Query 004367
Match_columns 759
No_of_seqs 194 out of 232
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 22:58:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004367.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004367hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1uru_A Amphiphysin; endocytosi 83.7 22 0.00077 35.1 14.8 111 448-562 119-236 (244)
2 2q12_A DIP13 alpha, DCC-intera 80.7 35 0.0012 34.5 15.2 64 658-749 78-142 (265)
3 2v0o_A FCHO2, FCH domain only 74.5 62 0.0021 32.3 14.9 72 465-541 136-207 (276)
4 4h8s_A DCC-interacting protein 69.0 91 0.0031 33.5 15.5 120 574-749 39-165 (407)
5 2fic_A Bridging integrator 1; 66.5 1.1E+02 0.0036 30.5 14.4 90 462-551 148-238 (251)
6 2efl_A Formin-binding protein 65.1 1E+02 0.0035 31.0 14.3 77 464-540 136-223 (305)
7 2q13_A DCC-interacting protein 65.1 1.3E+02 0.0045 31.9 15.7 64 659-750 79-143 (385)
8 2efl_A Formin-binding protein 60.1 1E+02 0.0035 31.1 13.2 63 595-673 37-99 (305)
9 3aco_A Pacsin2, protein kinase 48.5 1.4E+02 0.0047 31.3 12.2 21 466-486 158-178 (350)
10 4dyl_A Tyrosine-protein kinase 47.3 1.4E+02 0.0049 32.2 12.3 69 465-540 134-215 (406)
11 2efk_A CDC42-interacting prote 46.1 2.4E+02 0.0084 28.3 14.3 78 464-541 129-217 (301)
12 2efk_A CDC42-interacting prote 45.2 1.5E+02 0.0052 29.8 11.6 75 580-673 18-92 (301)
13 3haj_A Human pacsin2 F-BAR; pa 41.0 2.3E+02 0.0079 31.3 13.0 85 457-541 142-236 (486)
14 3mxz_A Tubulin-specific chaper 40.4 2.2E+02 0.0075 26.1 10.5 41 480-520 37-84 (116)
15 3a98_B Engulfment and cell mot 37.7 15 0.0005 36.9 2.4 19 162-180 182-200 (203)
16 2x3v_A Syndapin I, protein kin 36.7 3.7E+02 0.013 27.7 13.2 80 457-541 140-234 (337)
17 3abh_A Pacsin2, protein kinase 36.6 1.5E+02 0.005 30.4 9.9 72 465-541 157-243 (312)
18 4aj5_1 SKA3, spindle and kinet 34.5 69 0.0024 28.9 5.9 88 437-527 5-95 (101)
19 3caz_A BAR protein; thermo-aci 33.4 3.8E+02 0.013 26.8 11.6 82 445-548 95-183 (294)
20 2j9w_A VPS28, VPS28-PROV prote 33.1 67 0.0023 29.1 5.7 78 512-592 18-97 (102)
21 2j9u_A VPS28, vacuolar protein 30.9 59 0.002 29.1 4.9 77 512-591 15-91 (96)
22 3rq9_A TSI2, type VI secretion 30.6 58 0.002 28.0 4.5 35 508-542 8-45 (85)
23 2xvc_A ESCRT-III, SSO0910; cel 29.7 30 0.001 28.4 2.5 33 457-489 12-54 (59)
24 1h7c_A Tubulin-specific chaper 28.6 2.9E+02 0.01 24.8 9.2 28 493-520 56-83 (108)
25 3stq_A TSI2, putative uncharac 26.9 67 0.0023 28.3 4.4 34 508-541 33-69 (102)
26 4efa_E V-type proton ATPase su 25.8 3.1E+02 0.01 27.2 9.8 68 466-536 54-122 (233)
27 3i2w_A Syndapin, LD46328P; EFC 25.4 2.8E+02 0.0096 27.9 9.7 73 465-542 135-222 (290)
28 3oja_A Leucine-rich immune mol 22.0 7.7E+02 0.026 26.6 15.3 56 493-548 415-472 (487)
29 1qsd_A Protein (beta-tubulin b 22.0 4.3E+02 0.015 23.7 9.3 56 478-536 31-94 (106)
30 2x3v_A Syndapin I, protein kin 20.7 6.8E+02 0.023 25.6 11.7 62 595-675 43-104 (337)
No 1
>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A {Drosophila melanogaster} SCOP: a.238.1.1
Probab=83.70 E-value=22 Score=35.09 Aligned_cols=111 Identities=12% Similarity=0.107 Sum_probs=76.1
Q ss_pred hHHHHHHHHHHHHHHH----HhhhHHHHHHHHHHHHHHHhhhhcC---CCchhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004367 448 STLDRLYAWERKLYDE----VKASEMIRREYDSKCRILRQLESKG---VSSHKIDKTRAVVKDLHSRIKVAIHRIDSISK 520 (759)
Q Consensus 448 STLdrLyAWEKKLY~E----VKa~E~lR~~yeKKc~~Lr~qd~rG---ad~~kIDKTRa~Vk~L~TrI~VaiqsvdsiS~ 520 (759)
..|.+|. +.|.+ +|-.+.-|+.||+.-..|.++-.++ .+..+|.++...+....-.+.-.-.-+-.---
T Consensus 119 ~Pl~~~~----~~~~~i~~~ikKR~~k~lDyD~~~~~l~kl~~k~~k~kd~~kl~~ae~el~~ak~~ye~ln~~L~~eLp 194 (244)
T 1uru_A 119 IPLNTYT----GQFPEMKKKVEKRNRKLIDYDGQRHSFQNLQANANKRKDDVKLTKGREQLEEARRTYEILNTELHDELP 194 (244)
T ss_dssp HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCBTTBCCTTTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4455555 45554 4567888999999998888887664 55666666665554444444332233333344
Q ss_pred HhhhhhccchhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 004367 521 RIEELRDKELQPQLEDLIEGLSRMWEVMFECHKLQFQVISVA 562 (759)
Q Consensus 521 ~I~kLRDeEL~PQL~ELi~GL~rMWk~M~ecHq~Q~~ii~~~ 562 (759)
.+..+|.+-+.|+|..+|.......+.|.+.|+.=..++..+
T Consensus 195 ~l~~~~~~~~~~~l~~fv~~q~~~~~~~~~~~~~l~~~~~~l 236 (244)
T 1uru_A 195 ALYDSRILFLVTNLQTLFATEQVFHNETAKIYSELEAIVDKL 236 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888999999999999999988888887766666654
No 2
>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A
Probab=80.74 E-value=35 Score=34.54 Aligned_cols=64 Identities=13% Similarity=0.180 Sum_probs=36.9
Q ss_pred ChHHHHHHHHHHHHHHhHHhHhhhhhhcCCCChhhhhhhccccccccccchhhhhccH-HHHHHHHhhhhHHHHHHHHHH
Q 004367 658 PSKELTDSIKSLASETSHFLPRQEKNQGKSGSETAVNLLADDASEDWISGFDRFRSSL-VGFLGQLNNFSENSVQMYADL 736 (759)
Q Consensus 658 p~k~v~~AIk~f~~~v~~l~~qQe~~~~k~~~~~~~~~~~~~~~~~~~~~~~~lq~~L-~~~l~~L~~fs~~S~k~yeel 736 (759)
+|..+..+|+.|...++.|+.....- ...+ ..+..-|.+|-..-++.+.+.
T Consensus 78 ~d~~~~~~L~~f~~~l~ei~~~~~~l----------------------------~~~~~~~~~~PL~~f~~~dlk~~ke~ 129 (265)
T 2q12_A 78 DDEVMSSTLQQFSKVIDELSSCHAVL----------------------------STQLADAMMFPITQFKERDLKEILTL 129 (265)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHTHHHHHHHHHTHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555789999999999998654331 1111 233445666655555555555
Q ss_pred HHHHHHHHHHhhh
Q 004367 737 KKAIQDAKIKYDE 749 (759)
Q Consensus 737 ~~~~e~~k~~y~~ 749 (759)
|++.|.++..|..
T Consensus 130 kk~fdk~~~~yd~ 142 (265)
T 2q12_A 130 KEVFQIASNDHDA 142 (265)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555543
No 3
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=74.46 E-value=62 Score=32.32 Aligned_cols=72 Identities=14% Similarity=0.308 Sum_probs=55.5
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhcCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHH
Q 004367 465 KASEMIRREYDSKCRILRQLESKGVSSHKIDKTRAVVKDLHSRIKVAIHRIDSISKRIEELRDKELQPQLEDLIEGL 541 (759)
Q Consensus 465 Ka~E~lR~~yeKKc~~Lr~qd~rGad~~kIDKTRa~Vk~L~TrI~VaiqsvdsiS~~I~kLRDeEL~PQL~ELi~GL 541 (759)
++-++.|..|+++|+.+.++...|.....++|.++-+++....+..+++..+.+- .+. ++.+|++++.+|.|
T Consensus 136 ~~l~Kak~~Y~~~c~e~e~~~~~~~s~k~~eK~~~k~~ka~~~Y~~~v~~~n~~~---~~~--~~~~~~~~~~lQ~l 207 (276)
T 2v0o_A 136 QALQKSKENYNAKCVEQERLKKEGATQREIEKAAVKSKKATDTYKLYVEKYALAK---ADF--EQKMTETAQKFQDI 207 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH--HHHHHHHHHHHHHH
Confidence 4557789999999999987776677788899999888888888888887776543 334 56778888776654
No 4
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}
Probab=69.04 E-value=91 Score=33.46 Aligned_cols=120 Identities=13% Similarity=0.055 Sum_probs=66.5
Q ss_pred ChhHHHHHHHHHHHHH-------HHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCCcccccCCCCCCCCCCCCCCChHHHH
Q 004367 574 SDSHRQITIHLENELS-------SLSSSFTKWISAQKFYLQAINNWLVKCVSLPQKSSRRKRRVPAPPPLRNFGPPIYAT 646 (759)
Q Consensus 574 se~hr~at~qLE~El~-------~W~ssF~~wI~aQk~YV~aLngWL~~cl~~~~e~~~~~~~~~s~~p~r~~aPpIf~l 646 (759)
|..=|.....+|.++. +......+++.+++.|..+.+.-+ ..|...... + . +
T Consensus 39 SP~FRa~l~~~E~~~~~l~~~l~kl~k~~~~~~~~~~~~~~a~~~f~-~~l~~~~~~--------~--~---~------- 97 (407)
T 4h8s_A 39 SPQTRSLLSVFEEDAGTLTDYTNQLLQAMQRVYGAQNEMCLATQQLS-KQLLAYEKQ--------N--F---A------- 97 (407)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHTTGGGS--------C--C---C-------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhc--------c--c---c-------
Confidence 4445666666666654 444455566667777777777743 344322110 0 0 0
Q ss_pred HHHHHHhhccCChHHHHHHHHHHHHHHhHHhHhhhhhhcCCCChhhhhhhccccccccccchhhhhccHHHHHHHHhhhh
Q 004367 647 CSVWLDLLDWLPSKELTDSIKSLASETSHFLPRQEKNQGKSGSETAVNLLADDASEDWISGFDRFRSSLVGFLGQLNNFS 726 (759)
Q Consensus 647 C~~W~~aldrlp~k~v~~AIk~f~~~v~~l~~qQe~~~~k~~~~~~~~~~~~~~~~~~~~~~~~lq~~L~~~l~~L~~fs 726 (759)
..-.|.++..+++.|...+..+...+..-. ..++ ..+++-|.+|-
T Consensus 98 --------~~~~d~~~~~~l~~f~~~~~ei~~~~~~L~------------------------~~~~---~~i~~pL~~f~ 142 (407)
T 4h8s_A 98 --------LGKGDEEVISTLHYFSKVVDELNLLHTELA------------------------KQLA---DTMVLPIIQFR 142 (407)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHH---HHTHHHHHHHH
T ss_pred --------ccCCcHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHH---HHHHHHHHHHH
Confidence 011355677788999998888876543310 0011 12455666776
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 004367 727 ENSVQMYADLKKAIQDAKIKYDE 749 (759)
Q Consensus 727 ~~S~k~yeel~~~~e~~k~~y~~ 749 (759)
..-++.|.++|++.|.+...|..
T Consensus 143 k~di~~~ke~kK~Fek~~~~Yd~ 165 (407)
T 4h8s_A 143 EKDLTEVSTLKDLFGLASNEHDL 165 (407)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666777777776666666654
No 5
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=66.45 E-value=1.1e+02 Score=30.53 Aligned_cols=90 Identities=10% Similarity=0.017 Sum_probs=50.5
Q ss_pred HHHhhhHHHHHHHHHHHHHHHhhhhcCC-CchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHH
Q 004367 462 DEVKASEMIRREYDSKCRILRQLESKGV-SSHKIDKTRAVVKDLHSRIKVAIHRIDSISKRIEELRDKELQPQLEDLIEG 540 (759)
Q Consensus 462 ~EVKa~E~lR~~yeKKc~~Lr~qd~rGa-d~~kIDKTRa~Vk~L~TrI~VaiqsvdsiS~~I~kLRDeEL~PQL~ELi~G 540 (759)
+-+|-.+.-|+.||+.-..|+++-.++. +..+|-++...++.....+.-.-.-+-.---.+..+|-+-+.|.|..++..
T Consensus 148 ~~ikKR~~k~lDyD~~~~~l~kl~~k~~kd~~kl~kae~el~~ak~~ye~ln~~L~~eLp~l~~~~~~~~~~~l~~f~~~ 227 (251)
T 2fic_A 148 SRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKAEEELIKAQKVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGL 227 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455778899999988777777766554 556666666555444444432222222223344555666667777777777
Q ss_pred HHHhHHHHHHH
Q 004367 541 LSRMWEVMFEC 551 (759)
Q Consensus 541 L~rMWk~M~ec 551 (759)
-....+.|.+.
T Consensus 228 Q~~f~~~~~~~ 238 (251)
T 2fic_A 228 EENFHKEMSKL 238 (251)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66655555433
No 6
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=65.14 E-value=1e+02 Score=31.05 Aligned_cols=77 Identities=16% Similarity=0.240 Sum_probs=40.9
Q ss_pred HhhhHHHHHHHHHHHHHHHhhhhc--------CCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc---cchhh
Q 004367 464 VKASEMIRREYDSKCRILRQLESK--------GVSSHKIDKTRAVVKDLHSRIKVAIHRIDSISKRIEELRD---KELQP 532 (759)
Q Consensus 464 VKa~E~lR~~yeKKc~~Lr~qd~r--------Gad~~kIDKTRa~Vk~L~TrI~VaiqsvdsiS~~I~kLRD---eEL~P 532 (759)
++.-++.|..|+.+|+.+.....+ +.....++|++.-...+..++..|-..-.......++++. ++..|
T Consensus 136 ~~~l~KaK~~Y~~~~~e~e~a~~~~~~~~~~~~~s~~~~eK~~~k~~~~~~~~~~a~~~Y~~~v~~~n~~~~~~~~~~~~ 215 (305)
T 2efl_A 136 WKQLESSKRRFERDCKEADRAQQYFEKMDADINVTKADVEKARQQAQIRHQMAEDSKADYSSILQKFNHEQHEYYHTHIP 215 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446678899999999887764432 3333467777766544443333332222222223333322 45556
Q ss_pred HHHHHHHH
Q 004367 533 QLEDLIEG 540 (759)
Q Consensus 533 QL~ELi~G 540 (759)
++++-+|-
T Consensus 216 ~~~~~lQ~ 223 (305)
T 2efl_A 216 NIFQKIQE 223 (305)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66554443
No 7
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A
Probab=65.08 E-value=1.3e+02 Score=31.91 Aligned_cols=64 Identities=13% Similarity=0.219 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHHHHHhHHhHhhhhhhcCCCChhhhhhhccccccccccchhhhhccHH-HHHHHHhhhhHHHHHHHHHHH
Q 004367 659 SKELTDSIKSLASETSHFLPRQEKNQGKSGSETAVNLLADDASEDWISGFDRFRSSLV-GFLGQLNNFSENSVQMYADLK 737 (759)
Q Consensus 659 ~k~v~~AIk~f~~~v~~l~~qQe~~~~k~~~~~~~~~~~~~~~~~~~~~~~~lq~~L~-~~l~~L~~fs~~S~k~yeel~ 737 (759)
+..+..+++.|...++.|...... |...+. .+..-|.+|-..-++.+.++|
T Consensus 79 d~~v~~~l~~f~~~~~ei~~~~~~----------------------------l~~~~~~~~~~PL~~f~~~di~~~ke~k 130 (385)
T 2q13_A 79 DEVMSSTLQQFSKVIDELSSCHAV----------------------------LSTQLADAMMFPITQFKERDLKEILTLK 130 (385)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHTHHHHHHHHHTHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556788888888777432221 111122 224557777666666666666
Q ss_pred HHHHHHHHHhhhh
Q 004367 738 KAIQDAKIKYDEL 750 (759)
Q Consensus 738 ~~~e~~k~~y~~~ 750 (759)
++.|.++..|...
T Consensus 131 k~fek~~~~yd~a 143 (385)
T 2q13_A 131 EVFQIASNDHDAA 143 (385)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666555543
No 8
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=60.14 E-value=1e+02 Score=31.06 Aligned_cols=63 Identities=10% Similarity=0.190 Sum_probs=39.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHhhcCCCCcccccCCCCCCCCCCCCCCChHHHHHHHHHHhhccCChHHHHHHHHHHHHHH
Q 004367 595 FTKWISAQKFYLQAINNWLVKCVSLPQKSSRRKRRVPAPPPLRNFGPPIYATCSVWLDLLDWLPSKELTDSIKSLASET 673 (759)
Q Consensus 595 F~~wI~aQk~YV~aLngWL~~cl~~~~e~~~~~~~~~s~~p~r~~aPpIf~lC~~W~~aldrlp~k~v~~AIk~f~~~v 673 (759)
|..=...-+.|.+.|..|-+++...... +...|..+.+...|...+..+ +.+...-..|+..|
T Consensus 37 ~~eRa~iE~eYak~L~kLa~~~~~~~~~--------------~~~~~~~~t~~~aw~~~~~~~--e~~a~~h~~~a~~l 99 (305)
T 2efl_A 37 VKERTEIELSYAKQLRNLSKKYQPKKNS--------------KEEEEYKYTSCKAFISNLNEM--NDYAGQHEVISENM 99 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCC---------------------CTTSHHHHHHHHHHHHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccc--------------CccccccccHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 4555677899999999999987532210 001233557889998777664 44455555555555
No 9
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=48.45 E-value=1.4e+02 Score=31.32 Aligned_cols=21 Identities=14% Similarity=0.216 Sum_probs=15.9
Q ss_pred hhHHHHHHHHHHHHHHHhhhh
Q 004367 466 ASEMIRREYDSKCRILRQLES 486 (759)
Q Consensus 466 a~E~lR~~yeKKc~~Lr~qd~ 486 (759)
.-++.|..|+++|+.+.....
T Consensus 158 ~l~KaKk~Y~~~c~e~e~a~~ 178 (350)
T 3aco_A 158 EVEAAKKAHHAACKEEKLAIS 178 (350)
T ss_dssp HHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456778899999988766543
No 10
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=47.28 E-value=1.4e+02 Score=32.24 Aligned_cols=69 Identities=16% Similarity=0.139 Sum_probs=37.9
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhcCCCc---hhhHhHHHHHHHHHH-------HHHHHHHHHHHHHHHhhhhhcc---chh
Q 004367 465 KASEMIRREYDSKCRILRQLESKGVSS---HKIDKTRAVVKDLHS-------RIKVAIHRIDSISKRIEELRDK---ELQ 531 (759)
Q Consensus 465 Ka~E~lR~~yeKKc~~Lr~qd~rGad~---~kIDKTRa~Vk~L~T-------rI~VaiqsvdsiS~~I~kLRDe---EL~ 531 (759)
+.=++.+..|++.|+.......+=.+. ..++|++.-...... .+..++++. |+.++. +.+
T Consensus 134 ~~lekaKk~Y~~~cke~e~A~~k~~~~~k~ke~eK~~~k~~k~~~~~~~a~neY~~~l~~~-------N~~~~~yy~~~l 206 (406)
T 4dyl_A 134 QDIEKLKSQYRALARDSAQAKRKYQEASKDKDRDKAKDKYVRSLWKLFAHHNRYVLGVRAA-------QLHHQHHHQLLL 206 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhh
Confidence 566788999999998876655432211 335555554444433 344444333 344443 677
Q ss_pred hHHHHHHHH
Q 004367 532 PQLEDLIEG 540 (759)
Q Consensus 532 PQL~ELi~G 540 (759)
|++++-+|.
T Consensus 207 p~~~d~lQ~ 215 (406)
T 4dyl_A 207 PGLLRSLQD 215 (406)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887765443
No 11
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=46.14 E-value=2.4e+02 Score=28.28 Aligned_cols=78 Identities=13% Similarity=0.199 Sum_probs=38.5
Q ss_pred HhhhHHHHHHHHHHHHHHHhhhhcCCC--------chhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc---cchhh
Q 004367 464 VKASEMIRREYDSKCRILRQLESKGVS--------SHKIDKTRAVVKDLHSRIKVAIHRIDSISKRIEELRD---KELQP 532 (759)
Q Consensus 464 VKa~E~lR~~yeKKc~~Lr~qd~rGad--------~~kIDKTRa~Vk~L~TrI~VaiqsvdsiS~~I~kLRD---eEL~P 532 (759)
++.-++.|..|++.|+.+.....+... ...++|.++-+.....++.-|-..=.......++.+. .+.+|
T Consensus 129 ~~~l~KaKk~Y~~~~~e~e~a~~~~~~a~~~~~~s~~~~eK~~~k~~~~~~~~~~a~~~Y~~~v~~~n~~~~~~~~~~~p 208 (301)
T 2efk_A 129 FKQLENSKRKFERDCREAEKAAQTAERLDQDINATKADVEKAKQQAHLRSHMAEESKNEYAAQLQRFNRDQAHFYFSQMP 208 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345668899999999888765443221 1234444444433322222221111112223344433 35667
Q ss_pred HHHHHHHHH
Q 004367 533 QLEDLIEGL 541 (759)
Q Consensus 533 QL~ELi~GL 541 (759)
++++-+|.|
T Consensus 209 ~~~~~lQ~l 217 (301)
T 2efk_A 209 QIFDKLQDM 217 (301)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777655543
No 12
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=45.19 E-value=1.5e+02 Score=29.83 Aligned_cols=75 Identities=7% Similarity=0.164 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCCcccccCCCCCCCCCCCCCCChHHHHHHHHHHhhccCCh
Q 004367 580 ITIHLENELSSLSSSFTKWISAQKFYLQAINNWLVKCVSLPQKSSRRKRRVPAPPPLRNFGPPIYATCSVWLDLLDWLPS 659 (759)
Q Consensus 580 at~qLE~El~~W~ssF~~wI~aQk~YV~aLngWL~~cl~~~~e~~~~~~~~~s~~p~r~~aPpIf~lC~~W~~aldrlp~ 659 (759)
.-..|-.+|..| |..=...-+.|.+.|..|-+++...-.. . ...-+.+.++..|...+..+
T Consensus 18 ~g~~~~~el~~f---~keRa~iE~eYak~L~kLakk~~~~~~~-----~---------~~~~~~~t~~~~w~~~l~~~-- 78 (301)
T 2efk_A 18 WGLDLLDRYVKF---VKERTEVEQAYAKQLRSLVKKYLPKRPA-----K---------DDPESKFSQQQSFVQILQEV-- 78 (301)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHSCC---------------------CTTSHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhccccc-----c---------ccccccchHHHHHHHHHHHH--
Confidence 334444444444 3344566789999999999998633100 0 00112347888998887652
Q ss_pred HHHHHHHHHHHHHH
Q 004367 660 KELTDSIKSLASET 673 (759)
Q Consensus 660 k~v~~AIk~f~~~v 673 (759)
+.+...-..|+..|
T Consensus 79 e~~a~~h~~~a~~L 92 (301)
T 2efk_A 79 NDFAGQRELVAENL 92 (301)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34445555555555
No 13
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=40.95 E-value=2.3e+02 Score=31.29 Aligned_cols=85 Identities=9% Similarity=0.151 Sum_probs=46.8
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhhhh--------cCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--
Q 004367 457 ERKLYDEVKASEMIRREYDSKCRILRQLES--------KGVSSHKIDKTRAVVKDLHSRIKVAIHRIDSISKRIEELR-- 526 (759)
Q Consensus 457 EKKLY~EVKa~E~lR~~yeKKc~~Lr~qd~--------rGad~~kIDKTRa~Vk~L~TrI~VaiqsvdsiS~~I~kLR-- 526 (759)
+|+|=+=++.-++.|..|+++|+..+.... .+.....++|.+.-+.+...++.-+-.--.......++.|
T Consensus 142 qk~l~~~~~~l~KaKk~Y~~~cke~e~a~~~~~~a~~d~~~t~k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~ 221 (486)
T 3haj_A 142 QKPWAKKLKEVEAAKKAHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQ 221 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444456677889999999987766532 2333456677666666655444333322222223333333
Q ss_pred ccchhhHHHHHHHHH
Q 004367 527 DKELQPQLEDLIEGL 541 (759)
Q Consensus 527 DeEL~PQL~ELi~GL 541 (759)
=++.+|++++-+|-|
T Consensus 222 y~~~~~~~~~~lQ~l 236 (486)
T 3haj_A 222 YMENMEQVFEQCQQF 236 (486)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 235566666666654
No 14
>3mxz_A Tubulin-specific chaperone A; helix bundle; 1.60A {Arabidopsis thaliana}
Probab=40.43 E-value=2.2e+02 Score=26.11 Aligned_cols=41 Identities=20% Similarity=0.389 Sum_probs=28.4
Q ss_pred HHHhhhhcCCCchhh-------HhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004367 480 ILRQLESKGVSSHKI-------DKTRAVVKDLHSRIKVAIHRIDSISK 520 (759)
Q Consensus 480 ~Lr~qd~rGad~~kI-------DKTRa~Vk~L~TrI~VaiqsvdsiS~ 520 (759)
++.++...|.|...| +.|++.|-+++.||.-++..+..+-.
T Consensus 37 kiekmk~e~~dey~iKkq~evL~Et~~mipd~~~RL~~a~~~L~~~l~ 84 (116)
T 3mxz_A 37 KTADMKDKGADPYDLKQQENVLGESRMMIPDCHKRLESALADLKSTLA 84 (116)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 333444457766655 67888899999999888877766543
No 15
>3a98_B Engulfment and cell motility protein 1; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens} PDB: 2vsz_A
Probab=37.72 E-value=15 Score=36.89 Aligned_cols=19 Identities=21% Similarity=0.415 Sum_probs=15.1
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q 004367 162 SQFEDSPLPPETQPWDYFG 180 (759)
Q Consensus 162 ~~~~~pp~PP~~s~WDFF~ 180 (759)
.|-.+||.||.++.||||.
T Consensus 182 ip~~~ppip~~P~~~dF~~ 200 (203)
T 3a98_B 182 IPDAPPPIPKEPSNYDFVY 200 (203)
T ss_dssp CCSSCCCCCCCCSCCCCSS
T ss_pred CCCCCCCCCcCCCCcceee
Confidence 4456677888999999986
No 16
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Probab=36.71 E-value=3.7e+02 Score=27.67 Aligned_cols=80 Identities=15% Similarity=0.186 Sum_probs=41.0
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhhh-----hcC---CCchhhHhHHHHHHHH-------HHHHHHHHHHHHHHHHH
Q 004367 457 ERKLYDEVKASEMIRREYDSKCRILRQLE-----SKG---VSSHKIDKTRAVVKDL-------HSRIKVAIHRIDSISKR 521 (759)
Q Consensus 457 EKKLY~EVKa~E~lR~~yeKKc~~Lr~qd-----~rG---ad~~kIDKTRa~Vk~L-------~TrI~VaiqsvdsiS~~ 521 (759)
+|.|=+=++.-++.|..|+++|+.+.... .++ .....++|.+.-+.++ ...+..+++.++.+-
T Consensus 140 ~k~~~~~~~~l~KaKk~Y~~~c~e~e~a~~~~~~~~~~~~~s~k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~-- 217 (337)
T 2x3v_A 140 QKPWAKKMKELEAAKKAYHLACKEERLAMTREMNSKTEQSVTPEQQKKLVDKVDKCRQDVQKTQEKYEKVLEDVGKTT-- 217 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhccccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--
Confidence 33444444566788999999998865332 111 2223445544444444 334444444444331
Q ss_pred hhhhhccchhhHHHHHHHHH
Q 004367 522 IEELRDKELQPQLEDLIEGL 541 (759)
Q Consensus 522 I~kLRDeEL~PQL~ELi~GL 541 (759)
-+=++.+|++++.+|.|
T Consensus 218 ---~~~~~~~~~~~~~~Q~l 234 (337)
T 2x3v_A 218 ---PQYMEGMEQVFEQCQQF 234 (337)
T ss_dssp ---HHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHH
Confidence 12234566666665543
No 17
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=36.55 E-value=1.5e+02 Score=30.41 Aligned_cols=72 Identities=17% Similarity=0.231 Sum_probs=46.4
Q ss_pred hhhHHHHHHHHHHHHHHHhhhh-----cC---CC-------chhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q 004367 465 KASEMIRREYDSKCRILRQLES-----KG---VS-------SHKIDKTRAVVKDLHSRIKVAIHRIDSISKRIEELRDKE 529 (759)
Q Consensus 465 Ka~E~lR~~yeKKc~~Lr~qd~-----rG---ad-------~~kIDKTRa~Vk~L~TrI~VaiqsvdsiS~~I~kLRDeE 529 (759)
+.-++.|..|+++|+.+..... +| .. ..+++|++..+......+..+++..+.+-..- ++
T Consensus 157 ~~l~KaK~~Y~~~c~e~e~a~~~~~~~~~d~~~~~k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~~-----~~ 231 (312)
T 3abh_A 157 KEVEAAKKAHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQY-----ME 231 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHHHHHHTCTTCCSHHHHGGGTTTTSHHHHHHHHHHHHHHHHHHHHHHHHHH-----HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-----HH
Confidence 4457889999999988766543 12 11 12345666667777777888888887763322 35
Q ss_pred hhhHHHHHHHHH
Q 004367 530 LQPQLEDLIEGL 541 (759)
Q Consensus 530 L~PQL~ELi~GL 541 (759)
.+|++++.+|.|
T Consensus 232 ~~~~~~~~~Q~l 243 (312)
T 3abh_A 232 NMEQVFEQCQQF 243 (312)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 677777766654
No 18
>4aj5_1 SKA3, spindle and kinetochore-associated protein 3; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=34.48 E-value=69 Score=28.92 Aligned_cols=88 Identities=26% Similarity=0.179 Sum_probs=63.1
Q ss_pred ccccccccchhhHHHHHHHHHHHHHH-HHh--hhHHHHHHHHHHHHHHHhhhhcCCCchhhHhHHHHHHHHHHHHHHHHH
Q 004367 437 DSIHMISSSHASTLDRLYAWERKLYD-EVK--ASEMIRREYDSKCRILRQLESKGVSSHKIDKTRAVVKDLHSRIKVAIH 513 (759)
Q Consensus 437 ee~~m~sgshsSTLdrLyAWEKKLY~-EVK--a~E~lR~~yeKKc~~Lr~qd~rGad~~kIDKTRa~Vk~L~TrI~Vaiq 513 (759)
.+||..-.++++|||+=.|+=+.=.+ |=- .+-.+|+.||=-|.. +.| ||.-...+||.|+.-..+..=|..+-=
T Consensus 5 ~~Ff~KLR~La~tLe~Eta~L~~al~~edsd~E~~~~rilhdl~seV-~~L--K~dv~~~L~k~~~e~qe~~~FIKa~kv 81 (101)
T 4aj5_1 5 RSFCGKLRSLASTLDCETARLQRALDGEESDFEDYPMRILYDLHSEV-QTL--KDDINILLDKARLENQEGIDFIKATKV 81 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHH-HHH--HHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 35677778999999988777443333 111 123689988877642 222 344457889999999999888888888
Q ss_pred HHHHHHHHhhhhhc
Q 004367 514 RIDSISKRIEELRD 527 (759)
Q Consensus 514 svdsiS~~I~kLRD 527 (759)
-+..++.-|.+||.
T Consensus 82 L~~rns~DI~~ire 95 (101)
T 4aj5_1 82 LMEKNSMDIMKIRE 95 (101)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHH
Confidence 88889999999874
No 19
>3caz_A BAR protein; thermo-acidophilic RED ALGA, protein structure initiative, PSI, center for eukaryotic structural genomics, signaling protein; 3.34A {Galdieria sulphuraria}
Probab=33.36 E-value=3.8e+02 Score=26.83 Aligned_cols=82 Identities=24% Similarity=0.393 Sum_probs=59.3
Q ss_pred chhhHHHHHHHHHHHHHHHH-------hhhHHHHHHHHHHHHHHHhhhhcCCCchhhHhHHHHHHHHHHHHHHHHHHHHH
Q 004367 445 SHASTLDRLYAWERKLYDEV-------KASEMIRREYDSKCRILRQLESKGVSSHKIDKTRAVVKDLHSRIKVAIHRIDS 517 (759)
Q Consensus 445 shsSTLdrLyAWEKKLY~EV-------Ka~E~lR~~yeKKc~~Lr~qd~rGad~~kIDKTRa~Vk~L~TrI~Vaiqsvds 517 (759)
-|.--+-||+.==.|.++++ |.-..+|..||----.|..|+.+..++.+|...+.-+++-.|-+.-
T Consensus 95 khgreiarllekiqkyfQ~IEtlK~ql~nf~e~RLiYDHYKlKvdELEK~~KdSeKI~RNQsKLssAEtaYkq------- 167 (294)
T 3caz_A 95 KHGREIARLLEKIQKYRQEIEEIKKEYKETDKYRERYDHYKVKLDNLEKKNKDQERIERNQQKFKDAEAAYSS------- 167 (294)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH-------
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHHhccchHHHHHHhHHHhhhHHHHHHH-------
Confidence 36666677776666666654 5778899999998888999999888888888777666665554431
Q ss_pred HHHHhhhhhccchhhHHHHHHHHHHHhHHHH
Q 004367 518 ISKRIEELRDKELQPQLEDLIEGLSRMWEVM 548 (759)
Q Consensus 518 iS~~I~kLRDeEL~PQL~ELi~GL~rMWk~M 548 (759)
-+.+||+.|-..|+.-
T Consensus 168 ---------------vcsDiInkMnkll~n~ 183 (294)
T 3caz_A 168 ---------------VCADLIQKMETVWKKH 183 (294)
T ss_dssp ---------------HHHHHHHHHHHHHHHH
T ss_pred ---------------HHHHHHHHHHHHHHHH
Confidence 2456777777778754
No 20
>2j9w_A VPS28, VPS28-PROV protein; NZF finger, HIV budding, protein transport; 1.30A {Xenopus laevis}
Probab=33.14 E-value=67 Score=29.05 Aligned_cols=78 Identities=23% Similarity=0.321 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhhhhhccchhhHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHhcCCCCcccCCChhHHHHHHHHHHHHH
Q 004367 512 IHRIDSISKRIEELRDKELQPQLEDLIEGLSRMWE--VMFECHKLQFQVISVAYNNAHSKISIKSDSHRQITIHLENELS 589 (759)
Q Consensus 512 iqsvdsiS~~I~kLRDeEL~PQL~ELi~GL~rMWk--~M~ecHq~Q~~ii~~~~~~~~~~~~~~se~hr~at~qLE~El~ 589 (759)
|..+|++--.|-- =++|+|-|.+|+.+|.||=. .=.+.+.+-.+-+..++.- ...-+.+-+.-||....||..-.
T Consensus 18 IT~mDaLKLn~~a--~DqLhPlL~dL~~sl~r~~~lp~dfegk~kv~~Wl~~Ln~M-~AsdeL~e~q~RqllfDle~aY~ 94 (102)
T 2j9w_A 18 ITVMDKLRLEIRA--MDEIQPDLRELMETMNRMSHLPPDFEGREKVSQWLQKLSSM-SASDELDDSQVRQMLFDLESAYN 94 (102)
T ss_dssp HHHHHHHHTTCCB--HHHHHHHHHHHHHHHHHCTTSCTTCHHHHHHHHHHHHHHTS-CTTCBCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcchh--HHhhhhHHHHHHHhcccCCCCCCCCccHHHHHHHHHHHcCC-cccccCCHHHHHHHHHHHHHHHH
Confidence 4556665443333 36999999999999999931 1123343333333333221 11223444445565555555544
Q ss_pred HHH
Q 004367 590 SLS 592 (759)
Q Consensus 590 ~W~ 592 (759)
.++
T Consensus 95 ~F~ 97 (102)
T 2j9w_A 95 AFN 97 (102)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 21
>2j9u_A VPS28, vacuolar protein sorting-associated protein 28; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: a.24.28.1 PDB: 2j9v_A 2g3k_A
Probab=30.85 E-value=59 Score=29.10 Aligned_cols=77 Identities=18% Similarity=0.231 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhhhhhccchhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCCcccCCChhHHHHHHHHHHHHHHH
Q 004367 512 IHRIDSISKRIEELRDKELQPQLEDLIEGLSRMWEVMFECHKLQFQVISVAYNNAHSKISIKSDSHRQITIHLENELSSL 591 (759)
Q Consensus 512 iqsvdsiS~~I~kLRDeEL~PQL~ELi~GL~rMWk~M~ecHq~Q~~ii~~~~~~~~~~~~~~se~hr~at~qLE~El~~W 591 (759)
|..+|++--.|-- =++|+|-|.+|+.+|.||=..=.+.+.+-.+-+..++.- ...-+.+-+.-||....||..-..+
T Consensus 15 IT~mDaLKL~~~a--~DqLhP~L~dL~~sl~r~~~~dfegk~kv~~Wl~~Ln~M-~AsdeL~e~q~RqllfDle~aY~~F 91 (96)
T 2j9u_A 15 ITVMDALKLNYNA--KDQLHPLLAELLISINRVTRDDFENRSKLIDWIVRINKL-SIGDTLTETQIRELLFDLELAYKSF 91 (96)
T ss_dssp HHHHHHHHTTCCB--HHHHHHHHHHHHHHHHHHCCCCCTTHHHHHHHHHHHHTS-CTTCBCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcchh--HHhhCchHHHHHHHccCCCCCCCchHHHHHHHHHHHcCC-cccccCCHHHHHHHHHHHHHHHHHH
Confidence 4455555443332 369999999999999998322223344333334433221 1122344444455555555544433
No 22
>3rq9_A TSI2, type VI secretion immunity protein; antitoxin, TSE2-BI protein; 1.00A {Pseudomonas aeruginosa} PDB: 3vpv_A
Probab=30.60 E-value=58 Score=27.96 Aligned_cols=35 Identities=20% Similarity=0.375 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHhhhhhccchhhH---HHHHHHHHH
Q 004367 508 IKVAIHRIDSISKRIEELRDKELQPQ---LEDLIEGLS 542 (759)
Q Consensus 508 I~VaiqsvdsiS~~I~kLRDeEL~PQ---L~ELi~GL~ 542 (759)
++||||+|++-.+++..+-|++--|- |..|+-|+-
T Consensus 8 LmvAIQcVaAei~~Lda~l~e~~ppna~elEqLLV~fd 45 (85)
T 3rq9_A 8 LMVAIQCVAARTRELDAQLQNDDPQNAAELEQLLVGYD 45 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred ehhhHHHHHHHHHHHHhccccccCCCcchhHHHHhhhH
Confidence 57899999999999999999999998 555665543
No 23
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=29.70 E-value=30 Score=28.39 Aligned_cols=33 Identities=27% Similarity=0.455 Sum_probs=25.6
Q ss_pred HHHHHHHHhhh----------HHHHHHHHHHHHHHHhhhhcCC
Q 004367 457 ERKLYDEVKAS----------EMIRREYDSKCRILRQLESKGV 489 (759)
Q Consensus 457 EKKLY~EVKa~----------E~lR~~yeKKc~~Lr~qd~rGa 489 (759)
|.+||+++++. ++.++.=|.=...||+|+.||.
T Consensus 12 e~~lL~yIr~sGGildI~~~a~kygV~kdeV~~~LrrLe~KGL 54 (59)
T 2xvc_A 12 ERELLDYIVNNGGFLDIEHFSKVYGVEKQEVVKLLEALKNKGL 54 (59)
T ss_dssp HHHHHHHHHHTTSEEEHHHHHHHHCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHcCCEEeHHHHHHHhCCCHHHHHHHHHHHHHCCC
Confidence 88999999954 3444445677899999999995
No 24
>1h7c_A Tubulin-specific chaperone A; protein folding, cofactor A; 1.8A {Homo sapiens} SCOP: a.7.5.1
Probab=28.59 E-value=2.9e+02 Score=24.83 Aligned_cols=28 Identities=18% Similarity=0.376 Sum_probs=23.2
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004367 493 KIDKTRAVVKDLHSRIKVAIHRIDSISK 520 (759)
Q Consensus 493 kIDKTRa~Vk~L~TrI~VaiqsvdsiS~ 520 (759)
.++.|+..|-++..||.-++..+..+-.
T Consensus 56 vl~Et~~mipd~~~Rl~~a~~~L~~~l~ 83 (108)
T 1h7c_A 56 ILQESRMMIPDCQRRLEAAYLDLQRILE 83 (108)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 4578888999999999999888887664
No 25
>3stq_A TSI2, putative uncharacterized protein; coiled-coil, toxin-antitoxin system, TSI2-TSE2, T6SS, toxin toxin; 2.28A {Pseudomonas aeruginosa}
Probab=26.95 E-value=67 Score=28.27 Aligned_cols=34 Identities=21% Similarity=0.381 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHhhhhhccchhhH---HHHHHHHH
Q 004367 508 IKVAIHRIDSISKRIEELRDKELQPQ---LEDLIEGL 541 (759)
Q Consensus 508 I~VaiqsvdsiS~~I~kLRDeEL~PQ---L~ELi~GL 541 (759)
++||||+|++-.+++..+-|++--|- |..|+-|+
T Consensus 33 LmvAIQcVaAei~~Lda~l~e~~ppna~elEqLLV~f 69 (102)
T 3stq_A 33 LMVAIQCVAARTRELDAQLQNDDPQNAAELEQLLVGY 69 (102)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHHHHHhccccccCCCcchhHHHhhhh
Confidence 47899999999999999999999998 55555554
No 26
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=25.78 E-value=3.1e+02 Score=27.24 Aligned_cols=68 Identities=12% Similarity=0.108 Sum_probs=43.7
Q ss_pred hhHHHHHHHHHHHHHHHhhhhcCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-ccchhhHHHH
Q 004367 466 ASEMIRREYDSKCRILRQLESKGVSSHKIDKTRAVVKDLHSRIKVAIHRIDSISKRIEELR-DKELQPQLED 536 (759)
Q Consensus 466 a~E~lR~~yeKKc~~Lr~qd~rGad~~kIDKTRa~Vk~L~TrI~VaiqsvdsiS~~I~kLR-DeEL~PQL~E 536 (759)
+..+++..|+||-++...+..+-. +...-+ +-.+-|.+|=.+--...+.+-.+|.+|. |.+-|+.|+.
T Consensus 54 ~~~~i~~~~ek~~kq~e~~~~i~~-S~~~~~--aR~~vL~ar~e~i~~v~~~a~~~L~~~~~d~~~Y~~lL~ 122 (233)
T 4efa_E 54 ETNNIDGNFKSKLKKAMLSQQITK-STIANK--MRLKVLSAREQSLDGIFEETKEKLSGIANNRDEYKPILQ 122 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 445677788888877766543321 112222 3335577777777777788888888884 7788887754
No 27
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster}
Probab=25.45 E-value=2.8e+02 Score=27.93 Aligned_cols=73 Identities=18% Similarity=0.282 Sum_probs=42.7
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhc--------CCCch-------hhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q 004367 465 KASEMIRREYDSKCRILRQLESK--------GVSSH-------KIDKTRAVVKDLHSRIKVAIHRIDSISKRIEELRDKE 529 (759)
Q Consensus 465 Ka~E~lR~~yeKKc~~Lr~qd~r--------Gad~~-------kIDKTRa~Vk~L~TrI~VaiqsvdsiS~~I~kLRDeE 529 (759)
+.-++.|..|++.|+..+....+ +.... +++++...+......+..+++..+.+-.. . ++
T Consensus 135 ~~l~kaKk~Y~~~c~e~~~a~~~~~~a~~~~~~s~k~~~K~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~---~--~~ 209 (290)
T 3i2w_A 135 AKVEKAKADYHSACKTERSATNQERNANADSSLSPDQVKKMHDRVQKTKDQVQKCREKYEQAIAEITKYNSV---Y--IE 209 (290)
T ss_dssp HHHHHHHHHHHHHHHTTTSCC--------------------CTTSSTTTTHHHHHHHHHHHHHHHHHHHHHH---H--HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH---H--HH
Confidence 45577889999999864433211 11111 24555556667777777777777766332 2 56
Q ss_pred hhhHHHHHHHHHH
Q 004367 530 LQPQLEDLIEGLS 542 (759)
Q Consensus 530 L~PQL~ELi~GL~ 542 (759)
.+|++++-+|-|.
T Consensus 210 ~~p~~~~~~Q~le 222 (290)
T 3i2w_A 210 DMTSVFEKCQTFE 222 (290)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6777776666543
No 28
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=22.04 E-value=7.7e+02 Score=26.59 Aligned_cols=56 Identities=13% Similarity=0.101 Sum_probs=40.8
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc--chhhHHHHHHHHHHHhHHHH
Q 004367 493 KIDKTRAVVKDLHSRIKVAIHRIDSISKRIEELRDK--ELQPQLEDLIEGLSRMWEVM 548 (759)
Q Consensus 493 kIDKTRa~Vk~L~TrI~VaiqsvdsiS~~I~kLRDe--EL~PQL~ELi~GL~rMWk~M 548 (759)
-+++.....+.++..+....+-++.++.+|++||.+ .|.|-|-++..-+..+=...
T Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (487)
T 3oja_A 415 IVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATL 472 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHH
Confidence 345555567777777778889999999999999884 57777777766666554433
No 29
>1qsd_A Protein (beta-tubulin binding post-chaperonin cofactor); four-helix-bundle, chaperone; 2.20A {Saccharomyces cerevisiae} SCOP: a.7.5.1
Probab=22.01 E-value=4.3e+02 Score=23.69 Aligned_cols=56 Identities=11% Similarity=0.151 Sum_probs=36.1
Q ss_pred HHHHHhhhhcCC-Cch-------hhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHH
Q 004367 478 CRILRQLESKGV-SSH-------KIDKTRAVVKDLHSRIKVAIHRIDSISKRIEELRDKELQPQLED 536 (759)
Q Consensus 478 c~~Lr~qd~rGa-d~~-------kIDKTRa~Vk~L~TrI~VaiqsvdsiS~~I~kLRDeEL~PQL~E 536 (759)
..++.++...|+ |.. .++.|+..|-+++.||.-++..+..+- ..+.+.|-|-.=-+
T Consensus 31 ~~riek~k~~~~~dey~iKkq~evl~Et~~mipd~~~Rl~~a~~~L~~~l---~~~~~~ee~~~Ake 94 (106)
T 1qsd_A 31 EAHVAKLKEDKSVDPYDLKKQEEVLDDTKRLLPTLYEKIREFKEDLEQFL---KTYQGTEDVSDARS 94 (106)
T ss_dssp HHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HTCCSSSCCHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH---HhccCcHHHHHHHH
Confidence 333444444455 544 457889999999999999988888766 45555544433333
No 30
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Probab=20.73 E-value=6.8e+02 Score=25.61 Aligned_cols=62 Identities=13% Similarity=0.257 Sum_probs=38.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHhhcCCCCcccccCCCCCCCCCCCCCCChHHHHHHHHHHhhccCChHHHHHHHHHHHHHHh
Q 004367 595 FTKWISAQKFYLQAINNWLVKCVSLPQKSSRRKRRVPAPPPLRNFGPPIYATCSVWLDLLDWLPSKELTDSIKSLASETS 674 (759)
Q Consensus 595 F~~wI~aQk~YV~aLngWL~~cl~~~~e~~~~~~~~~s~~p~r~~aPpIf~lC~~W~~aldrlp~k~v~~AIk~f~~~v~ 674 (759)
|..=...-+.|.+.|..|-+++..... ..|.+..+...|...+..+ +.+...-..|+..|.
T Consensus 43 ~keRa~iE~eYak~L~kLakk~~~~~~-----------------~~~~~gtl~~aw~~~~~e~--e~~a~~H~~~a~~L~ 103 (337)
T 2x3v_A 43 VQERAKIEKAYAQQLTDWAKRWRQLIE-----------------KGPQYGSLERAWGAMMTEA--DKVSELHQEVKNSLL 103 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HSSCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc-----------------CCCCCchHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 444456788999999999998753110 0123356888898777542 344555556666664
Q ss_pred H
Q 004367 675 H 675 (759)
Q Consensus 675 ~ 675 (759)
.
T Consensus 104 ~ 104 (337)
T 2x3v_A 104 N 104 (337)
T ss_dssp H
T ss_pred H
Confidence 4
Done!