wI~aQ 602 (759)
-.|-+..+-+.+-|+-. .|||++|-++ ++.+|..- ....-+.-++.|. .||..+.+--......+..|
T Consensus 94 k~l~d~~~~~~~~~~~~~~qE~~ra~eRl~~LqalYp~v---~v~~~e~~~q~t~~~~~~dLe~~~e~IE~~y~~cv~eQ 170 (241)
T PF09321_consen 94 KKLKDAEKRRLRCLQDFYDQEIERAQERLRELQALYPEV---SVSEVETERQETVSSNASDLEKAYENIEEEYQQCVREQ 170 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC---chhHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555554 4889988776 45444332 2233566777777 89988888888888899999
Q ss_pred HHHHHHHH
Q 004367 603 KFYLQAIN 610 (759)
Q Consensus 603 k~YV~aLn 610 (759)
..|++-+-
T Consensus 171 e~YWke~e 178 (241)
T PF09321_consen 171 EDYWKEEE 178 (241)
T ss_pred HHHHHHHH
Confidence 99998763
No 58
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=24.68 E-value=8.3e+02 Score=25.66 Aligned_cols=34 Identities=9% Similarity=0.058 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 004367 580 ITIHLENELSSLSSSFTKWISAQKFYLQAINNWL 613 (759)
Q Consensus 580 at~qLE~El~~W~ssF~~wI~aQk~YV~aLngWL 613 (759)
....|-......+.+...++++|+.|+.+|+.-=
T Consensus 17 ~l~kl~K~~k~~~~agk~~~~a~~~F~~~L~~f~ 50 (200)
T cd07639 17 RLEKLVKLGSGMLEGGRHYCAASRAFVDGLCDLA 50 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455556666677777788888888888888763
No 59
>cd07610 FCH_F-BAR The Extended FES-CIP4 Homology (FCH) or F-BAR (FCH and Bin/Amphiphysin/Rvs) domain, a dimerization module that binds and bends membranes. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. F-BAR domain containing proteins, also known as Pombe Cdc15 homology (PCH) family proteins, include Fes and Fer tyrosine kinases, PACSINs/Syndapins, FCHO, PSTPIP, CIP4-like proteins and srGAPs. Many members also contain an SH3 domain and play roles in endocytosis. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. These tubules have diameters larger than those observed with N-BARs. The F-BAR domains of some members such as NOSTRIN and Rgd1 are important for the subcellular localization of the protein.
Probab=24.39 E-value=6.9e+02 Score=24.63 Aligned_cols=90 Identities=12% Similarity=0.096 Sum_probs=53.3
Q ss_pred HHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHhhhhcCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 004367 450 LDRLYAWERK-LYDEVKASEMIRREYDSKCRILRQLESKGVSSHKIDKTRAVVKDLHSRIKVAIHRIDSISKRIEELRDK 528 (759)
Q Consensus 450 LdrLyAWEKK-LY~EVKa~E~lR~~yeKKc~~Lr~qd~rGad~~kIDKTRa~Vk~L~TrI~VaiqsvdsiS~~I~kLRDe 528 (759)
+..+..|.|+ ...++...+++...|..-++.+.+ + .-+.-+..|..+...-.--....-.....-+.+. +
T Consensus 88 ~~~~~~~~~~~rk~~~~~~~~~~k~~~~~~~~~~k-k-------~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~q~~~-e 158 (191)
T cd07610 88 LEKVKEDKEQARKKELAEGEKLKKKLQELWAKLAK-K-------ADEEYREQVEKLNPAQSEYEEEKLNKIQAEQERE-E 158 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-------hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-H
Confidence 3555677776 778888899999999999988888 2 2234445555555544444444444444444443 4
Q ss_pred chhhHHHHHHHHHHHhHHHH
Q 004367 529 ELQPQLEDLIEGLSRMWEVM 548 (759)
Q Consensus 529 EL~PQL~ELi~GL~rMWk~M 548 (759)
++.-.|-+++.++...|+.+
T Consensus 159 ~r~~~~~~~l~~~~~~~~~~ 178 (191)
T cd07610 159 ERLEILKDNLKNYINAIKEI 178 (191)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 44444555555544444443
No 60
>PF06989 BAALC_N: BAALC N-terminus; InterPro: IPR009728 This entry represents the mammalian BAALC proteins. BAALC (brain and acute leukaemia, cytoplasmic) is highly conserved among mammals, but is absent from lower organisms. Two isoforms are specifically expressed in neuroectoderm-derived tissues, but not in tumours or cancer cell lines of non-neural tissue origin. It has been shown that blasts from a subset of patients with acute leukaemia greatly overexpress eight different BAALC transcripts, resulting in five protein isoforms. Among patients with acute myeloid leukaemia, those overexpressing BAALC show distinctly poor prognosis, pointing to a key role of the BAALC products in leukaemia. It has been suggested that BAALC is a gene implicated in both neuroectodermal and hematopoietic cell functions [].; GO: 0005737 cytoplasm
Probab=24.39 E-value=33 Score=28.21 Aligned_cols=11 Identities=27% Similarity=0.435 Sum_probs=8.6
Q ss_pred CCCCcCCccch
Q 004367 1 MGVSSSKLEED 11 (759)
Q Consensus 1 MGc~~Sk~d~~ 11 (759)
|||++|+.|..
T Consensus 1 mgcggsradai 11 (53)
T PF06989_consen 1 MGCGGSRADAI 11 (53)
T ss_pred CCCCccccccc
Confidence 89999887643
No 61
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=23.65 E-value=6.6e+02 Score=26.90 Aligned_cols=18 Identities=17% Similarity=0.516 Sum_probs=14.3
Q ss_pred hhHHHHHHHHHHHHHHHh
Q 004367 466 ASEMIRREYDSKCRILRQ 483 (759)
Q Consensus 466 a~E~lR~~yeKKc~~Lr~ 483 (759)
.-++-|..|++.|+.+..
T Consensus 134 ~l~kaKk~Y~~~cke~e~ 151 (258)
T cd07655 134 KVEKAKKAYHAACKAEKS 151 (258)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 356779999999988755
No 62
>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR
Probab=23.22 E-value=5.1e+02 Score=27.71 Aligned_cols=88 Identities=10% Similarity=0.200 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHh---------------hhHHHHHHHHHHHHHHHhhhhcCCCchhhHhHHHHHHHHHHHHHHHHHH
Q 004367 450 LDRLYAWERKLYDEVK---------------ASEMIRREYDSKCRILRQLESKGVSSHKIDKTRAVVKDLHSRIKVAIHR 514 (759)
Q Consensus 450 LdrLyAWEKKLY~EVK---------------a~E~lR~~yeKKc~~Lr~qd~rGad~~kIDKTRa~Vk~L~TrI~Vaiqs 514 (759)
|.+...|-|+-=+.+. .=++-|..|+..|+.++.-.. +.....-..|...++++..|+.-+.+.
T Consensus 90 l~~f~~~qke~rK~~e~~~eK~qk~~~~~~k~l~ksKk~Ye~~Cke~~~a~q-~~~k~~~~~t~keleK~~~K~~k~~~~ 168 (242)
T cd07671 90 LEEFRERQKEQRKKYEAVMERVQKSKVSLYKKTMESKKTYEQRCREADEAEQ-TFERSSSTGNPKQSEKSQNKAKQCRDA 168 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCCHHHHHHHHHHHHHHHHH
Confidence 4666677766333222 336678999999998876321 100001124667788888888888888
Q ss_pred HHHHHHHhhhhhccchhhHHHHHHHHHHHhHHH
Q 004367 515 IDSISKRIEELRDKELQPQLEDLIEGLSRMWEV 547 (759)
Q Consensus 515 vdsiS~~I~kLRDeEL~PQL~ELi~GL~rMWk~ 547 (759)
++.. .+-|-+.++-+.....-|..
T Consensus 169 ~~~a---------~~~Y~~~v~~l~~~~~~w~~ 192 (242)
T cd07671 169 ATEA---------ERVYKQNIEQLDKARTEWET 192 (242)
T ss_pred HHHH---------HHHHHHHHHHHHHHHHHHHH
Confidence 8765 46677788877888888853
No 63
>cd00183 TFIIS_I N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
Probab=22.86 E-value=2e+02 Score=25.16 Aligned_cols=56 Identities=14% Similarity=0.427 Sum_probs=42.6
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHH--HHHHhhhhhccchhhHHHHHHHHHHHhHHHHH
Q 004367 492 HKIDKTRAVVKDLHSRIKVAIHRIDS--ISKRIEELRDKELQPQLEDLIEGLSRMWEVMF 549 (759)
Q Consensus 492 ~kIDKTRa~Vk~L~TrI~Vaiqsvds--iS~~I~kLRDeEL~PQL~ELi~GL~rMWk~M~ 549 (759)
...+..-..++.|.. +.+..+.+.+ |-+.+++||.-.= |++-.|..+|.+=||.+.
T Consensus 18 ~~~~~~~~~L~~L~~-~~it~~~L~~T~iG~~V~~Lrkh~~-~~i~~~A~~Lv~~Wk~~v 75 (76)
T cd00183 18 EEVSRLLDLLRLLKK-LPLTVEILKETRIGKKVNSLRKHSN-EKIRKLAKALIKSWKKLV 75 (76)
T ss_pred CCHHHHHHHHHHHhc-CCCCHHHHHHCCHHHHHHHHHcCCc-HHHHHHHHHHHHHHHHhc
Confidence 345566667777776 5566666655 6689999997654 999999999999999864
No 64
>cd07676 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Formin Binding Protein 17 (FBP17), also called FormiN Binding Protein 1 (FNBP1), is involved in dynamin-mediated endocytosis. It is recruited to clathrin-coated pits late in the endocytosis process and may play a role in the invagination and scission steps. FBP17 binds in vivo to tankyrase, a protein involved in telomere maintenance and mitogen activated protein kinase (MAPK) signaling. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=21.67 E-value=7.1e+02 Score=26.84 Aligned_cols=96 Identities=10% Similarity=0.189 Sum_probs=60.0
Q ss_pred hhhHHHHHHHHHHHHHHHHh-----------hhHHHHHHHHHHHHHHHhhhhcC--CCchhhHhHHHHHHHHHHHHHHHH
Q 004367 446 HASTLDRLYAWERKLYDEVK-----------ASEMIRREYDSKCRILRQLESKG--VSSHKIDKTRAVVKDLHSRIKVAI 512 (759)
Q Consensus 446 hsSTLdrLyAWEKKLY~EVK-----------a~E~lR~~yeKKc~~Lr~qd~rG--ad~~kIDKTRa~Vk~L~TrI~Vai 512 (759)
+..-+.++=.|-|.+|.+.. .-|+.+..|++=|+.-...-.+- ++. .++-|++.++++..+.....
T Consensus 98 l~~~~~~~k~~rK~~~~~~~k~qk~~~~~~~~lekaKk~Y~~acke~E~A~~~~~ka~~-d~~~sk~~~eK~k~~~~~~~ 176 (253)
T cd07676 98 LTRYVQELKQERKSHFHDGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYFEKMDA-DINVTKADVEKARQQAQIRH 176 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cccCCHHHHHHHHHHHHHHH
Confidence 44455567778888877653 45678888888776553332211 211 35567888888888888888
Q ss_pred HHHHHHHHH----hh---hh---hccchhhHHHHHHHHHH
Q 004367 513 HRIDSISKR----IE---EL---RDKELQPQLEDLIEGLS 542 (759)
Q Consensus 513 qsvdsiS~~----I~---kL---RDeEL~PQL~ELi~GL~ 542 (759)
|.++..-.. |+ ++ .=.|.-|++++.+|-|-
T Consensus 177 ~~~e~aKn~Y~~~l~~~N~~q~~~Y~e~mp~vfd~lQ~le 216 (253)
T cd07676 177 QMAEDSKAEYSSYLQKFNKEQHEHYYTHIPNIFQKIQEME 216 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 777754332 22 22 22456788888877754
No 65
>smart00146 PI3Kc Phosphoinositide 3-kinase, catalytic domain. Phosphoinositide 3-kinase isoforms participate in a variety of processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, and apoptosis. These homologues may be either lipid kinases and/or protein kinases: the former phosphorylate the 3-position in the inositol ring of inositol phospholipids. The ataxia telangiectesia-mutated gene produced, the targets of rapamycin (TOR) and the DNA-dependent kinase have not been found to possess lipid kinase activity. Some of this family possess PI-4 kinase activities.
Probab=21.54 E-value=85 Score=32.18 Aligned_cols=84 Identities=18% Similarity=0.207 Sum_probs=53.1
Q ss_pred hhhhccchhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhc---CC----CCcccCCChhHHHHHHHHHHHHHHHHHH-
Q 004367 523 EELRDKELQPQLEDLIEGLSRMWEVMFECHKLQFQVISVAYN---NA----HSKISIKSDSHRQITIHLENELSSLSSS- 594 (759)
Q Consensus 523 ~kLRDeEL~PQL~ELi~GL~rMWk~M~ecHq~Q~~ii~~~~~---~~----~~~~~~~se~hr~at~qLE~El~~W~ss- 594 (759)
..||-+|+.-||..|+.. ||+.--||++....+.. +. .. -+...+.+.+..+. |.+|...
T Consensus 8 dDlR~D~~~~ql~~~~n~---il~~~~e~~~~~l~~~~--y~vip~~~~~GlIE~v~~~~sl~~i-------l~~~~~~~ 75 (202)
T smart00146 8 DDLRQDERVLQLLRLMNK---ILQKDGETRRRDLHLRP--YKVIPTGPKSGLIEVVPNSTTLHQI-------LYDWFKKK 75 (202)
T ss_pred CcccHHHHHHHHHHHHHH---HHHhCcccccCceEeee--eEEEEcCCCcceEEEcCCchhHHHH-------HHHHHHHH
Confidence 568999999998888765 67777777765544332 11 11 01111223333333 5666443
Q ss_pred ---HHHHHHHhHHHHHHHHHHHHhhcC
Q 004367 595 ---FTKWISAQKFYLQAINNWLVKCVS 618 (759)
Q Consensus 595 ---F~~wI~aQk~YV~aLngWL~~cl~ 618 (759)
-+.|..+++.|+.+|-+|-..|-.
T Consensus 76 ~~~~~~~~~~~~~F~~SlA~~s~~~Yi 102 (202)
T smart00146 76 FPDPEDYFEARKNFTRSCAGYSVITYI 102 (202)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999999999999776543
No 66
>PF10428 SOG2: RAM signalling pathway protein; InterPro: IPR019487 The RAM signalling pathway regulates Ace2p transcription factor activity and cellular morphogenesis in Saccharomyces cerevisiae (Baker's yeast), and is thought to be conserved amongst eukaryotes []. This entry is found in one of the components of this pathway, the leucine-rich repeat-containing protein SOG2.
Probab=20.86 E-value=8.5e+02 Score=28.50 Aligned_cols=90 Identities=17% Similarity=0.216 Sum_probs=62.2
Q ss_pred HHHHHHHh-hhHHHHHHHHHHHHHHHhhhhcCCCch----h-hHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-----
Q 004367 458 RKLYDEVK-ASEMIRREYDSKCRILRQLESKGVSSH----K-IDKTRAVVKDLHSRIKVAIHRIDSISKRIEELR----- 526 (759)
Q Consensus 458 KKLY~EVK-a~E~lR~~yeKKc~~Lr~qd~rGad~~----k-IDKTRa~Vk~L~TrI~VaiqsvdsiS~~I~kLR----- 526 (759)
.|||+=++ +-+.+-..| -+|+.+..+++... . -+-....+|+|-.+-..+++.-+....|+..||
T Consensus 302 ekl~~~L~~at~~a~~vl----p~l~~~~~~~~~~a~~~~~~~~~~~~k~k~L~~~C~~~~~~T~~L~~rLs~ik~~~~e 377 (445)
T PF10428_consen 302 EKLYLALQNATDLALHVL----PQLTSQFSKSARAAAQQRAIPPSLVQKWKELISKCNSAIDQTERLKSRLSTIKNQLKE 377 (445)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 45565554 233333333 34444444443221 2 455566799999999999999999999999999
Q ss_pred ---ccchhhHHHHHHHHHHHhHHHHHHH
Q 004367 527 ---DKELQPQLEDLIEGLSRMWEVMFEC 551 (759)
Q Consensus 527 ---DeEL~PQL~ELi~GL~rMWk~M~ec 551 (759)
..--++.+-|+|++|++-|=.+...
T Consensus 378 p~~~~~~~~~fwe~~~~Fiks~i~l~~~ 405 (445)
T PF10428_consen 378 PGGGIREQKEFWEDCNSFIKSWISLLAK 405 (445)
T ss_pred CCCCccccHHHHHHHHHHHHHHHHHHHH
Confidence 4456788889999999999888764
No 67
>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR
Probab=20.79 E-value=1e+03 Score=25.37 Aligned_cols=113 Identities=14% Similarity=0.147 Sum_probs=61.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhhcCCCCcccccCCCCCCCCCCCCCCChHHHHHHHHHHhhcc---CCh--HHHHHHHH
Q 004367 593 SSFTKWISAQKFYLQAINNWLVKCVSLPQKSSRRKRRVPAPPPLRNFGPPIYATCSVWLDLLDW---LPS--KELTDSIK 667 (759)
Q Consensus 593 ssF~~wI~aQk~YV~aLngWL~~cl~~~~e~~~~~~~~~s~~p~r~~aPpIf~lC~~W~~aldr---lp~--k~v~~AIk 667 (759)
..|..=+..-+.|-+.|..|-++++... .+..+...|...+.. +.+ ..+...|.
T Consensus 26 ~f~keRa~iE~~Yak~L~kl~kk~~~~~---------------------e~gTl~~a~~~~~~e~e~~a~~H~~ia~~L~ 84 (242)
T cd07671 26 ELLKQRAQAEERYGKELVQIARKAGGQT---------------------EINTLKASFDQLKQQIENIGNSHIQLAGMLR 84 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCcc---------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667788999999999999865211 124577888766533 211 23444555
Q ss_pred HHHHHHhHHhHhhhhhhcCCCChhhhhhhccccccccccchhhhhccHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Q 004367 668 SLASETSHFLPRQEKNQGKSGSETAVNLLADDASEDWISGFDRFRSSLVGFLGQLNNFSENSVQMYADLKKAIQDAKIKY 747 (759)
Q Consensus 668 ~f~~~v~~l~~qQe~~~~k~~~~~~~~~~~~~~~~~~~~~~~~lq~~L~~~l~~L~~fs~~S~k~yeel~~~~e~~k~~y 747 (759)
.-+..|..+...|.+++.+ . ..++..+|.-....+..|++ |-+.|+...++++.|...|
T Consensus 85 ~~~~~l~~f~~~qke~rK~-~----------------e~~~eK~qk~~~~~~k~l~k----sKk~Ye~~Cke~~~a~q~~ 143 (242)
T cd07671 85 EELKSLEEFRERQKEQRKK-Y----------------EAVMERVQKSKVSLYKKTME----SKKTYEQRCREADEAEQTF 143 (242)
T ss_pred HHHHHHHHHHHHHHHHHHH-H----------------HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 5444455555555332211 0 01223455555544444443 5556666666666554444
No 68
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=20.69 E-value=9.8e+02 Score=25.02 Aligned_cols=87 Identities=20% Similarity=0.283 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHHHHhHHHH
Q 004367 469 MIRREYDSKCRILRQLESKGVSSHKIDKTRAVVKDLHSRIKVAIHRIDSISKRIEELRDKELQPQLEDLIEGLSRMWEVM 548 (759)
Q Consensus 469 ~lR~~yeKKc~~Lr~qd~rGad~~kIDKTRa~Vk~L~TrI~VaiqsvdsiS~~I~kLRDeEL~PQL~ELi~GL~rMWk~M 548 (759)
.....+.||-.++-++...|. +.||+-....|+.++.+...+-+-.+.||..|. .||.--=.+.+..|..|....
T Consensus 127 ~a~~~l~kkr~~~~Kl~~~~~-~~K~~~~~~ev~~~e~~~~~a~~~fe~is~~~k----~El~rF~~erv~dfk~~l~~~ 201 (224)
T cd07623 127 NAQQTLTKKREAKAKLELSGR-TDKLDQAQQEIKEWEAKVDRGQKEFEEISKTIK----KEIERFEKNRVKDFKDIIIKY 201 (224)
T ss_pred HHHHHHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 344556777777777777774 569999999999999999999999999999886 355544455556665555555
Q ss_pred HHHHH-HHHHHHH
Q 004367 549 FECHK-LQFQVIS 560 (759)
Q Consensus 549 ~ecHq-~Q~~ii~ 560 (759)
++..- .|.++|.
T Consensus 202 le~~i~~q~~~~~ 214 (224)
T cd07623 202 LESLLNTQQQLIK 214 (224)
T ss_pred HHHHHHHHHHHHH
Confidence 54432 3444443
No 69
>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=20.11 E-value=1.1e+03 Score=25.53 Aligned_cols=94 Identities=14% Similarity=0.304 Sum_probs=58.7
Q ss_pred hhHHHHHHHHHHHHHHHhhhhc--CCCchhhHhHHHHHHHHHHHHHHHHHHHHHHH----HH---hhhhhcc---chhhH
Q 004367 466 ASEMIRREYDSKCRILRQLESK--GVSSHKIDKTRAVVKDLHSRIKVAIHRIDSIS----KR---IEELRDK---ELQPQ 533 (759)
Q Consensus 466 a~E~lR~~yeKKc~~Lr~qd~r--Gad~~kIDKTRa~Vk~L~TrI~VaiqsvdsiS----~~---I~kLRDe---EL~PQ 533 (759)
.-++-+..|++-|+....--.+ .++. .+.-|++.++++..+.....|.++..- .. .|++-+. +.-|+
T Consensus 128 ~leksKk~Y~~acke~E~A~~k~~ka~~-d~~~tk~~~eK~k~~~~~~~q~~e~aKn~Y~~~L~~~N~~q~k~Y~e~mP~ 206 (252)
T cd07675 128 QMDNSKKKFERECREAEKAQQSYERLDN-DTNATKSDVEKAKQQLNLRTHMADESKNEYAAQLQNFNGEQHKHFYIVIPQ 206 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc-CcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHH
Confidence 4567899999988765433222 1221 144588888888888888888887432 22 3444444 66788
Q ss_pred HHHHHHH--------HHHhHHHHHHHHHHHHHHHH
Q 004367 534 LEDLIEG--------LSRMWEVMFECHKLQFQVIS 560 (759)
Q Consensus 534 L~ELi~G--------L~rMWk~M~ecHq~Q~~ii~ 560 (759)
+++-+|- |-.||+.-.+-...=.-||.
T Consensus 207 vfd~lQ~leE~Ri~~l~e~~~~~~~~E~~v~~~i~ 241 (252)
T cd07675 207 IYKQLQEMDERRTVKLSECYRGFADSERKVIPIIS 241 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 8888776 45677665554444444444
Done!