BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004368
(758 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XE4|A Chain A, Structure Of Oligopeptidase B From Leishmania Major
Length = 751
Score = 509 bits (1311), Expect = e-144, Method: Compositional matrix adjust.
Identities = 293/724 (40%), Positives = 412/724 (56%), Gaps = 41/724 (5%)
Query: 51 SPPVAKKVEHKMELFGDV---------------RVDNYYWLRDDSRSDPEVLAYLKQEND 95
PP+A K H++ L G V R D Y+W+RDD R DP V+ +L +E
Sbjct: 32 QPPIAAKKPHRVTL-GYVEGEDRGPNPMNPPRYREDPYFWMRDDDRKDPAVIEHLNKEKV 90
Query: 96 YFESAMSGTKKIEDNMFAELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHN 155
YF++ + ++ D+++AE I ++D+SAP+ G Y YYTR ++GK Y +CR
Sbjct: 91 YFQARSADIAQLRDDIYAEHISHINEDDMSAPYVYGKYRYYTREVKGKPYKIYCR----- 145
Query: 156 NEAPPSVHDTMETGPDAPPEHLILDENVKAEGRGFYSVGCFQ-VSPDNKLVAYAEDTKGD 214
V E G D E +I+D N AEG+ F V + P++ LVA++ D G+
Sbjct: 146 ------VFTDKEPG-DVAAEEVIIDVNQVAEGKAFCDVMEVKPAPPEHDLVAFSVDMSGN 198
Query: 215 EIYTVYVIDI-ETGTPVGKPLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQ 272
E+YT+ I + + + G + W + +L Y+T DE LR +K W H + Q
Sbjct: 199 EVYTIEFKRISDPSQTIADKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQ 258
Query: 273 SNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEE---LRVLTPRV 329
S D+CLY E + ++S + + L I S+S T V LD+ K L ++ PR
Sbjct: 259 SEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPRE 318
Query: 330 VGVD-TAASHRGNHFFITRRSDELFNSELLACPVDNTSE-TTVLIPHRESVKLQDIQLFI 387
GV H +H I N +LL P S+ + VL+ H E V ++ I +
Sbjct: 319 KGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRS 378
Query: 388 DHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESV---FSSRIL 444
++L V R GL +I T + K+ G + V +P++++ ES +
Sbjct: 379 NYLVVAGRRAGLTRIWTMMADSQDGVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTF 438
Query: 445 RFHYSSLRTPPSVYDYDMDMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPICIV 504
R YSSL TP + +D K+ V GGFD NY ER++A+A D T+IP+ +V
Sbjct: 439 RMEYSSLATPNTWFDVSPQDHSRTAVKVREVGGGFDAANYKVERRFATAPDQTKIPLSVV 498
Query: 505 YRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWY 564
Y K+L + P +LYGYGSY + DP F+ L DRG IFAIA IRGG ELGR WY
Sbjct: 499 YHKDL-DMSQPQPCMLYGYGSYGLSMDPQFSIQHLPYCDRGMIFAIAHIRGGSELGRAWY 557
Query: 565 ENG-KFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAA 623
E G K+L K+NTF+DFIA AE+L+ T +L EGRSAGGLL+GAVLNMRPDLFK A
Sbjct: 558 EIGAKYLTKRNTFSDFIAAAEFLVNAKLTTPSQLACEGRSAGGLLMGAVLNMRPDLFKVA 617
Query: 624 VAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVT 683
+A VPFVDV+TTM DP+IPLTT EWEEWG+P + ++Y YM SYSP+DNV+AQ YP+I+V
Sbjct: 618 LAGVPFVDVMTTMCDPSIPLTTGEWEEWGNPNEYKYYDYMLSYSPMDNVRAQEYPNIMVQ 677
Query: 684 AGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFL 743
GL+DPRV Y EPAK+V+KLRE KTD+N +L ++ +GHFS R++ +E+A F+
Sbjct: 678 CGLHDPRVAYWEPAKWVSKLRECKTDNNEILLNIDMESGHFSAKDRYKFWKESAIQQAFV 737
Query: 744 MRAL 747
+ L
Sbjct: 738 CKHL 741
>pdb|3IUN|A Chain A, Appep_d622n Opened State
pdb|3IUQ|A Chain A, Appep_d622n+pp Closed State
pdb|3IUR|A Chain A, Appep_d266nx+h2h3 Opened State
Length = 693
Score = 239 bits (609), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 201/720 (27%), Positives = 327/720 (45%), Gaps = 79/720 (10%)
Query: 53 PVAKKVEHKMELFGDVRVDNYYWLRDDSRSDPEVLAYLKQENDYFESAMSGTKKIEDNMF 112
PV ++ E FG D Y WL DD RS PE A++K +N + ++ +
Sbjct: 13 PVTRQGEQVDHYFGQAVADPYRWLEDD-RS-PETEAWVKAQNAVTQDYLAQIP-YRAAIK 69
Query: 113 AELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGPDA 172
+L APFR+G Y+Y+ + + +Q+ L E P+
Sbjct: 70 EKLAASWNYAKEGAPFREGRYHYFFKN----DGLQNQNVLWRQQEGKPA----------- 114
Query: 173 PPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK 232
+ LD N + G ++ S D +++AY+ G + ++++D+E+ P+
Sbjct: 115 ---EVFLDPNTLSP-DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET 170
Query: 233 PLVGVTAS-VEWAGNEALVYITMDEILRPD-----------KAWLHKLEADQSNDICLY- 279
PL V S + W GNE Y + D +PD K + H+L Q +D ++
Sbjct: 171 PLKDVKFSGISWLGNEGFFYSSYD---KPDGSELSARTDQHKVYFHRLGTAQEDDRLVFG 227
Query: 280 -----HEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVG-VD 333
H + +G +E +FL I++ + + Y+ E +LT V G +D
Sbjct: 228 AIPAQHHR----YVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLT--VQGDLD 281
Query: 334 TAAS---HRGNHFFITRRSDELFNSELLACPVDNTSETTV--LIPHRESVKLQDIQLFID 388
S ++G+ ++ D N L+ N LIP R+ V
Sbjct: 282 ADVSLVDNKGSTLYLLTNRDAP-NRRLVTVDAANPGPAHWRDLIPERQQV---------- 330
Query: 389 HLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVE--FIDPVYSIDPSESVFSSRILRF 446
L V+ G L Y + A + GK V + + S+ L F
Sbjct: 331 -LTVHSGSGYL--FAEYMVDATARVEQFDYEGKRVREVALPGLGSVSGFNGKHDDPALYF 387
Query: 447 HYSSLRTPPSVYDYDMDMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPICIVYR 506
+ + PP++Y ++ G L + F +Y +E+++ + DGT++P+ I YR
Sbjct: 388 GFENYAQPPTLYRFEPKSGAISLYRASAAP--FKPEDYVSEQRFYQSKDGTRVPLIISYR 445
Query: 507 KNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYEN 566
K L KLDGS+P +LYGYG +++ P+F+ S + LD G ++A+A +RGGGE G+ W+
Sbjct: 446 KGL-KLDGSNPTILYGYGGFDVSLTPSFSVSVANWLDLGGVYAVANLRGGGEYGQAWHLA 504
Query: 567 GKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAA 626
G K+N F DFIA AEYL Y ++L I G S GGLL+GAV+ RPDL + A+ A
Sbjct: 505 GTQQNKQNVFDDFIAAAEYLKAEGYTRTDRLAIRGGSNGGLLVGAVMTQRPDLMRVALPA 564
Query: 627 VPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYF-YMKSYSPVDNVK-AQNYPHILVTA 684
V +D+L T T ++G E F Y+K YSP+ NV+ +YP +VT
Sbjct: 565 VGVLDMLRYH---TFTAGTGWAYDYGTSADSEAMFDYLKGYSPLHNVRPGVSYPSTMVTT 621
Query: 685 GLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLM 744
++ RV+ + KF A L+ + L + E AGH + + + + ++A Y F +
Sbjct: 622 ADHNDRVVPAHSFKFAATLQADNAGPHPQLIRIETNAGHGAGTPVAKLIEQSADIYAFTL 681
>pdb|3MUN|A Chain A, Appep_pepclose Closed State
pdb|3MUO|A Chain A, Appep_pepclose+pp Closed State
Length = 693
Score = 238 bits (606), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 202/728 (27%), Positives = 333/728 (45%), Gaps = 95/728 (13%)
Query: 53 PVAKKVEHKMELFGDVRVDNYYWLRDDSRSDPEVLAYLKQENDYFESAMSGTKKIEDNMF 112
PV ++ E FG D Y WL DD RS PE A++K +N + ++ +
Sbjct: 13 PVTRQGEQVDHYFGQAVADPYRWLEDD-RS-PETEAWVKAQNAVTQDYLAQIP-YRAAIK 69
Query: 113 AELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGPDA 172
+L APF G Y+Y+ + + +Q+ L E P+
Sbjct: 70 EKLAASWNYAKEGAPFWWGRYHYFFK----NDGLQNQNVLWRQQEGKPA----------- 114
Query: 173 PPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK 232
+ LD N + G ++ S D +++AY+ G + ++++D+E+ P+
Sbjct: 115 ---EVFLDPNTLSP-DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET 170
Query: 233 PLVGVTAS-VEWAGNEALVYITMDEILRPD-----------KAWLHKLEADQSNDICLY- 279
PL V S + W GNE Y + D +PD K + H+L Q +D ++
Sbjct: 171 PLKDVKFSGISWLGNEGFFYSSYD---KPDGSELSARTDQHKVYFHRLGTAQEDDRLVFG 227
Query: 280 -----HEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVG-VD 333
H + +G +E ++FL I++ + + Y+ E +LT V G +D
Sbjct: 228 AIPAQHHR----YVGATVTEDQRFLLISAANSTSGNRLYVKDLSQENAPLLT--VQGDLD 281
Query: 334 TAAS---HRGNHFFITRRSDELFNSELLACPVDNTSETTV--LIPHRE---SVKLQDIQL 385
S ++G+ ++ D N L+ N LIP R+ +V L
Sbjct: 282 ADVSLVDNKGSTLYLLTNRDAP-NRRLVTVDAANPGPAHWRDLIPERQQVLTVHSGSGYL 340
Query: 386 FIDHLA-------VYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESV 438
F +++ ++ EG +++ LP +G + G Y DP+
Sbjct: 341 FAEYMVDATARVEQFDYEG--KRVREVALPGLGS-VSGFNG----------YWWDPA--- 384
Query: 439 FSSRILRFHYSSLRTPPSVYDYDMDMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQ 498
L F + + PP++Y ++ G L + F +Y +E+++ + DGT+
Sbjct: 385 -----LYFGFENYAQPPTLYRFEPKSGAISLYRASAAP--FKPEDYVSEQRFYQSKDGTR 437
Query: 499 IPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGE 558
+P+ I YRK L KLDGS+P +LYGYG +++ P+F+ S + LD G ++A+A +RGGGE
Sbjct: 438 VPLIISYRKGL-KLDGSNPTILYGYGGFDVSLTPSFSVSVANWLDLGGVYAVANLRGGGE 496
Query: 559 LGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPD 618
G+ W+ G K+N F DFIA AEYL Y ++L I G S GGLL+GAV+ RPD
Sbjct: 497 YGQAWHLAGTQQNKQNVFDDFIAAAEYLKAEGYTRTDRLAIRGGSNGGLLVGAVMTQRPD 556
Query: 619 LFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYF-YMKSYSPVDNVK-AQN 676
L + A+ AV +D+L T T ++G E F Y+K YSP+ NV+ +
Sbjct: 557 LMRVALPAVGVLDMLRYH---TFTAGTGWAYDYGTSADSEAMFDYLKGYSPLHNVRPGVS 613
Query: 677 YPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREA 736
YP +VT +D RV+ + KF A L+ + L + E AGH + + + + ++
Sbjct: 614 YPSTMVTTADHDDRVVPAHSFKFAATLQADNAGPHPQLIRIETNAGHGAGTPVAKLIEQS 673
Query: 737 AFTYTFLM 744
A Y F +
Sbjct: 674 ADIYAFTL 681
>pdb|3IVM|A Chain A, Appep_wt+pp Closed State
Length = 693
Score = 236 bits (601), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 202/720 (28%), Positives = 323/720 (44%), Gaps = 79/720 (10%)
Query: 53 PVAKKVEHKMELFGDVRVDNYYWLRDDSRSDPEVLAYLKQENDYFESAMSGTKKIEDNMF 112
PV ++ E FG D Y WL DD RS PE A++K +N + ++ +
Sbjct: 13 PVTRQGEQVDHYFGQAVADPYRWLEDD-RS-PETEAWVKAQNAVTQDYLAQIP-YRAAIK 69
Query: 113 AELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGPDA 172
+L APFR+G Y+Y+ + + +Q+ L E P+
Sbjct: 70 EKLAASWNYAKEGAPFREGRYHYFFKN----DGLQNQNVLWRQQEGKPA----------- 114
Query: 173 PPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK 232
+ LD N + G ++ S D +++AY+ G + +++ D+E+ P+
Sbjct: 115 ---EVFLDPNTLSP-DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLXDVESKQPLET 170
Query: 233 PLVGVTAS-VEWAGNEALVYITMDEILRPD-----------KAWLHKLEADQSNDICLY- 279
PL V S + W GNE Y + D +PD K + H+L Q +D ++
Sbjct: 171 PLKDVKFSGISWLGNEGFFYSSYD---KPDGSELSARTDQHKVYFHRLGTAQEDDRLVFG 227
Query: 280 -----HEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVG-VD 333
H + +G +E +FL I++ + + Y+ E +LT V G +D
Sbjct: 228 AIPAQHHR----YVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLT--VQGDLD 281
Query: 334 TAAS---HRGNHFFITRRSDELFNSELLACPVDNTSETTV--LIPHRESVKLQDIQLFID 388
S ++G+ ++ D N L+ N LIP R+ V
Sbjct: 282 ADVSLVDNKGSTLYLLTNRDAP-NRRLVTVDAANPGPAHWRDLIPERQQV---------- 330
Query: 389 HLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVE--FIDPVYSIDPSESVFSSRILRF 446
L V+ G L Y + A + GK V + + S+ L F
Sbjct: 331 -LTVHSGSGYL--FAEYXVDATARVEQFDYEGKRVREVALPGLGSVSGFNGKHDDPALYF 387
Query: 447 HYSSLRTPPSVYDYDMDMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPICIVYR 506
+ + PP++Y ++ G L + F +Y +E+++ + DGT++P+ I YR
Sbjct: 388 GFENYAQPPTLYRFEPKSGAISLYRASAAP--FKPEDYVSEQRFYQSKDGTRVPLIISYR 445
Query: 507 KNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYEN 566
K L KLDGS+P +LYGYG +++ P+F+ S + LD G ++A+A +RGGGE G+ W+
Sbjct: 446 KGL-KLDGSNPTILYGYGGFDVSLTPSFSVSVANWLDLGGVYAVANLRGGGEYGQAWHLA 504
Query: 567 GKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAA 626
G K+N F DFIA AEYL Y ++L I G S GGLL+GAV RPDL + A+ A
Sbjct: 505 GTQQNKQNVFDDFIAAAEYLKAEGYTRTDRLAIRGGSNGGLLVGAVXTQRPDLXRVALPA 564
Query: 627 VPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYF-YMKSYSPVDNVK-AQNYPHILVTA 684
V +D L T T ++G E F Y+K YSP+ NV+ +YP VT
Sbjct: 565 VGVLDXLRYH---TFTAGTGWAYDYGTSADSEAXFDYLKGYSPLHNVRPGVSYPSTXVTT 621
Query: 685 GLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLM 744
+D RV+ + KF A L+ + L + E AGH + + + + ++A Y F +
Sbjct: 622 ADHDDRVVPAHSFKFAATLQADNAGPHPQLIRIETNAGHGAGTPVAKLIEQSADIYAFTL 681
>pdb|3IUJ|A Chain A, Appep_wt2 Opened State
pdb|3IUL|A Chain A, Appep_wt1 Opened State
pdb|3IUM|A Chain A, Appep_wtx Opened State
Length = 693
Score = 235 bits (600), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 202/720 (28%), Positives = 323/720 (44%), Gaps = 79/720 (10%)
Query: 53 PVAKKVEHKMELFGDVRVDNYYWLRDDSRSDPEVLAYLKQENDYFESAMSGTKKIEDNMF 112
PV ++ E FG D Y WL DD RS PE A++K +N + ++ +
Sbjct: 13 PVTRQGEQVDHYFGQAVADPYRWLEDD-RS-PETEAWVKAQNAVTQDYLAQIP-YRAAIK 69
Query: 113 AELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGPDA 172
+L APFR+G Y+Y+ + + +Q+ L E P+
Sbjct: 70 EKLAASWNYAKEGAPFREGRYHYFFKN----DGLQNQNVLWRQQEGKPA----------- 114
Query: 173 PPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK 232
+ LD N + G ++ S D +++AY+ G + +++ D+E+ P+
Sbjct: 115 ---EVFLDPNTLSP-DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLXDVESKQPLET 170
Query: 233 PLVGVTAS-VEWAGNEALVYITMDEILRPD-----------KAWLHKLEADQSNDICLY- 279
PL V S + W GNE Y + D +PD K + H+L Q +D ++
Sbjct: 171 PLKDVKFSGISWLGNEGFFYSSYD---KPDGSELSARTDQHKVYFHRLGTAQEDDRLVFG 227
Query: 280 -----HEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVG-VD 333
H + +G +E +FL I++ + + Y+ E +LT V G +D
Sbjct: 228 AIPAQHHR----YVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLT--VQGDLD 281
Query: 334 TAAS---HRGNHFFITRRSDELFNSELLACPVDNTSETTV--LIPHRESVKLQDIQLFID 388
S ++G+ ++ D N L+ N LIP R+ V
Sbjct: 282 ADVSLVDNKGSTLYLLTNRDAP-NRRLVTVDAANPGPAHWRDLIPERQQV---------- 330
Query: 389 HLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVE--FIDPVYSIDPSESVFSSRILRF 446
L V+ G L Y + A + GK V + + S+ L F
Sbjct: 331 -LTVHSGSGYL--FAEYXVDATARVEQFDYEGKRVREVALPGLGSVSGFNGKHDDPALYF 387
Query: 447 HYSSLRTPPSVYDYDMDMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPICIVYR 506
+ + PP++Y ++ G L + F +Y +E+++ + DGT++P+ I YR
Sbjct: 388 GFENYAQPPTLYRFEPKSGAISLYRASAAP--FKPEDYVSEQRFYQSKDGTRVPLIISYR 445
Query: 507 KNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYEN 566
K L KLDGS+P +LYGYG +++ P+F+ S + LD G ++A+A +RGGGE G+ W+
Sbjct: 446 KGL-KLDGSNPTILYGYGGFDVSLTPSFSVSVANWLDLGGVYAVANLRGGGEYGQAWHLA 504
Query: 567 GKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAA 626
G K+N F DFIA AEYL Y ++L I G S GGLL+GAV RPDL + A+ A
Sbjct: 505 GTQQNKQNVFDDFIAAAEYLKAEGYTRTDRLAIRGGSNGGLLVGAVXTQRPDLXRVALPA 564
Query: 627 VPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYF-YMKSYSPVDNVK-AQNYPHILVTA 684
V +D L T T ++G E F Y+K YSP+ NV+ +YP VT
Sbjct: 565 VGVLDXLRYH---TFTAGTGWAYDYGTSADSEAXFDYLKGYSPLHNVRPGVSYPSTXVTT 621
Query: 685 GLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLM 744
+D RV+ + KF A L+ + L + E AGH + + + + ++A Y F +
Sbjct: 622 ADHDDRVVPAHSFKFAATLQADNAGPHPQLIRIETNAGHGAGTPVAKLIEQSADIYAFTL 681
>pdb|2BKL|A Chain A, Structural And Mechanistic Analysis Of Two Prolyl
Endopeptidases: Role Of Inter-Domain Dynamics In
Catalysis And Specificity
pdb|2BKL|B Chain B, Structural And Mechanistic Analysis Of Two Prolyl
Endopeptidases: Role Of Inter-Domain Dynamics In
Catalysis And Specificity
Length = 695
Score = 216 bits (550), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 195/726 (26%), Positives = 337/726 (46%), Gaps = 72/726 (9%)
Query: 55 AKKVEHKMELFGDVRV-DNYYWLRDDSRSDPEVLAYLKQENDYFESAMSGTKKIEDNMFA 113
A + E ++ V+V D Y WL D+ PEV ++ +N + A++ E + A
Sbjct: 5 ATRAEQVVDTLHGVQVADPYRWLEDEKA--PEVQTWMTAQNAHAREALAKFPGRE-ALAA 61
Query: 114 ELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGPDAP 173
K + VS P R+ ++Y RT + KE + +++ + E+G
Sbjct: 62 RFKELFYTDSVSTPSRRNGRFFYVRTHKDKE-----KAILYWRQG--------ESGQ--- 105
Query: 174 PEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP 233
E ++LD N ++ G S+G + VS D K VA+A+ + ++VID+++G
Sbjct: 106 -EKVLLDPNGWSKD-GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD 163
Query: 234 LV--GVTASVEWAGNEALVY---------ITMDEILRPDKAWL--HKLEADQSNDICLYH 280
++ G A+ +W + Y I +DE RP + H L + S D + H
Sbjct: 164 VIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDE--RPGYTTIRYHTLGTEPSKDTVV-H 220
Query: 281 EKDDIYSLGLQASESK--KFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTAASH 338
E+ + LQ+ S+ K+LF+ + Y ++ R+L + VG
Sbjct: 221 ERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLV-KGVGAKYEVHA 279
Query: 339 RGNHFFITRRSDELFNSELLACPVDNTSET-TVLIPHRESVKLQDIQLFIDHLAVYEREG 397
+ F++ P + ++P S L + + HL++ +
Sbjct: 280 WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIVGGHLSLEYLKD 339
Query: 398 GLQKITTYRLPAVGEPLKSLQ--GGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPP 455
++ L G+P++++Q G + + + +D + VF+S TP
Sbjct: 340 ATSEVRVATLK--GKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTS---------FTTPR 388
Query: 456 SVYDYDMDMGISVL-KKIETVLGGFDTNNYFTERKWASASDGTQIPICIVYRKNLVKLDG 514
+Y + G S L K++ + + Y E+ + ++ DGT++P+ +V+RK+L K DG
Sbjct: 389 QIYKTSVSTGKSELWAKVDVPM---NPEQYQVEQVFYASKDGTKVPMFVVHRKDL-KRDG 444
Query: 515 SDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKN 574
+ P LLYGYG + + + F SS L LD G ++A+A +RGGGE G+ W++ G+ KK+N
Sbjct: 445 NAPTLLYGYGGFNVNMEANFRSSILPWLDAGGVYAVANLRGGGEYGKAWHDAGRLDKKQN 504
Query: 575 TFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLT 634
F DF A AEYL++ Y ++L I G S GGLL+GA + RP+L+ A V AVP +D++
Sbjct: 505 VFDDFHAAAEYLVQQKYTQPKRLAIYGGSNGGLLVGAAMTQRPELYGAVVCAVPLLDMVR 564
Query: 635 TMLDPT----IPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQ-NYPHILVTAGLNDP 689
L + IP E+G K E + + +YSP +V+ YP +L+ A +D
Sbjct: 565 YHLFGSGRTWIP-------EYGTAEKPEDFKTLHAYSPYHHVRPDVRYPALLMMAADHDD 617
Query: 690 RVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSM 749
RV KFVA ++ + L + E AGH + + + Y+FL + L +
Sbjct: 618 RVDPMHARKFVAAVQNSPGNPATALLRIEANAGHGGADQVAKAIESSVDLYSFLFQVLDV 677
Query: 750 LPSVGS 755
+ G
Sbjct: 678 QGAQGG 683
>pdb|1YR2|A Chain A, Structural And Mechanistic Analysis Of Two Prolyl
Endopeptidases: Role Of Inter-Domain Dynamics In
Catalysis And Specificity
Length = 741
Score = 214 bits (545), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 202/734 (27%), Positives = 323/734 (44%), Gaps = 80/734 (10%)
Query: 49 LPSPPVAKKVEHKMELFGDVRVDNYYWLRDDSRSDPEVLAYLKQENDYFESAMSGTKKIE 108
LP P + +V + FG+ D + WL D R+D +V A+++ ++ Y + + K++
Sbjct: 37 LPPYPASPQVPLVEDHFGEKVSDPWRWLEADVRTDAKVAAWVQAQSAYTAAYL---KQLP 93
Query: 109 DNMFAE--LKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTM 166
+ E +K I E P R+G+ +Y+ + + L+ +AP
Sbjct: 94 ERAALEKRMKALIDYERFGLPQRRGASVFYSWN---SGLMNQSQLLVRPADAPVGTKG-- 148
Query: 167 ETGPDAPPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIET 226
++LD N A+ G ++ + S D +L+AY+ G + TV + +
Sbjct: 149 ---------RVLLDPNTWAK-DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVAD 198
Query: 227 GTPVGKPLVGVTAS-VEWAGNEALVYITMDE---------ILRPDKAWLHKLEADQSNDI 276
G P+ L V S + W GN+AL+Y E + WLH+L QS D
Sbjct: 199 GKPLADELKWVKFSGLAWLGNDALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQ 258
Query: 277 CLYHEKD-DIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTA 335
++ + G S +++ I S S+ T V + V++ +T +G TA
Sbjct: 259 PVFATPELPKRGHGASVSSDGRWVVITS-SEGTDPVNTVHVAR------VTNGKIGPVTA 311
Query: 336 --ASHRGNHFFITRRSDELFNSELLACPV---------DNTSETTVLIPHR----ESVKL 380
+ F+ D+L+ P+ +T ++P ESV +
Sbjct: 312 LIPDLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGI 371
Query: 381 QDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFS 440
+LF ++ ++ + L SL G S + S P +
Sbjct: 372 AGNRLFASYI-----HDAKSQVLAFDLDGKPAGAVSLPGIGSASGL----SGRPGD---- 418
Query: 441 SRILRFHYSSLRTPPSVYDYDMDMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIP 500
R +SS P +V +D + E V FD ++ E+ + + DGT++P
Sbjct: 419 -RHAYLSFSSFTQPATVLA--LDPATAKTTPWEPVHLTFDPADFRVEQVFYPSKDGTKVP 475
Query: 501 ICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELG 560
+ IV RK+ G P LLYGYG + + P F++ ++ +D G FA+A +RGGGE G
Sbjct: 476 MFIVRRKDA---KGPLPTLLYGYGGFNVALTPWFSAGFMTWIDSGGAFALANLRGGGEYG 532
Query: 561 RQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLF 620
W++ G+ KK+N F DFIA E+LI N + L IEG S GGLLIGAV N RPDLF
Sbjct: 533 DAWHDAGRRDKKQNVFDDFIAAGEWLIANGVTPRHGLAIEGGSNGGLLIGAVTNQRPDLF 592
Query: 621 KAAVAAVPFVDVLTTMLDPTIPLTTAEW--EEWGDPWKEEFYFYMKSYSPVDNVKAQ-NY 677
AA AV +D+L D T + +++G P KE + ++ YSP NV++ +Y
Sbjct: 593 AAASPAVGVMDML--RFD---QFTAGRYWVDDYGYPEKEADWRVLRRYSPYHNVRSGVDY 647
Query: 678 PHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAA 737
P ILVT D RV+ K+ A L+ L + E AGH S +++ E A
Sbjct: 648 PAILVTTADTDDRVVPGHSFKYTAALQTAAIGPKPHLIRIETRAGHGSGKPIDKQIEETA 707
Query: 738 FTYTFLMRALSMLP 751
FL + P
Sbjct: 708 DVQAFLAHFTGLTP 721
>pdb|3DDU|A Chain A, Prolyl Oligopeptidase With Gsk552
Length = 709
Score = 169 bits (427), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 106/317 (33%), Positives = 168/317 (52%), Gaps = 19/317 (5%)
Query: 446 FHYSSLRTPPSVYDYDM---DMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPIC 502
+ ++S +P +Y D+ ++ V + E + G D ++Y T + + + DGT+IP+
Sbjct: 395 YQFTSFLSPGIIYHCDLTKEELEPRVFR--EVTVKGIDASDYQTVQIFYPSKDGTKIPMF 452
Query: 503 IVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDR-GFIFAIAQIRGGGELGR 561
IV++K +KLDGS P LYGYG + I P ++ SRL + G I A+A IRGGGE G
Sbjct: 453 IVHKKG-IKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGILAVANIRGGGEYGE 511
Query: 562 QWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFK 621
W++ G K+N F DF AEYLIK Y + ++L I G S GGLL+ A N RPDLF
Sbjct: 512 TWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVAACANQRPDLFG 571
Query: 622 AAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQ-----N 676
+A V +D+L + A ++G ++ + ++ YSP+ NVK
Sbjct: 572 CVIAQVGVMDMLKFH---KYTIGHAWTTDYGCSDSKQHFEWLVKYSPLHNVKLPEADDIQ 628
Query: 677 YPHILVTAGLNDPRVMYSEPAKFVAKLREM----KTDDNILLFKCELGAGHFSKSGRFER 732
YP +L+ +D RV+ KF+A L+ + + +N LL + AGH + +
Sbjct: 629 YPSMLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQNNPLLIHVDTKAGHGAGKPTAKV 688
Query: 733 LREAAFTYTFLMRALSM 749
+ E + + F+ R L++
Sbjct: 689 IEEVSDMFAFIARCLNV 705
>pdb|1QFM|A Chain A, Prolyl Oligopeptidase From Porcine Muscle
Length = 710
Score = 167 bits (424), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 104/317 (32%), Positives = 167/317 (52%), Gaps = 19/317 (5%)
Query: 446 FHYSSLRTPPSVYDYDM---DMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPIC 502
+ ++S +P +Y D+ ++ V + E + G D ++Y T + + + DGT+IP+
Sbjct: 396 YQFTSFLSPGIIYHCDLTKEELEPRVFR--EVTVKGIDASDYQTVQIFYPSKDGTKIPMF 453
Query: 503 IVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDR-GFIFAIAQIRGGGELGR 561
IV++K +KLDGS P LYGYG + I P ++ SRL + G + A+A IRGGGE G
Sbjct: 454 IVHKKG-IKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGE 512
Query: 562 QWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFK 621
W++ G K+N F DF AEYLIK Y + ++L I G S GGLL+ N RPDLF
Sbjct: 513 TWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFG 572
Query: 622 AAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQ-----N 676
+A V +D+L + A ++G ++ + ++ YSP+ NVK
Sbjct: 573 CVIAQVGVMDMLKFH---KYTIGHAWTTDYGXSDSKQHFEWLIKYSPLHNVKLPEADDIQ 629
Query: 677 YPHILVTAGLNDPRVMYSEPAKFVAKLREM----KTDDNILLFKCELGAGHFSKSGRFER 732
YP +L+ +D RV+ KF+A L+ + + +N LL + AGH + +
Sbjct: 630 YPSMLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQNNPLLIHVDTKAGHGAGKPTAKV 689
Query: 733 LREAAFTYTFLMRALSM 749
+ E + + F+ R L++
Sbjct: 690 IEEVSDMFAFIARCLNI 706
>pdb|1QFS|A Chain A, Prolyl Oligopeptidase From Porcine Muscle With Covalently
Bound Inhibitor Z-Pro-Prolinal
pdb|1H2W|A Chain A, Prolyl Oligopeptidase From Porcine Brain
pdb|3EQ7|A Chain A, Prolyl Oligopeptidase Complexed With
R-Pro-(Decarboxy-Pro)-Type Inhibitors
pdb|3EQ8|A Chain A, Prolyl Oligopeptidase Complexed With
R-Pro-(Decarboxy-Pro)-Type Inhibitors
pdb|3EQ9|A Chain A, Prolyl Oligopeptidase Complexed With
R-Pro-(Decarboxy-Pro)-Type Inhibitors
pdb|2XDW|A Chain A, Inhibition Of Prolyl Oligopeptidase With A Synthetic
Unnatural Dipeptide
pdb|4AMY|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A Covalently
Bound Inhibitor Ic-1
pdb|4AMZ|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A Covalently
Bound Inhibitor Ic-2
pdb|4AN0|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A Covalently
Bound Inhibitor Ic-3
pdb|4AN1|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A Covalently
Bound Inhibitor Ic-4
Length = 710
Score = 167 bits (422), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 104/317 (32%), Positives = 167/317 (52%), Gaps = 19/317 (5%)
Query: 446 FHYSSLRTPPSVYDYDM---DMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPIC 502
+ ++S +P +Y D+ ++ V + E + G D ++Y T + + + DGT+IP+
Sbjct: 396 YQFTSFLSPGIIYHCDLTKEELEPRVFR--EVTVKGIDASDYQTVQIFYPSKDGTKIPMF 453
Query: 503 IVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDR-GFIFAIAQIRGGGELGR 561
IV++K +KLDGS P LYGYG + I P ++ SRL + G + A+A IRGGGE G
Sbjct: 454 IVHKKG-IKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGE 512
Query: 562 QWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFK 621
W++ G K+N F DF AEYLIK Y + ++L I G S GGLL+ N RPDLF
Sbjct: 513 TWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFG 572
Query: 622 AAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQ-----N 676
+A V +D+L + A ++G ++ + ++ YSP+ NVK
Sbjct: 573 CVIAQVGVMDMLKFH---KYTIGHAWTTDYGCSDSKQHFEWLIKYSPLHNVKLPEADDIQ 629
Query: 677 YPHILVTAGLNDPRVMYSEPAKFVAKLREM----KTDDNILLFKCELGAGHFSKSGRFER 732
YP +L+ +D RV+ KF+A L+ + + +N LL + AGH + +
Sbjct: 630 YPSMLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQNNPLLIHVDTKAGHGAGKPTAKV 689
Query: 733 LREAAFTYTFLMRALSM 749
+ E + + F+ R L++
Sbjct: 690 IEEVSDMFAFIARCLNI 706
>pdb|1VZ2|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Y73c/v427c/c255t
Mutant
Length = 710
Score = 166 bits (420), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 104/317 (32%), Positives = 166/317 (52%), Gaps = 19/317 (5%)
Query: 446 FHYSSLRTPPSVYDYDM---DMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPIC 502
+ ++S +P +Y D+ ++ V + E G D ++Y T + + + DGT+IP+
Sbjct: 396 YQFTSFLSPGIIYHCDLTKEELEPRVFR--EVTCKGIDASDYQTVQIFYPSKDGTKIPMF 453
Query: 503 IVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDR-GFIFAIAQIRGGGELGR 561
IV++K +KLDGS P LYGYG + I P ++ SRL + G + A+A IRGGGE G
Sbjct: 454 IVHKKG-IKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGE 512
Query: 562 QWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFK 621
W++ G K+N F DF AEYLIK Y + ++L I G S GGLL+ N RPDLF
Sbjct: 513 TWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFG 572
Query: 622 AAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQ-----N 676
+A V +D+L + A ++G ++ + ++ YSP+ NVK
Sbjct: 573 CVIAQVGVMDMLKFH---KYTIGHAWTTDYGCSDSKQHFEWLIKYSPLHNVKLPEADDIQ 629
Query: 677 YPHILVTAGLNDPRVMYSEPAKFVAKLREM----KTDDNILLFKCELGAGHFSKSGRFER 732
YP +L+ +D RV+ KF+A L+ + + +N LL + AGH + +
Sbjct: 630 YPSMLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQNNPLLIHVDTKAGHGAGKPTAKV 689
Query: 733 LREAAFTYTFLMRALSM 749
+ E + + F+ R L++
Sbjct: 690 IEEVSDMFAFIARCLNI 706
>pdb|1VZ3|A Chain A, Prolyl Oligopeptidase From Porcine Brain, T597c Mutant
Length = 710
Score = 166 bits (419), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 104/317 (32%), Positives = 167/317 (52%), Gaps = 19/317 (5%)
Query: 446 FHYSSLRTPPSVYDYDM---DMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPIC 502
+ ++S +P +Y D+ ++ V + E + G D ++Y T + + + DGT+IP+
Sbjct: 396 YQFTSFLSPGIIYHCDLTKEELEPRVFR--EVTVKGIDASDYQTVQIFYPSKDGTKIPMF 453
Query: 503 IVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDR-GFIFAIAQIRGGGELGR 561
IV++K +KLDGS P LYGYG + I P ++ SRL + G + A+A IRGGGE G
Sbjct: 454 IVHKKG-IKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGE 512
Query: 562 QWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFK 621
W++ G K+N F DF AEYLIK Y + ++L I G S GGLL+ N RPDLF
Sbjct: 513 TWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFG 572
Query: 622 AAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQ-----N 676
+A V +D+L + A ++G ++ + ++ YSP+ NVK
Sbjct: 573 CVIAQVGVMDMLKFH---KYTIGHAWTCDYGCSDSKQHFEWLIKYSPLHNVKLPEADDIQ 629
Query: 677 YPHILVTAGLNDPRVMYSEPAKFVAKLREM----KTDDNILLFKCELGAGHFSKSGRFER 732
YP +L+ +D RV+ KF+A L+ + + +N LL + AGH + +
Sbjct: 630 YPSMLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQNNPLLIHVDTKAGHGAGKPTAKV 689
Query: 733 LREAAFTYTFLMRALSM 749
+ E + + F+ R L++
Sbjct: 690 IEEVSDMFAFIARCLNI 706
>pdb|1E8M|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Mutant,
Complexed With Inhibitor
pdb|1E8N|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Mutant,
Complexed With Peptide
pdb|1UOO|A Chain A, Prolyl Oligopeptidase From Porcine Brain, S554a Mutant
With Bound Peptide Ligand Gly-Phe-Arg-Pro
pdb|1UOP|A Chain A, Prolyl Oligopeptidase From Porcine Brain, S554a Mutant
With Bound Peptide Ligand Gly-Phe-Glu-Pro
pdb|1UOQ|A Chain A, Prolyl Oligopeptidase From Porcine Brain, S554a Mutant
With Bound Peptide Ligand Glu-Phe-Ser-Pro
pdb|1H2Z|A Chain A, Prolyl Oligopeptidase From Porcine Brain, S554a Mutant
With Bound Peptide Ligand Suc-Gly-Pro
Length = 710
Score = 166 bits (419), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 103/317 (32%), Positives = 167/317 (52%), Gaps = 19/317 (5%)
Query: 446 FHYSSLRTPPSVYDYDM---DMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPIC 502
+ ++S +P +Y D+ ++ V + E + G D ++Y T + + + DGT+IP+
Sbjct: 396 YQFTSFLSPGIIYHCDLTKEELEPRVFR--EVTVKGIDASDYQTVQIFYPSKDGTKIPMF 453
Query: 503 IVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDR-GFIFAIAQIRGGGELGR 561
IV++K +KLDGS P LYGYG + I P ++ SRL + G + A+A IRGGGE G
Sbjct: 454 IVHKKG-IKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGE 512
Query: 562 QWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFK 621
W++ G K+N F DF AEYLIK Y + ++L I G + GGLL+ N RPDLF
Sbjct: 513 TWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGANGGLLVATCANQRPDLFG 572
Query: 622 AAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQ-----N 676
+A V +D+L + A ++G ++ + ++ YSP+ NVK
Sbjct: 573 CVIAQVGVMDMLKFH---KYTIGHAWTTDYGCSDSKQHFEWLIKYSPLHNVKLPEADDIQ 629
Query: 677 YPHILVTAGLNDPRVMYSEPAKFVAKLREM----KTDDNILLFKCELGAGHFSKSGRFER 732
YP +L+ +D RV+ KF+A L+ + + +N LL + AGH + +
Sbjct: 630 YPSMLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQNNPLLIHVDTKAGHGAGKPTAKV 689
Query: 733 LREAAFTYTFLMRALSM 749
+ E + + F+ R L++
Sbjct: 690 IEEVSDMFAFIARCLNI 706
>pdb|1H2X|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Y473f Mutant
pdb|1H2Y|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Y473f Mutant
With Covalently Bound Inhibitor Z-Pro-Prolinal
Length = 710
Score = 165 bits (418), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 103/317 (32%), Positives = 167/317 (52%), Gaps = 19/317 (5%)
Query: 446 FHYSSLRTPPSVYDYDM---DMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPIC 502
+ ++S +P +Y D+ ++ V + E + G D ++Y T + + + DGT+IP+
Sbjct: 396 YQFTSFLSPGIIYHCDLTKEELEPRVFR--EVTVKGIDASDYQTVQIFYPSKDGTKIPMF 453
Query: 503 IVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDR-GFIFAIAQIRGGGELGR 561
IV++K +KLDGS P LYG+G + I P ++ SRL + G + A+A IRGGGE G
Sbjct: 454 IVHKKG-IKLDGSHPAFLYGFGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGE 512
Query: 562 QWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFK 621
W++ G K+N F DF AEYLIK Y + ++L I G S GGLL+ N RPDLF
Sbjct: 513 TWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFG 572
Query: 622 AAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQ-----N 676
+A V +D+L + A ++G ++ + ++ YSP+ NVK
Sbjct: 573 CVIAQVGVMDMLKFH---KYTIGHAWTTDYGCSDSKQHFEWLIKYSPLHNVKLPEADDIQ 629
Query: 677 YPHILVTAGLNDPRVMYSEPAKFVAKLREM----KTDDNILLFKCELGAGHFSKSGRFER 732
YP +L+ +D RV+ KF+A L+ + + +N LL + AGH + +
Sbjct: 630 YPSMLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQNNPLLIHVDTKAGHGAGKPTAKV 689
Query: 733 LREAAFTYTFLMRALSM 749
+ E + + F+ R L++
Sbjct: 690 IEEVSDMFAFIARCLNI 706
>pdb|1E5T|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Mutant
Length = 710
Score = 165 bits (417), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 104/315 (33%), Positives = 166/315 (52%), Gaps = 19/315 (6%)
Query: 448 YSSLRTPPSVYDYDM---DMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPICIV 504
++S +P +Y D+ ++ V + E + G D ++Y T + + + DGT+IP+ IV
Sbjct: 398 FTSFLSPGIIYHCDLTKEELEPRVFR--EVTVKGIDASDYQTVQIFYPSKDGTKIPMFIV 455
Query: 505 YRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDR-GFIFAIAQIRGGGELGRQW 563
++K +KLDGS P LYGYG + I P ++ SRL + G + A+A IRGGGE G W
Sbjct: 456 HKKG-IKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETW 514
Query: 564 YENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAA 623
++ G K+N F DF AEYLIK Y + ++L I G S GGLL+ N RPDLF
Sbjct: 515 HKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCV 574
Query: 624 VAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQ-----NYP 678
+A V +D+L + A ++G ++ + ++ YSP+ NVK YP
Sbjct: 575 IAQVGVMDMLKFH---KYTIGHAWTTDYGCSDSKQHFEWLIKYSPLHNVKLPEADDIQYP 631
Query: 679 HILVTAGLNDPRVMYSEPAKFVAKLREM----KTDDNILLFKCELGAGHFSKSGRFERLR 734
+L+ +D RV+ KF+A L+ + + +N LL + AGH + + +
Sbjct: 632 SMLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQNNPLLIHVDTKAGHGAGMPTAKVIE 691
Query: 735 EAAFTYTFLMRALSM 749
E + + F+ R L++
Sbjct: 692 EVSDMFAFIARCLNI 706
>pdb|1O6G|A Chain A, Prolyl Oligopeptidase From Porcine Brain, D641n Mutant
With Bound Peptide Ligand Suc-Gly-Pro
Length = 710
Score = 165 bits (417), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 103/317 (32%), Positives = 167/317 (52%), Gaps = 19/317 (5%)
Query: 446 FHYSSLRTPPSVYDYDM---DMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPIC 502
+ ++S +P +Y D+ ++ V + E + G D ++Y T + + + DGT+IP+
Sbjct: 396 YQFTSFLSPGIIYHCDLTKEELEPRVFR--EVTVKGIDASDYQTVQIFYPSKDGTKIPMF 453
Query: 503 IVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDR-GFIFAIAQIRGGGELGR 561
IV++K +KLDGS P LYGYG + I P ++ SRL + G + A+A IRGGGE G
Sbjct: 454 IVHKKG-IKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGE 512
Query: 562 QWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFK 621
W++ G K+N F DF AEYLIK Y + ++L I G S GGLL+ N RPDLF
Sbjct: 513 TWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFG 572
Query: 622 AAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQ-----N 676
+A V +D+L + A ++G ++ + ++ YSP+ NVK
Sbjct: 573 CVIAQVGVMDMLKFH---KYTIGHAWTTDYGCSDSKQHFEWLIKYSPLHNVKLPEADDIQ 629
Query: 677 YPHILVTAGLNDPRVMYSEPAKFVAKLREM----KTDDNILLFKCELGAGHFSKSGRFER 732
YP +L+ ++ RV+ KF+A L+ + + +N LL + AGH + +
Sbjct: 630 YPSMLLLTADHNDRVVPLHSLKFIATLQYIVGRSRKQNNPLLIHVDTKAGHGAGKPTAKV 689
Query: 733 LREAAFTYTFLMRALSM 749
+ E + + F+ R L++
Sbjct: 690 IEEVSDMFAFIARCLNI 706
>pdb|1O6F|A Chain A, Prolyl Oligopeptidase From Porcine Brain, D641a Mutant
With Bound Peptide Ligand Suc-Gly-Pro
Length = 710
Score = 164 bits (414), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 103/317 (32%), Positives = 166/317 (52%), Gaps = 19/317 (5%)
Query: 446 FHYSSLRTPPSVYDYDM---DMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPIC 502
+ ++S +P +Y D+ ++ V + E + G D ++Y T + + + DGT+IP+
Sbjct: 396 YQFTSFLSPGIIYHCDLTKEELEPRVFR--EVTVKGIDASDYQTVQIFYPSKDGTKIPMF 453
Query: 503 IVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDR-GFIFAIAQIRGGGELGR 561
IV++K +KLDGS P LYGYG + I P ++ SRL + G + A+A IRGGGE G
Sbjct: 454 IVHKKG-IKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGE 512
Query: 562 QWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFK 621
W++ G K+N F DF AEYLIK Y + ++L I G S GGLL+ N RPDLF
Sbjct: 513 TWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFG 572
Query: 622 AAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQ-----N 676
+A V +D+L + A ++G ++ + ++ YSP+ NVK
Sbjct: 573 CVIAQVGVMDMLKFH---KYTIGHAWTTDYGCSDSKQHFEWLIKYSPLHNVKLPEADDIQ 629
Query: 677 YPHILVTAGLNDPRVMYSEPAKFVAKLREM----KTDDNILLFKCELGAGHFSKSGRFER 732
YP +L+ + RV+ KF+A L+ + + +N LL + AGH + +
Sbjct: 630 YPSMLLLTADHADRVVPLHSLKFIATLQYIVGRSRKQNNPLLIHVDTKAGHGAGKPTAKV 689
Query: 733 LREAAFTYTFLMRALSM 749
+ E + + F+ R L++
Sbjct: 690 IEEVSDMFAFIARCLNI 706
>pdb|4AX4|A Chain A, Prolyl Oligopeptidase From Porcine Brain, H680a Mutant
Length = 710
Score = 163 bits (412), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 103/317 (32%), Positives = 166/317 (52%), Gaps = 19/317 (5%)
Query: 446 FHYSSLRTPPSVYDYDM---DMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPIC 502
+ ++S +P +Y D+ ++ V + E + G D ++Y T + + + DGT+IP+
Sbjct: 396 YQFTSFLSPGIIYHCDLTKEELEPRVFR--EVTVKGIDASDYQTVQIFYPSKDGTKIPMF 453
Query: 503 IVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDR-GFIFAIAQIRGGGELGR 561
IV++K +KLDGS P LYGYG + I P ++ SRL + G + A+A IRGGGE G
Sbjct: 454 IVHKKG-IKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGE 512
Query: 562 QWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFK 621
W++ G K+N F DF AEYLIK Y + ++L I G S GGLL+ N RPDLF
Sbjct: 513 TWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFG 572
Query: 622 AAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQ-----N 676
+A V +D+L + A ++G ++ + ++ YSP+ NVK
Sbjct: 573 CVIAQVGVMDMLKFH---KYTIGHAWTTDYGCSDSKQHFEWLIKYSPLHNVKLPEADDIQ 629
Query: 677 YPHILVTAGLNDPRVMYSEPAKFVAKLREM----KTDDNILLFKCELGAGHFSKSGRFER 732
YP +L+ +D RV+ KF+A L+ + + +N LL + AG + +
Sbjct: 630 YPSMLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQNNPLLIHVDTKAGAGAGKPTAKV 689
Query: 733 LREAAFTYTFLMRALSM 749
+ E + + F+ R L++
Sbjct: 690 IEEVSDMFAFIARCLNI 706
>pdb|4HVT|A Chain A, Structure Of A Post-Proline Cleaving Enzyme From
Rickettsia Typhi
Length = 711
Score = 147 bits (371), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 98/299 (32%), Positives = 150/299 (50%), Gaps = 13/299 (4%)
Query: 454 PPSVYDYDMDMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPICIVYRKNLVKLD 513
PP++Y + + LK I L FD+ NY E+K A++ DG +IP +VY+K +K D
Sbjct: 420 PPTIYLW---VKTHELKIIRKALYSFDSENYVLEQKEATSFDGVKIPYFLVYKKG-IKFD 475
Query: 514 GSDPLLLYGYGSYEICNDPAFNSSRLSL-LDRGFIFAIAQIRGGGELGRQWYENGKFLKK 572
G +P LL YG +++ N P F+ + + + + +A IRGGGE G +W+++ + +K+
Sbjct: 476 GKNPTLLEAYGGFQVINAPYFSRIKNEVWVKNAGVSVLANIRGGGEFGPEWHKSAQGIKR 535
Query: 573 KNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDV 632
+ F DF A +E LIK + E L I+G S GGLL+ + RP+LF A VP +D
Sbjct: 536 QTAFNDFFAVSEELIKQNITSPEYLGIKGGSNGGLLVSVAMTQRPELFGAVACEVPILD- 594
Query: 633 LTTMLDPTIPLTTAEW-EEWGDPWKEEFYFYMKSYSPVDNVK-AQNYPHILVTAGLNDPR 690
M+ W E+GDP ++K Y+P++N+ Q YP +L+T + D R
Sbjct: 595 ---MIRYKEFGAGHSWVTEYGDPEIPNDLLHIKKYAPLENLSLTQKYPTVLITDSVLDQR 651
Query: 691 VMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSM 749
V F L + L + +GH S S E YTF AL +
Sbjct: 652 VHPWHGRIFEYVLAQNPNTKTYFLESKD--SGHGSGSDLKESANYFINLYTFFANALKL 708
>pdb|3O4J|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4J|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4J|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4J|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 79/193 (40%), Gaps = 10/193 (5%)
Query: 490 WASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFA 549
W + DG+++P V G +L++G G + +D ++++ SL GF
Sbjct: 337 WVESFDGSRVP-TYVLESGRAPTPGPTVVLVHG-GPFAEDSD-SWDTFAASLAAAGFHVV 393
Query: 550 IAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLI 609
+ RG G +W D A A + ++ ++ L I G S GG +
Sbjct: 394 MPNYRGSTGYGEEWRLKIIGDPCGGELEDVSAAARWARESGLASE--LYIMGYSYGGYMT 451
Query: 610 GAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPV 669
L M+P LFKA VA VD + L+ A + + + M+S SP+
Sbjct: 452 LCALTMKPGLFKAGVAGASVVD-----WEEMYELSDAAFRNFIEQLTGGSREIMRSRSPI 506
Query: 670 DNVKAQNYPHILV 682
++V P L+
Sbjct: 507 NHVDRIKEPLALI 519
>pdb|3O4H|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4H|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4H|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4H|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4I|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4I|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 79/193 (40%), Gaps = 10/193 (5%)
Query: 490 WASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFA 549
W + DG+++P V G +L++G G + +D ++++ SL GF
Sbjct: 337 WVESFDGSRVP-TYVLESGRAPTPGPTVVLVHG-GPFAEDSD-SWDTFAASLAAAGFHVV 393
Query: 550 IAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLI 609
+ RG G +W D A A + ++ ++ L I G S GG +
Sbjct: 394 MPNYRGSTGYGEEWRLKIIGDPCGGELEDVSAAARWARESGLASE--LYIMGYSYGGYMT 451
Query: 610 GAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPV 669
L M+P LFKA VA VD + L+ A + + + M+S SP+
Sbjct: 452 LCALTMKPGLFKAGVAGASVVD-----WEEMYELSDAAFRNFIEQLTGGSREIMRSRSPI 506
Query: 670 DNVKAQNYPHILV 682
++V P L+
Sbjct: 507 NHVDRIKEPLALI 519
>pdb|1VE6|A Chain A, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
Aeropyrum Pernix K1
pdb|1VE6|B Chain B, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
Aeropyrum Pernix K1
pdb|1VE7|A Chain A, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
AEROPYRUM Pernix K1 In Complex With P-Nitrophenyl
Phosphate
pdb|1VE7|B Chain B, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
AEROPYRUM Pernix K1 In Complex With P-Nitrophenyl
Phosphate
pdb|2HU5|A Chain A, Binding Of Inhibitors By Acylaminoacyl-Peptidase
pdb|2HU5|B Chain B, Binding Of Inhibitors By Acylaminoacyl-Peptidase
pdb|2HU7|A Chain A, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|2HU7|B Chain B, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|3O4G|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 79/193 (40%), Gaps = 10/193 (5%)
Query: 490 WASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFA 549
W + DG+++P V G +L++G G + +D ++++ SL GF
Sbjct: 337 WVESFDGSRVP-TYVLESGRAPTPGPTVVLVHG-GPFAEDSD-SWDTFAASLAAAGFHVV 393
Query: 550 IAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLI 609
+ RG G +W D A A + ++ ++ L I G S GG +
Sbjct: 394 MPNYRGSTGYGEEWRLKIIGDPCGGELEDVSAAARWARESGLASE--LYIMGYSYGGYMT 451
Query: 610 GAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPV 669
L M+P LFKA VA VD + L+ A + + + M+S SP+
Sbjct: 452 LCALTMKPGLFKAGVAGASVVD-----WEEMYELSDAAFRNFIEQLTGGSREIMRSRSPI 506
Query: 670 DNVKAQNYPHILV 682
++V P L+
Sbjct: 507 NHVDRIKEPLALI 519
>pdb|2QZP|A Chain A, Crystal Structure Of Mutation Of An Acylptide
HydrolaseESTERASE FROM AEROPYRUM PERNIX K1
pdb|2QZP|B Chain B, Crystal Structure Of Mutation Of An Acylptide
HydrolaseESTERASE FROM AEROPYRUM PERNIX K1
Length = 562
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 79/193 (40%), Gaps = 10/193 (5%)
Query: 490 WASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFA 549
W + DG+++P V G +L++G G + +D ++++ SL GF
Sbjct: 317 WVESFDGSRVP-TYVLESGRAPTPGPTVVLVHG-GPFAEDSD-SWDTFAASLAAAGFHVV 373
Query: 550 IAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLI 609
+ RG G +W D A A + ++ ++ L I G S GG +
Sbjct: 374 MPNYRGSTGYGEEWRLKIIGDPCGGELEDVSAAARWARESGLASE--LYIMGYSYGGYMT 431
Query: 610 GAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPV 669
L M+P LFKA VA VD + L+ A + + + M+S SP+
Sbjct: 432 LCALTMKPGLFKAGVAGASVVD-----WEEMYELSDAAFRNFIEQLTGGSREIMRSRSPI 486
Query: 670 DNVKAQNYPHILV 682
++V P L+
Sbjct: 487 NHVDRIKEPLALI 499
>pdb|2HU8|A Chain A, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|2HU8|B Chain B, Binding Of Inhibitors By Acylaminoacyl Peptidase
Length = 582
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 79/193 (40%), Gaps = 10/193 (5%)
Query: 490 WASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFA 549
W + DG+++P V G +L++G G + +D ++++ SL GF
Sbjct: 337 WVESFDGSRVP-TYVLESGRAPTPGPTVVLVHG-GPFAEDSD-SWDTFAASLAAAGFHVV 393
Query: 550 IAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLI 609
+ RG G +W D A A + ++ ++ L I G + GG +
Sbjct: 394 MPNYRGSTGYGEEWRLKIIGDPCGGELEDVSAAARWARESGLASE--LYIMGYAYGGYMT 451
Query: 610 GAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPV 669
L M+P LFKA VA VD + L+ A + + + M+S SP+
Sbjct: 452 LCALTMKPGLFKAGVAGASVVD-----WEEMYELSDAAFRNFIEQLTGGSREIMRSRSPI 506
Query: 670 DNVKAQNYPHILV 682
++V P L+
Sbjct: 507 NHVDRIKEPLALI 519
>pdb|2QR5|A Chain A, Aeropyrum Pernix Acylaminoacyl Peptidase, H367a Mutant
pdb|2QR5|B Chain B, Aeropyrum Pernix Acylaminoacyl Peptidase, H367a Mutant
Length = 582
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 78/193 (40%), Gaps = 10/193 (5%)
Query: 490 WASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFA 549
W + DG+++P V G +L+ G G + +D ++++ SL GF
Sbjct: 337 WVESFDGSRVP-TYVLESGRAPTPGPTVVLVAG-GPFAEDSD-SWDTFAASLAAAGFHVV 393
Query: 550 IAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLI 609
+ RG G +W D A A + ++ ++ L I G S GG +
Sbjct: 394 MPNYRGSTGYGEEWRLKIIGDPCGGELEDVSAAARWARESGLASE--LYIMGYSYGGYMT 451
Query: 610 GAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPV 669
L M+P LFKA VA VD + L+ A + + + M+S SP+
Sbjct: 452 LCALTMKPGLFKAGVAGASVVD-----WEEMYELSDAAFRNFIEQLTGGSREIMRSRSPI 506
Query: 670 DNVKAQNYPHILV 682
++V P L+
Sbjct: 507 NHVDRIKEPLALI 519
>pdb|2JID|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With 1-(3,4-
Dimethoxy-Phenyl)-3-M-Tolyl-Piperidine-4-Ylamine
pdb|2JID|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With 1-(3,4-
Dimethoxy-Phenyl)-3-M-Tolyl-Piperidine-4-Ylamine
Length = 736
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 57/153 (37%), Gaps = 31/153 (20%)
Query: 578 DFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTML 637
D I A K + +++ I G S GG + VL +FK +A P
Sbjct: 575 DQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAP--------- 625
Query: 638 DPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNV----------KAQNYPHI--LVTAG 685
+ WE + + E YM +P DN+ +A+N+ + L+ G
Sbjct: 626 -------VSRWEYYDSVYTER---YMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHG 675
Query: 686 LNDPRVMYSEPAKFVAKLREMKTDDNILLFKCE 718
D V + + A+ L ++ D + + E
Sbjct: 676 TADDNVHFQQSAQISKALVDVGVDFQAMWYTDE 708
>pdb|3QBJ|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Inhibitor
pdb|3QBJ|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Inhibitor
Length = 748
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 57/153 (37%), Gaps = 31/153 (20%)
Query: 578 DFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTML 637
D I A K + +++ I G S GG + VL +FK +A P
Sbjct: 575 DQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAP--------- 625
Query: 638 DPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNV----------KAQNYPHI--LVTAG 685
+ WE + + E YM +P DN+ +A+N+ + L+ G
Sbjct: 626 -------VSRWEYYDSVYTER---YMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHG 675
Query: 686 LNDPRVMYSEPAKFVAKLREMKTDDNILLFKCE 718
D V + + A+ L ++ D + + E
Sbjct: 676 TADDNVHFQQSAQISKALVDVGVDFQAMWYTDE 708
>pdb|3CCB|A Chain A, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCB|B Chain B, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCB|C Chain C, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCB|D Chain D, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCC|A Chain A, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCC|B Chain B, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCC|C Chain C, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCC|D Chain D, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3G0B|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Tak-322
pdb|3G0B|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Tak-322
pdb|3G0B|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Tak-322
pdb|3G0B|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Tak-322
pdb|3G0C|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 1
pdb|3G0C|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 1
pdb|3G0C|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 1
pdb|3G0C|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 1
pdb|3G0D|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 2
pdb|3G0D|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 2
pdb|3G0D|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 2
pdb|3G0D|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 2
pdb|3G0G|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinone Inhibitor 3
pdb|3G0G|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinone Inhibitor 3
pdb|3G0G|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinone Inhibitor 3
pdb|3G0G|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinone Inhibitor 3
pdb|3O95|A Chain A, Crystal Structure Of Human Dpp4 Bound To Tak-100
pdb|3O95|B Chain B, Crystal Structure Of Human Dpp4 Bound To Tak-100
pdb|3O95|C Chain C, Crystal Structure Of Human Dpp4 Bound To Tak-100
pdb|3O95|D Chain D, Crystal Structure Of Human Dpp4 Bound To Tak-100
pdb|3O9V|A Chain A, Crystal Structure Of Human Dpp4 Bound To Tak-986
pdb|3O9V|B Chain B, Crystal Structure Of Human Dpp4 Bound To Tak-986
pdb|3O9V|C Chain C, Crystal Structure Of Human Dpp4 Bound To Tak-986
pdb|3O9V|D Chain D, Crystal Structure Of Human Dpp4 Bound To Tak-986
pdb|3OPM|A Chain A, Crystal Structure Of Human Dpp4 Bound To Tak-294
pdb|3OPM|B Chain B, Crystal Structure Of Human Dpp4 Bound To Tak-294
pdb|3OPM|C Chain C, Crystal Structure Of Human Dpp4 Bound To Tak-294
pdb|3OPM|D Chain D, Crystal Structure Of Human Dpp4 Bound To Tak-294
pdb|4G1F|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Pyridopyrimidinedione Analogue
pdb|4G1F|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Pyridopyrimidinedione Analogue
pdb|4G1F|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Pyridopyrimidinedione Analogue
pdb|4G1F|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Pyridopyrimidinedione Analogue
Length = 740
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 57/153 (37%), Gaps = 31/153 (20%)
Query: 578 DFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTML 637
D I A K + +++ I G S GG + VL +FK +A P
Sbjct: 579 DQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAP--------- 629
Query: 638 DPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNV----------KAQNYPHI--LVTAG 685
+ WE + + E YM +P DN+ +A+N+ + L+ G
Sbjct: 630 -------VSRWEYYDSVYTER---YMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHG 679
Query: 686 LNDPRVMYSEPAKFVAKLREMKTDDNILLFKCE 718
D V + + A+ L ++ D + + E
Sbjct: 680 TADDNVHFQQSAQISKALVDVGVDFQAMWYTDE 712
>pdb|2QJR|A Chain A, Dipepdyl Peptidase Iv In Complex With Inhibitor Pzf
pdb|2QJR|B Chain B, Dipepdyl Peptidase Iv In Complex With Inhibitor Pzf
pdb|3F8S|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Inhibitor
pdb|3F8S|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Inhibitor
Length = 748
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 57/153 (37%), Gaps = 31/153 (20%)
Query: 578 DFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTML 637
D I A K + +++ I G S GG + VL +FK +A P
Sbjct: 575 DQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAP--------- 625
Query: 638 DPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNV----------KAQNYPHI--LVTAG 685
+ WE + + E YM +P DN+ +A+N+ + L+ G
Sbjct: 626 -------VSRWEYYDSVYTER---YMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHG 675
Query: 686 LNDPRVMYSEPAKFVAKLREMKTDDNILLFKCE 718
D V + + A+ L ++ D + + E
Sbjct: 676 TADDNVHFQQSAQISKALVDVGVDFQAMWYTDE 708
>pdb|2GBC|A Chain A, Native Dpp-Iv (Cd26) From Rat
pdb|2GBC|B Chain B, Native Dpp-Iv (Cd26) From Rat
pdb|2GBF|A Chain A, Rat Dpp-Iv With Alkynyl Cyanopyrrolidine #1
pdb|2GBF|B Chain B, Rat Dpp-Iv With Alkynyl Cyanopyrrolidine #1
pdb|2GBG|A Chain A, Rat Dpp-Iv With Alkynyl Cyanopyrrolidine #2
pdb|2GBG|B Chain B, Rat Dpp-Iv With Alkynyl Cyanopyrrolidine #2
pdb|2GBI|A Chain A, Rat Dpp-Iv With Xanthine Inhibitor 4
pdb|2GBI|B Chain B, Rat Dpp-Iv With Xanthine Inhibitor 4
pdb|2I3Z|A Chain A, Rat Dpp-iv With Xanthine Mimetic Inhibitor #7
pdb|2I3Z|B Chain B, Rat Dpp-iv With Xanthine Mimetic Inhibitor #7
pdb|2OAE|A Chain A, Crystal Structure Of Rat Dipeptidyl Peptidase (Dppiv) With
Thiazole-Based Peptide Mimetic #31
pdb|2OAE|B Chain B, Crystal Structure Of Rat Dipeptidyl Peptidase (Dppiv) With
Thiazole-Based Peptide Mimetic #31
pdb|4FFV|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With 11a19 Fab
pdb|4FFV|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With 11a19 Fab
pdb|4FFW|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With Fab + Sitagliptin
pdb|4FFW|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With Fab + Sitagliptin
Length = 730
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 57/153 (37%), Gaps = 31/153 (20%)
Query: 578 DFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTML 637
D I A +K + +++ I G S GG + VL +FK +A P
Sbjct: 569 DQIEAARQFLKMGFVDSKRVAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAP--------- 619
Query: 638 DPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNV----------KAQNYPHI--LVTAG 685
+ WE + + E YM +P DN+ +A+N+ + L+ G
Sbjct: 620 -------VSRWEYYDSVYTER---YMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHG 669
Query: 686 LNDPRVMYSEPAKFVAKLREMKTDDNILLFKCE 718
D V + + A+ L + D + + E
Sbjct: 670 TADDNVHFQQSAQISKALVDAGVDFQAMWYTDE 702
>pdb|2BGR|A Chain A, Crystal Structure Of Hiv-1 Tat Derived Nonapeptides
Tat(1-9) Bound To The Active Site Of Dipeptidyl
Peptidase Iv (Cd26)
pdb|2BGR|B Chain B, Crystal Structure Of Hiv-1 Tat Derived Nonapeptides
Tat(1-9) Bound To The Active Site Of Dipeptidyl
Peptidase Iv (Cd26)
Length = 738
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 57/153 (37%), Gaps = 31/153 (20%)
Query: 578 DFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTML 637
D I A K + +++ I G S GG + VL +FK +A P
Sbjct: 577 DQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAP--------- 627
Query: 638 DPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNV----------KAQNYPHI--LVTAG 685
+ WE + + E YM +P DN+ +A+N+ + L+ G
Sbjct: 628 -------VSRWEYYDSVYTER---YMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHG 677
Query: 686 LNDPRVMYSEPAKFVAKLREMKTDDNILLFKCE 718
D V + + A+ L ++ D + + E
Sbjct: 678 TADDNVHFQQSAQISKALVDVGVDFQAMWYTDE 710
>pdb|1R9M|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv At 2.1
Ang. Resolution.
pdb|1R9M|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv At 2.1
Ang. Resolution.
pdb|1R9M|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv At 2.1
Ang. Resolution.
pdb|1R9M|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv At 2.1
Ang. Resolution
Length = 733
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 57/153 (37%), Gaps = 31/153 (20%)
Query: 578 DFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTML 637
D I A K + +++ I G S GG + VL +FK +A P
Sbjct: 572 DQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAP--------- 622
Query: 638 DPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNV----------KAQNYPHI--LVTAG 685
+ WE + + E YM +P DN+ +A+N+ + L+ G
Sbjct: 623 -------VSRWEYYDSVYTER---YMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHG 672
Query: 686 LNDPRVMYSEPAKFVAKLREMKTDDNILLFKCE 718
D V + + A+ L ++ D + + E
Sbjct: 673 TADDNVHFQQSAQISKALVDVGVDFQAMWYTDE 705
>pdb|1U8E|A Chain A, Human Dipeptidyl Peptidase IvCD26 MUTANT Y547F
pdb|1U8E|B Chain B, Human Dipeptidyl Peptidase IvCD26 MUTANT Y547F
Length = 728
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 57/153 (37%), Gaps = 31/153 (20%)
Query: 578 DFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTML 637
D I A K + +++ I G S GG + VL +FK +A P
Sbjct: 567 DQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAP--------- 617
Query: 638 DPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNV----------KAQNYPHI--LVTAG 685
+ WE + + E YM +P DN+ +A+N+ + L+ G
Sbjct: 618 -------VSRWEYYDSVYTER---YMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHG 667
Query: 686 LNDPRVMYSEPAKFVAKLREMKTDDNILLFKCE 718
D V + + A+ L ++ D + + E
Sbjct: 668 TADDNVHFQQSAQISKALVDVGVDFQAMWYTDE 700
>pdb|1J2E|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv
pdb|1J2E|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv
pdb|1WCY|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (dppiv)
Complex With Diprotin A
pdb|1WCY|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (dppiv)
Complex With Diprotin A
pdb|3VJM|A Chain A, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With A Prolylthiazolidine Inhibitor #1
pdb|3VJM|B Chain B, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With A Prolylthiazolidine Inhibitor #1
pdb|3VJK|A Chain A, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With Mp-513
pdb|3VJK|B Chain B, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With Mp-513
pdb|3VJL|A Chain A, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With A Prolylthiazolidine Inhibitor #2
pdb|3VJL|B Chain B, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With A Prolylthiazolidine Inhibitor #2
Length = 740
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 57/153 (37%), Gaps = 31/153 (20%)
Query: 578 DFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTML 637
D I A K + +++ I G S GG + VL +FK +A P
Sbjct: 573 DQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAP--------- 623
Query: 638 DPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNV----------KAQNYPHI--LVTAG 685
+ WE + + E YM +P DN+ +A+N+ + L+ G
Sbjct: 624 -------VSRWEYYDSVYTER---YMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHG 673
Query: 686 LNDPRVMYSEPAKFVAKLREMKTDDNILLFKCE 718
D V + + A+ L ++ D + + E
Sbjct: 674 TADDNVHFQQSAQISKALVDVGVDFQAMWYTDE 706
>pdb|3Q8W|A Chain A, A B-Aminoacyl Containing Thiazolidine Derivative And Dppiv
Complex
pdb|3Q8W|B Chain B, A B-Aminoacyl Containing Thiazolidine Derivative And Dppiv
Complex
Length = 732
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 57/153 (37%), Gaps = 31/153 (20%)
Query: 578 DFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTML 637
D I A K + +++ I G S GG + VL +FK +A P
Sbjct: 567 DQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAP--------- 617
Query: 638 DPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNV----------KAQNYPHI--LVTAG 685
+ WE + + E YM +P DN+ +A+N+ + L+ G
Sbjct: 618 -------VSRWEYYDSVYTER---YMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHG 667
Query: 686 LNDPRVMYSEPAKFVAKLREMKTDDNILLFKCE 718
D V + + A+ L ++ D + + E
Sbjct: 668 TADDNVHFQQSAQISKALVDVGVDFQAMWYTDE 700
>pdb|2G5P|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
21ac
pdb|2G5P|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
21ac
pdb|2G5T|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
21ag
pdb|2G5T|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
21ag
pdb|2G63|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
24b
pdb|2G63|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
24b
pdb|2G63|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
24b
pdb|2G63|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
24b
pdb|2I03|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase 4 (Dpp Iv)
With Potent Alkynyl Cyanopyrrolidine (Abt-279)
pdb|2I03|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase 4 (Dpp Iv)
With Potent Alkynyl Cyanopyrrolidine (Abt-279)
pdb|2I03|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase 4 (Dpp Iv)
With Potent Alkynyl Cyanopyrrolidine (Abt-279)
pdb|2I03|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase 4 (Dpp Iv)
With Potent Alkynyl Cyanopyrrolidine (Abt-279)
pdb|2OQV|A Chain A, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidine-
Constrained Phenethylamine
pdb|2OQV|B Chain B, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidine-
Constrained Phenethylamine
pdb|2I78|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dpp
Iv) Complexed With Abt-341, A Cyclohexene-Constrained
Phenethylamine Inhibitor
pdb|2I78|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dpp
Iv) Complexed With Abt-341, A Cyclohexene-Constrained
Phenethylamine Inhibitor
pdb|2I78|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dpp
Iv) Complexed With Abt-341, A Cyclohexene-Constrained
Phenethylamine Inhibitor
pdb|2I78|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dpp
Iv) Complexed With Abt-341, A Cyclohexene-Constrained
Phenethylamine Inhibitor
pdb|2OAG|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
With Pyrrolidine-Constrained Phenethylamine 29g
pdb|2OAG|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
With Pyrrolidine-Constrained Phenethylamine 29g
pdb|2OAG|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
With Pyrrolidine-Constrained Phenethylamine 29g
pdb|2OAG|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
With Pyrrolidine-Constrained Phenethylamine 29g
Length = 726
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 57/153 (37%), Gaps = 31/153 (20%)
Query: 578 DFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTML 637
D I A K + +++ I G S GG + VL +FK +A P
Sbjct: 567 DQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAP--------- 617
Query: 638 DPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNV----------KAQNYPHI--LVTAG 685
+ WE + + E YM +P DN+ +A+N+ + L+ G
Sbjct: 618 -------VSRWEYYDSVYTER---YMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHG 667
Query: 686 LNDPRVMYSEPAKFVAKLREMKTDDNILLFKCE 718
D V + + A+ L ++ D + + E
Sbjct: 668 TADDNVHFQQSAQISKALVDVGVDFQAMWYTDE 700
>pdb|1N1M|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH AN
INHIBITOR
pdb|1N1M|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH AN
INHIBITOR
pdb|1NU6|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv
(Dpp-Iv)
pdb|1NU6|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv
(Dpp-Iv)
pdb|1NU8|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv
(Dpp-Iv) In Complex With Diprotin A (Ili)
pdb|1NU8|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv
(Dpp-Iv) In Complex With Diprotin A (Ili)
pdb|1TK3|A Chain A, Crystal Structure Of Human Apo Dipeptidyl Peptidase IvCD26
pdb|1TK3|B Chain B, Crystal Structure Of Human Apo Dipeptidyl Peptidase IvCD26
pdb|1TKR|A Chain A, Human Dipeptidyl Peptidase IvCD26 INHIBITED WITH
DIISOPROPYL Fluorophosphate
pdb|1TKR|B Chain B, Human Dipeptidyl Peptidase IvCD26 INHIBITED WITH
DIISOPROPYL Fluorophosphate
pdb|1W1I|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1W1I|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1W1I|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1W1I|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1RWQ|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With
5-Aminomethyl-6-(2,4-
Dichloro-Phenyl)-2-(3,
5-Dimethoxy-Phenyl)-Pyrimidin-4-Ylamine
pdb|1RWQ|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With
5-Aminomethyl-6-(2,4-
Dichloro-Phenyl)-2-(3,
5-Dimethoxy-Phenyl)-Pyrimidin-4-Ylamine
pdb|2BGN|A Chain A, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2BGN|B Chain B, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2BGN|C Chain C, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2BGN|D Chain D, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2AJL|I Chain I, X-Ray Structure Of Novel Biaryl-Based Dipeptidyl Peptidase
Iv Inhibitor
pdb|2AJL|J Chain J, X-Ray Structure Of Novel Biaryl-Based Dipeptidyl Peptidase
Iv Inhibitor
pdb|2BUB|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Cd26)
In Complex With A Reversed Amide Inhibitor
pdb|2BUB|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Cd26)
In Complex With A Reversed Amide Inhibitor
pdb|2OGZ|A Chain A, Crystal Structure Of Dpp-Iv Complexed With Lilly Aryl
Ketone Inhibitor
pdb|2OGZ|B Chain B, Crystal Structure Of Dpp-Iv Complexed With Lilly Aryl
Ketone Inhibitor
pdb|2OQI|A Chain A, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidinone-
Constrained Phenethylamine
pdb|2OQI|B Chain B, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidinone-
Constrained Phenethylamine
pdb|2OQI|C Chain C, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidinone-
Constrained Phenethylamine
pdb|2OQI|D Chain D, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidinone-
Constrained Phenethylamine
pdb|2OLE|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complex With Cyclic Hydrazine Derivatives
pdb|2OLE|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complex With Cyclic Hydrazine Derivatives
pdb|3BJM|A Chain A, Crystal Structure Of Human Dpp-Iv In Complex With (1s,3s,
5s)-2-[(2s)-
2-Amino-2-(3-Hydroxytricyclo[3.3.1.13,7]dec-1-
Yl)acetyl]-2- Azabicyclo[3.1.0]hexane-3-Carbonitrile
(Cas), (1s,3s,5s)-2-((2s)-2-
Amino-2-(3-Hydroxyadamantan-1-
Yl)acetyl)-2-Azabicyclo[3.1.0]hexane- 3-Carbonitrile
(Iupac), Or Bms-477118
pdb|3BJM|B Chain B, Crystal Structure Of Human Dpp-Iv In Complex With (1s,3s,
5s)-2-[(2s)-
2-Amino-2-(3-Hydroxytricyclo[3.3.1.13,7]dec-1-
Yl)acetyl]-2- Azabicyclo[3.1.0]hexane-3-Carbonitrile
(Cas), (1s,3s,5s)-2-((2s)-2-
Amino-2-(3-Hydroxyadamantan-1-
Yl)acetyl)-2-Azabicyclo[3.1.0]hexane- 3-Carbonitrile
(Iupac), Or Bms-477118
pdb|3EIO|A Chain A, Crystal Structure Analysis Of Dppiv Inhibitor
pdb|3EIO|B Chain B, Crystal Structure Analysis Of Dppiv Inhibitor
pdb|3H0C|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Cd26)
In Complex With A Reversed Amide Inhibitor
pdb|3H0C|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Cd26)
In Complex With A Reversed Amide Inhibitor
pdb|3KWF|A Chain A, Human Dpp-Iv With Carmegliptin
(S)-1-((2s,3s,11bs)-2-Amino-
9,10-Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,1-
A]isoquinolin-3-Yl)-4-Fluoromethyl-Pyrrolidin-2-One
pdb|3KWF|B Chain B, Human Dpp-Iv With Carmegliptin
(S)-1-((2s,3s,11bs)-2-Amino-
9,10-Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,1-
A]isoquinolin-3-Yl)-4-Fluoromethyl-Pyrrolidin-2-One
pdb|3OC0|A Chain A, Structure Of Human Dpp-Iv With Hts Hit
(2s,3s,11bs)-3-Butyl-9,10-
Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,
1-A]isoquinolin-2- Ylamine
pdb|3OC0|B Chain B, Structure Of Human Dpp-Iv With Hts Hit
(2s,3s,11bs)-3-Butyl-9,10-
Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,
1-A]isoquinolin-2- Ylamine
pdb|3KWJ|A Chain A, Strucutre Of Human Dpp-Iv With
(2s,3s,11bs)-3-(3-Fluoromethyl-Phenyl)-
9,10-Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,
1-A]isoquinolin-2- Ylamine
pdb|3KWJ|B Chain B, Strucutre Of Human Dpp-Iv With
(2s,3s,11bs)-3-(3-Fluoromethyl-Phenyl)-
9,10-Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,
1-A]isoquinolin-2- Ylamine
pdb|4DSA|A Chain A, Crystal Structure Of Dpp-iv With Compound C1
pdb|4DSA|B Chain B, Crystal Structure Of Dpp-iv With Compound C1
pdb|4DSZ|A Chain A, Crystal Structure Of Dpp-iv With Compound C2
pdb|4DSZ|B Chain B, Crystal Structure Of Dpp-iv With Compound C2
pdb|4DTC|A Chain A, Crystal Structure Of Dpp-iv With Compound C5
pdb|4DTC|B Chain B, Crystal Structure Of Dpp-iv With Compound C5
Length = 728
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 57/153 (37%), Gaps = 31/153 (20%)
Query: 578 DFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTML 637
D I A K + +++ I G S GG + VL +FK +A P
Sbjct: 567 DQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAP--------- 617
Query: 638 DPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNV----------KAQNYPHI--LVTAG 685
+ WE + + E YM +P DN+ +A+N+ + L+ G
Sbjct: 618 -------VSRWEYYDSVYTER---YMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHG 667
Query: 686 LNDPRVMYSEPAKFVAKLREMKTDDNILLFKCE 718
D V + + A+ L ++ D + + E
Sbjct: 668 TADDNVHFQQSAQISKALVDVGVDFQAMWYTDE 700
>pdb|2RGU|A Chain A, Crystal Structure Of Complex Of Human Dpp4 And Inhibitor
pdb|2RGU|B Chain B, Crystal Structure Of Complex Of Human Dpp4 And Inhibitor
Length = 734
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 57/153 (37%), Gaps = 31/153 (20%)
Query: 578 DFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTML 637
D I A K + +++ I G S GG + VL +FK +A P
Sbjct: 567 DQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAP--------- 617
Query: 638 DPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNV----------KAQNYPHI--LVTAG 685
+ WE + + E YM +P DN+ +A+N+ + L+ G
Sbjct: 618 -------VSRWEYYDSVYTER---YMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHG 667
Query: 686 LNDPRVMYSEPAKFVAKLREMKTDDNILLFKCE 718
D V + + A+ L ++ D + + E
Sbjct: 668 TADDNVHFQQSAQISKALVDVGVDFQAMWYTDE 700
>pdb|1X70|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With A Beta Amino
Acid Inhibitor
pdb|1X70|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With A Beta Amino
Acid Inhibitor
pdb|2FJP|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH AN
INHIBITOR
pdb|2FJP|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH AN
INHIBITOR
pdb|2HHA|A Chain A, The Structure Of Dpp4 In Complex With An Oxadiazole
Inhibitor
pdb|2HHA|B Chain B, The Structure Of Dpp4 In Complex With An Oxadiazole
Inhibitor
pdb|2IIT|A Chain A, Human Dipeptidyl Peptidase 4 In Complex With A
Diazepan-2-one Inhibitor
pdb|2IIT|B Chain B, Human Dipeptidyl Peptidase 4 In Complex With A
Diazepan-2-one Inhibitor
pdb|2IIV|A Chain A, Human Dipeptidyl Peptidase 4 In Complex With A
Diazepan-2-One Inhibitor
pdb|2IIV|B Chain B, Human Dipeptidyl Peptidase 4 In Complex With A
Diazepan-2-One Inhibitor
pdb|2OPH|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With An Alpha
Amino Acid Inhibitor
pdb|2OPH|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With An Alpha
Amino Acid Inhibitor
pdb|2P8S|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
CYCLOHEXALAMINE Inhibitor
pdb|2P8S|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
CYCLOHEXALAMINE Inhibitor
pdb|2QOE|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With A
Triazolopiperazine- Based Beta Amino Acid Inhibitor
pdb|2QOE|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With A
Triazolopiperazine- Based Beta Amino Acid Inhibitor
pdb|3C43|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
FLOUROOLEFIN Inhibitor
pdb|3C43|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
FLOUROOLEFIN Inhibitor
pdb|3C45|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
FLUOROOLEFIN Inhibitor
pdb|3C45|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
FLUOROOLEFIN Inhibitor
pdb|3D4L|A Chain A, Human Dipeptidyl Peptidase Iv/cd26 In Complex With A Novel
Inhibitor
pdb|3D4L|B Chain B, Human Dipeptidyl Peptidase Iv/cd26 In Complex With A Novel
Inhibitor
pdb|2QKY|A Chain A, Complex Structure Of Dipeptidyl Peptidase Iv And A
Oxadiazolyl Ketone
pdb|2QKY|B Chain B, Complex Structure Of Dipeptidyl Peptidase Iv And A
Oxadiazolyl Ketone
pdb|2QKY|C Chain C, Complex Structure Of Dipeptidyl Peptidase Iv And A
Oxadiazolyl Ketone
pdb|2QKY|D Chain D, Complex Structure Of Dipeptidyl Peptidase Iv And A
Oxadiazolyl Ketone
pdb|3HAB|A Chain A, The Structure Of Dpp4 In Complex With Piperidine Fused
Benzimidazole 25
pdb|3HAB|B Chain B, The Structure Of Dpp4 In Complex With Piperidine Fused
Benzimidazole 25
pdb|3HAC|A Chain A, The Structure Of Dpp-4 In Complex With Piperidine Fused
Imidazopyridine 34
pdb|3HAC|B Chain B, The Structure Of Dpp-4 In Complex With Piperidine Fused
Imidazopyridine 34
Length = 728
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 57/153 (37%), Gaps = 31/153 (20%)
Query: 578 DFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTML 637
D I A K + +++ I G S GG + VL +FK +A P
Sbjct: 567 DQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAP--------- 617
Query: 638 DPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNV----------KAQNYPHI--LVTAG 685
+ WE + + E YM +P DN+ +A+N+ + L+ G
Sbjct: 618 -------VSRWEYYDSVYTER---YMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHG 667
Query: 686 LNDPRVMYSEPAKFVAKLREMKTDDNILLFKCE 718
D V + + A+ L ++ D + + E
Sbjct: 668 TADDNVHFQQSAQISKALVDVGVDFQAMWYTDE 700
>pdb|1PFQ|A Chain A, Crystal Structure Of Human Apo Dipeptidyl Peptidase Iv /
Cd26
pdb|1PFQ|B Chain B, Crystal Structure Of Human Apo Dipeptidyl Peptidase Iv /
Cd26
Length = 731
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 57/153 (37%), Gaps = 31/153 (20%)
Query: 578 DFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTML 637
D I A K + +++ I G S GG + VL +FK +A P
Sbjct: 570 DQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAP--------- 620
Query: 638 DPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNV----------KAQNYPHI--LVTAG 685
+ WE + + E YM +P DN+ +A+N+ + L+ G
Sbjct: 621 -------VSRWEYYDSVYTER---YMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHG 670
Query: 686 LNDPRVMYSEPAKFVAKLREMKTDDNILLFKCE 718
D V + + A+ L ++ D + + E
Sbjct: 671 TADDNVHFQQSAQISKALVDVGVDFQAMWYTDE 703
>pdb|1R9N|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Decapeptide (Tnpy) At 2.3 Ang. Resolution
pdb|1R9N|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Decapeptide (Tnpy) At 2.3 Ang. Resolution
pdb|1R9N|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Decapeptide (Tnpy) At 2.3 Ang. Resolution
pdb|1R9N|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Decapeptide (Tnpy) At 2.3 Ang. Resolution
Length = 739
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 57/153 (37%), Gaps = 31/153 (20%)
Query: 578 DFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTML 637
D I A K + +++ I G S GG + VL +FK +A P
Sbjct: 578 DQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAP--------- 628
Query: 638 DPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNV----------KAQNYPHI--LVTAG 685
+ WE + + E YM +P DN+ +A+N+ + L+ G
Sbjct: 629 -------VSRWEYYDSVYTER---YMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHG 678
Query: 686 LNDPRVMYSEPAKFVAKLREMKTDDNILLFKCE 718
D V + + A+ L ++ D + + E
Sbjct: 679 TADDNVHFQQSAQISKALVDVGVDFQAMWYTDE 711
>pdb|2RIP|A Chain A, Structure Of Dppiv In Complex With An Inhibitor
Length = 729
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 57/153 (37%), Gaps = 31/153 (20%)
Query: 578 DFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTML 637
D I A K + +++ I G S GG + VL +FK +A P
Sbjct: 568 DQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAP--------- 618
Query: 638 DPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNV----------KAQNYPHI--LVTAG 685
+ WE + + E YM +P DN+ +A+N+ + L+ G
Sbjct: 619 -------VSRWEYYDSVYTER---YMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHG 668
Query: 686 LNDPRVMYSEPAKFVAKLREMKTDDNILLFKCE 718
D V + + A+ L ++ D + + E
Sbjct: 669 TADDNVHFQQSAQISKALVDVGVDFQAMWYTDE 701
>pdb|2ONC|A Chain A, Crystal Structure Of Human Dpp-4
pdb|2ONC|B Chain B, Crystal Structure Of Human Dpp-4
pdb|2ONC|C Chain C, Crystal Structure Of Human Dpp-4
pdb|2ONC|D Chain D, Crystal Structure Of Human Dpp-4
Length = 731
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 57/153 (37%), Gaps = 31/153 (20%)
Query: 578 DFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTML 637
D I A K + +++ I G S GG + VL +FK +A P
Sbjct: 570 DQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAP--------- 620
Query: 638 DPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNV----------KAQNYPHI--LVTAG 685
+ WE + + E YM +P DN+ +A+N+ + L+ G
Sbjct: 621 -------VSRWEYYDSVYTER---YMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHG 670
Query: 686 LNDPRVMYSEPAKFVAKLREMKTDDNILLFKCE 718
D V + + A+ L ++ D + + E
Sbjct: 671 TADDNVHFQQSAQISKALVDVGVDFQAMWYTDE 703
>pdb|2QT9|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl
Cyclohexylalanine Inhibitor
pdb|2QT9|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl
Cyclohexylalanine Inhibitor
pdb|2QTB|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl
Cyclohexylalanine Inhibitor
pdb|2QTB|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl
Cyclohexylalanine Inhibitor
Length = 766
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 57/153 (37%), Gaps = 31/153 (20%)
Query: 578 DFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTML 637
D I A K + +++ I G S GG + VL +FK +A P
Sbjct: 605 DQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAP--------- 655
Query: 638 DPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNV----------KAQNYPHI--LVTAG 685
+ WE + + E YM +P DN+ +A+N+ + L+ G
Sbjct: 656 -------VSRWEYYDSVYTER---YMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHG 705
Query: 686 LNDPRVMYSEPAKFVAKLREMKTDDNILLFKCE 718
D V + + A+ L ++ D + + E
Sbjct: 706 TADDNVHFQQSAQISKALVDVGVDFQAMWYTDE 738
>pdb|3NOX|A Chain A, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-(6-
(Aminomethyl)-5-(2,4-Dichlorophenyl)-7-Methylimidazo[1,
2-A]pyrimidin- 2-Yl)(Morpholino)methanone
pdb|3NOX|B Chain B, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-(6-
(Aminomethyl)-5-(2,4-Dichlorophenyl)-7-Methylimidazo[1,
2-A]pyrimidin- 2-Yl)(Morpholino)methanone
pdb|3SWW|A Chain A, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-3-
(Aminomethyl)-4-(2,
4-Dichlorophenyl)-6-(2-Methoxyphenyl)- 2-Methyl-
5h-Pyrrolo[3,4-B]pyridin-7(6h)-One
pdb|3SWW|B Chain B, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-3-
(Aminomethyl)-4-(2,
4-Dichlorophenyl)-6-(2-Methoxyphenyl)- 2-Methyl-
5h-Pyrrolo[3,4-B]pyridin-7(6h)-One
pdb|3SX4|A Chain A, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-3-
(Aminomethyl)-4-(2,
4-Dichlorophenyl)-6-(2-Methoxyphenyl)- 2-Methyl-
5h-Pyrrolo[3,4-B]pyridin-7(6h)-One
pdb|3SX4|B Chain B, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-3-
(Aminomethyl)-4-(2,
4-Dichlorophenyl)-6-(2-Methoxyphenyl)- 2-Methyl-
5h-Pyrrolo[3,4-B]pyridin-7(6h)-One
pdb|3Q0T|A Chain A, Crystal Structure Of Human Dpp-iv In Complex Withsa-(+)-
Methyl2-(3-
(aminomethyl)-4-(2,4-dichlorophenyl)-2-methyl-
7-oxo-5h-pyrrolo[3,4- B]pyridin-6(7h)-yl)acetate
pdb|3Q0T|B Chain B, Crystal Structure Of Human Dpp-iv In Complex Withsa-(+)-
Methyl2-(3-
(aminomethyl)-4-(2,4-dichlorophenyl)-2-methyl-
7-oxo-5h-pyrrolo[3,4- B]pyridin-6(7h)-yl)acetate
Length = 753
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 57/153 (37%), Gaps = 31/153 (20%)
Query: 578 DFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTML 637
D I A K + +++ I G S GG + VL +FK +A P
Sbjct: 569 DQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAP--------- 619
Query: 638 DPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNV----------KAQNYPHI--LVTAG 685
+ WE + + E YM +P DN+ +A+N+ + L+ G
Sbjct: 620 -------VSRWEYYDSVYTER---YMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHG 669
Query: 686 LNDPRVMYSEPAKFVAKLREMKTDDNILLFKCE 718
D V + + A+ L ++ D + + E
Sbjct: 670 TADDNVHFQQSAQISKALVDVGVDFQAMWYTDE 702
>pdb|4A5S|A Chain A, Crystal Structure Of Human Dpp4 In Complex With A Noval
Heterocyclic Dpp4 Inhibitor
pdb|4A5S|B Chain B, Crystal Structure Of Human Dpp4 In Complex With A Noval
Heterocyclic Dpp4 Inhibitor
Length = 740
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 57/153 (37%), Gaps = 31/153 (20%)
Query: 578 DFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTML 637
D I A K + +++ I G S GG + VL +FK +A P
Sbjct: 567 DQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAP--------- 617
Query: 638 DPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNV----------KAQNYPHI--LVTAG 685
+ WE + + E YM +P DN+ +A+N+ + L+ G
Sbjct: 618 -------VSRWEYYDSVYTER---YMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHG 667
Query: 686 LNDPRVMYSEPAKFVAKLREMKTDDNILLFKCE 718
D V + + A+ L ++ D + + E
Sbjct: 668 TADDNVHFQQSAQISKALVDVGVDFQAMWYTDE 700
>pdb|1ORV|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26)
pdb|1ORV|B Chain B, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26)
pdb|1ORV|C Chain C, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26)
pdb|1ORV|D Chain D, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26)
pdb|1ORW|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Peptidomimetic Inhibitor
pdb|1ORW|B Chain B, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Peptidomimetic Inhibitor
pdb|1ORW|C Chain C, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Peptidomimetic Inhibitor
pdb|1ORW|D Chain D, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Peptidomimetic Inhibitor
pdb|2BUA|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Low Molecular Weight Inhibitor.
pdb|2BUA|B Chain B, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Low Molecular Weight Inhibitor.
pdb|2BUA|C Chain C, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Low Molecular Weight Inhibitor.
pdb|2BUA|D Chain D, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Low Molecular Weight Inhibitor.
pdb|2BUC|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Tetrahydroisoquinoline
Inhibitor
pdb|2BUC|B Chain B, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Tetrahydroisoquinoline
Inhibitor
pdb|2BUC|C Chain C, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Tetrahydroisoquinoline
Inhibitor
pdb|2BUC|D Chain D, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Tetrahydroisoquinoline
Inhibitor
pdb|2AJ8|A Chain A, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
7-Benzyl-1,3-
Dimethyl-8-Piperazin-1-Yl-3,7-Dihydro-Purine-2,6-Dione
(Bdpx)
pdb|2AJ8|B Chain B, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
7-Benzyl-1,3-
Dimethyl-8-Piperazin-1-Yl-3,7-Dihydro-Purine-2,6-Dione
(Bdpx)
pdb|2AJ8|C Chain C, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
7-Benzyl-1,3-
Dimethyl-8-Piperazin-1-Yl-3,7-Dihydro-Purine-2,6-Dione
(Bdpx)
pdb|2AJ8|D Chain D, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
7-Benzyl-1,3-
Dimethyl-8-Piperazin-1-Yl-3,7-Dihydro-Purine-2,6-Dione
(Bdpx)
pdb|2AJB|A Chain A, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With The
Tripeptide Tert-Butyl-Gly-L-Pro-L-Ile (Tbu-Gpi)
pdb|2AJB|B Chain B, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With The
Tripeptide Tert-Butyl-Gly-L-Pro-L-Ile (Tbu-Gpi)
pdb|2AJB|C Chain C, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With The
Tripeptide Tert-Butyl-Gly-L-Pro-L-Ile (Tbu-Gpi)
pdb|2AJB|D Chain D, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With The
Tripeptide Tert-Butyl-Gly-L-Pro-L-Ile (Tbu-Gpi)
pdb|2AJC|A Chain A, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
4-(2- Aminoethyl)-Benzene Sulphonyl Fluoride (Aebsf)
pdb|2AJC|B Chain B, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
4-(2- Aminoethyl)-Benzene Sulphonyl Fluoride (Aebsf)
pdb|2AJC|C Chain C, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
4-(2- Aminoethyl)-Benzene Sulphonyl Fluoride (Aebsf)
pdb|2AJC|D Chain D, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
4-(2- Aminoethyl)-Benzene Sulphonyl Fluoride (Aebsf)
pdb|2AJD|A Chain A, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
L-Pro-Boro-L- Pro (Boropro)
pdb|2AJD|B Chain B, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
L-Pro-Boro-L- Pro (Boropro)
pdb|2AJD|C Chain C, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
L-Pro-Boro-L- Pro (Boropro)
pdb|2AJD|D Chain D, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
L-Pro-Boro-L- Pro (Boropro)
Length = 728
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 32/153 (20%), Positives = 56/153 (36%), Gaps = 31/153 (20%)
Query: 578 DFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTML 637
D I K + +++ I G S GG + VL +FK +A P
Sbjct: 567 DQIEATRQFSKMGFVDDKRIAIWGWSYGGYVTSMVLGAGSGVFKCGIAVAP--------- 617
Query: 638 DPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNV----------KAQNYPHI--LVTAG 685
++WE + + E YM +P DN+ +A+N+ + L+ G
Sbjct: 618 -------VSKWEYYDSVYTER---YMGLPTPEDNLDYYRNSTVMSRAENFKQVEYLLIHG 667
Query: 686 LNDPRVMYSEPAKFVAKLREMKTDDNILLFKCE 718
D V + + A+ L + D + + E
Sbjct: 668 TADDNVHFQQSAQLSKALVDAGVDFQTMWYTDE 700
>pdb|2GOP|A Chain A, The Beta-Propeller Domain Of The Trilobed Protease From
Pyrococcus Furiosus Reveals An Open Velcro Topology
pdb|2GOP|B Chain B, The Beta-Propeller Domain Of The Trilobed Protease From
Pyrococcus Furiosus Reveals An Open Velcro Topology
Length = 347
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 171 DAPPEHLILDENVKAEGRGFYSVGCF-QVSPDNKLVAYAEDTKGDEIYTVYVIDIET 226
D E+ I+ EN+K R F ++SPD K +A+ + ++ ++V D+ET
Sbjct: 38 DNKYENTIVIENLKNNARRFIENATMPRISPDGKKIAFMRANEEKKVSEIWVADLET 94
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,279,196
Number of Sequences: 62578
Number of extensions: 1024198
Number of successful extensions: 2357
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 2244
Number of HSP's gapped (non-prelim): 57
length of query: 758
length of database: 14,973,337
effective HSP length: 106
effective length of query: 652
effective length of database: 8,340,069
effective search space: 5437724988
effective search space used: 5437724988
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)