Query 004369
Match_columns 758
No_of_seqs 889 out of 4899
Neff 10.4
Searched_HMMs 46136
Date Thu Mar 28 22:16:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004369.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004369hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 5E-135 1E-139 1183.1 79.3 690 51-753 164-857 (857)
2 PLN03081 pentatricopeptide (PP 100.0 2E-123 3E-128 1061.1 68.7 608 137-755 84-697 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 1.7E-84 3.7E-89 758.3 67.1 670 51-751 63-747 (857)
4 PLN03081 pentatricopeptide (PP 100.0 5.3E-69 1.1E-73 613.2 54.1 458 51-522 99-560 (697)
5 PLN03218 maturation of RBCL 1; 100.0 9.7E-67 2.1E-71 595.4 58.8 503 106-626 367-915 (1060)
6 PLN03218 maturation of RBCL 1; 100.0 1.6E-65 3.5E-70 585.5 58.8 504 70-587 366-910 (1060)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 2.5E-32 5.3E-37 326.7 60.8 549 50-622 306-868 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.3E-31 2.9E-36 320.4 61.7 554 44-621 266-833 (899)
9 PF14432 DYW_deaminase: DYW fa 100.0 6.3E-32 1.4E-36 226.1 8.2 101 627-745 2-116 (116)
10 PRK11447 cellulose synthase su 100.0 5.2E-23 1.1E-27 246.8 58.9 412 183-619 277-739 (1157)
11 PRK11447 cellulose synthase su 99.9 2.7E-23 5.9E-28 249.2 54.8 516 84-621 122-701 (1157)
12 PRK09782 bacteriophage N4 rece 99.9 3.9E-20 8.4E-25 211.8 58.5 558 43-621 48-707 (987)
13 PRK09782 bacteriophage N4 rece 99.9 1.7E-18 3.7E-23 198.4 54.4 567 22-622 61-742 (987)
14 KOG4626 O-linked N-acetylgluco 99.9 2.8E-19 6E-24 181.1 35.9 442 144-609 52-508 (966)
15 KOG4626 O-linked N-acetylgluco 99.9 1E-18 2.3E-23 177.0 32.2 415 183-621 56-486 (966)
16 TIGR00990 3a0801s09 mitochondr 99.8 8.7E-17 1.9E-21 181.5 44.3 249 366-619 307-570 (615)
17 PRK11788 tetratricopeptide rep 99.8 5.1E-18 1.1E-22 181.7 29.0 291 320-628 44-355 (389)
18 KOG2002 TPR-containing nuclear 99.8 6.4E-16 1.4E-20 165.5 43.6 555 46-622 171-800 (1018)
19 PRK11788 tetratricopeptide rep 99.8 5E-18 1.1E-22 181.8 27.6 305 150-505 45-363 (389)
20 PRK10049 pgaA outer membrane p 99.8 1.2E-15 2.6E-20 175.4 42.9 401 147-593 22-463 (765)
21 PRK15174 Vi polysaccharide exp 99.8 9.1E-16 2E-20 172.5 38.8 350 222-591 17-386 (656)
22 KOG2002 TPR-containing nuclear 99.8 4.8E-15 1E-19 158.9 41.6 543 55-620 146-745 (1018)
23 PRK10049 pgaA outer membrane p 99.8 2.3E-15 5E-20 173.0 41.6 395 208-620 13-456 (765)
24 TIGR00990 3a0801s09 mitochondr 99.8 8.1E-15 1.8E-19 165.5 42.0 437 143-619 130-596 (615)
25 PRK14574 hmsH outer membrane p 99.8 3.3E-14 7.2E-19 160.1 45.4 435 118-593 43-520 (822)
26 PRK15174 Vi polysaccharide exp 99.7 6.8E-15 1.5E-19 165.5 37.1 326 276-621 42-382 (656)
27 PRK14574 hmsH outer membrane p 99.7 8.6E-14 1.9E-18 156.8 42.9 435 149-621 43-514 (822)
28 KOG4422 Uncharacterized conser 99.7 3.3E-13 7.2E-18 131.9 35.0 318 52-420 128-465 (625)
29 KOG2003 TPR repeat-containing 99.7 1.1E-13 2.4E-18 135.8 30.7 481 80-606 207-709 (840)
30 KOG4422 Uncharacterized conser 99.6 5.1E-12 1.1E-16 123.7 37.2 418 139-587 115-591 (625)
31 KOG2076 RNA polymerase III tra 99.6 4E-11 8.6E-16 128.6 46.7 340 88-442 153-545 (895)
32 KOG0495 HAT repeat protein [RN 99.6 1.9E-10 4.1E-15 118.7 48.1 490 86-637 388-895 (913)
33 KOG0495 HAT repeat protein [RN 99.6 1.7E-10 3.6E-15 119.1 46.8 437 159-622 365-848 (913)
34 KOG2076 RNA polymerase III tra 99.6 1.4E-10 3E-15 124.6 43.9 540 51-603 151-786 (895)
35 KOG4318 Bicoid mRNA stability 99.6 1.6E-11 3.5E-16 130.6 35.4 533 60-630 11-603 (1088)
36 PF13429 TPR_15: Tetratricopep 99.5 5.2E-14 1.1E-18 142.6 11.3 248 366-618 21-275 (280)
37 KOG0547 Translocase of outer m 99.5 1.8E-10 3.9E-15 115.1 32.1 213 401-619 339-565 (606)
38 KOG1155 Anaphase-promoting com 99.5 2.6E-10 5.7E-15 113.3 32.4 360 205-618 159-534 (559)
39 KOG1126 DNA-binding cell divis 99.5 5E-12 1.1E-16 131.3 21.4 268 366-667 332-607 (638)
40 KOG2003 TPR repeat-containing 99.4 5E-11 1.1E-15 117.4 25.5 447 147-620 208-689 (840)
41 KOG1155 Anaphase-promoting com 99.4 1E-09 2.2E-14 109.2 33.2 250 366-619 240-494 (559)
42 KOG1173 Anaphase-promoting com 99.4 7.2E-10 1.6E-14 113.1 31.7 248 366-619 257-517 (611)
43 KOG1915 Cell cycle control pro 99.4 2.5E-08 5.3E-13 99.6 41.1 478 122-619 86-624 (677)
44 KOG1126 DNA-binding cell divis 99.4 4.7E-11 1E-15 124.3 22.4 276 326-622 334-622 (638)
45 KOG1915 Cell cycle control pro 99.4 2.9E-09 6.3E-14 106.1 33.5 416 222-659 85-535 (677)
46 PRK10747 putative protoheme IX 99.4 2.8E-10 6.2E-15 120.8 27.9 225 318-587 160-391 (398)
47 PF13429 TPR_15: Tetratricopep 99.4 2.2E-12 4.7E-17 130.8 10.3 251 316-585 13-276 (280)
48 TIGR00540 hemY_coli hemY prote 99.4 1.6E-09 3.4E-14 115.8 32.0 286 253-585 96-398 (409)
49 PRK10747 putative protoheme IX 99.4 2.6E-09 5.7E-14 113.4 33.2 244 366-619 131-389 (398)
50 TIGR00540 hemY_coli hemY prote 99.3 6.9E-10 1.5E-14 118.6 27.6 283 221-551 95-396 (409)
51 KOG2047 mRNA splicing factor [ 99.3 5.6E-07 1.2E-11 93.6 46.0 446 76-532 104-629 (835)
52 TIGR02521 type_IV_pilW type IV 99.3 3.8E-10 8.3E-15 111.1 23.2 199 420-619 28-231 (234)
53 KOG4318 Bicoid mRNA stability 99.3 1.1E-08 2.5E-13 109.5 31.0 477 95-619 11-556 (1088)
54 COG3071 HemY Uncharacterized e 99.2 2.1E-08 4.6E-13 98.6 29.5 287 254-586 97-390 (400)
55 PF13041 PPR_2: PPR repeat fam 99.2 1.7E-11 3.7E-16 86.9 6.1 50 239-288 1-50 (50)
56 PF13041 PPR_2: PPR repeat fam 99.2 2.9E-11 6.2E-16 85.7 7.0 50 452-501 1-50 (50)
57 KOG1174 Anaphase-promoting com 99.2 1.3E-07 2.8E-12 93.0 33.6 309 274-596 192-510 (564)
58 KOG1840 Kinesin light chain [C 99.2 6.9E-09 1.5E-13 109.6 25.8 232 387-618 198-477 (508)
59 COG3071 HemY Uncharacterized e 99.2 3E-08 6.5E-13 97.6 27.0 287 152-483 96-390 (400)
60 COG2956 Predicted N-acetylgluc 99.2 3.4E-08 7.5E-13 94.2 26.1 319 253-652 47-376 (389)
61 KOG4162 Predicted calmodulin-b 99.2 2.2E-07 4.7E-12 98.8 34.8 452 153-621 240-784 (799)
62 COG2956 Predicted N-acetylgluc 99.2 8.8E-08 1.9E-12 91.5 28.1 246 366-616 48-307 (389)
63 PRK12370 invasion protein regu 99.1 1.8E-08 3.9E-13 112.0 25.7 244 367-620 275-535 (553)
64 KOG0547 Translocase of outer m 99.1 2E-07 4.4E-12 93.8 29.1 184 432-619 335-531 (606)
65 TIGR02521 type_IV_pilW type IV 99.1 4.1E-08 9E-13 96.5 24.2 199 387-588 30-234 (234)
66 KOG2376 Signal recognition par 99.1 1.5E-06 3.3E-11 89.8 34.6 364 222-613 91-513 (652)
67 KOG2047 mRNA splicing factor [ 99.1 8.5E-06 1.8E-10 85.1 39.6 476 109-620 102-687 (835)
68 KOG3785 Uncharacterized conser 99.1 6.5E-07 1.4E-11 86.4 29.4 442 84-589 32-493 (557)
69 PRK11189 lipoprotein NlpI; Pro 99.0 3.4E-08 7.3E-13 100.3 22.4 211 402-621 40-266 (296)
70 PRK12370 invasion protein regu 99.0 2.9E-08 6.3E-13 110.3 23.7 210 402-619 275-501 (553)
71 KOG1840 Kinesin light chain [C 99.0 6.2E-08 1.3E-12 102.5 24.4 162 424-585 284-478 (508)
72 KOG0985 Vesicle coat protein c 99.0 2.2E-05 4.8E-10 85.8 42.3 157 438-617 1090-1246(1666)
73 KOG3616 Selective LIM binding 99.0 1.4E-06 3.1E-11 91.5 31.7 197 49-267 454-674 (1636)
74 KOG4162 Predicted calmodulin-b 99.0 5E-06 1.1E-10 88.8 35.4 439 105-592 319-789 (799)
75 PRK11189 lipoprotein NlpI; Pro 99.0 1.7E-07 3.7E-12 95.2 23.9 227 366-600 39-280 (296)
76 KOG1129 TPR repeat-containing 99.0 2.4E-08 5.2E-13 95.1 16.1 224 392-621 227-459 (478)
77 KOG1173 Anaphase-promoting com 99.0 8.5E-07 1.8E-11 91.2 27.9 276 240-566 243-531 (611)
78 KOG3785 Uncharacterized conser 99.0 1.2E-05 2.6E-10 77.9 33.6 190 428-622 290-492 (557)
79 KOG0985 Vesicle coat protein c 98.9 7.4E-05 1.6E-09 81.9 42.1 228 100-337 504-750 (1666)
80 COG3063 PilF Tfp pilus assembl 98.9 1.3E-07 2.9E-12 86.3 18.2 162 456-622 37-204 (250)
81 KOG1156 N-terminal acetyltrans 98.9 4.2E-05 9.1E-10 80.3 36.3 448 77-583 11-508 (700)
82 KOG1156 N-terminal acetyltrans 98.8 3.1E-05 6.8E-10 81.3 35.0 387 222-622 53-470 (700)
83 KOG1129 TPR repeat-containing 98.8 9.1E-08 2E-12 91.2 14.7 232 346-593 227-465 (478)
84 KOG2376 Signal recognition par 98.8 3.3E-05 7.2E-10 80.2 34.1 126 455-583 377-517 (652)
85 PF04733 Coatomer_E: Coatomer 98.8 2.6E-07 5.7E-12 92.4 17.6 240 366-619 14-264 (290)
86 KOG1174 Anaphase-promoting com 98.8 2.5E-05 5.5E-10 77.4 30.3 406 209-665 96-519 (564)
87 COG3063 PilF Tfp pilus assembl 98.8 2.8E-06 6E-11 77.9 21.3 195 394-591 41-241 (250)
88 KOG1125 TPR repeat-containing 98.8 2.9E-07 6.4E-12 94.9 16.5 218 399-619 296-526 (579)
89 KOG3617 WD40 and TPR repeat-co 98.7 6.6E-05 1.4E-09 80.6 33.7 81 243-338 914-994 (1416)
90 KOG0548 Molecular co-chaperone 98.7 1.8E-05 3.8E-10 81.5 28.4 216 391-620 227-455 (539)
91 PRK04841 transcriptional regul 98.7 0.0008 1.7E-08 80.8 46.0 406 157-589 292-763 (903)
92 KOG0624 dsRNA-activated protei 98.7 3.1E-05 6.7E-10 74.9 26.6 208 216-490 44-257 (504)
93 KOG3616 Selective LIM binding 98.7 0.00031 6.6E-09 74.6 35.2 256 321-620 742-1024(1636)
94 PF12569 NARP1: NMDA receptor- 98.6 1.1E-05 2.5E-10 86.7 25.4 251 366-622 17-293 (517)
95 PF12569 NARP1: NMDA receptor- 98.6 2E-05 4.4E-10 84.8 27.0 126 491-619 196-333 (517)
96 PF04733 Coatomer_E: Coatomer 98.6 3.8E-06 8.2E-11 84.1 19.5 160 425-591 104-270 (290)
97 PRK15359 type III secretion sy 98.6 1.5E-06 3.3E-11 77.5 14.3 123 475-603 14-138 (144)
98 cd05804 StaR_like StaR_like; a 98.6 5.4E-05 1.2E-09 79.9 28.7 252 366-620 56-336 (355)
99 PRK10370 formate-dependent nit 98.5 7.5E-06 1.6E-10 77.3 18.2 146 461-620 23-173 (198)
100 TIGR03302 OM_YfiO outer membra 98.5 8.2E-06 1.8E-10 80.4 19.3 180 421-620 31-232 (235)
101 PRK15363 pathogenicity island 98.5 2.6E-06 5.7E-11 74.5 13.2 118 525-665 35-154 (157)
102 KOG1127 TPR repeat-containing 98.5 0.00021 4.6E-09 78.7 30.1 499 110-618 493-1102(1238)
103 PRK15359 type III secretion sy 98.5 5.5E-06 1.2E-10 73.9 15.4 106 510-620 14-121 (144)
104 KOG1070 rRNA processing protei 98.5 2E-05 4.4E-10 89.2 22.6 199 420-622 1455-1665(1710)
105 KOG3617 WD40 and TPR repeat-co 98.5 0.0005 1.1E-08 74.1 31.4 331 219-615 809-1169(1416)
106 KOG4340 Uncharacterized conser 98.5 0.00025 5.5E-09 67.4 25.9 372 213-619 47-442 (459)
107 PLN02789 farnesyltranstransfer 98.5 5.4E-05 1.2E-09 76.9 23.5 217 366-604 33-268 (320)
108 PF12854 PPR_1: PPR repeat 98.4 2.1E-07 4.5E-12 59.0 3.6 33 104-136 2-34 (34)
109 PF12854 PPR_1: PPR repeat 98.4 4E-07 8.6E-12 57.7 4.5 32 520-551 2-33 (34)
110 KOG1127 TPR repeat-containing 98.4 8E-05 1.7E-09 81.9 24.2 387 205-616 486-909 (1238)
111 KOG0548 Molecular co-chaperone 98.4 0.00098 2.1E-08 69.0 30.8 167 429-604 304-473 (539)
112 cd05804 StaR_like StaR_like; a 98.4 0.00033 7.2E-09 73.9 29.0 193 393-586 119-336 (355)
113 PRK04841 transcriptional regul 98.4 0.00017 3.8E-09 86.4 29.5 323 288-621 386-761 (903)
114 PRK10370 formate-dependent nit 98.4 4.3E-05 9.4E-10 72.2 18.5 157 430-597 23-184 (198)
115 PRK15179 Vi polysaccharide bio 98.3 6E-05 1.3E-09 84.4 21.5 132 485-619 82-216 (694)
116 TIGR03302 OM_YfiO outer membra 98.3 5.9E-05 1.3E-09 74.3 19.0 182 386-588 31-234 (235)
117 KOG1128 Uncharacterized conser 98.3 1.6E-05 3.5E-10 84.6 15.4 189 418-621 393-583 (777)
118 COG5010 TadD Flp pilus assembl 98.3 6.4E-05 1.4E-09 70.7 17.5 117 495-613 106-224 (257)
119 KOG1914 mRNA cleavage and poly 98.3 0.0082 1.8E-07 62.3 35.7 147 369-517 347-500 (656)
120 KOG4340 Uncharacterized conser 98.3 5.9E-05 1.3E-09 71.6 16.9 301 279-616 13-335 (459)
121 COG4783 Putative Zn-dependent 98.3 0.00033 7.2E-09 71.7 23.4 119 498-618 315-435 (484)
122 KOG1128 Uncharacterized conser 98.2 2.2E-05 4.7E-10 83.6 14.9 184 307-517 394-581 (777)
123 TIGR02552 LcrH_SycD type III s 98.2 3.5E-05 7.5E-10 68.3 13.8 96 525-620 17-114 (135)
124 KOG1070 rRNA processing protei 98.2 0.00035 7.6E-09 79.7 23.8 233 385-618 1454-1698(1710)
125 PLN02789 farnesyltranstransfer 98.2 0.00024 5.2E-09 72.2 20.7 188 428-618 42-248 (320)
126 COG5010 TadD Flp pilus assembl 98.2 5.5E-05 1.2E-09 71.1 14.5 134 485-620 62-197 (257)
127 KOG1125 TPR repeat-containing 98.1 8.3E-05 1.8E-09 77.3 16.1 215 287-517 296-526 (579)
128 KOG0624 dsRNA-activated protei 98.1 0.0025 5.4E-08 62.1 24.5 214 423-664 38-273 (504)
129 TIGR00756 PPR pentatricopeptid 98.1 4.7E-06 1E-10 53.7 4.4 35 242-276 1-35 (35)
130 TIGR00756 PPR pentatricopeptid 98.1 5.4E-06 1.2E-10 53.5 4.5 35 455-489 1-35 (35)
131 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 6E-05 1.3E-09 78.0 13.9 122 492-618 172-295 (395)
132 PRK15179 Vi polysaccharide bio 98.1 0.00061 1.3E-08 76.5 22.8 133 453-589 85-220 (694)
133 KOG2053 Mitochondrial inherita 98.1 0.035 7.5E-07 61.5 37.3 170 391-564 439-620 (932)
134 COG4783 Putative Zn-dependent 98.0 0.0012 2.6E-08 67.8 22.0 138 462-621 314-455 (484)
135 KOG3060 Uncharacterized conser 98.0 0.0015 3.2E-08 61.2 19.9 167 428-597 57-231 (289)
136 PRK14720 transcript cleavage f 98.0 0.00064 1.4E-08 77.1 20.8 198 384-602 26-268 (906)
137 TIGR02552 LcrH_SycD type III s 97.9 0.00024 5.1E-09 62.9 13.8 114 476-593 5-121 (135)
138 PF13812 PPR_3: Pentatricopept 97.9 1.4E-05 3E-10 51.1 4.2 34 241-274 1-34 (34)
139 PF13812 PPR_3: Pentatricopept 97.9 1.9E-05 4.1E-10 50.4 4.5 33 455-487 2-34 (34)
140 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00045 9.7E-09 71.7 15.9 127 425-555 171-298 (395)
141 PLN03088 SGT1, suppressor of 97.9 0.00018 4E-09 74.9 13.1 97 499-597 12-110 (356)
142 KOG1914 mRNA cleavage and poly 97.8 0.056 1.2E-06 56.4 36.1 210 405-617 310-536 (656)
143 PF09976 TPR_21: Tetratricopep 97.8 0.00061 1.3E-08 61.0 14.4 114 502-616 24-143 (145)
144 KOG3081 Vesicle coat complex C 97.8 0.0038 8.3E-08 59.0 19.4 154 430-590 115-275 (299)
145 KOG0553 TPR repeat-containing 97.8 0.00014 3.1E-09 69.8 9.9 111 472-597 76-189 (304)
146 KOG3060 Uncharacterized conser 97.8 0.0035 7.6E-08 58.8 18.4 160 457-620 55-220 (289)
147 PF12895 Apc3: Anaphase-promot 97.8 3.6E-05 7.8E-10 61.5 4.6 78 538-616 2-83 (84)
148 cd00189 TPR Tetratricopeptide 97.7 0.0003 6.4E-09 57.3 10.1 92 528-619 3-96 (100)
149 PRK14720 transcript cleavage f 97.7 0.013 2.8E-07 66.8 25.8 237 240-568 30-268 (906)
150 PF01535 PPR: PPR repeat; Int 97.7 4.2E-05 9.2E-10 47.6 3.5 31 242-272 1-31 (31)
151 PRK10153 DNA-binding transcrip 97.7 0.0019 4.1E-08 70.4 18.2 140 451-592 334-488 (517)
152 PF01535 PPR: PPR repeat; Int 97.7 5E-05 1.1E-09 47.2 3.5 31 455-485 1-31 (31)
153 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.00084 1.8E-08 57.7 12.4 101 493-593 6-112 (119)
154 PRK15331 chaperone protein Sic 97.6 0.001 2.2E-08 58.8 12.2 90 530-619 42-133 (165)
155 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.00061 1.3E-08 58.6 11.0 96 526-621 3-106 (119)
156 PRK02603 photosystem I assembl 97.6 0.0015 3.3E-08 60.5 14.1 129 455-606 36-166 (172)
157 PF13414 TPR_11: TPR repeat; P 97.6 0.00012 2.7E-09 55.8 5.7 64 556-619 2-66 (69)
158 PF09976 TPR_21: Tetratricopep 97.6 0.0039 8.5E-08 55.8 15.9 125 457-583 15-144 (145)
159 KOG3081 Vesicle coat complex C 97.6 0.01 2.2E-07 56.2 18.5 148 461-618 115-269 (299)
160 COG3898 Uncharacterized membra 97.6 0.1 2.2E-06 52.4 26.0 248 366-629 133-399 (531)
161 PLN03088 SGT1, suppressor of 97.5 0.0012 2.5E-08 68.9 13.5 103 460-567 8-113 (356)
162 KOG0553 TPR repeat-containing 97.5 0.00068 1.5E-08 65.3 10.4 96 462-562 89-187 (304)
163 CHL00033 ycf3 photosystem I as 97.5 0.00086 1.9E-08 61.9 11.0 94 524-617 34-139 (168)
164 PRK02603 photosystem I assembl 97.5 0.0012 2.7E-08 61.1 11.5 82 525-606 35-121 (172)
165 PF13432 TPR_16: Tetratricopep 97.5 0.0003 6.4E-09 52.9 5.9 57 563-619 3-59 (65)
166 PF13432 TPR_16: Tetratricopep 97.5 0.00035 7.6E-09 52.5 6.2 61 531-591 3-65 (65)
167 KOG2053 Mitochondrial inherita 97.5 0.3 6.5E-06 54.4 39.9 217 50-271 20-256 (932)
168 PF14559 TPR_19: Tetratricopep 97.4 0.00037 8E-09 53.0 6.0 52 568-619 2-53 (68)
169 cd00189 TPR Tetratricopeptide 97.4 0.0021 4.5E-08 52.1 10.9 88 499-588 10-99 (100)
170 COG4235 Cytochrome c biogenesi 97.4 0.002 4.4E-08 62.5 11.3 102 522-623 153-259 (287)
171 PF05843 Suf: Suppressor of fo 97.4 0.0059 1.3E-07 61.3 15.3 143 455-601 2-150 (280)
172 KOG1538 Uncharacterized conser 97.3 0.031 6.6E-07 59.3 20.1 125 429-585 709-845 (1081)
173 KOG0550 Molecular chaperone (D 97.3 0.0036 7.8E-08 62.8 12.6 160 455-620 169-350 (486)
174 PF14559 TPR_19: Tetratricopep 97.2 0.00042 9.2E-09 52.6 4.3 61 537-597 3-65 (68)
175 PF04840 Vps16_C: Vps16, C-ter 97.2 0.33 7.1E-06 49.4 28.5 118 430-567 184-301 (319)
176 PF12895 Apc3: Anaphase-promot 97.2 0.0011 2.5E-08 52.7 6.6 80 467-550 2-83 (84)
177 PF13414 TPR_11: TPR repeat; P 97.2 0.00076 1.7E-08 51.4 5.2 65 524-588 2-69 (69)
178 CHL00033 ycf3 photosystem I as 97.1 0.0093 2E-07 54.9 12.7 63 455-517 36-100 (168)
179 KOG2041 WD40 repeat protein [G 97.1 0.41 8.9E-06 51.7 25.5 144 430-584 930-1084(1189)
180 PF13371 TPR_9: Tetratricopept 97.1 0.0013 2.8E-08 50.8 5.9 56 565-620 3-58 (73)
181 PF14938 SNAP: Soluble NSF att 97.0 0.042 9.1E-07 55.5 17.8 116 459-589 99-228 (282)
182 PF13431 TPR_17: Tetratricopep 97.0 0.00042 9.2E-09 43.8 1.9 32 580-611 2-33 (34)
183 KOG1130 Predicted G-alpha GTPa 97.0 0.0046 1E-07 61.8 9.7 258 361-618 25-342 (639)
184 COG4700 Uncharacterized protei 97.0 0.12 2.6E-06 46.3 17.1 132 485-618 85-220 (251)
185 COG3898 Uncharacterized membra 97.0 0.49 1.1E-05 47.7 23.1 243 366-617 97-355 (531)
186 KOG1538 Uncharacterized conser 96.9 0.11 2.4E-06 55.3 19.6 199 178-451 601-801 (1081)
187 COG4700 Uncharacterized protei 96.9 0.023 5E-07 50.7 12.4 106 514-619 78-188 (251)
188 PRK10866 outer membrane biogen 96.9 0.099 2.1E-06 51.2 18.4 173 429-618 38-239 (243)
189 PF13281 DUF4071: Domain of un 96.9 0.14 2.9E-06 52.7 19.4 160 428-590 146-338 (374)
190 PRK10153 DNA-binding transcrip 96.9 0.037 8E-07 60.5 16.5 134 484-621 332-483 (517)
191 PF12688 TPR_5: Tetratrico pep 96.9 0.012 2.7E-07 49.9 10.1 85 532-616 8-100 (120)
192 PF10037 MRP-S27: Mitochondria 96.8 0.017 3.6E-07 60.5 12.9 82 243-324 105-186 (429)
193 PF13371 TPR_9: Tetratricopept 96.8 0.0042 9.1E-08 47.8 6.6 65 532-596 2-68 (73)
194 PF10037 MRP-S27: Mitochondria 96.8 0.015 3.2E-07 60.9 12.4 120 418-538 61-186 (429)
195 PRK15363 pathogenicity island 96.8 0.042 9E-07 48.5 13.3 93 427-520 39-134 (157)
196 PF05843 Suf: Suppressor of fo 96.8 0.016 3.5E-07 58.2 12.5 129 490-620 2-136 (280)
197 PF06239 ECSIT: Evolutionarily 96.8 0.024 5.1E-07 52.5 12.1 105 385-504 44-153 (228)
198 PF06239 ECSIT: Evolutionarily 96.7 0.018 3.8E-07 53.3 10.7 97 443-540 34-153 (228)
199 PLN03098 LPA1 LOW PSII ACCUMUL 96.7 0.0053 1.1E-07 63.5 8.2 63 557-619 75-140 (453)
200 KOG2280 Vacuolar assembly/sort 96.7 1.4 2.9E-05 48.5 28.7 337 169-549 426-794 (829)
201 PRK10803 tol-pal system protei 96.7 0.012 2.5E-07 58.1 10.1 93 527-619 145-245 (263)
202 KOG2041 WD40 repeat protein [G 96.7 0.17 3.8E-06 54.4 18.7 32 308-339 689-720 (1189)
203 PF08579 RPM2: Mitochondrial r 96.6 0.031 6.8E-07 45.7 10.3 81 456-537 27-116 (120)
204 PF14938 SNAP: Soluble NSF att 96.6 0.24 5.2E-06 50.0 19.7 138 425-575 96-252 (282)
205 KOG0543 FKBP-type peptidyl-pro 96.6 0.023 5.1E-07 57.4 11.7 83 558-666 258-340 (397)
206 PF04840 Vps16_C: Vps16, C-ter 96.6 0.99 2.1E-05 46.0 24.5 104 315-445 181-284 (319)
207 PF08579 RPM2: Mitochondrial r 96.6 0.022 4.8E-07 46.6 9.0 80 244-323 28-116 (120)
208 PF12688 TPR_5: Tetratrico pep 96.6 0.047 1E-06 46.4 11.6 91 460-550 7-100 (120)
209 PF13428 TPR_14: Tetratricopep 96.6 0.0041 8.9E-08 42.2 4.2 42 558-599 2-43 (44)
210 KOG1130 Predicted G-alpha GTPa 96.5 0.061 1.3E-06 54.1 13.7 152 456-607 197-371 (639)
211 PF09205 DUF1955: Domain of un 96.4 0.25 5.4E-06 41.7 14.2 140 465-623 13-152 (161)
212 PRK10803 tol-pal system protei 96.4 0.067 1.4E-06 52.8 13.1 100 492-591 146-251 (263)
213 KOG2796 Uncharacterized conser 96.1 0.41 8.8E-06 45.6 15.5 137 458-594 181-323 (366)
214 KOG2796 Uncharacterized conser 96.0 0.33 7.3E-06 46.1 14.9 126 366-493 190-323 (366)
215 PF13424 TPR_12: Tetratricopep 96.0 0.011 2.5E-07 46.1 4.7 24 527-550 7-30 (78)
216 PF12921 ATP13: Mitochondrial 96.0 0.094 2E-06 45.1 10.3 51 520-570 47-101 (126)
217 COG0457 NrfG FOG: TPR repeat [ 95.9 1.8 3.8E-05 41.6 27.1 195 423-619 59-264 (291)
218 PF03704 BTAD: Bacterial trans 95.9 0.083 1.8E-06 47.2 10.3 106 500-619 17-124 (146)
219 COG4235 Cytochrome c biogenesi 95.9 0.29 6.3E-06 47.9 14.3 102 488-591 155-261 (287)
220 KOG4555 TPR repeat-containing 95.7 0.062 1.3E-06 45.0 7.8 90 533-622 51-146 (175)
221 PRK11906 transcriptional regul 95.7 0.18 3.8E-06 52.7 12.9 134 455-590 252-405 (458)
222 KOG1258 mRNA processing protei 95.7 3.9 8.5E-05 44.1 34.0 183 421-608 295-492 (577)
223 PF13424 TPR_12: Tetratricopep 95.6 0.016 3.4E-07 45.3 4.1 63 557-619 5-74 (78)
224 PRK10866 outer membrane biogen 95.5 0.82 1.8E-05 44.8 16.5 52 118-169 41-98 (243)
225 PRK11906 transcriptional regul 95.4 2.2 4.7E-05 44.9 19.6 118 504-621 273-402 (458)
226 PF07079 DUF1347: Protein of u 95.4 4 8.6E-05 42.4 36.4 73 545-618 444-522 (549)
227 KOG2280 Vacuolar assembly/sort 95.4 5.6 0.00012 44.0 26.7 113 488-616 683-795 (829)
228 PF13525 YfiO: Outer membrane 95.4 1.5 3.2E-05 41.8 17.4 163 431-612 13-199 (203)
229 PF13525 YfiO: Outer membrane 95.4 1.2 2.6E-05 42.4 16.7 140 460-619 11-169 (203)
230 KOG0550 Molecular chaperone (D 95.3 4 8.6E-05 41.9 22.0 157 389-551 169-347 (486)
231 PF12921 ATP13: Mitochondrial 95.3 0.22 4.9E-06 42.7 10.3 98 423-536 2-99 (126)
232 PLN03098 LPA1 LOW PSII ACCUMUL 95.2 0.12 2.5E-06 53.9 9.7 64 524-587 74-142 (453)
233 COG0457 NrfG FOG: TPR repeat [ 95.2 3.1 6.8E-05 39.8 25.9 218 368-589 38-268 (291)
234 KOG1585 Protein required for f 95.1 3 6.4E-05 39.6 17.2 199 391-614 34-250 (308)
235 PF13512 TPR_18: Tetratricopep 95.0 0.47 1E-05 41.3 11.3 58 535-592 20-82 (142)
236 KOG0543 FKBP-type peptidyl-pro 94.9 0.31 6.6E-06 49.7 11.4 138 461-620 215-355 (397)
237 KOG2114 Vacuolar assembly/sort 94.8 8.6 0.00019 43.2 25.0 166 52-239 347-519 (933)
238 KOG3941 Intermediate in Toll s 94.8 0.26 5.6E-06 47.3 9.9 99 442-541 53-174 (406)
239 KOG1941 Acetylcholine receptor 94.3 0.98 2.1E-05 45.1 12.8 117 495-611 128-266 (518)
240 COG1729 Uncharacterized protei 94.2 0.32 6.9E-06 47.0 9.2 57 563-619 184-243 (262)
241 KOG1920 IkappaB kinase complex 94.1 10 0.00023 44.3 22.1 94 318-451 959-1054(1265)
242 PF03704 BTAD: Bacterial trans 94.1 0.55 1.2E-05 41.9 10.3 70 457-527 65-138 (146)
243 PF07719 TPR_2: Tetratricopept 94.0 0.12 2.6E-06 32.4 4.2 33 558-590 2-34 (34)
244 PF00515 TPR_1: Tetratricopept 94.0 0.087 1.9E-06 33.1 3.5 32 558-589 2-33 (34)
245 PF10300 DUF3808: Protein of u 93.8 2.6 5.6E-05 45.9 16.7 115 502-619 246-375 (468)
246 COG4105 ComL DNA uptake lipopr 93.8 6.8 0.00015 37.8 17.1 165 435-619 46-232 (254)
247 KOG2610 Uncharacterized conser 93.7 0.64 1.4E-05 45.9 10.3 159 466-627 115-283 (491)
248 PF04184 ST7: ST7 protein; In 93.6 1.1 2.4E-05 47.0 12.5 152 467-630 181-334 (539)
249 PF13512 TPR_18: Tetratricopep 93.6 2.5 5.4E-05 36.9 12.7 91 500-591 21-133 (142)
250 KOG2066 Vacuolar assembly/sort 93.6 15 0.00032 41.1 24.0 48 212-259 394-441 (846)
251 KOG3941 Intermediate in Toll s 93.5 0.75 1.6E-05 44.3 10.2 112 228-339 52-187 (406)
252 COG4105 ComL DNA uptake lipopr 93.5 7.6 0.00016 37.5 17.5 28 593-620 169-196 (254)
253 PF04097 Nic96: Nup93/Nic96; 93.5 13 0.00027 42.2 21.9 70 140-211 112-188 (613)
254 KOG2610 Uncharacterized conser 93.4 1.8 3.9E-05 42.9 12.6 175 435-613 115-308 (491)
255 smart00299 CLH Clathrin heavy 93.3 3.1 6.7E-05 36.7 13.7 22 494-515 74-95 (140)
256 PRK15331 chaperone protein Sic 93.3 1.9 4E-05 38.6 11.6 90 498-590 46-137 (165)
257 KOG4234 TPR repeat-containing 93.2 0.54 1.2E-05 42.8 8.2 90 533-622 103-199 (271)
258 KOG2114 Vacuolar assembly/sort 93.1 18 0.0004 40.8 27.0 118 112-237 337-458 (933)
259 COG1729 Uncharacterized protei 93.1 0.99 2.1E-05 43.7 10.6 86 466-551 153-241 (262)
260 KOG1920 IkappaB kinase complex 93.1 11 0.00023 44.3 20.0 107 435-552 920-1026(1265)
261 smart00299 CLH Clathrin heavy 93.0 5.2 0.00011 35.2 14.7 74 190-267 22-95 (140)
262 COG3118 Thioredoxin domain-con 92.8 3 6.5E-05 40.9 13.3 120 498-620 143-265 (304)
263 COG3118 Thioredoxin domain-con 92.7 11 0.00024 37.1 17.2 154 461-617 141-299 (304)
264 PF04053 Coatomer_WDAD: Coatom 92.6 1.6 3.5E-05 46.7 12.5 130 465-620 272-402 (443)
265 PF04184 ST7: ST7 protein; In 92.6 15 0.00032 39.1 18.6 98 494-591 264-380 (539)
266 PF04097 Nic96: Nup93/Nic96; 92.4 23 0.0005 40.1 22.1 80 366-450 271-354 (613)
267 PF07079 DUF1347: Protein of u 92.3 16 0.00036 38.1 36.6 120 438-562 395-530 (549)
268 PF08631 SPO22: Meiosis protei 92.2 14 0.0003 37.1 20.7 121 366-488 48-191 (278)
269 KOG1941 Acetylcholine receptor 91.9 5.8 0.00013 39.9 14.1 221 366-586 19-275 (518)
270 PF13428 TPR_14: Tetratricopep 91.5 0.43 9.3E-06 32.2 4.4 37 527-563 3-41 (44)
271 KOG4555 TPR repeat-containing 91.4 1.6 3.5E-05 36.9 8.3 53 464-517 53-105 (175)
272 PF10300 DUF3808: Protein of u 90.9 2.9 6.3E-05 45.4 12.4 128 493-620 192-334 (468)
273 PF04053 Coatomer_WDAD: Coatom 90.8 5.1 0.00011 43.0 13.9 157 149-337 270-428 (443)
274 COG4785 NlpI Lipoprotein NlpI, 90.2 15 0.00033 34.3 14.1 158 454-619 99-265 (297)
275 PF02259 FAT: FAT domain; Int 90.2 16 0.00035 38.1 17.3 67 556-622 145-215 (352)
276 PRK09687 putative lyase; Provi 90.1 22 0.00048 35.7 24.4 74 309-398 204-277 (280)
277 PRK09687 putative lyase; Provi 89.9 23 0.00049 35.5 25.2 80 422-504 141-221 (280)
278 PF13281 DUF4071: Domain of un 89.7 28 0.0006 36.2 19.8 168 366-557 154-338 (374)
279 PF13181 TPR_8: Tetratricopept 89.6 0.5 1.1E-05 29.5 3.2 31 559-589 3-33 (34)
280 COG3629 DnrI DNA-binding trans 89.4 2.5 5.5E-05 41.7 9.3 76 423-498 153-236 (280)
281 PF09613 HrpB1_HrpK: Bacterial 89.3 13 0.00028 33.2 12.8 90 497-589 18-109 (160)
282 PF13176 TPR_7: Tetratricopept 89.1 0.56 1.2E-05 29.9 3.2 25 560-584 2-26 (36)
283 PF07035 Mic1: Colon cancer-as 88.9 10 0.00022 34.3 12.1 133 59-203 14-148 (167)
284 KOG3364 Membrane protein invol 88.9 3.4 7.5E-05 35.3 8.4 65 555-619 30-99 (149)
285 PF09205 DUF1955: Domain of un 88.9 14 0.0003 31.6 12.5 81 435-517 68-148 (161)
286 KOG4648 Uncharacterized conser 88.5 1.5 3.3E-05 43.4 7.0 90 498-590 106-198 (536)
287 PF02259 FAT: FAT domain; Int 88.5 34 0.00074 35.6 18.2 148 453-603 145-304 (352)
288 PF13170 DUF4003: Protein of u 88.1 7.3 0.00016 39.3 12.0 64 470-534 159-226 (297)
289 PF13176 TPR_7: Tetratricopept 87.8 1.3 2.8E-05 28.2 4.3 26 456-481 1-26 (36)
290 PRK10941 hypothetical protein; 87.6 3.3 7.2E-05 41.0 8.9 60 560-619 184-243 (269)
291 KOG0890 Protein kinase of the 87.0 1.1E+02 0.0023 39.6 29.8 64 557-622 1670-1733(2382)
292 PF10345 Cohesin_load: Cohesin 87.0 61 0.0013 36.9 34.1 49 570-618 547-604 (608)
293 PF14853 Fis1_TPR_C: Fis1 C-te 86.9 3.4 7.3E-05 29.1 6.2 51 593-669 3-53 (53)
294 KOG1586 Protein required for f 85.8 28 0.00062 33.1 13.2 62 530-591 118-188 (288)
295 PF10602 RPN7: 26S proteasome 85.7 18 0.00039 33.4 12.3 56 425-480 38-99 (177)
296 PRK15180 Vi polysaccharide bio 85.6 6.6 0.00014 40.9 9.9 120 466-589 301-423 (831)
297 PF07035 Mic1: Colon cancer-as 84.9 28 0.00061 31.5 12.6 134 160-305 14-149 (167)
298 COG2976 Uncharacterized protei 84.8 33 0.00071 31.8 13.7 90 496-589 96-191 (207)
299 PF13170 DUF4003: Protein of u 84.8 8.4 0.00018 38.9 10.4 61 370-430 160-224 (297)
300 PF00515 TPR_1: Tetratricopept 84.4 2.4 5.2E-05 26.3 4.2 27 456-482 3-29 (34)
301 TIGR02508 type_III_yscG type I 84.4 11 0.00024 30.3 8.5 87 89-179 20-106 (115)
302 PF09613 HrpB1_HrpK: Bacterial 83.8 3.8 8.3E-05 36.5 6.5 70 537-606 22-93 (160)
303 PF10602 RPN7: 26S proteasome 83.5 16 0.00036 33.6 11.0 95 455-551 37-139 (177)
304 COG4649 Uncharacterized protei 83.3 17 0.00037 32.8 10.1 119 222-340 70-196 (221)
305 KOG1585 Protein required for f 82.5 48 0.001 31.9 14.2 78 527-617 93-176 (308)
306 TIGR02561 HrpB1_HrpK type III 82.2 6.4 0.00014 34.5 7.1 51 570-620 23-73 (153)
307 cd00923 Cyt_c_Oxidase_Va Cytoc 81.9 9.6 0.00021 30.5 7.3 63 469-533 22-84 (103)
308 PF14853 Fis1_TPR_C: Fis1 C-te 81.8 3.3 7.1E-05 29.2 4.3 33 562-594 6-38 (53)
309 KOG1464 COP9 signalosome, subu 81.4 55 0.0012 31.8 15.3 258 325-599 41-345 (440)
310 TIGR02508 type_III_yscG type I 81.3 27 0.00058 28.2 9.7 86 405-494 22-107 (115)
311 KOG4570 Uncharacterized conser 81.3 7.9 0.00017 38.2 8.1 102 103-205 58-165 (418)
312 COG3629 DnrI DNA-binding trans 81.2 6.3 0.00014 39.0 7.6 57 562-618 158-214 (280)
313 COG3947 Response regulator con 80.8 61 0.0013 32.0 15.4 59 561-619 283-341 (361)
314 COG5107 RNA14 Pre-mRNA 3'-end 80.5 81 0.0018 33.2 32.4 133 454-590 397-535 (660)
315 PF07719 TPR_2: Tetratricopept 80.4 2.5 5.4E-05 26.1 3.2 28 592-619 2-29 (34)
316 COG5107 RNA14 Pre-mRNA 3'-end 80.0 84 0.0018 33.1 31.4 143 423-570 397-548 (660)
317 PRK15180 Vi polysaccharide bio 79.9 12 0.00026 39.2 9.2 129 435-566 301-434 (831)
318 KOG0276 Vesicle coat complex C 79.9 30 0.00065 37.6 12.3 148 436-617 599-747 (794)
319 COG4785 NlpI Lipoprotein NlpI, 79.7 5.6 0.00012 37.1 6.2 99 501-605 77-178 (297)
320 COG1747 Uncharacterized N-term 79.5 94 0.002 33.4 16.3 160 241-418 66-235 (711)
321 PF00637 Clathrin: Region in C 79.0 1.7 3.6E-05 38.6 2.8 85 80-167 13-97 (143)
322 PF02284 COX5A: Cytochrome c o 78.8 13 0.00028 30.1 7.2 61 471-533 27-87 (108)
323 KOG4648 Uncharacterized conser 78.4 10 0.00022 37.9 7.9 86 461-557 104-198 (536)
324 PF11207 DUF2989: Protein of u 77.9 11 0.00025 34.9 7.7 75 536-611 118-198 (203)
325 smart00028 TPR Tetratricopepti 77.7 4.1 8.9E-05 24.0 3.7 30 560-589 4-33 (34)
326 PF00637 Clathrin: Region in C 77.2 1.8 4E-05 38.3 2.5 85 181-268 13-97 (143)
327 KOG0376 Serine-threonine phosp 77.2 4 8.7E-05 42.8 5.1 86 534-619 13-100 (476)
328 PF13174 TPR_6: Tetratricopept 76.9 3.7 7.9E-05 25.1 3.2 27 563-589 6-32 (33)
329 PRK11619 lytic murein transgly 76.6 1.5E+02 0.0032 34.0 30.7 125 467-598 254-383 (644)
330 COG4455 ImpE Protein of avirul 76.5 7.2 0.00016 36.5 5.9 63 529-591 5-69 (273)
331 PF07721 TPR_4: Tetratricopept 76.5 3.9 8.5E-05 23.7 2.9 24 592-615 2-25 (26)
332 PF06552 TOM20_plant: Plant sp 76.3 8.8 0.00019 34.9 6.3 46 573-618 51-100 (186)
333 KOG1550 Extracellular protein 76.2 96 0.0021 34.8 16.1 116 504-623 308-429 (552)
334 TIGR02561 HrpB1_HrpK type III 75.7 29 0.00064 30.5 9.1 84 500-587 21-107 (153)
335 KOG4570 Uncharacterized conser 75.7 21 0.00045 35.5 9.1 101 205-306 59-165 (418)
336 cd00923 Cyt_c_Oxidase_Va Cytoc 75.6 25 0.00053 28.3 7.8 62 54-117 22-84 (103)
337 PF13431 TPR_17: Tetratricopep 75.5 4.3 9.4E-05 25.4 3.1 30 99-129 4-33 (34)
338 KOG0545 Aryl-hydrocarbon recep 75.2 43 0.00092 32.2 10.6 55 565-619 238-292 (329)
339 PF04910 Tcf25: Transcriptiona 74.9 38 0.00082 35.4 11.7 95 525-619 40-167 (360)
340 PF13374 TPR_10: Tetratricopep 74.8 5.4 0.00012 25.9 3.8 26 559-584 4-29 (42)
341 PF13374 TPR_10: Tetratricopep 74.6 6.9 0.00015 25.4 4.3 28 455-482 3-30 (42)
342 KOG1550 Extracellular protein 73.5 1.6E+02 0.0035 33.0 20.1 244 366-619 262-537 (552)
343 PF13181 TPR_8: Tetratricopept 73.3 6 0.00013 24.4 3.5 28 592-619 2-29 (34)
344 KOG4234 TPR repeat-containing 72.7 40 0.00087 31.2 9.5 59 532-590 141-201 (271)
345 PF09986 DUF2225: Uncharacteri 72.2 14 0.0003 35.3 7.1 64 557-620 118-194 (214)
346 KOG1308 Hsp70-interacting prot 71.7 2.1 4.5E-05 42.7 1.5 87 538-624 127-215 (377)
347 PRK12798 chemotaxis protein; R 71.3 1.4E+02 0.003 31.4 21.6 179 436-617 125-321 (421)
348 COG1747 Uncharacterized N-term 71.3 1.5E+02 0.0033 31.9 22.2 168 420-594 63-242 (711)
349 PF13929 mRNA_stabil: mRNA sta 71.2 45 0.00098 33.0 10.3 109 470-578 144-259 (292)
350 KOG1464 COP9 signalosome, subu 70.9 52 0.0011 31.9 10.3 183 436-618 40-259 (440)
351 PF06552 TOM20_plant: Plant sp 70.8 21 0.00046 32.5 7.4 44 573-623 96-139 (186)
352 PF02284 COX5A: Cytochrome c o 70.3 23 0.00049 28.8 6.6 48 550-597 38-85 (108)
353 KOG1258 mRNA processing protei 68.5 1.9E+02 0.0041 31.8 25.7 136 212-348 47-188 (577)
354 PF13174 TPR_6: Tetratricopept 68.1 5.3 0.00012 24.3 2.4 28 593-620 2-29 (33)
355 PHA02875 ankyrin repeat protei 66.8 1.8E+02 0.004 31.0 17.8 200 60-276 16-230 (413)
356 KOG0403 Neoplastic transformat 65.8 1.8E+02 0.004 30.7 15.9 321 144-485 218-574 (645)
357 PF09477 Type_III_YscG: Bacter 65.6 76 0.0016 26.2 9.2 82 86-170 18-99 (116)
358 PF13762 MNE1: Mitochondrial s 64.3 65 0.0014 28.4 9.0 51 138-188 77-128 (145)
359 KOG4642 Chaperone-dependent E3 63.7 19 0.00041 34.3 5.8 57 561-617 48-104 (284)
360 KOG2066 Vacuolar assembly/sort 63.7 2.7E+02 0.0058 31.8 23.2 24 246-269 510-533 (846)
361 PF11207 DUF2989: Protein of u 63.7 61 0.0013 30.3 9.1 21 524-544 177-197 (203)
362 KOG0292 Vesicle coat complex C 63.3 12 0.00027 42.2 5.3 119 467-617 606-724 (1202)
363 PF04190 DUF410: Protein of un 63.2 1.5E+02 0.0033 29.3 12.6 105 222-337 2-116 (260)
364 PF08631 SPO22: Meiosis protei 62.9 1.7E+02 0.0037 29.3 24.5 17 366-382 6-22 (278)
365 PF14561 TPR_20: Tetratricopep 62.6 15 0.00033 29.3 4.5 44 577-620 8-51 (90)
366 COG4455 ImpE Protein of avirul 62.5 37 0.00081 31.9 7.4 76 456-533 3-80 (273)
367 COG3947 Response regulator con 62.1 1.7E+02 0.0038 29.1 14.1 55 529-583 283-339 (361)
368 KOG4279 Serine/threonine prote 62.0 1.3E+02 0.0028 34.0 12.3 194 370-590 180-399 (1226)
369 KOG3807 Predicted membrane pro 61.6 1.1E+02 0.0024 30.8 10.8 51 463-515 284-337 (556)
370 KOG0276 Vesicle coat complex C 61.1 90 0.0019 34.2 10.8 163 139-337 580-747 (794)
371 PRK10941 hypothetical protein; 59.1 65 0.0014 32.0 9.1 68 528-595 184-253 (269)
372 KOG1586 Protein required for f 58.4 1.8E+02 0.0039 28.0 15.6 99 503-601 128-241 (288)
373 COG4649 Uncharacterized protei 58.4 1.5E+02 0.0032 27.1 15.8 121 464-585 68-195 (221)
374 COG4976 Predicted methyltransf 58.3 18 0.00039 34.2 4.7 57 534-590 4-62 (287)
375 PF10579 Rapsyn_N: Rapsyn N-te 57.6 28 0.0006 26.8 4.8 47 501-547 18-65 (80)
376 PF11768 DUF3312: Protein of u 56.8 1.2E+02 0.0026 33.1 11.0 23 428-450 413-435 (545)
377 PF06957 COPI_C: Coatomer (COP 56.8 55 0.0012 34.7 8.5 39 552-590 293-333 (422)
378 PF09477 Type_III_YscG: Bacter 56.5 1.1E+02 0.0025 25.2 9.3 79 403-484 21-99 (116)
379 PF09670 Cas_Cas02710: CRISPR- 56.1 1.7E+02 0.0036 31.0 12.2 53 464-517 141-197 (379)
380 PF14863 Alkyl_sulf_dimr: Alky 55.5 43 0.00093 29.4 6.4 67 541-610 57-123 (141)
381 KOG0551 Hsp90 co-chaperone CNS 55.3 54 0.0012 33.0 7.6 90 528-617 84-179 (390)
382 PF07163 Pex26: Pex26 protein; 55.2 1.3E+02 0.0027 29.8 9.9 87 461-550 90-183 (309)
383 PF13934 ELYS: Nuclear pore co 55.0 2E+02 0.0044 27.7 12.6 106 457-571 79-186 (226)
384 PF14561 TPR_20: Tetratricopep 54.9 92 0.002 24.9 7.8 62 556-617 21-85 (90)
385 PF13762 MNE1: Mitochondrial s 54.2 1.6E+02 0.0034 26.1 10.4 47 455-501 80-127 (145)
386 PHA02875 ankyrin repeat protei 53.7 2.6E+02 0.0057 29.8 13.8 77 151-235 10-90 (413)
387 KOG4507 Uncharacterized conser 53.5 42 0.00091 36.4 7.0 100 500-602 618-721 (886)
388 COG2976 Uncharacterized protei 52.9 2E+02 0.0043 26.9 10.8 88 397-484 98-189 (207)
389 PF04910 Tcf25: Transcriptiona 52.6 3E+02 0.0064 28.8 17.8 97 488-589 99-225 (360)
390 smart00386 HAT HAT (Half-A-TPR 52.5 24 0.00052 21.0 3.4 29 571-599 1-29 (33)
391 KOG4077 Cytochrome c oxidase, 52.0 89 0.0019 26.6 7.2 71 472-553 67-137 (149)
392 COG2909 MalT ATP-dependent tra 51.5 4.6E+02 0.0099 30.7 21.2 215 399-616 426-684 (894)
393 PRK09169 hypothetical protein; 51.0 7.2E+02 0.016 32.8 42.2 365 242-617 247-692 (2316)
394 KOG3364 Membrane protein invol 50.2 78 0.0017 27.4 6.8 70 523-592 30-106 (149)
395 KOG2422 Uncharacterized conser 50.2 2.1E+02 0.0045 31.5 11.3 55 564-618 349-405 (665)
396 PF10579 Rapsyn_N: Rapsyn N-te 49.8 48 0.001 25.6 5.0 47 466-512 18-66 (80)
397 KOG3824 Huntingtin interacting 49.6 28 0.00062 34.3 4.7 57 537-593 128-186 (472)
398 PF11846 DUF3366: Domain of un 49.0 58 0.0013 30.5 6.9 37 552-588 139-175 (193)
399 KOG1498 26S proteasome regulat 48.7 3.4E+02 0.0073 28.3 14.6 108 530-641 136-262 (439)
400 PF11846 DUF3366: Domain of un 48.7 67 0.0015 30.0 7.2 48 504-551 123-170 (193)
401 PF07720 TPR_3: Tetratricopept 48.5 38 0.00083 21.6 3.7 30 560-589 4-35 (36)
402 TIGR03504 FimV_Cterm FimV C-te 46.7 47 0.001 22.4 4.1 23 460-482 5-27 (44)
403 PRK13800 putative oxidoreducta 45.7 6.2E+02 0.013 30.5 26.4 45 106-150 632-676 (897)
404 PF10366 Vps39_1: Vacuolar sor 44.8 1.1E+02 0.0025 25.4 7.1 28 242-269 40-67 (108)
405 PF14669 Asp_Glu_race_2: Putat 44.0 2.7E+02 0.0058 25.9 14.4 98 230-337 96-207 (233)
406 cd08819 CARD_MDA5_2 Caspase ac 43.9 1.3E+02 0.0029 23.8 6.7 66 93-160 21-86 (88)
407 PF07163 Pex26: Pex26 protein; 43.5 1.9E+02 0.0042 28.6 9.2 85 248-334 90-181 (309)
408 COG2909 MalT ATP-dependent tra 43.5 6E+02 0.013 29.7 24.7 87 220-306 425-527 (894)
409 COG5191 Uncharacterized conser 43.2 51 0.0011 32.8 5.4 77 522-598 104-183 (435)
410 PF12862 Apc5: Anaphase-promot 42.9 82 0.0018 25.3 5.9 26 561-586 45-70 (94)
411 TIGR03504 FimV_Cterm FimV C-te 42.8 44 0.00095 22.5 3.5 26 79-104 4-29 (44)
412 cd08819 CARD_MDA5_2 Caspase ac 41.9 1.7E+02 0.0036 23.3 6.9 39 435-474 48-86 (88)
413 COG2912 Uncharacterized conser 41.8 1.7E+02 0.0037 28.9 8.6 59 561-619 185-243 (269)
414 PF12862 Apc5: Anaphase-promot 41.7 59 0.0013 26.1 4.9 52 568-619 9-69 (94)
415 PF13929 mRNA_stabil: mRNA sta 41.6 3.8E+02 0.0081 26.9 14.2 113 224-336 142-263 (292)
416 PF07575 Nucleopor_Nup85: Nup8 41.4 5.6E+02 0.012 28.8 15.6 24 140-164 149-172 (566)
417 PF13934 ELYS: Nuclear pore co 41.2 3.4E+02 0.0073 26.2 11.7 115 435-557 90-204 (226)
418 PF15469 Sec5: Exocyst complex 41.0 2.9E+02 0.0063 25.4 11.6 117 459-597 62-179 (182)
419 PF14689 SPOB_a: Sensor_kinase 40.7 46 0.001 24.4 3.7 23 459-481 28-50 (62)
420 PF11663 Toxin_YhaV: Toxin wit 40.5 37 0.00079 29.3 3.5 32 253-286 107-138 (140)
421 KOG2063 Vacuolar assembly/sort 40.3 7E+02 0.015 29.6 15.3 27 142-168 506-532 (877)
422 KOG4077 Cytochrome c oxidase, 39.9 2.4E+02 0.0052 24.2 8.4 59 57-116 67-125 (149)
423 KOG2063 Vacuolar assembly/sort 39.4 5.8E+02 0.013 30.2 13.7 112 111-223 506-639 (877)
424 PF11663 Toxin_YhaV: Toxin wit 38.9 37 0.00079 29.3 3.2 31 52-84 108-138 (140)
425 PRK10564 maltose regulon perip 38.8 60 0.0013 32.4 5.2 41 456-496 259-299 (303)
426 KOG4642 Chaperone-dependent E3 38.1 3.7E+02 0.008 26.1 9.8 81 433-515 20-104 (284)
427 cd00280 TRFH Telomeric Repeat 37.8 2.4E+02 0.0053 26.0 8.3 28 563-591 117-144 (200)
428 PHA03100 ankyrin repeat protei 37.2 5.8E+02 0.013 27.8 15.4 14 121-134 117-130 (480)
429 PF10366 Vps39_1: Vacuolar sor 36.5 1.8E+02 0.0039 24.2 7.0 40 124-168 28-67 (108)
430 PF04034 DUF367: Domain of unk 35.2 2.4E+02 0.0051 24.2 7.4 59 525-583 66-125 (127)
431 PF15161 Neuropep_like: Neurop 33.9 27 0.00058 24.4 1.4 16 711-727 12-27 (65)
432 COG0790 FOG: TPR repeat, SEL1 33.6 5E+02 0.011 25.9 17.3 98 504-605 128-236 (292)
433 PF11848 DUF3368: Domain of un 33.6 1.2E+02 0.0027 20.7 4.7 33 151-183 13-45 (48)
434 KOG0686 COP9 signalosome, subu 33.4 6E+02 0.013 26.8 14.8 60 423-482 150-215 (466)
435 PF14689 SPOB_a: Sensor_kinase 33.2 86 0.0019 22.9 4.1 30 488-517 22-51 (62)
436 PRK13342 recombination factor 33.2 6.3E+02 0.014 27.0 16.6 114 370-501 154-277 (413)
437 KOG3824 Huntingtin interacting 33.1 73 0.0016 31.7 4.7 51 567-617 126-176 (472)
438 PRK13800 putative oxidoreducta 32.8 9.5E+02 0.021 29.0 25.9 254 231-517 625-880 (897)
439 PRK10564 maltose regulon perip 32.8 68 0.0015 32.0 4.5 39 243-281 259-297 (303)
440 PF14669 Asp_Glu_race_2: Putat 32.7 4.1E+02 0.009 24.7 14.5 92 450-551 103-207 (233)
441 PF11848 DUF3368: Domain of un 32.4 1.7E+02 0.0036 20.1 5.3 33 465-497 13-45 (48)
442 cd08326 CARD_CASP9 Caspase act 30.9 1.3E+02 0.0028 23.7 5.0 62 94-159 19-80 (84)
443 KOG4814 Uncharacterized conser 30.5 5.8E+02 0.013 28.6 11.0 60 560-619 397-456 (872)
444 KOG2659 LisH motif-containing 30.5 4.6E+02 0.01 25.1 9.3 53 496-550 71-128 (228)
445 KOG0991 Replication factor C, 30.4 5.1E+02 0.011 25.1 10.0 53 445-499 230-282 (333)
446 PRK13342 recombination factor 30.1 7.1E+02 0.015 26.6 16.6 36 366-401 243-278 (413)
447 COG2178 Predicted RNA-binding 29.9 4.6E+02 0.01 24.5 9.7 50 434-483 40-98 (204)
448 KOG0686 COP9 signalosome, subu 29.9 6.9E+02 0.015 26.4 13.8 27 390-416 152-178 (466)
449 PF04090 RNA_pol_I_TF: RNA pol 29.6 4.8E+02 0.01 24.5 9.9 30 454-483 41-70 (199)
450 KOG0890 Protein kinase of the 29.3 1.5E+03 0.033 30.2 31.8 124 216-348 1426-1552(2382)
451 PF11768 DUF3312: Protein of u 28.5 2.2E+02 0.0048 31.1 7.8 57 113-169 412-473 (545)
452 COG4976 Predicted methyltransf 27.9 1E+02 0.0022 29.4 4.5 56 567-622 5-60 (287)
453 PF12968 DUF3856: Domain of Un 27.8 2.8E+02 0.006 23.6 6.4 64 556-619 54-128 (144)
454 cd00280 TRFH Telomeric Repeat 27.5 3.6E+02 0.0078 24.9 7.7 65 505-569 85-155 (200)
455 PF08311 Mad3_BUB1_I: Mad3/BUB 27.2 3.6E+02 0.0079 23.1 7.7 43 406-448 81-124 (126)
456 KOG2471 TPR repeat-containing 26.9 8.4E+02 0.018 26.5 15.4 321 167-538 9-382 (696)
457 PRK14700 recombination factor 26.9 5.3E+02 0.011 26.0 9.5 50 346-403 127-176 (300)
458 KOG4521 Nuclear pore complex, 26.8 1.2E+03 0.027 28.4 15.3 106 429-542 926-1071(1480)
459 KOG4507 Uncharacterized conser 26.0 2.1E+02 0.0046 31.4 6.9 133 486-621 568-706 (886)
460 KOG0292 Vesicle coat complex C 25.4 9.8E+02 0.021 28.1 12.0 130 432-585 652-781 (1202)
461 PF12926 MOZART2: Mitotic-spin 25.4 3.4E+02 0.0075 21.5 7.0 42 409-450 29-70 (88)
462 PF08311 Mad3_BUB1_I: Mad3/BUB 25.3 4.4E+02 0.0094 22.6 9.1 42 472-513 81-123 (126)
463 TIGR02414 pepN_proteo aminopep 25.3 1.2E+03 0.027 27.8 14.7 149 458-613 676-836 (863)
464 PF08225 Antimicrobial19: Pseu 25.1 53 0.0011 17.7 1.2 12 716-727 10-21 (23)
465 PF09986 DUF2225: Uncharacteri 25.1 6.1E+02 0.013 24.2 9.9 20 567-586 175-194 (214)
466 PF04190 DUF410: Protein of un 24.7 6.9E+02 0.015 24.7 18.6 83 421-518 88-170 (260)
467 COG2178 Predicted RNA-binding 24.2 5.9E+02 0.013 23.8 8.6 18 602-619 132-149 (204)
468 TIGR02270 conserved hypothetic 24.0 9.1E+02 0.02 25.8 23.7 26 527-552 254-279 (410)
469 smart00777 Mad3_BUB1_I Mad3/BU 24.0 4E+02 0.0087 22.9 7.1 41 473-513 82-123 (125)
470 PF08424 NRDE-2: NRDE-2, neces 23.8 8E+02 0.017 25.1 15.7 114 470-587 47-184 (321)
471 PRK12356 glutaminase; Reviewed 23.7 8E+02 0.017 25.1 10.4 71 480-551 178-257 (319)
472 PRK14015 pepN aminopeptidase N 23.4 1.3E+03 0.029 27.6 14.6 58 556-613 782-846 (875)
473 PRK11639 zinc uptake transcrip 23.3 2.8E+02 0.0061 25.3 6.6 48 140-187 25-72 (169)
474 PF07575 Nucleopor_Nup85: Nup8 23.2 5.2E+02 0.011 29.1 10.1 92 242-337 373-464 (566)
475 TIGR02270 conserved hypothetic 23.2 9.4E+02 0.02 25.7 24.0 110 208-326 98-207 (410)
476 KOG4334 Uncharacterized conser 23.1 40 0.00087 35.4 1.1 145 169-324 409-573 (650)
477 PF11525 CopK: Copper resistan 22.9 27 0.00059 25.8 -0.1 23 731-753 8-30 (73)
478 PRK11639 zinc uptake transcrip 22.9 3.1E+02 0.0067 25.0 6.8 44 246-289 30-73 (169)
479 COG0735 Fur Fe2+/Zn2+ uptake r 22.6 3.6E+02 0.0079 23.8 7.0 34 246-279 25-58 (145)
480 PF08424 NRDE-2: NRDE-2, neces 22.5 8.5E+02 0.018 24.9 13.9 78 542-619 48-130 (321)
481 PF11817 Foie-gras_1: Foie gra 22.4 3E+02 0.0066 26.9 7.2 16 464-479 188-203 (247)
482 COG0735 Fur Fe2+/Zn2+ uptake r 22.1 3.4E+02 0.0073 24.0 6.7 35 143-177 23-57 (145)
483 KOG4334 Uncharacterized conser 21.9 74 0.0016 33.6 2.7 95 123-223 461-573 (650)
484 cd08326 CARD_CASP9 Caspase act 21.9 4E+02 0.0087 21.0 6.4 61 409-473 20-80 (84)
485 smart00777 Mad3_BUB1_I Mad3/BU 21.8 3.8E+02 0.0083 23.0 6.6 41 575-615 81-123 (125)
486 KOG0687 26S proteasome regulat 21.5 8.8E+02 0.019 24.8 13.1 25 526-550 105-129 (393)
487 KOG0508 Ankyrin repeat protein 21.3 6.7E+02 0.015 27.0 9.2 43 366-412 160-204 (615)
488 PF02607 B12-binding_2: B12 bi 21.0 1.8E+02 0.0039 22.2 4.3 37 366-402 14-50 (79)
489 smart00544 MA3 Domain in DAP-5 20.7 4.9E+02 0.011 21.5 7.3 84 245-328 6-89 (113)
490 COG5108 RPO41 Mitochondrial DN 20.7 4.2E+02 0.0092 29.7 8.0 91 494-584 33-130 (1117)
491 PF11817 Foie-gras_1: Foie gra 20.3 5.3E+02 0.012 25.2 8.4 23 529-551 182-204 (247)
492 KOG4279 Serine/threonine prote 20.2 2.4E+02 0.0052 32.0 6.1 145 456-616 203-369 (1226)
493 PF02607 B12-binding_2: B12 bi 20.2 1.7E+02 0.0037 22.3 4.0 39 465-503 12-50 (79)
494 PF02847 MA3: MA3 domain; Int 20.2 1.8E+02 0.0038 24.2 4.4 83 245-328 6-89 (113)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=5.2e-135 Score=1183.14 Aligned_cols=690 Identities=35% Similarity=0.648 Sum_probs=680.1
Q ss_pred CCCchhHHHHHHHHHHHcCCCCCcchHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChHHHHH
Q 004369 51 SEPVRSLGFQEALSVLTEGPKVQTSSYVSLLQECVNRKSLSNAEIIHAHIVKTGSHQDFFVMTFLVNVYGKCGNMEEAQK 130 (758)
Q Consensus 51 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 130 (758)
..|++++|+++|.+|...|+.||.+||+.++++|+..+++..+.++|..+++.|+.||+.++|+||++|+++|++++|.+
T Consensus 164 ~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~ 243 (857)
T PLN03077 164 KAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARL 243 (857)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHH
Confidence 36889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCCh
Q 004369 131 VFDNLPRINVVSWTSLISGYVQNSQPELAIHVFLDMLEAGNYPTNVTLGTALTACSSLESIRLGKQIHAYVVKYQTEDDT 210 (758)
Q Consensus 131 ~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 210 (758)
+|++|+++|+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|+++|..+.+.|+.||.
T Consensus 244 lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~ 323 (857)
T PLN03077 244 VFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDV 323 (857)
T ss_pred HHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhcCChHHHHHHHhccCCCCcchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccC
Q 004369 211 SVGNSLCSLYSTCGSLNSAIKAFNRIREKNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTML 290 (758)
Q Consensus 211 ~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~ 290 (758)
.+||+|+++|+++|++++|.++|++|.+||+++||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|
T Consensus 324 ~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g 403 (857)
T PLN03077 324 SVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLG 403 (857)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCeeechhHHHHHhhhchhhhchhhcCCChh
Q 004369 291 SLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSHVNLVTWNAMIAGHAQMMDLAKDDLSAHNGGT 370 (758)
Q Consensus 291 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~ 370 (758)
+++.|.++|+.+.+.|+.++..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|++ +|+.+
T Consensus 404 ~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~-----------~g~~~ 472 (857)
T PLN03077 404 DLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRL-----------NNRCF 472 (857)
T ss_pred hHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHH-----------CCCHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHhHhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcC
Q 004369 371 EALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMS 450 (758)
Q Consensus 371 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~ 450 (758)
+|+.+|++|.. +++||..||+++|.+|++.|+++.+.++|..+.+.|+.+|..++|+|+++|+|+|++++|.++|+++
T Consensus 473 eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~- 550 (857)
T PLN03077 473 EALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH- 550 (857)
T ss_pred HHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-
Confidence 99999999986 5999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHH
Q 004369 451 TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMC 530 (758)
Q Consensus 451 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 530 (758)
.+|+++||+||.+|+++|+.++|+++|++|.+.|+.||.+||+.+|.+|++.|++++|.++|+.|.+++|+.|+..+|++
T Consensus 551 ~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~ 630 (857)
T PLN03077 551 EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYAC 630 (857)
T ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999977899999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhH
Q 004369 531 LIDMFVRLGCIEEAFDFIKKMDFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDV 610 (758)
Q Consensus 531 li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 610 (758)
|+++|++.|++++|.+++++|+++||..+|++|+.+|+.+|+.+.|+.+++++++++|+++..|..|+++|++.|+|++|
T Consensus 631 lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a 710 (857)
T PLN03077 631 VVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEV 710 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCCCCCceeEEEECCEEEEEecCCCCCCChHHHHHHHHHHHHHHHHcCcccCCccccchhh----hhhhh
Q 004369 611 AVVKNLTREEKLSETDDWSWIRIKDKVYSFKPNDGLHPQSAEIFKVLDELVEKAKCFGYKQQESFELTDEE----SASVY 686 (758)
Q Consensus 611 ~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~m~~~g~~~~~~~~~~~~~----~~~~~ 686 (758)
.++++.|+++|++|+||+|||++++++|.|.+||.+||+.++||.+|++|..+|++.||.||+..++++.+ ..+++
T Consensus 711 ~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~k~~~~~~ 790 (857)
T PLN03077 711 ARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSMDEIEVSKDDIFCG 790 (857)
T ss_pred HHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhccccHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999998886543 77899
Q ss_pred hhHHHHHHHcccCCCCCCcEEEEeccccCCchhHHHHHHhhhcCCeEEEecCCccccccCccccccc
Q 004369 687 HSEKLAIAFGLLNTPIVSPILVVKSTTMCRDCHNFIKIITSLTAREIIVRDSKRLHKFVNGHCTCRD 753 (758)
Q Consensus 687 ~~~~~a~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~h~~~~g~cs~~~ 753 (758)
||||||+|||||+||+|.||||+||||||+|||+++||||++++|||||||.+|||||+||+|||+|
T Consensus 791 hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 791 HSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred ccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999998
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.5e-123 Score=1061.13 Aligned_cols=608 Identities=36% Similarity=0.621 Sum_probs=599.8
Q ss_pred CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHcC-CCCChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHH
Q 004369 137 RINVVSWTSLISGYVQNSQPELAIHVFLDMLEAG-NYPTNVTLGTALTACSSLESIRLGKQIHAYVVKYQTEDDTSVGNS 215 (758)
Q Consensus 137 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 215 (758)
.++.++|+.+|.+|++.|++++|+++|+.|...+ +.||..||+.++.+|++.++.+.+.++|..|++.|+.||..++|.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4577899999999999999999999999998765 789999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCChHHHHHHHhccCCCCcchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHH
Q 004369 216 LCSLYSTCGSLNSAIKAFNRIREKNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVG 295 (758)
Q Consensus 216 Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 295 (758)
|+++|+++|++++|.++|++|++||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.+..+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCeeechhHHHHHhhhchhhhchhhcCCChhHHHHH
Q 004369 296 AQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSHVNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSI 375 (758)
Q Consensus 296 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l 375 (758)
.++|..+.+.|+.+|..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|++ +|+.++|+++
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~-----------~g~~~eA~~l 312 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYAL-----------HGYSEEALCL 312 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHh-----------CCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HHHhHhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCCCChh
Q 004369 376 FSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMSTRTLI 455 (758)
Q Consensus 376 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~~ 455 (758)
|++|.+.|+.||..||++++.+|++.|+++.|.++|..|.+.|+.+|..++++|+++|+|+|++++|.++|++|.++|++
T Consensus 313 f~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~ 392 (697)
T PLN03081 313 YYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLI 392 (697)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHH
Q 004369 456 SWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMF 535 (758)
Q Consensus 456 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 535 (758)
+||+||.+|+++|+.++|+++|++|.+.|+.||.+||++++.+|++.|++++|.++|+.|.+++|+.|+..+|++|+++|
T Consensus 393 t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l 472 (697)
T PLN03081 393 SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELL 472 (697)
T ss_pred eHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998889999999999999999
Q ss_pred HHcCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHH
Q 004369 536 VRLGCIEEAFDFIKKMDFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKN 615 (758)
Q Consensus 536 ~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 615 (758)
++.|++++|.+++++|+..|+..+|++|+.+|+.+|+++.|+.+++++++++|++..+|..|+++|++.|+|++|.++++
T Consensus 473 ~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~ 552 (697)
T PLN03081 473 GREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVE 552 (697)
T ss_pred HhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhCCCCCCCceeEEEECCEEEEEecCCCCCCChHHHHHHHHHHHHHHHHcCcccCCccccchhh-----hhhhhhhHH
Q 004369 616 LTREEKLSETDDWSWIRIKDKVYSFKPNDGLHPQSAEIFKVLDELVEKAKCFGYKQQESFELTDEE-----SASVYHSEK 690 (758)
Q Consensus 616 ~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~m~~~g~~~~~~~~~~~~~-----~~~~~~~~~ 690 (758)
.|+++|++|.||+|||++++++|.|.+||..||+..+||.++.++..+|++.||.||+.+++|+++ ..+++||||
T Consensus 553 ~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsek 632 (697)
T PLN03081 553 TLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEK 632 (697)
T ss_pred HHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHH
Confidence 999999999999999999999999999999999999999999999999999999999999999987 678999999
Q ss_pred HHHHHcccCCCCCCcEEEEeccccCCchhHHHHHHhhhcCCeEEEecCCccccccCccccccccC
Q 004369 691 LAIAFGLLNTPIVSPILVVKSTTMCRDCHNFIKIITSLTAREIIVRDSKRLHKFVNGHCTCRDFG 755 (758)
Q Consensus 691 ~a~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~h~~~~g~cs~~~~~ 755 (758)
||+|||||++|||.||||+||||||+|||+|+||||++++|+|||||.+|||||+||+|||+|||
T Consensus 633 la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 633 LAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred HHHHhhCccCCCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.7e-84 Score=758.27 Aligned_cols=670 Identities=25% Similarity=0.410 Sum_probs=598.1
Q ss_pred CCCchhHHHHHHHHHHHcCCCCCcchHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChHHHHH
Q 004369 51 SEPVRSLGFQEALSVLTEGPKVQTSSYVSLLQECVNRKSLSNAEIIHAHIVKTGSHQDFFVMTFLVNVYGKCGNMEEAQK 130 (758)
Q Consensus 51 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 130 (758)
..|.+++|+.+|..|...|+.|+..+|..++.+|.+.+.++.|.++|..+.+.+..++..++|+|+++|+++|+++.|.+
T Consensus 63 ~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~ 142 (857)
T PLN03077 63 SHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWY 142 (857)
T ss_pred hCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCCh
Q 004369 131 VFDNLPRINVVSWTSLISGYVQNSQPELAIHVFLDMLEAGNYPTNVTLGTALTACSSLESIRLGKQIHAYVVKYQTEDDT 210 (758)
Q Consensus 131 ~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 210 (758)
+|++|++||+++||++|.+|++.|++++|+++|++|...|+.||..||+.++++|+..+++..++++|..+++.|+.||.
T Consensus 143 ~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 222 (857)
T PLN03077 143 VFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDV 222 (857)
T ss_pred HHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhcCChHHHHHHHhccCCCCcchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccC
Q 004369 211 SVGNSLCSLYSTCGSLNSAIKAFNRIREKNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTML 290 (758)
Q Consensus 211 ~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~ 290 (758)
.++|+||++|+++|++++|.++|++|++||+++||+||.+|++.|++++|+++|.+|.+.|+.||..||+.++.+|++.|
T Consensus 223 ~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g 302 (857)
T PLN03077 223 DVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLG 302 (857)
T ss_pred chHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCeeechhHHHHHhhhchhhhchhhcCCChh
Q 004369 291 SLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSHVNLVTWNAMIAGHAQMMDLAKDDLSAHNGGT 370 (758)
Q Consensus 291 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~ 370 (758)
+.+.|.++|..+.+.|+.||..+||+|+++|+++|++++|.++|++|..+|+++||+||.+|++ .|+++
T Consensus 303 ~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~-----------~g~~~ 371 (857)
T PLN03077 303 DERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEK-----------NGLPD 371 (857)
T ss_pred ChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHh-----------CCCHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHhHhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcC
Q 004369 371 EALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMS 450 (758)
Q Consensus 371 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~ 450 (758)
+|+++|++|.+.|+.||..||++++.+|++.|+++.|.++|+.+.+.|+.++..++|+|+++|+++|++++|.++|++|.
T Consensus 372 ~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~ 451 (857)
T PLN03077 372 KALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP 451 (857)
T ss_pred HHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHH
Q 004369 451 TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMC 530 (758)
Q Consensus 451 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 530 (758)
++|+++||+||.+|+++|+.++|+++|++|.. +++||.+||+.+|.+|++.|.++.+.+++..+.+ .|+.++..++++
T Consensus 452 ~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~-~g~~~~~~~~na 529 (857)
T PLN03077 452 EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLR-TGIGFDGFLPNA 529 (857)
T ss_pred CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHH-hCCCccceechH
Confidence 99999999999999999999999999999986 5999999999999999999999999999999998 599999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhccC-CCCchhHHHHHHHhhhCCCchh
Q 004369 531 LIDMFVRLGCIEEAFDFIKKMDFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLK-PKDCESYAMLLDIFVSAGRWED 609 (758)
Q Consensus 531 li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~ 609 (758)
|+++|+++|++++|.++|+++ .||..+|++++.+|.++|+.++|.+++++|.+.+ .+|..+|..++.+|.+.|++++
T Consensus 530 Li~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~e 607 (857)
T PLN03077 530 LLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQ 607 (857)
T ss_pred HHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHH
Confidence 999999999999999999998 7899999999999999999999999999999865 3357899999999999999999
Q ss_pred HHHHHHHhh-hCCCCCCCceeEEEECCEEEEEecCCCCCCChHHHHHHHHHHHHHHHHcCcccCCccccchhhhhhhhh-
Q 004369 610 VAVVKNLTR-EEKLSETDDWSWIRIKDKVYSFKPNDGLHPQSAEIFKVLDELVEKAKCFGYKQQESFELTDEESASVYH- 687 (758)
Q Consensus 610 a~~~~~~m~-~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~m~~~g~~~~~~~~~~~~~~~~~~~- 687 (758)
|.++++.|. +.|+.+... .+..+ +..+ ...+..++ ..+++++ ....||..++-.-+. ....|
T Consensus 608 a~~~f~~M~~~~gi~P~~~-~y~~l---v~~l----~r~G~~~e----A~~~~~~---m~~~pd~~~~~aLl~-ac~~~~ 671 (857)
T PLN03077 608 GLEYFHSMEEKYSITPNLK-HYACV---VDLL----GRAGKLTE----AYNFINK---MPITPDPAVWGALLN-ACRIHR 671 (857)
T ss_pred HHHHHHHHHHHhCCCCchH-HHHHH---HHHH----HhCCCHHH----HHHHHHH---CCCCCCHHHHHHHHH-HHHHcC
Confidence 999999998 556643321 00000 0001 11122222 2344444 468888754332222 11111
Q ss_pred -h---HHHH-HHHcccCCCCCCcEEEEeccccCCchhHHHHHHhhhcCCeEE-------EecCCccccccCccccc
Q 004369 688 -S---EKLA-IAFGLLNTPIVSPILVVKSTTMCRDCHNFIKIITSLTAREII-------VRDSKRLHKFVNGHCTC 751 (758)
Q Consensus 688 -~---~~~a-~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~s~~~~~~~~-------~~~~~~~h~~~~g~cs~ 751 (758)
- |+.| ..+.+.+...+.-+.+..-....|+..++.+....|..+.+- +--.+..|-|..|.-+-
T Consensus 672 ~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h 747 (857)
T PLN03077 672 HVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESH 747 (857)
T ss_pred ChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCC
Confidence 1 2222 334555555554443444467889999999999887766321 11135788887776543
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=5.3e-69 Score=613.16 Aligned_cols=458 Identities=24% Similarity=0.410 Sum_probs=442.9
Q ss_pred CCCchhHHHHHHHHHHHcC-CCCCcchHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChHHHH
Q 004369 51 SEPVRSLGFQEALSVLTEG-PKVQTSSYVSLLQECVNRKSLSNAEIIHAHIVKTGSHQDFFVMTFLVNVYGKCGNMEEAQ 129 (758)
Q Consensus 51 ~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 129 (758)
..|++++|+++|..|...+ ..||..+|+.++.+|++.++++.|.++|..|.+.|+.||..++|.|+++|+++|++++|.
T Consensus 99 ~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~ 178 (697)
T PLN03081 99 ACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDAR 178 (697)
T ss_pred cCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHH
Confidence 3788999999999998765 689999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCC
Q 004369 130 KVFDNLPRINVVSWTSLISGYVQNSQPELAIHVFLDMLEAGNYPTNVTLGTALTACSSLESIRLGKQIHAYVVKYQTEDD 209 (758)
Q Consensus 130 ~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 209 (758)
++|++|++||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|..+.++++|..+.+.|+.+|
T Consensus 179 ~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d 258 (697)
T PLN03081 179 RLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGD 258 (697)
T ss_pred HHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHhccCCCCcchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHccc
Q 004369 210 TSVGNSLCSLYSTCGSLNSAIKAFNRIREKNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTM 289 (758)
Q Consensus 210 ~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 289 (758)
..++|+||++|+++|++++|.++|++|+++|+++||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.
T Consensus 259 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~ 338 (697)
T PLN03081 259 TFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRL 338 (697)
T ss_pred ceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCeeechhHHHHHhhhchhhhchhhcCCCh
Q 004369 290 LSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSHVNLVTWNAMIAGHAQMMDLAKDDLSAHNGG 369 (758)
Q Consensus 290 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~~~l~~~g~~ 369 (758)
|.++.|.++|..|.+.|+.+|..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|++ .|+.
T Consensus 339 g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~-----------~G~~ 407 (697)
T PLN03081 339 ALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGN-----------HGRG 407 (697)
T ss_pred cchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHH-----------cCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred hHHHHHHHHhHhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHH-cCCCChHHHHhHHhhhHHhcCCHHHHHHHHHh
Q 004369 370 TEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLK-TGFLSDVVVGTALVNMYKKCGRIERASRVFVE 448 (758)
Q Consensus 370 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~ 448 (758)
++|+++|++|.+.|+.||..||++++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.++|++
T Consensus 408 ~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~ 487 (697)
T PLN03081 408 TKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRR 487 (697)
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999986 69999999999999999999999999999999
Q ss_pred cC-CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCC
Q 004369 449 MS-TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIK 522 (758)
Q Consensus 449 ~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 522 (758)
|. .|+..+|++|+.+|..+|+.+.|..+++++.+ +.|+ ..+|+.++..|++.|++++|.++++.|.+. |+.
T Consensus 488 ~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~-g~~ 560 (697)
T PLN03081 488 APFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK-GLS 560 (697)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc-CCc
Confidence 97 67999999999999999999999999999875 5665 668999999999999999999999999874 764
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=9.7e-67 Score=595.43 Aligned_cols=503 Identities=15% Similarity=0.209 Sum_probs=455.9
Q ss_pred CCchhHHHHHHHHhhcCCChHHHHHHHccCCCCCcch-----HHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHH
Q 004369 106 HQDFFVMTFLVNVYGKCGNMEEAQKVFDNLPRINVVS-----WTSLISGYVQNSQPELAIHVFLDMLEAGNYPTNVTLGT 180 (758)
Q Consensus 106 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~-----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 180 (758)
.++...+..+++.++++|++++|.++|++|++++... ++.++.+|.+.|..++|+.+|+.|.. ||..||+.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~ 442 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNM 442 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHH
Confidence 4567778888888899999999999999998766554 45566778899999999999998864 89999999
Q ss_pred HHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHhhcCChHHHHHHHhccC----CCCcchHHHHHHHHhhCCC
Q 004369 181 ALTACSSLESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGSLNSAIKAFNRIR----EKNVMSWTTVIGACGENGE 256 (758)
Q Consensus 181 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~ 256 (758)
+|.+|++.|+++.|.++|+.|.+.|+.||..+|+.||.+|+++|++++|.++|++|. .||.++||+||.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 999999999999999999999999999999999999999999999999999999998 4899999999999999999
Q ss_pred hhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHHHHHHHHHHH--hCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 004369 257 AVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIK--LGYASNLRVRNSIMYLYLKCGLVDEAQKLF 334 (758)
Q Consensus 257 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 334 (758)
+++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++|..|.+ .|+.||..+|++|+++|+++|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999976 678999999999999999999999999999
Q ss_pred ccCCC----CCeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHhcccchHHHHHH
Q 004369 335 DGMSH----VNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQI 410 (758)
Q Consensus 335 ~~m~~----~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i 410 (758)
+.|.+ ++..+||++|.+|++ .|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k-----------~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l 671 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQ-----------KGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEI 671 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHh-----------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 99976 567899999999999 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcC----CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 004369 411 HALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMS----TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVR 486 (758)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 486 (758)
++.|.+.|+.||..+|++||++|+++|++++|.++|++|. .||+++||+||.+|++.|++++|+++|++|.+.|+.
T Consensus 672 ~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~ 751 (1060)
T PLN03218 672 LQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLC 751 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999995 689999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH----HcC-------------------CHHH
Q 004369 487 PNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFV----RLG-------------------CIEE 543 (758)
Q Consensus 487 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~----~~g-------------------~~~~ 543 (758)
||..||+.++.+|++.|++++|.++|+.|.+ .|+.||..+|++|++++. +++ ..++
T Consensus 752 Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k-~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~ 830 (1060)
T PLN03218 752 PNTITYSILLVASERKDDADVGLDLLSQAKE-DGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSW 830 (1060)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHH
Confidence 9999999999999999999999999999988 499999999999997643 222 3467
Q ss_pred HHHHHHHc---CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhcc-CCCCchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369 544 AFDFIKKM---DFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKL-KPKDCESYAMLLDIFVSAGRWEDVAVVKNLTRE 619 (758)
Q Consensus 544 A~~~~~~m---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 619 (758)
|+.+|++| ++.||..+|+.++.++.+.+..+.+..+++.+... .+.+..+|..|++.+.+. .++|..+++.|.+
T Consensus 831 Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~ 908 (1060)
T PLN03218 831 ALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAAS 908 (1060)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHH
Confidence 99999999 99999999999998777888888888888776433 356778999999988432 3589999999999
Q ss_pred CCCCCCC
Q 004369 620 EKLSETD 626 (758)
Q Consensus 620 ~~~~~~~ 626 (758)
.|+.+..
T Consensus 909 ~Gi~p~~ 915 (1060)
T PLN03218 909 LGVVPSV 915 (1060)
T ss_pred cCCCCCc
Confidence 9986543
No 6
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.6e-65 Score=585.46 Aligned_cols=504 Identities=15% Similarity=0.190 Sum_probs=477.5
Q ss_pred CCCCcchHHHHHHHhhcCCCcHHHHHHHHHHHHhCC-CCchhHHHHHHHHhhcCCChHHHHHHHccCCCCCcchHHHHHH
Q 004369 70 PKVQTSSYVSLLQECVNRKSLSNAEIIHAHIVKTGS-HQDFFVMTFLVNVYGKCGNMEEAQKVFDNLPRINVVSWTSLIS 148 (758)
Q Consensus 70 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~ 148 (758)
..++...|..++..|.+.|+++.|.++++.|.+.|+ +++..+++.++..|.+.|.+++|.++|+.|+.||..+||.+|.
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~ 445 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMS 445 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 455677899999999999999999999999999985 5788888999999999999999999999999999999999999
Q ss_pred HHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHhhcCChHH
Q 004369 149 GYVQNSQPELAIHVFLDMLEAGNYPTNVTLGTALTACSSLESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGSLNS 228 (758)
Q Consensus 149 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~ 228 (758)
+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|+++.|.++++.|.+.|+.||..+|+.||++|++.|++++
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ee 525 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAK 525 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCC----CCcchHHHHHHHHhhCCChhhHHHHHHHHHH--CCCCCChhhHHHHHHHHcccCChHHHHHHHHHH
Q 004369 229 AIKAFNRIRE----KNVMSWTTVIGACGENGEAVQGLRFFSKMLS--EGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLG 302 (758)
Q Consensus 229 A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~--~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 302 (758)
|.++|+.|.+ ||.++||.||.+|++.|++++|.++|.+|.. .|+.||..||++++.+|++.|+++.|.++|+.|
T Consensus 526 Al~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M 605 (1060)
T PLN03218 526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI 605 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999964 8999999999999999999999999999986 689999999999999999999999999999999
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCC----CCeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHH
Q 004369 303 IKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSH----VNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSK 378 (758)
Q Consensus 303 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~ 378 (758)
.+.|+.|+..+||++|.+|++.|++++|.++|++|.+ ||..+|+++|.+|++ .|+.++|+++|++
T Consensus 606 ~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k-----------~G~~eeA~~l~~e 674 (1060)
T PLN03218 606 HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGH-----------AGDLDKAFEILQD 674 (1060)
T ss_pred HHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-----------CCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999975 899999999999999 9999999999999
Q ss_pred hHhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcC----CCCh
Q 004369 379 LNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMS----TRTL 454 (758)
Q Consensus 379 m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~----~~~~ 454 (758)
|.+.|+.||..+|+++|.+|++.|++++|.++|+.|.+.|+.||..+||+||++|++.|++++|.++|++|. .||.
T Consensus 675 M~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~ 754 (1060)
T PLN03218 675 ARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNT 754 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999986 5799
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----c-------------------ccHHHHHHH
Q 004369 455 ISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSN----A-------------------GMVYEALGY 511 (758)
Q Consensus 455 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~-------------------g~~~~a~~~ 511 (758)
.+|+++|.+|++.|+.++|.++|++|.+.|+.||..+|+.++..|.+ . +..++|..+
T Consensus 755 ~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~l 834 (1060)
T PLN03218 755 ITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMV 834 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHH
Confidence 99999999999999999999999999999999999999999976542 1 124679999
Q ss_pred HHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc---CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhccC
Q 004369 512 FEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM---DFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLK 587 (758)
Q Consensus 512 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 587 (758)
|++|.+. |+.||..+|+.++.++++.+..+.+..+++.| +..|+..+|++|+.+|.+. .++|..++++|.+.+
T Consensus 835 f~eM~~~-Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~G 910 (1060)
T PLN03218 835 YRETISA-GTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLG 910 (1060)
T ss_pred HHHHHHC-CCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcC
Confidence 9999985 99999999999999999999999999999998 5667889999999998433 468999999999865
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.5e-32 Score=326.66 Aligned_cols=549 Identities=13% Similarity=0.085 Sum_probs=376.6
Q ss_pred CCCCchhHHHHHHHHHHHcCCCCCcchHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChHHHH
Q 004369 50 NSEPVRSLGFQEALSVLTEGPKVQTSSYVSLLQECVNRKSLSNAEIIHAHIVKTGSHQDFFVMTFLVNVYGKCGNMEEAQ 129 (758)
Q Consensus 50 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 129 (758)
...|++++|...|.+++...+. +...+..+...+...|+++.|...+..+.+.. +.+...++.+...|.+.|++++|.
T Consensus 306 ~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 383 (899)
T TIGR02917 306 YQLGNLEQAYQYLNQILKYAPN-SHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAA 383 (899)
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 3466777777777776655432 33445556666677777777777777776554 445666777777777778888888
Q ss_pred HHHccCCC---CCcchHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHhCC
Q 004369 130 KVFDNLPR---INVVSWTSLISGYVQNSQPELAIHVFLDMLEAGNYPTNVTLGTALTACSSLESIRLGKQIHAYVVKYQT 206 (758)
Q Consensus 130 ~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 206 (758)
+.|+++.+ .+...|..+...+...|++++|++.|+.+.+.... +......++..+.+.|+.+.+..++..+.+. .
T Consensus 384 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~ 461 (899)
T TIGR02917 384 EYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKK-Q 461 (899)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-C
Confidence 77776643 23445666666777777777777777777654322 2233444556667777777777777777654 3
Q ss_pred CCChhHHHHHHHHHhhcCChHHHHHHHhccCC---CCcchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHH
Q 004369 207 EDDTSVGNSLCSLYSTCGSLNSAIKAFNRIRE---KNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSIS 283 (758)
Q Consensus 207 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 283 (758)
+.+..++..+...|...|++++|.+.|+++.+ .+...+..+...+...|++++|.+.|+++...+ +.+..++..+.
T Consensus 462 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 540 (899)
T TIGR02917 462 PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALA 540 (899)
T ss_pred CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 44566777788888888888888888877654 244566667777777888888888888877653 23455666777
Q ss_pred HHHcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCC---CCeeechhHHHHHhhhchhhh
Q 004369 284 SVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSH---VNLVTWNAMIAGHAQMMDLAK 360 (758)
Q Consensus 284 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~ 360 (758)
..+...|+.+.+..++..+.+.+ +.+...+..++..|.+.|++++|..+++.+.. .+...|..+...|.+
T Consensus 541 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~------ 613 (899)
T TIGR02917 541 GLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLA------ 613 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH------
Confidence 77777788888888887776654 44556677777778888888888887777653 345567777777777
Q ss_pred chhhcCCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHH
Q 004369 361 DDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIE 440 (758)
Q Consensus 361 ~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~ 440 (758)
.|++++|+..|+++.+.. +.+...+..+...+...|++++|..++..+.+.. +.+...+..++..+.+.|+++
T Consensus 614 -----~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 686 (899)
T TIGR02917 614 -----AGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTE 686 (899)
T ss_pred -----cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHH
Confidence 777777887777776642 2345566667777777777777777777776643 445667777777777777777
Q ss_pred HHHHHHHhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhh
Q 004369 441 RASRVFVEMST---RTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQK 517 (758)
Q Consensus 441 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 517 (758)
+|.++++.+.. .+...|..+...+...|++++|++.|+++... .|+..++..+..++.+.|++++|.+.++.+.+
T Consensus 687 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 764 (899)
T TIGR02917 687 SAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLK 764 (899)
T ss_pred HHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77777777653 34456667777777777777777777777764 34445666666777777777777777777765
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHH
Q 004369 518 EYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYA 595 (758)
Q Consensus 518 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 595 (758)
..+.+...+..+...|.+.|+.++|.+.|+++ ...| +..+++.+...+...|+ ++|+..+++++++.|+++..+.
T Consensus 765 --~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~ 841 (899)
T TIGR02917 765 --THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILD 841 (899)
T ss_pred --hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHH
Confidence 23445666777777777777777777777776 3333 55667777777777777 6677777777777777777777
Q ss_pred HHHHHhhhCCCchhHHHHHHHhhhCCC
Q 004369 596 MLLDIFVSAGRWEDVAVVKNLTREEKL 622 (758)
Q Consensus 596 ~l~~~~~~~g~~~~a~~~~~~m~~~~~ 622 (758)
.++.+|...|++++|.++++.+.+.+.
T Consensus 842 ~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 842 TLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 777777777777777777777766543
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.3e-31 Score=320.37 Aligned_cols=554 Identities=11% Similarity=0.023 Sum_probs=467.0
Q ss_pred hhhhcCCCCCchhHHHHHHHHHHHcCCCCCcchHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCC
Q 004369 44 LIQLNGNSEPVRSLGFQEALSVLTEGPKVQTSSYVSLLQECVNRKSLSNAEIIHAHIVKTGSHQDFFVMTFLVNVYGKCG 123 (758)
Q Consensus 44 l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 123 (758)
+.+......|++++|+..|.++++.++.- ...+..+...+...|+++.|...+..+++.. +.+...+..+...+.+.|
T Consensus 266 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~-~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g 343 (899)
T TIGR02917 266 LKALVDFQKKNYEDARETLQDALKSAPEY-LPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLG 343 (899)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCc-hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCC
Confidence 33334445788889999888887765431 2233344455678899999999999988765 456677788888999999
Q ss_pred ChHHHHHHHccCCC---CCcchHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccCChHHHHHHHHH
Q 004369 124 NMEEAQKVFDNLPR---INVVSWTSLISGYVQNSQPELAIHVFLDMLEAGNYPTNVTLGTALTACSSLESIRLGKQIHAY 200 (758)
Q Consensus 124 ~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 200 (758)
++++|...++.+.. .+...|+.+...+.+.|++++|.+.|+++.+.. +.+...+..+...+...|+.+.|...+..
T Consensus 344 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 422 (899)
T TIGR02917 344 RVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLET 422 (899)
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 99999999988754 355678889999999999999999999998753 22455667777788899999999999999
Q ss_pred HHHhCCCCChhHHHHHHHHHhhcCChHHHHHHHhccCC---CCcchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChh
Q 004369 201 VVKYQTEDDTSVGNSLCSLYSTCGSLNSAIKAFNRIRE---KNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEF 277 (758)
Q Consensus 201 ~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 277 (758)
+.+.... .......++..|.+.|++++|..+++.+.. .+...|+.+...+...|++++|.+.|+++.+.. +.+..
T Consensus 423 a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~ 500 (899)
T TIGR02917 423 AAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFP 500 (899)
T ss_pred HHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHH
Confidence 9886532 345566788899999999999999998875 356789999999999999999999999998753 23455
Q ss_pred hHHHHHHHHcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCC---CCeeechhHHHHHhh
Q 004369 278 TLTSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSH---VNLVTWNAMIAGHAQ 354 (758)
Q Consensus 278 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~ 354 (758)
.+..+...+...|+++.|.+++..+.+.. +.+..++..+...|.+.|+.++|..+|+++.. .+...+..+...|..
T Consensus 501 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 579 (899)
T TIGR02917 501 AAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLG 579 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHH
Confidence 67778888899999999999999998876 56788899999999999999999999998854 345567788888888
Q ss_pred hchhhhchhhcCCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHH
Q 004369 355 MMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYK 434 (758)
Q Consensus 355 ~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~ 434 (758)
.|++++|+.+++++... .+.+..++..+..++...|+++.|...+..+.+.. +.+...+..+...|.
T Consensus 580 -----------~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 646 (899)
T TIGR02917 580 -----------KGQLKKALAILNEAADA-APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYA 646 (899)
T ss_pred -----------CCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 99999999999999875 35577889999999999999999999999998764 456778889999999
Q ss_pred hcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHH
Q 004369 435 KCGRIERASRVFVEMS---TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGY 511 (758)
Q Consensus 435 ~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 511 (758)
+.|++++|..+|+++. +.+..+|..++..+...|++++|..+++.+.+.. .++...+..+...+...|++++|.+.
T Consensus 647 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~ 725 (899)
T TIGR02917 647 VMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQA 725 (899)
T ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999876 3467899999999999999999999999999874 44677788888899999999999999
Q ss_pred HHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCC
Q 004369 512 FEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPK 589 (758)
Q Consensus 512 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 589 (758)
|+.+.. ..|+...+..++.++.+.|++++|.+.++++ ...| +..++..+...|...|+.++|...++++++..|+
T Consensus 726 ~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 802 (899)
T TIGR02917 726 YRKALK---RAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPD 802 (899)
T ss_pred HHHHHh---hCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC
Confidence 999976 3466678888999999999999999999998 4444 6788999999999999999999999999999999
Q ss_pred CchhHHHHHHHhhhCCCchhHHHHHHHhhhCC
Q 004369 590 DCESYAMLLDIFVSAGRWEDVAVVKNLTREEK 621 (758)
Q Consensus 590 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 621 (758)
++..+..++++|...|+ ++|..+++.+.+..
T Consensus 803 ~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~ 833 (899)
T TIGR02917 803 NAVVLNNLAWLYLELKD-PRALEYAEKALKLA 833 (899)
T ss_pred CHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC
Confidence 99999999999999999 88999999887643
No 9
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=99.97 E-value=6.3e-32 Score=226.08 Aligned_cols=101 Identities=53% Similarity=0.822 Sum_probs=92.2
Q ss_pred ceeEEEECCEEEEEecCCCCCCChHHHHHHHHHHHHHHHHcCcccCCccccchhh-------------hhhhhhhHHHHH
Q 004369 627 DWSWIRIKDKVYSFKPNDGLHPQSAEIFKVLDELVEKAKCFGYKQQESFELTDEE-------------SASVYHSEKLAI 693 (758)
Q Consensus 627 ~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~m~~~g~~~~~~~~~~~~~-------------~~~~~~~~~~a~ 693 (758)
|+||+++ |.|++||.+||+. ++..++...||.|++..+.|+++ ..+++||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 7899886 9999999999988 45667778899999988888766 267899999999
Q ss_pred HHcccCCCCCCcEEEEecc-ccCCchhHHHHHHhhhcCCeEEEecCCcccccc
Q 004369 694 AFGLLNTPIVSPILVVKST-TMCRDCHNFIKIITSLTAREIIVRDSKRLHKFV 745 (758)
Q Consensus 694 ~~~~~~~~~~~~~~~~~n~-~~~~~~~~~~~~~s~~~~~~~~~~~~~~~h~~~ 745 (758)
||||+++ ||+||+ |||+|||+++|+||++++|+|||||.+|||||+
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999998 899999 999999999999999999999999999999997
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.95 E-value=5.2e-23 Score=246.84 Aligned_cols=412 Identities=10% Similarity=0.028 Sum_probs=313.7
Q ss_pred HHhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHhhcCChHHHHHHHhccCC--CCc---chHHHH----------
Q 004369 183 TACSSLESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGSLNSAIKAFNRIRE--KNV---MSWTTV---------- 247 (758)
Q Consensus 183 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~---~~~~~l---------- 247 (758)
..+...|++++|...++.+++.. +.+..++..|...|.+.|++++|...|++..+ |+. ..|..+
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 34556788889998888888764 23667788888888899999999998887765 322 123222
Q ss_pred --HHHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 004369 248 --IGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCG 325 (758)
Q Consensus 248 --i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 325 (758)
...+.+.|++++|+..|++..+.. +.+...+..+...+...|+++.|.+.+..+++.. +.+...+..+...|. .+
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~ 432 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQ 432 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hc
Confidence 235667889999999999888753 2344556667778888899999999998888764 344556666777774 45
Q ss_pred CHHHHHHHHccCCCCCe------------eechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCC-CHHHHH
Q 004369 326 LVDEAQKLFDGMSHVNL------------VTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKP-DLYTFS 392 (758)
Q Consensus 326 ~~~~A~~~~~~m~~~~~------------~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~ 392 (758)
+.++|..+++.+..... ..+..+...+.. .|++++|++.|++..+. .| +...+.
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~-----------~g~~~eA~~~~~~Al~~--~P~~~~~~~ 499 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALEN-----------QGKWAQAAELQRQRLAL--DPGSVWLTY 499 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHH-----------CCCHHHHHHHHHHHHHh--CCCCHHHHH
Confidence 77888888877654211 122233444555 99999999999999875 45 455677
Q ss_pred HHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCCC----Ch---------hHHHH
Q 004369 393 SILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMSTR----TL---------ISWTS 459 (758)
Q Consensus 393 ~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~----~~---------~~~~~ 459 (758)
.+...+.+.|+.++|...++.+.+.. +.+...+..+...+.+.|+.++|...++.+... +. ..+..
T Consensus 500 ~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~ 578 (1157)
T PRK11447 500 RLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLE 578 (1157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHH
Confidence 78888999999999999999988754 334555555666678899999999999988632 11 11234
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcC
Q 004369 460 MITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLG 539 (758)
Q Consensus 460 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 539 (758)
+...+...|+.++|+.+++. .+++...+..+...+.+.|++++|...|+.+.+. -+.+...+..++.+|...|
T Consensus 579 ~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g 651 (1157)
T PRK11447 579 TANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQG 651 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCC
Confidence 56778899999999999882 2445566777888899999999999999999863 2335788899999999999
Q ss_pred CHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCc------hhHHHHHHHhhhCCCchhHH
Q 004369 540 CIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDC------ESYAMLLDIFVSAGRWEDVA 611 (758)
Q Consensus 540 ~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~ 611 (758)
++++|++.+++. ...| +..++..+..++...|++++|.+.++++++..|+++ ..+..++.++...|++++|.
T Consensus 652 ~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~ 731 (1157)
T PRK11447 652 DLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQAL 731 (1157)
T ss_pred CHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999988 5556 456678888899999999999999999999876554 36667899999999999999
Q ss_pred HHHHHhhh
Q 004369 612 VVKNLTRE 619 (758)
Q Consensus 612 ~~~~~m~~ 619 (758)
..++....
T Consensus 732 ~~y~~Al~ 739 (1157)
T PRK11447 732 ETYKDAMV 739 (1157)
T ss_pred HHHHHHHh
Confidence 99888753
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.95 E-value=2.7e-23 Score=249.20 Aligned_cols=516 Identities=11% Similarity=0.025 Sum_probs=352.6
Q ss_pred hhcCCCcHHHHHHHHHHHHhCCCCchhHHHHH-HHHhhcCCChHHHHHHHccCCC--C-CcchHHHHHHHHHhCCCchHH
Q 004369 84 CVNRKSLSNAEIIHAHIVKTGSHQDFFVMTFL-VNVYGKCGNMEEAQKVFDNLPR--I-NVVSWTSLISGYVQNSQPELA 159 (758)
Q Consensus 84 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l-i~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A 159 (758)
+...|++++|.+.++.+++.. +++......+ .......|+.++|++.|+++.+ | +...+..+...+...|+.++|
T Consensus 122 l~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eA 200 (1157)
T PRK11447 122 LATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEG 200 (1157)
T ss_pred HHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHH
Confidence 455566666666666655433 2222111111 1111233566666666665543 2 233455555556666666666
Q ss_pred HHHHHHHHHcCCC----------------CChh---hHHHHHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 004369 160 IHVFLDMLEAGNY----------------PTNV---TLGTALTACSSLESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLY 220 (758)
Q Consensus 160 ~~~~~~m~~~g~~----------------p~~~---t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y 220 (758)
+..|+++.+.... ++.. .+...+..+........+...+....+....|+. ....+...+
T Consensus 201 l~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~-~~~~~G~~~ 279 (1157)
T PRK11447 201 FAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAF-RARAQGLAA 279 (1157)
T ss_pred HHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcch-HHHHHHHHH
Confidence 6666665432100 0000 0111111111111222333333333222222221 112335567
Q ss_pred hhcCChHHHHHHHhccCC--C-CcchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCC-ChhhH------------HHHHH
Q 004369 221 STCGSLNSAIKAFNRIRE--K-NVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQP-NEFTL------------TSISS 284 (758)
Q Consensus 221 ~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~------------~~ll~ 284 (758)
...|++++|...|++..+ | |...+..+...|.+.|++++|+..|++..+..... +...+ .....
T Consensus 280 ~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~ 359 (1157)
T PRK11447 280 VDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGD 359 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHH
Confidence 788999999999998865 3 56788899999999999999999999988754221 11111 11234
Q ss_pred HHcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCC--C-CeeechhHHHHHhhhchhhhc
Q 004369 285 VCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSH--V-NLVTWNAMIAGHAQMMDLAKD 361 (758)
Q Consensus 285 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~~ 361 (758)
.+.+.|+++.|...+..+++.. +.+...+..+..+|.+.|++++|.+.|++..+ | +...+..+...|.
T Consensus 360 ~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-------- 430 (1157)
T PRK11447 360 AALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-------- 430 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--------
Confidence 5678899999999999999875 45667788899999999999999999999865 2 2334444555543
Q ss_pred hhhcCCChhHHHHHHHHhHhCCCCC--------CHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhH
Q 004369 362 DLSAHNGGTEALSIFSKLNSSGMKP--------DLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMY 433 (758)
Q Consensus 362 ~l~~~g~~~~A~~l~~~m~~~g~~p--------~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y 433 (758)
.++.++|+.+++.+....... ....+......+...|++++|.+.++.+++.. +.+..++..+...|
T Consensus 431 ----~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~ 505 (1157)
T PRK11447 431 ----QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDL 505 (1157)
T ss_pred ----hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 456799998887764321100 11234445667788999999999999998864 44677888899999
Q ss_pred HhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH---------HHHHHHHHHhc
Q 004369 434 KKCGRIERASRVFVEMS---TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQV---------TFVGALAACSN 501 (758)
Q Consensus 434 ~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---------t~~~ll~a~~~ 501 (758)
.+.|++++|...|+++. ..+...+..+...+...|+.++|+..++++......++.. .+..+...+..
T Consensus 506 ~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~ 585 (1157)
T PRK11447 506 RQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRD 585 (1157)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHH
Confidence 99999999999999875 3355566666666788999999999998865432222221 23345667888
Q ss_pred cccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHH
Q 004369 502 AGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYA 579 (758)
Q Consensus 502 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~ 579 (758)
.|+.++|..+++. .+++...+..+.+.|.+.|++++|++.|++. ...| +...+..++..+...|++++|+..
T Consensus 586 ~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~ 659 (1157)
T PRK11447 586 SGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQ 659 (1157)
T ss_pred CCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999998872 2345567788999999999999999999998 6667 678899999999999999999999
Q ss_pred HHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhhCC
Q 004369 580 AEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREEK 621 (758)
Q Consensus 580 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 621 (758)
++++++..|+++..+..++.++...|++++|.++++.+.+..
T Consensus 660 l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 660 LAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 999999999999999999999999999999999999987643
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.93 E-value=3.9e-20 Score=211.75 Aligned_cols=558 Identities=11% Similarity=-0.021 Sum_probs=386.8
Q ss_pred hhhhhcCCCCCchhHHHHHHHHHHHcCCCCCcchHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcC
Q 004369 43 KLIQLNGNSEPVRSLGFQEALSVLTEGPKVQTSSYVSLLQECVNRKSLSNAEIIHAHIVKTGSHQDFFVMTFLVNVYGKC 122 (758)
Q Consensus 43 ~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 122 (758)
.+.+......|++++|++.|++.++..|.- ..++..+...+...|+.++|....+..++.. +.|...+..+. .+
T Consensus 48 f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n-~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld-P~n~~~~~~La-~i--- 121 (987)
T PRK09782 48 LDKALKAQKNNDEATAIREFEYIHQQVPDN-IPLTLYLAEAYRHFGHDDRARLLLEDQLKRH-PGDARLERSLA-AI--- 121 (987)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-cccHHHHHHHH-Hh---
Confidence 334444455799999999999999887763 6778899999999999999999999998875 45555555542 22
Q ss_pred CChHHHHHHHccCCC--CC-cchHHHHHHH--------HHhCCCchHHHHHHHHHHHcCCCCChhhHHHH-HHHhcccCC
Q 004369 123 GNMEEAQKVFDNLPR--IN-VVSWTSLISG--------YVQNSQPELAIHVFLDMLEAGNYPTNVTLGTA-LTACSSLES 190 (758)
Q Consensus 123 g~~~~A~~~f~~~~~--~~-~~~~~~li~~--------~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~~~~~~~~ 190 (758)
++.++|..+++++.. |+ ...+..+... |.+. ++|.+.++ .......|+..+.... .+.+...++
T Consensus 122 ~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~d 197 (987)
T PRK09782 122 PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQ 197 (987)
T ss_pred ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhC
Confidence 889999999999863 32 3334444333 6655 44555554 3333344455555555 888999999
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHHHHHhh-cCChHHHHHHHhccCCCCcchHHHHHHHHhhCCChhhHHHHHHHHHH
Q 004369 191 IRLGKQIHAYVVKYQTEDDTSVGNSLCSLYST-CGSLNSAIKAFNRIREKNVMSWTTVIGACGENGEAVQGLRFFSKMLS 269 (758)
Q Consensus 191 ~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~-~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 269 (758)
++.+..++..+.+.+.. +......|...|.. .++ ++|..+++...+.|...+..+...|.+.|+.++|.++++++..
T Consensus 198 w~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~ 275 (987)
T PRK09782 198 WSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKP 275 (987)
T ss_pred HHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcc
Confidence 99999999999998743 35556667778887 477 8888888765556888999999999999999999999998864
Q ss_pred CCCC-CChhhHHHH------------------------------HHHHcccCChHHHHHHHH------------------
Q 004369 270 EGIQ-PNEFTLTSI------------------------------SSVCGTMLSLRVGAQVHS------------------ 300 (758)
Q Consensus 270 ~g~~-p~~~t~~~l------------------------------l~~~~~~~~~~~a~~~~~------------------ 300 (758)
.-.. |+..++.-+ +.-+.+.+.++.++++..
T Consensus 276 ~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 355 (987)
T PRK09782 276 LFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVAT 355 (987)
T ss_pred cccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhcccc
Confidence 3221 332222222 222333344443333321
Q ss_pred -----------HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCC--CCee----echhHHHHHhhhchhhh-c-
Q 004369 301 -----------LGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSH--VNLV----TWNAMIAGHAQMMDLAK-D- 361 (758)
Q Consensus 301 -----------~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~----~~~~li~~~~~~~~~~~-~- 361 (758)
.+.+. .+.+....--+.-...+.|+.++|..+|+..-. ++.. .-+-++..|........ .
T Consensus 356 ~~~~~~~~~~~~~y~~-~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 434 (987)
T PRK09782 356 RNKAEALRLARLLYQQ-EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAK 434 (987)
T ss_pred CchhHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHH
Confidence 11111 011222223333344567888999999888755 2221 22244555555211000 0
Q ss_pred --hhh----------cCCChhHHHHHHHHhHh-CCCCC---CHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHH
Q 004369 362 --DLS----------AHNGGTEALSIFSKLNS-SGMKP---DLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVV 425 (758)
Q Consensus 362 --~l~----------~~g~~~~A~~l~~~m~~-~g~~p---~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~ 425 (758)
.|. -.|+..++...+..... .+..| +...+..+..++.. ++.++|...+....... |+...
T Consensus 435 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~ 511 (987)
T PRK09782 435 VAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQ 511 (987)
T ss_pred HHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHH
Confidence 000 02222222222222222 12223 45555555555555 78888999777776653 45444
Q ss_pred HhHHhhhHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhcc
Q 004369 426 GTALVNMYKKCGRIERASRVFVEMST--RTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQ-VTFVGALAACSNA 502 (758)
Q Consensus 426 ~~~Li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~ 502 (758)
...+...+...|++++|...|+++.. ++...+..+...+.+.|+.++|...+++..+.. |+. ..+..+...+...
T Consensus 512 ~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~ 589 (987)
T PRK09782 512 HRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIP 589 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhC
Confidence 44455556789999999999998763 445567777888999999999999999998853 543 3333444455567
Q ss_pred ccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHH
Q 004369 503 GMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAA 580 (758)
Q Consensus 503 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~ 580 (758)
|++++|...+++..+ +.|+...|..+..++.+.|+.++|+..+++. ...| +...++.+..++...|+.++|+..+
T Consensus 590 Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l 666 (987)
T PRK09782 590 GQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREML 666 (987)
T ss_pred CCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999975 4578889999999999999999999999998 7777 5677888999999999999999999
Q ss_pred HHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhhCC
Q 004369 581 EQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREEK 621 (758)
Q Consensus 581 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 621 (758)
+++++++|+++..+..++.+|...|++++|...++...+..
T Consensus 667 ~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 667 ERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999987643
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.90 E-value=1.7e-18 Score=198.39 Aligned_cols=567 Identities=8% Similarity=-0.033 Sum_probs=393.1
Q ss_pred cchHHhhhhcCCccccccchhhhhhhcCCCCCchhHHHHHHHHHHHcCCCCCcchHHHHHHHhhcCCCcHHHHHHHHHHH
Q 004369 22 SSSLATLKDKNHTVSYQRSGSKLIQLNGNSEPVRSLGFQEALSVLTEGPKVQTSSYVSLLQECVNRKSLSNAEIIHAHIV 101 (758)
Q Consensus 22 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 101 (758)
..++..+......-|.+......+...-...|+.++|...+++.++..+ +...|..++... ++.++|..+++.+.
T Consensus 61 ~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP--~n~~~~~~La~i---~~~~kA~~~ye~l~ 135 (987)
T PRK09782 61 ATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHP--GDARLERSLAAI---PVEVKSVTTVEELL 135 (987)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc--ccHHHHHHHHHh---ccChhHHHHHHHHH
Confidence 3444444444444444443344444444568999999999999987654 444444444333 88899999999999
Q ss_pred HhCCCCchhHHHHHHHH--------hhcCCChHHHHHHHccCCC-CCcchHHH-HHHHHHhCCCchHHHHHHHHHHHcCC
Q 004369 102 KTGSHQDFFVMTFLVNV--------YGKCGNMEEAQKVFDNLPR-INVVSWTS-LISGYVQNSQPELAIHVFLDMLEAGN 171 (758)
Q Consensus 102 ~~g~~~~~~~~~~li~~--------~~~~g~~~~A~~~f~~~~~-~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~ 171 (758)
+.. +.+..++..+... |.+.+...++++ .+.... ++...... +...|.+.|++++|++++.++.+.+.
T Consensus 136 ~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~p 213 (987)
T PRK09782 136 AQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNT 213 (987)
T ss_pred HhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCC
Confidence 875 4555666666665 777777777776 333222 23333344 48899999999999999999999864
Q ss_pred CCChhhHHHHHHHhcc-cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHhhcCChHHHHHHHhccCC-----CCcchHH
Q 004369 172 YPTNVTLGTALTACSS-LESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGSLNSAIKAFNRIRE-----KNVMSWT 245 (758)
Q Consensus 172 ~p~~~t~~~ll~~~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~-----~~~~~~~ 245 (758)
. +..-...+-.++.. .++ +.+..++.. .+..++.+...+.+.|.+.|+.++|.+++++++. |+..+|-
T Consensus 214 l-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~ 287 (987)
T PRK09782 214 L-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWL 287 (987)
T ss_pred C-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHH
Confidence 3 33334555556666 355 666666442 3446888999999999999999999999998863 1111111
Q ss_pred ------------------------------HHHHHHhhCCChhhHHHHHH-----------------------------H
Q 004369 246 ------------------------------TVIGACGENGEAVQGLRFFS-----------------------------K 266 (758)
Q Consensus 246 ------------------------------~li~~~~~~g~~~~A~~l~~-----------------------------~ 266 (758)
.++..+.+.++++-+.++.. .
T Consensus 288 ~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 367 (987)
T PRK09782 288 YLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARL 367 (987)
T ss_pred HHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHH
Confidence 11334445555554444321 1
Q ss_pred HHHCCCCCChhhHHHHHHHHcccCChHHHHHHHHHHHHh-C-CCCchhHHHHHHHHHHhcCC---HHHHHHHHccCCC--
Q 004369 267 MLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKL-G-YASNLRVRNSIMYLYLKCGL---VDEAQKLFDGMSH-- 339 (758)
Q Consensus 267 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g-~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~-- 339 (758)
|.+.. +-+....-.+.-.....|+.++|.+++...... + -..+....+-|+..|.+.+. ..++..+-..+..
T Consensus 368 ~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 446 (987)
T PRK09782 368 LYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAE 446 (987)
T ss_pred HHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccch
Confidence 11110 001111212222234567888899998887662 1 12245566688899998877 3344333221211
Q ss_pred -------------------------C---CeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCHHHH
Q 004369 340 -------------------------V---NLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTF 391 (758)
Q Consensus 340 -------------------------~---~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 391 (758)
| +...|..+...+. .++.++|+..+.+.... .|+....
T Consensus 447 ~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~------------~~~~~eAi~a~~~Al~~--~Pd~~~~ 512 (987)
T PRK09782 447 QRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYR------------DTLPGVALYAWLQAEQR--QPDAWQH 512 (987)
T ss_pred hHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHH------------hCCcHHHHHHHHHHHHh--CCchHHH
Confidence 1 2223333333332 46888899988887764 4776655
Q ss_pred HHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCCCChhHHHH---HHHHHHhcC
Q 004369 392 SSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMSTRTLISWTS---MITGFANHS 468 (758)
Q Consensus 392 ~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~---li~~~~~~g 468 (758)
..+..++...|++++|...+..+... +|+...+..+...+.+.|++++|...|++....++..++. +.......|
T Consensus 513 L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~G 590 (987)
T PRK09782 513 RAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPG 590 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCC
Confidence 45555667899999999999987654 3444455677888899999999999999877554333333 333444559
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 004369 469 LSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFI 548 (758)
Q Consensus 469 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 548 (758)
++++|+..|++..+ +.|+...+..+..++.+.|++++|...++...+. -+.+...++.+...+...|++++|++.+
T Consensus 591 r~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l 666 (987)
T PRK09782 591 QPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREML 666 (987)
T ss_pred CHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999998 5678888999999999999999999999999762 2334678889999999999999999999
Q ss_pred HHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhhCCC
Q 004369 549 KKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREEKL 622 (758)
Q Consensus 549 ~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 622 (758)
++. ...| +...+..+..++...|++++|+..++++++++|++..+....+++..+..+++.|.+-++..-.-.+
T Consensus 667 ~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 667 ERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 998 6677 6778999999999999999999999999999999999999999999999999999987777655443
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.88 E-value=2.8e-19 Score=181.11 Aligned_cols=442 Identities=13% Similarity=0.114 Sum_probs=330.8
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHhhc
Q 004369 144 TSLISGYVQNSQPELAIHVFLDMLEAGNYPTNVTLGTALTACSSLESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTC 223 (758)
Q Consensus 144 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~ 223 (758)
..|..-.-+.|++++|++.-...-+++ ..+..+...+-..+.+..+++...+--...++.. ..-..+|+.+.+.+-..
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHh
Confidence 344455567788888877665443332 1122222222223444455555444433333322 23356788888899999
Q ss_pred CChHHHHHHHhccCC---CCcchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHH-HHHcccCChHHHHHHH
Q 004369 224 GSLNSAIKAFNRIRE---KNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSIS-SVCGTMLSLRVGAQVH 299 (758)
Q Consensus 224 g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~~~~~~~~~~~a~~~~ 299 (758)
|++++|..+++.+.+ ..+..|..+..++...|+.+.|.+.|.+.++ +.|+.+...+-+ ......|++++|..-+
T Consensus 130 g~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~~cY 207 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAKACY 207 (966)
T ss_pred chHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhHHHH
Confidence 999999999988876 3566888999999999999999999988877 457665544432 2334467888888888
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCe---eechhHHHHHhhhchhhhchhhcCCChhHHHHHH
Q 004369 300 SLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSHVNL---VTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIF 376 (758)
Q Consensus 300 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~ 376 (758)
-++++.. +.-..+|+.|...+-..|++..|+..|++...-|+ ..|-.+-..|.. .+.+++|+..+
T Consensus 208 lkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke-----------~~~~d~Avs~Y 275 (966)
T KOG4626|consen 208 LKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKE-----------ARIFDRAVSCY 275 (966)
T ss_pred HHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHH-----------HhcchHHHHHH
Confidence 8777654 33456788888888889999999999988876443 234444444544 88888888888
Q ss_pred HHhHhCCCCCC-HHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcC---CC
Q 004369 377 SKLNSSGMKPD-LYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMS---TR 452 (758)
Q Consensus 377 ~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~---~~ 452 (758)
.+.... .|+ .+.+..+...|-..|.++.|..-++..++.. +--...|+.|..++-..|++.+|.+.+.+.. ..
T Consensus 276 ~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~ 352 (966)
T KOG4626|consen 276 LRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN 352 (966)
T ss_pred HHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc
Confidence 777653 554 4566666667778899999999998888753 2236788999999999999999999998866 33
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCC-HHHHHH
Q 004369 453 TLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPV-MDHYMC 530 (758)
Q Consensus 453 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 530 (758)
...+.+.|...|...|..++|..+|....+ +.|. ...++.|...|-+.|++++|...+++.. .+.|+ ...|+.
T Consensus 353 hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~N 427 (966)
T KOG4626|consen 353 HADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSN 427 (966)
T ss_pred cHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHh
Confidence 456788899999999999999999998887 6777 5678888888999999999999998885 57787 678999
Q ss_pred HHHHHHHcCCHHHHHHHHHHc-CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCch
Q 004369 531 LIDMFVRLGCIEEAFDFIKKM-DFEPN-EVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWE 608 (758)
Q Consensus 531 li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 608 (758)
|...|-..|+.+.|...+.+. .+.|. ....+.|...+...|+..+|+..++.+++++|+-+.+|..|+.+.--...|.
T Consensus 428 mGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~ 507 (966)
T KOG4626|consen 428 MGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWT 507 (966)
T ss_pred cchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhccc
Confidence 999999999999999999887 77774 5678899999999999999999999999999999999998888876666776
Q ss_pred h
Q 004369 609 D 609 (758)
Q Consensus 609 ~ 609 (758)
+
T Consensus 508 D 508 (966)
T KOG4626|consen 508 D 508 (966)
T ss_pred c
Confidence 6
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.86 E-value=1e-18 Score=176.98 Aligned_cols=415 Identities=12% Similarity=0.131 Sum_probs=333.3
Q ss_pred HHhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHhhcCChHHHHHHHhccCCC---CcchHHHHHHHHhhCCChhh
Q 004369 183 TACSSLESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGSLNSAIKAFNRIREK---NVMSWTTVIGACGENGEAVQ 259 (758)
Q Consensus 183 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~ 259 (758)
.-..+.|++.+|++.-..+-+.. +.+....-.+-..|.+..+++.....-....+. -..+|..+...+-..|+.++
T Consensus 56 h~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~~~ 134 (966)
T KOG4626|consen 56 HRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQLQD 134 (966)
T ss_pred HHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchHHH
Confidence 33445677777776544443322 112222223335666777766654433332222 34588899999999999999
Q ss_pred HHHHHHHHHHCCCCC-ChhhHHHHHHHHcccCChHHHHHHHHHHHHhCCCCc-hhHHHHHHHHHHhcCCHHHHHHHHccC
Q 004369 260 GLRFFSKMLSEGIQP-NEFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYASN-LRVRNSIMYLYLKCGLVDEAQKLFDGM 337 (758)
Q Consensus 260 A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m 337 (758)
|+.+++.|.+. +| ....|..+..++...|+.+.|.+.|...++.. |+ ..+.+.+....-..|++++|...+.+.
T Consensus 135 al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~cYlkA 210 (966)
T KOG4626|consen 135 ALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKACYLKA 210 (966)
T ss_pred HHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHHHHHH
Confidence 99999999984 45 45678889999999999999999999988764 43 344455666667789999999888776
Q ss_pred CC--CC-eeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCH-HHHHHHHHHHhcccchHHHHHHHHH
Q 004369 338 SH--VN-LVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDL-YTFSSILTICSRLVALEQGEQIHAL 413 (758)
Q Consensus 338 ~~--~~-~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~i~~~ 413 (758)
.+ |. .+.|+.+-..+.. +|+...|+..|++.... .|+- ..|-.+-..+...+.++.|...+..
T Consensus 211 i~~qp~fAiawsnLg~~f~~-----------~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~r 277 (966)
T KOG4626|consen 211 IETQPCFAIAWSNLGCVFNA-----------QGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLR 277 (966)
T ss_pred HhhCCceeeeehhcchHHhh-----------cchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHH
Confidence 54 43 4789999888888 99999999999998763 5543 4677777888888888888888877
Q ss_pred HHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCCC--C-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-H
Q 004369 414 TLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMSTR--T-LISWTSMITGFANHSLSHQALQLFEDMLLAGVRPN-Q 489 (758)
Q Consensus 414 ~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~--~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~ 489 (758)
+.... +....++..|...|-..|.++-|.+.+++..+. + ...||.|..++-..|+..+|...|.+.+. +.|+ .
T Consensus 278 Al~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~ha 354 (966)
T KOG4626|consen 278 ALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHA 354 (966)
T ss_pred HHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccH
Confidence 76643 345778888999999999999999999997743 3 46899999999999999999999999988 5777 5
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCC-HHHHHHHHHH
Q 004369 490 VTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPV-MDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEPN-EVIWSVFIAG 566 (758)
Q Consensus 490 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~ 566 (758)
...+.|...+...|.+++|..+|....+ +.|. ....+.|...|-..|++++|+..+++. .++|+ ...++.+...
T Consensus 355 dam~NLgni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt 431 (966)
T KOG4626|consen 355 DAMNNLGNIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNT 431 (966)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchH
Confidence 6889999999999999999999998854 5566 567899999999999999999999998 89996 5679999999
Q ss_pred HHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhhCC
Q 004369 567 CRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREEK 621 (758)
Q Consensus 567 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 621 (758)
|...|+.+.|.+.+.+++..+|.-..++..|+.+|-..|+..+|..-++...+..
T Consensus 432 ~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 432 YKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred HHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 9999999999999999999999999999999999999999999999999887643
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.83 E-value=8.7e-17 Score=181.48 Aligned_cols=249 Identities=11% Similarity=0.049 Sum_probs=205.7
Q ss_pred CCChhHHHHHHHHhHhCC-CCC-CHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHH
Q 004369 366 HNGGTEALSIFSKLNSSG-MKP-DLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERAS 443 (758)
Q Consensus 366 ~g~~~~A~~l~~~m~~~g-~~p-~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~ 443 (758)
.+.+++|++.|++....+ ..| +...+..+...+...|++++|...+...++.. +.+...+..+...|...|++++|.
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHH
Confidence 578999999999998764 344 34566677777788999999999999998763 334667888999999999999999
Q ss_pred HHHHhcC---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhc
Q 004369 444 RVFVEMS---TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEY 519 (758)
Q Consensus 444 ~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 519 (758)
..|++.. ..+...|..+...+...|++++|+..|++..+. .|+ ...+..+..++.+.|++++|...|+...+.
T Consensus 386 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~- 462 (615)
T TIGR00990 386 EDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN- 462 (615)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence 9999865 346788999999999999999999999999984 555 566777888899999999999999998763
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCCH-HH-------HHHHHHHHHHcCChhHHHHHHHHHhccCCCC
Q 004369 520 KIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEPNE-VI-------WSVFIAGCRRHGNMELGFYAAEQLLKLKPKD 590 (758)
Q Consensus 520 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~-------~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 590 (758)
.+.+...|+.+..+|...|++++|++.|++. ...|+. .+ ++..+..+...|++++|...++++++++|++
T Consensus 463 -~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~ 541 (615)
T TIGR00990 463 -FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPEC 541 (615)
T ss_pred -CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 3344788999999999999999999999997 444431 11 2222223344699999999999999999999
Q ss_pred chhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369 591 CESYAMLLDIFVSAGRWEDVAVVKNLTRE 619 (758)
Q Consensus 591 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 619 (758)
...+..|+.+|...|++++|.+.++...+
T Consensus 542 ~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 542 DIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 99999999999999999999999998875
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.82 E-value=5.1e-18 Score=181.75 Aligned_cols=291 Identities=15% Similarity=0.128 Sum_probs=216.7
Q ss_pred HHHhcCCHHHHHHHHccCCCC---CeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCC---HHHHHH
Q 004369 320 LYLKCGLVDEAQKLFDGMSHV---NLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPD---LYTFSS 393 (758)
Q Consensus 320 ~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~ 393 (758)
.+...|++++|...|.++.+. +..+|..+...+.+ .|++++|+.+++.+...+..++ ...+..
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-----------~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 112 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRR-----------RGEVDRAIRIHQNLLSRPDLTREQRLLALQE 112 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-----------cCcHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 345566677777777766542 22345556666666 7777777777777766432221 234566
Q ss_pred HHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCCCC--------hhHHHHHHHHHH
Q 004369 394 ILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMSTRT--------LISWTSMITGFA 465 (758)
Q Consensus 394 ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~--------~~~~~~li~~~~ 465 (758)
+...+...|+++.|..++..+.+.. +.+..+++.++..|.+.|++++|.+.|+.+.+.+ ...|..+...+.
T Consensus 113 La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 191 (389)
T PRK11788 113 LGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQAL 191 (389)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Confidence 6677777777777877777776642 4456777788888888888888888888775321 124566777888
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCC--HHHHHHHHHHHHHcCCHH
Q 004369 466 NHSLSHQALQLFEDMLLAGVRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPV--MDHYMCLIDMFVRLGCIE 542 (758)
Q Consensus 466 ~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~ 542 (758)
+.|++++|+..|+++.+. .|+ ...+..+...+.+.|++++|.++++++.+. .|+ ...++.++.+|.+.|+++
T Consensus 192 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~ 266 (389)
T PRK11788 192 ARGDLDAARALLKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEA 266 (389)
T ss_pred hCCCHHHHHHHHHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHH
Confidence 899999999999999874 344 556777778889999999999999998763 233 456788999999999999
Q ss_pred HHHHHHHHc-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhh---CCCchhHHHHHHHhh
Q 004369 543 EAFDFIKKM-DFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVS---AGRWEDVAVVKNLTR 618 (758)
Q Consensus 543 ~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~ 618 (758)
+|...++++ ...|+...+..++..+.+.|++++|...++++++..|++. .+..+...+.. .|+.+++..+++.|.
T Consensus 267 ~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~ 345 (389)
T PRK11788 267 EGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLV 345 (389)
T ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHH
Confidence 999999998 6678777778899999999999999999999999999875 45555555443 568999999999999
Q ss_pred hCCCCCCCce
Q 004369 619 EEKLSETDDW 628 (758)
Q Consensus 619 ~~~~~~~~~~ 628 (758)
+++++..|.+
T Consensus 346 ~~~~~~~p~~ 355 (389)
T PRK11788 346 GEQLKRKPRY 355 (389)
T ss_pred HHHHhCCCCE
Confidence 9999888873
No 18
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.82 E-value=6.4e-16 Score=165.54 Aligned_cols=555 Identities=11% Similarity=0.053 Sum_probs=388.4
Q ss_pred hhcCCCCCchhHHHHHHHHHHHcCCC--CCcchHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcC-
Q 004369 46 QLNGNSEPVRSLGFQEALSVLTEGPK--VQTSSYVSLLQECVNRKSLSNAEIIHAHIVKTGSHQDFFVMTFLVNVYGKC- 122 (758)
Q Consensus 46 ~~~~~~~~~~~~a~~~~~~~~~~~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~- 122 (758)
+..+...++|..|+.+|...+...+. ||.. ..+-..+.+.++.+.|+..|.+.++.. +.++.++-.|--.-...
T Consensus 171 A~i~ynkkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a~~ralqLd-p~~v~alv~L~~~~l~~~ 247 (1018)
T KOG2002|consen 171 ARIAYNKKDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALLAFERALQLD-PTCVSALVALGEVDLNFN 247 (1018)
T ss_pred HHHHhccccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHHHHHHHhcC-hhhHHHHHHHHHHHHHcc
Confidence 34556789999999999998766543 4443 223345578899999999999998765 22233332222222222
Q ss_pred --CChHHHHHHHccCC---CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHcCCC--CChhhHHHHHHHhcccCChHHHH
Q 004369 123 --GNMEEAQKVFDNLP---RINVVSWTSLISGYVQNSQPELAIHVFLDMLEAGNY--PTNVTLGTALTACSSLESIRLGK 195 (758)
Q Consensus 123 --g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~t~~~ll~~~~~~~~~~~a~ 195 (758)
..+..+..++...- ..|++..|.|-+-|.-.|+++.+..+...+...-.. .-...|-.+-+++-..|+++.|.
T Consensus 248 d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~ 327 (1018)
T KOG2002|consen 248 DSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAF 327 (1018)
T ss_pred chHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHH
Confidence 23445555554432 357888999999999999999999999998765311 12345778889999999999999
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHhhcCChHHHHHHHhccCC--C-CcchHHHHHHHHhhCC----ChhhHHHHHHHHH
Q 004369 196 QIHAYVVKYQTEDDTSVGNSLCSLYSTCGSLNSAIKAFNRIRE--K-NVMSWTTVIGACGENG----EAVQGLRFFSKML 268 (758)
Q Consensus 196 ~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g----~~~~A~~l~~~m~ 268 (758)
..+-+..+.....-+.-+-.|..+|.+.|+++.|...|+.+.. | +..+.-.|...|+..+ ..+.|..++.+..
T Consensus 328 ~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~ 407 (1018)
T KOG2002|consen 328 KYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVL 407 (1018)
T ss_pred HHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHH
Confidence 9999888764333234455688999999999999999999876 3 3345555556666654 4466666666665
Q ss_pred HCCCCCChhhHHHHHHHHcccCChHHHHHHHHHH----HHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCC-----
Q 004369 269 SEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLG----IKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSH----- 339 (758)
Q Consensus 269 ~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~----~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----- 339 (758)
+.- ..|...|..+-..+-. ++......++..+ ...+-.+...+.|.+...+...|+++.|...|+....
T Consensus 408 ~~~-~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~ 485 (1018)
T KOG2002|consen 408 EQT-PVDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEV 485 (1018)
T ss_pred hcc-cccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhh
Confidence 542 3345556555555443 3433335555543 3456668888999999999999999999999987643
Q ss_pred --CCee-ech-----hHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCHH-HHHHHHHHHhcccchHHHHHH
Q 004369 340 --VNLV-TWN-----AMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLY-TFSSILTICSRLVALEQGEQI 410 (758)
Q Consensus 340 --~~~~-~~~-----~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~i 410 (758)
+|.. +-+ .+...+-. .++++.|.+.|...... .|.-+ .|..++......+...++...
T Consensus 486 ~n~de~~~~~lt~~YNlarl~E~-----------l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~ 552 (1018)
T KOG2002|consen 486 ANKDEGKSTNLTLKYNLARLLEE-----------LHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLL 552 (1018)
T ss_pred cCccccccchhHHHHHHHHHHHh-----------hhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHH
Confidence 2321 111 11222222 77889999999999875 45544 344443333445677888888
Q ss_pred HHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcC-----CCChhHHHHHHHHHH------------hcCCHHHH
Q 004369 411 HALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMS-----TRTLISWTSMITGFA------------NHSLSHQA 473 (758)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~------------~~g~~~~A 473 (758)
+..+.... ..++.+++-+.+.|.+...+..|.+-|..+. .+|..+.-+|.+.|. ..+..++|
T Consensus 553 lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KA 631 (1018)
T KOG2002|consen 553 LKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKA 631 (1018)
T ss_pred HHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHH
Confidence 88777653 4566777778889999999988888666554 224444444544332 23457899
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc--
Q 004369 474 LQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-- 551 (758)
Q Consensus 474 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-- 551 (758)
+++|.+.++.. +-|...-+.+.-.++..|++.+|..+|.+.++.. .-...+|-.+...|..+|++-.|+++|+..
T Consensus 632 lq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~--~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lk 708 (1018)
T KOG2002|consen 632 LQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT--SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLK 708 (1018)
T ss_pred HHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH--hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988853 3356777888888899999999999999998842 234457888999999999999999999876
Q ss_pred --CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhh-------------------hCCCchhH
Q 004369 552 --DFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFV-------------------SAGRWEDV 610 (758)
Q Consensus 552 --~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~-------------------~~g~~~~a 610 (758)
....+..+...|..++...|.+.+|.+.+..+..+.|.|+..-..++-+.. ..+..++|
T Consensus 709 kf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a 788 (1018)
T KOG2002|consen 709 KFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEA 788 (1018)
T ss_pred HhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 333477889999999999999999999999999999998876655554432 33456777
Q ss_pred HHHHHHhhhCCC
Q 004369 611 AVVKNLTREEKL 622 (758)
Q Consensus 611 ~~~~~~m~~~~~ 622 (758)
.++|..+...+-
T Consensus 789 ~r~F~~ls~~~d 800 (1018)
T KOG2002|consen 789 RRLFTELSKNGD 800 (1018)
T ss_pred HHHHHHHHhcCC
Confidence 888888876443
No 19
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.82 E-value=5e-18 Score=181.80 Aligned_cols=305 Identities=13% Similarity=0.103 Sum_probs=191.0
Q ss_pred HHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCC---hhHHHHHHHHHhhcCCh
Q 004369 150 YVQNSQPELAIHVFLDMLEAGNYPTNVTLGTALTACSSLESIRLGKQIHAYVVKYQTEDD---TSVGNSLCSLYSTCGSL 226 (758)
Q Consensus 150 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~Li~~y~~~g~~ 226 (758)
+...|++++|+..|.++.+.+ +.+..++..+...+...|+++.|..+++.+++.+..++ ..++..|...|.+.|++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 344555556666666655532 11233444455555555555555555555554321111 23566777888888888
Q ss_pred HHHHHHHhccCC---CCcchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHHHHHHHHHH
Q 004369 227 NSAIKAFNRIRE---KNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGI 303 (758)
Q Consensus 227 ~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 303 (758)
++|..+|+++.+ .+..+++.++..+.+.|++++|++.++++...+..++...
T Consensus 124 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------------------------- 178 (389)
T PRK11788 124 DRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE------------------------- 178 (389)
T ss_pred HHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH-------------------------
Confidence 888888888865 3556788888888888888888888888876542221100
Q ss_pred HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCC--C-CeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhH
Q 004369 304 KLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSH--V-NLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLN 380 (758)
Q Consensus 304 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~ 380 (758)
....+..+...+.+.|++++|...|+++.+ | +...+..+...|.+ .|++++|+++|+++.
T Consensus 179 ------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-----------~g~~~~A~~~~~~~~ 241 (389)
T PRK11788 179 ------IAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALA-----------QGDYAAAIEALERVE 241 (389)
T ss_pred ------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHH-----------CCCHHHHHHHHHHHH
Confidence 011234455566667777777777776643 2 23345556666777 788888888888877
Q ss_pred hCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcC--CCChhHHH
Q 004369 381 SSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMS--TRTLISWT 458 (758)
Q Consensus 381 ~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~ 458 (758)
..+......++..+..++...|++++|...+..+.+.. |+...+..++..|.+.|++++|..+|+++. .|+...++
T Consensus 242 ~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~ 319 (389)
T PRK11788 242 EQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFH 319 (389)
T ss_pred HHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHH
Confidence 64322223456666777777777777777777766653 444455677777777888888888777655 35666777
Q ss_pred HHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccH
Q 004369 459 SMITGFAN---HSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMV 505 (758)
Q Consensus 459 ~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 505 (758)
.++..+.. .|+.++++.++++|.+.+++|+.. .+|.+.|..
T Consensus 320 ~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~------~~c~~cg~~ 363 (389)
T PRK11788 320 RLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR------YRCRNCGFT 363 (389)
T ss_pred HHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC------EECCCCCCC
Confidence 77766654 457777888888887776666654 236555543
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.79 E-value=1.2e-15 Score=175.37 Aligned_cols=401 Identities=10% Similarity=-0.004 Sum_probs=215.5
Q ss_pred HHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHhhcCCh
Q 004369 147 ISGYVQNSQPELAIHVFLDMLEAGNYPTNVTLGTALTACSSLESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGSL 226 (758)
Q Consensus 147 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~ 226 (758)
+......|+.++|++++.+..... ..+...+..+..++...|++++|.++++.+++.. +.+......+...+
T Consensus 22 ~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l------ 93 (765)
T PRK10049 22 LQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTL------ 93 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH------
Confidence 344455666666666666654411 1222234444445555555555555555554432 11233333444444
Q ss_pred HHHHHHHhccCCCCcchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHHHHHHHHHHHhC
Q 004369 227 NSAIKAFNRIREKNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKLG 306 (758)
Q Consensus 227 ~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 306 (758)
...|++++|+..+++..+. .|+...+..+..++...|+.+.|...+..+++..
T Consensus 94 -------------------------~~~g~~~eA~~~l~~~l~~--~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~ 146 (765)
T PRK10049 94 -------------------------ADAGQYDEALVKAKQLVSG--APDKANLLALAYVYKRAGRHWDELRAMTQALPRA 146 (765)
T ss_pred -------------------------HHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 4445555555555444443 1221113334444444455555555555544443
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCee--------echhHHHHHhhhchhhhchhhcCCCh---hHHHHH
Q 004369 307 YASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSHVNLV--------TWNAMIAGHAQMMDLAKDDLSAHNGG---TEALSI 375 (758)
Q Consensus 307 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--------~~~~li~~~~~~~~~~~~~l~~~g~~---~~A~~l 375 (758)
+.+..++..+..++.+.|..+.|.+.++.... ++. ....++..+.. ..+...+++ ++|++.
T Consensus 147 -P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~------~~~~~~~r~~~ad~Al~~ 218 (765)
T PRK10049 147 -PQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFM------PTRSEKERYAIADRALAQ 218 (765)
T ss_pred -CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcc------cccChhHHHHHHHHHHHH
Confidence 33444455566677777777878877776654 111 01111111110 000012334 778888
Q ss_pred HHHhHhC-CCCCCHH-HHHH----HHHHHhcccchHHHHHHHHHHHHcCCC-ChHHHHhHHhhhHHhcCCHHHHHHHHHh
Q 004369 376 FSKLNSS-GMKPDLY-TFSS----ILTICSRLVALEQGEQIHALTLKTGFL-SDVVVGTALVNMYKKCGRIERASRVFVE 448 (758)
Q Consensus 376 ~~~m~~~-g~~p~~~-t~~~----ll~a~~~~~~~~~a~~i~~~~~~~~~~-~~~~~~~~Li~~y~~~g~~~~A~~~~~~ 448 (758)
++.+.+. ...|+.. .+.. .+.++...++.++|...++.+.+.+.+ |+. ....+...|...|++++|+..|++
T Consensus 219 ~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~ 297 (765)
T PRK10049 219 YDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTE 297 (765)
T ss_pred HHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHH
Confidence 8888754 2233221 1111 133445667788888888887776522 221 222246677778888888888877
Q ss_pred cCCCC-------hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----------CCCCH---HHHHHHHHHHhccccHHH
Q 004369 449 MSTRT-------LISWTSMITGFANHSLSHQALQLFEDMLLAG-----------VRPNQ---VTFVGALAACSNAGMVYE 507 (758)
Q Consensus 449 ~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----------~~p~~---~t~~~ll~a~~~~g~~~~ 507 (758)
+...+ ...+..+..++...|++++|+++++++.... -.|+. ..+..+...+...|++++
T Consensus 298 ~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~e 377 (765)
T PRK10049 298 LFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQ 377 (765)
T ss_pred HhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHH
Confidence 65322 2234556667777788888888888777642 01221 123344455666677777
Q ss_pred HHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHhc
Q 004369 508 ALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEPN-EVIWSVFIAGCRRHGNMELGFYAAEQLLK 585 (758)
Q Consensus 508 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 585 (758)
|++.++++... .+.+...+..+..++...|++++|++.+++. ...|| ...+..++......|++++|+..++++++
T Consensus 378 A~~~l~~al~~--~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 378 AEMRARELAYN--APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 77777776542 2333556666677777777777777777766 55563 44555555666666777777777777777
Q ss_pred cCCCCchh
Q 004369 586 LKPKDCES 593 (758)
Q Consensus 586 ~~p~~~~~ 593 (758)
..|+++.+
T Consensus 456 ~~Pd~~~~ 463 (765)
T PRK10049 456 REPQDPGV 463 (765)
T ss_pred hCCCCHHH
Confidence 77776543
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.78 E-value=9.1e-16 Score=172.50 Aligned_cols=350 Identities=11% Similarity=-0.030 Sum_probs=258.8
Q ss_pred hcCChHHHHHHHhccCC------CCcchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHH
Q 004369 222 TCGSLNSAIKAFNRIRE------KNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVG 295 (758)
Q Consensus 222 ~~g~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 295 (758)
+..+++.-.-+|...++ .+......++..+.+.|++++|+.+++........+.. .+..+..+....|+++.|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~-~l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRD-LLRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchh-HHHHHhhhHhhcCCHHHH
Confidence 34455554455554443 12233445667778888888888888888776433333 333444555668888888
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCC---CCeeechhHHHHHhhhchhhhchhhcCCChhHH
Q 004369 296 AQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSH---VNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEA 372 (758)
Q Consensus 296 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A 372 (758)
.+.+..+++.. +.+...+..+...+.+.|++++|...|++... .+...|..+...+.+ .|++++|
T Consensus 96 ~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~-----------~g~~~eA 163 (656)
T PRK15174 96 LQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVL-----------MDKELQA 163 (656)
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-----------CCChHHH
Confidence 88888888765 45566778888888999999999999888755 344567777788888 8999999
Q ss_pred HHHHHHhHhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcC--
Q 004369 373 LSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMS-- 450 (758)
Q Consensus 373 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~-- 450 (758)
...++++......+.. .+.. +..+...|++++|...+..+.+....++......+...+.+.|++++|...|++..
T Consensus 164 ~~~~~~~~~~~P~~~~-a~~~-~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~ 241 (656)
T PRK15174 164 ISLARTQAQEVPPRGD-MIAT-CLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR 241 (656)
T ss_pred HHHHHHHHHhCCCCHH-HHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 9999888765332222 2222 33467789999999988887776433444455566778888999999999998866
Q ss_pred -CCChhHHHHHHHHHHhcCCHHH----HHHHHHHHHHcCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCC
Q 004369 451 -TRTLISWTSMITGFANHSLSHQ----ALQLFEDMLLAGVRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPV 524 (758)
Q Consensus 451 -~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~ 524 (758)
..+...+..+...|...|++++ |+..|++..+. .|+ ...+..+...+...|++++|...++.+.+. .|+
T Consensus 242 ~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l---~P~ 316 (656)
T PRK15174 242 GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT---HPD 316 (656)
T ss_pred CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCC
Confidence 3356778888999999999885 89999999874 565 567888888999999999999999998763 344
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCCHHH-HHHHHHHHHHcCChhHHHHHHHHHhccCCCCc
Q 004369 525 -MDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEPNEVI-WSVFIAGCRRHGNMELGFYAAEQLLKLKPKDC 591 (758)
Q Consensus 525 -~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 591 (758)
...+..+...|.+.|++++|++.++++ ...|+... +..+..++...|+.++|...++++++..|++.
T Consensus 317 ~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 317 LPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 566777889999999999999999988 56676544 44456778899999999999999999998853
No 22
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.78 E-value=4.8e-15 Score=158.94 Aligned_cols=543 Identities=13% Similarity=0.082 Sum_probs=394.8
Q ss_pred hhHHHHHHHHHHHcCCCCCcchHHHHHHHhh--cCCCcHHHHHHHHHHHHhC--CCCchhHHHHHHHHhhcCCChHHHHH
Q 004369 55 RSLGFQEALSVLTEGPKVQTSSYVSLLQECV--NRKSLSNAEIIHAHIVKTG--SHQDFFVMTFLVNVYGKCGNMEEAQK 130 (758)
Q Consensus 55 ~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~ 130 (758)
.+.|...|...++..+. | ....+.+||. ..+++..|..+|..++... ..+|+.+.- -..+.++|+.+.|+.
T Consensus 146 ~~~A~a~F~~Vl~~sp~-N--il~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgi--g~Cf~kl~~~~~a~~ 220 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPD-N--ILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGI--GHCFWKLGMSEKALL 220 (1018)
T ss_pred HHHHHHHHHHHHhhCCc-c--hHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchh--hhHHHhccchhhHHH
Confidence 68899999988876543 3 3455666665 5679999999999976643 456665432 245678999999999
Q ss_pred HHccCCCCCcchHHHHHHHHH------hCCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHh
Q 004369 131 VFDNLPRINVVSWTSLISGYV------QNSQPELAIHVFLDMLEAGNYPTNVTLGTALTACSSLESIRLGKQIHAYVVKY 204 (758)
Q Consensus 131 ~f~~~~~~~~~~~~~li~~~~------~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 204 (758)
.|....+.|+..-++++.... ....+..++.++...-... .-|+...+.|..-+.-.|+...+..+...+++.
T Consensus 221 a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~ 299 (1018)
T KOG2002|consen 221 AFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKN 299 (1018)
T ss_pred HHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHh
Confidence 999988877765555554321 2234566666666655432 236778888888899999999999999999886
Q ss_pred CCCCC--hhHHHHHHHHHhhcCChHHHHHHHhccCC--CCc--chHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCC-hh
Q 004369 205 QTEDD--TSVGNSLCSLYSTCGSLNSAIKAFNRIRE--KNV--MSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPN-EF 277 (758)
Q Consensus 205 g~~~~--~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ 277 (758)
..... ...|--+.++|...|++++|...|-+... +|. ..+--+...|.+.|+.+.+...|+..... .|| ..
T Consensus 300 t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--~p~~~e 377 (1018)
T KOG2002|consen 300 TENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--LPNNYE 377 (1018)
T ss_pred hhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh--CcchHH
Confidence 53221 23466688999999999999999988766 333 34556778899999999999999999875 354 45
Q ss_pred hHHHHHHHHcccC----ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH------HHHHHHHccC-CCCCeeech
Q 004369 278 TLTSISSVCGTML----SLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLV------DEAQKLFDGM-SHVNLVTWN 346 (758)
Q Consensus 278 t~~~ll~~~~~~~----~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~------~~A~~~~~~m-~~~~~~~~~ 346 (758)
|...+-..|+..+ ..+.|..+.....+.- +.|...|-.+..+|-...-+ ..|..++..- ....+...|
T Consensus 378 tm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LN 456 (1018)
T KOG2002|consen 378 TMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLN 456 (1018)
T ss_pred HHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 6666666665554 4566677777666654 66777888888777664433 3344333222 224556678
Q ss_pred hHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhC---CCCCCH-----HHH-HHHHHHHhcccchHHHHHHHHHHHHc
Q 004369 347 AMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSS---GMKPDL-----YTF-SSILTICSRLVALEQGEQIHALTLKT 417 (758)
Q Consensus 347 ~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~---g~~p~~-----~t~-~~ll~a~~~~~~~~~a~~i~~~~~~~ 417 (758)
.+...+.. .|.+++|...|.+.... ...+|. .|. -.+.......++.+.|.+.+..+.+.
T Consensus 457 Nvaslhf~-----------~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke 525 (1018)
T KOG2002|consen 457 NVASLHFR-----------LGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE 525 (1018)
T ss_pred hHHHHHHH-----------hcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 88888888 99999999999987654 223333 222 23344456677899999999999886
Q ss_pred CCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHH
Q 004369 418 GFLSDVVVGTALVNMYKKCGRIERASRVFVEMS---TRTLISWTSMITGFANHSLSHQALQLFEDMLLAG-VRPNQVTFV 493 (758)
Q Consensus 418 ~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~ 493 (758)
. +.-+..|--|..+-...+...+|...+.... ..|+..|+-+...+.....+..|.+-|+...+.- ..+|..+..
T Consensus 526 h-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Ysli 604 (1018)
T KOG2002|consen 526 H-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLI 604 (1018)
T ss_pred C-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHH
Confidence 3 2233344444444444577889999998866 5577888888888999999999988777766532 347888888
Q ss_pred HHHHHHhc------------cccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc--CCCCCHHH
Q 004369 494 GALAACSN------------AGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM--DFEPNEVI 559 (758)
Q Consensus 494 ~ll~a~~~------------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~ 559 (758)
+|.+.|.. .+..+.|+++|.++.+ .-+-+...-|-+.-.++..|++.+|..+|.+. ...-+..+
T Consensus 605 aLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv 682 (1018)
T KOG2002|consen 605 ALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDV 682 (1018)
T ss_pred HhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCce
Confidence 88776643 3456788888888875 34456777788889999999999999999988 22335678
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhccC--CCCchhHHHHHHHhhhCCCchhHHHHHHHhhhC
Q 004369 560 WSVFIAGCRRHGNMELGFYAAEQLLKLK--PKDCESYAMLLDIFVSAGRWEDVAVVKNLTREE 620 (758)
Q Consensus 560 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 620 (758)
|-.+...|...|++-.|.++|+..++.. .+++.+...|+.++.+.|+|.+|.+........
T Consensus 683 ~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 683 WLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 9999999999999999999999998753 467888999999999999999999988877654
No 23
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.78 E-value=2.3e-15 Score=173.05 Aligned_cols=395 Identities=9% Similarity=0.006 Sum_probs=295.1
Q ss_pred CChhHHHHHHHHHhhcCChHHHHHHHhccCC---CCcchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCC-hhhHHHHH
Q 004369 208 DDTSVGNSLCSLYSTCGSLNSAIKAFNRIRE---KNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPN-EFTLTSIS 283 (758)
Q Consensus 208 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll 283 (758)
.++....-.+......|+.++|.+++.+... .+...+..+...+.+.|++++|.++|++..+. .|+ ......+.
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la 90 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLI 90 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 3444555566777888999999999988764 23345888889999999999999999998875 344 45566777
Q ss_pred HHHcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCC--C-CeeechhHHHHHhhhchhhh
Q 004369 284 SVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSH--V-NLVTWNAMIAGHAQMMDLAK 360 (758)
Q Consensus 284 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~ 360 (758)
..+...|+.+.|...+..+++.. +.+.. +..+..++...|+.++|...++++.+ | +...+..+...+..
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~------ 162 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRN------ 162 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH------
Confidence 78889999999999999999874 55556 88899999999999999999999876 3 33445556666666
Q ss_pred chhhcCCChhHHHHHHHHhHhCCCCCCHH------HHHHHHHHHh-----cccch---HHHHHHHHHHHHc-CCCChHH-
Q 004369 361 DDLSAHNGGTEALSIFSKLNSSGMKPDLY------TFSSILTICS-----RLVAL---EQGEQIHALTLKT-GFLSDVV- 424 (758)
Q Consensus 361 ~~l~~~g~~~~A~~l~~~m~~~g~~p~~~------t~~~ll~a~~-----~~~~~---~~a~~i~~~~~~~-~~~~~~~- 424 (758)
.+..++|+..++.... .|+.. .....+.... ..+++ +.|.+.++.+.+. ...|+..
T Consensus 163 -----~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~ 234 (765)
T PRK10049 163 -----NRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATA 234 (765)
T ss_pred -----CCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccch
Confidence 8999999999886654 33320 1111222221 11223 6677777777754 2222221
Q ss_pred H-HhH---HhhhHHhcCCHHHHHHHHHhcCCCC---hh-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHH
Q 004369 425 V-GTA---LVNMYKKCGRIERASRVFVEMSTRT---LI-SWTSMITGFANHSLSHQALQLFEDMLLAGVRP---NQVTFV 493 (758)
Q Consensus 425 ~-~~~---Li~~y~~~g~~~~A~~~~~~~~~~~---~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~ 493 (758)
. ..+ .+..+...|++++|...|+++...+ +. .--.+...|...|++++|+..|+++....... ......
T Consensus 235 ~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~ 314 (765)
T PRK10049 235 DYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELA 314 (765)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHH
Confidence 1 111 1233456799999999999988542 11 12225678999999999999999988643111 123456
Q ss_pred HHHHHHhccccHHHHHHHHHHhhhhcC----------CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHH
Q 004369 494 GALAACSNAGMVYEALGYFEMMQKEYK----------IKPV---MDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEV 558 (758)
Q Consensus 494 ~ll~a~~~~g~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~ 558 (758)
.+..++...|++++|.++++.+.+... -.|+ ...+..+...+...|++++|+++++++ ...| +..
T Consensus 315 ~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~ 394 (765)
T PRK10049 315 DLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQG 394 (765)
T ss_pred HHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 666788999999999999999876311 1123 235567888999999999999999998 5556 677
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhhC
Q 004369 559 IWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREE 620 (758)
Q Consensus 559 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 620 (758)
.+..+...+...|+.++|+..++++++++|+++..+..++..+...|+|++|..+++.+.+.
T Consensus 395 l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 395 LRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999999999999998764
No 24
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.76 E-value=8.1e-15 Score=165.51 Aligned_cols=437 Identities=12% Similarity=0.028 Sum_probs=286.5
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHhh
Q 004369 143 WTSLISGYVQNSQPELAIHVFLDMLEAGNYPTNVTLGTALTACSSLESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYST 222 (758)
Q Consensus 143 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~ 222 (758)
+......+.+.|++++|+..|++..+ +.|+...|..+..++...|+++.|...+..+++.. +.+...+..+...|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 44556677778888888888888765 45677777777777888888888888888877753 2245567777788888
Q ss_pred cCChHHHHHHHhccCCCC---cchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHHHHHH
Q 004369 223 CGSLNSAIKAFNRIREKN---VMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVH 299 (758)
Q Consensus 223 ~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 299 (758)
.|++++|..-|......+ ......++..+.. ..+.....+..+.. .++...+..+.. +...........-+
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~ 280 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGL 280 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhh
Confidence 888888887775443211 1111111111111 12222222222221 111111111111 11100000000000
Q ss_pred HHHHHhCCCCchhHHHHHHHHH------HhcCCHHHHHHHHccCCCC------CeeechhHHHHHhhhchhhhchhhcCC
Q 004369 300 SLGIKLGYASNLRVRNSIMYLY------LKCGLVDEAQKLFDGMSHV------NLVTWNAMIAGHAQMMDLAKDDLSAHN 367 (758)
Q Consensus 300 ~~~~~~g~~~~~~~~~~li~~~------~~~g~~~~A~~~~~~m~~~------~~~~~~~li~~~~~~~~~~~~~l~~~g 367 (758)
.... ..+......++..+ ...+++++|.+.|+...+. +...|+.+...+.. .|
T Consensus 281 ~~~~----~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~-----------~g 345 (615)
T TIGR00990 281 EDSN----ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCL-----------KG 345 (615)
T ss_pred hccc----ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH-----------cC
Confidence 0000 00111111111111 2246788888888876542 23456666667777 99
Q ss_pred ChhHHHHHHHHhHhCCCCCC-HHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHH
Q 004369 368 GGTEALSIFSKLNSSGMKPD-LYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVF 446 (758)
Q Consensus 368 ~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~ 446 (758)
++++|+..|++..+. .|+ ...|..+...+...|++++|...+..+++.. +.+..++..+...|...|++++|...|
T Consensus 346 ~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 422 (615)
T TIGR00990 346 KHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDY 422 (615)
T ss_pred CHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999998875 454 4577777888889999999999999888764 456788889999999999999999999
Q ss_pred HhcC---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCC
Q 004369 447 VEMS---TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIK 522 (758)
Q Consensus 447 ~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 522 (758)
++.. ..+...|..+...+.+.|++++|+..|++..+. .|+ ...+..+...+...|++++|...|+...+. .
T Consensus 423 ~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~ 497 (615)
T TIGR00990 423 QKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL---E 497 (615)
T ss_pred HHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---C
Confidence 9876 335677888899999999999999999999874 455 677888888999999999999999998752 2
Q ss_pred CCH--------HHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCch
Q 004369 523 PVM--------DHYMCLIDMFVRLGCIEEAFDFIKKM-DFEPN-EVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCE 592 (758)
Q Consensus 523 p~~--------~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 592 (758)
|+. ..++.....+...|++++|.+++++. ...|+ ...+..+...+...|++++|...+++++++.+....
T Consensus 498 p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 498 KETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred CccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 321 11222233444579999999999987 66674 557899999999999999999999999998776433
Q ss_pred hHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369 593 SYAMLLDIFVSAGRWEDVAVVKNLTRE 619 (758)
Q Consensus 593 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 619 (758)
.+ ....|.+|.++....++
T Consensus 578 ~~--------~a~~~~~a~~~~~~~~~ 596 (615)
T TIGR00990 578 LV--------QAISYAEATRTQIQVQE 596 (615)
T ss_pred HH--------HHHHHHHHHHHHHHHHH
Confidence 21 22345556666554443
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.76 E-value=3.3e-14 Score=160.05 Aligned_cols=435 Identities=10% Similarity=0.032 Sum_probs=283.0
Q ss_pred HhhcCCChHHHHHHHccCCCCCcc---hHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHH---HHHhcccCCh
Q 004369 118 VYGKCGNMEEAQKVFDNLPRINVV---SWTSLISGYVQNSQPELAIHVFLDMLEAGNYPTNVTLGTA---LTACSSLESI 191 (758)
Q Consensus 118 ~~~~~g~~~~A~~~f~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l---l~~~~~~~~~ 191 (758)
...+.|+++.|+..|++..+.++. ....++..+...|+.++|+..+++.. .|+...+..+ ...+...|++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCH
Confidence 457888888888888887653332 23377777888888888888888876 3333332222 3456667888
Q ss_pred HHHHHHHHHHHHhCCCCChhHHHHHHHHHhhcCChHHHHHHHhccCCCCcchHHHHHHHHhh--CCChhhHHHHHHHHHH
Q 004369 192 RLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGSLNSAIKAFNRIREKNVMSWTTVIGACGE--NGEAVQGLRFFSKMLS 269 (758)
Q Consensus 192 ~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~--~g~~~~A~~l~~~m~~ 269 (758)
+.|.++++.+++.... ++.++..|+..|...++.++|++.++++...+......+..++.. .++..+|++.++++.+
T Consensus 119 d~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 119 DQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 8888888888776533 355566777777777888888888877776433322223333333 4555557777777776
Q ss_pred CCCCCC-hhhHHHHHHHHcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCeeechhH
Q 004369 270 EGIQPN-EFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSHVNLVTWNAM 348 (758)
Q Consensus 270 ~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~l 348 (758)
.. |+ ...+.....++.+.|-...|.++... .|+.++-...... +.+.|.+..+.-..++.
T Consensus 198 ~~--P~n~e~~~~~~~~l~~~~~~~~a~~l~~~------~p~~f~~~~~~~l-----~~~~~a~~vr~a~~~~~------ 258 (822)
T PRK14574 198 LA--PTSEEVLKNHLEILQRNRIVEPALRLAKE------NPNLVSAEHYRQL-----ERDAAAEQVRMAVLPTR------ 258 (822)
T ss_pred hC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHh------CccccCHHHHHHH-----HHHHHHHHHhhcccccc------
Confidence 53 43 33334444555555555444444332 1211111111100 01111111111100000
Q ss_pred HHHHhhhchhhhchhhcCCC---hhHHHHHHHHhHhC-CCCCCH-HHH----HHHHHHHhcccchHHHHHHHHHHHHcCC
Q 004369 349 IAGHAQMMDLAKDDLSAHNG---GTEALSIFSKLNSS-GMKPDL-YTF----SSILTICSRLVALEQGEQIHALTLKTGF 419 (758)
Q Consensus 349 i~~~~~~~~~~~~~l~~~g~---~~~A~~l~~~m~~~-g~~p~~-~t~----~~ll~a~~~~~~~~~a~~i~~~~~~~~~ 419 (758)
...++ .+.|+.-++.+... +-.|.. .-| .-.+-++...++..++...++.+...+.
T Consensus 259 ---------------~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~ 323 (822)
T PRK14574 259 ---------------SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGY 323 (822)
T ss_pred ---------------cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCC
Confidence 00122 34566666665542 222322 222 2345577888999999999999998887
Q ss_pred CChHHHHhHHhhhHHhcCCHHHHHHHHHhcCCC---------ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----
Q 004369 420 LSDVVVGTALVNMYKKCGRIERASRVFVEMSTR---------TLISWTSMITGFANHSLSHQALQLFEDMLLAGV----- 485 (758)
Q Consensus 420 ~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----- 485 (758)
+.-..+-.++.++|...+++++|+.+|+.+... +......|.-+|...+++++|..+++++.+...
T Consensus 324 ~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~ 403 (822)
T PRK14574 324 KMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGV 403 (822)
T ss_pred CCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEec
Confidence 666678889999999999999999999987532 233356788899999999999999999987311
Q ss_pred --------CCCHH-HHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC
Q 004369 486 --------RPNQV-TFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP 555 (758)
Q Consensus 486 --------~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p 555 (758)
.||-. .+..+...+...|++.+|++.++.+.. .-+-|......+.+.+...|++.+|++.++.. ...|
T Consensus 404 ~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P 481 (822)
T PRK14574 404 YGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAP 481 (822)
T ss_pred cCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCC
Confidence 12322 334455667889999999999999975 34556788889999999999999999999776 6677
Q ss_pred -CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchh
Q 004369 556 -NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCES 593 (758)
Q Consensus 556 -~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 593 (758)
+..+....+.+....+++++|..+.+.+++..|+++.+
T Consensus 482 ~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 482 RSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhH
Confidence 45566777888888899999999999999999998744
No 26
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.74 E-value=6.8e-15 Score=165.47 Aligned_cols=326 Identities=10% Similarity=-0.012 Sum_probs=263.9
Q ss_pred hhhHHHHHHHHcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCC---CCeeechhHHHHH
Q 004369 276 EFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSH---VNLVTWNAMIAGH 352 (758)
Q Consensus 276 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~ 352 (758)
......++..+.+.|+.+.|..++...+...... ......++......|++++|...|+++.. .+...|..+...+
T Consensus 42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l 120 (656)
T PRK15174 42 EQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVL 120 (656)
T ss_pred ccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 3445667778888999999999999998876444 44455555667789999999999999865 3445677777788
Q ss_pred hhhchhhhchhhcCCChhHHHHHHHHhHhCCCCC-CHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhh
Q 004369 353 AQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKP-DLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVN 431 (758)
Q Consensus 353 ~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~ 431 (758)
.+ .|++++|+..|++.... .| +...+..+...+...|+.++|...+..+...... +...+..+.
T Consensus 121 ~~-----------~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~~- 185 (656)
T PRK15174 121 LK-----------SKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATCL- 185 (656)
T ss_pred HH-----------cCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHHH-
Confidence 88 99999999999999875 45 4567777888999999999999999888765433 333333333
Q ss_pred hHHhcCCHHHHHHHHHhcCCC----ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccccHH
Q 004369 432 MYKKCGRIERASRVFVEMSTR----TLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPN-QVTFVGALAACSNAGMVY 506 (758)
Q Consensus 432 ~y~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~ 506 (758)
.+.+.|++++|...++.+.+. +...+..+...+...|++++|+..|+++.+. .|+ ...+..+...+...|+++
T Consensus 186 ~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~~~~Lg~~l~~~G~~~ 263 (656)
T PRK15174 186 SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--GLDGAALRRSLGLAYYQSGRSR 263 (656)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCch
Confidence 478899999999999987643 2334555677889999999999999999985 454 667777888899999998
Q ss_pred H----HHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHH
Q 004369 507 E----ALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAA 580 (758)
Q Consensus 507 ~----a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~ 580 (758)
+ |...|+.+.+. .+.+...+..+...+.+.|++++|+..+++. ...| +...+..+..++...|++++|...+
T Consensus 264 eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l 341 (656)
T PRK15174 264 EAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEF 341 (656)
T ss_pred hhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 6 89999998762 2334778999999999999999999999998 6667 4667888999999999999999999
Q ss_pred HHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhhCC
Q 004369 581 EQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREEK 621 (758)
Q Consensus 581 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 621 (758)
+++++.+|+++..+..++.+|...|++++|...++...+..
T Consensus 342 ~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 342 VQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 99999999988777778999999999999999999886653
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.73 E-value=8.6e-14 Score=156.76 Aligned_cols=435 Identities=10% Similarity=0.046 Sum_probs=306.3
Q ss_pred HHHhCCCchHHHHHHHHHHHcCCCCChh-hHHHHHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHhhcCChH
Q 004369 149 GYVQNSQPELAIHVFLDMLEAGNYPTNV-TLGTALTACSSLESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGSLN 227 (758)
Q Consensus 149 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~ 227 (758)
...+.|+++.|++.|++..+. .|+.. ....++..+...|+.++|...++..+. .-.........+...|...|+++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~-p~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKA--GPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQS-SMNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhh--CccchhhHHHHHHHHHHcCCcHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHcCCHH
Confidence 346899999999999999875 45542 222777778888999999999888871 11112223333456888889999
Q ss_pred HHHHHHhccCCC---CcchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHHHHHHHHHHH
Q 004369 228 SAIKAFNRIREK---NVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIK 304 (758)
Q Consensus 228 ~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 304 (758)
+|.++|+++.+. |...+..++..+.+.++.++|++.++++... .|+...+..++..+...++...|.+.++.+++
T Consensus 120 ~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 120 QALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 999999998763 3456667778888899999999999998775 45555554444444445556558888888888
Q ss_pred hCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCC
Q 004369 305 LGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSHVNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGM 384 (758)
Q Consensus 305 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~ 384 (758)
.. +.+...+..++....+.|-...|.++..+-++ ..+-..... . ..+.|.+. ++.+.
T Consensus 198 ~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~--~f~~~~~~~--l--------------~~~~~a~~----vr~a~ 254 (822)
T PRK14574 198 LA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPN--LVSAEHYRQ--L--------------ERDAAAEQ----VRMAV 254 (822)
T ss_pred hC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcc--ccCHHHHHH--H--------------HHHHHHHH----Hhhcc
Confidence 75 56777778888888888888888887776543 111111000 0 00112122 11111
Q ss_pred CCCH---HHHHHHHHHHhcccchHHHHHHHHHHHHc-C-CCChHHH-HhHH---hhhHHhcCCHHHHHHHHHhcCCCC--
Q 004369 385 KPDL---YTFSSILTICSRLVALEQGEQIHALTLKT-G-FLSDVVV-GTAL---VNMYKKCGRIERASRVFVEMSTRT-- 453 (758)
Q Consensus 385 ~p~~---~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-~-~~~~~~~-~~~L---i~~y~~~g~~~~A~~~~~~~~~~~-- 453 (758)
.|+. .-|. -.+.+..-++.+... + .++.... ..+. +-++.+.|+..++.+.|+.+....
T Consensus 255 ~~~~~~~~r~~----------~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~ 324 (822)
T PRK14574 255 LPTRSETERFD----------IADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYK 324 (822)
T ss_pred cccccchhhHH----------HHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCC
Confidence 1111 0111 123333344444331 1 1222222 2233 335678899999999999998442
Q ss_pred h--hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcC------
Q 004369 454 L--ISWTSMITGFANHSLSHQALQLFEDMLLAGV-----RPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYK------ 520 (758)
Q Consensus 454 ~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~------ 520 (758)
+ .+--++..+|...+++++|+.+|+++..... .++......|..++..++++++|..+++.+.+...
T Consensus 325 ~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~ 404 (822)
T PRK14574 325 MPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVY 404 (822)
T ss_pred CCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEecc
Confidence 2 3456788999999999999999999976431 22333457888999999999999999999986211
Q ss_pred ----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCc
Q 004369 521 ----IKPV---MDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDC 591 (758)
Q Consensus 521 ----~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 591 (758)
-.|+ ...+..++..+...|++.+|++.++++ ...| |...+..+...+...|+..+|+..++.+..++|++.
T Consensus 405 ~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~ 484 (822)
T PRK14574 405 GLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSL 484 (822)
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccH
Confidence 0122 244556788899999999999999999 5566 888999999999999999999999999999999999
Q ss_pred hhHHHHHHHhhhCCCchhHHHHHHHhhhCC
Q 004369 592 ESYAMLLDIFVSAGRWEDVAVVKNLTREEK 621 (758)
Q Consensus 592 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 621 (758)
.+...++..+...|+|++|.++.+...+..
T Consensus 485 ~~~~~~~~~al~l~e~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 485 ILERAQAETAMALQEWHQMELLTDDVISRS 514 (822)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhhC
Confidence 999999999999999999999988876643
No 28
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.69 E-value=3.3e-13 Score=131.88 Aligned_cols=318 Identities=17% Similarity=0.162 Sum_probs=195.5
Q ss_pred CCchhHHHHHHHHHHHcCCCCCcchHHHHHHH--hhcCCCcHHHH-HHHHHHHHhCCCCchhHHHHHHHHhhcCCChHHH
Q 004369 52 EPVRSLGFQEALSVLTEGPKVQTSSYVSLLQE--CVNRKSLSNAE-IIHAHIVKTGSHQDFFVMTFLVNVYGKCGNMEEA 128 (758)
Q Consensus 52 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~--~~~~~~~~~a~-~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 128 (758)
++...++.-++.+|...|.+.+...-..|+.. |-+..++..+. +-|-.|...| .....+| |.|.+.+
T Consensus 128 ~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--------K~G~vAd- 197 (625)
T KOG4422|consen 128 SREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--------KSGAVAD- 197 (625)
T ss_pred hcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc--------ccccHHH-
Confidence 44555566666666666655554443333332 22233332221 1222222222 1111221 3344433
Q ss_pred HHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCC
Q 004369 129 QKVFDNLPRINVVSWTSLISGYVQNSQPELAIHVFLDMLEAGNYPTNVTLGTALTACSSLESIRLGKQIHAYVVKYQTED 208 (758)
Q Consensus 129 ~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 208 (758)
-+|+..|+ ...++..||.|+|+--..+.|.++|++-.....+.+..+||.+|.+.+-. .++.+..+|+...+.|
T Consensus 198 -L~~E~~PK-T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~P 271 (625)
T KOG4422|consen 198 -LLFETLPK-TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTP 271 (625)
T ss_pred -HHHhhcCC-CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCC
Confidence 45555554 45578999999999999999999999988888888999999998875433 3478888888888889
Q ss_pred ChhHHHHHHHHHhhcCChHHHHHHH----hccC----CCCcchHHHHHHHHhhCCChhh-HHHHHHHHHH----CCCCC-
Q 004369 209 DTSVGNSLCSLYSTCGSLNSAIKAF----NRIR----EKNVMSWTTVIGACGENGEAVQ-GLRFFSKMLS----EGIQP- 274 (758)
Q Consensus 209 ~~~~~~~Li~~y~~~g~~~~A~~~f----~~~~----~~~~~~~~~li~~~~~~g~~~~-A~~l~~~m~~----~g~~p- 274 (758)
|..++|+++....+.|+++.|++.+ .+|+ +|...+|..+|..+.+.+++.+ |..++.+... ...+|
T Consensus 272 nl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~ 351 (625)
T KOG4422|consen 272 NLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPI 351 (625)
T ss_pred chHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCC
Confidence 9999999998888888887765443 3333 2566666666666666655533 3333333322 11222
Q ss_pred ---ChhhHHHHHHHHcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCeeechhHHHH
Q 004369 275 ---NEFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSHVNLVTWNAMIAG 351 (758)
Q Consensus 275 ---~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~ 351 (758)
|...|.+.+..|.+..+.+.|.++++...... | |...|.. + ....-|..+...
T Consensus 352 ~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~---N----------~~~ig~~------~-----~~~fYyr~~~~l 407 (625)
T KOG4422|consen 352 TPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGD---N----------WKFIGPD------Q-----HRNFYYRKFFDL 407 (625)
T ss_pred CCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC---c----------hhhcChH------H-----HHHHHHHHHHHH
Confidence 33445566666666666666666665443211 0 0000000 0 001123334444
Q ss_pred HhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCC
Q 004369 352 HAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFL 420 (758)
Q Consensus 352 ~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~ 420 (758)
.++ ....+.-+..|..|.-.-+-|+..+...+++|....+.++-..+++..++..|..
T Consensus 408 icq-----------~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght 465 (625)
T KOG4422|consen 408 ICQ-----------MESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHT 465 (625)
T ss_pred HHH-----------HHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhh
Confidence 555 7777888999999998888899999999999999999999999999988887743
No 29
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.68 E-value=1.1e-13 Score=135.77 Aligned_cols=481 Identities=14% Similarity=0.106 Sum_probs=299.3
Q ss_pred HHHHhhcCCCcHHHHHHHHHHHHhCCCCchhH-HHHHHHHhhcCCChHHHHHHHc----cCCCCCc----chHHHHHHHH
Q 004369 80 LLQECVNRKSLSNAEIIHAHIVKTGSHQDFFV-MTFLVNVYGKCGNMEEAQKVFD----NLPRINV----VSWTSLISGY 150 (758)
Q Consensus 80 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~~f~----~~~~~~~----~~~~~li~~~ 150 (758)
|.+.|.......+|...++.+++....|+.-. --.+-+.|.+...+.+|++.++ ++|.-+. ...|.+.-.+
T Consensus 207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf 286 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF 286 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence 34445556667778888888887776665432 2234556777788888887664 3443222 2344444467
Q ss_pred HhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHhhcCChHHHH
Q 004369 151 VQNSQPELAIHVFLDMLEAGNYPTNVTLGTALTACSSLESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGSLNSAI 230 (758)
Q Consensus 151 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~ 230 (758)
.+.|+++.|+..|+...+. .||..+-..++-.+...|+.+..++.|..++..-..+|..-| .+..
T Consensus 287 iq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddky-------i~~~------ 351 (840)
T KOG2003|consen 287 IQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKY-------IKEK------ 351 (840)
T ss_pred EecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccc-------cCCc------
Confidence 7888888888888877664 577666556666666677878888777777765444433211 1100
Q ss_pred HHHhccCCCCcchHHHHH-----HHHhhC--CChhhHHHHHHHHHHCCCCCChhh-HHHHHHHHcccCChHHHHHHHHHH
Q 004369 231 KAFNRIREKNVMSWTTVI-----GACGEN--GEAVQGLRFFSKMLSEGIQPNEFT-LTSISSVCGTMLSLRVGAQVHSLG 302 (758)
Q Consensus 231 ~~f~~~~~~~~~~~~~li-----~~~~~~--g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~ 302 (758)
..|+....|.-| ...-+. .+.++++-.-.++..--+.||-.. +...+...-.....+.|.
T Consensus 352 ------ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~------ 419 (840)
T KOG2003|consen 352 ------DDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAI------ 419 (840)
T ss_pred ------CCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhh------
Confidence 012222222222 111111 112233333333333223333211 111111111111111111
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhC
Q 004369 303 IKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSHVNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSS 382 (758)
Q Consensus 303 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~ 382 (758)
+.. -.-..-|.+.|+++.|.++++-....|..+-++-..-++...-. ..-.++..|...-+.....
T Consensus 420 -------dle--i~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~fl-----qggk~~~~aqqyad~aln~ 485 (840)
T KOG2003|consen 420 -------DLE--INKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFL-----QGGKDFADAQQYADIALNI 485 (840)
T ss_pred -------hhh--hhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHH-----hcccchhHHHHHHHHHhcc
Confidence 111 11123477889999999998888776654433332222111000 0022344444444433321
Q ss_pred CCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcC---CCChhHHHH
Q 004369 383 GMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMS---TRTLISWTS 459 (758)
Q Consensus 383 g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~ 459 (758)
. +-+....+.--......|+++.|.+.+.+.....-.-....|| +.-.+-+.|++++|++.|-++. ..++...-.
T Consensus 486 d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~q 563 (840)
T KOG2003|consen 486 D-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQ 563 (840)
T ss_pred c-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 1 1122222111222334688999999999888765333333444 3445778999999999998765 456667777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcC
Q 004369 460 MITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLG 539 (758)
Q Consensus 460 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 539 (758)
+.+.|....+..+|++++.+.... ++.|...+.-|...|-+.|+-.+|.+++-.--+ -++.+.++..-|..-|....
T Consensus 564 ianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtq 640 (840)
T KOG2003|consen 564 IANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQ 640 (840)
T ss_pred HHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhH
Confidence 888899999999999999877653 444577888888899999999999998766533 34556888888888899999
Q ss_pred CHHHHHHHHHHc-CCCCCHHHHHHHHHHHH-HcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCC
Q 004369 540 CIEEAFDFIKKM-DFEPNEVIWSVFIAGCR-RHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGR 606 (758)
Q Consensus 540 ~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~-~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 606 (758)
-+++|+.+|++. -++|+..-|..++..|. +.|+++.|...++...+.-|.|......|+.++...|.
T Consensus 641 f~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 641 FSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 999999999998 68899999999988874 58999999999999999999999999999999988885
No 30
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.64 E-value=5.1e-12 Score=123.73 Aligned_cols=418 Identities=12% Similarity=0.109 Sum_probs=276.8
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhc--ccCChHHH-HHHHHHHHHhCCCCChhHHHH
Q 004369 139 NVVSWTSLISGYVQNSQPELAIHVFLDMLEAGNYPTNVTLGTALTACS--SLESIRLG-KQIHAYVVKYQTEDDTSVGNS 215 (758)
Q Consensus 139 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~~~a-~~~~~~~~~~g~~~~~~~~~~ 215 (758)
.+++=|.|+.. ...|....+.-+|+.|...|+..+...-..+++..+ ...+.-.+ .+.|-.|.+.|-. +..+|
T Consensus 115 ~V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW-- 190 (625)
T KOG4422|consen 115 QVETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW-- 190 (625)
T ss_pred hhcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc--
Confidence 34566666654 457889999999999999988777666555555322 22222211 2233333333322 12222
Q ss_pred HHHHHhhcCChHHHHHHHhccCCCCcchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHH
Q 004369 216 LCSLYSTCGSLNSAIKAFNRIREKNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVG 295 (758)
Q Consensus 216 Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 295 (758)
|.|++.+ ++-+...+...+|..||.|+++--..+.|.++|++-.....+.+..+|+.++.+.+ +..+
T Consensus 191 ------K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~ 257 (625)
T KOG4422|consen 191 ------KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVG 257 (625)
T ss_pred ------ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhcc
Confidence 3455444 44444445678999999999999999999999999998888999999999988764 3445
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHH----ccCC----CCCeeechhHHHHHhhhchhhhchhhcCC
Q 004369 296 AQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLF----DGMS----HVNLVTWNAMIAGHAQMMDLAKDDLSAHN 367 (758)
Q Consensus 296 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~----~~~~~~~~~li~~~~~~~~~~~~~l~~~g 367 (758)
+++..+|+...+.||..++|+++....+.|+++.|++.+ .+|+ +|...+|..+|..+.+ .+
T Consensus 258 K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~r-----------e~ 326 (625)
T KOG4422|consen 258 KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKR-----------ES 326 (625)
T ss_pred HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcc-----------cC
Confidence 889999999999999999999999999999988766554 4444 3888899999998888 66
Q ss_pred ChhH-HHHHHHHhHhC--C--C---CC-CHHHHHHHHHHHhcccchHHHHHHHHHHHHcC----CCCh---HHHHhHHhh
Q 004369 368 GGTE-ALSIFSKLNSS--G--M---KP-DLYTFSSILTICSRLVALEQGEQIHALTLKTG----FLSD---VVVGTALVN 431 (758)
Q Consensus 368 ~~~~-A~~l~~~m~~~--g--~---~p-~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~----~~~~---~~~~~~Li~ 431 (758)
+..+ |..+..+++.. | + .| |...|.+.+..|.+..+.+.|.++++...... +.++ ..-|..+.+
T Consensus 327 dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~ 406 (625)
T KOG4422|consen 327 DPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFD 406 (625)
T ss_pred CchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHH
Confidence 5543 55566665442 2 2 33 56788999999999999999999998775421 2333 234567788
Q ss_pred hHHhcCCHHHHHHHHHhcCC----CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccc----
Q 004369 432 MYKKCGRIERASRVFVEMST----RTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAG---- 503 (758)
Q Consensus 432 ~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g---- 503 (758)
..+....++.-...++.|.. ++..+-..++.+....|+++-.-.++..|...|-.-+...-.-++.-+++..
T Consensus 407 licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~ 486 (625)
T KOG4422|consen 407 LICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPL 486 (625)
T ss_pred HHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCC
Confidence 88888999999999998874 3555556677777788888887788877777664433333333333222221
Q ss_pred ----------------cHHHHHH-HHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-------CCCCCHHH
Q 004369 504 ----------------MVYEALG-YFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-------DFEPNEVI 559 (758)
Q Consensus 504 ----------------~~~~a~~-~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~ 559 (758)
++.++.+ .-.++. ...-.....+++.-.+.|.|+.++|.+++.-. +..|....
T Consensus 487 tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r---~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnA 563 (625)
T KOG4422|consen 487 TPEREQLQVAFAKCAADIKEAYESQPIRQR---AQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNA 563 (625)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhHHHHH---hccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhh
Confidence 0111111 111121 22233455677777788888888888877654 23333333
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhccC
Q 004369 560 WSVFIAGCRRHGNMELGFYAAEQLLKLK 587 (758)
Q Consensus 560 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 587 (758)
.--|+.+-.+.++.-.|..+++-+.+.+
T Consensus 564 m~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 564 MAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 3455556666666666776666665444
No 31
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.64 E-value=4e-11 Score=128.61 Aligned_cols=340 Identities=11% Similarity=0.097 Sum_probs=185.3
Q ss_pred CCcHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChHHHHHHHccC---CCCCcchHHHHHHHHHhCCCchHHHHHHH
Q 004369 88 KSLSNAEIIHAHIVKTGSHQDFFVMTFLVNVYGKCGNMEEAQKVFDNL---PRINVVSWTSLISGYVQNSQPELAIHVFL 164 (758)
Q Consensus 88 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 164 (758)
|+++.|..++..+++.. +.....|-.|...|-..|+.+++...+-.. ...|..-|-.+-....+.|++++|.-.|.
T Consensus 153 g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYS 231 (895)
T ss_pred CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 66666666666666554 444555566666666666666665544222 22344455555555556666666666666
Q ss_pred HHHHcCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHH----HHHHHhhcCChHHHHHHHhccCC--
Q 004369 165 DMLEAGNYPTNVTLGTALTACSSLESIRLGKQIHAYVVKYQTEDDTSVGNS----LCSLYSTCGSLNSAIKAFNRIRE-- 238 (758)
Q Consensus 165 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~----Li~~y~~~g~~~~A~~~f~~~~~-- 238 (758)
+.++.. +++...+---...|-+.|+...|..-+.++.....+.|..-... .+..|...++-+.|.+.++....
T Consensus 232 rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~ 310 (895)
T KOG2076|consen 232 RAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKE 310 (895)
T ss_pred HHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhc
Confidence 665542 11222222223345555666666666666555443222222222 23445555555666666665543
Q ss_pred C---CcchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCCh----------------------hhH----HHHHHHHccc
Q 004369 239 K---NVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNE----------------------FTL----TSISSVCGTM 289 (758)
Q Consensus 239 ~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----------------------~t~----~~ll~~~~~~ 289 (758)
. +...+|.++..|.+...++.|......+......+|. ..| .-+.-++...
T Consensus 311 ~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L 390 (895)
T KOG2076|consen 311 KDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHL 390 (895)
T ss_pred cccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcc
Confidence 1 3345677777777777777777777766552111111 111 1222333444
Q ss_pred CChHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcCCHHHHHHHHccCCC----CCeeechhHHHHHhhhchhhhchh
Q 004369 290 LSLRVGAQVHSLGIKLG--YASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSH----VNLVTWNAMIAGHAQMMDLAKDDL 363 (758)
Q Consensus 290 ~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~~~~~~~~l 363 (758)
...+....+.....+.. +..+...|.-+.++|...|++.+|.++|..+.. .+...|--+..+|..
T Consensus 391 ~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~--------- 461 (895)
T KOG2076|consen 391 KERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYME--------- 461 (895)
T ss_pred cccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHH---------
Confidence 55555555555555555 334556667777777777777777777777654 344566666666666
Q ss_pred hcCCChhHHHHHHHHhHhCCCCCCH-HHHHHHHHHHhcccchHHHHHHHHHHH--------HcCCCChHHHHhHHhhhHH
Q 004369 364 SAHNGGTEALSIFSKLNSSGMKPDL-YTFSSILTICSRLVALEQGEQIHALTL--------KTGFLSDVVVGTALVNMYK 434 (758)
Q Consensus 364 ~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~i~~~~~--------~~~~~~~~~~~~~Li~~y~ 434 (758)
.|.+++|++.|...... .|+. ..-.++-..+.+.|+.++|.+.+..+. ..+..|+..+.....+.|.
T Consensus 462 --l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~ 537 (895)
T KOG2076|consen 462 --LGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILF 537 (895)
T ss_pred --HhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHH
Confidence 77777777777776653 3322 222334444556666666666665532 2234455555555556666
Q ss_pred hcCCHHHH
Q 004369 435 KCGRIERA 442 (758)
Q Consensus 435 ~~g~~~~A 442 (758)
+.|+.++=
T Consensus 538 ~~gk~E~f 545 (895)
T KOG2076|consen 538 QVGKREEF 545 (895)
T ss_pred HhhhHHHH
Confidence 66666553
No 32
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.63 E-value=1.9e-10 Score=118.70 Aligned_cols=490 Identities=13% Similarity=0.084 Sum_probs=311.8
Q ss_pred cCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChHHHHHHHccCCC---CCcchHHHHHHHHHhCCCchHHHHH
Q 004369 86 NRKSLSNAEIIHAHIVKTGSHQDFFVMTFLVNVYGKCGNMEEAQKVFDNLPR---INVVSWTSLISGYVQNSQPELAIHV 162 (758)
Q Consensus 86 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 162 (758)
.....+.|+-++.+.++.- +.+...|. +|++...++.|.+++++..+ .+...|.+-...=-.+|+.+....+
T Consensus 388 elE~~~darilL~rAvecc-p~s~dLwl----AlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~ki 462 (913)
T KOG0495|consen 388 ELEEPEDARILLERAVECC-PQSMDLWL----ALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKI 462 (913)
T ss_pred hccChHHHHHHHHHHHHhc-cchHHHHH----HHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHH
Confidence 3444555666666666542 33333333 34455556667776655543 3455565555555566776666666
Q ss_pred HHH----HHHcCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCC--hhHHHHHHHHHhhcCChHHHHHHHhcc
Q 004369 163 FLD----MLEAGNYPTNVTLGTALTACSSLESIRLGKQIHAYVVKYQTEDD--TSVGNSLCSLYSTCGSLNSAIKAFNRI 236 (758)
Q Consensus 163 ~~~----m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~Li~~y~~~g~~~~A~~~f~~~ 236 (758)
..+ +...|+..+...|..=..+|-..|..-.+..+...++..|++.. ..+|+.-...+.+.+.++-|+.+|...
T Consensus 463 i~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~a 542 (913)
T KOG0495|consen 463 IDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHA 542 (913)
T ss_pred HHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHH
Confidence 544 33456666777776666677777777777777666666665432 335555566666666666666666655
Q ss_pred CC---CCcchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHHHHHHHHHHHhCCCCchhH
Q 004369 237 RE---KNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRV 313 (758)
Q Consensus 237 ~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 313 (758)
.+ .+...|...+..--..|..++-..+|++.... - +.....
T Consensus 543 lqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-----------------------------------~-pkae~l 586 (913)
T KOG0495|consen 543 LQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-----------------------------------C-PKAEIL 586 (913)
T ss_pred HhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-----------------------------------C-CcchhH
Confidence 44 23445555544444455566666666555543 1 222333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHccCCC---CCeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCHHH
Q 004369 314 RNSIMYLYLKCGLVDEAQKLFDGMSH---VNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYT 390 (758)
Q Consensus 314 ~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t 390 (758)
|-....-+...|++..|+.++.+.-+ .+...|-+-+..-.. +..+++|..+|.+.... .|+...
T Consensus 587 wlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~e-----------n~e~eraR~llakar~~--sgTeRv 653 (913)
T KOG0495|consen 587 WLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFE-----------NDELERARDLLAKARSI--SGTERV 653 (913)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhc-----------cccHHHHHHHHHHHhcc--CCcchh
Confidence 34444445555666666666555433 123345555555445 66677777777666553 445555
Q ss_pred HHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhc
Q 004369 391 FSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMST---RTLISWTSMITGFANH 467 (758)
Q Consensus 391 ~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 467 (758)
|.--+..---++..++|.++++..++. ++.-...|-.+...|-+.++++.|.+.|..-.+ ..+..|-.|...--+.
T Consensus 654 ~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~ 732 (913)
T KOG0495|consen 654 WMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKD 732 (913)
T ss_pred hHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHh
Confidence 544444445556677777777666664 344456777777788888888888887776542 2445677777777777
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004369 468 SLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDF 547 (758)
Q Consensus 468 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 547 (758)
|+.-+|..++++.+..+ +-|...|...+..=.+.|+.++|..+..++.+ ..+.+...|.--|.+..+.++-..+.+.
T Consensus 733 ~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DA 809 (913)
T KOG0495|consen 733 GQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDA 809 (913)
T ss_pred cchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHH
Confidence 88888888888877653 33566777888888888888888888777766 4555667777778888888877777777
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhhCCCCCCCc
Q 004369 548 IKKMDFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREEKLSETDD 627 (758)
Q Consensus 548 ~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 627 (758)
+++.. -|..+.-.+...+....+++.|..-|++++..+|++..++..+...+...|.-++-.++++...... +.-|
T Consensus 810 Lkkce--~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~E--P~hG 885 (913)
T KOG0495|consen 810 LKKCE--HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAE--PTHG 885 (913)
T ss_pred HHhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCCC
Confidence 77653 3555566677777777888888888999999888888888888888888888888888888776532 3346
Q ss_pred eeEEEECCEE
Q 004369 628 WSWIRIKDKV 637 (758)
Q Consensus 628 ~s~~~~~~~~ 637 (758)
..|..+...+
T Consensus 886 ~~W~avSK~i 895 (913)
T KOG0495|consen 886 ELWQAVSKDI 895 (913)
T ss_pred cHHHHHhhhH
Confidence 6776664444
No 33
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.62 E-value=1.7e-10 Score=119.10 Aligned_cols=437 Identities=14% Similarity=0.102 Sum_probs=336.2
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHhhcCChHHHHHHHhccCC
Q 004369 159 AIHVFLDMLEAGNYPTNVTLGTALTACSSLESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGSLNSAIKAFNRIRE 238 (758)
Q Consensus 159 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~ 238 (758)
=.+++++.++. -|+.+. |=++.......+.|+-++..+++.- +.+...| -+|.+..-++.|.+++++..+
T Consensus 365 K~RVlRKALe~--iP~sv~---LWKaAVelE~~~darilL~rAvecc-p~s~dLw----lAlarLetYenAkkvLNkaRe 434 (913)
T KOG0495|consen 365 KKRVLRKALEH--IPRSVR---LWKAAVELEEPEDARILLERAVECC-PQSMDLW----LALARLETYENAKKVLNKARE 434 (913)
T ss_pred HHHHHHHHHHh--CCchHH---HHHHHHhccChHHHHHHHHHHHHhc-cchHHHH----HHHHHHHHHHHHHHHHHHHHh
Confidence 34555555553 344332 2334445566666888888888753 2333334 455666788999999988766
Q ss_pred ---CCcchHHHHHHHHhhCCChhhHHHHHHH----HHHCCCCCChhhHHHHHHHHcccCChHHHHHHHHHHHHhCCCCc-
Q 004369 239 ---KNVMSWTTVIGACGENGEAVQGLRFFSK----MLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYASN- 310 (758)
Q Consensus 239 ---~~~~~~~~li~~~~~~g~~~~A~~l~~~----m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~- 310 (758)
.+...|.+-...--.+|+.+....+..+ +...|+..+...|..=..+|-..|..-....+...++..|++..
T Consensus 435 ~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed 514 (913)
T KOG0495|consen 435 IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEED 514 (913)
T ss_pred hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccch
Confidence 4777888777666778998888888765 45679999999998888899999999999999999998887553
Q ss_pred -hhHHHHHHHHHHhcCCHHHHHHHHccCCC---CCeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCC
Q 004369 311 -LRVRNSIMYLYLKCGLVDEAQKLFDGMSH---VNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKP 386 (758)
Q Consensus 311 -~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p 386 (758)
..+|+.-.+.|.+.+.++-|+.+|....+ .+...|......--. .|..++...+|++.... ++-
T Consensus 515 ~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~-----------hgt~Esl~Allqkav~~-~pk 582 (913)
T KOG0495|consen 515 RKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKS-----------HGTRESLEALLQKAVEQ-CPK 582 (913)
T ss_pred hHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHh-----------cCcHHHHHHHHHHHHHh-CCc
Confidence 46888888999999999999999988765 344556555544334 88889999999999876 233
Q ss_pred CHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcC--CCChhHHHHHHHHH
Q 004369 387 DLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMS--TRTLISWTSMITGF 464 (758)
Q Consensus 387 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~ 464 (758)
....+.......-..|++..|+.++..+.+.. +-+..++-+-+.......+++.|..+|.+.. .+....|.--+...
T Consensus 583 ae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~e 661 (913)
T KOG0495|consen 583 AEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLE 661 (913)
T ss_pred chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHH
Confidence 34445555556677799999999999998875 3477888888999999999999999999876 44556777766666
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHH
Q 004369 465 ANHSLSHQALQLFEDMLLAGVRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEE 543 (758)
Q Consensus 465 ~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 543 (758)
--.++.++|++++++.++ .-|+ ...|..+...+.+.++++.|.+.|..=.+ .++-..-.|-.|.+.=-+.|.+-+
T Consensus 662 r~ld~~eeA~rllEe~lk--~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~r 737 (913)
T KOG0495|consen 662 RYLDNVEEALRLLEEALK--SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVR 737 (913)
T ss_pred HHhhhHHHHHHHHHHHHH--hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhh
Confidence 778899999999999888 4677 45677777788899999999998876654 333446678888888889999999
Q ss_pred HHHHHHHcC-CCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCC------------------------------Cc
Q 004369 544 AFDFIKKMD-FEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPK------------------------------DC 591 (758)
Q Consensus 544 A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------------------------------~~ 591 (758)
|..++++.. -.| |...|...+..-.++|+.+.|..++.++++--|. |+
T Consensus 738 AR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dp 817 (913)
T KOG0495|consen 738 ARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDP 817 (913)
T ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCc
Confidence 999999982 235 7888999999999999999999998888875444 45
Q ss_pred hhHHHHHHHhhhCCCchhHHHHHHHhhhCCC
Q 004369 592 ESYAMLLDIFVSAGRWEDVAVVKNLTREEKL 622 (758)
Q Consensus 592 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 622 (758)
.+...++.++....+++.|++.|....+.+.
T Consensus 818 hVllaia~lfw~e~k~~kar~Wf~Ravk~d~ 848 (913)
T KOG0495|consen 818 HVLLAIAKLFWSEKKIEKAREWFERAVKKDP 848 (913)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 5677788889999999999999998876544
No 34
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.58 E-value=1.4e-10 Score=124.57 Aligned_cols=540 Identities=11% Similarity=0.073 Sum_probs=358.1
Q ss_pred CCCchhHHHHHHHHHHHcCCCCCcchHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChHHHHH
Q 004369 51 SEPVRSLGFQEALSVLTEGPKVQTSSYVSLLQECVNRKSLSNAEIIHAHIVKTGSHQDFFVMTFLVNVYGKCGNMEEAQK 130 (758)
Q Consensus 51 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 130 (758)
.+|+.++|..++.+..+..+. +...|..|-..+-..|+.+++...+-.+.-. .+.|...|-.+-....+.|.++.|+-
T Consensus 151 arg~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL-~p~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAHL-NPKDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred HhCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHhcccHHHHHH
Confidence 579999999999999988766 5578999999999999999887765444333 36677899999999999999999999
Q ss_pred HHccCCCCCcchHHHH---HHHHHhCCCchHHHHHHHHHHHcCCCCChhhHH----HHHHHhcccCChHHHHHHHHHHHH
Q 004369 131 VFDNLPRINVVSWTSL---ISGYVQNSQPELAIHVFLDMLEAGNYPTNVTLG----TALTACSSLESIRLGKQIHAYVVK 203 (758)
Q Consensus 131 ~f~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~----~ll~~~~~~~~~~~a~~~~~~~~~ 203 (758)
.|.+..+.++.-|-.+ ...|-+.|+...|.+.|.++.+.....|..-+. .+++.+...++-+.|.+.++....
T Consensus 229 cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 229 CYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 9999887555555544 356788999999999999998864322222222 234455566666888888777766
Q ss_pred hC-CCCChhHHHHHHHHHhhcCChHHHHHHHhccCC--------------------------CCcchHHH----HHHHHh
Q 004369 204 YQ-TEDDTSVGNSLCSLYSTCGSLNSAIKAFNRIRE--------------------------KNVMSWTT----VIGACG 252 (758)
Q Consensus 204 ~g-~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--------------------------~~~~~~~~----li~~~~ 252 (758)
.+ -..+...++.++.+|.+...++.|......+.. ++..+|+. +.-++.
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~ 388 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLV 388 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhh
Confidence 33 345567788899999999988888877655432 12222221 112333
Q ss_pred hCCChhhHHHHHHHHHHCC--CCCChhhHHHHHHHHcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 004369 253 ENGEAVQGLRFFSKMLSEG--IQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEA 330 (758)
Q Consensus 253 ~~g~~~~A~~l~~~m~~~g--~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 330 (758)
.....+...-+........ +.-+..-|.-+..++...|.+..|..++..+.......+..+|-.+..+|...|..+.|
T Consensus 389 ~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A 468 (895)
T KOG2076|consen 389 HLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEA 468 (895)
T ss_pred cccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHH
Confidence 3333344444444444544 33455678889999999999999999999999887677788999999999999999999
Q ss_pred HHHHccCCCCCeeec---hhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHh--------CCCCCCHHHHHHHHHHHh
Q 004369 331 QKLFDGMSHVNLVTW---NAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNS--------SGMKPDLYTFSSILTICS 399 (758)
Q Consensus 331 ~~~~~~m~~~~~~~~---~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~--------~g~~p~~~t~~~ll~a~~ 399 (758)
...|+.+..-++... -+|-..+-+ .|+.++|++.+..|.. .+..|+..........+.
T Consensus 469 ~e~y~kvl~~~p~~~D~Ri~Lasl~~~-----------~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~ 537 (895)
T KOG2076|consen 469 IEFYEKVLILAPDNLDARITLASLYQQ-----------LGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILF 537 (895)
T ss_pred HHHHHHHHhcCCCchhhhhhHHHHHHh-----------cCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHH
Confidence 999998876333333 344455666 9999999999998652 234455555555556667
Q ss_pred cccchHHHHHHHHHHHHcC----------------------CCChHHHHhHHhhhHHhcCCHHHHHHHHHhc--------
Q 004369 400 RLVALEQGEQIHALTLKTG----------------------FLSDVVVGTALVNMYKKCGRIERASRVFVEM-------- 449 (758)
Q Consensus 400 ~~~~~~~a~~i~~~~~~~~----------------------~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~-------- 449 (758)
+.|+.++-..+-..++... ..........++.+-.+.++.....+-...-
T Consensus 538 ~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~ 617 (895)
T KOG2076|consen 538 QVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVEL 617 (895)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhh
Confidence 7777766554444333211 1111122222333333333322222111110
Q ss_pred CCCChh----HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCHH--HH-HHHHHHHhccccHHHHHHHHHHhhhhcC
Q 004369 450 STRTLI----SWTSMITGFANHSLSHQALQLFEDMLLAGV--RPNQV--TF-VGALAACSNAGMVYEALGYFEMMQKEYK 520 (758)
Q Consensus 450 ~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~--t~-~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 520 (758)
..-.+. .+.-++..+++.++.++|+.+...+.+..+ .++.. .+ ...+.++...+++..|..++..|...++
T Consensus 618 ~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~ 697 (895)
T KOG2076|consen 618 RGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQ 697 (895)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 011111 234567889999999999999998887542 22221 22 3345577789999999999999987644
Q ss_pred CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCCHHHHHHHHH--HHHHcCChhHHHHHHHHHhccCCCCchhH
Q 004369 521 IKPV---MDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEPNEVIWSVFIA--GCRRHGNMELGFYAAEQLLKLKPKDCESY 594 (758)
Q Consensus 521 ~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~--~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 594 (758)
...+ ...|++..+.+.+.|+-.-=..++... ...|+..-...++. -....+.+.-|...+-++....|++|.+.
T Consensus 698 ~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~n 777 (895)
T KOG2076|consen 698 FYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLIN 777 (895)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHH
Confidence 4433 345676666666666654445555444 33333211122222 23456677889999999999999999988
Q ss_pred HHHHHHhhh
Q 004369 595 AMLLDIFVS 603 (758)
Q Consensus 595 ~~l~~~~~~ 603 (758)
..|+-+|..
T Consensus 778 l~lglafih 786 (895)
T KOG2076|consen 778 LCLGLAFIH 786 (895)
T ss_pred HHHHHHHHH
Confidence 888877753
No 35
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.57 E-value=1.6e-11 Score=130.61 Aligned_cols=533 Identities=14% Similarity=0.055 Sum_probs=315.8
Q ss_pred HHHHHHHHcCCCCCcchHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChHHHHHHHccCCCCC
Q 004369 60 QEALSVLTEGPKVQTSSYVSLLQECVNRKSLSNAEIIHAHIVKTGSHQDFFVMTFLVNVYGKCGNMEEAQKVFDNLPRIN 139 (758)
Q Consensus 60 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~ 139 (758)
+++..+...|+.|+.+||..++..|+..|+.+.|- +|..|.-...+.+..+++.++....+.++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 34566778899999999999999999999999998 9999988888888899999999999999888776 677
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHH-HH-------HcCCCCChhhHHHHHHHhcccC-C------hHHHHHHHHHHHHh
Q 004369 140 VVSWTSLISGYVQNSQPELAIHVFLD-ML-------EAGNYPTNVTLGTALTACSSLE-S------IRLGKQIHAYVVKY 204 (758)
Q Consensus 140 ~~~~~~li~~~~~~g~~~~A~~~~~~-m~-------~~g~~p~~~t~~~ll~~~~~~~-~------~~~a~~~~~~~~~~ 204 (758)
..+|..|..+|.++|+... ++..++ |. ..|+.--..-|-..+.+|...- + ..--+.+++..++.
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkl 161 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKL 161 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999998765 333333 22 1232211222222222222211 1 11123344444444
Q ss_pred CCCCChhHHHHHHHHHhhc-----CChHHHHHHHhccCC-CCcchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhh
Q 004369 205 QTEDDTSVGNSLCSLYSTC-----GSLNSAIKAFNRIRE-KNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFT 278 (758)
Q Consensus 205 g~~~~~~~~~~Li~~y~~~-----g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 278 (758)
+....+..++.=...+.+. ..+++-...-....+ ++..+|.+++..-.-+|+.+.|..++.+|.+.|++.+..-
T Consensus 162 l~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~Hy 241 (1088)
T KOG4318|consen 162 LAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHY 241 (1088)
T ss_pred HhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccccc
Confidence 4211111111111111111 223333333333333 8899999999999999999999999999999999999988
Q ss_pred HHHHHHHHcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCeeechh-HHHHHhhhch
Q 004369 279 LTSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSHVNLVTWNA-MIAGHAQMMD 357 (758)
Q Consensus 279 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-li~~~~~~~~ 357 (758)
|-.++-+ .++...++.+..-|...|+.|+..++..-+-.+.++|....+.+. .+ ....+++ +..+.++ |.
T Consensus 242 FwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~----sq-~~hg~tAavrsaa~r-g~ 312 (1088)
T KOG4318|consen 242 FWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEG----SQ-LAHGFTAAVRSAACR-GL 312 (1088)
T ss_pred chhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccc----cc-hhhhhhHHHHHHHhc-cc
Confidence 8888766 788888999999999999999999998888777776653332221 11 1111111 1122221 00
Q ss_pred hhhchhhcCCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCC---CChHHHHhHHhhhHH
Q 004369 358 LAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGF---LSDVVVGTALVNMYK 434 (758)
Q Consensus 358 ~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~---~~~~~~~~~Li~~y~ 434 (758)
...+.+. .....-....+++..-.|+.-....|..... ....|.-+...++-+.+..--. ..++..+..++
T Consensus 313 ~a~k~l~-~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~l---- 386 (1088)
T KOG4318|consen 313 LANKRLR-QNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALL---- 386 (1088)
T ss_pred HhHHHHH-HHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHH----
Confidence 0000000 1111122222222222344333333322222 2335666666666665543211 11233333333
Q ss_pred hcCCHHHHHHHHHhcCCCChh-HHHHHHHHHHh---cCCHHHHHHHHHH------------HHH----cCCCC-------
Q 004369 435 KCGRIERASRVFVEMSTRTLI-SWTSMITGFAN---HSLSHQALQLFED------------MLL----AGVRP------- 487 (758)
Q Consensus 435 ~~g~~~~A~~~~~~~~~~~~~-~~~~li~~~~~---~g~~~~A~~~~~~------------m~~----~g~~p------- 487 (758)
.+.|.+...+... .++ .-.+... .....+..++... ... +-..|
T Consensus 387 --------rqyFrr~e~~~~~~i~~-~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~ 457 (1088)
T KOG4318|consen 387 --------RQYFRRIERHICSRIYY-AGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHL 457 (1088)
T ss_pred --------HHHHHHHHhhHHHHHHH-HHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhH
Confidence 3344444333221 111 1111111 1111111111111 111 00111
Q ss_pred CHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcC-----CCCCHHHHHH
Q 004369 488 NQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKMD-----FEPNEVIWSV 562 (758)
Q Consensus 488 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~p~~~~~~~ 562 (758)
-...-+.++..|...-+..+++..-+.... +-+ | ..|..||+.+....++++|..+.++.. +.-|..-+..
T Consensus 458 irdi~~ql~l~l~se~n~lK~l~~~ekye~-~lf-~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~ 533 (1088)
T KOG4318|consen 458 IRDIANQLHLTLNSEYNKLKILCDEEKYED-LLF-A--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTS 533 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh-h--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHH
Confidence 112334555566666666666655444433 122 2 679999999999999999999999882 2335556788
Q ss_pred HHHHHHHcCChhHHHHHHHHHhcc---CCCCchhHHHHHHHhhhCCCchhHHHHHHHhhhCCCCCCCceeE
Q 004369 563 FIAGCRRHGNMELGFYAAEQLLKL---KPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREEKLSETDDWSW 630 (758)
Q Consensus 563 ll~~~~~~g~~~~a~~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~ 630 (758)
+.+...+++....+..+.+.+.+. .|.-......+.+.-+..|+.+...+.++.+...|+.. .|--|
T Consensus 534 l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e-tgPl~ 603 (1088)
T KOG4318|consen 534 LQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE-TGPLW 603 (1088)
T ss_pred HHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh-cccce
Confidence 888889999888888888777653 34445666777888889999999999999999988866 34434
No 36
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.52 E-value=5.2e-14 Score=142.62 Aligned_cols=248 Identities=16% Similarity=0.138 Sum_probs=114.7
Q ss_pred CCChhHHHHHHHHhHhCCCCCCHHHHHHHH-HHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHH
Q 004369 366 HNGGTEALSIFSKLNSSGMKPDLYTFSSIL-TICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASR 444 (758)
Q Consensus 366 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~ 444 (758)
.|++++|++++++.......|+...|..++ ..+...++.+.|.+.++.+...+.. +...+..++.. ...+++++|.+
T Consensus 21 ~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~ 98 (280)
T PF13429_consen 21 RGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALK 98 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccccccccc
Confidence 999999999997665543356665555544 4556788999999999999887533 66677788877 68899999999
Q ss_pred HHHhcC--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCC
Q 004369 445 VFVEMS--TRTLISWTSMITGFANHSLSHQALQLFEDMLLAG-VRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKI 521 (758)
Q Consensus 445 ~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 521 (758)
++...- .++...+..++..+...|+++++.++++++.... .+++...|..+...+.+.|+.++|.+.+++..+.
T Consensus 99 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--- 175 (280)
T PF13429_consen 99 LAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL--- 175 (280)
T ss_dssp -------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---
T ss_pred ccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---
Confidence 988764 3466778889999999999999999999987643 3456777888888899999999999999999863
Q ss_pred CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHH
Q 004369 522 KPV-MDHYMCLIDMFVRLGCIEEAFDFIKKM--DFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLL 598 (758)
Q Consensus 522 ~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 598 (758)
.|+ ......++..+...|+.+++.++++.. ....|...|..+..++...|+.++|...++++++.+|+|+.....++
T Consensus 176 ~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a 255 (280)
T PF13429_consen 176 DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYA 255 (280)
T ss_dssp -TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccccccccc
Confidence 454 778889999999999999988888777 22346678899999999999999999999999999999999999999
Q ss_pred HHhhhCCCchhHHHHHHHhh
Q 004369 599 DIFVSAGRWEDVAVVKNLTR 618 (758)
Q Consensus 599 ~~~~~~g~~~~a~~~~~~m~ 618 (758)
+++...|+.++|.+++...-
T Consensus 256 ~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 256 DALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHT----------------
T ss_pred cccccccccccccccccccc
Confidence 99999999999999987764
No 37
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=1.8e-10 Score=115.11 Aligned_cols=213 Identities=11% Similarity=0.100 Sum_probs=171.5
Q ss_pred ccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCCHHHHHHHH
Q 004369 401 LVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMS---TRTLISWTSMITGFANHSLSHQALQLF 477 (758)
Q Consensus 401 ~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~ 477 (758)
.|+.-.+.+-++.+++.... +...|--+..+|....+.++-...|++.. ..|..+|-.-...+.-.+++++|+.=|
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred cCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 46777777888888876533 23336667778999999999999998876 346667777777777788999999999
Q ss_pred HHHHHcCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC
Q 004369 478 EDMLLAGVRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP 555 (758)
Q Consensus 478 ~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p 555 (758)
++.+. +.|+ ...|..+-.+..+.+.++++...|+..+++ ++.-++.|+-....+...+++++|.+.|+.. .++|
T Consensus 418 ~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 418 QKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred HHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 99987 5665 567888888888999999999999999884 4555788999999999999999999999987 5555
Q ss_pred C---------HHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369 556 N---------EVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTRE 619 (758)
Q Consensus 556 ~---------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 619 (758)
+ ..+-..++-.- -.+++..|+.+++++++++|....+|..|+.+-.+.|+.++|.++|+....
T Consensus 494 ~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4 22222333322 338999999999999999999999999999999999999999999998653
No 38
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=2.6e-10 Score=113.29 Aligned_cols=360 Identities=13% Similarity=0.122 Sum_probs=234.0
Q ss_pred CCCCChhHHHHHHHHHhhcCChHHHHHHHhccCCCCcchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhH--HHH
Q 004369 205 QTEDDTSVGNSLCSLYSTCGSLNSAIKAFNRIREKNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTL--TSI 282 (758)
Q Consensus 205 g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~--~~l 282 (758)
+...|.+.+-.....+-+.|....|...|......-+..|.+.+....-..+.+.+..+ .. |...|..-+ -.+
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l----~~-~l~~~~h~M~~~F~ 233 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSIL----VV-GLPSDMHWMKKFFL 233 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHH----Hh-cCcccchHHHHHHH
Confidence 34455555555555666778888888888877765556666554432222222222111 11 111111111 112
Q ss_pred HHHHcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCeeechhHHHHHhhhchhhhch
Q 004369 283 SSVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSHVNLVTWNAMIAGHAQMMDLAKDD 362 (758)
Q Consensus 283 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~~~ 362 (758)
..++......+.+.+=.......|++.+...-+-...+.-.
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~--------------------------------------- 274 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYN--------------------------------------- 274 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhh---------------------------------------
Confidence 33333344444444444444555544444333333333333
Q ss_pred hhcCCChhHHHHHHHHhHhCCC-C-CCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHH
Q 004369 363 LSAHNGGTEALSIFSKLNSSGM-K-PDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIE 440 (758)
Q Consensus 363 l~~~g~~~~A~~l~~~m~~~g~-~-p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~ 440 (758)
+.++++|+.+|+++.+... + -|..+|+.++-.-.....+.--.+....+- .--+.|...+.+-|+-.++.+
T Consensus 275 ---~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~id----KyR~ETCCiIaNYYSlr~eHE 347 (559)
T KOG1155|consen 275 ---QRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNID----KYRPETCCIIANYYSLRSEHE 347 (559)
T ss_pred ---hhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhc----cCCccceeeehhHHHHHHhHH
Confidence 4555666666666655421 1 144566655544332222211111111111 123456677788888899999
Q ss_pred HHHHHHHhcCCC---ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhh
Q 004369 441 RASRVFVEMSTR---TLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQK 517 (758)
Q Consensus 441 ~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 517 (758)
+|...|++..+- -...|+.|..-|....+...|++-+++..+-. +-|...|-.|..+|.-.+...-|+-+|+++.+
T Consensus 348 KAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~ 426 (559)
T KOG1155|consen 348 KAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALE 426 (559)
T ss_pred HHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHh
Confidence 999999987744 44689999999999999999999999999842 44677999999999999999999999999875
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhc-------cCC
Q 004369 518 EYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM--DFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLK-------LKP 588 (758)
Q Consensus 518 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-------~~p 588 (758)
-.+-|...|.+|.+.|.+.++++||++.|++. .-+.+...+..|...+.+.++.++|.+.+++-++ .+|
T Consensus 427 --~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~ 504 (559)
T KOG1155|consen 427 --LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDD 504 (559)
T ss_pred --cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccch
Confidence 33446889999999999999999999999998 2233668899999999999999999999999887 334
Q ss_pred CCchhHHHHHHHhhhCCCchhHHHHHHHhh
Q 004369 589 KDCESYAMLLDIFVSAGRWEDVAVVKNLTR 618 (758)
Q Consensus 589 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 618 (758)
.-..+..-|+.-+.+.++|++|..+-....
T Consensus 505 ~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 505 ETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 334455568888999999999987655543
No 39
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.47 E-value=5e-12 Score=131.34 Aligned_cols=268 Identities=17% Similarity=0.186 Sum_probs=214.2
Q ss_pred CCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcC--CCChHHHHhHHhhhHHhcCCHHHHH
Q 004369 366 HNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTG--FLSDVVVGTALVNMYKKCGRIERAS 443 (758)
Q Consensus 366 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~--~~~~~~~~~~Li~~y~~~g~~~~A~ 443 (758)
.-+..+|+..|.+... .+.-+......+..+|-..+++++++.+|+.+.+.. ...+..+|.+.+.-+-+.=.+..--
T Consensus 332 ~y~~~~A~~~~~klp~-h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~La 410 (638)
T KOG1126|consen 332 QYNCREALNLFEKLPS-HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLA 410 (638)
T ss_pred HHHHHHHHHHHHhhHH-hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHH
Confidence 5566899999999443 344455777888899999999999999999998753 2235677777765544322222222
Q ss_pred HHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCC
Q 004369 444 RVFVEMSTRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRP-NQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIK 522 (758)
Q Consensus 444 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 522 (758)
+-+-.+.+..+.+|-++...|.-+++.+.|++.|++... +.| ...+|+.+..-+.....+|.|...|+....
T Consensus 411 q~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~----- 483 (638)
T KOG1126|consen 411 QDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG----- 483 (638)
T ss_pred HHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc-----
Confidence 222233345678999999999999999999999999987 677 478888888888888999999999987753
Q ss_pred CCHHHHHH---HHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHH
Q 004369 523 PVMDHYMC---LIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAML 597 (758)
Q Consensus 523 p~~~~~~~---li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 597 (758)
.|..+|++ |.-.|.|.++++.|+-.|+++ .+.| +.++...+...+.+.|+.|+|++++++++-++|.|+-.-...
T Consensus 484 ~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 484 VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 45567765 567789999999999999998 8888 677788888999999999999999999999999999999999
Q ss_pred HHHhhhCCCchhHHHHHHHhhhCCCCCCCceeEEEECCEEEEEecCCCCCCChHHHHHHHHHHHHHHHHc
Q 004369 598 LDIFVSAGRWEDVAVVKNLTREEKLSETDDWSWIRIKDKVYSFKPNDGLHPQSAEIFKVLDELVEKAKCF 667 (758)
Q Consensus 598 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~m~~~ 667 (758)
+.++...+++++|.+.+++.++ .-|+...++..+..+.++|+..
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~--------------------------~vP~es~v~~llgki~k~~~~~ 607 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKE--------------------------LVPQESSVFALLGKIYKRLGNT 607 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHH--------------------------hCcchHHHHHHHHHHHHHHccc
Confidence 9999999999999999999986 3355666777777777777654
No 40
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.45 E-value=5e-11 Score=117.42 Aligned_cols=447 Identities=13% Similarity=0.105 Sum_probs=277.1
Q ss_pred HHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHH-HHhcccCChHHHHHHHHHHHHhCCCCC----hhHHHHHHHHHh
Q 004369 147 ISGYVQNSQPELAIHVFLDMLEAGNYPTNVTLGTAL-TACSSLESIRLGKQIHAYVVKYQTEDD----TSVGNSLCSLYS 221 (758)
Q Consensus 147 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~Li~~y~ 221 (758)
..-|..+....+|+..|+-+.+....||...+..-+ ..+.+.+.+..|...+..++..-...+ ..+.+.+.-.+.
T Consensus 208 aqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfi 287 (840)
T KOG2003|consen 208 AQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFI 287 (840)
T ss_pred HHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEE
Confidence 345666777888888888888877778766543322 235566667777777776665432222 223444555677
Q ss_pred hcCChHHHHHHHhccCC--CCcchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHHHHHH
Q 004369 222 TCGSLNSAIKAFNRIRE--KNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVH 299 (758)
Q Consensus 222 ~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 299 (758)
+.|.+++|..-|+...+ ||..+--.||-.+.--|+.++..+.|.+|..--..||..-|.. .
T Consensus 288 q~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~-------~---------- 350 (840)
T KOG2003|consen 288 QAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIK-------E---------- 350 (840)
T ss_pred ecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccC-------C----------
Confidence 77888888888877654 6655433344444556778888888888876544444443310 0
Q ss_pred HHHHHhCCCCchhHHHH-----HHHHHHhcCC--HHH----HHHHHccCCCCCee---echhH-H--HHHhhh---chhh
Q 004369 300 SLGIKLGYASNLRVRNS-----IMYLYLKCGL--VDE----AQKLFDGMSHVNLV---TWNAM-I--AGHAQM---MDLA 359 (758)
Q Consensus 300 ~~~~~~g~~~~~~~~~~-----li~~~~~~g~--~~~----A~~~~~~m~~~~~~---~~~~l-i--~~~~~~---~~~~ 359 (758)
.-.|+....|- .+.-.-+... .++ |.++..-+..|+-. -|..- + +.++.. ....
T Consensus 351 ------~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ 424 (840)
T KOG2003|consen 351 ------KDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEIN 424 (840)
T ss_pred ------cCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhh
Confidence 00111111111 1111111111 111 11222222222211 11100 0 000000 0000
Q ss_pred h-chhhcCCChhHHHHHHHHhHhCCCCCCHH--HHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhc
Q 004369 360 K-DDLSAHNGGTEALSIFSKLNSSGMKPDLY--TFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKC 436 (758)
Q Consensus 360 ~-~~l~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~ 436 (758)
+ ..+..+|+++.|+++++-.....-+.-.. +-..++.-...-.++..|.+.-+..+... .-+....+.-.+.-...
T Consensus 425 ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~n 503 (840)
T KOG2003|consen 425 KAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFAN 503 (840)
T ss_pred HHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeec
Confidence 0 11334999999999998887653332222 22223333333456666766666554432 12222222223334457
Q ss_pred CCHHHHHHHHHhcCCCChhHHHHHH---HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHH
Q 004369 437 GRIERASRVFVEMSTRTLISWTSMI---TGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFE 513 (758)
Q Consensus 437 g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 513 (758)
|++++|.+.+++....|..+-.+|. -.+-..|+.++|++.|-++..- +..+...+..+.+.|....+..+|++++.
T Consensus 504 gd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~ 582 (840)
T KOG2003|consen 504 GDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLM 582 (840)
T ss_pred CcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 9999999999999988776544443 3466789999999999888753 34456777888888999999999999998
Q ss_pred HhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-cCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCc
Q 004369 514 MMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKK-MDFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDC 591 (758)
Q Consensus 514 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 591 (758)
+... -++.|+...+.|.++|-+.|+-..|....-. ...-| +..+..-|..-|....-.+.+...++++--+.|+..
T Consensus 583 q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~ 660 (840)
T KOG2003|consen 583 QANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQS 660 (840)
T ss_pred Hhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHH
Confidence 8764 5666789999999999999999999887544 34445 666766677777777778999999999999999876
Q ss_pred hhHHHHHHHhhhCCCchhHHHHHHHhhhC
Q 004369 592 ESYAMLLDIFVSAGRWEDVAVVKNLTREE 620 (758)
Q Consensus 592 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 620 (758)
.-...++.++.+.|++..|..+++.+..+
T Consensus 661 kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 661 KWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 66677788889999999999999988754
No 41
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=1e-09 Score=109.23 Aligned_cols=250 Identities=12% Similarity=0.118 Sum_probs=193.0
Q ss_pred CCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCC--CChHHHHhHHhhhHHhcCCHHHHH
Q 004369 366 HNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGF--LSDVVVGTALVNMYKKCGRIERAS 443 (758)
Q Consensus 366 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~--~~~~~~~~~Li~~y~~~g~~~~A~ 443 (758)
..+.++++.-.......|+.-+...-+....+.-...+++.|..+|+++.+... -.|..+|+.++-.-..+.++.---
T Consensus 240 l~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA 319 (559)
T KOG1155|consen 240 LHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLA 319 (559)
T ss_pred HHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHH
Confidence 345666776666666666555554444444455667788888888888887631 125667766653333323332222
Q ss_pred HHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCC
Q 004369 444 RVFVEMSTRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIK 522 (758)
Q Consensus 444 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 522 (758)
...-.+.+--+.|...+.+-|+-.++.++|...|++..+ +.|. ...|+.+..-|....+...|.+-++.+.+ -.+
T Consensus 320 ~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p 395 (559)
T KOG1155|consen 320 QNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INP 395 (559)
T ss_pred HHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCc
Confidence 222223333455666777788889999999999999998 4566 55677888899999999999999999975 334
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHH
Q 004369 523 PVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDI 600 (758)
Q Consensus 523 p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 600 (758)
.|-..|-.|..+|.-.+...-|+-+|++. .++| |...|.+|...|.+.++.++|+..+++++..+-.+...+..|+++
T Consensus 396 ~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakL 475 (559)
T KOG1155|consen 396 RDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKL 475 (559)
T ss_pred hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 46788999999999999999999999999 8888 789999999999999999999999999999988888999999999
Q ss_pred hhhCCCchhHHHHHHHhhh
Q 004369 601 FVSAGRWEDVAVVKNLTRE 619 (758)
Q Consensus 601 ~~~~g~~~~a~~~~~~m~~ 619 (758)
|-+.++.++|.+.+++-.+
T Consensus 476 ye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 476 YEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHhHHHHHHHHHHHHH
Confidence 9999999999999988765
No 42
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=7.2e-10 Score=113.11 Aligned_cols=248 Identities=15% Similarity=0.051 Sum_probs=182.6
Q ss_pred CCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHH
Q 004369 366 HNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRV 445 (758)
Q Consensus 366 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~ 445 (758)
.+++.+.++++....+.. ++....+..-|.++...|+-.+-..+-..+++. .|....+|-++.--|.-.|+..+|++.
T Consensus 257 ~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seARry 334 (611)
T KOG1173|consen 257 GCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEARRY 334 (611)
T ss_pred cChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHHHH
Confidence 566666666666655531 223333333334445555544444443344443 355677788888888888999999999
Q ss_pred HHhcCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCC
Q 004369 446 FVEMSTRT---LISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIK 522 (758)
Q Consensus 446 ~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 522 (758)
|.+...-| ...|-.+...|+-.|..++|+..+...-+. ++-....+.-+.--|.+.++.+.|.++|.++. ++.
T Consensus 335 ~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~---ai~ 410 (611)
T KOG1173|consen 335 FSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQAL---AIA 410 (611)
T ss_pred HHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHH---hcC
Confidence 98866443 368999999999999999999999887763 22222233334446888999999999999885 555
Q ss_pred C-CHHHHHHHHHHHHHcCCHHHHHHHHHHc--------CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCch
Q 004369 523 P-VMDHYMCLIDMFVRLGCIEEAFDFIKKM--------DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCE 592 (758)
Q Consensus 523 p-~~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 592 (758)
| |+..++-+.-+....+.+.+|...|+.. +..+ -..+|+.|..+|++.+.+++|+..+++++.+.|.++.
T Consensus 411 P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~ 490 (611)
T KOG1173|consen 411 PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDAS 490 (611)
T ss_pred CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchh
Confidence 5 4566676777777788899999988876 1112 3456899999999999999999999999999999999
Q ss_pred hHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369 593 SYAMLLDIFVSAGRWEDVAVVKNLTRE 619 (758)
Q Consensus 593 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 619 (758)
+|..++-+|...|+++.|...+.+..-
T Consensus 491 ~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 491 THASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 999999999999999999999998763
No 43
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.41 E-value=2.5e-08 Score=99.63 Aligned_cols=478 Identities=12% Similarity=0.074 Sum_probs=299.2
Q ss_pred CCChHHHHHHHccCC---CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccCChHHHHHHH
Q 004369 122 CGNMEEAQKVFDNLP---RINVVSWTSLISGYVQNSQPELAIHVFLDMLEAGNYPTNVTLGTALTACSSLESIRLGKQIH 198 (758)
Q Consensus 122 ~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 198 (758)
.+++..|+.+|+... .++...|---+..=.++.+...|..++++....=...|..-| --+-.=-..|++..|+++|
T Consensus 86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWy-KY~ymEE~LgNi~gaRqif 164 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWY-KYIYMEEMLGNIAGARQIF 164 (677)
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHH-HHHHHHHHhcccHHHHHHH
Confidence 444555566665543 244455555555555666666666666655442111122211 1111223345666666666
Q ss_pred HHHHHhCCCCChhHHHHHHHHHhhcCChHHHHHHHhccC--CCCcchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCCh
Q 004369 199 AYVVKYQTEDDTSVGNSLCSLYSTCGSLNSAIKAFNRIR--EKNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNE 276 (758)
Q Consensus 199 ~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 276 (758)
+.-.. .+|+...|++.|++=.+...++.|+.++++.. .|++.+|--...-=.++|+...|..+|....+. -.|.
T Consensus 165 erW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~~d 240 (677)
T KOG1915|consen 165 ERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LGDD 240 (677)
T ss_pred HHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hhhH
Confidence 66554 45666666666666666666667776666543 366666666666666666666666666665442 1122
Q ss_pred hhHHHHHHHH----cccCChHHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhcCCHHHHHHH--------HccCCCCCe
Q 004369 277 FTLTSISSVC----GTMLSLRVGAQVHSLGIKLGYASN--LRVRNSIMYLYLKCGLVDEAQKL--------FDGMSHVNL 342 (758)
Q Consensus 277 ~t~~~ll~~~----~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~--------~~~m~~~~~ 342 (758)
..-..++.++ .+....+.|.-++..++..- +.+ ...|..+...=-+.|+.....+. ++.+...|+
T Consensus 241 ~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np 319 (677)
T KOG1915|consen 241 EEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNP 319 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCC
Confidence 2222233333 33456677777777776653 222 34455555554555654333322 222223444
Q ss_pred e---echhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCHH-------HHHH---HHHHHhcccchHHHHH
Q 004369 343 V---TWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLY-------TFSS---ILTICSRLVALEQGEQ 409 (758)
Q Consensus 343 ~---~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~-------t~~~---ll~a~~~~~~~~~a~~ 409 (758)
. +|--.+..-.. .|+.+...++|++.+.. ++|-.. .|.- .+-.-....+++.+++
T Consensus 320 ~nYDsWfdylrL~e~-----------~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~ 387 (677)
T KOG1915|consen 320 YNYDSWFDYLRLEES-----------VGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQ 387 (677)
T ss_pred CCchHHHHHHHHHHh-----------cCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 4 44444444444 89999999999999875 555221 1111 1112245678999999
Q ss_pred HHHHHHHcCCCChHHHHhHHhhhHH----hcCCHHHHHHHHHhcC--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004369 410 IHALTLKTGFLSDVVVGTALVNMYK----KCGRIERASRVFVEMS--TRTLISWTSMITGFANHSLSHQALQLFEDMLLA 483 (758)
Q Consensus 410 i~~~~~~~~~~~~~~~~~~Li~~y~----~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 483 (758)
++...++. ++....++..+=-+|+ ++.++..|.+++.... .|-..++...|..-.+.++++.+..++++.++-
T Consensus 388 vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~ 466 (677)
T KOG1915|consen 388 VYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF 466 (677)
T ss_pred HHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 99988883 4556667776655665 5789999999998866 456677888888888999999999999999985
Q ss_pred CCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCCHHHHHH
Q 004369 484 GVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEPNEVIWSV 562 (758)
Q Consensus 484 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ 562 (758)
+ +-|..+|.....-=...|+.+.|..+|+-+.....+......|.+.|+.=...|.+++|..++++. ...+...+|-+
T Consensus 467 ~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWis 545 (677)
T KOG1915|consen 467 S-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWIS 545 (677)
T ss_pred C-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHh
Confidence 3 335677777777677889999999999999886555555677888899889999999999999998 55556668887
Q ss_pred HHHHHH-----HcC-----------ChhHHHHHHHHHhcc----CCCC--chhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369 563 FIAGCR-----RHG-----------NMELGFYAAEQLLKL----KPKD--CESYAMLLDIFVSAGRWEDVAVVKNLTRE 619 (758)
Q Consensus 563 ll~~~~-----~~g-----------~~~~a~~~~~~~~~~----~p~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 619 (758)
+..--. +.+ +...|..+|+++... +|.. .......-++=...|...+...+-..|.+
T Consensus 546 FA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mPk 624 (677)
T KOG1915|consen 546 FAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMPK 624 (677)
T ss_pred HHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhccH
Confidence 765433 233 556788888887653 3321 12233344455666777777777777765
No 44
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.39 E-value=4.7e-11 Score=124.26 Aligned_cols=276 Identities=15% Similarity=0.066 Sum_probs=208.9
Q ss_pred CHHHHHHHHccCCC--CCee-echhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCC-C-CCCHHHHHHHHHHHhc
Q 004369 326 LVDEAQKLFDGMSH--VNLV-TWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSG-M-KPDLYTFSSILTICSR 400 (758)
Q Consensus 326 ~~~~A~~~~~~m~~--~~~~-~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g-~-~p~~~t~~~ll~a~~~ 400 (758)
+..+|...|..++. .|.. ....+..+|.. .+++++|.++|+...+.. . .-+...|.++|--+-+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFE-----------l~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~ 402 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFE-----------LIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD 402 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh
Confidence 35677777777554 3332 12334556666 778888888888876642 1 1255677777655432
Q ss_pred ccchHHHHHHH-HHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCCCC---hhHHHHHHHHHHhcCCHHHHHHH
Q 004369 401 LVALEQGEQIH-ALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMSTRT---LISWTSMITGFANHSLSHQALQL 476 (758)
Q Consensus 401 ~~~~~~a~~i~-~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~ 476 (758)
. -+...+ ..+++. -+..+.+|.++.+.|.-.++.+.|++.|++..+-| ..+|+.+..-+.....+|.|...
T Consensus 403 ~----v~Ls~Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~ 477 (638)
T KOG1126|consen 403 E----VALSYLAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKS 477 (638)
T ss_pred h----HHHHHHHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHH
Confidence 1 122222 222222 25568899999999999999999999999987554 46788888888888999999999
Q ss_pred HHHHHHcCCCCCH-HHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHc-CC
Q 004369 477 FEDMLLAGVRPNQ-VTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPV-MDHYMCLIDMFVRLGCIEEAFDFIKKM-DF 553 (758)
Q Consensus 477 ~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~ 553 (758)
|+..+. +.|.. ..|..+...|.+.++++.|.-.|+.+. .+.|. .....++...+-+.|+.|+|+.+++++ -.
T Consensus 478 fr~Al~--~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l 552 (638)
T KOG1126|consen 478 FRKALG--VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL 552 (638)
T ss_pred HHhhhc--CCchhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc
Confidence 999875 45553 467778889999999999999999986 46665 566778888999999999999999998 55
Q ss_pred CC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhhCCC
Q 004369 554 EP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREEKL 622 (758)
Q Consensus 554 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 622 (758)
+| |+..--.-+..+...+++++|++.++++.++-|++..+|..++.+|.+.|+.+.|..-+..+.+.+.
T Consensus 553 d~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 553 DPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred CCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 55 5544445566667789999999999999999999999999999999999999999998888876443
No 45
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.39 E-value=2.9e-09 Score=106.10 Aligned_cols=416 Identities=12% Similarity=0.143 Sum_probs=285.6
Q ss_pred hcCChHHHHHHHhccCC---CCcchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHHHHH
Q 004369 222 TCGSLNSAIKAFNRIRE---KNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQV 298 (758)
Q Consensus 222 ~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 298 (758)
..+++..|+.+|+.... ++...|---+..=.++.+...|..++++....=...|..=| --+-.=-..|++..|.++
T Consensus 85 sq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWy-KY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWY-KYIYMEEMLGNIAGARQI 163 (677)
T ss_pred hHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHH-HHHHHHHHhcccHHHHHH
Confidence 44667778888877765 56667777777777788888888888877654222232211 122223345788888888
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCC--CCCeeechhHHHHHhhhchhhhchhhcCCChhHHHHHH
Q 004369 299 HSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMS--HVNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIF 376 (758)
Q Consensus 299 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~ 376 (758)
|+.-.+ ..|+...|++.|+.=.+-..++.|+.++++.. .|++.+|--...--.+ +|+..-|..+|
T Consensus 164 ferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k-----------~g~~~~aR~Vy 230 (677)
T KOG1915|consen 164 FERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEK-----------HGNVALARSVY 230 (677)
T ss_pred HHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHh-----------cCcHHHHHHHH
Confidence 887665 47888888888888888888888888888754 4777777655554445 78888888888
Q ss_pred HHhHhC-CC-CCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCh--HHHHhHHhhhHHhcCCHHHHHHHH------
Q 004369 377 SKLNSS-GM-KPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSD--VVVGTALVNMYKKCGRIERASRVF------ 446 (758)
Q Consensus 377 ~~m~~~-g~-~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~--~~~~~~Li~~y~~~g~~~~A~~~~------ 446 (758)
....+. |- .-+...|.+...--.+...++.|.-++...++.- +.+ ...|..+...--+-|+.....++.
T Consensus 231 erAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~ 309 (677)
T KOG1915|consen 231 ERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKF 309 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhh
Confidence 776652 10 1122233333333345667888888998888752 333 456666666555666655444432
Q ss_pred --HhcCCC---ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHH---hccccHHHHHHH
Q 004369 447 --VEMSTR---TLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQ-------VTFVGALAAC---SNAGMVYEALGY 511 (758)
Q Consensus 447 --~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~a~---~~~g~~~~a~~~ 511 (758)
+.+... |-.+|--.+..-...|+.+...++|++.... ++|-. ..|.-+=-+| ....+++.+.++
T Consensus 310 qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~v 388 (677)
T KOG1915|consen 310 QYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQV 388 (677)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 222233 4467777777777889999999999999875 56632 1222222222 346788999999
Q ss_pred HHHhhhhcCCCCCHHHHHHHHHHHH----HcCCHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhcc
Q 004369 512 FEMMQKEYKIKPVMDHYMCLIDMFV----RLGCIEEAFDFIKKM-DFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKL 586 (758)
Q Consensus 512 ~~~~~~~~~~~p~~~~~~~li~~~~----~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 586 (758)
++...+ -++....++..+--+|+ |+-++..|.+++..+ |.-|-..++...|..-.+.++++....++++.++-
T Consensus 389 yq~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~ 466 (677)
T KOG1915|consen 389 YQACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF 466 (677)
T ss_pred HHHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 998876 45555666666655554 778999999999887 88899999999999889999999999999999999
Q ss_pred CCCCchhHHHHHHHhhhCCCchhHHHHHHHhhhCCCCCCCceeEEEECCEEEEEecCCCCCCChHHHHHHHHH
Q 004369 587 KPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREEKLSETDDWSWIRIKDKVYSFKPNDGLHPQSAEIFKVLDE 659 (758)
Q Consensus 587 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~ 659 (758)
.|.+..++...+..=...|+++.|..+++...++.....|..-|-. -.-|......+..+..+|..|.+
T Consensus 467 ~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwka----YIdFEi~~~E~ekaR~LYerlL~ 535 (677)
T KOG1915|consen 467 SPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKA----YIDFEIEEGEFEKARALYERLLD 535 (677)
T ss_pred ChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHH----hhhhhhhcchHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999887655555554411 11333333445555666655443
No 46
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.38 E-value=2.8e-10 Score=120.77 Aligned_cols=225 Identities=11% Similarity=-0.008 Sum_probs=146.6
Q ss_pred HHHHHhcCCHHHHHHHHccCCC---CCeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCHHHHHHH
Q 004369 318 MYLYLKCGLVDEAQKLFDGMSH---VNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSI 394 (758)
Q Consensus 318 i~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 394 (758)
...+...|+++.|...++++.+ .+......+...|.+ .|++++|++++..+.+.+..++. .+..+
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~-----------~gdw~~a~~~l~~l~k~~~~~~~-~~~~l 227 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIR-----------TGAWSSLLDILPSMAKAHVGDEE-HRAML 227 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-----------HHhHHHHHHHHHHHHHcCCCCHH-HHHHH
Confidence 5566677777777777777654 233445566667777 78888888888888776543222 11100
Q ss_pred HHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCCHH
Q 004369 395 LTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMS---TRTLISWTSMITGFANHSLSH 471 (758)
Q Consensus 395 l~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~ 471 (758)
-. .+|..++....+..+.+...++++.++ +.++.....+..++...|+.+
T Consensus 228 ~~---------------------------~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~ 280 (398)
T PRK10747 228 EQ---------------------------QAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHD 280 (398)
T ss_pred HH---------------------------HHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHH
Confidence 00 011111111222233444555555554 346667777788888888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 004369 472 QALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM 551 (758)
Q Consensus 472 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 551 (758)
+|.+++++..+. .||... .++.+....++.+++.+..+...+. .+-|...+.++..++.+.|++++|.+.|++.
T Consensus 281 ~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~a 354 (398)
T PRK10747 281 TAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAA 354 (398)
T ss_pred HHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 888888887773 444421 1233344558888888888888763 3334566778888888888888888888887
Q ss_pred -CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhccC
Q 004369 552 -DFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLK 587 (758)
Q Consensus 552 -~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 587 (758)
...|+...+..|...+.+.|+.++|.+++++.+.+-
T Consensus 355 l~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 355 LKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 777888888888888888888888888888887653
No 47
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.36 E-value=2.2e-12 Score=130.82 Aligned_cols=251 Identities=14% Similarity=0.195 Sum_probs=109.3
Q ss_pred HHHHHHHhcCCHHHHHHHHcc-CCC----CCeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCHHH
Q 004369 316 SIMYLYLKCGLVDEAQKLFDG-MSH----VNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYT 390 (758)
Q Consensus 316 ~li~~~~~~g~~~~A~~~~~~-m~~----~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t 390 (758)
.+..++.+.|++++|.++++. +.. .|..-|..+...... .+++++|...++++...+.. +...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~-----------~~~~~~A~~ay~~l~~~~~~-~~~~ 80 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWS-----------LGDYDEAIEAYEKLLASDKA-NPQD 80 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccc-----------cccccccccccccccccccc-cccc
Confidence 456777788888888888853 222 234445444444444 78888888888888775432 4445
Q ss_pred HHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcC-----CCChhHHHHHHHHHH
Q 004369 391 FSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMS-----TRTLISWTSMITGFA 465 (758)
Q Consensus 391 ~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~ 465 (758)
+..++.. ...+++++|.++.....+.. ++...+..++..|.+.|+++++.++++.+. +.+...|..+...+.
T Consensus 81 ~~~l~~l-~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~ 157 (280)
T PF13429_consen 81 YERLIQL-LQDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYE 157 (280)
T ss_dssp ----------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHH
T ss_pred ccccccc-cccccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHH
Confidence 5555555 67788888888876665542 456667778888999999999999988854 346778889999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 004369 466 NHSLSHQALQLFEDMLLAGVRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEA 544 (758)
Q Consensus 466 ~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 544 (758)
+.|+.++|++.+++..+. .|+ ......++..+...|+.+++.++++...+. .+.+...+..+..+|...|+.++|
T Consensus 158 ~~G~~~~A~~~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~A 233 (280)
T PF13429_consen 158 QLGDPDKALRDYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEA 233 (280)
T ss_dssp HCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHH
T ss_pred HcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CcCHHHHHHHHHHHhccccccccc
Confidence 999999999999999984 665 667888999999999999999999988774 255566788999999999999999
Q ss_pred HHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhc
Q 004369 545 FDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLK 585 (758)
Q Consensus 545 ~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 585 (758)
+..+++. ...| |..+...+..++...|+.++|.++.+++++
T Consensus 234 l~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 234 LEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999998 5456 777788999999999999999999888765
No 48
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.35 E-value=1.6e-09 Score=115.76 Aligned_cols=286 Identities=12% Similarity=0.010 Sum_probs=143.1
Q ss_pred hCCChhhHHHHHHHHHHCCCCCChh-hHHHHHHHHcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 004369 253 ENGEAVQGLRFFSKMLSEGIQPNEF-TLTSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQ 331 (758)
Q Consensus 253 ~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 331 (758)
..|+++.|.+.+.+..+. .|+.. .+.....+....|+.+.+.+.+..+.+....+...+.-.....+...
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~------- 166 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQ------- 166 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHC-------
Confidence 467777777777766553 23322 22233344444555555555555554432111112222234444444
Q ss_pred HHHccCCCCCeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHhcccchHHHHHHH
Q 004369 332 KLFDGMSHVNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIH 411 (758)
Q Consensus 332 ~~~~~m~~~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~ 411 (758)
|++++|+..++.+.+.. +-+...+..+...+...|+++.+.+.+
T Consensus 167 -----------------------------------~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l 210 (409)
T TIGR00540 167 -----------------------------------NELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDII 210 (409)
T ss_pred -----------------------------------CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 44444444444444432 112233444444445555555555555
Q ss_pred HHHHHcCCCChHHH-------HhHHhhhHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004369 412 ALTLKTGFLSDVVV-------GTALVNMYKKCGRIERASRVFVEMST---RTLISWTSMITGFANHSLSHQALQLFEDML 481 (758)
Q Consensus 412 ~~~~~~~~~~~~~~-------~~~Li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 481 (758)
....+.+..+.... +..+++.-......+...+.++..+. .++..+..+...+...|+.++|++++++..
T Consensus 211 ~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l 290 (409)
T TIGR00540 211 DNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGL 290 (409)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 54444433222111 11111111112223344444555442 366777777788888888888888888877
Q ss_pred HcCCCCCHHHH---HHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH--c-CCCC
Q 004369 482 LAGVRPNQVTF---VGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKK--M-DFEP 555 (758)
Q Consensus 482 ~~g~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~--m-~~~p 555 (758)
+. .||.... ..........++.+.+.+.++...+...-.|+.....++...+.+.|++++|.+.|++ . ...|
T Consensus 291 ~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p 368 (409)
T TIGR00540 291 KK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQL 368 (409)
T ss_pred hh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCC
Confidence 74 3443311 1111122234556666666666554332223224445666666666666666666663 2 4456
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHhc
Q 004369 556 NEVIWSVFIAGCRRHGNMELGFYAAEQLLK 585 (758)
Q Consensus 556 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 585 (758)
|...+..+...+.+.|+.++|.+++++.+.
T Consensus 369 ~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 369 DANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666666666666666666666666666543
No 49
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.35 E-value=2.6e-09 Score=113.40 Aligned_cols=244 Identities=12% Similarity=0.027 Sum_probs=177.1
Q ss_pred CCChhHHHHHHHHhHhCCCCCCHHHHH--HHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHH
Q 004369 366 HNGGTEALSIFSKLNSSGMKPDLYTFS--SILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERAS 443 (758)
Q Consensus 366 ~g~~~~A~~l~~~m~~~g~~p~~~t~~--~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~ 443 (758)
.|++++|...|.++.+. .|+..... .....+...|+.+.|...++.+.+.. +.+..+...+...|.+.|++++|.
T Consensus 131 ~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~ 207 (398)
T PRK10747 131 RGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLL 207 (398)
T ss_pred CCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHH
Confidence 67777777777776653 44433222 22345566677777777777776654 456677777888888888888888
Q ss_pred HHHHhcCCCCh-----------hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHH
Q 004369 444 RVFVEMSTRTL-----------ISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYF 512 (758)
Q Consensus 444 ~~~~~~~~~~~-----------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 512 (758)
+++..+.+... ..|..++.......+.+...++++.+-+. .+.+......+..++...|+.++|.+.+
T Consensus 208 ~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L 286 (398)
T PRK10747 208 DILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQII 286 (398)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 77777763321 13444444444455566667777766443 3446778888889999999999999999
Q ss_pred HHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCC
Q 004369 513 EMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKD 590 (758)
Q Consensus 513 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 590 (758)
+...+ ..|+.... ++......++.+++++.+++. ...| |...+..+...|...+++++|.+.++++++..|++
T Consensus 287 ~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~ 361 (398)
T PRK10747 287 LDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA 361 (398)
T ss_pred HHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH
Confidence 98865 34554322 233334559999999999988 6667 55668899999999999999999999999999985
Q ss_pred chhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369 591 CESYAMLLDIFVSAGRWEDVAVVKNLTRE 619 (758)
Q Consensus 591 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 619 (758)
..+..|+.++.+.|+.++|.+.++.-..
T Consensus 362 -~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 362 -YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6678999999999999999999987654
No 50
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.33 E-value=6.9e-10 Score=118.56 Aligned_cols=283 Identities=11% Similarity=0.039 Sum_probs=192.1
Q ss_pred hhcCChHHHHHHHhccCC--CCcc-hHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChh--hHHHHHHHHcccCChHHH
Q 004369 221 STCGSLNSAIKAFNRIRE--KNVM-SWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEF--TLTSISSVCGTMLSLRVG 295 (758)
Q Consensus 221 ~~~g~~~~A~~~f~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~~~~~~~~~~~a 295 (758)
...|+++.|++.+.+..+ |+.. .+-.....+.+.|+++.|.+.|.+..+.. |+.. .-..........|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHH
Confidence 367999999999988766 3322 23334466778899999999999987643 5543 333346677788999999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCeeechhHHHHHhhhchhhhchhhcCCChhHHHHH
Q 004369 296 AQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSHVNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSI 375 (758)
Q Consensus 296 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l 375 (758)
.+.++.+.+.. +.+..+...+...|.+.|++++|.+.+..+.+.
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~----------------------------------- 216 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKA----------------------------------- 216 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc-----------------------------------
Confidence 99999999886 556677778888888877777777776666542
Q ss_pred HHHhHhCCCCCCHHHHHHHHHHH---hcccchHHHHHHHHHHHHcC---CCChHHHHhHHhhhHHhcCCHHHHHHHHHhc
Q 004369 376 FSKLNSSGMKPDLYTFSSILTIC---SRLVALEQGEQIHALTLKTG---FLSDVVVGTALVNMYKKCGRIERASRVFVEM 449 (758)
Q Consensus 376 ~~~m~~~g~~p~~~t~~~ll~a~---~~~~~~~~a~~i~~~~~~~~---~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~ 449 (758)
++.+.......-..+. ...+..+.+.+.+..+.+.. .+.+...+..++..+...|+.++|.+++++.
T Consensus 217 -------~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~ 289 (409)
T TIGR00540 217 -------GLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDG 289 (409)
T ss_pred -------CCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 1111110000000000 01111111222222222221 1236778888888999999999999999887
Q ss_pred CCC--ChhH---HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHhccccHHHHHHHHHHhhhhcCC
Q 004369 450 STR--TLIS---WTSMITGFANHSLSHQALQLFEDMLLAGVRPNQ---VTFVGALAACSNAGMVYEALGYFEMMQKEYKI 521 (758)
Q Consensus 450 ~~~--~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 521 (758)
.+. |... +..........++.+.+++.+++..+. .|+. ....++...|.+.|++++|.++|+.... +..
T Consensus 290 l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a-~~~ 366 (409)
T TIGR00540 290 LKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAA-CKE 366 (409)
T ss_pred HhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHH-hhc
Confidence 643 3221 122222334457888999999888874 5654 4556788899999999999999995433 356
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 004369 522 KPVMDHYMCLIDMFVRLGCIEEAFDFIKKM 551 (758)
Q Consensus 522 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 551 (758)
.|+...+..+...+.+.|+.++|.+++++.
T Consensus 367 ~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 367 QLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 799998999999999999999999999874
No 51
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.32 E-value=5.6e-07 Score=93.57 Aligned_cols=446 Identities=13% Similarity=0.141 Sum_probs=259.2
Q ss_pred hHHHHHHHhhcCCCcHHHHHHHHHHHHh-CCCCchhHHHHHHHHhhcCCChHHHHHHHccCCCCCcchHHHHHHHHHhCC
Q 004369 76 SYVSLLQECVNRKSLSNAEIIHAHIVKT-GSHQDFFVMTFLVNVYGKCGNMEEAQKVFDNLPRINVVSWTSLISGYVQNS 154 (758)
Q Consensus 76 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g 154 (758)
.|..-++.....|++..-+..|+..+.. .+.....+|...+...-..|-++-+.+++++..+-++..-+--|.-++..+
T Consensus 104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d 183 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSD 183 (835)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 3444455555666666666777666543 222334566666666666777777777777766656666677777777788
Q ss_pred CchHHHHHHHHHHHcC------CCCChhhHHHHHHHhcccCChHHHHHHHHHHHHhCC--CCC--hhHHHHHHHHHhhcC
Q 004369 155 QPELAIHVFLDMLEAG------NYPTNVTLGTALTACSSLESIRLGKQIHAYVVKYQT--EDD--TSVGNSLCSLYSTCG 224 (758)
Q Consensus 155 ~~~~A~~~~~~m~~~g------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~--~~~~~~Li~~y~~~g 224 (758)
++++|.+.+....... .+-+...|.-+-...++..+.-....+ +.+++.|+ -+| ...|.+|.+.|.+.|
T Consensus 184 ~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnv-daiiR~gi~rftDq~g~Lw~SLAdYYIr~g 262 (835)
T KOG2047|consen 184 RLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNV-DAIIRGGIRRFTDQLGFLWCSLADYYIRSG 262 (835)
T ss_pred chHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCH-HHHHHhhcccCcHHHHHHHHHHHHHHHHhh
Confidence 8888777777665321 122334454444444444333322222 22333332 233 357899999999999
Q ss_pred ChHHHHHHHhccCCC--CcchHHHHHHHHhhC----------------CC------hhhHHHHHHHHHHCCC--------
Q 004369 225 SLNSAIKAFNRIREK--NVMSWTTVIGACGEN----------------GE------AVQGLRFFSKMLSEGI-------- 272 (758)
Q Consensus 225 ~~~~A~~~f~~~~~~--~~~~~~~li~~~~~~----------------g~------~~~A~~l~~~m~~~g~-------- 272 (758)
.++.|..+|++..+. .+.-++.+.++|++- |+ ++-.+.-|+.+...+.
T Consensus 263 ~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlL 342 (835)
T KOG2047|consen 263 LFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLL 342 (835)
T ss_pred hhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHH
Confidence 999999999876652 222333333333321 11 1222233333332210
Q ss_pred C---CChhhHHHHHHHHcccCChHHHHHHHHHHHHhC-----CCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCeee
Q 004369 273 Q---PNEFTLTSISSVCGTMLSLRVGAQVHSLGIKLG-----YASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSHVNLVT 344 (758)
Q Consensus 273 ~---p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 344 (758)
. -+..++..-.. ...|+..+-...+.++++.- ...-...|..+.+.|-..|+++.|+.+|++..+-+-.+
T Consensus 343 RQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~ 420 (835)
T KOG2047|consen 343 RQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKT 420 (835)
T ss_pred hcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccc
Confidence 0 11111211111 22345556666677766542 11233578889999999999999999999987744444
Q ss_pred chhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCC----------CCC-------CHHHHHHHHHHHhcccchHHH
Q 004369 345 WNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSG----------MKP-------DLYTFSSILTICSRLVALEQG 407 (758)
Q Consensus 345 ~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g----------~~p-------~~~t~~~ll~a~~~~~~~~~a 407 (758)
-+-|-..++.-+...- ...+++.|+++.+.....- -.| +...+...+..-...|-++..
T Consensus 421 v~dLa~vw~~waemEl----rh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfest 496 (835)
T KOG2047|consen 421 VEDLAEVWCAWAEMEL----RHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFEST 496 (835)
T ss_pred hHHHHHHHHHHHHHHH----hhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHH
Confidence 3334444433222111 1778889998887764321 111 112233344444556778888
Q ss_pred HHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcC----CCCh-hHHHHHHHHHHh---cCCHHHHHHHHHH
Q 004369 408 EQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMS----TRTL-ISWTSMITGFAN---HSLSHQALQLFED 479 (758)
Q Consensus 408 ~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~----~~~~-~~~~~li~~~~~---~g~~~~A~~~~~~ 479 (758)
+.+++.+++..+..-..+.| ..-.+-...-++++.+++++-. -|++ ..||+.+.-+.+ ....+.|..+|++
T Consensus 497 k~vYdriidLriaTPqii~N-yAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEq 575 (835)
T KOG2047|consen 497 KAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQ 575 (835)
T ss_pred HHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 88999998876543333322 2223445667899999998855 3454 478887766654 2458999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHH--hccccHHHHHHHHHHhhhhcCCCCC--HHHHHHHH
Q 004369 480 MLLAGVRPNQVTFVGALAAC--SNAGMVYEALGYFEMMQKEYKIKPV--MDHYMCLI 532 (758)
Q Consensus 480 m~~~g~~p~~~t~~~ll~a~--~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li 532 (758)
.++ |.+|...-+.-|+-|- .+-|....|..+++++.. ++++. ...|+..|
T Consensus 576 aL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~a~~l~myni~I 629 (835)
T KOG2047|consen 576 ALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKEAQRLDMYNIYI 629 (835)
T ss_pred HHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHHHHHHHHH
Confidence 999 7777765444444332 235778888888888765 44443 23455444
No 52
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.32 E-value=3.8e-10 Score=111.14 Aligned_cols=199 Identities=11% Similarity=0.030 Sum_probs=167.7
Q ss_pred CChHHHHhHHhhhHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004369 420 LSDVVVGTALVNMYKKCGRIERASRVFVEMS---TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGAL 496 (758)
Q Consensus 420 ~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 496 (758)
......+..+...|.+.|++++|.+.|++.. +.+...|..+...|...|++++|++.+++..+.. +.+...+..+.
T Consensus 28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~ 106 (234)
T TIGR02521 28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYG 106 (234)
T ss_pred CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 3346677888999999999999999999865 3356788889999999999999999999998853 33456777788
Q ss_pred HHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChh
Q 004369 497 AACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNME 574 (758)
Q Consensus 497 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~ 574 (758)
..+...|++++|.+.++.+.+..........+..+...+.+.|++++|.+.+++. ...| +...|..+...+...|+++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHH
Confidence 8899999999999999999763222334567778899999999999999999988 5455 4667888999999999999
Q ss_pred HHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369 575 LGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTRE 619 (758)
Q Consensus 575 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 619 (758)
+|...++++++..|.++..+..++.++...|++++|..+.+.+.+
T Consensus 187 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 187 DARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999999999999888888899999999999999999999887754
No 53
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.26 E-value=1.1e-08 Score=109.47 Aligned_cols=477 Identities=13% Similarity=0.046 Sum_probs=231.3
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHhhcCCChHHHHHHHccCCCC----CcchHHHHHHHHHhCCCchHHHHHHHHHHHcC
Q 004369 95 IIHAHIVKTGSHQDFFVMTFLVNVYGKCGNMEEAQKVFDNLPRI----NVVSWTSLISGYVQNSQPELAIHVFLDMLEAG 170 (758)
Q Consensus 95 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 170 (758)
.++..+...|+.|+..+|.+||.-||..|+++.|- +|.-|.-+ +...++.++.+..+.++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 35566778899999999999999999999999999 89888754 3456899999998999888775
Q ss_pred CCCChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHhhcCChHHHHHHHhccCC-C-CcchHHHHH
Q 004369 171 NYPTNVTLGTALTACSSLESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGSLNSAIKAFNRIRE-K-NVMSWTTVI 248 (758)
Q Consensus 171 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~-~-~~~~~~~li 248 (758)
.|-..||..++.+|...||+..-..+-+.+. .++..++..|--..-..++-.+.- | -...-...|
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe------------~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~i 146 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLILFEVVEQDLE------------SINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAI 146 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHHHHHHHHHHH------------HHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHH
Confidence 6889999999999999999765222211111 111222233333333333322211 0 000011122
Q ss_pred HHHhhCCChhhHHHHHHHHHHCC-CCCChhhHHHHHHHHcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 004369 249 GACGENGEAVQGLRFFSKMLSEG-IQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLV 327 (758)
Q Consensus 249 ~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 327 (758)
.-....|-++.+++++..|.... ..|-.+ +++-+... ..-.+++.......--.++..++.++++.-...|++
T Consensus 147 lllv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~ 220 (1088)
T KOG4318|consen 147 LLLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDV 220 (1088)
T ss_pred HHHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCch
Confidence 22233344444444444332210 001111 12222211 111222222222111134555555555555555555
Q ss_pred HHHHHHHccCCCCCe----eechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHhcccc
Q 004369 328 DEAQKLFDGMSHVNL----VTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVA 403 (758)
Q Consensus 328 ~~A~~~~~~m~~~~~----~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 403 (758)
+.|..++.+|.+... .-+-.++-+ .+...-+..+++-|++.|+.|+..|+.-.+..|...|.
T Consensus 221 d~Ak~ll~emke~gfpir~HyFwpLl~g--------------~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 221 DGAKNLLYEMKEKGFPIRAHYFWPLLLG--------------INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred hhHHHHHHHHHHcCCCcccccchhhhhc--------------CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 555555555544211 111122222 34444555566666666666666666665555555333
Q ss_pred hHHHHHHH-----------HHH----------------------H---HcCCCChHHHHhHHhhhHHhcCCHHHHHHHHH
Q 004369 404 LEQGEQIH-----------ALT----------------------L---KTGFLSDVVVGTALVNMYKKCGRIERASRVFV 447 (758)
Q Consensus 404 ~~~a~~i~-----------~~~----------------------~---~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~ 447 (758)
...+.... ..+ . -.|+.....+|...+.. ...|+-++.+++-.
T Consensus 287 t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg 365 (1088)
T KOG4318|consen 287 TKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVG 365 (1088)
T ss_pred hhhcccccchhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHh
Confidence 22111100 000 0 01222222222221111 11344444444444
Q ss_pred hcCCC-------ChhHHHHHHHHHHhcCCHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhh-
Q 004369 448 EMSTR-------TLISWTSMITGFANHSLSH--QALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQK- 517 (758)
Q Consensus 448 ~~~~~-------~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~- 517 (758)
.+..+ ++..|..++.-|.+.-+.. +-.....+...... +... +-.+.-|...-+...+.+-+.....
T Consensus 366 ~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l--~se~-tp~vsell~~lrkns~lr~lv~Lss~ 442 (1088)
T KOG4318|consen 366 QLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSLNL--NSED-TPRVSELLENLRKNSFLRQLVGLSST 442 (1088)
T ss_pred hhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh--chhh-hHHHHHHHHHhCcchHHHHHhhhhHH
Confidence 44322 2233333333322211100 00000001000000 0000 0000000000011111111111100
Q ss_pred --hcCCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhccCC
Q 004369 518 --EYKIKP-------VMDHYMCLIDMFVRLGCIEEAFDFIKKMDFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKP 588 (758)
Q Consensus 518 --~~~~~p-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 588 (758)
.....| -...-+.++..+++.-+..+++...++..-.-=...|..|+.-|..+...+.|....++....+.
T Consensus 443 Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~ 522 (1088)
T KOG4318|consen 443 ELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLLFAGLYALLIKLMDLHDKLEYALSFVDEIDTRDE 522 (1088)
T ss_pred HHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHhchhhhcccch
Confidence 001111 11233456667777777777776555541111125688999999999999999999888876542
Q ss_pred C---CchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369 589 K---DCESYAMLLDIFVSAGRWEDVAVVKNLTRE 619 (758)
Q Consensus 589 ~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 619 (758)
. +..-+..+.+.+.+.+...++.++.+.+++
T Consensus 523 s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks 556 (1088)
T KOG4318|consen 523 SIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKS 556 (1088)
T ss_pred hhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhH
Confidence 2 456788899999999999999999999886
No 54
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.24 E-value=2.1e-08 Score=98.65 Aligned_cols=287 Identities=13% Similarity=0.059 Sum_probs=194.6
Q ss_pred CCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 004369 254 NGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKL 333 (758)
Q Consensus 254 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 333 (758)
.|++.+|.++..+-.+.+-.| ...|.....+.-..|+.+.+-++..++-+.--.++..+.-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 688888888888866665443 3345566666777788888888888877765466667777777777777877777766
Q ss_pred HccCCC---CCeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHhcccchHHHHHH
Q 004369 334 FDGMSH---VNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQI 410 (758)
Q Consensus 334 ~~~m~~---~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i 410 (758)
.+++.+ .++.........|.+ .|++.+.+.++.+|.+.|+--|...-. +
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~-----------~g~~~~ll~~l~~L~ka~~l~~~e~~~-----------------l 227 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIR-----------LGAWQALLAILPKLRKAGLLSDEEAAR-----------------L 227 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHH-----------hccHHHHHHHHHHHHHccCCChHHHHH-----------------H
Confidence 665433 455566667777777 777888888888777776544432110 0
Q ss_pred HHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 004369 411 HALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMS---TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRP 487 (758)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 487 (758)
...+++.+++-....+..+.-...++..+ +.++..-.+++.-+.+.|+.++|.++.++..+.+..|
T Consensus 228 -----------e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~ 296 (400)
T COG3071 228 -----------EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDP 296 (400)
T ss_pred -----------HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccCh
Confidence 11223333333333333333344555554 3355566667777788888888888888888877777
Q ss_pred CHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCCHHHHHHHHHH
Q 004369 488 NQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEPNEVIWSVFIAG 566 (758)
Q Consensus 488 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~ 566 (758)
+..+ +-.+.+.++...-.+..+...+.++..| ..+.+|...|.+.+.+.+|.+.|+.. ...|+..+|+-+..+
T Consensus 297 ~L~~----~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~ 370 (400)
T COG3071 297 RLCR----LIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADA 370 (400)
T ss_pred hHHH----HHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHH
Confidence 6222 2245667777777777777666555555 66778888888888888888888876 778888888888888
Q ss_pred HHHcCChhHHHHHHHHHhcc
Q 004369 567 CRRHGNMELGFYAAEQLLKL 586 (758)
Q Consensus 567 ~~~~g~~~~a~~~~~~~~~~ 586 (758)
+.+.|+.++|.+..++.+.+
T Consensus 371 ~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 371 LDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHcCChHHHHHHHHHHHHH
Confidence 88888888888888777643
No 55
>PF13041 PPR_2: PPR repeat family
Probab=99.24 E-value=1.7e-11 Score=86.88 Aligned_cols=50 Identities=22% Similarity=0.464 Sum_probs=48.1
Q ss_pred CCcchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcc
Q 004369 239 KNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGT 288 (758)
Q Consensus 239 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 288 (758)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||++++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
No 56
>PF13041 PPR_2: PPR repeat family
Probab=99.23 E-value=2.9e-11 Score=85.72 Aligned_cols=50 Identities=20% Similarity=0.503 Sum_probs=47.2
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 004369 452 RTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSN 501 (758)
Q Consensus 452 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 501 (758)
||+++||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68899999999999999999999999999999999999999999999875
No 57
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=1.3e-07 Score=93.02 Aligned_cols=309 Identities=11% Similarity=-0.003 Sum_probs=216.2
Q ss_pred CChhhHHHHHHHHcc--cCChHHHHHHHHHHHHh-CCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCeeechhHHH
Q 004369 274 PNEFTLTSISSVCGT--MLSLRVGAQVHSLGIKL-GYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSHVNLVTWNAMIA 350 (758)
Q Consensus 274 p~~~t~~~ll~~~~~--~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~ 350 (758)
|+..+....+.+++. .++-..+.+.+..+.+. -++.|+....++.+.|...|+.++|...|++...-|+.+...| .
T Consensus 192 ~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~M-D 270 (564)
T KOG1174|consen 192 DHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAM-D 270 (564)
T ss_pred CCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhH-H
Confidence 333444444444433 34444455555555433 4788899999999999999999999999998876555544433 1
Q ss_pred HHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHh
Q 004369 351 GHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALV 430 (758)
Q Consensus 351 ~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li 430 (758)
.|+-. |...|+.+..-.+...+.... +-....+..-....-..++.+.|..+-+..++.. +.+...+-.-.
T Consensus 271 ~Ya~L-------L~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG 341 (564)
T KOG1174|consen 271 LYAVL-------LGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKG 341 (564)
T ss_pred HHHHH-------HHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhcc
Confidence 12111 111788888877777776532 1122222222333345567777777777776643 22344444445
Q ss_pred hhHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHhc-cccH
Q 004369 431 NMYKKCGRIERASRVFVEMS---TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGAL-AACSN-AGMV 505 (758)
Q Consensus 431 ~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~a~~~-~g~~ 505 (758)
..+...|+.++|.-.|+... .-+..+|..|+..|...|+..+|..+-+...+. +..+..+...+. ..|.. ..--
T Consensus 342 ~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~r 420 (564)
T KOG1174|consen 342 RLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMR 420 (564)
T ss_pred HHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhH
Confidence 56677899999999998755 347899999999999999999999988876654 444566655552 34433 3345
Q ss_pred HHHHHHHHHhhhhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 004369 506 YEALGYFEMMQKEYKIKPV-MDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEPNEVIWSVFIAGCRRHGNMELGFYAAEQL 583 (758)
Q Consensus 506 ~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 583 (758)
++|.+++++.. .+.|+ ....+.+...+.+.|+.+++..++++. ...||....+.|...++..+.+++|...|..+
T Consensus 421 EKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~A 497 (564)
T KOG1174|consen 421 EKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKA 497 (564)
T ss_pred HHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 78888888764 56777 556778889999999999999999998 77789999999999999999999999999999
Q ss_pred hccCCCCchhHHH
Q 004369 584 LKLKPKDCESYAM 596 (758)
Q Consensus 584 ~~~~p~~~~~~~~ 596 (758)
+.++|++..+...
T Consensus 498 Lr~dP~~~~sl~G 510 (564)
T KOG1174|consen 498 LRQDPKSKRTLRG 510 (564)
T ss_pred HhcCccchHHHHH
Confidence 9999998554433
No 58
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.20 E-value=6.9e-09 Score=109.59 Aligned_cols=232 Identities=16% Similarity=0.182 Sum_probs=178.5
Q ss_pred CHHHHHHHHHHHhcccchHHHHHHHHHHHHc-----CC-CChH-HHHhHHhhhHHhcCCHHHHHHHHHhcCC--------
Q 004369 387 DLYTFSSILTICSRLVALEQGEQIHALTLKT-----GF-LSDV-VVGTALVNMYKKCGRIERASRVFVEMST-------- 451 (758)
Q Consensus 387 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-----~~-~~~~-~~~~~Li~~y~~~g~~~~A~~~~~~~~~-------- 451 (758)
-..|...+...|...|+++.|..++...++. |. .|.+ ...+.+...|...+++++|..+|+++..
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 3356677888999999999999999887764 21 2232 2344577889999999999999988651
Q ss_pred CC---hhHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCC-CC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhcC-
Q 004369 452 RT---LISWTSMITGFANHSLSHQALQLFEDMLL-----AGVR-PN-QVTFVGALAACSNAGMVYEALGYFEMMQKEYK- 520 (758)
Q Consensus 452 ~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~-p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~- 520 (758)
.+ ..+++.|..+|.+.|++++|...+++..+ .|.. |. ..-++.+...|...+.+++|..++....+.+.
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~ 357 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD 357 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 12 25788888899999999999988887654 1222 22 23466677789999999999999988776443
Q ss_pred -CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHc---------CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHhc
Q 004369 521 -IKPV----MDHYMCLIDMFVRLGCIEEAFDFIKKM---------DFEPN-EVIWSVFIAGCRRHGNMELGFYAAEQLLK 585 (758)
Q Consensus 521 -~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 585 (758)
..++ ..+++.|...|...|++++|.++++++ +..+. ...++.|...|.+.+++++|.++|++...
T Consensus 358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD 437 (508)
T ss_pred hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 2222 467999999999999999999999987 12232 45688899999999999999998887765
Q ss_pred c----CC---CCchhHHHHHHHhhhCCCchhHHHHHHHhh
Q 004369 586 L----KP---KDCESYAMLLDIFVSAGRWEDVAVVKNLTR 618 (758)
Q Consensus 586 ~----~p---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 618 (758)
+ +| +-..+|..|+..|.+.|++++|.++.+...
T Consensus 438 i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 438 IMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3 34 445678899999999999999999988775
No 59
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.17 E-value=3e-08 Score=97.62 Aligned_cols=287 Identities=13% Similarity=0.046 Sum_probs=190.8
Q ss_pred hCCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHhhcCChHHHHH
Q 004369 152 QNSQPELAIHVFLDMLEAGNYPTNVTLGTALTACSSLESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGSLNSAIK 231 (758)
Q Consensus 152 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~ 231 (758)
-.|++.+|.++..+-.+.+-.| ...|.....+.-+.||.+.+-++...+.+..-.++..++-+........|+++.|+.
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 4688999999888877766443 344556666777888999999998888887556777788888888889999999988
Q ss_pred HHhccCC---CCcchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHHHHHHHHHHHhCCC
Q 004369 232 AFNRIRE---KNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYA 308 (758)
Q Consensus 232 ~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 308 (758)
-.++..+ ++..........|.+.|++.+...++.+|.+.|+--|+..- ++
T Consensus 175 ~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~-----------------~l---------- 227 (400)
T COG3071 175 NVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA-----------------RL---------- 227 (400)
T ss_pred HHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH-----------------HH----------
Confidence 7776654 56778888889999999999999999999998875544311 10
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHccCCC---CCeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCC
Q 004369 309 SNLRVRNSIMYLYLKCGLVDEAQKLFDGMSH---VNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMK 385 (758)
Q Consensus 309 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~ 385 (758)
...+++.+++-....+..+.-...++..+. .++..-.+++.-+.+ .|+.++|.++..+..+.+..
T Consensus 228 -e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~-----------l~~~~~A~~~i~~~Lk~~~D 295 (400)
T COG3071 228 -EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIR-----------LGDHDEAQEIIEDALKRQWD 295 (400)
T ss_pred -HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHH-----------cCChHHHHHHHHHHHHhccC
Confidence 112334444444444444444455555553 334444455555666 77777787777777776666
Q ss_pred CCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcC--CCChhHHHHHHHH
Q 004369 386 PDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMS--TRTLISWTSMITG 463 (758)
Q Consensus 386 p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~ 463 (758)
|+..+ +-.+.+.++.+.-.+..+...+. .+.++..+.+|...|.+.+.+.+|.+.|+... .++..+|+-+..+
T Consensus 296 ~~L~~----~~~~l~~~d~~~l~k~~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~ 370 (400)
T COG3071 296 PRLCR----LIPRLRPGDPEPLIKAAEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADA 370 (400)
T ss_pred hhHHH----HHhhcCCCCchHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHH
Confidence 65222 22344455555544444444332 13344666777777777777777777777544 4566677777777
Q ss_pred HHhcCCHHHHHHHHHHHHHc
Q 004369 464 FANHSLSHQALQLFEDMLLA 483 (758)
Q Consensus 464 ~~~~g~~~~A~~~~~~m~~~ 483 (758)
|.+.|+..+|.+++++....
T Consensus 371 ~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 371 LDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHcCChHHHHHHHHHHHHH
Confidence 77777777777777665543
No 60
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.17 E-value=3.4e-08 Score=94.18 Aligned_cols=319 Identities=14% Similarity=0.094 Sum_probs=175.3
Q ss_pred hCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 004369 253 ENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQK 332 (758)
Q Consensus 253 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 332 (758)
-+.++++|.++|-+|.+. |..|| .+.-+|.+.|-+.|.+|.|++
T Consensus 47 Ls~Q~dKAvdlF~e~l~~----d~~t~--------------------------------e~~ltLGnLfRsRGEvDRAIR 90 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQE----DPETF--------------------------------EAHLTLGNLFRSRGEVDRAIR 90 (389)
T ss_pred hhcCcchHHHHHHHHHhc----Cchhh--------------------------------HHHHHHHHHHHhcchHHHHHH
Confidence 356889999999999873 22232 223455556666666666666
Q ss_pred HHccCCCCCeeechh-------HHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHhcccchH
Q 004369 333 LFDGMSHVNLVTWNA-------MIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALE 405 (758)
Q Consensus 333 ~~~~m~~~~~~~~~~-------li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 405 (758)
+-..+.+....|++- +..-|.. .|-+|.|..+|..+.+.+. --......++..|....+++
T Consensus 91 iHQ~L~~spdlT~~qr~lAl~qL~~Dym~-----------aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~ 158 (389)
T COG2956 91 IHQTLLESPDLTFEQRLLALQQLGRDYMA-----------AGLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWE 158 (389)
T ss_pred HHHHHhcCCCCchHHHHHHHHHHHHHHHH-----------hhhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHH
Confidence 655554422222222 2223333 6777777777777665431 12223344455555555555
Q ss_pred HHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 004369 406 QGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQALQLFEDMLLAGV 485 (758)
Q Consensus 406 ~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 485 (758)
+|..+-....+.+-.+... -+. ..|.-+...+....+.+.|..++.+..+.
T Consensus 159 KAId~A~~L~k~~~q~~~~---eIA------------------------qfyCELAq~~~~~~~~d~A~~~l~kAlqa-- 209 (389)
T COG2956 159 KAIDVAERLVKLGGQTYRV---EIA------------------------QFYCELAQQALASSDVDRARELLKKALQA-- 209 (389)
T ss_pred HHHHHHHHHHHcCCccchh---HHH------------------------HHHHHHHHHHhhhhhHHHHHHHHHHHHhh--
Confidence 5555555444433222110 001 12333444444556666677777766663
Q ss_pred CCCHHH-HHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCCHHHHHHH
Q 004369 486 RPNQVT-FVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEPNEVIWSVF 563 (758)
Q Consensus 486 ~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l 563 (758)
.|+.+- -..+.......|+++.|.+.++.+.+. +..--.++...|..+|...|+.++.+.++.++ ...++...-..+
T Consensus 210 ~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l 288 (389)
T COG2956 210 DKKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELML 288 (389)
T ss_pred CccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHH
Confidence 333222 223334556667777777777776653 22222456666777777777777777777665 334444444444
Q ss_pred HHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHh--hhCCCchhHHHHHHHhhhCCCCCCCceeEEEECCEEEEEe
Q 004369 564 IAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIF--VSAGRWEDVAVVKNLTREEKLSETDDWSWIRIKDKVYSFK 641 (758)
Q Consensus 564 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~ 641 (758)
..--....-.+.|...+.+-+...|.-...|..+---. +..|++.+...+++.|....++..|...--..+-..|.|.
T Consensus 289 ~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~YRC~~CGF~a~~l~ 368 (389)
T COG2956 289 ADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRYRCQNCGFTAHTLY 368 (389)
T ss_pred HHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCceecccCCcceeee
Confidence 44444444456666667777777776444444333223 2346788888888888888888777665555555555553
Q ss_pred cCCCCCCChHH
Q 004369 642 PNDGLHPQSAE 652 (758)
Q Consensus 642 ~~~~~~~~~~~ 652 (758)
+..|.+..
T Consensus 369 ---W~CPsC~~ 376 (389)
T COG2956 369 ---WHCPSCRA 376 (389)
T ss_pred ---eeCCCccc
Confidence 34466543
No 61
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.17 E-value=2.2e-07 Score=98.84 Aligned_cols=452 Identities=14% Similarity=0.076 Sum_probs=272.7
Q ss_pred CCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhc---ccCChHHH-------------------HH----HHHHHHHhCC
Q 004369 153 NSQPELAIHVFLDMLEAGNYPTNVTLGTALTACS---SLESIRLG-------------------KQ----IHAYVVKYQT 206 (758)
Q Consensus 153 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~---~~~~~~~a-------------------~~----~~~~~~~~g~ 206 (758)
.+++++++.-+......+..-+..++..+..++. -.++.++. .. .+.++....+
T Consensus 240 ~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~~~ 319 (799)
T KOG4162|consen 240 LSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEVILLLLIEESLIPRENIEDAILSLMLLLRKLRLKKF 319 (799)
T ss_pred CCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHhhh
Confidence 4555666666666655555555555555444322 22333332 11 1222222345
Q ss_pred CCChhHHHHHHHHHhhcCChHHHHHHHhccCC---CCcchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhh-HHHH
Q 004369 207 EDDTSVGNSLCSLYSTCGSLNSAIKAFNRIRE---KNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFT-LTSI 282 (758)
Q Consensus 207 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~l 282 (758)
..|..+|..|.-+...+|+++.+.+.|++... .....|+.+-..|...|.-..|+.++++-....-.|+..+ +...
T Consensus 320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 67888999999999999999999999998764 3456899999999999999999999988765443354443 3333
Q ss_pred HHHHc-ccCChHHHHHHHHHHHHh--CC--CCchhHHHHHHHHHHhcC-----------CHHHHHHHHccCCCCCeeech
Q 004369 283 SSVCG-TMLSLRVGAQVHSLGIKL--GY--ASNLRVRNSIMYLYLKCG-----------LVDEAQKLFDGMSHVNLVTWN 346 (758)
Q Consensus 283 l~~~~-~~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~li~~~~~~g-----------~~~~A~~~~~~m~~~~~~~~~ 346 (758)
-..|. +.+..+++..+-..++.. +. ......|-.+.-+|...- ...++...+++..+.|..-.+
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~ 479 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPL 479 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCch
Confidence 34443 446667776666666652 11 122333444444443221 123445555554332222222
Q ss_pred hHHH---HHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChH
Q 004369 347 AMIA---GHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDV 423 (758)
Q Consensus 347 ~li~---~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~ 423 (758)
.+.. -|+. .++.+.|++..++....+-.-+...+..+.-.+...+++..|..+.+.....- ..|.
T Consensus 480 ~if~lalq~A~-----------~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~ 547 (799)
T KOG4162|consen 480 VIFYLALQYAE-----------QRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNH 547 (799)
T ss_pred HHHHHHHHHHH-----------HHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhh
Confidence 2222 2333 67778888888888776556666677666666677777888887776655421 1111
Q ss_pred HHHhHHhhhHHhcCCHHHHHHHHHhcC-------------------------------CCCh-hHHHHHHHHHHhcCCHH
Q 004369 424 VVGTALVNMYKKCGRIERASRVFVEMS-------------------------------TRTL-ISWTSMITGFANHSLSH 471 (758)
Q Consensus 424 ~~~~~Li~~y~~~g~~~~A~~~~~~~~-------------------------------~~~~-~~~~~li~~~~~~g~~~ 471 (758)
.....-++.-..-++.++|......+. ..|. .++..+. +... -+.+
T Consensus 548 ~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls-~l~a-~~~~ 625 (799)
T KOG4162|consen 548 VLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLS-SLVA-SQLK 625 (799)
T ss_pred hhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHH-HHHH-hhhh
Confidence 111111111222344444444322221 0011 1111111 1111 0000
Q ss_pred HHHHHHHHHHHcCCCC--CH------HHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHH
Q 004369 472 QALQLFEDMLLAGVRP--NQ------VTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEE 543 (758)
Q Consensus 472 ~A~~~~~~m~~~g~~p--~~------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 543 (758)
.+..-.. |...-+.| +. ..|......+.+.+..++|...+.+..+ ...-....|......+...|+++|
T Consensus 626 ~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~E 702 (799)
T KOG4162|consen 626 SAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEE 702 (799)
T ss_pred hcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHH
Confidence 0000000 11111222 21 2244455567888899999988887754 223345677777888999999999
Q ss_pred HHHHHHHc-CCCCC-HHHHHHHHHHHHHcCChhHHHH--HHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369 544 AFDFIKKM-DFEPN-EVIWSVFIAGCRRHGNMELGFY--AAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTRE 619 (758)
Q Consensus 544 A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 619 (758)
|.+.|... .+.|+ +.+..++...+.+.|+...|.. ++..+++++|.++..|..|+.++-+.|+.++|..-|....+
T Consensus 703 A~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 703 AKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 99999887 78884 6778999999999999888888 99999999999999999999999999999999999998876
Q ss_pred CC
Q 004369 620 EK 621 (758)
Q Consensus 620 ~~ 621 (758)
-.
T Consensus 783 Le 784 (799)
T KOG4162|consen 783 LE 784 (799)
T ss_pred hc
Confidence 43
No 62
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.15 E-value=8.8e-08 Score=91.46 Aligned_cols=246 Identities=11% Similarity=0.143 Sum_probs=187.5
Q ss_pred CCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcC-CCCh--HHHHhHHhhhHHhcCCHHHH
Q 004369 366 HNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTG-FLSD--VVVGTALVNMYKKCGRIERA 442 (758)
Q Consensus 366 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~-~~~~--~~~~~~Li~~y~~~g~~~~A 442 (758)
+++.++|.++|-+|.+.. +-+..+-.++-+.+.+.|.++.|..+|..+.++. ...+ ....-.|..-|.+.|-++.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 788999999999998742 2233445567788899999999999999888753 2222 33455678889999999999
Q ss_pred HHHHHhcCCCCh---hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHhccccHHHHHHHHHHh
Q 004369 443 SRVFVEMSTRTL---ISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQV----TFVGALAACSNAGMVYEALGYFEMM 515 (758)
Q Consensus 443 ~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~ 515 (758)
+++|..+.+.+. .....|+..|-...+|++|++.-+++.+.+-++..+ .|.-+........+++.|...+++.
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 999999886444 456678999999999999999999999876665532 3555555666778899999999988
Q ss_pred hhhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCc
Q 004369 516 QKEYKIKPV-MDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEPN--EVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDC 591 (758)
Q Consensus 516 ~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 591 (758)
.+. .|+ +..--.+.+.+...|+++.|.+.++.. ...|+ ..+...|..+|.+.|+.+++...+.++.+..++.
T Consensus 207 lqa---~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~- 282 (389)
T COG2956 207 LQA---DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA- 282 (389)
T ss_pred Hhh---CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc-
Confidence 652 343 344446778999999999999999988 55565 4568889999999999999999999999988774
Q ss_pred hhHHHHHHHhhhCCCchhHHHHHHH
Q 004369 592 ESYAMLLDIFVSAGRWEDVAVVKNL 616 (758)
Q Consensus 592 ~~~~~l~~~~~~~g~~~~a~~~~~~ 616 (758)
..-..+...-....-.+.|......
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~ 307 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTR 307 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHH
Confidence 4455555555555555555554443
No 63
>PRK12370 invasion protein regulator; Provisional
Probab=99.11 E-value=1.8e-08 Score=111.95 Aligned_cols=244 Identities=11% Similarity=0.013 Sum_probs=179.2
Q ss_pred CChhHHHHHHHHhHhCCCCCCH-HHHHHHHHHHh---------cccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhc
Q 004369 367 NGGTEALSIFSKLNSSGMKPDL-YTFSSILTICS---------RLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKC 436 (758)
Q Consensus 367 g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~---------~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~ 436 (758)
+..++|+.+|++..+. .|+. ..+..+..++. ..++.++|...++.+++.. +.+...+..+...+...
T Consensus 275 ~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~ 351 (553)
T PRK12370 275 YSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIH 351 (553)
T ss_pred HHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHc
Confidence 4567999999998875 5544 34444333332 2345789999999988875 55678888899999999
Q ss_pred CCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccccHHHHHHHH
Q 004369 437 GRIERASRVFVEMST---RTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQV-TFVGALAACSNAGMVYEALGYF 512 (758)
Q Consensus 437 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~ 512 (758)
|++++|...|++..+ .+...|..+...+...|++++|+..+++..+. .|+.. .+..++..+...|++++|...+
T Consensus 352 g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 352 SEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 999999999998663 34568888999999999999999999999984 55532 3333444566789999999999
Q ss_pred HHhhhhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHhccCCC
Q 004369 513 EMMQKEYKIKP-VMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEPNE-VIWSVFIAGCRRHGNMELGFYAAEQLLKLKPK 589 (758)
Q Consensus 513 ~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 589 (758)
+++.+. ..| +...+..+...|...|+.++|...++++ +..|+. ..++.+...+...| +.|...++++++..-.
T Consensus 430 ~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~ 505 (553)
T PRK12370 430 DELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQR 505 (553)
T ss_pred HHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhH
Confidence 988753 234 3556777889999999999999999988 555654 44566666667777 4788888887765433
Q ss_pred CchhHHHHHHHhhhCCCchhHHHHHHHhhhC
Q 004369 590 DCESYAMLLDIFVSAGRWEDVAVVKNLTREE 620 (758)
Q Consensus 590 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 620 (758)
.+.....+..+|+-.|+-+.+..+ +.+.+.
T Consensus 506 ~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 506 IDNNPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred hhcCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 333333477778888888888777 666553
No 64
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=2e-07 Score=93.80 Aligned_cols=184 Identities=11% Similarity=0.074 Sum_probs=138.2
Q ss_pred hHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHH
Q 004369 432 MYKKCGRIERASRVFVEMST---RTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEA 508 (758)
Q Consensus 432 ~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 508 (758)
.+.-+|+.-.|..-|+.... .++..|--+...|.+..+.++-...|.+..+.+ +-|..+|..-.....-.+++++|
T Consensus 335 F~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHH
Confidence 34557888888888887663 233447778888999999999999999988743 22355666666666667889999
Q ss_pred HHHHHHhhhhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhc
Q 004369 509 LGYFEMMQKEYKIKPV-MDHYMCLIDMFVRLGCIEEAFDFIKKM--DFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLK 585 (758)
Q Consensus 509 ~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 585 (758)
..-|++.++ +.|+ +..|-.+.-+..|.+++++++..|++. .+.--+.+|+.....+...++++.|.+.++++++
T Consensus 414 ~aDF~Kai~---L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 414 IADFQKAIS---LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHhh---cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 999988864 4554 566777777888999999999999988 3433567788888999999999999999999999
Q ss_pred cCCC------CchhHHHHHHHhhh-CCCchhHHHHHHHhhh
Q 004369 586 LKPK------DCESYAMLLDIFVS-AGRWEDVAVVKNLTRE 619 (758)
Q Consensus 586 ~~p~------~~~~~~~l~~~~~~-~g~~~~a~~~~~~m~~ 619 (758)
++|. ++..++.-+-+..+ .+++..|.++.++..+
T Consensus 491 LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e 531 (606)
T KOG0547|consen 491 LEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIE 531 (606)
T ss_pred hccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHc
Confidence 9998 66666554333322 2778888888887765
No 65
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.08 E-value=4.1e-08 Score=96.54 Aligned_cols=199 Identities=17% Similarity=0.105 Sum_probs=160.7
Q ss_pred CHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHH
Q 004369 387 DLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMS---TRTLISWTSMITG 463 (758)
Q Consensus 387 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~ 463 (758)
....+..+...+...|+++.|...+..+.+.. +.+...+..+...|...|++++|.+.|++.. ..+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 34556677788888999999999999888764 4457788889999999999999999998865 3456778888999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHH
Q 004369 464 FANHSLSHQALQLFEDMLLAGVRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIE 542 (758)
Q Consensus 464 ~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 542 (758)
+...|++++|++.|++.......|. ...+..+..++...|++++|...++...+. .+.+...+..+...+...|+++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI--DPQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCChHHHHHHHHHHHHcCCHH
Confidence 9999999999999999987533333 446666777889999999999999998763 2334677888999999999999
Q ss_pred HHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCC
Q 004369 543 EAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKP 588 (758)
Q Consensus 543 ~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 588 (758)
+|.+.+++. ...| +...+..+...+...|+.+.|....+.+.+..|
T Consensus 187 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 187 DARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 999999987 3334 566677788888899999999998888766543
No 66
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.07 E-value=1.5e-06 Score=89.82 Aligned_cols=364 Identities=12% Similarity=0.109 Sum_probs=209.1
Q ss_pred hcCChHHHHHHHhccCCCCcchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCC-hhhHHHHHHHHcccCChHHHHHHHH
Q 004369 222 TCGSLNSAIKAFNRIREKNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPN-EFTLTSISSVCGTMLSLRVGAQVHS 300 (758)
Q Consensus 222 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~ 300 (758)
+.+..++|...++.....|..+...-...+.+.|++++|+++|+.+.+++..-- ...-..++.+-+.. .+ +
T Consensus 91 rlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l----~~-~--- 162 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL----QV-Q--- 162 (652)
T ss_pred HcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh----hH-H---
Confidence 567888888888855444444555555677788888888888888877654321 11112222221111 00 0
Q ss_pred HHHHhCCCC--chhHHHHHHHHHHhcCCHHHHHHHHccC--------CCCCee-----ec-----hhHHHHHhhhchhhh
Q 004369 301 LGIKLGYAS--NLRVRNSIMYLYLKCGLVDEAQKLFDGM--------SHVNLV-----TW-----NAMIAGHAQMMDLAK 360 (758)
Q Consensus 301 ~~~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~~~~-----~~-----~~li~~~~~~~~~~~ 360 (758)
.+......| +-..+-.....+...|++.+|+++++.. .+.|.. .- --|.-.+-.
T Consensus 163 ~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~------ 236 (652)
T KOG2376|consen 163 LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQL------ 236 (652)
T ss_pred HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHH------
Confidence 111111122 1112222345567788888888888776 221111 10 111222333
Q ss_pred chhhcCCChhHHHHHHHHhHhCCCCCCHHHHHHH---HHHHhcccchHHH--HHHHH-----------HHHHcCCCChHH
Q 004369 361 DDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSI---LTICSRLVALEQG--EQIHA-----------LTLKTGFLSDVV 424 (758)
Q Consensus 361 ~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l---l~a~~~~~~~~~a--~~i~~-----------~~~~~~~~~~~~ 424 (758)
.|+..+|..++...+... .+|....... |.+.....++..+ ...++ .+....-.....
T Consensus 237 -----~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~ 310 (652)
T KOG2376|consen 237 -----QGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIY 310 (652)
T ss_pred -----hcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 899999999999998864 4444332222 2222222222221 11111 111111111233
Q ss_pred HHhHHhhhHHhcCCHHHHHHHHHhcCCCC-hhHHHHHHHHHH--hcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHH
Q 004369 425 VGTALVNMYKKCGRIERASRVFVEMSTRT-LISWTSMITGFA--NHSLSHQALQLFEDMLLAGVRPN--QVTFVGALAAC 499 (758)
Q Consensus 425 ~~~~Li~~y~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~ 499 (758)
.-+.|+.+|. +..+.+.++-...+..- ...+.+++.... +.....+|.+++...-+. .|. .+.....+.-.
T Consensus 311 ~N~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~ 386 (652)
T KOG2376|consen 311 RNNALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLK 386 (652)
T ss_pred HHHHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHH
Confidence 3345666665 55667777777766433 344455544432 223577888888877664 344 34444555566
Q ss_pred hccccHHHHHHHHH--------HhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc--------CCCCC-HHHHHH
Q 004369 500 SNAGMVYEALGYFE--------MMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM--------DFEPN-EVIWSV 562 (758)
Q Consensus 500 ~~~g~~~~a~~~~~--------~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~-~~~~~~ 562 (758)
...|+++.|.+++. .+.+ .+..| .+...++.+|.+.+..+-|-.++.+. ...+. ..+|.-
T Consensus 387 is~gn~~~A~~il~~~~~~~~ss~~~-~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~ 463 (652)
T KOG2376|consen 387 ISQGNPEVALEILSLFLESWKSSILE-AKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMRE 463 (652)
T ss_pred HhcCCHHHHHHHHHHHhhhhhhhhhh-hccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHH
Confidence 78999999999998 4443 34445 45677889999988766666666554 22222 233444
Q ss_pred HHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHH
Q 004369 563 FIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVV 613 (758)
Q Consensus 563 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 613 (758)
+..--.++|+.++|...++++++.+|+|......++-+|++.. .+.|..+
T Consensus 464 aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d-~eka~~l 513 (652)
T KOG2376|consen 464 AAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARLD-PEKAESL 513 (652)
T ss_pred HhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcC-HHHHHHH
Confidence 4555567899999999999999999999999999999998764 3444444
No 67
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.05 E-value=8.5e-06 Score=85.06 Aligned_cols=476 Identities=12% Similarity=0.114 Sum_probs=255.8
Q ss_pred hhHHHHHHHHhhcCCChHHHHHHHccCCC-----CCcchHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHH
Q 004369 109 FFVMTFLVNVYGKCGNMEEAQKVFDNLPR-----INVVSWTSLISGYVQNSQPELAIHVFLDMLEAGNYPTNVTLGTALT 183 (758)
Q Consensus 109 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 183 (758)
+.+|...+....++|++..-+..|+.... .....|...|.-.-..|-++-++.+|++.++- .| ..-.--+.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P--~~~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--AP--EAREEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CH--HHHHHHHH
Confidence 46777888888999999999999976532 34456999999888999999999999998764 33 34666777
Q ss_pred HhcccCChHHHHHHHHHHHHhC------CCCChhHHHHHHHHHhhcCCh---HHHHHHHhccCC--CCc--chHHHHHHH
Q 004369 184 ACSSLESIRLGKQIHAYVVKYQ------TEDDTSVGNSLCSLYSTCGSL---NSAIKAFNRIRE--KNV--MSWTTVIGA 250 (758)
Q Consensus 184 ~~~~~~~~~~a~~~~~~~~~~g------~~~~~~~~~~Li~~y~~~g~~---~~A~~~f~~~~~--~~~--~~~~~li~~ 250 (758)
.++..+++++|.+.+..++... .+.+...|.-+.+..++.-+. -....+++.+.. +|. ..|++|..-
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADY 257 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHH
Confidence 7888999999999888876432 234555677777776665332 233445555554 333 479999999
Q ss_pred HhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCHHH
Q 004369 251 CGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYAS-NLRVRNSIMYLYLKCGLVDE 329 (758)
Q Consensus 251 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~ 329 (758)
|.+.|.+++|.++|++-...- ....-|+.+.++|+.-.....+..+- .....+..+ +. -+++-
T Consensus 258 YIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~ed~-------------~dl~~ 321 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEEDD-------------VDLEL 321 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChhhh-------------hhHHH
Confidence 999999999999999977642 22333445555554321111111000 000000000 00 01111
Q ss_pred HHHHHccCCC---------------CCeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCC------H
Q 004369 330 AQKLFDGMSH---------------VNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPD------L 388 (758)
Q Consensus 330 A~~~~~~m~~---------------~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~------~ 388 (758)
...-|+.+.+ .++..|..-...+ .|+..+-...|.+..+. +.|- .
T Consensus 322 ~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~-------------e~~~~~~i~tyteAv~~-vdP~ka~Gs~~ 387 (835)
T KOG2047|consen 322 HMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLY-------------EGNAAEQINTYTEAVKT-VDPKKAVGSPG 387 (835)
T ss_pred HHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhh-------------cCChHHHHHHHHHHHHc-cCcccCCCChh
Confidence 1111221111 1112222222111 34444444444444332 1111 1
Q ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCh---HHHHhHHhhhHHhcCCHHHHHHHHHhcC---CC----------
Q 004369 389 YTFSSILTICSRLVALEQGEQIHALTLKTGFLSD---VVVGTALVNMYKKCGRIERASRVFVEMS---TR---------- 452 (758)
Q Consensus 389 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~---~~~~~~Li~~y~~~g~~~~A~~~~~~~~---~~---------- 452 (758)
..+..+..-|-..|+++.|+.+|+...+..++.- ..+|..-.++-.+..+++.|.++.+... .+
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~ 467 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSE 467 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCC
Confidence 1233344444444555555555554444332211 2333333344444444444444444322 00
Q ss_pred --------ChhHHHHHHHHHHh----------------------------------cCCHHHHHHHHHHHHHcCCCCCH-
Q 004369 453 --------TLISWTSMITGFAN----------------------------------HSLSHQALQLFEDMLLAGVRPNQ- 489 (758)
Q Consensus 453 --------~~~~~~~li~~~~~----------------------------------~g~~~~A~~~~~~m~~~g~~p~~- 489 (758)
....|...+.---. +.-++++.++|++-...=--|+.
T Consensus 468 pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~ 547 (835)
T KOG2047|consen 468 PVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVY 547 (835)
T ss_pred cHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHH
Confidence 11223333333333 33345555555443332122332
Q ss_pred HHHHHHHHHHhc---cccHHHHHHHHHHhhhhcCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHc--CCCCC--HHHH
Q 004369 490 VTFVGALAACSN---AGMVYEALGYFEMMQKEYKIKPVMD--HYMCLIDMFVRLGCIEEAFDFIKKM--DFEPN--EVIW 560 (758)
Q Consensus 490 ~t~~~ll~a~~~---~g~~~~a~~~~~~~~~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~--~~~~ 560 (758)
..|+..|.-+.+ ...++.|+.+|++..+ +.+|.-. .|-.....=-+-|....|+.+++++ ++++. ...|
T Consensus 548 diW~tYLtkfi~rygg~klEraRdLFEqaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~my 625 (835)
T KOG2047|consen 548 DIWNTYLTKFIKRYGGTKLERARDLFEQALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMY 625 (835)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 234444433222 2357778888887776 6655422 1222222223456777777787777 44442 2356
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHhccCCCCch--hHHHHHHHhhhCCCchhHHHHHHHhhhC
Q 004369 561 SVFIAGCRRHGNMELGFYAAEQLLKLKPKDCE--SYAMLLDIFVSAGRWEDVAVVKNLTREE 620 (758)
Q Consensus 561 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~--~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 620 (758)
|..|.--...=-+..-..+++++++.-|++-. .....+++=.+.|..+.|+.++..-.+-
T Consensus 626 ni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~ 687 (835)
T KOG2047|consen 626 NIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI 687 (835)
T ss_pred HHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc
Confidence 66665444333344556788888887776433 3344577788899999999988876553
No 68
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.05 E-value=6.5e-07 Score=86.41 Aligned_cols=442 Identities=13% Similarity=0.077 Sum_probs=210.9
Q ss_pred hhcCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChHHHHHHHccCCC---CCcchHHHHHHHHHhCCCchHHH
Q 004369 84 CVNRKSLSNAEIIHAHIVKTGSHQDFFVMTFLVNVYGKCGNMEEAQKVFDNLPR---INVVSWTSLISGYVQNSQPELAI 160 (758)
Q Consensus 84 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 160 (758)
+....++..|..+++.-...+-+....+..-+...|.+.|++++|..++..+.+ ++...|--|.-.+.-.|.+.+|.
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~ 111 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAK 111 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHH
Confidence 334455666666655544322111112222233445566667766666655432 23334444444444455666665
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHhhcCChHHHHHHHhccCC--
Q 004369 161 HVFLDMLEAGNYPTNVTLGTALTACSSLESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGSLNSAIKAFNRIRE-- 238 (758)
Q Consensus 161 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~-- 238 (758)
.+-....+ ++..-..++...-+.++-+.-..+|+.+... ..---+|..+.--.-.+.+|..++.++..
T Consensus 112 ~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn 181 (557)
T KOG3785|consen 112 SIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDN 181 (557)
T ss_pred HHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 55443321 2222223333344555555555555554321 11222333333333467778888877765
Q ss_pred CCcchHHHHH-HHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHc--ccCChHHHHHHHHHHHHhCCCCchhHHH
Q 004369 239 KNVMSWTTVI-GACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCG--TMLSLRVGAQVHSLGIKLGYASNLRVRN 315 (758)
Q Consensus 239 ~~~~~~~~li-~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 315 (758)
|+-...|.-+ -.|.+..-++-+.+++.--++. -||+ |+..=+.+|. +.=.-..+++-...+...+-.. -
T Consensus 182 ~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdS-tiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~-----~ 253 (557)
T KOG3785|consen 182 PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDS-TIAKNLKACNLFRLINGRTAEDEKKELADNIDQE-----Y 253 (557)
T ss_pred hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCc-HHHHHHHHHHHhhhhccchhHHHHHHHHhccccc-----c
Confidence 3444444333 3566677777777777666654 2443 2333333332 2111122222222222222100 0
Q ss_pred HHHHHHHhc-----CCHHHHHHHHccCCCCCeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCHHH
Q 004369 316 SIMYLYLKC-----GLVDEAQKLFDGMSHVNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYT 390 (758)
Q Consensus 316 ~li~~~~~~-----g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t 390 (758)
..+.-.++. ..-+.|..++-.+.+.=+..--.++--|.+ +++..+|..+.+++.- ..|-...
T Consensus 254 ~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~-----------q~dVqeA~~L~Kdl~P--ttP~Eyi 320 (557)
T KOG3785|consen 254 PFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLN-----------QNDVQEAISLCKDLDP--TTPYEYI 320 (557)
T ss_pred hhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecc-----------cccHHHHHHHHhhcCC--CChHHHH
Confidence 111111221 112334444333222111111223333444 6666666666655421 1222222
Q ss_pred HHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCCC----C-hhHHHHHHHHHH
Q 004369 391 FSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMSTR----T-LISWTSMITGFA 465 (758)
Q Consensus 391 ~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~----~-~~~~~~li~~~~ 465 (758)
...+.. .++..-......+.-|.+.|+-.... | +.--.+|.+.+.
T Consensus 321 lKgvv~------------------------------aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fF 370 (557)
T KOG3785|consen 321 LKGVVF------------------------------AALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFF 370 (557)
T ss_pred HHHHHH------------------------------HHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHH
Confidence 222111 11111112222344455555443321 1 122344555555
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHH-HHHHHHHHcCCHHHH
Q 004369 466 NHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYM-CLIDMFVRLGCIEEA 544 (758)
Q Consensus 466 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-~li~~~~~~g~~~~A 544 (758)
-..++++.+-.++....- +..|..--..+..|.+..|++.+|.++|-.+.. ..+ .+..+|. .|...|.++++.+-|
T Consensus 371 L~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~~is~-~~i-kn~~~Y~s~LArCyi~nkkP~lA 447 (557)
T KOG3785|consen 371 LSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAEELFIRISG-PEI-KNKILYKSMLARCYIRNKKPQLA 447 (557)
T ss_pred HHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHHhhhcC-hhh-hhhHHHHHHHHHHHHhcCCchHH
Confidence 556666666666666554 233333333456677778888888888876643 122 2334443 456778888888888
Q ss_pred HHHHHHcCCCCCHHHHHH-HHHHHHHcCChhHHHHHHHHHhccCCC
Q 004369 545 FDFIKKMDFEPNEVIWSV-FIAGCRRHGNMELGFYAAEQLLKLKPK 589 (758)
Q Consensus 545 ~~~~~~m~~~p~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~~~p~ 589 (758)
++++-++.-..+..+... +..-|.+.+.+=-|-++|..+-.++|.
T Consensus 448 W~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 448 WDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred HHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 888887754445544433 345677888777777788777777775
No 69
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.05 E-value=3.4e-08 Score=100.35 Aligned_cols=211 Identities=14% Similarity=0.098 Sum_probs=152.4
Q ss_pred cchHHHHHHHHHHHHcC-CCCh--HHHHhHHhhhHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCCHHHHHH
Q 004369 402 VALEQGEQIHALTLKTG-FLSD--VVVGTALVNMYKKCGRIERASRVFVEMS---TRTLISWTSMITGFANHSLSHQALQ 475 (758)
Q Consensus 402 ~~~~~a~~i~~~~~~~~-~~~~--~~~~~~Li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~ 475 (758)
+..+.+..-+..++... ..|+ ...+..+...|.+.|+.++|...|++.. ..+...|+.+...+...|++++|++
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 34455566666666432 2222 4567788888999999999999998865 3467899999999999999999999
Q ss_pred HHHHHHHcCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc--C
Q 004369 476 LFEDMLLAGVRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM--D 552 (758)
Q Consensus 476 ~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~ 552 (758)
.|++..+ +.|+ ..++..+..++...|++++|.+.|+...+. .|+..........+...++.++|.+.+++. .
T Consensus 120 ~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 9999998 5666 567788888889999999999999998763 454322222223345678899999999765 3
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHh-------ccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhhCC
Q 004369 553 FEPNEVIWSVFIAGCRRHGNMELGFYAAEQLL-------KLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREEK 621 (758)
Q Consensus 553 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 621 (758)
..|+...| .......|+...+ ..++.+. ++.|..+..|..|+.+|.+.|++++|...++...+.+
T Consensus 195 ~~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 195 LDKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred CCccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 33333222 2233345666544 2444443 4456677899999999999999999999999988643
No 70
>PRK12370 invasion protein regulator; Provisional
Probab=99.05 E-value=2.9e-08 Score=110.31 Aligned_cols=210 Identities=14% Similarity=0.037 Sum_probs=163.0
Q ss_pred cchHHHHHHHHHHHHcCCCChHHHHhHHhhhHH---------hcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCC
Q 004369 402 VALEQGEQIHALTLKTGFLSDVVVGTALVNMYK---------KCGRIERASRVFVEMST---RTLISWTSMITGFANHSL 469 (758)
Q Consensus 402 ~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~---------~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 469 (758)
+++++|.+.++..++.. +.+...+..+...|. ..+++++|...+++..+ .+...|..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 34578888888888753 334556666655443 23458999999998763 366788889889999999
Q ss_pred HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCH-HHHHHHHHHHHHcCCHHHHHHH
Q 004369 470 SHQALQLFEDMLLAGVRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVM-DHYMCLIDMFVRLGCIEEAFDF 547 (758)
Q Consensus 470 ~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~ 547 (758)
+++|+..|++..+. .|+ ...+..+..++...|++++|...++.+.+ +.|+. ..+..+...+...|++++|.+.
T Consensus 354 ~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 354 YIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 99999999999984 566 55677788889999999999999999976 34542 2333445567778999999999
Q ss_pred HHHc--CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369 548 IKKM--DFEPN-EVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTRE 619 (758)
Q Consensus 548 ~~~m--~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 619 (758)
+++. ...|+ ...+..+...+...|+.++|...++++....|.+......|+..|...| ++|...++.+.+
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 9887 22454 4457778888889999999999999998888888888888888888888 477777777655
No 71
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.04 E-value=6.2e-08 Score=102.48 Aligned_cols=162 Identities=15% Similarity=0.117 Sum_probs=117.5
Q ss_pred HHHhHHhhhHHhcCCHHHHHHHHHhcC----------CCChh-HHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCC-
Q 004369 424 VVGTALVNMYKKCGRIERASRVFVEMS----------TRTLI-SWTSMITGFANHSLSHQALQLFEDMLLA---GVRPN- 488 (758)
Q Consensus 424 ~~~~~Li~~y~~~g~~~~A~~~~~~~~----------~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~- 488 (758)
.+++.|...|.+.|++++|...+++.. .+.+. -++.++..+...+++++|..++++..+. -+.++
T Consensus 284 ~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~ 363 (508)
T KOG1840|consen 284 ATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDN 363 (508)
T ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccc
Confidence 345555666677777666666555432 12222 3566777788888888888888876542 13333
Q ss_pred ---HHHHHHHHHHHhccccHHHHHHHHHHhhhhc-----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHc--------
Q 004369 489 ---QVTFVGALAACSNAGMVYEALGYFEMMQKEY-----KIKPV-MDHYMCLIDMFVRLGCIEEAFDFIKKM-------- 551 (758)
Q Consensus 489 ---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-------- 551 (758)
.-+++.+...|.+.|++++|.++|+++.... +..+. ...++.|...|.+.++.++|.++|.+.
T Consensus 364 ~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g 443 (508)
T KOG1840|consen 364 VNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCG 443 (508)
T ss_pred hHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhC
Confidence 3578889999999999999999999887632 11222 456788999999999999999888876
Q ss_pred CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHhc
Q 004369 552 DFEPN-EVIWSVFIAGCRRHGNMELGFYAAEQLLK 585 (758)
Q Consensus 552 ~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 585 (758)
+..|+ ..+|..|...|...|++|.|+++.++++.
T Consensus 444 ~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 444 PDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred CCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 33454 45699999999999999999999988874
No 72
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.02 E-value=2.2e-05 Score=85.85 Aligned_cols=157 Identities=16% Similarity=0.242 Sum_probs=123.5
Q ss_pred CHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhh
Q 004369 438 RIERASRVFVEMSTRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQK 517 (758)
Q Consensus 438 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 517 (758)
.++.|.++-++.. .+..|+.+..+-.+.|...+|++-|-+. -|...|.-++.++++.|.+++-.+++..+++
T Consensus 1090 ~ldRA~efAe~~n--~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRk 1161 (1666)
T KOG0985|consen 1090 SLDRAYEFAERCN--EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARK 1161 (1666)
T ss_pred hHHHHHHHHHhhC--ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 3444444333333 3357999999999999999999887542 3577899999999999999999999988877
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHH
Q 004369 518 EYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKMDFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAML 597 (758)
Q Consensus 518 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 597 (758)
+ .-+|.++ +.||-+|++.+++.|-++++. -||..-...+.+-|...|.++.|.-++... +.|..|
T Consensus 1162 k-~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v--------SN~a~L 1226 (1666)
T KOG0985|consen 1162 K-VREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSNV--------SNFAKL 1226 (1666)
T ss_pred h-hcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHHh--------hhHHHH
Confidence 4 6677655 578999999999999888875 378878889999999999999998887654 677888
Q ss_pred HHHhhhCCCchhHHHHHHHh
Q 004369 598 LDIFVSAGRWEDVAVVKNLT 617 (758)
Q Consensus 598 ~~~~~~~g~~~~a~~~~~~m 617 (758)
+..+...|.+..|...-++.
T Consensus 1227 a~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1227 ASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred HHHHHHHHHHHHHHHHhhhc
Confidence 88888888888776654443
No 73
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.00 E-value=1.4e-06 Score=91.49 Aligned_cols=197 Identities=13% Similarity=0.091 Sum_probs=86.1
Q ss_pred CCCCCchhHHHHHHHHHHHcCCCCCcch-HHHHHHHh-------------hcCCCcHHHHHHHHHHHH-------h-CCC
Q 004369 49 GNSEPVRSLGFQEALSVLTEGPKVQTSS-YVSLLQEC-------------VNRKSLSNAEIIHAHIVK-------T-GSH 106 (758)
Q Consensus 49 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~-~~~ll~~~-------------~~~~~~~~a~~~~~~~~~-------~-g~~ 106 (758)
+...|+++.|..++..+ .. .|+... |..+.... +..|++.+++.+|+-+.- . |-.
T Consensus 454 aid~~df~ra~afles~-~~--~~da~amw~~laelale~~nl~iaercfaai~dvak~r~lhd~~eiadeas~~~ggdg 530 (1636)
T KOG3616|consen 454 AIDDGDFDRATAFLESL-EM--GPDAEAMWIRLAELALEAGNLFIAERCFAAIGDVAKARFLHDILEIADEASIEIGGDG 530 (1636)
T ss_pred ccccCchHHHHHHHHhh-cc--CccHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhCCCC
Confidence 34578888888777654 22 344433 44443333 334455555555543321 1 112
Q ss_pred CchhHHHHHHHHhhcCCChHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhc
Q 004369 107 QDFFVMTFLVNVYGKCGNMEEAQKVFDNLPRINVVSWTSLISGYVQNSQPELAIHVFLDMLEAGNYPTNVTLGTALTACS 186 (758)
Q Consensus 107 ~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 186 (758)
.+.+-..+++.++. .++.+|..+|-+-. + -..-|..|....++++|+.+-+.. |.+.-...-.+.++++.
T Consensus 531 t~fykvra~lail~--kkfk~ae~ifleqn--~---te~aigmy~~lhkwde~i~lae~~---~~p~~eklk~sy~q~l~ 600 (1636)
T KOG3616|consen 531 TDFYKVRAMLAILE--KKFKEAEMIFLEQN--A---TEEAIGMYQELHKWDEAIALAEAK---GHPALEKLKRSYLQALM 600 (1636)
T ss_pred chHHHHHHHHHHHH--hhhhHHHHHHHhcc--c---HHHHHHHHHHHHhHHHHHHHHHhc---CChHHHHHHHHHHHHHH
Confidence 23333344444433 24566666653311 1 123344555555666666554321 11111111122233333
Q ss_pred ccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHhhcCChHHHHHHHhccC--CCCcchHHHHHHHHhhCCChhhHHHHH
Q 004369 187 SLESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGSLNSAIKAFNRIR--EKNVMSWTTVIGACGENGEAVQGLRFF 264 (758)
Q Consensus 187 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~ 264 (758)
..|+-+.|-++ ..+..-.-+-|..|.+.|....|.+.-..=. ..|......+..++.+..-+++|=++|
T Consensus 601 dt~qd~ka~el---------k~sdgd~laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlf 671 (1636)
T KOG3616|consen 601 DTGQDEKAAEL---------KESDGDGLAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLF 671 (1636)
T ss_pred hcCchhhhhhh---------ccccCccHHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHH
Confidence 33433333222 1111112334566666666666655432211 133334444444455555555555555
Q ss_pred HHH
Q 004369 265 SKM 267 (758)
Q Consensus 265 ~~m 267 (758)
+++
T Consensus 672 eki 674 (1636)
T KOG3616|consen 672 EKI 674 (1636)
T ss_pred HHh
Confidence 554
No 74
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.98 E-value=5e-06 Score=88.83 Aligned_cols=439 Identities=13% Similarity=0.089 Sum_probs=239.5
Q ss_pred CCCchhHHHHHHHHhhcCCChHHHHHHHccCCC---CCcchHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhh-HHH
Q 004369 105 SHQDFFVMTFLVNVYGKCGNMEEAQKVFDNLPR---INVVSWTSLISGYVQNSQPELAIHVFLDMLEAGNYPTNVT-LGT 180 (758)
Q Consensus 105 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ 180 (758)
+.-|..+|..|.-++.++|+++.+.+.|++... .....|+.+-..|...|.-..|+.+++.-....-.|+..+ +..
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 445667777777777778888888887776542 2334577777777778887788877776554332343333 333
Q ss_pred HHHHhc-ccCChHHHHHHHHHHHHhC--C--CCChhHHHHHHHHHhhcCChHHHHHHHhccCCCCcchHHHHHHHHhhCC
Q 004369 181 ALTACS-SLESIRLGKQIHAYVVKYQ--T--EDDTSVGNSLCSLYSTCGSLNSAIKAFNRIREKNVMSWTTVIGACGENG 255 (758)
Q Consensus 181 ll~~~~-~~~~~~~a~~~~~~~~~~g--~--~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g 255 (758)
.-+.|. +.+..+++..+-..++... . ...+..+-.+.-+|...- ....++.- +..
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A--------------~~a~~~se------R~~ 458 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQA--------------RQANLKSE------RDA 458 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHh--------------hcCCChHH------HHH
Confidence 333333 3355555555555554411 0 011112222222221110 00000000 011
Q ss_pred ChhhHHHHHHHHHHCC-CCCChhhHHHHHHHHcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 004369 256 EAVQGLRFFSKMLSEG-IQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLF 334 (758)
Q Consensus 256 ~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 334 (758)
...++++.+++..+.+ -.|+..-|.++ -++..++++.|.+...+..+.+-..+...|.-|.-.+...+++.+|+.+.
T Consensus 459 ~h~kslqale~av~~d~~dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vv 536 (799)
T KOG4162|consen 459 LHKKSLQALEEAVQFDPTDPLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVV 536 (799)
T ss_pred HHHHHHHHHHHHHhcCCCCchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 2345556666655432 23443333333 23445666666666666666655666666666666666667777777666
Q ss_pred ccCCCCCeeechhH---HHHHhhhchhhhchhhcCCChhHHHHHHHHhHhC--CCCCCHHHHHHHHHHHhcccchHHHHH
Q 004369 335 DGMSHVNLVTWNAM---IAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSS--GMKPDLYTFSSILTICSRLVALEQGEQ 409 (758)
Q Consensus 335 ~~m~~~~~~~~~~l---i~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~ll~a~~~~~~~~~a~~ 409 (758)
+...+.-...++.| +..-.. -++.++++.+...+..- ...+-..+ ++-....+
T Consensus 537 d~al~E~~~N~~l~~~~~~i~~~-----------~~~~e~~l~t~~~~L~~we~~~~~q~~-----------~~~g~~~~ 594 (799)
T KOG4162|consen 537 DAALEEFGDNHVLMDGKIHIELT-----------FNDREEALDTCIHKLALWEAEYGVQQT-----------LDEGKLLR 594 (799)
T ss_pred HHHHHHhhhhhhhchhhhhhhhh-----------cccHHHHHHHHHHHHHHHHhhhhHhhh-----------hhhhhhhh
Confidence 55432111111111 111111 45556666665555431 00000000 00000001
Q ss_pred HHHHHHH--cCCCChHHHHhHHhhhHH---hcCCHHHHHHHHHhcCCCC------hhHHHHHHHHHHhcCCHHHHHHHHH
Q 004369 410 IHALTLK--TGFLSDVVVGTALVNMYK---KCGRIERASRVFVEMSTRT------LISWTSMITGFANHSLSHQALQLFE 478 (758)
Q Consensus 410 i~~~~~~--~~~~~~~~~~~~Li~~y~---~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~ 478 (758)
....+.- ........++..+..... +.-..+.....+...+.++ ...|......+.+.++.++|...+.
T Consensus 595 lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~ 674 (799)
T KOG4162|consen 595 LKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLL 674 (799)
T ss_pred hhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 1000000 000111122222211111 1111111112222222232 2357777788889999999998888
Q ss_pred HHHHcCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCC-HHHHHHHHHHHHHcCCHHHHHH--HHHHc-CC
Q 004369 479 DMLLAGVRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPV-MDHYMCLIDMFVRLGCIEEAFD--FIKKM-DF 553 (758)
Q Consensus 479 ~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~--~~~~m-~~ 553 (758)
+.... .|- ...|......+...|..++|.+.|.... -+.|+ +....++..++.+.|+..-|.+ ++..+ .+
T Consensus 675 Ea~~~--~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~ 749 (799)
T KOG4162|consen 675 EASKI--DPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRL 749 (799)
T ss_pred HHHhc--chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh
Confidence 87663 343 4555555567778899999999998774 46676 6778899999999998777777 88887 77
Q ss_pred CC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCch
Q 004369 554 EP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCE 592 (758)
Q Consensus 554 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 592 (758)
.| +...|-.|...+.+.|+.+.|-..|.-++++++.+|.
T Consensus 750 dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 750 DPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred CCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 88 7889999999999999999999999999999887664
No 75
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.97 E-value=1.7e-07 Score=95.24 Aligned_cols=227 Identities=11% Similarity=-0.020 Sum_probs=162.2
Q ss_pred CCChhHHHHHHHHhHhCC-CCCC--HHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHH
Q 004369 366 HNGGTEALSIFSKLNSSG-MKPD--LYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERA 442 (758)
Q Consensus 366 ~g~~~~A~~l~~~m~~~g-~~p~--~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A 442 (758)
.+..+.++..+.++.... ..|+ ...|......+...|+.+.|...+...++.. +.+...|+.+...|...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 566788888888888642 2332 2456666677889999999999999998864 45688999999999999999999
Q ss_pred HHHHHhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhc
Q 004369 443 SRVFVEMST---RTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEY 519 (758)
Q Consensus 443 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 519 (758)
...|++..+ .+...|..+...+...|++++|++.|++..+. .|+..........+...++.++|...|.....
T Consensus 118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~-- 193 (296)
T PRK11189 118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE-- 193 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--
Confidence 999998763 35678888999999999999999999999884 56543222222234456789999999977654
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHH--HHHHHHHc-C----CCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCC-
Q 004369 520 KIKPVMDHYMCLIDMFVRLGCIEE--AFDFIKKM-D----FEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKD- 590 (758)
Q Consensus 520 ~~~p~~~~~~~li~~~~~~g~~~~--A~~~~~~m-~----~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~- 590 (758)
...|+...+ .++.. ..|++.+ +.+.+.+. . ..| ....|..+...+...|++++|...++++++.+|.|
T Consensus 194 ~~~~~~~~~-~~~~~--~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~ 270 (296)
T PRK11189 194 KLDKEQWGW-NIVEF--YLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNF 270 (296)
T ss_pred hCCccccHH-HHHHH--HccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchH
Confidence 334443322 33333 3454433 33333322 1 122 23579999999999999999999999999999754
Q ss_pred chhHHHHHHH
Q 004369 591 CESYAMLLDI 600 (758)
Q Consensus 591 ~~~~~~l~~~ 600 (758)
.++-..++..
T Consensus 271 ~e~~~~~~e~ 280 (296)
T PRK11189 271 VEHRYALLEL 280 (296)
T ss_pred HHHHHHHHHH
Confidence 3333334433
No 76
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.97 E-value=2.4e-08 Score=95.08 Aligned_cols=224 Identities=13% Similarity=0.054 Sum_probs=185.5
Q ss_pred HHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHhcC
Q 004369 392 SSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMST--R-TLISWTSMITGFANHS 468 (758)
Q Consensus 392 ~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g 468 (758)
+.+-.+|.++|.+.+|+..+....+.. |-+.+|-.|-..|.+..+.+.|+.+|.+-.+ | |+....-+...+...+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH
Confidence 456778889999999999888777763 4556777788899999999999999988763 3 4444556777888889
Q ss_pred CHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004369 469 LSHQALQLFEDMLLAGVRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDF 547 (758)
Q Consensus 469 ~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 547 (758)
+.++|.++|++..+. .|+ ......+...|.-.++++-|..++.++.. .|+ .+.+.|+.+.-.+.-.+++|-++.-
T Consensus 305 ~~~~a~~lYk~vlk~--~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLq-mG~-~speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKL--HPINVEAIACIAVGYFYDNNPEMALRYYRRILQ-MGA-QSPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred hHHHHHHHHHHHHhc--CCccceeeeeeeeccccCCChHHHHHHHHHHHH-hcC-CChHHHhhHHHHHHhhcchhhhHHH
Confidence 999999999999884 443 44555566677888999999999999987 466 4568888888888899999999999
Q ss_pred HHHc---CCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhhCC
Q 004369 548 IKKM---DFEPN--EVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREEK 621 (758)
Q Consensus 548 ~~~m---~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 621 (758)
|.+. ...|+ ..+|-.|.......||+..|.+.++-.+..+|++.+.++.|+-.-.+.|++++|+.+++..+...
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 9887 23343 56799999999999999999999999999999999999999999999999999999999887643
No 77
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=8.5e-07 Score=91.19 Aligned_cols=276 Identities=16% Similarity=0.095 Sum_probs=157.2
Q ss_pred CcchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 004369 240 NVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMY 319 (758)
Q Consensus 240 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 319 (758)
|+...-.-..-+...+++.+.+++++...+.. ++....+..=|.++-..|+...-..+=..+++. ++....+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHH
Confidence 44444444555666777777777777776542 233333333344445555544433333333333 3556677777777
Q ss_pred HHHhcCCHHHHHHHHccCCCCCe---eechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhC--CC-CCCHHHHHH
Q 004369 320 LYLKCGLVDEAQKLFDGMSHVNL---VTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSS--GM-KPDLYTFSS 393 (758)
Q Consensus 320 ~~~~~g~~~~A~~~~~~m~~~~~---~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~--g~-~p~~~t~~~ 393 (758)
-|.-.|+.++|++.|.+...-|. ..|-.....|+- .|..++|+..+...-+. |. .|. --
T Consensus 321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~-----------e~EhdQAmaaY~tAarl~~G~hlP~----LY 385 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAG-----------EGEHDQAMAAYFTAARLMPGCHLPS----LY 385 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhh-----------cchHHHHHHHHHHHHHhccCCcchH----HH
Confidence 78778888888888877654332 457777777777 77778887777665442 21 111 11
Q ss_pred HHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHH
Q 004369 394 ILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQA 473 (758)
Q Consensus 394 ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 473 (758)
+---|.+.++.+.|.+.+..+.... |.|+.+.+-+.-+.- ..+.+.+|
T Consensus 386 lgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay-------------------------------~~~~y~~A 433 (611)
T KOG1173|consen 386 LGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAY-------------------------------TYEEYPEA 433 (611)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheee-------------------------------hHhhhHHH
Confidence 1122334445555555554444331 334444444444444 44445555
Q ss_pred HHHHHHHHHc----C-CC-CCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004369 474 LQLFEDMLLA----G-VR-PNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDF 547 (758)
Q Consensus 474 ~~~~~~m~~~----g-~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 547 (758)
..+|+..+.. + -+ --..+++.|..+|.+.+.+++|+..|++... -.+.+..++.++.-.|...|+++.|.+.
T Consensus 434 ~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~--l~~k~~~~~asig~iy~llgnld~Aid~ 511 (611)
T KOG1173|consen 434 LKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL--LSPKDASTHASIGYIYHLLGNLDKAIDH 511 (611)
T ss_pred HHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH--cCCCchhHHHHHHHHHHHhcChHHHHHH
Confidence 5555444310 0 01 1244567777777777777777777777765 3445566777777777777777777777
Q ss_pred HHHc-CCCCCHHHHHHHHHH
Q 004369 548 IKKM-DFEPNEVIWSVFIAG 566 (758)
Q Consensus 548 ~~~m-~~~p~~~~~~~ll~~ 566 (758)
|.+. .++||..+-..++..
T Consensus 512 fhKaL~l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 512 FHKALALKPDNIFISELLKL 531 (611)
T ss_pred HHHHHhcCCccHHHHHHHHH
Confidence 7776 667766555555553
No 78
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.95 E-value=1.2e-05 Score=77.93 Aligned_cols=190 Identities=14% Similarity=0.120 Sum_probs=128.9
Q ss_pred HHhhhHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCC-------HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHH
Q 004369 428 ALVNMYKKCGRIERASRVFVEMSTRTLISWTSMITGFANHSL-------SHQALQLFEDMLLAGVRPNQV-TFVGALAAC 499 (758)
Q Consensus 428 ~Li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~ 499 (758)
.|+--|.+.+++++|..+.+++....+.-|-.-.-.++..|+ ..-|.+.|+-.-+++..-|.+ --.++.+++
T Consensus 290 NL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~f 369 (557)
T KOG3785|consen 290 NLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYF 369 (557)
T ss_pred hheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHH
Confidence 466678899999999999998876665544333333444443 455666665555555444422 223344445
Q ss_pred hccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCC-CCHHHHHHHHHHH-HHcCChhHH
Q 004369 500 SNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFE-PNEVIWSVFIAGC-RRHGNMELG 576 (758)
Q Consensus 500 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~-~~~g~~~~a 576 (758)
.-..++++.+-+++.+.. +=...|...|| +..+++..|.+.+|+++|-+. +.+ .|..+|.+++.-| .+.|..+.|
T Consensus 370 FL~~qFddVl~YlnSi~s-YF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lA 447 (557)
T KOG3785|consen 370 FLSFQFDDVLTYLNSIES-YFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLA 447 (557)
T ss_pred HHHHHHHHHHHHHHHHHH-HhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHH
Confidence 556678999999999876 45555555554 789999999999999999887 322 3777887776655 556777777
Q ss_pred HHHHHHHhccC-CCCc-hhHHHHHHHhhhCCCchhHHHHHHHhhhCCC
Q 004369 577 FYAAEQLLKLK-PKDC-ESYAMLLDIFVSAGRWEDVAVVKNLTREEKL 622 (758)
Q Consensus 577 ~~~~~~~~~~~-p~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 622 (758)
..++ ++.+ |.+. .....+++-|.+++.+--|.+.|..+...+.
T Consensus 448 W~~~---lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 448 WDMM---LKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP 492 (557)
T ss_pred HHHH---HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC
Confidence 6654 4443 4332 3445668889999999999999998876443
No 79
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.93 E-value=7.4e-05 Score=81.93 Aligned_cols=228 Identities=14% Similarity=0.175 Sum_probs=143.8
Q ss_pred HHHhCCCCchhHHHHHHHHhhcCCChHHHHHHHccCCC--CCcchHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhh
Q 004369 100 IVKTGSHQDFFVMTFLVNVYGKCGNMEEAQKVFDNLPR--INVVSWTSLISGYVQNSQPELAIHVFLDMLEAGNYPTNVT 177 (758)
Q Consensus 100 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 177 (758)
..+.|..||... ++....+ -.++.+.+....+++ +...-.+.+...+...+....+..++-...+. ..|+...
T Consensus 504 ~kKvGyTPdymf---lLq~l~r-~sPD~~~qFa~~l~Q~~~~~~die~I~DlFme~N~iQq~TSFLLdaLK~-~~Pd~g~ 578 (1666)
T KOG0985|consen 504 AKKVGYTPDYMF---LLQQLKR-SSPDQALQFAMMLVQDEEPLADIEQIVDLFMELNLIQQCTSFLLDALKL-NSPDEGH 578 (1666)
T ss_pred HHHcCCCccHHH---HHHHHHc-cChhHHHHHHHHhhccCCCcccHHHHHHHHHHHHhhhhhHHHHHHHhcC-CChhhhh
Confidence 345677787433 3444444 567777777777764 33445677777777777777777776666543 4555544
Q ss_pred HHHHHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHhhcCChHHHHHHHhccCC-CCcchHHHH-----HHHH
Q 004369 178 LGTALTACSSLESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGSLNSAIKAFNRIRE-KNVMSWTTV-----IGAC 251 (758)
Q Consensus 178 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~-~~~~~~~~l-----i~~~ 251 (758)
..+-+---...+ |-++-+.+.-.+. .+.+-+..+...+.+.|-+..|++.+..+.. +-++..+.+ +-+|
T Consensus 579 LQTrLLE~NL~~----aPqVADAILgN~m-FtHyDra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~y 653 (1666)
T KOG0985|consen 579 LQTRLLEMNLVH----APQVADAILGNDM-FTHYDRAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNY 653 (1666)
T ss_pred HHHHHHHHHhcc----chHHHHHHHhccc-cccccHHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHH
Confidence 433222111122 2222233332222 1222366777889999999999999988765 111221111 2345
Q ss_pred hhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHHHHHHHHHHHh-----------CCCCchhHHHHHHHH
Q 004369 252 GENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKL-----------GYASNLRVRNSIMYL 320 (758)
Q Consensus 252 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----------g~~~~~~~~~~li~~ 320 (758)
.-.-.++++++.++.|...+++.|..+...+..-|...-..+.-.++|+..... ++..|..+.-..|.+
T Consensus 654 Fg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqA 733 (1666)
T KOG0985|consen 654 FGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQA 733 (1666)
T ss_pred HHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHH
Confidence 556678999999999999999888887777766666555555555555543321 456777788889999
Q ss_pred HHhcCCHHHHHHHHccC
Q 004369 321 YLKCGLVDEAQKLFDGM 337 (758)
Q Consensus 321 ~~~~g~~~~A~~~~~~m 337 (758)
-++.|++.+.+++-++-
T Consensus 734 A~kt~QikEvERicres 750 (1666)
T KOG0985|consen 734 ACKTGQIKEVERICRES 750 (1666)
T ss_pred HHhhccHHHHHHHHhcc
Confidence 99999999998887654
No 80
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.92 E-value=1.3e-07 Score=86.26 Aligned_cols=162 Identities=13% Similarity=0.052 Sum_probs=134.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCC-CHHHHHHHHH
Q 004369 456 SWTSMITGFANHSLSHQALQLFEDMLLAGVRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKP-VMDHYMCLID 533 (758)
Q Consensus 456 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~ 533 (758)
+...|.-+|.+.|+...|..-+++.++. .|+ ..++..+...|.+.|..+.|.+.|+...+ +.| +..+.|....
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~ 111 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhH
Confidence 3455677888889999999988888884 565 55788888888899999999999988865 344 4677888888
Q ss_pred HHHHcCCHHHHHHHHHHc---CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchh
Q 004369 534 MFVRLGCIEEAFDFIKKM---DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWED 609 (758)
Q Consensus 534 ~~~~~g~~~~A~~~~~~m---~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 609 (758)
-+|..|++++|...|++. |.-| -..+|..+..+..+.|+.+.|+..+++.++++|+.+.....+.+...+.|++-.
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence 899999999999999988 2222 356788888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCC
Q 004369 610 VAVVKNLTREEKL 622 (758)
Q Consensus 610 a~~~~~~m~~~~~ 622 (758)
|..+++....++.
T Consensus 192 Ar~~~~~~~~~~~ 204 (250)
T COG3063 192 ARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHHhccc
Confidence 9999888776543
No 81
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.86 E-value=4.2e-05 Score=80.35 Aligned_cols=448 Identities=16% Similarity=0.135 Sum_probs=237.6
Q ss_pred HHHHHHHhhcCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChHHHHHHHccCCC---CCcchHHHHHHHHHhC
Q 004369 77 YVSLLQECVNRKSLSNAEIIHAHIVKTGSHQDFFVMTFLVNVYGKCGNMEEAQKVFDNLPR---INVVSWTSLISGYVQN 153 (758)
Q Consensus 77 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~ 153 (758)
|..++..| ..+++..+....+.+++ +++....+.....-.+...|+.++|....+.-.. ++.+.|..+.-.+-..
T Consensus 11 F~~~lk~y-E~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~d 88 (700)
T KOG1156|consen 11 FRRALKCY-ETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSD 88 (700)
T ss_pred HHHHHHHH-HHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhh
Confidence 33344433 45667777777777776 3333334433333344567889999888766544 4567799988888888
Q ss_pred CCchHHHHHHHHHHHcCCCCCh-hhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHhhcCChHHHHHH
Q 004369 154 SQPELAIHVFLDMLEAGNYPTN-VTLGTALTACSSLESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGSLNSAIKA 232 (758)
Q Consensus 154 g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~ 232 (758)
.++++|+..|...... .||. ..+.-+--.-++.++++.......+..+.
T Consensus 89 K~Y~eaiKcy~nAl~~--~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql---------------------------- 138 (700)
T KOG1156|consen 89 KKYDEAIKCYRNALKI--EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL---------------------------- 138 (700)
T ss_pred hhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh----------------------------
Confidence 9999999999998774 3443 22322222222333333332222222221
Q ss_pred HhccCCCCcchHHHHHHHHhhCCChhhHHHHHHHHHHCC-CCCChhhHHHHHH------HHcccCChHHHHHHHHHHHHh
Q 004369 233 FNRIREKNVMSWTTVIGACGENGEAVQGLRFFSKMLSEG-IQPNEFTLTSISS------VCGTMLSLRVGAQVHSLGIKL 305 (758)
Q Consensus 233 f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~------~~~~~~~~~~a~~~~~~~~~~ 305 (758)
.......|..++.++--.|+...|..++++..+.. -.|+...|..... .....|..+.+.+........
T Consensus 139 ----~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~ 214 (700)
T KOG1156|consen 139 ----RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ 214 (700)
T ss_pred ----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH
Confidence 01133456666666666666666666666665543 2344444332221 223345555554444332211
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCC--CCeeechhHH-HHHhhhchhhhchhhcCCChhHHH-HHHHHhHh
Q 004369 306 GYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSH--VNLVTWNAMI-AGHAQMMDLAKDDLSAHNGGTEAL-SIFSKLNS 381 (758)
Q Consensus 306 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li-~~~~~~~~~~~~~l~~~g~~~~A~-~l~~~m~~ 381 (758)
+......--.-.+.+.+.+++++|..++..+.. ||.+.|.-.. .++.+ -.+.-+++ .+|....+
T Consensus 215 -i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk-----------~~d~~~~lk~ly~~ls~ 282 (700)
T KOG1156|consen 215 -IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGK-----------IKDMLEALKALYAILSE 282 (700)
T ss_pred -HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHH-----------HhhhHHHHHHHHHHHhh
Confidence 122222333445566777777777777777765 3333333332 22222 11222233 44444433
Q ss_pred C---CCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHH---H-HHHHHHhc-----
Q 004369 382 S---GMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIE---R-ASRVFVEM----- 449 (758)
Q Consensus 382 ~---g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~---~-A~~~~~~~----- 449 (758)
. .-.|-... ++......-.+....++....+.|+++ ++..+...|-.-...+ + +..+...+
T Consensus 283 ~y~r~e~p~Rlp----lsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~ 355 (700)
T KOG1156|consen 283 KYPRHECPRRLP----LSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGM 355 (700)
T ss_pred cCcccccchhcc----HHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccC
Confidence 2 01111111 111111112223333444555555543 2222222222211111 0 01111111
Q ss_pred ---------CCCChhHHHH--HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccccHHHHHHHHHHhhh
Q 004369 450 ---------STRTLISWTS--MITGFANHSLSHQALQLFEDMLLAGVRPNQV-TFVGALAACSNAGMVYEALGYFEMMQK 517 (758)
Q Consensus 450 ---------~~~~~~~~~~--li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~ 517 (758)
..|....|+. ++..|-..|+++.|+.+++.... -.|+.+ -|..=.+.+.+.|++++|..++++..+
T Consensus 356 f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~e 433 (700)
T KOG1156|consen 356 FNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQE 433 (700)
T ss_pred CCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Confidence 1234445554 67778889999999999999887 477744 454555778899999999999999876
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCC-CCHH--------HHHHH--HHHHHHcCChhHHHHHHHHH
Q 004369 518 EYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKMDFE-PNEV--------IWSVF--IAGCRRHGNMELGFYAAEQL 583 (758)
Q Consensus 518 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p~~~--------~~~~l--l~~~~~~g~~~~a~~~~~~~ 583 (758)
--.||...-+--+.-..++.+.++|.++.....-. -+.. .|-.+ ..+|.+.|++.+|++-+..+
T Consensus 434 --lD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 434 --LDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred --ccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 33466555445666777999999999987776111 0211 34444 34677888887777654444
No 82
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.85 E-value=3.1e-05 Score=81.29 Aligned_cols=387 Identities=13% Similarity=0.081 Sum_probs=218.9
Q ss_pred hcCChHHHHHHHhccCC---CCcchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChh-hHHHHHHHHcccCChHHHHH
Q 004369 222 TCGSLNSAIKAFNRIRE---KNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEF-TLTSISSVCGTMLSLRVGAQ 297 (758)
Q Consensus 222 ~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~ 297 (758)
..|+-++|......-.. ++.+.|..+.-.+-...++++|+..|+..... .||.. .+.-+--.-++.++++....
T Consensus 53 ~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~--~~dN~qilrDlslLQ~QmRd~~~~~~ 130 (700)
T KOG1156|consen 53 CLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI--EKDNLQILRDLSLLQIQMRDYEGYLE 130 (700)
T ss_pred cccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHHhhhhHHH
Confidence 34555666555554443 34566776665565666777777777776653 23332 22222222234445544444
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCC-----CCeeechhHHHHHhhhchhhhchhhcCCChhHH
Q 004369 298 VHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSH-----VNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEA 372 (758)
Q Consensus 298 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A 372 (758)
......+.. +.....|..+.-++.-.|+...|..+.++... ++...+.-...-.-+. +.+.+.|..++|
T Consensus 131 tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n-----~i~~E~g~~q~a 204 (700)
T KOG1156|consen 131 TRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQN-----QILIEAGSLQKA 204 (700)
T ss_pred HHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHH-----HHHHHcccHHHH
Confidence 444433322 33344566666666677777777777766543 2333333222222221 112338888888
Q ss_pred HHHHHHhHhCCCCCCHHHH-HHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHH-HHHHhcC
Q 004369 373 LSIFSKLNSSGMKPDLYTF-SSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERAS-RVFVEMS 450 (758)
Q Consensus 373 ~~l~~~m~~~g~~p~~~t~-~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~-~~~~~~~ 450 (758)
++.+..-... ..|...+ .+-...+.+.+++++|..++..++... +.+...|-.+..++.+--+.-++. .+|....
T Consensus 205 le~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn-Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls 281 (700)
T KOG1156|consen 205 LEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN-PDNLDYYEGLEKALGKIKDMLEALKALYAILS 281 (700)
T ss_pred HHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC-chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 8887665432 2233322 223345677889999999998888763 334444555566665433333333 5555544
Q ss_pred CC---ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHH---H-HHHHHHHhhhhc----
Q 004369 451 TR---TLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVY---E-ALGYFEMMQKEY---- 519 (758)
Q Consensus 451 ~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~---~-a~~~~~~~~~~~---- 519 (758)
+. ....-..=++........+..-+++..+.+.|++|--..+.++. -.-...+ + +..+...+....
T Consensus 282 ~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLy---k~p~k~~~le~Lvt~y~~~L~~~~~f~~ 358 (700)
T KOG1156|consen 282 EKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLY---KDPEKVAFLEKLVTSYQHSLSGTGMFNF 358 (700)
T ss_pred hcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHH---hchhHhHHHHHHHHHHHhhcccccCCCc
Confidence 21 00000000011111222444556677777888766444444433 2211111 1 122222221100
Q ss_pred ---C--CCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHc-CCCCCHH-HHHHHHHHHHHcCChhHHHHHHHHHhccCCCC
Q 004369 520 ---K--IKPVMD--HYMCLIDMFVRLGCIEEAFDFIKKM-DFEPNEV-IWSVFIAGCRRHGNMELGFYAAEQLLKLKPKD 590 (758)
Q Consensus 520 ---~--~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 590 (758)
+ -+|... ++-.++..|-+.|+++.|++.++.. +..|..+ .|..=...+...|++++|...++++.+++-.|
T Consensus 359 ~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aD 438 (700)
T KOG1156|consen 359 LDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTAD 438 (700)
T ss_pred ccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchh
Confidence 0 145543 4456788899999999999999988 7677644 35455577888899999999999999999877
Q ss_pred chhHHHHHHHhhhCCCchhHHHHHHHhhhCCC
Q 004369 591 CESYAMLLDIFVSAGRWEDVAVVKNLTREEKL 622 (758)
Q Consensus 591 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 622 (758)
......-++-..++.+.++|.++.......|.
T Consensus 439 R~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 439 RAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 66666778888899999999999888776653
No 83
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.83 E-value=9.1e-08 Score=91.22 Aligned_cols=232 Identities=14% Similarity=0.091 Sum_probs=194.8
Q ss_pred hhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHH
Q 004369 346 NAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVV 425 (758)
Q Consensus 346 ~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~ 425 (758)
+.|-.+|.+ .|.+.+|.+-|+.-..+ .|-..||..+-.+|.+..+++.|..++.+-++. ++.|+..
T Consensus 227 ~Q~gkCylr-----------Lgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~ 292 (478)
T KOG1129|consen 227 QQMGKCYLR-----------LGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTY 292 (478)
T ss_pred HHHHHHHHH-----------hcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhh
Confidence 567788999 99999999999988876 566678888999999999999999999988875 4667777
Q ss_pred HhHHhhhHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 004369 426 GTALVNMYKKCGRIERASRVFVEMST---RTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNA 502 (758)
Q Consensus 426 ~~~Li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 502 (758)
..-....+-..++.++|.++++...+ .|+.+...+..+|.-.++++-|+..|++++..|+. +...|..+.-+|...
T Consensus 293 l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~ya 371 (478)
T KOG1129|consen 293 LLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYA 371 (478)
T ss_pred hhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhh
Confidence 77788889999999999999998764 35666667778899999999999999999999965 566788888899999
Q ss_pred ccHHHHHHHHHHhhhhcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHH
Q 004369 503 GMVYEALGYFEMMQKEYKIKPV--MDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFY 578 (758)
Q Consensus 503 g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~ 578 (758)
+.+|-++.-|++.... --.|+ ..+|-.|.....-.|++.-|...|+-. ...| +...++.|.-.-.+.|+++.|..
T Consensus 372 qQ~D~~L~sf~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Ars 450 (478)
T KOG1129|consen 372 QQIDLVLPSFQRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARS 450 (478)
T ss_pred cchhhhHHHHHHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHH
Confidence 9999999999988763 34454 467888888888999999999999877 4445 56789999988899999999999
Q ss_pred HHHHHhccCCCCchh
Q 004369 579 AAEQLLKLKPKDCES 593 (758)
Q Consensus 579 ~~~~~~~~~p~~~~~ 593 (758)
++..+....|+-.+.
T Consensus 451 ll~~A~s~~P~m~E~ 465 (478)
T KOG1129|consen 451 LLNAAKSVMPDMAEV 465 (478)
T ss_pred HHHHhhhhCcccccc
Confidence 999999988874433
No 84
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.83 E-value=3.3e-05 Score=80.21 Aligned_cols=126 Identities=14% Similarity=0.098 Sum_probs=69.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHH--------HHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCC-CCCH
Q 004369 455 ISWTSMITGFANHSLSHQALQLFE--------DMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKI-KPVM 525 (758)
Q Consensus 455 ~~~~~li~~~~~~g~~~~A~~~~~--------~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~-~p~~ 525 (758)
+.--+++......|+++.|++++. ...+.+-.|..+. .+..-+.+.++-+.|..++.+...-+.. .+..
T Consensus 377 ~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~--aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s 454 (652)
T KOG2376|consen 377 VVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVG--AIVALYYKIKDNDSASAVLDSAIKWWRKQQTGS 454 (652)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHH--HHHHHHHhccCCccHHHHHHHHHHHHHHhcccc
Confidence 344445555566666777766666 4444444554443 3333455555555555555554432111 1111
Q ss_pred ----HHHHHHHHHHHHcCCHHHHHHHHHHc-CCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 004369 526 ----DHYMCLIDMFVRLGCIEEAFDFIKKM-DFE-PNEVIWSVFIAGCRRHGNMELGFYAAEQL 583 (758)
Q Consensus 526 ----~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 583 (758)
..+.-++..-.+.|+-++|..+++++ ... +|..+...++.+|+.. |.+.|+.+-+++
T Consensus 455 ~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 455 IALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred hHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 22333334445668888888888887 433 4677777777777765 466666665544
No 85
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.80 E-value=2.6e-07 Score=92.37 Aligned_cols=240 Identities=14% Similarity=0.017 Sum_probs=159.5
Q ss_pred CCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHH
Q 004369 366 HNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRV 445 (758)
Q Consensus 366 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~ 445 (758)
.|++..++.-.. .....-..+..+...+.+++...|..+.+ ...+.+.. .|.......+...+...++-+.+..-
T Consensus 14 ~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~v---l~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~ 88 (290)
T PF04733_consen 14 LGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSV---LSEIKKSS-SPELQAVRLLAEYLSSPSDKESALEE 88 (290)
T ss_dssp TT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHH---HHHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHH
T ss_pred hhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHH---HHHhccCC-ChhHHHHHHHHHHHhCccchHHHHHH
Confidence 788888886655 32222222344555667777777776543 33333333 55655555555545444566667666
Q ss_pred HHhcC-CC----ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcC
Q 004369 446 FVEMS-TR----TLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYK 520 (758)
Q Consensus 446 ~~~~~-~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 520 (758)
+++.. .. +..........+...|++++|++++++- .+.......+..+.+.++++.|.+.++.|.+
T Consensus 89 l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--- 159 (290)
T PF04733_consen 89 LKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ--- 159 (290)
T ss_dssp HHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC---
T ss_pred HHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh---
Confidence 65544 22 2222222223455679999999988652 3455566677889999999999999999964
Q ss_pred CCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHH
Q 004369 521 IKPVMDH---YMCLIDMFVRLGCIEEAFDFIKKM--DFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYA 595 (758)
Q Consensus 521 ~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 595 (758)
+..|... ..+.+..+.-.+.+.+|..+|+++ ...++..+.+.+..++...|++++|+.+++++++.+|.++.+..
T Consensus 160 ~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~La 239 (290)
T PF04733_consen 160 IDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLA 239 (290)
T ss_dssp CSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHH
Confidence 3445322 233334333344799999999999 45568888999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCc-hhHHHHHHHhhh
Q 004369 596 MLLDIFVSAGRW-EDVAVVKNLTRE 619 (758)
Q Consensus 596 ~l~~~~~~~g~~-~~a~~~~~~m~~ 619 (758)
.++-+....|+. +.+.+++..++.
T Consensus 240 Nliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 240 NLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHH
Confidence 999999999998 567788888876
No 86
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=2.5e-05 Score=77.39 Aligned_cols=406 Identities=12% Similarity=0.029 Sum_probs=237.6
Q ss_pred ChhHHHHHHHHHhhcCChHHHHHHHhccCCC-CcchHHHHHHHHhhCC-ChhhHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 004369 209 DTSVGNSLCSLYSTCGSLNSAIKAFNRIREK-NVMSWTTVIGACGENG-EAVQGLRFFSKMLSEGIQPNEFTLTSISSVC 286 (758)
Q Consensus 209 ~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 286 (758)
+...-...+..|...++-+.|.....+.+.. ...--|.|+.-+-+.| +..++.--+.+....-+ .... .|.+.
T Consensus 96 ~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp----~aL~-~i~~l 170 (564)
T KOG1174|consen 96 DAEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECP----MALQ-VIEAL 170 (564)
T ss_pred cHHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcc----hHHH-HHHHH
Confidence 3444556788888899999999999888874 3334444444443333 22233333333332210 0000 00010
Q ss_pred cccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc--CCHHHHHHHHccCCC-----CCeeechhHHHHHhhhchhh
Q 004369 287 GTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKC--GLVDEAQKLFDGMSH-----VNLVTWNAMIAGHAQMMDLA 359 (758)
Q Consensus 287 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~-----~~~~~~~~li~~~~~~~~~~ 359 (758)
.+.+ +..++.--..|-...++++......-+.+|+.+ ++-..|...|-.+.. .|+.....+...+..
T Consensus 171 l~l~-v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~----- 244 (564)
T KOG1174|consen 171 LELG-VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYY----- 244 (564)
T ss_pred HHHh-hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhh-----
Confidence 0000 000001111111222344444444444444443 333333333322221 344556666777777
Q ss_pred hchhhcCCChhHHHHHHHHhHhCCCCCCHHH-HHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCC
Q 004369 360 KDDLSAHNGGTEALSIFSKLNSSGMKPDLYT-FSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGR 438 (758)
Q Consensus 360 ~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~ 438 (758)
.|+.++|...|++.+.. .|+..+ .....-.+.+.|+.+....+...+....- -....|-.-........+
T Consensus 245 ------~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~-~ta~~wfV~~~~l~~~K~ 315 (564)
T KOG1174|consen 245 ------NGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK-YTASHWFVHAQLLYDEKK 315 (564)
T ss_pred ------hcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh-cchhhhhhhhhhhhhhhh
Confidence 89999999999887653 444332 11111223556677776666655544220 111111111122233567
Q ss_pred HHHHHHHHHhcCCC---ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccccHHHHHHHHHH
Q 004369 439 IERASRVFVEMSTR---TLISWTSMITGFANHSLSHQALQLFEDMLLAGVRP-NQVTFVGALAACSNAGMVYEALGYFEM 514 (758)
Q Consensus 439 ~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~ 514 (758)
++.|+.+-++.... ++..+-.-...+.+.|+.++|.-.|+..+. +.| +...|..|+.+|...|++.+|.-.-+.
T Consensus 316 ~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~ 393 (564)
T KOG1174|consen 316 FERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANW 393 (564)
T ss_pred HHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHH
Confidence 78888877776543 444444445677788999999999998877 454 467899999999999999998877766
Q ss_pred hhhhcCCCCCHHHHHHHH-HHHH-HcCCHHHHHHHHHHc-CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCC
Q 004369 515 MQKEYKIKPVMDHYMCLI-DMFV-RLGCIEEAFDFIKKM-DFEPN-EVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKD 590 (758)
Q Consensus 515 ~~~~~~~~p~~~~~~~li-~~~~-~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 590 (758)
..+. +..+..+...+. +.+. ...--|+|.+++++. .++|+ ....+.+...|...|..+.+..++++.+...|++
T Consensus 394 ~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~ 471 (564)
T KOG1174|consen 394 TIRL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV 471 (564)
T ss_pred HHHH--hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc
Confidence 6552 233444443332 2222 112347788888887 77886 4567788888999999999999999999988875
Q ss_pred chhHHHHHHHhhhCCCchhHHHHHHHhhhCCCCCCCceeEEEECCEEEEEecCCCCCCChHHHHHHHHHHHHHHH
Q 004369 591 CESYAMLLDIFVSAGRWEDVAVVKNLTREEKLSETDDWSWIRIKDKVYSFKPNDGLHPQSAEIFKVLDELVEKAK 665 (758)
Q Consensus 591 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~m~ 665 (758)
...+.|++++...+.+.+|...+..... ..|+.+....-+..|.++|+
T Consensus 472 -~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--------------------------~dP~~~~sl~Gl~~lEK~~~ 519 (564)
T KOG1174|consen 472 -NLHNHLGDIMRAQNEPQKAMEYYYKALR--------------------------QDPKSKRTLRGLRLLEKSDD 519 (564)
T ss_pred -HHHHHHHHHHHHhhhHHHHHHHHHHHHh--------------------------cCccchHHHHHHHHHHhccC
Confidence 7888999999999999999988887764 45666665555655665554
No 87
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.77 E-value=2.8e-06 Score=77.89 Aligned_cols=195 Identities=14% Similarity=0.038 Sum_probs=115.6
Q ss_pred HHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCCH
Q 004369 394 ILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMS---TRTLISWTSMITGFANHSLS 470 (758)
Q Consensus 394 ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~ 470 (758)
+.-.|...|+...|+.-++.+++.. +.+..++..+...|.+.|..+.|.+-|++.. ..+-...|....-+|..|++
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~ 119 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRP 119 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCCh
Confidence 3445566666666666666666653 3445566666666677777777766666543 33445555566666666677
Q ss_pred HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004369 471 HQALQLFEDMLLAGVRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIK 549 (758)
Q Consensus 471 ~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 549 (758)
++|...|++....-.-|. ..||..+.-+-.+.|+.+.|..+|++..+. .+........+.+...+.|++-+|..+++
T Consensus 120 ~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~--dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~ 197 (250)
T COG3063 120 EEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL--DPQFPPALLELARLHYKAGDYAPARLYLE 197 (250)
T ss_pred HHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh--CcCCChHHHHHHHHHHhcccchHHHHHHH
Confidence 777777766665432222 345666655556667777777776666541 11223445556666666677777766666
Q ss_pred Hc--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCc
Q 004369 550 KM--DFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDC 591 (758)
Q Consensus 550 ~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 591 (758)
.. ...++..+....+..-...||.+.+-+.-.++.+..|...
T Consensus 198 ~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~ 241 (250)
T COG3063 198 RYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSE 241 (250)
T ss_pred HHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 65 3335555555555555566666666666666666666543
No 88
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.75 E-value=2.9e-07 Score=94.94 Aligned_cols=218 Identities=13% Similarity=0.082 Sum_probs=169.7
Q ss_pred hcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCCHHHHHH
Q 004369 399 SRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMST---RTLISWTSMITGFANHSLSHQALQ 475 (758)
Q Consensus 399 ~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 475 (758)
.+.|++.+|.-.|+..++.. +.+...|-.|....+..++-..|+..+++..+ .|....-+|.-.|...|.-.+|+.
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 34566777777777777664 55677888888888888888888888887653 455677777778888898899999
Q ss_pred HHHHHHHcCCC--------CCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004369 476 LFEDMLLAGVR--------PNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDF 547 (758)
Q Consensus 476 ~~~~m~~~g~~--------p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 547 (758)
+++.-+....+ ++..+-.. ........+....++|-.+....+..+|.+++.+|.-+|--.|.+++|.+.
T Consensus 375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 375 MLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 98887653211 01000000 122233345566677777766567678888999999999999999999999
Q ss_pred HHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369 548 IKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTRE 619 (758)
Q Consensus 548 ~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 619 (758)
|+.+ ..+| |..+||-|...++...+.++|+.+|.+++++.|.-..+...|+-.|...|.++||.+.+-....
T Consensus 453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 9998 8888 6778999999999999999999999999999999999999999999999999999998877655
No 89
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.74 E-value=6.6e-05 Score=80.57 Aligned_cols=81 Identities=16% Similarity=0.091 Sum_probs=58.6
Q ss_pred hHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 004369 243 SWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYL 322 (758)
Q Consensus 243 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 322 (758)
.|.-...-+-..|+.+.|+.+|..... |-++++..+-.|+.++|.++-++ .-|......|.++|-
T Consensus 914 L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YE 978 (1416)
T KOG3617|consen 914 LYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYE 978 (1416)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhh
Confidence 333333444457888888888887654 55667777778888888877654 345666677888999
Q ss_pred hcCCHHHHHHHHccCC
Q 004369 323 KCGLVDEAQKLFDGMS 338 (758)
Q Consensus 323 ~~g~~~~A~~~~~~m~ 338 (758)
..|++.+|...|-+..
T Consensus 979 n~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 979 NDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 9999999988887664
No 90
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=1.8e-05 Score=81.47 Aligned_cols=216 Identities=13% Similarity=0.092 Sum_probs=144.9
Q ss_pred HHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCCCChh----------HHHHH
Q 004369 391 FSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMSTRTLI----------SWTSM 460 (758)
Q Consensus 391 ~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~~----------~~~~l 460 (758)
...+.++.-+..+++.+.+-+...++.. .+..-++....+|...|.+.++...-....+.+-. +...+
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 3455666666677777877777777654 56666777777888888777766655443322111 22234
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHH-HHHHHHHHHHHcC
Q 004369 461 ITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMD-HYMCLIDMFVRLG 539 (758)
Q Consensus 461 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g 539 (758)
..+|.+.++++.|+..|.+....-..||..+ +....+++....+... -+.|... -.-.=...+.+.|
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~g 372 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKG 372 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhcc
Confidence 4467777888999999988776555554322 2233344444333332 2334321 1112256677888
Q ss_pred CHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHh
Q 004369 540 CIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLT 617 (758)
Q Consensus 540 ~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 617 (758)
++.+|++.+.++ ...| |...|.....+|.+.|++..|+.-.+..++++|+....|..=+-++....+|++|.+.+...
T Consensus 373 dy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~ea 452 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEA 452 (539)
T ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888887 5556 66778888888888888888888888888888888888888888888888888888888877
Q ss_pred hhC
Q 004369 618 REE 620 (758)
Q Consensus 618 ~~~ 620 (758)
.+.
T Consensus 453 le~ 455 (539)
T KOG0548|consen 453 LEL 455 (539)
T ss_pred Hhc
Confidence 663
No 91
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.68 E-value=0.0008 Score=80.79 Aligned_cols=406 Identities=9% Similarity=-0.017 Sum_probs=237.3
Q ss_pred hHHHHHHHHHHHcCCC--C-C----hhhHHHHHHHhccc----CChHHHHHHHHHHHHhCCCCChhHHHHHHHHHhhcCC
Q 004369 157 ELAIHVFLDMLEAGNY--P-T----NVTLGTALTACSSL----ESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGS 225 (758)
Q Consensus 157 ~~A~~~~~~m~~~g~~--p-~----~~t~~~ll~~~~~~----~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~ 225 (758)
+.+.+.++++...|+. | + .+.|+.++..+... .+.+...++|.. ....|...|+
T Consensus 292 ~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~~~~~~~~~~lh~r---------------aa~~~~~~g~ 356 (903)
T PRK04841 292 ENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQWELAQELPELHRA---------------AAEAWLAQGF 356 (903)
T ss_pred CcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHHhcCchHHHHHHHH---------------HHHHHHHCCC
Confidence 3456667777766641 1 1 24566666654432 122333334333 3344666777
Q ss_pred hHHHHHHHhccCCCCcch--HHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHHHHHHHHHH
Q 004369 226 LNSAIKAFNRIREKNVMS--WTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGI 303 (758)
Q Consensus 226 ~~~A~~~f~~~~~~~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 303 (758)
+.+|..........+... ...........|+++.+..++..+.......+..........+...++.+.+..++..+.
T Consensus 357 ~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~ 436 (903)
T PRK04841 357 PSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAE 436 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 777777666655432211 111123344567777777777665322111122222333344456688888888887765
Q ss_pred HhCCC------Cc--hhHHHHHHHHHHhcCCHHHHHHHHccCCC----CCe----eechhHHHHHhhhchhhhchhhcCC
Q 004369 304 KLGYA------SN--LRVRNSIMYLYLKCGLVDEAQKLFDGMSH----VNL----VTWNAMIAGHAQMMDLAKDDLSAHN 367 (758)
Q Consensus 304 ~~g~~------~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~----~~~~~li~~~~~~~~~~~~~l~~~g 367 (758)
..--. +. ......+...+...|++++|...+++... .+. ..++.+...+.. .|
T Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~-----------~G 505 (903)
T PRK04841 437 QELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHC-----------KG 505 (903)
T ss_pred HhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHH-----------cC
Confidence 43111 11 12223344556788999999988877532 111 122333344445 89
Q ss_pred ChhHHHHHHHHhHhC----CC-CCCHHHHHHHHHHHhcccchHHHHHHHHHHHHc----CCC---ChHHHHhHHhhhHHh
Q 004369 368 GGTEALSIFSKLNSS----GM-KPDLYTFSSILTICSRLVALEQGEQIHALTLKT----GFL---SDVVVGTALVNMYKK 435 (758)
Q Consensus 368 ~~~~A~~l~~~m~~~----g~-~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~----~~~---~~~~~~~~Li~~y~~ 435 (758)
++++|...+.+.... |- .+...++..+...+...|+++.|...+...... +.. .....+..+...+..
T Consensus 506 ~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 585 (903)
T PRK04841 506 ELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWE 585 (903)
T ss_pred CHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence 999999999887642 11 111234445556778889999999988776542 221 123345556667777
Q ss_pred cCCHHHHHHHHHhcCC------C--ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHH-----HHHHHHHhc
Q 004369 436 CGRIERASRVFVEMST------R--TLISWTSMITGFANHSLSHQALQLFEDMLLAGVR-PNQVTF-----VGALAACSN 501 (758)
Q Consensus 436 ~g~~~~A~~~~~~~~~------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~-----~~ll~a~~~ 501 (758)
.|++++|...+++... + ....+..+...+...|++++|...+++.....-. .....+ ...+..+..
T Consensus 586 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (903)
T PRK04841 586 WARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQM 665 (903)
T ss_pred hcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHH
Confidence 8999999888877531 1 1234555666778899999999998887552111 111111 011233445
Q ss_pred cccHHHHHHHHHHhhhhcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHc-------CCCCC-HHHHHHHHHHHHHc
Q 004369 502 AGMVYEALGYFEMMQKEYKIKPV---MDHYMCLIDMFVRLGCIEEAFDFIKKM-------DFEPN-EVIWSVFIAGCRRH 570 (758)
Q Consensus 502 ~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~-~~~~~~ll~~~~~~ 570 (758)
.|+.+.|.+.+...... ..... ...+..+..++...|+.++|...+++. +..++ ..+...+..++...
T Consensus 666 ~g~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~ 744 (903)
T PRK04841 666 TGDKEAAANWLRQAPKP-EFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQ 744 (903)
T ss_pred CCCHHHHHHHHHhcCCC-CCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHc
Confidence 78889998887765431 11111 111345677888999999998888876 22222 23566677788899
Q ss_pred CChhHHHHHHHHHhccCCC
Q 004369 571 GNMELGFYAAEQLLKLKPK 589 (758)
Q Consensus 571 g~~~~a~~~~~~~~~~~p~ 589 (758)
|+.++|...+++++++...
T Consensus 745 G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 745 GRKSEAQRVLLEALKLANR 763 (903)
T ss_pred CCHHHHHHHHHHHHHHhCc
Confidence 9999999999999987644
No 92
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.68 E-value=3.1e-05 Score=74.89 Aligned_cols=208 Identities=15% Similarity=0.152 Sum_probs=123.9
Q ss_pred HHHHHhhcCChHHHHHHHhccCCCCcchHHHHH---HHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCCh
Q 004369 216 LCSLYSTCGSLNSAIKAFNRIREKNVMSWTTVI---GACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSL 292 (758)
Q Consensus 216 Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 292 (758)
|...+.-.|++.+|+.-|....+-|+..|-++. ..|...|+...|+.=|.+.++ .+||-..-.
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~AR------------ 109 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAAR------------ 109 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHH------------
Confidence 344455567788888888877777777777664 456677777777777776665 345532110
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCeeechhHHHHHhhhchhhhchhhcCCChhHH
Q 004369 293 RVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSHVNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEA 372 (758)
Q Consensus 293 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A 372 (758)
++. ...+.|.|.++.|..-|+.+.+.++. +|...+|
T Consensus 110 ----------iQR------------g~vllK~Gele~A~~DF~~vl~~~~s----------------------~~~~~ea 145 (504)
T KOG0624|consen 110 ----------IQR------------GVVLLKQGELEQAEADFDQVLQHEPS----------------------NGLVLEA 145 (504)
T ss_pred ----------HHh------------chhhhhcccHHHHHHHHHHHHhcCCC----------------------cchhHHH
Confidence 011 12345677777777777776542211 2222222
Q ss_pred HHHHHHhHhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcC--
Q 004369 373 LSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMS-- 450 (758)
Q Consensus 373 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~-- 450 (758)
.+-+....+ .......+..+...|+...+......+++.. +.|...+..-...|...|++..|..-++...
T Consensus 146 qskl~~~~e------~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askL 218 (504)
T KOG0624|consen 146 QSKLALIQE------HWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKL 218 (504)
T ss_pred HHHHHhHHH------HHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 221111111 0112223334455567777777766666643 5577777777788888888888876655443
Q ss_pred -CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 004369 451 -TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQV 490 (758)
Q Consensus 451 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 490 (758)
..+....--+-..+...|+.+.++...++-++ +.||..
T Consensus 219 s~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK 257 (504)
T KOG0624|consen 219 SQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHK 257 (504)
T ss_pred cccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchh
Confidence 44555666666677778888888888887776 577754
No 93
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.66 E-value=0.00031 Score=74.59 Aligned_cols=256 Identities=14% Similarity=0.160 Sum_probs=146.0
Q ss_pred HHhcCCHHHHHHHHccCCCCCee--echhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHH
Q 004369 321 YLKCGLVDEAQKLFDGMSHVNLV--TWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILTIC 398 (758)
Q Consensus 321 ~~~~g~~~~A~~~~~~m~~~~~~--~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 398 (758)
-....++.+|..+++.+++.++. -|.-+...|+. .|+++.|.++|.+.- .+.-.|..|
T Consensus 742 ai~akew~kai~ildniqdqk~~s~yy~~iadhyan-----------~~dfe~ae~lf~e~~---------~~~dai~my 801 (1636)
T KOG3616|consen 742 AIGAKEWKKAISILDNIQDQKTASGYYGEIADHYAN-----------KGDFEIAEELFTEAD---------LFKDAIDMY 801 (1636)
T ss_pred HhhhhhhhhhHhHHHHhhhhccccccchHHHHHhcc-----------chhHHHHHHHHHhcc---------hhHHHHHHH
Confidence 33445555555555555543332 24444445555 556666655554321 123344555
Q ss_pred hcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 004369 399 SRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQALQLFE 478 (758)
Q Consensus 399 ~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 478 (758)
.+.|+++.|.++-.+. .|.......|-+-..-.-+.|++.+|++++-.+..|+. -|..|-++|..+..+.+.+
T Consensus 802 ~k~~kw~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~ 874 (1636)
T KOG3616|consen 802 GKAGKWEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVE 874 (1636)
T ss_pred hccccHHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHH
Confidence 5666665555443322 12233444455555555677888888888877777764 3567778888888777776
Q ss_pred HHHHcCCCCC--HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCC-C
Q 004369 479 DMLLAGVRPN--QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKMDFE-P 555 (758)
Q Consensus 479 ~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p 555 (758)
+- .|+ ..|...+..-+...|++..|...|-+.. -|.+-+++|-..+.+++|.++-+.-|-. .
T Consensus 875 k~-----h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriaktegg~n~ 939 (1636)
T KOG3616|consen 875 KH-----HGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKTEGGANA 939 (1636)
T ss_pred Hh-----ChhhhhHHHHHHHHHHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhccccccH
Confidence 53 344 3455566666777888888887775553 2556677888888888887776654211 0
Q ss_pred ---CHHHHHHH------HHHHHHcCChhHHH-------------HHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHH
Q 004369 556 ---NEVIWSVF------IAGCRRHGNMELGF-------------YAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVV 613 (758)
Q Consensus 556 ---~~~~~~~l------l~~~~~~g~~~~a~-------------~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 613 (758)
-...|..- +..+-++|-++.|. .+.+-..+ ..-+.+...++-.+-..|++++|.+-
T Consensus 940 ~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k--~k~~~vhlk~a~~ledegk~edaskh 1017 (1636)
T KOG3616|consen 940 EKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAK--DKMGEVHLKLAMFLEDEGKFEDASKH 1017 (1636)
T ss_pred HHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhh--ccCccchhHHhhhhhhccchhhhhHh
Confidence 01222211 12233444444443 33332222 22346777788888899999999776
Q ss_pred HHHhhhC
Q 004369 614 KNLTREE 620 (758)
Q Consensus 614 ~~~m~~~ 620 (758)
+-...+.
T Consensus 1018 yveaikl 1024 (1636)
T KOG3616|consen 1018 YVEAIKL 1024 (1636)
T ss_pred hHHHhhc
Confidence 6655543
No 94
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.64 E-value=1.1e-05 Score=86.68 Aligned_cols=251 Identities=15% Similarity=0.116 Sum_probs=178.4
Q ss_pred CCChhHHHHHHHHhHhCCCCCCH-HHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhc-----CCH
Q 004369 366 HNGGTEALSIFSKLNSSGMKPDL-YTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKC-----GRI 439 (758)
Q Consensus 366 ~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~-----g~~ 439 (758)
.|++++|++.+.+-.. .-+|. ..+......+.+.|+.++|..++..+++.+ +.+..-|..|..+..-. .+.
T Consensus 17 ~g~~~~AL~~L~~~~~--~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~~~~~ 93 (517)
T PF12569_consen 17 AGDYEEALEHLEKNEK--QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLSDEDV 93 (517)
T ss_pred CCCHHHHHHHHHhhhh--hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcccccccH
Confidence 9999999999977443 34454 445566677899999999999999999986 45666677777766332 256
Q ss_pred HHHHHHHHhcCCCChh--HHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhh
Q 004369 440 ERASRVFVEMSTRTLI--SWTSMITGFANHSL-SHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQ 516 (758)
Q Consensus 440 ~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 516 (758)
+....+++++....+. ....+.-.+..... -..+..++..+...|+++ +|+.|-.-|......+-..+++....
T Consensus 94 ~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~ 170 (517)
T PF12569_consen 94 EKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYV 170 (517)
T ss_pred HHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHHH
Confidence 7777888876533221 11111111221111 235556677778888654 44555545555555555555555543
Q ss_pred hhc-------------CCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCC-HHHHHHHHHHHHHcCChhHHHHH
Q 004369 517 KEY-------------KIKPVM--DHYMCLIDMFVRLGCIEEAFDFIKKM-DFEPN-EVIWSVFIAGCRRHGNMELGFYA 579 (758)
Q Consensus 517 ~~~-------------~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~ 579 (758)
... .-.|+. .++.-+...|-..|++++|++++++. ...|. +..|..-...+.+.|++++|.+.
T Consensus 171 ~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~ 250 (517)
T PF12569_consen 171 NSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEA 250 (517)
T ss_pred HhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 321 113444 34466688899999999999999988 77775 55677888889999999999999
Q ss_pred HHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhhCCC
Q 004369 580 AEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREEKL 622 (758)
Q Consensus 580 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 622 (758)
++.+.++++.|.....-.+..+.++|+.++|.++.......+.
T Consensus 251 ~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 251 MDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred HHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 9999999999999989999999999999999999998876654
No 95
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.63 E-value=2e-05 Score=84.77 Aligned_cols=126 Identities=15% Similarity=0.124 Sum_probs=80.6
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHH
Q 004369 491 TFVGALAACSNAGMVYEALGYFEMMQKEYKIKPV-MDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGC 567 (758)
Q Consensus 491 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~ 567 (758)
++..+...|.+.|++++|.++.+..++ ..|+ ++.|..-...|-+.|++++|.+.++.. ...+ |..+-+-....+
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~---htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~ 272 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIE---HTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYL 272 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHH
Confidence 334445556677777777777777765 2454 667777777777777777777777776 4444 555555566666
Q ss_pred HHcCChhHHHHHHHHHhccC--CCC-------chhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369 568 RRHGNMELGFYAAEQLLKLK--PKD-------CESYAMLLDIFVSAGRWEDVAVVKNLTRE 619 (758)
Q Consensus 568 ~~~g~~~~a~~~~~~~~~~~--p~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 619 (758)
.+.|+.++|...+....+.+ |.. ......-+.+|.+.|++..|.+.+..+.+
T Consensus 273 LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 273 LRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 77777777777777665544 211 11233456777788887777776655543
No 96
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.61 E-value=3.8e-06 Score=84.11 Aligned_cols=160 Identities=16% Similarity=0.119 Sum_probs=116.1
Q ss_pred HHhHHhhhHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc---
Q 004369 425 VGTALVNMYKKCGRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSN--- 501 (758)
Q Consensus 425 ~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~--- 501 (758)
+.-....+|...|++++|++++.+. .+.......+..|.+.++++.|.+.++.|.+. ..| .+...+..++..
T Consensus 104 ~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~ 178 (290)
T PF04733_consen 104 VQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLAT 178 (290)
T ss_dssp HHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHh
Confidence 3333445567788888888887765 45666667788889999999999999999863 344 334444444432
Q ss_pred -cccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCCh-hHHH
Q 004369 502 -AGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNM-ELGF 577 (758)
Q Consensus 502 -~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~-~~a~ 577 (758)
.+.+.+|..+|+++.. ...++..+.+.+.-+....|++++|.+++.+. ...| |..++-.++......|+. +.+.
T Consensus 179 g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~ 256 (290)
T PF04733_consen 179 GGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAE 256 (290)
T ss_dssp TTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHH
T ss_pred CchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHH
Confidence 2368999999999876 44577888999999999999999999999887 5556 566777788888888877 6678
Q ss_pred HHHHHHhccCCCCc
Q 004369 578 YAAEQLLKLKPKDC 591 (758)
Q Consensus 578 ~~~~~~~~~~p~~~ 591 (758)
+...++....|+.+
T Consensus 257 ~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 257 RYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHCHHHTTTSH
T ss_pred HHHHHHHHhCCCCh
Confidence 88888888888864
No 97
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.58 E-value=1.5e-06 Score=77.51 Aligned_cols=123 Identities=13% Similarity=0.051 Sum_probs=94.8
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CC
Q 004369 475 QLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DF 553 (758)
Q Consensus 475 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~ 553 (758)
.+|++..+ +.|+. +.....++...|++++|...|+.+.. --+.+...|..+..++.+.|++++|...|++. ..
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 44555554 45554 44556677888888888888888865 22335777888888888999999999998888 55
Q ss_pred CC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhh
Q 004369 554 EP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVS 603 (758)
Q Consensus 554 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 603 (758)
.| +...|..+..++...|+.++|...+++++++.|+++..+...+++...
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 66 677788888888899999999999999999999988888877776543
No 98
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.58 E-value=5.4e-05 Score=79.89 Aligned_cols=252 Identities=8% Similarity=-0.059 Sum_probs=157.0
Q ss_pred CCChhHHHHHHHHhHhCCCCCCH-HHHHH---HHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHH
Q 004369 366 HNGGTEALSIFSKLNSSGMKPDL-YTFSS---ILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIER 441 (758)
Q Consensus 366 ~g~~~~A~~l~~~m~~~g~~p~~-~t~~~---ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~ 441 (758)
.|++++|.+.+++..+. .|+. ..+.. ........+..+.+.+.... .....+........+...+...|++++
T Consensus 56 ~g~~~~A~~~~~~~l~~--~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~G~~~~ 132 (355)
T cd05804 56 AGDLPKALALLEQLLDD--YPRDLLALKLHLGAFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEAGQYDR 132 (355)
T ss_pred cCCHHHHHHHHHHHHHH--CCCcHHHHHHhHHHHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHcCCHHH
Confidence 78899999999888775 3433 33331 11111223445555554443 111223334455567778889999999
Q ss_pred HHHHHHhcC---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHhccccHHHHHHHHHHh
Q 004369 442 ASRVFVEMS---TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGV-RPNQ--VTFVGALAACSNAGMVYEALGYFEMM 515 (758)
Q Consensus 442 A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~ 515 (758)
|...+++.. +.+...+..+...|...|++++|+..+++...... .|+. ..|..+...+...|++++|..+++.+
T Consensus 133 A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~ 212 (355)
T cd05804 133 AEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTH 212 (355)
T ss_pred HHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999998876 33566788888899999999999999998877432 2332 23556777788999999999999987
Q ss_pred hhhcCCCCCHHHH-H--HHHHHHHHcCCHHHHHHH---HHHc-CCCC---CHHHHHHHHHHHHHcCChhHHHHHHHHHhc
Q 004369 516 QKEYKIKPVMDHY-M--CLIDMFVRLGCIEEAFDF---IKKM-DFEP---NEVIWSVFIAGCRRHGNMELGFYAAEQLLK 585 (758)
Q Consensus 516 ~~~~~~~p~~~~~-~--~li~~~~~~g~~~~A~~~---~~~m-~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 585 (758)
.......+..... + .++..+...|..+.+... .... +..| ..........++...|+.+.|...++.+..
T Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~ 292 (355)
T cd05804 213 IAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKG 292 (355)
T ss_pred hccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 5421211222111 1 333444444533222222 1111 1111 122223566677788999999998888765
Q ss_pred cC-C--------CCchhHHHHHHHhhhCCCchhHHHHHHHhhhC
Q 004369 586 LK-P--------KDCESYAMLLDIFVSAGRWEDVAVVKNLTREE 620 (758)
Q Consensus 586 ~~-p--------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 620 (758)
.. . .........+.++...|++++|.+.+....+.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 293 RASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 32 1 13455677788899999999999998887764
No 99
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.53 E-value=7.5e-06 Score=77.33 Aligned_cols=146 Identities=6% Similarity=0.039 Sum_probs=110.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCC
Q 004369 461 ITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGC 540 (758)
Q Consensus 461 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 540 (758)
+..|...|+++......+++.. |. ..+...++.+++...++...+ .-+.+...|..|...|...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCC
Confidence 3456777777665443322211 11 012235666777777777665 334568889999999999999
Q ss_pred HHHHHHHHHHc-CCCC-CHHHHHHHHHHH-HHcCC--hhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHH
Q 004369 541 IEEAFDFIKKM-DFEP-NEVIWSVFIAGC-RRHGN--MELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKN 615 (758)
Q Consensus 541 ~~~A~~~~~~m-~~~p-~~~~~~~ll~~~-~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 615 (758)
+++|...+++. ...| +...+..+..++ ...|+ .++|.++++++++.+|+++.++..|+..+...|++++|...++
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999988 6667 667788888764 66676 5899999999999999999999999999999999999999999
Q ss_pred HhhhC
Q 004369 616 LTREE 620 (758)
Q Consensus 616 ~m~~~ 620 (758)
.+.+.
T Consensus 169 ~aL~l 173 (198)
T PRK10370 169 KVLDL 173 (198)
T ss_pred HHHhh
Confidence 98764
No 100
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.53 E-value=8.2e-06 Score=80.35 Aligned_cols=180 Identities=11% Similarity=0.053 Sum_probs=120.3
Q ss_pred ChHHHHhHHhhhHHhcCCHHHHHHHHHhcCCC---Ch---hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----H
Q 004369 421 SDVVVGTALVNMYKKCGRIERASRVFVEMSTR---TL---ISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQ----V 490 (758)
Q Consensus 421 ~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~---~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~ 490 (758)
.....+..++..|.+.|++++|...|+++... +. ..|..+..+|...|++++|+..++++.+. .|+. .
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHH
Confidence 34556667777788888888888888876532 22 35677777888888888888888888774 3331 1
Q ss_pred HHHHHHHHHhcc--------ccHHHHHHHHHHhhhhcCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHcCCCCCHHHHH
Q 004369 491 TFVGALAACSNA--------GMVYEALGYFEMMQKEYKIKPVMD-HYMCLIDMFVRLGCIEEAFDFIKKMDFEPNEVIWS 561 (758)
Q Consensus 491 t~~~ll~a~~~~--------g~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~ 561 (758)
++..+..++.+. |++++|.+.|+.+.+. .|+.. .+..+... +...... .....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~~-----------~~~~~ 170 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNRL-----------AGKEL 170 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHHH-----------HHHHH
Confidence 344444445443 6777888888877653 23321 22111111 1111100 00112
Q ss_pred HHHHHHHHcCChhHHHHHHHHHhccCCCC---chhHHHHHHHhhhCCCchhHHHHHHHhhhC
Q 004369 562 VFIAGCRRHGNMELGFYAAEQLLKLKPKD---CESYAMLLDIFVSAGRWEDVAVVKNLTREE 620 (758)
Q Consensus 562 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 620 (758)
.+...+...|+++.|...++++++..|++ +..+..++.+|.+.|++++|...++.+..+
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45667888999999999999999987764 468899999999999999999998887654
No 101
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.51 E-value=2.6e-06 Score=74.47 Aligned_cols=118 Identities=6% Similarity=0.054 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhh
Q 004369 525 MDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFV 602 (758)
Q Consensus 525 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 602 (758)
.+..-.+...+...|++++|.++|+-. .+.| +..-|-.|...|...|++++|+..+.++..++|+|+..+..++.+|.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 445556677788999999999999988 6677 66779999999999999999999999999999999999999999999
Q ss_pred hCCCchhHHHHHHHhhhCCCCCCCceeEEEECCEEEEEecCCCCCCChHHHHHHHHHHHHHHH
Q 004369 603 SAGRWEDVAVVKNLTREEKLSETDDWSWIRIKDKVYSFKPNDGLHPQSAEIFKVLDELVEKAK 665 (758)
Q Consensus 603 ~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~m~ 665 (758)
..|+.++|++.|+...... ..+|+..++.++.+.....+.
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~-----------------------~~~~~~~~l~~~A~~~L~~l~ 154 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRIC-----------------------GEVSEHQILRQRAEKMLQQLS 154 (157)
T ss_pred HcCCHHHHHHHHHHHHHHh-----------------------ccChhHHHHHHHHHHHHHHhh
Confidence 9999999999999887621 156777877777777666654
No 102
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.50 E-value=0.00021 Score=78.68 Aligned_cols=499 Identities=13% Similarity=0.054 Sum_probs=243.8
Q ss_pred hHHHHHHHHhhcCCChHHHHHHHccCCC---CCcchHHHHHHHHHhCCCchHHHHHHHHHHHcC-CCCChhhHHHHHHHh
Q 004369 110 FVMTFLVNVYGKCGNMEEAQKVFDNLPR---INVVSWTSLISGYVQNSQPELAIHVFLDMLEAG-NYPTNVTLGTALTAC 185 (758)
Q Consensus 110 ~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~ 185 (758)
-.|..|-..|...-+...|.+.|++.-+ -+..+|......|++..+++.|..+.-..-+.. ...-...|...--.+
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 4567777777777777778888877654 345667778888888888888887733222211 000111122222234
Q ss_pred cccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHhhcCChHHHHHHHhccCCCCcchHHHHH---HHHhhCCChhhHHH
Q 004369 186 SSLESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGSLNSAIKAFNRIREKNVMSWTTVI---GACGENGEAVQGLR 262 (758)
Q Consensus 186 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li---~~~~~~g~~~~A~~ 262 (758)
-..++...+..-++...+.. +.|...|..|..+|.++|.+..|.++|.+...-++.+|-.-- ..-+..|.+.+|+.
T Consensus 573 Lea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald 651 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALD 651 (1238)
T ss_pred cCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHH
Confidence 55667777777777766643 246677888888888888888888888777664444333211 22345677777777
Q ss_pred HHHHHHHC------CCCCChhhHHHHHHHHcccCCh-------HHHHHHHHHHHHh--------------------CCCC
Q 004369 263 FFSKMLSE------GIQPNEFTLTSISSVCGTMLSL-------RVGAQVHSLGIKL--------------------GYAS 309 (758)
Q Consensus 263 l~~~m~~~------g~~p~~~t~~~ll~~~~~~~~~-------~~a~~~~~~~~~~--------------------g~~~ 309 (758)
.+...... +..--..++..+...+...|-. +...+.+...+.. .++|
T Consensus 652 ~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~ 731 (1238)
T KOG1127|consen 652 ALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEP 731 (1238)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcc
Confidence 66655321 1111112222222222111111 1111111111100 1234
Q ss_pred chhHHHHHHHHHH----hcCCH---H---HHHHHHccCCC--CCeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHH
Q 004369 310 NLRVRNSIMYLYL----KCGLV---D---EAQKLFDGMSH--VNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFS 377 (758)
Q Consensus 310 ~~~~~~~li~~~~----~~g~~---~---~A~~~~~~m~~--~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~ 377 (758)
+ .+...++..+. +.+.. | -+.+.+-.-.. .+..+|..++..|.+..-..+.. ..+...|+.-+.
T Consensus 732 ~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et---~~~~~~Ai~c~K 807 (1238)
T KOG1127|consen 732 S-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGET---MKDACTAIRCCK 807 (1238)
T ss_pred c-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCc---chhHHHHHHHHH
Confidence 4 22222222222 22222 1 11111111111 23567777766665522211100 122246777777
Q ss_pred HhHhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcC-CCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCC---CC
Q 004369 378 KLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTG-FLSDVVVGTALVNMYKKCGRIERASRVFVEMST---RT 453 (758)
Q Consensus 378 ~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~---~~ 453 (758)
+.++. ..|...+-..+......|++..+. |+.+...- .+....+|..+.-.+.+..+++-|...|.+... .|
T Consensus 808 kaV~L--~ann~~~WnaLGVlsg~gnva~aQ--HCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~n 883 (1238)
T KOG1127|consen 808 KAVSL--CANNEGLWNALGVLSGIGNVACAQ--HCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLN 883 (1238)
T ss_pred HHHHH--hhccHHHHHHHHHhhccchhhhhh--hhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCchh
Confidence 66653 333333333444445555554443 44443322 244566777777778888888888888877663 24
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHH--HH--cCCCCC-----------------------------------------
Q 004369 454 LISWTSMITGFANHSLSHQALQLFEDM--LL--AGVRPN----------------------------------------- 488 (758)
Q Consensus 454 ~~~~~~li~~~~~~g~~~~A~~~~~~m--~~--~g~~p~----------------------------------------- 488 (758)
.+.|-.+.......|+.-+++.+|..- .. .|-.|+
T Consensus 884 l~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~ 963 (1238)
T KOG1127|consen 884 LVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGH 963 (1238)
T ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcC
Confidence 455655544444555555555555441 11 111122
Q ss_pred ---HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHH----HHHHHHHcCCHHHHHHHHHHcCCCCCHHHHH
Q 004369 489 ---QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMC----LIDMFVRLGCIEEAFDFIKKMDFEPNEVIWS 561 (758)
Q Consensus 489 ---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~----li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~ 561 (758)
...|........+.+.+..|.+...+...-...+-+...|+. ....+...|.++.|..-+...+..-|..+-.
T Consensus 964 p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~evdEdi~g 1043 (1238)
T KOG1127|consen 964 PQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWMEVDEDIRG 1043 (1238)
T ss_pred cchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchhHHHHHhh
Confidence 333444433344444444444443333221111222233332 2233444455555544444332222333332
Q ss_pred HHHHHHHHcCChhHHHHHHHHHhccCCCCch---hHHHHHHHhhhCCCchhHHHHHHHhh
Q 004369 562 VFIAGCRRHGNMELGFYAAEQLLKLKPKDCE---SYAMLLDIFVSAGRWEDVAVVKNLTR 618 (758)
Q Consensus 562 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~ 618 (758)
+=+.. .-.++++++.+.|++++.+-..+.. ....++......+.-+.|....-+..
T Consensus 1044 t~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~ 1102 (1238)
T KOG1127|consen 1044 TDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVK 1102 (1238)
T ss_pred hhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHH
Confidence 22222 3357888888899998886544333 22333444455566666665544433
No 103
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.50 E-value=5.5e-06 Score=73.93 Aligned_cols=106 Identities=8% Similarity=-0.135 Sum_probs=92.4
Q ss_pred HHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccC
Q 004369 510 GYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLK 587 (758)
Q Consensus 510 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 587 (758)
.+++... .+.|+ .+..+...+...|++++|.+.|+.. ...| +...|..+..++...|++++|...++++++++
T Consensus 14 ~~~~~al---~~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLL---SVDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHH---HcCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 3444443 34455 3556788999999999999999998 6667 67889999999999999999999999999999
Q ss_pred CCCchhHHHHHHHhhhCCCchhHHHHHHHhhhC
Q 004369 588 PKDCESYAMLLDIFVSAGRWEDVAVVKNLTREE 620 (758)
Q Consensus 588 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 620 (758)
|+++..+..++.++...|++++|...++...+.
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998764
No 104
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.49 E-value=2e-05 Score=89.21 Aligned_cols=199 Identities=17% Similarity=0.166 Sum_probs=168.6
Q ss_pred CChHHHHhHHhhhHHhcCCHHHHHHHHHhcCCC--------ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 004369 420 LSDVVVGTALVNMYKKCGRIERASRVFVEMSTR--------TLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVT 491 (758)
Q Consensus 420 ~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 491 (758)
|-+...|-..|......+++++|++++++.... -...|.++++.-...|.-+...++|+++.+. .-....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 445667777777788889999999999887632 2358999999888899889999999999873 223557
Q ss_pred HHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC---CHHHHHHHHHHH
Q 004369 492 FVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP---NEVIWSVFIAGC 567 (758)
Q Consensus 492 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~~~~~~ll~~~ 567 (758)
|..|...|.+.+.+++|.++++.|.++++ .....|...++.+.+..+-+.|..++.++ ..-| ......-.+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 88899999999999999999999999777 56688999999999999999999999887 4334 344566667777
Q ss_pred HHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhhCCC
Q 004369 568 RRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREEKL 622 (758)
Q Consensus 568 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 622 (758)
.++|+.+.+..+|+.++...|.....|..++++=.+.|..+.++.+|++....++
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Confidence 8999999999999999999999999999999999999999999999999988765
No 105
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.48 E-value=0.0005 Score=74.07 Aligned_cols=331 Identities=14% Similarity=0.155 Sum_probs=185.0
Q ss_pred HHhhcCChHHHHHHHhccCCCCcchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHHHHH
Q 004369 219 LYSTCGSLNSAIKAFNRIREKNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQV 298 (758)
Q Consensus 219 ~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 298 (758)
.....|.+++|+.++.+-+. |..|=..|-..|.+++|+++-+.=-+-.++ .||..-..-+...++.+.|.+.
T Consensus 809 LAieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Tyy~yA~~Lear~Di~~Aley 880 (1416)
T KOG3617|consen 809 LAIELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRIHLR---NTYYNYAKYLEARRDIEAALEY 880 (1416)
T ss_pred HHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccceehh---hhHHHHHHHHHhhccHHHHHHH
Confidence 34466889999999987764 333445566689999998886653222222 3444444445556777777777
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHH
Q 004369 299 HSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSHVNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSK 378 (758)
Q Consensus 299 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~ 378 (758)
|+..-.. -..+.. ++. .+......+.+.+.++....|- ..|.. ..|+.+.|+.+|..
T Consensus 881 yEK~~~h----afev~r----mL~--e~p~~~e~Yv~~~~d~~L~~WW---gqYlE----------S~GemdaAl~~Y~~ 937 (1416)
T KOG3617|consen 881 YEKAGVH----AFEVFR----MLK--EYPKQIEQYVRRKRDESLYSWW---GQYLE----------SVGEMDAALSFYSS 937 (1416)
T ss_pred HHhcCCh----HHHHHH----HHH--hChHHHHHHHHhccchHHHHHH---HHHHh----------cccchHHHHHHHHH
Confidence 7643211 111111 111 1233334444555555433321 11222 18999999999987
Q ss_pred hHhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCCCChhHHH
Q 004369 379 LNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMSTRTLISWT 458 (758)
Q Consensus 379 m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~~~~~ 458 (758)
... |-++++..|-.|+.++|.+|-++ ..|....-.|..+|-..|++.+|..+|.+.. ++.
T Consensus 938 A~D---------~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq-----afs 997 (1416)
T KOG3617|consen 938 AKD---------YFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQ-----AFS 997 (1416)
T ss_pred hhh---------hhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH-----HHH
Confidence 654 55667777888999998887653 2366677788999999999999999998765 222
Q ss_pred HHHHHHHhcC---------------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHH---------HHH
Q 004369 459 SMITGFANHS---------------LSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGY---------FEM 514 (758)
Q Consensus 459 ~li~~~~~~g---------------~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~---------~~~ 514 (758)
.-|..+-.++ +.-.|-.+|++. |... .....-|-++|.+.+|+++ ++-
T Consensus 998 nAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g~~~-----~~AVmLYHkAGm~~kALelAF~tqQf~aL~l 1069 (1416)
T KOG3617|consen 998 NAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL---GGYA-----HKAVMLYHKAGMIGKALELAFRTQQFSALDL 1069 (1416)
T ss_pred HHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---chhh-----hHHHHHHHhhcchHHHHHHHHhhcccHHHHH
Confidence 2232222222 122223333321 1111 1112235556666655543 333
Q ss_pred hhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhccC---CC--
Q 004369 515 MQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKMDFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLK---PK-- 589 (758)
Q Consensus 515 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---p~-- 589 (758)
+.++..-..|+...+--.+.+....++++|.+++-... -|.--+..| ...++..-++..+.|.-.. |+
T Consensus 1070 Ia~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar------~~~~AlqlC-~~~nv~vtee~aE~mTp~Kd~~~~e~ 1142 (1416)
T KOG3617|consen 1070 IAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAR------EFSGALQLC-KNRNVRVTEEFAELMTPTKDDMPNEQ 1142 (1416)
T ss_pred HHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHH------HHHHHHHHH-hcCCCchhHHHHHhcCcCcCCCccHH
Confidence 33433334456667777777777777888777765531 122222333 3444555555555553221 22
Q ss_pred -CchhHHHHHHHhhhCCCchhHHHHHH
Q 004369 590 -DCESYAMLLDIFVSAGRWEDVAVVKN 615 (758)
Q Consensus 590 -~~~~~~~l~~~~~~~g~~~~a~~~~~ 615 (758)
.......++..|.++|.+..|.+-|.
T Consensus 1143 ~R~~vLeqvae~c~qQG~Yh~AtKKfT 1169 (1416)
T KOG3617|consen 1143 ERKQVLEQVAELCLQQGAYHAATKKFT 1169 (1416)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHh
Confidence 12356678888888888777765443
No 106
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.47 E-value=0.00025 Score=67.39 Aligned_cols=372 Identities=12% Similarity=0.044 Sum_probs=178.3
Q ss_pred HHHHHHHHhhcCChHHHHHHHhccCC--CCcchHHH-HHHHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHH--c
Q 004369 213 GNSLCSLYSTCGSLNSAIKAFNRIRE--KNVMSWTT-VIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVC--G 287 (758)
Q Consensus 213 ~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~-li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~--~ 287 (758)
.+.|...|-...++..|...++.+.. |...-|.. -...+-+.+.+.+|+++...|... |+...-..-+.+. -
T Consensus 47 LSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkY 123 (459)
T KOG4340|consen 47 LSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKY 123 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhc
Confidence 33444455555555555555555543 22222221 123455667777777777766542 2211111111111 1
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCC----CCeeechhHHHHHhhhchhhhchh
Q 004369 288 TMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSH----VNLVTWNAMIAGHAQMMDLAKDDL 363 (758)
Q Consensus 288 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~~~~~~~~l 363 (758)
..+++..+..+.++... +.+..+.+.......+.|+++.|.+-|+...+ ...+.||.-+..|.
T Consensus 124 se~Dl~g~rsLveQlp~---en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~---------- 190 (459)
T KOG4340|consen 124 SEGDLPGSRSLVEQLPS---ENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYS---------- 190 (459)
T ss_pred ccccCcchHHHHHhccC---CCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHh----------
Confidence 22344444444433221 12333334444445566666666666665544 23344554444433
Q ss_pred hcCCChhHHHHHHHHhHhCCCCCCHHH----HHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCH
Q 004369 364 SAHNGGTEALSIFSKLNSSGMKPDLYT----FSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRI 439 (758)
Q Consensus 364 ~~~g~~~~A~~l~~~m~~~g~~p~~~t----~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~ 439 (758)
.++++.|++...++++.|++-.+.. -.-.+. ...+.....++.. .-+..+|.-...+.+.|+.
T Consensus 191 --~~qyasALk~iSEIieRG~r~HPElgIGm~tegiD----vrsvgNt~~lh~S-------al~eAfNLKaAIeyq~~n~ 257 (459)
T KOG4340|consen 191 --SRQYASALKHISEIIERGIRQHPELGIGMTTEGID----VRSVGNTLVLHQS-------ALVEAFNLKAAIEYQLRNY 257 (459)
T ss_pred --hhhHHHHHHHHHHHHHhhhhcCCccCccceeccCc----hhcccchHHHHHH-------HHHHHhhhhhhhhhhcccH
Confidence 4566666666666666554321110 000000 0000000000000 0112333334456788999
Q ss_pred HHHHHHHHhcCCC-----ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHH
Q 004369 440 ERASRVFVEMSTR-----TLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEM 514 (758)
Q Consensus 440 ~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 514 (758)
+.|.+.+..|+.+ |++|...+.-. -..+++.+..+-+.-+...+. -...||..++-.|++..-++-|-.++.+
T Consensus 258 eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 258 EAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 9999999999854 66776554322 123445555555555554432 2356899999999999999988887754
Q ss_pred hhhhcCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHcCChhH----HHHHHHHHhccCC
Q 004369 515 MQKEYKIKPVMDHYMCLIDMFVRL-GCIEEAFDFIKKMDFEPNEVIWSVFIAGC-RRHGNMEL----GFYAAEQLLKLKP 588 (758)
Q Consensus 515 ~~~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~p~~~~~~~ll~~~-~~~g~~~~----a~~~~~~~~~~~p 588 (758)
-....-.-.+...|+ |++++.-+ -..++|++-++.....-....-..-+..- .++.+-++ +.+-+++.+++-
T Consensus 336 n~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y- 413 (459)
T KOG4340|consen 336 NAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY- 413 (459)
T ss_pred CcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH-
Confidence 321000011223333 34444433 35666666555441000000000111111 12222222 223344444433
Q ss_pred CCchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369 589 KDCESYAMLLDIFVSAGRWEDVAVVKNLTRE 619 (758)
Q Consensus 589 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 619 (758)
..+...-++.|++..++.-+.+.|....+
T Consensus 414 --LPVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 414 --LPVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred --HHHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 23556778889999999999999887665
No 107
>PLN02789 farnesyltranstransferase
Probab=98.46 E-value=5.4e-05 Score=76.89 Aligned_cols=217 Identities=12% Similarity=0.053 Sum_probs=155.4
Q ss_pred CCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcC-CHHHHHH
Q 004369 366 HNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCG-RIERASR 444 (758)
Q Consensus 366 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g-~~~~A~~ 444 (758)
.+++.+|+..|+..... .+..++|..+...+++.. +.+..+|+.....+.+.| ++++++.
T Consensus 33 ~~~~~~a~~~~ra~l~~------------------~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~ 93 (320)
T PLN02789 33 TPEFREAMDYFRAVYAS------------------DERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELD 93 (320)
T ss_pred CHHHHHHHHHHHHHHHc------------------CCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHH
Confidence 45566666666665543 345567777777776653 334556666666666777 5789999
Q ss_pred HHHhcC---CCChhHHHHHHHHHHhcCCH--HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhc
Q 004369 445 VFVEMS---TRTLISWTSMITGFANHSLS--HQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEY 519 (758)
Q Consensus 445 ~~~~~~---~~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 519 (758)
.++++. .++..+|+.....+.+.|+. ++++.+++++.+.. .-|..+|.....++.+.|+++++++.++++.+.
T Consensus 94 ~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~- 171 (320)
T PLN02789 94 FAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE- 171 (320)
T ss_pred HHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-
Confidence 988876 34556787666566666653 67899999998753 224678888888888999999999999999873
Q ss_pred CCCCCHHHHHHHHHHHHHc---CC----HHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHc----CChhHHHHHHHHHhcc
Q 004369 520 KIKPVMDHYMCLIDMFVRL---GC----IEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRH----GNMELGFYAAEQLLKL 586 (758)
Q Consensus 520 ~~~p~~~~~~~li~~~~~~---g~----~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~----g~~~~a~~~~~~~~~~ 586 (758)
-.-+...|+.....+.+. |. .++++++..++ ...| |...|+.+...+... ++..+|...+.+++..
T Consensus 172 -d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~ 250 (320)
T PLN02789 172 -DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK 250 (320)
T ss_pred -CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcc
Confidence 233456666666555554 22 24677777555 6677 678899999998874 3456788999999999
Q ss_pred CCCCchhHHHHHHHhhhC
Q 004369 587 KPKDCESYAMLLDIFVSA 604 (758)
Q Consensus 587 ~p~~~~~~~~l~~~~~~~ 604 (758)
+|.++.+...|+++|+..
T Consensus 251 ~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 251 DSNHVFALSDLLDLLCEG 268 (320)
T ss_pred cCCcHHHHHHHHHHHHhh
Confidence 999999999999999864
No 108
>PF12854 PPR_1: PPR repeat
Probab=98.45 E-value=2.1e-07 Score=59.02 Aligned_cols=33 Identities=30% Similarity=0.584 Sum_probs=25.4
Q ss_pred CCCCchhHHHHHHHHhhcCCChHHHHHHHccCC
Q 004369 104 GSHQDFFVMTFLVNVYGKCGNMEEAQKVFDNLP 136 (758)
Q Consensus 104 g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~ 136 (758)
|+.||..+||.||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 667777777777777777777777777777774
No 109
>PF12854 PPR_1: PPR repeat
Probab=98.43 E-value=4e-07 Score=57.74 Aligned_cols=32 Identities=31% Similarity=0.604 Sum_probs=26.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 004369 520 KIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM 551 (758)
Q Consensus 520 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 551 (758)
|+.||..+|++||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 67788888888888888888888888888877
No 110
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.41 E-value=8e-05 Score=81.87 Aligned_cols=387 Identities=10% Similarity=0.013 Sum_probs=224.8
Q ss_pred CCCCC-hhHHHHHHHHHhhcCChHHHHHHHhccCC---CCcchHHHHHHHHhhCCChhhHHHHHHHHHHCC-CCCChhhH
Q 004369 205 QTEDD-TSVGNSLCSLYSTCGSLNSAIKAFNRIRE---KNVMSWTTVIGACGENGEAVQGLRFFSKMLSEG-IQPNEFTL 279 (758)
Q Consensus 205 g~~~~-~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~ 279 (758)
.+.++ ...|..|...|...-++..|.+.|++.-+ -|..++......|++...++.|..+.-.--+.. ...-...+
T Consensus 486 rld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW 565 (1238)
T KOG1127|consen 486 RLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENW 565 (1238)
T ss_pred hcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhh
Confidence 34444 35788899999988899999999998876 356788899999999999999999833222110 00011112
Q ss_pred HHHHHHHcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCeeechhHHHHHhhhchhh
Q 004369 280 TSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSHVNLVTWNAMIAGHAQMMDLA 359 (758)
Q Consensus 280 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~ 359 (758)
...--.+.+.++...+..-|....+.. +.|...|..|..+|.++|++..|.++|++...-++.+|-.-...-..
T Consensus 566 ~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~----- 639 (1238)
T KOG1127|consen 566 VQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVM----- 639 (1238)
T ss_pred hhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHH-----
Confidence 223333455667777777777776655 56888999999999999999999999988876444443322111111
Q ss_pred hchhhcCCChhHHHHHHHHhHhC------CCCCCHHHHHHHHHHHhcccchHHH-------HHHHHHHHHcCCCChHHHH
Q 004369 360 KDDLSAHNGGTEALSIFSKLNSS------GMKPDLYTFSSILTICSRLVALEQG-------EQIHALTLKTGFLSDVVVG 426 (758)
Q Consensus 360 ~~~l~~~g~~~~A~~l~~~m~~~------g~~p~~~t~~~ll~a~~~~~~~~~a-------~~i~~~~~~~~~~~~~~~~ 426 (758)
.|..|.+.+|+..+...... +..--..++..+...+...|-...+ .+.+.-........+...|
T Consensus 640 ---ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~W 716 (1238)
T KOG1127|consen 640 ---ECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQW 716 (1238)
T ss_pred ---HHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 23389999999999887542 1111112222222222222222222 2222222222222222222
Q ss_pred hHHhhhHHhcCCHHHHHHHHHhcCCCChh--HHHHHHHH-HHhcCCH---H---HHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004369 427 TALVNMYKKCGRIERASRVFVEMSTRTLI--SWTSMITG-FANHSLS---H---QALQLFEDMLLAGVRPNQVTFVGALA 497 (758)
Q Consensus 427 ~~Li~~y~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~-~~~~g~~---~---~A~~~~~~m~~~g~~p~~~t~~~ll~ 497 (758)
-.+. .|..+|-... ++.+ .+..++.. +...+.. + -+.+.+-.-++ ...+..+|..+..
T Consensus 717 i~as----------dac~~f~q~e-~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGi 783 (1238)
T KOG1127|consen 717 IVAS----------DACYIFSQEE-PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGI 783 (1238)
T ss_pred HHHh----------HHHHHHHHhc-ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhH
Confidence 2222 2333444333 3221 12222222 2222221 1 11111111111 1222334444433
Q ss_pred HHhc-------cc-cHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHH
Q 004369 498 ACSN-------AG-MVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGC 567 (758)
Q Consensus 498 a~~~-------~g-~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~ 567 (758)
.|.+ .+ +...|...+...++. ...+...|+.|.- +...|++.-|..-|-+- -..| ...+|..+.-.|
T Consensus 784 nylr~f~~l~et~~~~~~Ai~c~KkaV~L--~ann~~~WnaLGV-lsg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~ 860 (1238)
T KOG1127|consen 784 NYLRYFLLLGETMKDACTAIRCCKKAVSL--CANNEGLWNALGV-LSGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLV 860 (1238)
T ss_pred HHHHHHHHcCCcchhHHHHHHHHHHHHHH--hhccHHHHHHHHH-hhccchhhhhhhhhhhhhhccccchhheeccceeE
Confidence 3322 11 234566677666541 2233455555544 46667777777766554 3445 677899999889
Q ss_pred HHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHH
Q 004369 568 RRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNL 616 (758)
Q Consensus 568 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 616 (758)
.+..|++-|..++.++..++|.|...+...+-+-...|+.-++..++..
T Consensus 861 l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 861 LENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred EecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999988888888777888888887777766
No 111
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=0.00098 Score=69.02 Aligned_cols=167 Identities=19% Similarity=0.128 Sum_probs=109.2
Q ss_pred HhhhHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccccHHH
Q 004369 429 LVNMYKKCGRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQ-VTFVGALAACSNAGMVYE 507 (758)
Q Consensus 429 Li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~ 507 (758)
+...|.+.++++.|...|++....... -....+....++++...+...- +.|+. .-...-...+.+.|++..
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~ 376 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPE 376 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHH
Confidence 445666677777777777764421100 0111222334455554444433 34442 112222456778899999
Q ss_pred HHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHhc
Q 004369 508 ALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEPNE-VIWSVFIAGCRRHGNMELGFYAAEQLLK 585 (758)
Q Consensus 508 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 585 (758)
|...|.++++. .+-|...|+...-+|.+.|.+.+|++=.+.. ...|+. ..|.-=..++....+++.|.+.|.+.++
T Consensus 377 Av~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 377 AVKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999988873 3556788888889999999998888876665 556643 3344445556667789999999999999
Q ss_pred cCCCCchhHHHHHHHhhhC
Q 004369 586 LKPKDCESYAMLLDIFVSA 604 (758)
Q Consensus 586 ~~p~~~~~~~~l~~~~~~~ 604 (758)
.+|++......+.+++...
T Consensus 455 ~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 455 LDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred cCchhHHHHHHHHHHHHHh
Confidence 9999988888887777654
No 112
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.40 E-value=0.00033 Score=73.89 Aligned_cols=193 Identities=9% Similarity=-0.002 Sum_probs=110.3
Q ss_pred HHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCCC-----Ch--hHHHHHHHHHH
Q 004369 393 SILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMSTR-----TL--ISWTSMITGFA 465 (758)
Q Consensus 393 ~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~-----~~--~~~~~li~~~~ 465 (758)
.+...+...|++++|.+.++...+.. +.+...+..+...|...|++++|...+++..+. +. ..|..+...+.
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~ 197 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL 197 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence 34445566677777777777666654 344566677777788888888888888775531 21 24556777788
Q ss_pred hcCCHHHHHHHHHHHHHcCC-CCCHHHH-H--HHHHHHhccccHHHHHHH--HHHhhhhcCC-CCCHHHHHHHHHHHHHc
Q 004369 466 NHSLSHQALQLFEDMLLAGV-RPNQVTF-V--GALAACSNAGMVYEALGY--FEMMQKEYKI-KPVMDHYMCLIDMFVRL 538 (758)
Q Consensus 466 ~~g~~~~A~~~~~~m~~~g~-~p~~~t~-~--~ll~a~~~~g~~~~a~~~--~~~~~~~~~~-~p~~~~~~~li~~~~~~ 538 (758)
..|++++|+.++++...... .+..... + .++.-+...|..+.+.+. .........- ..........+.++...
T Consensus 198 ~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 277 (355)
T cd05804 198 ERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGA 277 (355)
T ss_pred HCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcC
Confidence 88888888888888754322 1112111 1 223333334433322222 1111110000 11112223566777888
Q ss_pred CCHHHHHHHHHHc--CCCC---C------HHHHHHHHHHHHHcCChhHHHHHHHHHhcc
Q 004369 539 GCIEEAFDFIKKM--DFEP---N------EVIWSVFIAGCRRHGNMELGFYAAEQLLKL 586 (758)
Q Consensus 539 g~~~~A~~~~~~m--~~~p---~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 586 (758)
|+.++|..+++.+ .... . ....-....++...|+.+.|.+.+..++.+
T Consensus 278 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 278 GDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred CCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999998877 1111 1 112222334456789999999998888764
No 113
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.39 E-value=0.00017 Score=86.44 Aligned_cols=323 Identities=11% Similarity=-0.046 Sum_probs=202.4
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCC----CC---eeechh-----HHHHHhhh
Q 004369 288 TMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSH----VN---LVTWNA-----MIAGHAQM 355 (758)
Q Consensus 288 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~---~~~~~~-----li~~~~~~ 355 (758)
..|..+........+.......+..........+...|++++|..++..... .+ ...... +-..+..
T Consensus 386 ~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~- 464 (903)
T PRK04841 386 NQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIN- 464 (903)
T ss_pred hcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHh-
Confidence 3456666555555432111122233334455566778999998888875422 11 111111 1112233
Q ss_pred chhhhchhhcCCChhHHHHHHHHhHhCCCCCCH----HHHHHHHHHHhcccchHHHHHHHHHHHHc----CCC-ChHHHH
Q 004369 356 MDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDL----YTFSSILTICSRLVALEQGEQIHALTLKT----GFL-SDVVVG 426 (758)
Q Consensus 356 ~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~~~~~~a~~i~~~~~~~----~~~-~~~~~~ 426 (758)
.|++++|...+++....-...+. .....+...+...|+++.|...+...... |.. ......
T Consensus 465 ----------~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~ 534 (903)
T PRK04841 465 ----------DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSL 534 (903)
T ss_pred ----------CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHH
Confidence 89999999999987763111222 23344555667889999999988777642 211 123455
Q ss_pred hHHhhhHHhcCCHHHHHHHHHhcCC-------C----ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCC--HHH
Q 004369 427 TALVNMYKKCGRIERASRVFVEMST-------R----TLISWTSMITGFANHSLSHQALQLFEDMLLAG--VRPN--QVT 491 (758)
Q Consensus 427 ~~Li~~y~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~--~~t 491 (758)
..+...+...|++++|...+++... + ....+..+...+...|++++|...+++..... ..+. ...
T Consensus 535 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 614 (903)
T PRK04841 535 LQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQC 614 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHH
Confidence 6677788899999999998876431 1 12234455566777899999999999876531 1222 234
Q ss_pred HHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHH-----HHHHHHHHHcCCHHHHHHHHHHcCC-C-CCH----HHH
Q 004369 492 FVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHY-----MCLIDMFVRLGCIEEAFDFIKKMDF-E-PNE----VIW 560 (758)
Q Consensus 492 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~-~-p~~----~~~ 560 (758)
+..+.......|++++|...++.+............+ ......+...|+.++|...+..... . ... ..+
T Consensus 615 ~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~ 694 (903)
T PRK04841 615 LAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQW 694 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHH
Confidence 4445556778999999999998875421111111111 1122445668999999999877621 1 111 124
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHhccC------CCCchhHHHHHHHhhhCCCchhHHHHHHHhhhCC
Q 004369 561 SVFIAGCRRHGNMELGFYAAEQLLKLK------PKDCESYAMLLDIFVSAGRWEDVAVVKNLTREEK 621 (758)
Q Consensus 561 ~~ll~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 621 (758)
..+..++...|+.++|...++++++.. +....++..++.+|...|+.++|...+....+..
T Consensus 695 ~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 695 RNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 566777888999999999999988752 1223467788999999999999999999887643
No 114
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.36 E-value=4.3e-05 Score=72.17 Aligned_cols=157 Identities=11% Similarity=0.109 Sum_probs=116.7
Q ss_pred hhhHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHH
Q 004369 430 VNMYKKCGRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEAL 509 (758)
Q Consensus 430 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 509 (758)
+-.|.+.|+++......+.+..+. ..|...++.++++..+++..+.. +.|...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 456777888777655443332211 01223566788888888877742 345678888888999999999999
Q ss_pred HHHHHhhhhcCCCCCHHHHHHHHHHH-HHcCC--HHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHh
Q 004369 510 GYFEMMQKEYKIKPVMDHYMCLIDMF-VRLGC--IEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLL 584 (758)
Q Consensus 510 ~~~~~~~~~~~~~p~~~~~~~li~~~-~~~g~--~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 584 (758)
..|+...+. .+.+...+..+..++ .+.|+ .++|.+++++. ...| +...+..+...+...|++++|...+++++
T Consensus 94 ~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 94 LAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999988762 233577888888864 67787 59999999998 6677 67788999999999999999999999999
Q ss_pred ccCCCCchhHHHH
Q 004369 585 KLKPKDCESYAML 597 (758)
Q Consensus 585 ~~~p~~~~~~~~l 597 (758)
++.|.+..-+..+
T Consensus 172 ~l~~~~~~r~~~i 184 (198)
T PRK10370 172 DLNSPRVNRTQLV 184 (198)
T ss_pred hhCCCCccHHHHH
Confidence 9998765544333
No 115
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.32 E-value=6e-05 Score=84.43 Aligned_cols=132 Identities=14% Similarity=0.015 Sum_probs=101.0
Q ss_pred CCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCC-HHHHH
Q 004369 485 VRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPV-MDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEPN-EVIWS 561 (758)
Q Consensus 485 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~ 561 (758)
...+...+..|.....+.|.+++|..+++...+ +.|+ ......++..+.+.+++++|+..+++. ...|+ .....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~---~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~ 158 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQ---RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREIL 158 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh---hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHH
Confidence 344466777777777888888888888887754 4565 455666777888888888888888887 66674 45566
Q ss_pred HHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369 562 VFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTRE 619 (758)
Q Consensus 562 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 619 (758)
.+..++.+.|++++|..+|++++..+|+++.++..++.++...|+.++|...++...+
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6777777888888888888888887788888888888888888888888888887765
No 116
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.30 E-value=5.9e-05 Score=74.25 Aligned_cols=182 Identities=11% Similarity=0.030 Sum_probs=127.7
Q ss_pred CCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCC-C-hHHHHhHHhhhHHhcCCHHHHHHHHHhcCCC---Chh---HH
Q 004369 386 PDLYTFSSILTICSRLVALEQGEQIHALTLKTGFL-S-DVVVGTALVNMYKKCGRIERASRVFVEMSTR---TLI---SW 457 (758)
Q Consensus 386 p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~-~-~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~---~~~---~~ 457 (758)
.....+......+...|+++.|...+..+.+.... + ....+..+...|.+.|++++|...|+++.+. +.. .+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 35566777778889999999999999998875321 1 1246678889999999999999999998632 222 45
Q ss_pred HHHHHHHHhc--------CCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHH
Q 004369 458 TSMITGFANH--------SLSHQALQLFEDMLLAGVRPNQV-TFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHY 528 (758)
Q Consensus 458 ~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 528 (758)
..+..++.+. |+.++|++.|+++.+. .|+.. ....+... +.... .. . ...
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~----~~~~~------~~-~--------~~~ 169 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM----DYLRN------RL-A--------GKE 169 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH----HHHHH------HH-H--------HHH
Confidence 5555666654 7899999999999874 55532 22111111 00000 00 0 112
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCC
Q 004369 529 MCLIDMFVRLGCIEEAFDFIKKM----DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKP 588 (758)
Q Consensus 529 ~~li~~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 588 (758)
..+.+.|.+.|++++|+..+++. +-.| ....|..+..++...|++++|...++.+....|
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 35677889999999999999887 2233 356788999999999999999998888776555
No 117
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.30 E-value=1.6e-05 Score=84.56 Aligned_cols=189 Identities=11% Similarity=0.098 Sum_probs=129.5
Q ss_pred CCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004369 418 GFLSDVVVGTALVNMYKKCGRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALA 497 (758)
Q Consensus 418 ~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 497 (758)
+++|-...-..+.+.+.++|-...|..+|++.. .|.-.|..|+..|+..+|..+..+-.+ -+||+.-|..+.+
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 456666777788888899999999999998764 677788888999988899888888777 4788888888888
Q ss_pred HHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhH
Q 004369 498 ACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMEL 575 (758)
Q Consensus 498 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~ 575 (758)
......-+++|+++++....+ .-..+.....+.++++++.+.|+.- .+.| -..+|-.+..+..+.++++.
T Consensus 466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 887777788888888765442 0111112222355666666666543 4444 44556666666666666666
Q ss_pred HHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhhCC
Q 004369 576 GFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREEK 621 (758)
Q Consensus 576 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 621 (758)
|.+.|...+.++|++...++.++-+|.+.|+-.+|...+++..+-+
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 6666666666666666666666666666666666666666655433
No 118
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.29 E-value=6.4e-05 Score=70.70 Aligned_cols=117 Identities=13% Similarity=0.051 Sum_probs=60.1
Q ss_pred HHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCC
Q 004369 495 ALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGN 572 (758)
Q Consensus 495 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~ 572 (758)
.+....+.|++.+|...|.+... .-++|.+.|+.+.-.|.+.|++++|..-|.+. .+.| +....+.|...+.-.|+
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd 183 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGD 183 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCC
Confidence 44444455555555555555543 33444555555555555555555555555444 3333 33444555555555555
Q ss_pred hhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHH
Q 004369 573 MELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVV 613 (758)
Q Consensus 573 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 613 (758)
.+.|+.++.......+.|+.+-..|+-+....|++++|..+
T Consensus 184 ~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 184 LEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 55555555555555555555555555555555555555443
No 119
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.28 E-value=0.0082 Score=62.34 Aligned_cols=147 Identities=17% Similarity=0.137 Sum_probs=77.8
Q ss_pred hhHHHHHHHHhHhC-CCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCC-hHHHHhHHhhhHHhcCCHHHHHHHH
Q 004369 369 GTEALSIFSKLNSS-GMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLS-DVVVGTALVNMYKKCGRIERASRVF 446 (758)
Q Consensus 369 ~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~-~~~~~~~Li~~y~~~g~~~~A~~~~ 446 (758)
.+...+.+.++... .+.|+ .+|...++...+..-++.|+.+|..+.+.+..+ ++.++++++.-|| .++.+-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHH
Confidence 44444555554432 22332 345555666666666666677776666665555 5666666666665 35556666666
Q ss_pred HhcCC--CC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccccHHHHHHHHHHhhh
Q 004369 447 VEMST--RT-LISWTSMITGFANHSLSHQALQLFEDMLLAGVRPN--QVTFVGALAACSNAGMVYEALGYFEMMQK 517 (758)
Q Consensus 447 ~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 517 (758)
+--.. .| +.--+..+.-+...++-..|..+|++....++.|| ...|..+|.-=+.-|++..+.++-+++..
T Consensus 425 eLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 425 ELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 54331 12 22223344444555555555556665555544444 23455555555555555555555544443
No 120
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.28 E-value=5.9e-05 Score=71.56 Aligned_cols=301 Identities=15% Similarity=0.097 Sum_probs=164.3
Q ss_pred HHHHHHHHcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCC--CCeeechhH-HHHHhhh
Q 004369 279 LTSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSH--VNLVTWNAM-IAGHAQM 355 (758)
Q Consensus 279 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~l-i~~~~~~ 355 (758)
+++++..+.+..++..+.+++..-.+.. +.+....+.|...|....++..|-..++++.. |...-|... ...+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~- 90 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYK- 90 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHH-
Confidence 4444444444555555555554444332 22444456666677777777777777776644 221111110 112222
Q ss_pred chhhhchhhcCCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHH--hcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhH
Q 004369 356 MDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILTIC--SRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMY 433 (758)
Q Consensus 356 ~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~--~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y 433 (758)
.+.+..|+.+...|... |+...-..-+.+. -+.+++..++.+.+..... .+..+.+...-..
T Consensus 91 ----------A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCll 154 (459)
T KOG4340|consen 91 ----------ACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLL 154 (459)
T ss_pred ----------hcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---Cccchhccchhee
Confidence 66667777777666542 2221111111111 2334444454444443321 1333344444445
Q ss_pred HhcCCHHHHHHHHHhcCCC----ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHH
Q 004369 434 KKCGRIERASRVFVEMSTR----TLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEAL 509 (758)
Q Consensus 434 ~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 509 (758)
.+.|+.+.|.+-|+...+- ....||.-+. ..+.|+++.|+++..++.++|++-.... ..|...++.
T Consensus 155 ykegqyEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPEl---------gIGm~tegi 224 (459)
T KOG4340|consen 155 YKEGQYEAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPEL---------GIGMTTEGI 224 (459)
T ss_pred eccccHHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCcc---------CccceeccC
Confidence 5677777777777765532 3355654443 3445677777777777777765422110 001111111
Q ss_pred H---------HHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcC----CCCCHHHHHHHHHHHHHcCChhHH
Q 004369 510 G---------YFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKMD----FEPNEVIWSVFIAGCRRHGNMELG 576 (758)
Q Consensus 510 ~---------~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~p~~~~~~~ll~~~~~~g~~~~a 576 (758)
. +..... ++.+|.-...+.+.|+++.|.+.+..|| .+.|++|...+.-. -..++...+
T Consensus 225 DvrsvgNt~~lh~Sal--------~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g 295 (459)
T KOG4340|consen 225 DVRSVGNTLVLHQSAL--------VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEG 295 (459)
T ss_pred chhcccchHHHHHHHH--------HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCcccc
Confidence 0 111000 1223333345678899999999999993 33477776655432 234667777
Q ss_pred HHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHH
Q 004369 577 FYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNL 616 (758)
Q Consensus 577 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 616 (758)
.+-+.-+++++|-.++++..+.-+|++..-++-|..+.-+
T Consensus 296 ~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 296 FEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 8888888999998889999999999999999888877654
No 121
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.27 E-value=0.00033 Score=71.74 Aligned_cols=119 Identities=15% Similarity=0.156 Sum_probs=91.3
Q ss_pred HHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCC-HHHHHHHHHHHHHcCChhH
Q 004369 498 ACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEPN-EVIWSVFIAGCRRHGNMEL 575 (758)
Q Consensus 498 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~ 575 (758)
.....|.+++|+..+..+.+ ..+-|+..+....+.+.+.++.++|.+.++++ ...|+ ...+-++..++.+.|+..+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHH
Confidence 34567788888888888765 33344566667778888888888888888887 66675 5667778888888888888
Q ss_pred HHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhh
Q 004369 576 GFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTR 618 (758)
Q Consensus 576 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 618 (758)
|...++.....+|+|+..|..|+.+|...|+..++...+.++-
T Consensus 393 ai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 393 AIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 8888888888888888888888888888887777776665543
No 122
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.25 E-value=2.2e-05 Score=83.63 Aligned_cols=184 Identities=12% Similarity=0.114 Sum_probs=91.6
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCC
Q 004369 307 YASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSHVNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKP 386 (758)
Q Consensus 307 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p 386 (758)
++|-......+...+.++|-...|..+|+++ ..|.-.|-+|.. .|+..+|..+..+-.+ -+|
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~-----------lg~~~kaeei~~q~le--k~~ 455 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLL-----------LGQHGKAEEINRQELE--KDP 455 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHH-----------hcccchHHHHHHHHhc--CCC
Confidence 4555566666777777788888888877765 346667777777 7777777776666555 255
Q ss_pred CHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHH
Q 004369 387 DLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMSTR---TLISWTSMITG 463 (758)
Q Consensus 387 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~ 463 (758)
|..-|..+.....+..-+++|.++.++.... .-..+.......++++++.+.|+.-.+- -..+|-....+
T Consensus 456 d~~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ 528 (777)
T KOG1128|consen 456 DPRLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCA 528 (777)
T ss_pred cchhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHH
Confidence 5555555555444444444444444332211 1111111112234444444444432211 22344444444
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhh
Q 004369 464 FANHSLSHQALQLFEDMLLAGVRPN-QVTFVGALAACSNAGMVYEALGYFEMMQK 517 (758)
Q Consensus 464 ~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 517 (758)
..+.++++.|.+.|..-.. ..|| ...|+.+-.+|.+.++-.+|...+.+..+
T Consensus 529 ALqlek~q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK 581 (777)
T KOG1128|consen 529 ALQLEKEQAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK 581 (777)
T ss_pred HHHHhhhHHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh
Confidence 4444444444444444333 2333 22344444444444444444444444433
No 123
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.21 E-value=3.5e-05 Score=68.33 Aligned_cols=96 Identities=20% Similarity=0.297 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhh
Q 004369 525 MDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFV 602 (758)
Q Consensus 525 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 602 (758)
......+...+...|++++|.+.+++. ...| +...|..+...+...|+++.|...++++++.+|+++..+..++.+|.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 455667777888888888888888887 4455 56778888888888888889998888888888888888888999999
Q ss_pred hCCCchhHHHHHHHhhhC
Q 004369 603 SAGRWEDVAVVKNLTREE 620 (758)
Q Consensus 603 ~~g~~~~a~~~~~~m~~~ 620 (758)
..|++++|.+.++...+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 97 ALGEPESALKALDLAIEI 114 (135)
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999998888877763
No 124
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.20 E-value=0.00035 Score=79.69 Aligned_cols=233 Identities=17% Similarity=0.198 Sum_probs=179.5
Q ss_pred CCC-HHHHHHHHHHHhcccchHHHHHHHHHHHHc-CCC---ChHHHHhHHhhhHHhcCCHHHHHHHHHhcCCC-C-hhHH
Q 004369 385 KPD-LYTFSSILTICSRLVALEQGEQIHALTLKT-GFL---SDVVVGTALVNMYKKCGRIERASRVFVEMSTR-T-LISW 457 (758)
Q Consensus 385 ~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-~~~---~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~-~-~~~~ 457 (758)
.|| ...|-..|.-..+.++.+.|+++.+++++. ++. --.-+|.+++++-..-|.-+...++|++..+- | ...|
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~ 1533 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVH 1533 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHH
Confidence 354 456777788888999999999999988764 111 12457888888888888889999999998754 3 3578
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHH
Q 004369 458 TSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVR 537 (758)
Q Consensus 458 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 537 (758)
..|...|.+.+..++|.+++++|.+. +.-....|...+..+.+...-+.|..++.++.+...-.-.+......+++-.+
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 99999999999999999999999986 55567789999999999999999999999987632222235556677888889
Q ss_pred cCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccC--CCCchhHHH-HHHHhhhCCCchhHHH
Q 004369 538 LGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLK--PKDCESYAM-LLDIFVSAGRWEDVAV 612 (758)
Q Consensus 538 ~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~-l~~~~~~~g~~~~a~~ 612 (758)
.|+.+.+..+|+.. .-.| ....|+.++..-.+||+.+-+..+|++++.+. |...-.+.- ....=.+.|+-+.+..
T Consensus 1613 ~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~ 1692 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEY 1692 (1710)
T ss_pred cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHH
Confidence 99999999999987 3334 57789999999999999999999999999876 444444333 3333344466666655
Q ss_pred HHHHhh
Q 004369 613 VKNLTR 618 (758)
Q Consensus 613 ~~~~m~ 618 (758)
+..++.
T Consensus 1693 VKarA~ 1698 (1710)
T KOG1070|consen 1693 VKARAK 1698 (1710)
T ss_pred HHHHHH
Confidence 554443
No 125
>PLN02789 farnesyltranstransferase
Probab=98.19 E-value=0.00024 Score=72.21 Aligned_cols=188 Identities=12% Similarity=0.112 Sum_probs=136.6
Q ss_pred HHhhhHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccc
Q 004369 428 ALVNMYKKCGRIERASRVFVEMSTR---TLISWTSMITGFANHS-LSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAG 503 (758)
Q Consensus 428 ~Li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 503 (758)
.+-..+.+.++.++|+...+++... +..+|+.....+...| ++++++..++++.+...+ +..+|..-...+.+.|
T Consensus 42 ~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~ 120 (320)
T PLN02789 42 YFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLG 120 (320)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcC
Confidence 3334455667888999998887643 4457777666777777 579999999999985322 3445655544455566
Q ss_pred c--HHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHc---CCh---
Q 004369 504 M--VYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRH---GNM--- 573 (758)
Q Consensus 504 ~--~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~---g~~--- 573 (758)
. .+++..+++.+.+ .-+-+...|+....++.+.|++++|++.++++ ...| |...|+.....+.+. |..
T Consensus 121 ~~~~~~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~ 198 (320)
T PLN02789 121 PDAANKELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAM 198 (320)
T ss_pred chhhHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccccccccc
Confidence 5 3677888888875 22345778888889999999999999999998 5555 678898888777655 222
Q ss_pred -hHHHHHHHHHhccCCCCchhHHHHHHHhhhC----CCchhHHHHHHHhh
Q 004369 574 -ELGFYAAEQLLKLKPKDCESYAMLLDIFVSA----GRWEDVAVVKNLTR 618 (758)
Q Consensus 574 -~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~a~~~~~~m~ 618 (758)
+.+.....++++.+|+|..+|..+..+|... ++..+|.++.....
T Consensus 199 ~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~ 248 (320)
T PLN02789 199 RDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVL 248 (320)
T ss_pred HHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhh
Confidence 4677888899999999999999999999873 34455666655543
No 126
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.18 E-value=5.5e-05 Score=71.15 Aligned_cols=134 Identities=16% Similarity=0.095 Sum_probs=111.3
Q ss_pred CCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc--CCCCCHHHHHH
Q 004369 485 VRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM--DFEPNEVIWSV 562 (758)
Q Consensus 485 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ 562 (758)
..|+......+-.++...|+-+....+...... ....|......++....+.|++.+|...+++. .-.||...|+.
T Consensus 62 ~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~ 139 (257)
T COG5010 62 RNPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNL 139 (257)
T ss_pred cCcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhH
Confidence 355433335555677778888888877777643 33445566677999999999999999999999 44458999999
Q ss_pred HHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhhC
Q 004369 563 FIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREE 620 (758)
Q Consensus 563 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 620 (758)
+.-+|-+.|++++|...+.+++++.|.++..+..|+-.|.-.|+.+.|..++......
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~ 197 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS 197 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999887753
No 127
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.13 E-value=8.3e-05 Score=77.35 Aligned_cols=215 Identities=14% Similarity=0.092 Sum_probs=146.9
Q ss_pred cccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCe---eechhHHHHHhhhchhhhchh
Q 004369 287 GTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSHVNL---VTWNAMIAGHAQMMDLAKDDL 363 (758)
Q Consensus 287 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~~~~~li~~~~~~~~~~~~~l 363 (758)
.+.|++..|.-.|+..++.. +.+...|--|...-...++-..|+..+.+..+-|+ ...-+|.-.|..
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytN--------- 365 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTN--------- 365 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhh---------
Confidence 34566777777777776665 55667777777777777777777777776655333 344444556666
Q ss_pred hcCCChhHHHHHHHHhHhCCCC--------CCHHHHHHHHHHHhcccchHHHHHHHHH-HHHcCCCChHHHHhHHhhhHH
Q 004369 364 SAHNGGTEALSIFSKLNSSGMK--------PDLYTFSSILTICSRLVALEQGEQIHAL-TLKTGFLSDVVVGTALVNMYK 434 (758)
Q Consensus 364 ~~~g~~~~A~~l~~~m~~~g~~--------p~~~t~~~ll~a~~~~~~~~~a~~i~~~-~~~~~~~~~~~~~~~Li~~y~ 434 (758)
.|.-.+|+..|+.-+....+ ++..+-.. ........+....++|-. ....+...|..++..|.-.|-
T Consensus 366 --eg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ 441 (579)
T KOG1125|consen 366 --EGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYN 441 (579)
T ss_pred --hhhHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHh
Confidence 77777888887776543210 00000000 111222233444455544 444555578888999999999
Q ss_pred hcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccccHHHHHH
Q 004369 435 KCGRIERASRVFVEMS---TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQV-TFVGALAACSNAGMVYEALG 510 (758)
Q Consensus 435 ~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~ 510 (758)
-.|++++|.+.|+... ..|...||.|...++...+.++|+..|++.++ ++|+-+ ....|.-+|...|.+++|.+
T Consensus 442 ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~ 519 (579)
T KOG1125|consen 442 LSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVK 519 (579)
T ss_pred cchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHH
Confidence 9999999999999876 34778999999999999999999999999998 789843 33444448999999999998
Q ss_pred HHHHhhh
Q 004369 511 YFEMMQK 517 (758)
Q Consensus 511 ~~~~~~~ 517 (758)
+|-.+..
T Consensus 520 hlL~AL~ 526 (579)
T KOG1125|consen 520 HLLEALS 526 (579)
T ss_pred HHHHHHH
Confidence 8876543
No 128
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.12 E-value=0.0025 Score=62.10 Aligned_cols=214 Identities=14% Similarity=0.140 Sum_probs=162.1
Q ss_pred HHHHhHHhhhHHhcCCHHHHHHHHHhcCCCChhHHHHHH---HHHHhcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHH
Q 004369 423 VVVGTALVNMYKKCGRIERASRVFVEMSTRTLISWTSMI---TGFANHSLSHQALQLFEDMLLAGVRPNQVT-FVGALAA 498 (758)
Q Consensus 423 ~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a 498 (758)
+.-.--|...+...|++.+|+.-|....+-|+..|.++. ..|...|+..-|+.=+.+.++ ++||-.. -..-...
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~v 115 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVV 115 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchh
Confidence 333334566667789999999999998888888877764 478888999999999999888 6888442 2222335
Q ss_pred HhccccHHHHHHHHHHhhhhcCCCCC----HHHHH------------HHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHH
Q 004369 499 CSNAGMVYEALGYFEMMQKEYKIKPV----MDHYM------------CLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIW 560 (758)
Q Consensus 499 ~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~------------~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~ 560 (758)
+.++|.+++|..-|+.+... .|+ .+++. ..+..+.-.|+...|++++..+ .+.| |...+
T Consensus 116 llK~Gele~A~~DF~~vl~~---~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~ 192 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQH---EPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLR 192 (504)
T ss_pred hhhcccHHHHHHHHHHHHhc---CCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHH
Confidence 67899999999999988752 231 22222 2234455678999999999888 7777 77777
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhhCCCCCCCceeEEEECCEEEEE
Q 004369 561 SVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREEKLSETDDWSWIRIKDKVYSF 640 (758)
Q Consensus 561 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f 640 (758)
..-..+|...|+...|+.-++.+-++..++...+.-++..+...|+.+++...+++..+.+
T Consensus 193 ~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld------------------- 253 (504)
T KOG0624|consen 193 QARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLD------------------- 253 (504)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC-------------------
Confidence 7778888999999999999999999999999999999999999999999988877766532
Q ss_pred ecCCCCCCChHHHHHHHHHHHHHH
Q 004369 641 KPNDGLHPQSAEIFKVLDELVEKA 664 (758)
Q Consensus 641 ~~~~~~~~~~~~i~~~l~~l~~~m 664 (758)
..|..+---|.+|.++.+.+
T Consensus 254 ----pdHK~Cf~~YKklkKv~K~l 273 (504)
T KOG0624|consen 254 ----PDHKLCFPFYKKLKKVVKSL 273 (504)
T ss_pred ----cchhhHHHHHHHHHHHHHHH
Confidence 25555555666666655544
No 129
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.11 E-value=4.7e-06 Score=53.75 Aligned_cols=35 Identities=29% Similarity=0.621 Sum_probs=32.8
Q ss_pred chHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCCh
Q 004369 242 MSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNE 276 (758)
Q Consensus 242 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 276 (758)
++||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999984
No 130
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.10 E-value=5.4e-06 Score=53.46 Aligned_cols=35 Identities=29% Similarity=0.688 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 004369 455 ISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQ 489 (758)
Q Consensus 455 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 489 (758)
++||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999973
No 131
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.07 E-value=6e-05 Score=78.01 Aligned_cols=122 Identities=16% Similarity=0.229 Sum_probs=100.7
Q ss_pred HHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHH
Q 004369 492 FVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRR 569 (758)
Q Consensus 492 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~ 569 (758)
..+++..+...+++++|.++|+++.+. .|+ ....|+..+...++-.+|.+++++. ...| |...+..-...|..
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 455666677788899999999988763 355 3445788888888888999988887 4445 66667767777889
Q ss_pred cCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhh
Q 004369 570 HGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTR 618 (758)
Q Consensus 570 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 618 (758)
.++++.|+.+++++.++.|++..+|..|+.+|.+.|++++|.-.++.+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999998876
No 132
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.07 E-value=0.00061 Score=76.49 Aligned_cols=133 Identities=11% Similarity=0.056 Sum_probs=90.1
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHH
Q 004369 453 TLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQ-VTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCL 531 (758)
Q Consensus 453 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 531 (758)
++..+-.|.....+.|++++|+.+++...+ +.||. .....+..++.+.+++++|....++... .-+-+......+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHH
Confidence 455666666777777777777777777776 56663 3555566677777777777777777754 222235566667
Q ss_pred HHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCC
Q 004369 532 IDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPK 589 (758)
Q Consensus 532 i~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 589 (758)
..++.+.|++++|.++|++. ...| +..+|.++..++.+.|+.++|..+|+++++...+
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~ 220 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGD 220 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc
Confidence 77777777777777777777 3334 3566777777777777777777777777776543
No 133
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.07 E-value=0.035 Score=61.46 Aligned_cols=170 Identities=10% Similarity=0.099 Sum_probs=96.5
Q ss_pred HHHHHHHHhcccchHHHH---HHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCCCChh--HHHH-HHHHH
Q 004369 391 FSSILTICSRLVALEQGE---QIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMSTRTLI--SWTS-MITGF 464 (758)
Q Consensus 391 ~~~ll~a~~~~~~~~~a~---~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~~--~~~~-li~~~ 464 (758)
.+.++..|.+.++..... -+++..... -+.|..+--.||..|+-.|-+..|.++|+.+.-+++. |..- +..-+
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~-s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~~~~~ 517 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLTK-SPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLIFRRA 517 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhc-CCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHHHHHH
Confidence 345667788877766333 333333332 2445666668899999999999999999998755442 2222 23445
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccccHHHHHHH---HHHhhhhcCCCCCHHHHHHHHHHHHHcCC
Q 004369 465 ANHSLSHQALQLFEDMLLAGVRPN-QVTFVGALAACSNAGMVYEALGY---FEMMQKEYKIKPVMDHYMCLIDMFVRLGC 540 (758)
Q Consensus 465 ~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~---~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 540 (758)
...|++..+...+++..+- ...+ ..+-..+..|| +.|.+.+..++ -+++... .-.....+-+..++.+...++
T Consensus 518 ~t~g~~~~~s~~~~~~lkf-y~~~~kE~~eyI~~AY-r~g~ySkI~em~~fr~rL~~S-~q~~a~~VE~~~l~ll~~~~~ 594 (932)
T KOG2053|consen 518 ETSGRSSFASNTFNEHLKF-YDSSLKETPEYIALAY-RRGAYSKIPEMLAFRDRLMHS-LQKWACRVENLQLSLLCNADR 594 (932)
T ss_pred HhcccchhHHHHHHHHHHH-HhhhhhhhHHHHHHHH-HcCchhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCc
Confidence 5567777777776665441 1111 11212222233 33444444333 2333221 111123344667888899999
Q ss_pred HHHHHHHHHHcCCCC--CHHHHHHHH
Q 004369 541 IEEAFDFIKKMDFEP--NEVIWSVFI 564 (758)
Q Consensus 541 ~~~A~~~~~~m~~~p--~~~~~~~ll 564 (758)
.++-...+..|...| |..-|..|.
T Consensus 595 ~~q~~~~~~~~~l~~~e~~I~w~~L~ 620 (932)
T KOG2053|consen 595 GTQLLKLLESMKLPPSEDRIQWVSLS 620 (932)
T ss_pred HHHHHHHHhccccCcchhhccccccc
Confidence 999999988885444 444455443
No 134
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.04 E-value=0.0012 Score=67.84 Aligned_cols=138 Identities=17% Similarity=0.202 Sum_probs=110.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHhccccHHHHHHHHHHhhhhcCCCCC-HHHHHHHHHHHHHcC
Q 004369 462 TGFANHSLSHQALQLFEDMLLAGVRPNQVTFVG-ALAACSNAGMVYEALGYFEMMQKEYKIKPV-MDHYMCLIDMFVRLG 539 (758)
Q Consensus 462 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g 539 (758)
-.+...|++++|+..++.+... .||...|.. ....+...++.++|.+.++.+.. ..|+ ....-.+.++|.+.|
T Consensus 314 ~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~all~~g 388 (484)
T COG4783 314 LQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQALLKGG 388 (484)
T ss_pred HHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHHHHHhcC
Confidence 3455678899999999998874 666555544 45578899999999999999975 3465 556677889999999
Q ss_pred CHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHh
Q 004369 540 CIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLT 617 (758)
Q Consensus 540 ~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 617 (758)
+..+|...+++. .-.| |+..|..|..+|...|+..++... .+..|.-.|+|++|.......
T Consensus 389 ~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~A~~~l~~A 451 (484)
T COG4783 389 KPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQAIIFLMRA 451 (484)
T ss_pred ChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHHHHHHHHHH
Confidence 999999999988 3344 788999999999999998876655 455678899999999998888
Q ss_pred hhCC
Q 004369 618 REEK 621 (758)
Q Consensus 618 ~~~~ 621 (758)
+++.
T Consensus 452 ~~~~ 455 (484)
T COG4783 452 SQQV 455 (484)
T ss_pred HHhc
Confidence 7753
No 135
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.00 E-value=0.0015 Score=61.21 Aligned_cols=167 Identities=19% Similarity=0.186 Sum_probs=118.2
Q ss_pred HHhhhHHhcCCHHHHHHHHHhcCCCChhHHHHH---HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccc
Q 004369 428 ALVNMYKKCGRIERASRVFVEMSTRTLISWTSM---ITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGM 504 (758)
Q Consensus 428 ~Li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 504 (758)
.++-+...+|+.+.|...++.+..+=+-++... ..-+-..|++++|+++++...+.. +.|.+++.-=+...-..|+
T Consensus 57 qV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK 135 (289)
T KOG3060|consen 57 QVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGK 135 (289)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCC
Confidence 334444456677777776666542211111111 112445788999999999998875 4456777666666666777
Q ss_pred HHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcC---ChhHHHHH
Q 004369 505 VYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHG---NMELGFYA 579 (758)
Q Consensus 505 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g---~~~~a~~~ 579 (758)
--+|++-+....+ .+..|.+.|.-+.+.|...|++++|.-.++++ -..| +...+..+...+...| +++.|.+.
T Consensus 136 ~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arky 213 (289)
T KOG3060|consen 136 NLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKY 213 (289)
T ss_pred cHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 7788888887776 46678899999999999999999999999998 5556 5666677777666555 77889999
Q ss_pred HHHHhccCCCCchhHHHH
Q 004369 580 AEQLLKLKPKDCESYAML 597 (758)
Q Consensus 580 ~~~~~~~~p~~~~~~~~l 597 (758)
+++++++.|.+...+..+
T Consensus 214 y~~alkl~~~~~ral~GI 231 (289)
T KOG3060|consen 214 YERALKLNPKNLRALFGI 231 (289)
T ss_pred HHHHHHhChHhHHHHHHH
Confidence 999999999665444433
No 136
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.98 E-value=0.00064 Score=77.06 Aligned_cols=198 Identities=8% Similarity=0.108 Sum_probs=138.5
Q ss_pred CCC-CHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcC---CCC------
Q 004369 384 MKP-DLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMS---TRT------ 453 (758)
Q Consensus 384 ~~p-~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~---~~~------ 453 (758)
+.| +...+..++..+...++++++.++.....+.. +.....|-.+...|.+.++.+++..+ .+. ..+
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~v 102 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIV 102 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHH
Confidence 444 44566777888878888888888887655542 22333444444467777777766655 222 111
Q ss_pred -------------hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcC
Q 004369 454 -------------LISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYK 520 (758)
Q Consensus 454 -------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 520 (758)
-..+-.+..+|.+.|+.++|..+|+++++.. .-|....+.+...++.. ++++|.+++..+...
T Consensus 103 e~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~-- 178 (906)
T PRK14720 103 EHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR-- 178 (906)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH--
Confidence 1345567778888899999999999999965 33467788888888888 999999998888663
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCC---------------------HHHHHHHHHHHHHcCChhHHHH
Q 004369 521 IKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEPN---------------------EVIWSVFIAGCRRHGNMELGFY 578 (758)
Q Consensus 521 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~---------------------~~~~~~ll~~~~~~g~~~~a~~ 578 (758)
|....++.++.++|.++ ...|+ ..++--|-.-|...++++++..
T Consensus 179 --------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~ 244 (906)
T PRK14720 179 --------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIY 244 (906)
T ss_pred --------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHH
Confidence 44444556666666555 33332 2233444466777889999999
Q ss_pred HHHHHhccCCCCchhHHHHHHHhh
Q 004369 579 AAEQLLKLKPKDCESYAMLLDIFV 602 (758)
Q Consensus 579 ~~~~~~~~~p~~~~~~~~l~~~~~ 602 (758)
+++.+++.+|.|..+..-|+..|.
T Consensus 245 iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 245 ILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHhcCCcchhhHHHHHHHHH
Confidence 999999999999999888988886
No 137
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.95 E-value=0.00024 Score=62.94 Aligned_cols=114 Identities=17% Similarity=0.100 Sum_probs=87.2
Q ss_pred HHHHHHHcCCCCCH-HHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CC
Q 004369 476 LFEDMLLAGVRPNQ-VTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DF 553 (758)
Q Consensus 476 ~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~ 553 (758)
.|++... ..|+. .....+...+...|++++|.+.|+.+... .+.+...+..+...|.+.|++++|.+.+++. ..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445544 45543 34555666778889999999999888662 2345677888889999999999999988887 45
Q ss_pred CC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchh
Q 004369 554 EP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCES 593 (758)
Q Consensus 554 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 593 (758)
.| +...|..+...+...|+++.|...+++++++.|++...
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 55 56778888888999999999999999999999987553
No 138
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.95 E-value=1.4e-05 Score=51.07 Aligned_cols=34 Identities=26% Similarity=0.724 Sum_probs=31.1
Q ss_pred cchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCC
Q 004369 241 VMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQP 274 (758)
Q Consensus 241 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 274 (758)
+.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999887
No 139
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.92 E-value=1.9e-05 Score=50.45 Aligned_cols=33 Identities=30% Similarity=0.551 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 004369 455 ISWTSMITGFANHSLSHQALQLFEDMLLAGVRP 487 (758)
Q Consensus 455 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 487 (758)
.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888877
No 140
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.87 E-value=0.00045 Score=71.67 Aligned_cols=127 Identities=12% Similarity=0.109 Sum_probs=86.6
Q ss_pred HHhHHhhhHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccc
Q 004369 425 VGTALVNMYKKCGRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGM 504 (758)
Q Consensus 425 ~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 504 (758)
...+|+..+...++++.|..+|+++.+.++..+..++..+...++-.+|++++++..+. .+-|...+..-...|.+.++
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCC
Confidence 33445555666777888888888877766666666777777777777888888777754 12234444444455677777
Q ss_pred HHHHHHHHHHhhhhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHcCCCC
Q 004369 505 VYEALGYFEMMQKEYKIKPV-MDHYMCLIDMFVRLGCIEEAFDFIKKMDFEP 555 (758)
Q Consensus 505 ~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p 555 (758)
++.|.++.+++.+ ..|+ ..+|..|+..|...|++++|+..++.+|..|
T Consensus 250 ~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 250 YELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred HHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 8888888777764 3344 5577778888888888888887777775544
No 141
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.86 E-value=0.00018 Score=74.89 Aligned_cols=97 Identities=14% Similarity=0.092 Sum_probs=48.8
Q ss_pred HhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHH
Q 004369 499 CSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELG 576 (758)
Q Consensus 499 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a 576 (758)
+...|++++|...|+++.+. -+.+...|..+..+|.+.|++++|+..++++ .+.| +...|..+..+|...|++++|
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA 89 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTA 89 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHH
Confidence 34445555555555555431 1122444455555555555555555555554 3344 344455555555555555555
Q ss_pred HHHHHHHhccCCCCchhHHHH
Q 004369 577 FYAAEQLLKLKPKDCESYAML 597 (758)
Q Consensus 577 ~~~~~~~~~~~p~~~~~~~~l 597 (758)
...++++++++|+++.....+
T Consensus 90 ~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 90 KAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHHhCCCCHHHHHHH
Confidence 555555555555554444443
No 142
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.84 E-value=0.056 Score=56.43 Aligned_cols=210 Identities=10% Similarity=0.110 Sum_probs=141.8
Q ss_pred HHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcC---CHHHHHHHHHhcCC----CChhHHHHHHHHHHhcCCHHHHHHHH
Q 004369 405 EQGEQIHALTLKTGFLSDVVVGTALVNMYKKCG---RIERASRVFVEMST----RTLISWTSMITGFANHSLSHQALQLF 477 (758)
Q Consensus 405 ~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g---~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~ 477 (758)
+++..+++..+..-...+..+|.++.+---..- +.+.....+++... .-..+|-..+..-.+..-...|..+|
T Consensus 310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF 389 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIF 389 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHH
Confidence 444555555444333334555555443221111 23444444444431 22346777777777777789999999
Q ss_pred HHHHHcCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc---CC
Q 004369 478 EDMLLAGVRP-NQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM---DF 553 (758)
Q Consensus 478 ~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~ 553 (758)
.+..+.+..+ +.....+++.-++ +++.+-|.++|+.=.+.+|-.| .--.+.++-+...++-+.|..+|++. .+
T Consensus 390 ~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~p--~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 390 KKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDSP--EYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCCh--HHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 9999998888 5667777776554 5788999999998777666544 55567889999999999999999998 34
Q ss_pred CCC--HHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCC----chhHHHHHHHhhhCCCchhHHHHHHHh
Q 004369 554 EPN--EVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKD----CESYAMLLDIFVSAGRWEDVAVVKNLT 617 (758)
Q Consensus 554 ~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m 617 (758)
.|| ..+|..++.--..-|++..+.++-++....-|.+ ...-..+.+.|.=.+.+..-..-++.|
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 554 4689999999999999999999988887766622 123456667777666665444433333
No 143
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.83 E-value=0.00061 Score=61.03 Aligned_cols=114 Identities=17% Similarity=0.172 Sum_probs=67.0
Q ss_pred cccHHHHHHHHHHhhhhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCCH----HHHHHHHHHHHHcCChhH
Q 004369 502 AGMVYEALGYFEMMQKEYKIKP-VMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEPNE----VIWSVFIAGCRRHGNMEL 575 (758)
Q Consensus 502 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~~~~~~g~~~~ 575 (758)
.++...+...++.+.+.++-.| .....-.+...+...|++++|.+.|+.. ...||. .....|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 5666666666666665432221 1223333456666777777777777666 222332 234445666667777777
Q ss_pred HHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHH
Q 004369 576 GFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNL 616 (758)
Q Consensus 576 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 616 (758)
|+..++.. .-.+-.+..+..++++|.+.|++++|...++.
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77776552 22333455667777777777777777777664
No 144
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.82 E-value=0.0038 Score=59.00 Aligned_cols=154 Identities=16% Similarity=0.106 Sum_probs=75.5
Q ss_pred hhhHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cccH
Q 004369 430 VNMYKKCGRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSN----AGMV 505 (758)
Q Consensus 430 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~ 505 (758)
...|++.|++++|.+.......-+....| ...+.+..+.+-|.+.+++|.+- -+..|.+-|..++.+ .+.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~ 189 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKI 189 (299)
T ss_pred hHHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhh
Confidence 34466667777777766653322222222 22334455566666666666542 134455544444432 2345
Q ss_pred HHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCCh-hHHHHHHHH
Q 004369 506 YEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNM-ELGFYAAEQ 582 (758)
Q Consensus 506 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~-~~a~~~~~~ 582 (758)
.+|.-+|++|.+ ...|+..+.+.+.-+....|++++|..++++. .-.+ ++.+...++-.-...|.. +.-.+...+
T Consensus 190 qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~Q 267 (299)
T KOG3081|consen 190 QDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQ 267 (299)
T ss_pred hhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 556666666644 34455555555555555556666666555555 2122 344444444333333332 333344445
Q ss_pred HhccCCCC
Q 004369 583 LLKLKPKD 590 (758)
Q Consensus 583 ~~~~~p~~ 590 (758)
+....|..
T Consensus 268 Lk~~~p~h 275 (299)
T KOG3081|consen 268 LKLSHPEH 275 (299)
T ss_pred HHhcCCcc
Confidence 54444543
No 145
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.80 E-value=0.00014 Score=69.83 Aligned_cols=111 Identities=17% Similarity=0.176 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004369 472 QALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKP-VMDHYMCLIDMFVRLGCIEEAFDFIKK 550 (758)
Q Consensus 472 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~ 550 (758)
+...+-++++..| .-..+.+++.+|+..|..+++ +.| |..-|..-..+|.+.|.++.|++-.+.
T Consensus 76 e~~~~AE~LK~eG------------N~~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~ 140 (304)
T KOG0553|consen 76 EDKALAESLKNEG------------NKLMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCES 140 (304)
T ss_pred hHHHHHHHHHHHH------------HHHHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHH
Confidence 4455555565554 235577888888888888875 344 466677778888888888888887777
Q ss_pred c-CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHH
Q 004369 551 M-DFEPN-EVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAML 597 (758)
Q Consensus 551 m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 597 (758)
. .+.|. ..+|..|..+|...|++++|++.|+++++++|++......|
T Consensus 141 Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL 189 (304)
T KOG0553|consen 141 ALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNL 189 (304)
T ss_pred HHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHH
Confidence 6 67774 56788888888888888888888888888888886544444
No 146
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.78 E-value=0.0035 Score=58.78 Aligned_cols=160 Identities=13% Similarity=0.142 Sum_probs=124.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHH
Q 004369 457 WTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGAL-AACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMF 535 (758)
Q Consensus 457 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 535 (758)
|..++-+....|+.+.|...++++... + |...-...+= .-+...|++++|.++++.+.++ -+.|..+|---+-+.
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d--dpt~~v~~KRKlAil 130 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED--DPTDTVIRKRKLAIL 130 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc--CcchhHHHHHHHHHH
Confidence 444556667789999999999999886 3 5543222221 1245578999999999999874 345567777667777
Q ss_pred HHcCCHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCC---CchhH
Q 004369 536 VRLGCIEEAFDFIKKM--DFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAG---RWEDV 610 (758)
Q Consensus 536 ~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~a 610 (758)
-..|+--+|++-+.+. .+..|...|.-|...|...|+++.|.-.+++++=+.|.++-.+..|++.+...| +.+-|
T Consensus 131 ka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 131 KAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred HHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 7788888888877776 455699999999999999999999999999999999999999999999987776 45556
Q ss_pred HHHHHHhhhC
Q 004369 611 AVVKNLTREE 620 (758)
Q Consensus 611 ~~~~~~m~~~ 620 (758)
.+++....+-
T Consensus 211 rkyy~~alkl 220 (289)
T KOG3060|consen 211 RKYYERALKL 220 (289)
T ss_pred HHHHHHHHHh
Confidence 7777766653
No 147
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.75 E-value=3.6e-05 Score=61.50 Aligned_cols=78 Identities=19% Similarity=0.333 Sum_probs=53.8
Q ss_pred cCCHHHHHHHHHHc-CCCC---CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHH
Q 004369 538 LGCIEEAFDFIKKM-DFEP---NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVV 613 (758)
Q Consensus 538 ~g~~~~A~~~~~~m-~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 613 (758)
.|++++|+.+++++ ...| +...|..+..++.+.|++++|..++++ .+.+|.++.....++.+|.+.|++++|.++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 46677777777776 2222 445566677777888888888888777 666676666677778888888888888877
Q ss_pred HHH
Q 004369 614 KNL 616 (758)
Q Consensus 614 ~~~ 616 (758)
++.
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 764
No 148
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.73 E-value=0.0003 Score=57.32 Aligned_cols=92 Identities=22% Similarity=0.388 Sum_probs=71.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCC
Q 004369 528 YMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAG 605 (758)
Q Consensus 528 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 605 (758)
+..+...+...|++++|...+++. ...| +...|..+...+...|+++.|...+++.++..|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445666777788888888888876 4444 34667777777888888888888888888888888778888888888888
Q ss_pred CchhHHHHHHHhhh
Q 004369 606 RWEDVAVVKNLTRE 619 (758)
Q Consensus 606 ~~~~a~~~~~~m~~ 619 (758)
++++|...++...+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 88888888777654
No 149
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.73 E-value=0.013 Score=66.82 Aligned_cols=237 Identities=12% Similarity=0.101 Sum_probs=146.4
Q ss_pred CcchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 004369 240 NVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMY 319 (758)
Q Consensus 240 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 319 (758)
+...|..|+..+...+++++|.++.+.-.+. .|+...+ |-.+..
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~----------------------------------yy~~G~ 73 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISA----------------------------------LYISGI 73 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceeh----------------------------------HHHHHH
Confidence 4556777777777777777777777755542 3443322 222222
Q ss_pred HHHhcCCHHHHHHHHccCCCCCeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHh
Q 004369 320 LYLKCGLVDEAQKLFDGMSHVNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILTICS 399 (758)
Q Consensus 320 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 399 (758)
.|.+.++.+++..+ .+ +..... ..++.-...+...|... .-+...+..+..+|.
T Consensus 74 l~~q~~~~~~~~lv--~~-----------l~~~~~-----------~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Yd 127 (906)
T PRK14720 74 LSLSRRPLNDSNLL--NL-----------IDSFSQ-----------NLKWAIVEHICDKILLY--GENKLALRTLAEAYA 127 (906)
T ss_pred HHHhhcchhhhhhh--hh-----------hhhccc-----------ccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHH
Confidence 45555555544443 11 111111 33443333333344432 234446777888888
Q ss_pred cccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 004369 400 RLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQALQLFED 479 (758)
Q Consensus 400 ~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 479 (758)
+.|+.+++..+++.+++.. +.|+.+.|.+...|+.. ++++|.+++.+. +.-|...+++.++.++|.+
T Consensus 128 k~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA-----------V~~~i~~kq~~~~~e~W~k 194 (906)
T PRK14720 128 KLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKA-----------IYRFIKKKQYVGIEEIWSK 194 (906)
T ss_pred HcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHH-----------HHHHHhhhcchHHHHHHHH
Confidence 9999999999999999887 66888999999999999 999999987664 3346777788899999998
Q ss_pred HHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CH
Q 004369 480 MLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NE 557 (758)
Q Consensus 480 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~ 557 (758)
+... .|+.+.+ -.++.+.+....+..--+.++--+...|-...+++++.++++.. ...| |.
T Consensus 195 ~~~~--~~~d~d~---------------f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~ 257 (906)
T PRK14720 195 LVHY--NSDDFDF---------------FLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNN 257 (906)
T ss_pred HHhc--CcccchH---------------HHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcch
Confidence 8874 4443322 22222223222222233345555666677777888888888877 5555 55
Q ss_pred HHHHHHHHHHH
Q 004369 558 VIWSVFIAGCR 568 (758)
Q Consensus 558 ~~~~~ll~~~~ 568 (758)
....-|+..|.
T Consensus 258 ~a~~~l~~~y~ 268 (906)
T PRK14720 258 KAREELIRFYK 268 (906)
T ss_pred hhHHHHHHHHH
Confidence 55666666655
No 150
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.72 E-value=4.2e-05 Score=47.56 Aligned_cols=31 Identities=23% Similarity=0.487 Sum_probs=27.0
Q ss_pred chHHHHHHHHhhCCChhhHHHHHHHHHHCCC
Q 004369 242 MSWTTVIGACGENGEAVQGLRFFSKMLSEGI 272 (758)
Q Consensus 242 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 272 (758)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4789999999999999999999999988764
No 151
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.70 E-value=0.0019 Score=70.36 Aligned_cols=140 Identities=15% Similarity=0.091 Sum_probs=81.8
Q ss_pred CCChhHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhcc--------ccHHHHHHHHHHhh
Q 004369 451 TRTLISWTSMITGFANH-----SLSHQALQLFEDMLLAGVRPNQ-VTFVGALAACSNA--------GMVYEALGYFEMMQ 516 (758)
Q Consensus 451 ~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~--------g~~~~a~~~~~~~~ 516 (758)
..|...|...+.|.... +...+|+.+|++..+ ..||. ..+..+..++... +++..+.+......
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 45667777777664432 226688888888888 56773 3344332222111 12233333333322
Q ss_pred hhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCch
Q 004369 517 KEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCE 592 (758)
Q Consensus 517 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 592 (758)
.......+...|..+.-.....|++++|...++++ ...|+...|..+...+...|+.++|...++++++++|.++.
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 21112233455666655555667777777777776 56666666777777777777777777777777777777654
No 152
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.68 E-value=5e-05 Score=47.21 Aligned_cols=31 Identities=26% Similarity=0.648 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 004369 455 ISWTSMITGFANHSLSHQALQLFEDMLLAGV 485 (758)
Q Consensus 455 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 485 (758)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888888764
No 153
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.67 E-value=0.00084 Score=57.73 Aligned_cols=101 Identities=16% Similarity=0.115 Sum_probs=55.3
Q ss_pred HHHHHHHhccccHHHHHHHHHHhhhhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCC----HHHHHHHHHH
Q 004369 493 VGALAACSNAGMVYEALGYFEMMQKEYKIKP-VMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEPN----EVIWSVFIAG 566 (758)
Q Consensus 493 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~ 566 (758)
..+...+...|++++|.+.|..+.+...-.| ....+..+..++.+.|++++|.+.++++ ...|+ ..++..+...
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 3344445555666666666666554321111 1234444566666666666666666655 22222 3345566666
Q ss_pred HHHcCChhHHHHHHHHHhccCCCCchh
Q 004369 567 CRRHGNMELGFYAAEQLLKLKPKDCES 593 (758)
Q Consensus 567 ~~~~g~~~~a~~~~~~~~~~~p~~~~~ 593 (758)
+...|+.+.|...++++++..|+++..
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 666667777777777776666665443
No 154
>PRK15331 chaperone protein SicA; Provisional
Probab=97.65 E-value=0.001 Score=58.77 Aligned_cols=90 Identities=13% Similarity=0.057 Sum_probs=79.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCc
Q 004369 530 CLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRW 607 (758)
Q Consensus 530 ~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 607 (758)
....-+...|++++|..+|+-. -..| |..-|..|...|...++++.|...+..+..++++||..+...+.+|...|+.
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence 3445566899999999999987 3344 5667888999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhhh
Q 004369 608 EDVAVVKNLTRE 619 (758)
Q Consensus 608 ~~a~~~~~~m~~ 619 (758)
++|+..++...+
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 999999998865
No 155
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.64 E-value=0.00061 Score=58.61 Aligned_cols=96 Identities=13% Similarity=0.042 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCC---chhHHHH
Q 004369 526 DHYMCLIDMFVRLGCIEEAFDFIKKM-DFEPN----EVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKD---CESYAML 597 (758)
Q Consensus 526 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l 597 (758)
..+-.++..+.+.|++++|.+.++++ ...|+ ...+..+...+...|+++.|...+++++...|++ +..+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 45667888899999999999999988 33443 3467778999999999999999999999998875 5678899
Q ss_pred HHHhhhCCCchhHHHHHHHhhhCC
Q 004369 598 LDIFVSAGRWEDVAVVKNLTREEK 621 (758)
Q Consensus 598 ~~~~~~~g~~~~a~~~~~~m~~~~ 621 (758)
+.+|.+.|++++|.+.++.+.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 999999999999999999988743
No 156
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.63 E-value=0.0015 Score=60.49 Aligned_cols=129 Identities=14% Similarity=0.110 Sum_probs=74.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHH
Q 004369 455 ISWTSMITGFANHSLSHQALQLFEDMLLAGVRPN--QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLI 532 (758)
Q Consensus 455 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 532 (758)
..+..+...+...|++++|+..|++..+....++ ...+..+...+.+.|++++|...+++..+. .+-+...+..+.
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg 113 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHH
Confidence 4556666666667777777777777665432222 245555566666667777777766666542 112244455555
Q ss_pred HHHHHcCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCC
Q 004369 533 DMFVRLGCIEEAFDFIKKMDFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGR 606 (758)
Q Consensus 533 ~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 606 (758)
.+|...|+...+..-++.. ...+++|.+.++++++.+|++ |..+...+...|+
T Consensus 114 ~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 5665555554444322211 012577888888888888876 5555555555554
No 157
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.63 E-value=0.00012 Score=55.84 Aligned_cols=64 Identities=19% Similarity=0.236 Sum_probs=57.7
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCC-CchhHHHHHHHhhh
Q 004369 556 NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAG-RWEDVAVVKNLTRE 619 (758)
Q Consensus 556 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~ 619 (758)
++.+|..+...+...|++++|+..++++++++|+++..+..++.+|...| ++++|.+.++...+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46788899999999999999999999999999999999999999999999 79999999888765
No 158
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.60 E-value=0.0039 Score=55.78 Aligned_cols=125 Identities=12% Similarity=0.065 Sum_probs=73.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCH--HHHHHHH
Q 004369 457 WTSMITGFANHSLSHQALQLFEDMLLAGVRPN--QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVM--DHYMCLI 532 (758)
Q Consensus 457 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~li 532 (758)
|..++..+ ..++...+...++++.+....-. ......+...+...|++++|...|+.+... .-.|+. ...-.|.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHH
Confidence 33344444 36667777777777766421111 122333445566677777777777777663 222221 2333456
Q ss_pred HHHHHcCCHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 004369 533 DMFVRLGCIEEAFDFIKKMDFE-PNEVIWSVFIAGCRRHGNMELGFYAAEQL 583 (758)
Q Consensus 533 ~~~~~~g~~~~A~~~~~~m~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 583 (758)
..+...|++++|+..++...-. .....+..+...+...|+.++|...|+++
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 6777777777777777665222 24455666777777777777777777765
No 159
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.59 E-value=0.01 Score=56.22 Aligned_cols=148 Identities=15% Similarity=0.067 Sum_probs=106.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHH----H
Q 004369 461 ITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMF----V 536 (758)
Q Consensus 461 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~----~ 536 (758)
...|...|++++|++..+... ..+....+ ...+.+..+++-|.+.++.|.+ + .+-.+.+.|..++ .
T Consensus 115 a~i~~~~~~~deAl~~~~~~~----~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~---i-ded~tLtQLA~awv~la~ 184 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE----NLEAAALN--VQILLKMHRFDLAEKELKKMQQ---I-DEDATLTQLAQAWVKLAT 184 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc----hHHHHHHH--HHHHHHHHHHHHHHHHHHHHHc---c-chHHHHHHHHHHHHHHhc
Confidence 345788899999998887621 11222222 2235577888999999998865 2 2334555454444 4
Q ss_pred HcCCHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHH-HH
Q 004369 537 RLGCIEEAFDFIKKM--DFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVA-VV 613 (758)
Q Consensus 537 ~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~-~~ 613 (758)
-.+.+.+|.-+|++| ...|+..+.+-...+|...|++++|+.+++.++..+++++.+...++-.--..|+-.++. +.
T Consensus 185 ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~ 264 (299)
T KOG3081|consen 185 GGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERN 264 (299)
T ss_pred cchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHH
Confidence 456789999999999 477888888888888999999999999999999999999988888887777788776554 33
Q ss_pred HHHhh
Q 004369 614 KNLTR 618 (758)
Q Consensus 614 ~~~m~ 618 (758)
....+
T Consensus 265 l~QLk 269 (299)
T KOG3081|consen 265 LSQLK 269 (299)
T ss_pred HHHHH
Confidence 44443
No 160
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.59 E-value=0.1 Score=52.38 Aligned_cols=248 Identities=17% Similarity=0.145 Sum_probs=168.8
Q ss_pred CCChhHHHHHHHHhHhCCCCCCH--HHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHH
Q 004369 366 HNGGTEALSIFSKLNSSGMKPDL--YTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERAS 443 (758)
Q Consensus 366 ~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~ 443 (758)
.|+++.|.+-|+.|... |.. .-+..+.-...+.|+.+.+.+.-+.....- +.-.....++++..+..|+++.|+
T Consensus 133 eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~Al 208 (531)
T COG3898 133 EGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGAL 208 (531)
T ss_pred cCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHH
Confidence 89999999999999762 222 223344444567888888888777665543 223556778899999999999999
Q ss_pred HHHHhcC-----CCChh--HHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhccccHHHHHHHH
Q 004369 444 RVFVEMS-----TRTLI--SWTSMITGFAN---HSLSHQALQLFEDMLLAGVRPNQVT-FVGALAACSNAGMVYEALGYF 512 (758)
Q Consensus 444 ~~~~~~~-----~~~~~--~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~ 512 (758)
++.+.-. ++|+. .--.|+.+-+. .-+...|...-.+..+ +.||.+- -.....++.+.|++.++-.++
T Consensus 209 kLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~il 286 (531)
T COG3898 209 KLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKIL 286 (531)
T ss_pred HHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHH
Confidence 9998654 44542 22333333222 2345566665555554 6788543 344456889999999999999
Q ss_pred HHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccC
Q 004369 513 EMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM----DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLK 587 (758)
Q Consensus 513 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 587 (758)
+.+-+ ..|....+... .+.|.|+. +..-+++. .++| +..+...+..+-...|++..|..-.+.+....
T Consensus 287 E~aWK---~ePHP~ia~lY--~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~ 359 (531)
T COG3898 287 ETAWK---AEPHPDIALLY--VRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREA 359 (531)
T ss_pred HHHHh---cCCChHHHHHH--HHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhC
Confidence 99965 46766655433 33455543 33333332 5566 46667778888889999999999999999999
Q ss_pred CCCchhHHHHHHHhhhC-CCchhHHHHHHHhhhCCCCCCCcee
Q 004369 588 PKDCESYAMLLDIFVSA-GRWEDVAVVKNLTREEKLSETDDWS 629 (758)
Q Consensus 588 p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~s 629 (758)
|.. ..|..|+++-... |+-.++...+-+.... ..+|.++
T Consensus 360 pre-s~~lLlAdIeeAetGDqg~vR~wlAqav~A--PrdPaW~ 399 (531)
T COG3898 360 PRE-SAYLLLADIEEAETGDQGKVRQWLAQAVKA--PRDPAWT 399 (531)
T ss_pred chh-hHHHHHHHHHhhccCchHHHHHHHHHHhcC--CCCCccc
Confidence 985 7889999987655 8888888777665542 3445443
No 161
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.55 E-value=0.0012 Score=68.93 Aligned_cols=103 Identities=16% Similarity=0.178 Sum_probs=83.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCC-CHHHHHHHHHHHHH
Q 004369 460 MITGFANHSLSHQALQLFEDMLLAGVRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKP-VMDHYMCLIDMFVR 537 (758)
Q Consensus 460 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~ 537 (758)
....+...|++++|+++|+++++. .|+ ...|..+..++.+.|++++|...++.+.+ +.| +...|..+..+|..
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHH
Confidence 345667889999999999999985 454 66777888899999999999999999976 334 57788899999999
Q ss_pred cCCHHHHHHHHHHc-CCCCCHHHHHHHHHHH
Q 004369 538 LGCIEEAFDFIKKM-DFEPNEVIWSVFIAGC 567 (758)
Q Consensus 538 ~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~ 567 (758)
.|++++|+..|++. .+.|+......++..|
T Consensus 83 lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999998 6777655544444444
No 162
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.54 E-value=0.00068 Score=65.27 Aligned_cols=96 Identities=22% Similarity=0.299 Sum_probs=78.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCC-HHHHHHHHHHHHHcC
Q 004369 462 TGFANHSLSHQALQLFEDMLLAGVRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPV-MDHYMCLIDMFVRLG 539 (758)
Q Consensus 462 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g 539 (758)
.-+.+.+++.+|+..|.+.++ +.|+ .+-|..-..+|++.|.++.|++-.+.... +.|. ...|..|..+|...|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~---iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS---IDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh---cChHHHHHHHHHHHHHHccC
Confidence 446778999999999999998 4554 66677778899999999999998887764 5565 678999999999999
Q ss_pred CHHHHHHHHHHc-CCCCCHHHHHH
Q 004369 540 CIEEAFDFIKKM-DFEPNEVIWSV 562 (758)
Q Consensus 540 ~~~~A~~~~~~m-~~~p~~~~~~~ 562 (758)
++++|++.|++. .+.|+-.+|..
T Consensus 164 k~~~A~~aykKaLeldP~Ne~~K~ 187 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELDPDNESYKS 187 (304)
T ss_pred cHHHHHHHHHhhhccCCCcHHHHH
Confidence 999999999988 88897665543
No 163
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.53 E-value=0.00086 Score=61.90 Aligned_cols=94 Identities=14% Similarity=-0.087 Sum_probs=77.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHH
Q 004369 524 VMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEPN----EVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLL 598 (758)
Q Consensus 524 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 598 (758)
....|..++..+...|++++|+..|++. ...|+ ..+|..+...+...|++++|+..+++++++.|.....+..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 3566777788888899999999999887 33333 347889999999999999999999999999999888888888
Q ss_pred HHhh-------hCCCchhHHHHHHHh
Q 004369 599 DIFV-------SAGRWEDVAVVKNLT 617 (758)
Q Consensus 599 ~~~~-------~~g~~~~a~~~~~~m 617 (758)
.+|. ..|++++|...++..
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 8888 788888666665544
No 164
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.49 E-value=0.0012 Score=61.08 Aligned_cols=82 Identities=17% Similarity=0.084 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHH
Q 004369 525 MDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEPN----EVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLD 599 (758)
Q Consensus 525 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 599 (758)
...+..+...|.+.|++++|...|++. ...|+ ...|..+...+...|+++.|...++++++..|+++..+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 345666677777778888887777766 22222 3567788888888888888888888888888888888888888
Q ss_pred HhhhCCC
Q 004369 600 IFVSAGR 606 (758)
Q Consensus 600 ~~~~~g~ 606 (758)
+|...|+
T Consensus 115 ~~~~~g~ 121 (172)
T PRK02603 115 IYHKRGE 121 (172)
T ss_pred HHHHcCC
Confidence 8887776
No 165
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.47 E-value=0.0003 Score=52.92 Aligned_cols=57 Identities=23% Similarity=0.339 Sum_probs=41.6
Q ss_pred HHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369 563 FIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTRE 619 (758)
Q Consensus 563 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 619 (758)
+...+...|++++|...++++++..|+++..+..++.++...|++++|..+++.+.+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445566777777777777777777777777777777777777777777777777654
No 166
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.47 E-value=0.00035 Score=52.51 Aligned_cols=61 Identities=20% Similarity=0.295 Sum_probs=51.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCc
Q 004369 531 LIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDC 591 (758)
Q Consensus 531 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 591 (758)
+...+.+.|++++|.+.|++. ...| +...|..+...+...|++++|...++++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456788899999999999988 6667 567788999999999999999999999999999874
No 167
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.46 E-value=0.3 Score=54.44 Aligned_cols=217 Identities=12% Similarity=0.106 Sum_probs=122.6
Q ss_pred CCCCchhHHHHHHHHHHHcCCCCCcchHHHHHHHh--hcCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChHH
Q 004369 50 NSEPVRSLGFQEALSVLTEGPKVQTSSYVSLLQEC--VNRKSLSNAEIIHAHIVKTGSHQDFFVMTFLVNVYGKCGNMEE 127 (758)
Q Consensus 50 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 127 (758)
...+.+..|+....++++..| + ..|..++.++ .+.|..++|..+++.....+. .|..+...+...|...|+.++
T Consensus 20 ld~~qfkkal~~~~kllkk~P--n-~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHP--N-ALYAKVLKALSLFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCC--C-cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHhhhhH
Confidence 346677888888888776543 2 3466677764 477888888877777665553 377788888888888888999
Q ss_pred HHHHHccCCCCCcc--hHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccC----------ChHHHH
Q 004369 128 AQKVFDNLPRINVV--SWTSLISGYVQNSQPELAIHVFLDMLEAGNYPTNVTLGTALTACSSLE----------SIRLGK 195 (758)
Q Consensus 128 A~~~f~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~----------~~~~a~ 195 (758)
|..+++...+.++. -...+..+|++.+++.+-.+.--+|.+. +.-+.+.|=++++...+.. -+..|.
T Consensus 96 ~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~ 174 (932)
T KOG2053|consen 96 AVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAE 174 (932)
T ss_pred HHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHH
Confidence 98888887754333 3334445677776665433333333221 1223444434443332211 122344
Q ss_pred HHHHHHHHhC-CCCChhHHHHHHHHHhhcCChHHHHHHHhc-cC----CCCcchHHHHHHHHhhCCChhhHHHHHHHHHH
Q 004369 196 QIHAYVVKYQ-TEDDTSVGNSLCSLYSTCGSLNSAIKAFNR-IR----EKNVMSWTTVIGACGENGEAVQGLRFFSKMLS 269 (758)
Q Consensus 196 ~~~~~~~~~g-~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~-~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 269 (758)
...+.+++.+ ...+..-.-.-.......|++++|..++.. .. .-+...-|--+.-+...++|.+..++-.++..
T Consensus 175 ~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 175 KMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 4555554443 111111111222344456777777777722 11 12333334445556667777777777777766
Q ss_pred CC
Q 004369 270 EG 271 (758)
Q Consensus 270 ~g 271 (758)
.|
T Consensus 255 k~ 256 (932)
T KOG2053|consen 255 KG 256 (932)
T ss_pred hC
Confidence 54
No 168
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.43 E-value=0.00037 Score=52.96 Aligned_cols=52 Identities=13% Similarity=0.307 Sum_probs=40.1
Q ss_pred HHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369 568 RRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTRE 619 (758)
Q Consensus 568 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 619 (758)
...|++++|...++++++.+|+++..+..|+.+|.+.|++++|..+++.+..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3567788888888888888888888888888888888888888887777665
No 169
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.41 E-value=0.0021 Score=52.15 Aligned_cols=88 Identities=27% Similarity=0.337 Sum_probs=42.1
Q ss_pred HhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHH
Q 004369 499 CSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELG 576 (758)
Q Consensus 499 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a 576 (758)
+...|++++|..+++.+.+. .+.+...+..+...+...|++++|.+.+++. ...| +..+|..+...+...|+.+.|
T Consensus 10 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 87 (100)
T cd00189 10 YYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEA 87 (100)
T ss_pred HHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHH
Confidence 33444444444444444331 1112233444445555555555555555544 2222 233455555555556666666
Q ss_pred HHHHHHHhccCC
Q 004369 577 FYAAEQLLKLKP 588 (758)
Q Consensus 577 ~~~~~~~~~~~p 588 (758)
...++++++..|
T Consensus 88 ~~~~~~~~~~~~ 99 (100)
T cd00189 88 LEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHccCC
Confidence 666666555544
No 170
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.002 Score=62.52 Aligned_cols=102 Identities=13% Similarity=0.080 Sum_probs=88.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcC---ChhHHHHHHHHHhccCCCCchhHHH
Q 004369 522 KPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHG---NMELGFYAAEQLLKLKPKDCESYAM 596 (758)
Q Consensus 522 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~~~~~~~~ 596 (758)
+-|.+.|--|...|.+.|+.+.|..-|.+. .+.| +...+..+..++.... ...++..+++++++++|.|..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 446899999999999999999999999998 5555 5677777777765543 4678999999999999999999999
Q ss_pred HHHHhhhCCCchhHHHHHHHhhhCCCC
Q 004369 597 LLDIFVSAGRWEDVAVVKNLTREEKLS 623 (758)
Q Consensus 597 l~~~~~~~g~~~~a~~~~~~m~~~~~~ 623 (758)
|+-.+...|++.+|...++.|.+....
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999986543
No 171
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.36 E-value=0.0059 Score=61.33 Aligned_cols=143 Identities=17% Similarity=0.217 Sum_probs=102.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHH
Q 004369 455 ISWTSMITGFANHSLSHQALQLFEDMLLAG-VRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLID 533 (758)
Q Consensus 455 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 533 (758)
.+|-.++...-+.+..+.|..+|.+.++.+ ...+.....+++. +...++.+.|.++|+...+.+ ..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence 367778888888888899999999988543 2222333333332 333567777999999998854 456677889999
Q ss_pred HHHHcCCHHHHHHHHHHc-CCCCCH----HHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHh
Q 004369 534 MFVRLGCIEEAFDFIKKM-DFEPNE----VIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIF 601 (758)
Q Consensus 534 ~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 601 (758)
.+.+.|+.+.|..+|++. ..-|.. .+|...+.-=.+.|+.+....+.+++.+.-|++. ....+.+-|
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~-~~~~f~~ry 150 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN-SLELFSDRY 150 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS--HHHHHHCCT
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh-HHHHHHHHh
Confidence 999999999999999998 333433 4899999999999999999999999999888753 333344444
No 172
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.34 E-value=0.031 Score=59.28 Aligned_cols=125 Identities=14% Similarity=0.167 Sum_probs=68.1
Q ss_pred HhhhHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHH
Q 004369 429 LVNMYKKCGRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEA 508 (758)
Q Consensus 429 Li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 508 (758)
-..++...|+.++|..+. ..+|=.+-++++-+++-. .+..+...+...+-+...+.-|
T Consensus 709 AAEmLiSaGe~~KAi~i~------------------~d~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLA 766 (1081)
T KOG1538|consen 709 AAEMLISAGEHVKAIEIC------------------GDHGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLA 766 (1081)
T ss_pred HHHHhhcccchhhhhhhh------------------hcccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchH
Confidence 344555667777766643 233334444444444322 1233444444444455566667
Q ss_pred HHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCCHHH-HH----------HHHHHHHHcCChhHH
Q 004369 509 LGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEPNEVI-WS----------VFIAGCRRHGNMELG 576 (758)
Q Consensus 509 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~-~~----------~ll~~~~~~g~~~~a 576 (758)
-++|..|-. ..+++++....|+++||..+-++. .+.||... |. ---.++.+.|+..+|
T Consensus 767 aeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA 836 (1081)
T KOG1538|consen 767 AEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREA 836 (1081)
T ss_pred HHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHH
Confidence 777776632 235677777778888888777777 34455432 11 122345556666677
Q ss_pred HHHHHHHhc
Q 004369 577 FYAAEQLLK 585 (758)
Q Consensus 577 ~~~~~~~~~ 585 (758)
.++++++-.
T Consensus 837 ~~vLeQLtn 845 (1081)
T KOG1538|consen 837 VQVLEQLTN 845 (1081)
T ss_pred HHHHHHhhh
Confidence 776666643
No 173
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.0036 Score=62.76 Aligned_cols=160 Identities=11% Similarity=0.070 Sum_probs=116.4
Q ss_pred hHHHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HHhccccHHHHHHHHHHhhhhcCCCCCHHHH---
Q 004369 455 ISWTSM-ITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALA--ACSNAGMVYEALGYFEMMQKEYKIKPVMDHY--- 528 (758)
Q Consensus 455 ~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~--a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~--- 528 (758)
.+|-.+ ...+...|++++|...--..++. .++. .+..+++ ++-..++.+.|...|++.. .+.|+-..-
T Consensus 169 ~~a~~lka~cl~~~~~~~~a~~ea~~ilkl--d~~n-~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~ 242 (486)
T KOG0550|consen 169 FKAKLLKAECLAFLGDYDEAQSEAIDILKL--DATN-AEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSA 242 (486)
T ss_pred hHHHHhhhhhhhhcccchhHHHHHHHHHhc--ccch-hHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhH
Confidence 344433 23566789999998887777663 2221 1222222 3455778899999998875 345553221
Q ss_pred ----------HHHHHHHHHcCCHHHHHHHHHHc-CCCC-----CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCch
Q 004369 529 ----------MCLIDMFVRLGCIEEAFDFIKKM-DFEP-----NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCE 592 (758)
Q Consensus 529 ----------~~li~~~~~~g~~~~A~~~~~~m-~~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 592 (758)
.-=.+...+.|++.+|.+.+.+. .+.| +...|.....+..+.|+.++|+.-.+.+++++|.-..
T Consensus 243 ~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syik 322 (486)
T KOG0550|consen 243 SMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIK 322 (486)
T ss_pred hhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHH
Confidence 12234567899999999999988 5555 4445666677788899999999999999999999888
Q ss_pred hHHHHHHHhhhCCCchhHHHHHHHhhhC
Q 004369 593 SYAMLLDIFVSAGRWEDVAVVKNLTREE 620 (758)
Q Consensus 593 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 620 (758)
.|..-++++...++|++|.+-++...+.
T Consensus 323 all~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 323 ALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999988764
No 174
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.23 E-value=0.00042 Score=52.63 Aligned_cols=61 Identities=23% Similarity=0.315 Sum_probs=31.4
Q ss_pred HcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHH
Q 004369 537 RLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAML 597 (758)
Q Consensus 537 ~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 597 (758)
..|++++|++.|+++ ...| +..++..+...|.+.|++++|...++++...+|+++..+..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~ 65 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL 65 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 345555555555555 3333 444455555555555555555555555555555554444333
No 175
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.20 E-value=0.33 Score=49.45 Aligned_cols=118 Identities=15% Similarity=0.200 Sum_probs=83.5
Q ss_pred hhhHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHH
Q 004369 430 VNMYKKCGRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEAL 509 (758)
Q Consensus 430 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 509 (758)
+.-+...|+...|.++-.+..-+|-.-|-..+.+|+..++|++-..+... +-.++-|..++.+|.+.|...+|.
T Consensus 184 i~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA~ 257 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEAS 257 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHHH
Confidence 44455678888888888888888888888899999999998877665432 123477888888888888888888
Q ss_pred HHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004369 510 GYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKMDFEPNEVIWSVFIAGC 567 (758)
Q Consensus 510 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~ 567 (758)
.+...+. +.--+.+|.++|++.+|.+.--+.+ |...+..+...|
T Consensus 258 ~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~k---d~~~L~~i~~~~ 301 (319)
T PF04840_consen 258 KYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKEK---DIDLLKQILKRC 301 (319)
T ss_pred HHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHcC---CHHHHHHHHHHC
Confidence 8876631 1345778888888888877655432 444444444333
No 176
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.19 E-value=0.0011 Score=52.75 Aligned_cols=80 Identities=23% Similarity=0.319 Sum_probs=44.3
Q ss_pred cCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCC-HHHHHHHHHHHHHcCCHHHH
Q 004369 467 HSLSHQALQLFEDMLLAGVR-PNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPV-MDHYMCLIDMFVRLGCIEEA 544 (758)
Q Consensus 467 ~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A 544 (758)
.|+++.|+.+|+++.+.... |+...+..+..++.+.|++++|..+++.. + ..|+ ....-.+..+|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~-~---~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKL-K---LDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCH-T---HHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHh-C---CCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 46677777777777664321 23334444566667777777777777662 1 1222 23333446666677777777
Q ss_pred HHHHHH
Q 004369 545 FDFIKK 550 (758)
Q Consensus 545 ~~~~~~ 550 (758)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 766654
No 177
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.17 E-value=0.00076 Score=51.39 Aligned_cols=65 Identities=23% Similarity=0.387 Sum_probs=54.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcC-ChhHHHHHHHHHhccCC
Q 004369 524 VMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHG-NMELGFYAAEQLLKLKP 588 (758)
Q Consensus 524 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p 588 (758)
+...|..+...+...|++++|+..|++. ...| +...|..+..++...| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3567788888888999999999998887 5566 5667888889999998 79999999999998887
No 178
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.10 E-value=0.0093 Score=54.94 Aligned_cols=63 Identities=13% Similarity=0.098 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccccHHHHHHHHHHhhh
Q 004369 455 ISWTSMITGFANHSLSHQALQLFEDMLLAGVRPN--QVTFVGALAACSNAGMVYEALGYFEMMQK 517 (758)
Q Consensus 455 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 517 (758)
..|..+...+...|++++|+..|++.......|. ..++..+...+.+.|++++|...++...+
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455555666666666666666666655322221 23455555555666666666666655543
No 179
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.10 E-value=0.41 Score=51.66 Aligned_cols=144 Identities=17% Similarity=0.190 Sum_probs=70.7
Q ss_pred hhhHHhcCCHHHHHHHHHhcCCCCh---hHHHHHHHHH----HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 004369 430 VNMYKKCGRIERASRVFVEMSTRTL---ISWTSMITGF----ANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNA 502 (758)
Q Consensus 430 i~~y~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~----~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 502 (758)
|.++.+.|+.-+|.+++.+|.++.. +.|..+=..| .-..+..++++-.++....|...|... +...
T Consensus 930 Ie~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~-------lles 1002 (1189)
T KOG2041|consen 930 IEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATD-------LLES 1002 (1189)
T ss_pred HHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhh-------hhhh
Confidence 5567777877777777777763321 1111111111 111223344444444444554433322 2233
Q ss_pred ccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc----CCCCCHHHHHHHHHHHHHcCChhHHHH
Q 004369 503 GMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM----DFEPNEVIWSVFIAGCRRHGNMELGFY 578 (758)
Q Consensus 503 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~ll~~~~~~g~~~~a~~ 578 (758)
|...++-.+.+..-. | ....||-.|..--...|.++.|+..--.. .+-|-..+|..|.-+-+....+...-+
T Consensus 1003 ~~l~~~~ri~~n~Wr--g--AEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSK 1078 (1189)
T KOG2041|consen 1003 GLLAEQSRILENTWR--G--AEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSK 1078 (1189)
T ss_pred hhhhhHHHHHHhhhh--h--HHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHH
Confidence 444444444443322 1 23456666666667788888887754433 455556666666554444444444444
Q ss_pred HHHHHh
Q 004369 579 AAEQLL 584 (758)
Q Consensus 579 ~~~~~~ 584 (758)
++-++-
T Consensus 1079 AfmkLe 1084 (1189)
T KOG2041|consen 1079 AFMKLE 1084 (1189)
T ss_pred HHHHHH
Confidence 444443
No 180
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.10 E-value=0.0013 Score=50.80 Aligned_cols=56 Identities=20% Similarity=0.184 Sum_probs=45.7
Q ss_pred HHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhhC
Q 004369 565 AGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREE 620 (758)
Q Consensus 565 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 620 (758)
..+.+.++++.|.++++++++++|+++..+...+.+|.+.|++++|.+.++...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45677888888888888888888888888888888888888888888888877753
No 181
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.04 E-value=0.042 Score=55.45 Aligned_cols=116 Identities=17% Similarity=0.228 Sum_probs=72.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc-ccHHHHHHHHHHhhhhcCCCCC----HHHHHHHHH
Q 004369 459 SMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNA-GMVYEALGYFEMMQKEYKIKPV----MDHYMCLID 533 (758)
Q Consensus 459 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~ 533 (758)
..+..|...|++..|-.++.++ ...|... |++++|.++|++..+-+..... ...+..+..
T Consensus 99 ~A~~~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~ 163 (282)
T PF14938_consen 99 KAIEIYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAAD 163 (282)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHH
Confidence 3455566666666665555544 3356666 8888888888887663322222 345667788
Q ss_pred HHHHcCCHHHHHHHHHHcC---CC-----CCHH-HHHHHHHHHHHcCChhHHHHHHHHHhccCCC
Q 004369 534 MFVRLGCIEEAFDFIKKMD---FE-----PNEV-IWSVFIAGCRRHGNMELGFYAAEQLLKLKPK 589 (758)
Q Consensus 534 ~~~~~g~~~~A~~~~~~m~---~~-----p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 589 (758)
.+.+.|++++|.++|++.. .. .+.. .+...+-.+...||...|...+++....+|.
T Consensus 164 l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 164 LYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp HHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred HHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 8999999999999998871 11 1111 1223333556678999999999999988874
No 182
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.01 E-value=0.00042 Score=43.81 Aligned_cols=32 Identities=22% Similarity=0.632 Sum_probs=30.4
Q ss_pred HHHHhccCCCCchhHHHHHHHhhhCCCchhHH
Q 004369 580 AEQLLKLKPKDCESYAMLLDIFVSAGRWEDVA 611 (758)
Q Consensus 580 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 611 (758)
++++++++|+++.+|..|+.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 68899999999999999999999999999986
No 183
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.99 E-value=0.0046 Score=61.77 Aligned_cols=258 Identities=13% Similarity=0.085 Sum_probs=162.0
Q ss_pred chhhcCCChhHHHHHHHHhHhCCCC---CCHHHHHHHHHHHhcccchHHHHHHHHHH--HHc--CC-CChHHHHhHHhhh
Q 004369 361 DDLSAHNGGTEALSIFSKLNSSGMK---PDLYTFSSILTICSRLVALEQGEQIHALT--LKT--GF-LSDVVVGTALVNM 432 (758)
Q Consensus 361 ~~l~~~g~~~~A~~l~~~m~~~g~~---p~~~t~~~ll~a~~~~~~~~~a~~i~~~~--~~~--~~-~~~~~~~~~Li~~ 432 (758)
.+||+.|+....+.+|+..++.|-. .=+..|..+-.+|.-++++++|.++|..= +.. |- .........|.+.
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 3466699999999999999987732 22345666777888889999999987532 111 11 0112223334445
Q ss_pred HHhcCCHHHHHHHHHhcC-------CC--ChhHHHHHHHHHHhcCC--------------------HHHHHHHHHHHHH-
Q 004369 433 YKKCGRIERASRVFVEMS-------TR--TLISWTSMITGFANHSL--------------------SHQALQLFEDMLL- 482 (758)
Q Consensus 433 y~~~g~~~~A~~~~~~~~-------~~--~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~~- 482 (758)
+--.|.+++|...-.+-. .+ ....+-.+...|-..|+ .+.|.+.|.+=++
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 555677777765432211 11 11233334455544332 2334444433221
Q ss_pred ---cCCC-CCHHHHHHHHHHHhccccHHHHHHHHHHh---hhhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHc---
Q 004369 483 ---AGVR-PNQVTFVGALAACSNAGMVYEALGYFEMM---QKEYKIKPV-MDHYMCLIDMFVRLGCIEEAFDFIKKM--- 551 (758)
Q Consensus 483 ---~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~---~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m--- 551 (758)
.|-. .-...|..|...|.-.|++++|+..++.- .+++|-... ...++.|.+++.-.|+++.|.+.++..
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 1100 01234555555566678999999887642 234554432 456788999999999999999998865
Q ss_pred ----CCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHhccC------CCCchhHHHHHHHhhhCCCchhHHHHHHHhh
Q 004369 552 ----DFE-PNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLK------PKDCESYAMLLDIFVSAGRWEDVAVVKNLTR 618 (758)
Q Consensus 552 ----~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 618 (758)
+-+ ...-+.-+|...|....+++.|+.++.+-+.+. .....++..|+++|...|..+.|..+.+.-.
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 222 234567788999999899999998887766532 2345688999999999999999988766544
No 184
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.96 E-value=0.12 Score=46.33 Aligned_cols=132 Identities=11% Similarity=0.077 Sum_probs=100.9
Q ss_pred CCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCC---HHHH
Q 004369 485 VRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEPN---EVIW 560 (758)
Q Consensus 485 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~---~~~~ 560 (758)
..|+...-..|..+....|+..+|...|++... --+.-|....-.+..+....+++.+|...+++. ...|+ +...
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 467777777788888999999999999998876 133456777778888888889999999888876 22222 2234
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhh
Q 004369 561 SVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTR 618 (758)
Q Consensus 561 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 618 (758)
..+...+...|..+.|+..++.++.-.|+ +..-...+.++.++|+.+++..-...+.
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 46777888999999999999999998886 5667777888999999888775444443
No 185
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.95 E-value=0.49 Score=47.70 Aligned_cols=243 Identities=14% Similarity=0.107 Sum_probs=161.3
Q ss_pred CCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHH--hcccchHHHHHHHHHHHHcCCCChHHHH--hHHhhhHHhcCCHHH
Q 004369 366 HNGGTEALSIFSKLNSSGMKPDLYTFSSILTIC--SRLVALEQGEQIHALTLKTGFLSDVVVG--TALVNMYKKCGRIER 441 (758)
Q Consensus 366 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~--~~~~~~~~a~~i~~~~~~~~~~~~~~~~--~~Li~~y~~~g~~~~ 441 (758)
.|+...|.++-.+-... +..|..-+..++.+- .-.|+.+.+++-|+-|... |..... ..|.----+.|..+.
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Garea 172 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREA 172 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHH
Confidence 67777777666554322 455666666666654 3468999999999999862 332222 122222346788888
Q ss_pred HHHHHHhcCCC---ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHH--HHHHHHHHHhc---cccHHHHHHHH
Q 004369 442 ASRVFVEMSTR---TLISWTSMITGFANHSLSHQALQLFEDMLLAG-VRPNQV--TFVGALAACSN---AGMVYEALGYF 512 (758)
Q Consensus 442 A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~--t~~~ll~a~~~---~g~~~~a~~~~ 512 (758)
|...-++.-.. -...|.+.+...+..|+++.|+++++.-+... +.+|.. .-..|+.+-.. ..+...|...-
T Consensus 173 Ar~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A 252 (531)
T COG3898 173 ARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDA 252 (531)
T ss_pred HHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 88887776532 33678899999999999999999998876643 556632 22334433211 22455555554
Q ss_pred HHhhhhcCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCChhHH-HHHHHHHhccCCC
Q 004369 513 EMMQKEYKIKPVMDHY-MCLIDMFVRLGCIEEAFDFIKKM-DFEPNEVIWSVFIAGCRRHGNMELG-FYAAEQLLKLKPK 589 (758)
Q Consensus 513 ~~~~~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a-~~~~~~~~~~~p~ 589 (758)
.+. ..+.||..-- -.-..+|.+.|++.++-.+++.+ ...|.+.+|.... ..+.|+.-.. .+-.+++..+.|+
T Consensus 253 ~~a---~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~--~ar~gdta~dRlkRa~~L~slk~n 327 (531)
T COG3898 253 LEA---NKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYV--RARSGDTALDRLKRAKKLESLKPN 327 (531)
T ss_pred HHH---hhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHH--HhcCCCcHHHHHHHHHHHHhcCcc
Confidence 444 3566764322 23357889999999999999999 7778777765443 4456664333 2345667788999
Q ss_pred CchhHHHHHHHhhhCCCchhHHHHHHHh
Q 004369 590 DCESYAMLLDIFVSAGRWEDVAVVKNLT 617 (758)
Q Consensus 590 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m 617 (758)
+.+....++..-...|.+..|..--+..
T Consensus 328 naes~~~va~aAlda~e~~~ARa~Aeaa 355 (531)
T COG3898 328 NAESSLAVAEAALDAGEFSAARAKAEAA 355 (531)
T ss_pred chHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 9999999999999999988776554444
No 186
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.94 E-value=0.11 Score=55.28 Aligned_cols=199 Identities=15% Similarity=0.111 Sum_probs=97.2
Q ss_pred HHHHHHHhcccCChHHHHHH--HHHHHHhCCCCChhHHHHHHHHHhhcCChHHHHHHHhccCCCCcchHHHHHHHHhhCC
Q 004369 178 LGTALTACSSLESIRLGKQI--HAYVVKYQTEDDTSVGNSLCSLYSTCGSLNSAIKAFNRIREKNVMSWTTVIGACGENG 255 (758)
Q Consensus 178 ~~~ll~~~~~~~~~~~a~~~--~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g 255 (758)
++..=++|.+.+++..-+-+ ++.+.+.|-.|+... +...++-.|++.+|.++|.+ +|
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~------------------~G 659 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR------------------SG 659 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH------------------cC
Confidence 44444455555554443333 344556666566544 33456667888888888754 45
Q ss_pred ChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHc
Q 004369 256 EAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFD 335 (758)
Q Consensus 256 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 335 (758)
.-..|+++|..|+-- -..+-+...|+.++-+.+...-... ..+..--.+-..++...|+.++|..+.-
T Consensus 660 ~enRAlEmyTDlRMF----------D~aQE~~~~g~~~eKKmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i~~ 727 (1081)
T KOG1538|consen 660 HENRALEMYTDLRMF----------DYAQEFLGSGDPKEKKMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEICG 727 (1081)
T ss_pred chhhHHHHHHHHHHH----------HHHHHHhhcCChHHHHHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhhhh
Confidence 556666666665421 1112222233333333332221111 0111111233445555566666654431
Q ss_pred cCCCCCeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHH
Q 004369 336 GMSHVNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTL 415 (758)
Q Consensus 336 ~m~~~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~ 415 (758)
+ +|-.+-++++-+++-. .+..+...+..-+-+...+..|.+||..|-
T Consensus 728 d-----------------------------~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~g 774 (1081)
T KOG1538|consen 728 D-----------------------------HGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMG 774 (1081)
T ss_pred c-----------------------------ccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchHHHHHHHhc
Confidence 1 3333334443333321 223334344444445555666666666553
Q ss_pred HcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCC
Q 004369 416 KTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMST 451 (758)
Q Consensus 416 ~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~ 451 (758)
+. .+++++....+++.+|..+-++.++
T Consensus 775 D~---------ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 775 DL---------KSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred cH---------HHHhhheeecccchHhHhhhhhCcc
Confidence 32 3466777777888888877777664
No 187
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.92 E-value=0.023 Score=50.74 Aligned_cols=106 Identities=13% Similarity=0.199 Sum_probs=92.4
Q ss_pred HhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc---CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCC-
Q 004369 514 MMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM---DFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPK- 589 (758)
Q Consensus 514 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~- 589 (758)
+..++..+.|++.+--.|...+.+.|+..||...|++. .+.-|......+..+....++...|...++++.+.+|.
T Consensus 78 ea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~ 157 (251)
T COG4700 78 EATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAF 157 (251)
T ss_pred HHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCcc
Confidence 33444566799888889999999999999999999998 34558888899999999999999999999999999875
Q ss_pred -CchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369 590 -DCESYAMLLDIFVSAGRWEDVAVVKNLTRE 619 (758)
Q Consensus 590 -~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 619 (758)
.|.....++..|...|+..+|+..++...+
T Consensus 158 r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 158 RSPDGHLLFARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred CCCCchHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 567788899999999999999999998875
No 188
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.90 E-value=0.099 Score=51.18 Aligned_cols=173 Identities=11% Similarity=0.076 Sum_probs=103.3
Q ss_pred HhhhHHhcCCHHHHHHHHHhcCCCCh---hH---HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-
Q 004369 429 LVNMYKKCGRIERASRVFVEMSTRTL---IS---WTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSN- 501 (758)
Q Consensus 429 Li~~y~~~g~~~~A~~~~~~~~~~~~---~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~- 501 (758)
....+.+.|++++|.+.|+++....+ .. .-.++.+|.+.+++++|+..|++..+.-..-...-+...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 34445567888888888888763322 22 234566778888888999888888874222123333333333321
Q ss_pred -c------------------ccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCHHHHHH
Q 004369 502 -A------------------GMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKMDFEPNEVIWSV 562 (758)
Q Consensus 502 -~------------------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ 562 (758)
. ....+|...|+.+++.+ |+ ..-..+|...+..+...--..- -.
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y---P~-------------S~ya~~A~~rl~~l~~~la~~e-~~ 180 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY---PN-------------SQYTTDATKRLVFLKDRLAKYE-LS 180 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC---cC-------------ChhHHHHHHHHHHHHHHHHHHH-HH
Confidence 1 11233445555554433 32 2223344433333210000000 13
Q ss_pred HHHHHHHcCChhHHHHHHHHHhccCCCC---chhHHHHHHHhhhCCCchhHHHHHHHhh
Q 004369 563 FIAGCRRHGNMELGFYAAEQLLKLKPKD---CESYAMLLDIFVSAGRWEDVAVVKNLTR 618 (758)
Q Consensus 563 ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 618 (758)
+..-|.+.|.+.-|..-++.+++.-|+. ..+...+.++|...|..++|.++.....
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 4555788899999999999999988764 4567788899999999999998877654
No 189
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.86 E-value=0.14 Score=52.65 Aligned_cols=160 Identities=14% Similarity=0.106 Sum_probs=102.7
Q ss_pred HHhhhHHhcCCHHHHHHHHHhcCCC---Ch----hHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004369 428 ALVNMYKKCGRIERASRVFVEMSTR---TL----ISWTSMITGFAN---HSLSHQALQLFEDMLLAGVRPNQVTFVGALA 497 (758)
Q Consensus 428 ~Li~~y~~~g~~~~A~~~~~~~~~~---~~----~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 497 (758)
.|+-.|....+++...++.+.+... ++ ..--...-++.+ .|+.++|++++..+....-.++..||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444577788888888888877643 11 122233445556 7889999999988766666777777777766
Q ss_pred HHhc---------cccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHH----HHHHHH---HHc----C---CC
Q 004369 498 ACSN---------AGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIE----EAFDFI---KKM----D---FE 554 (758)
Q Consensus 498 a~~~---------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~----~A~~~~---~~m----~---~~ 554 (758)
.|-. ....++|...|.+. +.+.|+..+--.++.++...|... +..++- ... + -.
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kg---Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKG---FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHH---HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 5522 23477788777765 456676544334444444555322 222222 111 1 22
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCC
Q 004369 555 PNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKD 590 (758)
Q Consensus 555 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 590 (758)
.|-..+.+++.++.-.||.+.|.+++++++++.|+.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 345556889999999999999999999999998764
No 190
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.86 E-value=0.037 Score=60.46 Aligned_cols=134 Identities=10% Similarity=0.021 Sum_probs=98.5
Q ss_pred CCCCCHHHHHHHHHHHhcc-----ccHHHHHHHHHHhhhhcCCCCC-HHHHHHHHHHHHHc--------CCHHHHHHHHH
Q 004369 484 GVRPNQVTFVGALAACSNA-----GMVYEALGYFEMMQKEYKIKPV-MDHYMCLIDMFVRL--------GCIEEAFDFIK 549 (758)
Q Consensus 484 g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~--------g~~~~A~~~~~ 549 (758)
+.+.|...|...+.+.... +..+.|..+|+++.+ ..|+ ...|..+..+|... ++++++.+..+
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~---ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK---SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 4566778888888875442 347799999999975 4676 44555544444322 23445555555
Q ss_pred Hc---CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhhCC
Q 004369 550 KM---DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREEK 621 (758)
Q Consensus 550 ~m---~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 621 (758)
+. +..| +..++..+.-.....|++++|...++++++++|. ...|..++.+|...|+.++|...+++....+
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 53 2233 5567877777777789999999999999999994 7899999999999999999999999887644
No 191
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.86 E-value=0.012 Score=49.87 Aligned_cols=85 Identities=15% Similarity=0.081 Sum_probs=50.4
Q ss_pred HHHHHHcCCHHHHHHHHHHc---CCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHhccCCC---CchhHHHHHHHhhh
Q 004369 532 IDMFVRLGCIEEAFDFIKKM---DFEPN--EVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPK---DCESYAMLLDIFVS 603 (758)
Q Consensus 532 i~~~~~~g~~~~A~~~~~~m---~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 603 (758)
..++-..|+.++|+.+|++. +.... ...+-.+.+.++..|++++|..++++.++..|+ +......++-++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 34455566666666666655 22221 224555666666677777777777766666565 44555556666667
Q ss_pred CCCchhHHHHHHH
Q 004369 604 AGRWEDVAVVKNL 616 (758)
Q Consensus 604 ~g~~~~a~~~~~~ 616 (758)
.|+.++|...+-.
T Consensus 88 ~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 88 LGRPKEALEWLLE 100 (120)
T ss_pred CCCHHHHHHHHHH
Confidence 7777776665543
No 192
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.83 E-value=0.017 Score=60.52 Aligned_cols=82 Identities=17% Similarity=0.196 Sum_probs=59.4
Q ss_pred hHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 004369 243 SWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYL 322 (758)
Q Consensus 243 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 322 (758)
+..++|+.|.+.|..++++.++..=..-|+-||.+|++.+|..+.+.|++..|.++...|...+...+..++.--+..+.
T Consensus 105 t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~ 184 (429)
T PF10037_consen 105 THHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCY 184 (429)
T ss_pred cHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Confidence 44577777777777777777777777777778888888888888888888777777777777766666665555555555
Q ss_pred hc
Q 004369 323 KC 324 (758)
Q Consensus 323 ~~ 324 (758)
+.
T Consensus 185 ~~ 186 (429)
T PF10037_consen 185 KY 186 (429)
T ss_pred Hh
Confidence 55
No 193
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.82 E-value=0.0042 Score=47.84 Aligned_cols=65 Identities=20% Similarity=0.392 Sum_probs=54.2
Q ss_pred HHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHH
Q 004369 532 IDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAM 596 (758)
Q Consensus 532 i~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 596 (758)
-..|.+.+++++|+++++++ ...| +...|......+...|++++|...++++++..|+++.....
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 35678899999999999988 6667 56678888889999999999999999999999987665443
No 194
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.82 E-value=0.015 Score=60.92 Aligned_cols=120 Identities=10% Similarity=0.039 Sum_probs=75.3
Q ss_pred CCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCC-C-----ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 004369 418 GFLSDVVVGTALVNMYKKCGRIERASRVFVEMST-R-----TLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVT 491 (758)
Q Consensus 418 ~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 491 (758)
+.+.+......+++......+++.+..++-+... + -..+..++|..|.+.|..++++++++.=...|+-||..|
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 3344555555666666666667777776666542 1 123445777777777777777777777777777777777
Q ss_pred HHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHc
Q 004369 492 FVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRL 538 (758)
Q Consensus 492 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 538 (758)
|+.|+..+.+.|++..|.++...|..+ ....+..++.--+..+.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQ-e~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQ-EEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHh
Confidence 777777777777777777777766553 4434444444444444443
No 195
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.82 E-value=0.042 Score=48.55 Aligned_cols=93 Identities=9% Similarity=0.007 Sum_probs=68.5
Q ss_pred hHHhhhHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccc
Q 004369 427 TALVNMYKKCGRIERASRVFVEMS---TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAG 503 (758)
Q Consensus 427 ~~Li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 503 (758)
-++...+...|++++|.++|+-+. ..+..-|-.|...+-..|++++|+..|....... +-|...+-.+..++...|
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcC
Confidence 344555667888888888888765 3355677788888888888888888888888753 233666777777888888
Q ss_pred cHHHHHHHHHHhhhhcC
Q 004369 504 MVYEALGYFEMMQKEYK 520 (758)
Q Consensus 504 ~~~~a~~~~~~~~~~~~ 520 (758)
+.+.|++.|+......+
T Consensus 118 ~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 118 NVCYAIKALKAVVRICG 134 (157)
T ss_pred CHHHHHHHHHHHHHHhc
Confidence 88888888888776433
No 196
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.81 E-value=0.016 Score=58.17 Aligned_cols=129 Identities=12% Similarity=0.131 Sum_probs=99.8
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHc--CCCCCHHHHHHHHHH
Q 004369 490 VTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVR-LGCIEEAFDFIKKM--DFEPNEVIWSVFIAG 566 (758)
Q Consensus 490 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~ 566 (758)
.+|..++..+-+.+.++.|+.+|..+.+.... +...|-....+-.+ .++.+.|.++|+.. .+..+...|...+.-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~--~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRC--TYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS---THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 46888889999999999999999999863223 34556555666445 45666699999998 444478889999999
Q ss_pred HHHcCChhHHHHHHHHHhccCCCCc---hhHHHHHHHhhhCCCchhHHHHHHHhhhC
Q 004369 567 CRRHGNMELGFYAAEQLLKLKPKDC---ESYAMLLDIFVSAGRWEDVAVVKNLTREE 620 (758)
Q Consensus 567 ~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 620 (758)
+...++.+.|..++++.+..-|.+. ..|...++.=.+.|+++.+.++.+.+.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999876644 57888888888999999999999888764
No 197
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.80 E-value=0.024 Score=52.50 Aligned_cols=105 Identities=22% Similarity=0.175 Sum_probs=73.4
Q ss_pred CCCHHHHHHHHHHHh-----cccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCCCChhHHHH
Q 004369 385 KPDLYTFSSILTICS-----RLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMSTRTLISWTS 459 (758)
Q Consensus 385 ~p~~~t~~~ll~a~~-----~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~ 459 (758)
..|..+|..++..+. +.|.++-....+..|.+.|+..|..+|+.|++.+=| |.+- -..+|+.
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~----------- 110 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQA----------- 110 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHH-----------
Confidence 557778888887775 347788888889999999999999999999998875 3322 1111111
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccc
Q 004369 460 MITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGM 504 (758)
Q Consensus 460 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 504 (758)
+.. -...+-+-|++++++|...|+.||..|+..++..+++.+.
T Consensus 111 ~F~--hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 111 EFM--HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred Hhc--cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 111 1123456678888888888888888888888887766553
No 198
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.74 E-value=0.018 Score=53.33 Aligned_cols=97 Identities=13% Similarity=0.174 Sum_probs=72.8
Q ss_pred HHHHHhc--CCCChhHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc-------------
Q 004369 443 SRVFVEM--STRTLISWTSMITGFANH-----SLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNA------------- 502 (758)
Q Consensus 443 ~~~~~~~--~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~------------- 502 (758)
...|+.. ..+|-.+|..++..|.+. |..+=....++.|.+-|+.-|..+|+.||+.+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3445554 356667777777777643 66777777888888889999999999998887542
Q ss_pred ---ccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCC
Q 004369 503 ---GMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGC 540 (758)
Q Consensus 503 ---g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 540 (758)
.+-+-|++++++|.. +|+.||.+++..+++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMEN-NGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHhccccH
Confidence 234568888999976 6999999999999998887764
No 199
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.73 E-value=0.0053 Score=63.49 Aligned_cols=63 Identities=13% Similarity=-0.045 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchh---HHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369 557 EVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCES---YAMLLDIFVSAGRWEDVAVVKNLTRE 619 (758)
Q Consensus 557 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~ 619 (758)
...|+.+..+|...|++++|...++++++++|++... |..++.+|...|+.++|...+++..+
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344444444444444445554444444444444422 44444444444554444444444443
No 200
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.69 E-value=1.4 Score=48.51 Aligned_cols=337 Identities=11% Similarity=0.021 Sum_probs=167.5
Q ss_pred cCCCCChhhHHH-----HHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHhhcC---ChHHHHHHHhccCC--
Q 004369 169 AGNYPTNVTLGT-----ALTACSSLESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCG---SLNSAIKAFNRIRE-- 238 (758)
Q Consensus 169 ~g~~p~~~t~~~-----ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g---~~~~A~~~f~~~~~-- 238 (758)
-|+..+..-|.. ++.-+...+.+..|.++-..+-..-... ..++.....-+.+.. +-+.+..+=+++..
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~ 504 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL 504 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccC
Confidence 355544444433 3444455566666666655553211111 456666666666653 22333444444444
Q ss_pred CCcchHHHHHHHHhhCCChhhHHHHHHHHHHCCC----CCChhhHHHHHHHHcccCChHHHHHHHHHHHHhCCCCchhHH
Q 004369 239 KNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGI----QPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVR 314 (758)
Q Consensus 239 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~----~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 314 (758)
...++|..+.+---+.|+.+-|..+++.=...+- -.+..-+...+.-+...|+.+...++.-.+.+.-.
T Consensus 505 ~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~------- 577 (829)
T KOG2280|consen 505 TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLN------- 577 (829)
T ss_pred CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHH-------
Confidence 4566788888777788888888877664322211 01222344555666666766666666555443210
Q ss_pred HHHHHHHHhcCCHHHHHHHHccCCC-CCeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHH--HhH----hCCCCCC
Q 004369 315 NSIMYLYLKCGLVDEAQKLFDGMSH-VNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFS--KLN----SSGMKPD 387 (758)
Q Consensus 315 ~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~--~m~----~~g~~p~ 387 (758)
.-+...-..+...|..+|.+..+ .|.. .+-..| + .++-.+++.-|. ... ..|..|+
T Consensus 578 --~s~l~~~l~~~p~a~~lY~~~~r~~~~~---~l~d~y-~-----------q~dn~~~~a~~~~q~~~~~~~~~~r~~~ 640 (829)
T KOG2280|consen 578 --RSSLFMTLRNQPLALSLYRQFMRHQDRA---TLYDFY-N-----------QDDNHQALASFHLQASYAAETIEGRIPA 640 (829)
T ss_pred --HHHHHHHHHhchhhhHHHHHHHHhhchh---hhhhhh-h-----------cccchhhhhhhhhhhhhhhhhhcccchh
Confidence 00001111122233333333221 1110 000111 1 222222222211 100 1122333
Q ss_pred HHHHHHHHHHHhcccchHHHHHHHHH----------HH-HcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCCCChhH
Q 004369 388 LYTFSSILTICSRLVALEQGEQIHAL----------TL-KTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMSTRTLIS 456 (758)
Q Consensus 388 ~~t~~~ll~a~~~~~~~~~a~~i~~~----------~~-~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~~~ 456 (758)
....-.+|++........+..+. +. +.|....-.+.+--+.-+...|+..+|.++-.+.+-+|-..
T Consensus 641 ---lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~ 717 (829)
T KOG2280|consen 641 ---LKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRL 717 (829)
T ss_pred ---HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhh
Confidence 23333444444432222221111 11 11211111122222333445688888888888888888877
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH
Q 004369 457 WTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFV 536 (758)
Q Consensus 457 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 536 (758)
|-.-+.+++..+++++-+++-+.+. .+.-|.-...+|.+.|+.++|.+++.+.. |.. -.+.+|.
T Consensus 718 ~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~---~l~-------ekv~ay~ 781 (829)
T KOG2280|consen 718 WWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG---GLQ-------EKVKAYL 781 (829)
T ss_pred HHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccC---ChH-------HHHHHHH
Confidence 7777888888888877666655443 14556667778888888888888876552 211 3577788
Q ss_pred HcCCHHHHHHHHH
Q 004369 537 RLGCIEEAFDFIK 549 (758)
Q Consensus 537 ~~g~~~~A~~~~~ 549 (758)
+.|++.+|.++--
T Consensus 782 ~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 782 RVGDVKEAADLAA 794 (829)
T ss_pred HhccHHHHHHHHH
Confidence 8888888776543
No 201
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.69 E-value=0.012 Score=58.12 Aligned_cols=93 Identities=13% Similarity=0.064 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHc-CCCCCH----HHHHHHHHHHHHcCChhHHHHHHHHHhccCCCC---chhHHHHH
Q 004369 527 HYMCLIDMFVRLGCIEEAFDFIKKM-DFEPNE----VIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKD---CESYAMLL 598 (758)
Q Consensus 527 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~ 598 (758)
.|..-+..+.+.|++++|...|+.+ ...|+. ..+--+...+...|++++|...|+++++..|++ +..+..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 3444444445556666666666655 223322 345556666666666666666666666665553 33444456
Q ss_pred HHhhhCCCchhHHHHHHHhhh
Q 004369 599 DIFVSAGRWEDVAVVKNLTRE 619 (758)
Q Consensus 599 ~~~~~~g~~~~a~~~~~~m~~ 619 (758)
.+|...|++++|.++++...+
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 666666777777666666654
No 202
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.66 E-value=0.17 Score=54.37 Aligned_cols=32 Identities=16% Similarity=0.049 Sum_probs=22.7
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHccCCC
Q 004369 308 ASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSH 339 (758)
Q Consensus 308 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 339 (758)
.|.+..|..|...-.+.-.++.|+..|-+..+
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~d 720 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGD 720 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhcc
Confidence 67778888887777777777777776655543
No 203
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.65 E-value=0.031 Score=45.70 Aligned_cols=81 Identities=12% Similarity=0.211 Sum_probs=61.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHhccc--------cHHHHHHHHHHhhhhcCCCCCHH
Q 004369 456 SWTSMITGFANHSLSHQALQLFEDMLLAGV-RPNQVTFVGALAACSNAG--------MVYEALGYFEMMQKEYKIKPVMD 526 (758)
Q Consensus 456 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~g--------~~~~a~~~~~~~~~~~~~~p~~~ 526 (758)
+-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+..+.. ++-+.+.+++.|... +++|+.+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHH
Confidence 334456666677899999999999999999 899999999998766532 345567778888774 7888888
Q ss_pred HHHHHHHHHHH
Q 004369 527 HYMCLIDMFVR 537 (758)
Q Consensus 527 ~~~~li~~~~~ 537 (758)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 88888876654
No 204
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.65 E-value=0.24 Score=49.97 Aligned_cols=138 Identities=15% Similarity=0.275 Sum_probs=79.8
Q ss_pred HHhHHhhhHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhc-CCHHHHHHHHHHHHHc----CCCCC--HHHHHHHHH
Q 004369 425 VGTALVNMYKKCGRIERASRVFVEMSTRTLISWTSMITGFANH-SLSHQALQLFEDMLLA----GVRPN--QVTFVGALA 497 (758)
Q Consensus 425 ~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~----g~~p~--~~t~~~ll~ 497 (758)
.+...++.|.+.|++..|-+++.+ +...|... |++++|++.|++..+. | .+. ..++..+..
T Consensus 96 ~~~~A~~~y~~~G~~~~aA~~~~~-----------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~ 163 (282)
T PF14938_consen 96 CYEKAIEIYREAGRFSQAAKCLKE-----------LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAAD 163 (282)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHH-----------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHH-----------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHH
Confidence 344455667777777777665443 45566666 7888888888877652 2 221 334566667
Q ss_pred HHhccccHHHHHHHHHHhhhhcC----CCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCC------HHHHHHHHH
Q 004369 498 ACSNAGMVYEALGYFEMMQKEYK----IKPVM-DHYMCLIDMFVRLGCIEEAFDFIKKM-DFEPN------EVIWSVFIA 565 (758)
Q Consensus 498 a~~~~g~~~~a~~~~~~~~~~~~----~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~------~~~~~~ll~ 565 (758)
.+.+.|++++|.++|+++....- ...++ ..|-..+-++...|+...|.+.+++. ...|. ......|+.
T Consensus 164 l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~ 243 (282)
T PF14938_consen 164 LYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLE 243 (282)
T ss_dssp HHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHH
Confidence 78888889999988888765321 11222 23334445666778888888888876 33331 234555666
Q ss_pred HHHHcCChhH
Q 004369 566 GCRRHGNMEL 575 (758)
Q Consensus 566 ~~~~~g~~~~ 575 (758)
+|. .||.+.
T Consensus 244 A~~-~~D~e~ 252 (282)
T PF14938_consen 244 AYE-EGDVEA 252 (282)
T ss_dssp HHH-TT-CCC
T ss_pred HHH-hCCHHH
Confidence 654 344433
No 205
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.023 Score=57.43 Aligned_cols=83 Identities=12% Similarity=0.100 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhhCCCCCCCceeEEEECCEE
Q 004369 558 VIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREEKLSETDDWSWIRIKDKV 637 (758)
Q Consensus 558 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~ 637 (758)
.+++.|...|.+.+++..|++..++.++++|+|.-+...-+.+|...|.++.|+..|+++.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k------------------ 319 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK------------------ 319 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH------------------
Confidence 45777888889999999999999999999999999999999999999999999999999986
Q ss_pred EEEecCCCCCCChHHHHHHHHHHHHHHHH
Q 004369 638 YSFKPNDGLHPQSAEIFKVLDELVEKAKC 666 (758)
Q Consensus 638 ~~f~~~~~~~~~~~~i~~~l~~l~~~m~~ 666 (758)
..|..+.|...|..+.+++++
T Consensus 320 --------~~P~Nka~~~el~~l~~k~~~ 340 (397)
T KOG0543|consen 320 --------LEPSNKAARAELIKLKQKIRE 340 (397)
T ss_pred --------hCCCcHHHHHHHHHHHHHHHH
Confidence 456667777777777666654
No 206
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.62 E-value=0.99 Score=46.02 Aligned_cols=104 Identities=17% Similarity=0.230 Sum_probs=73.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHccCCCCCeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCHHHHHHH
Q 004369 315 NSIMYLYLKCGLVDEAQKLFDGMSHVNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSI 394 (758)
Q Consensus 315 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 394 (758)
+..+.-+...|+...|.++-.+..-||-.-|-..|.+++. .+++++-..+-.. +-.+.-|..+
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~-----------~~~w~eL~~fa~s------kKsPIGyepF 243 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAE-----------NKDWDELEKFAKS------KKSPIGYEPF 243 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHh-----------cCCHHHHHHHHhC------CCCCCChHHH
Confidence 3445556677888888888888877888888888888888 8888776654321 1234667777
Q ss_pred HHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHH
Q 004369 395 LTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRV 445 (758)
Q Consensus 395 l~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~ 445 (758)
+.+|.+.|+..+|..+...+ .+..-+.+|.++|++.+|.+.
T Consensus 244 v~~~~~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 244 VEACLKYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHHCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHH
Confidence 88888888877777666541 124567778888888887765
No 207
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.58 E-value=0.022 Score=46.58 Aligned_cols=80 Identities=16% Similarity=0.039 Sum_probs=64.3
Q ss_pred HHHHHHHHhhCCChhhHHHHHHHHHHCCC-CCChhhHHHHHHHHcccCC--------hHHHHHHHHHHHHhCCCCchhHH
Q 004369 244 WTTVIGACGENGEAVQGLRFFSKMLSEGI-QPNEFTLTSISSVCGTMLS--------LRVGAQVHSLGIKLGYASNLRVR 314 (758)
Q Consensus 244 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~~~~~~~~--------~~~a~~~~~~~~~~g~~~~~~~~ 314 (758)
-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++..- +-....++..++..++.|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34456666777999999999999999999 8999999999998876532 33456778888888999999999
Q ss_pred HHHHHHHHh
Q 004369 315 NSIMYLYLK 323 (758)
Q Consensus 315 ~~li~~~~~ 323 (758)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 998887765
No 208
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.57 E-value=0.047 Score=46.40 Aligned_cols=91 Identities=19% Similarity=0.231 Sum_probs=63.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCC-CHHHHHHHHHHHH
Q 004369 460 MITGFANHSLSHQALQLFEDMLLAGVRPN--QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKP-VMDHYMCLIDMFV 536 (758)
Q Consensus 460 li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~ 536 (758)
+..++-..|+.++|+.+|++....|+... ...+..+.+.+...|++++|..+++.....+.-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 44566778889999999999888886655 34666777788888899999888888876432211 1122223445677
Q ss_pred HcCCHHHHHHHHHH
Q 004369 537 RLGCIEEAFDFIKK 550 (758)
Q Consensus 537 ~~g~~~~A~~~~~~ 550 (758)
..|+.++|++.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 78888888876654
No 209
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.55 E-value=0.0041 Score=42.21 Aligned_cols=42 Identities=24% Similarity=0.370 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHH
Q 004369 558 VIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLD 599 (758)
Q Consensus 558 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 599 (758)
.+|..+..++...|++++|+++++++++..|+|+..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 367889999999999999999999999999999988887764
No 210
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.54 E-value=0.061 Score=54.12 Aligned_cols=152 Identities=13% Similarity=0.078 Sum_probs=84.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH----HcCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHhhh---hcCC-CCCHH
Q 004369 456 SWTSMITGFANHSLSHQALQLFEDML----LAGVRP-NQVTFVGALAACSNAGMVYEALGYFEMMQK---EYKI-KPVMD 526 (758)
Q Consensus 456 ~~~~li~~~~~~g~~~~A~~~~~~m~----~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~---~~~~-~p~~~ 526 (758)
.|..|...|.-.|+++.|+..-+.-+ +-|-+. ....+..+..++.-.|+++.|.+.|+.... +.|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 45555555555667777765543322 112111 123455666666667777777777665422 0111 12234
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHc--------CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhccC-----CC-Cch
Q 004369 527 HYMCLIDMFVRLGCIEEAFDFIKKM--------DFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLK-----PK-DCE 592 (758)
Q Consensus 527 ~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----p~-~~~ 592 (758)
..-+|.+.|.-...+++|+.++.+- ...-....+.+|..++...|..+.|+..+++.+++. |. ...
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelT 356 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELT 356 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhh
Confidence 4456677777777777777776553 111234566778888888888888887777766532 21 223
Q ss_pred hHHHHHHHhhhCCCc
Q 004369 593 SYAMLLDIFVSAGRW 607 (758)
Q Consensus 593 ~~~~l~~~~~~~g~~ 607 (758)
....|++.-...|.-
T Consensus 357 ar~Nlsdl~~~lG~~ 371 (639)
T KOG1130|consen 357 ARDNLSDLILELGQE 371 (639)
T ss_pred hhhhhHHHHHHhCCC
Confidence 444555555555543
No 211
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.39 E-value=0.25 Score=41.68 Aligned_cols=140 Identities=11% Similarity=0.070 Sum_probs=85.3
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 004369 465 ANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEA 544 (758)
Q Consensus 465 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 544 (758)
.-.|..++..++..+...+ .+..-++.++.-....-+-+-..+.++.+-+-+.+. .+|++...
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis--------------~C~NlKrV 75 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS--------------KCGNLKRV 75 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG--------------G-S-THHH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCch--------------hhcchHHH
Confidence 3457777888888777653 234445555544444555555666666665433332 23444444
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhhCCCC
Q 004369 545 FDFIKKMDFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREEKLS 623 (758)
Q Consensus 545 ~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 623 (758)
...+-.++. +..-.+.-+......|+-+.-.+++..+.+.+..+|.....++++|.+.|...++.+++++.-++|++
T Consensus 76 i~C~~~~n~--~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 76 IECYAKRNK--LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHhcc--hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 444444332 33445666778888999999999999998766677899999999999999999999999999998875
No 212
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.36 E-value=0.067 Score=52.81 Aligned_cols=100 Identities=14% Similarity=0.078 Sum_probs=64.6
Q ss_pred HHHHHHHHhccccHHHHHHHHHHhhhhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC----CHHHHHHHHH
Q 004369 492 FVGALAACSNAGMVYEALGYFEMMQKEYKIKPV-MDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP----NEVIWSVFIA 565 (758)
Q Consensus 492 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p----~~~~~~~ll~ 565 (758)
|...+.-..+.|++++|...|+.+.+.+.-.+- ...+--+...|...|++++|...|+++ ...| ....|..+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 444443334457777777777777664422211 234556777777778888887777776 2222 2344555666
Q ss_pred HHHHcCChhHHHHHHHHHhccCCCCc
Q 004369 566 GCRRHGNMELGFYAAEQLLKLKPKDC 591 (758)
Q Consensus 566 ~~~~~g~~~~a~~~~~~~~~~~p~~~ 591 (758)
.+...|+.+.|...++++++..|++.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 77788889999999998888888764
No 213
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.05 E-value=0.41 Score=45.56 Aligned_cols=137 Identities=13% Similarity=0.103 Sum_probs=86.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcC----CCCCHHHHHHHHH
Q 004369 458 TSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYK----IKPVMDHYMCLID 533 (758)
Q Consensus 458 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~----~~p~~~~~~~li~ 533 (758)
+.++..+.-+|.+.-.+.++++.++...+-+......+.+.-.+.|+.+.|..+|+...+..+ +.-...+...+..
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 455666666777888888888888866566677777788888888999999999887665322 2222222233334
Q ss_pred HHHHcCCHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhH
Q 004369 534 MFVRLGCIEEAFDFIKKMD-FEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESY 594 (758)
Q Consensus 534 ~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 594 (758)
.|.-+.++.+|...+.+.. ..| |+...|.=.-...-.|+...|.+..+.+++..|....+-
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~e 323 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHE 323 (366)
T ss_pred heecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhh
Confidence 4555667777777777762 223 333333333333345777778888888888777644433
No 214
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.04 E-value=0.33 Score=46.10 Aligned_cols=126 Identities=12% Similarity=0.052 Sum_probs=88.1
Q ss_pred CCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCh-----HHHHhHHhhhHHhcCCHH
Q 004369 366 HNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSD-----VVVGTALVNMYKKCGRIE 440 (758)
Q Consensus 366 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~-----~~~~~~Li~~y~~~g~~~ 440 (758)
.+.+.-.+.++.+.++...+.++.....+.+.-.+.|+.+.+...++...+..-..| ..+.......|.-..++.
T Consensus 190 ~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a 269 (366)
T KOG2796|consen 190 MKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFA 269 (366)
T ss_pred chhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchH
Confidence 677777888888888876666788888888888889999999888887776433333 333333344456677888
Q ss_pred HHHHHHHhcCCC---ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 004369 441 RASRVFVEMSTR---TLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFV 493 (758)
Q Consensus 441 ~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 493 (758)
.|...|.++... |++.-|.-.-...-.|+..+|++..+.|... .|...+-+
T Consensus 270 ~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 270 EAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred HHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhh
Confidence 888888877643 4555555444555568888888888888874 45544444
No 215
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.01 E-value=0.011 Score=46.10 Aligned_cols=24 Identities=33% Similarity=0.596 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Q 004369 527 HYMCLIDMFVRLGCIEEAFDFIKK 550 (758)
Q Consensus 527 ~~~~li~~~~~~g~~~~A~~~~~~ 550 (758)
.|+.+...|.+.|++++|++.+++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~ 30 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEK 30 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344444444444444444444444
No 216
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.95 E-value=0.094 Score=45.07 Aligned_cols=51 Identities=12% Similarity=0.182 Sum_probs=35.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc----CCCCCHHHHHHHHHHHHHc
Q 004369 520 KIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM----DFEPNEVIWSVFIAGCRRH 570 (758)
Q Consensus 520 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~ll~~~~~~ 570 (758)
...|+.....+++.+|+..|++..|+++++.. +++-+..+|..|+.=+...
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 45577777777777777777777777777665 5444567777777655443
No 217
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.89 E-value=1.8 Score=41.64 Aligned_cols=195 Identities=19% Similarity=0.190 Sum_probs=141.3
Q ss_pred HHHHhHHhhhHHhcCCHHHHHHHHHhcC-----CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004369 423 VVVGTALVNMYKKCGRIERASRVFVEMS-----TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALA 497 (758)
Q Consensus 423 ~~~~~~Li~~y~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 497 (758)
..........+...+.+..+...+.... ......+..+...+...+++.++.+.+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 4666677777888888888888877754 23445666777777788888899999988887543332 22222222
Q ss_pred -HHhccccHHHHHHHHHHhhhhcCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCC--HHHHHHHHHHHHHcC
Q 004369 498 -ACSNAGMVYEALGYFEMMQKEYKI--KPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEPN--EVIWSVFIAGCRRHG 571 (758)
Q Consensus 498 -a~~~~g~~~~a~~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~--~~~~~~ll~~~~~~g 571 (758)
.+...|+++.+...+..... ..- ......+......+...++.++|...+.+. ...|+ ...+..+...+...+
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 138 GALYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence 67888999999999988843 111 123444455555577888999999998887 44444 567888888888888
Q ss_pred ChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369 572 NMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTRE 619 (758)
Q Consensus 572 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 619 (758)
+.+.|...+...+...|.....+..+...+...|.++++...+.....
T Consensus 217 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 217 KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999888666777777777777778888888777765
No 218
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.87 E-value=0.083 Score=47.24 Aligned_cols=106 Identities=21% Similarity=0.265 Sum_probs=70.4
Q ss_pred hccccHHHHHHHHHHhhhhcCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHH
Q 004369 500 SNAGMVYEALGYFEMMQKEYKIK--PVMDHYMCLIDMFVRLGCIEEAFDFIKKMDFEPNEVIWSVFIAGCRRHGNMELGF 577 (758)
Q Consensus 500 ~~~g~~~~a~~~~~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~ 577 (758)
...|+.+.+...+..+...+.-+ |+... ...+......++++ -..+...++..+...|+++.|.
T Consensus 17 ~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~----~~~~~~~l~~~~~~~~~~~~a~ 82 (146)
T PF03704_consen 17 ARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLREL----YLDALERLAEALLEAGDYEEAL 82 (146)
T ss_dssp HHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHH----HHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHH----HHHHHHHHHHHHHhccCHHHHH
Confidence 44567777777777766543211 11110 11222222333332 1234566777888999999999
Q ss_pred HHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369 578 YAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTRE 619 (758)
Q Consensus 578 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 619 (758)
..+++++..+|-+...|..+..+|...|+..+|.++++.++.
T Consensus 83 ~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 83 RLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988864
No 219
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.86 E-value=0.29 Score=47.93 Aligned_cols=102 Identities=16% Similarity=0.099 Sum_probs=72.0
Q ss_pred CHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHc-CCCC-CHHHHHH
Q 004369 488 NQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLG---CIEEAFDFIKKM-DFEP-NEVIWSV 562 (758)
Q Consensus 488 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m-~~~p-~~~~~~~ 562 (758)
|...|..|..+|...|+.+.|...|....+-.| ++.+.+..+..++.... ...++.++|+++ ..+| |..+...
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g--~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAG--DNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 466777777888888888888888877765323 33455555665554333 345678888887 6666 5556666
Q ss_pred HHHHHHHcCChhHHHHHHHHHhccCCCCc
Q 004369 563 FIAGCRRHGNMELGFYAAEQLLKLKPKDC 591 (758)
Q Consensus 563 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 591 (758)
|..++...|++.+|...++.+++..|.+.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 77788888888888888888888887653
No 220
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.73 E-value=0.062 Score=44.98 Aligned_cols=90 Identities=11% Similarity=0.146 Sum_probs=73.5
Q ss_pred HHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCC----chhHHHHHHHhhhCCC
Q 004369 533 DMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKD----CESYAMLLDIFVSAGR 606 (758)
Q Consensus 533 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~ 606 (758)
-++...|+++.|++.|.+. .+-| +...||.-..+++-.|+.++|+.-+++++++.-+. ...|+.-+.+|-..|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3567889999999999887 5555 67789999999999999999999999999875332 2367788889999999
Q ss_pred chhHHHHHHHhhhCCC
Q 004369 607 WEDVAVVKNLTREEKL 622 (758)
Q Consensus 607 ~~~a~~~~~~m~~~~~ 622 (758)
-+.|+.-|+...+.|-
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 9999998888877553
No 221
>PRK11906 transcriptional regulator; Provisional
Probab=95.70 E-value=0.18 Score=52.68 Aligned_cols=134 Identities=8% Similarity=0.053 Sum_probs=68.6
Q ss_pred hHH--HHHHHHHHhc-----CCHHHHHHHHHHHHH-cCCCCCHH-HHHHHHHHHhc---------cccHHHHHHHHHHhh
Q 004369 455 ISW--TSMITGFANH-----SLSHQALQLFEDMLL-AGVRPNQV-TFVGALAACSN---------AGMVYEALGYFEMMQ 516 (758)
Q Consensus 455 ~~~--~~li~~~~~~-----g~~~~A~~~~~~m~~-~g~~p~~~-t~~~ll~a~~~---------~g~~~~a~~~~~~~~ 516 (758)
..| ..++.|.... -..+.|+.+|.+... +.+.|+.. .|..+..++.. .....+|.+.-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 455 5555554441 135677778888772 23666633 34433332211 112334444444443
Q ss_pred hhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCC
Q 004369 517 KEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEPN-EVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKD 590 (758)
Q Consensus 517 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 590 (758)
+ --.-|......+..++.-.|+++.|...|++. ...|| ..+|......+.-.|+.++|.+.+++.++++|..
T Consensus 332 e--ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~ 405 (458)
T PRK11906 332 D--ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRR 405 (458)
T ss_pred h--cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchh
Confidence 3 11223444444555555555566666666665 45553 3445555555555666666666666666666653
No 222
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.67 E-value=3.9 Score=44.07 Aligned_cols=183 Identities=12% Similarity=0.060 Sum_probs=125.7
Q ss_pred ChHHHHhHHhhhHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHH
Q 004369 421 SDVVVGTALVNMYKKCGRIERASRVFVEMSTR---TLISWTSMITGFANHSLSHQALQLFEDMLLAGV--RPNQVTFVGA 495 (758)
Q Consensus 421 ~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~l 495 (758)
++..+|..-++.-.+.|+.+.+.-+|++..-+ =...|--.+.-....|+.+-|..++....+--+ .|....+.+.
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 35677888888888999999999999987644 223455555444455888888877776655322 2333333333
Q ss_pred HHHHhccccHHHHHHHHHHhhhhcCCCCC-HHHHHHHHHHHHHcCCHHHHH---HHHHHc-CCCCCHHHHHHHHHH----
Q 004369 496 LAACSNAGMVYEALGYFEMMQKEYKIKPV-MDHYMCLIDMFVRLGCIEEAF---DFIKKM-DFEPNEVIWSVFIAG---- 566 (758)
Q Consensus 496 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~---~~~~~m-~~~p~~~~~~~ll~~---- 566 (758)
+ +...|+++.|..+++.+.++ . |+ +..-.--+....+.|..+.+. +++... +.+-+..+...+.--
T Consensus 375 f--~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~ 449 (577)
T KOG1258|consen 375 F--EESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARL 449 (577)
T ss_pred H--HHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHH
Confidence 3 56688999999999999885 3 55 333444567778999999888 555544 222233333333322
Q ss_pred -HHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCch
Q 004369 567 -CRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWE 608 (758)
Q Consensus 567 -~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 608 (758)
+...++.+.|..++.++.+..|++...|..+.+.....+...
T Consensus 450 ~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~ 492 (577)
T KOG1258|consen 450 RYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPSGR 492 (577)
T ss_pred HHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCcch
Confidence 334578999999999999999999999999999887776433
No 223
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.64 E-value=0.016 Score=45.34 Aligned_cols=63 Identities=11% Similarity=0.140 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHhcc----CCC---CchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369 557 EVIWSVFIAGCRRHGNMELGFYAAEQLLKL----KPK---DCESYAMLLDIFVSAGRWEDVAVVKNLTRE 619 (758)
Q Consensus 557 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 619 (758)
..+++.+...+...|++++|+..+++++++ +++ -..++..++.+|...|++++|.+++++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 356889999999999999999999999865 222 245788999999999999999999988654
No 224
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=95.54 E-value=0.82 Score=44.77 Aligned_cols=52 Identities=21% Similarity=0.127 Sum_probs=29.9
Q ss_pred HhhcCCChHHHHHHHccCCC--CCcc-h---HHHHHHHHHhCCCchHHHHHHHHHHHc
Q 004369 118 VYGKCGNMEEAQKVFDNLPR--INVV-S---WTSLISGYVQNSQPELAIHVFLDMLEA 169 (758)
Q Consensus 118 ~~~~~g~~~~A~~~f~~~~~--~~~~-~---~~~li~~~~~~g~~~~A~~~~~~m~~~ 169 (758)
.+.+.|++++|.+.|+.+.. |+.. . .-.+..++.+.+++++|+..|++..+.
T Consensus 41 ~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 41 QKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 33456777777777766653 2211 1 122344566777777777777777664
No 225
>PRK11906 transcriptional regulator; Provisional
Probab=95.44 E-value=2.2 Score=44.88 Aligned_cols=118 Identities=13% Similarity=0.178 Sum_probs=85.1
Q ss_pred cHHHHHHHHHHhhhhcCCCCC-HHHHHHHHHHHHH---------cCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcC
Q 004369 504 MVYEALGYFEMMQKEYKIKPV-MDHYMCLIDMFVR---------LGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHG 571 (758)
Q Consensus 504 ~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~---------~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g 571 (758)
..+.|..+|.+......++|+ ...|..+...+.. .....+|.++.++. .+.| |......+..+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 456778888888744456666 4455544443321 22455667777666 5666 6777777777777778
Q ss_pred ChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhhCC
Q 004369 572 NMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREEK 621 (758)
Q Consensus 572 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 621 (758)
+++.|...++++..++|+.+.++...++...-.|+.++|.+.++...+..
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs 402 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLE 402 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 88999999999999999988899999998888999999988888855543
No 226
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.41 E-value=4 Score=42.41 Aligned_cols=73 Identities=18% Similarity=0.260 Sum_probs=57.6
Q ss_pred HHHHHHcCCCC----CHHHHHHHHHH--HHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhh
Q 004369 545 FDFIKKMDFEP----NEVIWSVFIAG--CRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTR 618 (758)
Q Consensus 545 ~~~~~~m~~~p----~~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 618 (758)
+.++++.|+.| +...-|.|..| ...+|++.++.-...=+.+..| ++.+|..++-.+....+++||-.++..+.
T Consensus 444 e~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 444 EDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 44555556665 34456667666 4678999999988888889999 78999999999999999999999988764
No 227
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.41 E-value=5.6 Score=44.03 Aligned_cols=113 Identities=13% Similarity=0.135 Sum_probs=84.9
Q ss_pred CHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004369 488 NQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKMDFEPNEVIWSVFIAGC 567 (758)
Q Consensus 488 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~ 567 (758)
...|.+--+.-+...|...+|.++-.+. .+ ||...|---+.+++..+++++-+++-+++. .+.-|.-+..+|
T Consensus 683 ~dlSl~dTv~~li~~g~~k~a~ql~~~F----ki-pdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe~c 754 (829)
T KOG2280|consen 683 VDLSLHDTVTTLILIGQNKRAEQLKSDF----KI-PDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVEAC 754 (829)
T ss_pred ccCcHHHHHHHHHHccchHHHHHHHHhc----CC-cchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHHHH
Confidence 3444555556677888888888776554 33 888888888999999999999888887763 134466778899
Q ss_pred HHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHH
Q 004369 568 RRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNL 616 (758)
Q Consensus 568 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 616 (758)
.+.|+.++|.+++-+.-. +.-...+|.+.|++.+|.+.--+
T Consensus 755 ~~~~n~~EA~KYiprv~~--------l~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 755 LKQGNKDEAKKYIPRVGG--------LQEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HhcccHHHHhhhhhccCC--------hHHHHHHHHHhccHHHHHHHHHH
Confidence 999999999988766522 22678899999999999876443
No 228
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.38 E-value=1.5 Score=41.76 Aligned_cols=163 Identities=13% Similarity=0.120 Sum_probs=82.6
Q ss_pred hhHHhcCCHHHHHHHHHhcCCC------ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhcc
Q 004369 431 NMYKKCGRIERASRVFVEMSTR------TLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPN--QVTFVGALAACSNA 502 (758)
Q Consensus 431 ~~y~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~ 502 (758)
..+...|++++|.+.|+.+... -....-.++.++.+.|++++|...+++.++. -|+ ..-+...+.+.+..
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHHHHHHHH
Confidence 3445566777777777666521 1123445566666667777777777766653 222 22222222222221
Q ss_pred ccH-------------HHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 004369 503 GMV-------------YEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKMDFEPNEVIWSVFIAGCRR 569 (758)
Q Consensus 503 g~~-------------~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~ 569 (758)
... .+|... +..++.-|=......+|...+..+...--. ---.+..-|.+
T Consensus 91 ~~~~~~~~~~~D~~~~~~A~~~----------------~~~li~~yP~S~y~~~A~~~l~~l~~~la~-~e~~ia~~Y~~ 153 (203)
T PF13525_consen 91 KQIPGILRSDRDQTSTRKAIEE----------------FEELIKRYPNSEYAEEAKKRLAELRNRLAE-HELYIARFYYK 153 (203)
T ss_dssp HHHHHHH-TT---HHHHHHHHH----------------HHHHHHH-TTSTTHHHHHHHHHHHHHHHHH-HHHHHHHHHHC
T ss_pred HhCccchhcccChHHHHHHHHH----------------HHHHHHHCcCchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 111 112222 223333333333344444333332100000 01124556778
Q ss_pred cCChhHHHHHHHHHhccCCCCch---hHHHHHHHhhhCCCchhHHH
Q 004369 570 HGNMELGFYAAEQLLKLKPKDCE---SYAMLLDIFVSAGRWEDVAV 612 (758)
Q Consensus 570 ~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~ 612 (758)
.|.+..|..-++.+++.-|+.+. ....|+.+|.+.|..+.+..
T Consensus 154 ~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 154 RGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp TT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred cccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 89999999999999999888543 55678888999998875443
No 229
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.37 E-value=1.2 Score=42.37 Aligned_cols=140 Identities=16% Similarity=0.126 Sum_probs=71.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHH
Q 004369 460 MITGFANHSLSHQALQLFEDMLLAGVRPN--QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVR 537 (758)
Q Consensus 460 li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 537 (758)
....+...|++.+|+..|+++...-.... ......+..++.+.|++++|...++...+.+.-.|... +.....+.+.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~-~A~Y~~g~~~ 89 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKAD-YALYMLGLSY 89 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHH-HHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh-hHHHHHHHHH
Confidence 34455667777777777777776421111 23445556667777777777777777766555444421 1111111110
Q ss_pred cCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCch-----------------hHHHHHHH
Q 004369 538 LGCIEEAFDFIKKMDFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCE-----------------SYAMLLDI 600 (758)
Q Consensus 538 ~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----------------~~~~l~~~ 600 (758)
........ ......+....|...++.+++.-|+++- .-..++..
T Consensus 90 ~~~~~~~~-------------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~ 150 (203)
T PF13525_consen 90 YKQIPGIL-------------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARF 150 (203)
T ss_dssp HHHHHHHH--------------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCccch-------------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000000 0011122334455555555555555322 33457888
Q ss_pred hhhCCCchhHHHHHHHhhh
Q 004369 601 FVSAGRWEDVAVVKNLTRE 619 (758)
Q Consensus 601 ~~~~g~~~~a~~~~~~m~~ 619 (758)
|.+.|+|..|..-++.+.+
T Consensus 151 Y~~~~~y~aA~~r~~~v~~ 169 (203)
T PF13525_consen 151 YYKRGKYKAAIIRFQYVIE 169 (203)
T ss_dssp HHCTT-HHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHH
Confidence 9999999999999999876
No 230
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.32 E-value=4 Score=41.86 Aligned_cols=157 Identities=12% Similarity=0.023 Sum_probs=102.5
Q ss_pred HHHHHHHH-HHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhh--HHhcCCHHHHHHHHHhcCCCChh----------
Q 004369 389 YTFSSILT-ICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNM--YKKCGRIERASRVFVEMSTRTLI---------- 455 (758)
Q Consensus 389 ~t~~~ll~-a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~--y~~~g~~~~A~~~~~~~~~~~~~---------- 455 (758)
.++..+-. .+...++.+.+.++-..+.+.. ....+..++.. +--.++.+.|...|++...-|+.
T Consensus 169 ~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~ 245 (486)
T KOG0550|consen 169 FKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMM 245 (486)
T ss_pred hHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhh
Confidence 44433322 3466788888888877776643 11222222222 33467889999999887744332
Q ss_pred -----HHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCC-HH
Q 004369 456 -----SWTSMITGFANHSLSHQALQLFEDMLLA---GVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPV-MD 526 (758)
Q Consensus 456 -----~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~ 526 (758)
.|..-..-..+.|++.+|.+.|.+.+.. .++|+...|.....+..+.|+.++|+.-.+...+ +.|. ..
T Consensus 246 ~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~---iD~syik 322 (486)
T KOG0550|consen 246 PKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK---IDSSYIK 322 (486)
T ss_pred HHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh---cCHHHHH
Confidence 2333344567889999999999998863 3455666777777788899999999998887753 4443 22
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHc
Q 004369 527 HYMCLIDMFVRLGCIEEAFDFIKKM 551 (758)
Q Consensus 527 ~~~~li~~~~~~g~~~~A~~~~~~m 551 (758)
.|-.-..++.-.+++++|.+-+++.
T Consensus 323 all~ra~c~l~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 323 ALLRRANCHLALEKWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344555667888998888876
No 231
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.29 E-value=0.22 Score=42.74 Aligned_cols=98 Identities=9% Similarity=0.160 Sum_probs=66.6
Q ss_pred HHHHhHHhhhHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 004369 423 VVVGTALVNMYKKCGRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNA 502 (758)
Q Consensus 423 ~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 502 (758)
..++.+++-++++.|+++....+.+..=.-|+ .+-...+. --......|+..+..+++.+++..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~-------~~~~~~~~---------~~~~spl~Pt~~lL~AIv~sf~~n 65 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDV-------NGKKKEGD---------YPPSSPLYPTSRLLIAIVHSFGYN 65 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCC-------CCccccCc---------cCCCCCCCCCHHHHHHHHHHHHhc
Confidence 34556666666666666666666654321111 00000110 011234779999999999999999
Q ss_pred ccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH
Q 004369 503 GMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFV 536 (758)
Q Consensus 503 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 536 (758)
|++..|.++.+...+.|+++-+...|..|+.-..
T Consensus 66 ~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 66 GDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred ccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999888888988876443
No 232
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.22 E-value=0.12 Score=53.89 Aligned_cols=64 Identities=9% Similarity=0.032 Sum_probs=50.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCCH----HHHHHHHHHHHHcCChhHHHHHHHHHhccC
Q 004369 524 VMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEPNE----VIWSVFIAGCRRHGNMELGFYAAEQLLKLK 587 (758)
Q Consensus 524 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 587 (758)
+...++.+..+|.+.|++++|+..|++. .+.|+. .+|..+..+|...|+.++|+..+++++++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 3567778888888888888888888876 667753 358888888888888888888888888863
No 233
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.17 E-value=3.1 Score=39.80 Aligned_cols=218 Identities=18% Similarity=0.129 Sum_probs=157.5
Q ss_pred ChhHHHHHHHHhHhCCCC-CCHHHHHHHHHHHhcccchHHHHHHHHHHHHc-CCCChHHHHhHHhhhHHhcCCHHHHHHH
Q 004369 368 GGTEALSIFSKLNSSGMK-PDLYTFSSILTICSRLVALEQGEQIHALTLKT-GFLSDVVVGTALVNMYKKCGRIERASRV 445 (758)
Q Consensus 368 ~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-~~~~~~~~~~~Li~~y~~~g~~~~A~~~ 445 (758)
....+...+......... .....+......+...+.+..+...+...... ........+..+...+...++...+.+.
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
T COG0457 38 ELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALEL 117 (291)
T ss_pred hHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHH
Confidence 334455555555443222 13566667777778888888888877776653 3455666777788888888999999999
Q ss_pred HHhcCCC--C-hhHHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHhccccHHHHHHHHHHhhh
Q 004369 446 FVEMSTR--T-LISWTSMIT-GFANHSLSHQALQLFEDMLLAGVRP----NQVTFVGALAACSNAGMVYEALGYFEMMQK 517 (758)
Q Consensus 446 ~~~~~~~--~-~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 517 (758)
+...... + ...+..... .+...|+.+.|...+++... ..| ....+......+...++.+++...+....+
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 118 LEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 9887642 2 233333444 78899999999999999965 343 234444455556778999999999999876
Q ss_pred hcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHhccCCC
Q 004369 518 EYKIKP-VMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEPN-EVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPK 589 (758)
Q Consensus 518 ~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 589 (758)
. ... ....+..+...+...+.+++|...+... ...|+ ...+..+...+...++.+.+...+.+..+..|.
T Consensus 196 ~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 196 L--NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred h--CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 2 333 4677888899999999999999999988 55554 555666666666777899999999999999887
No 234
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.08 E-value=3 Score=39.58 Aligned_cols=199 Identities=15% Similarity=0.102 Sum_probs=108.0
Q ss_pred HHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCCCCh--hHHHHHHHHHHhcC
Q 004369 391 FSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMSTRTL--ISWTSMITGFANHS 468 (758)
Q Consensus 391 ~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~--~~~~~li~~~~~~g 468 (758)
|...-.++....+++.+...+....+. .+.+...|. ....++.|.-+.+++.+-+. ..|+--...|..+|
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G 105 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG 105 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC
Confidence 444445666677777777765555431 111111111 12234444444555443322 34555667788888
Q ss_pred CHHHHHHHHHHHHH--cCCCCCHH--HHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 004369 469 LSHQALQLFEDMLL--AGVRPNQV--TFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEA 544 (758)
Q Consensus 469 ~~~~A~~~~~~m~~--~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 544 (758)
.++-|-..+++.-+ .++.|+.. .|.--+......++...| .+.|......|.+..+++||
T Consensus 106 spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma----------------~el~gk~sr~lVrl~kf~Ea 169 (308)
T KOG1585|consen 106 SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMA----------------FELYGKCSRVLVRLEKFTEA 169 (308)
T ss_pred CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHH----------------HHHHHHhhhHhhhhHHhhHH
Confidence 87777666665443 22444421 222222222222222222 23455556677788888887
Q ss_pred HHHHHHcC-------CCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHhcc----CCCCchhHHHHHHHhhhCCCchhHHH
Q 004369 545 FDFIKKMD-------FEPNE-VIWSVFIAGCRRHGNMELGFYAAEQLLKL----KPKDCESYAMLLDIFVSAGRWEDVAV 612 (758)
Q Consensus 545 ~~~~~~m~-------~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~~~~~~~~l~~~~~~~g~~~~a~~ 612 (758)
-..|.+-+ --|+. ..+-+.+-.+....|+..|++.++.--+. +|++..+...|..+| ..|+.+++.+
T Consensus 170 a~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~k 248 (308)
T KOG1585|consen 170 ATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKK 248 (308)
T ss_pred HHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHH
Confidence 77665541 11222 22444555556667888899888886553 466777777887777 4677777766
Q ss_pred HH
Q 004369 613 VK 614 (758)
Q Consensus 613 ~~ 614 (758)
+.
T Consensus 249 vl 250 (308)
T KOG1585|consen 249 VL 250 (308)
T ss_pred HH
Confidence 54
No 235
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.02 E-value=0.47 Score=41.26 Aligned_cols=58 Identities=19% Similarity=0.280 Sum_probs=39.5
Q ss_pred HHHcCCHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCch
Q 004369 535 FVRLGCIEEAFDFIKKM----DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCE 592 (758)
Q Consensus 535 ~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 592 (758)
..+.|++++|.+.|+.+ +..| ..-.-..|+.++.+.+++++|...+++.+++.|.++.
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 34667777777777766 3333 2334556777788888888888888888888776543
No 236
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.92 E-value=0.31 Score=49.68 Aligned_cols=138 Identities=14% Similarity=0.064 Sum_probs=95.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCC
Q 004369 461 ITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGC 540 (758)
Q Consensus 461 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 540 (758)
.+.|.+.|++..|...|++.... |. +...-+.++...... .-...+..|.-.|.+.+.
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~------------l~-~~~~~~~ee~~~~~~---------~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF------------LE-YRRSFDEEEQKKAEA---------LKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH------------hh-ccccCCHHHHHHHHH---------HHHHHhhHHHHHHHhhhh
Confidence 45677777787777777776542 00 111111222221111 112456677788899999
Q ss_pred HHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhH-HHHHHHh
Q 004369 541 IEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDV-AVVKNLT 617 (758)
Q Consensus 541 ~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a-~~~~~~m 617 (758)
+.+|++.-++. ..+| |....--=..+|...|+++.|+..++++++++|+|-.+...|+.+-.+..+..+. .+++..|
T Consensus 273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888877 5555 6666666678899999999999999999999999999888888887777666554 6677777
Q ss_pred hhC
Q 004369 618 REE 620 (758)
Q Consensus 618 ~~~ 620 (758)
-.+
T Consensus 353 F~k 355 (397)
T KOG0543|consen 353 FAK 355 (397)
T ss_pred hhc
Confidence 543
No 237
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.84 E-value=8.6 Score=43.20 Aligned_cols=166 Identities=10% Similarity=0.079 Sum_probs=96.4
Q ss_pred CCchhHHHHHHHHHHHcCCCCCcchHHHHHHH----hhcCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChHH
Q 004369 52 EPVRSLGFQEALSVLTEGPKVQTSSYVSLLQE----CVNRKSLSNAEIIHAHIVKTGSHQDFFVMTFLVNVYGKCGNMEE 127 (758)
Q Consensus 52 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~----~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 127 (758)
...+..|+.+...- +. +..+...+... |-+.|+++.|..-+-+-+.. +.|. .+|.-|....++..
T Consensus 347 K~ly~~Ai~LAk~~---~~--d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq~Ikn 415 (933)
T KOG2114|consen 347 KNLYKVAINLAKSQ---HL--DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQRIKN 415 (933)
T ss_pred hhhHHHHHHHHHhc---CC--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHHHHHH
Confidence 56777787766542 22 33344444444 44678888887666544321 1222 23444444445555
Q ss_pred HHHHHccCCC---CCcchHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHh
Q 004369 128 AQKVFDNLPR---INVVSWTSLISGYVQNSQPELAIHVFLDMLEAGNYPTNVTLGTALTACSSLESIRLGKQIHAYVVKY 204 (758)
Q Consensus 128 A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 204 (758)
-...++.+.+ .+...-..|+.+|.+.++.++-.++.+.-. .|.. .+-+-..+..|.+.+-+++|..+-....+
T Consensus 416 Lt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~- 491 (933)
T KOG2114|consen 416 LTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK- 491 (933)
T ss_pred HHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-
Confidence 5555555543 234445678888888888888777766544 3321 22345667777777777777665443322
Q ss_pred CCCCChhHHHHHHHHHhhcCChHHHHHHHhccCCC
Q 004369 205 QTEDDTSVGNSLCSLYSTCGSLNSAIKAFNRIREK 239 (758)
Q Consensus 205 g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~ 239 (758)
...+...++ -..|++++|.+.+..++-+
T Consensus 492 ----he~vl~ill---e~~~ny~eAl~yi~slp~~ 519 (933)
T KOG2114|consen 492 ----HEWVLDILL---EDLHNYEEALRYISSLPIS 519 (933)
T ss_pred ----CHHHHHHHH---HHhcCHHHHHHHHhcCCHH
Confidence 334444443 3568899999999998753
No 238
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.79 E-value=0.26 Score=47.28 Aligned_cols=99 Identities=16% Similarity=0.159 Sum_probs=79.8
Q ss_pred HHHHHHhcC--CCChhHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccc----------
Q 004369 442 ASRVFVEMS--TRTLISWTSMITGFANH-----SLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGM---------- 504 (758)
Q Consensus 442 A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~---------- 504 (758)
.++.|.... ++|-.+|-+++..|..+ +..+-....++.|.+-|+.-|..+|..||+.+-+..-
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 355666666 67888888888888754 5577777788999999999999999999998765332
Q ss_pred ------HHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCH
Q 004369 505 ------VYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCI 541 (758)
Q Consensus 505 ------~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 541 (758)
-+=++.++++|.. +|+.||.++-..|++++++.|..
T Consensus 133 ~HYP~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hhCchhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhcccccc
Confidence 2347889999976 79999999999999999999864
No 239
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.27 E-value=0.98 Score=45.13 Aligned_cols=117 Identities=20% Similarity=0.177 Sum_probs=52.1
Q ss_pred HHHHHhccccHHHHHHHHHHhhhhcCC--CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHc-------CCCC-----CHH
Q 004369 495 ALAACSNAGMVYEALGYFEMMQKEYKI--KP--VMDHYMCLIDMFVRLGCIEEAFDFIKKM-------DFEP-----NEV 558 (758)
Q Consensus 495 ll~a~~~~g~~~~a~~~~~~~~~~~~~--~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p-----~~~ 558 (758)
+-.|..-.+.++++++.|+.+.+--.- +| ...+|..|...|++..++++|.-+..+. +++- ...
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 333444444555555555554431110 11 1234555566666666665555444433 1110 011
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhccC--CCC----chhHHHHHHHhhhCCCchhHH
Q 004369 559 IWSVFIAGCRRHGNMELGFYAAEQLLKLK--PKD----CESYAMLLDIFVSAGRWEDVA 611 (758)
Q Consensus 559 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~----~~~~~~l~~~~~~~g~~~~a~ 611 (758)
+.-.+.-+++..|.+..|.+..+++.++. ..| ......++++|-..|+.+.|.
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af 266 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAF 266 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHH
Confidence 12223345555566555555555554431 122 223334556666655555443
No 240
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.17 E-value=0.32 Score=47.03 Aligned_cols=57 Identities=14% Similarity=0.088 Sum_probs=26.6
Q ss_pred HHHHHHHcCChhHHHHHHHHHhccCCC---CchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369 563 FIAGCRRHGNMELGFYAAEQLLKLKPK---DCESYAMLLDIFVSAGRWEDVAVVKNLTRE 619 (758)
Q Consensus 563 ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 619 (758)
|..++...|+++.|...|..+.+-.|+ -|..+.-|+.+..+.|+.++|..+++...+
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 344444445555555444444443332 233444444455555555555555444443
No 241
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.14 E-value=10 Score=44.35 Aligned_cols=94 Identities=20% Similarity=0.222 Sum_probs=52.5
Q ss_pred HHHHHhcCCHHHHHHHHccCCCCCeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCHHH--HHHHH
Q 004369 318 MYLYLKCGLVDEAQKLFDGMSHVNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYT--FSSIL 395 (758)
Q Consensus 318 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t--~~~ll 395 (758)
.-+|.++|+.++|.+.+.. .|++.+|+.+-.+|... -|... -..|.
T Consensus 959 al~Ye~~GklekAl~a~~~-----------------------------~~dWr~~l~~a~ql~~~---~de~~~~a~~L~ 1006 (1265)
T KOG1920|consen 959 ALMYERCGKLEKALKAYKE-----------------------------CGDWREALSLAAQLSEG---KDELVILAEELV 1006 (1265)
T ss_pred HHHHHHhccHHHHHHHHHH-----------------------------hccHHHHHHHHHhhcCC---HHHHHHHHHHHH
Confidence 4467777888877665543 78888888887776432 12221 13444
Q ss_pred HHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCC
Q 004369 396 TICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMST 451 (758)
Q Consensus 396 ~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~ 451 (758)
.-+...++.-+|-++..+.... ..-.+..|++...+++|.++-..-..
T Consensus 1007 s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~~~~ 1054 (1265)
T KOG1920|consen 1007 SRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASKAKR 1054 (1265)
T ss_pred HHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHhccc
Confidence 5555555555555554433221 12234456666677777766554443
No 242
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.06 E-value=0.55 Score=41.86 Aligned_cols=70 Identities=19% Similarity=0.235 Sum_probs=37.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhh----hcCCCCCHHH
Q 004369 457 WTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQK----EYKIKPVMDH 527 (758)
Q Consensus 457 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~ 527 (758)
...++..+...|++++|+.+.+++.... +-|...+..++.++...|+..+|.++|+.+.+ +.|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3445555566666666666666666632 23455666666666666766666666665532 3466666543
No 243
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.97 E-value=0.12 Score=32.40 Aligned_cols=33 Identities=24% Similarity=0.336 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHhccCCCC
Q 004369 558 VIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKD 590 (758)
Q Consensus 558 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 590 (758)
..|..+...+...|++++|++.++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 356777888888888888888888888888864
No 244
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.96 E-value=0.087 Score=33.12 Aligned_cols=32 Identities=16% Similarity=0.163 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHhccCCC
Q 004369 558 VIWSVFIAGCRRHGNMELGFYAAEQLLKLKPK 589 (758)
Q Consensus 558 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 589 (758)
.+|..+...+...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46778888888888888898888888888886
No 245
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.85 E-value=2.6 Score=45.87 Aligned_cols=115 Identities=17% Similarity=0.098 Sum_probs=75.2
Q ss_pred cccHHHHHHHHHHhhhhcCCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHc-C----CC-CCHHHHHHHHHHHHHcCChh
Q 004369 502 AGMVYEALGYFEMMQKEYKIKPVMDHYMC-LIDMFVRLGCIEEAFDFIKKM-D----FE-PNEVIWSVFIAGCRRHGNME 574 (758)
Q Consensus 502 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~-li~~~~~~g~~~~A~~~~~~m-~----~~-p~~~~~~~ll~~~~~~g~~~ 574 (758)
....+.+.++++.+.+.| |+...|.- -...+...|++++|++.|++. . .+ .....+--+.+.+....+++
T Consensus 246 ~~~~~~a~~lL~~~~~~y---P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRY---PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred CCCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence 446677777777776543 55444332 345566777888888888765 1 11 12334555667777788999
Q ss_pred HHHHHHHHHhccCCCCchhHH-HHHHHhhhCCCc-------hhHHHHHHHhhh
Q 004369 575 LGFYAAEQLLKLKPKDCESYA-MLLDIFVSAGRW-------EDVAVVKNLTRE 619 (758)
Q Consensus 575 ~a~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~-------~~a~~~~~~m~~ 619 (758)
+|...+.++.+.+.-....|. ..+-+|...|+. ++|.+++++...
T Consensus 323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 999999999887665444444 445666778888 777777777655
No 246
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=93.78 E-value=6.8 Score=37.79 Aligned_cols=165 Identities=16% Similarity=0.181 Sum_probs=92.2
Q ss_pred hcCCHHHHHHHHHhcCCCCh------hHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhc---c--
Q 004369 435 KCGRIERASRVFVEMSTRTL------ISWTSMITGFANHSLSHQALQLFEDMLLAG-VRPNQVTFVGALAACSN---A-- 502 (758)
Q Consensus 435 ~~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~---~-- 502 (758)
+.|++++|.+.|+.+....+ .+--.++-++-+.+++++|+..+++....- -.|| .-|...|.+++. .
T Consensus 46 ~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~~YlkgLs~~~~i~~ 124 (254)
T COG4105 46 QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYAYYLKGLSYFFQIDD 124 (254)
T ss_pred hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhccCCc
Confidence 56888888888888774322 233445667777888888888888877642 2333 233333333321 1
Q ss_pred --ccH---HHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCHHH--HHHHHHHHHHcCChhH
Q 004369 503 --GMV---YEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKMDFEPNEVI--WSVFIAGCRRHGNMEL 575 (758)
Q Consensus 503 --g~~---~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~--~~~ll~~~~~~g~~~~ 575 (758)
.+. .+|..-|+.++.++ |+.. -..+|..-+.... |... =.++..-|.+.|.+..
T Consensus 125 ~~rDq~~~~~A~~~f~~~i~ry---PnS~-------------Ya~dA~~~i~~~~---d~LA~~Em~IaryY~kr~~~~A 185 (254)
T COG4105 125 VTRDQSAARAAFAAFKELVQRY---PNSR-------------YAPDAKARIVKLN---DALAGHEMAIARYYLKRGAYVA 185 (254)
T ss_pred cccCHHHHHHHHHHHHHHHHHC---CCCc-------------chhhHHHHHHHHH---HHHHHHHHHHHHHHHHhcChHH
Confidence 122 23333344444332 2211 1111111111110 0000 0134556778888888
Q ss_pred HHHHHHHHhccCCCCc---hhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369 576 GFYAAEQLLKLKPKDC---ESYAMLLDIFVSAGRWEDVAVVKNLTRE 619 (758)
Q Consensus 576 a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 619 (758)
|..-++.+++.-|+.+ ..+..|..+|...|..++|.+..+.+..
T Consensus 186 A~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 186 AINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 8888888888766543 3555677788888988888888776654
No 247
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.71 E-value=0.64 Score=45.85 Aligned_cols=159 Identities=10% Similarity=-0.001 Sum_probs=111.5
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHH----HHHHHHHcCCH
Q 004369 466 NHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMC----LIDMFVRLGCI 541 (758)
Q Consensus 466 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~----li~~~~~~g~~ 541 (758)
-+|+..+|-..++++++. .+.|...+.-.=.+|...|+.+.-...++++.. ...||...|.. +.-++..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 367888888888888875 566677777777889999998888888888865 33555544433 33445688899
Q ss_pred HHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCC----CchhHHHHHHHhhhCCCchhHHHHHH
Q 004369 542 EEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPK----DCESYAMLLDIFVSAGRWEDVAVVKN 615 (758)
Q Consensus 542 ~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~ 615 (758)
++|++.-++. .+.| |.-.-.++.......|+..++.+.+.+--..=.. -.-.|-+.+-.|...+.++.|.++++
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999988887 6665 5556667777777888888888876654322111 12356667777778889999999887
Q ss_pred HhhhCCCCCCCc
Q 004369 616 LTREEKLSETDD 627 (758)
Q Consensus 616 ~m~~~~~~~~~~ 627 (758)
.=.-+.+.|..+
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 755545555544
No 248
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.65 E-value=1.1 Score=46.98 Aligned_cols=152 Identities=13% Similarity=0.109 Sum_probs=85.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004369 467 HSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFD 546 (758)
Q Consensus 467 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 546 (758)
..+...-+++-++.++ +.||-.+...++ +-..+..+.++.+++++..+. +- ..+..- ......|. ..+
T Consensus 181 ERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkA-gE----~~lg~s-~~~~~~g~---~~e 248 (539)
T PF04184_consen 181 ERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKA-GE----ASLGKS-QFLQHHGH---FWE 248 (539)
T ss_pred cCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHH-HH----Hhhchh-hhhhcccc---hhh
Confidence 4455566666666665 567755443333 334455678888888877652 10 000000 00001111 111
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCC--CchhHHHHHHHhhhCCCchhHHHHHHHhhhCCCCC
Q 004369 547 FIKKMDFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPK--DCESYAMLLDIFVSAGRWEDVAVVKNLTREEKLSE 624 (758)
Q Consensus 547 ~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 624 (758)
.+.+-...|-..+=..|...+++.|+.++|.+.++.+++..|. +......|+..+...+++.++..++.+-.+-.+.|
T Consensus 249 ~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpk 328 (539)
T PF04184_consen 249 AWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPK 328 (539)
T ss_pred hhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCc
Confidence 1111122222333455777777888888888888888877664 45577788888888888888888887765544444
Q ss_pred CCceeE
Q 004369 625 TDDWSW 630 (758)
Q Consensus 625 ~~~~s~ 630 (758)
...++|
T Consensus 329 SAti~Y 334 (539)
T PF04184_consen 329 SATICY 334 (539)
T ss_pred hHHHHH
Confidence 443333
No 249
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.61 E-value=2.5 Score=36.88 Aligned_cols=91 Identities=20% Similarity=0.255 Sum_probs=46.1
Q ss_pred hccccHHHHHHHHHHhhhhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHc----CCCCCHHHHHHHHHHHHH--c--
Q 004369 500 SNAGMVYEALGYFEMMQKEYKIKPV-MDHYMCLIDMFVRLGCIEEAFDFIKKM----DFEPNEVIWSVFIAGCRR--H-- 570 (758)
Q Consensus 500 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~ll~~~~~--~-- 570 (758)
.+.|++++|.+.|+.+...+...|- ....--|+++|.+.|++++|...+++. |..|+. -|-..+.|+.. .
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v-dYa~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV-DYAYYMRGLSYYEQDE 99 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc-cHHHHHHHHHHHHHhh
Confidence 3455666666666666554433332 223344556666666666666555554 222321 12222222211 1
Q ss_pred -------------CChhHHHHHHHHHhccCCCCc
Q 004369 571 -------------GNMELGFYAAEQLLKLKPKDC 591 (758)
Q Consensus 571 -------------g~~~~a~~~~~~~~~~~p~~~ 591 (758)
+....|...++++++.-|++.
T Consensus 100 ~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 100 GSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred hHHhhhcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 125567777888888888753
No 250
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.58 E-value=15 Score=41.08 Aligned_cols=48 Identities=15% Similarity=0.185 Sum_probs=30.0
Q ss_pred HHHHHHHHHhhcCChHHHHHHHhccCCCCcchHHHHHHHHhhCCChhh
Q 004369 212 VGNSLCSLYSTCGSLNSAIKAFNRIREKNVMSWTTVIGACGENGEAVQ 259 (758)
Q Consensus 212 ~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~ 259 (758)
++..+|+.+.-.|++++|-...-.|...+..-|.--+..+...++...
T Consensus 394 v~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~ 441 (846)
T KOG2066|consen 394 VGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTD 441 (846)
T ss_pred HHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccch
Confidence 344555666666777777776666666666666666666666655544
No 251
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.54 E-value=0.75 Score=44.29 Aligned_cols=112 Identities=9% Similarity=0.077 Sum_probs=85.9
Q ss_pred HHHHHHhccC--CCCcchHHHHHHHHhhC-----CChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccC----------
Q 004369 228 SAIKAFNRIR--EKNVMSWTTVIGACGEN-----GEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTML---------- 290 (758)
Q Consensus 228 ~A~~~f~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~---------- 290 (758)
..+..|...+ ++|-.+|-+++..+... +..+=....++.|.+-|+.-|..+|..||+.+-+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3456666666 57888888888777653 556666777889999999999999999999886543
Q ss_pred ------ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC-HHHHHHHHccCCC
Q 004369 291 ------SLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGL-VDEAQKLFDGMSH 339 (758)
Q Consensus 291 ------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~ 339 (758)
.-+-+..++++|...|+.||-.+-..|++++.+.+- ..+..++.-.|++
T Consensus 132 F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred HhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 235578899999999999999999999999998876 3445555555554
No 252
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=93.52 E-value=7.6 Score=37.50 Aligned_cols=28 Identities=7% Similarity=0.036 Sum_probs=23.5
Q ss_pred hHHHHHHHhhhCCCchhHHHHHHHhhhC
Q 004369 593 SYAMLLDIFVSAGRWEDVAVVKNLTREE 620 (758)
Q Consensus 593 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 620 (758)
.-..+++.|.+.|.|.-|..-++.|.+.
T Consensus 169 ~Em~IaryY~kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 169 HEMAIARYYLKRGAYVAAINRFEEVLEN 196 (254)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 3456788899999999999999999873
No 253
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=93.49 E-value=13 Score=42.17 Aligned_cols=70 Identities=17% Similarity=0.052 Sum_probs=42.0
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccCCh-------HHHHHHHHHHHHhCCCCChh
Q 004369 140 VVSWTSLISGYVQNSQPELAIHVFLDMLEAGNYPTNVTLGTALTACSSLESI-------RLGKQIHAYVVKYQTEDDTS 211 (758)
Q Consensus 140 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~-------~~a~~~~~~~~~~g~~~~~~ 211 (758)
...| ++|=-+.|.|++++|.++..+... ........|...+..+....+- +....-+.+.++.....|++
T Consensus 112 ~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dpy 188 (613)
T PF04097_consen 112 DPIW-ALIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPY 188 (613)
T ss_dssp EEHH-HHHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HH
T ss_pred CccH-HHHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChH
Confidence 3445 556677899999999999866544 3555677888888888775332 23444455555444433554
No 254
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.37 E-value=1.8 Score=42.88 Aligned_cols=175 Identities=10% Similarity=0.049 Sum_probs=114.3
Q ss_pred hcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHH--HHHhccccHHH
Q 004369 435 KCGRIERASRVFVEMS---TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQV--TFVGAL--AACSNAGMVYE 507 (758)
Q Consensus 435 ~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll--~a~~~~g~~~~ 507 (758)
-.|+..+|-..++++. +.|..+|+--=.+|..+|+-+.-...+++.... ..||.. +|..=+ -++...|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 3577888877788776 458889998889999999999999999988764 355543 332222 24567899999
Q ss_pred HHHHHHHhhhhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHcC--CCC-C---HHHHHHHHHHHHHcCChhHHHHHH
Q 004369 508 ALGYFEMMQKEYKIKP-VMDHYMCLIDMFVRLGCIEEAFDFIKKMD--FEP-N---EVIWSVFIAGCRRHGNMELGFYAA 580 (758)
Q Consensus 508 a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p-~---~~~~~~ll~~~~~~g~~~~a~~~~ 580 (758)
|.+.-++..+ +.| |...-.+....+-..|++.|+.+++.+-. .+- + ...|-...-.+...+.++.|+++|
T Consensus 194 AEk~A~ralq---iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 194 AEKQADRALQ---INRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred HHHHHHhhcc---CCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 9988877754 333 45566678888899999999999988762 110 0 011222222344558899999998
Q ss_pred HHHh--ccCCCCchhHH---HHHHHhhhCCCchhHHHH
Q 004369 581 EQLL--KLKPKDCESYA---MLLDIFVSAGRWEDVAVV 613 (758)
Q Consensus 581 ~~~~--~~~p~~~~~~~---~l~~~~~~~g~~~~a~~~ 613 (758)
.+-+ +++.+|..... -+--+....-.|.+-.++
T Consensus 271 D~ei~k~l~k~Da~a~~~~ld~dgv~~~~d~~~kld~l 308 (491)
T KOG2610|consen 271 DREIWKRLEKDDAVARDVYLDLDGVDLRSDLWRKLDKL 308 (491)
T ss_pred HHHHHHHhhccchhhhhhhhhhhhHHhHHHHHHHHHhh
Confidence 6543 45566654333 233333444444444433
No 255
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.30 E-value=3.1 Score=36.69 Aligned_cols=22 Identities=18% Similarity=0.224 Sum_probs=10.5
Q ss_pred HHHHHHhccccHHHHHHHHHHh
Q 004369 494 GALAACSNAGMVYEALGYFEMM 515 (758)
Q Consensus 494 ~ll~a~~~~g~~~~a~~~~~~~ 515 (758)
.++..|.+.+.++++..++..+
T Consensus 74 ~~~~~c~~~~l~~~~~~l~~k~ 95 (140)
T smart00299 74 KVGKLCEKAKLYEEAVELYKKD 95 (140)
T ss_pred HHHHHHHHcCcHHHHHHHHHhh
Confidence 3444455555555555444443
No 256
>PRK15331 chaperone protein SicA; Provisional
Probab=93.25 E-value=1.9 Score=38.59 Aligned_cols=90 Identities=14% Similarity=-0.015 Sum_probs=66.3
Q ss_pred HHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhH
Q 004369 498 ACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMEL 575 (758)
Q Consensus 498 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~ 575 (758)
-+...|++++|..+|.-+.. ++ .-+..-+..|...+-..+++++|+..|... -+.+ |+...-.....+...|+.+.
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~-~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCI-YD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHH-hC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHH
Confidence 44578999999999998865 22 223455677888888899999999998876 2222 44445567778888999999
Q ss_pred HHHHHHHHhccCCCC
Q 004369 576 GFYAAEQLLKLKPKD 590 (758)
Q Consensus 576 a~~~~~~~~~~~p~~ 590 (758)
|+..++.+++ .|.+
T Consensus 124 A~~~f~~a~~-~~~~ 137 (165)
T PRK15331 124 ARQCFELVNE-RTED 137 (165)
T ss_pred HHHHHHHHHh-Ccch
Confidence 9999998887 3443
No 257
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.18 E-value=0.54 Score=42.84 Aligned_cols=90 Identities=13% Similarity=0.131 Sum_probs=69.3
Q ss_pred HHHHHcCCHHHHHHHHHHc-CCCC------CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCC
Q 004369 533 DMFVRLGCIEEAFDFIKKM-DFEP------NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAG 605 (758)
Q Consensus 533 ~~~~~~g~~~~A~~~~~~m-~~~p------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 605 (758)
+-+.+.|.+++|..-|.++ ..-| ..+.|..-..+..+.+..+.|+....++++++|....+...-+.+|.+..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 3455677888887777766 2222 13345555567778899999999999999999988888888899999999
Q ss_pred CchhHHHHHHHhhhCCC
Q 004369 606 RWEDVAVVKNLTREEKL 622 (758)
Q Consensus 606 ~~~~a~~~~~~m~~~~~ 622 (758)
++++|..-++.+.+...
T Consensus 183 k~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 183 KYEEALEDYKKILESDP 199 (271)
T ss_pred hHHHHHHHHHHHHHhCc
Confidence 99999999999887443
No 258
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.14 E-value=18 Score=40.79 Aligned_cols=118 Identities=7% Similarity=0.003 Sum_probs=68.8
Q ss_pred HHHHHHHhhcCCChHHHHHHHccCCCCCcchHHHHHH----HHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcc
Q 004369 112 MTFLVNVYGKCGNMEEAQKVFDNLPRINVVSWTSLIS----GYVQNSQPELAIHVFLDMLEAGNYPTNVTLGTALTACSS 187 (758)
Q Consensus 112 ~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~----~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 187 (758)
...-++++.+...++-|..+-+.-.. |...-..+.. -+-+.|++++|..-|-+-... +.| ..+++-+-.
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLd 409 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLD 409 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcC
Confidence 34456677777777777777655332 2222222222 234678888888877665432 333 234444544
Q ss_pred cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHhhcCChHHHHHHHhccC
Q 004369 188 LESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGSLNSAIKAFNRIR 237 (758)
Q Consensus 188 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~ 237 (758)
......-..+++.+.+.|+... .--+.|+..|.+.++.+.-.++.+...
T Consensus 410 aq~IknLt~YLe~L~~~gla~~-dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGLANS-DHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HHHHHHHHHHHHHHHHcccccc-hhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 4455555556666677776432 333567788888887777776666554
No 259
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.12 E-value=0.99 Score=43.74 Aligned_cols=86 Identities=19% Similarity=0.145 Sum_probs=45.3
Q ss_pred hcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCH-HHHHHHHHHHHHcCCHH
Q 004369 466 NHSLSHQALQLFEDMLLAGVRP--NQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVM-DHYMCLIDMFVRLGCIE 542 (758)
Q Consensus 466 ~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~ 542 (758)
+.|++.+|...|...++....- ....+-.|..++...|++++|..+|..+.++++-.|.. +.+-.|.....+.|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 3455666666666666532110 01223345555666666666666666666555544442 45555555555555555
Q ss_pred HHHHHHHHc
Q 004369 543 EAFDFIKKM 551 (758)
Q Consensus 543 ~A~~~~~~m 551 (758)
+|...+++.
T Consensus 233 ~A~atl~qv 241 (262)
T COG1729 233 EACATLQQV 241 (262)
T ss_pred HHHHHHHHH
Confidence 555555554
No 260
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.09 E-value=11 Score=44.29 Aligned_cols=107 Identities=17% Similarity=0.122 Sum_probs=55.9
Q ss_pred hcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHH
Q 004369 435 KCGRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEM 514 (758)
Q Consensus 435 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 514 (758)
+.|.+.+|..++..=.++-...|.+...-+...+.+++|.-+|+..-+ ..-.+.+|-..|+|.+|..+..+
T Consensus 920 kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~q 990 (1265)
T KOG1920|consen 920 KHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQ 990 (1265)
T ss_pred hcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHh
Confidence 444444444444322222223344444444445666666655554321 12234566667777777777666
Q ss_pred hhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcC
Q 004369 515 MQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKMD 552 (758)
Q Consensus 515 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 552 (758)
+.. +-.--..+-..|+..+...++.-||-++..+..
T Consensus 991 l~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 991 LSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred hcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 643 221122333566777777777777777777663
No 261
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.03 E-value=5.2 Score=35.22 Aligned_cols=74 Identities=12% Similarity=0.171 Sum_probs=33.0
Q ss_pred ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHhhcCChHHHHHHHhccCCCCcchHHHHHHHHhhCCChhhHHHHHHHH
Q 004369 190 SIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGSLNSAIKAFNRIREKNVMSWTTVIGACGENGEAVQGLRFFSKM 267 (758)
Q Consensus 190 ~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 267 (758)
.......+++.+++.+ ..+....+.|+..|++.+ ..+....+.. ..+......+++.|.+.+.++++.-++.++
T Consensus 22 ~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~~~~~l~~k~ 95 (140)
T smart00299 22 LLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLYEEAVELYKKD 95 (140)
T ss_pred cHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 3333334444443333 134445555555555442 2233333331 123333444555555555555555555554
No 262
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.83 E-value=3 Score=40.92 Aligned_cols=120 Identities=14% Similarity=0.042 Sum_probs=78.3
Q ss_pred HHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCHHHHHH---HHHHHHHcCChh
Q 004369 498 ACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKMDFEPNEVIWSV---FIAGCRRHGNME 574 (758)
Q Consensus 498 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~---ll~~~~~~g~~~ 574 (758)
.....|+..++...|+..... .+-+...--.|+.+|...|+.++|..++..++.+-...-|.. =+....+..+..
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 345677778888877777652 222345566778888888888888888888854433333333 122233333333
Q ss_pred HHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhhC
Q 004369 575 LGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREE 620 (758)
Q Consensus 575 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 620 (758)
+.. .+++-+..+|+|...-..|+..|...|+.++|...+=.+.++
T Consensus 221 ~~~-~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 221 EIQ-DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred CHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 222 244555678988889999999999999999998876666554
No 263
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.68 E-value=11 Score=37.13 Aligned_cols=154 Identities=16% Similarity=0.121 Sum_probs=101.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCC-HHHHHHHHHHHHHcC
Q 004369 461 ITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPV-MDHYMCLIDMFVRLG 539 (758)
Q Consensus 461 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g 539 (758)
.......|+..+|..+|+...... .-+...-..+..++...|+.+.|..++..+-.+ ..-+ ......-+..+.+..
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~--~~~~~~~~l~a~i~ll~qaa 217 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ--AQDKAAHGLQAQIELLEQAA 217 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCccc--chhhHHHHHHHHHHHHHHHh
Confidence 345567788888888888887753 222445566777888899999999888877442 1111 111233456666666
Q ss_pred CHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccC--CCCchhHHHHHHHhhhCCCchh-HHHHHH
Q 004369 540 CIEEAFDFIKKMDFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLK--PKDCESYAMLLDIFVSAGRWED-VAVVKN 615 (758)
Q Consensus 540 ~~~~A~~~~~~m~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~-a~~~~~ 615 (758)
...+...+-.+..-.| |...--.|...+...|+.+.|.+.+-.+++.+ -.|...-..|..++...|.-+. +.+.++
T Consensus 218 ~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RR 297 (304)
T COG3118 218 ATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRR 297 (304)
T ss_pred cCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 6666666666665566 55666677888888899888888777777654 4466777788888877775443 344444
Q ss_pred Hh
Q 004369 616 LT 617 (758)
Q Consensus 616 ~m 617 (758)
++
T Consensus 298 kL 299 (304)
T COG3118 298 KL 299 (304)
T ss_pred HH
Confidence 44
No 264
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.62 E-value=1.6 Score=46.71 Aligned_cols=130 Identities=17% Similarity=0.251 Sum_probs=68.9
Q ss_pred HhcCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHH
Q 004369 465 ANHSLSHQALQLFEDML-LAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEE 543 (758)
Q Consensus 465 ~~~g~~~~A~~~~~~m~-~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 543 (758)
...|+++++.++.+.-. -..++ ..-...++.-+.+.|..+.|+++-..-.. -.++..+.|+++.
T Consensus 272 v~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~~-------------rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPDH-------------RFELALQLGNLDI 336 (443)
T ss_dssp HHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH-------------HHHHHHHCT-HHH
T ss_pred HHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChHH-------------HhHHHHhcCCHHH
Confidence 34566666555553111 11111 23355566666667777777655332211 2345556777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhhC
Q 004369 544 AFDFIKKMDFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREE 620 (758)
Q Consensus 544 A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 620 (758)
|.++.++.. +...|..|.......|+++.|++++++. .-+..|.-.|...|+.+.-.++-+....+
T Consensus 337 A~~~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k~--------~d~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 337 ALEIAKELD---DPEKWKQLGDEALRQGNIELAEECYQKA--------KDFSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHHCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHHC--------T-HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHhh--------cCccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 777665532 5667777777777777777777777764 34566666677777766665555555543
No 265
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.55 E-value=15 Score=39.07 Aligned_cols=98 Identities=16% Similarity=0.239 Sum_probs=61.1
Q ss_pred HHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcC-C-CCCH--HHHHHHHHHHHH
Q 004369 494 GALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKMD-F-EPNE--VIWSVFIAGCRR 569 (758)
Q Consensus 494 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~-~p~~--~~~~~ll~~~~~ 569 (758)
.+..++-+.|+.++|.+.+.+|.+++...........|+..|...+.+.++..++.+.. + -|.. ..|+..+-..+.
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRa 343 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARA 343 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHh
Confidence 34445567788888888888877644332334455667888888888888888887762 2 2332 335554444443
Q ss_pred cCCh---------------hHHHHHHHHHhccCCCCc
Q 004369 570 HGNM---------------ELGFYAAEQLLKLKPKDC 591 (758)
Q Consensus 570 ~g~~---------------~~a~~~~~~~~~~~p~~~ 591 (758)
.++. ..|.++..++++.+|.-+
T Consensus 344 v~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 344 VGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred hccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 3331 235678888888887644
No 266
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=92.39 E-value=23 Score=40.11 Aligned_cols=80 Identities=13% Similarity=0.046 Sum_probs=38.7
Q ss_pred CCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcC-CCChHHHHhHHhhhHHh---cCCHHH
Q 004369 366 HNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTG-FLSDVVVGTALVNMYKK---CGRIER 441 (758)
Q Consensus 366 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~-~~~~~~~~~~Li~~y~~---~g~~~~ 441 (758)
.|+++.|++.+.+ ..+...|.+.+...+.-+.-..-.+... ..+.... -.+...-+..||..|.+ ..+..+
T Consensus 271 tgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~td~~~ 345 (613)
T PF04097_consen 271 TGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEITDPRE 345 (613)
T ss_dssp TT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTTT-HHH
T ss_pred HhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhccCHHH
Confidence 8999999998876 3445678888877776654433222211 2111111 01112446677777776 457777
Q ss_pred HHHHHHhcC
Q 004369 442 ASRVFVEMS 450 (758)
Q Consensus 442 A~~~~~~~~ 450 (758)
|.+.|--+.
T Consensus 346 Al~Y~~li~ 354 (613)
T PF04097_consen 346 ALQYLYLIC 354 (613)
T ss_dssp HHHHHHGGG
T ss_pred HHHHHHHHH
Confidence 777776554
No 267
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=92.28 E-value=16 Score=38.13 Aligned_cols=120 Identities=16% Similarity=0.154 Sum_probs=65.3
Q ss_pred CHHHHHHHHHhcC---CCChhHHHHHH----HHHHh---cCCHHHHHHHHHHHHHcCCCCCHHH----HHHHHH--HHhc
Q 004369 438 RIERASRVFVEMS---TRTLISWTSMI----TGFAN---HSLSHQALQLFEDMLLAGVRPNQVT----FVGALA--ACSN 501 (758)
Q Consensus 438 ~~~~A~~~~~~~~---~~~~~~~~~li----~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t----~~~ll~--a~~~ 501 (758)
+-++|..+++.+. ..|..+-|... .+|.+ .....+-+.+-+-..+.|+.|-.+. -+.+.. -+..
T Consensus 395 ~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLys 474 (549)
T PF07079_consen 395 CDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYS 474 (549)
T ss_pred ccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHh
Confidence 3677777777655 33444433322 12222 1223333444444455666664332 222222 1334
Q ss_pred cccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCHHHHHH
Q 004369 502 AGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKMDFEPNEVIWSV 562 (758)
Q Consensus 502 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ 562 (758)
.|++.++.-+-..+. .+.|++.+|..+.-.+....+++||.+++...| |+..+|++
T Consensus 475 qgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~ds 530 (549)
T PF07079_consen 475 QGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRDS 530 (549)
T ss_pred cccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHHH
Confidence 677777665554443 467777777777777777777788888777764 45555544
No 268
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.24 E-value=14 Score=37.15 Aligned_cols=121 Identities=12% Similarity=0.085 Sum_probs=55.6
Q ss_pred CC-ChhHHHHHHHHhHhC--------CCCCCH-----HHHHHHHHHHhcccchH---HHHHHHHHHHHcCCCChHHHHhH
Q 004369 366 HN-GGTEALSIFSKLNSS--------GMKPDL-----YTFSSILTICSRLVALE---QGEQIHALTLKTGFLSDVVVGTA 428 (758)
Q Consensus 366 ~g-~~~~A~~l~~~m~~~--------g~~p~~-----~t~~~ll~a~~~~~~~~---~a~~i~~~~~~~~~~~~~~~~~~ 428 (758)
.+ ++++|..++++..+- ...|+. .++..+..++...+..+ .+..+.+.+... .+..+.++-.
T Consensus 48 ~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L 126 (278)
T PF08631_consen 48 KKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLL 126 (278)
T ss_pred cCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHH
Confidence 44 677776666654321 123333 24445555665555443 334444444332 1222333333
Q ss_pred HhhhHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHH---HhcCCHHHHHHHHHHHHHcCCCCC
Q 004369 429 LVNMYKKCGRIERASRVFVEMSTR---TLISWTSMITGF---ANHSLSHQALQLFEDMLLAGVRPN 488 (758)
Q Consensus 429 Li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~---~~~g~~~~A~~~~~~m~~~g~~p~ 488 (758)
-+..+.+.++.+.+.+++.+|... ....+...+..+ ..+ ....|...+.++....+.|.
T Consensus 127 ~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~ 191 (278)
T PF08631_consen 127 KLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEK-SPELAAFCLDYLLLNRFKSS 191 (278)
T ss_pred HHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhh-CcHHHHHHHHHHHHHHhCCC
Confidence 344455566677777777666522 123344433333 222 23445555555544444443
No 269
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=91.91 E-value=5.8 Score=39.90 Aligned_cols=221 Identities=15% Similarity=0.097 Sum_probs=126.4
Q ss_pred CCChhHHHHHHHHhHhC--CCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHc--CCCCh---HHHHhHHhhhHHhcCC
Q 004369 366 HNGGTEALSIFSKLNSS--GMKPDLYTFSSILTICSRLVALEQGEQIHALTLKT--GFLSD---VVVGTALVNMYKKCGR 438 (758)
Q Consensus 366 ~g~~~~A~~l~~~m~~~--g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~--~~~~~---~~~~~~Li~~y~~~g~ 438 (758)
..+.++|+..+.+-... ...--..+|..+..+.+..|..+++...-.-.++. ..... ...|-.|...+-+.-+
T Consensus 19 s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~ 98 (518)
T KOG1941|consen 19 SNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCE 98 (518)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666676666655432 11112235555666666666666654432111110 01111 2234444555555555
Q ss_pred HHHHHHHHHhcC------C-C-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHhccccH
Q 004369 439 IERASRVFVEMS------T-R-TLISWTSMITGFANHSLSHQALQLFEDMLLAGVRP-----NQVTFVGALAACSNAGMV 505 (758)
Q Consensus 439 ~~~A~~~~~~~~------~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----~~~t~~~ll~a~~~~g~~ 505 (758)
+.+++.+=..-. . . .-....+|..++.-.+.++++++.|+...+-.-.. .-..+.+|-.-+.+..++
T Consensus 99 f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~ 178 (518)
T KOG1941|consen 99 FHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDY 178 (518)
T ss_pred hhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhh
Confidence 555554433211 1 1 11233446667777788999999999877632111 135678888888899999
Q ss_pred HHHHHHHHHhhh---hcCCCCCHHHHHH-----HHHHHHHcCCHHHHHHHHHHc-------CCCC-CHHHHHHHHHHHHH
Q 004369 506 YEALGYFEMMQK---EYKIKPVMDHYMC-----LIDMFVRLGCIEEAFDFIKKM-------DFEP-NEVIWSVFIAGCRR 569 (758)
Q Consensus 506 ~~a~~~~~~~~~---~~~~~p~~~~~~~-----li~~~~~~g~~~~A~~~~~~m-------~~~p-~~~~~~~ll~~~~~ 569 (758)
++|.-+...+.+ .+++.--..-|.+ |.-+|...|++-+|.+.-++. |-+| -......+.+.|+.
T Consensus 179 ~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~ 258 (518)
T KOG1941|consen 179 EKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRS 258 (518)
T ss_pred hHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHh
Confidence 998776654432 2343332223333 334566777777776666554 4343 34457788899999
Q ss_pred cCChhHHHHHHHHHhcc
Q 004369 570 HGNMELGFYAAEQLLKL 586 (758)
Q Consensus 570 ~g~~~~a~~~~~~~~~~ 586 (758)
.|+.|.|..-|+.+...
T Consensus 259 ~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 259 RGDLERAFRRYEQAMGT 275 (518)
T ss_pred cccHhHHHHHHHHHHHH
Confidence 99999999988888753
No 270
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=91.45 E-value=0.43 Score=32.16 Aligned_cols=37 Identities=22% Similarity=0.571 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHH
Q 004369 527 HYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVF 563 (758)
Q Consensus 527 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l 563 (758)
.+..+...|.+.|++++|++++++. ...| |...|..|
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence 4556677777777777777777776 5555 44455544
No 271
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=91.40 E-value=1.6 Score=36.85 Aligned_cols=53 Identities=21% Similarity=0.134 Sum_probs=23.2
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhh
Q 004369 464 FANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQK 517 (758)
Q Consensus 464 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 517 (758)
++..|+.+.|++.|.+.+.. .+-+...|+.-..++.-.|+.++|+.-+++..+
T Consensus 53 laE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 34444444444444444442 111233444444444444444444444444443
No 272
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=90.86 E-value=2.9 Score=45.45 Aligned_cols=128 Identities=20% Similarity=0.174 Sum_probs=89.3
Q ss_pred HHHHHHHhccccHHHHHHHHHHhhhhcCCCCCH-----HHHHHHHHHHH----HcCCHHHHHHHHHHc-CCCCCHHHHHH
Q 004369 493 VGALAACSNAGMVYEALGYFEMMQKEYKIKPVM-----DHYMCLIDMFV----RLGCIEEAFDFIKKM-DFEPNEVIWSV 562 (758)
Q Consensus 493 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~li~~~~----~~g~~~~A~~~~~~m-~~~p~~~~~~~ 562 (758)
..+++...-.|+-+.|++.+....+..++.-.. -.|...+..+. .....++|.++++.+ ..-|+...|..
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~ 271 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLF 271 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence 445555566677777777777765533333322 12333332222 355788999999999 55688887765
Q ss_pred HH-HHHHHcCChhHHHHHHHHHhccCCC----CchhHHHHHHHhhhCCCchhHHHHHHHhhhC
Q 004369 563 FI-AGCRRHGNMELGFYAAEQLLKLKPK----DCESYAMLLDIFVSAGRWEDVAVVKNLTREE 620 (758)
Q Consensus 563 ll-~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 620 (758)
.- ..+...|+.++|.+.++++...... ....+.-+++.+.-.++|++|.+.+..+.+.
T Consensus 272 ~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 272 FEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE 334 (468)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc
Confidence 54 4467789999999999988753321 3457788999999999999999999999874
No 273
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=90.78 E-value=5.1 Score=42.98 Aligned_cols=157 Identities=12% Similarity=0.061 Sum_probs=93.4
Q ss_pred HHHhCCCchHHHHHHH--HHHHcCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHhhcCCh
Q 004369 149 GYVQNSQPELAIHVFL--DMLEAGNYPTNVTLGTALTACSSLESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGSL 226 (758)
Q Consensus 149 ~~~~~g~~~~A~~~~~--~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~ 226 (758)
..+-+++++++.+... ++.. .++ ..-...++.-+.+.|..+.|.++-.. + ..-.+...++|++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~-~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D---------~---~~rFeLAl~lg~L 334 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLP-NIP--KDQGQSIARFLEKKGYPELALQFVTD---------P---DHRFELALQLGNL 334 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-H
T ss_pred HHHHcCChhhhhhhhhhhhhcc-cCC--hhHHHHHHHHHHHCCCHHHHHhhcCC---------h---HHHhHHHHhcCCH
Confidence 3445666666555543 1111 111 23355555556666666666554221 1 1233456688999
Q ss_pred HHHHHHHhccCCCCcchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHHHHHHHHHHHhC
Q 004369 227 NSAIKAFNRIREKNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKLG 306 (758)
Q Consensus 227 ~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 306 (758)
+.|.++.++.. +...|..|.....+.|+.+-|.+.|.+... |..++-.+...|+.+.-.++-......|
T Consensus 335 ~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 335 DIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 99998887765 566899999999999999999999988654 5566666677788777777777776665
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHccC
Q 004369 307 YASNLRVRNSIMYLYLKCGLVDEAQKLFDGM 337 (758)
Q Consensus 307 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 337 (758)
- +|.-..++.-.|++++..+++.+-
T Consensus 404 ~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 404 D------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp -------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred C------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 1 344455556668888877776553
No 274
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=90.23 E-value=15 Score=34.34 Aligned_cols=158 Identities=13% Similarity=0.107 Sum_probs=87.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHH
Q 004369 454 LISWTSMITGFANHSLSHQALQLFEDMLLAGVRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLI 532 (758)
Q Consensus 454 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 532 (758)
+..||-+.--+...|+++.|.+.|+...+. .|. ..++..-.-++.-.|++.-|.+-|-..-..-.-.|=...|-.++
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~ 176 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN 176 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhcc--CCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH
Confidence 356777777777788888888888887764 332 22222222244456777777766555433222233233333332
Q ss_pred HHHHHcCCHHHHHHHH-HHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCC-------chhHHHHHHHhhhC
Q 004369 533 DMFVRLGCIEEAFDFI-KKMDFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKD-------CESYAMLLDIFVSA 604 (758)
Q Consensus 533 ~~~~~~g~~~~A~~~~-~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~ 604 (758)
. +.-+..+|..-+ ++. ..-|..-|...+-.+.- |+.. .+.+++++.+-..++ .++|.-|+.-|...
T Consensus 177 E---~k~dP~~A~tnL~qR~-~~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~ 250 (297)
T COG4785 177 E---QKLDPKQAKTNLKQRA-EKSDKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSL 250 (297)
T ss_pred H---hhCCHHHHHHHHHHHH-HhccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcc
Confidence 2 333556665433 333 12244556555544432 2211 122233333222221 46889999999999
Q ss_pred CCchhHHHHHHHhhh
Q 004369 605 GRWEDVAVVKNLTRE 619 (758)
Q Consensus 605 g~~~~a~~~~~~m~~ 619 (758)
|..++|..+++....
T Consensus 251 G~~~~A~~LfKLaia 265 (297)
T COG4785 251 GDLDEATALFKLAVA 265 (297)
T ss_pred ccHHHHHHHHHHHHH
Confidence 999999999998865
No 275
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=90.15 E-value=16 Score=38.09 Aligned_cols=67 Identities=19% Similarity=0.277 Sum_probs=56.0
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCC----CchhHHHHHHHhhhCCCchhHHHHHHHhhhCCC
Q 004369 556 NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPK----DCESYAMLLDIFVSAGRWEDVAVVKNLTREEKL 622 (758)
Q Consensus 556 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 622 (758)
...+|..+...+++.|+++.|...+.++...++. .+.....-+......|+-.+|....+...+..+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 5668999999999999999999999999986522 456777788999999999999998888776333
No 276
>PRK09687 putative lyase; Provisional
Probab=90.14 E-value=22 Score=35.65 Aligned_cols=74 Identities=9% Similarity=-0.007 Sum_probs=35.6
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCH
Q 004369 309 SNLRVRNSIMYLYLKCGLVDEAQKLFDGMSHVNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDL 388 (758)
Q Consensus 309 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~ 388 (758)
++..+...-+.++.+.|+.+-.-.+.+.+..++ ..-..+.+... .|.. +|+..+.++... .||.
T Consensus 204 ~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~-----------ig~~-~a~p~L~~l~~~--~~d~ 267 (280)
T PRK09687 204 KNEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGE-----------LGDK-TLLPVLDTLLYK--FDDN 267 (280)
T ss_pred CChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHh-----------cCCH-hHHHHHHHHHhh--CCCh
Confidence 344445555555555555333333333333332 12234444444 5553 567777666653 3455
Q ss_pred HHHHHHHHHH
Q 004369 389 YTFSSILTIC 398 (758)
Q Consensus 389 ~t~~~ll~a~ 398 (758)
..-...+.+|
T Consensus 268 ~v~~~a~~a~ 277 (280)
T PRK09687 268 EIITKAIDKL 277 (280)
T ss_pred hHHHHHHHHH
Confidence 5555555544
No 277
>PRK09687 putative lyase; Provisional
Probab=89.94 E-value=23 Score=35.54 Aligned_cols=80 Identities=9% Similarity=-0.074 Sum_probs=33.1
Q ss_pred hHHHHhHHhhhHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 004369 422 DVVVGTALVNMYKKCGRIERASRVFVEMSTRTLISWTSMITGFANHS-LSHQALQLFEDMLLAGVRPNQVTFVGALAACS 500 (758)
Q Consensus 422 ~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 500 (758)
+..+-...+.++++.|+.+....+..-+..+|...-..-+.++.+.+ ....+...+..+.. .+|..+-...+.++.
T Consensus 141 ~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg 217 (280)
T PRK09687 141 STNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLA 217 (280)
T ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHH
Confidence 44444445555555555332222223333333333333333333322 12344444444442 334444444555555
Q ss_pred cccc
Q 004369 501 NAGM 504 (758)
Q Consensus 501 ~~g~ 504 (758)
+.|+
T Consensus 218 ~~~~ 221 (280)
T PRK09687 218 LRKD 221 (280)
T ss_pred ccCC
Confidence 5554
No 278
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=89.74 E-value=28 Score=36.21 Aligned_cols=168 Identities=14% Similarity=0.034 Sum_probs=90.0
Q ss_pred CCChhHHHHHHHHhHhCC---CCCCHHHHHHHHHHHhc---ccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCH
Q 004369 366 HNGGTEALSIFSKLNSSG---MKPDLYTFSSILTICSR---LVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRI 439 (758)
Q Consensus 366 ~g~~~~A~~l~~~m~~~g---~~p~~~t~~~ll~a~~~---~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~ 439 (758)
..+++..+++++.|...- +.-....--...-|+.+ .|+.+.|.+++..+....-.++..++..+...|-.
T Consensus 154 iqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD---- 229 (374)
T PF13281_consen 154 IQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKD---- 229 (374)
T ss_pred hhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHH----
Confidence 788888888888887631 11111111122334445 77888888887775555555666666665555532
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHhccc-cHHHHHHHH---
Q 004369 440 ERASRVFVEMSTRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVT---FVGALAACSNAG-MVYEALGYF--- 512 (758)
Q Consensus 440 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t---~~~ll~a~~~~g-~~~~a~~~~--- 512 (758)
.|.+....|.. ..++|+..|++.-+ +.||..+ +..|+....+.. .-.+..++-
T Consensus 230 -----~~~~s~~~d~~-------------~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l 289 (374)
T PF13281_consen 230 -----LFLESNFTDRE-------------SLDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKL 289 (374)
T ss_pred -----HHHHcCccchH-------------HHHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCcccchHHHHHHHHHH
Confidence 12211111111 26677777777665 3465332 333443333211 112222222
Q ss_pred HHhhhhcCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCCH
Q 004369 513 EMMQKEYKI---KPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEPNE 557 (758)
Q Consensus 513 ~~~~~~~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~ 557 (758)
..+..+.|. ..+-..+..+..+..-.|+.++|.+..++| ...|..
T Consensus 290 ~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 290 SSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 111111122 234455678888888999999999999998 555443
No 279
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=89.58 E-value=0.5 Score=29.52 Aligned_cols=31 Identities=19% Similarity=0.195 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhccCCC
Q 004369 559 IWSVFIAGCRRHGNMELGFYAAEQLLKLKPK 589 (758)
Q Consensus 559 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 589 (758)
+|..+...+...|++++|...+++.++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5667777777888888888888888877774
No 280
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.37 E-value=2.5 Score=41.67 Aligned_cols=76 Identities=11% Similarity=0.158 Sum_probs=61.1
Q ss_pred HHHHhHHhhhHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHHHH
Q 004369 423 VVVGTALVNMYKKCGRIERASRVFVEMST---RTLISWTSMITGFANHSLSHQALQLFEDMLL-----AGVRPNQVTFVG 494 (758)
Q Consensus 423 ~~~~~~Li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~~ 494 (758)
..++..++..+..+|+.+.+...+++... -|...|..++.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 45677888999999999999999988764 3667899999999999999999999998875 577777666555
Q ss_pred HHHH
Q 004369 495 ALAA 498 (758)
Q Consensus 495 ll~a 498 (758)
...+
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4444
No 281
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.33 E-value=13 Score=33.21 Aligned_cols=90 Identities=11% Similarity=0.107 Sum_probs=57.7
Q ss_pred HHHhccccHHHHHHHHHHhhhhcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCChh
Q 004369 497 AACSNAGMVYEALGYFEMMQKEYKIKPVM-DHYMCLIDMFVRLGCIEEAFDFIKKM-DFEPNEVIWSVFIAGCRRHGNME 574 (758)
Q Consensus 497 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~ 574 (758)
..-.+.++.+++..++..+.- +.|.. +.-..-...+.+.|++.+|+.+|+++ .-.|....-..|+..|.....-.
T Consensus 18 ~~al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP 94 (160)
T ss_pred HHHHccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence 334566788888888888754 44542 22233445677889999999999988 33455555566776666655444
Q ss_pred HHHHHHHHHhccCCC
Q 004369 575 LGFYAAEQLLKLKPK 589 (758)
Q Consensus 575 ~a~~~~~~~~~~~p~ 589 (758)
.=....+++++..++
T Consensus 95 ~Wr~~A~evle~~~d 109 (160)
T PF09613_consen 95 SWRRYADEVLESGAD 109 (160)
T ss_pred HHHHHHHHHHhcCCC
Confidence 445566667776654
No 282
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=89.07 E-value=0.56 Score=29.95 Aligned_cols=25 Identities=24% Similarity=0.147 Sum_probs=13.6
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHh
Q 004369 560 WSVFIAGCRRHGNMELGFYAAEQLL 584 (758)
Q Consensus 560 ~~~ll~~~~~~g~~~~a~~~~~~~~ 584 (758)
|..|...|.+.|++++|+.++++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555555555555555555555543
No 283
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=88.94 E-value=10 Score=34.33 Aligned_cols=133 Identities=12% Similarity=0.095 Sum_probs=85.0
Q ss_pred HHHHHHHHHcCCCCCcchHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCCch-hHHHHHHHHhhcC-CChHHHHHHHccCC
Q 004369 59 FQEALSVLTEGPKVQTSSYVSLLQECVNRKSLSNAEIIHAHIVKTGSHQDF-FVMTFLVNVYGKC-GNMEEAQKVFDNLP 136 (758)
Q Consensus 59 ~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~li~~~~~~-g~~~~A~~~f~~~~ 136 (758)
+++.+.+.+.+++|+...+..+++.+.+.|++..-. +++..++-+|. .+...|++.-.+. .-..-|.+.+.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 466777788899999999999999999999875443 44455555554 4444444332221 11333445555544
Q ss_pred CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHH
Q 004369 137 RINVVSWTSLISGYVQNSQPELAIHVFLDMLEAGNYPTNVTLGTALTACSSLESIRLGKQIHAYVVK 203 (758)
Q Consensus 137 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 203 (758)
..+..++..+...|++-+|+++.+..... +...-..++.+..+.+|...-..++.....
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 24778888999999999999998875332 223334566666666665555555555544
No 284
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=88.93 E-value=3.4 Score=35.27 Aligned_cols=65 Identities=15% Similarity=0.045 Sum_probs=41.0
Q ss_pred CCHHHHHHHHHHHHHcC---ChhHHHHHHHHHhc-cCCC-CchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369 555 PNEVIWSVFIAGCRRHG---NMELGFYAAEQLLK-LKPK-DCESYAMLLDIFVSAGRWEDVAVVKNLTRE 619 (758)
Q Consensus 555 p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~-~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 619 (758)
+...+--.+.++..+.. +..++..+++.+++ -.|. .......|+-.+.+.|+++.+.++.+...+
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 34444445566665544 45667777887776 3343 233445566777888888888888777765
No 285
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=88.85 E-value=14 Score=31.61 Aligned_cols=81 Identities=14% Similarity=0.144 Sum_probs=40.9
Q ss_pred hcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHH
Q 004369 435 KCGRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEM 514 (758)
Q Consensus 435 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 514 (758)
.||++......+-.+.. +..-...-+..+...|+-++-.++++++.+. -+|++.....+..||.+.|+..++.+++.+
T Consensus 68 ~C~NlKrVi~C~~~~n~-~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ 145 (161)
T PF09205_consen 68 KCGNLKRVIECYAKRNK-LSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKE 145 (161)
T ss_dssp G-S-THHHHHHHHHTT----HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred hhcchHHHHHHHHHhcc-hHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 44555544444443321 2222334455666667766666666666542 355666666666777777777777777766
Q ss_pred hhh
Q 004369 515 MQK 517 (758)
Q Consensus 515 ~~~ 517 (758)
+.+
T Consensus 146 ACe 148 (161)
T PF09205_consen 146 ACE 148 (161)
T ss_dssp HHH
T ss_pred HHH
Confidence 665
No 286
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=88.49 E-value=1.5 Score=43.43 Aligned_cols=90 Identities=14% Similarity=0.107 Sum_probs=40.7
Q ss_pred HHhccccHHHHHHHHHHhhhhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChh
Q 004369 498 ACSNAGMVYEALGYFEMMQKEYKIKP-VMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNME 574 (758)
Q Consensus 498 a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~ 574 (758)
-|.++|.+++|+..|..... +.| +...+..-..+|.+..++..|+.-.+.+ .+.- -...|.--+.+-...|+.+
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHH
Confidence 34555566666655554432 233 4445555555555555555444333322 1110 0111222222333345555
Q ss_pred HHHHHHHHHhccCCCC
Q 004369 575 LGFYAAEQLLKLKPKD 590 (758)
Q Consensus 575 ~a~~~~~~~~~~~p~~ 590 (758)
+|.+-++.+++++|++
T Consensus 183 EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 183 EAKKDCETVLALEPKN 198 (536)
T ss_pred HHHHhHHHHHhhCccc
Confidence 5555566666666553
No 287
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=88.46 E-value=34 Score=35.60 Aligned_cols=148 Identities=10% Similarity=-0.021 Sum_probs=72.7
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCC--HHH
Q 004369 453 TLISWTSMITGFANHSLSHQALQLFEDMLLAGVRP---NQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPV--MDH 527 (758)
Q Consensus 453 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~ 527 (758)
...+|..++..+.+.|+++.|...+.++...+..+ +......-....-..|+..+|...++...+. ....+ ...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~~ 223 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhcccccc
Confidence 34567777777888888888888887777643111 1122222233344556777777777666551 11111 111
Q ss_pred HHHHHHHHHHcCCHHHHHHH-HHHcCCCCCHHHHHHHHHHHHHc------CChhHHHHHHHHHhccCCCCchhHHHHHHH
Q 004369 528 YMCLIDMFVRLGCIEEAFDF-IKKMDFEPNEVIWSVFIAGCRRH------GNMELGFYAAEQLLKLKPKDCESYAMLLDI 600 (758)
Q Consensus 528 ~~~li~~~~~~g~~~~A~~~-~~~m~~~p~~~~~~~ll~~~~~~------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 600 (758)
...+...+.. ..+..... ........-...+..+..-+... ++.+.+...++.+.++.|.....+..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111100000 00000000 00000000011222333333333 778888999999999999887788777776
Q ss_pred hhh
Q 004369 601 FVS 603 (758)
Q Consensus 601 ~~~ 603 (758)
+.+
T Consensus 302 ~~~ 304 (352)
T PF02259_consen 302 NDK 304 (352)
T ss_pred HHH
Confidence 643
No 288
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=88.14 E-value=7.3 Score=39.30 Aligned_cols=64 Identities=17% Similarity=0.219 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHcCCCCC-H-HHHHHHHHHHhccc--cHHHHHHHHHHhhhhcCCCCCHHHHHHHHHH
Q 004369 470 SHQALQLFEDMLLAGVRPN-Q-VTFVGALAACSNAG--MVYEALGYFEMMQKEYKIKPVMDHYMCLIDM 534 (758)
Q Consensus 470 ~~~A~~~~~~m~~~g~~p~-~-~t~~~ll~a~~~~g--~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 534 (758)
.+.+..+|+.+.+.|+..+ . .....+|.-+.... .+..+.++++.+.+. |+++...+|..+.-+
T Consensus 159 ~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 159 AERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccccccccHHHHH
Confidence 3566777888888787665 3 23333443332222 245778888888774 888888887765543
No 289
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=87.84 E-value=1.3 Score=28.24 Aligned_cols=26 Identities=12% Similarity=0.232 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004369 456 SWTSMITGFANHSLSHQALQLFEDML 481 (758)
Q Consensus 456 ~~~~li~~~~~~g~~~~A~~~~~~m~ 481 (758)
+|+.|...|.+.|++++|+++|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35667777777777777777777744
No 290
>PRK10941 hypothetical protein; Provisional
Probab=87.55 E-value=3.3 Score=40.96 Aligned_cols=60 Identities=20% Similarity=0.096 Sum_probs=54.8
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369 560 WSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTRE 619 (758)
Q Consensus 560 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 619 (758)
.+.|-.++.+.++++.|.++.+.++.+.|+++.-+.--+-+|.+.|.+..|..=++...+
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 567778899999999999999999999999999899999999999999999998887765
No 291
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=87.05 E-value=1.1e+02 Score=39.64 Aligned_cols=64 Identities=11% Similarity=-0.015 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhhCCC
Q 004369 557 EVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREEKL 622 (758)
Q Consensus 557 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 622 (758)
..+|......++..|.++.|..+.-++.+..+ +..+...+...+..|+-..|..+.+...+...
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 45799999999999999999999888888774 47899999999999999999999998876543
No 292
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=87.02 E-value=61 Score=36.88 Aligned_cols=49 Identities=12% Similarity=0.188 Sum_probs=28.8
Q ss_pred cCChhHHHHHHHHHhccC---CCC-chhH-----HHHHHHhhhCCCchhHHHHHHHhh
Q 004369 570 HGNMELGFYAAEQLLKLK---PKD-CESY-----AMLLDIFVSAGRWEDVAVVKNLTR 618 (758)
Q Consensus 570 ~g~~~~a~~~~~~~~~~~---p~~-~~~~-----~~l~~~~~~~g~~~~a~~~~~~m~ 618 (758)
.|+.++..........+- |+. ...| ..+.+.|...|+.++|...+....
T Consensus 547 ~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 547 EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 677776655555554432 221 1222 245556778888888888776654
No 293
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=86.87 E-value=3.4 Score=29.14 Aligned_cols=51 Identities=14% Similarity=0.111 Sum_probs=37.8
Q ss_pred hHHHHHHHhhhCCCchhHHHHHHHhhhCCCCCCCceeEEEECCEEEEEecCCCCCCChHHHHHHHHHHHHHHHHcCc
Q 004369 593 SYAMLLDIFVSAGRWEDVAVVKNLTREEKLSETDDWSWIRIKDKVYSFKPNDGLHPQSAEIFKVLDELVEKAKCFGY 669 (758)
Q Consensus 593 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~m~~~g~ 669 (758)
....|+-++.+.|++++|.+..+.+.+ ..|+..+.......+.++|++.|.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~--------------------------~eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLE--------------------------IEPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--------------------------HTTS-HHHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHh--------------------------hCCCcHHHHHHHHHHHHHHhccCC
Confidence 356678889999999999999999886 456666666556667778887773
No 294
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.81 E-value=28 Score=33.08 Aligned_cols=62 Identities=8% Similarity=0.015 Sum_probs=35.3
Q ss_pred HHHHHHHHc-CCHHHHHHHHHHc-----CCCCCHHHHHHHHHH---HHHcCChhHHHHHHHHHhccCCCCc
Q 004369 530 CLIDMFVRL-GCIEEAFDFIKKM-----DFEPNEVIWSVFIAG---CRRHGNMELGFYAAEQLLKLKPKDC 591 (758)
Q Consensus 530 ~li~~~~~~-g~~~~A~~~~~~m-----~~~p~~~~~~~ll~~---~~~~g~~~~a~~~~~~~~~~~p~~~ 591 (758)
.+.+.|-.. .++++|+..++.. +-+.+...-..++.. -...+++.+|..+++++....-+++
T Consensus 118 ~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 118 EIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 344444433 4566666666665 222222222333332 3456789999999999987655543
No 295
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=85.73 E-value=18 Score=33.39 Aligned_cols=56 Identities=14% Similarity=0.062 Sum_probs=26.2
Q ss_pred HHhHHhhhHHhcCCHHHHHHHHHhcCCCCh------hHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004369 425 VGTALVNMYKKCGRIERASRVFVEMSTRTL------ISWTSMITGFANHSLSHQALQLFEDM 480 (758)
Q Consensus 425 ~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m 480 (758)
.+..+.+.|.+.|+++.|.+.|.++.+..+ ..+-.+|......|++..+.....+.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 344555555555555555555555443211 23334444444444444444444443
No 296
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=85.60 E-value=6.6 Score=40.95 Aligned_cols=120 Identities=18% Similarity=0.166 Sum_probs=69.3
Q ss_pred hcCCHHHHHH-HHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 004369 466 NHSLSHQALQ-LFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEA 544 (758)
Q Consensus 466 ~~g~~~~A~~-~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 544 (758)
..|+...|-+ ++.-+....-.|+.+...+.| ..+.|.++.+.+.+....+ -+.....+..+++...-+.|++++|
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHH
Confidence 3566555543 444444444456655555444 4567777777777766644 3334455666777777777777777
Q ss_pred HHHHHHc-CCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCC
Q 004369 545 FDFIKKM-DFE-PNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPK 589 (758)
Q Consensus 545 ~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 589 (758)
...-..| +-+ -+..+...-...-...|-++++...+++++.++|+
T Consensus 377 ~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 377 LSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 7776666 211 13333333334445556667777777777776654
No 297
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=84.93 E-value=28 Score=31.53 Aligned_cols=134 Identities=9% Similarity=0.074 Sum_probs=75.5
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCChh-HHHHHHHHHhhc-CChHHHHHHHhccC
Q 004369 160 IHVFLDMLEAGNYPTNVTLGTALTACSSLESIRLGKQIHAYVVKYQTEDDTS-VGNSLCSLYSTC-GSLNSAIKAFNRIR 237 (758)
Q Consensus 160 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~Li~~y~~~-g~~~~A~~~f~~~~ 237 (758)
++.++.+.+.++.|+...+..++..+.+.|....-.+ +++.++-+|.. +.-.|++.-.+. .-..-|...+.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 3455556667777887788888888877777554433 33344444433 333333332111 01222333343332
Q ss_pred CCCcchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHHHHHHHHHHHh
Q 004369 238 EKNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKL 305 (758)
Q Consensus 238 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 305 (758)
..+..++..+...|++-+|+++.+.... .+......++.+..+.+|...--.++......
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQYHK----VDSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHcCC----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2566777788889999999888877532 22233345666666666666655555555443
No 298
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.85 E-value=33 Score=31.76 Aligned_cols=90 Identities=11% Similarity=0.001 Sum_probs=59.3
Q ss_pred HHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHH-----HHHHHHHcCCHHHHHHHHHHcCCC-CCHHHHHHHHHHHHH
Q 004369 496 LAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMC-----LIDMFVRLGCIEEAFDFIKKMDFE-PNEVIWSVFIAGCRR 569 (758)
Q Consensus 496 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~-----li~~~~~~g~~~~A~~~~~~m~~~-p~~~~~~~ll~~~~~ 569 (758)
...+...+++++|...++..... |.-+.+.. |.......|.+|+|++.++...-+ -.......-.+.+..
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~ 171 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLA 171 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHH
Confidence 34566778888888887766531 32333333 345677888899999888875211 122223334567788
Q ss_pred cCChhHHHHHHHHHhccCCC
Q 004369 570 HGNMELGFYAAEQLLKLKPK 589 (758)
Q Consensus 570 ~g~~~~a~~~~~~~~~~~p~ 589 (758)
.|+.++|...|+++++.+++
T Consensus 172 kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 172 KGDKQEARAAYEKALESDAS 191 (207)
T ss_pred cCchHHHHHHHHHHHHccCC
Confidence 89999999999999888754
No 299
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=84.81 E-value=8.4 Score=38.86 Aligned_cols=61 Identities=16% Similarity=0.100 Sum_probs=36.4
Q ss_pred hHHHHHHHHhHhCCCCCC-H-HHHHHHHHHHhcccc--hHHHHHHHHHHHHcCCCChHHHHhHHh
Q 004369 370 TEALSIFSKLNSSGMKPD-L-YTFSSILTICSRLVA--LEQGEQIHALTLKTGFLSDVVVGTALV 430 (758)
Q Consensus 370 ~~A~~l~~~m~~~g~~p~-~-~t~~~ll~a~~~~~~--~~~a~~i~~~~~~~~~~~~~~~~~~Li 430 (758)
+.+...|+.+...|+..+ . ...+.+|..+..... ...+.++++.+.+.|++.....|..+.
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 456667777777776653 3 344444444433322 346677778888888777666665443
No 300
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=84.42 E-value=2.4 Score=26.35 Aligned_cols=27 Identities=11% Similarity=0.209 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004369 456 SWTSMITGFANHSLSHQALQLFEDMLL 482 (758)
Q Consensus 456 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 482 (758)
+|..+...|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 566677777777777777777777766
No 301
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=84.41 E-value=11 Score=30.33 Aligned_cols=87 Identities=14% Similarity=0.101 Sum_probs=62.1
Q ss_pred CcHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHH
Q 004369 89 SLSNAEIIHAHIVKTGSHQDFFVMTFLVNVYGKCGNMEEAQKVFDNLPRINVVSWTSLISGYVQNSQPELAIHVFLDMLE 168 (758)
Q Consensus 89 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 168 (758)
..++|..|-+.+...+ .....+.-.-+..+...|++++|..+.+.++.||...|-+|-.. +.|..+++..-+.+|..
T Consensus 20 cHqEA~tIAdwL~~~~-~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 20 CHQEANTIADWLHLKG-ESEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHh
Confidence 4677888887776554 22333444445677889999999999999999999999888764 66777777777777777
Q ss_pred cCCCCChhhHH
Q 004369 169 AGNYPTNVTLG 179 (758)
Q Consensus 169 ~g~~p~~~t~~ 179 (758)
.| .|...+|.
T Consensus 97 sg-~p~lq~Fa 106 (115)
T TIGR02508 97 SG-DPRLQTFV 106 (115)
T ss_pred CC-CHHHHHHH
Confidence 65 44444443
No 302
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=83.81 E-value=3.8 Score=36.48 Aligned_cols=70 Identities=16% Similarity=0.058 Sum_probs=32.8
Q ss_pred HcCCHHHHHHHHHHc-CCCCCHHHHHH-HHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCC
Q 004369 537 RLGCIEEAFDFIKKM-DFEPNEVIWSV-FIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGR 606 (758)
Q Consensus 537 ~~g~~~~A~~~~~~m-~~~p~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 606 (758)
+.++.+++..++..+ -.+|....... -..-+...|++.+|.++++.+.+-.|..+..-..++.++...|+
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence 444555555555555 33343222211 12233445555555555555555555544444444444444443
No 303
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=83.48 E-value=16 Score=33.60 Aligned_cols=95 Identities=11% Similarity=0.035 Sum_probs=68.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhccccHHHHHHHHHHhhhhcCC--CCCH----H
Q 004369 455 ISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQ--VTFVGALAACSNAGMVYEALGYFEMMQKEYKI--KPVM----D 526 (758)
Q Consensus 455 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~p~~----~ 526 (758)
..+..+..-|++.|+.++|++.|.++.+....|.. ..+..++..+...+++..+..+..++...... +++. .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 36777888999999999999999999987666664 35677888888899999998888877652111 1121 2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHc
Q 004369 527 HYMCLIDMFVRLGCIEEAFDFIKKM 551 (758)
Q Consensus 527 ~~~~li~~~~~~g~~~~A~~~~~~m 551 (758)
.|..|. +...+++.+|-+.|-..
T Consensus 117 ~~~gL~--~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGLA--NLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHH--HHHhchHHHHHHHHHcc
Confidence 233332 33568999998888776
No 304
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.31 E-value=17 Score=32.76 Aligned_cols=119 Identities=13% Similarity=0.105 Sum_probs=64.8
Q ss_pred hcCChHHHHHHHhccCCCCcchHHHHH-----HHHhhCCChhhHHHHHHHHHHCCCCCChh-hHHHHHHH--HcccCChH
Q 004369 222 TCGSLNSAIKAFNRIREKNVMSWTTVI-----GACGENGEAVQGLRFFSKMLSEGIQPNEF-TLTSISSV--CGTMLSLR 293 (758)
Q Consensus 222 ~~g~~~~A~~~f~~~~~~~~~~~~~li-----~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~--~~~~~~~~ 293 (758)
+.+..++|+.-|..+...+.-+|-.|. ...++.|+...|+..|.+.-.....|-.. -...+=.+ +...|.++
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~ 149 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD 149 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence 345556666666665554444444332 23455666666666666665543333332 11111111 23345555
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCC
Q 004369 294 VGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSHV 340 (758)
Q Consensus 294 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 340 (758)
......+-+-..+-+.-.....+|.-+-.|.|++.+|.+.|..+.+.
T Consensus 150 dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 150 DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 55444444433333333445566777778899999999999988663
No 305
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.51 E-value=48 Score=31.87 Aligned_cols=78 Identities=13% Similarity=0.121 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCC------CchhHHHHHHH
Q 004369 527 HYMCLIDMFVRLGCIEEAFDFIKKMDFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPK------DCESYAMLLDI 600 (758)
Q Consensus 527 ~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~ 600 (758)
.|+--..+|..+|..+-|-..+++.. -.....+.++|++++++.+.+-.. -...|...+++
T Consensus 93 l~eKAs~lY~E~GspdtAAmaleKAa-------------k~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~ 159 (308)
T KOG1585|consen 93 LYEKASELYVECGSPDTAAMALEKAA-------------KALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRV 159 (308)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHHH-------------HHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhH
Confidence 34444445555555554444444430 012344566777777777654221 12356667888
Q ss_pred hhhCCCchhHHHHHHHh
Q 004369 601 FVSAGRWEDVAVVKNLT 617 (758)
Q Consensus 601 ~~~~g~~~~a~~~~~~m 617 (758)
|.+..+++||...+.+-
T Consensus 160 lVrl~kf~Eaa~a~lKe 176 (308)
T KOG1585|consen 160 LVRLEKFTEAATAFLKE 176 (308)
T ss_pred hhhhHHhhHHHHHHHHh
Confidence 88888999888776653
No 306
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=82.19 E-value=6.4 Score=34.48 Aligned_cols=51 Identities=12% Similarity=0.034 Sum_probs=34.6
Q ss_pred cCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhhC
Q 004369 570 HGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREE 620 (758)
Q Consensus 570 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 620 (758)
.++.++++.++..+--+.|+.+..-..-++.+...|+|+||.++++...+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 566666666666666666776666666667777777777777776666554
No 307
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=81.93 E-value=9.6 Score=30.50 Aligned_cols=63 Identities=13% Similarity=0.177 Sum_probs=49.3
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHH
Q 004369 469 LSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLID 533 (758)
Q Consensus 469 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 533 (758)
+.-++.+-++.+....+.|+.....+.|.||.+.+++..|.++|+.++.+.+ .+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 4456666677777778999999999999999999999999999998875333 34556776664
No 308
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=81.84 E-value=3.3 Score=29.19 Aligned_cols=33 Identities=18% Similarity=0.316 Sum_probs=26.5
Q ss_pred HHHHHHHHcCChhHHHHHHHHHhccCCCCchhH
Q 004369 562 VFIAGCRRHGNMELGFYAAEQLLKLKPKDCESY 594 (758)
Q Consensus 562 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 594 (758)
.+.-++.+.|+++.|.+..+.+++++|+|..+-
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 466788999999999999999999999986543
No 309
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=81.42 E-value=55 Score=31.81 Aligned_cols=258 Identities=15% Similarity=0.141 Sum_probs=143.8
Q ss_pred CCHHHHHHHHccCCC--CCee-----echhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHh---CCC--CCCHHHHH
Q 004369 325 GLVDEAQKLFDGMSH--VNLV-----TWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNS---SGM--KPDLYTFS 392 (758)
Q Consensus 325 g~~~~A~~~~~~m~~--~~~~-----~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~---~g~--~p~~~t~~ 392 (758)
.+.++|..-|.++.+ +.-. +.-.||..+.+ .+++++.++.+.+|.. +.+ .-...+.+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~-----------l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN 109 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFR-----------LGNYKEMMERYKQLLTYIKSAVTRNYSEKSIN 109 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhc-----------cccHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 345566666655433 1111 22345666677 7888888888887753 111 22445677
Q ss_pred HHHHHHhcccchHHHHHHHHHHHHc-----CCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCC--------CC------
Q 004369 393 SILTICSRLVALEQGEQIHALTLKT-----GFLSDVVVGTALVNMYKKCGRIERASRVFVEMST--------RT------ 453 (758)
Q Consensus 393 ~ll~a~~~~~~~~~a~~i~~~~~~~-----~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~--------~~------ 453 (758)
+++.-.+...+.+.-..+++.-.+. +-..-..+-+.|...|...|.+.+-.+++.++.. .|
T Consensus 110 ~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQ 189 (440)
T KOG1464|consen 110 SILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQ 189 (440)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccch
Confidence 7777666666666655555433221 1111223445677778888888888888877651 11
Q ss_pred -hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh-----ccccHHHHHHHHHHhhhhcCC--CCC-
Q 004369 454 -LISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACS-----NAGMVYEALGYFEMMQKEYKI--KPV- 524 (758)
Q Consensus 454 -~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~-----~~g~~~~a~~~~~~~~~~~~~--~p~- 524 (758)
...|..=|..|....+-.+-..+|++...-.-.........+++-|. +.|.+++|..-|-++-+.|.- .|.
T Consensus 190 LLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRR 269 (440)
T KOG1464|consen 190 LLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRR 269 (440)
T ss_pred hhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcch
Confidence 24677778888888888888888887765322222333455666664 567888876544444443322 222
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHH--Hc-CC--CCCHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHH
Q 004369 525 --MDHYMCLIDMFVRLGCIEEAFDFIK--KM-DF--EPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAML 597 (758)
Q Consensus 525 --~~~~~~li~~~~~~g~~~~A~~~~~--~m-~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 597 (758)
.--|-.|.+++.+.|- .-|+ ++ |. .|.......|+.+|... +..+-+++++.-...--+||....++
T Consensus 270 ttCLKYLVLANMLmkS~i-----NPFDsQEAKPyKNdPEIlAMTnlv~aYQ~N-dI~eFE~Il~~~~~~IM~DpFIReh~ 343 (440)
T KOG1464|consen 270 TTCLKYLVLANMLMKSGI-----NPFDSQEAKPYKNDPEILAMTNLVAAYQNN-DIIEFERILKSNRSNIMDDPFIREHI 343 (440)
T ss_pred hHHHHHHHHHHHHHHcCC-----CCCcccccCCCCCCHHHHHHHHHHHHHhcc-cHHHHHHHHHhhhccccccHHHHHHH
Confidence 2336667778877762 1111 11 33 34556678888888654 44433333332222223455555444
Q ss_pred HH
Q 004369 598 LD 599 (758)
Q Consensus 598 ~~ 599 (758)
-+
T Consensus 344 Ed 345 (440)
T KOG1464|consen 344 ED 345 (440)
T ss_pred HH
Confidence 33
No 310
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=81.34 E-value=27 Score=28.24 Aligned_cols=86 Identities=15% Similarity=0.171 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004369 405 EQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQALQLFEDMLLAG 484 (758)
Q Consensus 405 ~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 484 (758)
++|..|-+.+...+-. ...+--.-+..+...|++++|..+.+....||+..|-+|-. .+.|..+++..-+.+|..+|
T Consensus 22 qEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 22 QEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 4444444444443311 22222223345667899999999999998999999987754 45677777777777777765
Q ss_pred CCCCHHHHHH
Q 004369 485 VRPNQVTFVG 494 (758)
Q Consensus 485 ~~p~~~t~~~ 494 (758)
.|...+|..
T Consensus 99 -~p~lq~Faa 107 (115)
T TIGR02508 99 -DPRLQTFVA 107 (115)
T ss_pred -CHHHHHHHH
Confidence 555555543
No 311
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.33 E-value=7.9 Score=38.24 Aligned_cols=102 Identities=16% Similarity=0.199 Sum_probs=70.6
Q ss_pred hCCCCchhHHHHHHHHhhcCCChHHHHHHHccCCC-CCc-----chHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChh
Q 004369 103 TGSHQDFFVMTFLVNVYGKCGNMEEAQKVFDNLPR-INV-----VSWTSLISGYVQNSQPELAIHVFLDMLEAGNYPTNV 176 (758)
Q Consensus 103 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~-~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 176 (758)
.|.+....+...++..-....+++++...+-++.. ++. .+-.+.++. +-.-++++++.++..=++.|+.||.+
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irl-llky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRL-LLKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHH-HHccChHHHHHHHhCcchhccccchh
Confidence 34445555556666666667788888887766552 111 111222332 23447889999998888899999999
Q ss_pred hHHHHHHHhcccCChHHHHHHHHHHHHhC
Q 004369 177 TLGTALTACSSLESIRLGKQIHAYVVKYQ 205 (758)
Q Consensus 177 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 205 (758)
++..+|..+.+.++...|.++.-.|+...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 99999999999999888888877776543
No 312
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=81.21 E-value=6.3 Score=38.97 Aligned_cols=57 Identities=18% Similarity=0.256 Sum_probs=27.9
Q ss_pred HHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhh
Q 004369 562 VFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTR 618 (758)
Q Consensus 562 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 618 (758)
.++..+...|+.+.+...++++++.+|-+...|..|..+|.+.|+...|+..++.+.
T Consensus 158 ~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 158 KLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 344444444444444555555555555444455555555555555555555444443
No 313
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=80.83 E-value=61 Score=32.02 Aligned_cols=59 Identities=12% Similarity=0.039 Sum_probs=51.8
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369 561 SVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTRE 619 (758)
Q Consensus 561 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 619 (758)
+.....|...|.+.+|.++.++++.++|-+...+-.|.+.|+..|+--+|.+-++.+.+
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 34456788999999999999999999999999999999999999998888887777754
No 314
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=80.53 E-value=81 Score=33.21 Aligned_cols=133 Identities=15% Similarity=0.171 Sum_probs=98.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHH-HHHH
Q 004369 454 LISWTSMITGFANHSLSHQALQLFEDMLLAG-VRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDH-YMCL 531 (758)
Q Consensus 454 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~-~~~l 531 (758)
...|...+..-.+..-.+.|..+|-+..+.| +.++...+++++.-++ .|+..-|..+|+.-...+ ||... -...
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f---~d~~~y~~ky 472 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF---PDSTLYKEKY 472 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC---CCchHHHHHH
Confidence 3567777777777777888899999998888 6677778888886554 577888888888765533 33333 3456
Q ss_pred HHHHHHcCCHHHHHHHHHHc--CCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCC
Q 004369 532 IDMFVRLGCIEEAFDFIKKM--DFEPN--EVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKD 590 (758)
Q Consensus 532 i~~~~~~g~~~~A~~~~~~m--~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 590 (758)
++-+.+-++-+.|..+|+.. .+..+ ..+|..++.--..-|++..+..+-+++.+.-|..
T Consensus 473 l~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 473 LLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 67778888888899998865 23333 5678888888888888888888888888888874
No 315
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=80.43 E-value=2.5 Score=26.11 Aligned_cols=28 Identities=18% Similarity=0.242 Sum_probs=24.4
Q ss_pred hhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369 592 ESYAMLLDIFVSAGRWEDVAVVKNLTRE 619 (758)
Q Consensus 592 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 619 (758)
..+..++.+|...|++++|.+.+++..+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 5688999999999999999999998875
No 316
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=80.05 E-value=84 Score=33.11 Aligned_cols=143 Identities=17% Similarity=0.237 Sum_probs=97.9
Q ss_pred HHHHhHHhhhHHhcCCHHHHHHHHHhcC-----CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHH
Q 004369 423 VVVGTALVNMYKKCGRIERASRVFVEMS-----TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTF-VGAL 496 (758)
Q Consensus 423 ~~~~~~Li~~y~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll 496 (758)
..++..+++.-.+..-++.|..+|-+.. .+++..++++|.-++. |+..-|..+|+--... -||...| .-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 4556667777777777888888887765 3466778888876664 6677788888765442 4554333 3445
Q ss_pred HHHhccccHHHHHHHHHHhhhhcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHc
Q 004369 497 AACSNAGMVYEALGYFEMMQKEYKIKPV--MDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEPNEVIWSVFIAGCRRH 570 (758)
Q Consensus 497 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~ 570 (758)
.-+...++-+.|..+|+....+ +..+ ...|..+|+-=..-|++..+..+=++| ..-|...+...+.+-|...
T Consensus 474 ~fLi~inde~naraLFetsv~r--~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~Sry~ik 548 (660)
T COG5107 474 LFLIRINDEENARALFETSVER--LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTSRYAIK 548 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH--HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHHHHhhh
Confidence 5667788888999999976652 3333 568899999888999999888887777 4445555555555555443
No 317
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=79.91 E-value=12 Score=39.20 Aligned_cols=129 Identities=19% Similarity=0.208 Sum_probs=83.9
Q ss_pred hcCCHHHHH-HHHHhcC--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHH
Q 004369 435 KCGRIERAS-RVFVEMS--TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGY 511 (758)
Q Consensus 435 ~~g~~~~A~-~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 511 (758)
..|++..|- ++|.-+. +.+++.-......+...|+++.+++.+...... +.....+...++......|++++|...
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~ 379 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALST 379 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHH
Confidence 457776664 4554444 223333333334467789999999998876553 455677888999999999999999999
Q ss_pred HHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHH
Q 004369 512 FEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAG 566 (758)
Q Consensus 512 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~ 566 (758)
-+.|..+ .++ +.+....-.-.--..|-++++...|++. .+.| ...-|-.+++.
T Consensus 380 a~~~l~~-eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~ 434 (831)
T PRK15180 380 AEMMLSN-EIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSS 434 (831)
T ss_pred HHHHhcc-ccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeecc
Confidence 9888763 332 2233322222334567889999999988 4443 44446666654
No 318
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.90 E-value=30 Score=37.62 Aligned_cols=148 Identities=16% Similarity=0.073 Sum_probs=100.3
Q ss_pred cCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccccHHHHHHHHHH
Q 004369 436 CGRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQV-TFVGALAACSNAGMVYEALGYFEM 514 (758)
Q Consensus 436 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~ 514 (758)
.|+++.|..++-.+++ ..-+.++.-+...|..++|+++ .+|.. -|... .+.|+++.|.++..+
T Consensus 599 rrd~~~a~~vLp~I~k---~~rt~va~Fle~~g~~e~AL~~---------s~D~d~rFela----l~lgrl~iA~~la~e 662 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIPK---EIRTKVAHFLESQGMKEQALEL---------STDPDQRFELA----LKLGRLDIAFDLAVE 662 (794)
T ss_pred hccccccccccccCch---hhhhhHHhHhhhccchHhhhhc---------CCChhhhhhhh----hhcCcHHHHHHHHHh
Confidence 5777777777766662 2344556666777777777763 44432 23333 367899999887665
Q ss_pred hhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhH
Q 004369 515 MQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKMDFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESY 594 (758)
Q Consensus 515 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 594 (758)
.. +..-|..|.++....|++..|.+.|.+.. -|.+|+-.+...|+.+.-..+.....+.+..|
T Consensus 663 ~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N---- 725 (794)
T KOG0276|consen 663 AN-------SEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNN---- 725 (794)
T ss_pred hc-------chHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccc----
Confidence 53 34678999999999999999999998752 35577777777888775555555554444443
Q ss_pred HHHHHHhhhCCCchhHHHHHHHh
Q 004369 595 AMLLDIFVSAGRWEDVAVVKNLT 617 (758)
Q Consensus 595 ~~l~~~~~~~g~~~~a~~~~~~m 617 (758)
.-..+|...|++++..+++..-
T Consensus 726 -~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 726 -LAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred -hHHHHHHHcCCHHHHHHHHHhc
Confidence 3345677889999888876543
No 319
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=79.70 E-value=5.6 Score=37.07 Aligned_cols=99 Identities=14% Similarity=0.144 Sum_probs=60.7
Q ss_pred ccccHHHHHHHHHHhhhhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCC-HHHHHHHHHHHHHcCChhHHH
Q 004369 501 NAGMVYEALGYFEMMQKEYKIKPV-MDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEPN-EVIWSVFIAGCRRHGNMELGF 577 (758)
Q Consensus 501 ~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~ 577 (758)
..|.+.-|+--|.+.. .+.|+ +.+||.|.--+...|+++.|.+.|+.. ...|. ..+...=.-++.--|+++.|.
T Consensus 77 SlGL~~LAR~DftQaL---ai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq 153 (297)
T COG4785 77 SLGLRALARNDFSQAL---AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQ 153 (297)
T ss_pred hhhHHHHHhhhhhhhh---hcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhH
Confidence 3455555555555543 45565 567777777777888888888888776 55552 333222223344457888888
Q ss_pred HHHHHHhccCCCCchhHHHHHHHhhhCC
Q 004369 578 YAAEQLLKLKPKDCESYAMLLDIFVSAG 605 (758)
Q Consensus 578 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g 605 (758)
+-+-+..+.+|+||. . -.|.|....
T Consensus 154 ~d~~~fYQ~D~~DPf--R-~LWLYl~E~ 178 (297)
T COG4785 154 DDLLAFYQDDPNDPF--R-SLWLYLNEQ 178 (297)
T ss_pred HHHHHHHhcCCCChH--H-HHHHHHHHh
Confidence 888888888887752 2 235554443
No 320
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=79.48 E-value=94 Score=33.35 Aligned_cols=160 Identities=11% Similarity=0.078 Sum_probs=102.1
Q ss_pred cchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 004369 241 VMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYL 320 (758)
Q Consensus 241 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 320 (758)
-...-+++..+.++..+.-...+-.+|..-| .+...|..++..+... ..+.--.+++.+++..+. |++....|+..
T Consensus 66 d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~ 141 (711)
T COG1747 66 DSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADK 141 (711)
T ss_pred chHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHH
Confidence 3355567777777777777777888887744 5667777778777776 555666777777766543 34444556666
Q ss_pred HHhcCCHHHHHHHHccCCCCCe---------eechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHh-CCCCCCHHH
Q 004369 321 YLKCGLVDEAQKLFDGMSHVNL---------VTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNS-SGMKPDLYT 390 (758)
Q Consensus 321 ~~~~g~~~~A~~~~~~m~~~~~---------~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~-~g~~p~~~t 390 (758)
|-+ ++.+.+...|.....+=+ ..|.-++.-- ..+.+..+.+..+.+. .|..--.+.
T Consensus 142 yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i-------------~dD~D~fl~l~~kiqt~lg~~~~~Vl 207 (711)
T COG1747 142 YEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI-------------GDDKDFFLRLQKKIQTKLGEGRGSVL 207 (711)
T ss_pred HHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc-------------cccHHHHHHHHHHHHHhhccchHHHH
Confidence 655 777777777766533111 1455444321 3455666666666655 344555566
Q ss_pred HHHHHHHHhcccchHHHHHHHHHHHHcC
Q 004369 391 FSSILTICSRLVALEQGEQIHALTLKTG 418 (758)
Q Consensus 391 ~~~ll~a~~~~~~~~~a~~i~~~~~~~~ 418 (758)
+.-+-.-|....+++++.++...+.+..
T Consensus 208 ~qdv~~~Ys~~eN~~eai~Ilk~il~~d 235 (711)
T COG1747 208 MQDVYKKYSENENWTEAIRILKHILEHD 235 (711)
T ss_pred HHHHHHHhccccCHHHHHHHHHHHhhhc
Confidence 6666677777888888888887776654
No 321
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=79.04 E-value=1.7 Score=38.59 Aligned_cols=85 Identities=12% Similarity=0.096 Sum_probs=63.5
Q ss_pred HHHHhhcCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHH
Q 004369 80 LLQECVNRKSLSNAEIIHAHIVKTGSHQDFFVMTFLVNVYGKCGNMEEAQKVFDNLPRINVVSWTSLISGYVQNSQPELA 159 (758)
Q Consensus 80 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 159 (758)
+++.+.+.+.+......++.+...+...+....+.++..|++.++.+...++++.... .-...++..+-+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 5667777788888888888888777667788999999999999888888888885443 3345667777777878787
Q ss_pred HHHHHHHH
Q 004369 160 IHVFLDML 167 (758)
Q Consensus 160 ~~~~~~m~ 167 (758)
.-++.++.
T Consensus 90 ~~Ly~~~~ 97 (143)
T PF00637_consen 90 VYLYSKLG 97 (143)
T ss_dssp HHHHHCCT
T ss_pred HHHHHHcc
Confidence 77777653
No 322
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=78.84 E-value=13 Score=30.15 Aligned_cols=61 Identities=13% Similarity=0.179 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHH
Q 004369 471 HQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLID 533 (758)
Q Consensus 471 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 533 (758)
-+...-++.+....+.|+.....+.|.||.+.+++..|.++|+.++.+.+ +....|..+++
T Consensus 27 we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 27 WELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 35555566666677899999999999999999999999999999887544 33347777764
No 323
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=78.41 E-value=10 Score=37.90 Aligned_cols=86 Identities=15% Similarity=0.088 Sum_probs=62.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcC
Q 004369 461 ITGFANHSLSHQALQLFEDMLLAGVRP-NQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLG 539 (758)
Q Consensus 461 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 539 (758)
.+-|.+.|.+++|+..|..-.. +.| |.+++..-..||.+...+..|..-...+... | ...+.+|.|.|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL-----d----~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL-----D----KLYVKAYSRRM 172 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh-----h----HHHHHHHHHHH
Confidence 3569999999999999998776 567 8999999999999999998888777666531 1 23455666655
Q ss_pred -------CHHHHHHHHHHc-CCCCCH
Q 004369 540 -------CIEEAFDFIKKM-DFEPNE 557 (758)
Q Consensus 540 -------~~~~A~~~~~~m-~~~p~~ 557 (758)
.++||.+-++.. .++|+.
T Consensus 173 ~AR~~Lg~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 173 QARESLGNNMEAKKDCETVLALEPKN 198 (536)
T ss_pred HHHHHHhhHHHHHHhHHHHHhhCccc
Confidence 455555544444 667763
No 324
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=77.86 E-value=11 Score=34.95 Aligned_cols=75 Identities=17% Similarity=0.162 Sum_probs=52.6
Q ss_pred HHcCCHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCC----CchhHHHHHHHhhhCCCchh
Q 004369 536 VRLGCIEEAFDFIKKMDFEP--NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPK----DCESYAMLLDIFVSAGRWED 609 (758)
Q Consensus 536 ~~~g~~~~A~~~~~~m~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~ 609 (758)
.+.|+ ++|.+.|-.+.-.| +....-.-+..|....|.+.++.++-+++++.+. |+..+..|+.+|.+.|+++.
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 34454 57777777772233 3344444555566677889999999999887532 57889999999999999887
Q ss_pred HH
Q 004369 610 VA 611 (758)
Q Consensus 610 a~ 611 (758)
|-
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 74
No 325
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=77.72 E-value=4.1 Score=24.01 Aligned_cols=30 Identities=17% Similarity=0.190 Sum_probs=17.4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhccCCC
Q 004369 560 WSVFIAGCRRHGNMELGFYAAEQLLKLKPK 589 (758)
Q Consensus 560 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 589 (758)
|..+...+...|+++.|...+++.++..|+
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 445555555566666666666666655553
No 326
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=77.23 E-value=1.8 Score=38.30 Aligned_cols=85 Identities=13% Similarity=0.187 Sum_probs=56.9
Q ss_pred HHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHhhcCChHHHHHHHhccCCCCcchHHHHHHHHhhCCChhhH
Q 004369 181 ALTACSSLESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGSLNSAIKAFNRIREKNVMSWTTVIGACGENGEAVQG 260 (758)
Q Consensus 181 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 260 (758)
++..+.+.+.......+++.+++.+...+....+.|+..|++.++.+...++++.... .-...++..+-+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 4555566666666667777777666666788888888899888887888888774332 3344566666677777777
Q ss_pred HHHHHHHH
Q 004369 261 LRFFSKML 268 (758)
Q Consensus 261 ~~l~~~m~ 268 (758)
.-++.++.
T Consensus 90 ~~Ly~~~~ 97 (143)
T PF00637_consen 90 VYLYSKLG 97 (143)
T ss_dssp HHHHHCCT
T ss_pred HHHHHHcc
Confidence 77766653
No 327
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=77.19 E-value=4 Score=42.82 Aligned_cols=86 Identities=13% Similarity=0.173 Sum_probs=65.3
Q ss_pred HHHHcCCHHHHHHHHHHc-CCCCCHHHHHHH-HHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHH
Q 004369 534 MFVRLGCIEEAFDFIKKM-DFEPNEVIWSVF-IAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVA 611 (758)
Q Consensus 534 ~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l-l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 611 (758)
-+.+.+.++.|..++.++ ...||-..|-+. ..++.+.+++..|..-+.++++++|.....|..-+.++.+.+++.+|.
T Consensus 13 ~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~ 92 (476)
T KOG0376|consen 13 EALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKAL 92 (476)
T ss_pred hhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHH
Confidence 344556777777777776 677765544333 367778888888998889999999888888888888888888888888
Q ss_pred HHHHHhhh
Q 004369 612 VVKNLTRE 619 (758)
Q Consensus 612 ~~~~~m~~ 619 (758)
..++.-..
T Consensus 93 ~~l~~~~~ 100 (476)
T KOG0376|consen 93 LDLEKVKK 100 (476)
T ss_pred HHHHHhhh
Confidence 88776543
No 328
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=76.94 E-value=3.7 Score=25.08 Aligned_cols=27 Identities=15% Similarity=0.210 Sum_probs=15.4
Q ss_pred HHHHHHHcCChhHHHHHHHHHhccCCC
Q 004369 563 FIAGCRRHGNMELGFYAAEQLLKLKPK 589 (758)
Q Consensus 563 ll~~~~~~g~~~~a~~~~~~~~~~~p~ 589 (758)
+..++.+.|+.++|...++++++..|+
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 444555556666666666666655554
No 329
>PRK11619 lytic murein transglycosylase; Provisional
Probab=76.56 E-value=1.5e+02 Score=33.96 Aligned_cols=125 Identities=10% Similarity=0.028 Sum_probs=69.2
Q ss_pred cCCHHHHHHHHHHHHHcC-CCCCHH--HHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHH
Q 004369 467 HSLSHQALQLFEDMLLAG-VRPNQV--TFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEE 543 (758)
Q Consensus 467 ~g~~~~A~~~~~~m~~~g-~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 543 (758)
..+.+.|..++.+..... +.+... ....+.......+...++...++..... ..+.....--+..-.+.++++.
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHccCHHH
Confidence 455688888888774432 333322 2333322222322255666666654321 1233444444555558888888
Q ss_pred HHHHHHHcCCC-CCHHHH-HHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHH
Q 004369 544 AFDFIKKMDFE-PNEVIW-SVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLL 598 (758)
Q Consensus 544 A~~~~~~m~~~-p~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 598 (758)
+...|..|+.. -+..-| -=+..+....|+.++|...++++.. +. ..|..|+
T Consensus 331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~--~~--~fYG~LA 383 (644)
T PRK11619 331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ--QR--GFYPMVA 383 (644)
T ss_pred HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc--CC--CcHHHHH
Confidence 88888888321 122222 2245565668899999988888743 22 3555554
No 330
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=76.53 E-value=7.2 Score=36.45 Aligned_cols=63 Identities=13% Similarity=0.132 Sum_probs=46.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCc
Q 004369 529 MCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDC 591 (758)
Q Consensus 529 ~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 591 (758)
+..+..+.+.+++.+|+...+.- .-+| |...-..|+..++..|++++|..-++-+-++.|++.
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 34456677788888888776654 5566 566667778888888888888888888878877753
No 331
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=76.51 E-value=3.9 Score=23.70 Aligned_cols=24 Identities=8% Similarity=0.127 Sum_probs=18.3
Q ss_pred hhHHHHHHHhhhCCCchhHHHHHH
Q 004369 592 ESYAMLLDIFVSAGRWEDVAVVKN 615 (758)
Q Consensus 592 ~~~~~l~~~~~~~g~~~~a~~~~~ 615 (758)
.....|+.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 456678888888888888887654
No 332
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=76.31 E-value=8.8 Score=34.88 Aligned_cols=46 Identities=15% Similarity=0.128 Sum_probs=31.9
Q ss_pred hhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCC----chhHHHHHHHhh
Q 004369 573 MELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGR----WEDVAVVKNLTR 618 (758)
Q Consensus 573 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~----~~~a~~~~~~m~ 618 (758)
+++|..-+++++.++|+...++..++++|...|. -.+|..+|++..
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~ 100 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKAT 100 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence 4566777888889999999999999999987764 334444444443
No 333
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=76.19 E-value=96 Score=34.76 Aligned_cols=116 Identities=11% Similarity=0.036 Sum_probs=54.9
Q ss_pred cHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHcC--CCCCHHHHHHHHHHHH--HcCChhHHHH
Q 004369 504 MVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVR-LGCIEEAFDFIKKMD--FEPNEVIWSVFIAGCR--RHGNMELGFY 578 (758)
Q Consensus 504 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~--~~g~~~~a~~ 578 (758)
+.+.|..++....+ .| .|+....-......+. ..+...|.++|.... -.++...+.++....- ...+.+.|..
T Consensus 308 d~~~A~~~~~~aA~-~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~ 385 (552)
T KOG1550|consen 308 DYEKALKLYTKAAE-LG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFA 385 (552)
T ss_pred cHHHHHHHHHHHHh-cC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHH
Confidence 44556666665544 13 2333332222222222 124556666666651 1222222222222111 2236677777
Q ss_pred HHHHHhccCCCCchhHHHHHHHhhhC-CCchhHHHHHHHhhhCCCC
Q 004369 579 AAEQLLKLKPKDCESYAMLLDIFVSA-GRWEDVAVVKNLTREEKLS 623 (758)
Q Consensus 579 ~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~~~~ 623 (758)
.++++-+.++ +.+...+...+.-. ++++.+.-....+.+.|.+
T Consensus 386 ~~k~aA~~g~--~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 386 YYKKAAEKGN--PSAAYLLGAFYEYGVGRYDTALALYLYLAELGYE 429 (552)
T ss_pred HHHHHHHccC--hhhHHHHHHHHHHccccccHHHHHHHHHHHhhhh
Confidence 7777777763 23333333333222 7777777777766665543
No 334
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=75.72 E-value=29 Score=30.52 Aligned_cols=84 Identities=15% Similarity=0.225 Sum_probs=48.1
Q ss_pred hccccHHHHHHHHHHhhhhcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHcCCCC-CHHHHHHHHHHHHH-cCChhHH
Q 004369 500 SNAGMVYEALGYFEMMQKEYKIKPVM-DHYMCLIDMFVRLGCIEEAFDFIKKMDFEP-NEVIWSVFIAGCRR-HGNMELG 576 (758)
Q Consensus 500 ~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~p-~~~~~~~ll~~~~~-~g~~~~a 576 (758)
...++.+++..+++.|.- +.|+. +.-..-+..+.+.|+++||..+|++..-.+ ....-..|+.-|.. .||.+ =
T Consensus 21 L~~~d~~D~e~lLdALrv---LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~-W 96 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRV---LRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAE-W 96 (153)
T ss_pred HhcCCHHHHHHHHHHHHH---hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChH-H
Confidence 457888888888888854 44442 222233455678889999999998883332 33333444444444 33332 2
Q ss_pred HHHHHHHhccC
Q 004369 577 FYAAEQLLKLK 587 (758)
Q Consensus 577 ~~~~~~~~~~~ 587 (758)
......+++.+
T Consensus 97 r~~A~~~le~~ 107 (153)
T TIGR02561 97 HVHADEVLARD 107 (153)
T ss_pred HHHHHHHHHhC
Confidence 33444444443
No 335
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.70 E-value=21 Score=35.46 Aligned_cols=101 Identities=14% Similarity=0.097 Sum_probs=70.4
Q ss_pred CCCCChhHHHHHHHHHhhcCChHHHHHHHhccCC-CCc-----chHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhh
Q 004369 205 QTEDDTSVGNSLCSLYSTCGSLNSAIKAFNRIRE-KNV-----MSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFT 278 (758)
Q Consensus 205 g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~-~~~-----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 278 (758)
|......+...++..-....+++++...+-++.. |+. .+-.+.++.+ -.-++++++.++..=..-|+-||.+|
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH-HccChHHHHHHHhCcchhccccchhh
Confidence 4444555556666666666778888877766653 221 1112233333 33467788888888888899999999
Q ss_pred HHHHHHHHcccCChHHHHHHHHHHHHhC
Q 004369 279 LTSISSVCGTMLSLRVGAQVHSLGIKLG 306 (758)
Q Consensus 279 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g 306 (758)
++.+|..+.+.++...|.++.-.|+...
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 9999999999999998888888777654
No 336
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=75.63 E-value=25 Score=28.29 Aligned_cols=62 Identities=11% Similarity=0.033 Sum_probs=45.8
Q ss_pred chhHHHHHHHHHHHcCCCCCcchHHHHHHHhhcCCCcHHHHHHHHHHH-HhCCCCchhHHHHHHH
Q 004369 54 VRSLGFQEALSVLTEGPKVQTSSYVSLLQECVNRKSLSNAEIIHAHIV-KTGSHQDFFVMTFLVN 117 (758)
Q Consensus 54 ~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~g~~~~~~~~~~li~ 117 (758)
+.-+.-.-+..+...+.-|++....+.|++|.+.+++..|.++++-+. +.|. +..+|..++.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 333455556666677888999999999999999999999999999776 4442 3445665554
No 337
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=75.50 E-value=4.3 Score=25.43 Aligned_cols=30 Identities=23% Similarity=0.267 Sum_probs=19.3
Q ss_pred HHHHhCCCCchhHHHHHHHHhhcCCChHHHH
Q 004369 99 HIVKTGSHQDFFVMTFLVNVYGKCGNMEEAQ 129 (758)
Q Consensus 99 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 129 (758)
+.++.. +.+...|+.|...|...|++++|+
T Consensus 4 kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 4 KAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 344443 556677777777777777777765
No 338
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=75.18 E-value=43 Score=32.15 Aligned_cols=55 Identities=7% Similarity=-0.001 Sum_probs=46.4
Q ss_pred HHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369 565 AGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTRE 619 (758)
Q Consensus 565 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 619 (758)
..+...|++-++++....++...|.+..+|..-+.+.+..=+.++|..-+....+
T Consensus 238 QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 238 QCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred HHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 3445678999999999999999999999999999988888788888877777665
No 339
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=74.94 E-value=38 Score=35.41 Aligned_cols=95 Identities=18% Similarity=0.325 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHc----------CC-----------------CC-CHHHHHHH---HHHHHHcCCh
Q 004369 525 MDHYMCLIDMFVRLGCIEEAFDFIKKM----------DF-----------------EP-NEVIWSVF---IAGCRRHGNM 573 (758)
Q Consensus 525 ~~~~~~li~~~~~~g~~~~A~~~~~~m----------~~-----------------~p-~~~~~~~l---l~~~~~~g~~ 573 (758)
+.++-.+.+.+.+.|+.+.|.+++++. .+ .| |...|.+| +..+.+.|-+
T Consensus 40 idtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~ 119 (360)
T PF04910_consen 40 IDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCW 119 (360)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCcH
Confidence 344555556666666666666665554 11 12 44445444 4567788999
Q ss_pred hHHHHHHHHHhccCCC-CchhHHHHHHHhh-hCCCchhHHHHHHHhhh
Q 004369 574 ELGFYAAEQLLKLKPK-DCESYAMLLDIFV-SAGRWEDVAVVKNLTRE 619 (758)
Q Consensus 574 ~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~~ 619 (758)
..|.+..+-++.++|. ||-.-...++.|+ ++++++--.++.+....
T Consensus 120 rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 120 RTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 9999999999999998 9888888889886 66888877777776544
No 340
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=74.78 E-value=5.4 Score=25.94 Aligned_cols=26 Identities=19% Similarity=0.212 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHh
Q 004369 559 IWSVFIAGCRRHGNMELGFYAAEQLL 584 (758)
Q Consensus 559 ~~~~ll~~~~~~g~~~~a~~~~~~~~ 584 (758)
+++.|...|...|++++|+.++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 34444444444455555554444444
No 341
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=74.65 E-value=6.9 Score=25.42 Aligned_cols=28 Identities=18% Similarity=0.331 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004369 455 ISWTSMITGFANHSLSHQALQLFEDMLL 482 (758)
Q Consensus 455 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 482 (758)
.+++.|...|...|++++|+.++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3566677777777777777777776654
No 342
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=73.50 E-value=1.6e+02 Score=33.00 Aligned_cols=244 Identities=11% Similarity=0.037 Sum_probs=129.9
Q ss_pred CCChhHHHHHHHHhHh-------CCCCCCHHHHHHHHHHHhccc-----chHHHHHHHHHHHHcCCCChHHHHhHHhhhH
Q 004369 366 HNGGTEALSIFSKLNS-------SGMKPDLYTFSSILTICSRLV-----ALEQGEQIHALTLKTGFLSDVVVGTALVNMY 433 (758)
Q Consensus 366 ~g~~~~A~~l~~~m~~-------~g~~p~~~t~~~ll~a~~~~~-----~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y 433 (758)
..+.+.|+..|+.+.+ .| +......+-.+|.+.. +.+.|..++....+.|.+ +....-..+...
T Consensus 262 ~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~ 337 (552)
T KOG1550|consen 262 TQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYET 337 (552)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHc
Confidence 7788888888888866 44 2223444445554432 566788888888887744 333322222222
Q ss_pred Hh-cCCHHHHHHHHHhcCCC-ChhHHHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHH
Q 004369 434 KK-CGRIERASRVFVEMSTR-TLISWTSMITGFA----NHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYE 507 (758)
Q Consensus 434 ~~-~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 507 (758)
.. ..+...|.+.|...... .+.+.-.+...|. ...+...|..++++.-+.| .|-..--...+..+.. +.++.
T Consensus 338 g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~ 415 (552)
T KOG1550|consen 338 GTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDT 415 (552)
T ss_pred CCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccH
Confidence 22 34677888888876643 3333222222222 2346888888888888877 4443333334444544 66666
Q ss_pred HHHHHHHhhhhcCCCCCHHHHHHHHHHH-----HH--cCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc----CChhHH
Q 004369 508 ALGYFEMMQKEYKIKPVMDHYMCLIDMF-----VR--LGCIEEAFDFIKKMDFEPNEVIWSVFIAGCRRH----GNMELG 576 (758)
Q Consensus 508 a~~~~~~~~~~~~~~p~~~~~~~li~~~-----~~--~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~----g~~~~a 576 (758)
+.-.+..+.+ .|.+-....-..+.+.. .+ ..+.+.+...+.+...+-+......|...|..- .+.+.|
T Consensus 416 ~~~~~~~~a~-~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a 494 (552)
T KOG1550|consen 416 ALALYLYLAE-LGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKA 494 (552)
T ss_pred HHHHHHHHHH-hhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHH
Confidence 6665555544 23322211111111111 11 124555666666653333444444454444332 256667
Q ss_pred HHHHHHHhccCCCCchhHHHHHHHhhhC-C--CchhHHHHHHHhhh
Q 004369 577 FYAAEQLLKLKPKDCESYAMLLDIFVSA-G--RWEDVAVVKNLTRE 619 (758)
Q Consensus 577 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g--~~~~a~~~~~~m~~ 619 (758)
...+.++-+.. +.....|+.++-.. | .+..|.+++....+
T Consensus 495 ~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~ 537 (552)
T KOG1550|consen 495 AAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASE 537 (552)
T ss_pred HHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHh
Confidence 66666666555 45555666665332 1 25667777766654
No 343
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=73.27 E-value=6 Score=24.39 Aligned_cols=28 Identities=25% Similarity=0.293 Sum_probs=25.2
Q ss_pred hhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369 592 ESYAMLLDIFVSAGRWEDVAVVKNLTRE 619 (758)
Q Consensus 592 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 619 (758)
.+|..++.+|...|++++|.+.+++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4688999999999999999999998765
No 344
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=72.67 E-value=40 Score=31.24 Aligned_cols=59 Identities=15% Similarity=0.204 Sum_probs=34.1
Q ss_pred HHHHHHcCCHHHHHHHHHHc-CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCC
Q 004369 532 IDMFVRLGCIEEAFDFIKKM-DFEPN-EVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKD 590 (758)
Q Consensus 532 i~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 590 (758)
.-++.+.+.++.|++--.+. .+.|. .....--..+|.+...++.|+.-|+++++.+|..
T Consensus 141 aaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 141 AAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSR 201 (271)
T ss_pred HHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcch
Confidence 34445555555555544443 33332 1222222345666777888888888888888875
No 345
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=72.22 E-value=14 Score=35.33 Aligned_cols=64 Identities=9% Similarity=0.018 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHcCChhHH-------HHHHHHHhccC--CC----CchhHHHHHHHhhhCCCchhHHHHHHHhhhC
Q 004369 557 EVIWSVFIAGCRRHGNMELG-------FYAAEQLLKLK--PK----DCESYAMLLDIFVSAGRWEDVAVVKNLTREE 620 (758)
Q Consensus 557 ~~~~~~ll~~~~~~g~~~~a-------~~~~~~~~~~~--p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 620 (758)
..++.-+.+.|+..|+.+.. .+.++++++.+ |. +......++.++.+.|+.++|.+.+..+...
T Consensus 118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 34566677777777775444 44445554433 22 2456778899999999999999999988753
No 346
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=71.71 E-value=2.1 Score=42.74 Aligned_cols=87 Identities=13% Similarity=0.211 Sum_probs=53.1
Q ss_pred cCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHH
Q 004369 538 LGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKN 615 (758)
Q Consensus 538 ~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 615 (758)
.|.+++|++.|... ...| ....+..=.+++.+.++...|++-+..+++++|+....|-.-+.+....|.|++|.+.+.
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~ 206 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLA 206 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHH
Confidence 45566666666555 4444 233344444555666666666676777777777766666666666666677777777766
Q ss_pred HhhhCCCCC
Q 004369 616 LTREEKLSE 624 (758)
Q Consensus 616 ~m~~~~~~~ 624 (758)
...+.+...
T Consensus 207 ~a~kld~dE 215 (377)
T KOG1308|consen 207 LACKLDYDE 215 (377)
T ss_pred HHHhccccH
Confidence 666655543
No 347
>PRK12798 chemotaxis protein; Reviewed
Probab=71.32 E-value=1.4e+02 Score=31.40 Aligned_cols=179 Identities=17% Similarity=0.220 Sum_probs=117.0
Q ss_pred cCCHHHHHHHHHhcCCC----ChhHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHhccccHH
Q 004369 436 CGRIERASRVFVEMSTR----TLISWTSMITGFA-NHSLSHQALQLFEDMLLAGVRPNQV----TFVGALAACSNAGMVY 506 (758)
Q Consensus 436 ~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~a~~~~g~~~ 506 (758)
.|+.++|.+.|..+... .+..|-+|+.+-. ...++.+|+++|++..- ..|... ...--+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 69999999999998743 4456777777654 45679999999999876 456533 2333344567889999
Q ss_pred HHHHHHHHhhhhcCCCCCHHHHHH-HHHHHHHc---CCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 004369 507 EALGYFEMMQKEYKIKPVMDHYMC-LIDMFVRL---GCIEEAFDFIKKMDFEPNEVIWSVFIAGCRRHGNMELGFYAAEQ 582 (758)
Q Consensus 507 ~a~~~~~~~~~~~~~~p~~~~~~~-li~~~~~~---g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 582 (758)
++..+-..-...|...|=...|.. ++..+.+. -..++-.+++..|.-.--..+|..+...-...|+.+.|..+.++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 988777666666666665443332 33333333 34455555666663222356788888889999999999999999
Q ss_pred HhccCCCCchhHHHHHHHhhh-----CCCchhHHHHHHHh
Q 004369 583 LLKLKPKDCESYAMLLDIFVS-----AGRWEDVAVVKNLT 617 (758)
Q Consensus 583 ~~~~~p~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~m 617 (758)
++.+... ...-...+..|.. ....+++.+.+..+
T Consensus 283 A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I 321 (421)
T PRK12798 283 ALKLADP-DSADAARARLYRGAALVASDDAESALEELSQI 321 (421)
T ss_pred HHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcC
Confidence 9998743 2333334444432 23455555555444
No 348
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=71.32 E-value=1.5e+02 Score=31.86 Aligned_cols=168 Identities=13% Similarity=0.094 Sum_probs=92.5
Q ss_pred CChHHHHhHHhhhHHhcCCHHHHHHHHHhcC--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004369 420 LSDVVVGTALVNMYKKCGRIERASRVFVEMS--TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALA 497 (758)
Q Consensus 420 ~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 497 (758)
+.|....-++++.++..-+.+-.+.+-.+|. ..+-..|-.++..|.++ ..++-..+++++.+. .-|.+.+..-+.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~--dfnDvv~~ReLa 139 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEY--DFNDVVIGRELA 139 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHh--cchhHHHHHHHH
Confidence 3344445556666666666666666655555 33445666777777776 456667777777663 334444444444
Q ss_pred HHhccccHHHHHHHHHHhhhhcCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHc----CCCCCHHHHHHHHHHH
Q 004369 498 ACSNAGMVYEALGYFEMMQKEYKIKPV------MDHYMCLIDMFVRLGCIEEAFDFIKKM----DFEPNEVIWSVFIAGC 567 (758)
Q Consensus 498 a~~~~g~~~~a~~~~~~~~~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~ll~~~ 567 (758)
-+...++.+.+..+|..+.. .+-|. .+.|..|+..- ..+.+.-+.+..+. +..--.+.+.-+-.-|
T Consensus 140 ~~yEkik~sk~a~~f~Ka~y--rfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 140 DKYEKIKKSKAAEFFGKALY--RFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHhchhhHHHHHHHHHH--HhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 44444667777777776654 23331 23444444322 22344444444444 3222334444555556
Q ss_pred HHcCChhHHHHHHHHHhccCCCCchhH
Q 004369 568 RRHGNMELGFYAAEQLLKLKPKDCESY 594 (758)
Q Consensus 568 ~~~g~~~~a~~~~~~~~~~~p~~~~~~ 594 (758)
....|+.+|.++...+++.+..|..+.
T Consensus 216 s~~eN~~eai~Ilk~il~~d~k~~~ar 242 (711)
T COG1747 216 SENENWTEAIRILKHILEHDEKDVWAR 242 (711)
T ss_pred ccccCHHHHHHHHHHHhhhcchhhhHH
Confidence 666777777777777777665544433
No 349
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=71.24 E-value=45 Score=33.03 Aligned_cols=109 Identities=11% Similarity=0.173 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHhc-c-ccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004369 470 SHQALQLFEDMLL-AGVRPNQVTFVGALAACSN-A-GMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFD 546 (758)
Q Consensus 470 ~~~A~~~~~~m~~-~g~~p~~~t~~~ll~a~~~-~-g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 546 (758)
..+|+.+|+.... ..+--|..+...++..... . .....-.++.+.+...++-.++..+..++++.++..+++.+-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 3455555542111 1233344444444444332 1 12223334444454555667777777888888888888888888
Q ss_pred HHHHc--CCCC--CHHHHHHHHHHHHHcCChhHHHH
Q 004369 547 FIKKM--DFEP--NEVIWSVFIAGCRRHGNMELGFY 578 (758)
Q Consensus 547 ~~~~m--~~~p--~~~~~~~ll~~~~~~g~~~~a~~ 578 (758)
+++.. ...| |...|..++..-...||......
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~k 259 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRK 259 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHH
Confidence 88776 2123 66678888888777777554333
No 350
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=70.90 E-value=52 Score=31.93 Aligned_cols=183 Identities=12% Similarity=0.080 Sum_probs=110.5
Q ss_pred cCCHHHHHHHHHhcCC----C---ChhHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCCC--HHHHHHHHHHHhccc
Q 004369 436 CGRIERASRVFVEMST----R---TLISWTSMITGFANHSLSHQALQLFEDMLL---AGVRPN--QVTFVGALAACSNAG 503 (758)
Q Consensus 436 ~g~~~~A~~~~~~~~~----~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~--~~t~~~ll~a~~~~g 503 (758)
...+++|..-|++..+ + .......||..+.+.|++++.++.|++|+. +.+.-| ..+.++++.-.+.+.
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 4467778877777542 2 234455678888899999999999888864 223322 556777777666666
Q ss_pred cHHHHHHHHHHhhhhc----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc--CCC-----CC-------HHHHHHHHH
Q 004369 504 MVYEALGYFEMMQKEY----KIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM--DFE-----PN-------EVIWSVFIA 565 (758)
Q Consensus 504 ~~~~a~~~~~~~~~~~----~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~-----p~-------~~~~~~ll~ 565 (758)
+.+--.++++.-.+.. +-..--.+-..|...|...|.+.+-.+++++. .++ .| ..+|..=+.
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 5555555444332211 11111223345677777777777777777766 111 11 224555667
Q ss_pred HHHHcCChhHHHHHHHHHhccCCC--CchhH----HHHHHHhhhCCCchhHHH-HHHHhh
Q 004369 566 GCRRHGNMELGFYAAEQLLKLKPK--DCESY----AMLLDIFVSAGRWEDVAV-VKNLTR 618 (758)
Q Consensus 566 ~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~----~~l~~~~~~~g~~~~a~~-~~~~m~ 618 (758)
.|...++-..-..++++++..... .|... .+=+.+..+.|+|++|.. +|+..+
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFK 259 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFK 259 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHh
Confidence 777888888888899998876522 22222 122445678889998864 344443
No 351
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=70.81 E-value=21 Score=32.49 Aligned_cols=44 Identities=11% Similarity=0.115 Sum_probs=28.2
Q ss_pred hhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhhCCCC
Q 004369 573 MELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREEKLS 623 (758)
Q Consensus 573 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 623 (758)
+++|...|+++.+.+|++. .|..-..+. ++|-+++.++.+.++.
T Consensus 96 F~kA~~~FqkAv~~~P~ne-~Y~ksLe~~------~kap~lh~e~~~~~~~ 139 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNNE-LYRKSLEMA------AKAPELHMEIHKQGLG 139 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-H-HHHHHHHHH------HTHHHHHHHHHHSSS-
T ss_pred HHHHHHHHHHHHhcCCCcH-HHHHHHHHH------HhhHHHHHHHHHHHhh
Confidence 6778888889999999984 444444444 3466777777766654
No 352
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=70.34 E-value=23 Score=28.80 Aligned_cols=48 Identities=21% Similarity=0.313 Sum_probs=32.6
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHH
Q 004369 550 KMDFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAML 597 (758)
Q Consensus 550 ~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 597 (758)
.+.+-|++.+..+.+.+|++.+|+..|.++++-+...-.+....|-.+
T Consensus 38 ~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~ 85 (108)
T PF02284_consen 38 GYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYI 85 (108)
T ss_dssp TSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHH
T ss_pred ccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHH
Confidence 346779999999999999999999999999988765443333355544
No 353
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=68.48 E-value=1.9e+02 Score=31.82 Aligned_cols=136 Identities=7% Similarity=0.025 Sum_probs=68.4
Q ss_pred HHHHHHHHHhhcCChHHHHHHHhccCC--CCcc-hHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHH-c
Q 004369 212 VGNSLCSLYSTCGSLNSAIKAFNRIRE--KNVM-SWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVC-G 287 (758)
Q Consensus 212 ~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~-~ 287 (758)
.++.||.--....+.+.++.+++.+.. |... -|-....-=.+.|..+.+..+|++-+. |++-...-+...+..+ .
T Consensus 47 ~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n 125 (577)
T KOG1258|consen 47 AWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKN 125 (577)
T ss_pred chHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhc
Confidence 344445443333445566666666654 3322 233444444556777777777777654 3444444444444433 2
Q ss_pred ccCChHHHHHHHHHHHHh-CCC-CchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCeeechhH
Q 004369 288 TMLSLRVGAQVHSLGIKL-GYA-SNLRVRNSIMYLYLKCGLVDEAQKLFDGMSHVNLVTWNAM 348 (758)
Q Consensus 288 ~~~~~~~a~~~~~~~~~~-g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~l 348 (758)
..|+.+.....|+.+... |.. .....|...|..-..+++......+++++.+-....++..
T Consensus 126 ~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~ 188 (577)
T KOG1258|consen 126 NNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRH 188 (577)
T ss_pred cCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHH
Confidence 345666666666666543 211 1233444555554555556666666665554333333333
No 354
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=68.13 E-value=5.3 Score=24.30 Aligned_cols=28 Identities=7% Similarity=0.082 Sum_probs=24.6
Q ss_pred hHHHHHHHhhhCCCchhHHHHHHHhhhC
Q 004369 593 SYAMLLDIFVSAGRWEDVAVVKNLTREE 620 (758)
Q Consensus 593 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 620 (758)
++..++.+|.+.|++++|.+.++.+.++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4677899999999999999999998764
No 355
>PHA02875 ankyrin repeat protein; Provisional
Probab=66.80 E-value=1.8e+02 Score=31.00 Aligned_cols=200 Identities=10% Similarity=0.021 Sum_probs=96.8
Q ss_pred HHHHHHHHcCCCCCcch--HHHHHHHhhcCCCcHHHHHHHHHHHHhCCCCchh--HHHHHHHHhhcCCChHHHHHHHccC
Q 004369 60 QEALSVLTEGPKVQTSS--YVSLLQECVNRKSLSNAEIIHAHIVKTGSHQDFF--VMTFLVNVYGKCGNMEEAQKVFDNL 135 (758)
Q Consensus 60 ~~~~~~~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~f~~~ 135 (758)
+.++.+++.|..|+... -.+.+..++..|+.+ +.+.+++.|..++.. ....-+...++.|+.+.+..+++.-
T Consensus 16 ~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~ 91 (413)
T PHA02875 16 DIARRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLG 91 (413)
T ss_pred HHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcC
Confidence 34555666777665432 233455555667754 445555666544422 1123344556778888888887654
Q ss_pred CCC----CcchHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhh--HHHHHHHhcccCChHHHHHHHHHHHHhCCCCC
Q 004369 136 PRI----NVVSWTSLISGYVQNSQPELAIHVFLDMLEAGNYPTNVT--LGTALTACSSLESIRLGKQIHAYVVKYQTEDD 209 (758)
Q Consensus 136 ~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 209 (758)
... +..-+ +.+...+..|+. ++++.+.+.|..|+... -.+.+...+..|+.+..+. +++.|..++
T Consensus 92 ~~~~~~~~~~g~-tpL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~----Ll~~g~~~~ 162 (413)
T PHA02875 92 KFADDVFYKDGM-TPLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIEL----LIDHKACLD 162 (413)
T ss_pred CcccccccCCCC-CHHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHH----HHhcCCCCC
Confidence 321 11112 233333455554 34455555666554322 1123333445566554433 344454333
Q ss_pred hh--HHHHHHHHHhhcCChHHHHHHHhccCCCCcch---HHHHHHHHhhCCChhhHHHHHHHHHHCCCCCCh
Q 004369 210 TS--VGNSLCSLYSTCGSLNSAIKAFNRIREKNVMS---WTTVIGACGENGEAVQGLRFFSKMLSEGIQPNE 276 (758)
Q Consensus 210 ~~--~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~---~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 276 (758)
.. ...+-+...+..|+.+-+..+++.-..++... ..+++...+..|+.+ +.+.+.+.|..++.
T Consensus 163 ~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad~n~ 230 (413)
T PHA02875 163 IEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGADCNI 230 (413)
T ss_pred CCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcCcch
Confidence 21 12233444555677766666666544433221 123333334445443 34444555655553
No 356
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=65.80 E-value=1.8e+02 Score=30.65 Aligned_cols=321 Identities=14% Similarity=0.083 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHhhc
Q 004369 144 TSLISGYVQNSQPELAIHVFLDMLEAGNYPTNVTLGTALTACSSLESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTC 223 (758)
Q Consensus 144 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~ 223 (758)
|-++.-|+..|+..+|.+..+++.. +.+....+=+++...+.-..+..+.-...+.+...+...-+.+..++.+.
T Consensus 218 n~~l~eyv~~getrea~rciR~L~v-----sffhhe~vkralv~ame~~~ae~l~l~llke~~e~glissSq~~kGfsr~ 292 (645)
T KOG0403|consen 218 NGNLIEYVEIGETREACRCIRELGV-----SFFHHEGVKRALVDAMEDALAEGLTLKLLKEGREEGLISSSQMGKGFSRK 292 (645)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhCC-----CchhhHHHHHHHHHHHhhhhcccceeccchhhhhhcchhhhccccCchhh
Q ss_pred C--------ChHHHHHHHhccCCCCcc----hHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCC
Q 004369 224 G--------SLNSAIKAFNRIREKNVM----SWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLS 291 (758)
Q Consensus 224 g--------~~~~A~~~f~~~~~~~~~----~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 291 (758)
+ +...|...|+.+..+++. .-|++-..-...|+.+. ++.|++ +...+|+-|...|+
T Consensus 293 ~~slddl~ldiP~a~~~~esiv~Ka~s~gwl~e~s~k~~s~~~g~~e~-~r~Fkk-----------~~~~IIqEYFlsgD 360 (645)
T KOG0403|consen 293 GGSLDDLVLDIPSARYDFESIVPKAPSGGWLDENSFKETSVLPGDSEN-LRAFKK-----------DLTPIIQEYFLSGD 360 (645)
T ss_pred ccccccccccCcchhhhhhhhcccCCCCCccchhhhcccccCCCcchH-HHHHHH-----------hhHHHHHHHHhcCC
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCeeechhHHHHHhhhchhhhchhhcCCChhH
Q 004369 292 LRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSHVNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTE 371 (758)
Q Consensus 292 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~ 371 (758)
..+..+.++.+-...+.|-...+..-+.+=.|...-+.|-.++..+.- ...+-.-++.+|........+. .=+.-.
T Consensus 361 t~Evi~~L~DLn~~E~~~~f~k~lITLAldrK~~ekEMasvllS~L~~-e~fsteDv~~~F~mLLesaedt---ALD~p~ 436 (645)
T KOG0403|consen 361 TPEVIRSLRDLNLPEYNPGFLKLLITLALDRKNSEKEMASVLLSDLHG-EVFSTEDVEKGFDMLLESAEDT---ALDIPR 436 (645)
T ss_pred hHHHHHHHHHcCCccccchHHHHHHHHHhccchhHHHHHHHHHHHhhc-ccCCHHHHHHHHHHHHhcchhh---hccccc
Q ss_pred HHHHHHHhHhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHc---------------------CCCChHHHHhHHh
Q 004369 372 ALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKT---------------------GFLSDVVVGTALV 430 (758)
Q Consensus 372 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~---------------------~~~~~~~~~~~Li 430 (758)
|-+.+......-+--+...-..+=....+..-...+.+..+.+... .+..-..-...|+
T Consensus 437 a~~elalFlARAViDdVLap~~leei~~~lp~~s~g~et~~~ArsLlsar~aGeRllr~WGgGG~g~sVed~kdkI~~LL 516 (645)
T KOG0403|consen 437 ASQELALFLARAVIDDVLAPTNLEEISGTLPPVSQGRETLDKARSLLSARHAGERLLRVWGGGGGGWSVEDAKDKIDMLL 516 (645)
T ss_pred cHHHHHHHHHHHHhhcccccCcHHHHcCCCCCchhhHHHHHHHHHHHHHhhcccchhheecCCCCcchHHHHHHHHHHHH
Q ss_pred hhHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 004369 431 NMYKKCGRIERASRVFVEMSTR---TLISWTSMITGFANHSLSHQALQLFEDMLLAGV 485 (758)
Q Consensus 431 ~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 485 (758)
.-|.-.|++.+|.+..+++.-| ..+.+.+++.+.-+.|+-+.-+.++++.-..|+
T Consensus 517 eEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl 574 (645)
T KOG0403|consen 517 EEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL 574 (645)
T ss_pred HHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc
No 357
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=65.61 E-value=76 Score=26.16 Aligned_cols=82 Identities=12% Similarity=0.125 Sum_probs=57.2
Q ss_pred cCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHH
Q 004369 86 NRKSLSNAEIIHAHIVKTGSHQDFFVMTFLVNVYGKCGNMEEAQKVFDNLPRINVVSWTSLISGYVQNSQPELAIHVFLD 165 (758)
Q Consensus 86 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 165 (758)
.....++|..|.+.+...+- ....+.-.-+..+...|++++|...=.....||..+|-+|-. .+.|-.+++..-+.+
T Consensus 18 G~HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~r 94 (116)
T PF09477_consen 18 GHHCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTR 94 (116)
T ss_dssp TTT-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHH
Confidence 34467889999999987763 344444455667889999999966666777899999988765 478888888888887
Q ss_pred HHHcC
Q 004369 166 MLEAG 170 (758)
Q Consensus 166 m~~~g 170 (758)
+-..|
T Consensus 95 la~~g 99 (116)
T PF09477_consen 95 LASSG 99 (116)
T ss_dssp HCT-S
T ss_pred HHhCC
Confidence 76654
No 358
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=64.34 E-value=65 Score=28.37 Aligned_cols=51 Identities=10% Similarity=0.027 Sum_probs=38.7
Q ss_pred CCcchHHHHHHHHHhCCC-chHHHHHHHHHHHcCCCCChhhHHHHHHHhccc
Q 004369 138 INVVSWTSLISGYVQNSQ-PELAIHVFLDMLEAGNYPTNVTLGTALTACSSL 188 (758)
Q Consensus 138 ~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 188 (758)
.+-.+|++++.+.++... ---+..+|..|.+.+.+++..-|..++++|.+.
T Consensus 77 ~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 77 LDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred cccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 355678888888866555 345677888888878888888888888887664
No 359
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=63.71 E-value=19 Score=34.33 Aligned_cols=57 Identities=11% Similarity=0.025 Sum_probs=30.1
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHh
Q 004369 561 SVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLT 617 (758)
Q Consensus 561 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 617 (758)
..=+-.+.+..+++.+.+-.++++++.|+..-....|+........+++|..++...
T Consensus 48 tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 48 TNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred hhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 333344444555555555555555555555555555555555555555555555544
No 360
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.69 E-value=2.7e+02 Score=31.82 Aligned_cols=24 Identities=8% Similarity=0.065 Sum_probs=17.5
Q ss_pred HHHHHHhhCCChhhHHHHHHHHHH
Q 004369 246 TVIGACGENGEAVQGLRFFSKMLS 269 (758)
Q Consensus 246 ~li~~~~~~g~~~~A~~l~~~m~~ 269 (758)
.|+.-|...+++++|+.++-....
T Consensus 510 ~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 510 VLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHHHHHHHccChHHHHHHHHhccC
Confidence 367777788888888887776643
No 361
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=63.67 E-value=61 Score=30.28 Aligned_cols=21 Identities=19% Similarity=0.243 Sum_probs=9.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHH
Q 004369 524 VMDHYMCLIDMFVRLGCIEEA 544 (758)
Q Consensus 524 ~~~~~~~li~~~~~~g~~~~A 544 (758)
|++.+.+|+..|.+.|+++.|
T Consensus 177 n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 177 NPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CHHHHHHHHHHHHHhcchhhh
Confidence 344444444444444444443
No 362
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.26 E-value=12 Score=42.19 Aligned_cols=119 Identities=18% Similarity=0.323 Sum_probs=73.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004369 467 HSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFD 546 (758)
Q Consensus 467 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 546 (758)
+.++++.+.+.+.-.--| .++|..+.+.|-.+-|+.+.+.=..++ ++...+|+++.|++
T Consensus 606 ~k~ydeVl~lI~ns~LvG--------qaiIaYLqKkgypeiAL~FVkD~~tRF-------------~LaLe~gnle~ale 664 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNLVG--------QAIIAYLQKKGYPEIALHFVKDERTRF-------------ELALECGNLEVALE 664 (1202)
T ss_pred hhhhHHHHHHHHhcCccc--------HHHHHHHHhcCCcceeeeeecCcchhe-------------eeehhcCCHHHHHH
Confidence 455666665554432222 234445556677776666554333222 23446888888888
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHh
Q 004369 547 FIKKMDFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLT 617 (758)
Q Consensus 547 ~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 617 (758)
.-++.+ |..+|..|+..-...|+.+.|+..+++.. .+..|+-.|.-.|+.++-.++.+..
T Consensus 665 ~akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~k--------nfekLsfLYliTgn~eKL~Km~~ia 724 (1202)
T KOG0292|consen 665 AAKKLD---DKDVWERLGEEALRQGNHQIAEMCYQRTK--------NFEKLSFLYLITGNLEKLSKMMKIA 724 (1202)
T ss_pred HHHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHhh--------hhhheeEEEEEeCCHHHHHHHHHHH
Confidence 877764 67788899988888899888888887763 3444555566666665554444433
No 363
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=63.20 E-value=1.5e+02 Score=29.34 Aligned_cols=105 Identities=12% Similarity=0.011 Sum_probs=50.9
Q ss_pred hcCChHHHHHHHhccCCCCcchHHHHHHHHhhCCChhhHHHHHHHH----HHCCCCCChhhHHHHHHHHcccCChH-HHH
Q 004369 222 TCGSLNSAIKAFNRIREKNVMSWTTVIGACGENGEAVQGLRFFSKM----LSEGIQPNEFTLTSISSVCGTMLSLR-VGA 296 (758)
Q Consensus 222 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m----~~~g~~p~~~t~~~ll~~~~~~~~~~-~a~ 296 (758)
+.+++++|.+++..- ...+.+.|+...|-++-.-| .+.++++|......++..+...+.-+ .-.
T Consensus 2 ~~kky~eAidLL~~G-----------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSG-----------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHHH-----------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 345666666654321 22345566655554443333 33456666655555555444332211 122
Q ss_pred HHHHHHH---HhC--CCCchhHHHHHHHHHHhcCCHHHHHHHHccC
Q 004369 297 QVHSLGI---KLG--YASNLRVRNSIMYLYLKCGLVDEAQKLFDGM 337 (758)
Q Consensus 297 ~~~~~~~---~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 337 (758)
++...++ +.| -.-|......+...|.+.|++.+|+..|-.-
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~ 116 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLG 116 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhc
Confidence 2333332 222 1236677888889999999999988877444
No 364
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=62.90 E-value=1.7e+02 Score=29.28 Aligned_cols=17 Identities=18% Similarity=0.098 Sum_probs=14.1
Q ss_pred CCChhHHHHHHHHhHhC
Q 004369 366 HNGGTEALSIFSKLNSS 382 (758)
Q Consensus 366 ~g~~~~A~~l~~~m~~~ 382 (758)
.|+.+.|..++.+....
T Consensus 6 ~~~~~~A~~~~~K~~~~ 22 (278)
T PF08631_consen 6 QGDLDLAEHMYSKAKDL 22 (278)
T ss_pred hCCHHHHHHHHHHhhhH
Confidence 88999999999887653
No 365
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=62.64 E-value=15 Score=29.33 Aligned_cols=44 Identities=23% Similarity=0.234 Sum_probs=29.5
Q ss_pred HHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhhC
Q 004369 577 FYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREE 620 (758)
Q Consensus 577 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 620 (758)
...+++.++.+|+|...-..++..|...|++++|.+.+-.+..+
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 34556666777777777777777777777777777776666553
No 366
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=62.47 E-value=37 Score=31.95 Aligned_cols=76 Identities=17% Similarity=0.099 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHhhhh-cCCCCCHHHHHHHHH
Q 004369 456 SWTSMITGFANHSLSHQALQLFEDMLLAGVRP-NQVTFVGALAACSNAGMVYEALGYFEMMQKE-YKIKPVMDHYMCLID 533 (758)
Q Consensus 456 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~-~~~~p~~~~~~~li~ 533 (758)
|.+.-|+.+.+.+...+|+.+.++-.+. +| |..+-..++.-++-.|++++|..-++...+- -...+....|..+|+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 3455567778888888888888877764 44 4555666777788888888888766655331 122333455665554
No 367
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=62.07 E-value=1.7e+02 Score=29.07 Aligned_cols=55 Identities=15% Similarity=0.150 Sum_probs=44.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 004369 529 MCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQL 583 (758)
Q Consensus 529 ~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 583 (758)
+.....|..+|.+.+|..+.++. ...| +...|..|+..+...||--.+..-++++
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 34457788999999999999998 6777 7888999999999999966666655544
No 368
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=61.97 E-value=1.3e+02 Score=33.95 Aligned_cols=194 Identities=15% Similarity=0.189 Sum_probs=106.3
Q ss_pred hHHHHHHHHhHhCCCCCCH---HHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChH-------HHHhHHhhhHHhcCCH
Q 004369 370 TEALSIFSKLNSSGMKPDL---YTFSSILTICSRLVALEQGEQIHALTLKTGFLSDV-------VVGTALVNMYKKCGRI 439 (758)
Q Consensus 370 ~~A~~l~~~m~~~g~~p~~---~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~-------~~~~~Li~~y~~~g~~ 439 (758)
++--..+.+|+..--.|+. .+...++-.|....+++...++.+.+.+..-..+. +.|.--++---+-|+-
T Consensus 180 ~~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDR 259 (1226)
T KOG4279|consen 180 DQLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDR 259 (1226)
T ss_pred HHHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccH
Confidence 3445567777765334433 45556666777777777777777766653210010 1122222223345777
Q ss_pred HHHHHHHHhcCC------CChh-----HHHHH--HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHhccc
Q 004369 440 ERASRVFVEMST------RTLI-----SWTSM--ITGFANHSLSHQALQLFEDMLLAGVRPNQVT---FVGALAACSNAG 503 (758)
Q Consensus 440 ~~A~~~~~~~~~------~~~~-----~~~~l--i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t---~~~ll~a~~~~g 503 (758)
++|+.+.-.+.+ ||.. .|.-| -+.|...+..+.|++.|++.-+ +.|+..+ +..|+.+-.+
T Consensus 260 akAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG~-- 335 (1226)
T KOG4279|consen 260 AKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAGE-- 335 (1226)
T ss_pred HHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhhh--
Confidence 777776655442 3332 22222 2344555666777777777766 5666433 3333332211
Q ss_pred cHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 004369 504 MVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKMDFEPNEVIWSVFIAGCRRHGNMELGFYAAEQL 583 (758)
Q Consensus 504 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 583 (758)
.++...+ ++. .--.|-..++|.|.+++-.++|+-. ..+.+-.-.+|+..|.++.+.+
T Consensus 336 ~Fens~E----lq~---------IgmkLn~LlgrKG~leklq~YWdV~----------~y~~asVLAnd~~kaiqAae~m 392 (1226)
T KOG4279|consen 336 HFENSLE----LQQ---------IGMKLNSLLGRKGALEKLQEYWDVA----------TYFEASVLANDYQKAIQAAEMM 392 (1226)
T ss_pred hccchHH----HHH---------HHHHHHHHhhccchHHHHHHHHhHH----------HhhhhhhhccCHHHHHHHHHHH
Confidence 1111111 111 1122345667888888877777643 3344555678999999999999
Q ss_pred hccCCCC
Q 004369 584 LKLKPKD 590 (758)
Q Consensus 584 ~~~~p~~ 590 (758)
++++|+.
T Consensus 393 fKLk~P~ 399 (1226)
T KOG4279|consen 393 FKLKPPV 399 (1226)
T ss_pred hccCCce
Confidence 9999873
No 369
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=61.56 E-value=1.1e+02 Score=30.76 Aligned_cols=51 Identities=10% Similarity=0.027 Sum_probs=26.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHhccccHHHHHHHHHHh
Q 004369 463 GFANHSLSHQALQLFEDMLLAGVRPNQ---VTFVGALAACSNAGMVYEALGYFEMM 515 (758)
Q Consensus 463 ~~~~~g~~~~A~~~~~~m~~~g~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~~ 515 (758)
+-.+.|+..+|.+.|+.+.+. .|-. .....++.+|.....+.+...++.+-
T Consensus 284 CARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakY 337 (556)
T KOG3807|consen 284 CARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKY 337 (556)
T ss_pred HHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334567777777777776553 2211 12234566666555555554444433
No 370
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.14 E-value=90 Score=34.23 Aligned_cols=163 Identities=20% Similarity=0.148 Sum_probs=104.6
Q ss_pred CcchHHHHHHH-----HHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCChhHH
Q 004369 139 NVVSWTSLISG-----YVQNSQPELAIHVFLDMLEAGNYPTNVTLGTALTACSSLESIRLGKQIHAYVVKYQTEDDTSVG 213 (758)
Q Consensus 139 ~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 213 (758)
++.+|..++.. .+..|+++.|-.++..+.+ ..-+.+...+.++|-.+.|. ....+||...
T Consensus 580 nVi~y~l~l~vleyqt~vmrrd~~~a~~vLp~I~k-------~~rt~va~Fle~~g~~e~AL-------~~s~D~d~rF- 644 (794)
T KOG0276|consen 580 NVISYKILLEVLEYQTLVLRRDLEVADGVLPTIPK-------EIRTKVAHFLESQGMKEQAL-------ELSTDPDQRF- 644 (794)
T ss_pred ceEeEeeehHHHHHHHHhhhccccccccccccCch-------hhhhhHHhHhhhccchHhhh-------hcCCChhhhh-
Confidence 55666555543 3455666666655544432 12233444444444444443 3333333322
Q ss_pred HHHHHHHhhcCChHHHHHHHhccCCCCcchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChH
Q 004369 214 NSLCSLYSTCGSLNSAIKAFNRIREKNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLR 293 (758)
Q Consensus 214 ~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 293 (758)
....+.|+++.|.++..+. .+..-|..|-.+..+.|++..|.+.|.+... |..|+-.+...|+-+
T Consensus 645 ----elal~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~ 709 (794)
T KOG0276|consen 645 ----ELALKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAE 709 (794)
T ss_pred ----hhhhhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChh
Confidence 2344678999998876554 4667899999999999999999999988765 566777777777777
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccC
Q 004369 294 VGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGM 337 (758)
Q Consensus 294 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 337 (758)
....+-....+.|. . |.-.-+|...|+++++.+++.+-
T Consensus 710 ~l~~la~~~~~~g~-~-----N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 710 GLAVLASLAKKQGK-N-----NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHHHHHhhcc-c-----chHHHHHHHcCCHHHHHHHHHhc
Confidence 66666666666652 2 33445677889999999988665
No 371
>PRK10941 hypothetical protein; Provisional
Probab=59.08 E-value=65 Score=31.99 Aligned_cols=68 Identities=12% Similarity=0.010 Sum_probs=53.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHH
Q 004369 528 YMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYA 595 (758)
Q Consensus 528 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 595 (758)
.+.+-..|.+.++++.|+.+.+.+ .+.| |..-|.--.-.|.+.|....|..-++..++.-|+++.+-.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence 344566788888999999988888 6667 4555777777788899999999999999988888776533
No 372
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.38 E-value=1.8e+02 Score=28.01 Aligned_cols=99 Identities=22% Similarity=0.346 Sum_probs=52.4
Q ss_pred ccHHHHHHHHHHhhhhcCC-CCCHHHHHHH---HHHHHHcCCHHHHHHHHHHc---CCCCCHHHHHH---HHH-H-HHHc
Q 004369 503 GMVYEALGYFEMMQKEYKI-KPVMDHYMCL---IDMFVRLGCIEEAFDFIKKM---DFEPNEVIWSV---FIA-G-CRRH 570 (758)
Q Consensus 503 g~~~~a~~~~~~~~~~~~~-~p~~~~~~~l---i~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~---ll~-~-~~~~ 570 (758)
.++++|+..|+..-+-+.. +.+...--|+ .+.-+..|++.+|+++|++. ....+..-|.. ++. + |.-.
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~ 207 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLC 207 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHh
Confidence 4555556555555442221 1122222233 33345677888999999887 22222222322 222 2 2222
Q ss_pred -CChhHHHHHHHHHhccCCC--CchhHHHHHHHh
Q 004369 571 -GNMELGFYAAEQLLKLKPK--DCESYAMLLDIF 601 (758)
Q Consensus 571 -g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~ 601 (758)
.|.-.+..++++-.+++|. ++.-+..|-+..
T Consensus 208 ~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~ 241 (288)
T KOG1586|consen 208 KADEVNAQRALEKYQELDPAFTDSRECKFLKDLL 241 (288)
T ss_pred cccHHHHHHHHHHHHhcCCcccccHHHHHHHHHH
Confidence 6777788888999999986 444444444443
No 373
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.37 E-value=1.5e+02 Score=27.07 Aligned_cols=121 Identities=16% Similarity=0.191 Sum_probs=75.6
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHH-HHHH--HHHHHHHcC
Q 004369 464 FANHSLSHQALQLFEDMLLAGVRPNQV-TFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMD-HYMC--LIDMFVRLG 539 (758)
Q Consensus 464 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~--li~~~~~~g 539 (758)
+++.+..++|+.-|.++.+.|...=.+ ..........+.|+...|...|+++-.+..+ |... -..- -..++...|
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~-P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSI-PQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCC-cchhhHHHHHHHHHHHhccc
Confidence 456677888888888887766432211 1122233456778888888888888664222 2211 1111 123456778
Q ss_pred CHHHHHHHHHHc--CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhc
Q 004369 540 CIEEAFDFIKKM--DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLK 585 (758)
Q Consensus 540 ~~~~A~~~~~~m--~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 585 (758)
.+++...-.+-+ +-.| ....-..|.-+-.+.|++..|...|.++..
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 888877777776 2233 344456777777888888888888888876
No 374
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=58.31 E-value=18 Score=34.19 Aligned_cols=57 Identities=23% Similarity=0.368 Sum_probs=44.3
Q ss_pred HHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCC
Q 004369 534 MFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKD 590 (758)
Q Consensus 534 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 590 (758)
+..+.|+.+.|.+++.+. ...| ....|--+...-.+.|+.+.|.+.+++.++++|+|
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 345667777788888877 5566 56678888888888888888888888888888875
No 375
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=57.58 E-value=28 Score=26.84 Aligned_cols=47 Identities=15% Similarity=0.145 Sum_probs=21.2
Q ss_pred ccccHHHHHHHHHHhhhhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHH
Q 004369 501 NAGMVYEALGYFEMMQKEYKIKPV-MDHYMCLIDMFVRLGCIEEAFDF 547 (758)
Q Consensus 501 ~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~ 547 (758)
+....++|+..+....++..-.|+ -.++.+|+.+|+..|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555443222222 12344455555555555554443
No 376
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=56.85 E-value=1.2e+02 Score=33.12 Aligned_cols=23 Identities=30% Similarity=0.702 Sum_probs=19.4
Q ss_pred HHhhhHHhcCCHHHHHHHHHhcC
Q 004369 428 ALVNMYKKCGRIERASRVFVEMS 450 (758)
Q Consensus 428 ~Li~~y~~~g~~~~A~~~~~~~~ 450 (758)
.|+.-|.+++++++|..++..|.
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCC
Confidence 46667889999999999998886
No 377
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=56.79 E-value=55 Score=34.65 Aligned_cols=39 Identities=18% Similarity=0.233 Sum_probs=28.8
Q ss_pred CCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCC
Q 004369 552 DFEPN--EVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKD 590 (758)
Q Consensus 552 ~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 590 (758)
.++|. ..++.+-+..+.+++|+..|-...++++++.|..
T Consensus 293 ~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 293 KLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp ---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred CCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 66663 4457778888899999999999999999999864
No 378
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=56.47 E-value=1.1e+02 Score=25.19 Aligned_cols=79 Identities=13% Similarity=0.107 Sum_probs=43.3
Q ss_pred chHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004369 403 ALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQALQLFEDMLL 482 (758)
Q Consensus 403 ~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 482 (758)
..++|..|.+.+...+- ....+--.-+..+...|++++|...=.....||...|-+|-. .+.|..+++...+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 34666666666665543 233333334445667788888855444455677777766643 466777777777766655
Q ss_pred cC
Q 004369 483 AG 484 (758)
Q Consensus 483 ~g 484 (758)
+|
T Consensus 98 ~g 99 (116)
T PF09477_consen 98 SG 99 (116)
T ss_dssp -S
T ss_pred CC
Confidence 44
No 379
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=56.12 E-value=1.7e+02 Score=30.97 Aligned_cols=53 Identities=19% Similarity=0.162 Sum_probs=35.4
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHhc--cccHHHHHHHHHHhhh
Q 004369 464 FANHSLSHQALQLFEDMLLAGVRPNQV--TFVGALAACSN--AGMVYEALGYFEMMQK 517 (758)
Q Consensus 464 ~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~--~g~~~~a~~~~~~~~~ 517 (758)
+...+++..|.++|+++... +.++.. .+..+..+|.. .-++++|.+.++....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34678888898998888876 555544 33444444433 4567788888887765
No 380
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=55.49 E-value=43 Score=29.44 Aligned_cols=67 Identities=13% Similarity=0.080 Sum_probs=47.7
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhH
Q 004369 541 IEEAFDFIKKMDFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDV 610 (758)
Q Consensus 541 ~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 610 (758)
-+.|.++.+-|| .....-.........|++..|.++.+.++..+|+|...-...+++|.+.|.-.+.
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~~ 123 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSEN 123 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-SS
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhccC
Confidence 356777777775 2233334555667799999999999999999999999999999988777654443
No 381
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=55.33 E-value=54 Score=33.03 Aligned_cols=90 Identities=17% Similarity=0.162 Sum_probs=69.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHc----CCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHh
Q 004369 528 YMCLIDMFVRLGCIEEAFDFIKKM----DFEP--NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIF 601 (758)
Q Consensus 528 ~~~li~~~~~~g~~~~A~~~~~~m----~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 601 (758)
|--=.+-|.+..++..|...|.+- --.| +.+.|+.=..+-...||+..++.-..+++..+|.+.-.|..=+.++
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~ 163 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCL 163 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHH
Confidence 333455677888999999998876 1223 4556777777777789999999999999999999999999888888
Q ss_pred hhCCCchhHHHHHHHh
Q 004369 602 VSAGRWEDVAVVKNLT 617 (758)
Q Consensus 602 ~~~g~~~~a~~~~~~m 617 (758)
....++++|....+..
T Consensus 164 ~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 164 LELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 8888877776655543
No 382
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=55.23 E-value=1.3e+02 Score=29.81 Aligned_cols=87 Identities=13% Similarity=0.150 Sum_probs=54.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH--
Q 004369 461 ITGFANHSLSHQALQLFEDMLL--AGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFV-- 536 (758)
Q Consensus 461 i~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~-- 536 (758)
|.+++..+++.+++...-+--. +.++|...-...+ -|++.+.+..+.++-...... .-.-+..-|..+++.|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCIL--LysKv~Ep~amlev~~~WL~~-p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCIL--LYSKVQEPAAMLEVASAWLQD-PSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHH--HHHHhcCHHHHHHHHHHHHhC-cccCCchhhHHHHHHHHHH
Confidence 6788888888887765433322 1244544444433 478888888888777766553 22223344777776665
Q ss_pred ---HcCCHHHHHHHHHH
Q 004369 537 ---RLGCIEEAFDFIKK 550 (758)
Q Consensus 537 ---~~g~~~~A~~~~~~ 550 (758)
=.|.++||++++..
T Consensus 167 VLlPLG~~~eAeelv~g 183 (309)
T PF07163_consen 167 VLLPLGHFSEAEELVVG 183 (309)
T ss_pred HHhccccHHHHHHHHhc
Confidence 45899999988844
No 383
>PF13934 ELYS: Nuclear pore complex assembly
Probab=55.00 E-value=2e+02 Score=27.68 Aligned_cols=106 Identities=20% Similarity=0.230 Sum_probs=54.2
Q ss_pred HHHHHHHHH--hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHH
Q 004369 457 WTSMITGFA--NHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDM 534 (758)
Q Consensus 457 ~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 534 (758)
|...+.||- .++++++|++++-.- .+.|+.. .-++.++...|+.+.|..+++.+.- .-.+.+....+...
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~~~--~~Il~~L~~~~~~~lAL~y~~~~~p---~l~s~~~~~~~~~~ 150 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHP---SLIPWFP--DKILQALLRRGDPKLALRYLRAVGP---PLSSPEALTLYFVA 150 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCC---CCCcccH--HHHHHHHHHCCChhHHHHHHHhcCC---CCCCHHHHHHHHHH
Confidence 444555543 355666666665221 1223321 1355555556777777777766532 11222333333333
Q ss_pred HHHcCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 004369 535 FVRLGCIEEAFDFIKKMDFEPNEVIWSVFIAGCRRHG 571 (758)
Q Consensus 535 ~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g 571 (758)
..+|.+.||..+.+...-.-....|..++..|....
T Consensus 151 -La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 151 -LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEEC 186 (226)
T ss_pred -HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHHh
Confidence 455777777777776532212345666666665443
No 384
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=54.93 E-value=92 Score=24.87 Aligned_cols=62 Identities=18% Similarity=0.111 Sum_probs=38.7
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCC--CchhHHHHHHHhhhCCCch-hHHHHHHHh
Q 004369 556 NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPK--DCESYAMLLDIFVSAGRWE-DVAVVKNLT 617 (758)
Q Consensus 556 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~-~a~~~~~~m 617 (758)
|....-.+...+...|+++.|.+.+-.+++.+|+ +...-..|+.++...|.-+ -+.+.++++
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 4556667777777788888888887777777654 4566677777777777633 455555544
No 385
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=54.18 E-value=1.6e+02 Score=26.08 Aligned_cols=47 Identities=15% Similarity=0.181 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 004369 455 ISWTSMITGFANHSL-SHQALQLFEDMLLAGVRPNQVTFVGALAACSN 501 (758)
Q Consensus 455 ~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 501 (758)
.+|.+++.+.++..- ---+..+|.-|++.+.+++..-|..++.+|.+
T Consensus 80 ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~ 127 (145)
T PF13762_consen 80 SSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALR 127 (145)
T ss_pred chHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Confidence 345555555544333 23344555555555555555555555555444
No 386
>PHA02875 ankyrin repeat protein; Provisional
Probab=53.68 E-value=2.6e+02 Score=29.80 Aligned_cols=77 Identities=9% Similarity=-0.005 Sum_probs=35.4
Q ss_pred HhCCCchHHHHHHHHHHHcCCCCChhh--HHHHHHHhcccCChHHHHHHHHHHHHhCCCCChh--HHHHHHHHHhhcCCh
Q 004369 151 VQNSQPELAIHVFLDMLEAGNYPTNVT--LGTALTACSSLESIRLGKQIHAYVVKYQTEDDTS--VGNSLCSLYSTCGSL 226 (758)
Q Consensus 151 ~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~Li~~y~~~g~~ 226 (758)
++.|+.+- ++.+.+.|..|+... ..+.+..++..|+.+.+ +.+++.|..++.. ....-+...++.|+.
T Consensus 10 ~~~g~~~i----v~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v----~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~ 81 (413)
T PHA02875 10 ILFGELDI----ARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAI----KLLMKHGAIPDVKYPDIESELHDAVEEGDV 81 (413)
T ss_pred HHhCCHHH----HHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHH----HHHHhCCCCccccCCCcccHHHHHHHCCCH
Confidence 44555544 334445576665432 23344444455555433 3444455444321 112233444455666
Q ss_pred HHHHHHHhc
Q 004369 227 NSAIKAFNR 235 (758)
Q Consensus 227 ~~A~~~f~~ 235 (758)
+....+++.
T Consensus 82 ~~v~~Ll~~ 90 (413)
T PHA02875 82 KAVEELLDL 90 (413)
T ss_pred HHHHHHHHc
Confidence 655555543
No 387
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=53.46 E-value=42 Score=36.39 Aligned_cols=100 Identities=16% Similarity=0.122 Sum_probs=71.5
Q ss_pred hccccHHHHHHHHHHhhhhcCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHc-CCC-CCHHHHHHHHHHHHHcCChhH
Q 004369 500 SNAGMVYEALGYFEMMQKEYKIKPVM--DHYMCLIDMFVRLGCIEEAFDFIKKM-DFE-PNEVIWSVFIAGCRRHGNMEL 575 (758)
Q Consensus 500 ~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~ 575 (758)
.-.|+...|...+..+. ...|.. .....|...+.+.|...+|-.++.+. .+. ..+.++.++..++....+++.
T Consensus 618 r~~gn~~~a~~cl~~a~---~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~ 694 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRAL---NLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISG 694 (886)
T ss_pred eecCCcHHHHHHHHHHh---ccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHH
Confidence 34678888888777664 333421 22345667777788888888887765 222 245567788888888899999
Q ss_pred HHHHHHHHhccCCCCchhHHHHHHHhh
Q 004369 576 GFYAAEQLLKLKPKDCESYAMLLDIFV 602 (758)
Q Consensus 576 a~~~~~~~~~~~p~~~~~~~~l~~~~~ 602 (758)
|++.+++++++.|+++..-..|..+-+
T Consensus 695 a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 695 ALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 999999999999999888777755544
No 388
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.89 E-value=2e+02 Score=26.88 Aligned_cols=88 Identities=9% Similarity=0.006 Sum_probs=45.3
Q ss_pred HHhcccchHHHHHHHHHHHHcCCCCh--HHHHhHHhhhHHhcCCHHHHHHHHHhcCCCChhH--HHHHHHHHHhcCCHHH
Q 004369 397 ICSRLVALEQGEQIHALTLKTGFLSD--VVVGTALVNMYKKCGRIERASRVFVEMSTRTLIS--WTSMITGFANHSLSHQ 472 (758)
Q Consensus 397 a~~~~~~~~~a~~i~~~~~~~~~~~~--~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~ 472 (758)
.....++++.|...+.......-+.+ ..+--.|.......|.+++|...++....++-.+ -..-...+...|+-++
T Consensus 98 ~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~ 177 (207)
T COG2976 98 AEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQE 177 (207)
T ss_pred HHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHH
Confidence 34455666666666555543221111 1111233444555666677766666665543322 2222345666666666
Q ss_pred HHHHHHHHHHcC
Q 004369 473 ALQLFEDMLLAG 484 (758)
Q Consensus 473 A~~~~~~m~~~g 484 (758)
|..-|++.+..+
T Consensus 178 Ar~ay~kAl~~~ 189 (207)
T COG2976 178 ARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHcc
Confidence 666666666654
No 389
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=52.65 E-value=3e+02 Score=28.85 Aligned_cols=97 Identities=19% Similarity=0.187 Sum_probs=59.4
Q ss_pred CHHHHHHH---HHHHhccccHHHHHHHHHHhhhhcCCCC--CHHHHHHHHHHHH-HcCCHHHHHHHHHHcCC--------
Q 004369 488 NQVTFVGA---LAACSNAGMVYEALGYFEMMQKEYKIKP--VMDHYMCLIDMFV-RLGCIEEAFDFIKKMDF-------- 553 (758)
Q Consensus 488 ~~~t~~~l---l~a~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~-------- 553 (758)
|..-|.++ +..+.+.|-+..|.++.+-+.. +.| |......+||.|+ ++++++--+++++....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLls---Ldp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~ 175 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLS---LDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLS 175 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh---cCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhh
Confidence 33444444 4466778888888888887754 444 3455556677775 77777777777776521
Q ss_pred -CCCHHHHHHHHHHHHHcCCh---------------hHHHHHHHHHhccCCC
Q 004369 554 -EPNEVIWSVFIAGCRRHGNM---------------ELGFYAAEQLLKLKPK 589 (758)
Q Consensus 554 -~p~~~~~~~ll~~~~~~g~~---------------~~a~~~~~~~~~~~p~ 589 (758)
-|+ ..|+.-+ ++...++. +.|...+.+++..-|.
T Consensus 176 ~lPn-~a~S~aL-A~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 176 LLPN-FAFSIAL-AYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred hCcc-HHHHHHH-HHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 122 2233333 33344444 7888888888877763
No 390
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=52.53 E-value=24 Score=21.04 Aligned_cols=29 Identities=24% Similarity=0.282 Sum_probs=20.7
Q ss_pred CChhHHHHHHHHHhccCCCCchhHHHHHH
Q 004369 571 GNMELGFYAAEQLLKLKPKDCESYAMLLD 599 (758)
Q Consensus 571 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 599 (758)
|+.+.+..++++++...|.++..+...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 45677788888888877777666665544
No 391
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=51.96 E-value=89 Score=26.61 Aligned_cols=71 Identities=14% Similarity=0.220 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 004369 472 QALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM 551 (758)
Q Consensus 472 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 551 (758)
+..+-++....-.+.|+.......|.||.+.+++..|.++|+-++. ...+....|..+++ +-..+.+++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~--K~g~~k~~Y~y~v~---------elkpvl~EL 135 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD--KCGAQKQVYPYYVK---------ELKPVLNEL 135 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH--hcccHHHHHHHHHH---------HHHHHHHHh
Confidence 4445555666667899999999999999999999999999998875 44444456766654 445556666
Q ss_pred CC
Q 004369 552 DF 553 (758)
Q Consensus 552 ~~ 553 (758)
|+
T Consensus 136 GI 137 (149)
T KOG4077|consen 136 GI 137 (149)
T ss_pred CC
Confidence 54
No 392
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=51.49 E-value=4.6e+02 Score=30.66 Aligned_cols=215 Identities=13% Similarity=0.030 Sum_probs=112.0
Q ss_pred hcccchHHHHHHHHHHHHcCCCChH-------HHHhHHhhh-HHhcCCHHHHHHHHHhcC--------CCChhHHHHHHH
Q 004369 399 SRLVALEQGEQIHALTLKTGFLSDV-------VVGTALVNM-YKKCGRIERASRVFVEMS--------TRTLISWTSMIT 462 (758)
Q Consensus 399 ~~~~~~~~a~~i~~~~~~~~~~~~~-------~~~~~Li~~-y~~~g~~~~A~~~~~~~~--------~~~~~~~~~li~ 462 (758)
....++.+|..+.++....--.|+. ..+++|-.. ....|++++|.++-+... ...++.+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 3456677777777666553222111 122222211 123578888877765533 235677788888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH---HH--HHHhccc--cHHHHHHHHHHhhhhcCCC-----CCHHHHHH
Q 004369 463 GFANHSLSHQALQLFEDMLLAGVRPNQVTFVG---AL--AACSNAG--MVYEALGYFEMMQKEYKIK-----PVMDHYMC 530 (758)
Q Consensus 463 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~---ll--~a~~~~g--~~~~a~~~~~~~~~~~~~~-----p~~~~~~~ 530 (758)
+..-.|++++|..+.++..+..-+-|...|.. +. ..|...| .+.+....|......+.-. +-...+..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 88889999999998877665422333332222 21 2345566 3344444444443322111 12234444
Q ss_pred HHHHHHHcCCHHHHHHHHHHc-----CCCCCH-HH---HHHHHHHHHHcCChhHHHHHHHHHhccCCCC--chhHH---H
Q 004369 531 LIDMFVRLGCIEEAFDFIKKM-----DFEPNE-VI---WSVFIAGCRRHGNMELGFYAAEQLLKLKPKD--CESYA---M 596 (758)
Q Consensus 531 li~~~~~~g~~~~A~~~~~~m-----~~~p~~-~~---~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~---~ 596 (758)
+...+.| ++.+..-...- ...|.. .. +..|+......|+.+.|.....++..+--.. ...|. .
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~ 662 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAY 662 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 4555554 44433322221 122221 11 2356677788999999998888887643221 12222 1
Q ss_pred HHH--HhhhCCCchhHHHHHHH
Q 004369 597 LLD--IFVSAGRWEDVAVVKNL 616 (758)
Q Consensus 597 l~~--~~~~~g~~~~a~~~~~~ 616 (758)
++. .-...|+.+++.....+
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHh
Confidence 222 12456788777766555
No 393
>PRK09169 hypothetical protein; Validated
Probab=50.99 E-value=7.2e+02 Score=32.80 Aligned_cols=365 Identities=10% Similarity=-0.010 Sum_probs=189.9
Q ss_pred chHHHHHHHHhhCCChhhHHHHHH----HHHHC---CCCCChhhHHHHHHHHcccCChHHHHHHHHHHHH-------hCC
Q 004369 242 MSWTTVIGACGENGEAVQGLRFFS----KMLSE---GIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIK-------LGY 307 (758)
Q Consensus 242 ~~~~~li~~~~~~g~~~~A~~l~~----~m~~~---g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-------~g~ 307 (758)
.....++++++|-.+.+.+...-. ++... .-.-|..-+...++++++..+.+.+.+.-..+-. ..-
T Consensus 247 q~va~~LNAlSKWp~~~~c~~aa~~lA~rla~~~~lr~~~~~Q~vAN~LNALSKwp~~~~cr~aa~~LA~rL~~~~~l~~ 326 (2316)
T PRK09169 247 QEVALLLNALSKWPDDEACRQAAEALAARLAREPGLRLALDPQGVANALNALSKWPDTEACRQAAEALAERLAQERGLLQ 326 (2316)
T ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHhcChhhhhhcCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhChhhhh
Confidence 344556666666544433322221 11111 1124555667778888877655433322211110 112
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHH----HHHccCCC-------CCeeechhHHHHHhhhchhhhchhhcCCChh----HH
Q 004369 308 ASNLRVRNSIMYLYLKCGLVDEAQ----KLFDGMSH-------VNLVTWNAMIAGHAQMMDLAKDDLSAHNGGT----EA 372 (758)
Q Consensus 308 ~~~~~~~~~li~~~~~~g~~~~A~----~~~~~m~~-------~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~----~A 372 (758)
..+..-....+++++|..+-+.+. .+-+.+.. -|..-....+.++.+ -+..+ .|
T Consensus 327 ~~~aQ~vAN~LNALSKWp~~~~c~~Aa~~LA~rL~~~~~l~~~~npQelANaLnALSK-----------wp~~~~cr~AA 395 (2316)
T PRK09169 327 AMNAQAVANALNALSKWPDEEACRAAAEALAARLARDAGLRRALNAQELANALNALSK-----------WPDEEACRAAA 395 (2316)
T ss_pred hCCHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhChhhhhhCCHHHHHHHHHHHHc-----------CCCchHHHHHH
Confidence 334444556677778877665432 22222211 223334455666666 33222 23
Q ss_pred HHHHHHhHhC-C--CCCCHHHHHHHHHHHhcccchHHHHHHHHHH----HHc---CCCChHHHHhHHhhhHHhcCCHHH-
Q 004369 373 LSIFSKLNSS-G--MKPDLYTFSSILTICSRLVALEQGEQIHALT----LKT---GFLSDVVVGTALVNMYKKCGRIER- 441 (758)
Q Consensus 373 ~~l~~~m~~~-g--~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~----~~~---~~~~~~~~~~~Li~~y~~~g~~~~- 441 (758)
..+...+... + -.-|..-....+.+|++.+.-+.+.+....+ ... .-..+..-....+.+++|.++-+.
T Consensus 396 ~aLA~rL~~~~~l~~~fnaQ~vANaLnALsKWp~~~~c~~aa~aLA~rl~~~a~lr~~fn~QeLaN~LnALsKWp~~~~c 475 (2316)
T PRK09169 396 EALAARLARDAGLRAALNAQGVANALNALSKWPGAEACRQAALALAARLAADARLRNALSAQELANALNALSKWPDEAAC 475 (2316)
T ss_pred HHHHHHHHhchhhhhhcChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhchhhhhhCCHHHHHHHHHHHhcCCchHHH
Confidence 3333333332 1 1356777888999999887766444333222 111 123355666677788888776442
Q ss_pred ---HHHHHHhcC-------CCChhHHHHHHHHHHhcCCHHHHHH----HHHHHHHc---CCCCCHHHHHHHHHHHhcccc
Q 004369 442 ---ASRVFVEMS-------TRTLISWTSMITGFANHSLSHQALQ----LFEDMLLA---GVRPNQVTFVGALAACSNAGM 504 (758)
Q Consensus 442 ---A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~----~~~~m~~~---g~~p~~~t~~~ll~a~~~~g~ 504 (758)
|..+...+. .-+..-....+.++++-++.+.+.. +..++... --.-|..-+...++++++-.+
T Consensus 476 ~~aa~~LA~rl~~~~~l~~af~~Q~lAN~LnALsKwp~~~~c~~aA~aLA~rla~~~~l~~afnpQ~lAN~LnALSKWP~ 555 (2316)
T PRK09169 476 RRAAEALAARLAGDAELRQALDAQGLANALNALSKWPDSDACRAAAEALADRLAQDPALLQAMDAQGLANTLNALSKWPE 555 (2316)
T ss_pred HHHHHHHHHHHhcChhhhhhcChHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhcChhhhhhcCHHHHHHHHHHHHcCCC
Confidence 233333332 1144556678888998887655433 33222221 112355667788899998776
Q ss_pred HHHHH----HHHHHhhhhc--CCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHc----C--CCCCHHHHHHHHHHHH
Q 004369 505 VYEAL----GYFEMMQKEY--KIKPVMDHYMCLIDMFVRLGCIEE----AFDFIKKM----D--FEPNEVIWSVFIAGCR 568 (758)
Q Consensus 505 ~~~a~----~~~~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~~----A~~~~~~m----~--~~p~~~~~~~ll~~~~ 568 (758)
.+.+. .+...+..+- --..+.......++++.|.+.-.. |..+.... + -.-|.--+.++++++.
T Consensus 556 ~~~cr~AA~aLA~~la~~~~l~~~~naQ~LAN~LnALSKWP~~~acr~Aa~aLA~rla~~~~~~~afn~Q~lAN~LnALS 635 (2316)
T PRK09169 556 EPDCRAAAEALAARLARRPDLRSALNAQGLANLLNALSKWPDEDACRAAAEALAGRLARDAGLLDAFNAQDLANLLNGLS 635 (2316)
T ss_pred chHHHHHHHHHHHHHhcChhhhhccCHHHHHHHHHHHhhCCCchhHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHh
Confidence 43332 2333332211 112345777888999999886432 33344443 1 1125666889999999
Q ss_pred HcCChhHHHHHHHHHhc---cCC-----CCchhHHHHHHHhhhCCCchhHHHHHHHh
Q 004369 569 RHGNMELGFYAAEQLLK---LKP-----KDCESYAMLLDIFVSAGRWEDVAVVKNLT 617 (758)
Q Consensus 569 ~~g~~~~a~~~~~~~~~---~~p-----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 617 (758)
+-.+.+....+...+-+ .++ -++.....+.|++++-...+.+.+....+
T Consensus 636 KWP~~~~cr~Aa~aLA~~L~~~~~l~~af~aQ~LaN~LnALSKWp~~~~c~~Aa~aL 692 (2316)
T PRK09169 636 KWPDEDDCRQAAEALAARLLRDAGLPRAFDAQGLANALNALSKWPDEAACRAAALAL 692 (2316)
T ss_pred cCCCchhHHHHHHHHHHHHhhcchhHHhcCcHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 98887765554444432 111 14455666677777776655544444333
No 394
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=50.24 E-value=78 Score=27.42 Aligned_cols=70 Identities=14% Similarity=0.164 Sum_probs=42.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHH---HHHHHHHc-C-CCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCch
Q 004369 523 PVMDHYMCLIDMFVRLGCIEE---AFDFIKKM-D-FEP--NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCE 592 (758)
Q Consensus 523 p~~~~~~~li~~~~~~g~~~~---A~~~~~~m-~-~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 592 (758)
++..+--.+..++.+..+.++ -+.++++. + -.| +....--|.-+|.+.|+++++.++.+.+++.+|+|..
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q 106 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQ 106 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence 333444444555555544332 33444444 2 223 2233445667889999999999999999999998643
No 395
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.24 E-value=2.1e+02 Score=31.46 Aligned_cols=55 Identities=20% Similarity=0.280 Sum_probs=42.2
Q ss_pred HHHHHHcCChhHHHHHHHHHhccCCC-CchhHHHHHHHhh-hCCCchhHHHHHHHhh
Q 004369 564 IAGCRRHGNMELGFYAAEQLLKLKPK-DCESYAMLLDIFV-SAGRWEDVAVVKNLTR 618 (758)
Q Consensus 564 l~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~ 618 (758)
+....+.|-+..|.+..+.++.++|. ||.....+++.|+ ++.++.--+++++..+
T Consensus 349 m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e 405 (665)
T KOG2422|consen 349 MQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPE 405 (665)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34456778888899999999999987 8888888888886 5567777777766663
No 396
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=49.84 E-value=48 Score=25.59 Aligned_cols=47 Identities=19% Similarity=0.099 Sum_probs=32.7
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccccHHHHHHHH
Q 004369 466 NHSLSHQALQLFEDMLLAGVRPN--QVTFVGALAACSNAGMVYEALGYF 512 (758)
Q Consensus 466 ~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~ 512 (758)
...+.++|+..|+...+.-..|. -.++..++.+++..|++.+.+++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888777543333 346777788888888888776653
No 397
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=49.59 E-value=28 Score=34.34 Aligned_cols=57 Identities=16% Similarity=0.180 Sum_probs=32.3
Q ss_pred HcCCHHHHHHHHHHc-CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchh
Q 004369 537 RLGCIEEAFDFIKKM-DFEPN-EVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCES 593 (758)
Q Consensus 537 ~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 593 (758)
+.|+.|+|..+|+.. ...|+ ..+..-+..-...+++.-+|.+++-+++.+.|.+..+
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseA 186 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEA 186 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHH
Confidence 556666666666654 44452 3333334444444566666667777777666665543
No 398
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=49.02 E-value=58 Score=30.45 Aligned_cols=37 Identities=14% Similarity=0.138 Sum_probs=28.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhccCC
Q 004369 552 DFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKP 588 (758)
Q Consensus 552 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 588 (758)
...|+..++..++.++...|+.++|.+..+++..+-|
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4567777777777777777777777777777777777
No 399
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=48.70 E-value=3.4e+02 Score=28.35 Aligned_cols=108 Identities=16% Similarity=0.205 Sum_probs=77.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHcCCCCCHHHHHH------------HHHHHHHcCChhHHHHHHHHHhccC---CC----C
Q 004369 530 CLIDMFVRLGCIEEAFDFIKKMDFEPNEVIWSV------------FIAGCRRHGNMELGFYAAEQLLKLK---PK----D 590 (758)
Q Consensus 530 ~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~------------ll~~~~~~g~~~~a~~~~~~~~~~~---p~----~ 590 (758)
.|...+-.+|++++|..++.+.+++ ||.+ =+.-|...+|+-.|.-+.+++.... |+ -
T Consensus 136 ~L~~ike~~Gdi~~Aa~il~el~VE----Tygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lK 211 (439)
T KOG1498|consen 136 MLAKIKEEQGDIAEAADILCELQVE----TYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELK 211 (439)
T ss_pred HHHHHHHHcCCHHHHHHHHHhcchh----hhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHH
Confidence 4566778899999999999887533 2222 2356777889999988888775432 32 1
Q ss_pred chhHHHHHHHhhhCCCchhHHHHHHHhhhCCCCCCCceeEEEECCEEEEEe
Q 004369 591 CESYAMLLDIFVSAGRWEDVAVVKNLTREEKLSETDDWSWIRIKDKVYSFK 641 (758)
Q Consensus 591 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~ 641 (758)
...|..+.......+.+-++.+.++.+-+.|-.+....-|+++-..+..|.
T Consensus 212 lkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~iv~f~ 262 (439)
T KOG1498|consen 212 LKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRSIVSFC 262 (439)
T ss_pred HHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhhheeEE
Confidence 237888999999999999999999999887766665556776644444454
No 400
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=48.69 E-value=67 Score=30.04 Aligned_cols=48 Identities=19% Similarity=0.168 Sum_probs=26.9
Q ss_pred cHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 004369 504 MVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM 551 (758)
Q Consensus 504 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 551 (758)
+.+......+.+.+.....|+...|..++..+...|+.++|....+++
T Consensus 123 ~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 123 DPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred CHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333333333333333344566666666666666666666666666665
No 401
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=48.49 E-value=38 Score=21.58 Aligned_cols=30 Identities=10% Similarity=-0.040 Sum_probs=18.0
Q ss_pred HHHHHHHHHHcCChhHHHHH--HHHHhccCCC
Q 004369 560 WSVFIAGCRRHGNMELGFYA--AEQLLKLKPK 589 (758)
Q Consensus 560 ~~~ll~~~~~~g~~~~a~~~--~~~~~~~~p~ 589 (758)
|-.+...+...|++++|+.+ ++-+..++|.
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 44556666777777777777 4466555554
No 402
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=46.73 E-value=47 Score=22.36 Aligned_cols=23 Identities=13% Similarity=0.229 Sum_probs=13.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 004369 460 MITGFANHSLSHQALQLFEDMLL 482 (758)
Q Consensus 460 li~~~~~~g~~~~A~~~~~~m~~ 482 (758)
+..+|...|+.+.|.+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34555566666666666666554
No 403
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=45.65 E-value=6.2e+02 Score=30.51 Aligned_cols=45 Identities=13% Similarity=-0.051 Sum_probs=22.1
Q ss_pred CCchhHHHHHHHHhhcCCChHHHHHHHccCCCCCcchHHHHHHHH
Q 004369 106 HQDFFVMTFLVNVYGKCGNMEEAQKVFDNLPRINVVSWTSLISGY 150 (758)
Q Consensus 106 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~ 150 (758)
.+|..+-..-+..+.+.+..+....+...+..+|...-...+.++
T Consensus 632 D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL 676 (897)
T PRK13800 632 DPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGL 676 (897)
T ss_pred CCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 566666666666666666544333344444444433333333333
No 404
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=44.79 E-value=1.1e+02 Score=25.38 Aligned_cols=28 Identities=11% Similarity=0.236 Sum_probs=25.5
Q ss_pred chHHHHHHHHhhCCChhhHHHHHHHHHH
Q 004369 242 MSWTTVIGACGENGEAVQGLRFFSKMLS 269 (758)
Q Consensus 242 ~~~~~li~~~~~~g~~~~A~~l~~~m~~ 269 (758)
.-|..|+.-|...|..++|++++.+...
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 4699999999999999999999999877
No 405
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=44.04 E-value=2.7e+02 Score=25.89 Aligned_cols=98 Identities=14% Similarity=0.063 Sum_probs=62.1
Q ss_pred HHHHhccCCCCcchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHHHHHHHHHHHhC---
Q 004369 230 IKAFNRIREKNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKLG--- 306 (758)
Q Consensus 230 ~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g--- 306 (758)
..+.++.+++-.+.|-.....-++.-+.+++-+.|-- .+=.+++-.|-+..++.+++++++.+.+..
T Consensus 96 ~~Ltkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~LG----------RiGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~f 165 (233)
T PF14669_consen 96 EALTKDSKDKPGVPFCEFAETVCKDPQNDEVDKTLLG----------RIGISLMYSYHKTLQWSKGRKVLDKLHELQIHF 165 (233)
T ss_pred HHHHhcccccCCCCHHHHHHHHhcCCccchhhhhhhh----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3344444444455666666655555444443332211 122356667777778888888888776642
Q ss_pred -----------CCCchhHHHHHHHHHHhcCCHHHHHHHHccC
Q 004369 307 -----------YASNLRVRNSIMYLYLKCGLVDEAQKLFDGM 337 (758)
Q Consensus 307 -----------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 337 (758)
..+--.+.|.-...+.+.|.+|.|..++++-
T Consensus 166 t~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLres 207 (233)
T PF14669_consen 166 TSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRES 207 (233)
T ss_pred hhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhcc
Confidence 2344567788899999999999999999854
No 406
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=43.91 E-value=1.3e+02 Score=23.75 Aligned_cols=66 Identities=11% Similarity=0.073 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHH
Q 004369 93 AEIIHAHIVKTGSHQDFFVMTFLVNVYGKCGNMEEAQKVFDNLPRINVVSWTSLISGYVQNSQPELAI 160 (758)
Q Consensus 93 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~ 160 (758)
+..+++.+++.|+-. ......+-.+-...|+.+.|+++++.++ +....|..++.++-..|.-.-|-
T Consensus 21 ~~~v~d~ll~~~ilT-~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGLLT-EEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCCCC-HHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 345666666666322 1222222222225688888888888888 77778888888888777655543
No 407
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=43.53 E-value=1.9e+02 Score=28.59 Aligned_cols=85 Identities=19% Similarity=0.133 Sum_probs=50.0
Q ss_pred HHHHhhCCChhhHHHHHHHHHHC--CCCCChhhHHHHHHHHcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh--
Q 004369 248 IGACGENGEAVQGLRFFSKMLSE--GIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLK-- 323 (758)
Q Consensus 248 i~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-- 323 (758)
|.+++..++|.+++...-+--.. .++|.. .-.-|-.|++.+......++-+.-++..-..+..-|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkI--leLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKI--LELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHH--HHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 56667777777766655444332 233322 333344456667776666666655554333344456777766655
Q ss_pred ---cCCHHHHHHHH
Q 004369 324 ---CGLVDEAQKLF 334 (758)
Q Consensus 324 ---~g~~~~A~~~~ 334 (758)
.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 58999999887
No 408
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=43.46 E-value=6e+02 Score=29.75 Aligned_cols=87 Identities=8% Similarity=0.069 Sum_probs=54.2
Q ss_pred HhhcCChHHHHHHHhccC----CCCc-------chHHHHHHH-HhhCCChhhHHHHHHHHHHC----CCCCChhhHHHHH
Q 004369 220 YSTCGSLNSAIKAFNRIR----EKNV-------MSWTTVIGA-CGENGEAVQGLRFFSKMLSE----GIQPNEFTLTSIS 283 (758)
Q Consensus 220 y~~~g~~~~A~~~f~~~~----~~~~-------~~~~~li~~-~~~~g~~~~A~~l~~~m~~~----g~~p~~~t~~~ll 283 (758)
.....++++|..+..+.. .|+. ..|+++-.. ....|++++|.++-+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 345578888887776554 2322 256666433 33468888888887776553 1223444555566
Q ss_pred HHHcccCChHHHHHHHHHHHHhC
Q 004369 284 SVCGTMLSLRVGAQVHSLGIKLG 306 (758)
Q Consensus 284 ~~~~~~~~~~~a~~~~~~~~~~g 306 (758)
.+..-.|+++.|..+.....+..
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a 527 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMA 527 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHH
Confidence 66667788888888877776653
No 409
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=43.20 E-value=51 Score=32.77 Aligned_cols=77 Identities=9% Similarity=0.027 Sum_probs=50.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHH-HHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHH
Q 004369 522 KPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSV-FIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLL 598 (758)
Q Consensus 522 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 598 (758)
..|+..|...+.-..+.|.+.+.-.++.+. ...| |+..|-. --.-+..+++++.+..++.+.++++|++|..+....
T Consensus 104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyf 183 (435)
T COG5191 104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYF 183 (435)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHH
Confidence 345555555555444555666666666665 4455 5556643 333456789999999999999999999988766543
No 410
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=42.88 E-value=82 Score=25.29 Aligned_cols=26 Identities=27% Similarity=0.315 Sum_probs=17.4
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHhcc
Q 004369 561 SVFIAGCRRHGNMELGFYAAEQLLKL 586 (758)
Q Consensus 561 ~~ll~~~~~~g~~~~a~~~~~~~~~~ 586 (758)
-.+.......|+.++|...+++++++
T Consensus 45 l~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 45 LNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 33445556677777777777777765
No 411
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=42.81 E-value=44 Score=22.51 Aligned_cols=26 Identities=15% Similarity=0.334 Sum_probs=20.0
Q ss_pred HHHHHhhcCCCcHHHHHHHHHHHHhC
Q 004369 79 SLLQECVNRKSLSNAEIIHAHIVKTG 104 (758)
Q Consensus 79 ~ll~~~~~~~~~~~a~~~~~~~~~~g 104 (758)
.+..+|...|+.+.|+.+++.++..|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 35677888888888888888887654
No 412
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=41.88 E-value=1.7e+02 Score=23.25 Aligned_cols=39 Identities=8% Similarity=0.085 Sum_probs=31.0
Q ss_pred hcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHH
Q 004369 435 KCGRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQAL 474 (758)
Q Consensus 435 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 474 (758)
..|+.+.|.+++..+. +....|..++.++...|+-+-|.
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 4578888888888888 88888888888888887766554
No 413
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=41.78 E-value=1.7e+02 Score=28.88 Aligned_cols=59 Identities=24% Similarity=0.148 Sum_probs=48.8
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369 561 SVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTRE 619 (758)
Q Consensus 561 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 619 (758)
+.+=.++.+.++++.|..+.++.+.++|+|+.-..--+-+|.+.|...-|.+-.....+
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~ 243 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVE 243 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHH
Confidence 34455677888999999999999999999988888888899999998888887776544
No 414
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=41.70 E-value=59 Score=26.15 Aligned_cols=52 Identities=12% Similarity=0.153 Sum_probs=36.8
Q ss_pred HHcCChhHHHHHHHHHhccCCC----C-----chhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369 568 RRHGNMELGFYAAEQLLKLKPK----D-----CESYAMLLDIFVSAGRWEDVAVVKNLTRE 619 (758)
Q Consensus 568 ~~~g~~~~a~~~~~~~~~~~p~----~-----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 619 (758)
.+.||+..|.+.+.+.+..... . ......++.++...|++++|.+.+++..+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4567777777777776654321 1 23445678889999999999999988765
No 415
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=41.63 E-value=3.8e+02 Score=26.86 Aligned_cols=113 Identities=11% Similarity=0.017 Sum_probs=77.1
Q ss_pred CChHHHHHHHhccCC-----CCcchHHHHHHHHhh-CCC-hhhHHHHHHHHHH-CCCCCChhhHHHHHHHHcccCChHHH
Q 004369 224 GSLNSAIKAFNRIRE-----KNVMSWTTVIGACGE-NGE-AVQGLRFFSKMLS-EGIQPNEFTLTSISSVCGTMLSLRVG 295 (758)
Q Consensus 224 g~~~~A~~~f~~~~~-----~~~~~~~~li~~~~~-~g~-~~~A~~l~~~m~~-~g~~p~~~t~~~ll~~~~~~~~~~~a 295 (758)
..+-+|+++|+.... .|...-..+++.... .+. ...-.++.+-+.. .|-.++..+...++..++..+++..-
T Consensus 142 ~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl 221 (292)
T PF13929_consen 142 KIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKL 221 (292)
T ss_pred HHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHH
Confidence 345677777773322 244444444444443 111 1111222222222 34678888899999999999999999
Q ss_pred HHHHHHHHHh-CCCCchhHHHHHHHHHHhcCCHHHHHHHHcc
Q 004369 296 AQVHSLGIKL-GYASNLRVRNSIMYLYLKCGLVDEAQKLFDG 336 (758)
Q Consensus 296 ~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 336 (758)
.+++...... +...|...|..+|+...+.|+..-..++.++
T Consensus 222 ~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 222 FQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 9999988776 6788999999999999999999888887765
No 416
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=41.38 E-value=5.6e+02 Score=28.83 Aligned_cols=24 Identities=13% Similarity=0.141 Sum_probs=13.7
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHH
Q 004369 140 VVSWTSLISGYVQNSQPELAIHVFL 164 (758)
Q Consensus 140 ~~~~~~li~~~~~~g~~~~A~~~~~ 164 (758)
..-|+ .+..++-.|.+++|.+++.
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL~ 172 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLLR 172 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH-
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHHH
Confidence 33455 4666666677777777664
No 417
>PF13934 ELYS: Nuclear pore complex assembly
Probab=41.24 E-value=3.4e+02 Score=26.20 Aligned_cols=115 Identities=14% Similarity=0.113 Sum_probs=62.6
Q ss_pred hcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHH
Q 004369 435 KCGRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEM 514 (758)
Q Consensus 435 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 514 (758)
..+++++|.+.+-.-.-. ..-..-++.++...|+.+.|+.+++.+.-....+ .....++.+ ...+.+.+|+.+-+.
T Consensus 90 D~~~~~~A~~~L~~ps~~-~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~--~~~~~~~~~-La~~~v~EAf~~~R~ 165 (226)
T PF13934_consen 90 DHGDFEEALELLSHPSLI-PWFPDKILQALLRRGDPKLALRYLRAVGPPLSSP--EALTLYFVA-LANGLVTEAFSFQRS 165 (226)
T ss_pred ChHhHHHHHHHhCCCCCC-cccHHHHHHHHHHCCChhHHHHHHHhcCCCCCCH--HHHHHHHHH-HHcCCHHHHHHHHHh
Confidence 457777887777543211 1111237777787888998888888754322222 222222323 445788888877665
Q ss_pred hhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCH
Q 004369 515 MQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKMDFEPNE 557 (758)
Q Consensus 515 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~ 557 (758)
..+. -....+..++..+.....-....+.+-.+++.+..
T Consensus 166 ~~~~----~~~~l~e~l~~~~~~~~~~~~~~~~Ll~LPl~~~E 204 (226)
T PF13934_consen 166 YPDE----LRRRLFEQLLEHCLEECARSGRLDELLSLPLDEEE 204 (226)
T ss_pred Cchh----hhHHHHHHHHHHHHHHhhhhhHHHHHHhCCCChHH
Confidence 5431 11346666666666444323333444444655543
No 418
>PF15469 Sec5: Exocyst complex component Sec5
Probab=41.01 E-value=2.9e+02 Score=25.43 Aligned_cols=117 Identities=13% Similarity=0.200 Sum_probs=54.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCC-CHHHHHHHHHHHHH
Q 004369 459 SMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKP-VMDHYMCLIDMFVR 537 (758)
Q Consensus 459 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~ 537 (758)
.++..-.+......++.++++..- .+..-.-|.-|.+.|+++.+...|..+...++-.. ....+..+
T Consensus 62 pll~~~~k~~~l~~~l~~l~r~~f------lF~LP~~L~~~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~v------ 129 (182)
T PF15469_consen 62 PLLERREKADKLRNALEFLQRNRF------LFNLPSNLRECIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQKV------ 129 (182)
T ss_pred HHHccHHHHHHHHHHHHHHHHHHH------HHHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHHH------
Confidence 333333334444555555554432 22233445566777888888777777765322211 22222211
Q ss_pred cCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHH
Q 004369 538 LGCIEEAFDFIKKMDFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAML 597 (758)
Q Consensus 538 ~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 597 (758)
++++.++++... ...|..|.... ...++...+.+.+++++|++-.++..|
T Consensus 130 ---~~eve~ii~~~r----~~l~~~L~~~~---~s~~~~~~~i~~Ll~L~~~~dPi~~~l 179 (182)
T PF15469_consen 130 ---WSEVEKIIEEFR----EKLWEKLLSPP---SSQEEFLKLIRKLLELNVEEDPIWYWL 179 (182)
T ss_pred ---HHHHHHHHHHHH----HHHHHHHhCCC---CCHHHHHHHHHHHHhCCCCCCHHHHHH
Confidence 122222222220 11222222221 456667777778888877544444433
No 419
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=40.73 E-value=46 Score=24.35 Aligned_cols=23 Identities=13% Similarity=0.237 Sum_probs=10.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 004369 459 SMITGFANHSLSHQALQLFEDML 481 (758)
Q Consensus 459 ~li~~~~~~g~~~~A~~~~~~m~ 481 (758)
.+|.||.+.|++++|.++.+++.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 34455555555555555544443
No 420
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=40.54 E-value=37 Score=29.25 Aligned_cols=32 Identities=22% Similarity=0.425 Sum_probs=24.4
Q ss_pred hCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 004369 253 ENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVC 286 (758)
Q Consensus 253 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 286 (758)
..|.-.+|..+|++|+..|-+||. +..|+..+
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 356778899999999999999986 45555543
No 421
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.27 E-value=7e+02 Score=29.58 Aligned_cols=27 Identities=22% Similarity=0.452 Sum_probs=24.3
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHH
Q 004369 142 SWTSLISGYVQNSQPELAIHVFLDMLE 168 (758)
Q Consensus 142 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 168 (758)
-|..|+-.|...|+.++|++++.+...
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 388999999999999999999998865
No 422
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=39.95 E-value=2.4e+02 Score=24.16 Aligned_cols=59 Identities=12% Similarity=0.036 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHcCCCCCcchHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCCchhHHHHHH
Q 004369 57 LGFQEALSVLTEGPKVQTSSYVSLLQECVNRKSLSNAEIIHAHIVKTGSHQDFFVMTFLV 116 (758)
Q Consensus 57 ~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 116 (758)
+.-.-+..+..-++-|++-.....|++|.+.+++..|.++++-+... ..+.-.+|-.++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHH
Confidence 33344455566678888888889999999999999999998877532 122223454444
No 423
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.43 E-value=5.8e+02 Score=30.17 Aligned_cols=112 Identities=13% Similarity=0.080 Sum_probs=56.9
Q ss_pred HHHHHHHHhhcCCChHHHHHHHccCCCCC--cc-----hHHHHHHHHHhCCCc--hHHHHHHHHHHHcC----CC--CC-
Q 004369 111 VMTFLVNVYGKCGNMEEAQKVFDNLPRIN--VV-----SWTSLISGYVQNSQP--ELAIHVFLDMLEAG----NY--PT- 174 (758)
Q Consensus 111 ~~~~li~~~~~~g~~~~A~~~f~~~~~~~--~~-----~~~~li~~~~~~g~~--~~A~~~~~~m~~~g----~~--p~- 174 (758)
-|..|+..|...|..++|.+++......+ .. .+.-++.-+...+.. +-.++.-....... ++ -+
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 36677778888888888888876665321 11 122233333222322 33333333222211 00 00
Q ss_pred ------hhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHhhc
Q 004369 175 ------NVTLGTALTACSSLESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTC 223 (758)
Q Consensus 175 ------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~ 223 (758)
...-.- +-.+......+.....+++++...-..+....+.++..|.+.
T Consensus 586 ~~~~~~sis~~~-Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~ 639 (877)
T KOG2063|consen 586 DKQEAESISRDD-VLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEK 639 (877)
T ss_pred ChhhhccCCHHH-HHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHH
Confidence 000111 122344556667777788877766666777777777777653
No 424
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=38.86 E-value=37 Score=29.25 Aligned_cols=31 Identities=16% Similarity=0.222 Sum_probs=22.6
Q ss_pred CCchhHHHHHHHHHHHcCCCCCcchHHHHHHHh
Q 004369 52 EPVRSLGFQEALSVLTEGPKVQTSSYVSLLQEC 84 (758)
Q Consensus 52 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~ 84 (758)
.|.-.+|-.+|..|+..|-+|| .|+.|+..+
T Consensus 108 ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 3445678888888888887777 477777664
No 425
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=38.78 E-value=60 Score=32.41 Aligned_cols=41 Identities=17% Similarity=0.291 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004369 456 SWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGAL 496 (758)
Q Consensus 456 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 496 (758)
-||..|....+.|++++|+.+++|..+.|+.--..||...+
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 47788999999999999999999999998876666665544
No 426
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=38.06 E-value=3.7e+02 Score=26.09 Aligned_cols=81 Identities=12% Similarity=-0.068 Sum_probs=48.5
Q ss_pred HHhcCCHHHHHHHHHhcC--CCCh-hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHhccccHHHH
Q 004369 433 YKKCGRIERASRVFVEMS--TRTL-ISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFV-GALAACSNAGMVYEA 508 (758)
Q Consensus 433 y~~~g~~~~A~~~~~~~~--~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~a~~~~g~~~~a 508 (758)
|....+++.|...+.+.. .|.+ .-|+.-+..+.+..+++.+.+--++.++ +.||.+--. .+..+......+++|
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHH
Confidence 444556677777666544 4444 3456666677777777777766666665 566655332 333345556667777
Q ss_pred HHHHHHh
Q 004369 509 LGYFEMM 515 (758)
Q Consensus 509 ~~~~~~~ 515 (758)
+..+.+.
T Consensus 98 I~~Lqra 104 (284)
T KOG4642|consen 98 IKVLQRA 104 (284)
T ss_pred HHHHHHH
Confidence 7766665
No 427
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=37.81 E-value=2.4e+02 Score=25.98 Aligned_cols=28 Identities=18% Similarity=0.341 Sum_probs=19.6
Q ss_pred HHHHHHHcCChhHHHHHHHHHhccCCCCc
Q 004369 563 FIAGCRRHGNMELGFYAAEQLLKLKPKDC 591 (758)
Q Consensus 563 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 591 (758)
.+..|.+.|.+++|.+++++..+ +|++.
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~ 144 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS-DPESQ 144 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc-CCCch
Confidence 34567777888888888877777 66543
No 428
>PHA03100 ankyrin repeat protein; Provisional
Probab=37.24 E-value=5.8e+02 Score=27.78 Aligned_cols=14 Identities=21% Similarity=0.332 Sum_probs=7.6
Q ss_pred cCCChHHHHHHHcc
Q 004369 121 KCGNMEEAQKVFDN 134 (758)
Q Consensus 121 ~~g~~~~A~~~f~~ 134 (758)
+.|+.+-+..+++.
T Consensus 117 ~~~~~~iv~~Ll~~ 130 (480)
T PHA03100 117 KSNSYSIVEYLLDN 130 (480)
T ss_pred ccChHHHHHHHHHc
Confidence 55555555555544
No 429
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=36.45 E-value=1.8e+02 Score=24.18 Aligned_cols=40 Identities=15% Similarity=0.337 Sum_probs=30.4
Q ss_pred ChHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHH
Q 004369 124 NMEEAQKVFDNLPRINVVSWTSLISGYVQNSQPELAIHVFLDMLE 168 (758)
Q Consensus 124 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 168 (758)
+++++.+.+.+-. -|..|+.-|-..|..++|++++.+...
T Consensus 28 ~~~~~e~~L~~~~-----~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 28 DLEEVEEVLKEHG-----KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHHcC-----CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3445555443322 499999999999999999999998876
No 430
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=35.18 E-value=2.4e+02 Score=24.21 Aligned_cols=59 Identities=12% Similarity=0.117 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCHHHH-HHHHHHHHHcCChhHHHHHHHHH
Q 004369 525 MDHYMCLIDMFVRLGCIEEAFDFIKKMDFEPNEVIW-SVFIAGCRRHGNMELGFYAAEQL 583 (758)
Q Consensus 525 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~-~~ll~~~~~~g~~~~a~~~~~~~ 583 (758)
..+..++.-++.-.|..++|.++++..+.-++-... .-++..|+...+-++..++-++.
T Consensus 66 LscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~~ 125 (127)
T PF04034_consen 66 LSCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNEY 125 (127)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 344556666777777777777777777554444333 34666776666665555544443
No 431
>PF15161 Neuropep_like: Neuropeptide-like
Probab=33.93 E-value=27 Score=24.36 Aligned_cols=16 Identities=31% Similarity=0.793 Sum_probs=11.8
Q ss_pred ccccCCchhHHHHHHhh
Q 004369 711 STTMCRDCHNFIKIITS 727 (758)
Q Consensus 711 n~~~~~~~~~~~~~~s~ 727 (758)
-.|-|.|||.+. |+.+
T Consensus 12 esRPCVDCHAFe-fmqR 27 (65)
T PF15161_consen 12 ESRPCVDCHAFE-FMQR 27 (65)
T ss_pred CCCCchhhHHHH-HHHH
Confidence 458899999765 6654
No 432
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=33.65 E-value=5e+02 Score=25.95 Aligned_cols=98 Identities=12% Similarity=-0.044 Sum_probs=46.5
Q ss_pred cHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcC-------CHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCC
Q 004369 504 MVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLG-------CIEEAFDFIKKMDFEPNEVIWSVFIAGCRR----HGN 572 (758)
Q Consensus 504 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~ 572 (758)
+..+|..++..+.+. |..+.......+...|.... +...|...+.++-..-+......|...|.. ..|
T Consensus 128 d~~~A~~~~~~Aa~~-g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d 206 (292)
T COG0790 128 DLVKALKYYEKAAKL-GNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRD 206 (292)
T ss_pred CHHHHHHHHHHHHHc-CChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcC
Confidence 556666666666552 43332122233333333321 223566666666111133333333322221 236
Q ss_pred hhHHHHHHHHHhccCCCCchhHHHHHHHhhhCC
Q 004369 573 MELGFYAAEQLLKLKPKDCESYAMLLDIFVSAG 605 (758)
Q Consensus 573 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 605 (758)
.++|...++++-+.+. ......++ .+...|
T Consensus 207 ~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 207 LKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred HHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 7777777777777766 34455555 444444
No 433
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=33.61 E-value=1.2e+02 Score=20.73 Aligned_cols=33 Identities=9% Similarity=-0.028 Sum_probs=19.3
Q ss_pred HhCCCchHHHHHHHHHHHcCCCCChhhHHHHHH
Q 004369 151 VQNSQPELAIHVFLDMLEAGNYPTNVTLGTALT 183 (758)
Q Consensus 151 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 183 (758)
.+.|-..++..++++|.+.|+.-+...+..+++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 355556666666666666666555555554443
No 434
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=33.40 E-value=6e+02 Score=26.80 Aligned_cols=60 Identities=13% Similarity=0.106 Sum_probs=43.6
Q ss_pred HHHHhHHhhhHHhcCCHHHHHHHHHhcCCC------ChhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004369 423 VVVGTALVNMYKKCGRIERASRVFVEMSTR------TLISWTSMITGFANHSLSHQALQLFEDMLL 482 (758)
Q Consensus 423 ~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 482 (758)
...+.-+.+-|..||+++.|.+.+.+..+- -+..|-.+|..-.-.|+|........+...
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 346778889999999999999999885521 224566666666667777777777766654
No 435
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=33.23 E-value=86 Score=22.93 Aligned_cols=30 Identities=17% Similarity=0.206 Sum_probs=16.8
Q ss_pred CHHHHHHHHHHHhccccHHHHHHHHHHhhh
Q 004369 488 NQVTFVGALAACSNAGMVYEALGYFEMMQK 517 (758)
Q Consensus 488 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 517 (758)
|..--..++.++...|++++|.++.+.+.+
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 333444556666666666666666666544
No 436
>PRK13342 recombination factor protein RarA; Reviewed
Probab=33.16 E-value=6.3e+02 Score=27.01 Aligned_cols=114 Identities=12% Similarity=0.072 Sum_probs=59.3
Q ss_pred hHHHHHHHHhHh---CCC-CCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHH
Q 004369 370 TEALSIFSKLNS---SGM-KPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRV 445 (758)
Q Consensus 370 ~~A~~l~~~m~~---~g~-~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~ 445 (758)
++...+++.... .|+ ..+......++..+ .|+...+..+++.+...+... ..+...++
T Consensus 154 e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~I----------------t~~~v~~~ 215 (413)
T PRK13342 154 EDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDSI----------------TLELLEEA 215 (413)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCC----------------CHHHHHHH
Confidence 444555554432 133 44555555554443 577777777666554331111 12222222
Q ss_pred HHhc---CCCChhHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 004369 446 FVEM---STRTLISWTSMITGFAN---HSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSN 501 (758)
Q Consensus 446 ~~~~---~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 501 (758)
+... ..++...+..+++++.+ .++.+.|+..+.+|.+.|..|..+.-..+..++..
T Consensus 216 ~~~~~~~~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ed 277 (413)
T PRK13342 216 LQKRAARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASED 277 (413)
T ss_pred HhhhhhccCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 2221 12222334445555554 47889999999999998888876554444444433
No 437
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=33.12 E-value=73 Score=31.66 Aligned_cols=51 Identities=14% Similarity=0.109 Sum_probs=41.7
Q ss_pred HHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHh
Q 004369 567 CRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLT 617 (758)
Q Consensus 567 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 617 (758)
..+.|+.|.|..+++.++.+.|+++.....++...-...++-+|.+.+-+.
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~A 176 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKA 176 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhhee
Confidence 457899999999999999999999999888887777666776776665443
No 438
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=32.85 E-value=9.5e+02 Score=28.95 Aligned_cols=254 Identities=8% Similarity=-0.063 Sum_probs=134.7
Q ss_pred HHHhccCCCCcchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHHHHHHHHHHHhCCCCc
Q 004369 231 KAFNRIREKNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYASN 310 (758)
Q Consensus 231 ~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 310 (758)
.+...+..+|...--..+..+.+.+. +++...+.+..+. +|...=...+.++...+........+..+++ .+|
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~-~~~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~---~~d 697 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTP-PGFGPALVAALGD---GAAAVRRAAAEGLRELVEVLPPAPALRDHLG---SPD 697 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcc-hhHHHHHHHHHcC---CCHHHHHHHHHHHHHHHhccCchHHHHHHhc---CCC
Confidence 44444455666666666666666654 3355555555432 3333333444444333221111122222222 256
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHccCCCCCeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCHHH
Q 004369 311 LRVRNSIMYLYLKCGLVDEAQKLFDGMSHVNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYT 390 (758)
Q Consensus 311 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t 390 (758)
..+..+.++.+...+.- ....+...+.++|...-...+.++.+ .+..+. +.... -.++...
T Consensus 698 ~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~-----------~~~~~~----l~~~l---~D~~~~V 758 (897)
T PRK13800 698 PVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVS-----------VDDVES----VAGAA---TDENREV 758 (897)
T ss_pred HHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhc-----------ccCcHH----HHHHh---cCCCHHH
Confidence 66666666666654321 12334455556666555555565555 333222 11222 2345555
Q ss_pred HHHHHHHHhcccchHH-HHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHH-HHHHhcCCCChhHHHHHHHHHHhcC
Q 004369 391 FSSILTICSRLVALEQ-GEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERAS-RVFVEMSTRTLISWTSMITGFANHS 468 (758)
Q Consensus 391 ~~~ll~a~~~~~~~~~-a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~-~~~~~~~~~~~~~~~~li~~~~~~g 468 (758)
-.....++...+..+. +...+..+.+ .+|..+-.+.+..+.+.|..+.+. .+...+..+|...-...+.++...+
T Consensus 759 R~~aa~aL~~~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~ 835 (897)
T PRK13800 759 RIAVAKGLATLGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAA 835 (897)
T ss_pred HHHHHHHHHHhccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhcc
Confidence 5555666666554332 2233333332 456777788888888888765553 3444455666655566677777776
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhh
Q 004369 469 LSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQK 517 (758)
Q Consensus 469 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 517 (758)
. +++...+-.+.+ .|+...-...+.++.+...-..+...+..+.+
T Consensus 836 ~-~~a~~~L~~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 836 A-DVAVPALVEALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred c-cchHHHHHHHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 5 456677666664 56766666777777775434466666666655
No 439
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=32.82 E-value=68 Score=32.04 Aligned_cols=39 Identities=15% Similarity=0.234 Sum_probs=31.6
Q ss_pred hHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhHHH
Q 004369 243 SWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTS 281 (758)
Q Consensus 243 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 281 (758)
-||..|..-.+.|++++|+.++++..+.|+.--..||..
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 477889999999999999999999999887655555543
No 440
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=32.72 E-value=4.1e+02 Score=24.74 Aligned_cols=92 Identities=5% Similarity=0.069 Sum_probs=56.3
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhc----------
Q 004369 450 STRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEY---------- 519 (758)
Q Consensus 450 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---------- 519 (758)
+++..+.|-....+-++.-+.+++-+.| =..+-.+++..|-+.-++.+++++++.|.+..
T Consensus 103 Kdk~~vPFceFAetV~k~~q~~e~dK~~----------LGRiGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~ 172 (233)
T PF14669_consen 103 KDKPGVPFCEFAETVCKDPQNDEVDKTL----------LGRIGISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLT 172 (233)
T ss_pred cccCCCCHHHHHHHHhcCCccchhhhhh----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCcc
Confidence 3444455655555555544443332221 11223456667888888999998888876510
Q ss_pred ---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 004369 520 ---KIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM 551 (758)
Q Consensus 520 ---~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 551 (758)
+..+.-...|.-...+.+.|.+|-|+.++++-
T Consensus 173 g~e~~asrCqivn~AaEiFL~sgsidGA~~vLres 207 (233)
T PF14669_consen 173 GPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRES 207 (233)
T ss_pred CccccCchhhhHHHHHHHHHHcCCchHHHHHHhcc
Confidence 11233355667778888999999999888875
No 441
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=32.41 E-value=1.7e+02 Score=20.08 Aligned_cols=33 Identities=18% Similarity=0.206 Sum_probs=21.4
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004369 465 ANHSLSHQALQLFEDMLLAGVRPNQVTFVGALA 497 (758)
Q Consensus 465 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 497 (758)
.+.|-..++..++++|.+.|+.-+...+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 445666677777777777776666666655553
No 442
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=30.87 E-value=1.3e+02 Score=23.72 Aligned_cols=62 Identities=13% Similarity=0.290 Sum_probs=41.3
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHhhcCCChHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHH
Q 004369 94 EIIHAHIVKTGSHQDFFVMTFLVNVYGKCGNMEEAQKVFDNLPRINVVSWTSLISGYVQNSQPELA 159 (758)
Q Consensus 94 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 159 (758)
..++..+.+.|+- +....-...+...+.+.|.++++.++.++..+|.++..++-..|...-|
T Consensus 19 ~~v~~~L~~~~Vl----t~~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 19 KYLWDHLLSRGVF----TPDMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHhcCCC----CHHHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 3466666666632 2222223334556788888899999988888888888888777755443
No 443
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.54 E-value=5.8e+02 Score=28.64 Aligned_cols=60 Identities=5% Similarity=0.053 Sum_probs=35.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369 560 WSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTRE 619 (758)
Q Consensus 560 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 619 (758)
...|--.|....+.+.|.++++++-+.+|.++..-..+..+....|+-++|..+......
T Consensus 397 qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 397 QRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKS 456 (872)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence 344444444555666666666666666666655555566666666666666666555544
No 444
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=30.50 E-value=4.6e+02 Score=25.15 Aligned_cols=53 Identities=23% Similarity=0.417 Sum_probs=26.9
Q ss_pred HHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHH-----HHHHHHHHcCCHHHHHHHHHH
Q 004369 496 LAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYM-----CLIDMFVRLGCIEEAFDFIKK 550 (758)
Q Consensus 496 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~ 550 (758)
+......|++++|.+....+... -+..|.+.+- .+|. +.|.|..++|+++.+.
T Consensus 71 Ir~~I~~G~Ie~Aie~in~l~Pe-iLd~n~~l~F~Lq~q~lIE-liR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 71 IRRAIEEGQIEEAIEKVNQLNPE-ILDTNRELFFHLQQLHLIE-LIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHhccHHHHHHHHHHhChH-HHccchhHHHHHHHHHHHH-HHHhhhHHHHHHHHHH
Confidence 33445566666666666555332 2223321111 1222 3567777777777765
No 445
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=30.39 E-value=5.1e+02 Score=25.07 Aligned_cols=53 Identities=13% Similarity=0.222 Sum_probs=31.8
Q ss_pred HHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004369 445 VFVEMSTRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAAC 499 (758)
Q Consensus 445 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 499 (758)
+|+-..+|.+.....|+..+. .++.++|.+++.++.+.|..|.... +.+.+++
T Consensus 230 VfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Dii-~~~FRv~ 282 (333)
T KOG0991|consen 230 VFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDII-TTLFRVV 282 (333)
T ss_pred hhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHHH-HHHHHHH
Confidence 344444555555566665443 4667888888888888887776443 3344443
No 446
>PRK13342 recombination factor protein RarA; Reviewed
Probab=30.11 E-value=7.1e+02 Score=26.63 Aligned_cols=36 Identities=11% Similarity=0.197 Sum_probs=27.2
Q ss_pred CCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHhcc
Q 004369 366 HNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRL 401 (758)
Q Consensus 366 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 401 (758)
.++.+.|+..+..|.+.|..|....-..+..++...
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edi 278 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDI 278 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhh
Confidence 578899999999999999888766655555554443
No 447
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=29.93 E-value=4.6e+02 Score=24.45 Aligned_cols=50 Identities=22% Similarity=0.294 Sum_probs=26.7
Q ss_pred HhcCCHHHHHHHHHhcCC------CChhHHHHHHH-HHHhcCC--HHHHHHHHHHHHHc
Q 004369 434 KKCGRIERASRVFVEMST------RTLISWTSMIT-GFANHSL--SHQALQLFEDMLLA 483 (758)
Q Consensus 434 ~~~g~~~~A~~~~~~~~~------~~~~~~~~li~-~~~~~g~--~~~A~~~~~~m~~~ 483 (758)
...|++++|.+-++++.+ +-...|..+.. +|+.++. +-+|.-++.-....
T Consensus 40 ~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~ 98 (204)
T COG2178 40 LHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDG 98 (204)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcC
Confidence 345666666666665542 12334555554 5666554 45565555555443
No 448
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=29.89 E-value=6.9e+02 Score=26.40 Aligned_cols=27 Identities=4% Similarity=-0.087 Sum_probs=18.9
Q ss_pred HHHHHHHHHhcccchHHHHHHHHHHHH
Q 004369 390 TFSSILTICSRLVALEQGEQIHALTLK 416 (758)
Q Consensus 390 t~~~ll~a~~~~~~~~~a~~i~~~~~~ 416 (758)
.+.-+..-|...|+++.|.+.+..+.+
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~Rd 178 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARD 178 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhh
Confidence 455566667777888888888777544
No 449
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=29.61 E-value=4.8e+02 Score=24.53 Aligned_cols=30 Identities=13% Similarity=0.038 Sum_probs=25.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004369 454 LISWTSMITGFANHSLSHQALQLFEDMLLA 483 (758)
Q Consensus 454 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 483 (758)
+...+.++..+...|+++.|-+.|.-+...
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR~ 70 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIRC 70 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHcC
Confidence 346778888899999999999999998875
No 450
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=29.29 E-value=1.5e+03 Score=30.19 Aligned_cols=124 Identities=10% Similarity=0.070 Sum_probs=65.1
Q ss_pred HHHHHhhcCChHHHHHHHhc-cCCCCcchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCC-hhhHHHHHHHHcccCChH
Q 004369 216 LCSLYSTCGSLNSAIKAFNR-IREKNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPN-EFTLTSISSVCGTMLSLR 293 (758)
Q Consensus 216 Li~~y~~~g~~~~A~~~f~~-~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~ 293 (758)
|...|+.-+++|....+... ...++ ...-|--....|++..|...|+.+...+ |+ ..+++.++...-..+.++
T Consensus 1426 lq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~~~da~~Cye~~~q~~--p~~~~~~~g~l~sml~~~~l~ 1500 (2382)
T KOG0890|consen 1426 LQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGNWADAAACYERLIQKD--PDKEKHHSGVLKSMLAIQHLS 1500 (2382)
T ss_pred HHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhccHHHHHHHHHHhhcCC--CccccchhhHHHhhhcccchh
Confidence 33466666666665555542 22222 2223344556788888888888877643 44 556666666555555555
Q ss_pred HHHHHHHHHHHhCCCCchhHH-HHHHHHHHhcCCHHHHHHHHccCCCCCeeechhH
Q 004369 294 VGAQVHSLGIKLGYASNLRVR-NSIMYLYLKCGLVDEAQKLFDGMSHVNLVTWNAM 348 (758)
Q Consensus 294 ~a~~~~~~~~~~g~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~l 348 (758)
...-..+..... ..+...-+ +.=+.+-.+.++++....... .++..+|.+.
T Consensus 1501 t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l~---~~n~e~w~~~ 1552 (2382)
T KOG0890|consen 1501 TEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYLS---DRNIEYWSVE 1552 (2382)
T ss_pred HHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhhh---cccccchhHH
Confidence 544422222211 12222222 222333356667776666655 5666777766
No 451
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=28.53 E-value=2.2e+02 Score=31.12 Aligned_cols=57 Identities=12% Similarity=0.184 Sum_probs=35.4
Q ss_pred HHHHHHhhcCCChHHHHHHHccCCCC--Ccc---hHHHHHHHHHhCCCchHHHHHHHHHHHc
Q 004369 113 TFLVNVYGKCGNMEEAQKVFDNLPRI--NVV---SWTSLISGYVQNSQPELAIHVFLDMLEA 169 (758)
Q Consensus 113 ~~li~~~~~~g~~~~A~~~f~~~~~~--~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~ 169 (758)
..|+.-|.+++++++|..++..|.-. ... +.+.+.+.+.+..--.+....++.+...
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algs 473 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGS 473 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhh
Confidence 35777899999999999999988621 122 2333444445554445555555555543
No 452
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=27.88 E-value=1e+02 Score=29.44 Aligned_cols=56 Identities=20% Similarity=0.151 Sum_probs=50.4
Q ss_pred HHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhhCCC
Q 004369 567 CRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREEKL 622 (758)
Q Consensus 567 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 622 (758)
..+.+|.+.+.+++.+++++-|+....|..++..--+.|+++.|.+.+++..+.+.
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp 60 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDP 60 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCc
Confidence 34678999999999999999999999999999999999999999999998877543
No 453
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=27.84 E-value=2.8e+02 Score=23.58 Aligned_cols=64 Identities=13% Similarity=0.126 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHhc-------cCCCCchhHH----HHHHHhhhCCCchhHHHHHHHhhh
Q 004369 556 NEVIWSVFIAGCRRHGNMELGFYAAEQLLK-------LKPKDCESYA----MLLDIFVSAGRWEDVAVVKNLTRE 619 (758)
Q Consensus 556 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-------~~p~~~~~~~----~l~~~~~~~g~~~~a~~~~~~m~~ 619 (758)
|...+..|-.++...|++++++...++.+. ++.+....|. .-+.++...|+.++|.+.|++.-+
T Consensus 54 DA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 54 DAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
No 454
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=27.46 E-value=3.6e+02 Score=24.93 Aligned_cols=65 Identities=15% Similarity=0.191 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhhhhcCCCCC-HHH-----HHHHHHHHHHcCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 004369 505 VYEALGYFEMMQKEYKIKPV-MDH-----YMCLIDMFVRLGCIEEAFDFIKKMDFEPNEVIWSVFIAGCRR 569 (758)
Q Consensus 505 ~~~a~~~~~~~~~~~~~~p~-~~~-----~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~ 569 (758)
++.|..+++.+.+....+-+ .+. --..+-.|.+.|.+++|.+++++.--.|+......-+....+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d~~~~~~r~kL~~II~ 155 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSDPESQKLRMKLLMIIR 155 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcCCCchhHHHHHHHHHH
Confidence 45566666666554221100 011 123345677888888888888877325555444444443333
No 455
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=27.17 E-value=3.6e+02 Score=23.10 Aligned_cols=43 Identities=12% Similarity=0.250 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHcCCCCh-HHHHhHHhhhHHhcCCHHHHHHHHHh
Q 004369 406 QGEQIHALTLKTGFLSD-VVVGTALVNMYKKCGRIERASRVFVE 448 (758)
Q Consensus 406 ~a~~i~~~~~~~~~~~~-~~~~~~Li~~y~~~g~~~~A~~~~~~ 448 (758)
.+.++|..|...|+-.. ...|..-...+.+.|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 78888888888776544 55677777778888888888888764
No 456
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=26.93 E-value=8.4e+02 Score=26.47 Aligned_cols=321 Identities=10% Similarity=0.032 Sum_probs=0.0
Q ss_pred HHcCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHhhcCChHHHHHHHhccC---------
Q 004369 167 LEAGNYPTNVTLGTALTACSSLESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGSLNSAIKAFNRIR--------- 237 (758)
Q Consensus 167 ~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~--------- 237 (758)
+..+..............-...+.++...++...+...|.....+.+|.-+..|.+.|....-..+=+...
T Consensus 9 ktq~~~d~~~~l~~~a~~~f~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~~~ll~el~aL~~~~~~~~ 88 (696)
T KOG2471|consen 9 KTQAGEDENYSLLCQAHEQFNNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQHSVLLKELEALTADADAPG 88 (696)
T ss_pred ccccccchhHHHHHHHHhccCCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchhHHHHHHHHHHHHhhcccc
Q ss_pred --------CCCcchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHHHHHHHHHHHhCCCC
Q 004369 238 --------EKNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYAS 309 (758)
Q Consensus 238 --------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 309 (758)
..+.+.+....-+|.....+.+|+++...+... +.|=...+.....
T Consensus 89 ~~~~gld~~~~t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r-~e~le~~~aa~v~------------------------- 142 (696)
T KOG2471|consen 89 DVSSGLSLKQGTVMDYNFAVIFYHHEENGSAMQLSSNLVSR-TESLESSSAASVT------------------------- 142 (696)
T ss_pred chhcchhhhcchHHhhhhheeeeeHhhcchHHHhhhhHHHH-HHHHHHHHHHHHH-------------------------
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHccCCC------CCeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCC
Q 004369 310 NLRVRNSIMYLYLKCGLVDEAQKLFDGMSH------VNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSG 383 (758)
Q Consensus 310 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~------~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g 383 (758)
......|....+.++|..+++-+.+ .+.+.-+.--....+ .+....|..-|.-.
T Consensus 143 -----~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~~gn~~~~nn~~k-----------t~s~~aAe~s~~~a---- 202 (696)
T KOG2471|consen 143 -----LLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKLVGNHIPANNLLK-----------TLSPSAAERSFSTA---- 202 (696)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhcc-----------cCCcchhcccchhh----
Q ss_pred CCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCCC-----------
Q 004369 384 MKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMSTR----------- 452 (758)
Q Consensus 384 ~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~----------- 452 (758)
.|....-..-++++.+..++..++.-...+.... ..+....-.--..+--.|++.+|.+++....-.
T Consensus 203 -~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a-~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~ 280 (696)
T KOG2471|consen 203 -DLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIA-QDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQL 280 (696)
T ss_pred -ccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhc-CCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchh
Q ss_pred -ChhHHHHHHHHHHhcCCHHHHHHHHHHHHH-------cCCCCCH-----------HHHHHHHHHHhccccHHHHHHHHH
Q 004369 453 -TLISWTSMITGFANHSLSHQALQLFEDMLL-------AGVRPNQ-----------VTFVGALAACSNAGMVYEALGYFE 513 (758)
Q Consensus 453 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------~g~~p~~-----------~t~~~ll~a~~~~g~~~~a~~~~~ 513 (758)
....||.|...+.+.|.+.-+..+|.+..+ .|++|.. .+|+.=+ .+.+.|++-.|.+.|.
T Consensus 281 ~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~-~~Lh~grPl~AfqCf~ 359 (696)
T KOG2471|consen 281 SSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGL-LYLHSGRPLLAFQCFQ 359 (696)
T ss_pred hhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhH-HHHhcCCcHHHHHHHH
Q ss_pred HhhhhcCCCCCHHHHHHHHHHHHHc
Q 004369 514 MMQKEYKIKPVMDHYMCLIDMFVRL 538 (758)
Q Consensus 514 ~~~~~~~~~p~~~~~~~li~~~~~~ 538 (758)
.....+.-.| ..|--|..++...
T Consensus 360 ~av~vfh~nP--rlWLRlAEcCima 382 (696)
T KOG2471|consen 360 KAVHVFHRNP--RLWLRLAECCIMA 382 (696)
T ss_pred HHHHHHhcCc--HHHHHHHHHHHHH
No 457
>PRK14700 recombination factor protein RarA; Provisional
Probab=26.91 E-value=5.3e+02 Score=26.04 Aligned_cols=50 Identities=8% Similarity=0.087 Sum_probs=38.1
Q ss_pred hhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHhcccc
Q 004369 346 NAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVA 403 (758)
Q Consensus 346 ~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 403 (758)
--+|+++.++.+ ..+++.|+-.+-+|.+.|-.|....-..++.|....|.
T Consensus 127 Yd~iSAf~KSiR--------GSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGl 176 (300)
T PRK14700 127 YEQLSAFHKSVR--------GTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGN 176 (300)
T ss_pred HHHHHHHHHHhh--------cCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 335666666322 77889999999999999998888887777777766663
No 458
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.76 E-value=1.2e+03 Score=28.37 Aligned_cols=106 Identities=15% Similarity=0.155 Sum_probs=63.0
Q ss_pred HhhhHHhcCCHHHHHHHHHhcCC-------------------C-----------C--hhHHHHHHHHHHhcCCHHHHHHH
Q 004369 429 LVNMYKKCGRIERASRVFVEMST-------------------R-----------T--LISWTSMITGFANHSLSHQALQL 476 (758)
Q Consensus 429 Li~~y~~~g~~~~A~~~~~~~~~-------------------~-----------~--~~~~~~li~~~~~~g~~~~A~~~ 476 (758)
+..+|..+|...+|...|.+... + . ..-|...+.-+-+++..+++.++
T Consensus 926 lg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQl 1005 (1480)
T KOG4521|consen 926 LGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQL 1005 (1480)
T ss_pred hheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 44457788999999998876541 0 0 12345566777777777777777
Q ss_pred HHHHHHcCCCCC----HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCH----HHHHHHHHHHHHcCCHH
Q 004369 477 FEDMLLAGVRPN----QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVM----DHYMCLIDMFVRLGCIE 542 (758)
Q Consensus 477 ~~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~ 542 (758)
-...++. +.|| ..+++.+.+-....|.+-+|...+- . .||. .....++-.+..+|+++
T Consensus 1006 A~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~---~----npdserrrdcLRqlvivLfecg~l~ 1071 (1480)
T KOG4521|consen 1006 AVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAIL---R----NPDSERRRDCLRQLVIVLFECGELE 1071 (1480)
T ss_pred HHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHH---c----CCcHHHHHHHHHHHHHHHHhccchH
Confidence 7666664 3333 3345556666666666666654432 2 1332 23455666666776654
No 459
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=25.98 E-value=2.1e+02 Score=31.41 Aligned_cols=133 Identities=11% Similarity=0.019 Sum_probs=89.0
Q ss_pred CCCHHHHHHHHHHHhcc--ccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHc-CCCC--CHHH
Q 004369 486 RPNQVTFVGALAACSNA--GMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVR-LGCIEEAFDFIKKM-DFEP--NEVI 559 (758)
Q Consensus 486 ~p~~~t~~~ll~a~~~~--g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m-~~~p--~~~~ 559 (758)
-|+..+...++.-...- ..-+-|-.++..|.+ .+.|-=... .+...|.| .|+...|.+.+..+ ..+| ..+.
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~--~~~p~w~~l-n~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~ 644 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINK--PNAPIWLIL-NEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVP 644 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC--CCCCeEEEe-ecccceeeecCCcHHHHHHHHHHhccChhhhccc
Confidence 46666655555433321 223445566666643 333421111 12334443 57888898888776 4444 2344
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhhCC
Q 004369 560 WSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREEK 621 (758)
Q Consensus 560 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 621 (758)
...|.....+.|-.-.|-..+.+.+.+.-..|-++..++++|....+.+.|.+.++...+..
T Consensus 645 ~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~ 706 (886)
T KOG4507|consen 645 LVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLT 706 (886)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC
Confidence 55677777777877889999999999988888999999999999999999999998876643
No 460
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.40 E-value=9.8e+02 Score=28.14 Aligned_cols=130 Identities=13% Similarity=0.102 Sum_probs=87.0
Q ss_pred hHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHH
Q 004369 432 MYKKCGRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGY 511 (758)
Q Consensus 432 ~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 511 (758)
....||+++.|.+.-.++. |...|..|+..-...|+.+-|...|++.+. |..|---|.-.|+.++-.++
T Consensus 652 LaLe~gnle~ale~akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km 720 (1202)
T KOG0292|consen 652 LALECGNLEVALEAAKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKM 720 (1202)
T ss_pred eehhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHH
Confidence 3457899999998776665 455899999999999999999999888654 22232335567888887766
Q ss_pred HHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhc
Q 004369 512 FEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKMDFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLK 585 (758)
Q Consensus 512 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 585 (758)
.+-+.. ..|... ....-.-.|++++=.++++..+..|-.. + .-..+|.-++|+++.++.-.
T Consensus 721 ~~iae~----r~D~~~---~~qnalYl~dv~ervkIl~n~g~~~lay-----l-ta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 721 MKIAEI----RNDATG---QFQNALYLGDVKERVKILENGGQLPLAY-----L-TAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred HHHHHh----hhhhHH---HHHHHHHhccHHHHHHHHHhcCcccHHH-----H-HHhhcCcHHHHHHHHHhhcc
Confidence 655533 222211 1111123588899999998887654322 1 12457888889888888765
No 461
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=25.36 E-value=3.4e+02 Score=21.45 Aligned_cols=42 Identities=12% Similarity=0.112 Sum_probs=32.3
Q ss_pred HHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcC
Q 004369 409 QIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMS 450 (758)
Q Consensus 409 ~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~ 450 (758)
++|+.....|+..|..+|..+++...-+=-.+...++++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 778888888888888888888887776666666666666654
No 462
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=25.32 E-value=4.4e+02 Score=22.61 Aligned_cols=42 Identities=10% Similarity=0.145 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccccHHHHHHHHH
Q 004369 472 QALQLFEDMLLAGVRPN-QVTFVGALAACSNAGMVYEALGYFE 513 (758)
Q Consensus 472 ~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~ 513 (758)
.+.++|+.|...|+--. +.-|......+...|++++|.++|+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55555555555554433 3334444444455555555555554
No 463
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=25.26 E-value=1.2e+03 Score=27.81 Aligned_cols=149 Identities=12% Similarity=0.072 Sum_probs=77.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHH
Q 004369 458 TSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVR 537 (758)
Q Consensus 458 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 537 (758)
|..+.-++..+..+......++..... |..--.+.+.++.+.+. .+....++..-+++.-.|- +.+.....-+.
T Consensus 676 n~~l~~l~~~~~~~~~~~~~~~~~~a~---~mtd~~~al~~l~~~~~-~~~~~~l~~f~~~~~~~~l--v~~kwf~~qa~ 749 (863)
T TIGR02414 676 NACLSYLSAADDAEIRNLALEQFKSAD---NMTDRLAALSALVHFES-DFRERALAAFYQKWKDDPL--VMDKWFALQAT 749 (863)
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHhCC---CHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHHCCCch--hHHHHHHHHhC
Confidence 444555555554433333344444332 22222334444443333 2323334444333333343 22222222222
Q ss_pred cCCHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCC------hhHH-HHHHHHHhccCCCCchhHHHHHHHhhhCC
Q 004369 538 LGCIEEAFDFIKKM----DFEP-NEVIWSVFIAGCRRHGN------MELG-FYAAEQLLKLKPKDCESYAMLLDIFVSAG 605 (758)
Q Consensus 538 ~g~~~~A~~~~~~m----~~~p-~~~~~~~ll~~~~~~g~------~~~a-~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 605 (758)
. ...++++.++++ .+.+ |+.-..+|+.+++..+. -..+ .-+.+.++++++-||.+-..|+..+.+-.
T Consensus 750 ~-~~~~~~~~v~~l~~h~~f~~~npn~~ral~~~f~~~n~~~fh~~~g~gy~~~~~~i~~ld~~Np~~aarl~~~~~~w~ 828 (863)
T TIGR02414 750 S-PRPDTLERVKALLQHPAFDLKNPNRVRALIGAFANNNLVRFHDISGSGYRFLADQIIAIDRFNPQVAARLLEPLTRWR 828 (863)
T ss_pred C-CcccHHHHHHHHhcCCCCCcCCCcHHHHHHHHHHhcCcccccCCCCcHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhh
Confidence 2 223344444443 3333 44456889998864332 1233 34567788999999999999999999999
Q ss_pred CchhHHHH
Q 004369 606 RWEDVAVV 613 (758)
Q Consensus 606 ~~~~a~~~ 613 (758)
++++..+.
T Consensus 829 ~~~~~r~~ 836 (863)
T TIGR02414 829 KLDPKRQE 836 (863)
T ss_pred cCCHHHHH
Confidence 99987763
No 464
>PF08225 Antimicrobial19: Pseudin antimicrobial peptide; InterPro: IPR013156 Pseudins are a subfamily of the FSAP family (Frog Secreted Active Peptides) extracted from the skin of the paradoxical frog Pseudis paradoxa (Paradoxical frog). The pseudins belong to the class of cationic, amphipathic-helical antimicrobial peptides [].; GO: 0006952 defense response
Probab=25.13 E-value=53 Score=17.74 Aligned_cols=12 Identities=33% Similarity=0.625 Sum_probs=9.1
Q ss_pred CchhHHHHHHhh
Q 004369 716 RDCHNFIKIITS 727 (758)
Q Consensus 716 ~~~~~~~~~~s~ 727 (758)
...|+++|+||.
T Consensus 10 qglhe~ikli~n 21 (23)
T PF08225_consen 10 QGLHEVIKLINN 21 (23)
T ss_pred HHHHHHHHHHhc
Confidence 357888888874
No 465
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=25.08 E-value=6.1e+02 Score=24.20 Aligned_cols=20 Identities=20% Similarity=0.142 Sum_probs=9.5
Q ss_pred HHHcCChhHHHHHHHHHhcc
Q 004369 567 CRRHGNMELGFYAAEQLLKL 586 (758)
Q Consensus 567 ~~~~g~~~~a~~~~~~~~~~ 586 (758)
.++.|+.++|.+.+.+++..
T Consensus 175 ~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 175 NRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHhCCHHHHHHHHHHHHcC
Confidence 34444555555555444443
No 466
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=24.68 E-value=6.9e+02 Score=24.69 Aligned_cols=83 Identities=14% Similarity=0.185 Sum_probs=45.5
Q ss_pred ChHHHHhHHhhhHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 004369 421 SDVVVGTALVNMYKKCGRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACS 500 (758)
Q Consensus 421 ~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 500 (758)
.|+.....+...|.+.|++.+|+.-|-.-..++...+..++.-....|...++ |...-.+++ -|.
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~RaVL-~yL 152 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA--------------DLFIARAVL-QYL 152 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H--------------HHHHHHHHH-HHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch--------------hHHHHHHHH-HHH
Confidence 46788888999999999999999877654433333332233222222322222 222222333 355
Q ss_pred ccccHHHHHHHHHHhhhh
Q 004369 501 NAGMVYEALGYFEMMQKE 518 (758)
Q Consensus 501 ~~g~~~~a~~~~~~~~~~ 518 (758)
-.+++..|...++...+.
T Consensus 153 ~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 153 CLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HTTBHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHH
Confidence 567788888777766653
No 467
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=24.21 E-value=5.9e+02 Score=23.79 Aligned_cols=18 Identities=11% Similarity=0.324 Sum_probs=13.8
Q ss_pred hhCCCchhHHHHHHHhhh
Q 004369 602 VSAGRWEDVAVVKNLTRE 619 (758)
Q Consensus 602 ~~~g~~~~a~~~~~~m~~ 619 (758)
.+.|++++|.++++.|.+
T Consensus 132 l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 132 LRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 466788888888888865
No 468
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=24.00 E-value=9.1e+02 Score=25.84 Aligned_cols=26 Identities=15% Similarity=0.009 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHcC
Q 004369 527 HYMCLIDMFVRLGCIEEAFDFIKKMD 552 (758)
Q Consensus 527 ~~~~li~~~~~~g~~~~A~~~~~~m~ 552 (758)
+-...+.++++.|+..-+.-+++.|.
T Consensus 254 vr~~a~~AlG~lg~p~av~~L~~~l~ 279 (410)
T TIGR02270 254 TRREALRAVGLVGDVEAAPWCLEAMR 279 (410)
T ss_pred hHHHHHHHHHHcCCcchHHHHHHHhc
Confidence 33445566666666665555556554
No 469
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=23.96 E-value=4e+02 Score=22.88 Aligned_cols=41 Identities=15% Similarity=0.169 Sum_probs=19.1
Q ss_pred HHHHHHHHHHcCCCCC-HHHHHHHHHHHhccccHHHHHHHHH
Q 004369 473 ALQLFEDMLLAGVRPN-QVTFVGALAACSNAGMVYEALGYFE 513 (758)
Q Consensus 473 A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~ 513 (758)
..++|..|...|+--. +.-|.....-+...|++.+|.++|+
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4455555555554433 2223333333444555555555543
No 470
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=23.84 E-value=8e+02 Score=25.14 Aligned_cols=114 Identities=15% Similarity=0.133 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHH---cCCHHHHH
Q 004369 470 SHQALQLFEDMLLAGVRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVR---LGCIEEAF 545 (758)
Q Consensus 470 ~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~---~g~~~~A~ 545 (758)
.+.-+.++++.++. .|+ .......|..+.+....++..+-++.+...+ +-+...|...++.... .-.+++..
T Consensus 47 ~E~klsilerAL~~--np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~--~~~~~LW~~yL~~~q~~~~~f~v~~~~ 122 (321)
T PF08424_consen 47 AERKLSILERALKH--NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN--PGSPELWREYLDFRQSNFASFTVSDVR 122 (321)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHhccCcHHHHH
Confidence 45667788888776 444 5566777788888888888888888887642 2245667666665543 22455555
Q ss_pred HHHHHc---------CC------CC--CHHH---HHHHHHHHHHcCChhHHHHHHHHHhccC
Q 004369 546 DFIKKM---------DF------EP--NEVI---WSVFIAGCRRHGNMELGFYAAEQLLKLK 587 (758)
Q Consensus 546 ~~~~~m---------~~------~p--~~~~---~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 587 (758)
.+|.+. +. .| +... +.-+..-+...|..+.|..+++-+++++
T Consensus 123 ~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 123 DVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 555443 11 11 1112 2233334567899999999999999976
No 471
>PRK12356 glutaminase; Reviewed
Probab=23.72 E-value=8e+02 Score=25.09 Aligned_cols=71 Identities=11% Similarity=0.029 Sum_probs=33.7
Q ss_pred HHHcCCCC-C-HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004369 480 MLLAGVRP-N-QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKP-------VMDHYMCLIDMFVRLGCIEEAFDFIKK 550 (758)
Q Consensus 480 m~~~g~~p-~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-------~~~~~~~li~~~~~~g~~~~A~~~~~~ 550 (758)
|+..|.-+ | ..+.......|+-....++.-.+...+.. .|+.| +..+-..+......+|.+|.+-++.-+
T Consensus 178 lks~g~i~~d~~~~Ld~Yf~qCsi~vt~~dLA~~~a~LAn-~G~~P~tg~~vl~~~~~r~v~s~M~TCGmYd~SG~fa~~ 256 (319)
T PRK12356 178 LYSYGRLYCDPMEACDVYTRQCSTLVTARDLATMGATLAA-GGVNPLTGKRVVDADNVPYILAEMTMEGLYERSGDWAYT 256 (319)
T ss_pred HHHCCCCCCCHHHHHHHHHHHhccceeHHHHHHHHHHHHc-CCcCCCCCCeecCHHHHHHHHHHHHHcCCccchhhHHHH
Confidence 44544332 2 23344444445544444444444333333 35554 223444455555566666666666555
Q ss_pred c
Q 004369 551 M 551 (758)
Q Consensus 551 m 551 (758)
.
T Consensus 257 V 257 (319)
T PRK12356 257 V 257 (319)
T ss_pred h
Confidence 5
No 472
>PRK14015 pepN aminopeptidase N; Provisional
Probab=23.45 E-value=1.3e+03 Score=27.59 Aligned_cols=58 Identities=17% Similarity=0.189 Sum_probs=43.6
Q ss_pred CHHHHHHHHHHHHHcCCh------hHHH-HHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHH
Q 004369 556 NEVIWSVFIAGCRRHGNM------ELGF-YAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVV 613 (758)
Q Consensus 556 ~~~~~~~ll~~~~~~g~~------~~a~-~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 613 (758)
|+.-..+|+.+++..+.. ..+- -+.+.++++++-||.+-..|+..+.+-.++++..+.
T Consensus 782 npn~~ral~~~f~~~n~~~fh~~~g~gy~~~~~~i~~ld~~Np~~aarl~~~~~~~~~~~~~r~~ 846 (875)
T PRK14015 782 NPNRVRSLIGAFAAANPAGFHAADGSGYRFLADQILALDKINPQVAARLATPLIRWRRYDPKRQA 846 (875)
T ss_pred CCcHHHHHHHHHhhcCCcccCCCCCcHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhhccCHHHHH
Confidence 444568999998644321 3333 456778899999999999999999999999987763
No 473
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=23.27 E-value=2.8e+02 Score=25.28 Aligned_cols=48 Identities=13% Similarity=-0.080 Sum_probs=24.3
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcc
Q 004369 140 VVSWTSLISGYVQNSQPELAIHVFLDMLEAGNYPTNVTLGTALTACSS 187 (758)
Q Consensus 140 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 187 (758)
+..-..++..+...++.-.|.++++.+.+.+..++..|....|..+..
T Consensus 25 T~qR~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e 72 (169)
T PRK11639 25 TPQRLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLE 72 (169)
T ss_pred CHHHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHH
Confidence 333344445444445555566666666665555555554444444333
No 474
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=23.17 E-value=5.2e+02 Score=29.13 Aligned_cols=92 Identities=10% Similarity=0.124 Sum_probs=34.2
Q ss_pred chHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 004369 242 MSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLY 321 (758)
Q Consensus 242 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 321 (758)
..|..-+.-+...++. .....+++...-.-.+.....-++..|.+.|-.+.+..+...+-..-.. ..-|..-+..+
T Consensus 373 ~lW~vai~yL~~c~~~--g~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~~--~~~~g~AL~~~ 448 (566)
T PF07575_consen 373 SLWQVAIGYLSSCPDE--GRERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLLK--EGRYGEALSWF 448 (566)
T ss_dssp TTHHHHHHHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred chHHHHHHHHHHCChh--hHHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--CCCHHHHHHHH
Confidence 3455444444332221 1444444444333334445556666666666666666666654333211 12344445556
Q ss_pred HhcCCHHHHHHHHccC
Q 004369 322 LKCGLVDEAQKLFDGM 337 (758)
Q Consensus 322 ~~~g~~~~A~~~~~~m 337 (758)
.++|+......+-+.+
T Consensus 449 ~ra~d~~~v~~i~~~l 464 (566)
T PF07575_consen 449 IRAGDYSLVTRIADRL 464 (566)
T ss_dssp H---------------
T ss_pred HHCCCHHHHHHHHHHH
Confidence 6666665555444443
No 475
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=23.16 E-value=9.4e+02 Score=25.72 Aligned_cols=110 Identities=10% Similarity=0.021 Sum_probs=48.4
Q ss_pred CChhHHHHHHHHHhhcCChHHHHHHHhccCCCCcchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHc
Q 004369 208 DDTSVGNSLCSLYSTCGSLNSAIKAFNRIREKNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCG 287 (758)
Q Consensus 208 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 287 (758)
++..+.......+.+.+.......+......++...-.+.+.++...+. ++...+....+ .+|...-...+.+++
T Consensus 98 ~~~~vr~aaa~ALg~i~~~~a~~~L~~~L~~~~p~vR~aal~al~~r~~--~~~~~L~~~L~---d~d~~Vra~A~raLG 172 (410)
T TIGR02270 98 GPEGLCAGIQAALGWLGGRQAEPWLEPLLAASEPPGRAIGLAALGAHRH--DPGPALEAALT---HEDALVRAAALRALG 172 (410)
T ss_pred CCHHHHHHHHHHHhcCCchHHHHHHHHHhcCCChHHHHHHHHHHHhhcc--ChHHHHHHHhc---CCCHHHHHHHHHHHH
Confidence 4444555566666665555555554444444444444344444443321 12233333332 244444444555554
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 004369 288 TMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGL 326 (758)
Q Consensus 288 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 326 (758)
..+..+....+. .+. -..|..+-..-+.+....|.
T Consensus 173 ~l~~~~a~~~L~-~al---~d~~~~VR~aA~~al~~lG~ 207 (410)
T TIGR02270 173 ELPRRLSESTLR-LYL---RDSDPEVRFAALEAGLLAGS 207 (410)
T ss_pred hhccccchHHHH-HHH---cCCCHHHHHHHHHHHHHcCC
Confidence 444432222211 111 13444455555555555555
No 476
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=23.05 E-value=40 Score=35.39 Aligned_cols=145 Identities=19% Similarity=0.269 Sum_probs=84.5
Q ss_pred cCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHH-HH-HHHhhcCChHHHHHHHhccCC--CCc---
Q 004369 169 AGNYPTNVTLGTALTACSSLESIRLGKQIHAYVVKYQTEDDTSVGNS-LC-SLYSTCGSLNSAIKAFNRIRE--KNV--- 241 (758)
Q Consensus 169 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~-Li-~~y~~~g~~~~A~~~f~~~~~--~~~--- 241 (758)
.|+.||.++|.+=..+--+......|+..++.++ ||...-.. .. ..-...|.-..-+++|+.+.- |++
T Consensus 409 a~v~~d~~~yGsG~g~sKK~Ak~~AAR~tLeiLI-----Pd~~~~~~n~~d~k~~~~~k~q~~le~F~~I~Iedprv~e~ 483 (650)
T KOG4334|consen 409 AGVLPDLFPYGSGVGASKKTAKLVAARDTLEILI-----PDLRVSEDNVCDGKVEEDGKQQGFLELFKKIKIEDPRVVEM 483 (650)
T ss_pred ccccccccccccccccchHHHHHHHHHHHHHHhc-----chhhhcccccccccccccccchhHHHHhhcccccCchHHHH
Confidence 3577888877765555555555666776666554 33322111 00 001112344556788888764 322
Q ss_pred -------chHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcc------cCChHHHHHHHHHHHHhCCC
Q 004369 242 -------MSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGT------MLSLRVGAQVHSLGIKLGYA 308 (758)
Q Consensus 242 -------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~------~~~~~~a~~~~~~~~~~g~~ 308 (758)
..|+.|..++.++-.+.+ +.+=.+|...|-.-+.++. +|.+ ..+...|.++-.+.+-.-+.
T Consensus 484 ctk~~~psPy~iL~~cl~Rn~g~~d-~~ik~E~i~~~nqkse~im-----~~Gkht~~~~cknkr~gkQlASQ~ilq~lH 557 (650)
T KOG4334|consen 484 CTKCAIPSPYNILRDCLSRNLGWND-LVIKKEMIGNGNQKSEVIM-----ILGKHTEEAECKNKRQGKQLASQRILQKLH 557 (650)
T ss_pred hhhcCCCCHHHHHHHHHHhhcCCcc-eeeeeeccCCCCccceeEe-----eeccceeeeeeechhHHHHHHHHHHHHHhC
Confidence 247777777777655532 2223344444433333332 3322 24567788888877777789
Q ss_pred CchhHHHHHHHHHHhc
Q 004369 309 SNLRVRNSIMYLYLKC 324 (758)
Q Consensus 309 ~~~~~~~~li~~~~~~ 324 (758)
|...+|.+|+.+|.+.
T Consensus 558 Ph~~twGSlLriYGr~ 573 (650)
T KOG4334|consen 558 PHLLTWGSLLRIYGRL 573 (650)
T ss_pred HHhhhHHHHHHHhhhh
Confidence 9999999999999876
No 477
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=22.94 E-value=27 Score=25.75 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=17.9
Q ss_pred CeEEEecCCccccccCccccccc
Q 004369 731 REIIVRDSKRLHKFVNGHCTCRD 753 (758)
Q Consensus 731 ~~~~~~~~~~~h~~~~g~cs~~~ 753 (758)
..|-+.|.+..|+|+||+-+-.|
T Consensus 8 ksi~LkDGstvyiFKDGKMamEd 30 (73)
T PF11525_consen 8 KSIPLKDGSTVYIFKDGKMAMED 30 (73)
T ss_dssp EEEEBTTSEEEEEETTS-EEEEE
T ss_pred eeEecCCCCEEEEEcCCceehhh
Confidence 35778899999999999976554
No 478
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=22.93 E-value=3.1e+02 Score=25.00 Aligned_cols=44 Identities=9% Similarity=-0.020 Sum_probs=22.6
Q ss_pred HHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHccc
Q 004369 246 TVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTM 289 (758)
Q Consensus 246 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 289 (758)
+++..+...++.-.|.++++++.+.+..++..|.-..|..+...
T Consensus 30 ~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~ 73 (169)
T PRK11639 30 EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQ 73 (169)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHC
Confidence 34444444445556666666666665555555544444444333
No 479
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=22.61 E-value=3.6e+02 Score=23.80 Aligned_cols=34 Identities=15% Similarity=0.141 Sum_probs=17.3
Q ss_pred HHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhH
Q 004369 246 TVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTL 279 (758)
Q Consensus 246 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 279 (758)
.++..+.+.+..-.|.++++++.+.+...+..|.
T Consensus 25 ~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTV 58 (145)
T COG0735 25 AVLELLLEADGHLSAEELYEELREEGPGISLATV 58 (145)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHH
Confidence 3444455555555555566655555444444443
No 480
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=22.51 E-value=8.5e+02 Score=24.95 Aligned_cols=78 Identities=19% Similarity=0.136 Sum_probs=54.4
Q ss_pred HHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhh---CCCchhHHHHHHH
Q 004369 542 EEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVS---AGRWEDVAVVKNL 616 (758)
Q Consensus 542 ~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~a~~~~~~ 616 (758)
+.-+.+++++ ...| +...+..++..+.+.-+.+...+-+++++...|+++..+...++.... .-.+++...++..
T Consensus 48 E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~ 127 (321)
T PF08424_consen 48 ERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEK 127 (321)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence 3445555554 3355 566677888888888888888888999999999888888877776544 2346677766666
Q ss_pred hhh
Q 004369 617 TRE 619 (758)
Q Consensus 617 m~~ 619 (758)
...
T Consensus 128 ~l~ 130 (321)
T PF08424_consen 128 CLR 130 (321)
T ss_pred HHH
Confidence 544
No 481
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=22.43 E-value=3e+02 Score=26.91 Aligned_cols=16 Identities=25% Similarity=0.301 Sum_probs=6.4
Q ss_pred HHhcCCHHHHHHHHHH
Q 004369 464 FANHSLSHQALQLFED 479 (758)
Q Consensus 464 ~~~~g~~~~A~~~~~~ 479 (758)
|...|++++|+++|+.
T Consensus 188 y~~~g~~~~A~~~l~~ 203 (247)
T PF11817_consen 188 YFRLGDYDKALKLLEP 203 (247)
T ss_pred HHHCCCHHHHHHHHHH
Confidence 3333444444444433
No 482
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=22.13 E-value=3.4e+02 Score=23.99 Aligned_cols=35 Identities=11% Similarity=0.065 Sum_probs=17.8
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhh
Q 004369 143 WTSLISGYVQNSQPELAIHVFLDMLEAGNYPTNVT 177 (758)
Q Consensus 143 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 177 (758)
-..++..+.+.++.-.|.++++++.+.+...+..|
T Consensus 23 R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaT 57 (145)
T COG0735 23 RLAVLELLLEADGHLSAEELYEELREEGPGISLAT 57 (145)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhH
Confidence 34455555555555555555555555544433333
No 483
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=21.91 E-value=74 Score=33.59 Aligned_cols=95 Identities=16% Similarity=0.156 Sum_probs=58.3
Q ss_pred CChHHHHHHHccCCC--CC----------cchHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcc---
Q 004369 123 GNMEEAQKVFDNLPR--IN----------VVSWTSLISGYVQNSQPELAIHVFLDMLEAGNYPTNVTLGTALTACSS--- 187 (758)
Q Consensus 123 g~~~~A~~~f~~~~~--~~----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~--- 187 (758)
|.-..-+++|+.+.- ++ ...|+.|..++.++-.+.+ +.+=.+|...|-.-+.++ .+|.+
T Consensus 461 ~k~q~~le~F~~I~Iedprv~e~ctk~~~psPy~iL~~cl~Rn~g~~d-~~ik~E~i~~~nqkse~i-----m~~Gkht~ 534 (650)
T KOG4334|consen 461 GKQQGFLELFKKIKIEDPRVVEMCTKCAIPSPYNILRDCLSRNLGWND-LVIKKEMIGNGNQKSEVI-----MILGKHTE 534 (650)
T ss_pred ccchhHHHHhhcccccCchHHHHhhhcCCCCHHHHHHHHHHhhcCCcc-eeeeeeccCCCCccceeE-----eeecccee
Confidence 344556788888762 22 2358888888887765542 122234443333333332 23332
Q ss_pred ---cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHhhc
Q 004369 188 ---LESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTC 223 (758)
Q Consensus 188 ---~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~ 223 (758)
......|+|+-.+.+-.-+.|...+|.+|+++|.+.
T Consensus 535 ~~~cknkr~gkQlASQ~ilq~lHPh~~twGSlLriYGr~ 573 (650)
T KOG4334|consen 535 EAECKNKRQGKQLASQRILQKLHPHLLTWGSLLRIYGRL 573 (650)
T ss_pred eeeeechhHHHHHHHHHHHHHhCHHhhhHHHHHHHhhhh
Confidence 235667888877777667788999999999999876
No 484
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=21.89 E-value=4e+02 Score=20.96 Aligned_cols=61 Identities=11% Similarity=0.274 Sum_probs=39.5
Q ss_pred HHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHH
Q 004369 409 QIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQA 473 (758)
Q Consensus 409 ~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 473 (758)
.++..+.+.|+-.... .-...+...+.+.|.++++.++.++..+|.++..++...|...-|
T Consensus 20 ~v~~~L~~~~Vlt~~~----~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 20 YLWDHLLSRGVFTPDM----IEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHhcCCCCHHH----HHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 3555555555432211 112223446688888888888888888888888888887765544
No 485
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=21.83 E-value=3.8e+02 Score=22.99 Aligned_cols=41 Identities=17% Similarity=0.072 Sum_probs=30.0
Q ss_pred HHHHHHHHHhccC--CCCchhHHHHHHHhhhCCCchhHHHHHH
Q 004369 575 LGFYAAEQLLKLK--PKDCESYAMLLDIFVSAGRWEDVAVVKN 615 (758)
Q Consensus 575 ~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 615 (758)
....++..+...+ -.-+..|...+..+-..|++.+|.++++
T Consensus 81 dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 81 EPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3566777776543 4456678888888888889888888875
No 486
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=21.51 E-value=8.8e+02 Score=24.80 Aligned_cols=25 Identities=16% Similarity=0.409 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Q 004369 526 DHYMCLIDMFVRLGCIEEAFDFIKK 550 (758)
Q Consensus 526 ~~~~~li~~~~~~g~~~~A~~~~~~ 550 (758)
+.+-...+-|++-|+-+.|++.+++
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~ 129 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRK 129 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHH
Confidence 3444455566666666666666554
No 487
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=21.34 E-value=6.7e+02 Score=26.97 Aligned_cols=43 Identities=12% Similarity=0.124 Sum_probs=27.8
Q ss_pred CCChhHHHHHHHHhHhCCCCCCHHHH--HHHHHHHhcccchHHHHHHHH
Q 004369 366 HNGGTEALSIFSKLNSSGMKPDLYTF--SSILTICSRLVALEQGEQIHA 412 (758)
Q Consensus 366 ~g~~~~A~~l~~~m~~~g~~p~~~t~--~~ll~a~~~~~~~~~a~~i~~ 412 (758)
.|..+-+ +.+.+.|..++..++ ++.+.-|+..|.++-...+..
T Consensus 160 kGh~~I~----qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~ 204 (615)
T KOG0508|consen 160 KGHVDIA----QYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLK 204 (615)
T ss_pred cCchHHH----HHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHHh
Confidence 4555544 344456777776665 678888888888876555543
No 488
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=20.98 E-value=1.8e+02 Score=22.21 Aligned_cols=37 Identities=11% Similarity=0.144 Sum_probs=27.7
Q ss_pred CCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHhccc
Q 004369 366 HNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLV 402 (758)
Q Consensus 366 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~ 402 (758)
.++.+.+.+++++....|..|.......+..+....|
T Consensus 14 ~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG 50 (79)
T PF02607_consen 14 AGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIG 50 (79)
T ss_dssp TT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 7888999999999998888888777766666555444
No 489
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=20.71 E-value=4.9e+02 Score=21.48 Aligned_cols=84 Identities=6% Similarity=-0.042 Sum_probs=0.0
Q ss_pred HHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 004369 245 TTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKC 324 (758)
Q Consensus 245 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 324 (758)
..++..|...++.++|.+.+.++......++..........=.+...-+....++..+.+.+.........++-+.+...
T Consensus 6 ~~~l~ey~~~~D~~ea~~~l~~L~~~~~~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~~~~~~~~~~~f~~~~~~l 85 (113)
T smart00544 6 FLIIEEYLSSGDTDEAVHCLLELKLPEQHHEVVKVLLTCALEEKRTYREMYSVLLSRLCQANVISTKQFEKGFWRLLEDI 85 (113)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHhhC
Q ss_pred CCHH
Q 004369 325 GLVD 328 (758)
Q Consensus 325 g~~~ 328 (758)
.+.+
T Consensus 86 ~dl~ 89 (113)
T smart00544 86 EDLE 89 (113)
T ss_pred hhhh
No 490
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=20.71 E-value=4.2e+02 Score=29.71 Aligned_cols=91 Identities=12% Similarity=0.246 Sum_probs=0.0
Q ss_pred HHHHHHhccccHHHHHHHHHHhhhhcCCCCC-HHHHHHHHHHHHHcCCHH------HHHHHHHHcCCCCCHHHHHHHHHH
Q 004369 494 GALAACSNAGMVYEALGYFEMMQKEYKIKPV-MDHYMCLIDMFVRLGCIE------EAFDFIKKMDFEPNEVIWSVFIAG 566 (758)
Q Consensus 494 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~------~A~~~~~~m~~~p~~~~~~~ll~~ 566 (758)
+|+.||...|++..+.++++.......-+.- ...||..+.-..+.|.++ .|-+.+++..+.-|..||..|..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Q ss_pred HHHcCChhHHHHHHHHHh
Q 004369 567 CRRHGNMELGFYAAEQLL 584 (758)
Q Consensus 567 ~~~~g~~~~a~~~~~~~~ 584 (758)
...--.-..++-++..++
T Consensus 113 sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 113 SLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred hcChHhHHhccHHHHHHH
No 491
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=20.26 E-value=5.3e+02 Score=25.19 Aligned_cols=23 Identities=17% Similarity=0.473 Sum_probs=16.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHc
Q 004369 529 MCLIDMFVRLGCIEEAFDFIKKM 551 (758)
Q Consensus 529 ~~li~~~~~~g~~~~A~~~~~~m 551 (758)
.-|...|.+.|++++|.++|+.+
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHH
Confidence 34566777777777777777765
No 492
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=20.24 E-value=2.4e+02 Score=32.01 Aligned_cols=145 Identities=16% Similarity=0.219 Sum_probs=74.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH----------HHHHHHHHhccccHHHHHHHHHHhhhh-cCCCCC
Q 004369 456 SWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVT----------FVGALAACSNAGMVYEALGYFEMMQKE-YKIKPV 524 (758)
Q Consensus 456 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t----------~~~ll~a~~~~g~~~~a~~~~~~~~~~-~~~~p~ 524 (758)
+-..|+-.|....+++..+++.+.++. -||..- |.-.++-=.+-|+-++|+...-.+.+. -.+.||
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~Lk~---iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapD 279 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVEDLKR---IPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPD 279 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHh---CcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCc
Confidence 455666677778888888888888776 344221 222222223457777777766555543 234565
Q ss_pred HHHHH--HHHHH-----HHHcCCHHHHHHHHHHc-CCCCCHHH---HHHHHHHHHHcCChhHHHHHHHHHhccCCCCchh
Q 004369 525 MDHYM--CLIDM-----FVRLGCIEEAFDFIKKM-DFEPNEVI---WSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCES 593 (758)
Q Consensus 525 ~~~~~--~li~~-----~~~~g~~~~A~~~~~~m-~~~p~~~~---~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 593 (758)
..... ..=|+ |..++..+.|.+.|++. ..+|+..+ +..|+.+-.++ ++..+++- ..
T Consensus 280 m~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sGIN~atLL~aaG~~--Fens~Elq-----------~I 346 (1226)
T KOG4279|consen 280 MYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSGINLATLLRAAGEH--FENSLELQ-----------QI 346 (1226)
T ss_pred eeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhccccHHHHHHHhhhh--ccchHHHH-----------HH
Confidence 42211 11122 23334556677777766 55665433 34444333222 22211111 12
Q ss_pred HHHHHHHhhhCCCchhHHHHHHH
Q 004369 594 YAMLLDIFVSAGRWEDVAVVKNL 616 (758)
Q Consensus 594 ~~~l~~~~~~~g~~~~a~~~~~~ 616 (758)
-..|.+.+.+.|..+.-..+++.
T Consensus 347 gmkLn~LlgrKG~leklq~YWdV 369 (1226)
T KOG4279|consen 347 GMKLNSLLGRKGALEKLQEYWDV 369 (1226)
T ss_pred HHHHHHHhhccchHHHHHHHHhH
Confidence 34456667777777666665554
No 493
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=20.24 E-value=1.7e+02 Score=22.32 Aligned_cols=39 Identities=21% Similarity=0.205 Sum_probs=28.8
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccc
Q 004369 465 ANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAG 503 (758)
Q Consensus 465 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 503 (758)
...|+.+.+.+++++..+.|..|..+....+..+..+.|
T Consensus 12 l~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG 50 (79)
T PF02607_consen 12 LLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIG 50 (79)
T ss_dssp HHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 346888899999999998888888777666666655544
No 494
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=20.15 E-value=1.8e+02 Score=24.18 Aligned_cols=83 Identities=8% Similarity=-0.019 Sum_probs=0.0
Q ss_pred HHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcc-cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 004369 245 TTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGT-MLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLK 323 (758)
Q Consensus 245 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 323 (758)
..++..|...|+.++|...+.++... -.-..+....+-.++-+ ...-+....++..+.+.+.-+......++-+.+..
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~-~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~~~~~~~~gf~~~l~~ 84 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLP-SQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLISKEQFQEGFEDLLES 84 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-G-GGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCC-ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhH
Q ss_pred cCCHH
Q 004369 324 CGLVD 328 (758)
Q Consensus 324 ~g~~~ 328 (758)
..++.
T Consensus 85 l~Dl~ 89 (113)
T PF02847_consen 85 LEDLE 89 (113)
T ss_dssp HHHHH
T ss_pred hhhcc
Done!