Query 004369
Match_columns 758
No_of_seqs 889 out of 4899
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 23:03:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004369.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004369hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.5E-41 5.2E-46 385.1 38.1 480 119-620 63-579 (597)
2 2xpi_A Anaphase-promoting comp 100.0 7.9E-39 2.7E-43 362.8 34.2 497 69-603 79-596 (597)
3 4g26_A Pentatricopeptide repea 99.9 4.3E-27 1.5E-31 255.4 20.6 184 343-538 27-223 (501)
4 1w3b_A UDP-N-acetylglucosamine 99.9 1.1E-24 3.6E-29 232.4 38.4 369 184-606 8-388 (388)
5 4g26_A Pentatricopeptide repea 99.9 5.3E-27 1.8E-31 254.7 18.7 212 259-503 8-224 (501)
6 1w3b_A UDP-N-acetylglucosamine 99.9 7.6E-24 2.6E-28 225.7 39.6 350 249-619 7-367 (388)
7 2gw1_A Mitochondrial precursor 99.9 4.3E-22 1.5E-26 220.6 29.8 438 142-597 8-489 (514)
8 2y4t_A DNAJ homolog subfamily 99.9 1.1E-21 3.9E-26 213.3 29.1 335 243-616 28-405 (450)
9 2gw1_A Mitochondrial precursor 99.9 4.1E-21 1.4E-25 212.7 29.9 427 177-619 8-477 (514)
10 3fp2_A TPR repeat-containing p 99.9 3.9E-20 1.3E-24 206.1 36.3 434 141-620 26-491 (537)
11 2y4t_A DNAJ homolog subfamily 99.9 1.2E-19 4.2E-24 197.2 31.3 294 310-620 25-358 (450)
12 3fp2_A TPR repeat-containing p 99.8 1.3E-18 4.6E-23 193.6 35.0 440 76-596 27-501 (537)
13 3ieg_A DNAJ homolog subfamily 99.8 2.4E-17 8.3E-22 172.7 32.8 303 277-619 4-334 (359)
14 3ieg_A DNAJ homolog subfamily 99.8 6.1E-17 2.1E-21 169.7 30.9 331 240-603 2-352 (359)
15 3hym_B Cell division cycle pro 99.8 7.5E-17 2.6E-21 166.9 27.1 286 308-607 19-321 (330)
16 1xi4_A Clathrin heavy chain; a 99.8 1.9E-14 6.6E-19 164.9 48.6 379 177-612 987-1376(1630)
17 1b89_A Protein (clathrin heavy 99.8 2.6E-17 9E-22 169.9 22.2 320 222-588 15-343 (449)
18 1fch_A Peroxisomal targeting s 99.7 1.8E-16 6E-21 167.1 23.9 282 321-617 35-356 (368)
19 1b89_A Protein (clathrin heavy 99.7 1.1E-16 3.6E-21 165.4 21.2 284 120-446 14-305 (449)
20 2ooe_A Cleavage stimulation fa 99.7 1.9E-14 6.6E-19 159.5 40.8 209 406-620 256-492 (530)
21 3hym_B Cell division cycle pro 99.7 7.8E-16 2.7E-20 159.2 27.5 264 340-619 20-298 (330)
22 1xi4_A Clathrin heavy chain; a 99.7 6.9E-13 2.4E-17 152.2 51.8 420 75-552 986-1443(1630)
23 2xm6_A Protein corresponding t 99.7 2.4E-14 8.3E-19 157.0 37.5 381 159-603 26-452 (490)
24 4eqf_A PEX5-related protein; a 99.7 3.5E-16 1.2E-20 164.8 20.1 261 341-616 64-352 (365)
25 3mkr_A Coatomer subunit epsilo 99.7 3.2E-15 1.1E-19 151.3 24.9 239 366-619 12-263 (291)
26 3mkr_A Coatomer subunit epsilo 99.7 7.5E-15 2.6E-19 148.5 27.6 268 320-612 8-286 (291)
27 1fch_A Peroxisomal targeting s 99.7 9.1E-16 3.1E-20 161.6 21.5 252 366-620 38-314 (368)
28 2ooe_A Cleavage stimulation fa 99.7 2E-14 6.9E-19 159.4 32.2 430 97-589 2-495 (530)
29 4eqf_A PEX5-related protein; a 99.7 2.3E-15 7.8E-20 158.5 22.7 231 387-620 64-310 (365)
30 3cv0_A Peroxisome targeting si 99.7 2.3E-15 8E-20 155.4 20.7 261 342-618 21-313 (327)
31 2xm6_A Protein corresponding t 99.7 3.3E-13 1.1E-17 148.0 38.8 354 240-621 38-433 (490)
32 3spa_A Mtrpol, DNA-directed RN 99.7 1.1E-16 3.8E-21 177.7 9.5 128 419-547 123-258 (1134)
33 4g1t_A Interferon-induced prot 99.7 3E-14 1E-18 155.6 28.8 370 210-631 51-470 (472)
34 3spa_A Mtrpol, DNA-directed RN 99.6 2.2E-16 7.4E-21 175.5 10.6 148 207-354 124-284 (1134)
35 4g1t_A Interferon-induced prot 99.6 2.5E-14 8.7E-19 156.2 25.1 381 174-598 50-471 (472)
36 2pl2_A Hypothetical conserved 99.6 6.2E-14 2.1E-18 135.3 20.0 193 420-617 2-211 (217)
37 3uq3_A Heat shock protein STI1 99.6 1.2E-13 4.2E-18 136.9 22.4 218 389-619 6-235 (258)
38 3cv0_A Peroxisome targeting si 99.6 1.2E-13 4.3E-18 142.3 21.8 229 387-620 20-269 (327)
39 1xnf_A Lipoprotein NLPI; TPR, 99.5 2.9E-13 1E-17 135.7 20.2 240 366-614 18-269 (275)
40 3uq3_A Heat shock protein STI1 99.5 2.6E-13 8.8E-18 134.6 18.0 235 344-600 7-256 (258)
41 2vq2_A PILW, putative fimbrial 99.5 3.4E-12 1.2E-16 123.5 22.0 197 421-619 6-210 (225)
42 2ho1_A Type 4 fimbrial biogene 99.5 2.7E-12 9.2E-17 126.9 21.3 196 423-620 37-238 (252)
43 3u4t_A TPR repeat-containing p 99.5 1.3E-12 4.5E-17 130.8 19.2 235 366-605 16-269 (272)
44 2ho1_A Type 4 fimbrial biogene 99.5 8.7E-12 3E-16 123.2 24.4 206 388-596 37-248 (252)
45 2q7f_A YRRB protein; TPR, prot 99.5 1.4E-12 4.6E-17 128.1 17.4 192 425-619 25-221 (243)
46 2q7f_A YRRB protein; TPR, prot 99.5 1.4E-12 4.8E-17 128.0 17.5 215 385-603 20-239 (243)
47 3e4b_A ALGK; tetratricopeptide 99.5 8.2E-12 2.8E-16 134.8 24.7 366 185-617 13-418 (452)
48 3e4b_A ALGK; tetratricopeptide 99.4 1.2E-11 4.1E-16 133.5 24.5 183 80-271 9-209 (452)
49 2h6f_A Protein farnesyltransfe 99.4 4.6E-12 1.6E-16 132.5 20.4 225 389-619 98-347 (382)
50 2vq2_A PILW, putative fimbrial 99.4 1.8E-11 6.2E-16 118.3 23.3 208 387-597 7-222 (225)
51 1ouv_A Conserved hypothetical 99.4 6.4E-11 2.2E-15 118.6 27.4 223 387-621 5-252 (273)
52 3vtx_A MAMA; tetratricopeptide 99.4 8.6E-12 2.9E-16 116.7 19.4 164 453-620 4-170 (184)
53 4abn_A Tetratricopeptide repea 99.4 2.1E-12 7.4E-17 140.3 16.2 208 405-617 85-318 (474)
54 2pl2_A Hypothetical conserved 99.4 6.4E-12 2.2E-16 121.1 17.4 194 385-584 2-212 (217)
55 3u4t_A TPR repeat-containing p 99.4 3.6E-11 1.2E-15 120.2 22.5 241 313-567 5-265 (272)
56 1ouv_A Conserved hypothetical 99.4 1.1E-10 3.9E-15 116.8 26.0 225 342-591 6-256 (273)
57 2h6f_A Protein farnesyltransfe 99.4 1.4E-11 4.6E-16 128.9 19.5 241 344-603 99-365 (382)
58 4a1s_A PINS, partner of inscut 99.4 5.3E-12 1.8E-16 134.9 15.3 253 366-619 61-371 (411)
59 1xnf_A Lipoprotein NLPI; TPR, 99.4 3.3E-11 1.1E-15 120.6 19.7 217 399-620 16-244 (275)
60 3sf4_A G-protein-signaling mod 99.3 1.5E-11 5.1E-16 130.9 17.8 253 366-619 22-335 (406)
61 3vtx_A MAMA; tetratricopeptide 99.3 2.4E-11 8.3E-16 113.5 17.1 167 422-591 4-175 (184)
62 3ro2_A PINS homolog, G-protein 99.3 3.2E-11 1.1E-15 124.4 19.5 254 366-620 18-332 (338)
63 4e6h_A MRNA 3'-END-processing 99.3 2.7E-09 9.2E-14 119.1 36.0 432 138-602 64-585 (679)
64 4gyw_A UDP-N-acetylglucosamine 99.3 3E-11 1E-15 136.5 18.9 162 453-619 8-173 (723)
65 3sf4_A G-protein-signaling mod 99.3 9E-12 3.1E-16 132.6 14.0 244 366-609 60-365 (406)
66 3nf1_A KLC 1, kinesin light ch 99.3 1.3E-11 4.5E-16 126.0 12.1 233 387-619 26-306 (311)
67 4i17_A Hypothetical protein; T 99.2 1.7E-10 5.9E-15 112.0 17.7 162 455-619 8-208 (228)
68 2ond_A Cleavage stimulation fa 99.2 1.3E-09 4.5E-14 111.1 25.0 218 370-591 33-275 (308)
69 4a1s_A PINS, partner of inscut 99.2 4.1E-11 1.4E-15 128.0 14.0 262 317-589 54-375 (411)
70 2ond_A Cleavage stimulation fa 99.2 4.9E-10 1.7E-14 114.3 20.3 213 405-622 33-272 (308)
71 3as5_A MAMA; tetratricopeptide 99.2 3.4E-10 1.2E-14 105.3 17.4 157 460-619 14-172 (186)
72 4i17_A Hypothetical protein; T 99.2 8.3E-10 2.8E-14 107.1 20.3 204 387-602 6-225 (228)
73 4e6h_A MRNA 3'-END-processing 99.2 2.5E-08 8.7E-13 111.3 34.5 411 56-483 49-570 (679)
74 4abn_A Tetratricopeptide repea 99.2 2.2E-10 7.5E-15 124.4 17.4 178 438-620 83-287 (474)
75 3nf1_A KLC 1, kinesin light ch 99.2 4.4E-11 1.5E-15 122.0 10.7 236 343-589 28-310 (311)
76 3ulq_A Response regulator aspa 99.2 1.9E-10 6.5E-15 121.6 15.9 225 394-619 109-367 (383)
77 3as5_A MAMA; tetratricopeptide 99.2 9.5E-10 3.3E-14 102.2 18.7 168 423-593 8-180 (186)
78 3ro2_A PINS homolog, G-protein 99.2 3.8E-10 1.3E-14 116.2 17.3 134 456-589 185-335 (338)
79 3ulq_A Response regulator aspa 99.1 7.9E-10 2.7E-14 116.7 17.6 222 366-587 116-369 (383)
80 1hz4_A MALT regulatory protein 99.1 1.9E-08 6.5E-13 105.6 27.1 254 366-619 27-321 (373)
81 4gyw_A UDP-N-acetylglucosamine 99.1 8.7E-10 3E-14 124.6 16.0 164 420-588 6-176 (723)
82 3q15_A PSP28, response regulat 99.1 3E-09 1E-13 112.0 19.4 223 396-619 109-364 (378)
83 3edt_B KLC 2, kinesin light ch 99.1 2E-09 6.8E-14 107.7 15.4 197 423-619 43-280 (283)
84 3qky_A Outer membrane assembly 99.0 8E-09 2.7E-13 102.4 18.4 205 422-666 14-247 (261)
85 1qqe_A Vesicular transport pro 99.0 7.8E-09 2.7E-13 104.4 16.7 155 397-551 46-225 (292)
86 1qqe_A Vesicular transport pro 99.0 5.7E-09 1.9E-13 105.4 15.2 201 403-618 32-267 (292)
87 4ga2_A E3 SUMO-protein ligase 99.0 1.1E-09 3.7E-14 98.3 8.1 138 465-606 8-149 (150)
88 3mv2_B Coatomer subunit epsilo 99.0 2.1E-07 7.2E-12 92.1 24.8 233 366-620 26-282 (310)
89 3q15_A PSP28, response regulat 98.9 9.6E-08 3.3E-12 100.4 23.3 221 366-586 114-365 (378)
90 3qky_A Outer membrane assembly 98.9 2.4E-08 8.3E-13 98.9 17.5 203 386-609 13-250 (261)
91 4ga2_A E3 SUMO-protein ligase 98.9 3.6E-09 1.2E-13 94.8 10.0 121 496-619 4-128 (150)
92 2yhc_A BAMD, UPF0169 lipoprote 98.9 8.8E-08 3E-12 92.4 20.3 180 424-622 5-215 (225)
93 3edt_B KLC 2, kinesin light ch 98.9 2.7E-08 9.4E-13 99.3 17.3 222 366-587 14-282 (283)
94 2pzi_A Probable serine/threoni 98.9 1.3E-08 4.5E-13 115.5 16.3 167 434-606 402-583 (681)
95 2fo7_A Synthetic consensus TPR 98.9 2.8E-08 9.7E-13 86.4 14.6 123 495-619 7-131 (136)
96 1hz4_A MALT regulatory protein 98.9 4.7E-07 1.6E-11 94.9 25.7 224 396-619 22-281 (373)
97 2fo7_A Synthetic consensus TPR 98.9 6.3E-08 2.1E-12 84.2 15.7 131 456-589 3-135 (136)
98 3qou_A Protein YBBN; thioredox 98.9 4.9E-08 1.7E-12 98.1 16.5 176 438-618 101-282 (287)
99 3gyz_A Chaperone protein IPGC; 98.8 1.8E-08 6.3E-13 89.8 10.8 101 520-620 30-133 (151)
100 4gco_A Protein STI-1; structur 98.8 3.2E-08 1.1E-12 85.5 11.9 94 526-619 14-109 (126)
101 2vgx_A Chaperone SYCD; alterna 98.8 1.9E-08 6.4E-13 89.8 9.5 101 520-620 15-118 (148)
102 3mv2_B Coatomer subunit epsilo 98.8 6.1E-07 2.1E-11 88.8 20.8 181 407-595 85-291 (310)
103 4gco_A Protein STI-1; structur 98.8 6E-08 2.1E-12 83.7 11.9 115 485-601 8-125 (126)
104 2r5s_A Uncharacterized protein 98.7 7E-08 2.4E-12 89.1 12.6 153 461-618 13-171 (176)
105 3rjv_A Putative SEL1 repeat pr 98.7 5.3E-07 1.8E-11 85.9 19.0 171 442-621 5-198 (212)
106 2vsy_A XCC0866; transferase, g 98.7 8.4E-08 2.9E-12 106.9 15.4 159 436-598 2-169 (568)
107 2pzi_A Probable serine/threoni 98.7 1.7E-07 5.7E-12 106.5 16.9 190 399-594 402-610 (681)
108 3urz_A Uncharacterized protein 98.7 1.7E-07 6E-12 89.0 14.3 127 460-590 60-190 (208)
109 2vsy_A XCC0866; transferase, g 98.7 1.6E-07 5.6E-12 104.6 16.2 146 401-551 2-154 (568)
110 2ifu_A Gamma-SNAP; membrane fu 98.7 4.9E-07 1.7E-11 91.8 18.1 219 366-612 4-253 (307)
111 2xcb_A PCRH, regulatory protei 98.7 1.6E-07 5.6E-12 83.0 12.1 99 521-619 13-114 (142)
112 3dra_A Protein farnesyltransfe 98.7 2.6E-06 9E-11 85.2 21.9 211 405-619 50-286 (306)
113 2uy1_A Cleavage stimulation fa 98.7 1.4E-05 4.8E-10 86.5 29.0 373 152-584 6-411 (493)
114 2qfc_A PLCR protein; TPR, HTH, 98.6 1.1E-06 3.9E-11 88.4 19.0 164 456-619 77-265 (293)
115 1hh8_A P67PHOX, NCF-2, neutrop 98.6 4.3E-07 1.5E-11 86.5 15.0 120 495-619 12-149 (213)
116 2yhc_A BAMD, UPF0169 lipoprote 98.6 5.7E-07 1.9E-11 86.7 15.8 184 388-592 4-219 (225)
117 3u3w_A Transcriptional activat 98.6 3.7E-06 1.3E-10 84.6 22.2 160 460-619 81-265 (293)
118 2r5s_A Uncharacterized protein 98.6 4.7E-07 1.6E-11 83.4 14.2 155 426-585 9-172 (176)
119 3upv_A Heat shock protein STI1 98.6 2.7E-07 9.3E-12 79.5 11.2 95 525-619 4-100 (126)
120 1hh8_A P67PHOX, NCF-2, neutrop 98.6 2.6E-06 8.8E-11 81.0 18.2 142 427-590 10-154 (213)
121 3urz_A Uncharacterized protein 98.6 2.4E-06 8.2E-11 81.0 17.4 135 426-565 57-198 (208)
122 2e2e_A Formate-dependent nitri 98.6 4.2E-07 1.4E-11 83.8 11.8 120 499-620 20-144 (177)
123 3qou_A Protein YBBN; thioredox 98.5 9.3E-07 3.2E-11 88.7 15.0 160 422-585 116-283 (287)
124 2vyi_A SGTA protein; chaperone 98.5 6.9E-07 2.4E-11 77.0 12.4 118 489-608 12-131 (131)
125 1a17_A Serine/threonine protei 98.5 7.1E-07 2.4E-11 80.9 12.9 127 491-619 15-145 (166)
126 1na0_A Designed protein CTPR3; 98.5 1.2E-06 4.1E-11 74.7 13.5 115 489-605 9-125 (125)
127 3rjv_A Putative SEL1 repeat pr 98.5 5.3E-06 1.8E-10 78.9 18.3 173 407-589 5-200 (212)
128 2lni_A Stress-induced-phosphop 98.5 7E-07 2.4E-11 77.4 11.1 116 489-606 16-133 (133)
129 2c2l_A CHIP, carboxy terminus 98.5 2.4E-07 8.1E-12 92.7 9.1 191 422-620 3-199 (281)
130 2uy1_A Cleavage stimulation fa 98.5 4.8E-05 1.6E-09 82.3 27.9 346 88-482 28-412 (493)
131 3u3w_A Transcriptional activat 98.5 1.4E-05 4.8E-10 80.3 22.0 202 376-586 34-266 (293)
132 1p5q_A FKBP52, FK506-binding p 98.5 9.9E-07 3.4E-11 90.7 13.2 143 453-617 146-291 (336)
133 3gyz_A Chaperone protein IPGC; 98.5 5E-07 1.7E-11 80.4 9.4 105 485-591 31-138 (151)
134 2ifu_A Gamma-SNAP; membrane fu 98.5 6.3E-07 2.2E-11 91.0 11.3 197 400-618 3-222 (307)
135 3dra_A Protein farnesyltransfe 98.5 3.5E-05 1.2E-09 77.0 23.5 229 366-600 46-302 (306)
136 2qfc_A PLCR protein; TPR, HTH, 98.4 9.6E-06 3.3E-10 81.5 19.1 163 424-586 76-266 (293)
137 2vgx_A Chaperone SYCD; alterna 98.4 4.7E-07 1.6E-11 80.6 8.0 110 485-596 16-128 (148)
138 3sz7_A HSC70 cochaperone (SGT) 98.4 3.5E-06 1.2E-10 76.4 13.5 95 525-619 11-107 (164)
139 1hxi_A PEX5, peroxisome target 98.4 7.8E-07 2.7E-11 76.0 8.5 94 527-620 19-114 (121)
140 1elw_A TPR1-domain of HOP; HOP 98.4 3.3E-06 1.1E-10 71.1 12.4 93 527-619 6-100 (118)
141 1wao_1 Serine/threonine protei 98.4 7.8E-07 2.7E-11 96.2 10.0 117 498-616 15-135 (477)
142 3q49_B STIP1 homology and U bo 98.4 2.6E-06 8.9E-11 74.3 11.3 98 523-620 7-106 (137)
143 2lni_A Stress-induced-phosphop 98.4 3.9E-06 1.3E-10 72.5 12.3 97 523-619 14-112 (133)
144 1elw_A TPR1-domain of HOP; HOP 98.4 5.4E-06 1.9E-10 69.7 12.9 110 490-601 5-116 (118)
145 2kck_A TPR repeat; tetratricop 98.3 1.8E-06 6.1E-11 72.0 9.6 97 525-621 6-107 (112)
146 4gcn_A Protein STI-1; structur 98.3 1.4E-06 4.9E-11 75.1 9.0 94 526-619 9-111 (127)
147 3gw4_A Uncharacterized protein 98.3 4.5E-06 1.5E-10 78.5 13.2 152 435-586 4-176 (203)
148 4f3v_A ESX-1 secretion system 98.3 1.5E-05 5E-10 77.9 16.7 180 435-619 18-236 (282)
149 2e2e_A Formate-dependent nitri 98.3 2.5E-06 8.6E-11 78.4 10.9 127 465-594 21-152 (177)
150 3rkv_A Putative peptidylprolyl 98.3 2.6E-06 9E-11 77.0 10.7 93 527-619 13-125 (162)
151 4f3v_A ESX-1 secretion system 98.3 4.9E-06 1.7E-10 81.2 13.0 139 457-600 105-250 (282)
152 1na0_A Designed protein CTPR3; 98.3 8.5E-06 2.9E-10 69.2 13.4 95 525-619 9-105 (125)
153 3upv_A Heat shock protein STI1 98.3 4.1E-06 1.4E-10 72.0 11.2 109 491-601 6-122 (126)
154 2vyi_A SGTA protein; chaperone 98.3 4.8E-06 1.7E-10 71.5 11.5 96 524-619 11-108 (131)
155 2fbn_A 70 kDa peptidylprolyl i 98.3 3.6E-06 1.2E-10 79.1 11.4 168 430-618 11-184 (198)
156 2xcb_A PCRH, regulatory protei 98.3 2.6E-06 8.8E-11 75.1 9.7 108 491-600 20-129 (142)
157 1wao_1 Serine/threonine protei 98.3 6.4E-06 2.2E-10 89.0 14.7 88 428-517 11-102 (477)
158 2dba_A Smooth muscle cell asso 98.3 9.5E-06 3.2E-10 71.6 13.5 109 489-600 28-142 (148)
159 3sz7_A HSC70 cochaperone (SGT) 98.3 5.6E-06 1.9E-10 75.0 11.8 109 489-599 11-121 (164)
160 3gw4_A Uncharacterized protein 98.3 1.3E-05 4.4E-10 75.3 14.7 154 465-619 3-175 (203)
161 2dba_A Smooth muscle cell asso 98.3 1.3E-05 4.3E-10 70.8 13.7 95 453-551 27-125 (148)
162 3q7a_A Farnesyltransferase alp 98.2 6.7E-05 2.3E-09 75.8 19.5 232 366-619 50-330 (349)
163 2fbn_A 70 kDa peptidylprolyl i 98.2 2.1E-06 7.1E-11 80.7 7.4 117 501-619 16-150 (198)
164 1a17_A Serine/threonine protei 98.2 2.5E-05 8.6E-10 70.4 14.3 127 456-585 15-145 (166)
165 2hr2_A Hypothetical protein; a 98.2 5.6E-06 1.9E-10 72.9 9.3 92 528-619 14-130 (159)
166 2xev_A YBGF; tetratricopeptide 98.2 7.2E-06 2.5E-10 70.5 9.9 89 531-619 8-104 (129)
167 1elr_A TPR2A-domain of HOP; HO 98.2 1.3E-05 4.4E-10 68.8 11.0 95 525-619 4-107 (131)
168 3q49_B STIP1 homology and U bo 98.2 8.9E-06 3E-10 70.8 10.0 100 488-589 8-109 (137)
169 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 1.4E-05 5E-10 85.8 13.1 161 437-619 248-414 (457)
170 1p5q_A FKBP52, FK506-binding p 98.1 1.6E-05 5.3E-10 81.7 12.7 126 422-584 146-292 (336)
171 3dss_A Geranylgeranyl transfer 98.1 0.00025 8.4E-09 71.3 20.9 178 439-619 90-303 (331)
172 3k9i_A BH0479 protein; putativ 98.1 2.7E-06 9.2E-11 72.1 4.8 81 539-619 4-89 (117)
173 1hxi_A PEX5, peroxisome target 98.1 1.4E-05 4.8E-10 68.0 9.2 97 493-591 21-119 (121)
174 2kck_A TPR repeat; tetratricop 98.1 1.9E-05 6.5E-10 65.6 10.0 99 491-591 8-111 (112)
175 1elr_A TPR2A-domain of HOP; HO 98.1 1.4E-05 4.7E-10 68.6 9.1 108 492-602 7-123 (131)
176 3dss_A Geranylgeranyl transfer 98.0 0.00089 3E-08 67.2 23.3 229 366-601 43-319 (331)
177 2c2l_A CHIP, carboxy terminus 98.0 2.2E-05 7.6E-10 78.2 11.6 106 488-595 3-110 (281)
178 1dce_A Protein (RAB geranylger 98.0 0.00015 5.2E-09 79.6 18.9 168 438-609 44-244 (567)
179 4gcn_A Protein STI-1; structur 98.0 2.4E-05 8.4E-10 67.2 9.9 31 559-589 85-115 (127)
180 4b4t_Q 26S proteasome regulato 98.0 7.8E-05 2.7E-09 79.5 15.9 163 456-618 57-243 (434)
181 1ihg_A Cyclophilin 40; ppiase 98.0 2.6E-05 9E-10 81.0 11.6 137 454-612 223-362 (370)
182 3rkv_A Putative peptidylprolyl 98.0 1.6E-05 5.4E-10 71.8 8.6 77 525-601 63-142 (162)
183 3k9i_A BH0479 protein; putativ 98.0 7E-06 2.4E-10 69.5 5.8 94 501-595 2-99 (117)
184 3q7a_A Farnesyltransferase alp 98.0 0.0017 5.7E-08 65.6 24.0 228 366-599 67-345 (349)
185 2l6j_A TPR repeat-containing p 98.0 3.6E-06 1.2E-10 70.2 3.9 93 523-615 2-102 (111)
186 3ro3_A PINS homolog, G-protein 98.0 4.1E-05 1.4E-09 68.4 11.0 93 527-619 51-157 (164)
187 2xev_A YBGF; tetratricopeptide 98.0 8.5E-05 2.9E-09 63.6 12.4 104 496-599 9-118 (129)
188 1ihg_A Cyclophilin 40; ppiase 97.9 4.6E-05 1.6E-09 79.1 12.1 112 489-619 223-335 (370)
189 2hr2_A Hypothetical protein; a 97.9 2.6E-05 8.7E-10 68.7 8.4 71 527-597 59-142 (159)
190 3ro3_A PINS homolog, G-protein 97.9 5.8E-05 2E-09 67.4 11.1 132 456-587 11-159 (164)
191 2if4_A ATFKBP42; FKBP-like, al 97.9 2.6E-05 8.9E-10 80.0 9.1 147 455-621 180-329 (338)
192 2if4_A ATFKBP42; FKBP-like, al 97.9 2.4E-05 8.1E-10 80.4 8.6 114 491-621 181-294 (338)
193 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 6.1E-05 2.1E-09 80.9 11.7 96 525-620 268-380 (457)
194 1na3_A Designed protein CTPR2; 97.8 5.7E-05 1.9E-09 60.0 8.5 81 525-605 9-91 (91)
195 3n71_A Histone lysine methyltr 97.8 0.0001 3.5E-09 79.0 12.5 125 499-623 319-467 (490)
196 4b4t_Q 26S proteasome regulato 97.8 0.00028 9.5E-09 75.1 14.8 158 462-619 12-203 (434)
197 2kat_A Uncharacterized protein 97.7 6.9E-05 2.4E-09 62.9 7.7 77 543-619 3-81 (115)
198 3ma5_A Tetratricopeptide repea 97.7 9.7E-05 3.3E-09 60.2 8.2 64 556-619 6-69 (100)
199 1zu2_A Mitochondrial import re 97.7 2E-05 6.7E-10 69.2 4.1 84 537-620 14-120 (158)
200 1zu2_A Mitochondrial import re 97.5 0.00011 3.7E-09 64.5 5.7 89 502-592 15-126 (158)
201 3n71_A Histone lysine methyltr 97.4 0.00061 2.1E-08 73.0 11.5 115 534-666 318-450 (490)
202 1dce_A Protein (RAB geranylger 97.4 0.0018 6.1E-08 71.1 15.4 149 467-619 42-220 (567)
203 3ly7_A Transcriptional activat 97.4 0.0043 1.5E-07 62.5 16.2 139 451-591 191-344 (372)
204 3qwp_A SET and MYND domain-con 97.3 0.00058 2E-08 72.0 9.7 114 534-665 296-427 (429)
205 2kat_A Uncharacterized protein 97.3 0.0007 2.4E-08 56.5 8.0 81 507-589 3-85 (115)
206 3bee_A Putative YFRE protein; 97.3 0.0012 4E-08 52.6 8.8 68 555-622 4-74 (93)
207 2l6j_A TPR repeat-containing p 97.3 0.00067 2.3E-08 56.0 7.6 66 555-620 2-67 (111)
208 1na3_A Designed protein CTPR2; 97.2 0.0017 5.7E-08 51.1 9.3 64 556-619 8-71 (91)
209 1klx_A Cysteine rich protein B 97.2 0.0027 9.2E-08 55.1 11.2 110 468-586 9-126 (138)
210 1klx_A Cysteine rich protein B 97.1 0.0031 1.1E-07 54.6 10.3 113 502-622 8-128 (138)
211 1pc2_A Mitochondria fission pr 97.0 0.0028 9.7E-08 54.8 9.3 91 555-671 30-125 (152)
212 3qww_A SET and MYND domain-con 97.0 0.00088 3E-08 70.5 7.0 62 558-619 341-410 (433)
213 1wy6_A Hypothetical protein ST 97.0 0.043 1.5E-06 45.5 15.0 140 465-623 18-157 (172)
214 3ma5_A Tetratricopeptide repea 97.0 0.0011 3.7E-08 53.8 6.0 66 524-589 6-73 (100)
215 2kc7_A BFR218_protein; tetratr 97.0 0.0026 9E-08 51.1 8.2 64 531-594 6-72 (99)
216 3qww_A SET and MYND domain-con 96.8 0.006 2E-07 64.1 11.8 94 502-595 311-425 (433)
217 2kc7_A BFR218_protein; tetratr 96.7 0.0036 1.2E-07 50.3 7.3 58 563-620 6-64 (99)
218 3qwp_A SET and MYND domain-con 96.7 0.013 4.4E-07 61.7 12.9 99 499-597 297-416 (429)
219 3u64_A Protein TP_0956; tetrat 96.2 0.014 4.9E-07 56.2 8.9 87 541-627 179-276 (301)
220 3mkq_A Coatomer beta'-subunit; 96.2 0.085 2.9E-06 60.9 17.3 101 219-336 661-761 (814)
221 3ly7_A Transcriptional activat 96.2 0.045 1.5E-06 55.1 12.6 132 485-620 190-339 (372)
222 3bee_A Putative YFRE protein; 96.2 0.023 7.8E-07 45.0 8.5 76 522-598 3-83 (93)
223 2v5f_A Prolyl 4-hydroxylase su 96.1 0.038 1.3E-06 44.8 9.8 74 524-597 4-86 (104)
224 3mkq_A Coatomer beta'-subunit; 96.0 0.051 1.7E-06 62.8 13.9 152 435-615 611-773 (814)
225 1nzn_A CGI-135 protein, fissio 95.9 0.038 1.3E-06 45.9 9.0 65 555-619 33-102 (126)
226 1pc2_A Mitochondria fission pr 95.7 0.035 1.2E-06 48.0 7.9 91 504-596 13-110 (152)
227 3lvg_A Clathrin heavy chain 1; 95.5 0.0034 1.1E-07 64.5 1.2 432 109-613 54-534 (624)
228 1y8m_A FIS1; mitochondria, unk 95.4 0.29 1E-05 41.3 12.2 91 554-670 36-130 (144)
229 3mkq_B Coatomer subunit alpha; 94.9 0.48 1.6E-05 42.0 13.1 127 433-583 15-141 (177)
230 3lvg_A Clathrin heavy chain 1; 94.8 0.00051 1.8E-08 70.3 -7.2 262 208-514 52-316 (624)
231 3mkq_B Coatomer subunit alpha; 93.5 2.4 8.4E-05 37.5 14.4 104 219-339 14-117 (177)
232 2v5f_A Prolyl 4-hydroxylase su 93.4 0.56 1.9E-05 37.7 9.8 64 556-619 4-74 (104)
233 3o48_A Mitochondria fission 1 93.2 0.32 1.1E-05 40.5 7.8 64 556-619 39-106 (134)
234 1nzn_A CGI-135 protein, fissio 93.0 1.1 3.9E-05 37.1 10.8 74 523-596 33-113 (126)
235 1qsa_A Protein (soluble lytic 92.9 13 0.00043 40.7 26.4 123 468-597 228-355 (618)
236 4gns_B Protein CSD3, chitin bi 92.8 1.1 3.8E-05 49.9 14.0 54 565-618 345-398 (754)
237 4h7y_A Dual specificity protei 92.4 2 6.7E-05 36.7 11.5 38 450-488 9-52 (161)
238 3u64_A Protein TP_0956; tetrat 92.1 0.2 6.8E-06 48.4 5.9 82 505-589 179-272 (301)
239 1wy6_A Hypothetical protein ST 89.9 7.7 0.00026 32.3 13.3 85 434-521 72-156 (172)
240 4h7y_A Dual specificity protei 89.4 2.2 7.4E-05 36.4 9.1 105 488-595 12-132 (161)
241 3ffl_A Anaphase-promoting comp 87.7 1.1 3.9E-05 38.9 6.5 125 483-619 12-150 (167)
242 3lpz_A GET4 (YOR164C homolog); 87.2 24 0.00084 34.7 21.4 135 111-256 37-182 (336)
243 2wpv_A GET4, UPF0363 protein Y 85.9 27 0.00093 34.1 18.1 133 111-254 35-178 (312)
244 3lpz_A GET4 (YOR164C homolog); 85.2 31 0.001 34.0 20.3 110 215-335 40-160 (336)
245 2p58_C Putative type III secre 85.2 11 0.00038 29.3 9.9 87 403-494 22-108 (116)
246 2uwj_G Type III export protein 84.9 5.1 0.00017 31.1 7.9 88 86-178 18-105 (115)
247 1y8m_A FIS1; mitochondria, unk 84.4 12 0.0004 31.6 10.8 73 522-594 36-114 (144)
248 2uwj_G Type III export protein 84.3 10 0.00036 29.4 9.4 87 403-494 21-107 (115)
249 2p58_C Putative type III secre 83.8 12 0.00042 29.1 9.6 88 86-178 19-106 (116)
250 3o48_A Mitochondria fission 1 83.3 11 0.00039 31.3 10.1 71 523-593 38-114 (134)
251 1v54_E Cytochrome C oxidase po 81.9 4.6 0.00016 31.6 6.7 63 469-533 25-87 (109)
252 2qx5_A Nucleoporin NIC96; mRNA 80.8 44 0.0015 36.6 16.7 74 366-450 307-383 (661)
253 3ffl_A Anaphase-promoting comp 80.8 8.9 0.0003 33.3 9.0 27 526-552 123-149 (167)
254 4gns_B Protein CSD3, chitin bi 80.7 8.2 0.00028 43.1 11.1 53 499-553 347-399 (754)
255 3txn_A 26S proteasome regulato 79.9 49 0.0017 33.6 15.8 57 460-516 105-166 (394)
256 3mv2_A Coatomer subunit alpha; 79.6 27 0.00093 34.0 12.9 67 540-620 185-256 (325)
257 2ff4_A Probable regulatory pro 79.4 3.7 0.00013 42.1 7.5 59 561-619 175-233 (388)
258 4ady_A RPN2, 26S proteasome re 77.8 1E+02 0.0035 35.2 29.8 114 366-482 537-657 (963)
259 1v54_E Cytochrome C oxidase po 77.5 14 0.00046 29.0 8.0 65 52-117 23-87 (109)
260 1zbp_A Hypothetical protein VP 77.3 12 0.00041 35.5 9.5 50 465-515 8-57 (273)
261 2ff4_A Probable regulatory pro 77.1 10 0.00034 38.8 10.0 66 459-525 176-245 (388)
262 4ady_A RPN2, 26S proteasome re 76.9 1.1E+02 0.0037 35.0 31.6 246 321-584 384-656 (963)
263 2wpv_A GET4, UPF0363 protein Y 75.9 62 0.0021 31.6 21.3 167 315-518 37-217 (312)
264 4b4t_P 26S proteasome regulato 74.9 73 0.0025 33.0 16.1 186 366-551 29-244 (445)
265 4fhn_B Nucleoporin NUP120; pro 74.6 16 0.00056 43.4 12.3 63 560-622 902-969 (1139)
266 2y69_E Cytochrome C oxidase su 73.6 9.6 0.00033 31.6 6.7 74 469-553 68-141 (152)
267 1wdy_A 2-5A-dependent ribonucl 71.1 42 0.0014 31.7 12.6 46 290-335 193-240 (285)
268 1zbp_A Hypothetical protein VP 66.6 8.2 0.00028 36.6 5.7 56 535-590 7-64 (273)
269 2y69_E Cytochrome C oxidase su 65.3 31 0.001 28.7 7.9 63 54-117 68-130 (152)
270 4fhn_B Nucleoporin NUP120; pro 65.2 1E+02 0.0035 36.6 16.3 144 393-544 817-990 (1139)
271 1wdy_A 2-5A-dependent ribonucl 62.8 88 0.003 29.3 13.0 19 318-336 152-170 (285)
272 3ltj_A Alpharep-4; protein eng 58.0 1E+02 0.0034 27.3 16.8 9 313-321 185-193 (201)
273 3ltj_A Alpharep-4; protein eng 57.9 1E+02 0.0035 27.3 16.7 41 216-256 34-74 (201)
274 4b4t_P 26S proteasome regulato 57.2 1.8E+02 0.0062 30.0 23.0 184 402-585 30-246 (445)
275 1qsa_A Protein (soluble lytic 55.4 2.3E+02 0.0079 30.7 31.5 351 215-611 77-470 (618)
276 4b4t_R RPN7, 26S proteasome re 53.1 44 0.0015 34.5 9.2 96 425-520 133-239 (429)
277 2qx5_A Nucleoporin NIC96; mRNA 53.1 2.3E+02 0.0079 30.9 15.0 19 319-337 451-469 (661)
278 1n11_A Ankyrin; clathrin, BAND 51.8 1E+02 0.0035 31.5 12.0 72 60-135 28-103 (437)
279 3mkr_B Coatomer subunit alpha; 51.2 48 0.0017 32.2 8.2 55 552-620 191-247 (320)
280 1n11_A Ankyrin; clathrin, BAND 51.1 2.1E+02 0.0073 29.0 16.2 16 220-235 120-135 (437)
281 1k1a_A B-cell lymphoma 3-encod 50.2 1.4E+02 0.0048 27.1 11.7 28 147-174 13-40 (241)
282 3ltm_A Alpha-REP4; protein eng 50.2 1.4E+02 0.0047 26.6 16.4 17 310-326 125-141 (211)
283 1k1a_A B-cell lymphoma 3-encod 48.6 1.3E+02 0.0045 27.3 11.2 50 85-134 17-68 (241)
284 2nsz_A Programmed cell death p 47.5 76 0.0026 26.2 8.0 64 426-489 10-78 (129)
285 4b4t_R RPN7, 26S proteasome re 47.3 1.4E+02 0.0049 30.6 12.0 96 456-551 133-234 (429)
286 3ltm_A Alpha-REP4; protein eng 45.6 1.6E+02 0.0056 26.1 16.5 8 217-224 133-140 (211)
287 3hra_A Ankyrin repeat family p 44.4 1.2E+02 0.0042 26.5 9.9 17 120-136 13-29 (201)
288 3eu9_A Huntingtin-interacting 44.4 1.1E+02 0.0039 27.6 10.0 22 115-136 45-66 (240)
289 3jxi_A Vanilloid receptor-rela 43.4 56 0.0019 30.5 7.7 89 150-238 12-118 (260)
290 3esl_A Checkpoint serine/threo 42.5 1.9E+02 0.0065 26.0 12.5 104 543-672 62-171 (202)
291 2ion_A PDCD4, programmed cell 37.9 75 0.0026 27.1 6.6 63 426-488 12-79 (152)
292 2nsz_A Programmed cell death p 36.3 1.6E+02 0.0053 24.3 8.2 63 214-276 11-78 (129)
293 3esl_A Checkpoint serine/threo 36.1 2.4E+02 0.0082 25.3 11.1 67 456-524 82-149 (202)
294 2l0z_A Glycoprotein G2; zinc-b 36.1 11 0.00039 23.4 0.8 18 737-754 11-29 (42)
295 3eiq_C Programmed cell death p 35.8 3.4E+02 0.012 26.9 15.5 26 243-268 56-81 (358)
296 3kea_A K1L; tropism, ANK repea 35.7 1.9E+02 0.0064 27.4 10.2 49 82-134 36-84 (285)
297 3eiq_C Programmed cell death p 35.0 3.5E+02 0.012 26.8 13.5 60 457-517 220-281 (358)
298 2r9g_A AAA ATPase, central reg 34.9 2E+02 0.0069 25.7 8.8 65 346-419 15-84 (204)
299 3bqo_A Telomeric repeat-bindin 34.6 1.8E+02 0.0061 25.9 8.3 57 541-597 94-157 (211)
300 3b7b_A Euchromatic histone-lys 33.4 2.7E+02 0.0091 25.0 10.8 144 217-381 81-235 (237)
301 3kea_A K1L; tropism, ANK repea 32.6 2.2E+02 0.0075 26.9 10.1 55 281-336 163-217 (285)
302 3hra_A Ankyrin repeat family p 32.3 2.2E+02 0.0075 24.7 9.6 175 150-334 12-198 (201)
303 4gq2_M Nucleoporin NUP120; bet 32.1 3.4E+02 0.012 31.3 13.0 85 495-585 816-925 (950)
304 3eu9_A Huntingtin-interacting 31.7 2.8E+02 0.0096 24.8 10.7 19 217-235 46-64 (240)
305 2zu6_B Programmed cell death p 31.6 3.6E+02 0.012 26.0 14.1 65 457-523 169-235 (307)
306 3txn_A 26S proteasome regulato 31.4 4.2E+02 0.014 26.7 28.0 282 314-622 22-345 (394)
307 3ljn_A Hypothetical protein; a 30.7 1.4E+02 0.0049 29.5 8.7 55 117-171 58-112 (364)
308 4a1g_A Mitotic checkpoint seri 30.5 2.5E+02 0.0086 23.8 8.8 49 574-622 82-132 (152)
309 3twe_A Alpha4H; unknown functi 29.4 49 0.0017 17.6 2.4 17 650-666 3-19 (27)
310 4g8k_A 2-5A-dependent ribonucl 29.3 3.9E+02 0.013 25.7 13.5 103 297-422 220-328 (337)
311 2d2s_A Exocyst complex compone 29.3 1.9E+02 0.0066 26.7 8.4 87 461-551 25-117 (235)
312 3ljn_A Hypothetical protein; a 29.0 1.5E+02 0.0052 29.3 8.5 19 318-336 177-195 (364)
313 1oyz_A Hypothetical protein YI 29.0 3.6E+02 0.012 25.1 20.1 18 310-327 205-222 (280)
314 3jxi_A Vanilloid receptor-rela 28.9 1E+02 0.0035 28.6 6.9 90 250-339 11-118 (260)
315 2lo3_A SAGA-associated factor 28.6 20 0.00069 22.5 1.0 10 711-720 16-25 (44)
316 3bge_A Predicted ATPase; struc 28.3 2.2E+02 0.0077 25.3 8.0 48 348-403 10-57 (201)
317 2ion_A PDCD4, programmed cell 28.1 1.5E+02 0.0051 25.3 6.8 64 213-276 12-80 (152)
318 3re2_A Predicted protein; meni 25.8 2.1E+02 0.0073 28.1 7.9 82 523-609 294-393 (472)
319 2wvi_A Mitotic checkpoint seri 25.3 3.3E+02 0.011 23.5 8.8 81 541-624 46-129 (164)
320 2r9g_A AAA ATPase, central reg 25.0 3.7E+02 0.013 24.0 9.4 44 460-504 17-63 (204)
321 2rfa_A Transient receptor pote 24.6 3.7E+02 0.013 23.9 10.8 15 120-134 11-25 (232)
322 2d2s_A Exocyst complex compone 24.5 2.5E+02 0.0086 25.9 8.3 87 532-620 25-120 (235)
323 3ctd_A Putative ATPase, AAA fa 24.4 3.1E+02 0.011 24.7 8.3 68 344-419 34-106 (213)
324 1oyz_A Hypothetical protein YI 24.4 4.3E+02 0.015 24.5 20.7 62 523-588 204-265 (280)
325 3ygs_P Procaspase 9; apoptosis 24.0 64 0.0022 25.0 3.5 38 123-160 51-88 (97)
326 2pnn_A Transient receptor pote 23.8 2E+02 0.0069 26.8 8.0 20 317-336 236-255 (273)
327 2k0q_A Putative uncharacterize 23.8 22 0.00074 25.3 0.6 23 731-753 8-30 (74)
328 4b4t_S RPN3, 26S proteasome re 23.5 2E+02 0.0069 30.2 8.0 61 489-551 231-296 (523)
329 3aji_A 26S proteasome non-ATPa 22.9 2.7E+02 0.0093 24.8 8.5 20 116-135 10-29 (231)
330 3ygs_P Procaspase 9; apoptosis 22.9 1.1E+02 0.0037 23.7 4.6 39 437-475 51-89 (97)
331 1qc6_A EVH1 domain from ENA/VA 22.9 27 0.00091 29.1 1.1 41 703-751 44-88 (130)
332 2zu6_B Programmed cell death p 22.3 2.4E+02 0.0081 27.4 7.9 27 214-240 7-33 (307)
333 3bu8_A Telomeric repeat-bindin 22.3 3.3E+02 0.011 24.6 7.9 47 505-551 88-140 (235)
334 3d9h_A CDNA FLJ77766, highly s 21.6 2.9E+02 0.01 26.0 8.7 21 316-336 224-244 (285)
335 4g8k_A 2-5A-dependent ribonucl 21.0 5.5E+02 0.019 24.5 13.5 80 433-525 246-329 (337)
336 1bd8_A P19INK4D CDK4/6 inhibit 20.7 2.1E+02 0.0073 23.5 6.8 16 150-165 9-24 (156)
337 2p1h_A APAF-1, apoptotic prote 20.6 2.8E+02 0.0096 20.9 8.0 61 409-473 26-86 (94)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.5e-41 Score=385.08 Aligned_cols=480 Identities=9% Similarity=-0.054 Sum_probs=401.9
Q ss_pred hhcCCChHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccCChHHHHHHH
Q 004369 119 YGKCGNMEEAQKVFDNLPRINVVSWTSLISGYVQNSQPELAIHVFLDMLEAGNYPTNVTLGTALTACSSLESIRLGKQIH 198 (758)
Q Consensus 119 ~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 198 (758)
+.+.|.+..+...|+.++.+++..|+.++..|.+.|++++|+.+|++|.. ..|+..++..+..+|...|+++.|..++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 140 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLL 140 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHH
Confidence 45677788888999999988999999999999999999999999999985 4688899999999999999999999999
Q ss_pred HHHHHhCCCCChhHHHHHHHHHhhcCChHHHHHHHhccCCC-------------------CcchHHHHHHHHhhCCChhh
Q 004369 199 AYVVKYQTEDDTSVGNSLCSLYSTCGSLNSAIKAFNRIREK-------------------NVMSWTTVIGACGENGEAVQ 259 (758)
Q Consensus 199 ~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~-------------------~~~~~~~li~~~~~~g~~~~ 259 (758)
+.+... +++..+++.++.+|.++|++++|.++|+++... ++.+|+.++.+|.+.|++++
T Consensus 141 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 218 (597)
T 2xpi_A 141 TKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDR 218 (597)
T ss_dssp HHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHH
Confidence 988643 678899999999999999999999999965433 37899999999999999999
Q ss_pred HHHHHHHHHHCCCCCChh-hHHHHHHHHcccCChHH--HHHH-HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHc
Q 004369 260 GLRFFSKMLSEGIQPNEF-TLTSISSVCGTMLSLRV--GAQV-HSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFD 335 (758)
Q Consensus 260 A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~--a~~~-~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 335 (758)
|+++|++|.+.+ |+.. .+..+...+...+..+. +..+ +..+...+......+++.++.+|.+.|++++|.++|+
T Consensus 219 A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 296 (597)
T 2xpi_A 219 AKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS 296 (597)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 999999998854 5443 33333333322222111 1111 4445555555566778888999999999999999999
Q ss_pred cCCC--CCeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHH
Q 004369 336 GMSH--VNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHAL 413 (758)
Q Consensus 336 ~m~~--~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~ 413 (758)
++.+ ++..+|+.++.+|.+ .|++++|+++|++|.+.+ +.+..++..++.++...|++++|.+++..
T Consensus 297 ~~~~~~~~~~~~~~l~~~~~~-----------~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 364 (597)
T 2xpi_A 297 SINGLEKSSDLLLCKADTLFV-----------RSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISND 364 (597)
T ss_dssp TSTTGGGCHHHHHHHHHHHHH-----------TTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HhhcCCchHHHHHHHHHHHHH-----------hcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 9987 888999999999999 999999999999998764 33778899999999999999999999999
Q ss_pred HHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 004369 414 TLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMS---TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQV 490 (758)
Q Consensus 414 ~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 490 (758)
+.+.. +.+..+++.++.+|.++|++++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|++|.+.+ +.+..
T Consensus 365 ~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 442 (597)
T 2xpi_A 365 LVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHL 442 (597)
T ss_dssp HHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSH
T ss_pred HHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchH
Confidence 98654 5678899999999999999999999999875 4578899999999999999999999999999863 44788
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-------CCCCC--HHHHH
Q 004369 491 TFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-------DFEPN--EVIWS 561 (758)
Q Consensus 491 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~--~~~~~ 561 (758)
++..++.+|.+.|++++|.++|+.+.+. .+.+..+|+.++.+|.+.|++++|.++|+++ +..|+ ..+|.
T Consensus 443 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~ 520 (597)
T 2xpi_A 443 PYLFLGMQHMQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWA 520 (597)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHH
Confidence 9999999999999999999999999873 3446889999999999999999999999998 45787 78999
Q ss_pred HHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhhC
Q 004369 562 VFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREE 620 (758)
Q Consensus 562 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 620 (758)
.++.+|.+.|++++|...++++++.+|+++.+|..++.+|.+.|++++|.+.++++.+.
T Consensus 521 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 521 NLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999873
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.9e-39 Score=362.78 Aligned_cols=497 Identities=8% Similarity=-0.003 Sum_probs=408.9
Q ss_pred CCCCCcchHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChHHHHHHHccCC--CCCcchHHHH
Q 004369 69 GPKVQTSSYVSLLQECVNRKSLSNAEIIHAHIVKTGSHQDFFVMTFLVNVYGKCGNMEEAQKVFDNLP--RINVVSWTSL 146 (758)
Q Consensus 69 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~--~~~~~~~~~l 146 (758)
.+.++...|+.++..|.+.|+++.|..+++.+.+. .|+..++..++.+|.+.|++++|..+|+++. .++..+|+.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l 156 (597)
T 2xpi_A 79 DSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLA 156 (597)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHH
Confidence 34467788999999999999999999999999865 4677888999999999999999999999984 5788899999
Q ss_pred HHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHhhcCCh
Q 004369 147 ISGYVQNSQPELAIHVFLDMLEAGNYPTNVTLGTALTACSSLESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGSL 226 (758)
Q Consensus 147 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~ 226 (758)
+.+|.+.|++++|+++|+++. |+.. ...++...++. ..+.+.+..+++.++.+|.+.|++
T Consensus 157 ~~~~~~~g~~~~A~~~~~~~~-----~~~~----~~~~~~~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~ 216 (597)
T 2xpi_A 157 AFCLVKLYDWQGALNLLGETN-----PFRK----DEKNANKLLMQ-----------DGGIKLEASMCYLRGQVYTNLSNF 216 (597)
T ss_dssp HHHHHHTTCHHHHHHHHCSSC-----TTC--------------CC-----------CSSCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhhHHHHHHHHhccC-----Cccc----ccccccccccc-----------ccccchhHHHHHHHHHHHHHcCCH
Confidence 999999999999999998532 2220 01111111111 123455678888999999999999
Q ss_pred HHHHHHHhccCCCC---cchHHHHHHHHhhCCChhhHHH--H-HHHHHHCCCCCChhhHHHHHHHHcccCChHHHHHHHH
Q 004369 227 NSAIKAFNRIREKN---VMSWTTVIGACGENGEAVQGLR--F-FSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHS 300 (758)
Q Consensus 227 ~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~--l-~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 300 (758)
++|.++|+++.+.+ ...|..+...+...+..+.+.. + +..+...+..++..+|..++..+.+.|+++.|.+++.
T Consensus 217 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 296 (597)
T 2xpi_A 217 DRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS 296 (597)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 99999999887533 3345555544443333222221 1 5555555555666677777888889999999999999
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCC---CCeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHH
Q 004369 301 LGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSH---VNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFS 377 (758)
Q Consensus 301 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~ 377 (758)
.+.+. +++..+++.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+ .|+.++|..+|+
T Consensus 297 ~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-----------~g~~~~A~~~~~ 363 (597)
T 2xpi_A 297 SINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHE-----------SGEKNKLYLISN 363 (597)
T ss_dssp TSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHH-----------HTCHHHHHHHHH
T ss_pred HhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHH-----------hCCHHHHHHHHH
Confidence 88766 58899999999999999999999999998853 467789999999999 999999999999
Q ss_pred HhHhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcC---CCCh
Q 004369 378 KLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMS---TRTL 454 (758)
Q Consensus 378 ~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~---~~~~ 454 (758)
+|... .+.+..++..+...+.+.|++++|.+++..+.+.. +.+..+++.++.+|.+.|++++|.++|+++. ..+.
T Consensus 364 ~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 441 (597)
T 2xpi_A 364 DLVDR-HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTH 441 (597)
T ss_dssp HHHHH-CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCS
T ss_pred HHHhh-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch
Confidence 99864 24578889999999999999999999999998864 4568899999999999999999999999875 4477
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhc---CCCCC--HHHHH
Q 004369 455 ISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEY---KIKPV--MDHYM 529 (758)
Q Consensus 455 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~--~~~~~ 529 (758)
.+|+.++.+|.+.|++++|+++|++|.+.. +.+..+|..+...|.+.|++++|.++|+++.+.. +..|+ ..+|.
T Consensus 442 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~ 520 (597)
T 2xpi_A 442 LPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWA 520 (597)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHH
Confidence 899999999999999999999999999863 3468899999999999999999999999997732 66787 78999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhh
Q 004369 530 CLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVS 603 (758)
Q Consensus 530 ~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 603 (758)
.++.+|.+.|++++|.+.++++ ...| +..+|..+..+|...|++++|.+.++++++++|+++..+..|+++|..
T Consensus 521 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 521 NLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 9999999999999999999998 4455 788999999999999999999999999999999999999999998854
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=4.3e-27 Score=255.41 Aligned_cols=184 Identities=14% Similarity=0.178 Sum_probs=175.2
Q ss_pred eechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHhcccc---------hHHHHHHHHH
Q 004369 343 VTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVA---------LEQGEQIHAL 413 (758)
Q Consensus 343 ~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~---------~~~a~~i~~~ 413 (758)
..++.+|.+|++ .|+.++|+++|++|.+.|++||..||+++|.+|+..+. ++.|.++|+.
T Consensus 27 ~~l~~~id~c~k-----------~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~ 95 (501)
T 4g26_A 27 ALLKQKLDMCSK-----------KGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQ 95 (501)
T ss_dssp HHHHHHHHHTTT-----------SCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-----------CCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHH
Confidence 357888999999 99999999999999999999999999999999987554 7889999999
Q ss_pred HHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcC----CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 004369 414 TLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMS----TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQ 489 (758)
Q Consensus 414 ~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 489 (758)
|.+.|+.||..+||+||++|++.|++++|.++|++|. .||..+||+||.+|++.|+.++|.++|++|.+.|+.||.
T Consensus 96 M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~ 175 (501)
T 4g26_A 96 MIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEE 175 (501)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCH
Confidence 9999999999999999999999999999999999997 579999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHc
Q 004369 490 VTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRL 538 (758)
Q Consensus 490 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 538 (758)
.||++||.+|++.|++++|.++|++|.+ .+..|+..+|+.+++.|...
T Consensus 176 ~ty~~Li~~~~~~g~~d~A~~ll~~Mr~-~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 176 PELAALLKVSMDTKNADKVYKTLQRLRD-LVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-HTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHHHH-hCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999988 49999999999999998764
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=1.1e-24 Score=232.40 Aligned_cols=369 Identities=12% Similarity=0.110 Sum_probs=259.1
Q ss_pred HhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHhhcCChHHHHHHHhccCC---CCcchHHHHHHHHhhCCChhhH
Q 004369 184 ACSSLESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGSLNSAIKAFNRIRE---KNVMSWTTVIGACGENGEAVQG 260 (758)
Q Consensus 184 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A 260 (758)
.+.+.|++++|.+.+..+.+.. +.+...+..+...+...|++++|...++...+ .+..+|+.+...|.+.|++++|
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A 86 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 3445566666666666665543 22334445555566666666666666655433 2344566666666666666666
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCC-
Q 004369 261 LRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSH- 339 (758)
Q Consensus 261 ~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~- 339 (758)
++.|+++.+. .|+ +...+..+...|.+.|++++|.+.|+++..
T Consensus 87 ~~~~~~al~~--~p~----------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 130 (388)
T 1w3b_A 87 IEHYRHALRL--KPD----------------------------------FIDGYINLAAALVAAGDMEGAVQAYVSALQY 130 (388)
T ss_dssp HHHHHHHHHH--CTT----------------------------------CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHc--Ccc----------------------------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6666665542 232 233344455555555555555555544432
Q ss_pred -CC-eeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHc
Q 004369 340 -VN-LVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKT 417 (758)
Q Consensus 340 -~~-~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~ 417 (758)
|+ ...|..+...+.. .|++++|++.|+++.+.. +.+..++..+...+...|++++|...++.+.+.
T Consensus 131 ~p~~~~~~~~l~~~~~~-----------~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 198 (388)
T 1w3b_A 131 NPDLYCVRSDLGNLLKA-----------LGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL 198 (388)
T ss_dssp CTTCTHHHHHHHHHHHT-----------TSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHH-----------ccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 22 2233444444444 566666666666665531 223456666666666667777777766666665
Q ss_pred CCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHH
Q 004369 418 GFLSDVVVGTALVNMYKKCGRIERASRVFVEMS---TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPN-QVTFV 493 (758)
Q Consensus 418 ~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~ 493 (758)
. +.+...+..+...|...|++++|...|++.. +.+..+|..+...|...|++++|++.|+++.+. .|+ ..++.
T Consensus 199 ~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~ 275 (388)
T 1w3b_A 199 D-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYC 275 (388)
T ss_dssp C-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHH
Confidence 3 3456677788888888889999888888654 446788999999999999999999999999984 454 66888
Q ss_pred HHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcC
Q 004369 494 GALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHG 571 (758)
Q Consensus 494 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g 571 (758)
.+..++.+.|++++|...|+.+.+. .+.+...+..+...+.+.|++++|.+.++++ ...| +..+|..+...+.+.|
T Consensus 276 ~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 353 (388)
T 1w3b_A 276 NLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQG 353 (388)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 8999999999999999999999873 4556888999999999999999999999998 6666 5778999999999999
Q ss_pred ChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCC
Q 004369 572 NMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGR 606 (758)
Q Consensus 572 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 606 (758)
++++|...+++++++.|+++..|..++.+|...|+
T Consensus 354 ~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 354 KLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp CCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 99999999999999999999999999999887764
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=5.3e-27 Score=254.68 Aligned_cols=212 Identities=11% Similarity=0.049 Sum_probs=166.8
Q ss_pred hHHHHHHHHHHCCCCCCh-hhHHHHHHHHcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccC
Q 004369 259 QGLRFFSKMLSEGIQPNE-FTLTSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGM 337 (758)
Q Consensus 259 ~A~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 337 (758)
.+..+.+++.+.++.+.. ..++.+|.+|++.|+++.|.++|+.|.+.|+.||..+||+||.+|++.+...++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------- 80 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------- 80 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-------
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-------
Confidence 344455555555544332 345566666666666666666666666666666666667777776665543211
Q ss_pred CCCCeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHc
Q 004369 338 SHVNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKT 417 (758)
Q Consensus 338 ~~~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~ 417 (758)
.+ .+..++|.++|++|...|+.||..||+++|.+|++.|++++|.++++.|.+.
T Consensus 81 ---------------~~-----------~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~ 134 (501)
T 4g26_A 81 ---------------SP-----------NPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAF 134 (501)
T ss_dssp ---------------SC-----------CHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT
T ss_pred ---------------hh-----------cchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 12 6677899999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcC----CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 004369 418 GFLSDVVVGTALVNMYKKCGRIERASRVFVEMS----TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFV 493 (758)
Q Consensus 418 ~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 493 (758)
|+.||..+||+||.+|++.|++++|.++|++|. .||..+|++||.+|++.|+.++|.++|++|.+.|..|+..||+
T Consensus 135 g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~ 214 (501)
T 4g26_A 135 GIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFD 214 (501)
T ss_dssp TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHH
T ss_pred CCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHH
Confidence 999999999999999999999999999999997 6799999999999999999999999999999999999999999
Q ss_pred HHHHHHhccc
Q 004369 494 GALAACSNAG 503 (758)
Q Consensus 494 ~ll~a~~~~g 503 (758)
.++..++..+
T Consensus 215 ~l~~~F~s~~ 224 (501)
T 4g26_A 215 MIEEWFKSEV 224 (501)
T ss_dssp HHHHHHHSHH
T ss_pred HHHHHHhcCc
Confidence 9999887654
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.94 E-value=7.6e-24 Score=225.75 Aligned_cols=350 Identities=16% Similarity=0.140 Sum_probs=295.1
Q ss_pred HHHhhCCChhhHHHHHHHHHHCCCCCCh-hhHHHHHHHHcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 004369 249 GACGENGEAVQGLRFFSKMLSEGIQPNE-FTLTSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLV 327 (758)
Q Consensus 249 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 327 (758)
..+.+.|++++|++.+.++.+. .|+. ..+..+...+...++++.+...+...++.. +.+...+..+...|.+.|++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 4456677777777777776654 2443 344445555666777777777777777654 56778899999999999999
Q ss_pred HHHHHHHccCCC--C-CeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCH-HHHHHHHHHHhcccc
Q 004369 328 DEAQKLFDGMSH--V-NLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDL-YTFSSILTICSRLVA 403 (758)
Q Consensus 328 ~~A~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~~ 403 (758)
++|...|+++.. | +..+|..+...+.+ .|++++|++.|+++.+. .|+. ..+..+...+...|+
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-----------~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~ 150 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVA-----------AGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGR 150 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-----------HSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHH-----------cCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccC
Confidence 999999998754 3 44578899999999 99999999999999875 4544 456667778888999
Q ss_pred hHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004369 404 LEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMS---TRTLISWTSMITGFANHSLSHQALQLFEDM 480 (758)
Q Consensus 404 ~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 480 (758)
+++|.+.+..+.+.. +.+..++..+...|.+.|++++|...|+++. +.+...|..+...+...|++++|+..|++.
T Consensus 151 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 229 (388)
T 1w3b_A 151 LEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRA 229 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999998864 4567889999999999999999999999876 345678999999999999999999999999
Q ss_pred HHcCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CH
Q 004369 481 LLAGVRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NE 557 (758)
Q Consensus 481 ~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~ 557 (758)
... .|+ ..++..+..++...|++++|...|+.+.+. .+.+...|..+...|.+.|++++|.+.++++ ...| +.
T Consensus 230 l~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 305 (388)
T 1w3b_A 230 LSL--SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHA 305 (388)
T ss_dssp HHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCH
T ss_pred Hhh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccH
Confidence 884 555 778889999999999999999999999863 2334778999999999999999999999998 4444 78
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369 558 VIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTRE 619 (758)
Q Consensus 558 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 619 (758)
.+|..+...+...|++++|...++++++..|+++..+..++.+|.+.|++++|...++.+.+
T Consensus 306 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 306 DSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999999999999999876
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.90 E-value=4.3e-22 Score=220.56 Aligned_cols=438 Identities=11% Similarity=-0.007 Sum_probs=278.9
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHh
Q 004369 142 SWTSLISGYVQNSQPELAIHVFLDMLEAGNYPTNVTLGTALTACSSLESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYS 221 (758)
Q Consensus 142 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~ 221 (758)
.|......+.+.|++++|+..|+++.+.. |+..++..+..++...|+++.|.+.++.+++.. +.+..++..+..+|.
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 35555666777777777777777777654 677777777777777777777777777777654 234566777777777
Q ss_pred hcCChHHHHHHHhccCC---CCcchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHHHHH
Q 004369 222 TCGSLNSAIKAFNRIRE---KNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQV 298 (758)
Q Consensus 222 ~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 298 (758)
+.|++++|...|+++.. .+......++..+........+.+.+..+...+..|+...+..-...............+
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 77777777777776643 233333444443333333333333332222222222221111110000000111111111
Q ss_pred HHHHHHhCC---------CCchhHHHHHHHHHHh---cCCHHHHHHHHccCCC-----------------CCeeechhHH
Q 004369 299 HSLGIKLGY---------ASNLRVRNSIMYLYLK---CGLVDEAQKLFDGMSH-----------------VNLVTWNAMI 349 (758)
Q Consensus 299 ~~~~~~~g~---------~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----------------~~~~~~~~li 349 (758)
...+..... +.+...+..+...+.. .|++++|...|+++.+ .+...|..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 111111100 1223444444444444 7888998888877643 1234566677
Q ss_pred HHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHH
Q 004369 350 AGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTAL 429 (758)
Q Consensus 350 ~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~L 429 (758)
..+.. .|++++|+..|+++.+.. |+...+..+...+...|+++.|...+..+.+.. +.+..++..+
T Consensus 245 ~~~~~-----------~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 310 (514)
T 2gw1_A 245 IFKFL-----------KNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHR 310 (514)
T ss_dssp HHHHH-----------SSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHH
T ss_pred HHHHH-----------CCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHH
Confidence 77777 899999999999888754 337777778888888888888888888887754 4456677888
Q ss_pred hhhHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHH
Q 004369 430 VNMYKKCGRIERASRVFVEMS---TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVY 506 (758)
Q Consensus 430 i~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 506 (758)
...|.+.|++++|...|++.. ..+...|..+...|...|++++|+..|+++.+.. +.+..++..+...+...|+++
T Consensus 311 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 389 (514)
T 2gw1_A 311 GQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFD 389 (514)
T ss_dssp HHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHH
Confidence 888888888888888888754 3456778888888888888888888888887742 224567777777888888888
Q ss_pred HHHHHHHHhhhhcCCCCC----HHHHHHHHHHHHH---cCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHH
Q 004369 507 EALGYFEMMQKEYKIKPV----MDHYMCLIDMFVR---LGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGF 577 (758)
Q Consensus 507 ~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~---~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~ 577 (758)
+|...++.+.+...-.++ ...+..+...|.+ .|++++|.+.++++ ...| +..+|..+...+...|++++|.
T Consensus 390 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~ 469 (514)
T 2gw1_A 390 KALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAI 469 (514)
T ss_dssp HHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHH
Confidence 888888887663322232 3477788888888 88888888888877 4444 5667788888888888888888
Q ss_pred HHHHHHhccCCCCchhHHHH
Q 004369 578 YAAEQLLKLKPKDCESYAML 597 (758)
Q Consensus 578 ~~~~~~~~~~p~~~~~~~~l 597 (758)
..+++++++.|+++..+..+
T Consensus 470 ~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 470 TLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHhccccHHHHHHH
Confidence 88888888888877666555
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=1.1e-21 Score=213.29 Aligned_cols=335 Identities=13% Similarity=0.035 Sum_probs=225.6
Q ss_pred hHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 004369 243 SWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYL 322 (758)
Q Consensus 243 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 322 (758)
.|..+...+.+.|++++|+.+|+++.+.. +.+..++..+..++...|+++.|...+..+++.+ +.+..++..+..+|.
T Consensus 28 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 105 (450)
T 2y4t_A 28 KHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLL 105 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHH
Confidence 44444455555555555555555544321 1233344444444444444444444444444443 334555666666677
Q ss_pred hcCCHHHHHHHHccCCCCCe------eechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCHHHHHHHHH
Q 004369 323 KCGLVDEAQKLFDGMSHVNL------VTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILT 396 (758)
Q Consensus 323 ~~g~~~~A~~~~~~m~~~~~------~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 396 (758)
+.|++++|...|+++...++ ..|..++..+.. . .+.....
T Consensus 106 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----------~-----------------------~~~~~a~ 151 (450)
T 2y4t_A 106 KQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEM-----------Q-----------------------RLRSQAL 151 (450)
T ss_dssp HTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH-----------H-----------------------HHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH-----------H-----------------------HHHHHHH
Confidence 77777777766666544221 333333332111 0 1111222
Q ss_pred HHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCCHHHH
Q 004369 397 ICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMS---TRTLISWTSMITGFANHSLSHQA 473 (758)
Q Consensus 397 a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A 473 (758)
.+...|+++.|...+..+.+.. +.+..++..++.+|.+.|++++|.+.|+++. ..+..+|..+...|...|++++|
T Consensus 152 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 230 (450)
T 2y4t_A 152 NAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELS 230 (450)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 3445566666666666665543 4466778888888888888888888888875 45678899999999999999999
Q ss_pred HHHHHHHHHcCCCCCHH-HHHHH------------HHHHhccccHHHHHHHHHHhhhhcCCCCC--HHHHHHHHHHHHHc
Q 004369 474 LQLFEDMLLAGVRPNQV-TFVGA------------LAACSNAGMVYEALGYFEMMQKEYKIKPV--MDHYMCLIDMFVRL 538 (758)
Q Consensus 474 ~~~~~~m~~~g~~p~~~-t~~~l------------l~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~ 538 (758)
+..|+++... .|+.. .+..+ ..+|.+.|++++|..+|+.+.+...-.|. ..+|..++.++.+.
T Consensus 231 ~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~ 308 (450)
T 2y4t_A 231 LSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKD 308 (450)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHC
Confidence 9999999874 55543 33333 67899999999999999999874222222 45889999999999
Q ss_pred CCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHH------------HHhhhC
Q 004369 539 GCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLL------------DIFVSA 604 (758)
Q Consensus 539 g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~------------~~~~~~ 604 (758)
|++++|++.++++ ...| +..+|..+..+|...|++++|...++++++++|+++..+..++ +.|...
T Consensus 309 g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~l 388 (450)
T 2y4t_A 309 EKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKIL 388 (450)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGS
T ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHh
Confidence 9999999999998 5556 6889999999999999999999999999999999999999999 557666
Q ss_pred C-----CchhHHHHHHH
Q 004369 605 G-----RWEDVAVVKNL 616 (758)
Q Consensus 605 g-----~~~~a~~~~~~ 616 (758)
| +.+++.+.++.
T Consensus 389 g~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 389 GVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp CSSTTCCTTHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHH
Confidence 7 33444554443
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.89 E-value=4.1e-21 Score=212.66 Aligned_cols=427 Identities=8% Similarity=-0.081 Sum_probs=311.6
Q ss_pred hHHHHHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHhhcCChHHHHHHHhccCC--C-CcchHHHHHHHHhh
Q 004369 177 TLGTALTACSSLESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGSLNSAIKAFNRIRE--K-NVMSWTTVIGACGE 253 (758)
Q Consensus 177 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~ 253 (758)
.+...-..+...|+++.|...+..+++.. |+..++..+..+|.+.|++++|...|+++.+ | +...|..+...|.+
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence 45555667788899999999999999876 6888999999999999999999999998764 3 45688889999999
Q ss_pred CCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHHHHHHHHHHHhCCCCchhHHHH---HHHHHHhcCCHHHH
Q 004369 254 NGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNS---IMYLYLKCGLVDEA 330 (758)
Q Consensus 254 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~---li~~~~~~g~~~~A 330 (758)
.|++++|+..|+++...+. ++......++..+........+.+.+..+...+..++....+. .............+
T Consensus 86 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp TTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 9999999999999988753 3444444444444333222222222222211111111100000 00000111111112
Q ss_pred HHHHccCCC---------CC-eeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHh-----CCCC--------CC
Q 004369 331 QKLFDGMSH---------VN-LVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNS-----SGMK--------PD 387 (758)
Q Consensus 331 ~~~~~~m~~---------~~-~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~-----~g~~--------p~ 387 (758)
...+..... ++ ...|......+.. +...|++++|+..|+++.+ ..-. .+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLY--------KRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKL 236 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHS--------SCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHH--------hhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHH
Confidence 222222211 11 1112111111111 0117999999999999987 3112 23
Q ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHH
Q 004369 388 LYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMS---TRTLISWTSMITGF 464 (758)
Q Consensus 388 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~ 464 (758)
..++..+...+...|+++.|...+..+.+.... ..++..+...|.+.|++++|...|+++. ..+...|..+...|
T Consensus 237 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 314 (514)
T 2gw1_A 237 AISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMN 314 (514)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHH
Confidence 456777888899999999999999999987643 8889999999999999999999999865 34667899999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 004369 465 ANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEA 544 (758)
Q Consensus 465 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 544 (758)
...|++++|+..|+++.+.. +.+..++..+...+...|++++|..+++.+.+. .+.+...+..+...|.+.|++++|
T Consensus 315 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A 391 (514)
T 2gw1_A 315 FILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKA 391 (514)
T ss_dssp HHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999853 234678888899999999999999999999874 233567889999999999999999
Q ss_pred HHHHHHc----CCCCC----HHHHHHHHHHHHH---cCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHH
Q 004369 545 FDFIKKM----DFEPN----EVIWSVFIAGCRR---HGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVV 613 (758)
Q Consensus 545 ~~~~~~m----~~~p~----~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 613 (758)
.+.++++ +..|+ ..+|..+...+.. .|++++|...++++++..|+++..+..++.+|...|++++|...
T Consensus 392 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 471 (514)
T 2gw1_A 392 LKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITL 471 (514)
T ss_dssp HHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHH
Confidence 9999987 22222 3489999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHhhh
Q 004369 614 KNLTRE 619 (758)
Q Consensus 614 ~~~m~~ 619 (758)
++...+
T Consensus 472 ~~~a~~ 477 (514)
T 2gw1_A 472 FEESAD 477 (514)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999887
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.88 E-value=3.9e-20 Score=206.10 Aligned_cols=434 Identities=9% Similarity=-0.013 Sum_probs=313.5
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 004369 141 VSWTSLISGYVQNSQPELAIHVFLDMLEAGNYPTNVTLGTALTACSSLESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLY 220 (758)
Q Consensus 141 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y 220 (758)
..|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|+++.|.+.++.+++.. +.+..++..+...|
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 456777778888888888888888888753 2356677777777778888888888888887764 33566777788888
Q ss_pred hhcCChHHHHHHHhccCCCCcchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHHHHHHH
Q 004369 221 STCGSLNSAIKAFNRIREKNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHS 300 (758)
Q Consensus 221 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 300 (758)
...|++++|...|+.+ ..+....+..+..+...+...+|+..++++.... |+..
T Consensus 104 ~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~--~~~~----------------------- 157 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKD--EGRG----------------------- 157 (537)
T ss_dssp HHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------------------------------
T ss_pred HHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhC--cccc-----------------------
Confidence 8888888888888643 3233333333445555556677777777775431 1000
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCee---echhHHHHHhhhchhhhchhhcCCChhHHHHHHH
Q 004369 301 LGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSHVNLV---TWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFS 377 (758)
Q Consensus 301 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~ 377 (758)
....|+ ...+..|....+.+.+...+......+.. .+..+...+.... .......|++++|+.+|+
T Consensus 158 ----~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~a~~~~~~A~~~~~ 226 (537)
T 3fp2_A 158 ----SQVLPS----NTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATD---EGYLVANDLLTKSTDMYH 226 (537)
T ss_dssp -----CCCCC----HHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSH---HHHHHHHHHHHHHHHHHH
T ss_pred ----ccccch----HhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhh---hhhHHHHHHHHHHHHHHH
Confidence 001111 23344455667777777777776654433 2222222222200 000001357899999999
Q ss_pred HhHhCCCCCC--------HHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhc
Q 004369 378 KLNSSGMKPD--------LYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEM 449 (758)
Q Consensus 378 ~m~~~g~~p~--------~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~ 449 (758)
++.+.. |+ ..++..+...+...|+++.|...+..+.+.. |+..++..+...|.+.|++++|...|+++
T Consensus 227 ~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 302 (537)
T 3fp2_A 227 SLLSAN--TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKA 302 (537)
T ss_dssp HHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHH
T ss_pred HHHHHC--CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 998753 33 2346666677888999999999999999864 44788889999999999999999999987
Q ss_pred C---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHH
Q 004369 450 S---TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMD 526 (758)
Q Consensus 450 ~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 526 (758)
. ..+..+|..+...|...|++++|+..|+++.+.. +.+...+..+...+...|++++|..+++.+.+. .+.+..
T Consensus 303 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~ 379 (537)
T 3fp2_A 303 VDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPE 379 (537)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTH
T ss_pred hccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChH
Confidence 5 4567889999999999999999999999999853 224678888999999999999999999999874 234567
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHc----CCCC----CHHHHHHHHHHHHHc----------CChhHHHHHHHHHhccCC
Q 004369 527 HYMCLIDMFVRLGCIEEAFDFIKKM----DFEP----NEVIWSVFIAGCRRH----------GNMELGFYAAEQLLKLKP 588 (758)
Q Consensus 527 ~~~~li~~~~~~g~~~~A~~~~~~m----~~~p----~~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p 588 (758)
.+..+...|.+.|++++|.+.++++ +..+ ....+..+...+... |++++|...++++++..|
T Consensus 380 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p 459 (537)
T 3fp2_A 380 VPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDP 459 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCC
Confidence 8899999999999999999999987 1111 223345556777777 999999999999999999
Q ss_pred CCchhHHHHHHHhhhCCCchhHHHHHHHhhhC
Q 004369 589 KDCESYAMLLDIFVSAGRWEDVAVVKNLTREE 620 (758)
Q Consensus 589 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 620 (758)
+++..+..++.+|...|++++|.+.++...+.
T Consensus 460 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 460 RSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 99999999999999999999999999998873
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.86 E-value=1.2e-19 Score=197.19 Aligned_cols=294 Identities=11% Similarity=0.029 Sum_probs=220.8
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHccCCC---CCeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCC
Q 004369 310 NLRVRNSIMYLYLKCGLVDEAQKLFDGMSH---VNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKP 386 (758)
Q Consensus 310 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p 386 (758)
+...+..+...|.+.|++++|..+|+++.+ .+...|..+...|.+ .|++++|+..|+++.+.+ +.
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~-----------~g~~~~A~~~~~~al~~~-p~ 92 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLA-----------MGKSKAALPDLTKVIQLK-MD 92 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-----------TTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-----------CCCHHHHHHHHHHHHhcC-CC
Confidence 444555555566666666666666655432 234455555555555 666666666666655532 22
Q ss_pred CHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChH---HHHhHH------------hhhHHhcCCHHHHHHHHHhcC-
Q 004369 387 DLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDV---VVGTAL------------VNMYKKCGRIERASRVFVEMS- 450 (758)
Q Consensus 387 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~---~~~~~L------------i~~y~~~g~~~~A~~~~~~~~- 450 (758)
+...+..+..++...|++++|...+..+.+.. +.+. ..+..+ ...|.+.|++++|...|+++.
T Consensus 93 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 171 (450)
T 2y4t_A 93 FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILE 171 (450)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455555556666666666666666655542 2223 333333 455889999999999999875
Q ss_pred --CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCC-HHH
Q 004369 451 --TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPV-MDH 527 (758)
Q Consensus 451 --~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~ 527 (758)
..+...|..++..|...|++++|++.|+++.+.. +.+..++..+...+...|++++|...|+.+.+. .|+ ...
T Consensus 172 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~ 247 (450)
T 2y4t_A 172 VCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRC 247 (450)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHH
T ss_pred hCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCChHHH
Confidence 4577899999999999999999999999998852 345788999999999999999999999999763 343 444
Q ss_pred HHHH------------HHHHHHcCCHHHHHHHHHHc-CCCCC-----HHHHHHHHHHHHHcCChhHHHHHHHHHhccCCC
Q 004369 528 YMCL------------IDMFVRLGCIEEAFDFIKKM-DFEPN-----EVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPK 589 (758)
Q Consensus 528 ~~~l------------i~~~~~~g~~~~A~~~~~~m-~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 589 (758)
+..+ ...+.+.|++++|.+.|+++ ...|+ ...|..+...+.+.|++++|...+++++++.|+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~ 327 (450)
T 2y4t_A 248 FAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPD 327 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 4444 88999999999999999998 55554 347888999999999999999999999999999
Q ss_pred CchhHHHHHHHhhhCCCchhHHHHHHHhhhC
Q 004369 590 DCESYAMLLDIFVSAGRWEDVAVVKNLTREE 620 (758)
Q Consensus 590 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 620 (758)
++..+..++.+|...|++++|...++.+.+.
T Consensus 328 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 328 NVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999863
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.85 E-value=1.3e-18 Score=193.64 Aligned_cols=440 Identities=7% Similarity=-0.025 Sum_probs=275.4
Q ss_pred hHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChHHHHHHHccCCC---CCcchHHHHHHHHHh
Q 004369 76 SYVSLLQECVNRKSLSNAEIIHAHIVKTGSHQDFFVMTFLVNVYGKCGNMEEAQKVFDNLPR---INVVSWTSLISGYVQ 152 (758)
Q Consensus 76 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~ 152 (758)
.+..+-..+.+.|+++.|...++.+++.. +.+...+..+...|.+.|++++|.+.|++..+ .+..+|..+...+..
T Consensus 27 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 105 (537)
T 3fp2_A 27 QLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANES 105 (537)
T ss_dssp HHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 34555566667777777777777777665 45666777777777777777777777766542 345566677777777
Q ss_pred CCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHhCC--CCChhHHHHHHHHHhhcCChHHHH
Q 004369 153 NSQPELAIHVFLDMLEAGNYPTNVTLGTALTACSSLESIRLGKQIHAYVVKYQT--EDDTSVGNSLCSLYSTCGSLNSAI 230 (758)
Q Consensus 153 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~Li~~y~~~g~~~~A~ 230 (758)
.|++++|+..|+.+.. .|+... ..+..+...+....+...+..+++... .+........+..|....+.+.+.
T Consensus 106 ~g~~~~A~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (537)
T 3fp2_A 106 LGNFTDAMFDLSVLSL---NGDFDG--ASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEV 180 (537)
T ss_dssp HTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHH
T ss_pred cCCHHHHHHHHHHHhc---CCCCCh--HHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHH
Confidence 7777777777753321 222111 112222222333445555544433210 001111122333344455555555
Q ss_pred HHHhccCCCCcc---hHHHHHHHHhhC--------CChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHHHHHH
Q 004369 231 KAFNRIREKNVM---SWTTVIGACGEN--------GEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVH 299 (758)
Q Consensus 231 ~~f~~~~~~~~~---~~~~li~~~~~~--------g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 299 (758)
..+......+.. .+..+...+... |++++|+.+|+++.+.. |+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~------------------------ 234 (537)
T 3fp2_A 181 SSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TV------------------------ 234 (537)
T ss_dssp HTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CC------------------------
T ss_pred HHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CC------------------------
Confidence 555555443332 222222222211 23344444444443321 11
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHh
Q 004369 300 SLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSHVNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKL 379 (758)
Q Consensus 300 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m 379 (758)
+..++..+..+ |..+...+.. .|++++|+..|++.
T Consensus 235 ----------~~~~~~~~~~~------------------------~~~~g~~~~~-----------~~~~~~A~~~~~~~ 269 (537)
T 3fp2_A 235 ----------DDPLRENAALA------------------------LCYTGIFHFL-----------KNNLLDAQVLLQES 269 (537)
T ss_dssp ----------CHHHHHHHHHH------------------------HHHHHHHHHH-----------TTCHHHHHHHHHHH
T ss_pred ----------cchhhHHHHHH------------------------HHHHHHHHHh-----------cccHHHHHHHHHHH
Confidence 11111111111 1222233444 77777777777777
Q ss_pred HhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcC---CCChhH
Q 004369 380 NSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMS---TRTLIS 456 (758)
Q Consensus 380 ~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~---~~~~~~ 456 (758)
.+. .|+...+..+...+...|+++.|...+..+.+.. +.+..++..+...|.+.|++++|...|++.. ..+...
T Consensus 270 ~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 346 (537)
T 3fp2_A 270 INL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYP 346 (537)
T ss_dssp HHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHH
T ss_pred Hhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 664 4556677777777788888888888888777754 4467788888999999999999999998865 345678
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCC----CHHHHHHHH
Q 004369 457 WTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKP----VMDHYMCLI 532 (758)
Q Consensus 457 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~li 532 (758)
|..+...|...|++++|+..|+++.+.. +.+...+..+...+...|++++|...|+.+.+...-.+ ....+..+.
T Consensus 347 ~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a 425 (537)
T 3fp2_A 347 YIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKA 425 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHH
Confidence 9999999999999999999999998853 33466888888899999999999999999876321111 223345566
Q ss_pred HHHHHc----------CCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHH
Q 004369 533 DMFVRL----------GCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAM 596 (758)
Q Consensus 533 ~~~~~~----------g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 596 (758)
..|.+. |++++|...++++ ...| +..+|..+...+...|++++|...+++++++.|+++.....
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 501 (537)
T 3fp2_A 426 TILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQA 501 (537)
T ss_dssp HHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHHH
T ss_pred HHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 778888 9999999999998 4455 67889999999999999999999999999999987665443
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.81 E-value=2.4e-17 Score=172.73 Aligned_cols=303 Identities=9% Similarity=-0.027 Sum_probs=207.7
Q ss_pred hhHHHHHHHHcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCC---CCeeechhHHHHHh
Q 004369 277 FTLTSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSH---VNLVTWNAMIAGHA 353 (758)
Q Consensus 277 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~ 353 (758)
..+..+...+...|+++.|...+..+++.. +.+..++..+...|...|++++|...|+++.+ .+...|..+...|.
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 344555556666667777777776666654 34455666666666666666666666665533 23345555555555
Q ss_pred hhchhhhchhhcCCChhHHHHHHHHhHhCCCCC---CHH-HHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHH
Q 004369 354 QMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKP---DLY-TFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTAL 429 (758)
Q Consensus 354 ~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p---~~~-t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~L 429 (758)
. .|++++|+..|++..+. .| +.. .+..+... .. ...+..+
T Consensus 83 ~-----------~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~-------~~----------------~~~~~~~ 126 (359)
T 3ieg_A 83 K-----------QGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKA-------DE----------------MQRLRSQ 126 (359)
T ss_dssp H-----------HTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHH-------HH----------------HHHHHHH
T ss_pred H-----------cCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHH-------HH----------------HHHHHHH
Confidence 5 66666666666666553 23 111 11111000 00 0112233
Q ss_pred hhhHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHH
Q 004369 430 VNMYKKCGRIERASRVFVEMS---TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVY 506 (758)
Q Consensus 430 i~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 506 (758)
...|...|++++|.+.|+++. +.+...|..+...+...|++++|+..++++.+.. +.+..++..+...+...|+++
T Consensus 127 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 205 (359)
T 3ieg_A 127 ALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHE 205 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 567778888888888888765 4466778888888888888888888888888742 334667778888888888888
Q ss_pred HHHHHHHHhhhhcCCCCCHHHHH------------HHHHHHHHcCCHHHHHHHHHHc-CCCCC-H----HHHHHHHHHHH
Q 004369 507 EALGYFEMMQKEYKIKPVMDHYM------------CLIDMFVRLGCIEEAFDFIKKM-DFEPN-E----VIWSVFIAGCR 568 (758)
Q Consensus 507 ~a~~~~~~~~~~~~~~p~~~~~~------------~li~~~~~~g~~~~A~~~~~~m-~~~p~-~----~~~~~ll~~~~ 568 (758)
+|...++.+.+... .+...+. .+...+.+.|++++|.+.++++ ...|+ . ..+..+...+.
T Consensus 206 ~A~~~~~~a~~~~~--~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 283 (359)
T 3ieg_A 206 LSLSEVRECLKLDQ--DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFS 283 (359)
T ss_dssp HHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCc--cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH
Confidence 88888888876322 2222222 3367788999999999999987 44453 2 23556778889
Q ss_pred HcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369 569 RHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTRE 619 (758)
Q Consensus 569 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 619 (758)
..|++++|...++++++..|+++..+..++.+|...|++++|.+.++.+.+
T Consensus 284 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 284 KDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999998876
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.79 E-value=6.1e-17 Score=169.66 Aligned_cols=331 Identities=14% Similarity=0.031 Sum_probs=260.1
Q ss_pred CcchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 004369 240 NVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMY 319 (758)
Q Consensus 240 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 319 (758)
|+..|..+...+...|++++|+..|+++.+.. +.+..++..+...+...|+++.|...+..+++.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 34567888899999999999999999998853 2356788888899999999999999999999875 556788999999
Q ss_pred HHHhcCCHHHHHHHHccCCCCCeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHh
Q 004369 320 LYLKCGLVDEAQKLFDGMSHVNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILTICS 399 (758)
Q Consensus 320 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 399 (758)
.|.+.|++++|...|++..+.++.. . ....+...+.... ....+......+.
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~-~---------------------~~~~~~~~l~~~~------~~~~~~~~a~~~~ 131 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSE-Q---------------------EEKEAESQLVKAD------EMQRLRSQALDAF 131 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCH-H---------------------HHHHHHHHHHHHH------HHHHHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcc-c---------------------ChHHHHHHHHHHH------HHHHHHHHHHHHH
Confidence 9999999999999999886532200 0 0011111111100 0112334455677
Q ss_pred cccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCCHHHHHHH
Q 004369 400 RLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMS---TRTLISWTSMITGFANHSLSHQALQL 476 (758)
Q Consensus 400 ~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~ 476 (758)
..|+++.|...+..+.+.. +.+..++..+...|.+.|++++|...|++.. ..+...|..+...|...|++++|+..
T Consensus 132 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 210 (359)
T 3ieg_A 132 DGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSE 210 (359)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8899999999999888764 4567888899999999999999999999865 34678899999999999999999999
Q ss_pred HHHHHHcCCCCC-HHHHH------------HHHHHHhccccHHHHHHHHHHhhhhcCCCCCH--HHHHHHHHHHHHcCCH
Q 004369 477 FEDMLLAGVRPN-QVTFV------------GALAACSNAGMVYEALGYFEMMQKEYKIKPVM--DHYMCLIDMFVRLGCI 541 (758)
Q Consensus 477 ~~~m~~~g~~p~-~~t~~------------~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~ 541 (758)
|++..+. .|+ ...+. .+...+.+.|++++|...++.+.+...-.+.. ..+..+...|.+.|++
T Consensus 211 ~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 288 (359)
T 3ieg_A 211 VRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKP 288 (359)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCH
Confidence 9999884 444 22222 23556889999999999999998743222211 3456688999999999
Q ss_pred HHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhh
Q 004369 542 EEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVS 603 (758)
Q Consensus 542 ~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 603 (758)
++|.+.+++. ...| +..+|..+...+...|++++|...++++++++|+++..+..|..++..
T Consensus 289 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 289 VEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 9999999998 4456 688899999999999999999999999999999999988888877654
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.77 E-value=7.5e-17 Score=166.91 Aligned_cols=286 Identities=14% Similarity=0.025 Sum_probs=221.7
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHccCCC---CCeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCC
Q 004369 308 ASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSH---VNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGM 384 (758)
Q Consensus 308 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~ 384 (758)
+.+..++..+...+...|++++|.++|+++.. .+...+..++..+.+ .|++++|+.+++++.+..
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~-----------~~~~~~A~~~~~~~~~~~- 86 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVE-----------LNKANELFYLSHKLVDLY- 86 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHH-----------HTCHHHHHHHHHHHHHHC-
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHH-----------hhhHHHHHHHHHHHHHhC-
Confidence 45556666777777777888888887777644 233344555666666 788888888888877642
Q ss_pred CCCHHHHHHHHHHHhccc-chHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcC---CCChhHHHHH
Q 004369 385 KPDLYTFSSILTICSRLV-ALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMS---TRTLISWTSM 460 (758)
Q Consensus 385 ~p~~~t~~~ll~a~~~~~-~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~l 460 (758)
+.+...+..+...+...| +++.|...+..+.+.. +.+...+..+...|...|++++|...|++.. ..+...|..+
T Consensus 87 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 165 (330)
T 3hym_B 87 PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYI 165 (330)
T ss_dssp TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 224556667777777788 7888888888877654 4456778888889999999999999988865 3355778888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcC-------CCCCHHHHHHHHH
Q 004369 461 ITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYK-------IKPVMDHYMCLID 533 (758)
Q Consensus 461 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-------~~p~~~~~~~li~ 533 (758)
...|...|++++|++.|+++.+.. +.+...+..+...+...|++++|..+++.+.+... .+.....+..+..
T Consensus 166 ~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~ 244 (330)
T 3hym_B 166 GLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGH 244 (330)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHH
Confidence 889999999999999999998752 33467788888889999999999999998876321 1334678899999
Q ss_pred HHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHh-hhCCCc
Q 004369 534 MFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIF-VSAGRW 607 (758)
Q Consensus 534 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~ 607 (758)
.|.+.|++++|.+.++++ ...| +..+|..+...+...|++++|...++++++++|+++..+..++.++ ...|+.
T Consensus 245 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 245 VCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 999999999999999987 4445 5778999999999999999999999999999999999999999988 455554
No 16
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.77 E-value=1.9e-14 Score=164.85 Aligned_cols=379 Identities=10% Similarity=0.067 Sum_probs=283.1
Q ss_pred hHHHHHHHhcccCChHHHHHHHHHHHHhC--CCCChhHHHHHHHHHhhcCChHHHHHHHhccCCCCcchHHHHHHHHhhC
Q 004369 177 TLGTALTACSSLESIRLGKQIHAYVVKYQ--TEDDTSVGNSLCSLYSTCGSLNSAIKAFNRIREKNVMSWTTVIGACGEN 254 (758)
Q Consensus 177 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~ 254 (758)
-.....+++...|...++.++++.++-.+ +..+....+.|+.+..+. +..+..+..++...-+ ...+...+...
T Consensus 987 eVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~l 1062 (1630)
T 1xi4_A 987 EVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISN 1062 (1630)
T ss_pred HhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhC
Confidence 34556777778888888888888877332 113445666677666666 4455555555544222 44466778889
Q ss_pred CChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 004369 255 GEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLF 334 (758)
Q Consensus 255 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 334 (758)
|.+++|..+|++.. -.......++. ..++++.|.++...+ .+..+|..+..++.+.|++++|.+.|
T Consensus 1063 glyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsY 1128 (1630)
T 1xi4_A 1063 ELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSY 1128 (1630)
T ss_pred CCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 99999999999852 11111222322 567788888887754 45778889999999999999999999
Q ss_pred ccCCCCCeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHH
Q 004369 335 DGMSHVNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALT 414 (758)
Q Consensus 335 ~~m~~~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~ 414 (758)
.+. .|...|.-++..+.+ .|++++|++.|...++.. +++...+.+..+|++.++++....+.
T Consensus 1129 iKA--dD~say~eVa~~~~~-----------lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI--- 1190 (1630)
T 1xi4_A 1129 IKA--DDPSSYMEVVQAANT-----------SGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI--- 1190 (1630)
T ss_pred Hhc--CChHHHHHHHHHHHH-----------cCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---
Confidence 765 566677788888888 999999999998777653 33333335888888888887644442
Q ss_pred HHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 004369 415 LKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVG 494 (758)
Q Consensus 415 ~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 494 (758)
+ .++...+..+.+.|...|++++|..+|... ..|..+...|.+.|++++|++.+++. -+..+|..
T Consensus 1191 -~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWke 1255 (1630)
T 1xi4_A 1191 -N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKE 1255 (1630)
T ss_pred -h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHH
Confidence 2 335556667899999999999999999985 48999999999999999999999876 35688888
Q ss_pred HHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHc--
Q 004369 495 ALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRH-- 570 (758)
Q Consensus 495 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~-- 570 (758)
+-.+|...|++..|...... +..+.+.+..++..|.+.|.+++|+.+++.. +.+| ....|.-|...+.+.
T Consensus 1256 v~~acve~~Ef~LA~~cgl~------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~p 1329 (1630)
T 1xi4_A 1256 VCFACVDGKEFRLAQMCGLH------IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKP 1329 (1630)
T ss_pred HHHHHhhhhHHHHHHHHHHh------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCH
Confidence 88899999999998876543 3345677889999999999999999999877 6666 455677777777664
Q ss_pred CChhHHHHHHHHHhccCC-----CCchhHHHHHHHhhhCCCchhHHH
Q 004369 571 GNMELGFYAAEQLLKLKP-----KDCESYAMLLDIFVSAGRWEDVAV 612 (758)
Q Consensus 571 g~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~a~~ 612 (758)
++..++.+.|..-..+.| .+...|..++-.|.+.|.|+.|..
T Consensus 1330 eklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1330 QKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 467778888887777766 677889999999999999999985
No 17
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.77 E-value=2.6e-17 Score=169.87 Aligned_cols=320 Identities=13% Similarity=0.095 Sum_probs=155.3
Q ss_pred hcCChHHHHHHHhccCCCCcchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHHHHHHHH
Q 004369 222 TCGSLNSAIKAFNRIREKNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSL 301 (758)
Q Consensus 222 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 301 (758)
+.|++++|.++++++..|+ +|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|..++..
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 6788999999999996654 9999999999999999999999763 6788999999999999999999998888
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHh
Q 004369 302 GIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSHVNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNS 381 (758)
Q Consensus 302 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~ 381 (758)
..+. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|.. .|.+++|...|..+
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~-----------~g~yeeA~~~Y~~a-- 148 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYD-----------EKMYDAAKLLYNNV-- 148 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C---------------------------CTTTHHHHHHHT--
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHH-----------cCCHHHHHHHHHHh--
Confidence 8774 45678899999999999999999988864 677899999999999 99999999999987
Q ss_pred CCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCCCChhHHHHHH
Q 004369 382 SGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMSTRTLISWTSMI 461 (758)
Q Consensus 382 ~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li 461 (758)
..|..+..++.+.|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.-...++
T Consensus 149 -------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv 214 (449)
T 1b89_A 149 -------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELI 214 (449)
T ss_dssp -------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHH
T ss_pred -------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHH
Confidence 37899999999999999999999887 378899999999999999999988777655 4554455789
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCC------CHHHHHHHH
Q 004369 462 TGFANHSLSHQALQLFEDMLLAGVRPN---QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKP------VMDHYMCLI 532 (758)
Q Consensus 462 ~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p------~~~~~~~li 532 (758)
..|.+.|++++|+.+++..... .+. ..|...++.+-.+.+++.+..+.|..- .+++| +..+|.-++
T Consensus 215 ~~Yek~G~~eEai~lLe~aL~l--e~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~---ini~k~~~~~~~~~~w~e~~ 289 (449)
T 1b89_A 215 NYYQDRGYFEELITMLEAALGL--ERAHMGMFTELAILYSKFKPQKMREHLELFWSR---VNIPKVLRAAEQAHLWAELV 289 (449)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTS--TTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT---SCHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH---hcCcHHHHHHHHHHHHHHHH
Confidence 9999999999999999998753 333 334444555555566777777766533 35555 467799999
Q ss_pred HHHHHcCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhccCC
Q 004369 533 DMFVRLGCIEEAFDFIKKMDFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKP 588 (758)
Q Consensus 533 ~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 588 (758)
-.|..-++++.|...+-+-+ |+..--..+.....+..+.|.--++..--++..|
T Consensus 290 ~ly~~~~e~d~A~~tm~~h~--~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p 343 (449)
T 1b89_A 290 FLYDKYEEYDNAIITMMNHP--TDAWKEGQFKDIITKVANVELYYRAIQFYLEFKP 343 (449)
T ss_dssp HHHHHTTCHHHHHHHHHHST--TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCG
T ss_pred HHHHhhchHHHHHHHHHhCC--hhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCH
Confidence 99999999999988665542 2333333444445555555554444444444433
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.74 E-value=1.8e-16 Score=167.08 Aligned_cols=282 Identities=11% Similarity=-0.020 Sum_probs=224.8
Q ss_pred HHhcCCHHHHHH-HHccCCC-------CCeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCHHHHH
Q 004369 321 YLKCGLVDEAQK-LFDGMSH-------VNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFS 392 (758)
Q Consensus 321 ~~~~g~~~~A~~-~~~~m~~-------~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 392 (758)
|.-.|++++|.. .|++... .+...|..+...+.+ .|++++|+..|+++.+.. +.+..++.
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-----------~g~~~~A~~~~~~al~~~-p~~~~~~~ 102 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQ-----------EGDLPNAVLLFEAAVQQD-PKHMEAWQ 102 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHH-----------TTCHHHHHHHHHHHHHSC-TTCHHHHH
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHH-----------CCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 334578888888 7775543 134567778888888 999999999999998863 34677888
Q ss_pred HHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCCC---ChhHHHH----------
Q 004369 393 SILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMSTR---TLISWTS---------- 459 (758)
Q Consensus 393 ~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~---------- 459 (758)
.+..++...|+++.|...+..+.+.. +.+..++..+...|.+.|++++|.+.|+++... +...+..
T Consensus 103 ~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (368)
T 1fch_A 103 YLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGL 181 (368)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC-----------
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcc
Confidence 88889999999999999999998875 557888999999999999999999999986632 2222221
Q ss_pred -----HHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHH
Q 004369 460 -----MITGFANHSLSHQALQLFEDMLLAGVRP-NQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLID 533 (758)
Q Consensus 460 -----li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 533 (758)
.+..+...|++++|+..|+++.+..... +..++..+...+...|++++|...|+.+.+. .+.+...|..+..
T Consensus 182 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~ 259 (368)
T 1fch_A 182 GPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGA 259 (368)
T ss_dssp ----CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred cHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHH
Confidence 2333448899999999999999853221 4788899999999999999999999999873 2345788999999
Q ss_pred HHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCC-----------chhHHHHHHH
Q 004369 534 MFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKD-----------CESYAMLLDI 600 (758)
Q Consensus 534 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~ 600 (758)
.|.+.|++++|.+.++++ ...| +..+|..+...+...|++++|...+++++++.|++ ...+..++.+
T Consensus 260 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~ 339 (368)
T 1fch_A 260 TLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLA 339 (368)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHH
Confidence 999999999999999998 5555 57889999999999999999999999999998887 7899999999
Q ss_pred hhhCCCchhHHHHHHHh
Q 004369 601 FVSAGRWEDVAVVKNLT 617 (758)
Q Consensus 601 ~~~~g~~~~a~~~~~~m 617 (758)
|...|++++|..+.+..
T Consensus 340 ~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 340 LSMLGQSDAYGAADARD 356 (368)
T ss_dssp HHHHTCGGGHHHHHTTC
T ss_pred HHHhCChHhHHHhHHHH
Confidence 99999999999887643
No 19
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.74 E-value=1.1e-16 Score=165.41 Aligned_cols=284 Identities=10% Similarity=0.071 Sum_probs=109.3
Q ss_pred hcCCChHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccCChHHHHHHHH
Q 004369 120 GKCGNMEEAQKVFDNLPRINVVSWTSLISGYVQNSQPELAIHVFLDMLEAGNYPTNVTLGTALTACSSLESIRLGKQIHA 199 (758)
Q Consensus 120 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 199 (758)
-+.|++++|.+.+++++.|+ +|..|..++.+.|++++|++.|.+. +|..+|..++.++...|++++|...+.
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 36788999999999997664 7999999999999999999999653 577899999999999999999999888
Q ss_pred HHHHhCCCCChhHHHHHHHHHhhcCChHHHHHHHhccCCCCcchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhH
Q 004369 200 YVVKYQTEDDTSVGNSLCSLYSTCGSLNSAIKAFNRIREKNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTL 279 (758)
Q Consensus 200 ~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 279 (758)
.+.+. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|++++|..+|..+ ..|
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~ 151 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNF 151 (449)
T ss_dssp -------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhH
Confidence 87774 45678899999999999999999988864 77789999999999999999999999987 357
Q ss_pred HHHHHHHcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCeeechhHHHHHhhhchhh
Q 004369 280 TSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSHVNLVTWNAMIAGHAQMMDLA 359 (758)
Q Consensus 280 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~ 359 (758)
..+..++.+.|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+.. ++.....++..|.+
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~-~ad~l~~lv~~Yek----- 219 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV-HADELEELINYYQD----- 219 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTTT-CHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHHh-CHhhHHHHHHHHHH-----
Confidence 78888888888888888887776 3677788888888888888888776666542 22223346667777
Q ss_pred hchhhcCCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHH--hcccchHHHHHHHHHHHHcCCCC------hHHHHhHHhh
Q 004369 360 KDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILTIC--SRLVALEQGEQIHALTLKTGFLS------DVVVGTALVN 431 (758)
Q Consensus 360 ~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~--~~~~~~~~a~~i~~~~~~~~~~~------~~~~~~~Li~ 431 (758)
.|++++|+.+++...... +.....|+-+--++ -+.+++.+..+.|. .+..+++ +..+|..++-
T Consensus 220 ------~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~--~~ini~k~~~~~~~~~~w~e~~~ 290 (449)
T 1b89_A 220 ------RGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW--SRVNIPKVLRAAEQAHLWAELVF 290 (449)
T ss_dssp ------TTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS--TTSCHHHHHHHHHTTTCHHHHHH
T ss_pred ------CCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHhcCcHHHHHHHHHHHHHHHHH
Confidence 788888888777765432 22333333333333 23333333333332 1112222 2445556666
Q ss_pred hHHhcCCHHHHHHHH
Q 004369 432 MYKKCGRIERASRVF 446 (758)
Q Consensus 432 ~y~~~g~~~~A~~~~ 446 (758)
.|.+.++++.|..+.
T Consensus 291 ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 291 LYDKYEEYDNAIITM 305 (449)
T ss_dssp HHHHTTCHHHHHHHH
T ss_pred HHHhhchHHHHHHHH
Confidence 666666666665543
No 20
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.73 E-value=1.9e-14 Score=159.53 Aligned_cols=209 Identities=9% Similarity=0.016 Sum_probs=167.8
Q ss_pred HHHHHHHHHHHcCCCChHHHHhHHhhhHHh-------cCCHH-------HHHHHHHhcCC---C-ChhHHHHHHHHHHhc
Q 004369 406 QGEQIHALTLKTGFLSDVVVGTALVNMYKK-------CGRIE-------RASRVFVEMST---R-TLISWTSMITGFANH 467 (758)
Q Consensus 406 ~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~-------~g~~~-------~A~~~~~~~~~---~-~~~~~~~li~~~~~~ 467 (758)
.+..+++.+++.. +.+..+|..++..+.+ .|+++ +|..+|++... | +...|..++..+.+.
T Consensus 256 ~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 256 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 5666777777752 5567788888888875 68877 89999998763 3 577899999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCC-HHHHHHHHHH-HHHcCCHHH
Q 004369 468 SLSHQALQLFEDMLLAGVRPNQ--VTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPV-MDHYMCLIDM-FVRLGCIEE 543 (758)
Q Consensus 468 g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~-~~~~g~~~~ 543 (758)
|++++|..+|+++.+ +.|+. ..|...+..+.+.|++++|..+|+...+. .|+ ...|...+.+ +...|+.++
T Consensus 335 g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~---~~~~~~~~~~~a~~~~~~~~~~~~ 409 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAALMEYYCSKDKSV 409 (530)
T ss_dssp TCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---TTCCTHHHHHHHHHHHHHTCCHHH
T ss_pred CCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---cCCchHHHHHHHHHHHHHcCChhH
Confidence 999999999999998 46653 47888888888999999999999999763 232 3333333322 346899999
Q ss_pred HHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCch----hHHHHHHHhhhCCCchhHHHHHHHh
Q 004369 544 AFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCE----SYAMLLDIFVSAGRWEDVAVVKNLT 617 (758)
Q Consensus 544 A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~~~a~~~~~~m 617 (758)
|.++|++. ...| +...|..++....+.|+.+.|..+++++++..|.++. .+...+......|+.+.+.++.+.+
T Consensus 410 A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 410 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 489 (530)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999987 4445 5788999999999999999999999999998877665 7777788888899999999999888
Q ss_pred hhC
Q 004369 618 REE 620 (758)
Q Consensus 618 ~~~ 620 (758)
.+.
T Consensus 490 ~~~ 492 (530)
T 2ooe_A 490 FTA 492 (530)
T ss_dssp HHH
T ss_pred HHH
Confidence 763
No 21
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.73 E-value=7.8e-16 Score=159.21 Aligned_cols=264 Identities=13% Similarity=0.011 Sum_probs=225.9
Q ss_pred CCeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCC
Q 004369 340 VNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGF 419 (758)
Q Consensus 340 ~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~ 419 (758)
.+...+..+...+.. .|++++|+++|+++.+.. +.+...+..+...+...|++++|...+..+.+..
T Consensus 20 ~~~~~~~~~a~~~~~-----------~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~- 86 (330)
T 3hym_B 20 ENLDVVVSLAERHYY-----------NCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY- 86 (330)
T ss_dssp CCCTTHHHHHHHHHH-----------TTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-
T ss_pred hhHHHHHHHHHHHHH-----------cCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-
Confidence 345566677777888 999999999999998753 2344566667788889999999999999998864
Q ss_pred CChHHHHhHHhhhHHhcC-CHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 004369 420 LSDVVVGTALVNMYKKCG-RIERASRVFVEMS---TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGA 495 (758)
Q Consensus 420 ~~~~~~~~~Li~~y~~~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 495 (758)
+.+..++..+...|...| ++++|...|++.. ..+...|..+...+...|++++|+..|+++.+.. +.+...+..+
T Consensus 87 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 165 (330)
T 3hym_B 87 PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYI 165 (330)
T ss_dssp TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHH
Confidence 456788899999999999 9999999999865 3456789999999999999999999999999853 2235677778
Q ss_pred HHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CC----------CCCHHHHHHHH
Q 004369 496 LAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DF----------EPNEVIWSVFI 564 (758)
Q Consensus 496 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~----------~p~~~~~~~ll 564 (758)
...+...|++++|..+++.+.+. .+.+...+..+...|.+.|++++|.+.++++ .. ..+..+|..+.
T Consensus 166 ~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la 243 (330)
T 3hym_B 166 GLEYGLTNNSKLAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLG 243 (330)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHH
Confidence 88999999999999999999762 3445788999999999999999999999887 11 22467899999
Q ss_pred HHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369 565 AGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTRE 619 (758)
Q Consensus 565 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 619 (758)
..+...|++++|...++++++..|+++..+..++.+|...|++++|.+.++...+
T Consensus 244 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 244 HVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999999998765
No 22
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.72 E-value=6.9e-13 Score=152.24 Aligned_cols=420 Identities=10% Similarity=0.085 Sum_probs=300.8
Q ss_pred chHHHHHHHhhcCCCcHHHHHHHHHHHHhC--CCCchhHHHHHHHHhhcCCChHHHHHHHccCCCCCcchHHHHHHHHHh
Q 004369 75 SSYVSLLQECVNRKSLSNAEIIHAHIVKTG--SHQDFFVMTFLVNVYGKCGNMEEAQKVFDNLPRINVVSWTSLISGYVQ 152 (758)
Q Consensus 75 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~ 152 (758)
.-....++++...|.+.+|.++++.++..+ +..+....+.|+....+. +.....+..++...-+ ...+...+..
T Consensus 986 eeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~ 1061 (1630)
T 1xi4_A 986 EEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAIS 1061 (1630)
T ss_pred HHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHh
Confidence 345667888889999999999999988432 223456677777666665 4455555544444222 4556778888
Q ss_pred CCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHhhcCChHHHHHH
Q 004369 153 NSQPELAIHVFLDMLEAGNYPTNVTLGTALTACSSLESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGSLNSAIKA 232 (758)
Q Consensus 153 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~ 232 (758)
.|.+++|..+|++... .....+.++. ..++++.|.++.+.+ .++.+|..+..++.+.|++++|...
T Consensus 1062 lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIds 1127 (1630)
T 1xi4_A 1062 NELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDS 1127 (1630)
T ss_pred CCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 9999999999998521 2222233332 567788888887754 4578889999999999999999999
Q ss_pred HhccCCCCcchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHHHHHHHHHHHhCCCCchh
Q 004369 233 FNRIREKNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYASNLR 312 (758)
Q Consensus 233 f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 312 (758)
|.+. .|...|..++..+.+.|++++|++.|...++.. ++....+.+.-++++.++++....+. + .++..
T Consensus 1128 YiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~a 1196 (1630)
T 1xi4_A 1128 YIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNA 1196 (1630)
T ss_pred HHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHH
Confidence 9765 677788889999999999999999998877654 44333445888888888887644442 1 44556
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHccCCCCCeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCHHHHH
Q 004369 313 VRNSIMYLYLKCGLVDEAQKLFDGMSHVNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFS 392 (758)
Q Consensus 313 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 392 (758)
.+..+.+.|...|++++|...|... ..|..+...|.+ .|++++|.+.+++. -+..+|.
T Consensus 1197 d~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvk-----------Lge~q~AIEaarKA------~n~~aWk 1254 (1630)
T 1xi4_A 1197 HIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVH-----------LGEYQAAVDGARKA------NSTRTWK 1254 (1630)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHH-----------hCCHHHHHHHHHHh------CCHHHHH
Confidence 6677999999999999999999986 378999999999 99999999999876 3567888
Q ss_pred HHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHhc--
Q 004369 393 SILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMSTR---TLISWTSMITGFANH-- 467 (758)
Q Consensus 393 ~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~-- 467 (758)
.+-.+|...|++..|...... +..+...+..++..|.+.|.+++|..+++....- ....|+-|...|++.
T Consensus 1255 ev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~p 1329 (1630)
T 1xi4_A 1255 EVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKP 1329 (1630)
T ss_pred HHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCH
Confidence 888899888888888775543 2335566778999999999999999999876533 445677777777764
Q ss_pred CCHHHHHHHHHHHHHcCCCC------CHHHHHHHHHHHhccccHHHHHHHHHHh----------hhhcCCCCCHHHHHHH
Q 004369 468 SLSHQALQLFEDMLLAGVRP------NQVTFVGALAACSNAGMVYEALGYFEMM----------QKEYKIKPVMDHYMCL 531 (758)
Q Consensus 468 g~~~~A~~~~~~m~~~g~~p------~~~t~~~ll~a~~~~g~~~~a~~~~~~~----------~~~~~~~p~~~~~~~l 531 (758)
++..+++++|..-.. ++| +...|.-+..-|.+.|+++.|....-.- .....-..+++.|...
T Consensus 1330 eklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyyka 1407 (1630)
T 1xi4_A 1330 QKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRA 1407 (1630)
T ss_pred HHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHH
Confidence 445566666653322 333 3556777777888888888887321111 0011224567777777
Q ss_pred HHHHHHcC---------------CHHHHHHHHHHcC
Q 004369 532 IDMFVRLG---------------CIEEAFDFIKKMD 552 (758)
Q Consensus 532 i~~~~~~g---------------~~~~A~~~~~~m~ 552 (758)
++-|...+ +.+++.++|++.+
T Consensus 1408 i~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~~~~ 1443 (1630)
T 1xi4_A 1408 IQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVK 1443 (1630)
T ss_pred HHHHHhhChHHHHHHHHHhhhcCChHHHHHHHHHcC
Confidence 77777666 7777777777653
No 23
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.71 E-value=2.4e-14 Score=157.05 Aligned_cols=381 Identities=9% Similarity=-0.010 Sum_probs=242.9
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHhcc----cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHhh----cCChHHHH
Q 004369 159 AIHVFLDMLEAGNYPTNVTLGTALTACSS----LESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYST----CGSLNSAI 230 (758)
Q Consensus 159 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~----~g~~~~A~ 230 (758)
++..+....+.| +...+..+-..+.. .++.+.|...+....+.| +...+..|..+|.. .++.++|.
T Consensus 26 ~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~ 99 (490)
T 2xm6_A 26 NLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAV 99 (490)
T ss_dssp CHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 344444444433 44444444444444 455555555555555542 33444445555555 55555555
Q ss_pred HHHhccCCC-CcchHHHHHHHHhh----CCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHHHHHHHHHHHh
Q 004369 231 KAFNRIREK-NVMSWTTVIGACGE----NGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKL 305 (758)
Q Consensus 231 ~~f~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 305 (758)
+.|++..+. +...+..|...|.. .+++++|+..|++..+.
T Consensus 100 ~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----------------------------------- 144 (490)
T 2xm6_A 100 IWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ----------------------------------- 144 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----------------------------------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-----------------------------------
Confidence 555544332 33344444444444 44555555555554443
Q ss_pred CCCCchhHHHHHHHHHHh----cCCHHHHHHHHccCCC-CCeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhH
Q 004369 306 GYASNLRVRNSIMYLYLK----CGLVDEAQKLFDGMSH-VNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLN 380 (758)
Q Consensus 306 g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~ 380 (758)
| +...+..|..+|.. .++.++|.+.|++..+ .+...+..+...|.+-.. ..++.++|+..|++..
T Consensus 145 ~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g-------~~~~~~~A~~~~~~a~ 214 (490)
T 2xm6_A 145 G---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLG-------VERNDAISAQWYRKSA 214 (490)
T ss_dssp T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSS-------SCCCHHHHHHHHHHHH
T ss_pred C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCC-------CCcCHHHHHHHHHHHH
Confidence 3 23334444444544 4555555555554432 233333333333332110 0566777777777776
Q ss_pred hCCCCCCHHHHHHHHHHHhc----ccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHh----cCCHHHHHHHHHhcCC-
Q 004369 381 SSGMKPDLYTFSSILTICSR----LVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKK----CGRIERASRVFVEMST- 451 (758)
Q Consensus 381 ~~g~~p~~~t~~~ll~a~~~----~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~----~g~~~~A~~~~~~~~~- 451 (758)
+.| +...+..+...+.. .++.++|...+....+.+ +...+..|..+|.. .++.++|...|++..+
T Consensus 215 ~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~ 288 (490)
T 2xm6_A 215 TSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ 288 (490)
T ss_dssp HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT
T ss_pred HCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc
Confidence 654 34455555555553 677888888888877764 44566667777777 8899999999988764
Q ss_pred CChhHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccc---cHHHHHHHHHHhhhhcCCCC
Q 004369 452 RTLISWTSMITGFANH-----SLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAG---MVYEALGYFEMMQKEYKIKP 523 (758)
Q Consensus 452 ~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~~~~~~~~~p 523 (758)
.+...+..+...|... ++.++|+..|++..+.| +...+..+...+...| ++++|.++|+...+. .
T Consensus 289 ~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~ 361 (490)
T 2xm6_A 289 GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----G 361 (490)
T ss_dssp TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----T
T ss_pred CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----C
Confidence 4667788888888887 89999999999998865 3455666666666545 889999999998873 3
Q ss_pred CHHHHHHHHHHHHH----cCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHhccCCC---Cch
Q 004369 524 VMDHYMCLIDMFVR----LGCIEEAFDFIKKMDFEPNEVIWSVFIAGCRR----HGNMELGFYAAEQLLKLKPK---DCE 592 (758)
Q Consensus 524 ~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~---~~~ 592 (758)
+...+..|..+|.. .+++++|.+.|++.-...+...+..|...+.. .++.++|...++++.+.+|+ ++.
T Consensus 362 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~ 441 (490)
T 2xm6_A 362 EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTEN 441 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHH
Confidence 56788889999988 89999999999988222367788889999988 89999999999999999854 677
Q ss_pred hHHHHHHHhhh
Q 004369 593 SYAMLLDIFVS 603 (758)
Q Consensus 593 ~~~~l~~~~~~ 603 (758)
....|+.++..
T Consensus 442 a~~~l~~~~~~ 452 (490)
T 2xm6_A 442 RNITEKKLTAK 452 (490)
T ss_dssp HHHHHTTSCHH
T ss_pred HHHHHHhcCHh
Confidence 77777666654
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.70 E-value=3.5e-16 Score=164.76 Aligned_cols=261 Identities=10% Similarity=-0.053 Sum_probs=213.3
Q ss_pred CeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCC
Q 004369 341 NLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFL 420 (758)
Q Consensus 341 ~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~ 420 (758)
+...|..+...+.+ .|++++|+..|+++.+.. +.+..++..+...+...|++++|...+..+.+.. +
T Consensus 64 ~~~~~~~~~~~~~~-----------~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p 130 (365)
T 4eqf_A 64 DWPGAFEEGLKRLK-----------EGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-P 130 (365)
T ss_dssp TCTTHHHHHHHHHH-----------HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred chhHHHHHHHHHHH-----------CCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-C
Confidence 45567788888888 999999999999998753 3467788888999999999999999999988864 4
Q ss_pred ChHHHHhHHhhhHHhcCCHHHHHHHHHhcCCCCh-------------hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-
Q 004369 421 SDVVVGTALVNMYKKCGRIERASRVFVEMSTRTL-------------ISWTSMITGFANHSLSHQALQLFEDMLLAGVR- 486 (758)
Q Consensus 421 ~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~-------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~- 486 (758)
.+..++..+...|.+.|++++|...|+++...++ ..+..+...+...|++++|+..|+++.+....
T Consensus 131 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 210 (365)
T 4eqf_A 131 NNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDM 210 (365)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSS
T ss_pred CCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCc
Confidence 5678899999999999999999999998763221 23344578899999999999999999986322
Q ss_pred CCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHH
Q 004369 487 PNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFI 564 (758)
Q Consensus 487 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll 564 (758)
++..++..+...+...|++++|..+|+.+.+. .+.+...|..+..+|.+.|++++|++.++++ ...| +..+|..+.
T Consensus 211 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 288 (365)
T 4eqf_A 211 IDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLG 288 (365)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence 15778999999999999999999999999873 3345789999999999999999999999998 5556 578899999
Q ss_pred HHHHHcCChhHHHHHHHHHhccCCC------------CchhHHHHHHHhhhCCCchhHHHHHHH
Q 004369 565 AGCRRHGNMELGFYAAEQLLKLKPK------------DCESYAMLLDIFVSAGRWEDVAVVKNL 616 (758)
Q Consensus 565 ~~~~~~g~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 616 (758)
..+...|++++|...+++++++.|+ +...+..|+.++...|+.+.+.++.+.
T Consensus 289 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 289 ISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999999999999999998876 367899999999999999998877654
No 25
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.69 E-value=3.2e-15 Score=151.30 Aligned_cols=239 Identities=8% Similarity=-0.039 Sum_probs=198.7
Q ss_pred CCChhHHHHHHHHhHhCCCCCCH--HHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHH
Q 004369 366 HNGGTEALSIFSKLNSSGMKPDL--YTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERAS 443 (758)
Q Consensus 366 ~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~ 443 (758)
.|++.+|+..+++.... .|+. .....+.+++...|+++.+...++. .-+|+...+..+...|...|+.++|.
T Consensus 12 ~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A~ 85 (291)
T 3mkr_A 12 IGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAIV 85 (291)
T ss_dssp TTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHHH
T ss_pred HHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHHH
Confidence 89999999999876543 4543 3556678899999999998875533 24678888999999999999999999
Q ss_pred HHHHhcC----CC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhh
Q 004369 444 RVFVEMS----TR-TLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKE 518 (758)
Q Consensus 444 ~~~~~~~----~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 518 (758)
+.++++. .| +...+..+...|.+.|++++|++.+++ ..+...+..+...+.+.|++++|.+.|+.+.+.
T Consensus 86 ~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 159 (291)
T 3mkr_A 86 AELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ 159 (291)
T ss_dssp HHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 9999864 13 566788888999999999999999987 456778888899999999999999999999874
Q ss_pred cCCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchh
Q 004369 519 YKIKPVMDH---YMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCES 593 (758)
Q Consensus 519 ~~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 593 (758)
.|+... ..+++..+...|++++|..+|+++ ...| +...|+.+..++.+.|++++|+..++++++++|+++.+
T Consensus 160 ---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 236 (291)
T 3mkr_A 160 ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236 (291)
T ss_dssp ---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred ---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 355321 233445555669999999999999 3344 78889999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCchh-HHHHHHHhhh
Q 004369 594 YAMLLDIFVSAGRWED-VAVVKNLTRE 619 (758)
Q Consensus 594 ~~~l~~~~~~~g~~~~-a~~~~~~m~~ 619 (758)
+..++.++...|++++ +.++++.+.+
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 9999999999999987 5688888876
No 26
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.69 E-value=7.5e-15 Score=148.54 Aligned_cols=268 Identities=8% Similarity=-0.026 Sum_probs=212.8
Q ss_pred HHHhcCCHHHHHHHHccCCCCCe----eechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCHHHHHHHH
Q 004369 320 LYLKCGLVDEAQKLFDGMSHVNL----VTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSIL 395 (758)
Q Consensus 320 ~~~~~g~~~~A~~~~~~m~~~~~----~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 395 (758)
-....|+++.|+..++.....++ ...-.+..+|.. .|++++|+..++. .-.|+..++..+.
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~-----------~g~~~~al~~~~~----~~~~~~~a~~~la 72 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLA-----------QRKYGVVLDEIKP----SSAPELQAVRMFA 72 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHH-----------TTCHHHHHHHSCT----TSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHH-----------CCCHHHHHHHhcc----cCChhHHHHHHHH
Confidence 34456888888888877655332 233456677887 8888888876644 1356677888888
Q ss_pred HHHhcccchHHHHHHHHHHHHcCC-CChHHHHhHHhhhHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHH
Q 004369 396 TICSRLVALEQGEQIHALTLKTGF-LSDVVVGTALVNMYKKCGRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQAL 474 (758)
Q Consensus 396 ~a~~~~~~~~~a~~i~~~~~~~~~-~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 474 (758)
..+...++.+.+.+.++.+...+. +.+..++..+...|.+.|++++|.+.|++ ..+...+..++..|.+.|++++|+
T Consensus 73 ~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~ 150 (291)
T 3mkr_A 73 EYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLAR 150 (291)
T ss_dssp HHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 888888899999999998887764 44667778888999999999999999999 567889999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHH---HHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 004369 475 QLFEDMLLAGVRPNQVTF---VGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM 551 (758)
Q Consensus 475 ~~~~~m~~~g~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 551 (758)
+.|+++.+. .|+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|.+.++++
T Consensus 151 ~~l~~~~~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~a 226 (291)
T 3mkr_A 151 KELKKMQDQ--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEA 226 (291)
T ss_dssp HHHHHHHHH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhh--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999985 4664321 12233344569999999999999884 4567889999999999999999999999997
Q ss_pred -CCCC-CHHHHHHHHHHHHHcCChhH-HHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHH
Q 004369 552 -DFEP-NEVIWSVFIAGCRRHGNMEL-GFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAV 612 (758)
Q Consensus 552 -~~~p-~~~~~~~ll~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 612 (758)
...| +..+|..++..+...|+.++ +.++++++++++|+++.+. +...+.+.++++..
T Consensus 227 l~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 227 LDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVL 286 (291)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHH
Confidence 5566 67889999999999999876 6789999999999997643 45566666666544
No 27
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.69 E-value=9.1e-16 Score=161.57 Aligned_cols=252 Identities=14% Similarity=0.037 Sum_probs=205.1
Q ss_pred CCChhHHHH-HHHHhHhCCC-CC--CHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHH
Q 004369 366 HNGGTEALS-IFSKLNSSGM-KP--DLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIER 441 (758)
Q Consensus 366 ~g~~~~A~~-l~~~m~~~g~-~p--~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~ 441 (758)
.|++++|++ .|.+...... .| +...+..+...+...|++++|...+..+.+.. +.+..++..+...|.+.|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 788888988 8886654321 11 34567788889999999999999999999874 5577889999999999999999
Q ss_pred HHHHHHhcC---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHH---------------HHHHHhcc
Q 004369 442 ASRVFVEMS---TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQV-TFVG---------------ALAACSNA 502 (758)
Q Consensus 442 A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~---------------ll~a~~~~ 502 (758)
|...|+++. +.+..+|..+...|...|++++|+..|+++.... |+.. .+.. .+..+...
T Consensus 117 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 117 AISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 999999865 4577899999999999999999999999999853 4322 1111 23344489
Q ss_pred ccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHH
Q 004369 503 GMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAA 580 (758)
Q Consensus 503 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~ 580 (758)
|++++|..+|+.+.+.....++...+..+...|.+.|++++|.+.++++ ...| +..+|..+...+...|++++|...+
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 274 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAY 274 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999875333335889999999999999999999999998 4455 5788999999999999999999999
Q ss_pred HHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhhC
Q 004369 581 EQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREE 620 (758)
Q Consensus 581 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 620 (758)
++++++.|+++..+..++.+|.+.|++++|...++.+.+.
T Consensus 275 ~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 275 RRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999998763
No 28
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.68 E-value=2e-14 Score=159.37 Aligned_cols=430 Identities=10% Similarity=0.080 Sum_probs=271.7
Q ss_pred HHHHHHhCCCCchhHHHHHHHHhhcCCChHHHHHHHccCCC--C-CcchHHHHHHHHHhCCCchHHHHHHHHHHHcCCCC
Q 004369 97 HAHIVKTGSHQDFFVMTFLVNVYGKCGNMEEAQKVFDNLPR--I-NVVSWTSLISGYVQNSQPELAIHVFLDMLEAGNYP 173 (758)
Q Consensus 97 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 173 (758)
++..++.. +.+...|..++. +.+.|++++|+.+|+++.+ | +...|...+..+.+.|++++|..+|++.... .|
T Consensus 2 le~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p 77 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VL 77 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CC
T ss_pred hhhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CC
Confidence 34444443 557788888888 4778999999999988764 3 4556888899999999999999999998875 46
Q ss_pred ChhhHHHHHHHh-cccCChHHHHH----HHHHHHHh-CCCC-ChhHHHHHHHHHhhcCChHHHHHHHhccCCCCcchHHH
Q 004369 174 TNVTLGTALTAC-SSLESIRLGKQ----IHAYVVKY-QTED-DTSVGNSLCSLYSTCGSLNSAIKAFNRIREKNVMSWTT 246 (758)
Q Consensus 174 ~~~t~~~ll~~~-~~~~~~~~a~~----~~~~~~~~-g~~~-~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~ 246 (758)
+...|...+... ...|+.+.|++ +++.+++. |..| +..+|...+....+... ...
T Consensus 78 ~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~---------------~~~--- 139 (530)
T 2ooe_A 78 HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEA---------------VGS--- 139 (530)
T ss_dssp CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCC---------------CSS---
T ss_pred ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCC---------------ccc---
Confidence 766666655422 33455555544 66666543 4443 34556665555433100 000
Q ss_pred HHHHHhhCCChhhHHHHHHHHHHCCCCCCh---hhHHHHHHHHcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 004369 247 VIGACGENGEAVQGLRFFSKMLSEGIQPNE---FTLTSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLK 323 (758)
Q Consensus 247 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~---~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 323 (758)
+.+.|++++|..+|++.+.. |+. ..|..........+ ...+..+ +. .+
T Consensus 140 ----~~~~~~~~~a~~~y~~al~~---P~~~~~~~~~~~~~~e~~~~-~~~~~~~-------------------l~--~~ 190 (530)
T 2ooe_A 140 ----YAENQRITAVRRVYQRGCVN---PMINIEQLWRDYNKYEEGIN-IHLAKKM-------------------IE--DR 190 (530)
T ss_dssp ----TTHHHHHHHHHHHHHHHTTS---CCTTHHHHHHHHHHHHHHHC-HHHHHHH-------------------HH--TT
T ss_pred ----HHHHhHHHHHHHHHHHHHhc---hhhhHHHHHHHHHHHHHhhc-hhHHHHH-------------------HH--Hh
Confidence 01234444455555544441 211 11110000000000 0000000 00 01
Q ss_pred cCCHHHHHHHHcc-------CC------CCC--------eeechhHHHHHhhhchhhhchhhcCCCh----hHHHHHHHH
Q 004369 324 CGLVDEAQKLFDG-------MS------HVN--------LVTWNAMIAGHAQMMDLAKDDLSAHNGG----TEALSIFSK 378 (758)
Q Consensus 324 ~g~~~~A~~~~~~-------m~------~~~--------~~~~~~li~~~~~~~~~~~~~l~~~g~~----~~A~~l~~~ 378 (758)
.++++.|..++.. +. .|+ ...|...+.-... .....++. .+++.+|++
T Consensus 191 ~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~-------~~~~~~~~~~~~~~a~~~y~~ 263 (530)
T 2ooe_A 191 SRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKS-------NPLRTEDQTLITKRVMFAYEQ 263 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHH-------CSSCCSCSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHc-------CCccCCcchhHHHHHHHHHHH
Confidence 1223333332221 11 111 1233333321111 00002232 477888988
Q ss_pred hHhCCCCCCHHHHHHHHHHHhc-------ccchH-------HHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHH
Q 004369 379 LNSSGMKPDLYTFSSILTICSR-------LVALE-------QGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASR 444 (758)
Q Consensus 379 m~~~g~~p~~~t~~~ll~a~~~-------~~~~~-------~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~ 444 (758)
..... +-+...|......+.+ .|+++ .|..+++..++.-.+.+..++..++..+.+.|++++|..
T Consensus 264 al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~ 342 (530)
T 2ooe_A 264 CLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHS 342 (530)
T ss_dssp HHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHH
Confidence 87742 2355666666666654 68887 899999999874345578899999999999999999999
Q ss_pred HHHhcC--CC-Ch-hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH-HhccccHHHHHHHHHHhhhh
Q 004369 445 VFVEMS--TR-TL-ISWTSMITGFANHSLSHQALQLFEDMLLAGVRPN-QVTFVGALAA-CSNAGMVYEALGYFEMMQKE 518 (758)
Q Consensus 445 ~~~~~~--~~-~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a-~~~~g~~~~a~~~~~~~~~~ 518 (758)
+|+++. .| +. ..|..++..+.+.|+.++|.++|++..+. .|+ ...|...... +...|++++|..+|+...+.
T Consensus 343 ~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~ 420 (530)
T 2ooe_A 343 IYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK 420 (530)
T ss_dssp HHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Confidence 999876 23 33 58999999999999999999999999875 333 3333332222 33589999999999999874
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHhccCCC
Q 004369 519 YKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM----DFEPN--EVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPK 589 (758)
Q Consensus 519 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 589 (758)
. +.+...|..+++.+.+.|+.++|..+|++. +..|+ ...|...+.....+|+.+.+..+.+++.+..|+
T Consensus 421 ~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 421 Y--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp H--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred C--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 3 234788999999999999999999999998 23332 447999999999999999999999999998885
No 29
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.68 E-value=2.3e-15 Score=158.45 Aligned_cols=231 Identities=11% Similarity=-0.016 Sum_probs=196.4
Q ss_pred CHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHH
Q 004369 387 DLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMS---TRTLISWTSMITG 463 (758)
Q Consensus 387 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~ 463 (758)
+...+......+.+.|++++|..++..+++.. +.+..++..+...|.+.|++++|...|+++. +.+..+|..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 44557788889999999999999999999875 5578899999999999999999999999876 4567899999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCH-----------HHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHH
Q 004369 464 FANHSLSHQALQLFEDMLLAGVRPNQ-----------VTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLI 532 (758)
Q Consensus 464 ~~~~g~~~~A~~~~~~m~~~g~~p~~-----------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 532 (758)
|...|++++|+..|+++.+. .|+. ..+..+...+...|++++|..+|+++.+...-.++...+..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 99999999999999999884 3432 2233457788999999999999999987533333688999999
Q ss_pred HHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhH
Q 004369 533 DMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDV 610 (758)
Q Consensus 533 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 610 (758)
..|.+.|++++|++.++++ ...| +..+|..+...+...|++++|...+++++++.|+++..+..++.+|...|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999998 4455 6889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhC
Q 004369 611 AVVKNLTREE 620 (758)
Q Consensus 611 ~~~~~~m~~~ 620 (758)
...++.+.+.
T Consensus 301 ~~~~~~al~~ 310 (365)
T 4eqf_A 301 VSNFLTALSL 310 (365)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.67 E-value=2.3e-15 Score=155.39 Aligned_cols=261 Identities=9% Similarity=-0.086 Sum_probs=217.7
Q ss_pred eeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCC
Q 004369 342 LVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLS 421 (758)
Q Consensus 342 ~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~ 421 (758)
...|..+...+.. .|++++|+.+|+++.+.. +.+...+..+..++...|+++.|...+..+.+.. +.
T Consensus 21 ~~~~~~~a~~~~~-----------~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~ 87 (327)
T 3cv0_A 21 HENPMEEGLSMLK-----------LANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PK 87 (327)
T ss_dssp SSCHHHHHHHHHH-----------TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred hHHHHHHHHHHHH-----------hccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cC
Confidence 3455666677777 999999999999998753 3367788888889999999999999999998874 45
Q ss_pred hHHHHhHHhhhHHhcCCHHHHHHHHHhcCCC---ChhHHHHH--------------HH-HHHhcCCHHHHHHHHHHHHHc
Q 004369 422 DVVVGTALVNMYKKCGRIERASRVFVEMSTR---TLISWTSM--------------IT-GFANHSLSHQALQLFEDMLLA 483 (758)
Q Consensus 422 ~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~ 483 (758)
+..++..+...|.+.|++++|.+.|+++... +...+..+ .. .+...|++++|+..++++.+.
T Consensus 88 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 167 (327)
T 3cv0_A 88 DIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM 167 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhh
Confidence 6788999999999999999999999987632 33334333 22 367789999999999999986
Q ss_pred CCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHH
Q 004369 484 GVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWS 561 (758)
Q Consensus 484 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~ 561 (758)
. +.+...+..+...+...|++++|..+++.+.+. .+.+...+..+...|.+.|++++|.+.++++ ...| +..+|.
T Consensus 168 ~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 244 (327)
T 3cv0_A 168 N-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMY 244 (327)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 3 335778888999999999999999999999873 2345788999999999999999999999998 4445 678899
Q ss_pred HHHHHHHHcCChhHHHHHHHHHhccCCC------------CchhHHHHHHHhhhCCCchhHHHHHHHhh
Q 004369 562 VFIAGCRRHGNMELGFYAAEQLLKLKPK------------DCESYAMLLDIFVSAGRWEDVAVVKNLTR 618 (758)
Q Consensus 562 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 618 (758)
.+...+...|++++|...++++++..|+ ++..+..++.+|...|++++|..+++...
T Consensus 245 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 245 NMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 9999999999999999999999999998 78899999999999999999998876543
No 31
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.67 E-value=3.3e-13 Score=148.01 Aligned_cols=354 Identities=10% Similarity=0.012 Sum_probs=267.3
Q ss_pred CcchHHHHHHHHhh----CCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcc----cCChHHHHHHHHHHHHhCCCCch
Q 004369 240 NVMSWTTVIGACGE----NGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGT----MLSLRVGAQVHSLGIKLGYASNL 311 (758)
Q Consensus 240 ~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~ 311 (758)
|...+..+...|.. .+++++|+..|++..+.| +...+..+-..+.. .++.+.|.+.+....+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 33344444444444 555666666666655543 33344444444444 566666666666666654 45
Q ss_pred hHHHHHHHHHHh----cCCHHHHHHHHccCCCC-CeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCC
Q 004369 312 RVRNSIMYLYLK----CGLVDEAQKLFDGMSHV-NLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKP 386 (758)
Q Consensus 312 ~~~~~li~~~~~----~g~~~~A~~~~~~m~~~-~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p 386 (758)
..+..|..+|.. .+++++|...|++..+. +...+..+...|...... .++.++|++.|++..+.|
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~-------~~d~~~A~~~~~~a~~~~--- 181 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGV-------TRDYVMAREWYSKAAEQG--- 181 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSS-------CCCHHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCC-------CCCHHHHHHHHHHHHHCC---
Confidence 556677778877 78999999999887553 444555555555431111 678999999999998875
Q ss_pred CHHHHHHHHHHHhc----ccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHh----cCCHHHHHHHHHhcCC-CChhHH
Q 004369 387 DLYTFSSILTICSR----LVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKK----CGRIERASRVFVEMST-RTLISW 457 (758)
Q Consensus 387 ~~~t~~~ll~a~~~----~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~----~g~~~~A~~~~~~~~~-~~~~~~ 457 (758)
+...+..+...+.. .++.++|...+....+.+ +...+..|..+|.. .+++++|...|++..+ .+...+
T Consensus 182 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~ 258 (490)
T 2xm6_A 182 NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQ 258 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHH
T ss_pred CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 56677777777776 789999999999998876 56677788888886 8999999999998664 466778
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc-----ccHHHHHHHHHHhhhhcCCCCCHHHH
Q 004369 458 TSMITGFAN----HSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNA-----GMVYEALGYFEMMQKEYKIKPVMDHY 528 (758)
Q Consensus 458 ~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~~~~~~~~~p~~~~~ 528 (758)
..+...|.. .++.++|+..|++..+.| +...+..+...+... +++++|..+|+...+. + +...+
T Consensus 259 ~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~ 331 (490)
T 2xm6_A 259 FRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---DATAQ 331 (490)
T ss_dssp HHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---CHHHH
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---CHHHH
Confidence 888888888 899999999999998764 445666666667666 8999999999999873 3 45677
Q ss_pred HHHHHHHHHcC---CHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHhccCCCCchhHHHHHHHh
Q 004369 529 MCLIDMFVRLG---CIEEAFDFIKKMDFEPNEVIWSVFIAGCRR----HGNMELGFYAAEQLLKLKPKDCESYAMLLDIF 601 (758)
Q Consensus 529 ~~li~~~~~~g---~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 601 (758)
..|..+|.+.| +.++|++.|++.-...+...+..|...+.. .++.++|...++++.+.+ ++..+..|+.+|
T Consensus 332 ~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y 409 (490)
T 2xm6_A 332 ANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIY 409 (490)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHH
Confidence 88888888877 889999999988222478889999999998 899999999999998865 578999999999
Q ss_pred hh----CCCchhHHHHHHHhhhCC
Q 004369 602 VS----AGRWEDVAVVKNLTREEK 621 (758)
Q Consensus 602 ~~----~g~~~~a~~~~~~m~~~~ 621 (758)
.. .+++++|...++...+.+
T Consensus 410 ~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 410 YYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HcCCCCCCCHHHHHHHHHHHHHCC
Confidence 98 899999999999998865
No 32
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.66 E-value=1.1e-16 Score=177.73 Aligned_cols=128 Identities=14% Similarity=0.122 Sum_probs=114.0
Q ss_pred CCChHHHHhHHhhhHHhcCCHHHHHHHHHhcC-------CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 004369 419 FLSDVVVGTALVNMYKKCGRIERASRVFVEMS-------TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVT 491 (758)
Q Consensus 419 ~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 491 (758)
...-..+||+||++|+++|++++|.++|++|. .||+++||+||.||++.|+.++|.++|++|.+.|+.||.+|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 44567799999999999999999999997753 68999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccc-HHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004369 492 FVGALAACSNAGM-VYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDF 547 (758)
Q Consensus 492 ~~~ll~a~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 547 (758)
|+++|.++++.|+ .++|.++|++|.++ |+.||..+|++++....|.+-++...++
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHh
Confidence 9999999999997 57899999999985 9999999999999888777555444444
No 33
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.66 E-value=3e-14 Score=155.62 Aligned_cols=370 Identities=12% Similarity=0.056 Sum_probs=211.0
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHhccCC-----------C-CcchHHHHHHHHhhCCChhhHHHHHHHHHHCC---CCC
Q 004369 210 TSVGNSLCSLYSTCGSLNSAIKAFNRIRE-----------K-NVMSWTTVIGACGENGEAVQGLRFFSKMLSEG---IQP 274 (758)
Q Consensus 210 ~~~~~~Li~~y~~~g~~~~A~~~f~~~~~-----------~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~p 274 (758)
...||.|...|...|+.++|.+.|++..+ + ..++|+.+...|...|++++|...|++..... ..|
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 45667777777777777777776654321 1 23456666666666666666666666554310 000
Q ss_pred ChhhHHHHHHHHcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc--CCHHHHHHHHccCCC--C-CeeechhHH
Q 004369 275 NEFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKC--GLVDEAQKLFDGMSH--V-NLVTWNAMI 349 (758)
Q Consensus 275 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~--~-~~~~~~~li 349 (758)
. -.....++..+..++.+. +++++|...|++..+ | +...+..+.
T Consensus 131 ~-------------------------------~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~ 179 (472)
T 4g1t_A 131 Y-------------------------------RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLA 179 (472)
T ss_dssp S-------------------------------CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred c-------------------------------chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 0 001122333333333333 346666666665532 2 222333333
Q ss_pred HHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHh----cccchHHHHHHHHHHHHcCCCChHHH
Q 004369 350 AGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILTICS----RLVALEQGEQIHALTLKTGFLSDVVV 425 (758)
Q Consensus 350 ~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~----~~~~~~~a~~i~~~~~~~~~~~~~~~ 425 (758)
..+.+ +...++.++|++.|++..+.. +.+...+..+...+. ..++.++|.+.+....+.. +.+..+
T Consensus 180 ~~~~~--------l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~ 249 (472)
T 4g1t_A 180 IASYR--------LDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDV 249 (472)
T ss_dssp HHHHH--------HHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHH
T ss_pred HHHHH--------hcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHH
Confidence 33222 111567777888777776542 223444444433333 3456777888887777654 445667
Q ss_pred HhHHhhhHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHh-------------------cCCHHHHHHHHHHHHHc
Q 004369 426 GTALVNMYKKCGRIERASRVFVEMS---TRTLISWTSMITGFAN-------------------HSLSHQALQLFEDMLLA 483 (758)
Q Consensus 426 ~~~Li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~-------------------~g~~~~A~~~~~~m~~~ 483 (758)
+..+...|.+.|++++|...|++.. +.+..+|..+...|.. .+..++|+..|++..+.
T Consensus 250 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 329 (472)
T 4g1t_A 250 LRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA 329 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc
Confidence 7788888888888888888888765 3345566666555432 23367788888888774
Q ss_pred CCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCH--HHHHHHHH-HHHHcCCHHHHHHHHHHc-CCCCCHHH
Q 004369 484 GVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVM--DHYMCLID-MFVRLGCIEEAFDFIKKM-DFEPNEVI 559 (758)
Q Consensus 484 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~li~-~~~~~g~~~~A~~~~~~m-~~~p~~~~ 559 (758)
. +.+..++..+...+...|++++|...|+++.+. ...|.. ..+..+.. .+...|+.++|++.+++. .+.|+...
T Consensus 330 ~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~ 407 (472)
T 4g1t_A 330 N-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK-ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSRE 407 (472)
T ss_dssp C-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHH
T ss_pred C-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHH
Confidence 2 223556777888899999999999999998762 222221 12333333 234678999999999887 67776544
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhhCCCCCCCceeEE
Q 004369 560 WSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREEKLSETDDWSWI 631 (758)
Q Consensus 560 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~ 631 (758)
+... .+.+..++++.++.+|+++.+|..|+.+|...|++++|.+.+++..+.+-......+|+
T Consensus 408 ~~~~---------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 408 KEKM---------KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHH---------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred HHHH---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 3332 34456778888999999999999999999999999999999999988665433334443
No 34
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.65 E-value=2.2e-16 Score=175.49 Aligned_cols=148 Identities=8% Similarity=-0.034 Sum_probs=126.2
Q ss_pred CCChhHHHHHHHHHhhcCChHHHHHHHhccC-------CCCcchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhH
Q 004369 207 EDDTSVGNSLCSLYSTCGSLNSAIKAFNRIR-------EKNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTL 279 (758)
Q Consensus 207 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 279 (758)
..-..+||+||++|+++|++++|.++|++|. .||+++||+||.+|++.|+.++|.++|++|.+.|+.||.+||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 3345689999999999999999999997764 489999999999999999999999999999999999999999
Q ss_pred HHHHHHHcccCCh-HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCC-----CeeechhHHHHHh
Q 004369 280 TSISSVCGTMLSL-RVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSHV-----NLVTWNAMIAGHA 353 (758)
Q Consensus 280 ~~ll~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~~~~~li~~~~ 353 (758)
+++|.++++.|.. +.|.+++++|.+.|+.||..+|+.++..+.+.+-++...+++..+..+ .+.+.+.|...|.
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s 283 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYA 283 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHc
Confidence 9999999999985 789999999999999999999999999888877777776666555431 2334445555665
Q ss_pred h
Q 004369 354 Q 354 (758)
Q Consensus 354 ~ 354 (758)
+
T Consensus 284 ~ 284 (1134)
T 3spa_A 284 K 284 (1134)
T ss_dssp C
T ss_pred c
Confidence 5
No 35
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.63 E-value=2.5e-14 Score=156.17 Aligned_cols=381 Identities=10% Similarity=-0.047 Sum_probs=223.6
Q ss_pred ChhhHHHHHHHhcccCChHHHHHHHHHHHHh-----C--CCC-ChhHHHHHHHHHhhcCChHHHHHHHhccCC-------
Q 004369 174 TNVTLGTALTACSSLESIRLGKQIHAYVVKY-----Q--TED-DTSVGNSLCSLYSTCGSLNSAIKAFNRIRE------- 238 (758)
Q Consensus 174 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g--~~~-~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~------- 238 (758)
....|+.+-..+...|+.++|.+.+..+++. + ..| ...+|+.+...|...|++++|...|++..+
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3556888888899999999999999988763 1 123 345788999999999999999999886642
Q ss_pred ---C-CcchHHHHHHHHhh--CCChhhHHHHHHHHHHCCCCCChh-hHHHHHHH---HcccCChHHHHHHHHHHHHhCCC
Q 004369 239 ---K-NVMSWTTVIGACGE--NGEAVQGLRFFSKMLSEGIQPNEF-TLTSISSV---CGTMLSLRVGAQVHSLGIKLGYA 308 (758)
Q Consensus 239 ---~-~~~~~~~li~~~~~--~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~---~~~~~~~~~a~~~~~~~~~~g~~ 308 (758)
+ ...+++.+..++.. .+++++|++.|++..+. .|+.. .+..+..+ +...++.+.|.+.+...++.. +
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p 206 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P 206 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence 1 12345555545544 45789999999998874 45543 33333222 345567777888888887765 3
Q ss_pred CchhHHHHHHHHHHh----cCCHHHHHHHHccCCC--C-CeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHh
Q 004369 309 SNLRVRNSIMYLYLK----CGLVDEAQKLFDGMSH--V-NLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNS 381 (758)
Q Consensus 309 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~ 381 (758)
.+..++..+...+.. .|+.++|.+.+++... | +...|..+...|.. .|++++|+..|++..+
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~-----------~~~~~~A~~~~~~al~ 275 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRR-----------KDEPDKAIELLKKALE 275 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHH-----------TTCHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH-----------cCchHHHHHHHHHHHH
Confidence 445555555544444 3456677777776654 2 23445666666666 7777777777777765
Q ss_pred CCCCCC-HHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcC---CCChhHH
Q 004369 382 SGMKPD-LYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMS---TRTLISW 457 (758)
Q Consensus 382 ~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~---~~~~~~~ 457 (758)
. .|+ ..++..+...+...+.... .. ............+..+.|...|++.. ..+..+|
T Consensus 276 ~--~p~~~~~~~~lg~~y~~~~~~~~---------~~-------~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 337 (472)
T 4g1t_A 276 Y--IPNNAYLHCQIGCCYRAKVFQVM---------NL-------RENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVC 337 (472)
T ss_dssp H--STTCHHHHHHHHHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCH
T ss_pred h--CCChHHHHHHHHHHHHHHHHHhh---------hH-------HHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhh
Confidence 4 333 3333333332221110000 00 00011111122234667777777654 4456789
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHH-HHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHH
Q 004369 458 TSMITGFANHSLSHQALQLFEDMLLAGVRPNQV--TFVGALA-ACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDM 534 (758)
Q Consensus 458 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 534 (758)
..+...|...|++++|++.|++..+....|... .+..+.. ...+.|+.++|+..|++..+ +.|+.......
T Consensus 338 ~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~--- 411 (472)
T 4g1t_A 338 SILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKM--- 411 (472)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHH---
T ss_pred hhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHH---
Confidence 999999999999999999999999864443321 2222222 34578999999999998865 45654332222
Q ss_pred HHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHH
Q 004369 535 FVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLL 598 (758)
Q Consensus 535 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 598 (758)
.+.+.+++++. ...| +..+|..|...+...|++++|++.++++++++|.+|.+...++
T Consensus 412 ------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 412 ------KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp ------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred ------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 23344445444 3345 6788999999999999999999999999999998887766554
No 36
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.59 E-value=6.2e-14 Score=135.27 Aligned_cols=193 Identities=16% Similarity=0.103 Sum_probs=157.1
Q ss_pred CChHHHHhHHhhhHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 004369 420 LSDVVVGTALVNMYKKCGRIERASRVFVEMS---TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPN-QVTFVGA 495 (758)
Q Consensus 420 ~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l 495 (758)
+++...+..+...|.+.|++++|...|++.. +.+...|..+...+.+.|++++|+..|++..+. .|+ ...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 4566778888889999999999999999865 346678999999999999999999999999984 565 6678888
Q ss_pred HHHHhcc-----------ccHHHHHHHHHHhhhhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCCHHHHHH
Q 004369 496 LAACSNA-----------GMVYEALGYFEMMQKEYKIKP-VMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEPNEVIWSV 562 (758)
Q Consensus 496 l~a~~~~-----------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ 562 (758)
..++... |++++|...++...+. .| +...+..+..+|...|++++|++.|++. ....+...|..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHH
Confidence 8889999 9999999999999863 34 4778899999999999999999999998 22268889999
Q ss_pred HHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHh
Q 004369 563 FIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLT 617 (758)
Q Consensus 563 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 617 (758)
+...+...|++++|...++++++++|+++..+..++.+|...|++++|...++..
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999887764
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.59 E-value=1.2e-13 Score=136.90 Aligned_cols=218 Identities=7% Similarity=-0.013 Sum_probs=189.5
Q ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCCC---C-------hhHHH
Q 004369 389 YTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMSTR---T-------LISWT 458 (758)
Q Consensus 389 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~---~-------~~~~~ 458 (758)
..+..+...+...|++++|...+..+.+.. .+..++..+...|...|++++|...|++.... + ...|.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 456667778888999999999999988877 67888999999999999999999999887631 1 57889
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHc
Q 004369 459 SMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRL 538 (758)
Q Consensus 459 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 538 (758)
.+...|...|++++|+..|+++.+. .|+. ..+...|++++|...++.+.+ ..+.+...+..+...+...
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHh
Confidence 9999999999999999999999984 5553 346677899999999999876 2233467888999999999
Q ss_pred CCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHH
Q 004369 539 GCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNL 616 (758)
Q Consensus 539 g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 616 (758)
|++++|.+.++++ ...| +..+|..+...+...|++++|...++++++..|+++..+..++.+|...|++++|...++.
T Consensus 153 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999999998 4445 6788999999999999999999999999999999999999999999999999999999998
Q ss_pred hhh
Q 004369 617 TRE 619 (758)
Q Consensus 617 m~~ 619 (758)
..+
T Consensus 233 a~~ 235 (258)
T 3uq3_A 233 ART 235 (258)
T ss_dssp HHH
T ss_pred HHH
Confidence 876
No 38
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.57 E-value=1.2e-13 Score=142.30 Aligned_cols=229 Identities=9% Similarity=-0.017 Sum_probs=194.2
Q ss_pred CHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHH
Q 004369 387 DLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMS---TRTLISWTSMITG 463 (758)
Q Consensus 387 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~ 463 (758)
+...+......+...|++++|..++..+.+.. +.+...+..+...|.+.|++++|...|+++. +.+...|..+...
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 98 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS 98 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHH
Confidence 33455666778888999999999999998864 4577888899999999999999999999875 4467889999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHH--------------HH-HHhccccHHHHHHHHHHhhhhcCCCCCHHH
Q 004369 464 FANHSLSHQALQLFEDMLLAGVRPNQV-TFVGA--------------LA-ACSNAGMVYEALGYFEMMQKEYKIKPVMDH 527 (758)
Q Consensus 464 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~l--------------l~-a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 527 (758)
|...|++++|+..++++.+. .|+.. .+..+ .. .+...|++++|..+++.+.+. .+.+...
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~ 174 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLS--QPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM--NPNDAQL 174 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHT--STTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHH--STTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhh--CCCCHHH
Confidence 99999999999999999985 34422 22222 22 378899999999999999873 2346788
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCC
Q 004369 528 YMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAG 605 (758)
Q Consensus 528 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 605 (758)
+..+...|.+.|++++|.+.++++ ...| +..+|..+...+...|++++|...++++++..|+++..+..++.+|...|
T Consensus 175 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 175 HASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999998 4445 57889999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHhhhC
Q 004369 606 RWEDVAVVKNLTREE 620 (758)
Q Consensus 606 ~~~~a~~~~~~m~~~ 620 (758)
++++|.+.++.+.+.
T Consensus 255 ~~~~A~~~~~~a~~~ 269 (327)
T 3cv0_A 255 QYDLAAKQLVRAIYM 269 (327)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHh
Confidence 999999999998764
No 39
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.54 E-value=2.9e-13 Score=135.72 Aligned_cols=240 Identities=7% Similarity=-0.121 Sum_probs=195.9
Q ss_pred CCChhHHHHHHHHhHhCCCC--C-CHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHH
Q 004369 366 HNGGTEALSIFSKLNSSGMK--P-DLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERA 442 (758)
Q Consensus 366 ~g~~~~A~~l~~~m~~~g~~--p-~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A 442 (758)
.|++++|+..|+++.+.... | +..++..+...+...|++++|...+..+.+.. +.+..++..+...|...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 78999999999999886321 2 45678888889999999999999999999875 45688999999999999999999
Q ss_pred HHHHHhcC---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhc
Q 004369 443 SRVFVEMS---TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEY 519 (758)
Q Consensus 443 ~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 519 (758)
...|++.. +.+...|..+...|...|++++|+..|+++.+. .|+.......+..+...|++++|...++.....
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~- 173 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK- 173 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 99999876 346789999999999999999999999999984 566555555566667889999999999888764
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCC-----HHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchh
Q 004369 520 KIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEPN-----EVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCES 593 (758)
Q Consensus 520 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 593 (758)
.+++...+ .++..+...++.++|.+.+++. ...|+ ..+|..+...+...|++++|...++++++.+|++...
T Consensus 174 -~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 251 (275)
T 1xnf_A 174 -SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE 251 (275)
T ss_dssp -SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH
T ss_pred -CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH
Confidence 23444444 4777788888999999999987 44342 5778999999999999999999999999999987554
Q ss_pred HHHHHHHhhhCCCchhHHHHH
Q 004369 594 YAMLLDIFVSAGRWEDVAVVK 614 (758)
Q Consensus 594 ~~~l~~~~~~~g~~~~a~~~~ 614 (758)
+ +.++...|++++|.+.+
T Consensus 252 ~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 252 H---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp H---HHHHHHHHHHHHC----
T ss_pred H---HHHHHHHHHHHhhHHHH
Confidence 4 66788888988887654
No 40
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.52 E-value=2.6e-13 Score=134.59 Aligned_cols=235 Identities=11% Similarity=-0.019 Sum_probs=195.7
Q ss_pred echhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCC--CC
Q 004369 344 TWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGF--LS 421 (758)
Q Consensus 344 ~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~--~~ 421 (758)
.|..+...+.. .|++++|+..|++..+.. .+...+..+..++...|++++|...+..+.+... .+
T Consensus 7 ~~~~~g~~~~~-----------~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 73 (258)
T 3uq3_A 7 KEKAEGNKFYK-----------ARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRA 73 (258)
T ss_dssp HHHHHHHHHHH-----------TTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHH-----------hccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccccc
Confidence 35556667777 999999999999998876 7788899999999999999999999998877431 11
Q ss_pred h----HHHHhHHhhhHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHH
Q 004369 422 D----VVVGTALVNMYKKCGRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPN-QVTFVGAL 496 (758)
Q Consensus 422 ~----~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll 496 (758)
+ ..++..+...|.+.|++++|...|++....+.. ...+...|++++|+..++++... .|+ ...+..+.
T Consensus 74 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~ 146 (258)
T 3uq3_A 74 DYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEG 146 (258)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHH
Confidence 1 578899999999999999999999987632111 24566778899999999999884 454 56778888
Q ss_pred HHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChh
Q 004369 497 AACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNME 574 (758)
Q Consensus 497 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~ 574 (758)
..+...|++++|...++.+.+. .+.+...+..+...|.+.|++++|.+.++++ ...| +..+|..+...+...|+++
T Consensus 147 ~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~ 224 (258)
T 3uq3_A 147 KEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYA 224 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHH
Confidence 8999999999999999999873 2345788999999999999999999999998 4455 5788999999999999999
Q ss_pred HHHHHHHHHhccC------CCCchhHHHHHHH
Q 004369 575 LGFYAAEQLLKLK------PKDCESYAMLLDI 600 (758)
Q Consensus 575 ~a~~~~~~~~~~~------p~~~~~~~~l~~~ 600 (758)
+|...+++++++. |++...+..|..+
T Consensus 225 ~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 225 SALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 9999999999998 8877776666543
No 41
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.48 E-value=3.4e-12 Score=123.46 Aligned_cols=197 Identities=10% Similarity=0.025 Sum_probs=155.6
Q ss_pred ChHHHHhHHhhhHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004369 421 SDVVVGTALVNMYKKCGRIERASRVFVEMS---TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALA 497 (758)
Q Consensus 421 ~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 497 (758)
.+..++..+...|...|++++|.+.|+++. ..+...|..+...|...|++++|++.|+++.+.. +.+..++..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 356667777888888888888888887754 3456778888888888888888888888887752 234667777888
Q ss_pred HHhcc-ccHHHHHHHHHHhhhhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCCh
Q 004369 498 ACSNA-GMVYEALGYFEMMQKEYKIKPV-MDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNM 573 (758)
Q Consensus 498 a~~~~-g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~ 573 (758)
.+... |++++|..+++.+.+ .+..|+ ...+..+...+...|++++|++.++++ ...| +...|..+...+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCH
Confidence 88888 888888888888876 333443 567788888888888888888888887 4444 577788888888888999
Q ss_pred hHHHHHHHHHhccCC-CCchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369 574 ELGFYAAEQLLKLKP-KDCESYAMLLDIFVSAGRWEDVAVVKNLTRE 619 (758)
Q Consensus 574 ~~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 619 (758)
++|...++++++..| +++..+..++..+...|+.++|..+++.+.+
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 999999988888888 8888888888888888888888888888765
No 42
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.48 E-value=2.7e-12 Score=126.88 Aligned_cols=196 Identities=9% Similarity=-0.052 Sum_probs=147.0
Q ss_pred HHHHhHHhhhHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004369 423 VVVGTALVNMYKKCGRIERASRVFVEMS---TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAAC 499 (758)
Q Consensus 423 ~~~~~~Li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 499 (758)
...+..+...|...|++++|.+.|+++. ..+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 4556667777777777777777777654 3356677777788888888888888888877752 22456677777778
Q ss_pred hccccHHHHHHHHHHhhhhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHH
Q 004369 500 SNAGMVYEALGYFEMMQKEYKIKP-VMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELG 576 (758)
Q Consensus 500 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a 576 (758)
...|++++|.++++.+.+ .+..| +...+..+...|.+.|++++|.+.++++ ...| +...|..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 888888888888888765 23444 3566777888888888888888888876 3334 567778888888888888888
Q ss_pred HHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhhC
Q 004369 577 FYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREE 620 (758)
Q Consensus 577 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 620 (758)
...++++++..|++...+..++.+|...|++++|.+.++.+.+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888877663
No 43
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.48 E-value=1.3e-12 Score=130.80 Aligned_cols=235 Identities=13% Similarity=-0.001 Sum_probs=177.4
Q ss_pred CCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCh--HHHHhHHhhhHHhcCCHHHHH
Q 004369 366 HNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSD--VVVGTALVNMYKKCGRIERAS 443 (758)
Q Consensus 366 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~--~~~~~~Li~~y~~~g~~~~A~ 443 (758)
.|++++|+..|++..+.. +.+...+..+...+...|++++|...+..+.+.+..++ ...+..+...|.+.|++++|.
T Consensus 16 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~ 94 (272)
T 3u4t_A 16 NNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAI 94 (272)
T ss_dssp TTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHH
Confidence 999999999999998753 22344777788888999999999999999888432222 334788899999999999999
Q ss_pred HHHHhcC---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhc
Q 004369 444 RVFVEMS---TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEY 519 (758)
Q Consensus 444 ~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 519 (758)
+.|++.. +.+...|..+...|...|++++|+..|++..+. .|+ ...+..+...+...+++++|.+.|+.+.+.
T Consensus 95 ~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~- 171 (272)
T 3u4t_A 95 QQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL- 171 (272)
T ss_dssp HHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 9998865 446678999999999999999999999988774 454 455555552444556999999999998763
Q ss_pred CCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHc----CCCCC------HHHHHHHHHHHHHcCChhHHHHHHHHHhcc
Q 004369 520 KIKPVMDHYMCLIDMFVRLGC---IEEAFDFIKKM----DFEPN------EVIWSVFIAGCRRHGNMELGFYAAEQLLKL 586 (758)
Q Consensus 520 ~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m----~~~p~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 586 (758)
.+.+...+..+...+...|+ +++|...++++ ...|+ ..+|..+...+...|++++|...+++++++
T Consensus 172 -~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 172 -KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL 250 (272)
T ss_dssp -STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 22336777778888888887 77777777766 22243 246778888889999999999999999999
Q ss_pred CCCCchhHHHHHHHhhhCC
Q 004369 587 KPKDCESYAMLLDIFVSAG 605 (758)
Q Consensus 587 ~p~~~~~~~~l~~~~~~~g 605 (758)
+|+++.+...+..+....+
T Consensus 251 ~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 251 DPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp CTTCHHHHHHHC-------
T ss_pred CccHHHHHHHhhhhhcccc
Confidence 9999888888776665544
No 44
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.47 E-value=8.7e-12 Score=123.19 Aligned_cols=206 Identities=12% Similarity=-0.015 Sum_probs=176.8
Q ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHH
Q 004369 388 LYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMS---TRTLISWTSMITGF 464 (758)
Q Consensus 388 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~ 464 (758)
...+..+...+...|++++|...+..+.+.. +.+..++..+...|.+.|++++|.+.|+++. ..+...|..+...|
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHH
Confidence 4566777788889999999999999988864 4567888999999999999999999999865 44678899999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHH
Q 004369 465 ANHSLSHQALQLFEDMLLAGVRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEE 543 (758)
Q Consensus 465 ~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 543 (758)
...|++++|++.|+++.+.+..|+ ...+..+...+...|++++|..+++.+.+. .+.+...+..+...|.+.|++++
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--NRNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999988445564 567788888999999999999999999874 23457889999999999999999
Q ss_pred HHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHH
Q 004369 544 AFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAM 596 (758)
Q Consensus 544 A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 596 (758)
|.+.++++ ...| +...+..+...+...|+.++|...++++++..|+++.....
T Consensus 194 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 248 (252)
T 2ho1_A 194 ARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEF 248 (252)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHH
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 99999998 5555 67778889999999999999999999999999998765543
No 45
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.46 E-value=1.4e-12 Score=128.13 Aligned_cols=192 Identities=13% Similarity=0.149 Sum_probs=87.0
Q ss_pred HHhHHhhhHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 004369 425 VGTALVNMYKKCGRIERASRVFVEMS---TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSN 501 (758)
Q Consensus 425 ~~~~Li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 501 (758)
.+..+...|.+.|++++|...|+++. ..+...|..+...|...|++++|+..|+++.+.. +.+...+..+...+..
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 103 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVV 103 (243)
T ss_dssp -----------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHH
Confidence 33444444444555555555544432 1233444455555555555555555555554431 1123444444455555
Q ss_pred cccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHH
Q 004369 502 AGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYA 579 (758)
Q Consensus 502 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~ 579 (758)
.|++++|.++++.+.+. .+.+...+..+...|.+.|++++|.+.++++ ...| +...|..+...+...|++++|...
T Consensus 104 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 181 (243)
T 2q7f_A 104 KEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQ 181 (243)
T ss_dssp TTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred hccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 55555555555555442 1223444555555555555555555555554 2222 344455555555555555555555
Q ss_pred HHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369 580 AEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTRE 619 (758)
Q Consensus 580 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 619 (758)
++++++..|+++..+..++.+|...|++++|.+.++.+.+
T Consensus 182 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 182 FAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 5555555555555555555555555555555555555544
No 46
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.46 E-value=1.4e-12 Score=128.01 Aligned_cols=215 Identities=12% Similarity=0.075 Sum_probs=165.6
Q ss_pred CCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcC---CCChhHHHHHH
Q 004369 385 KPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMS---TRTLISWTSMI 461 (758)
Q Consensus 385 ~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li 461 (758)
.....++..+...+...|+++.|...+..+.+.. +.+..++..+...|.+.|++++|...|++.. ..+...|..+.
T Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 98 (243)
T 2q7f_A 20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAG 98 (243)
T ss_dssp ----------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHH
Confidence 4455677778888899999999999999998854 4568888999999999999999999999865 44678899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCH
Q 004369 462 TGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCI 541 (758)
Q Consensus 462 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 541 (758)
..|...|++++|++.|+++.+.. +.+...+..+...+...|++++|..+++.+.+. .+.+...+..+...|.+.|++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~ 175 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGML 175 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCH
Confidence 99999999999999999999863 345778888888999999999999999999873 234578899999999999999
Q ss_pred HHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhh
Q 004369 542 EEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVS 603 (758)
Q Consensus 542 ~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 603 (758)
++|.+.++++ ...| +..+|..+...+...|++++|...+++++++.|+++..+..+..+...
T Consensus 176 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~ 239 (243)
T 2q7f_A 176 DEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHH 239 (243)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC----
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhh
Confidence 9999999988 4444 577899999999999999999999999999999998888777655443
No 47
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.45 E-value=8.2e-12 Score=134.78 Aligned_cols=366 Identities=8% Similarity=0.018 Sum_probs=193.1
Q ss_pred hcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHhhcCCh---HHHHHHHhccCCCCcchHHHHHHHHhhCC-----C
Q 004369 185 CSSLESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGSL---NSAIKAFNRIREKNVMSWTTVIGACGENG-----E 256 (758)
Q Consensus 185 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~---~~A~~~f~~~~~~~~~~~~~li~~~~~~g-----~ 256 (758)
+.+.|++++|.+++..+.+.| +...+..|..+|...|+. ++|...|++..+.+...+..|...+...| +
T Consensus 13 ~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~ 89 (452)
T 3e4b_A 13 ALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAE 89 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--CCHHH
T ss_pred HHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcC
Confidence 334455555555555555544 222333444555556666 77777777776666666666666454444 6
Q ss_pred hhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCCh---HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH----HH
Q 004369 257 AVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSL---RVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLV----DE 329 (758)
Q Consensus 257 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~----~~ 329 (758)
+++|+..|++..+.|... .+..+...+...+.. ..+.+.+......|. ......|..+|...+.+ +.
T Consensus 90 ~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~~~~~~ 163 (452)
T 3e4b_A 90 HHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYDQHLDD 163 (452)
T ss_dssp HHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGGGGHHH
T ss_pred HHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcccCHHH
Confidence 677888888877765322 333344444333221 223334444443332 33444555555555532 23
Q ss_pred HHHHHccCCCCCeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHhccc---chHH
Q 004369 330 AQKLFDGMSHVNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLV---ALEQ 406 (758)
Q Consensus 330 A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~---~~~~ 406 (758)
+..+++.....++..+..+.. .+...| +.++
T Consensus 164 a~~~~~~a~~~~~~a~~~Lg~----------------------------------------------~~~~~g~~~~~~~ 197 (452)
T 3e4b_A 164 VERICKAALNTTDICYVELAT----------------------------------------------VYQKKQQPEQQAE 197 (452)
T ss_dssp HHHHHHHHTTTCTTHHHHHHH----------------------------------------------HHHHTTCHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHH----------------------------------------------HHHHcCCcccHHH
Confidence 333333333333333333333 444444 4555
Q ss_pred HHHHHHHHHHcCCCChHHHHhHHhhhHHhc----CCHHHHHHHHHhcCCCChhHHHHHHHH-H--HhcCCHHHHHHHHHH
Q 004369 407 GEQIHALTLKTGFLSDVVVGTALVNMYKKC----GRIERASRVFVEMSTRTLISWTSMITG-F--ANHSLSHQALQLFED 479 (758)
Q Consensus 407 a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~----g~~~~A~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~ 479 (758)
|...+....+.| +++...+..|..+|... ++.++|.+.|++....+...+..|... | ...++.++|++.|++
T Consensus 198 A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~ 276 (452)
T 3e4b_A 198 LLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDN 276 (452)
T ss_dssp HHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHH
T ss_pred HHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 555555555544 23333334455555443 678888888877663355667777666 3 457888899999988
Q ss_pred HHHcCCCCCHHHHHHHHHHHhccc-----cHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHH
Q 004369 480 MLLAGVRPNQVTFVGALAACSNAG-----MVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVR----LGCIEEAFDFIKK 550 (758)
Q Consensus 480 m~~~g~~p~~~t~~~ll~a~~~~g-----~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~ 550 (758)
..+.| +...+..+...|. .| ++++|.++|+... .-+...+..|..+|.. ..++++|.+.|++
T Consensus 277 Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 347 (452)
T 3e4b_A 277 GRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLT 347 (452)
T ss_dssp HHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHH
T ss_pred HHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHH
Confidence 88776 4555555555555 45 8899999888775 3456677777777766 3388999999988
Q ss_pred cCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHhccCCCCchhHHHHHHHhh--hCCCchhHHHHHHHh
Q 004369 551 MDFEPNEVIWSVFIAGCRR----HGNMELGFYAAEQLLKLKPKDCESYAMLLDIFV--SAGRWEDVAVVKNLT 617 (758)
Q Consensus 551 m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~~~~a~~~~~~m 617 (758)
.-..-+......|...|.. .+|.++|...++++.+.++.+ ....+..+.. ..++.++|..+.+.-
T Consensus 348 Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~--a~~~l~~l~~~~~~~~~~~a~~~~~~~ 418 (452)
T 3e4b_A 348 AARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPE--ANDLATQLEAPLTPAQRAEGQRLVQQE 418 (452)
T ss_dssp HHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHH--HHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 7222244455666666653 458899999999998877653 3344444432 334555565555543
No 48
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.44 E-value=1.2e-11 Score=133.53 Aligned_cols=183 Identities=12% Similarity=0.068 Sum_probs=97.8
Q ss_pred HHHHhhcCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCCh---HHHHHHHccCCCCCcchHHHHHHHHHhCC--
Q 004369 80 LLQECVNRKSLSNAEIIHAHIVKTGSHQDFFVMTFLVNVYGKCGNM---EEAQKVFDNLPRINVVSWTSLISGYVQNS-- 154 (758)
Q Consensus 80 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~f~~~~~~~~~~~~~li~~~~~~g-- 154 (758)
+...+.+.|++++|.+++....+.|. ++ .+..|-.+|...|+. ++|.+.|++..+.+...+..|...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~-~~--A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGY-SE--AQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC-CT--GGGTCC----------------------------CHHHHHHHHHTC--C
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCC-HH--HHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Confidence 34445567788888888888887762 32 334455566667777 88888888877667777777777566655
Q ss_pred ---CchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccCCh---HHHHHHHHHHHHhCCCCChhHHHHHHHHHhhcC----
Q 004369 155 ---QPELAIHVFLDMLEAGNYPTNVTLGTALTACSSLESI---RLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCG---- 224 (758)
Q Consensus 155 ---~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g---- 224 (758)
++++|+..|++..+.|.. ..+..+-..+...+.. ..+.+.+......| +......|..+|...+
T Consensus 86 ~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGG
T ss_pred CCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCccc
Confidence 678899999888886632 2555555555444332 22344444444433 3455556666666666
Q ss_pred ChHHHHHHHhccCCCCcchHHHHHHHHhhCC---ChhhHHHHHHHHHHCC
Q 004369 225 SLNSAIKAFNRIREKNVMSWTTVIGACGENG---EAVQGLRFFSKMLSEG 271 (758)
Q Consensus 225 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g 271 (758)
..+.|..+++.....+...+..|...|.+.| +.++|++.|++..+.|
T Consensus 160 ~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g 209 (452)
T 3e4b_A 160 HLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG 209 (452)
T ss_dssp GHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC
Confidence 3445555666666666667777777777777 7777777777776655
No 49
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.43 E-value=4.6e-12 Score=132.47 Aligned_cols=225 Identities=12% Similarity=0.092 Sum_probs=190.1
Q ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCC-HHHHHHHHHhcC---CCChhHHHHHHHHH
Q 004369 389 YTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGR-IERASRVFVEMS---TRTLISWTSMITGF 464 (758)
Q Consensus 389 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~-~~~A~~~~~~~~---~~~~~~~~~li~~~ 464 (758)
..|..+...+...|++++|...+..+++.. +.+..+|+.+...|.+.|+ +++|+..|++.. ..+...|+.+...+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 456666677788899999999999999875 5568889999999999997 999999999876 45778999999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHH-cCCHH
Q 004369 465 ANHSLSHQALQLFEDMLLAGVRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVR-LGCIE 542 (758)
Q Consensus 465 ~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~ 542 (758)
...|++++|+..|+++++. .|+ ...|..+..++.+.|++++|+..|+++.+. -+-+...|+.+..+|.+ .|..+
T Consensus 177 ~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcch
Confidence 9999999999999999984 554 678888989999999999999999999873 23357889999999999 66657
Q ss_pred HH-----HHHHHHc-CCCC-CHHHHHHHHHHHHHcC--ChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCC--------
Q 004369 543 EA-----FDFIKKM-DFEP-NEVIWSVFIAGCRRHG--NMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAG-------- 605 (758)
Q Consensus 543 ~A-----~~~~~~m-~~~p-~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-------- 605 (758)
+| ++.+++. ...| +...|..+...+...| ++++|...++++ +.+|+++..+..|+++|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 77 4777776 6667 6778999999998888 689999999998 889999999999999999875
Q ss_pred -CchhHHHHHHHh-hh
Q 004369 606 -RWEDVAVVKNLT-RE 619 (758)
Q Consensus 606 -~~~~a~~~~~~m-~~ 619 (758)
.+++|.++++.+ .+
T Consensus 332 ~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 332 DILNKALELCEILAKE 347 (382)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 258899999887 54
No 50
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.43 E-value=1.8e-11 Score=118.27 Aligned_cols=208 Identities=12% Similarity=0.014 Sum_probs=176.2
Q ss_pred CHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHH
Q 004369 387 DLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMS---TRTLISWTSMITG 463 (758)
Q Consensus 387 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~ 463 (758)
+...+..+...+...|+++.|.+.+..+.+.. +.+..++..+...|...|++++|.+.|++.. ..+...|..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 45567777888899999999999999988864 4467788899999999999999999999875 4467889999999
Q ss_pred HHhc-CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCH
Q 004369 464 FANH-SLSHQALQLFEDMLLAGVRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCI 541 (758)
Q Consensus 464 ~~~~-g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 541 (758)
|... |++++|+..|+++.+.+..|+ ...+..+..++...|++++|...++.+.+. .+.+...+..+...|.+.|++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCH
Confidence 9999 999999999999998444455 567888888999999999999999999873 233478889999999999999
Q ss_pred HHHHHHHHHc-CCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHH
Q 004369 542 EEAFDFIKKM-DFEP--NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAML 597 (758)
Q Consensus 542 ~~A~~~~~~m-~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 597 (758)
++|.+.++++ ...| +...|..+...+...|+.+.+...++.+.+..|+++.....+
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 9999999988 3333 566777788888999999999999999999999988776655
No 51
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.43 E-value=6.4e-11 Score=118.61 Aligned_cols=223 Identities=8% Similarity=-0.066 Sum_probs=186.9
Q ss_pred CHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHh----cCCHHHHHHHHHhcCC-CChhHHHHHH
Q 004369 387 DLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKK----CGRIERASRVFVEMST-RTLISWTSMI 461 (758)
Q Consensus 387 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li 461 (758)
+..++..+...+...|++++|...+....+. .+...+..+...|.. .|++++|...|++..+ .+...+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4455666677778888999999999888883 355677788888998 9999999999988663 3677888899
Q ss_pred HHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cccHHHHHHHHHHhhhhcCCCCCHHHHHHHHH
Q 004369 462 TGFAN----HSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSN----AGMVYEALGYFEMMQKEYKIKPVMDHYMCLID 533 (758)
Q Consensus 462 ~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 533 (758)
..|.. .+++++|+..|++..+.+ +...+..+...+.. .+++++|..+|+...+. + +...+..+..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~ 154 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGS 154 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHH
Confidence 99999 999999999999998875 66778888888888 89999999999998873 3 5667788888
Q ss_pred HHHH----cCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHhccCCCCchhHHHHHHHhhh--
Q 004369 534 MFVR----LGCIEEAFDFIKKMDFEPNEVIWSVFIAGCRR----HGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVS-- 603 (758)
Q Consensus 534 ~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-- 603 (758)
.|.. .+++++|++.+++.--..+...+..+...+.. .+++++|...++++++.+| +..+..|+.+|..
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGE 232 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCC
Confidence 8988 89999999999987212356778889999999 9999999999999999876 6788999999999
Q ss_pred --CCCchhHHHHHHHhhhCC
Q 004369 604 --AGRWEDVAVVKNLTREEK 621 (758)
Q Consensus 604 --~g~~~~a~~~~~~m~~~~ 621 (758)
.|++++|.+.+++..+.+
T Consensus 233 ~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 233 GVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp SSSCCSTTHHHHHHHHHHHT
T ss_pred CcccCHHHHHHHHHHHHHcC
Confidence 999999999999988754
No 52
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.42 E-value=8.6e-12 Score=116.65 Aligned_cols=164 Identities=13% Similarity=0.104 Sum_probs=128.9
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHH
Q 004369 453 TLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCL 531 (758)
Q Consensus 453 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 531 (758)
+...|..+...|...|++++|++.|++..+. .|+ ..++..+..++.+.|++++|...+..+... .+.+...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHH
Confidence 4456777777888888888888888887774 454 556777777888888888888888887653 23345667777
Q ss_pred HHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchh
Q 004369 532 IDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWED 609 (758)
Q Consensus 532 i~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 609 (758)
...+...+++++|.+.+++. ...| +...|..+...+...|++++|+..++++++++|+++.++..++.+|.+.|++++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 78888888888888888877 4445 567788888888888999999999999988889888888889999999999999
Q ss_pred HHHHHHHhhhC
Q 004369 610 VAVVKNLTREE 620 (758)
Q Consensus 610 a~~~~~~m~~~ 620 (758)
|.+.+++..+.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 98888887764
No 53
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.41 E-value=2.1e-12 Score=140.29 Aligned_cols=208 Identities=11% Similarity=0.003 Sum_probs=173.3
Q ss_pred HHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCH-HHHHHHHHhcC---CCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004369 405 EQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRI-ERASRVFVEMS---TRTLISWTSMITGFANHSLSHQALQLFEDM 480 (758)
Q Consensus 405 ~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~-~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 480 (758)
+.+.+.+....+. .+.+...+..+...|...|++ ++|.+.|++.. ..+...|..+...|...|++++|++.|++.
T Consensus 85 ~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 163 (474)
T 4abn_A 85 EKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA 163 (474)
T ss_dssp HHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444443332 234667777888888888888 88888888765 345778999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHhcc---------ccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHc--------CCHHH
Q 004369 481 LLAGVRPNQVTFVGALAACSNA---------GMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRL--------GCIEE 543 (758)
Q Consensus 481 ~~~g~~p~~~t~~~ll~a~~~~---------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~--------g~~~~ 543 (758)
.+. .|+...+..+...+... |++++|...|+++.+. .+.+...|..+..+|... |++++
T Consensus 164 l~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 164 LTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred Hhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 884 68878888888899999 9999999999999873 233478899999999999 99999
Q ss_pred HHHHHHHc-CCCC----CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHh
Q 004369 544 AFDFIKKM-DFEP----NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLT 617 (758)
Q Consensus 544 A~~~~~~m-~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 617 (758)
|++.|++. ...| +...|..+...+...|++++|...++++++++|+++..+..++.++...|++++|.+.++.+
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999998 5555 67889999999999999999999999999999999999999999999999999998765443
No 54
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.40 E-value=6.4e-12 Score=121.06 Aligned_cols=194 Identities=14% Similarity=0.060 Sum_probs=150.9
Q ss_pred CCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcC---CCChhHHHHHH
Q 004369 385 KPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMS---TRTLISWTSMI 461 (758)
Q Consensus 385 ~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li 461 (758)
+++...+..+...+...|++++|...++.+++.. +.+...+..+...|.+.|++++|...|++.. +.+...|..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 3455667777778888999999999999888764 5567888889999999999999999998865 44667888899
Q ss_pred HHHHhc-----------CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHH
Q 004369 462 TGFANH-----------SLSHQALQLFEDMLLAGVRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYM 529 (758)
Q Consensus 462 ~~~~~~-----------g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 529 (758)
..+... |++++|+..|++..+. .|+ ...+..+..++...|++++|...|+++.+. . .+...+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~--~~~~~~~ 155 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALAL-E--DTPEIRS 155 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C--CCHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-c--cchHHHH
Confidence 999999 9999999999999884 565 667888888999999999999999999884 4 6788899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHh
Q 004369 530 CLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLL 584 (758)
Q Consensus 530 ~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 584 (758)
.+..+|...|++++|+..+++. ...| +...+..+...+...|++++|...+++..
T Consensus 156 ~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 156 ALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999988 5566 67788899999999999999999887753
No 55
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.39 E-value=3.6e-11 Score=120.21 Aligned_cols=241 Identities=11% Similarity=-0.014 Sum_probs=182.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHccCCC---CCeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCC--
Q 004369 313 VRNSIMYLYLKCGLVDEAQKLFDGMSH---VNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPD-- 387 (758)
Q Consensus 313 ~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~-- 387 (758)
........+.+.|++++|...|++..+ .+...|..+...|.. .|++++|+..|++..+....|+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~-----------~~~~~~A~~~~~~a~~~~~~~~~~ 73 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYE-----------LAKYDLAQKDIETYFSKVNATKAK 73 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHH-----------TTCHHHHHHHHHHHHTTSCTTTCC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-----------HhhHHHHHHHHHHHHhccCchhHH
Confidence 344566677788888888888887643 334467777778888 8899999999988887432222
Q ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHH
Q 004369 388 LYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMST---RTLISWTSMITGF 464 (758)
Q Consensus 388 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 464 (758)
...+..+...+...|++++|...+..+.+.. +.+..++..+...|.+.|++++|...|++... .+...|..+...+
T Consensus 74 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~ 152 (272)
T 3u4t_A 74 SADFEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAY 152 (272)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHH
Confidence 2347778888889999999999998888864 44667899999999999999999999999874 3567788787344
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcccc---HHHHHHHHHHhhhhcCCCCC------HHHHHHHHHH
Q 004369 465 ANHSLSHQALQLFEDMLLAGVRPN-QVTFVGALAACSNAGM---VYEALGYFEMMQKEYKIKPV------MDHYMCLIDM 534 (758)
Q Consensus 465 ~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~---~~~a~~~~~~~~~~~~~~p~------~~~~~~li~~ 534 (758)
...+++++|++.|+++.+. .|+ ...+..+..++...|+ +++|...++.+.+...-.|+ ...|..+...
T Consensus 153 ~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 230 (272)
T 3u4t_A 153 YYNKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYY 230 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence 4456999999999999985 455 5677777778888887 88899999888764433344 2678889999
Q ss_pred HHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHH
Q 004369 535 FVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGC 567 (758)
Q Consensus 535 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~ 567 (758)
|.+.|++++|.+.++++ ...| +...+..+....
T Consensus 231 ~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~ 265 (272)
T 3u4t_A 231 YTINRDKVKADAAWKNILALDPTNKKAIDGLKMKL 265 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC---
T ss_pred HHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhh
Confidence 99999999999999998 6667 455555554443
No 56
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.38 E-value=1.1e-10 Score=116.79 Aligned_cols=225 Identities=12% Similarity=-0.022 Sum_probs=190.3
Q ss_pred eeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHhc----ccchHHHHHHHHHHHHc
Q 004369 342 LVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSR----LVALEQGEQIHALTLKT 417 (758)
Q Consensus 342 ~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~~~~~~a~~i~~~~~~~ 417 (758)
..++..+...|.. .|++++|+..|++..+. -+...+..+...+.. .+++++|...+....+.
T Consensus 6 ~~a~~~lg~~~~~-----------~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~ 71 (273)
T 1ouv_A 6 PKELVGLGAKSYK-----------EKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL 71 (273)
T ss_dssp HHHHHHHHHHHHH-----------TTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHh-----------CCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC
Confidence 3345556666777 99999999999999883 345667777788888 99999999999999987
Q ss_pred CCCChHHHHhHHhhhHHh----cCCHHHHHHHHHhcCC-CChhHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCC
Q 004369 418 GFLSDVVVGTALVNMYKK----CGRIERASRVFVEMST-RTLISWTSMITGFAN----HSLSHQALQLFEDMLLAGVRPN 488 (758)
Q Consensus 418 ~~~~~~~~~~~Li~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~ 488 (758)
+ +...+..+..+|.. .+++++|...|++..+ .+..++..+...|.. .+++++|+..|++..+.+ +
T Consensus 72 ~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~ 145 (273)
T 1ouv_A 72 N---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---D 145 (273)
T ss_dssp T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred C---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---c
Confidence 6 67788889999999 9999999999998763 467889999999999 999999999999999876 5
Q ss_pred HHHHHHHHHHHhc----cccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHc-CCCCCHHH
Q 004369 489 QVTFVGALAACSN----AGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVR----LGCIEEAFDFIKKM-DFEPNEVI 559 (758)
Q Consensus 489 ~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m-~~~p~~~~ 559 (758)
...+..+...+.. .+++++|..+|+...+. .+...+..+..+|.. .+++++|++.+++. ... +...
T Consensus 146 ~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a 220 (273)
T 1ouv_A 146 GDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE-NGGG 220 (273)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT-CHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC-CHHH
Confidence 5666777777777 89999999999999873 245778889999999 99999999999988 333 3677
Q ss_pred HHHHHHHHHH----cCChhHHHHHHHHHhccCCCCc
Q 004369 560 WSVFIAGCRR----HGNMELGFYAAEQLLKLKPKDC 591 (758)
Q Consensus 560 ~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~ 591 (758)
+..|...+.. .+++++|...++++++++|+++
T Consensus 221 ~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a 256 (273)
T 1ouv_A 221 CFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGA 256 (273)
T ss_dssp HHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHH
Confidence 8888999998 9999999999999999998753
No 57
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.38 E-value=1.4e-11 Score=128.93 Aligned_cols=241 Identities=10% Similarity=0.063 Sum_probs=202.1
Q ss_pred echhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCC-CHHHHHHHHHHHhcccc-hHHHHHHHHHHHHcCCCC
Q 004369 344 TWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKP-DLYTFSSILTICSRLVA-LEQGEQIHALTLKTGFLS 421 (758)
Q Consensus 344 ~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~~~-~~~a~~i~~~~~~~~~~~ 421 (758)
.|+.+...+.+ .|++++|+..|++..+. .| +...|..+..++...|+ +++|...+..+++.. +.
T Consensus 99 a~~~lg~~~~~-----------~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~ 164 (382)
T 2h6f_A 99 VYDYFRAVLQR-----------DERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PK 164 (382)
T ss_dssp HHHHHHHHHHH-----------TCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHHHHHHH-----------CCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CC
Confidence 46666666777 99999999999999875 44 56677888888999996 999999999999875 45
Q ss_pred hHHHHhHHhhhHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHH
Q 004369 422 DVVVGTALVNMYKKCGRIERASRVFVEMS---TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPN-QVTFVGALA 497 (758)
Q Consensus 422 ~~~~~~~Li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~ 497 (758)
+..+|+.+..+|.+.|++++|...|+++. ..+...|..+..++...|++++|+..|+++++. .|+ ...|..+..
T Consensus 165 ~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~ 242 (382)
T 2h6f_A 165 NYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYF 242 (382)
T ss_dssp CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 78899999999999999999999999876 457789999999999999999999999999985 454 678888888
Q ss_pred HHhc-cccHHHH-----HHHHHHhhhhcCCCC-CHHHHHHHHHHHHHcC--CHHHHHHHHHHcCCCC-CHHHHHHHHHHH
Q 004369 498 ACSN-AGMVYEA-----LGYFEMMQKEYKIKP-VMDHYMCLIDMFVRLG--CIEEAFDFIKKMDFEP-NEVIWSVFIAGC 567 (758)
Q Consensus 498 a~~~-~g~~~~a-----~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~p-~~~~~~~ll~~~ 567 (758)
++.+ .|..++| +..|+.+.+ +.| +...|..+..+|.+.| ++++|++.++++...| +...+..|+..+
T Consensus 243 ~l~~l~~~~~eA~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~ 319 (382)
T 2h6f_A 243 VISNTTGYNDRAVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIY 319 (382)
T ss_dssp HHHHTTCSCSHHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred HHHHhcCcchHHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 8888 6665777 578888776 245 4678899999999988 6899999999885566 567788999999
Q ss_pred HHcC--------C-hhHHHHHHHHH-hccCCCCchhHHHHHHHhhh
Q 004369 568 RRHG--------N-MELGFYAAEQL-LKLKPKDCESYAMLLDIFVS 603 (758)
Q Consensus 568 ~~~g--------~-~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~ 603 (758)
.+.| + .++|..+++++ .+++|.....|..++..+..
T Consensus 320 ~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 320 EDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 8874 2 58999999999 99999999999988877654
No 58
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.36 E-value=5.3e-12 Score=134.87 Aligned_cols=253 Identities=13% Similarity=0.051 Sum_probs=200.7
Q ss_pred CCChhHHHHHHHHhHhCCCCCCH----HHHHHHHHHHhcccchHHHHHHHHHHHHc----C-CCChHHHHhHHhhhHHhc
Q 004369 366 HNGGTEALSIFSKLNSSGMKPDL----YTFSSILTICSRLVALEQGEQIHALTLKT----G-FLSDVVVGTALVNMYKKC 436 (758)
Q Consensus 366 ~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~~~~~~a~~i~~~~~~~----~-~~~~~~~~~~Li~~y~~~ 436 (758)
.|++++|+..|++..+.... +. ..+..+...+...|+++.|...+..+.+. + .+....++..+...|...
T Consensus 61 ~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 139 (411)
T 4a1s_A 61 AGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVM 139 (411)
T ss_dssp TTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred hCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHC
Confidence 99999999999999885322 22 46777888889999999999999887653 2 123456788899999999
Q ss_pred CCHHHHHHHHHhcCCC---------ChhHHHHHHHHHHhcCC-----------------HHHHHHHHHHHHHc----CCC
Q 004369 437 GRIERASRVFVEMSTR---------TLISWTSMITGFANHSL-----------------SHQALQLFEDMLLA----GVR 486 (758)
Q Consensus 437 g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~m~~~----g~~ 486 (758)
|++++|...|++.... ...+|..+...|...|+ +++|++.+++..+. +-.
T Consensus 140 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~ 219 (411)
T 4a1s_A 140 GRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDR 219 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred CCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCH
Confidence 9999999999876521 23578889999999999 99999999887652 212
Q ss_pred CC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHc-CCC---C--
Q 004369 487 PN-QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPV----MDHYMCLIDMFVRLGCIEEAFDFIKKM-DFE---P-- 555 (758)
Q Consensus 487 p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~---p-- 555 (758)
|. ..++..+...+...|++++|..++++..+...-.++ ...+..+...|...|++++|.+.+++. ... .
T Consensus 220 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 299 (411)
T 4a1s_A 220 GAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGER 299 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCH
Confidence 22 347777888899999999999999988763211122 237888999999999999999999887 111 1
Q ss_pred --CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCC------CchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369 556 --NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPK------DCESYAMLLDIFVSAGRWEDVAVVKNLTRE 619 (758)
Q Consensus 556 --~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 619 (758)
...++..+...+...|++++|...+++++++.+. ....+..++.+|...|++++|.+.++...+
T Consensus 300 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 300 EVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 2467888999999999999999999999987543 245888999999999999999999998865
No 59
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.35 E-value=3.3e-11 Score=120.60 Aligned_cols=217 Identities=10% Similarity=-0.041 Sum_probs=179.0
Q ss_pred hcccchHHHHHHHHHHHHcCC---CChHHHHhHHhhhHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCCHHH
Q 004369 399 SRLVALEQGEQIHALTLKTGF---LSDVVVGTALVNMYKKCGRIERASRVFVEMS---TRTLISWTSMITGFANHSLSHQ 472 (758)
Q Consensus 399 ~~~~~~~~a~~i~~~~~~~~~---~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~ 472 (758)
...+++++|...+..+.+... +.+..++..+...|...|++++|...|++.. ..+...|..+...|...|++++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHH
Confidence 345789999999999988632 2357788899999999999999999999875 4567899999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-
Q 004369 473 ALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM- 551 (758)
Q Consensus 473 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m- 551 (758)
|+..|+++.+.. +.+...+..+...+...|++++|..+|+.+.+. .|+..........+.+.|++++|...+++.
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999999852 234778889999999999999999999999863 355444555556667889999999999776
Q ss_pred CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCC----CchhHHHHHHHhhhCCCchhHHHHHHHhhhC
Q 004369 552 DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPK----DCESYAMLLDIFVSAGRWEDVAVVKNLTREE 620 (758)
Q Consensus 552 ~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 620 (758)
...| +...| .++..+...++.++|...++++++..|. ++..+..++.+|...|++++|...++.+.+.
T Consensus 172 ~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 172 EKSDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHSCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hcCCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 3233 44444 4777778888899999999999988764 3688999999999999999999999999864
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.35 E-value=1.5e-11 Score=130.92 Aligned_cols=253 Identities=15% Similarity=0.052 Sum_probs=200.4
Q ss_pred CCChhHHHHHHHHhHhCCCCCC----HHHHHHHHHHHhcccchHHHHHHHHHHHHc----CCCC-hHHHHhHHhhhHHhc
Q 004369 366 HNGGTEALSIFSKLNSSGMKPD----LYTFSSILTICSRLVALEQGEQIHALTLKT----GFLS-DVVVGTALVNMYKKC 436 (758)
Q Consensus 366 ~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~----~~~~-~~~~~~~Li~~y~~~ 436 (758)
.|++++|+..|++..+.... + ...+..+...+...|+++.|...+..+.+. +..+ ...++..+...|...
T Consensus 22 ~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 100 (406)
T 3sf4_A 22 SGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVL 100 (406)
T ss_dssp TTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred hccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHc
Confidence 99999999999999885322 2 246777888899999999999998876543 2222 356788899999999
Q ss_pred CCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHhcCC--------------------HHHHHHHHHHHHHc----
Q 004369 437 GRIERASRVFVEMST-----RT----LISWTSMITGFANHSL--------------------SHQALQLFEDMLLA---- 483 (758)
Q Consensus 437 g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~~~---- 483 (758)
|++++|...|++... .+ ..+|..+...|...|+ +++|+..+++..+.
T Consensus 101 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~ 180 (406)
T 3sf4_A 101 GNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTAL 180 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999987652 12 3478889999999999 99999999887652
Q ss_pred CCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHc-C---CC
Q 004369 484 GVRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPV----MDHYMCLIDMFVRLGCIEEAFDFIKKM-D---FE 554 (758)
Q Consensus 484 g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~---~~ 554 (758)
+-.|. ..++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|.+.+++. . ..
T Consensus 181 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 260 (406)
T 3sf4_A 181 GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL 260 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhC
Confidence 21222 346778888899999999999999988753222222 347888999999999999999999887 1 11
Q ss_pred CC----HHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCC------chhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369 555 PN----EVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKD------CESYAMLLDIFVSAGRWEDVAVVKNLTRE 619 (758)
Q Consensus 555 p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 619 (758)
++ ..++..+...+...|++++|...+++++++.+.. ...+..++.+|...|++++|.+.++...+
T Consensus 261 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 261 KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 12 5578889999999999999999999999875432 56888999999999999999999998765
No 61
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.35 E-value=2.4e-11 Score=113.53 Aligned_cols=167 Identities=10% Similarity=0.084 Sum_probs=144.5
Q ss_pred hHHHHhHHhhhHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004369 422 DVVVGTALVNMYKKCGRIERASRVFVEMS---TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAA 498 (758)
Q Consensus 422 ~~~~~~~Li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 498 (758)
+..+|..|...|.+.|++++|.+.|++.. +.++.+|..+...|.+.|++++|+..+++..... .-+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 56788899999999999999999999865 4577889999999999999999999999998852 2235667777778
Q ss_pred HhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHH
Q 004369 499 CSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELG 576 (758)
Q Consensus 499 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a 576 (758)
+...++++.+...+....+. .+.+...+..+...|.+.|++++|++.|++. ...| +..+|..+...+...|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 88999999999999998763 3345778899999999999999999999998 5566 678899999999999999999
Q ss_pred HHHHHHHhccCCCCc
Q 004369 577 FYAAEQLLKLKPKDC 591 (758)
Q Consensus 577 ~~~~~~~~~~~p~~~ 591 (758)
...++++++++|+++
T Consensus 161 ~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 161 VKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHTTHHHH
T ss_pred HHHHHHHHhCCccCH
Confidence 999999999999753
No 62
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.34 E-value=3.2e-11 Score=124.36 Aligned_cols=254 Identities=15% Similarity=0.054 Sum_probs=199.5
Q ss_pred CCChhHHHHHHHHhHhCCCCCC----HHHHHHHHHHHhcccchHHHHHHHHHHHHc----CCC-ChHHHHhHHhhhHHhc
Q 004369 366 HNGGTEALSIFSKLNSSGMKPD----LYTFSSILTICSRLVALEQGEQIHALTLKT----GFL-SDVVVGTALVNMYKKC 436 (758)
Q Consensus 366 ~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~----~~~-~~~~~~~~Li~~y~~~ 436 (758)
.|++++|+..|+++.+.... + ...+..+...+...|+++.|...+..+.+. +.. ....++..+...|...
T Consensus 18 ~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 96 (338)
T 3ro2_A 18 SGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVL 96 (338)
T ss_dssp TTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred hccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHc
Confidence 99999999999999885322 2 356777888899999999999998876543 222 2366788899999999
Q ss_pred CCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHhcCC--------------------HHHHHHHHHHHHHc----
Q 004369 437 GRIERASRVFVEMST-----RT----LISWTSMITGFANHSL--------------------SHQALQLFEDMLLA---- 483 (758)
Q Consensus 437 g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~~~---- 483 (758)
|++++|...|++..+ .+ ..++..+...|...|+ +++|+..+++....
T Consensus 97 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~ 176 (338)
T 3ro2_A 97 GNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTAL 176 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999987652 22 2478888899999999 99999999887642
Q ss_pred CCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHc-C---CC
Q 004369 484 GVRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPV----MDHYMCLIDMFVRLGCIEEAFDFIKKM-D---FE 554 (758)
Q Consensus 484 g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~---~~ 554 (758)
+-.|. ..++..+...+...|++++|..+++.+.+...-.++ ...+..+...|...|++++|.+.+++. . ..
T Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 256 (338)
T 3ro2_A 177 GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL 256 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Confidence 21222 346777888899999999999999988653211122 347888999999999999999999887 1 11
Q ss_pred CC----HHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCC------chhHHHHHHHhhhCCCchhHHHHHHHhhhC
Q 004369 555 PN----EVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKD------CESYAMLLDIFVSAGRWEDVAVVKNLTREE 620 (758)
Q Consensus 555 p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 620 (758)
++ ..++..+...+...|++++|...+++++++.|.. ...+..++.+|...|++++|...++...+.
T Consensus 257 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 257 KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred cchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 22 5568889999999999999999999998875432 447889999999999999999999998763
No 63
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.34 E-value=2.7e-09 Score=119.10 Aligned_cols=432 Identities=9% Similarity=0.012 Sum_probs=272.3
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccCC---hHHHHHHHHHHHHhCC-CCChhHH
Q 004369 138 INVVSWTSLISGYVQNSQPELAIHVFLDMLEAGNYPTNVTLGTALTACSSLES---IRLGKQIHAYVVKYQT-EDDTSVG 213 (758)
Q Consensus 138 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~---~~~a~~~~~~~~~~g~-~~~~~~~ 213 (758)
.|..+|..++..+.+.+.++.+..+|+++... .+.....|..-+..-.+.+. .+.+.++|+..+.... .|++..|
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 47788999999988889999999999999875 33355566667777677777 8889999998887652 4677788
Q ss_pred HHHHHHHhhcCCh--------HHHHHHHhccC------CC-CcchHHHHHHHHhh---------CCChhhHHHHHHHHHH
Q 004369 214 NSLCSLYSTCGSL--------NSAIKAFNRIR------EK-NVMSWTTVIGACGE---------NGEAVQGLRFFSKMLS 269 (758)
Q Consensus 214 ~~Li~~y~~~g~~--------~~A~~~f~~~~------~~-~~~~~~~li~~~~~---------~g~~~~A~~l~~~m~~ 269 (758)
...+....+.++. +...++|+... .+ +...|...|.-... .++.+.+..+|++.+.
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 8777665555543 23446676532 22 23467777754332 2345667778877764
Q ss_pred CCCCCChhhHHHHHHHHcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHcc-------CCC--C
Q 004369 270 EGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDG-------MSH--V 340 (758)
Q Consensus 270 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-------m~~--~ 340 (758)
.....-..+|.......... +...+..++... ..+++.|...+.+ +.. |
T Consensus 223 iP~~~~~~~w~~Y~~fe~~~-~~~~a~~~~~e~---------------------~~~y~~Ar~~~~e~~~~~~~l~r~~p 280 (679)
T 4e6h_A 223 QPMDCLESMWQRYTQWEQDV-NQLTARRHIGEL---------------------SAQYMNARSLYQDWLNITKGLKRNLP 280 (679)
T ss_dssp SCCSSHHHHHHHHHHHHHHH-CTTTHHHHHHHH---------------------HHHHHHHHHHHHHHHHHTTTCCCCCC
T ss_pred CccHHHHHHHHHHHHHHHhc-CcchHHHHHHHh---------------------hHHHHHHHHHHHHHHHHHHhHhhccc
Confidence 21111112221111110000 111122211110 1122233333322 111 0
Q ss_pred Ce---------e----echhHHHHHhhhchhhhchhhcCC-------ChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHhc
Q 004369 341 NL---------V----TWNAMIAGHAQMMDLAKDDLSAHN-------GGTEALSIFSKLNSSGMKPDLYTFSSILTICSR 400 (758)
Q Consensus 341 ~~---------~----~~~~li~~~~~~~~~~~~~l~~~g-------~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 400 (758)
.. . .+..-+..+.+..+..+. ++ ..+.+..+|++.... +.-+...|.....-+..
T Consensus 281 ~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~----~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~ 355 (679)
T 4e6h_A 281 ITLNQATESNLPKPNEYDVQQLLIWLEWIRWESD----NKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGE 355 (679)
T ss_dssp SSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHT----CTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHH
T ss_pred cccccchhccCCCCchhHHHHHHHHHHHHHHHHh----CCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHh
Confidence 00 0 011112222222122111 11 123455677777664 23356666666777777
Q ss_pred ccchHHHH-HHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCC-------------C------------Ch
Q 004369 401 LVALEQGE-QIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMST-------------R------------TL 454 (758)
Q Consensus 401 ~~~~~~a~-~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~-------------~------------~~ 454 (758)
.|+.+.|. .+++..+.. .+.+..++-..+..+-+.|+++.|.++|+++.. | ..
T Consensus 356 ~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~ 434 (679)
T 4e6h_A 356 KNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLT 434 (679)
T ss_dssp HSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchH
Confidence 88888896 999999874 456777788889999999999999999998763 2 12
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHc-C-CCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHH
Q 004369 455 ISWTSMITGFANHSLSHQALQLFEDMLLA-G-VRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLI 532 (758)
Q Consensus 455 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 532 (758)
..|...+....+.|..+.|..+|.+..+. + ..+......+.+.-. ..++++.|..+|+...+.++ -+...+...+
T Consensus 435 ~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~-~~~d~e~Ar~ife~~Lk~~p--~~~~~w~~y~ 511 (679)
T 4e6h_A 435 YVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYH-ISKDTKTACKVLELGLKYFA--TDGEYINKYL 511 (679)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHT-TTSCCHHHHHHHHHHHHHHT--TCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHCC--CchHHHHHHH
Confidence 36888888888889999999999999885 2 222233333333321 23569999999999988643 3456678889
Q ss_pred HHHHHcCCHHHHHHHHHHc-CCCC----CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhh
Q 004369 533 DMFVRLGCIEEAFDFIKKM-DFEP----NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFV 602 (758)
Q Consensus 533 ~~~~~~g~~~~A~~~~~~m-~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 602 (758)
+.....|+.+.|..+|++. ...| ....|...+.--.++|+.+.+..+.+++.+..|+++ ....+++-|.
T Consensus 512 ~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~-~~~~f~~ry~ 585 (679)
T 4e6h_A 512 DFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN-KLEEFTNKYK 585 (679)
T ss_dssp HHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC-HHHHHHHHTC
T ss_pred HHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc-HHHHHHHHhc
Confidence 9999999999999999998 3333 346799999999999999999999999999999874 3444455553
No 64
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.32 E-value=3e-11 Score=136.54 Aligned_cols=162 Identities=17% Similarity=0.186 Sum_probs=134.6
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCC-HHHHHH
Q 004369 453 TLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPV-MDHYMC 530 (758)
Q Consensus 453 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 530 (758)
+..+|+.|...|.+.|++++|++.|++.++ +.|+ ...+..+..++.+.|++++|.+.|+++.+. .|+ ...|..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~n 82 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHH
Confidence 345677888888888888888888888887 4565 567888888888888888888888888762 344 678888
Q ss_pred HHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCch
Q 004369 531 LIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWE 608 (758)
Q Consensus 531 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 608 (758)
+..+|.+.|++++|++.|++. .+.| +...|..|...+...|++++|+..++++++++|+++..+..|+.+|...|+|+
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 888999999999999998887 6666 57788999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhh
Q 004369 609 DVAVVKNLTRE 619 (758)
Q Consensus 609 ~a~~~~~~m~~ 619 (758)
+|.+.+++..+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99888877654
No 65
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.32 E-value=9e-12 Score=132.60 Aligned_cols=244 Identities=14% Similarity=0.029 Sum_probs=173.2
Q ss_pred CCChhHHHHHHHHhHhC----CCCC-CHHHHHHHHHHHhcccchHHHHHHHHHHHHc----CCC-ChHHHHhHHhhhHHh
Q 004369 366 HNGGTEALSIFSKLNSS----GMKP-DLYTFSSILTICSRLVALEQGEQIHALTLKT----GFL-SDVVVGTALVNMYKK 435 (758)
Q Consensus 366 ~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~----~~~-~~~~~~~~Li~~y~~ 435 (758)
.|++++|+..|++.... +-.| ...++..+...+...|+++.|...+..+.+. +.. ....++..+...|..
T Consensus 60 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 139 (406)
T 3sf4_A 60 LHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHA 139 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence 55556666555554321 1122 2345566666777788888888877766542 111 124477778888888
Q ss_pred cCC--------------------HHHHHHHHHhcCC-----C----ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-
Q 004369 436 CGR--------------------IERASRVFVEMST-----R----TLISWTSMITGFANHSLSHQALQLFEDMLLAGV- 485 (758)
Q Consensus 436 ~g~--------------------~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~- 485 (758)
.|+ +++|...+++... . ...+|..+...|...|++++|+..+++..+...
T Consensus 140 ~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 219 (406)
T 3sf4_A 140 KGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 219 (406)
T ss_dssp HHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHH
T ss_pred cCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh
Confidence 888 8888888776431 1 234688888899999999999999998875311
Q ss_pred CCC----HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHc----CC
Q 004369 486 RPN----QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPV----MDHYMCLIDMFVRLGCIEEAFDFIKKM----DF 553 (758)
Q Consensus 486 ~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m----~~ 553 (758)
.++ ..++..+...+...|++++|..+++...+...-.++ ...+..+...|...|++++|.+.+++. +.
T Consensus 220 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 299 (406)
T 3sf4_A 220 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 299 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh
Confidence 122 336778888899999999999999987653211111 567888999999999999999999887 11
Q ss_pred CCC----HHHHHHHHHHHHHcCChhHHHHHHHHHhccC------CCCchhHHHHHHHhhhCCCchh
Q 004369 554 EPN----EVIWSVFIAGCRRHGNMELGFYAAEQLLKLK------PKDCESYAMLLDIFVSAGRWED 609 (758)
Q Consensus 554 ~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~ 609 (758)
.++ ..++..+...+...|++++|...+++++++. +....++..++.+|...|+...
T Consensus 300 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 300 LNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred cCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 122 5578889999999999999999999998863 2335678888999988887643
No 66
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.28 E-value=1.3e-11 Score=125.95 Aligned_cols=233 Identities=12% Similarity=0.111 Sum_probs=169.6
Q ss_pred CHHHHHHHHHHHhcccchHHHHHHHHHHHHc-------CCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCC-------C
Q 004369 387 DLYTFSSILTICSRLVALEQGEQIHALTLKT-------GFLSDVVVGTALVNMYKKCGRIERASRVFVEMST-------R 452 (758)
Q Consensus 387 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-------~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~-------~ 452 (758)
+..++..+...+...|++++|..++..+.+. ..+....++..+...|...|++++|...|++... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4456777888889999999999999888773 3344567888999999999999999999987652 1
Q ss_pred ----ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhc--
Q 004369 453 ----TLISWTSMITGFANHSLSHQALQLFEDMLLA------GVRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEY-- 519 (758)
Q Consensus 453 ----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-- 519 (758)
...+|..+...|...|++++|+..|+++.+. +-.|+ ...+..+...+...|++++|.++++.+.+..
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 2357888999999999999999999998874 22333 4567788889999999999999999987631
Q ss_pred ---CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHc-C---------CCCCH-------HHHHHHHHHHHHcCChhHHHH
Q 004369 520 ---KIKP-VMDHYMCLIDMFVRLGCIEEAFDFIKKM-D---------FEPNE-------VIWSVFIAGCRRHGNMELGFY 578 (758)
Q Consensus 520 ---~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~---------~~p~~-------~~~~~ll~~~~~~g~~~~a~~ 578 (758)
+..| ....+..+...|.+.|++++|.+.++++ . ..|.. ..+..+...+...+.+.++..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 1123 3567888999999999999999999876 1 12211 122333334445567777788
Q ss_pred HHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369 579 AAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTRE 619 (758)
Q Consensus 579 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 619 (758)
.++++....|.++..+..++.+|.+.|++++|.++++...+
T Consensus 266 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 266 WYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp --------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88888888888899999999999999999999999998765
No 67
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.25 E-value=1.7e-10 Score=111.95 Aligned_cols=162 Identities=14% Similarity=0.094 Sum_probs=75.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCC-CHHHHHHHHH
Q 004369 455 ISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKP-VMDHYMCLID 533 (758)
Q Consensus 455 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~ 533 (758)
..|......+...|++++|+..|++..+....++...+..+..++...|++++|...|+...+ ..| +...|..+..
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK---KNYNLANAYIGKSA 84 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH---hCcchHHHHHHHHH
Confidence 334444444444444444444444444432223333333344444444444444444444433 112 2334444444
Q ss_pred HHHHcCCHHHHHHHHHHc-CCCC-CH-------HHHHHHHHHHHHcCChhHHHHHHHHHhccCCC--CchhHHHHHHHhh
Q 004369 534 MFVRLGCIEEAFDFIKKM-DFEP-NE-------VIWSVFIAGCRRHGNMELGFYAAEQLLKLKPK--DCESYAMLLDIFV 602 (758)
Q Consensus 534 ~~~~~g~~~~A~~~~~~m-~~~p-~~-------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~ 602 (758)
.|...|++++|++.+++. ...| +. ..|..+...+...|++++|+..++++++++|+ ++..+..++.+|.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 164 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFY 164 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Confidence 444445555554444444 2222 12 22444444444445555555555555555554 4444555555554
Q ss_pred hCCC---------------------------chhHHHHHHHhhh
Q 004369 603 SAGR---------------------------WEDVAVVKNLTRE 619 (758)
Q Consensus 603 ~~g~---------------------------~~~a~~~~~~m~~ 619 (758)
..|+ +++|...++...+
T Consensus 165 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 208 (228)
T 4i17_A 165 NNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVT 208 (228)
T ss_dssp HHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444 4777777777765
No 68
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.25 E-value=1.3e-09 Score=111.11 Aligned_cols=218 Identities=10% Similarity=0.094 Sum_probs=148.4
Q ss_pred hHHHHHHHHhHhCCCCCCHHHHHHHHHHHh-------cccch-------HHHHHHHHHHHHcCCCChHHHHhHHhhhHHh
Q 004369 370 TEALSIFSKLNSSGMKPDLYTFSSILTICS-------RLVAL-------EQGEQIHALTLKTGFLSDVVVGTALVNMYKK 435 (758)
Q Consensus 370 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~-------~~~~~-------~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~ 435 (758)
++|+..|++..... +-+...|..+...+. ..|++ ++|..+++..++.-.+.+...+..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 57778888887641 224445555555543 34665 7788888887773224456677788888888
Q ss_pred cCCHHHHHHHHHhcCC--C-Chh-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh-ccccHHHHHH
Q 004369 436 CGRIERASRVFVEMST--R-TLI-SWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACS-NAGMVYEALG 510 (758)
Q Consensus 436 ~g~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~-~~g~~~~a~~ 510 (758)
.|++++|..+|++..+ | +.. .|..++..+.+.|+.++|..+|++..+.. +++...|........ ..|++++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888887653 2 333 78888888888888888888888887743 223344443332222 3578888888
Q ss_pred HHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-C---CCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHh
Q 004369 511 YFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-D---FEP--NEVIWSVFIAGCRRHGNMELGFYAAEQLL 584 (758)
Q Consensus 511 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~---~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 584 (758)
+|+.+.+.. +-+...|..+++.+.+.|++++|..+|++. . ..| ....|..++......|+.+.|..++++++
T Consensus 191 ~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888877642 234667777888888888888888888877 2 344 35567777877778888888888888888
Q ss_pred ccCCCCc
Q 004369 585 KLKPKDC 591 (758)
Q Consensus 585 ~~~p~~~ 591 (758)
+..|++.
T Consensus 269 ~~~p~~~ 275 (308)
T 2ond_A 269 TAFREEY 275 (308)
T ss_dssp HHTTTTT
T ss_pred HHccccc
Confidence 8887754
No 69
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.24 E-value=4.1e-11 Score=127.95 Aligned_cols=262 Identities=11% Similarity=0.014 Sum_probs=182.7
Q ss_pred HHHHHHhcCCHHHHHHHHccCCC--CC-e----eechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhC----CCC
Q 004369 317 IMYLYLKCGLVDEAQKLFDGMSH--VN-L----VTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSS----GMK 385 (758)
Q Consensus 317 li~~~~~~g~~~~A~~~~~~m~~--~~-~----~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~----g~~ 385 (758)
+...+...|++++|...|++..+ ++ . ..|..+...|.. .|++++|+..|++..+. +-.
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~-----------~g~~~~A~~~~~~al~~~~~~~~~ 122 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFY-----------LGDYNKAMQYHKHDLTLAKSMNDR 122 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHH-----------HTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHH-----------CCCHHHHHHHHHHHHHHHHHccCc
Confidence 34445555555555555554432 11 1 234444445555 66666666666655431 112
Q ss_pred C-CHHHHHHHHHHHhcccchHHHHHHHHHHHHc----C-CCChHHHHhHHhhhHHhcCC-----------------HHHH
Q 004369 386 P-DLYTFSSILTICSRLVALEQGEQIHALTLKT----G-FLSDVVVGTALVNMYKKCGR-----------------IERA 442 (758)
Q Consensus 386 p-~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~----~-~~~~~~~~~~Li~~y~~~g~-----------------~~~A 442 (758)
| ....+..+...+...|++++|...+..+.+. + .+....++..+...|...|+ +++|
T Consensus 123 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A 202 (411)
T 4a1s_A 123 LGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRA 202 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHH
Confidence 2 3356667777888889999998888776653 2 12235578888899999999 9999
Q ss_pred HHHHHhcCC-----C----ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHhccccHHHH
Q 004369 443 SRVFVEMST-----R----TLISWTSMITGFANHSLSHQALQLFEDMLLAGVR-PN----QVTFVGALAACSNAGMVYEA 508 (758)
Q Consensus 443 ~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~a~~~~g~~~~a 508 (758)
.+.|++... . ....|..+...|...|++++|+..|++..+.... ++ ..++..+...+...|++++|
T Consensus 203 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 282 (411)
T 4a1s_A 203 VEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDA 282 (411)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHH
Confidence 888877542 1 2347888899999999999999999998763111 12 23677888899999999999
Q ss_pred HHHHHHhhhhcCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHc-CC------CC-CHHHHHHHHHHHHHcCChhHH
Q 004369 509 LGYFEMMQKEYKIKP----VMDHYMCLIDMFVRLGCIEEAFDFIKKM-DF------EP-NEVIWSVFIAGCRRHGNMELG 576 (758)
Q Consensus 509 ~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~------~p-~~~~~~~ll~~~~~~g~~~~a 576 (758)
..+++.+.+...-.. ....+..+...|.+.|++++|.+.+++. .. .+ ...++..+...+...|++++|
T Consensus 283 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 362 (411)
T 4a1s_A 283 AEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERA 362 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHH
Confidence 999998765321111 1567888999999999999999999887 11 11 244788899999999999999
Q ss_pred HHHHHHHhccCCC
Q 004369 577 FYAAEQLLKLKPK 589 (758)
Q Consensus 577 ~~~~~~~~~~~p~ 589 (758)
...+++++++.+.
T Consensus 363 ~~~~~~al~~~~~ 375 (411)
T 4a1s_A 363 LKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999987654
No 70
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.22 E-value=4.9e-10 Score=114.34 Aligned_cols=213 Identities=9% Similarity=0.017 Sum_probs=171.4
Q ss_pred HHHHHHHHHHHHcCCCChHHHHhHHhhhHH-------hcCCH-------HHHHHHHHhcCC----CChhHHHHHHHHHHh
Q 004369 405 EQGEQIHALTLKTGFLSDVVVGTALVNMYK-------KCGRI-------ERASRVFVEMST----RTLISWTSMITGFAN 466 (758)
Q Consensus 405 ~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~-------~~g~~-------~~A~~~~~~~~~----~~~~~~~~li~~~~~ 466 (758)
+.|..+++.+++.. +.+..+|..++..+. +.|++ ++|..+|++... .+...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56677777777753 556777877777775 35885 999999998653 355789999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCH-H-HHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH-HcCCHHH
Q 004369 467 HSLSHQALQLFEDMLLAGVRPNQ-V-TFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFV-RLGCIEE 543 (758)
Q Consensus 467 ~g~~~~A~~~~~~m~~~g~~p~~-~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~-~~g~~~~ 543 (758)
.|++++|..+|+++.+ +.|+. . .|..+...+.+.|++++|..+|+++.+. .+++...|...+.... ..|+.++
T Consensus 112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999998 56653 3 7888899999999999999999999863 2334555655444433 3699999
Q ss_pred HHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhcc---CCC-CchhHHHHHHHhhhCCCchhHHHHHHHh
Q 004369 544 AFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKL---KPK-DCESYAMLLDIFVSAGRWEDVAVVKNLT 617 (758)
Q Consensus 544 A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m 617 (758)
|.++|++. ...| +...|..++..+...|+.++|..+++++++. .|+ ....+..++..+.+.|++++|..+++.+
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999988 4445 6788999999999999999999999999996 453 5678889999999999999999999998
Q ss_pred hhCCC
Q 004369 618 REEKL 622 (758)
Q Consensus 618 ~~~~~ 622 (758)
.+...
T Consensus 268 ~~~~p 272 (308)
T 2ond_A 268 FTAFR 272 (308)
T ss_dssp HHHTT
T ss_pred HHHcc
Confidence 87443
No 71
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.22 E-value=3.4e-10 Score=105.33 Aligned_cols=157 Identities=15% Similarity=0.079 Sum_probs=85.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcC
Q 004369 460 MITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLG 539 (758)
Q Consensus 460 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 539 (758)
+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|..+++.+.+. .+.+...+..+...|...|
T Consensus 14 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~ 90 (186)
T 3as5_A 14 KGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYVQVQ 90 (186)
T ss_dssp HHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhc
Confidence 3333444444444444444433321 112333444444444455555555555544432 1223444555555555666
Q ss_pred CHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHh
Q 004369 540 CIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLT 617 (758)
Q Consensus 540 ~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 617 (758)
++++|.+.++++ ...| +...|..+...+...|++++|...++++++..|+++..+..++.+|...|++++|.+.++.+
T Consensus 91 ~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 170 (186)
T 3as5_A 91 KYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKA 170 (186)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666666666555 2222 45556666666666777777777777777777766667777777777777777777776666
Q ss_pred hh
Q 004369 618 RE 619 (758)
Q Consensus 618 ~~ 619 (758)
.+
T Consensus 171 ~~ 172 (186)
T 3as5_A 171 NE 172 (186)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 72
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.21 E-value=8.3e-10 Score=107.06 Aligned_cols=204 Identities=11% Similarity=0.052 Sum_probs=140.0
Q ss_pred CHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHH
Q 004369 387 DLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMS---TRTLISWTSMITG 463 (758)
Q Consensus 387 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~ 463 (758)
|+..+......+...|++++|...+..+++...+++...+..+...|.+.|++++|.+.|++.. +.+...|..+...
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA 85 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 4566667777777888888888888888776543566666667888888888888888887765 2345677778888
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCC-H-------HHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCC---HHHHHHHH
Q 004369 464 FANHSLSHQALQLFEDMLLAGVRPN-Q-------VTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPV---MDHYMCLI 532 (758)
Q Consensus 464 ~~~~g~~~~A~~~~~~m~~~g~~p~-~-------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li 532 (758)
|...|++++|+..|++..+. .|+ . ..|..+...+...|++++|.+.|+.+.+ +.|+ ...|..+.
T Consensus 86 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHHH
Confidence 88888888888888888774 344 3 3466666677777888888888887754 3454 45666677
Q ss_pred HHHHHcCCHHHHHHHHHHc-CCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhh
Q 004369 533 DMFVRLGCIEEAFDFIKKM-DFE-PNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFV 602 (758)
Q Consensus 533 ~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 602 (758)
..|...|+. .++++ ... .+...+..+. ....+.+++|...++++++++|+++.+...|..+..
T Consensus 161 ~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 161 VLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 777655432 22332 111 1233333332 234566799999999999999999988888876654
No 73
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.21 E-value=2.5e-08 Score=111.26 Aligned_cols=411 Identities=11% Similarity=0.045 Sum_probs=242.9
Q ss_pred hHHHHHHHHHHHcCCCCCcchHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCC---hHHHHHHH
Q 004369 56 SLGFQEALSVLTEGPKVQTSSYVSLLQECVNRKSLSNAEIIHAHIVKTGSHQDFFVMTFLVNVYGKCGN---MEEAQKVF 132 (758)
Q Consensus 56 ~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~~f 132 (758)
.+.+..|.+.+..++. |..+|..++..+.+.+.++.++.+++.++.. ++.....|...+..-.+.|. ++.+..+|
T Consensus 49 ~d~i~~lE~~l~~np~-d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 49 SDVIGKLNDMIEEQPT-DIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp SCHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 3445556666666654 8889999999999999999999999999977 47778889999999888898 99999999
Q ss_pred ccCCC-----CCcchHHHHHHHHHhCCCc--------hHHHHHHHHHHH-cCC-CCC-hhhHHHHHHHhcc---------
Q 004369 133 DNLPR-----INVVSWTSLISGYVQNSQP--------ELAIHVFLDMLE-AGN-YPT-NVTLGTALTACSS--------- 187 (758)
Q Consensus 133 ~~~~~-----~~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~~-~g~-~p~-~~t~~~ll~~~~~--------- 187 (758)
++... +++..|..-+.-..+.++. +...++|+.... .|. .|+ ...|...+.-...
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee 206 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE 206 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence 88652 6777888877755554443 334477776554 466 554 3456655554322
Q ss_pred cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHhh-------------cCChHHHHHHHhccC-------C--C------
Q 004369 188 LESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYST-------------CGSLNSAIKAFNRIR-------E--K------ 239 (758)
Q Consensus 188 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~-------------~g~~~~A~~~f~~~~-------~--~------ 239 (758)
.++++.++.+|..++......-..+|......-.. ..+++.|...+.++. . |
T Consensus 207 q~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~ 286 (679)
T 4e6h_A 207 QQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQA 286 (679)
T ss_dssp HHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTC
T ss_pred HhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccc
Confidence 23467788999988853222122333222211111 112344555554311 0 0
Q ss_pred --------C------cchHHHHHHHHhhCCC-------hhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHHH-H
Q 004369 240 --------N------VMSWTTVIGACGENGE-------AVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGA-Q 297 (758)
Q Consensus 240 --------~------~~~~~~li~~~~~~g~-------~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~-~ 297 (758)
+ ...|...|.---.++. .+.+..+|++.+.. ..-+...|.....-+...|+.+.|. +
T Consensus 287 ~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~ 365 (679)
T 4e6h_A 287 TESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITK 365 (679)
T ss_dssp CTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHH
T ss_pred hhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHH
Confidence 0 1245555543333221 23345677777664 2335556666666667778888896 9
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCC-------------CC------------eeechhHHHHH
Q 004369 298 VHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSH-------------VN------------LVTWNAMIAGH 352 (758)
Q Consensus 298 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------------~~------------~~~~~~li~~~ 352 (758)
+++..+... +.+...+-.++...-+.|+++.|+++|+.+.. |+ ...|...+...
T Consensus 366 il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~e 444 (679)
T 4e6h_A 366 YLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTM 444 (679)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHH
Confidence 999998753 56777888899999999999999999988753 11 01233333333
Q ss_pred hhhchhhhchhhcCCChhHHHHHHHHhHhC-C-CCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHh
Q 004369 353 AQMMDLAKDDLSAHNGGTEALSIFSKLNSS-G-MKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALV 430 (758)
Q Consensus 353 ~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~-g-~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li 430 (758)
.+ .|..+.|..+|.+..+. + ..+........+.-. ..++.+.|..+|+..++. ++.+...+...+
T Consensus 445 rR-----------~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~-~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~ 511 (679)
T 4e6h_A 445 KR-----------IQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYH-ISKDTKTACKVLELGLKY-FATDGEYINKYL 511 (679)
T ss_dssp HH-----------HHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHT-TTSCCHHHHHHHHHHHHH-HTTCHHHHHHHH
T ss_pred HH-----------cCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHH-CCCchHHHHHHH
Confidence 33 55556666666666554 1 111122211112111 123356666666555554 333444455555
Q ss_pred hhHHhcCCHHHHHHHHHhcCCCC------hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004369 431 NMYKKCGRIERASRVFVEMSTRT------LISWTSMITGFANHSLSHQALQLFEDMLLA 483 (758)
Q Consensus 431 ~~y~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 483 (758)
+.....|+.+.|..+|++..... ...|...+.--.+.|+.+.+..+.+++.+.
T Consensus 512 ~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 512 DFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp HHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 55555566666666666544221 234555555555555555555555555553
No 74
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.20 E-value=2.2e-10 Score=124.43 Aligned_cols=178 Identities=9% Similarity=-0.038 Sum_probs=157.7
Q ss_pred CHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccccHHHHHHHH
Q 004369 438 RIERASRVFVEMS---TRTLISWTSMITGFANHSLS-HQALQLFEDMLLAGVRPN-QVTFVGALAACSNAGMVYEALGYF 512 (758)
Q Consensus 438 ~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~ 512 (758)
.++++...+++.. ..+...|..+...|...|++ ++|++.|++..+. .|+ ...+..+..++...|++++|.+.|
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3566666666543 34678899999999999999 9999999999985 455 778999999999999999999999
Q ss_pred HHhhhhcCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHc--------CCh
Q 004369 513 EMMQKEYKIKPVMDHYMCLIDMFVRL---------GCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRH--------GNM 573 (758)
Q Consensus 513 ~~~~~~~~~~p~~~~~~~li~~~~~~---------g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~--------g~~ 573 (758)
+.+.+ +.|+...+..+...|... |++++|++.+++. ...| +...|..+..++... |++
T Consensus 161 ~~al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHh---hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 99975 468888999999999999 9999999999998 5566 678899999999998 999
Q ss_pred hHHHHHHHHHhccCC---CCchhHHHHHHHhhhCCCchhHHHHHHHhhhC
Q 004369 574 ELGFYAAEQLLKLKP---KDCESYAMLLDIFVSAGRWEDVAVVKNLTREE 620 (758)
Q Consensus 574 ~~a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 620 (758)
++|...++++++++| +++..|..++.+|...|++++|.+.++...+.
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999 99999999999999999999999999998763
No 75
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.19 E-value=4.4e-11 Score=122.04 Aligned_cols=236 Identities=11% Similarity=0.017 Sum_probs=170.4
Q ss_pred eechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhC-------CCCCCHHHHHHHHHHHhcccchHHHHHHHHHHH
Q 004369 343 VTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSS-------GMKPDLYTFSSILTICSRLVALEQGEQIHALTL 415 (758)
Q Consensus 343 ~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~-------g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~ 415 (758)
.+|..+...|.. .|++++|+.+|+++.+. ........+..+...+...|++++|...+..+.
T Consensus 28 ~~~~~l~~~~~~-----------~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 96 (311)
T 3nf1_A 28 RTLHNLVIQYAS-----------QGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDAL 96 (311)
T ss_dssp HHHHHHHHHHHH-----------TTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-----------cCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 456677777888 99999999999998763 223345677788888999999999999998887
Q ss_pred Hc------CC-CChHHHHhHHhhhHHhcCCHHHHHHHHHhcCC-------C----ChhHHHHHHHHHHhcCCHHHHHHHH
Q 004369 416 KT------GF-LSDVVVGTALVNMYKKCGRIERASRVFVEMST-------R----TLISWTSMITGFANHSLSHQALQLF 477 (758)
Q Consensus 416 ~~------~~-~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~ 477 (758)
+. +. +....++..+...|...|++++|...|++... + ....|..+...|...|++++|++.|
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 176 (311)
T 3nf1_A 97 AIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYY 176 (311)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 64 22 33467888999999999999999999987652 1 2356888999999999999999999
Q ss_pred HHHHHc------CCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhc------CCCCC-------HHHHHHHHHHHHH
Q 004369 478 EDMLLA------GVRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEY------KIKPV-------MDHYMCLIDMFVR 537 (758)
Q Consensus 478 ~~m~~~------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~------~~~p~-------~~~~~~li~~~~~ 537 (758)
+++.+. +-.|+ ..++..+...+...|++++|..+++.+.+.. ...+. ...+..+...+..
T Consensus 177 ~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (311)
T 3nf1_A 177 QRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKD 256 (311)
T ss_dssp HHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC------
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhh
Confidence 999874 22443 4567888889999999999999999987521 11111 1223333444555
Q ss_pred cCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCC
Q 004369 538 LGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPK 589 (758)
Q Consensus 538 ~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 589 (758)
.+.+.+|...+++. ...| +..+|..+...|...|++++|...+++++++.|.
T Consensus 257 ~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 257 GTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp -CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 56666666667666 3344 4667999999999999999999999999988775
No 76
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.19 E-value=1.9e-10 Score=121.56 Aligned_cols=225 Identities=9% Similarity=-0.009 Sum_probs=173.2
Q ss_pred HHHHHhcccchHHHHHHHHHHHHc----CCCC-hHHHHhHHhhhHHhcCCHHHHHHHHHhcCC-----CC-----hhHHH
Q 004369 394 ILTICSRLVALEQGEQIHALTLKT----GFLS-DVVVGTALVNMYKKCGRIERASRVFVEMST-----RT-----LISWT 458 (758)
Q Consensus 394 ll~a~~~~~~~~~a~~i~~~~~~~----~~~~-~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~-----~~-----~~~~~ 458 (758)
....+...|+++.|...+..+.+. +-++ ...++..+...|...|++++|...+++..+ .+ ..+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 445567889999999999988764 2122 356888999999999999999998887541 11 25788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhccccHHHHHHHHHHhhhh---cCC-CCCHHHHH
Q 004369 459 SMITGFANHSLSHQALQLFEDMLLAGV-RPN----QVTFVGALAACSNAGMVYEALGYFEMMQKE---YKI-KPVMDHYM 529 (758)
Q Consensus 459 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~---~~~-~p~~~~~~ 529 (758)
.+...|...|++++|+..|++..+... .++ ..++..+...+...|++++|...+++..+. .+. +.....+.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 899999999999999999999876311 112 247888888999999999999999988761 133 23367788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHc-CC-----CCC-HHHHHHHHHHHHHcCC---hhHHHHHHHHHhccCCCCchhHHHHHH
Q 004369 530 CLIDMFVRLGCIEEAFDFIKKM-DF-----EPN-EVIWSVFIAGCRRHGN---MELGFYAAEQLLKLKPKDCESYAMLLD 599 (758)
Q Consensus 530 ~li~~~~~~g~~~~A~~~~~~m-~~-----~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~ 599 (758)
.+...|.+.|++++|.+.+++. .. .|. ...+..+...+...|+ +++|...+++. ...|.....+..|+.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHH
Confidence 9999999999999999999887 11 222 2335667777888888 77777777776 333455668889999
Q ss_pred HhhhCCCchhHHHHHHHhhh
Q 004369 600 IFVSAGRWEDVAVVKNLTRE 619 (758)
Q Consensus 600 ~~~~~g~~~~a~~~~~~m~~ 619 (758)
+|...|++++|...++...+
T Consensus 348 ~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999998765
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.19 E-value=9.5e-10 Score=102.23 Aligned_cols=168 Identities=13% Similarity=0.021 Sum_probs=144.4
Q ss_pred HHHHhHHhhhHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004369 423 VVVGTALVNMYKKCGRIERASRVFVEMST---RTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAAC 499 (758)
Q Consensus 423 ~~~~~~Li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 499 (758)
...+..+...|...|++++|...|+++.. .+...|..+...+...|++++|+..++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 45667788889999999999999999874 366789999999999999999999999998852 33567888888899
Q ss_pred hccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHH
Q 004369 500 SNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGF 577 (758)
Q Consensus 500 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~ 577 (758)
...|++++|.++++.+.+. .+.+...+..+...|.+.|++++|.+.++++ ...| +..+|..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999873 3446788899999999999999999999988 4444 6788999999999999999999
Q ss_pred HHHHHHhccCCCCchh
Q 004369 578 YAAEQLLKLKPKDCES 593 (758)
Q Consensus 578 ~~~~~~~~~~p~~~~~ 593 (758)
..++++++..|+++..
T Consensus 165 ~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 165 PHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHcCCCchhh
Confidence 9999999998887543
No 78
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.18 E-value=3.8e-10 Score=116.21 Aligned_cols=134 Identities=14% Similarity=0.035 Sum_probs=88.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCC----HH
Q 004369 456 SWTSMITGFANHSLSHQALQLFEDMLLAGV-RPN----QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPV----MD 526 (758)
Q Consensus 456 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~ 526 (758)
.|..+...|...|++++|+..+++..+... .++ ..++..+...+...|++++|..+++...+...-.++ ..
T Consensus 185 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 264 (338)
T 3ro2_A 185 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 264 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence 455566666667777777777666654210 011 235666677777788888888877776542111111 45
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHc-------CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCC
Q 004369 527 HYMCLIDMFVRLGCIEEAFDFIKKM-------DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPK 589 (758)
Q Consensus 527 ~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 589 (758)
.+..+...|...|++++|.+.++++ +..+ ...++..+...+...|++++|...+++++++.+.
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 6777888888888888888888776 1111 1446778888889999999999999999887654
No 79
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.14 E-value=7.9e-10 Score=116.75 Aligned_cols=222 Identities=10% Similarity=0.034 Sum_probs=175.4
Q ss_pred CCChhHHHHHHHHhHhC----CCCC-CHHHHHHHHHHHhcccchHHHHHHHHHHHHc--CC----CChHHHHhHHhhhHH
Q 004369 366 HNGGTEALSIFSKLNSS----GMKP-DLYTFSSILTICSRLVALEQGEQIHALTLKT--GF----LSDVVVGTALVNMYK 434 (758)
Q Consensus 366 ~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~--~~----~~~~~~~~~Li~~y~ 434 (758)
.|++++|+..|++..+. +-.+ ...++..+...+...|+++.|...+....+. .. +....+++.+...|.
T Consensus 116 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~ 195 (383)
T 3ulq_A 116 QREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFL 195 (383)
T ss_dssp TTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHH
Confidence 99999999999998763 1122 3357778888899999999999999887763 11 112467888999999
Q ss_pred hcCCHHHHHHHHHhcCC-----CCh----hHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHh
Q 004369 435 KCGRIERASRVFVEMST-----RTL----ISWTSMITGFANHSLSHQALQLFEDMLLA----GVRPN-QVTFVGALAACS 500 (758)
Q Consensus 435 ~~g~~~~A~~~~~~~~~-----~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~ 500 (758)
..|++++|...|++..+ .+. .+|..+...|...|++++|+..|++..+. +..|+ ..++..+...+.
T Consensus 196 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 275 (383)
T 3ulq_A 196 DLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHY 275 (383)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHH
Confidence 99999999999987652 222 47888999999999999999999998872 33244 567888889999
Q ss_pred ccccHHHHHHHHHHhhhhc---CCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCh
Q 004369 501 NAGMVYEALGYFEMMQKEY---KIKPVMDHYMCLIDMFVRLGC---IEEAFDFIKKMDFEPN-EVIWSVFIAGCRRHGNM 573 (758)
Q Consensus 501 ~~g~~~~a~~~~~~~~~~~---~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~p~-~~~~~~ll~~~~~~g~~ 573 (758)
+.|++++|..++++..+.. +-+.....+..+...|...|+ +++|+.++++.+..|+ ...+..|...+...|++
T Consensus 276 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~ 355 (383)
T 3ulq_A 276 KLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNF 355 (383)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCH
Confidence 9999999999999876532 122223346778888999999 9999999999865553 45678899999999999
Q ss_pred hHHHHHHHHHhccC
Q 004369 574 ELGFYAAEQLLKLK 587 (758)
Q Consensus 574 ~~a~~~~~~~~~~~ 587 (758)
++|...+++++++.
T Consensus 356 ~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 356 QKASAYFLKVEQVR 369 (383)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998754
No 80
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.12 E-value=1.9e-08 Score=105.59 Aligned_cols=254 Identities=11% Similarity=-0.031 Sum_probs=187.0
Q ss_pred CCChhHHHHHHHHhHhCCCCCCHH----HHHHHHHHHhcccchHHHHHHHHHHHHc----CCC-ChHHHHhHHhhhHHhc
Q 004369 366 HNGGTEALSIFSKLNSSGMKPDLY----TFSSILTICSRLVALEQGEQIHALTLKT----GFL-SDVVVGTALVNMYKKC 436 (758)
Q Consensus 366 ~g~~~~A~~l~~~m~~~g~~p~~~----t~~~ll~a~~~~~~~~~a~~i~~~~~~~----~~~-~~~~~~~~Li~~y~~~ 436 (758)
.|++++|...+++........+.. .+..+...+...|+++.|...+....+. +.. ....++..+...|...
T Consensus 27 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 106 (373)
T 1hz4_A 27 DGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQ 106 (373)
T ss_dssp TTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHC
Confidence 899999999999987754222332 4455566778899999999999877653 211 1123466788889999
Q ss_pred CCHHHHHHHHHhcCC----------C-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--C--CHHHHHHHHHHHhc
Q 004369 437 GRIERASRVFVEMST----------R-TLISWTSMITGFANHSLSHQALQLFEDMLLAGVR--P--NQVTFVGALAACSN 501 (758)
Q Consensus 437 g~~~~A~~~~~~~~~----------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~t~~~ll~a~~~ 501 (758)
|++++|...+++... + ....+..+...+...|++++|...+++....... | ...++..+...+..
T Consensus 107 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~ 186 (373)
T 1hz4_A 107 GFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLA 186 (373)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHH
Confidence 999999999887541 1 1245677888899999999999999998874322 1 13567777888899
Q ss_pred cccHHHHHHHHHHhhhhcCCCCC-HHHHH----HHHHHHHHcCCHHHHHHHHHHc-CCCCC-----HHHHHHHHHHHHHc
Q 004369 502 AGMVYEALGYFEMMQKEYKIKPV-MDHYM----CLIDMFVRLGCIEEAFDFIKKM-DFEPN-----EVIWSVFIAGCRRH 570 (758)
Q Consensus 502 ~g~~~~a~~~~~~~~~~~~~~p~-~~~~~----~li~~~~~~g~~~~A~~~~~~m-~~~p~-----~~~~~~ll~~~~~~ 570 (758)
.|++++|..+++.......-... ..... ..+..+...|++++|...+++. ...|. ...+..+...+...
T Consensus 187 ~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~ 266 (373)
T 1hz4_A 187 RGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILL 266 (373)
T ss_dssp HTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHc
Confidence 99999999999988753221111 11111 3445578999999999999998 32232 23567788889999
Q ss_pred CChhHHHHHHHHHhccCCC-----C-chhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369 571 GNMELGFYAAEQLLKLKPK-----D-CESYAMLLDIFVSAGRWEDVAVVKNLTRE 619 (758)
Q Consensus 571 g~~~~a~~~~~~~~~~~p~-----~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 619 (758)
|++++|...++++++..+. + ...+..++.+|...|+.++|...++...+
T Consensus 267 g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 267 GEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9999999999999876432 1 23777889999999999999999888765
No 81
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.09 E-value=8.7e-10 Score=124.62 Aligned_cols=164 Identities=13% Similarity=0.130 Sum_probs=144.7
Q ss_pred CChHHHHhHHhhhHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 004369 420 LSDVVVGTALVNMYKKCGRIERASRVFVEMS---TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPN-QVTFVGA 495 (758)
Q Consensus 420 ~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l 495 (758)
+.+...++.|...|.+.|++++|.+.|++.. ..+..+|+.+...|.+.|++++|++.|++.++ +.|+ ...|..+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 3457788999999999999999999999865 44678999999999999999999999999998 4666 6789999
Q ss_pred HHHHhccccHHHHHHHHHHhhhhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCC
Q 004369 496 LAACSNAGMVYEALGYFEMMQKEYKIKP-VMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGN 572 (758)
Q Consensus 496 l~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~ 572 (758)
..++...|++++|.+.|+++.+. .| +...|..+..+|.+.|++++|++.|++. .+.| +...|..|...+...|+
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQI---NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhccc
Confidence 99999999999999999999763 44 4788999999999999999999999998 6677 57789999999999999
Q ss_pred hhHHHHHHHHHhccCC
Q 004369 573 MELGFYAAEQLLKLKP 588 (758)
Q Consensus 573 ~~~a~~~~~~~~~~~p 588 (758)
+++|.+.+++++++.|
T Consensus 161 ~~~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 161 WTDYDERMKKLVSIVA 176 (723)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCh
Confidence 9999999999988654
No 82
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.09 E-value=3e-09 Score=111.98 Aligned_cols=223 Identities=11% Similarity=0.010 Sum_probs=167.4
Q ss_pred HHHhcccchHHHHHHHHHHHHcC--CC---ChHHHHhHHhhhHHhcCCHHHHHHHHHhcCC-----CC-----hhHHHHH
Q 004369 396 TICSRLVALEQGEQIHALTLKTG--FL---SDVVVGTALVNMYKKCGRIERASRVFVEMST-----RT-----LISWTSM 460 (758)
Q Consensus 396 ~a~~~~~~~~~a~~i~~~~~~~~--~~---~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~-----~~-----~~~~~~l 460 (758)
..+...|+++.|...+..+.+.. .. ....++..+...|...|+++.|...+++... .+ ..+++.+
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 188 (378)
T 3q15_A 109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 34577899999999999887641 11 1356788899999999999999888877541 11 3578889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhc---CCCCCHHHHHHHH
Q 004369 461 ITGFANHSLSHQALQLFEDMLLA----GVRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEY---KIKPVMDHYMCLI 532 (758)
Q Consensus 461 i~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~~~~~~~li 532 (758)
...|...|++++|++.|++..+. +-.+. ..++..+...+...|++++|..++++..+.. +.+.....+..+.
T Consensus 189 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 268 (378)
T 3q15_A 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLS 268 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHH
Confidence 99999999999999999988763 11111 3467788889999999999999999887611 2222367788899
Q ss_pred HHHHHcCCHHHHHHHHHHc----CC--CCC-HHHHHHHHHHHHHcCC---hhHHHHHHHHHhccCCCCchhHHHHHHHhh
Q 004369 533 DMFVRLGCIEEAFDFIKKM----DF--EPN-EVIWSVFIAGCRRHGN---MELGFYAAEQLLKLKPKDCESYAMLLDIFV 602 (758)
Q Consensus 533 ~~~~~~g~~~~A~~~~~~m----~~--~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 602 (758)
..|.+.|++++|.+.+++. .. .|. ...+..+...+...++ +++|...+++. ...|.....+..++..|.
T Consensus 269 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~ 347 (378)
T 3q15_A 269 WTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFE 347 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHH
Confidence 9999999999999999987 21 222 3345556666666777 77777777762 223444567788999999
Q ss_pred hCCCchhHHHHHHHhhh
Q 004369 603 SAGRWEDVAVVKNLTRE 619 (758)
Q Consensus 603 ~~g~~~~a~~~~~~m~~ 619 (758)
..|++++|.+.++...+
T Consensus 348 ~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 348 SSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 99999999999988754
No 83
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.06 E-value=2e-09 Score=107.75 Aligned_cols=197 Identities=13% Similarity=0.148 Sum_probs=122.2
Q ss_pred HHHHhHHhhhHHhcCCHHHHHHHHHhcCC-----------CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CC
Q 004369 423 VVVGTALVNMYKKCGRIERASRVFVEMST-----------RTLISWTSMITGFANHSLSHQALQLFEDMLLA------GV 485 (758)
Q Consensus 423 ~~~~~~Li~~y~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~ 485 (758)
..++..+...|...|++++|...|++... ....+|..+...|...|++++|++.|++..+. .-
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 44555566666666666666666655431 12345666777777777777777777776653 11
Q ss_pred CCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhc-----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHc-------
Q 004369 486 RPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEY-----KIKP-VMDHYMCLIDMFVRLGCIEEAFDFIKKM------- 551 (758)
Q Consensus 486 ~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m------- 551 (758)
.|+ ..++..+...+...|++++|..+++++.+.. +..| ....+..+...|.+.|++++|.+.++++
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 233 4567777778888888888888888776521 1122 3566778888888888888888888776
Q ss_pred ---CCCCC-HHHHHHHHHHHHHcCChh------HHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369 552 ---DFEPN-EVIWSVFIAGCRRHGNME------LGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTRE 619 (758)
Q Consensus 552 ---~~~p~-~~~~~~ll~~~~~~g~~~------~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 619 (758)
...|. ...|..+.......+... .+...++......|..+..+..|+.+|...|++++|.++++...+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 12332 334444444444333322 222233333333455667888999999999999999999988765
No 84
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.03 E-value=8e-09 Score=102.42 Aligned_cols=205 Identities=8% Similarity=-0.023 Sum_probs=125.2
Q ss_pred hHHHHhHHhhhHHhcCCHHHHHHHHHhcCCC---C---hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC-HHHHH
Q 004369 422 DVVVGTALVNMYKKCGRIERASRVFVEMSTR---T---LISWTSMITGFANHSLSHQALQLFEDMLLAGV-RPN-QVTFV 493 (758)
Q Consensus 422 ~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~---~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~t~~ 493 (758)
+...+-.+...+.+.|++++|...|+++... + ...|..+..+|.+.|++++|+..|++..+... .|+ ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 3445555556666666666666666665421 2 34555666666666666666666666665321 111 23344
Q ss_pred HHHHHHhc--------cccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004369 494 GALAACSN--------AGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKMDFEPNEVIWSVFIA 565 (758)
Q Consensus 494 ~ll~a~~~--------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~ 565 (758)
.+..++.. .|++++|...|+.+.+.+.-.+. ....+.......+.+ ...+..+..
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~--~~~a~~~~~~~~~~~---------------~~~~~~la~ 156 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHEL--VDDATQKIRELRAKL---------------ARKQYEAAR 156 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTT--HHHHHHHHHHHHHHH---------------HHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchh--HHHHHHHHHHHHHHH---------------HHHHHHHHH
Confidence 44445555 66666666666666553221111 111111100000000 112466788
Q ss_pred HHHHcCChhHHHHHHHHHhccCCCC---chhHHHHHHHhhhC----------CCchhHHHHHHHhhhCCCCCCCceeEEE
Q 004369 566 GCRRHGNMELGFYAAEQLLKLKPKD---CESYAMLLDIFVSA----------GRWEDVAVVKNLTREEKLSETDDWSWIR 632 (758)
Q Consensus 566 ~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~~~~~~~~~s~~~ 632 (758)
.+...|++++|...++++++..|++ +..+..++.+|... |++++|...++.+.+...
T Consensus 157 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p---------- 226 (261)
T 3qky_A 157 LYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP---------- 226 (261)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT----------
T ss_pred HHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC----------
Confidence 8999999999999999999999984 45788999999877 899999999999886322
Q ss_pred ECCEEEEEecCCCCCCChHHHHHHHHHHHHHHHH
Q 004369 633 IKDKVYSFKPNDGLHPQSAEIFKVLDELVEKAKC 666 (758)
Q Consensus 633 ~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~m~~ 666 (758)
.+|...+....+.++..++.+
T Consensus 227 -------------~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 227 -------------DSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp -------------TCTHHHHHHHHHHHHHHHHHH
T ss_pred -------------CChHHHHHHHHHHHHHHHHHH
Confidence 455566666677777766654
No 85
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.99 E-value=7.8e-09 Score=104.40 Aligned_cols=155 Identities=10% Similarity=-0.072 Sum_probs=75.8
Q ss_pred HHhcccchHHHHHHHHHHHHc----CCCCh-HHHHhHHhhhHHhcCCHHHHHHHHHhcCC-----CC----hhHHHHHHH
Q 004369 397 ICSRLVALEQGEQIHALTLKT----GFLSD-VVVGTALVNMYKKCGRIERASRVFVEMST-----RT----LISWTSMIT 462 (758)
Q Consensus 397 a~~~~~~~~~a~~i~~~~~~~----~~~~~-~~~~~~Li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~ 462 (758)
.+...|++++|...+....+. |.+++ ..+++.+...|.+.|++++|...|++... .+ ..+|+.+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445566777776666655442 21111 34556666666666666666666555431 11 134555555
Q ss_pred HHHhc-CCHHHHHHHHHHHHHcCCCC-C----HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCH-----HHHHHH
Q 004369 463 GFANH-SLSHQALQLFEDMLLAGVRP-N----QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVM-----DHYMCL 531 (758)
Q Consensus 463 ~~~~~-g~~~~A~~~~~~m~~~g~~p-~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~l 531 (758)
.|... |++++|+..|++..+..... + ..++..+...+.+.|++++|..+|+.+.+...-.+.. ..|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 55553 55555555555554421000 0 2234445555555555555555555554421111111 134444
Q ss_pred HHHHHHcCCHHHHHHHHHHc
Q 004369 532 IDMFVRLGCIEEAFDFIKKM 551 (758)
Q Consensus 532 i~~~~~~g~~~~A~~~~~~m 551 (758)
..++...|++++|...+++.
T Consensus 206 g~~~~~~g~~~~A~~~~~~a 225 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEG 225 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGG
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 55555555555555555554
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.98 E-value=5.7e-09 Score=105.43 Aligned_cols=201 Identities=11% Similarity=0.026 Sum_probs=147.4
Q ss_pred chHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHhcCCHHHH
Q 004369 403 ALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMST-----RT----LISWTSMITGFANHSLSHQA 473 (758)
Q Consensus 403 ~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A 473 (758)
++++|...+..+ ...|...|++++|...|++... .+ ..+|+.+...|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 477777776655 4467788999999998887542 12 45899999999999999999
Q ss_pred HHHHHHHHHcCC---CCC--HHHHHHHHHHHhcc-ccHHHHHHHHHHhhhhcCCCCC----HHHHHHHHHHHHHcCCHHH
Q 004369 474 LQLFEDMLLAGV---RPN--QVTFVGALAACSNA-GMVYEALGYFEMMQKEYKIKPV----MDHYMCLIDMFVRLGCIEE 543 (758)
Q Consensus 474 ~~~~~~m~~~g~---~p~--~~t~~~ll~a~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~ 543 (758)
+..|++..+... .+. ..++..+...|... |++++|...|++..+...-..+ ...+..+...|.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 999999876311 111 35788888899996 9999999999998763211111 3568889999999999999
Q ss_pred HHHHHHHc-CCCCC---H-----HHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchh-----HHHHHHHhh--hCCCc
Q 004369 544 AFDFIKKM-DFEPN---E-----VIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCES-----YAMLLDIFV--SAGRW 607 (758)
Q Consensus 544 A~~~~~~m-~~~p~---~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~ 607 (758)
|++.+++. ...|+ . ..|..+...+...|++++|...+++.++++|+.... +..|+..|. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 99999988 33332 1 156778888999999999999999999999975443 344666664 55778
Q ss_pred hhHHHHHHHhh
Q 004369 608 EDVAVVKNLTR 618 (758)
Q Consensus 608 ~~a~~~~~~m~ 618 (758)
++|.+.++.+.
T Consensus 257 ~~A~~~~~~~~ 267 (292)
T 1qqe_A 257 SEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHTTSS
T ss_pred HHHHHHhccCC
Confidence 88887776553
No 87
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.96 E-value=1.1e-09 Score=98.30 Aligned_cols=138 Identities=9% Similarity=-0.036 Sum_probs=97.8
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHH
Q 004369 465 ANHSLSHQALQLFEDMLLAGVRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEE 543 (758)
Q Consensus 465 ~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 543 (758)
...|++++|++.+++... ..|+ ...+..+...|.+.|++++|.+.|++..+. -+-+...|..+..+|.+.|++++
T Consensus 8 ~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 8 RSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp CCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCchHH
Confidence 344555666666655543 2233 234445556667777777777777776652 12246677778888888888888
Q ss_pred HHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHH-HHHHhccCCCCchhHHHHHHHhhhCCC
Q 004369 544 AFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYA-AEQLLKLKPKDCESYAMLLDIFVSAGR 606 (758)
Q Consensus 544 A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~ 606 (758)
|+..|++. .+.| +..+|..+...+.+.|++++|.+. ++++++++|+++.+|.....++...|+
T Consensus 84 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 84 AVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 88888877 5566 577888899999999998776654 589999999999999999888888775
No 88
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.95 E-value=2.1e-07 Score=92.11 Aligned_cols=233 Identities=10% Similarity=-0.054 Sum_probs=161.4
Q ss_pred CCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHH
Q 004369 366 HNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRV 445 (758)
Q Consensus 366 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~ 445 (758)
.|.+..++.-..++.. ..+ .....-+.+++...|+.... ..-.|.......+...+ ..+ |...
T Consensus 26 ~G~yq~~i~e~~~~~~--~~~-~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~----a~~~ 88 (310)
T 3mv2_B 26 TGNFVQCLQEIEKFSK--VTD-NTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK----NIEE 88 (310)
T ss_dssp TTCHHHHTHHHHTSSC--CCC-HHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----CCHH
T ss_pred hhHHHHHHHHHHhcCc--cch-HHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----HHHH
Confidence 7888888874433321 122 23334445666666665431 11223333444333333 322 6777
Q ss_pred HHhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCC
Q 004369 446 FVEMST---RTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEYKI 521 (758)
Q Consensus 446 ~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 521 (758)
|++... ++..++..+..++...|++++|++++.+.+..|..++ ...+..++..+.+.|+.+.|.+.++.|.+.
T Consensus 89 l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--- 165 (310)
T 3mv2_B 89 LENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--- 165 (310)
T ss_dssp HHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---
Confidence 877653 4556667888899999999999999999877654333 556777888999999999999999999753
Q ss_pred CC-----CHHHHHHHHHH--HHHcC--CHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhcc-----
Q 004369 522 KP-----VMDHYMCLIDM--FVRLG--CIEEAFDFIKKM-DFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKL----- 586 (758)
Q Consensus 522 ~p-----~~~~~~~li~~--~~~~g--~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----- 586 (758)
.| +..+...|..+ ....| +.++|..+|+++ ...|+..+-..|+.++.+.|++++|+..++.+.+.
T Consensus 166 ~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~ 245 (310)
T 3mv2_B 166 IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVE 245 (310)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTT
T ss_pred CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence 56 24455555555 33334 999999999999 44566333344555888999999999999988876
Q ss_pred -----CCCCchhHHHHHHHhhhCCCchhHHHHHHHhhhC
Q 004369 587 -----KPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREE 620 (758)
Q Consensus 587 -----~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 620 (758)
+|+|+.++..++.++...|+ +|.++++++++.
T Consensus 246 ~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 246 QKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp TCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred ccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 48899999888888888887 889999999873
No 89
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.94 E-value=9.6e-08 Score=100.41 Aligned_cols=221 Identities=11% Similarity=0.056 Sum_probs=172.5
Q ss_pred CCChhHHHHHHHHhHhCCC-CCC----HHHHHHHHHHHhcccchHHHHHHHHHHHHc----CC-C-ChHHHHhHHhhhHH
Q 004369 366 HNGGTEALSIFSKLNSSGM-KPD----LYTFSSILTICSRLVALEQGEQIHALTLKT----GF-L-SDVVVGTALVNMYK 434 (758)
Q Consensus 366 ~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~----~~-~-~~~~~~~~Li~~y~ 434 (758)
.|++++|+..|++...... .++ ..++..+...+...|+++.|...+....+. +. . ....+++.+...|.
T Consensus 114 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~ 193 (378)
T 3q15_A 114 QKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYD 193 (378)
T ss_dssp TTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHH
Confidence 9999999999999876321 122 346777888899999999999999887653 11 1 13567888999999
Q ss_pred hcCCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHhc
Q 004369 435 KCGRIERASRVFVEMST-----RT----LISWTSMITGFANHSLSHQALQLFEDMLLA----GVRPNQVTFVGALAACSN 501 (758)
Q Consensus 435 ~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~t~~~ll~a~~~ 501 (758)
..|++++|.+.|++..+ .+ ..+++.+...|...|++++|+..|++..+. +.+....++..+...+.+
T Consensus 194 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~ 273 (378)
T 3q15_A 194 DFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCK 273 (378)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHH
Confidence 99999999999987652 22 247888999999999999999999998871 222226678888889999
Q ss_pred cccHHHHHHHHHHhhhhcCC---CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChh
Q 004369 502 AGMVYEALGYFEMMQKEYKI---KPVMDHYMCLIDMFVRLGC---IEEAFDFIKKMDFEPN-EVIWSVFIAGCRRHGNME 574 (758)
Q Consensus 502 ~g~~~~a~~~~~~~~~~~~~---~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~p~-~~~~~~ll~~~~~~g~~~ 574 (758)
.|++++|..++++..+...- +.....+..+...|...|+ +++|+..+++.+..|+ ...+..+...+...|+++
T Consensus 274 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~ 353 (378)
T 3q15_A 274 AGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFE 353 (378)
T ss_dssp TTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHH
Confidence 99999999999998774322 2224556777778888888 9999999999755443 345778899999999999
Q ss_pred HHHHHHHHHhcc
Q 004369 575 LGFYAAEQLLKL 586 (758)
Q Consensus 575 ~a~~~~~~~~~~ 586 (758)
+|...++++++.
T Consensus 354 ~A~~~~~~al~~ 365 (378)
T 3q15_A 354 QAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998764
No 90
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.93 E-value=2.4e-08 Score=98.88 Aligned_cols=203 Identities=9% Similarity=0.002 Sum_probs=147.1
Q ss_pred CCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCh---HHHHhHHhhhHHhcCCHHHHHHHHHhcCC--C-C---hhH
Q 004369 386 PDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSD---VVVGTALVNMYKKCGRIERASRVFVEMST--R-T---LIS 456 (758)
Q Consensus 386 p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~---~~~~~~Li~~y~~~g~~~~A~~~~~~~~~--~-~---~~~ 456 (758)
.+...+......+...|++++|...+..+++.. +.+ ...+..+...|.+.|++++|...|++... | + ...
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 355667777778889999999999999998864 223 67788899999999999999999998763 2 2 346
Q ss_pred HHHHHHHHHh--------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHH
Q 004369 457 WTSMITGFAN--------HSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHY 528 (758)
Q Consensus 457 ~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 528 (758)
|..+..++.. .|++++|+..|++..+. .|+.... ..+...+..+... -...+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~-------------~~a~~~~~~~~~~-----~~~~~ 151 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELV-------------DDATQKIRELRAK-----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTH-------------HHHHHHHHHHHHH-----HHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhH-------------HHHHHHHHHHHHH-----HHHHH
Confidence 7778888888 99999999999999985 4543211 1111111111110 01235
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHc-CCCCC----HHHHHHHHHHHHHc----------CChhHHHHHHHHHhccCCCCch-
Q 004369 529 MCLIDMFVRLGCIEEAFDFIKKM-DFEPN----EVIWSVFIAGCRRH----------GNMELGFYAAEQLLKLKPKDCE- 592 (758)
Q Consensus 529 ~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~- 592 (758)
..+...|.+.|++++|+..|+++ ...|+ ...+..+..++... |++++|...++++++..|+++.
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 231 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL 231 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence 66788899999999999999887 33343 34677788888766 8899999999999999999854
Q ss_pred --hHHHHHHHhhhCCCchh
Q 004369 593 --SYAMLLDIFVSAGRWED 609 (758)
Q Consensus 593 --~~~~l~~~~~~~g~~~~ 609 (758)
....+..++...|++++
T Consensus 232 ~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 232 RTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 44455556655555443
No 91
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.92 E-value=3.6e-09 Score=94.80 Aligned_cols=121 Identities=6% Similarity=-0.031 Sum_probs=102.8
Q ss_pred HHHHhccccHHHHHHHHHHhhhhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCC
Q 004369 496 LAACSNAGMVYEALGYFEMMQKEYKIKPV-MDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGN 572 (758)
Q Consensus 496 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~ 572 (758)
...+...|++++|+..++.... ..|+ ...+-.+...|.+.|++++|++.|++. ...| +..+|..+...+...|+
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc
Confidence 3456678899999999988753 3444 345667899999999999999999998 6677 67889999999999999
Q ss_pred hhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHH-HHHhhh
Q 004369 573 MELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVV-KNLTRE 619 (758)
Q Consensus 573 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~~ 619 (758)
+++|+..++++++++|+++.++..++.+|.+.|++++|.+. +++..+
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987765 476665
No 92
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.91 E-value=8.8e-08 Score=92.42 Aligned_cols=180 Identities=9% Similarity=0.011 Sum_probs=112.4
Q ss_pred HHHhHHhhhHHhcCCHHHHHHHHHhcCC--CC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHH
Q 004369 424 VVGTALVNMYKKCGRIERASRVFVEMST--RT----LISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQ----VTFV 493 (758)
Q Consensus 424 ~~~~~Li~~y~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~ 493 (758)
..+..+...+.+.|++++|...|+++.. |+ ...+..+..+|.+.|++++|+..|+++.+. .|+. ..+.
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~ 82 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHH
Confidence 3444556667777888888888877652 21 245666777778888888888888887764 3332 1233
Q ss_pred HHHHHHhc------------------cccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCC
Q 004369 494 GALAACSN------------------AGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKMDFEP 555 (758)
Q Consensus 494 ~ll~a~~~------------------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p 555 (758)
.+..++.. .|++++|...|+.+.+.+.-.+. .+.++. +.+.+.+..
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~--a~~a~~----~l~~~~~~~---------- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQY--TTDATK----RLVFLKDRL---------- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTT--HHHHHH----HHHHHHHHH----------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChh--HHHHHH----HHHHHHHHH----------
Confidence 33333332 34555555555555442211111 111100 000000000
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCc---hhHHHHHHHhhhCCCchhHHHHHHHhhhCCC
Q 004369 556 NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDC---ESYAMLLDIFVSAGRWEDVAVVKNLTREEKL 622 (758)
Q Consensus 556 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 622 (758)
......+...+...|++++|...++++++..|+++ ..+..++.+|.+.|++++|.+.++.+...+.
T Consensus 147 -~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 -AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred -HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 00113456678899999999999999999999876 5688999999999999999999999887654
No 93
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.91 E-value=2.7e-08 Score=99.34 Aligned_cols=222 Identities=10% Similarity=0.019 Sum_probs=156.9
Q ss_pred CCChhHHHHHHHHhHh-------CCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHc------CC-CChHHHHhHHhh
Q 004369 366 HNGGTEALSIFSKLNS-------SGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKT------GF-LSDVVVGTALVN 431 (758)
Q Consensus 366 ~g~~~~A~~l~~~m~~-------~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~------~~-~~~~~~~~~Li~ 431 (758)
.|++++|+.+|++..+ ...+....++..+...+...|++++|...+..+.+. +. +....++..+..
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 93 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAV 93 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 6777777777776654 122224567788888999999999999999888764 22 334678899999
Q ss_pred hHHhcCCHHHHHHHHHhcCC-------C----ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCCC-HHHHH
Q 004369 432 MYKKCGRIERASRVFVEMST-------R----TLISWTSMITGFANHSLSHQALQLFEDMLLA------GVRPN-QVTFV 493 (758)
Q Consensus 432 ~y~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~t~~ 493 (758)
.|...|++++|...|++... + ...+|..+...|...|++++|+..|+++.+. +-.|+ ..++.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 173 (283)
T 3edt_B 94 LYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKN 173 (283)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 99999999999999988652 1 2457888999999999999999999999874 22343 45788
Q ss_pred HHHHHHhccccHHHHHHHHHHhhhhc------CCCCC-HHHHHHHHHHHHHcC------CHHHHHHHHHHcC-CCC-CHH
Q 004369 494 GALAACSNAGMVYEALGYFEMMQKEY------KIKPV-MDHYMCLIDMFVRLG------CIEEAFDFIKKMD-FEP-NEV 558 (758)
Q Consensus 494 ~ll~a~~~~g~~~~a~~~~~~~~~~~------~~~p~-~~~~~~li~~~~~~g------~~~~A~~~~~~m~-~~p-~~~ 558 (758)
.+...+...|++++|..+++.+.+.. ...+. ...|..+...+...+ .+.++...++..+ ..| ...
T Consensus 174 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (283)
T 3edt_B 174 NLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNT 253 (283)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 88889999999999999999887631 11222 223333333333322 3445555555553 334 355
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhccC
Q 004369 559 IWSVFIAGCRRHGNMELGFYAAEQLLKLK 587 (758)
Q Consensus 559 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 587 (758)
++..+...+...|++++|...++++++..
T Consensus 254 ~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 254 TLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 78899999999999999999999998753
No 94
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.90 E-value=1.3e-08 Score=115.55 Aligned_cols=167 Identities=8% Similarity=-0.076 Sum_probs=120.7
Q ss_pred HhcCCHHHHHHHHHhcC-----------CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhc
Q 004369 434 KKCGRIERASRVFVEMS-----------TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPN-QVTFVGALAACSN 501 (758)
Q Consensus 434 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~ 501 (758)
...|++++|.+.|++.. ..+...|..+...|.+.|++++|++.|+++.+. .|+ ...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHH
Confidence 45677777777776654 335567777777788888888888888887774 343 5566777777778
Q ss_pred cccHHHHHHHHHHhhhhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHH
Q 004369 502 AGMVYEALGYFEMMQKEYKIKP-VMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFY 578 (758)
Q Consensus 502 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~ 578 (758)
.|++++|...|+++.+. .| +...|..+..+|.+.|++++ ++.|++. ...| +...|..+..++...|++++|..
T Consensus 480 ~g~~~~A~~~~~~al~l---~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDT---FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 88888888888877652 23 35677778888888888888 7777776 4555 56677888888888888888888
Q ss_pred HHHHHhccCCCCchhHHHHHHHhhhCCC
Q 004369 579 AAEQLLKLKPKDCESYAMLLDIFVSAGR 606 (758)
Q Consensus 579 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 606 (758)
.++++++++|++...+..++.+|...|+
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 8888888888888888888888776655
No 95
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.89 E-value=2.8e-08 Score=86.44 Aligned_cols=123 Identities=16% Similarity=0.291 Sum_probs=68.4
Q ss_pred HHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCC
Q 004369 495 ALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGN 572 (758)
Q Consensus 495 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~ 572 (758)
+...+...|++++|..+++.+.+. .+.+...+..+...+...|++++|.+.++++ ...| +...|..+...+...|+
T Consensus 7 l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 84 (136)
T 2fo7_A 7 LGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD 84 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcC
Confidence 333444444444444444444331 1122344444555555555555555555554 2222 34455666666666666
Q ss_pred hhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369 573 MELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTRE 619 (758)
Q Consensus 573 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 619 (758)
+++|...++++++..|.++..+..++.+|...|++++|.+.++.+.+
T Consensus 85 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 85 YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 66666666666666666666666666777777777777666666554
No 96
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.87 E-value=4.7e-07 Score=94.86 Aligned_cols=224 Identities=11% Similarity=0.039 Sum_probs=166.6
Q ss_pred HHHhcccchHHHHHHHHHHHHcCCCChH----HHHhHHhhhHHhcCCHHHHHHHHHhcCC-----CCh----hHHHHHHH
Q 004369 396 TICSRLVALEQGEQIHALTLKTGFLSDV----VVGTALVNMYKKCGRIERASRVFVEMST-----RTL----ISWTSMIT 462 (758)
Q Consensus 396 ~a~~~~~~~~~a~~i~~~~~~~~~~~~~----~~~~~Li~~y~~~g~~~~A~~~~~~~~~-----~~~----~~~~~li~ 462 (758)
..+...|+++.+...+....+..-..+. .+++.+...|...|++++|...+++... .+. .+++.+..
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 3456789999999999988775422222 2567778889999999999999987652 222 34667788
Q ss_pred HHHhcCCHHHHHHHHHHHHHc----CCC--CC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCC-CC--CHHHHHHHH
Q 004369 463 GFANHSLSHQALQLFEDMLLA----GVR--PN-QVTFVGALAACSNAGMVYEALGYFEMMQKEYKI-KP--VMDHYMCLI 532 (758)
Q Consensus 463 ~~~~~g~~~~A~~~~~~m~~~----g~~--p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~-~p--~~~~~~~li 532 (758)
.+...|++++|+..+++..+. +.. |. ...+..+...+...|++++|..++++..+...- .+ ....+..+.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 899999999999999988763 222 33 345666777889999999999999988753211 11 245678889
Q ss_pred HHHHHcCCHHHHHHHHHHc----CCCCCHHHHHH-----HHHHHHHcCChhHHHHHHHHHhccCCCCc----hhHHHHHH
Q 004369 533 DMFVRLGCIEEAFDFIKKM----DFEPNEVIWSV-----FIAGCRRHGNMELGFYAAEQLLKLKPKDC----ESYAMLLD 599 (758)
Q Consensus 533 ~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~-----ll~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~l~~ 599 (758)
..+...|++++|...+++. +...+...|.. .+..+...|++++|...++++++..|.+. ..+..++.
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~ 261 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 261 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHH
Confidence 9999999999999999886 21112122322 33447789999999999999998776542 24678899
Q ss_pred HhhhCCCchhHHHHHHHhhh
Q 004369 600 IFVSAGRWEDVAVVKNLTRE 619 (758)
Q Consensus 600 ~~~~~g~~~~a~~~~~~m~~ 619 (758)
++...|++++|...++...+
T Consensus 262 ~~~~~g~~~~A~~~l~~a~~ 281 (373)
T 1hz4_A 262 AQILLGEFEPAEIVLEELNE 281 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999988754
No 97
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.86 E-value=6.3e-08 Score=84.20 Aligned_cols=131 Identities=15% Similarity=0.294 Sum_probs=104.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHH
Q 004369 456 SWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMF 535 (758)
Q Consensus 456 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 535 (758)
.|..+...+...|++++|+.+|+++.+.. +.+...+..+...+...|++++|..+++.+.+. .+.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 56777788888888888888888887753 234667777777888888999999988888763 234566788888889
Q ss_pred HHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCC
Q 004369 536 VRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPK 589 (758)
Q Consensus 536 ~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 589 (758)
.+.|++++|.+.++++ ...| +..+|..+...+...|++++|...++++++.+|+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 9999999999998887 3334 5777888888999999999999999999888875
No 98
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.85 E-value=4.9e-08 Score=98.13 Aligned_cols=176 Identities=9% Similarity=-0.033 Sum_probs=142.3
Q ss_pred CHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhh
Q 004369 438 RIERASRVFVEMSTRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPN-QVTFVGALAACSNAGMVYEALGYFEMMQ 516 (758)
Q Consensus 438 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 516 (758)
..+...+.+......+...+..+...+...|++++|+..|++..+. .|+ ...+..+...+...|++++|...++.+.
T Consensus 101 ~~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~ 178 (287)
T 3qou_A 101 PEEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIP 178 (287)
T ss_dssp CHHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSC
T ss_pred CHHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3455566666666566677788888899999999999999999884 555 5678888889999999999999999886
Q ss_pred hhcCCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCC--c
Q 004369 517 KEYKIKPVMDHYMC-LIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKD--C 591 (758)
Q Consensus 517 ~~~~~~p~~~~~~~-li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~ 591 (758)
.. .|+...... ..-.+.+.|+.++|.+.+++. ...| +...+..|...+...|++++|...++++++.+|++ .
T Consensus 179 ~~---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~ 255 (287)
T 3qou_A 179 LQ---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADG 255 (287)
T ss_dssp GG---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGG
T ss_pred hh---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccc
Confidence 53 455443332 233466778888899888887 5556 67889999999999999999999999999999987 8
Q ss_pred hhHHHHHHHhhhCCCchhHHHHHHHhh
Q 004369 592 ESYAMLLDIFVSAGRWEDVAVVKNLTR 618 (758)
Q Consensus 592 ~~~~~l~~~~~~~g~~~~a~~~~~~m~ 618 (758)
..+..|+.+|...|+.++|...++...
T Consensus 256 ~a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 256 QTRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 899999999999999999988776643
No 99
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.82 E-value=1.8e-08 Score=89.80 Aligned_cols=101 Identities=15% Similarity=-0.015 Sum_probs=91.5
Q ss_pred CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHH
Q 004369 520 KIKPV-MDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAM 596 (758)
Q Consensus 520 ~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 596 (758)
.+.|+ ...+..+...+.+.|++++|++.|++. ...| +...|..+..++...|++++|...++++++++|+++..|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 45554 567888889999999999999999998 6667 68889999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCchhHHHHHHHhhhC
Q 004369 597 LLDIFVSAGRWEDVAVVKNLTREE 620 (758)
Q Consensus 597 l~~~~~~~g~~~~a~~~~~~m~~~ 620 (758)
++.+|...|++++|...++...+.
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999998873
No 100
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.82 E-value=3.2e-08 Score=85.46 Aligned_cols=94 Identities=12% Similarity=0.147 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhh
Q 004369 526 DHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVS 603 (758)
Q Consensus 526 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 603 (758)
..+......|.+.|++++|++.|++. ...| +..+|..+..++...|++++|+..++++++++|+++..|..++.+|..
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 34455555566666666666666555 3334 455556666666666666666666666666666666666666666666
Q ss_pred CCCchhHHHHHHHhhh
Q 004369 604 AGRWEDVAVVKNLTRE 619 (758)
Q Consensus 604 ~g~~~~a~~~~~~m~~ 619 (758)
.|++++|.+.++...+
T Consensus 94 ~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 94 MREWSKAQRAYEDALQ 109 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 6666666666665554
No 101
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.78 E-value=1.9e-08 Score=89.81 Aligned_cols=101 Identities=11% Similarity=0.077 Sum_probs=88.8
Q ss_pred CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHH
Q 004369 520 KIKP-VMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAM 596 (758)
Q Consensus 520 ~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 596 (758)
.+.| +...+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|...++++++++|+++..+..
T Consensus 15 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 94 (148)
T 2vgx_A 15 EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH 94 (148)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 3444 3566777888999999999999999988 5556 67889999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCchhHHHHHHHhhhC
Q 004369 597 LLDIFVSAGRWEDVAVVKNLTREE 620 (758)
Q Consensus 597 l~~~~~~~g~~~~a~~~~~~m~~~ 620 (758)
++.+|...|++++|.+.++...+.
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999988763
No 102
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.77 E-value=6.1e-07 Score=88.79 Aligned_cols=181 Identities=13% Similarity=0.027 Sum_probs=134.3
Q ss_pred HHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCC-----CChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004369 407 GEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMST-----RTLISWTSMITGFANHSLSHQALQLFEDML 481 (758)
Q Consensus 407 a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 481 (758)
+...++...+.+ .++......+..+|...|++++|++++.+... .+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455566555554 34444556888899999999999999998743 345678888999999999999999999998
Q ss_pred HcCCCC-----CHHHHHHHHHH--Hhccc--cHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-
Q 004369 482 LAGVRP-----NQVTFVGALAA--CSNAG--MVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM- 551 (758)
Q Consensus 482 ~~g~~p-----~~~t~~~ll~a--~~~~g--~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m- 551 (758)
+ ..| +..+...+..+ ....| ++.+|..+|+++.+. .|+...-..+..++.+.|++++|.+.++.+
T Consensus 164 ~--~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 N--AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp H--HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred h--cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8 467 35666666656 33334 899999999999764 354333344445899999999999999875
Q ss_pred CC----------CC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHH
Q 004369 552 DF----------EP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYA 595 (758)
Q Consensus 552 ~~----------~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 595 (758)
.. .| |..+.-.++......|+ +|.++++++.+..|+++....
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d 291 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKH 291 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHH
Confidence 22 25 56666567666667786 889999999999999876543
No 103
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.76 E-value=6e-08 Score=83.71 Aligned_cols=115 Identities=12% Similarity=-0.008 Sum_probs=95.5
Q ss_pred CCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHH
Q 004369 485 VRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWS 561 (758)
Q Consensus 485 ~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~ 561 (758)
+.|+ ...+......+.+.|++++|.+.|++..+. -+.+...|..+..+|.+.|++++|++.+++. .+.| +...|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence 4555 345666777888889999999998888763 2345778888999999999999999999887 5566 577899
Q ss_pred HHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHh
Q 004369 562 VFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIF 601 (758)
Q Consensus 562 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 601 (758)
.+..++...|++++|...++++++++|+++.++..|.+++
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 9999999999999999999999999999999888887654
No 104
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.75 E-value=7e-08 Score=89.05 Aligned_cols=153 Identities=10% Similarity=0.036 Sum_probs=87.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHH-HHHc
Q 004369 461 ITGFANHSLSHQALQLFEDMLLAGVRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDM-FVRL 538 (758)
Q Consensus 461 i~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~-~~~~ 538 (758)
...+...|++++|+..|++..+. .|+ ...+..+...+...|++++|...++.+.+. .|+...+..+... +...
T Consensus 13 a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 13 VSELLQQGEHAQALNVIQTLSDE--LQSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCHH--HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHHHhh
Confidence 33444444555555544444331 222 334444444455555555555555544332 1222211111111 1111
Q ss_pred CCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCC--chhHHHHHHHhhhCCCchhHHHHH
Q 004369 539 GCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKD--CESYAMLLDIFVSAGRWEDVAVVK 614 (758)
Q Consensus 539 g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~~ 614 (758)
+...+|.+.+++. ...| +...|..+...+...|++++|...++++++.+|+. +..+..++.+|...|+.++|...+
T Consensus 88 ~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 88 AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 1222355556555 4455 56778888888888888888888888888888764 558888888888888888888877
Q ss_pred HHhh
Q 004369 615 NLTR 618 (758)
Q Consensus 615 ~~m~ 618 (758)
+...
T Consensus 168 ~~al 171 (176)
T 2r5s_A 168 RRQL 171 (176)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 105
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.74 E-value=5.3e-07 Score=85.94 Aligned_cols=171 Identities=6% Similarity=-0.110 Sum_probs=125.1
Q ss_pred HHHHHHhcC-CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccc----cHHHHHHHHHHhh
Q 004369 442 ASRVFVEMS-TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAG----MVYEALGYFEMMQ 516 (758)
Q Consensus 442 A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~~~ 516 (758)
|.+.|++.. ..++.++..+...|...+++++|++.|++..+.| +...+..+...|.. + ++++|.++|+...
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 334444333 3456667777777777788888888888877765 45555666666666 5 7888888888876
Q ss_pred hhcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHc-CCCCC---HHHHHHHHHHHHH----cCChhHHHHHHHHHh
Q 004369 517 KEYKIKPVMDHYMCLIDMFVR----LGCIEEAFDFIKKM-DFEPN---EVIWSVFIAGCRR----HGNMELGFYAAEQLL 584 (758)
Q Consensus 517 ~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m-~~~p~---~~~~~~ll~~~~~----~g~~~~a~~~~~~~~ 584 (758)
+. + +...+..|..+|.. .+++++|++.|++. ...|. ...+..|...|.. .++.++|...++++.
T Consensus 81 ~~-g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 EA-G---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HT-T---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HC-C---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 52 2 45667777777776 77888888888887 44443 6778888888887 778999999999998
Q ss_pred ccCCCCchhHHHHHHHhhhC-C-----CchhHHHHHHHhhhCC
Q 004369 585 KLKPKDCESYAMLLDIFVSA-G-----RWEDVAVVKNLTREEK 621 (758)
Q Consensus 585 ~~~p~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~m~~~~ 621 (758)
+. |.++..+..|+.+|... | ++++|...++...+.|
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 88 66677888899998754 3 8899999998887754
No 106
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.74 E-value=8.4e-08 Score=106.94 Aligned_cols=159 Identities=11% Similarity=0.015 Sum_probs=125.8
Q ss_pred cCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccccHHHHHHH
Q 004369 436 CGRIERASRVFVEMST---RTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPN-QVTFVGALAACSNAGMVYEALGY 511 (758)
Q Consensus 436 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~ 511 (758)
.|++++|.+.|++..+ .+...|..+...|...|++++|++.|++..+. .|+ ...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4789999999998763 35678999999999999999999999999984 554 67888888999999999999999
Q ss_pred HHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHc---CChhHHHHHHHHHhcc
Q 004369 512 FEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRH---GNMELGFYAAEQLLKL 586 (758)
Q Consensus 512 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~ 586 (758)
+++..+. .+.+...+..+..+|.+.|++++|.+.+++. ...| +...+..+...+... |+.++|...++++++.
T Consensus 80 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9999873 2334788999999999999999999999998 5556 577899999999999 9999999999999999
Q ss_pred CCCCchhHHHHH
Q 004369 587 KPKDCESYAMLL 598 (758)
Q Consensus 587 ~p~~~~~~~~l~ 598 (758)
+|++...+..++
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 999988888776
No 107
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.71 E-value=1.7e-07 Score=106.49 Aligned_cols=190 Identities=13% Similarity=0.000 Sum_probs=151.3
Q ss_pred hcccchHHHHHHHHHHH--------HcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhc
Q 004369 399 SRLVALEQGEQIHALTL--------KTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMS---TRTLISWTSMITGFANH 467 (758)
Q Consensus 399 ~~~~~~~~a~~i~~~~~--------~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~ 467 (758)
...|++++|.+.+..+. +. .+.+...+..+...|.+.|++++|.+.|++.. ..+...|..+..+|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 77899999999999888 32 24567788899999999999999999999876 45778999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004369 468 SLSHQALQLFEDMLLAGVRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFD 546 (758)
Q Consensus 468 g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 546 (758)
|++++|++.|++..+. .|+ ...+..+..++.+.|++++ .+.|+++.+. -+.+...|..+..+|.+.|++++|++
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999984 554 6778888889999999999 9999999763 23346789999999999999999999
Q ss_pred HHHHc-CCCCC-HHHHHHHHHHHHHcCC-----hhHHHHHHHHHhccCCCCchhH
Q 004369 547 FIKKM-DFEPN-EVIWSVFIAGCRRHGN-----MELGFYAAEQLLKLKPKDCESY 594 (758)
Q Consensus 547 ~~~~m-~~~p~-~~~~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~p~~~~~~ 594 (758)
.|+++ ...|+ ...|..+..++...++ .+...++.+.+.++.+.++...
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~~ 610 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRVL 610 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTHH
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHHH
Confidence 99998 77886 5678888888766555 3444455555555555554443
No 108
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.70 E-value=1.7e-07 Score=89.02 Aligned_cols=127 Identities=10% Similarity=0.017 Sum_probs=94.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHc
Q 004369 460 MITGFANHSLSHQALQLFEDMLLAGVRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRL 538 (758)
Q Consensus 460 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 538 (758)
+...|.+.|++++|+..|++..+. .|+ ...+..+..++...|++++|...|+++.+. -+.+...|..+...|...
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHH
Confidence 788888999999999999998884 454 667888888889999999999999988763 223467788888887766
Q ss_pred CC--HHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCC
Q 004369 539 GC--IEEAFDFIKKM-DFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKD 590 (758)
Q Consensus 539 g~--~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 590 (758)
|. .+++...+++. ...|....|..+..++...|++++|+..+++++++.|++
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 136 AEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred hHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 54 34556666665 222233345556667777889999999999999999973
No 109
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.70 E-value=1.6e-07 Score=104.59 Aligned_cols=146 Identities=10% Similarity=-0.058 Sum_probs=99.2
Q ss_pred ccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCCHHHHHHHH
Q 004369 401 LVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMST---RTLISWTSMITGFANHSLSHQALQLF 477 (758)
Q Consensus 401 ~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 477 (758)
.|++++|.+.++.+.+.. +.+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|...|++++|++.|
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 367778888887776653 34567788888888888888888888887653 35667888888888888888888888
Q ss_pred HHHHHcCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHc
Q 004369 478 EDMLLAGVRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRL---GCIEEAFDFIKKM 551 (758)
Q Consensus 478 ~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m 551 (758)
++..+. .|+ ...+..+..++...|++++|.+.++++.+. .+.+...+..+...+... |+.++|.+.+++.
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 888874 344 567777888888888888888888888763 223466777888888888 8888888888877
No 110
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.69 E-value=4.9e-07 Score=91.83 Aligned_cols=219 Identities=12% Similarity=0.052 Sum_probs=152.3
Q ss_pred CCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHH
Q 004369 366 HNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRV 445 (758)
Q Consensus 366 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~ 445 (758)
.|++++|.+++++..+... .. + +...++++.|...+..+ ...|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-~~---~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-TS---F------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CC---S------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-cc---c------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 5778888888887765311 10 0 11135666666655543 4567778888888888
Q ss_pred HHhcCC-----CC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CCC--HHHHHHHHHHHhccccHHHHHHH
Q 004369 446 FVEMST-----RT----LISWTSMITGFANHSLSHQALQLFEDMLLAGV---RPN--QVTFVGALAACSNAGMVYEALGY 511 (758)
Q Consensus 446 ~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~t~~~ll~a~~~~g~~~~a~~~ 511 (758)
|.+... .+ ..+|+.+...|...|++++|+..|++..+.-. .|. ..++..+...|.. |++++|...
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 876542 12 34788888999999999999999998765311 122 3567788888888 999999999
Q ss_pred HHHhhhhcCCC---C-CHHHHHHHHHHHHHcCCHHHHHHHHHHc-CC---CCC----HHHHHHHHHHHHHcCChhHHHHH
Q 004369 512 FEMMQKEYKIK---P-VMDHYMCLIDMFVRLGCIEEAFDFIKKM-DF---EPN----EVIWSVFIAGCRRHGNMELGFYA 579 (758)
Q Consensus 512 ~~~~~~~~~~~---p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~---~p~----~~~~~~ll~~~~~~g~~~~a~~~ 579 (758)
|++..+.+.-. + ....+..+...|.+.|++++|++.|++. .+ .++ ...+..++..+...|++++|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99887632111 1 1467888999999999999999999987 21 112 23566777778888999999999
Q ss_pred HHHHhccCCCCchh-----HHHHHHHhhhCCCchhHHH
Q 004369 580 AEQLLKLKPKDCES-----YAMLLDIFVSAGRWEDVAV 612 (758)
Q Consensus 580 ~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~a~~ 612 (758)
+++++ +.|..... ...++..| ..|+.+.+..
T Consensus 218 ~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 218 VRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 99999 98875432 34455555 5677655554
No 111
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.67 E-value=1.6e-07 Score=82.98 Aligned_cols=99 Identities=8% Similarity=-0.020 Sum_probs=86.9
Q ss_pred CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHH
Q 004369 521 IKPV-MDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAML 597 (758)
Q Consensus 521 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 597 (758)
+.|+ ...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|...++++++++|+++..+..+
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 92 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHA 92 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 3443 456667788889999999999999987 5556 678899999999999999999999999999999999999999
Q ss_pred HHHhhhCCCchhHHHHHHHhhh
Q 004369 598 LDIFVSAGRWEDVAVVKNLTRE 619 (758)
Q Consensus 598 ~~~~~~~g~~~~a~~~~~~m~~ 619 (758)
+.+|...|++++|.+.++...+
T Consensus 93 g~~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 93 AECHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999998876
No 112
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.66 E-value=2.6e-06 Score=85.19 Aligned_cols=211 Identities=12% Similarity=0.120 Sum_probs=162.3
Q ss_pred HHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcC--CHHHHHHHHHhcC---CCChhHHHHHHHHH----Hhc---CCHHH
Q 004369 405 EQGEQIHALTLKTGFLSDVVVGTALVNMYKKCG--RIERASRVFVEMS---TRTLISWTSMITGF----ANH---SLSHQ 472 (758)
Q Consensus 405 ~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g--~~~~A~~~~~~~~---~~~~~~~~~li~~~----~~~---g~~~~ 472 (758)
++|....+.++... +.+..+++.-...+...| +++++++.++.+. .++..+|+.-...+ ... +++++
T Consensus 50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~ 128 (306)
T 3dra_A 50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYR 128 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHH
T ss_pred HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHH
Confidence 46667777776654 445666777777777777 8999999998876 44556777655555 555 78999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHH--HHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCC------HHHH
Q 004369 473 ALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVY--EALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGC------IEEA 544 (758)
Q Consensus 473 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~--~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~------~~~A 544 (758)
++++++++.+.. +-|...|..-...+.+.|.++ +++++++.+.+. -.-+-..|+.-..++.+.|. ++++
T Consensus 129 EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 129 EFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhHHHH
Confidence 999999999853 335667777777777788887 999999999873 23456667766667777776 8999
Q ss_pred HHHHHHc-CCCC-CHHHHHHHHHHHHHcCCh-hHHHHHHHHHhccC---CCCchhHHHHHHHhhhCCCchhHHHHHHHhh
Q 004369 545 FDFIKKM-DFEP-NEVIWSVFIAGCRRHGNM-ELGFYAAEQLLKLK---PKDCESYAMLLDIFVSAGRWEDVAVVKNLTR 618 (758)
Q Consensus 545 ~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 618 (758)
++.++++ ...| |...|+.+...+.+.|+. +.....++++++++ |.++..+..|+++|.+.|+.++|.++++.+.
T Consensus 206 l~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 206 LNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp HHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 9999887 5566 788899999999888874 44667888888876 8888999999999999999999999999987
Q ss_pred h
Q 004369 619 E 619 (758)
Q Consensus 619 ~ 619 (758)
+
T Consensus 286 ~ 286 (306)
T 3dra_A 286 S 286 (306)
T ss_dssp H
T ss_pred h
Confidence 5
No 113
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.65 E-value=1.4e-05 Score=86.45 Aligned_cols=373 Identities=10% Similarity=-0.004 Sum_probs=179.4
Q ss_pred hCC-CchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHhhcCC-hHHH
Q 004369 152 QNS-QPELAIHVFLDMLEAGNYPTNVTLGTALTACSSLESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGS-LNSA 229 (758)
Q Consensus 152 ~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~-~~~A 229 (758)
+.| +++.|..+|+.+... .|. ++.+.++++|+..+.. .|+..+|...+..-.+.++ .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 345 377777888777653 233 7788888888888773 3577777777776666653 2344
Q ss_pred HHHHhccCC------CCcchHHHHHHHHh----hCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHc---ccCChHHHH
Q 004369 230 IKAFNRIRE------KNVMSWTTVIGACG----ENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCG---TMLSLRVGA 296 (758)
Q Consensus 230 ~~~f~~~~~------~~~~~~~~li~~~~----~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~---~~~~~~~a~ 296 (758)
..+|+.... .+...|...+.-+. .+|+.+.+..+|++.+.. ++.. +..+-..|. ...+...+.
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~--P~~~--~~~lw~~Y~~fE~~~~~~~~~ 143 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT--PMGS--LSELWKDFENFELELNKITGK 143 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS--CCTT--HHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC--hhhh--HHHHHHHHHHHHHHhccccHH
Confidence 555554331 24456776665443 235566777777777762 1111 111111111 111111121
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCC----CCeeechhHHHHHhhhchhhhchhhcCCChhHH
Q 004369 297 QVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSH----VNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEA 372 (758)
Q Consensus 297 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A 372 (758)
.+... +. +.+..|+.+++.+.. .+...|...+.--.. .+......+..+.+
T Consensus 144 ~~~~~-------------------~~--~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~----~~~~~~~~~~~~Rv 198 (493)
T 2uy1_A 144 KIVGD-------------------TL--PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEME----NGMKLGGRPHESRM 198 (493)
T ss_dssp HHHHH-------------------HH--HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHT----CTTCCCHHHHHHHH
T ss_pred HHHHH-------------------Hh--HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhc----CCccCcchhhHHHH
Confidence 11111 11 122333333332221 122234333222111 00000000013456
Q ss_pred HHHHHHhHhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHH-HHHHHhcC-
Q 004369 373 LSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERA-SRVFVEMS- 450 (758)
Q Consensus 373 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A-~~~~~~~~- 450 (758)
..+|+++.... +.+...+...+.-+.+.|+++.|..+++..+.. +.+...+.. |+...+.++. ..+.+...
T Consensus 199 ~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~ 271 (493)
T 2uy1_A 199 HFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKYSM 271 (493)
T ss_dssp HHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC-
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHHHh
Confidence 77888877642 344666666677777888999999999998887 444433332 2222111111 11111110
Q ss_pred -C-------C---ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-cccHHHHHHHHHHhhhh
Q 004369 451 -T-------R---TLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSN-AGMVYEALGYFEMMQKE 518 (758)
Q Consensus 451 -~-------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~-~g~~~~a~~~~~~~~~~ 518 (758)
. + ....|...+....+.+..+.|..+|++. .. ...+...|......-.. .++.+.|..+|+...+.
T Consensus 272 ~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~ 349 (493)
T 2uy1_A 272 GEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK 349 (493)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH
T ss_pred hccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Confidence 0 0 1134555555555556666676776666 21 11222233221111111 22466666666666654
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHh
Q 004369 519 YKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKMDFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLL 584 (758)
Q Consensus 519 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 584 (758)
++-. ...+...++...+.|+.+.|..+|+++. .....|...+.--..+|+.+.+..++++..
T Consensus 350 ~~~~--~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 350 HPDS--TLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp CTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3322 2344555666666666666666666652 134556666655555666666655555554
No 114
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.64 E-value=1.1e-06 Score=88.43 Aligned_cols=164 Identities=5% Similarity=-0.041 Sum_probs=120.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHhccccHHHHHHHHHHhhhhcC--CCCC--HH
Q 004369 456 SWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQ-----VTFVGALAACSNAGMVYEALGYFEMMQKEYK--IKPV--MD 526 (758)
Q Consensus 456 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~~p~--~~ 526 (758)
.+...+..+...|++++|++.+++..+.....+. ..+..+...+...|++++|...++...+... ..+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 4455667778888999999988888774322111 2233445566778899999999988765211 1122 45
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHc----CCCCC-----HHHHHHHHHHHHHcCChhHHHHHHHHHhccCCC------Cc
Q 004369 527 HYMCLIDMFVRLGCIEEAFDFIKKM----DFEPN-----EVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPK------DC 591 (758)
Q Consensus 527 ~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~ 591 (758)
.|+.+...|...|++++|++.++++ ...|+ ..++..+...|...|++++|...+++++++.++ -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888999999999999999998876 12222 257889999999999999999999999876432 15
Q ss_pred hhHHHHHHHhhhCCCchhH-HHHHHHhhh
Q 004369 592 ESYAMLLDIFVSAGRWEDV-AVVKNLTRE 619 (758)
Q Consensus 592 ~~~~~l~~~~~~~g~~~~a-~~~~~~m~~ 619 (758)
.+|..++.+|.+.|++++| ...++...+
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6788999999999999999 776776543
No 115
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.64 E-value=4.3e-07 Score=86.49 Aligned_cols=120 Identities=13% Similarity=0.055 Sum_probs=76.8
Q ss_pred HHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCC
Q 004369 495 ALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGN 572 (758)
Q Consensus 495 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~ 572 (758)
+...+...|++++|...|+.+. .|+...|..+...|.+.|++++|++.+++. ...| +...|..+...+...|+
T Consensus 12 ~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 12 EGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHccc
Confidence 3344555666666666665442 345556666666666666666666666665 3333 45566666666777777
Q ss_pred hhHHHHHHHHHhccCCCCc----------------hhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369 573 MELGFYAAEQLLKLKPKDC----------------ESYAMLLDIFVSAGRWEDVAVVKNLTRE 619 (758)
Q Consensus 573 ~~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 619 (758)
+++|...++++++..|++. ..+..++.+|...|++++|.+.++...+
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 7777777777777666655 6677777777777777777777777665
No 116
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.63 E-value=5.7e-07 Score=86.66 Aligned_cols=184 Identities=9% Similarity=-0.058 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHcCCC--ChHHHHhHHhhhHHhcCCHHHHHHHHHhcCC--C-Ch---hHHHH
Q 004369 388 LYTFSSILTICSRLVALEQGEQIHALTLKTGFL--SDVVVGTALVNMYKKCGRIERASRVFVEMST--R-TL---ISWTS 459 (758)
Q Consensus 388 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~--~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~--~-~~---~~~~~ 459 (758)
...+......+...|++++|...+..+++.... .....+..+...|.+.|++++|...|++..+ | +. ..|..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 344555667788899999999999999886422 1246778889999999999999999999762 2 22 24555
Q ss_pred HHHHHHh------------------cCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccccHHHHHHHHHHhhhhcC
Q 004369 460 MITGFAN------------------HSLSHQALQLFEDMLLAGVRPNQV-TFVGALAACSNAGMVYEALGYFEMMQKEYK 520 (758)
Q Consensus 460 li~~~~~------------------~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 520 (758)
+..++.. .|+.++|+..|+++.+. .|+.. ...... +.+ .+...+.
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~----~l~------~~~~~~~---- 147 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATK----RLV------FLKDRLA---- 147 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHH----HHH------HHHHHHH----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHH----HHH------HHHHHHH----
Confidence 5555554 57899999999999984 56532 221111 111 0111111
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCch
Q 004369 521 IKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEPN----EVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCE 592 (758)
Q Consensus 521 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 592 (758)
.....+...|.+.|++++|+..|+++ ...|+ ...+..+..++.+.|+.++|...++++....|++..
T Consensus 148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 12235678899999999999999988 44443 246888999999999999999999999999888654
No 117
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.63 E-value=3.7e-06 Score=84.60 Aligned_cols=160 Identities=5% Similarity=-0.041 Sum_probs=118.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHH----HHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCC----HHHHHH
Q 004369 460 MITGFANHSLSHQALQLFEDMLLAG-VRPNQV----TFVGALAACSNAGMVYEALGYFEMMQKEYKIKPV----MDHYMC 530 (758)
Q Consensus 460 li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~ 530 (758)
.+..+...|++++|..++++..+.. ..|+.. .+..+...+...|++++|...|+.+.+...-.++ ...++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 4567788889999999998887642 122221 2334566677778999999999888763222223 346888
Q ss_pred HHHHHHHcCCHHHHHHHHHHc-----CC--C-CC-HHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCC------chhHH
Q 004369 531 LIDMFVRLGCIEEAFDFIKKM-----DF--E-PN-EVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKD------CESYA 595 (758)
Q Consensus 531 li~~~~~~g~~~~A~~~~~~m-----~~--~-p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 595 (758)
+...|...|++++|++.++++ .. . |. ..++..+...|...|++++|...+++++++.+.. +..|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 999999999999999888876 11 1 21 3368889999999999999999999998865332 56889
Q ss_pred HHHHHhhhCCC-chhHHHHHHHhhh
Q 004369 596 MLLDIFVSAGR-WEDVAVVKNLTRE 619 (758)
Q Consensus 596 ~l~~~~~~~g~-~~~a~~~~~~m~~ 619 (758)
.++.+|.+.|+ +++|.+.++...+
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999995 5999988887654
No 118
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.62 E-value=4.7e-07 Score=83.38 Aligned_cols=155 Identities=12% Similarity=-0.002 Sum_probs=117.9
Q ss_pred HhHHhhhHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-Hhc
Q 004369 426 GTALVNMYKKCGRIERASRVFVEMS---TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAA-CSN 501 (758)
Q Consensus 426 ~~~Li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~ 501 (758)
...+...+.+.|++++|...|++.. +.+...|..+...+...|++++|+..|++.... .|+...+...... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHh
Confidence 3455667888999999999999987 346678999999999999999999999988764 3443322221111 122
Q ss_pred cccHHHHHHHHHHhhhhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCC---HHHHHHHHHHHHHcCChhHH
Q 004369 502 AGMVYEALGYFEMMQKEYKIKP-VMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEPN---EVIWSVFIAGCRRHGNMELG 576 (758)
Q Consensus 502 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~---~~~~~~ll~~~~~~g~~~~a 576 (758)
.+...+|...++...+. .| +...+..+...|...|++++|...++++ ...|+ ...|..+...+...|+.++|
T Consensus 87 ~~~~~~a~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 87 QAAESPELKRLEQELAA---NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHTSCHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred hcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 22333467888887753 34 4788889999999999999999999988 66664 55899999999999999999
Q ss_pred HHHHHHHhc
Q 004369 577 FYAAEQLLK 585 (758)
Q Consensus 577 ~~~~~~~~~ 585 (758)
...+++.+.
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988764
No 119
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.60 E-value=2.7e-07 Score=79.53 Aligned_cols=95 Identities=8% Similarity=0.027 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhh
Q 004369 525 MDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFV 602 (758)
Q Consensus 525 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 602 (758)
...+..+...+.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 456677788888999999999998887 4455 67788899999999999999999999999999999999999999999
Q ss_pred hCCCchhHHHHHHHhhh
Q 004369 603 SAGRWEDVAVVKNLTRE 619 (758)
Q Consensus 603 ~~g~~~~a~~~~~~m~~ 619 (758)
..|++++|...++...+
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 99999999999988876
No 120
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.57 E-value=2.6e-06 Score=81.00 Aligned_cols=142 Identities=7% Similarity=-0.072 Sum_probs=79.4
Q ss_pred hHHhhhHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHH
Q 004369 427 TALVNMYKKCGRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVY 506 (758)
Q Consensus 427 ~~Li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 506 (758)
..+...|.+.|++++|...|++...++...|..+...|...|++++|+..|++..+.. +.+...+..+..++...|+++
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~ 88 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYD 88 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHH
Confidence 3444555566666666666666655555666666666666666666666666655532 122344555555555555555
Q ss_pred HHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc--CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 004369 507 EALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM--DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQL 583 (758)
Q Consensus 507 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 583 (758)
+|...|+.+.+...-.+... +... ...| ....|..+...+...|++++|...++++
T Consensus 89 ~A~~~~~~al~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 147 (213)
T 1hh8_A 89 LAIKDLKEALIQLRGNQLID---------------------YKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 147 (213)
T ss_dssp HHHHHHHHHHHTTTTCSEEE---------------------CGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCccHHH---------------------HHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 55555555544211100000 0000 1222 2356777777788888888888888888
Q ss_pred hccCCCC
Q 004369 584 LKLKPKD 590 (758)
Q Consensus 584 ~~~~p~~ 590 (758)
+++.|++
T Consensus 148 l~~~p~~ 154 (213)
T 1hh8_A 148 TSMKSEP 154 (213)
T ss_dssp HTTCCSG
T ss_pred HHcCccc
Confidence 8888765
No 121
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.55 E-value=2.4e-06 Score=81.04 Aligned_cols=135 Identities=11% Similarity=-0.026 Sum_probs=99.3
Q ss_pred HhHHhhhHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhc
Q 004369 426 GTALVNMYKKCGRIERASRVFVEMS---TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPN-QVTFVGALAACSN 501 (758)
Q Consensus 426 ~~~Li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~ 501 (758)
.+.+...|.+.|++++|...|++.. +.+...|..+...|...|++++|+..|++..+. .|+ ..++..+..++..
T Consensus 57 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 57 ATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHH
Confidence 3448889999999999999999866 457789999999999999999999999999984 565 5677777777765
Q ss_pred ccc--HHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCCHHHHHHHHH
Q 004369 502 AGM--VYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEPNEVIWSVFIA 565 (758)
Q Consensus 502 ~g~--~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~ 565 (758)
.|. .+.+...++... ...|....+..+...+...|++++|...|++. ...|+......|..
T Consensus 135 ~~~~~~~~~~~~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~ 198 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 554 344555555442 22333334445566777889999999999998 88898765555443
No 122
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.55 E-value=4.2e-07 Score=83.75 Aligned_cols=120 Identities=5% Similarity=0.017 Sum_probs=93.7
Q ss_pred HhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHH-HHHcCCh--
Q 004369 499 CSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAG-CRRHGNM-- 573 (758)
Q Consensus 499 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~-~~~~g~~-- 573 (758)
+...|++++|...++...+. .+.+...|..+...|...|++++|.+.+++. ...| +...|..+... +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence 34567788888888877663 2335677888888888889999998888887 4444 56678888888 7788888
Q ss_pred hHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhhC
Q 004369 574 ELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREE 620 (758)
Q Consensus 574 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 620 (758)
++|...++++++.+|+++..+..++.+|...|++++|...++.+.+.
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999888764
No 123
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.55 E-value=9.3e-07 Score=88.71 Aligned_cols=160 Identities=9% Similarity=-0.076 Sum_probs=97.7
Q ss_pred hHHHHhHHhhhHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHH
Q 004369 422 DVVVGTALVNMYKKCGRIERASRVFVEMS---TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVG-ALA 497 (758)
Q Consensus 422 ~~~~~~~Li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~ 497 (758)
+......+...+.+.|++++|...|++.. ..+...+..+...+.+.|++++|+..+++.... .|+...... ...
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~ 193 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQI 193 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHH
Confidence 34444455555666666666666666544 234456666666666666777776666666543 344332222 222
Q ss_pred HHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCC---HHHHHHHHHHHHHcCCh
Q 004369 498 ACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEPN---EVIWSVFIAGCRRHGNM 573 (758)
Q Consensus 498 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~---~~~~~~ll~~~~~~g~~ 573 (758)
.+...+..++|...+++..+. -+.+...+..+...|...|++++|++.++++ ...|+ ...+..|+..+...|+.
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHhhcccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 345556666667777666552 2234566777777777777777777777776 33443 55677777777777877
Q ss_pred hHHHHHHHHHhc
Q 004369 574 ELGFYAAEQLLK 585 (758)
Q Consensus 574 ~~a~~~~~~~~~ 585 (758)
++|...+++.+.
T Consensus 272 ~~a~~~~r~al~ 283 (287)
T 3qou_A 272 DALASXYRRQLY 283 (287)
T ss_dssp CHHHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 777777776653
No 124
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.55 E-value=6.9e-07 Score=77.00 Aligned_cols=118 Identities=8% Similarity=-0.042 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHH
Q 004369 489 QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAG 566 (758)
Q Consensus 489 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~ 566 (758)
...+..+...+...|++++|...++.+.+. .+.+...+..+...+...|++++|.+.+++. ...| +...|..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 345555666666777777777777776653 2234667777788888888888888888776 3344 56778888889
Q ss_pred HHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCch
Q 004369 567 CRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWE 608 (758)
Q Consensus 567 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 608 (758)
+...|++++|...++++++..|+++..+..++.++...|+++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999889999999998888753
No 125
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.54 E-value=7.1e-07 Score=80.88 Aligned_cols=127 Identities=13% Similarity=0.082 Sum_probs=95.2
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHH
Q 004369 491 TFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCR 568 (758)
Q Consensus 491 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~ 568 (758)
.+..+...+...|++++|...|+...+. .+.+...+..+...+...|++++|.+.+++. ...| +...|..+...+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3455555666677777777777776652 2234667777788888888888888888776 4444 5677888888999
Q ss_pred HcCChhHHHHHHHHHhccCCCCchhHHHHHHH--hhhCCCchhHHHHHHHhhh
Q 004369 569 RHGNMELGFYAAEQLLKLKPKDCESYAMLLDI--FVSAGRWEDVAVVKNLTRE 619 (758)
Q Consensus 569 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~~m~~ 619 (758)
..|++++|...+++++++.|++...+..+..+ +...|++++|.+.++...+
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999999999999988877554444 7888999999988876643
No 126
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.54 E-value=1.2e-06 Score=74.74 Aligned_cols=115 Identities=17% Similarity=0.270 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHH
Q 004369 489 QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAG 566 (758)
Q Consensus 489 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~ 566 (758)
...+..+...+...|++++|.++++.+.+. .+.+...+..+...+.+.|++++|...++++ ...| +..+|..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 345556666667777777777777776653 2234566777788888888888888888777 3334 56778888888
Q ss_pred HHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCC
Q 004369 567 CRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAG 605 (758)
Q Consensus 567 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 605 (758)
+...|++++|...++++++..|+++..+..++.++...|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 999999999999999999999998888888888876544
No 127
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.50 E-value=5.3e-06 Score=78.86 Aligned_cols=173 Identities=13% Similarity=-0.037 Sum_probs=124.0
Q ss_pred HHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCC-CChhHHHHHHHHHHhcC----CHHHHHHHHHHHH
Q 004369 407 GEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMST-RTLISWTSMITGFANHS----LSHQALQLFEDML 481 (758)
Q Consensus 407 a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~ 481 (758)
|.+.+....+.| +...+..|..+|...+++++|.+.|++..+ .+...+..|...|.. + +.++|++.|++..
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 334444444443 555666677777777788888887777653 355667777777766 5 7888888888887
Q ss_pred HcCCCCCHHHHHHHHHHHhc----cccHHHHHHHHHHhhhhcCCCCC---HHHHHHHHHHHHH----cCCHHHHHHHHHH
Q 004369 482 LAGVRPNQVTFVGALAACSN----AGMVYEALGYFEMMQKEYKIKPV---MDHYMCLIDMFVR----LGCIEEAFDFIKK 550 (758)
Q Consensus 482 ~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~----~g~~~~A~~~~~~ 550 (758)
+.| +...+..+...+.. .+++++|.++|+...+. .|. ...+..|..+|.. .+++++|++.|++
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD---SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS---TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc---CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 754 45566666666766 77899999999888652 332 6778888888888 7889999999988
Q ss_pred c-CCCCCHHHHHHHHHHHHHc-C-----ChhHHHHHHHHHhccCCC
Q 004369 551 M-DFEPNEVIWSVFIAGCRRH-G-----NMELGFYAAEQLLKLKPK 589 (758)
Q Consensus 551 m-~~~p~~~~~~~ll~~~~~~-g-----~~~~a~~~~~~~~~~~p~ 589 (758)
. ...++...+..|...|..- | +.++|...++++.+.+..
T Consensus 155 A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 155 SSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 8 3334566777777777653 3 889999999999887643
No 128
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.50 E-value=7e-07 Score=77.39 Aligned_cols=116 Identities=11% Similarity=0.020 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHH
Q 004369 489 QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAG 566 (758)
Q Consensus 489 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~ 566 (758)
...+..+...+...|++++|...|+.+.+. .+.+...+..+...|...|++++|++.+++. ...| +...|..+...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 334455555555556666666666555431 1223455666666666666666666666665 3334 56677778888
Q ss_pred HHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCC
Q 004369 567 CRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGR 606 (758)
Q Consensus 567 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 606 (758)
+...|++++|...++++++.+|.+...+..++.++...|+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 8888888888888888888888888888888888876653
No 129
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.50 E-value=2.4e-07 Score=92.73 Aligned_cols=191 Identities=10% Similarity=-0.073 Sum_probs=128.1
Q ss_pred hHHHHhHHhhhHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHH
Q 004369 422 DVVVGTALVNMYKKCGRIERASRVFVEMS---TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPN-QVTFVGALA 497 (758)
Q Consensus 422 ~~~~~~~Li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~ 497 (758)
+...+..+...|.+.|++++|...|++.. ..+...|..+...|...|++++|+..+++..+. .|+ ...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 34556667777888888888888887754 346677888888888888888888888888763 454 567777777
Q ss_pred HHhccccHHHHHHHHHHhhhhcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHH
Q 004369 498 ACSNAGMVYEALGYFEMMQKEYKIKPVM-DHYMCLIDMFVRLGCIEEAFDFIKKMDFEPNEVIWSVFIAGCRRHGNMELG 576 (758)
Q Consensus 498 a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a 576 (758)
++...|++++|...|+.+.+. .|+. ..+...+....+.++..+... .......++..+...+. .+ ..|+.++|
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~-~l-~~~~~~~A 154 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLT-RL-IAAERERE 154 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHH-HH-HHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHH-HH-HHHHHHHH
Confidence 888888888888888877652 1211 011111222221111111111 22223333444444443 33 36889999
Q ss_pred HHHHHHHhccCCCCchhHHHHHHHhhhC-CCchhHHHHHHHhhhC
Q 004369 577 FYAAEQLLKLKPKDCESYAMLLDIFVSA-GRWEDVAVVKNLTREE 620 (758)
Q Consensus 577 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~ 620 (758)
.+.++++++++|++......+...+.+. +++++|.+++..+.+.
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999999999999888888888888777 7899999999988764
No 130
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.50 E-value=4.8e-05 Score=82.27 Aligned_cols=346 Identities=13% Similarity=0.036 Sum_probs=167.7
Q ss_pred CCcHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCC-hHHHHHHHccCC------CCCcchHHHHHHHHH----hCCCc
Q 004369 88 KSLSNAEIIHAHIVKTGSHQDFFVMTFLVNVYGKCGN-MEEAQKVFDNLP------RINVVSWTSLISGYV----QNSQP 156 (758)
Q Consensus 88 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~f~~~~------~~~~~~~~~li~~~~----~~g~~ 156 (758)
++.+.+..+|++.+.. .|++.+|...+..-.+.+. .+..+.+|+... ..+...|...+.-+. .+++.
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 6777788888777763 4577777777766655542 233444554322 123445666655432 23455
Q ss_pred hHHHHHHHHHHHcCCCCChhhHHHHHHHhcc---cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHhhcCChHHHHHHH
Q 004369 157 ELAIHVFLDMLEAGNYPTNVTLGTALTACSS---LESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGSLNSAIKAF 233 (758)
Q Consensus 157 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~---~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f 233 (758)
+.+..+|++.... |.. .+..+-..|.. ......+..+ +.-+ .+.+..|+.++
T Consensus 106 ~~vR~iy~rAL~~---P~~-~~~~lw~~Y~~fE~~~~~~~~~~~-------------------~~~~--~~~y~~ar~~y 160 (493)
T 2uy1_A 106 EKIRNGYMRALQT---PMG-SLSELWKDFENFELELNKITGKKI-------------------VGDT--LPIFQSSFQRY 160 (493)
T ss_dssp HHHHHHHHHHHTS---CCT-THHHHHHHHHHHHHHHCHHHHHHH-------------------HHHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC---hhh-hHHHHHHHHHHHHHHhccccHHHH-------------------HHHH--hHHHHHHHHHH
Confidence 6666677666652 211 11111111111 0011111111 1111 01222333333
Q ss_pred hccCC----CCcchHHHHHHHHhhCC--C-----hhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHHHHHHHHH
Q 004369 234 NRIRE----KNVMSWTTVIGACGENG--E-----AVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLG 302 (758)
Q Consensus 234 ~~~~~----~~~~~~~~li~~~~~~g--~-----~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 302 (758)
+.+.. .+...|...+.---.++ - .+.+..+|++++... +.+...|...+.-+...|+.+.|..+++..
T Consensus 161 ~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erA 239 (493)
T 2uy1_A 161 QQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERG 239 (493)
T ss_dssp HHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 22221 13335655554322221 1 234566777776642 334555666666666778888888888888
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCCHHHH-HHHHccCC--C----------CCeeechhHHHHHhhhchhhhchhhcCCCh
Q 004369 303 IKLGYASNLRVRNSIMYLYLKCGLVDEA-QKLFDGMS--H----------VNLVTWNAMIAGHAQMMDLAKDDLSAHNGG 369 (758)
Q Consensus 303 ~~~g~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~m~--~----------~~~~~~~~li~~~~~~~~~~~~~l~~~g~~ 369 (758)
+.. +.+...+.. |+...+.++. ..+.+... . .....|-..+.-..+ .+..
T Consensus 240 i~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r-----------~~~~ 302 (493)
T 2uy1_A 240 IEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLK-----------KRGL 302 (493)
T ss_dssp HHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHH-----------HHCH
T ss_pred HhC--CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHH-----------cCCH
Confidence 877 444433332 2222111111 11111100 0 001223333333333 5567
Q ss_pred hHHHHHHHHhHhCCCCCCHHHHHHHHHHHhc-ccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHh
Q 004369 370 TEALSIFSKLNSSGMKPDLYTFSSILTICSR-LVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVE 448 (758)
Q Consensus 370 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~-~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~ 448 (758)
+.|..+|.+. .. ...+...|......-.. .++.+.|+.+++...+.- +.+...+...++...+.|+.+.|..+|++
T Consensus 303 ~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er 379 (493)
T 2uy1_A 303 ELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKR 379 (493)
T ss_dssp HHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7777777777 21 11233333221111111 225777777777776642 22344455566666777777777777777
Q ss_pred cCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004369 449 MSTRTLISWTSMITGFANHSLSHQALQLFEDMLL 482 (758)
Q Consensus 449 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 482 (758)
+. +....|...+.--...|+.+.+..+++++..
T Consensus 380 ~~-k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 380 LE-KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp SC-CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 63 3455666666655666777666666666653
No 131
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.49 E-value=1.4e-05 Score=80.29 Aligned_cols=202 Identities=10% Similarity=-0.038 Sum_probs=139.2
Q ss_pred HHHhHhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHH---HHhHHhhhHHhcCCHHHHHHHHHhcCCC
Q 004369 376 FSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVV---VGTALVNMYKKCGRIERASRVFVEMSTR 452 (758)
Q Consensus 376 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~---~~~~Li~~y~~~g~~~~A~~~~~~~~~~ 452 (758)
+.++......|+..++..+...+.-.-+ .+.......+.. .+...+..+...|++++|...+++....
T Consensus 34 ~s~~e~g~~~~~~~~l~~i~~~l~~~~~---------~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~ 104 (293)
T 3u3w_A 34 VSRIESGAVYPSMDILQGIAAKLQIPII---------HFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKK 104 (293)
T ss_dssp HHHHHTTSCCCCHHHHHHHHHHHTCCTH---------HHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHCCCCCCCHHHHHHHHHHhCcCHH---------HHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcc
Confidence 3344333356777777666665543211 111111112222 2333467788999999999999886532
Q ss_pred ---Ch------hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHhccccHHHHHHHHHHhhhh
Q 004369 453 ---TL------ISWTSMITGFANHSLSHQALQLFEDMLLAGVR-PN----QVTFVGALAACSNAGMVYEALGYFEMMQKE 518 (758)
Q Consensus 453 ---~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 518 (758)
+. ..+..+...+...|++++|+..|++..+.... ++ ..+++.+..+|...|++++|..+|+.+.+.
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 184 (293)
T 3u3w_A 105 EEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQ 184 (293)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 11 13334666677788999999999999984322 22 236888999999999999999999998742
Q ss_pred c----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHc-------CCCCC-HHHHHHHHHHHHHcCC-hhHHHHHHHHHh
Q 004369 519 Y----KIKPV-MDHYMCLIDMFVRLGCIEEAFDFIKKM-------DFEPN-EVIWSVFIAGCRRHGN-MELGFYAAEQLL 584 (758)
Q Consensus 519 ~----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~-~~~~~~ll~~~~~~g~-~~~a~~~~~~~~ 584 (758)
. +..+. ...|..+...|.+.|++++|++.+++. +..+. ..+|..+...+...|+ +++|...+++++
T Consensus 185 ~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 185 LEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 1 22222 347889999999999999999999876 22222 5678999999999995 699999999987
Q ss_pred cc
Q 004369 585 KL 586 (758)
Q Consensus 585 ~~ 586 (758)
++
T Consensus 265 ~i 266 (293)
T 3u3w_A 265 FF 266 (293)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 132
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.47 E-value=9.9e-07 Score=90.70 Aligned_cols=143 Identities=15% Similarity=0.020 Sum_probs=107.4
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHH
Q 004369 453 TLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLI 532 (758)
Q Consensus 453 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 532 (758)
+...|..+...|.+.|++++|+..|++..+. .|+...+ ..+++.+.- . -....|..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~-----------~~~~~~~~~-~--------~~~~~~~nla 203 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSF-----------SNEEAQKAQ-A--------LRLASHLNLA 203 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCC-----------CSHHHHHHH-H--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccC-----------ChHHHHHHH-H--------HHHHHHHHHH
Confidence 3456777777777778888888888777763 2221100 001111100 0 0136788889
Q ss_pred HHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhH
Q 004369 533 DMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDV 610 (758)
Q Consensus 533 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 610 (758)
.+|.+.|++++|++.+++. ...| +...|..+..++...|++++|...++++++++|++..++..++.++...|++++|
T Consensus 204 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 204 MCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988 5556 6788999999999999999999999999999999999999999999999999998
Q ss_pred -HHHHHHh
Q 004369 611 -AVVKNLT 617 (758)
Q Consensus 611 -~~~~~~m 617 (758)
...++.|
T Consensus 284 ~~~~~~~~ 291 (336)
T 1p5q_A 284 EKKLYANM 291 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 4455555
No 133
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.47 E-value=5e-07 Score=80.42 Aligned_cols=105 Identities=11% Similarity=-0.058 Sum_probs=78.3
Q ss_pred CCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHH
Q 004369 485 VRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWS 561 (758)
Q Consensus 485 ~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~ 561 (758)
+.|+ ...+..+...+.+.|++++|...|+.+.+. -+.+...|..+..+|.+.|++++|++.|+++ .+.| +...|.
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~ 108 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF 108 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHH
Confidence 3454 335566666777788888888888877652 2234677778888888888888888888877 5556 567788
Q ss_pred HHHHHHHHcCChhHHHHHHHHHhccCCCCc
Q 004369 562 VFIAGCRRHGNMELGFYAAEQLLKLKPKDC 591 (758)
Q Consensus 562 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 591 (758)
.+..++...|++++|...+++++++.|+++
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 888888888888888888888888888753
No 134
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.46 E-value=6.3e-07 Score=90.99 Aligned_cols=197 Identities=9% Similarity=-0.040 Sum_probs=150.2
Q ss_pred cccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 004369 400 RLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQALQLFED 479 (758)
Q Consensus 400 ~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 479 (758)
..|++++|.+++....+..-. . .+...+++++|...|.+ ....|...|++++|+..|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHH
Confidence 357788888888877764211 1 12225889999988765 45678899999999999998
Q ss_pred HHHcCC---CC-C-HHHHHHHHHHHhccccHHHHHHHHHHhhhhc---CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004369 480 MLLAGV---RP-N-QVTFVGALAACSNAGMVYEALGYFEMMQKEY---KIKP-VMDHYMCLIDMFVRLGCIEEAFDFIKK 550 (758)
Q Consensus 480 m~~~g~---~p-~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~ 550 (758)
..+... .+ . ..+|..+...|...|++++|...|++..+.+ |-.. ...++..+...|.+ |++++|++.+++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 876311 11 1 4578888889999999999999999876532 2111 14678889999988 999999999988
Q ss_pred c-CCCC---C----HHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCc------hhHHHHHHHhhhCCCchhHHHHHHH
Q 004369 551 M-DFEP---N----EVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDC------ESYAMLLDIFVSAGRWEDVAVVKNL 616 (758)
Q Consensus 551 m-~~~p---~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~ 616 (758)
. .+.| + ..++..+...+...|++++|...+++++++.|++. ..+..++.+|...|++++|...++.
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7 2111 1 45788899999999999999999999999866543 3677788889999999999999998
Q ss_pred hh
Q 004369 617 TR 618 (758)
Q Consensus 617 m~ 618 (758)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 86
No 135
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.46 E-value=3.5e-05 Score=77.03 Aligned_cols=229 Identities=10% Similarity=0.033 Sum_probs=174.8
Q ss_pred CCChhHHHHHHHHhHhCCCCCCHH-HHHHHHHHHhccc--chHHHHHHHHHHHHcCCCChHHHHhHHhhhH----Hhc--
Q 004369 366 HNGGTEALSIFSKLNSSGMKPDLY-TFSSILTICSRLV--ALEQGEQIHALTLKTGFLSDVVVGTALVNMY----KKC-- 436 (758)
Q Consensus 366 ~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~~--~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y----~~~-- 436 (758)
....++|++++.+++.. .|+.. .++.--..+...+ +++++...++.++... +.+..+++.-...+ .+.
T Consensus 46 ~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 46 EEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccc
Confidence 55667999999999874 56444 4555555666777 9999999999998864 44555665444444 444
Q ss_pred -CCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCCHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccc------
Q 004369 437 -GRIERASRVFVEMS---TRTLISWTSMITGFANHSLSH--QALQLFEDMLLAGVRPNQVTFVGALAACSNAGM------ 504 (758)
Q Consensus 437 -g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~------ 504 (758)
++++++..+++++. .+|..+|+--.-.+.+.|.++ ++++.++++.+... -|...|..-.....+.+.
T Consensus 123 ~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhh
Confidence 78999999999877 557788988888888889888 99999999998643 245566655555666666
Q ss_pred HHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHc-CCC---C-CHHHHHHHHHHHHHcCChhHHHH
Q 004369 505 VYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEE-AFDFIKKM-DFE---P-NEVIWSVFIAGCRRHGNMELGFY 578 (758)
Q Consensus 505 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m-~~~---p-~~~~~~~ll~~~~~~g~~~~a~~ 578 (758)
+++++++++.+... .+-|...|+.+...+.+.|+..+ +.++.++. ... | +...+..+...+.+.|+.++|.+
T Consensus 202 ~~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 202 IDEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 89999999998863 34567888889999999998555 55677766 222 3 67889999999999999999999
Q ss_pred HHHHHhc-cCCCCchhHHHHHHH
Q 004369 579 AAEQLLK-LKPKDCESYAMLLDI 600 (758)
Q Consensus 579 ~~~~~~~-~~p~~~~~~~~l~~~ 600 (758)
+++.+.+ .+|.....+...++.
T Consensus 280 ~~~~l~~~~Dpir~~yW~~~~~~ 302 (306)
T 3dra_A 280 VYDLLKSKYNPIRSNFWDYQISK 302 (306)
T ss_dssp HHHHHHHTTCGGGHHHHHHHHHT
T ss_pred HHHHHHhccChHHHHHHHHHHhh
Confidence 9999996 799887777766543
No 136
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.43 E-value=9.6e-06 Score=81.53 Aligned_cols=163 Identities=9% Similarity=-0.091 Sum_probs=122.2
Q ss_pred HHHhHHhhhHHhcCCHHHHHHHHHhcCC---CCh------hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CC--H
Q 004369 424 VVGTALVNMYKKCGRIERASRVFVEMST---RTL------ISWTSMITGFANHSLSHQALQLFEDMLLAGVR---PN--Q 489 (758)
Q Consensus 424 ~~~~~Li~~y~~~g~~~~A~~~~~~~~~---~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---p~--~ 489 (758)
..+...+..|...|++++|.+.+++..+ ... ..+..+...+...|++++|+..+++..+.... +. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3445567788899999999999876432 111 23444566677889999999999998864221 22 3
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHhhh---hcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHc-CC------CC-C
Q 004369 490 VTFVGALAACSNAGMVYEALGYFEMMQK---EYKIKPV--MDHYMCLIDMFVRLGCIEEAFDFIKKM-DF------EP-N 556 (758)
Q Consensus 490 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~---~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~------~p-~ 556 (758)
.+++.+...|...|++++|..+|+++.+ ..+..+. ...|..+...|.+.|++++|++.+++. .+ .. -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 4788888999999999999999999873 2222221 258889999999999999999999886 11 11 1
Q ss_pred HHHHHHHHHHHHHcCChhHH-HHHHHHHhcc
Q 004369 557 EVIWSVFIAGCRRHGNMELG-FYAAEQLLKL 586 (758)
Q Consensus 557 ~~~~~~ll~~~~~~g~~~~a-~~~~~~~~~~ 586 (758)
..+|..+...+...|++++| ...+++++.+
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 56788999999999999999 7778888753
No 137
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.42 E-value=4.7e-07 Score=80.58 Aligned_cols=110 Identities=8% Similarity=-0.091 Sum_probs=84.9
Q ss_pred CCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHH
Q 004369 485 VRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWS 561 (758)
Q Consensus 485 ~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~ 561 (758)
+.|+ ...+..+...+...|++++|...|+.+.+. -+.+...|..+..+|.+.|++++|++.|++. ...| +...|.
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 93 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPF 93 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHH
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence 3444 345566666778888888888888887653 2335677788888888899999999888887 4555 567788
Q ss_pred HHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHH
Q 004369 562 VFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAM 596 (758)
Q Consensus 562 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 596 (758)
.+..++...|++++|...+++++++.|+++.....
T Consensus 94 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 128 (148)
T 2vgx_A 94 HAAECLLQXGELAEAESGLFLAQELIANXPEFXEL 128 (148)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHH
Confidence 89999999999999999999999999987765443
No 138
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.40 E-value=3.5e-06 Score=76.39 Aligned_cols=95 Identities=16% Similarity=0.082 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhh
Q 004369 525 MDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFV 602 (758)
Q Consensus 525 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 602 (758)
...+..+...+.+.|++++|++.|++. ...| +...|..+...+...|++++|+..++++++++|+++..|..++.+|.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 455666667777777777777777766 4444 56667777777777777777777777777777777777777777777
Q ss_pred hCCCchhHHHHHHHhhh
Q 004369 603 SAGRWEDVAVVKNLTRE 619 (758)
Q Consensus 603 ~~g~~~~a~~~~~~m~~ 619 (758)
..|++++|.+.++...+
T Consensus 91 ~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 77777777777777665
No 139
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.39 E-value=7.8e-07 Score=75.98 Aligned_cols=94 Identities=17% Similarity=0.053 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhC
Q 004369 527 HYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSA 604 (758)
Q Consensus 527 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 604 (758)
.+..+...+.+.|++++|+..+++. ...| +...|..+..++...|++++|+..++++++++|+++..+..|+.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3455677888999999999999988 5566 6788999999999999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHhhhC
Q 004369 605 GRWEDVAVVKNLTREE 620 (758)
Q Consensus 605 g~~~~a~~~~~~m~~~ 620 (758)
|++++|...++...+.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999988763
No 140
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.39 E-value=3.3e-06 Score=71.11 Aligned_cols=93 Identities=16% Similarity=0.229 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhC
Q 004369 527 HYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSA 604 (758)
Q Consensus 527 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 604 (758)
.+..+...+...|++++|.+.+++. ...| +...|..+...+...|++++|...++++++..|+++..+..++.+|...
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 3444455555555555555555554 2223 3444555555555555555555555555555555555555555555555
Q ss_pred CCchhHHHHHHHhhh
Q 004369 605 GRWEDVAVVKNLTRE 619 (758)
Q Consensus 605 g~~~~a~~~~~~m~~ 619 (758)
|++++|.+.++...+
T Consensus 86 ~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 86 NRFEEAKRTYEEGLK 100 (118)
T ss_dssp TCHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHH
Confidence 555555555555443
No 141
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.38 E-value=7.8e-07 Score=96.15 Aligned_cols=117 Identities=13% Similarity=0.082 Sum_probs=96.0
Q ss_pred HHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhH
Q 004369 498 ACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMEL 575 (758)
Q Consensus 498 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~ 575 (758)
.+.+.|++++|.+.|+++.+. -+.+...|..+..+|.+.|++++|++.+++. ...| +...|..+..++...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 456778888888888888763 2234778888999999999999999999888 5566 57789999999999999999
Q ss_pred HHHHHHHHhccCCCCchhHHHHHHH--hhhCCCchhHHHHHHH
Q 004369 576 GFYAAEQLLKLKPKDCESYAMLLDI--FVSAGRWEDVAVVKNL 616 (758)
Q Consensus 576 a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~~ 616 (758)
|+..++++++++|+++..+..++.+ +.+.|++++|.+.++.
T Consensus 93 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 93 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 9999999999999999999999888 8889999999998774
No 142
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.36 E-value=2.6e-06 Score=74.33 Aligned_cols=98 Identities=9% Similarity=-0.005 Sum_probs=84.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHH
Q 004369 523 PVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDI 600 (758)
Q Consensus 523 p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 600 (758)
.+...+..+...+...|++++|...|++. ...| +...|..+...+...|++++|...++++++++|+++..+..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 45677888888888999999999988887 4445 577888899999999999999999999999999999999999999
Q ss_pred hhhCCCchhHHHHHHHhhhC
Q 004369 601 FVSAGRWEDVAVVKNLTREE 620 (758)
Q Consensus 601 ~~~~g~~~~a~~~~~~m~~~ 620 (758)
|...|++++|...++...+.
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999888763
No 143
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.36 E-value=3.9e-06 Score=72.53 Aligned_cols=97 Identities=11% Similarity=0.091 Sum_probs=89.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHH
Q 004369 523 PVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDI 600 (758)
Q Consensus 523 p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 600 (758)
.+...+..+...+.+.|++++|.+.+++. ...| +..+|..+...+...|++++|...++++++..|+++..+..++.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 44678888999999999999999999998 6666 678899999999999999999999999999999999999999999
Q ss_pred hhhCCCchhHHHHHHHhhh
Q 004369 601 FVSAGRWEDVAVVKNLTRE 619 (758)
Q Consensus 601 ~~~~g~~~~a~~~~~~m~~ 619 (758)
|...|++++|.+.++...+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 9999999999999998876
No 144
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.35 E-value=5.4e-06 Score=69.70 Aligned_cols=110 Identities=15% Similarity=0.021 Sum_probs=79.3
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHH
Q 004369 490 VTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGC 567 (758)
Q Consensus 490 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~ 567 (758)
..+..+...+...|++++|...|+...+. .+.+...+..+...+.+.|++++|.+.+++. ...| +...|..+...+
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34455555666677777777777766552 2234566777777777888888888877776 3344 567788888888
Q ss_pred HHcCChhHHHHHHHHHhccCCCCchhHHHHHHHh
Q 004369 568 RRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIF 601 (758)
Q Consensus 568 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 601 (758)
...|++++|...++++++.+|+++..+..++.+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 8889999999999999998888887777776654
No 145
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.35 E-value=1.8e-06 Score=72.03 Aligned_cols=97 Identities=12% Similarity=0.160 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCC--CchhHHHHHHH
Q 004369 525 MDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPK--DCESYAMLLDI 600 (758)
Q Consensus 525 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~ 600 (758)
...+..+...+.+.|++++|...+++. ...| +...|..+...+...|++++|...++++++..|+ +...+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 445666777788888888888888876 3344 5677888888888899999999999999999988 88889999999
Q ss_pred hhhC-CCchhHHHHHHHhhhCC
Q 004369 601 FVSA-GRWEDVAVVKNLTREEK 621 (758)
Q Consensus 601 ~~~~-g~~~~a~~~~~~m~~~~ 621 (758)
|... |++++|.+.++...+..
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHhCCHHHHHHHHHHHhhcc
Confidence 9999 99999999888887644
No 146
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.34 E-value=1.4e-06 Score=75.05 Aligned_cols=94 Identities=10% Similarity=-0.036 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCch-------hHHH
Q 004369 526 DHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCE-------SYAM 596 (758)
Q Consensus 526 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~ 596 (758)
..+..+...+.+.|++++|++.|++. .+.| +...|..+..++...|++++|+..++++++++|++.. +|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 45677888999999999999999987 6666 5778999999999999999999999999999887643 6778
Q ss_pred HHHHhhhCCCchhHHHHHHHhhh
Q 004369 597 LLDIFVSAGRWEDVAVVKNLTRE 619 (758)
Q Consensus 597 l~~~~~~~g~~~~a~~~~~~m~~ 619 (758)
++.+|...|++++|.+.++...+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 88999999999999999988765
No 147
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.34 E-value=4.5e-06 Score=78.46 Aligned_cols=152 Identities=10% Similarity=-0.033 Sum_probs=80.6
Q ss_pred hcCCHHHHHH---HHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHhccccHH
Q 004369 435 KCGRIERASR---VFVEMSTRTLISWTSMITGFANHSLSHQALQLFEDMLLA----GVRPN-QVTFVGALAACSNAGMVY 506 (758)
Q Consensus 435 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~ 506 (758)
..|++++|.+ .+..-+......+..+...+...|++++|+..+++..+. +..|. ..++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3566666666 444333334456666666777777777777777666541 11111 334555555666666777
Q ss_pred HHHHHHHHhhhh---cCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHc----CCCCC----HHHHHHHHHHHHHcCCh
Q 004369 507 EALGYFEMMQKE---YKIKP--VMDHYMCLIDMFVRLGCIEEAFDFIKKM----DFEPN----EVIWSVFIAGCRRHGNM 573 (758)
Q Consensus 507 ~a~~~~~~~~~~---~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~ 573 (758)
+|...+++..+. .+..| ....+..+...+...|++++|.+.+++. ...++ ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 766666665442 11111 1234555666666666666666666554 00111 12245555556666666
Q ss_pred hHHHHHHHHHhcc
Q 004369 574 ELGFYAAEQLLKL 586 (758)
Q Consensus 574 ~~a~~~~~~~~~~ 586 (758)
++|...+++++++
T Consensus 164 ~~A~~~~~~al~~ 176 (203)
T 3gw4_A 164 LEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666555543
No 148
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.33 E-value=1.5e-05 Score=77.89 Aligned_cols=180 Identities=9% Similarity=-0.039 Sum_probs=122.6
Q ss_pred hcCCHHHHHHHHHhcC---CCChhHHHHH-------HHHHHhcCCHHHHHHHHHHHHHcCCCCCH---------------
Q 004369 435 KCGRIERASRVFVEMS---TRTLISWTSM-------ITGFANHSLSHQALQLFEDMLLAGVRPNQ--------------- 489 (758)
Q Consensus 435 ~~g~~~~A~~~~~~~~---~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--------------- 489 (758)
..++.+.|.+.|.+.. ......|+.+ ...+...++..+++..+++-.. +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 4678888888888766 2344677777 4555555555555555554443 33321
Q ss_pred -------HHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCH----H
Q 004369 490 -------VTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKMDFEPNE----V 558 (758)
Q Consensus 490 -------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~----~ 558 (758)
.....+...+...|++++|.+.|+.+.. ..|+......+...+.+.|++++|+..|++....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 1223344567778888888888887754 2354335556667888888888888888877333332 3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhccC--CC-CchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369 559 IWSVFIAGCRRHGNMELGFYAAEQLLKLK--PK-DCESYAMLLDIFVSAGRWEDVAVVKNLTRE 619 (758)
Q Consensus 559 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 619 (758)
++..|..++...|++++|+..++++.... |. .+.....++.++.+.|+.++|...++.+..
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a 236 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT 236 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 67778888888888888888888887543 44 445777888888888888888888888876
No 149
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.33 E-value=2.5e-06 Score=78.43 Aligned_cols=127 Identities=10% Similarity=0.058 Sum_probs=93.6
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHH-HHHcCCH--
Q 004369 465 ANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDM-FVRLGCI-- 541 (758)
Q Consensus 465 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~~-- 541 (758)
...|++++|+..+++..+.. +.+...+..+...+...|++++|...|+.+.+.. +.+...+..+..+ |...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcch
Confidence 34567777888887777642 2345677777778888888888888888877632 2345677777777 7788888
Q ss_pred HHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhH
Q 004369 542 EEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESY 594 (758)
Q Consensus 542 ~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 594 (758)
++|...++++ ...| +...|..+...+...|++++|...++++++..|+++...
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 8999888887 4455 567788888999999999999999999999999876544
No 150
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.32 E-value=2.6e-06 Score=77.01 Aligned_cols=93 Identities=10% Similarity=0.006 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHc-CC------------------CC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhcc
Q 004369 527 HYMCLIDMFVRLGCIEEAFDFIKKM-DF------------------EP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKL 586 (758)
Q Consensus 527 ~~~~li~~~~~~g~~~~A~~~~~~m-~~------------------~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 586 (758)
.+......+.+.|++++|++.|++. .. .| +...|..+..++.+.|++++|+..+++++++
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 3444445555555555555555544 11 22 2456888888888899999999999999999
Q ss_pred CCCCchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369 587 KPKDCESYAMLLDIFVSAGRWEDVAVVKNLTRE 619 (758)
Q Consensus 587 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 619 (758)
+|+++..|..++.+|...|++++|...++...+
T Consensus 93 ~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 93 EETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 999989999999999999999999988888775
No 151
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.32 E-value=4.9e-06 Score=81.22 Aligned_cols=139 Identities=14% Similarity=-0.015 Sum_probs=104.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCC--HHHHHHHHHH
Q 004369 457 WTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPV--MDHYMCLIDM 534 (758)
Q Consensus 457 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~ 534 (758)
+-.+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+...+. . .|. ...+..+..+
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHH
Confidence 344566777888888888888887663 465545555555788899999999999865431 1 221 3467778899
Q ss_pred HHHcCCHHHHHHHHHHc--C-CCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHH
Q 004369 535 FVRLGCIEEAFDFIKKM--D-FEPN--EVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDI 600 (758)
Q Consensus 535 ~~~~g~~~~A~~~~~~m--~-~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 600 (758)
+.+.|++++|+..|++. + ..|. ...+..+..++.+.|+.++|...+++++..+|+ +.+...|.+.
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~~ 250 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKDP 250 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHCT
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhCC
Confidence 99999999999999988 2 2253 346778888899999999999999999999998 7777777544
No 152
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.32 E-value=8.5e-06 Score=69.23 Aligned_cols=95 Identities=17% Similarity=0.366 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhh
Q 004369 525 MDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFV 602 (758)
Q Consensus 525 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 602 (758)
...+..+...+.+.|++++|.+.++++ ...| +..+|..+...+...|++++|...++++++..|+++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 567888999999999999999999998 3344 67789999999999999999999999999999999999999999999
Q ss_pred hCCCchhHHHHHHHhhh
Q 004369 603 SAGRWEDVAVVKNLTRE 619 (758)
Q Consensus 603 ~~g~~~~a~~~~~~m~~ 619 (758)
..|++++|...++.+.+
T Consensus 89 ~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHH
Confidence 99999999999999876
No 153
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.31 E-value=4.1e-06 Score=71.96 Aligned_cols=109 Identities=9% Similarity=-0.083 Sum_probs=79.3
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHH
Q 004369 491 TFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCR 568 (758)
Q Consensus 491 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~ 568 (758)
.+..+...+.+.|++++|...|+...+. .+.+...|..+..+|.+.|++++|++.+++. ...| +...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 4455555666777777777777776652 2234567777788888888888888888776 4455 5667888888888
Q ss_pred HcCChhHHHHHHHHHhccC------CCCchhHHHHHHHh
Q 004369 569 RHGNMELGFYAAEQLLKLK------PKDCESYAMLLDIF 601 (758)
Q Consensus 569 ~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~ 601 (758)
..|++++|...++++++++ |.++.....+..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 8888889998888888888 77777766665554
No 154
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.30 E-value=4.8e-06 Score=71.52 Aligned_cols=96 Identities=16% Similarity=0.176 Sum_probs=87.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHh
Q 004369 524 VMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIF 601 (758)
Q Consensus 524 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 601 (758)
+...+..+...+...|++++|.+.+++. ...| +...|..+...+...|++++|...++++++..|+++..+..++.+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 4567788899999999999999999988 4445 6788999999999999999999999999999999999999999999
Q ss_pred hhCCCchhHHHHHHHhhh
Q 004369 602 VSAGRWEDVAVVKNLTRE 619 (758)
Q Consensus 602 ~~~g~~~~a~~~~~~m~~ 619 (758)
...|++++|.+.++...+
T Consensus 91 ~~~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALE 108 (131)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHh
Confidence 999999999999999876
No 155
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.30 E-value=3.6e-06 Score=79.06 Aligned_cols=168 Identities=7% Similarity=-0.049 Sum_probs=106.2
Q ss_pred hhhHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHH
Q 004369 430 VNMYKKCGRIERASRVFVEMSTR---TLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVY 506 (758)
Q Consensus 430 i~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 506 (758)
+......|++++|.+.++..... ....|..+...+...|++++|+..|++..+. .|+...+... ...
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~--------~~~ 80 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ--------ILL 80 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------HHH
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------hHH
Confidence 33444556666666666543321 3346777777788888888888888887773 2221100000 000
Q ss_pred HHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHh
Q 004369 507 EALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLL 584 (758)
Q Consensus 507 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 584 (758)
.-. .. .....|..+..+|.+.|++++|+..+++. ...| +...|..+..++...|++++|...+++++
T Consensus 81 ~~~---~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 149 (198)
T 2fbn_A 81 DKK---KN--------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAA 149 (198)
T ss_dssp HHH---HH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHH---HH--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 000 00 01356777888899999999999999887 4455 67788999999999999999999999999
Q ss_pred ccCCCCchhHHHHHHHhhhCCCchhHH-HHHHHhh
Q 004369 585 KLKPKDCESYAMLLDIFVSAGRWEDVA-VVKNLTR 618 (758)
Q Consensus 585 ~~~p~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~ 618 (758)
+++|+++..+..++.++...|+.+++. ..++.|-
T Consensus 150 ~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 150 SLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp HHSTTCHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999888877776 4444443
No 156
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.29 E-value=2.6e-06 Score=75.12 Aligned_cols=108 Identities=11% Similarity=-0.091 Sum_probs=81.2
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHH
Q 004369 491 TFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCR 568 (758)
Q Consensus 491 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~ 568 (758)
.+..+...+.+.|++++|...|+.+.+. -+.+...|..+..+|.+.|++++|+..|++. ...| +...|..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 4445555677778888888888877653 2235667777888888888888888888887 4455 5667888888899
Q ss_pred HcCChhHHHHHHHHHhccCCCCchhHHHHHHH
Q 004369 569 RHGNMELGFYAAEQLLKLKPKDCESYAMLLDI 600 (758)
Q Consensus 569 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 600 (758)
..|++++|...+++++++.|+++........+
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 99999999999999999988887665554333
No 157
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.29 E-value=6.4e-06 Score=88.96 Aligned_cols=88 Identities=16% Similarity=0.095 Sum_probs=46.2
Q ss_pred HHhhhHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccc
Q 004369 428 ALVNMYKKCGRIERASRVFVEMS---TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPN-QVTFVGALAACSNAG 503 (758)
Q Consensus 428 ~Li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g 503 (758)
.+...|.+.|++++|.+.|++.. ..+...|..+..+|.+.|++++|++.+++..+. .|+ ...+..+..++.+.|
T Consensus 11 ~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 11 TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALG 88 (477)
T ss_dssp SSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC
Confidence 34445555566666666655543 223455555555555555555555555555553 232 344444555555555
Q ss_pred cHHHHHHHHHHhhh
Q 004369 504 MVYEALGYFEMMQK 517 (758)
Q Consensus 504 ~~~~a~~~~~~~~~ 517 (758)
++++|.+.|+++.+
T Consensus 89 ~~~eA~~~~~~al~ 102 (477)
T 1wao_1 89 KFRAALRDYETVVK 102 (477)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555555544
No 158
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.29 E-value=9.5e-06 Score=71.62 Aligned_cols=109 Identities=11% Similarity=0.007 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHH
Q 004369 489 QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPV----MDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSV 562 (758)
Q Consensus 489 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ 562 (758)
...+..+...+...|++++|...|+...+ ..|+ ...+..+...|...|++++|++.+++. ...| +...|..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 33444444455555555555555555533 2233 344444555555555555555555444 2223 3344445
Q ss_pred HHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHH
Q 004369 563 FIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDI 600 (758)
Q Consensus 563 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 600 (758)
+...+...|++++|...++++++++|++...+..+..+
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 55555555555555555555555555554444444433
No 159
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.27 E-value=5.6e-06 Score=74.97 Aligned_cols=109 Identities=9% Similarity=-0.093 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHH
Q 004369 489 QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAG 566 (758)
Q Consensus 489 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~ 566 (758)
...+..+...+.+.|++++|...|+...+. .+.+...|..+..+|.+.|++++|++.+++. ...| +...|..+...
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 445666666777788888888888777653 1235677888888888899999999888887 5556 57789999999
Q ss_pred HHHcCChhHHHHHHHHHhccCCCCchhHHHHHH
Q 004369 567 CRRHGNMELGFYAAEQLLKLKPKDCESYAMLLD 599 (758)
Q Consensus 567 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 599 (758)
+...|++++|...++++++++|+++..+...+-
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 999999999999999999999999886655443
No 160
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.27 E-value=1.3e-05 Score=75.27 Aligned_cols=154 Identities=10% Similarity=-0.081 Sum_probs=115.8
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhc---CCCC-CHHHHHHHHHHHHHcCC
Q 004369 465 ANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEY---KIKP-VMDHYMCLIDMFVRLGC 540 (758)
Q Consensus 465 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~~~~~li~~~~~~g~ 540 (758)
...|++++|.++++.+... ......++..+...+...|++++|...+++..+.. +..| ....+..+...|...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 4579999999966555431 22346678888889999999999999999887621 2222 24678889999999999
Q ss_pred HHHHHHHHHHc-CC---CC-C----HHHHHHHHHHHHHcCChhHHHHHHHHHhccCC--CCc----hhHHHHHHHhhhCC
Q 004369 541 IEEAFDFIKKM-DF---EP-N----EVIWSVFIAGCRRHGNMELGFYAAEQLLKLKP--KDC----ESYAMLLDIFVSAG 605 (758)
Q Consensus 541 ~~~A~~~~~~m-~~---~p-~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p--~~~----~~~~~l~~~~~~~g 605 (758)
+++|.+.+++. .. .+ + ..++..+...+...|++++|...+++++++.+ .++ ..+..++.+|...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 99999999886 11 22 2 34578888999999999999999999987532 222 24678999999999
Q ss_pred CchhHHHHHHHhhh
Q 004369 606 RWEDVAVVKNLTRE 619 (758)
Q Consensus 606 ~~~~a~~~~~~m~~ 619 (758)
++++|.+.++...+
T Consensus 162 ~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 162 NLLEAQQHWLRARD 175 (203)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999888765
No 161
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.27 E-value=1.3e-05 Score=70.80 Aligned_cols=95 Identities=9% Similarity=-0.054 Sum_probs=47.5
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHH
Q 004369 453 TLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPN----QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHY 528 (758)
Q Consensus 453 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 528 (758)
+...|..+...+...|++++|+..|++..+ ..|+ ...+..+..++...|++++|...++...+. .+.+...+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~ 102 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG--LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--DGGDVKAL 102 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TSCCHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CccCHHHH
Confidence 334455555555555555555555555554 2333 334444444555555555555555555432 11234444
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHc
Q 004369 529 MCLIDMFVRLGCIEEAFDFIKKM 551 (758)
Q Consensus 529 ~~li~~~~~~g~~~~A~~~~~~m 551 (758)
..+..+|...|++++|.+.+++.
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~a 125 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRC 125 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555555555555555555554
No 162
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.23 E-value=6.7e-05 Score=75.77 Aligned_cols=232 Identities=13% Similarity=0.081 Sum_probs=159.5
Q ss_pred CCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcC-CHHHHHH
Q 004369 366 HNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCG-RIERASR 444 (758)
Q Consensus 366 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g-~~~~A~~ 444 (758)
..++.++...++.+...+. .-++|.++.+.++... +.+..+++.--..+...| .++++++
T Consensus 50 ~~~y~~~~~~~r~~~~~~e------------------~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~ 110 (349)
T 3q7a_A 50 SEEYKDAMDYFRAIAAKEE------------------KSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELR 110 (349)
T ss_dssp CHHHHHHHHHHHHHHHTTC------------------CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCC------------------CCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHH
Confidence 3445556666666555432 2345666666666654 345566776666666777 5899999
Q ss_pred HHHhcC---CCChhHHHHHHHHHHhc-C-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHH--------HHHHH
Q 004369 445 VFVEMS---TRTLISWTSMITGFANH-S-LSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVY--------EALGY 511 (758)
Q Consensus 445 ~~~~~~---~~~~~~~~~li~~~~~~-g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~--------~a~~~ 511 (758)
+++.+. .++..+|+.-...+... + ++++++++++++.+.. .-|...|..-...+.+.|.++ +++++
T Consensus 111 ~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~ 189 (349)
T 3q7a_A 111 LMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDW 189 (349)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHH
Confidence 998876 44667888777777666 6 8899999999998753 224556666555566666555 88899
Q ss_pred HHHhhhhcCCCCCHHHHHHHHHHHHHcCC-------HHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCCh---------
Q 004369 512 FEMMQKEYKIKPVMDHYMCLIDMFVRLGC-------IEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNM--------- 573 (758)
Q Consensus 512 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~-------~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~--------- 573 (758)
++.+.+. -.-+...|+....++.+.++ ++++++.++++ ...| |...|+.+-..+.+.|+.
T Consensus 190 ~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~ 267 (349)
T 3q7a_A 190 CNEMLRV--DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAIL 267 (349)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHG
T ss_pred HHHHHHh--CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCccccccccc
Confidence 9888873 23456778877778877776 78999998887 5566 788898888888777654
Q ss_pred -----------hHHHHHHHHHhccC------CCCchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369 574 -----------ELGFYAAEQLLKLK------PKDCESYAMLLDIFVSAGRWEDVAVVKNLTRE 619 (758)
Q Consensus 574 -----------~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 619 (758)
.........++... +..+.+...|+++|...|+.++|.++++.+.+
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 268 PYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp GGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 22233333333322 45667888999999999999999999999864
No 163
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.20 E-value=2.1e-06 Score=80.73 Aligned_cols=117 Identities=13% Similarity=-0.009 Sum_probs=88.3
Q ss_pred ccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-C----------------HHHHHH
Q 004369 501 NAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-N----------------EVIWSV 562 (758)
Q Consensus 501 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~----------------~~~~~~ 562 (758)
..|.++++.+.++..... .......+..+...+.+.|++++|++.|++. ...| + ..+|..
T Consensus 16 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (198)
T 2fbn_A 16 NLYFQGAKKSIYDYTDEE--KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLN 93 (198)
T ss_dssp ------CCCSGGGCCHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccCchhhCCHHH--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHH
Confidence 345555555555432221 1112455667788888889999999888877 3333 2 267889
Q ss_pred HHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369 563 FIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTRE 619 (758)
Q Consensus 563 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 619 (758)
+..++...|++++|+..++++++++|+++..+..++.+|...|++++|.+.++...+
T Consensus 94 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 94 LATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998876
No 164
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.19 E-value=2.5e-05 Score=70.39 Aligned_cols=127 Identities=11% Similarity=0.064 Sum_probs=73.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHH
Q 004369 456 SWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMF 535 (758)
Q Consensus 456 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 535 (758)
.|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...++...+. .+.+...+..+...+
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHH
Confidence 45555556666666666666666665531 223455555666666666666666666666552 123355666666667
Q ss_pred HHcCCHHHHHHHHHHc-CCCC-CHHHHHHH--HHHHHHcCChhHHHHHHHHHhc
Q 004369 536 VRLGCIEEAFDFIKKM-DFEP-NEVIWSVF--IAGCRRHGNMELGFYAAEQLLK 585 (758)
Q Consensus 536 ~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l--l~~~~~~g~~~~a~~~~~~~~~ 585 (758)
.+.|++++|.+.++++ ...| +...+..+ +..+...|++++|...+++..+
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 7777777777766665 3333 33344332 3335556677777776666543
No 165
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.19 E-value=5.6e-06 Score=72.86 Aligned_cols=92 Identities=9% Similarity=0.016 Sum_probs=72.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHc-CCCCC-------------HHHHHHHHHHHHHcCChhHHHHHHHHHhcc-------
Q 004369 528 YMCLIDMFVRLGCIEEAFDFIKKM-DFEPN-------------EVIWSVFIAGCRRHGNMELGFYAAEQLLKL------- 586 (758)
Q Consensus 528 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------- 586 (758)
+......+.+.|++++|++.|++. .+.|+ ...|..+..++...|++++|+..+++++++
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 344555566667777777766665 22232 237888888889999999999999999888
Q ss_pred CCCCchhH----HHHHHHhhhCCCchhHHHHHHHhhh
Q 004369 587 KPKDCESY----AMLLDIFVSAGRWEDVAVVKNLTRE 619 (758)
Q Consensus 587 ~p~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~ 619 (758)
+|++...| ..++.++...|++++|...+++..+
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99998888 9999999999999999999988866
No 166
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.18 E-value=7.2e-06 Score=70.55 Aligned_cols=89 Identities=11% Similarity=0.030 Sum_probs=60.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHc-CCCCCH----HHHHHHHHHHHHcCChhHHHHHHHHHhccCCCC---chhHHHHHHHhh
Q 004369 531 LIDMFVRLGCIEEAFDFIKKM-DFEPNE----VIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKD---CESYAMLLDIFV 602 (758)
Q Consensus 531 li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~ 602 (758)
+...+.+.|++++|.+.|++. ...|+. ..|..+...+...|++++|...++++++..|++ +..+..++.+|.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 455566677777777777665 223322 356666677777777777777777777777776 566777777777
Q ss_pred hCCCchhHHHHHHHhhh
Q 004369 603 SAGRWEDVAVVKNLTRE 619 (758)
Q Consensus 603 ~~g~~~~a~~~~~~m~~ 619 (758)
..|++++|...++.+.+
T Consensus 88 ~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 77777777777776665
No 167
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.15 E-value=1.3e-05 Score=68.85 Aligned_cols=95 Identities=13% Similarity=0.112 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCC-------chhHH
Q 004369 525 MDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKD-------CESYA 595 (758)
Q Consensus 525 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~ 595 (758)
...+..+...+...|++++|...+++. ...| +...|..+...+...|++++|...++++++..|++ +..+.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 356777888888899999999988887 3344 67778888999999999999999999999988766 77899
Q ss_pred HHHHHhhhCCCchhHHHHHHHhhh
Q 004369 596 MLLDIFVSAGRWEDVAVVKNLTRE 619 (758)
Q Consensus 596 ~l~~~~~~~g~~~~a~~~~~~m~~ 619 (758)
.++.+|...|++++|.+.++...+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH
Confidence 999999999999999999998876
No 168
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.15 E-value=8.9e-06 Score=70.84 Aligned_cols=100 Identities=7% Similarity=-0.055 Sum_probs=70.6
Q ss_pred CHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHH
Q 004369 488 NQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIA 565 (758)
Q Consensus 488 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~ 565 (758)
+...+..+...+...|++++|...|+...+. .+.+...|..+..+|...|++++|...+++. ...| +...|..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 3555666666667777777777777766552 1233566777777777777777777777776 4444 5667788888
Q ss_pred HHHHcCChhHHHHHHHHHhccCCC
Q 004369 566 GCRRHGNMELGFYAAEQLLKLKPK 589 (758)
Q Consensus 566 ~~~~~g~~~~a~~~~~~~~~~~p~ 589 (758)
.+...|++++|...+++++++.|+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 888888888888888888887776
No 169
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.13 E-value=1.4e-05 Score=85.77 Aligned_cols=161 Identities=11% Similarity=0.011 Sum_probs=111.3
Q ss_pred CCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHH
Q 004369 437 GRIERASRVFVEMST---RTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFE 513 (758)
Q Consensus 437 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 513 (758)
+++++|...|+.... .....|..+...|.+.|++++|+..|++..+. .|+...+ . -++..+ ..
T Consensus 248 ~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~----------~-~~~~~~-~~ 313 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL----------S-EKESKA-SE 313 (457)
T ss_dssp EEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC----------C-HHHHHH-HH
T ss_pred hhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC----------C-hHHHHH-HH
Confidence 344445444443321 23456777888888888888888888888763 2221100 0 011110 00
Q ss_pred HhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCc
Q 004369 514 MMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDC 591 (758)
Q Consensus 514 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 591 (758)
. -....|..+..+|.+.|++++|+..++++ ...| +...|..+..++...|++++|...++++++++|++.
T Consensus 314 ~--------~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~ 385 (457)
T 1kt0_A 314 S--------FLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK 385 (457)
T ss_dssp H--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----
T ss_pred H--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence 0 11367888899999999999999999988 5556 678899999999999999999999999999999999
Q ss_pred hhHHHHHHHhhhCCCchhHHH-HHHHhhh
Q 004369 592 ESYAMLLDIFVSAGRWEDVAV-VKNLTRE 619 (758)
Q Consensus 592 ~~~~~l~~~~~~~g~~~~a~~-~~~~m~~ 619 (758)
.++..++.++...|+++++.+ .++.|-.
T Consensus 386 ~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 386 AARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999988774 4455543
No 170
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.13 E-value=1.6e-05 Score=81.69 Aligned_cols=126 Identities=11% Similarity=0.015 Sum_probs=73.6
Q ss_pred hHHHHhHHhhhHHhcCCHHHHHHHHHhcC--CC-C---------------hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004369 422 DVVVGTALVNMYKKCGRIERASRVFVEMS--TR-T---------------LISWTSMITGFANHSLSHQALQLFEDMLLA 483 (758)
Q Consensus 422 ~~~~~~~Li~~y~~~g~~~~A~~~~~~~~--~~-~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 483 (758)
+...+..+...|.+.|++++|...|++.. .+ + ...|..+..+|.+.|++++|+..|++.++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 56788899999999999999999998865 22 2 234444444444445555555444444442
Q ss_pred CCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHH
Q 004369 484 GVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWS 561 (758)
Q Consensus 484 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~ 561 (758)
.| .+...|..+..+|...|++++|+..|+++ .+.| +..++.
T Consensus 226 --~p-----------------------------------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~ 268 (336)
T 1p5q_A 226 --DS-----------------------------------NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKT 268 (336)
T ss_dssp --CT-----------------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHH
T ss_pred --CC-----------------------------------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 22 23444555555555555555555555555 3334 345555
Q ss_pred HHHHHHHHcCChhHH-HHHHHHHh
Q 004369 562 VFIAGCRRHGNMELG-FYAAEQLL 584 (758)
Q Consensus 562 ~ll~~~~~~g~~~~a-~~~~~~~~ 584 (758)
.+...+...|+.++| ...+++++
T Consensus 269 ~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 269 QLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666655 33444443
No 171
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.12 E-value=0.00025 Score=71.31 Aligned_cols=178 Identities=8% Similarity=0.061 Sum_probs=121.0
Q ss_pred HHHHHHHHHhcC---CCChhHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccc-HHHHHHHH
Q 004369 439 IERASRVFVEMS---TRTLISWTSMITGFANHS--LSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGM-VYEALGYF 512 (758)
Q Consensus 439 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a~~~~ 512 (758)
++++..+++.+. .++..+|+.-.-.+...| .+++++++++++.+.. +-|...|+.-..++.+.|. ++++++++
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 566777776655 456677877777777777 4788888888888753 2245566655556666676 58888888
Q ss_pred HHhhhhcCCCCCHHHHHHHHHHHHHc--------------CCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHc------
Q 004369 513 EMMQKEYKIKPVMDHYMCLIDMFVRL--------------GCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRH------ 570 (758)
Q Consensus 513 ~~~~~~~~~~p~~~~~~~li~~~~~~--------------g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~------ 570 (758)
+.+.+. -+-|...|+....++.+. +.++++++.+++. ...| |...|+-+-..+...
T Consensus 169 ~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHH--CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHH--CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence 888763 234556666666665554 4578888888877 5556 677787666665554
Q ss_pred -----CChhHHHHHHHHHhccCCCCchhHHHHHHHh---hhCCCchhHHHHHHHhhh
Q 004369 571 -----GNMELGFYAAEQLLKLKPKDCESYAMLLDIF---VSAGRWEDVAVVKNLTRE 619 (758)
Q Consensus 571 -----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~---~~~g~~~~a~~~~~~m~~ 619 (758)
+.++++++.++++++++|++.-.+..++... ...|..++....+.++.+
T Consensus 247 ~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 3578888899999999998865554444322 245667777777777765
No 172
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.07 E-value=2.7e-06 Score=72.09 Aligned_cols=81 Identities=12% Similarity=0.031 Sum_probs=40.7
Q ss_pred CCHHHHHHHHHHc-CC---CC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHH
Q 004369 539 GCIEEAFDFIKKM-DF---EP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVV 613 (758)
Q Consensus 539 g~~~~A~~~~~~m-~~---~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 613 (758)
|++++|+..|++. .. .| +...|..+...+...|++++|...++++++++|+++..+..++.+|...|++++|...
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 83 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVEL 83 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHH
Confidence 4444555555444 32 13 2334555555555555555555555555555555555555555555555555555555
Q ss_pred HHHhhh
Q 004369 614 KNLTRE 619 (758)
Q Consensus 614 ~~~m~~ 619 (758)
++...+
T Consensus 84 ~~~al~ 89 (117)
T 3k9i_A 84 LLKIIA 89 (117)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 173
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.07 E-value=1.4e-05 Score=68.04 Aligned_cols=97 Identities=10% Similarity=-0.011 Sum_probs=67.8
Q ss_pred HHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHc
Q 004369 493 VGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRH 570 (758)
Q Consensus 493 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~ 570 (758)
..+...+.+.|++++|...|+.+.+. -+.+...|..+..++.+.|++++|+..+++. ...| +...|..+...+...
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 34445666777888888887777653 2234667777788888888888888888777 5556 566788888888888
Q ss_pred CChhHHHHHHHHHhccCCCCc
Q 004369 571 GNMELGFYAAEQLLKLKPKDC 591 (758)
Q Consensus 571 g~~~~a~~~~~~~~~~~p~~~ 591 (758)
|++++|...++++++.+|+++
T Consensus 99 g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHC------
T ss_pred CCHHHHHHHHHHHHHhCcCCC
Confidence 888888888888888888753
No 174
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.07 E-value=1.9e-05 Score=65.56 Aligned_cols=99 Identities=15% Similarity=0.067 Sum_probs=70.3
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC---CHHHHHHHHHH
Q 004369 491 TFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP---NEVIWSVFIAG 566 (758)
Q Consensus 491 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~~~~~~ll~~ 566 (758)
.+..+...+...|++++|...|+.+.+. .+.+...+..+...|.+.|++++|.+.+++. ...| +...|..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 4445555666667777777777766552 2234566777777788888888888887776 3344 46678888888
Q ss_pred HHHc-CChhHHHHHHHHHhccCCCCc
Q 004369 567 CRRH-GNMELGFYAAEQLLKLKPKDC 591 (758)
Q Consensus 567 ~~~~-g~~~~a~~~~~~~~~~~p~~~ 591 (758)
+... |++++|.+.++++++..|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 8888 888888888888888888754
No 175
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.05 E-value=1.4e-05 Score=68.63 Aligned_cols=108 Identities=6% Similarity=-0.075 Sum_probs=59.3
Q ss_pred HHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CC----CCC----HHHHHH
Q 004369 492 FVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DF----EPN----EVIWSV 562 (758)
Q Consensus 492 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~----~p~----~~~~~~ 562 (758)
+..+...+...|++++|..+|+.+.+. .+.+...+..+...|...|++++|...++++ .. .++ ..+|..
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 333444444455555555555554432 1223444555555555556666665555554 11 112 455666
Q ss_pred HHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhh
Q 004369 563 FIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFV 602 (758)
Q Consensus 563 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 602 (758)
+...+...|++++|...++++++..| ++.....+..++.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 77777777777777777777777776 4555555554443
No 176
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.05 E-value=0.00089 Score=67.25 Aligned_cols=229 Identities=10% Similarity=0.073 Sum_probs=161.0
Q ss_pred CCChhHHHHHHHHhHhCCCCCCHHH-HHHHHHHHhcccc----------hHHHHHHHHHHHHcCCCChHHHHhHHhhhHH
Q 004369 366 HNGGTEALSIFSKLNSSGMKPDLYT-FSSILTICSRLVA----------LEQGEQIHALTLKTGFLSDVVVGTALVNMYK 434 (758)
Q Consensus 366 ~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~~~----------~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~ 434 (758)
....++|++++..+... .|+..| ++.--..+...+. ++++..++..+.... +-+..+|+.-...+.
T Consensus 43 ~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 43 GELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLS 119 (331)
T ss_dssp TCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHh
Confidence 33445899999999875 565443 2222222222222 567778888887764 557778887777777
Q ss_pred hcC--CHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc------
Q 004369 435 KCG--RIERASRVFVEMS---TRTLISWTSMITGFANHSL-SHQALQLFEDMLLAGVRPNQVTFVGALAACSNA------ 502 (758)
Q Consensus 435 ~~g--~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~------ 502 (758)
+.| .++++..+++++. .+|..+|+--.-.+...|. ++++++.++++.+..+ -|...|+.....+.+.
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p-~N~SAW~~R~~ll~~l~~~~~~ 198 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDS 198 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHHSCCC--
T ss_pred ccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhhhcccc
Confidence 777 4899999999887 5577889888888888888 6999999999998642 2455555544444433
Q ss_pred --------ccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHc-CCCCCHHHHHH
Q 004369 503 --------GMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRL-----------GCIEEAFDFIKKM-DFEPNEVIWSV 562 (758)
Q Consensus 503 --------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m-~~~p~~~~~~~ 562 (758)
+.++++++++...... .+-|...|+.+-..+.+. +.++++++.++++ ...||. .|..
T Consensus 199 ~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~-~w~l 275 (331)
T 3dss_A 199 GPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN-KWCL 275 (331)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHH
T ss_pred ccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-chHH
Confidence 5688999999988763 334567777666666655 5689999999998 677764 4543
Q ss_pred HHHHHH-----HcCChhHHHHHHHHHhccCCCCchhHHHHHHHh
Q 004369 563 FIAGCR-----RHGNMELGFYAAEQLLKLKPKDCESYAMLLDIF 601 (758)
Q Consensus 563 ll~~~~-----~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 601 (758)
+..+.. ..|..++....+.++.+++|...+-|..|..-+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 276 LTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp HHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 333221 356778899999999999999888888776554
No 177
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.04 E-value=2.2e-05 Score=78.23 Aligned_cols=106 Identities=7% Similarity=-0.045 Sum_probs=81.8
Q ss_pred CHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHH
Q 004369 488 NQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIA 565 (758)
Q Consensus 488 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~ 565 (758)
+...+..+...+...|++++|...|+.+.+. .+.+...|..+...|.+.|++++|++.+++. ...| +...|..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3556677777888888888888888888763 2235677888888888888888888888887 6666 5667888888
Q ss_pred HHHHcCChhHHHHHHHHHhccCCCCchhHH
Q 004369 566 GCRRHGNMELGFYAAEQLLKLKPKDCESYA 595 (758)
Q Consensus 566 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 595 (758)
++...|++++|...++++++++|+++..+.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 110 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFG 110 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHH
Confidence 888888888888888888888887654433
No 178
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.03 E-value=0.00015 Score=79.65 Aligned_cols=168 Identities=10% Similarity=-0.011 Sum_probs=135.4
Q ss_pred CHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccc
Q 004369 438 RIERASRVFVEMS---TRTLISWTSMITGFANHSL----------SHQALQLFEDMLLAGVRP-NQVTFVGALAACSNAG 503 (758)
Q Consensus 438 ~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g 503 (758)
.-++|.+.++++. ..+...|+.--..+...|+ ++++++.++++.+. .| +..+|..-..++.+.|
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcc
Confidence 3456777777765 3355677776666666666 89999999999985 44 4667877777888888
Q ss_pred --cHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHc--------
Q 004369 504 --MVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLG-CIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRH-------- 570 (758)
Q Consensus 504 --~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~-------- 570 (758)
+++++.+.++.+.+. -+-+...|+.-..++.+.| ..+++++.++++ ...| |...|+.....+...
T Consensus 122 ~~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc
Confidence 779999999999873 2345677888888888899 899999999998 6677 788899988887763
Q ss_pred ------CChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchh
Q 004369 571 ------GNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWED 609 (758)
Q Consensus 571 ------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 609 (758)
+.++++.+.++++++++|+|..+|..+..++.+.|+.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 457899999999999999999999999999999998655
No 179
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.02 E-value=2.4e-05 Score=67.19 Aligned_cols=31 Identities=10% Similarity=-0.036 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhccCCC
Q 004369 559 IWSVFIAGCRRHGNMELGFYAAEQLLKLKPK 589 (758)
Q Consensus 559 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 589 (758)
+|..+...+...|++++|++.++++++..|+
T Consensus 85 ~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 85 AMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 4555666666667777777777777666554
No 180
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.01 E-value=7.8e-05 Score=79.50 Aligned_cols=163 Identities=6% Similarity=-0.145 Sum_probs=113.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCH----HHHHHHHHHHhccccHHHHHHHHHHhhhh---cCCCCC-HH
Q 004369 456 SWTSMITGFANHSLSHQALQLFEDMLLA-GVRPNQ----VTFVGALAACSNAGMVYEALGYFEMMQKE---YKIKPV-MD 526 (758)
Q Consensus 456 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~---~~~~p~-~~ 526 (758)
++..+...|...|++++|.+.+.++... +..++. .+.+.+-..+...|+++++..+++..... .+..+. ..
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 3567788888888888888888877652 111222 12233333445678888888888776542 122222 56
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHc-----C--CCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccC---CCC----c
Q 004369 527 HYMCLIDMFVRLGCIEEAFDFIKKM-----D--FEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLK---PKD----C 591 (758)
Q Consensus 527 ~~~~li~~~~~~g~~~~A~~~~~~m-----~--~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---p~~----~ 591 (758)
.+..|...|...|++++|..++++. + -+| ...++..++..|...|++++|...+++++... +.+ .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 7788899999999999999988876 1 122 24468888889999999999999998887653 222 2
Q ss_pred hhHHHHHHHhhhCCCchhHHHHHHHhh
Q 004369 592 ESYAMLLDIFVSAGRWEDVAVVKNLTR 618 (758)
Q Consensus 592 ~~~~~l~~~~~~~g~~~~a~~~~~~m~ 618 (758)
..+..++..+...|++++|.+.+....
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 456778888899999999988776654
No 181
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.00 E-value=2.6e-05 Score=80.97 Aligned_cols=137 Identities=12% Similarity=0.076 Sum_probs=105.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCC-CHHHHHHHH
Q 004369 454 LISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKP-VMDHYMCLI 532 (758)
Q Consensus 454 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li 532 (758)
...|..+...+.+.|++++|+..|++.++. .|+.. .... .+... ...| +...|..+.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~-------~~~~~---~~~~~~~~~~~nla 280 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAE-------DADGA---KLQPVALSCVLNIG 280 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSC-------HHHHG---GGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccC-------hHHHH---HHHHHHHHHHHHHH
Confidence 345777888888888888888888887752 11100 0001 11111 1122 356788899
Q ss_pred HHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhH
Q 004369 533 DMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDV 610 (758)
Q Consensus 533 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 610 (758)
.+|.+.|++++|++.+++. ...| +...|..+..++...|++++|+..++++++++|++...+..+..++...++.+++
T Consensus 281 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 281 ACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998 7777 5778999999999999999999999999999999999999999999988888776
Q ss_pred HH
Q 004369 611 AV 612 (758)
Q Consensus 611 ~~ 612 (758)
.+
T Consensus 361 ~k 362 (370)
T 1ihg_A 361 EK 362 (370)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 182
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.99 E-value=1.6e-05 Score=71.80 Aligned_cols=77 Identities=13% Similarity=0.062 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCc-hhHHHHHHHh
Q 004369 525 MDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDC-ESYAMLLDIF 601 (758)
Q Consensus 525 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~ 601 (758)
...|..+..+|.+.|++++|+..+++. ...| +...|..+..++...|++++|...++++++++|+++ .....|..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT 142 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 467888899999999999999999887 5566 577899999999999999999999999999999987 5555554444
No 183
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.99 E-value=7e-06 Score=69.46 Aligned_cols=94 Identities=16% Similarity=0.187 Sum_probs=69.4
Q ss_pred ccccHHHHHHHHHHhhhhcCC-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHH
Q 004369 501 NAGMVYEALGYFEMMQKEYKI-KP-VMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELG 576 (758)
Q Consensus 501 ~~g~~~~a~~~~~~~~~~~~~-~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a 576 (758)
..|++++|...|+++.+. +. .| +...+..+..+|.+.|++++|++.+++. ...| +..++..+..++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHH
Confidence 356777888888877652 10 23 3567788888888999999999988887 4455 567788888899999999999
Q ss_pred HHHHHHHhccCCCCchhHH
Q 004369 577 FYAAEQLLKLKPKDCESYA 595 (758)
Q Consensus 577 ~~~~~~~~~~~p~~~~~~~ 595 (758)
+..++++++..|+++....
T Consensus 81 ~~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 81 VELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHH
Confidence 9999999999988866543
No 184
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.99 E-value=0.0017 Score=65.59 Aligned_cols=228 Identities=11% Similarity=0.031 Sum_probs=162.6
Q ss_pred CCChhHHHHHHHHhHhCCCCCCH-HHHHHHHHHHhccc-chHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhc-C-CHHH
Q 004369 366 HNGGTEALSIFSKLNSSGMKPDL-YTFSSILTICSRLV-ALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKC-G-RIER 441 (758)
Q Consensus 366 ~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~-~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~-g-~~~~ 441 (758)
.+..++|++++.++... .|+. ..++.--..+...+ .++++..+.+.+++.. +.+..+++.-...+.+. + ++++
T Consensus 67 ~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 67 EEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred CCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHH
Confidence 66778999999999885 4544 34555455556667 5999999999998765 55677787776666666 6 8899
Q ss_pred HHHHHHhcCCC---ChhHHHHHHHHHHhcCCHH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccc------
Q 004369 442 ASRVFVEMSTR---TLISWTSMITGFANHSLSH--------QALQLFEDMLLAGVRPNQVTFVGALAACSNAGM------ 504 (758)
Q Consensus 442 A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~------ 504 (758)
++++++++.+. |..+|+--.-.+.+.|.++ ++++.++++.+.. .-|...|+.....+.+.+.
T Consensus 144 EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 144 EIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchH
Confidence 99999998854 5567776655555555555 9999999999864 2356667776666777665
Q ss_pred -HHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHc-CC-------CC
Q 004369 505 -VYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCI--------------------EEAFDFIKKM-DF-------EP 555 (758)
Q Consensus 505 -~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~m-~~-------~p 555 (758)
+++++++++.+... .+-|...|+.+-..+.+.|+. .+..++..++ +. .+
T Consensus 223 ~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (349)
T 3q7a_A 223 SLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLP 300 (349)
T ss_dssp HHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSC
T ss_pred HHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCC
Confidence 78899999888763 344577788777777777753 4445555555 22 24
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHh-ccCCCCchhHHHHHH
Q 004369 556 NEVIWSVFIAGCRRHGNMELGFYAAEQLL-KLKPKDCESYAMLLD 599 (758)
Q Consensus 556 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-~~~p~~~~~~~~l~~ 599 (758)
....+..|+..|...|+.++|.++++.+. +.+|-....+...+.
T Consensus 301 s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~ 345 (349)
T 3q7a_A 301 VPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRR 345 (349)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence 67789999999999999999999999997 678876555554443
No 185
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.99 E-value=3.6e-06 Score=70.21 Aligned_cols=93 Identities=14% Similarity=0.058 Sum_probs=78.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCC------chhH
Q 004369 523 PVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKD------CESY 594 (758)
Q Consensus 523 p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~ 594 (758)
++...+..+...+.+.|++++|++.+++. ...| +...|..+..++...|++++|+..++++++++|++ ...+
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ 81 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 34567788888999999999999999887 4455 67889999999999999999999999999999998 7788
Q ss_pred HHHHHHhhhCCCchhHHHHHH
Q 004369 595 AMLLDIFVSAGRWEDVAVVKN 615 (758)
Q Consensus 595 ~~l~~~~~~~g~~~~a~~~~~ 615 (758)
..++.++...|++++|...++
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHhHhhhHhHHH
Confidence 888999988888877765444
No 186
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.97 E-value=4.1e-05 Score=68.38 Aligned_cols=93 Identities=14% Similarity=0.086 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHc----CCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHhccCC------CCch
Q 004369 527 HYMCLIDMFVRLGCIEEAFDFIKKM----DFEPN----EVIWSVFIAGCRRHGNMELGFYAAEQLLKLKP------KDCE 592 (758)
Q Consensus 527 ~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p------~~~~ 592 (758)
.+..+...|...|++++|.+.+++. +..++ ..++..+...+...|++++|...++++++..+ ....
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 3444555555555555555555544 00011 33455666666667777777777666665421 1234
Q ss_pred hHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369 593 SYAMLLDIFVSAGRWEDVAVVKNLTRE 619 (758)
Q Consensus 593 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 619 (758)
.+..++.+|...|++++|.+.++...+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 567777788888888888877776554
No 187
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.96 E-value=8.5e-05 Score=63.63 Aligned_cols=104 Identities=10% Similarity=-0.062 Sum_probs=69.0
Q ss_pred HHHHhccccHHHHHHHHHHhhhhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCC----HHHHHHHHHHHHH
Q 004369 496 LAACSNAGMVYEALGYFEMMQKEYKIKPV-MDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEPN----EVIWSVFIAGCRR 569 (758)
Q Consensus 496 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~ 569 (758)
...+...|++++|...|+.+.+...-.+. ...+..+...|.+.|++++|.+.+++. ...|+ ...+..+...+..
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~ 88 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYG 88 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH
Confidence 33455667777777777766653211111 145666777777778888888777776 33343 4557777888888
Q ss_pred cCChhHHHHHHHHHhccCCCCchhHHHHHH
Q 004369 570 HGNMELGFYAAEQLLKLKPKDCESYAMLLD 599 (758)
Q Consensus 570 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 599 (758)
.|++++|...++++++..|+++........
T Consensus 89 ~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~ 118 (129)
T 2xev_A 89 EGKNTEAQQTLQQVATQYPGSDAARVAQER 118 (129)
T ss_dssp TTCHHHHHHHHHHHHHHSTTSHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 888888888888888888887655544433
No 188
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.94 E-value=4.6e-05 Score=79.14 Aligned_cols=112 Identities=5% Similarity=-0.066 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCC-CHHHHHHHHHHH
Q 004369 489 QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKMDFEP-NEVIWSVFIAGC 567 (758)
Q Consensus 489 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p-~~~~~~~ll~~~ 567 (758)
...+..+...+.+.|++++|...|+++.+.. +.. ......+++. ...| +..+|..+..++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~----------~~~~~~~~~~------~~~~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGS----------RAAAEDADGA------KLQPVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHH----------HHHSCHHHHG------GGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcC----------ccccChHHHH------HHHHHHHHHHHHHHHHH
Confidence 3445555666666777777777766665410 100 0000111111 1334 467799999999
Q ss_pred HHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369 568 RRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTRE 619 (758)
Q Consensus 568 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 619 (758)
.+.|++++|+..++++++++|+++.++..++.+|...|++++|.+.++...+
T Consensus 284 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999876
No 189
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.93 E-value=2.6e-05 Score=68.65 Aligned_cols=71 Identities=10% Similarity=0.099 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHc-CC-------CCC-HHHH----HHHHHHHHHcCChhHHHHHHHHHhccCCCCchh
Q 004369 527 HYMCLIDMFVRLGCIEEAFDFIKKM-DF-------EPN-EVIW----SVFIAGCRRHGNMELGFYAAEQLLKLKPKDCES 593 (758)
Q Consensus 527 ~~~~li~~~~~~g~~~~A~~~~~~m-~~-------~p~-~~~~----~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 593 (758)
.|..+..++.+.|++++|+..+++. .+ .|+ ...| .....++...|++++|+..++++++++|+|...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 6677777777777777777776665 44 885 5678 999999999999999999999999999998765
Q ss_pred HHHH
Q 004369 594 YAML 597 (758)
Q Consensus 594 ~~~l 597 (758)
+..+
T Consensus 139 ~~~~ 142 (159)
T 2hr2_A 139 TPGK 142 (159)
T ss_dssp CTTH
T ss_pred HHHH
Confidence 4443
No 190
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.92 E-value=5.8e-05 Score=67.40 Aligned_cols=132 Identities=14% Similarity=0.056 Sum_probs=76.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCC----HH
Q 004369 456 SWTSMITGFANHSLSHQALQLFEDMLLAGVR-PN----QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPV----MD 526 (758)
Q Consensus 456 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~ 526 (758)
++..+...|...|++++|+..+++..+.... ++ ..++..+...+...|++++|..+++...+...-.++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444455555555555555555554432100 11 134555555666666666666666665442111111 34
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHc-------CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccC
Q 004369 527 HYMCLIDMFVRLGCIEEAFDFIKKM-------DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLK 587 (758)
Q Consensus 527 ~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 587 (758)
.+..+...+...|++++|.+.+++. +..+ ...++..+...+...|++++|...+++++++.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 5666777777777777777777665 1111 13456777777888888888888888877653
No 191
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.89 E-value=2.6e-05 Score=80.05 Aligned_cols=147 Identities=11% Similarity=-0.024 Sum_probs=82.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHH
Q 004369 455 ISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDM 534 (758)
Q Consensus 455 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 534 (758)
..|..+...+.+.|++++|+..|++.... .|+... +...|+.+++...+. ...|..+..+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~~ 239 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHHH
Confidence 34666777778888899999998888763 455432 234455555443221 1367788888
Q ss_pred HHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHh-hhCCCchhHH
Q 004369 535 FVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIF-VSAGRWEDVA 611 (758)
Q Consensus 535 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~a~ 611 (758)
|.+.|++++|++.+++. ...| +...|..+..++...|++++|...++++++++|+++..+..|..+. ...+..+++.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998887 5555 6778888999999999999999999999999999888888888884 4456777788
Q ss_pred HHHHHhhhCC
Q 004369 612 VVKNLTREEK 621 (758)
Q Consensus 612 ~~~~~m~~~~ 621 (758)
+.++.|.+..
T Consensus 320 ~~~~~~l~~~ 329 (338)
T 2if4_A 320 EMYKGIFKGK 329 (338)
T ss_dssp ----------
T ss_pred HHHHHhhCCC
Confidence 8888776543
No 192
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.88 E-value=2.4e-05 Score=80.38 Aligned_cols=114 Identities=10% Similarity=-0.099 Sum_probs=89.6
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 004369 491 TFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKMDFEPNEVIWSVFIAGCRRH 570 (758)
Q Consensus 491 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~ 570 (758)
.+..+...+.+.|++++|...|+.+.+. .|+... +...|+.+++...+. ...|..+..++.+.
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~-------~~~~~~~~~~~~~l~-------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDFM-------FQLYGKYQDMALAVK-------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHHH-------HTCCHHHHHHHHHHH-------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccchh-------hhhcccHHHHHHHHH-------HHHHHHHHHHHHHc
Confidence 3556666788899999999999988653 344321 223444555544332 23788899999999
Q ss_pred CChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhhCC
Q 004369 571 GNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREEK 621 (758)
Q Consensus 571 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 621 (758)
|++++|+..++++++++|++...|..++.+|...|++++|...++...+..
T Consensus 244 g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~ 294 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA 294 (338)
T ss_dssp TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999999999987643
No 193
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.86 E-value=6.1e-05 Score=80.87 Aligned_cols=96 Identities=7% Similarity=-0.080 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCC----------------HHHHHHHHHHHHHcCChhHHHHHHHHHhccC
Q 004369 525 MDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEPN----------------EVIWSVFIAGCRRHGNMELGFYAAEQLLKLK 587 (758)
Q Consensus 525 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 587 (758)
...|..+...|.+.|++++|+..|++. ...|+ ...|..+..++.+.|++++|+..++++++++
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 345566667777777777777777766 22332 5789999999999999999999999999999
Q ss_pred CCCchhHHHHHHHhhhCCCchhHHHHHHHhhhC
Q 004369 588 PKDCESYAMLLDIFVSAGRWEDVAVVKNLTREE 620 (758)
Q Consensus 588 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 620 (758)
|+++.+|..++.+|...|++++|...++...+.
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998863
No 194
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.84 E-value=5.7e-05 Score=60.01 Aligned_cols=81 Identities=19% Similarity=0.359 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhh
Q 004369 525 MDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFV 602 (758)
Q Consensus 525 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 602 (758)
...+..+...+.+.|++++|++.+++. ...| +..+|..+...+...|++++|...++++++++|+++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 456777888889999999999999887 4445 57788899999999999999999999999999999999999998887
Q ss_pred hCC
Q 004369 603 SAG 605 (758)
Q Consensus 603 ~~g 605 (758)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
No 195
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.82 E-value=0.0001 Score=78.95 Aligned_cols=125 Identities=13% Similarity=0.093 Sum_probs=94.1
Q ss_pred HhccccHHHHHHHHHHhhhhc----C-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHc---------CCCCC-HHHHHH
Q 004369 499 CSNAGMVYEALGYFEMMQKEY----K-IKPV-MDHYMCLIDMFVRLGCIEEAFDFIKKM---------DFEPN-EVIWSV 562 (758)
Q Consensus 499 ~~~~g~~~~a~~~~~~~~~~~----~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~ 562 (758)
+...|++++|..++++..+.. | -.|+ ..+++.|..+|...|++++|+.++++. +..|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 446677777777776665421 1 1122 467888888888888888888887775 33454 456899
Q ss_pred HHHHHHHcCChhHHHHHHHHHhc-----cCCCCchh---HHHHHHHhhhCCCchhHHHHHHHhhhCCCC
Q 004369 563 FIAGCRRHGNMELGFYAAEQLLK-----LKPKDCES---YAMLLDIFVSAGRWEDVAVVKNLTREEKLS 623 (758)
Q Consensus 563 ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 623 (758)
|...|...|++++|+.+++++++ ++|++|.+ ...|..++...|++++|..++..++++-++
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~ 467 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALN 467 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999987 46776554 457788889999999999999999886543
No 196
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.75 E-value=0.00028 Score=75.12 Aligned_cols=158 Identities=7% Similarity=-0.033 Sum_probs=117.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCH
Q 004369 462 TGFANHSLSHQALQLFEDMLLAGVRPN----------------QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVM 525 (758)
Q Consensus 462 ~~~~~~g~~~~A~~~~~~m~~~g~~p~----------------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~ 525 (758)
..+.+.|++++|++.|.++.+...... ...+..+...|...|++++|.+++..+.+..+..++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 345667888888888888877432211 1246778889999999999999999887643333332
Q ss_pred ----HHHHHHHHHHHHcCCHHHHHHHHHHc-------CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHhcc------C
Q 004369 526 ----DHYMCLIDMFVRLGCIEEAFDFIKKM-------DFEPN-EVIWSVFIAGCRRHGNMELGFYAAEQLLKL------K 587 (758)
Q Consensus 526 ----~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~ 587 (758)
...+.+...+...|+.++|.+++++. +..+. ..++..|...+...|++++|...+++++.. .
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 23344445555678999999988776 33333 457888999999999999999999988764 2
Q ss_pred CCCchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369 588 PKDCESYAMLLDIFVSAGRWEDVAVVKNLTRE 619 (758)
Q Consensus 588 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 619 (758)
|.....+..++.+|...|++++|..+++....
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 33456888999999999999999999888764
No 197
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.74 E-value=6.9e-05 Score=62.86 Aligned_cols=77 Identities=9% Similarity=0.057 Sum_probs=65.3
Q ss_pred HHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369 543 EAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTRE 619 (758)
Q Consensus 543 ~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 619 (758)
+|++.+++. ...| +...|..+...+...|++++|+..++++++++|+++..+..++.+|...|++++|...++...+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456666665 5556 5778888899999999999999999999999999999999999999999999999999888765
No 198
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.72 E-value=9.7e-05 Score=60.19 Aligned_cols=64 Identities=16% Similarity=0.153 Sum_probs=59.8
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369 556 NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTRE 619 (758)
Q Consensus 556 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 619 (758)
+...|..+...+...|++++|+..++++++++|+++..|..++.+|...|++++|.+.++...+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6778999999999999999999999999999999999999999999999999999999998765
No 199
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.72 E-value=2e-05 Score=69.21 Aligned_cols=84 Identities=12% Similarity=0.071 Sum_probs=67.7
Q ss_pred HcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCC----------hhHHHHHHHHHhccCCCCchhHHHHHHHhhhC
Q 004369 537 RLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGN----------MELGFYAAEQLLKLKPKDCESYAMLLDIFVSA 604 (758)
Q Consensus 537 ~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 604 (758)
|.+++++|++.+++. ...| +...|..+..++...++ +++|+..++++++++|++..+|..|+++|.+.
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 455667777777766 4455 56667767776666655 46999999999999999999999999999987
Q ss_pred C-----------CchhHHHHHHHhhhC
Q 004369 605 G-----------RWEDVAVVKNLTREE 620 (758)
Q Consensus 605 g-----------~~~~a~~~~~~m~~~ 620 (758)
| ++++|.+.+++..+.
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHh
Confidence 5 899999999999874
No 200
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.51 E-value=0.00011 Score=64.54 Aligned_cols=89 Identities=13% Similarity=0.054 Sum_probs=57.1
Q ss_pred cccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHc-CCCC-CHHHHHHHHHHHHH
Q 004369 502 AGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGC----------IEEAFDFIKKM-DFEP-NEVIWSVFIAGCRR 569 (758)
Q Consensus 502 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~----------~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~ 569 (758)
.+.+++|.+.++...+. -+.+...|..+..++...|+ +++|+..|++. .+.| +...|..+..+|..
T Consensus 15 ~~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 34445555555554432 11234444445555554443 45777777776 5666 45677777777776
Q ss_pred c-----------CChhHHHHHHHHHhccCCCCch
Q 004369 570 H-----------GNMELGFYAAEQLLKLKPKDCE 592 (758)
Q Consensus 570 ~-----------g~~~~a~~~~~~~~~~~p~~~~ 592 (758)
. |++++|+..++++++++|++..
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~ 126 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTH 126 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhCCCCHH
Confidence 6 4899999999999999999753
No 201
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.43 E-value=0.00061 Score=72.96 Aligned_cols=115 Identities=10% Similarity=-0.076 Sum_probs=87.8
Q ss_pred HHHHcCCHHHHHHHHHHc---------CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHhcc-----CCCCc---hhHH
Q 004369 534 MFVRLGCIEEAFDFIKKM---------DFEPN-EVIWSVFIAGCRRHGNMELGFYAAEQLLKL-----KPKDC---ESYA 595 (758)
Q Consensus 534 ~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~~---~~~~ 595 (758)
.+...|++++|+.++++. +..|+ ..+++.|..+|...|++++|+.++++++++ +|++| ..+.
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 455789999999988776 22343 456999999999999999999999999873 55554 4678
Q ss_pred HHHHHhhhCCCchhHHHHHHHhhhCCCCCCCceeEEEECCEEEEEecCCCCCCChHHHHHHHHHHHHHHHH
Q 004369 596 MLLDIFVSAGRWEDVAVVKNLTREEKLSETDDWSWIRIKDKVYSFKPNDGLHPQSAEIFKVLDELVEKAKC 666 (758)
Q Consensus 596 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~m~~ 666 (758)
.|+.+|..+|++++|..++++..+--. -.. ...||...++...+.+...+++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~-----------------~~l-G~~Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILL-----------------VTH-GPSHPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHH-----------------HHT-CTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHH-----------------HHh-CCCChHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999998765210 011 14799999888777776655543
No 202
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.42 E-value=0.0018 Score=71.10 Aligned_cols=149 Identities=10% Similarity=0.052 Sum_probs=121.4
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhcccc----------HHHHHHHHHHhhhhcCCCCCHHHHHHHHHHH
Q 004369 467 HSLSHQALQLFEDMLLAGVRPNQ-VTFVGALAACSNAGM----------VYEALGYFEMMQKEYKIKPVMDHYMCLIDMF 535 (758)
Q Consensus 467 ~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~----------~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 535 (758)
....++|++.++++.+ +.|+. ..|+.--.++.+.|+ ++++.+.++.+.+. -+-+...|..-..++
T Consensus 42 ~~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l 117 (567)
T 1dce_A 42 GELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLL 117 (567)
T ss_dssp TCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 3446789999999998 46764 455555555666666 99999999999874 234567788888888
Q ss_pred HHcC--CHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcC-ChhHHHHHHHHHhccCCCCchhHHHHHHHhhhC------
Q 004369 536 VRLG--CIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHG-NMELGFYAAEQLLKLKPKDCESYAMLLDIFVSA------ 604 (758)
Q Consensus 536 ~~~g--~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~------ 604 (758)
.+.| ++++++++++++ ...| |...|+.-.....+.| .++++.+.++++++.+|.|..+|...+.++.+.
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred HHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 8999 779999999999 5566 7889999999999999 899999999999999999999999999998774
Q ss_pred --------CCchhHHHHHHHhhh
Q 004369 605 --------GRWEDVAVVKNLTRE 619 (758)
Q Consensus 605 --------g~~~~a~~~~~~m~~ 619 (758)
++++++.+..+....
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~ 220 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFF 220 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHHHHh
Confidence 556888887777654
No 203
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.38 E-value=0.0043 Score=62.48 Aligned_cols=139 Identities=11% Similarity=0.013 Sum_probs=82.9
Q ss_pred CCChhHHHHHHHHHHh--cCC---HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhc--------cccHHHHHHHHHHhh
Q 004369 451 TRTLISWTSMITGFAN--HSL---SHQALQLFEDMLLAGVRPN-QVTFVGALAACSN--------AGMVYEALGYFEMMQ 516 (758)
Q Consensus 451 ~~~~~~~~~li~~~~~--~g~---~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~--------~g~~~~a~~~~~~~~ 516 (758)
..+...|...+.+... .+. ..+|+.+|++..+ ..|+ ...+..+..++.. ..........+....
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 4466777777765442 233 5789999999988 4777 3344443333321 001111111222111
Q ss_pred hhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCc
Q 004369 517 KEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDC 591 (758)
Q Consensus 517 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 591 (758)
.....+.+...|..+.-.+...|++++|...++++ ...|+...|..+...+...|+.++|.+.+++++.++|..+
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 11122445666777666666678888888887777 4456766676677777777888888888888888877653
No 204
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.32 E-value=0.00058 Score=71.98 Aligned_cols=114 Identities=8% Similarity=0.063 Sum_probs=77.5
Q ss_pred HHHHcCCHHHHHHHHHHc------CCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHhcc-----CCCCc---hhHH
Q 004369 534 MFVRLGCIEEAFDFIKKM------DFEPN----EVIWSVFIAGCRRHGNMELGFYAAEQLLKL-----KPKDC---ESYA 595 (758)
Q Consensus 534 ~~~~~g~~~~A~~~~~~m------~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~~---~~~~ 595 (758)
-+.+.|++++|++++++. -+.|+ ..+++.|..+|...|++++|+.+++++++. +|++| ..+.
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 344556666666666554 11221 345777888888888888888888877753 44443 4677
Q ss_pred HHHHHhhhCCCchhHHHHHHHhhhCCCCCCCceeEEEECCEEEEEecCCCCCCChHHHHHHHHHHHHHHH
Q 004369 596 MLLDIFVSAGRWEDVAVVKNLTREEKLSETDDWSWIRIKDKVYSFKPNDGLHPQSAEIFKVLDELVEKAK 665 (758)
Q Consensus 596 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~m~ 665 (758)
.|+.+|...|++++|..++++..+--. ... ...||...+++..|.+...+|+
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~i~~-----------------~~l-G~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFDIMR-----------------VTH-GREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHH-----------------HHT-CTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHH-----------------Hhc-CCCChHHHHHHHHHHHHHHHHh
Confidence 888889999999999998888765110 011 1379999988888888777775
No 205
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.28 E-value=0.0007 Score=56.52 Aligned_cols=81 Identities=17% Similarity=0.150 Sum_probs=57.1
Q ss_pred HHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHh
Q 004369 507 EALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLL 584 (758)
Q Consensus 507 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 584 (758)
++...|+.+.+. .+.+...+..+...|.+.|++++|++.+++. ...| +...|..+...+...|++++|...+++++
T Consensus 3 ~a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345556655441 2234567777777888888888888888776 4445 46677888888888888888888888888
Q ss_pred ccCCC
Q 004369 585 KLKPK 589 (758)
Q Consensus 585 ~~~p~ 589 (758)
++.|.
T Consensus 81 ~~~~~ 85 (115)
T 2kat_A 81 AAAQS 85 (115)
T ss_dssp HHHHH
T ss_pred Hhccc
Confidence 87764
No 206
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.28 E-value=0.0012 Score=52.64 Aligned_cols=68 Identities=10% Similarity=-0.002 Sum_probs=60.2
Q ss_pred CCHHHHHHHHHHHHHcCC---hhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhhCCC
Q 004369 555 PNEVIWSVFIAGCRRHGN---MELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREEKL 622 (758)
Q Consensus 555 p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 622 (758)
+|...|..+..++...++ .++|...++++++++|+++.....++..+...|++++|...++.+.+...
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 467788888888876655 69999999999999999999999999999999999999999999987544
No 207
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.26 E-value=0.00067 Score=55.95 Aligned_cols=66 Identities=9% Similarity=0.020 Sum_probs=61.3
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhhC
Q 004369 555 PNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREE 620 (758)
Q Consensus 555 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 620 (758)
++...|..+...+...|++++|...+++++++.|+++..+..++.+|...|++++|.+.++...+.
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 356678889999999999999999999999999999999999999999999999999999998763
No 208
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.22 E-value=0.0017 Score=51.14 Aligned_cols=64 Identities=14% Similarity=0.279 Sum_probs=59.8
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369 556 NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTRE 619 (758)
Q Consensus 556 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 619 (758)
+...|..+...+...|++++|...++++++..|+++..+..++.+|...|++++|.+.++...+
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3567888999999999999999999999999999999999999999999999999999998876
No 209
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.20 E-value=0.0027 Score=55.06 Aligned_cols=110 Identities=9% Similarity=-0.077 Sum_probs=55.2
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHH----cCCHHH
Q 004369 468 SLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVR----LGCIEE 543 (758)
Q Consensus 468 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~ 543 (758)
+++++|++.|++..+.| .|+.. +...|...+.+++|.++|++..+. -+...+..|..+|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 34566666666666655 33332 334455555566666666665542 233444555555554 455555
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHhcc
Q 004369 544 AFDFIKKMDFEPNEVIWSVFIAGCRR----HGNMELGFYAAEQLLKL 586 (758)
Q Consensus 544 A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~ 586 (758)
|.+.|++.-..-+...+..|...|.. .+|.++|...++++.+.
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 55555554111234444444444444 44555555555555444
No 210
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.08 E-value=0.0031 Score=54.63 Aligned_cols=113 Identities=7% Similarity=-0.125 Sum_probs=90.8
Q ss_pred cccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCChhHHH
Q 004369 502 AGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKMDFEPNEVIWSVFIAGCRR----HGNMELGF 577 (758)
Q Consensus 502 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~ 577 (758)
.+++++|.++|++..+. + .|+.. |..+|...+.+++|.+.|++.-..-+...+..|...|.. .+|.++|.
T Consensus 8 ~~d~~~A~~~~~~aa~~-g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 8 KKDLKKAIQYYVKACEL-N-EMFGC----LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHHT-T-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcC-C-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 45788899999988773 4 34433 777888888889999999988223477788888888887 78999999
Q ss_pred HHHHHHhccCCCCchhHHHHHHHhhh----CCCchhHHHHHHHhhhCCC
Q 004369 578 YAAEQLLKLKPKDCESYAMLLDIFVS----AGRWEDVAVVKNLTREEKL 622 (758)
Q Consensus 578 ~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 622 (758)
..++++.+. .++..+..|+.+|.. .+++++|.+.+++..+.|.
T Consensus 82 ~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 82 QYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 999999877 567888999999988 8899999999998888764
No 211
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.05 E-value=0.0028 Score=54.85 Aligned_cols=91 Identities=12% Similarity=-0.022 Sum_probs=65.3
Q ss_pred CCHHHHHHHHHHHHHcC---ChhHHHHHHHHHhccC-C-CCchhHHHHHHHhhhCCCchhHHHHHHHhhhCCCCCCCcee
Q 004369 555 PNEVIWSVFIAGCRRHG---NMELGFYAAEQLLKLK-P-KDCESYAMLLDIFVSAGRWEDVAVVKNLTREEKLSETDDWS 629 (758)
Q Consensus 555 p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s 629 (758)
++..+.-.+.+++.+.+ +.++|..+++.+++.+ | ++...+..|+-+|.+.|++++|.+.++.+.+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~---------- 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ---------- 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH----------
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh----------
Confidence 56777777788888777 5668888888888877 6 4567778888888888888888888888876
Q ss_pred EEEECCEEEEEecCCCCCCChHHHHHHHHHHHHHHHHcCccc
Q 004369 630 WIRIKDKVYSFKPNDGLHPQSAEIFKVLDELVEKAKCFGYKQ 671 (758)
Q Consensus 630 ~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~m~~~g~~~ 671 (758)
..|+..+.......+.+++++.|.+-
T Consensus 100 ----------------ieP~n~QA~~Lk~~ie~~~~kdgl~G 125 (152)
T 1pc2_A 100 ----------------TEPQNNQAKELERLIDKAMKKDGLVG 125 (152)
T ss_dssp ----------------HCTTCHHHHHHHHHHHHHHHHTTCCC
T ss_pred ----------------cCCCCHHHHHHHHHHHHHHHHhhHHH
Confidence 34444554444555566677776543
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.00 E-value=0.00088 Score=70.47 Aligned_cols=62 Identities=6% Similarity=-0.019 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHhcc-----CCCCc---hhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369 558 VIWSVFIAGCRRHGNMELGFYAAEQLLKL-----KPKDC---ESYAMLLDIFVSAGRWEDVAVVKNLTRE 619 (758)
Q Consensus 558 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 619 (758)
.+++.|..+|...|++++|+.++++++++ +|+++ ..+..|+.+|..+|++++|..++++..+
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 34666666666666666666666666542 34333 3566677777777777777777776654
No 213
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.98 E-value=0.043 Score=45.47 Aligned_cols=140 Identities=4% Similarity=-0.044 Sum_probs=102.2
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 004369 465 ANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEA 544 (758)
Q Consensus 465 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 544 (758)
.-.|..++..++..+.... .+..-|+-++.-....-+-+-..+.++.+-+-+.+. .+|++...
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis--------------~C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcH--------------hhhcHHHH
Confidence 3457777788887777653 244556666655555566666677777665533332 46666666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhhCCCC
Q 004369 545 FDFIKKMDFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREEKLS 623 (758)
Q Consensus 545 ~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 623 (758)
...+-.++. +..-.+.-+......|+.+.-.++...++..+|.+++....++++|.+.|...+|.+++++.-++|++
T Consensus 81 i~C~~~~n~--~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 81 VECGVINNT--LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHTTC--CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhcc--hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 666666643 44556677888889999999999999988777888999999999999999999999999999999885
No 214
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.98 E-value=0.0011 Score=53.77 Aligned_cols=66 Identities=8% Similarity=0.014 Sum_probs=51.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCC
Q 004369 524 VMDHYMCLIDMFVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPK 589 (758)
Q Consensus 524 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 589 (758)
+...+..+...|.+.|++++|++.|++. ...| +...|..+..++...|++++|...+++++++.|.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 4566777888888888888888888877 4445 4567888888888888888888888888877653
No 215
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.96 E-value=0.0026 Score=51.12 Aligned_cols=64 Identities=17% Similarity=0.304 Sum_probs=52.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHc-CCCC-CHH-HHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhH
Q 004369 531 LIDMFVRLGCIEEAFDFIKKM-DFEP-NEV-IWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESY 594 (758)
Q Consensus 531 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 594 (758)
....+.+.|++++|.+.+++. ...| +.. .|..+...+...|++++|...++++++++|+++..+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 456677888888888888887 4455 556 788888888899999999999999999999887766
No 216
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.84 E-value=0.006 Score=64.12 Aligned_cols=94 Identities=13% Similarity=0.052 Sum_probs=65.0
Q ss_pred cccHHHHHHHHHHhhhhc--CCC---CC-HHHHHHHHHHHHHcCCHHHHHHHHHHc---------CCCCC-HHHHHHHHH
Q 004369 502 AGMVYEALGYFEMMQKEY--KIK---PV-MDHYMCLIDMFVRLGCIEEAFDFIKKM---------DFEPN-EVIWSVFIA 565 (758)
Q Consensus 502 ~g~~~~a~~~~~~~~~~~--~~~---p~-~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~ll~ 565 (758)
.|++++|..++++..+.. -+. |+ ..+++.|..+|...|++++|+.++++. +..|+ ..+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 456677776666654421 111 22 456777888888888888888777765 33454 345889999
Q ss_pred HHHHcCChhHHHHHHHHHhc-----cCCCCchhHH
Q 004369 566 GCRRHGNMELGFYAAEQLLK-----LKPKDCESYA 595 (758)
Q Consensus 566 ~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~~ 595 (758)
.|...|++++|+.+++++++ ++|++|.+-.
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 425 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISE 425 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 99999999999999998887 4677765543
No 217
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.73 E-value=0.0036 Score=50.28 Aligned_cols=58 Identities=19% Similarity=0.316 Sum_probs=53.8
Q ss_pred HHHHHHHcCChhHHHHHHHHHhccCCCCch-hHHHHHHHhhhCCCchhHHHHHHHhhhC
Q 004369 563 FIAGCRRHGNMELGFYAAEQLLKLKPKDCE-SYAMLLDIFVSAGRWEDVAVVKNLTREE 620 (758)
Q Consensus 563 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 620 (758)
....+...|++++|...++++++.+|+++. .+..++.+|...|++++|.+.++...+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 456778899999999999999999999999 9999999999999999999999998863
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.68 E-value=0.013 Score=61.65 Aligned_cols=99 Identities=11% Similarity=0.082 Sum_probs=63.0
Q ss_pred HhccccHHHHHHHHHHhhhhc--CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHc---------CCCCC-HHHHHH
Q 004369 499 CSNAGMVYEALGYFEMMQKEY--KIKPV----MDHYMCLIDMFVRLGCIEEAFDFIKKM---------DFEPN-EVIWSV 562 (758)
Q Consensus 499 ~~~~g~~~~a~~~~~~~~~~~--~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~ 562 (758)
+.+.|++++|..++++..+.. -+.|+ ..+++.|..+|...|++++|+.++++. +..|+ ..+++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 334556666666665554311 11111 345666777777777777777776655 33444 345888
Q ss_pred HHHHHHHcCChhHHHHHHHHHhc-----cCCCCchhHHHH
Q 004369 563 FIAGCRRHGNMELGFYAAEQLLK-----LKPKDCESYAML 597 (758)
Q Consensus 563 ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~~~l 597 (758)
|...|...|++++|+.+++++++ ++|++|.+-..+
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~ 416 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLI 416 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 88888889999999888888876 467776655443
No 219
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.24 E-value=0.014 Score=56.22 Aligned_cols=87 Identities=14% Similarity=0.167 Sum_probs=70.2
Q ss_pred HHHHHHHHHHc-CCCCC---HHHHHHHHHHHHHc-----CChhHHHHHHHHHhccCCCC-chhHHHHHHHhhhC-CCchh
Q 004369 541 IEEAFDFIKKM-DFEPN---EVIWSVFIAGCRRH-----GNMELGFYAAEQLLKLKPKD-CESYAMLLDIFVSA-GRWED 609 (758)
Q Consensus 541 ~~~A~~~~~~m-~~~p~---~~~~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 609 (758)
..+|...+++. .+.|+ ...|..|...|... |+.++|++.++++++++|+. ..+++.+++.|+.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 45666666666 56676 56788888888884 99999999999999999974 99999999999885 99999
Q ss_pred HHHHHHHhhhCCCCCCCc
Q 004369 610 VAVVKNLTREEKLSETDD 627 (758)
Q Consensus 610 a~~~~~~m~~~~~~~~~~ 627 (758)
+.+.+++.........|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999998866544344
No 220
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.19 E-value=0.085 Score=60.93 Aligned_cols=101 Identities=16% Similarity=0.099 Sum_probs=66.7
Q ss_pred HHhhcCChHHHHHHHhccCCCCcchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHHHHH
Q 004369 219 LYSTCGSLNSAIKAFNRIREKNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQV 298 (758)
Q Consensus 219 ~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 298 (758)
.+..+|++++|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.. |..+...+...++.+...++
T Consensus 661 ~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~ 729 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTL 729 (814)
T ss_dssp HHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHH
T ss_pred hhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHH
Confidence 3456788888888877663 456888888888888888888888888753 44444444556666655555
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHcc
Q 004369 299 HSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDG 336 (758)
Q Consensus 299 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 336 (758)
-......| -++.-..+|.+.|++++|.+++.+
T Consensus 730 ~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 730 AKDAETTG------KFNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHcC------chHHHHHHHHHcCCHHHHHHHHHH
Confidence 55444443 123344456667777777766544
No 221
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.17 E-value=0.045 Score=55.14 Aligned_cols=132 Identities=10% Similarity=0.032 Sum_probs=91.7
Q ss_pred CCCCHHHHHHHHHHHhc-----cccHHHHHHHHHHhhhhcCCCCC-HHHHHHHHHHHH----HcC-------CHHHHHHH
Q 004369 485 VRPNQVTFVGALAACSN-----AGMVYEALGYFEMMQKEYKIKPV-MDHYMCLIDMFV----RLG-------CIEEAFDF 547 (758)
Q Consensus 485 ~~p~~~t~~~ll~a~~~-----~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~----~~g-------~~~~A~~~ 547 (758)
.+.|...|...+.+... .....+|..+|+++.+ +.|+ ...|..+..+|. ..+ .+.+|.+.
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~---lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ---SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 45556667776665432 3346889999999976 3566 344443333332 111 11223332
Q ss_pred HHHcCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhhC
Q 004369 548 IKKMDFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREE 620 (758)
Q Consensus 548 ~~~m~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 620 (758)
...+...| +..+|..+...+...|++++|...++++++++|+ ...|..++.++.-.|++++|...+++....
T Consensus 267 ~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 267 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 22333334 7788888888788889999999999999999975 678899999999999999999999988764
No 222
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.17 E-value=0.023 Score=45.02 Aligned_cols=76 Identities=12% Similarity=0.060 Sum_probs=58.5
Q ss_pred CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHH
Q 004369 522 KPVMDHYMCLIDMFVRLGC---IEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAM 596 (758)
Q Consensus 522 ~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 596 (758)
+++...+..+..++...++ .++|..++++. ...| +...+..+...+.+.|++++|...++++++.+|++ .....
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~-~~~~~ 81 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN-LDRVT 81 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT-CCHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-ccHHH
Confidence 3456777788888765554 68899999888 6667 56778888888999999999999999999999883 33444
Q ss_pred HH
Q 004369 597 LL 598 (758)
Q Consensus 597 l~ 598 (758)
+.
T Consensus 82 i~ 83 (93)
T 3bee_A 82 II 83 (93)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 223
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.09 E-value=0.038 Score=44.81 Aligned_cols=74 Identities=9% Similarity=0.122 Sum_probs=57.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHc-----C----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhH
Q 004369 524 VMDHYMCLIDMFVRLGCIEEAFDFIKKM-----D----FEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESY 594 (758)
Q Consensus 524 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-----~----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 594 (758)
+..-+-.|...+.+.|+++.|...++.+ + -.+...++..|..++.+.|+++.|...++++++++|+++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 3444556777777888888887777765 1 112466789999999999999999999999999999987765
Q ss_pred HHH
Q 004369 595 AML 597 (758)
Q Consensus 595 ~~l 597 (758)
..+
T Consensus 84 ~n~ 86 (104)
T 2v5f_A 84 GNL 86 (104)
T ss_dssp HHH
T ss_pred hhH
Confidence 555
No 224
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.97 E-value=0.051 Score=62.82 Aligned_cols=152 Identities=15% Similarity=0.102 Sum_probs=84.9
Q ss_pred hcCCHHHHHH-HHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHH
Q 004369 435 KCGRIERASR-VFVEMSTRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFE 513 (758)
Q Consensus 435 ~~g~~~~A~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 513 (758)
..+++++|.+ ++..+... .....++..+.+.|..++|+++.+.-. .- .......|++++|.++.+
T Consensus 611 ~~~~~~~a~~~~l~~i~~~--~~~~~~~~~l~~~~~~~~a~~~~~~~~--------~~----f~~~l~~~~~~~A~~~~~ 676 (814)
T 3mkq_A 611 LRGEIEEAIENVLPNVEGK--DSLTKIARFLEGQEYYEEALNISPDQD--------QK----FELALKVGQLTLARDLLT 676 (814)
T ss_dssp HTTCHHHHHHHTGGGCCCH--HHHHHHHHHHHHTTCHHHHHHHCCCHH--------HH----HHHHHHHTCHHHHHHHHT
T ss_pred HhCCHHHHHHHHHhcCCch--HHHHHHHHHHHhCCChHHheecCCCcc--------hh----eehhhhcCCHHHHHHHHH
Confidence 4567777776 55433301 122566666777777777776553211 11 122345678888877654
Q ss_pred HhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCC----------CCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 004369 514 MMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKMDF----------EPNEVIWSVFIAGCRRHGNMELGFYAAEQL 583 (758)
Q Consensus 514 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----------~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 583 (758)
.+ .+...|..|.+++.+.|+++.|.+.|.+++- .-+...+..+.......|+++.|..++.+.
T Consensus 677 ~~-------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~ 749 (814)
T 3mkq_A 677 DE-------SAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWIA 749 (814)
T ss_dssp TC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hh-------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHc
Confidence 33 3456788888888888888888888887631 112222233334444444444444443332
Q ss_pred hccCCCCchhHHHHHHHhhhCCCchhHHHHHH
Q 004369 584 LKLKPKDCESYAMLLDIFVSAGRWEDVAVVKN 615 (758)
Q Consensus 584 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 615 (758)
.-+....++|.+.++|++|..+-+
T Consensus 750 --------g~~~~a~~~~~~~~~~~~A~~lA~ 773 (814)
T 3mkq_A 750 --------GDIQGAKDLLIKSQRFSEAAFLGS 773 (814)
T ss_dssp --------TCHHHHHHHHHHTTCHHHHHHHHH
T ss_pred --------CCHHHHHHHHHHcCChHHHHHHHH
Confidence 233445556666677777666544
No 225
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.94 E-value=0.038 Score=45.91 Aligned_cols=65 Identities=11% Similarity=-0.095 Sum_probs=34.8
Q ss_pred CCHHHHHHHHHHHHHcCChhH---HHHHHHHHhccC-C-CCchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369 555 PNEVIWSVFIAGCRRHGNMEL---GFYAAEQLLKLK-P-KDCESYAMLLDIFVSAGRWEDVAVVKNLTRE 619 (758)
Q Consensus 555 p~~~~~~~ll~~~~~~g~~~~---a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 619 (758)
|+..+--.+.+++.+.++... ++.+++.+++.+ | ........|+-++.+.|++++|.+..+.+.+
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 444444445555555544333 555555555554 3 2344555566666666666666666665554
No 226
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.65 E-value=0.035 Score=48.00 Aligned_cols=91 Identities=11% Similarity=0.057 Sum_probs=60.3
Q ss_pred cHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHc-CCC-C--CHHHHHHHHHHHHHcCChhHH
Q 004369 504 MVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLG---CIEEAFDFIKKM-DFE-P--NEVIWSVFIAGCRRHGNMELG 576 (758)
Q Consensus 504 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m-~~~-p--~~~~~~~ll~~~~~~g~~~~a 576 (758)
.+..+.+.|.+..+. + .++..+.-.+..++.+.. ++++++.++++. ... | +...+-.|.-+|.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHH
Confidence 344455555544431 2 255566666666666666 455666666665 222 4 245566788888999999999
Q ss_pred HHHHHHHhccCCCCchhHHH
Q 004369 577 FYAAEQLLKLKPKDCESYAM 596 (758)
Q Consensus 577 ~~~~~~~~~~~p~~~~~~~~ 596 (758)
.+.++.+++.+|++..+...
T Consensus 91 ~~y~~~lL~ieP~n~QA~~L 110 (152)
T 1pc2_A 91 LKYVRGLLQTEPQNNQAKEL 110 (152)
T ss_dssp HHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHH
Confidence 99999999999998655444
No 227
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.52 E-value=0.0034 Score=64.46 Aligned_cols=432 Identities=11% Similarity=0.055 Sum_probs=239.9
Q ss_pred hhHHHHHHHHhhcCCChHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhccc
Q 004369 109 FFVMTFLVNVYGKCGNMEEAQKVFDNLPRINVVSWTSLISGYVQNSQPELAIHVFLDMLEAGNYPTNVTLGTALTACSSL 188 (758)
Q Consensus 109 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 188 (758)
+.+|..|..++.+.|++.+|++-|=+ ..|+..|..+|....+.|.+++-+..+...++..- ++..=+.++-+|++.
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayAk~ 129 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAKT 129 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHHTS
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHHhh
Confidence 45677788888888888888765533 34666788888888888888888888776655433 334445677788887
Q ss_pred CChHHHHHHHHHHHHhCCCCChhHHHHHHHHHhhcCChHHHHHHHhccCC------------------------CCcchH
Q 004369 189 ESIRLGKQIHAYVVKYQTEDDTSVGNSLCSLYSTCGSLNSAIKAFNRIRE------------------------KNVMSW 244 (758)
Q Consensus 189 ~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~------------------------~~~~~~ 244 (758)
+++.+-.++.. .|+..-.....+-+...|.++.|.-+|..+.. .++.+|
T Consensus 130 ~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktW 202 (624)
T 3lvg_A 130 NRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTW 202 (624)
T ss_dssp CSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSH
T ss_pred CcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHH
Confidence 77654433221 34544445566666777778877777776652 467789
Q ss_pred HHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 004369 245 TTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKC 324 (758)
Q Consensus 245 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 324 (758)
-.+-.+|...+.+.-|.-.--.+.-. ||. ...++.-|-..|.+++-..+++..+.. -.....+++-|.-.|+|-
T Consensus 203 KeV~~ACvd~~EfrLAqicGLniIvh---ade--L~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 203 KEVCFACVDGKEFRLAQMCGLHIVVH---ADE--LEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF 276 (624)
T ss_dssp HHHTHHHHHSCTTTTTTHHHHHHHCC---SSC--CSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS
T ss_pred HHHHHHHhCchHHHHHHHhcchhccc---HHH--HHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc
Confidence 99999999999888776665554422 221 223455577778888777777766522 145678888898889886
Q ss_pred CCHHHHHHHHccCCC-----------CCeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCHHHHHH
Q 004369 325 GLVDEAQKLFDGMSH-----------VNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSS 393 (758)
Q Consensus 325 g~~~~A~~~~~~m~~-----------~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 393 (758)
+.++..+.++.... .....|.-++-.|.+ ...++.|... |.+. .|+...-..
T Consensus 277 -~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~-----------ydE~DnA~lt---Mi~h--~~~Aw~h~~ 339 (624)
T 3lvg_A 277 -KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDK-----------YEEYDNAIIT---MMNH--PTDAWKEGQ 339 (624)
T ss_dssp -CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHH-----------HTCHHHHHHT---TTSC--HHHHCCGGG
T ss_pred -CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhc-----------chhHHHHHHH---HHhC--ChhhccHHH
Confidence 45555555554322 123356666666666 5555554432 2211 011111111
Q ss_pred HHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhH-------------HhhhHHhcCCHHHHHHHHHhcCCCChhHHH-H
Q 004369 394 ILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTA-------------LVNMYKKCGRIERASRVFVEMSTRTLISWT-S 459 (758)
Q Consensus 394 ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~-------------Li~~y~~~g~~~~A~~~~~~~~~~~~~~~~-~ 459 (758)
......+.++.+.--+....-++. .| ...+- .++++.|.|++.-....+......|...-| +
T Consensus 340 Fkdii~KVaN~EiyYKAi~FYL~e--~P--~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeA 415 (624)
T 3lvg_A 340 FKDIITKVANVELYYRAIQFYLEF--KP--LLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNES 415 (624)
T ss_dssp GTTTGGGCSCSHHHHHHHHHHTTS--CC--TTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHH
T ss_pred HHHHHHHcchHHHHHHHHHHHHHh--Ch--HHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHH
Confidence 111112222222211111111111 11 11122 233444445544444444444444443333 2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcC
Q 004369 460 MITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLG 539 (758)
Q Consensus 460 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 539 (758)
+-..|....+++ +...-+.+|-+-..+.-|.++ .+ + +-.+.-..-...|.+.+
T Consensus 416 ln~L~IEEEDy~-------------------~LR~SId~ydNFD~i~LA~rL----Ek-H---eL~eFRrIAA~LYkkn~ 468 (624)
T 3lvg_A 416 LNNLFITEEDYQ-------------------ALRTSIDAYDNFDNISLAQRL----EK-H---ELIEFRRIAAYLFKGNN 468 (624)
T ss_dssp HHHHHHHTTCCH-------------------HHHHTTSSCCCSCTTHHHHHH----HT-C---SSHHHHHHHHHHHHTTC
T ss_pred HHHHHhhhhhHH-------------------HHHHHHHHhccccHHHHHHHH----hh-C---chHHHHHHHHHHHHhcc
Confidence 333344444332 222223333333333333322 22 1 22333444556788889
Q ss_pred CHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHH
Q 004369 540 CIEEAFDFIKKMDFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVV 613 (758)
Q Consensus 540 ~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 613 (758)
+++++.++.++=+.-.| .+...+..|+.+.++++++-.++.+-. +.+....-.|...=+.+-+.++
T Consensus 469 rw~qsi~l~KkDklykD------AietAa~S~~~elaeeLL~yFv~~g~~--EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 469 RWKQSVELCKKDSLYKD------AMQYASESKDTELAEELLQWFLQEEKR--ECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp HHHHHSSCSSTTCCTTG------GGTTTTTCCCTTHHHHHHHHHHHHCST--HHHHHHHHHTSSSSSCHHHHHH
T ss_pred cHHHHHHHHHhcccHHH------HHHHHHHcCCHHHHHHHHHHHHHcCch--HHHHHHHHHHhhccChHHHHHH
Confidence 99998887665432223 334556778888888888887776543 5566666666666666655543
No 228
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.35 E-value=0.29 Score=41.32 Aligned_cols=91 Identities=11% Similarity=-0.016 Sum_probs=57.6
Q ss_pred CCCHHHHHHHHHHHHHcCC---hhHHHHHHHHHhccCCC-CchhHHHHHHHhhhCCCchhHHHHHHHhhhCCCCCCCcee
Q 004369 554 EPNEVIWSVFIAGCRRHGN---MELGFYAAEQLLKLKPK-DCESYAMLLDIFVSAGRWEDVAVVKNLTREEKLSETDDWS 629 (758)
Q Consensus 554 ~p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s 629 (758)
.|+..+--.+.+++.+..+ ..++..+++.++...|. .......|+-+|.+.|++++|+++.+.+.+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~---------- 105 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE---------- 105 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH----------
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh----------
Confidence 3555555556666666553 44677777777776663 445566677777888888888887777765
Q ss_pred EEEECCEEEEEecCCCCCCChHHHHHHHHHHHHHHHHcCcc
Q 004369 630 WIRIKDKVYSFKPNDGLHPQSAEIFKVLDELVEKAKCFGYK 670 (758)
Q Consensus 630 ~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~m~~~g~~ 670 (758)
..|...+.......+.++|.+.|.+
T Consensus 106 ----------------~eP~n~QA~~Lk~~Ie~~i~kdGli 130 (144)
T 1y8m_A 106 ----------------HERNNKQVGALKSMVEDKIQKETLK 130 (144)
T ss_dssp ----------------TCCCCHHHHHHHHHHHHHHHHTTTT
T ss_pred ----------------cCCCcHHHHHHHHHHHHHHHHhchh
Confidence 3445555444444555667666654
No 229
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.93 E-value=0.48 Score=41.99 Aligned_cols=127 Identities=12% Similarity=0.060 Sum_probs=79.4
Q ss_pred HHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHH
Q 004369 433 YKKCGRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYF 512 (758)
Q Consensus 433 y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 512 (758)
-..+|+++.|.++.+.+ .+...|..|.......|+.+-|.+.|.+... |..+.--|.-.|+.+.-.++-
T Consensus 15 AL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla 83 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQ 83 (177)
T ss_dssp HHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHH
Confidence 34678888888887766 4567888888888888888888888887643 223333344566666555444
Q ss_pred HHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 004369 513 EMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKMDFEPNEVIWSVFIAGCRRHGNMELGFYAAEQL 583 (758)
Q Consensus 513 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 583 (758)
+....+ | -++.-...+.-.|+++++.+++.+.+.-|.... ....+|-.+.|.++.+.+
T Consensus 84 ~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~------~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 84 NIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYA------VAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHH------HHHHTTCHHHHHHHHHHT
T ss_pred HHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHH------HHHHcCcHHHHHHHHHHh
Confidence 433331 2 133444455667888888888887754333221 123366667777766554
No 230
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=94.76 E-value=0.00051 Score=70.30 Aligned_cols=262 Identities=13% Similarity=0.121 Sum_probs=171.2
Q ss_pred CChhHHHHHHHHHhhcCChHHHHHHHhccCCCCcchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHc
Q 004369 208 DDTSVGNSLCSLYSTCGSLNSAIKAFNRIREKNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCG 287 (758)
Q Consensus 208 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 287 (758)
..+.+|+.|..++.+.|.+.+|.+-|- ...|+..|..+|....+.|.+++-+..+.-.++..- +...=+.++-+++
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyI--kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayA 127 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYI--KADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALA 127 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSC--CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHH--hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHH
Confidence 345677888888888888877776653 335667788888888888888888877765555422 2333446777777
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCeeechhHHHHHhhhchhhhchhhcCC
Q 004369 288 TMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSHVNLVTWNAMIAGHAQMMDLAKDDLSAHN 367 (758)
Q Consensus 288 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~~~l~~~g 367 (758)
+.+++.+-+++.. .||..-...+.+-+...|.++.|.-+|..+.+ |.-|...+++ .|
T Consensus 128 k~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN-----~akLAstLV~-----------L~ 184 (624)
T 3lvg_A 128 KTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVH-----------LG 184 (624)
T ss_dssp TSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC-----CTTTSSSSSS-----------CS
T ss_pred hhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc-----HHHHHHHHHH-----------HH
Confidence 7777665444332 45555556677777777888877777776654 5555555666 66
Q ss_pred ChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHH
Q 004369 368 GGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFV 447 (758)
Q Consensus 368 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~ 447 (758)
++..|.+.-++ .-+..||-.+-.+|...+.+..|...--.++-.. .-...|+..|-+.|.+++-..+++
T Consensus 185 ~yq~AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvha-----deL~elv~~YE~~G~f~ELIsLlE 253 (624)
T 3lvg_A 185 EYQAAVDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHA-----DELEELINYYQDRGYFEELITMLE 253 (624)
T ss_dssp GGGSSTTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCS-----SCCSGGGSSSSTTCCCTTSTTTHH
T ss_pred HHHHHHHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhcccH-----HHHHHHHHHHHhCCCHHHHHHHHH
Confidence 66666543222 3366788888899998888877655433333211 122357888999999999888888
Q ss_pred hcC---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHH
Q 004369 448 EMS---TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEM 514 (758)
Q Consensus 448 ~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 514 (758)
.-. ....-.|+-|.-.|++.. +++-++.++.... +.| .--++++|.+...|.++.-++..
T Consensus 254 aglglErAHmGmFTELaILYsKY~-PeKlmEHlklf~s---riN---ipKviracE~ahLW~ElvfLY~~ 316 (624)
T 3lvg_A 254 AALGLERAHMGMFTELAILYSKFK-PQKMREHLELFWS---RVN---IPKVLRAAEQAHLWAELVFLYDK 316 (624)
T ss_dssp HHTTSTTCCHHHHHHHHHHHHSSC-TTHHHHHHTTSSS---SSC---CTTTHHHHTTTTCHHHHHHHHHH
T ss_pred HHhCCCchhHHHHHHHHHHHHhcC-HHHHHHHHHHHHH---hcc---HHHHHHHHHHHhhHHHHHHHHhc
Confidence 754 457778888888888763 4454444433222 111 12356778777777777666553
No 231
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=93.46 E-value=2.4 Score=37.46 Aligned_cols=104 Identities=13% Similarity=0.175 Sum_probs=72.6
Q ss_pred HHhhcCChHHHHHHHhccCCCCcchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChHHHHHH
Q 004369 219 LYSTCGSLNSAIKAFNRIREKNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRVGAQV 298 (758)
Q Consensus 219 ~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 298 (758)
...++|+++.|.++.+.+ .+...|..|.....+.|+++-|.+.|.+... +..+.-.+...|+.+.-..+
T Consensus 14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHH
Confidence 445778888888887766 3566899998888889999999888888653 44444445556666666655
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCC
Q 004369 299 HSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSH 339 (758)
Q Consensus 299 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 339 (758)
-......| -+|.-...+.-.|+++++.++|.+...
T Consensus 83 a~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r 117 (177)
T 3mkq_B 83 QNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS 117 (177)
T ss_dssp HHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC
T ss_pred HHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC
Confidence 55555444 124445556677899999888877654
No 232
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=93.41 E-value=0.56 Score=37.67 Aligned_cols=64 Identities=9% Similarity=-0.085 Sum_probs=54.5
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHhccC-------CCCchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369 556 NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLK-------PKDCESYAMLLDIFVSAGRWEDVAVVKNLTRE 619 (758)
Q Consensus 556 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 619 (758)
+..-.-.|...+...|+++.|...++++++.. +..+..+..|+.+|.+.|++++|....+...+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 34456678899999999999999999998753 34466899999999999999999999999876
No 233
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=93.20 E-value=0.32 Score=40.49 Aligned_cols=64 Identities=13% Similarity=-0.016 Sum_probs=30.4
Q ss_pred CHHHHHHHHHHHHHcCC---hhHHHHHHHHHhccCCC-CchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369 556 NEVIWSVFIAGCRRHGN---MELGFYAAEQLLKLKPK-DCESYAMLLDIFVSAGRWEDVAVVKNLTRE 619 (758)
Q Consensus 556 ~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 619 (758)
+..+--.+.+++.+..+ ..+|+.+++.+++.+|. .......|+-++.+.|++++|.+..+.+.+
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 33333334444444332 23455555555554442 234444555555555555555555555543
No 234
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=92.99 E-value=1.1 Score=37.06 Aligned_cols=74 Identities=11% Similarity=0.085 Sum_probs=48.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHH---HHHHHHHc-CCC-C--CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHH
Q 004369 523 PVMDHYMCLIDMFVRLGCIEE---AFDFIKKM-DFE-P--NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYA 595 (758)
Q Consensus 523 p~~~~~~~li~~~~~~g~~~~---A~~~~~~m-~~~-p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 595 (758)
|+..+--.+..++.+..+..+ ++.+++.. ... | .....-.|.-++.+.|+++.|.+.++.+++.+|+|..+..
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence 444444455556666555444 55555555 222 3 2233456777889999999999999999999998865544
Q ss_pred H
Q 004369 596 M 596 (758)
Q Consensus 596 ~ 596 (758)
.
T Consensus 113 L 113 (126)
T 1nzn_A 113 L 113 (126)
T ss_dssp H
T ss_pred H
Confidence 3
No 235
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=92.94 E-value=13 Score=40.68 Aligned_cols=123 Identities=11% Similarity=0.030 Sum_probs=72.9
Q ss_pred CCHHHHHHHHHHHHHcC-CCCCHH--HHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 004369 468 SLSHQALQLFEDMLLAG-VRPNQV--TFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEA 544 (758)
Q Consensus 468 g~~~~A~~~~~~m~~~g-~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 544 (758)
.+.+.|..+|....... +.+... ....+.......+...++...+...... .++.....-.+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHHH
Confidence 37899999998887543 322221 2222333344455345666666654432 23333333344445578999999
Q ss_pred HHHHHHcCCCC-CHHHH-HHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHH
Q 004369 545 FDFIKKMDFEP-NEVIW-SVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAML 597 (758)
Q Consensus 545 ~~~~~~m~~~p-~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 597 (758)
...|+.|+..+ +..-| -=+..+....|+.++|..+++++.+ +. ..|..|
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~--~~--~fYg~l 355 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ--QR--GFYPMV 355 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SC--SHHHHH
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc--CC--ChHHHH
Confidence 99999995443 22222 2244566778999999999999875 32 455544
No 236
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.83 E-value=1.1 Score=49.91 Aligned_cols=54 Identities=17% Similarity=0.140 Sum_probs=49.9
Q ss_pred HHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhh
Q 004369 565 AGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTR 618 (758)
Q Consensus 565 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 618 (758)
.-|...|+++.|+.++++++..-|.+-.+|..|+.+|...|+|+.|.-.++.+.
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 345678999999999999999999999999999999999999999999999885
No 237
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=92.40 E-value=2 Score=36.66 Aligned_cols=38 Identities=13% Similarity=0.369 Sum_probs=28.0
Q ss_pred CCCChhHHHHHHHHHHhcCCH------HHHHHHHHHHHHcCCCCC
Q 004369 450 STRTLISWTSMITGFANHSLS------HQALQLFEDMLLAGVRPN 488 (758)
Q Consensus 450 ~~~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~~p~ 488 (758)
...|..+|-..+.-..+.|++ ++..++|++.... ++|+
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~ 52 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPD 52 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGG
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCcc
Confidence 356777888888888777887 7777888877764 5665
No 238
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=92.07 E-value=0.2 Score=48.36 Aligned_cols=82 Identities=15% Similarity=0.113 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhhhhcCCCCC---HHHHHHHHHHHHHc-----CCHHHHHHHHHHc-CCCCC--HHHHHHHHHHHHH-cCC
Q 004369 505 VYEALGYFEMMQKEYKIKPV---MDHYMCLIDMFVRL-----GCIEEAFDFIKKM-DFEPN--EVIWSVFIAGCRR-HGN 572 (758)
Q Consensus 505 ~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~-----g~~~~A~~~~~~m-~~~p~--~~~~~~ll~~~~~-~g~ 572 (758)
..+|...++++.+ +.|+ -..|..|...|.+. |+.++|.+.|++. .+.|+ ..++..+...++. .|+
T Consensus 179 l~~A~a~lerAle---LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 179 VHAAVMMLERACD---LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHH---HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHHH---hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 3444444444443 3454 34566666666663 7777777777776 55552 4555566666655 377
Q ss_pred hhHHHHHHHHHhccCCC
Q 004369 573 MELGFYAAEQLLKLKPK 589 (758)
Q Consensus 573 ~~~a~~~~~~~~~~~p~ 589 (758)
.+++.+.++++++..|.
T Consensus 256 ~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 256 RAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHHcCCCC
Confidence 77777777777776665
No 239
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=89.92 E-value=7.7 Score=32.34 Aligned_cols=85 Identities=12% Similarity=0.019 Sum_probs=51.2
Q ss_pred HhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHH
Q 004369 434 KKCGRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFE 513 (758)
Q Consensus 434 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 513 (758)
.+||++......+-.+.. +....+.-+..+...|+-++-.+++.++.. +.+|++.....+..||.+.|+..++.+++.
T Consensus 72 s~C~NlKrVi~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~ 149 (172)
T 1wy6_A 72 DKCQNLKSVVECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLI 149 (172)
T ss_dssp GGCSCTHHHHHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HhhhcHHHHHHHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHH
Confidence 356666666665555432 223344455666667777777777666433 245666666667777777777777777777
Q ss_pred HhhhhcCC
Q 004369 514 MMQKEYKI 521 (758)
Q Consensus 514 ~~~~~~~~ 521 (758)
++.++ |+
T Consensus 150 ~AC~k-G~ 156 (172)
T 1wy6_A 150 EACKK-GE 156 (172)
T ss_dssp HHHHT-TC
T ss_pred HHHHh-hh
Confidence 76663 54
No 240
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=89.45 E-value=2.2 Score=36.40 Aligned_cols=105 Identities=10% Similarity=0.061 Sum_probs=71.9
Q ss_pred CHHHHHHHHHHHhccccH------HHHHHHHHHhhhhcCCCCCHH-HHHHHHH------HHHHcCCHHHHHHHHHHc---
Q 004369 488 NQVTFVGALAACSNAGMV------YEALGYFEMMQKEYKIKPVMD-HYMCLID------MFVRLGCIEEAFDFIKKM--- 551 (758)
Q Consensus 488 ~~~t~~~ll~a~~~~g~~------~~a~~~~~~~~~~~~~~p~~~-~~~~li~------~~~~~g~~~~A~~~~~~m--- 551 (758)
|..+|-..+.-..+.|+. ++.+++|+++.. .++|+.. .|...|. .+...++.++|.++|+.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 355666666666666777 788888888876 5666531 1111111 123447888899999887
Q ss_pred CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHH
Q 004369 552 DFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYA 595 (758)
Q Consensus 552 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 595 (758)
.-+- ..+|-....--.++|+++.|.+++.+++.+.|.+.....
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le 132 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLE 132 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHH
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHH
Confidence 2122 777887777778899999999999999999887654443
No 241
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=87.68 E-value=1.1 Score=38.91 Aligned_cols=125 Identities=10% Similarity=0.049 Sum_probs=65.2
Q ss_pred cCCCCCHH--HHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHc--
Q 004369 483 AGVRPNQV--TFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVM-------DHYMCLIDMFVRLGCIEEAFDFIKKM-- 551 (758)
Q Consensus 483 ~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~m-- 551 (758)
.|+.|... ++..-+..+...|.++.|+-+.+.+....+.+|+. .++..+.+++...|++..|...|++.
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 45556533 34444566677778888777776655433333432 34566677788888888888777764
Q ss_pred --CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369 552 --DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTRE 619 (758)
Q Consensus 552 --~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 619 (758)
..-| +..+..++. ...... .-..+ +.+.+.-..++.+|.+.|++++|..+.+.+..
T Consensus 92 ~~k~l~k~~s~~~~~~----~~ss~p-------~s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 92 QKKALSKTSKVRPSTG----NSASTP-------QSQCL-PSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHHCC-------------------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred HHHHHhcCCCcccccc----ccCCCc-------ccccc-cchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 1111 111111110 000000 00111 23446677899999999999999999887643
No 242
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=87.17 E-value=24 Score=34.74 Aligned_cols=135 Identities=14% Similarity=0.143 Sum_probs=86.3
Q ss_pred HHHHHHHHhhcCCChHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHH----HHHHHcCCCCChhhHHHHHHHhc
Q 004369 111 VMTFLVNVYGKCGNMEEAQKVFDNLPRINVVSWTSLISGYVQNSQPELAIHVF----LDMLEAGNYPTNVTLGTALTACS 186 (758)
Q Consensus 111 ~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~~~~ 186 (758)
.+.++..-|.+.+++++|.+++-. -...+.++|+...|-++- +-..+.++++|..+...++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 455667778889999999987532 233456677777666655 44556788899888888888777
Q ss_pred ccCChH-----HHHHHHHHHHHhC--CCCChhHHHHHHHHHhhcCChHHHHHHHhccCCCCcchHHHHHHHHhhCCC
Q 004369 187 SLESIR-----LGKQIHAYVVKYQ--TEDDTSVGNSLCSLYSTCGSLNSAIKAFNRIREKNVMSWTTVIGACGENGE 256 (758)
Q Consensus 187 ~~~~~~-----~a~~~~~~~~~~g--~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~ 256 (758)
....-+ ...+...+-.+.| ..-|+.....+...|.+.+++.+|+.-|-.-..+.+..+..++.-+.+.+.
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~ 182 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDE 182 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSC
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcC
Confidence 665322 2223333444444 345677788888889999999999888843222223556555544444443
No 243
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=85.95 E-value=27 Score=34.11 Aligned_cols=133 Identities=10% Similarity=0.092 Sum_probs=84.7
Q ss_pred HHHHHHHHhhcCCChHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHH----HHHHHHcCCCCChhhHHHHHHHhc
Q 004369 111 VMTFLVNVYGKCGNMEEAQKVFDNLPRINVVSWTSLISGYVQNSQPELAIHV----FLDMLEAGNYPTNVTLGTALTACS 186 (758)
Q Consensus 111 ~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~~~~ 186 (758)
.+.++..-|.+.+++++|.+++.. -...+.++|+...|-++ .+-..+.++.++......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 456677788889999999887533 23345667777766665 444456688888888887777765
Q ss_pred ccCC-----hHHHHHHHHHHHHhCC--CCChhHHHHHHHHHhhcCChHHHHHHHhccCCCCcchHHHHHHHHhhC
Q 004369 187 SLES-----IRLGKQIHAYVVKYQT--EDDTSVGNSLCSLYSTCGSLNSAIKAFNRIREKNVMSWTTVIGACGEN 254 (758)
Q Consensus 187 ~~~~-----~~~a~~~~~~~~~~g~--~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~ 254 (758)
.... .....+...+-.+.|- .-|+.....+...|.+.|++.+|+.-|-.-...|...+..++.-+.+.
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~ 178 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQ 178 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHh
Confidence 5331 2223333444444432 246778888889999999999998877532222455555555444443
No 244
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=85.21 E-value=31 Score=34.04 Aligned_cols=110 Identities=15% Similarity=0.168 Sum_probs=74.2
Q ss_pred HHHHHHhhcCChHHHHHHHhccCCCCcchHHHHHHHHhhCCChhhHHHHH----HHHHHCCCCCChhhHHHHHHHHcccC
Q 004369 215 SLCSLYSTCGSLNSAIKAFNRIREKNVMSWTTVIGACGENGEAVQGLRFF----SKMLSEGIQPNEFTLTSISSVCGTML 290 (758)
Q Consensus 215 ~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~----~~m~~~g~~p~~~t~~~ll~~~~~~~ 290 (758)
++..=|.+.+++++|.+++-.- ...+.+.|+...|-++- +-+.+.++++|..+...++..+....
T Consensus 40 Ti~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~ 108 (336)
T 3lpz_A 40 LVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQ 108 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSC
T ss_pred HHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence 3445588889999998876432 33466778776666655 44556788899888888888777665
Q ss_pred ChH-HHHHHHH----HHHHhC--CCCchhHHHHHHHHHHhcCCHHHHHHHHc
Q 004369 291 SLR-VGAQVHS----LGIKLG--YASNLRVRNSIMYLYLKCGLVDEAQKLFD 335 (758)
Q Consensus 291 ~~~-~a~~~~~----~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 335 (758)
.-+ .-..+.. +-.+.| -.-|......+...|.+.+++.+|+..|-
T Consensus 109 ~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i 160 (336)
T 3lpz_A 109 PGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV 160 (336)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 422 1122333 333444 33467788889999999999999998884
No 245
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=85.21 E-value=11 Score=29.34 Aligned_cols=87 Identities=15% Similarity=0.116 Sum_probs=58.0
Q ss_pred chHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004369 403 ALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQALQLFEDMLL 482 (758)
Q Consensus 403 ~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 482 (758)
.-++|..|-+.+...+. ...+--.-+..+...|++++|..+.+....||+..|-+|-. .+.|..+++..-+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 34566666666655543 33332333445678899999999999999999999988754 466777777777777766
Q ss_pred cCCCCCHHHHHH
Q 004369 483 AGVRPNQVTFVG 494 (758)
Q Consensus 483 ~g~~p~~~t~~~ 494 (758)
+| .|....|..
T Consensus 98 sg-~p~~q~Fa~ 108 (116)
T 2p58_C 98 SQ-DPRIQTFVN 108 (116)
T ss_dssp CC-CHHHHHHHH
T ss_pred CC-CHHHHHHHH
Confidence 65 444444443
No 246
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=84.89 E-value=5.1 Score=31.10 Aligned_cols=88 Identities=13% Similarity=0.093 Sum_probs=65.4
Q ss_pred cCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHH
Q 004369 86 NRKSLSNAEIIHAHIVKTGSHQDFFVMTFLVNVYGKCGNMEEAQKVFDNLPRINVVSWTSLISGYVQNSQPELAIHVFLD 165 (758)
Q Consensus 86 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 165 (758)
.....++|..|-+.+...+. ...+.-.-+..+...|++++|..+.+.+..||..+|-+|-.+ +.|..+++..-+.+
T Consensus 18 G~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~ 93 (115)
T 2uwj_G 18 GQHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCEW--HLGLGAALDRRLAG 93 (115)
T ss_dssp TTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHH--HTTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHH
Confidence 34467888889888887663 444444445567889999999999999999999999888764 77888888777777
Q ss_pred HHHcCCCCChhhH
Q 004369 166 MLEAGNYPTNVTL 178 (758)
Q Consensus 166 m~~~g~~p~~~t~ 178 (758)
+...| .|....|
T Consensus 94 la~sg-~p~~q~F 105 (115)
T 2uwj_G 94 LGGSS-DPALADF 105 (115)
T ss_dssp HHTCS-SHHHHHH
T ss_pred HHhCC-CHHHHHH
Confidence 77665 3444444
No 247
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=84.42 E-value=12 Score=31.64 Aligned_cols=73 Identities=5% Similarity=0.090 Sum_probs=48.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHH---HHHHHHHHc-CCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhH
Q 004369 522 KPVMDHYMCLIDMFVRLGCIE---EAFDFIKKM-DFEP--NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESY 594 (758)
Q Consensus 522 ~p~~~~~~~li~~~~~~g~~~---~A~~~~~~m-~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 594 (758)
.|+..+--.+..++.+..+.+ +++.+++.. ...| .....-.|.-++.+.|++++|.+..+.+++.+|+|..+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~ 114 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 114 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 355555555566666666443 455555555 2233 233455677789999999999999999999999985443
No 248
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=84.32 E-value=10 Score=29.40 Aligned_cols=87 Identities=14% Similarity=0.094 Sum_probs=59.5
Q ss_pred chHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004369 403 ALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQALQLFEDMLL 482 (758)
Q Consensus 403 ~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 482 (758)
.-++|..|-+.+...+. ...+--.-+..+...|++++|..+.+....||+..|-+|-. .+.|..+++..-+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 34566666666655543 33333333445678899999999999999999999988754 567888888888877777
Q ss_pred cCCCCCHHHHHH
Q 004369 483 AGVRPNQVTFVG 494 (758)
Q Consensus 483 ~g~~p~~~t~~~ 494 (758)
+| .|....|..
T Consensus 97 sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 97 SS-DPALADFAA 107 (115)
T ss_dssp CS-SHHHHHHHH
T ss_pred CC-CHHHHHHHH
Confidence 65 454444443
No 249
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=83.80 E-value=12 Score=29.10 Aligned_cols=88 Identities=13% Similarity=0.075 Sum_probs=64.0
Q ss_pred cCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHH
Q 004369 86 NRKSLSNAEIIHAHIVKTGSHQDFFVMTFLVNVYGKCGNMEEAQKVFDNLPRINVVSWTSLISGYVQNSQPELAIHVFLD 165 (758)
Q Consensus 86 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 165 (758)
.....++|..|-+.+...+. ...+.-.-+..+...|++++|..+.+.+.-||..+|-+|-.+ +.|..+++..-+.+
T Consensus 19 G~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~ 94 (116)
T 2p58_C 19 GNHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNR 94 (116)
T ss_dssp TTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHH
Confidence 34467889999888887663 444444445567889999999999999999999999888764 56777777776767
Q ss_pred HHHcCCCCChhhH
Q 004369 166 MLEAGNYPTNVTL 178 (758)
Q Consensus 166 m~~~g~~p~~~t~ 178 (758)
+...| .|....|
T Consensus 95 la~sg-~p~~q~F 106 (116)
T 2p58_C 95 LARSQ-DPRIQTF 106 (116)
T ss_dssp HTTCC-CHHHHHH
T ss_pred HHhCC-CHHHHHH
Confidence 76654 3333333
No 250
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=83.30 E-value=11 Score=31.28 Aligned_cols=71 Identities=6% Similarity=0.111 Sum_probs=45.1
Q ss_pred CCHHHHHHHHHHHHHcCCHH---HHHHHHHHc-CCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchh
Q 004369 523 PVMDHYMCLIDMFVRLGCIE---EAFDFIKKM-DFEP--NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCES 593 (758)
Q Consensus 523 p~~~~~~~li~~~~~~g~~~---~A~~~~~~m-~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 593 (758)
|+..+--.+..++.+....+ +++.++++. ...| ....+-.|.-|+.+.|+++.|.+..+.+++.+|+|..+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 44444444555555555432 455555554 2223 23446667778888999999999999999999987544
No 251
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=81.85 E-value=4.6 Score=31.59 Aligned_cols=63 Identities=16% Similarity=0.204 Sum_probs=50.2
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHH
Q 004369 469 LSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLID 533 (758)
Q Consensus 469 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 533 (758)
+.-+...-++.+....+-|+.....+.|.||.+.+++..|.++|+.++.+. .+...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~--~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCchhhHHHHHH
Confidence 455666667777777889999999999999999999999999999987643 344556777765
No 252
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=80.81 E-value=44 Score=36.61 Aligned_cols=74 Identities=9% Similarity=-0.045 Sum_probs=40.5
Q ss_pred CCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHh---cCCHHHH
Q 004369 366 HNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKK---CGRIERA 442 (758)
Q Consensus 366 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~---~g~~~~A 442 (758)
.|+++.|++.+... ...|.+.+...+.-+.-.+- ...++..- .+ .| ..-+..||..|.+ ..+..+|
T Consensus 307 tgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~---~~~lls~~--~~-~~-~lN~arLI~~Yt~~F~~td~~~A 375 (661)
T 2qx5_A 307 SGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI---DSSTRLTK--KP-KR-DIRFANILANYTKSFRYSDPRVA 375 (661)
T ss_dssp TTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTTTTTCHHHH
T ss_pred HhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC---CCcccccC--CC-cc-cccHHHHHHHHHHHhhcCCHHHH
Confidence 99999999988754 35677777777766544432 11111110 00 11 2225567777765 5778888
Q ss_pred HHHHHhcC
Q 004369 443 SRVFVEMS 450 (758)
Q Consensus 443 ~~~~~~~~ 450 (758)
.+.|--+.
T Consensus 376 l~Y~~li~ 383 (661)
T 2qx5_A 376 VEYLVLIT 383 (661)
T ss_dssp HHHHHGGG
T ss_pred HHHHHHHh
Confidence 88776654
No 253
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=80.80 E-value=8.9 Score=33.34 Aligned_cols=27 Identities=11% Similarity=0.155 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHcC
Q 004369 526 DHYMCLIDMFVRLGCIEEAFDFIKKMD 552 (758)
Q Consensus 526 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 552 (758)
+.---+..+|.+.|+.++|+.+++..+
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 333335555666666666666666553
No 254
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=80.69 E-value=8.2 Score=43.05 Aligned_cols=53 Identities=19% Similarity=0.091 Sum_probs=30.7
Q ss_pred HhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCC
Q 004369 499 CSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKMDF 553 (758)
Q Consensus 499 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 553 (758)
|...|+++-|+++-++... -.+.+-.+|..|...|...|+++.|+-.++.+|.
T Consensus 347 Ll~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNScPm 399 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSMPR 399 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred HhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcCCC
Confidence 3345666666666666553 1222355666666666666666666666666653
No 255
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=79.93 E-value=49 Score=33.59 Aligned_cols=57 Identities=12% Similarity=0.029 Sum_probs=26.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHhccccHHHHHHHHHHhh
Q 004369 460 MITGFANHSLSHQALQLFEDMLLAGVRPN-----QVTFVGALAACSNAGMVYEALGYFEMMQ 516 (758)
Q Consensus 460 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 516 (758)
++..|...|++.+|++++.++.+.=-+.| ...+..-+..|...+++.++...+....
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 45555555556565555555554211111 1122333334445555555555555443
No 256
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=79.60 E-value=27 Score=33.98 Aligned_cols=67 Identities=18% Similarity=0.181 Sum_probs=47.8
Q ss_pred CHHHHHHHHHHc---CCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHH
Q 004369 540 CIEEAFDFIKKM---DFEPN--EVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVK 614 (758)
Q Consensus 540 ~~~~A~~~~~~m---~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 614 (758)
+..+.+++---+ +++|. ..++.+-+..+.+++|+..|...+++++++.|... ..++|+++.
T Consensus 185 ~~kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~a~qArkil 250 (325)
T 3mv2_A 185 NTVRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP--------------RAEQARKIK 250 (325)
T ss_dssp CHHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH--------------HHHHHHHHH
T ss_pred cHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHH
Confidence 344455554433 67763 45678888899999999999999999999998532 345577777
Q ss_pred HHhhhC
Q 004369 615 NLTREE 620 (758)
Q Consensus 615 ~~m~~~ 620 (758)
......
T Consensus 251 ~~ce~~ 256 (325)
T 3mv2_A 251 NKADSM 256 (325)
T ss_dssp HHHHTS
T ss_pred HHHhcC
Confidence 666543
No 257
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=79.39 E-value=3.7 Score=42.13 Aligned_cols=59 Identities=12% Similarity=0.027 Sum_probs=41.2
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhh
Q 004369 561 SVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTRE 619 (758)
Q Consensus 561 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 619 (758)
..++..+...|+.+++...++.++..+|-+...+..|..+|.+.|+..+|.+.++..++
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555666677777777777777777777777777777777777777777777666543
No 258
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=77.79 E-value=1e+02 Score=35.18 Aligned_cols=114 Identities=11% Similarity=0.102 Sum_probs=57.1
Q ss_pred CCChhHHHHHHHHhHhCCCCCCHHHHH---HHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHH
Q 004369 366 HNGGTEALSIFSKLNSSGMKPDLYTFS---SILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERA 442 (758)
Q Consensus 366 ~g~~~~A~~l~~~m~~~g~~p~~~t~~---~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A 442 (758)
.|+.+.+-.+.+.+... ..| ..-|. .+.-+|+..|+.....+++..+.+.. ..++.-...+.-+..-.|+.+.+
T Consensus 537 ~g~~e~~~~li~~L~~~-~dp-~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v 613 (963)
T 4ady_A 537 YGRQELADDLITKMLAS-DES-LLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTV 613 (963)
T ss_dssp TTCGGGGHHHHHHHHHC-SCH-HHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSH
T ss_pred CCChHHHHHHHHHHHhC-CCH-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHH
Confidence 66777777777766653 112 22232 23346677777777776777666532 22332222222233335555556
Q ss_pred HHHHHhcC-CCChhHH--HHHHHHHHhcCCH-HHHHHHHHHHHH
Q 004369 443 SRVFVEMS-TRTLISW--TSMITGFANHSLS-HQALQLFEDMLL 482 (758)
Q Consensus 443 ~~~~~~~~-~~~~~~~--~~li~~~~~~g~~-~~A~~~~~~m~~ 482 (758)
.++++.+. ..|...- -++.-|....|.. .+|+.++..+..
T Consensus 614 ~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 614 PRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 66665443 2233222 2233333334443 567777777754
No 259
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=77.47 E-value=14 Score=29.00 Aligned_cols=65 Identities=6% Similarity=-0.016 Sum_probs=47.9
Q ss_pred CCchhHHHHHHHHHHHcCCCCCcchHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 004369 52 EPVRSLGFQEALSVLTEGPKVQTSSYVSLLQECVNRKSLSNAEIIHAHIVKTGSHQDFFVMTFLVN 117 (758)
Q Consensus 52 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 117 (758)
.-+.-+...-+..+...+.-|++....+.|++|.+.+++..|.++++-+...- .....+|..++.
T Consensus 23 ~iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 23 DIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp TCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred CccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 33444555666677777888999999999999999999999999998876432 233456666654
No 260
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=77.31 E-value=12 Score=35.45 Aligned_cols=50 Identities=14% Similarity=0.014 Sum_probs=21.7
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHh
Q 004369 465 ANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMM 515 (758)
Q Consensus 465 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 515 (758)
.+.|..++|++....-.+.. +-|...-..++.-+|-.|+++.|.+-++..
T Consensus 8 l~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~ 57 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQS 57 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34445555555444444431 122333333444444455555554444444
No 261
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=77.09 E-value=10 Score=38.85 Aligned_cols=66 Identities=11% Similarity=0.103 Sum_probs=37.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhh----hcCCCCCH
Q 004369 459 SMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQK----EYKIKPVM 525 (758)
Q Consensus 459 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~p~~ 525 (758)
.++..+...|++++|+..++.+... -+-+...+..++.++.+.|+..+|.+.|+...+ +.|+.|..
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~ 245 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 245 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 3455555666666666666666543 122455666666666666666666666655433 23555544
No 262
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=76.93 E-value=1.1e+02 Score=35.00 Aligned_cols=246 Identities=10% Similarity=0.008 Sum_probs=122.9
Q ss_pred HHhcCCHHHHHHHHccCCCC----Cee--echhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCC--CC---CH-
Q 004369 321 YLKCGLVDEAQKLFDGMSHV----NLV--TWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGM--KP---DL- 388 (758)
Q Consensus 321 ~~~~g~~~~A~~~~~~m~~~----~~~--~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~--~p---~~- 388 (758)
....|+.+++..+++.-... +.. .-..+.-|... .|..++++.++.......- .- +.
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~-----------ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ 452 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIY-----------AGFGRDTTDYLKNIIVENSGTSGDEDVDV 452 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHT-----------TTTTHHHHHHHHHHHHHHSSCCSCHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhc-----------CCCcHHHHHHHHHHHcCccccccccccHH
Confidence 45567778888888776542 111 11112223334 6666678887777654311 00 11
Q ss_pred HHHH---HHHHHHhcccchHHHHHHHHHHHHcCCCChH--HHHhHHhhhHHhcCCHHHHHHHHHhcCC--CC-hhHHHHH
Q 004369 389 YTFS---SILTICSRLVALEQGEQIHALTLKTGFLSDV--VVGTALVNMYKKCGRIERASRVFVEMST--RT-LISWTSM 460 (758)
Q Consensus 389 ~t~~---~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~--~~~~~Li~~y~~~g~~~~A~~~~~~~~~--~~-~~~~~~l 460 (758)
.... .+--++...++- ++...+..++...- ... ...-+|.-.|.-.|+-+....++..+.+ .+ +.-.-++
T Consensus 453 ir~gAaLGLGla~~GS~~e-ev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aal 530 (963)
T 4ady_A 453 LLHGASLGIGLAAMGSANI-EVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAV 530 (963)
T ss_dssp HHHHHHHHHHHHSTTCCCH-HHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCH-HHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 1111 111222333333 33444444433221 111 1222344445566777777777765432 22 2223334
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHH---HHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH
Q 004369 461 ITGFANHSLSHQALQLFEDMLLAGVRPN-QVTFV---GALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFV 536 (758)
Q Consensus 461 i~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~---~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 536 (758)
.-|+...|+.+.+..+.+.+... .| ..-|. .+.-+|+..|+.....++++.+.++ ...++.-...+.-++.
T Consensus 531 gLGll~~g~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI 605 (963)
T 4ady_A 531 GLALINYGRQELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFV 605 (963)
T ss_dssp HHHHHTTTCGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHH
T ss_pred HHHhhhCCChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhh
Confidence 44555789998888888888763 23 23333 3344778889988888899888763 2333333333333444
Q ss_pred HcCCHHHHHHHHHHcCCCCCHHHH--HHHHHHHHHcCCh-hHHHHHHHHHh
Q 004369 537 RLGCIEEAFDFIKKMDFEPNEVIW--SVFIAGCRRHGNM-ELGFYAAEQLL 584 (758)
Q Consensus 537 ~~g~~~~A~~~~~~m~~~p~~~~~--~~ll~~~~~~g~~-~~a~~~~~~~~ 584 (758)
..|+.+.+.++++.+....|..+- ..+.-+....|+. ..+...+..+.
T Consensus 606 ~~g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 606 LLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp TSSSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 466665566666544112233332 2222233333332 45555666654
No 263
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=75.86 E-value=62 Score=31.60 Aligned_cols=167 Identities=9% Similarity=0.079 Sum_probs=97.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHccCCCCCeeechhHHHHHhhhchhhhchhhcCCChhHHHHH----HHHhHhCCCCCCHHH
Q 004369 315 NSIMYLYLKCGLVDEAQKLFDGMSHVNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSI----FSKLNSSGMKPDLYT 390 (758)
Q Consensus 315 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l----~~~m~~~g~~p~~~t 390 (758)
.++..=|.+.+++++|.+++..- ...+.+ .|+...|-++ .+-..+.+++++...
T Consensus 37 Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~-----------~~Q~~sa~DLa~llvev~~~~~~~~~~~~ 94 (312)
T 2wpv_A 37 RTIANRYVRSKSYEHAIELISQG-----------ALSFLK-----------AKQGGSGTDLIFYLLEVYDLAEVKVDDIS 94 (312)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHH-----------TTCHHHHHHHHHHHHHHHHHTTCCCSHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHH-----------CCCcchHHHHHHHHHHHHHHcCCCCCHHH
Confidence 44555577778888888775432 112233 6665555554 344445678888888
Q ss_pred HHHHHHHHhcccch-----HHHHHHHHHHHHcC--CCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCCCChhHHHHHHHH
Q 004369 391 FSSILTICSRLVAL-----EQGEQIHALTLKTG--FLSDVVVGTALVNMYKKCGRIERASRVFVEMSTRTLISWTSMITG 463 (758)
Q Consensus 391 ~~~ll~a~~~~~~~-----~~a~~i~~~~~~~~--~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 463 (758)
...++..+.....- .-..+......+.| ...|+.....+...|.+.|++.+|+.-|-.-...|...+..|+.-
T Consensus 95 ~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~ 174 (312)
T 2wpv_A 95 VARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWD 174 (312)
T ss_dssp HHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 77777766553321 22222233333332 234788888999999999999999998763332345555555554
Q ss_pred HHhc---CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhh
Q 004369 464 FANH---SLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKE 518 (758)
Q Consensus 464 ~~~~---g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 518 (758)
+... |...++-- ..-.+++ -|.-.|++..|..+|+...+.
T Consensus 175 w~~~~~~~~~~e~dl--------------f~~RaVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 175 WLCQVDDIEDSTVAE--------------FFSRLVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHHTTCCCHHHHHH--------------HHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCcchHHH--------------HHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 4443 44433221 1122223 344568888888888876543
No 264
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.93 E-value=73 Score=33.03 Aligned_cols=186 Identities=11% Similarity=0.103 Sum_probs=120.9
Q ss_pred CCChhHHHHHHHHhHh-----CCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHc-CCCChHH--HHhHHhhhHHhcC
Q 004369 366 HNGGTEALSIFSKLNS-----SGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKT-GFLSDVV--VGTALVNMYKKCG 437 (758)
Q Consensus 366 ~g~~~~A~~l~~~m~~-----~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-~~~~~~~--~~~~Li~~y~~~g 437 (758)
.|++++|++.+..+.+ ............++..|...++++...+....+.+. |...... ..+.+++......
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence 5788899988876654 234556677888999999999999887777666543 3322221 1222333333333
Q ss_pred C--HHHHHHHHHhcCC---CC-------hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHHh
Q 004369 438 R--IERASRVFVEMST---RT-------LISWTSMITGFANHSLSHQALQLFEDMLLA--GVRPN---QVTFVGALAACS 500 (758)
Q Consensus 438 ~--~~~A~~~~~~~~~---~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~---~~t~~~ll~a~~ 500 (758)
. .+.-..+.+.... .- ......|...|...|++.+|..++.++... |..+. ...+...+..|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 2 2223334443331 11 123456778889999999999999998753 22222 235666677899
Q ss_pred ccccHHHHHHHHHHhhhh-cCC--CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 004369 501 NAGMVYEALGYFEMMQKE-YKI--KPV--MDHYMCLIDMFVRLGCIEEAFDFIKKM 551 (758)
Q Consensus 501 ~~g~~~~a~~~~~~~~~~-~~~--~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m 551 (758)
..+++.+|..++.++... ... .|+ ...|.+++..+...+++.+|-..|.+.
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 999999999999887531 122 222 356788889999999999998877765
No 265
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=74.62 E-value=16 Score=43.45 Aligned_cols=63 Identities=11% Similarity=-0.015 Sum_probs=38.1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhccCC-CCch----hHHHHHHHhhhCCCchhHHHHHHHhhhCCC
Q 004369 560 WSVFIAGCRRHGNMELGFYAAEQLLKLKP-KDCE----SYAMLLDIFVSAGRWEDVAVVKNLTREEKL 622 (758)
Q Consensus 560 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p-~~~~----~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 622 (758)
|..++..+.++|.++.+.+..+.+++..+ ++.. .|..+.+.+...|++++|-..+-.+.+...
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~ 969 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL 969 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH
Confidence 55566666667777777777766666443 2221 345556666677777777666666555433
No 266
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=73.62 E-value=9.6 Score=31.59 Aligned_cols=74 Identities=15% Similarity=0.203 Sum_probs=55.6
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 004369 469 LSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFI 548 (758)
Q Consensus 469 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 548 (758)
+.-+...-++.+....+-|+.....+.|.+|.+.+++..|.++|+.++.+ ..+....|..+++ |-.-++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lq---------ElkPtl 136 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ---------ELRPTL 136 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH---------HHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHH---------HHhhHH
Confidence 34455666666777788999999999999999999999999999999764 4445667877765 444555
Q ss_pred HHcCC
Q 004369 549 KKMDF 553 (758)
Q Consensus 549 ~~m~~ 553 (758)
+++|+
T Consensus 137 ~ELGI 141 (152)
T 2y69_E 137 NELGI 141 (152)
T ss_dssp HHHTC
T ss_pred HHhCC
Confidence 55543
No 267
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=71.13 E-value=42 Score=31.73 Aligned_cols=46 Identities=15% Similarity=0.117 Sum_probs=24.7
Q ss_pred CChHHHHHHHHHHHHhCCCCchh--HHHHHHHHHHhcCCHHHHHHHHc
Q 004369 290 LSLRVGAQVHSLGIKLGYASNLR--VRNSIMYLYLKCGLVDEAQKLFD 335 (758)
Q Consensus 290 ~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~ 335 (758)
+......++...+.+.|..++.. ...+.+...++.|+.+-+..+++
T Consensus 193 ~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 193 SDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp SCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred cccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 33333445555555665444321 12234455566778777777776
No 268
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=66.63 E-value=8.2 Score=36.58 Aligned_cols=56 Identities=21% Similarity=0.256 Sum_probs=33.7
Q ss_pred HHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCC
Q 004369 535 FVRLGCIEEAFDFIKKM-DFEP-NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKD 590 (758)
Q Consensus 535 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 590 (758)
+.+.|.+++|++....- .-.| |...-..|+.-++..|+++.|..-++.+.+++|+.
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 44566666666655443 4444 45555556666666666666666666666666653
No 269
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=65.31 E-value=31 Score=28.68 Aligned_cols=63 Identities=6% Similarity=-0.018 Sum_probs=40.5
Q ss_pred chhHHHHHHHHHHHcCCCCCcchHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 004369 54 VRSLGFQEALSVLTEGPKVQTSSYVSLLQECVNRKSLSNAEIIHAHIVKTGSHQDFFVMTFLVN 117 (758)
Q Consensus 54 ~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 117 (758)
|.-+.-.-+..+...+.-|++....+.|++|.+.+++..|.++++-+...- .+...+|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 333444445555566777788888888888888888888888887765332 233445655554
No 270
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=65.24 E-value=1e+02 Score=36.58 Aligned_cols=144 Identities=13% Similarity=0.038 Sum_probs=94.2
Q ss_pred HHHHHHhcccchHHHHHHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCCC--------------------
Q 004369 393 SILTICSRLVALEQGEQIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMSTR-------------------- 452 (758)
Q Consensus 393 ~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~-------------------- 452 (758)
.++..+...+..+.+.++.... +.+....-.+..+|..+|++++|.+.|++....
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 3455566666666666554332 223344445677889999999999999876411
Q ss_pred ------ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHhccccHHHHHHHHHHhhhhcCCC
Q 004369 453 ------TLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQ----VTFVGALAACSNAGMVYEALGYFEMMQKEYKIK 522 (758)
Q Consensus 453 ------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 522 (758)
-..-|.-++..|.++|.++.++++-+...+..-.-+. ..|..+..++...|++++|...+-.+... .
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~-~-- 968 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT-P-- 968 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS-S--
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH-H--
Confidence 0013566778888889999998888777764322121 14677888888999999998888766431 2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHH
Q 004369 523 PVMDHYMCLIDMFVRLGCIEEA 544 (758)
Q Consensus 523 p~~~~~~~li~~~~~~g~~~~A 544 (758)
--......||..++..|.+++-
T Consensus 969 ~r~~cLr~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 969 LKKSCLLDFVNQLTKQGKINQL 990 (1139)
T ss_dssp SCHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHHHHhCCChhhh
Confidence 2245666777777777665443
No 271
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=62.78 E-value=88 Score=29.34 Aligned_cols=19 Identities=21% Similarity=0.188 Sum_probs=10.7
Q ss_pred HHHHHhcCCHHHHHHHHcc
Q 004369 318 MYLYLKCGLVDEAQKLFDG 336 (758)
Q Consensus 318 i~~~~~~g~~~~A~~~~~~ 336 (758)
+...++.|+.+-+..+++.
T Consensus 152 L~~A~~~~~~~~v~~Ll~~ 170 (285)
T 1wdy_A 152 LMDAAEKGHVEVLKILLDE 170 (285)
T ss_dssp HHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHh
Confidence 3344455666666666654
No 272
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=57.98 E-value=1e+02 Score=27.32 Aligned_cols=9 Identities=11% Similarity=0.150 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 004369 313 VRNSIMYLY 321 (758)
Q Consensus 313 ~~~~li~~~ 321 (758)
+....+.+.
T Consensus 185 vr~~A~~aL 193 (201)
T 3ltj_A 185 ARKVAVNYL 193 (201)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 273
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=57.90 E-value=1e+02 Score=27.31 Aligned_cols=41 Identities=10% Similarity=0.178 Sum_probs=16.1
Q ss_pred HHHHHhhcCChHHHHHHHhccCCCCcchHHHHHHHHhhCCC
Q 004369 216 LCSLYSTCGSLNSAIKAFNRIREKNVMSWTTVIGACGENGE 256 (758)
Q Consensus 216 Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~ 256 (758)
-+....+.|..+....+.+.+..+|...-...+.++.+.|.
T Consensus 34 A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~ 74 (201)
T 3ltj_A 34 AAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGD 74 (201)
T ss_dssp HHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC
Confidence 33333344433333333333333444333333444444443
No 274
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=57.20 E-value=1.8e+02 Score=30.01 Aligned_cols=184 Identities=10% Similarity=0.067 Sum_probs=101.6
Q ss_pred cchHHHHHHHHHHHH-----cCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCCC-C--hhHHHHHHHHH----HhcCC
Q 004369 402 VALEQGEQIHALTLK-----TGFLSDVVVGTALVNMYKKCGRIERASRVFVEMSTR-T--LISWTSMITGF----ANHSL 469 (758)
Q Consensus 402 ~~~~~a~~i~~~~~~-----~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~-~--~~~~~~li~~~----~~~g~ 469 (758)
++++.|.+.+-.+.+ ........+...++..+.+.|+++...+.+.-+.++ . -..-..|+..+ .....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 455555555544443 223445667777888888888888876665544422 1 12222333322 22232
Q ss_pred HHHH--HHHHHHHHH--cC-CCC---CHHHHHHHHHHHhccccHHHHHHHHHHhhhh-cCCCCC---HHHHHHHHHHHHH
Q 004369 470 SHQA--LQLFEDMLL--AG-VRP---NQVTFVGALAACSNAGMVYEALGYFEMMQKE-YKIKPV---MDHYMCLIDMFVR 537 (758)
Q Consensus 470 ~~~A--~~~~~~m~~--~g-~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~-~~~~p~---~~~~~~li~~~~~ 537 (758)
.+.. +.+.+.... .| +-- ....-..|...+...|++.+|..++..+..+ ++..+. ++.+..-+..|..
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~ 189 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL 189 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 2221 112111110 11 111 1122345566777888888888888887543 233222 4567777888888
Q ss_pred cCCHHHHHHHHHHc-----CCC--CC--HHHHHHHHHHHHHcCChhHHHHHHHHHhc
Q 004369 538 LGCIEEAFDFIKKM-----DFE--PN--EVIWSVFIAGCRRHGNMELGFYAAEQLLK 585 (758)
Q Consensus 538 ~g~~~~A~~~~~~m-----~~~--p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 585 (758)
.+++.+|..+++++ ... |+ ...+...+..+...+++.+|-+.|..+++
T Consensus 190 ~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 190 KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 88888888888775 122 22 12345555666667788777777666654
No 275
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=55.38 E-value=2.3e+02 Score=30.70 Aligned_cols=351 Identities=10% Similarity=-0.014 Sum_probs=169.7
Q ss_pred HHHHHHhhcCChHHHHHHHhccCCCCcchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHcccCChHH
Q 004369 215 SLCSLYSTCGSLNSAIKAFNRIREKNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFTLTSISSVCGTMLSLRV 294 (758)
Q Consensus 215 ~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 294 (758)
.-+..+.+.+++.....++.. +..+...--....+....|+..+|.....++-..|- ........++..+.+.|.+..
T Consensus 77 ~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~~~~~g~lt~ 154 (618)
T 1qsa_A 77 RFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLFSVWRASGKQDP 154 (618)
T ss_dssp HHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHCCCCCH
Confidence 344555667777777776665 322333333445566677887777777777665542 223344455555544333211
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCC---------------------------CCeeechh
Q 004369 295 GAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDGMSH---------------------------VNLVTWNA 347 (758)
Q Consensus 295 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---------------------------~~~~~~~~ 347 (758)
..++.- ++.....|+...|..+...+.. ++...-..
T Consensus 155 ----------------~~~~~R-~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 217 (618)
T 1qsa_A 155 ----------------LAYLER-IRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTGATDFTRQM 217 (618)
T ss_dssp ----------------HHHHHH-HHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHH
T ss_pred ----------------HHHHHH-HHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHhccCCChhhHHH
Confidence 111111 1222233344444444333311 01000011
Q ss_pred HHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCHHHHH----HHHHHHhcccchHHHHHHHHHHHHcCCCChH
Q 004369 348 MIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFS----SILTICSRLVALEQGEQIHALTLKTGFLSDV 423 (758)
Q Consensus 348 li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t~~----~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~ 423 (758)
++.++.+ +. ..+.+.|..++....... ..+..... .+.......+...++...+....... .+.
T Consensus 218 ~~~~~~r--------la-r~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~ 285 (618)
T 1qsa_A 218 AAVAFAS--------VA-RQDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QST 285 (618)
T ss_dssp HHHHHHH--------HH-HHCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCH
T ss_pred HHHHHHH--------HH-hcCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CCh
Confidence 1111111 11 336688888888776532 22222222 22223333442444555555444333 222
Q ss_pred HHHhHHhhhHHhcCCHHHHHHHHHhcCCCCh--hH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 004369 424 VVGTALVNMYKKCGRIERASRVFVEMSTRTL--IS-WTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACS 500 (758)
Q Consensus 424 ~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~--~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 500 (758)
....-.+..-.+.|+++.|...|+.|..... .- .-=+..++...|+.++|..+|+++... . +|-.++.+ .
T Consensus 286 ~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~----~--~fYg~lAa-~ 358 (618)
T 1qsa_A 286 SLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ----R--GFYPMVAA-Q 358 (618)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----C--SHHHHHHH-H
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC----C--ChHHHHHH-H
Confidence 2333444445567999999999998875421 11 112344667789999999999888642 1 34444422 2
Q ss_pred ccccHHHHHHHHHHhhhhcCCCCC---H-H--HHHHHHHHHHHcCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChh
Q 004369 501 NAGMVYEALGYFEMMQKEYKIKPV---M-D--HYMCLIDMFVRLGCIEEAFDFIKKMDFEPNEVIWSVFIAGCRRHGNME 574 (758)
Q Consensus 501 ~~g~~~~a~~~~~~~~~~~~~~p~---~-~--~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~ 574 (758)
+.|..-. . ......+. . . .--.-+..+...|...+|...+....-..+......+.......|..+
T Consensus 359 ~Lg~~~~-------~-~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~ 430 (618)
T 1qsa_A 359 RIGEEYE-------L-KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWD 430 (618)
T ss_dssp HTTCCCC-------C-CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHH
T ss_pred HcCCCCC-------C-CCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChH
Confidence 2221000 0 00000010 0 0 111234567788999999888777621233333344555556778888
Q ss_pred HHHHHHHHHhccCC---CCchhHHHHHHHhhhCCCchhHH
Q 004369 575 LGFYAAEQLLKLKP---KDCESYAMLLDIFVSAGRWEDVA 611 (758)
Q Consensus 575 ~a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~a~ 611 (758)
.+.....+....+. .-|..|..++.-+++.-.++...
T Consensus 431 ~~v~~~~~~~~~~~~~~~~P~~y~~~i~~~a~~~gv~~~l 470 (618)
T 1qsa_A 431 LSVQATIAGKLWDHLEERFPLAYNDLFKRYTSGKEIPQSY 470 (618)
T ss_dssp HHHHHHHHTTCTTCHHHHSCCTTHHHHHHHHTTSSSCHHH
T ss_pred HHHHHHHHHHhhcchhhhCCcchHHHHHHHHHHcCCCHHH
Confidence 77766654432220 01234555555566555555543
No 276
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=53.12 E-value=44 Score=34.51 Aligned_cols=96 Identities=9% Similarity=-0.073 Sum_probs=60.5
Q ss_pred HHhHHhhhHHhcCCHHHHHHHHHhcCC------CChhHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCCCHHHH--H
Q 004369 425 VGTALVNMYKKCGRIERASRVFVEMST------RTLISWTSMITGFANHSLSHQALQLFEDMLL---AGVRPNQVTF--V 493 (758)
Q Consensus 425 ~~~~Li~~y~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~t~--~ 493 (758)
+...+.+.|.++|++++|.+.|.++.. .-+..|-.+|..+...+++..+...+++... .+-.|+...- .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 445677777888888888888877652 1234566777778888888888888877654 2223332211 1
Q ss_pred HHHHHHhccccHHHHHHHHHHhhhhcC
Q 004369 494 GALAACSNAGMVYEALGYFEMMQKEYK 520 (758)
Q Consensus 494 ~ll~a~~~~g~~~~a~~~~~~~~~~~~ 520 (758)
.-...+...+++.+|.+.|-.+...+.
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 111234567888888888877665433
No 277
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=53.06 E-value=2.3e+02 Score=30.94 Aligned_cols=19 Identities=11% Similarity=-0.046 Sum_probs=13.5
Q ss_pred HHHHhcCCHHHHHHHHccC
Q 004369 319 YLYLKCGLVDEAQKLFDGM 337 (758)
Q Consensus 319 ~~~~~~g~~~~A~~~~~~m 337 (758)
.-+...|++++|..+|+-.
T Consensus 451 ~~ae~~G~~~dAi~LY~La 469 (661)
T 2qx5_A 451 RRADEDGRIYDSILLYQLA 469 (661)
T ss_dssp HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHHh
Confidence 3455778888888877653
No 278
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=51.77 E-value=1e+02 Score=31.51 Aligned_cols=72 Identities=8% Similarity=0.076 Sum_probs=32.8
Q ss_pred HHHHHHHHcCCCCCcch--HHHHHHHhhcCCCcHHHHHHHHHHHHhCCCCchh--HHHHHHHHhhcCCChHHHHHHHccC
Q 004369 60 QEALSVLTEGPKVQTSS--YVSLLQECVNRKSLSNAEIIHAHIVKTGSHQDFF--VMTFLVNVYGKCGNMEEAQKVFDNL 135 (758)
Q Consensus 60 ~~~~~~~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~f~~~ 135 (758)
++++.+++.|..|+... ..+.|...+..|+.+ +.+.+++.|...+.. ...+.+...++.|..+-+.-+++.-
T Consensus 28 ~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g 103 (437)
T 1n11_A 28 PIVKNLLQRGASPNVSNVKVETPLHMAARAGHTE----VAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENN 103 (437)
T ss_dssp HHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHH----HHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhCC
Confidence 44555556666554321 122333334455544 334444455433211 1112333445566766666666543
No 279
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=51.19 E-value=48 Score=32.23 Aligned_cols=55 Identities=15% Similarity=0.143 Sum_probs=41.4
Q ss_pred CCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhhhCCCchhHHHHHHHhhhC
Q 004369 552 DFEPN--EVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFVSAGRWEDVAVVKNLTREE 620 (758)
Q Consensus 552 ~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 620 (758)
+++|. ..++.+-+..+.+++|+..|....++++++.|... ..++|.++.......
T Consensus 191 ~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~~~qArkil~~ce~~ 247 (320)
T 3mkr_B 191 NLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKPE--------------VAQQTRKILSACEKN 247 (320)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCHH--------------HHHHHHHHHHHHHHS
T ss_pred CCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcC
Confidence 66663 44678888889999999999999999999987521 234577777666554
No 280
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=51.07 E-value=2.1e+02 Score=29.01 Aligned_cols=16 Identities=6% Similarity=0.277 Sum_probs=8.2
Q ss_pred HhhcCChHHHHHHHhc
Q 004369 220 YSTCGSLNSAIKAFNR 235 (758)
Q Consensus 220 y~~~g~~~~A~~~f~~ 235 (758)
.++.|+.+-...+++.
T Consensus 120 A~~~g~~~~v~~Ll~~ 135 (437)
T 1n11_A 120 AAREGHVETVLALLEK 135 (437)
T ss_dssp HHHHTCHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHhC
Confidence 3444555555555544
No 281
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=50.24 E-value=1.4e+02 Score=27.06 Aligned_cols=28 Identities=7% Similarity=-0.079 Sum_probs=16.4
Q ss_pred HHHHHhCCCchHHHHHHHHHHHcCCCCC
Q 004369 147 ISGYVQNSQPELAIHVFLDMLEAGNYPT 174 (758)
Q Consensus 147 i~~~~~~g~~~~A~~~~~~m~~~g~~p~ 174 (758)
+...++.|+.+-...+++.+.+.|..++
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~ 40 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELD 40 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCC
Confidence 3344566777766666666655555443
No 282
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=50.21 E-value=1.4e+02 Score=26.61 Aligned_cols=17 Identities=18% Similarity=0.108 Sum_probs=6.7
Q ss_pred chhHHHHHHHHHHhcCC
Q 004369 310 NLRVRNSIMYLYLKCGL 326 (758)
Q Consensus 310 ~~~~~~~li~~~~~~g~ 326 (758)
+..+....+.++.+.|.
T Consensus 125 ~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 125 DWFVRIAAAFALGEIGD 141 (211)
T ss_dssp SHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHcCC
Confidence 33333334444444433
No 283
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=48.60 E-value=1.3e+02 Score=27.29 Aligned_cols=50 Identities=8% Similarity=0.032 Sum_probs=22.7
Q ss_pred hcCCCcHHHHHHHHHHHHhCCCCchh--HHHHHHHHhhcCCChHHHHHHHcc
Q 004369 85 VNRKSLSNAEIIHAHIVKTGSHQDFF--VMTFLVNVYGKCGNMEEAQKVFDN 134 (758)
Q Consensus 85 ~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~f~~ 134 (758)
+..|+.+..+.+.+.+.+.|..++.. ...+.+...+..|+.+-+..+++.
T Consensus 17 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 68 (241)
T 1k1a_A 17 VVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA 68 (241)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHc
Confidence 34566655555555555444333221 111223333445555555555543
No 284
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=47.49 E-value=76 Score=26.20 Aligned_cols=64 Identities=13% Similarity=0.208 Sum_probs=42.8
Q ss_pred HhHHhhhHHhcCCHHHHHHHHHhcCCCCh---hHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCCH
Q 004369 426 GTALVNMYKKCGRIERASRVFVEMSTRTL---ISWTSMITGFANHSL--SHQALQLFEDMLLAGVRPNQ 489 (758)
Q Consensus 426 ~~~Li~~y~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~ 489 (758)
.+.++.-|...|+.++|.+.++++..|.. +...++..++-+.+. .+....++..+...|+-+..
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~ 78 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 78 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 45677778888899999999988875532 345555566665542 45677777777776654443
No 285
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=47.32 E-value=1.4e+02 Score=30.56 Aligned_cols=96 Identities=7% Similarity=-0.049 Sum_probs=70.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHH----
Q 004369 456 SWTSMITGFANHSLSHQALQLFEDMLLAGVRPN--QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYM---- 529 (758)
Q Consensus 456 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~---- 529 (758)
++..+..-|.+.|++++|.+.|.++...-..+. ...+..++..+...+++..+..+..++.....-.++....+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 566788889999999999999999998544444 45677888899999999999999998865433333322221
Q ss_pred HHHHHHHHcCCHHHHHHHHHHc
Q 004369 530 CLIDMFVRLGCIEEAFDFIKKM 551 (758)
Q Consensus 530 ~li~~~~~~g~~~~A~~~~~~m 551 (758)
+-+-.+...+++.+|-..|-+.
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHH
Confidence 2222344678899998887765
No 286
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=45.64 E-value=1.6e+02 Score=26.12 Aligned_cols=8 Identities=13% Similarity=0.098 Sum_probs=2.9
Q ss_pred HHHHhhcC
Q 004369 217 CSLYSTCG 224 (758)
Q Consensus 217 i~~y~~~g 224 (758)
+.+..+.|
T Consensus 133 ~~aL~~~~ 140 (211)
T 3ltm_A 133 AFALGEIG 140 (211)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHcC
Confidence 33333333
No 287
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=44.42 E-value=1.2e+02 Score=26.52 Aligned_cols=17 Identities=0% Similarity=0.231 Sum_probs=9.8
Q ss_pred hcCCChHHHHHHHccCC
Q 004369 120 GKCGNMEEAQKVFDNLP 136 (758)
Q Consensus 120 ~~~g~~~~A~~~f~~~~ 136 (758)
+..|+.+....++..-.
T Consensus 13 ~~~g~~~~v~~ll~~~~ 29 (201)
T 3hra_A 13 ANQRDTKKVKEILQDTT 29 (201)
T ss_dssp HHTTCHHHHHHHHTCTT
T ss_pred HHhccHHHHHHHHHcCC
Confidence 45566666666665443
No 288
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=44.36 E-value=1.1e+02 Score=27.57 Aligned_cols=22 Identities=5% Similarity=-0.020 Sum_probs=12.3
Q ss_pred HHHHhhcCCChHHHHHHHccCC
Q 004369 115 LVNVYGKCGNMEEAQKVFDNLP 136 (758)
Q Consensus 115 li~~~~~~g~~~~A~~~f~~~~ 136 (758)
.+...++.|+.+-+..+++.-.
T Consensus 45 ~L~~A~~~~~~~~v~~Ll~~~~ 66 (240)
T 3eu9_A 45 LLHWAAINNRIDLVKYYISKGA 66 (240)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHcCC
Confidence 3444455666666666665544
No 289
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=43.43 E-value=56 Score=30.51 Aligned_cols=89 Identities=10% Similarity=-0.103 Sum_probs=41.6
Q ss_pred HHhCCCchHHHHHHHHHHHcCCCCChh-------hHHHHHHHhc--ccCChHHHHHHHHHHHHhC---------CCCChh
Q 004369 150 YVQNSQPELAIHVFLDMLEAGNYPTNV-------TLGTALTACS--SLESIRLGKQIHAYVVKYQ---------TEDDTS 211 (758)
Q Consensus 150 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-------t~~~ll~~~~--~~~~~~~a~~~~~~~~~~g---------~~~~~~ 211 (758)
.++.|+.+....+++.+.+.|..++.. -.+.+..++. +.|+.+.++.+++.-...+ +.....
T Consensus 12 A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~ 91 (260)
T 3jxi_A 12 IVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYY 91 (260)
T ss_dssp HHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSE
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccccccccc
Confidence 345566666666666555555444422 2233333321 4566666655555443211 000000
Q ss_pred HHHHHHHHHhhcCChHHHHHHHhccCC
Q 004369 212 VGNSLCSLYSTCGSLNSAIKAFNRIRE 238 (758)
Q Consensus 212 ~~~~Li~~y~~~g~~~~A~~~f~~~~~ 238 (758)
...+.+...+..|+.+-+..+++.-..
T Consensus 92 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~ 118 (260)
T 3jxi_A 92 RGQTALHIAIERRCKHYVELLVEKGAD 118 (260)
T ss_dssp ESBCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHhCCCC
Confidence 122234444566777766666664433
No 290
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=42.54 E-value=1.9e+02 Score=25.96 Aligned_cols=104 Identities=13% Similarity=0.224 Sum_probs=68.1
Q ss_pred HHHHHHHHc-CCCCCHH---HHHHHHHHHHHcCChhHHHHHHHHHhcc--CCCCchhHHHHHHHhhhCCCchhHHHHHHH
Q 004369 543 EAFDFIKKM-DFEPNEV---IWSVFIAGCRRHGNMELGFYAAEQLLKL--KPKDCESYAMLLDIFVSAGRWEDVAVVKNL 616 (758)
Q Consensus 543 ~A~~~~~~m-~~~p~~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 616 (758)
++...|... ..+-|.. .|-.++..| ..++...+..+|..+... +-.-+..|...+..+...|++.+|.++++.
T Consensus 62 rc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~ 140 (202)
T 3esl_A 62 RCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLEL 140 (202)
T ss_dssp HHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 334444433 3444543 455555544 234466888888888764 455677889999999999999999999988
Q ss_pred hhhCCCCCCCceeEEEECCEEEEEecCCCCCCChHHHHHHHHHHHHHHHHcCcccC
Q 004369 617 TREEKLSETDDWSWIRIKDKVYSFKPNDGLHPQSAEIFKVLDELVEKAKCFGYKQQ 672 (758)
Q Consensus 617 m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~m~~~g~~~~ 672 (758)
-.+++-+ | ...+.....+...+|.+.+++.|
T Consensus 141 GI~~~A~------------------------P-~~rL~~~~~~F~~R~~~~~~~~~ 171 (202)
T 3esl_A 141 GAENNCR------------------------P-YNRLLRSLSNYEDRLREMNIVEN 171 (202)
T ss_dssp HHHTTCB------------------------S-HHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHcCCc------------------------c-HHHHHHHHHHHHHHHHhcCCCCC
Confidence 7765432 2 23445556677788888877333
No 291
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=37.87 E-value=75 Score=27.14 Aligned_cols=63 Identities=13% Similarity=0.207 Sum_probs=40.9
Q ss_pred HhHHhhhHHhcCCHHHHHHHHHhcCCCCh---hHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCC
Q 004369 426 GTALVNMYKKCGRIERASRVFVEMSTRTL---ISWTSMITGFANHSL--SHQALQLFEDMLLAGVRPN 488 (758)
Q Consensus 426 ~~~Li~~y~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~ 488 (758)
.+.++.-|...|+.++|.+.++++..|.. +...++..++-+.++ .+.+..++..+...|+-+.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 45677778888888888888888875532 344555556655432 4556677777776665443
No 292
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=36.32 E-value=1.6e+02 Score=24.25 Aligned_cols=63 Identities=11% Similarity=0.196 Sum_probs=42.4
Q ss_pred HHHHHHHhhcCChHHHHHHHhccCCCC---cchHHHHHHHHhhCCC--hhhHHHHHHHHHHCCCCCCh
Q 004369 214 NSLCSLYSTCGSLNSAIKAFNRIREKN---VMSWTTVIGACGENGE--AVQGLRFFSKMLSEGIQPNE 276 (758)
Q Consensus 214 ~~Li~~y~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~ 276 (758)
+.++.-|...|+.++|.+.++++..|. .+...++..++-+.+. .+.+..++..+...|+-+..
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~ 78 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 78 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 557778888899999999999987652 2234444555555432 45677888888877654433
No 293
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=36.11 E-value=2.4e+02 Score=25.29 Aligned_cols=67 Identities=19% Similarity=0.244 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCC
Q 004369 456 SWTSMITGFANHSLSHQALQLFEDMLLAGVRPN-QVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPV 524 (758)
Q Consensus 456 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~ 524 (758)
.|-..+..+ ..+...++.++|..|...|+--. +.-|......+...|++++|.++|+.-.+. +-.|-
T Consensus 82 lWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~-~A~P~ 149 (202)
T 3esl_A 82 IWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN-NCRPY 149 (202)
T ss_dssp HHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBSH
T ss_pred HHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCccH
Confidence 455454443 23446677888888887776555 445666666667778888888888777663 55663
No 294
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=36.05 E-value=11 Score=23.40 Aligned_cols=18 Identities=22% Similarity=0.630 Sum_probs=12.9
Q ss_pred cCCccccc-cCcccccccc
Q 004369 737 DSKRLHKF-VNGHCTCRDF 754 (758)
Q Consensus 737 ~~~~~h~~-~~g~cs~~~~ 754 (758)
.|-.-|.. .+|.|||+-|
T Consensus 11 ~CPkPHRL~~~~~C~CG~y 29 (42)
T 2l0z_A 11 ACPLPHRLNSLGGCRCGKY 29 (42)
T ss_dssp SCCTTSCCCTTSSBTTTTB
T ss_pred CCCCCceecCCceeccccc
Confidence 34455555 6899999987
No 295
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=35.79 E-value=3.4e+02 Score=26.94 Aligned_cols=26 Identities=15% Similarity=0.227 Sum_probs=20.4
Q ss_pred hHHHHHHHHhhCCChhhHHHHHHHHH
Q 004369 243 SWTTVIGACGENGEAVQGLRFFSKML 268 (758)
Q Consensus 243 ~~~~li~~~~~~g~~~~A~~l~~~m~ 268 (758)
....+|.-|...|+.++|...+++|.
T Consensus 56 ~~~~ii~EYf~~~d~~Ea~~~l~eL~ 81 (358)
T 3eiq_C 56 TLTPIIQEYFEHGDTNEVAEMLRDLN 81 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhC
Confidence 45677888888888888888888764
No 296
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=35.69 E-value=1.9e+02 Score=27.40 Aligned_cols=49 Identities=4% Similarity=0.115 Sum_probs=23.2
Q ss_pred HHhhcCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChHHHHHHHcc
Q 004369 82 QECVNRKSLSNAEIIHAHIVKTGSHQDFFVMTFLVNVYGKCGNMEEAQKVFDN 134 (758)
Q Consensus 82 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~ 134 (758)
...+..|+.+.. +.+++.|..++..-..+.+...++.|+.+-+..+++.
T Consensus 36 ~~A~~~g~~~~v----~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 84 (285)
T 3kea_A 36 YYAIADNNVRLV----CTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFS 84 (285)
T ss_dssp HHHHHTTCHHHH----HHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHT
T ss_pred HHHHHcCCHHHH----HHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence 333445665433 3344444333322222334444566666666666654
No 297
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=34.96 E-value=3.5e+02 Score=26.84 Aligned_cols=60 Identities=7% Similarity=0.125 Sum_probs=35.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccc--cHHHHHHHHHHhhh
Q 004369 457 WTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAG--MVYEALGYFEMMQK 517 (758)
Q Consensus 457 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g--~~~~a~~~~~~~~~ 517 (758)
.+.++.=|...|+.++|...++++....+.+ .+....+..+..+.+ ..+...+++..+.+
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhh-e~V~~av~~aLE~~~~~~re~~~~LL~~L~~ 281 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIVMVLESTGESAFKMILDLLKSLWK 281 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHH-HHHHHHHHHHHHCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchH-HHHHHHHHHHHccCchHHHHHHHHHHHHHHH
Confidence 4667777778888888888887774211111 334445555555533 23455666666655
No 298
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=34.86 E-value=2e+02 Score=25.68 Aligned_cols=65 Identities=11% Similarity=0.063 Sum_probs=42.4
Q ss_pred hhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHhcccc-----hHHHHHHHHHHHHcCC
Q 004369 346 NAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVA-----LEQGEQIHALTLKTGF 419 (758)
Q Consensus 346 ~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~-----~~~a~~i~~~~~~~~~ 419 (758)
--+|+++.++.+ ..+.+.|+-.+-+|.+.| .|....-..++.+....|. +..+...++.....|.
T Consensus 15 Yd~iSAf~KSiR--------GSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 84 (204)
T 2r9g_A 15 YDVISAFQKSIR--------GSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGL 84 (204)
T ss_dssp HHHHHHHHHHHH--------TTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHh--------cCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 345666665322 789999999999999999 7777666666767665553 2333344444444454
No 299
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=34.64 E-value=1.8e+02 Score=25.92 Aligned_cols=57 Identities=19% Similarity=0.169 Sum_probs=32.8
Q ss_pred HHHHHHHHHHcCCCCCHH-------HHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHH
Q 004369 541 IEEAFDFIKKMDFEPNEV-------IWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAML 597 (758)
Q Consensus 541 ~~~A~~~~~~m~~~p~~~-------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 597 (758)
++.|+.+|+.+...-|.. +--..+..|.+.|.+++|.+++++.+...+.+...-.-|
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL 157 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKL 157 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHH
Confidence 566777777773322211 112344578899999999999999888776655444444
No 300
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=33.35 E-value=2.7e+02 Score=25.02 Aligned_cols=144 Identities=13% Similarity=0.030 Sum_probs=68.0
Q ss_pred HHHHhhcCChHHHHHHHhccC-C---CCcchHHHHHHHHhhCCChhhHHHHHHHHHHCCCCCChhh--HHHHHHHHcccC
Q 004369 217 CSLYSTCGSLNSAIKAFNRIR-E---KNVMSWTTVIGACGENGEAVQGLRFFSKMLSEGIQPNEFT--LTSISSVCGTML 290 (758)
Q Consensus 217 i~~y~~~g~~~~A~~~f~~~~-~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~~~ll~~~~~~~ 290 (758)
+...+..|+.+-+..+++.-. . ++...++.+.. .+..|+.+ +++.+.+.|..++... -.+.+...+..|
T Consensus 81 L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~-A~~~~~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 155 (237)
T 3b7b_A 81 LHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIW-ATEYKHVD----LVKLLLSKGSDINIRDNEENICLHWAAFSG 155 (237)
T ss_dssp HHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHH-HHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHH-HHHcCCHH----HHHHHHHCCCCCCccCCCCCCHHHHHHHCC
Confidence 333445566666655555431 1 22222333332 23444433 4444445555443321 111223333344
Q ss_pred ChHHHHHHHHHHHHhCCCCchh--HHHHHHHHHHhcCCHHHHHHHHccCCCCCe---eechhHHHHHhhhchhhhchhhc
Q 004369 291 SLRVGAQVHSLGIKLGYASNLR--VRNSIMYLYLKCGLVDEAQKLFDGMSHVNL---VTWNAMIAGHAQMMDLAKDDLSA 365 (758)
Q Consensus 291 ~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~~~~~li~~~~~~~~~~~~~l~~ 365 (758)
..+ +.+.+++.|..++.. ...+.+...++.|+.+-+.-+++.-.+++. .-++.+ ...+.
T Consensus 156 ~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l-~~A~~----------- 219 (237)
T 3b7b_A 156 CVD----IAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPL-QCASL----------- 219 (237)
T ss_dssp CHH----HHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHH-HHSCT-----------
T ss_pred CHH----HHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHH-HHHHH-----------
Confidence 443 444555556544322 122345555677888877777765443322 222222 22233
Q ss_pred CCChhHHHHHHHHhHh
Q 004369 366 HNGGTEALSIFSKLNS 381 (758)
Q Consensus 366 ~g~~~~A~~l~~~m~~ 381 (758)
.|+...++++.+.+++
T Consensus 220 ~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 220 NSQVWSALQMSKALQD 235 (237)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhc
Confidence 6777778887777765
No 301
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=32.58 E-value=2.2e+02 Score=26.92 Aligned_cols=55 Identities=11% Similarity=-0.087 Sum_probs=23.8
Q ss_pred HHHHHHcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHcc
Q 004369 281 SISSVCGTMLSLRVGAQVHSLGIKLGYASNLRVRNSIMYLYLKCGLVDEAQKLFDG 336 (758)
Q Consensus 281 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 336 (758)
+.+...+..|..+.++-+++.-..... .+..-.+..+...++.|+.+-+.-+++.
T Consensus 163 t~L~~A~~~g~~~~v~~Ll~~gad~n~-~~~~g~t~~L~~A~~~~~~~~v~~Ll~~ 217 (285)
T 3kea_A 163 SCIHITIKNGHVDMMILLLDYMTSTNT-NNSLLFIPDIKLAIDNKDIEMLQALFKY 217 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCT-TCCCBCCTTHHHHHHHTCHHHHHHHTTS
T ss_pred cHHHHHHHcChHHHHHHHHHcCCCCCc-ccCCCCChHHHHHHHcCCHHHHHHHHHc
Confidence 334444455555555444443222111 1111112223444556676666655554
No 302
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=32.35 E-value=2.2e+02 Score=24.74 Aligned_cols=175 Identities=11% Similarity=0.070 Sum_probs=84.7
Q ss_pred HHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCChhH--HHHHHHHHhhcCChH
Q 004369 150 YVQNSQPELAIHVFLDMLEAGNYPTNVTLGTALTACSSLESIRLGKQIHAYVVKYQTEDDTSV--GNSLCSLYSTCGSLN 227 (758)
Q Consensus 150 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~Li~~y~~~g~~~ 227 (758)
.+..|+.+....++..-...--..|..-.+.+. ..+..|+.+ +.+.+++.|..++... ...-+...+..|+.+
T Consensus 12 A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~-~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~ 86 (201)
T 3hra_A 12 AANQRDTKKVKEILQDTTYQVDEVDTEGNTPLN-IAVHNNDIE----IAKALIDRGADINLQNSISDSPYLYAGAQGRTE 86 (201)
T ss_dssp HHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHH-HHHHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHH-HHHHcCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence 356777777666654321000112222233333 334455654 4445556676554322 223445556778888
Q ss_pred HHHHHHhccC-C---CCcchHHHHHHHHhhCCChhhHHHHHHHHHHCC-CCC---ChhhHHHHHHHHcccCChHHHHHHH
Q 004369 228 SAIKAFNRIR-E---KNVMSWTTVIGACGENGEAVQGLRFFSKMLSEG-IQP---NEFTLTSISSVCGTMLSLRVGAQVH 299 (758)
Q Consensus 228 ~A~~~f~~~~-~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p---~~~t~~~ll~~~~~~~~~~~a~~~~ 299 (758)
-+..+++.-. . +|...++.|. ..+..|+.+-+..+ .+.| ..+ |..-.+.+..++........-.++.
T Consensus 87 ~~~~Ll~~~~~~~~~~~~~g~t~L~-~A~~~~~~~~v~~L----l~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v 161 (201)
T 3hra_A 87 ILAYMLKHATPDLNKHNRYGGNALI-PAAEKGHIDNVKLL----LEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIV 161 (201)
T ss_dssp HHHHHHHHSCCCTTCCCTTSCCSHH-HHHHTTCHHHHHHH----HHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHH
T ss_pred HHHHHHhccCcccccccCCCCcHHH-HHHHcCCHHHHHHH----HHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHH
Confidence 8888885433 1 2322233333 33455665444333 3333 222 3333344444443333334446677
Q ss_pred HHHHHhCCCCchhH--HHHHHHHHHhcCCHHHHHHHH
Q 004369 300 SLGIKLGYASNLRV--RNSIMYLYLKCGLVDEAQKLF 334 (758)
Q Consensus 300 ~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~ 334 (758)
+.+++.|..++... ..+-+....+.|+.+-+.-++
T Consensus 162 ~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll 198 (201)
T 3hra_A 162 KLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILA 198 (201)
T ss_dssp HHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHH
Confidence 77778776655332 123344555667666555444
No 303
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=32.09 E-value=3.4e+02 Score=31.29 Aligned_cols=85 Identities=2% Similarity=-0.171 Sum_probs=44.9
Q ss_pred HHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc--CCCCC----------------
Q 004369 495 ALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM--DFEPN---------------- 556 (758)
Q Consensus 495 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~---------------- 556 (758)
++..|...|.++-+.++.... +.+...--.+..+|...|+.++|...|+++ ++.++
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~------~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWL------NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGC------CSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhhc------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCc
Confidence 445556666666554433222 122222223556666777777777777766 22211
Q ss_pred -------HHHHHHHHHHHHHcCChhHHHHHHHHHhc
Q 004369 557 -------EVIWSVFIAGCRRHGNMELGFYAAEQLLK 585 (758)
Q Consensus 557 -------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 585 (758)
..-|..++.-+.+++-++-+.+.++.+++
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~ 925 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADA 925 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 11345555555666666666666666664
No 304
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=31.71 E-value=2.8e+02 Score=24.76 Aligned_cols=19 Identities=0% Similarity=-0.076 Sum_probs=8.7
Q ss_pred HHHHhhcCChHHHHHHHhc
Q 004369 217 CSLYSTCGSLNSAIKAFNR 235 (758)
Q Consensus 217 i~~y~~~g~~~~A~~~f~~ 235 (758)
+...++.|+.+-+..+++.
T Consensus 46 L~~A~~~~~~~~v~~Ll~~ 64 (240)
T 3eu9_A 46 LHWAAINNRIDLVKYYISK 64 (240)
T ss_dssp HHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHc
Confidence 3344444555544444443
No 305
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=31.62 E-value=3.6e+02 Score=26.03 Aligned_cols=65 Identities=6% Similarity=0.109 Sum_probs=39.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccc--cHHHHHHHHHHhhhhcCCCC
Q 004369 457 WTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAG--MVYEALGYFEMMQKEYKIKP 523 (758)
Q Consensus 457 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g--~~~~a~~~~~~~~~~~~~~p 523 (758)
.+.++.-|...|+.++|...++++......| .+....+..+..+.+ ..+...+++..+.+. |+-+
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~-e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~-~~ls 235 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIIMVLESTGESTFKMILDLLKSLWKS-STIT 235 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHH-HHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHH-CSSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcchH-HHHHHHHHHHHccCChHHHHHHHHHHHHHHHC-CCCC
Confidence 4567888888889999998888874211111 344455555666543 245566677776653 4433
No 306
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=31.43 E-value=4.2e+02 Score=26.69 Aligned_cols=282 Identities=9% Similarity=0.007 Sum_probs=147.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHccCCC--------CCeeechhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCC
Q 004369 314 RNSIMYLYLKCGLVDEAQKLFDGMSH--------VNLVTWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMK 385 (758)
Q Consensus 314 ~~~li~~~~~~g~~~~A~~~~~~m~~--------~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~ 385 (758)
...|...|.+.|+.++..+++..... +..-.-..+|..+... .+..+.-.++..+..+..-
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~----------~~~~~~~~~~~~~~~~~a~- 90 (394)
T 3txn_A 22 ILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDM----------DAGTGIEVQLCKDCIEWAK- 90 (394)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTS----------CCCHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcC----------CCcHHHHHHHHHHHHHHHH-
Confidence 35688899999999999998887754 1112233444444441 2333444444444433100
Q ss_pred CCHHHH------HHHHHHHhcccchHHHHHHHHHHHHc--CCC---ChHHHHhHHhhhHHhcCCHHHHHHHHHhcC----
Q 004369 386 PDLYTF------SSILTICSRLVALEQGEQIHALTLKT--GFL---SDVVVGTALVNMYKKCGRIERASRVFVEMS---- 450 (758)
Q Consensus 386 p~~~t~------~~ll~a~~~~~~~~~a~~i~~~~~~~--~~~---~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~---- 450 (758)
-+..+| ..+...+...|++.+|..++..+.+. ..+ .-..++-.-+.+|...+++.++...+....
T Consensus 91 ~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ 170 (394)
T 3txn_A 91 QEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTAN 170 (394)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhc
Confidence 011122 24666777888888887777666552 111 113455566777888888888877775542
Q ss_pred --CCChhHHHH----HHHHHH-hcCCHHHHHHHHHHHHHc--C-CCCC---HHHHHHHHHHHhccccHHHHHHHH-HHhh
Q 004369 451 --TRTLISWTS----MITGFA-NHSLSHQALQLFEDMLLA--G-VRPN---QVTFVGALAACSNAGMVYEALGYF-EMMQ 516 (758)
Q Consensus 451 --~~~~~~~~~----li~~~~-~~g~~~~A~~~~~~m~~~--g-~~p~---~~t~~~ll~a~~~~g~~~~a~~~~-~~~~ 516 (758)
.+++..-.. -.-.+. ..+++..|...|-+..+. . ..|. ...|..+ .+...... .+-..++ ....
T Consensus 171 ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL-~aLl~~~r-~el~~~l~~~~~ 248 (394)
T 3txn_A 171 AIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLL-CKIMLGQS-DDVNQLVSGKLA 248 (394)
T ss_dssp HSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-HHHHTTCG-GGHHHHHHSHHH
T ss_pred cCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHH-HHHHcCCH-HHHHHHhccccc
Confidence 122221111 122344 678888888877665431 0 0121 1223222 22222221 1111221 1111
Q ss_pred hhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc--CCCCCHHH---HHHHHHHHHHcCChhHHHHHHHHHhccCCCCc
Q 004369 517 KEYKIKPVMDHYMCLIDMFVRLGCIEEAFDFIKKM--DFEPNEVI---WSVFIAGCRRHGNMELGFYAAEQLLKLKPKDC 591 (758)
Q Consensus 517 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~---~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 591 (758)
..+ ..|+...+..++.+| +.+++.+..++++.. .+..|... |..|....+ +..+.++ ..|-..
T Consensus 249 ~~~-~~pei~~l~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir--------~~~L~~i--~~pYsr 316 (394)
T 3txn_A 249 ITY-SGRDIDAMKSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTML--------EQNLCRI--IEPYSR 316 (394)
T ss_dssp HTT-CSHHHHHHHHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHH--------HHHHHHH--HTTCSE
T ss_pred ccc-CCccHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH--------HHHHHHH--hHhhce
Confidence 112 346666666666655 556777777777766 34445543 112221111 1122222 246666
Q ss_pred hhHHHHHHHhhhCCCchhHHHHHHHhhhCCC
Q 004369 592 ESYAMLLDIFVSAGRWEDVAVVKNLTREEKL 622 (758)
Q Consensus 592 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 622 (758)
.....++..+.- ..+++....-.|...|.
T Consensus 317 Isl~~iA~~l~l--s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 317 VQVAHVAESIQL--PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp EEHHHHHHHHTC--CHHHHHHHHHHHHHTTS
T ss_pred eeHHHHHHHHCc--CHHHHHHHHHHHHHCCC
Confidence 777778777754 57788888888877654
No 307
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=30.69 E-value=1.4e+02 Score=29.45 Aligned_cols=55 Identities=15% Similarity=0.075 Sum_probs=25.9
Q ss_pred HHhhcCCChHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHcCC
Q 004369 117 NVYGKCGNMEEAQKVFDNLPRINVVSWTSLISGYVQNSQPELAIHVFLDMLEAGN 171 (758)
Q Consensus 117 ~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 171 (758)
...++.|..+-+.-+++.-...+...-.+.+...+..|+.+-+..+++.-...|.
T Consensus 58 ~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~ 112 (364)
T 3ljn_A 58 HLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQ 112 (364)
T ss_dssp HHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHcCCHHHHHHHHHCCCCccccCCCCHHHHHHHcCCHHHHHHHHHhccccCC
Confidence 3345556666666666554433321112223333455666555555554333343
No 308
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=30.47 E-value=2.5e+02 Score=23.83 Aligned_cols=49 Identities=10% Similarity=-0.022 Sum_probs=37.1
Q ss_pred hHHHHHHHHHhccC--CCCchhHHHHHHHhhhCCCchhHHHHHHHhhhCCC
Q 004369 574 ELGFYAAEQLLKLK--PKDCESYAMLLDIFVSAGRWEDVAVVKNLTREEKL 622 (758)
Q Consensus 574 ~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 622 (758)
+.+..++..+...+ -.-+..|...+..+...|++.+|.++++.-.+++-
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A 132 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQA 132 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 34777888887644 45667888888888889999999988888776543
No 309
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=29.37 E-value=49 Score=17.63 Aligned_cols=17 Identities=29% Similarity=0.599 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHHHHHH
Q 004369 650 SAEIFKVLDELVEKAKC 666 (758)
Q Consensus 650 ~~~i~~~l~~l~~~m~~ 666 (758)
..++|..++++.+++++
T Consensus 3 adelykeledlqerlrk 19 (27)
T 3twe_A 3 ADELYKELEDLQERLRK 19 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46788888888877765
No 310
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=29.32 E-value=3.9e+02 Score=25.69 Aligned_cols=103 Identities=16% Similarity=0.132 Sum_probs=51.0
Q ss_pred HHHHHHHHhCCCCchh--HHHHHHHHHHhcCCHHHHHHHHccCC-C---CCeeechhHHHHHhhhchhhhchhhcCCChh
Q 004369 297 QVHSLGIKLGYASNLR--VRNSIMYLYLKCGLVDEAQKLFDGMS-H---VNLVTWNAMIAGHAQMMDLAKDDLSAHNGGT 370 (758)
Q Consensus 297 ~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~-~---~~~~~~~~li~~~~~~~~~~~~~l~~~g~~~ 370 (758)
.+...+++.|..++.. ...+.+...++.|..+.+..+++.-. . .|..-++.|..+. + .|+.+
T Consensus 220 ~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~-~-----------~g~~~ 287 (337)
T 4g8k_A 220 AITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAV-E-----------LKLKK 287 (337)
T ss_dssp HHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHH-H-----------TTCHH
T ss_pred HHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHH-H-----------cCCHH
Confidence 3444556666544322 12233445567788887777776421 1 2333344554442 3 45433
Q ss_pred HHHHHHHHhHhCCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCh
Q 004369 371 EALSIFSKLNSSGMKPDLYTFSSILTICSRLVALEQGEQIHALTLKTGFLSD 422 (758)
Q Consensus 371 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~ 422 (758)
+.+.+.+.|..+|..+ .+...+..|+.+ +.+.+++.|-.+|
T Consensus 288 ----iv~~Ll~~GAd~n~~~---~L~~A~~~~~~~----iv~~Ll~~GA~~d 328 (337)
T 4g8k_A 288 ----IAELLCKRGASTDCGD---LVMTARRNYDHS----LVKVLLSHGAKED 328 (337)
T ss_dssp ----HHHHHHTTSCSSTTCC---HHHHHHHTTCHH----HHHHHHHTTCCC-
T ss_pred ----HHHHHHHCCCCCCCCC---HHHHHHHcCCHH----HHHHHHHCcCCCC
Confidence 3444566777776554 223333344443 4445556665554
No 311
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=29.32 E-value=1.9e+02 Score=26.71 Aligned_cols=87 Identities=10% Similarity=0.054 Sum_probs=44.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH--cCCCC----CHHHHHHHHHHHhccccHHHHHHHHHHhhhhcCCCCCHHHHHHHHHH
Q 004369 461 ITGFANHSLSHQALQLFEDMLL--AGVRP----NQVTFVGALAACSNAGMVYEALGYFEMMQKEYKIKPVMDHYMCLIDM 534 (758)
Q Consensus 461 i~~~~~~g~~~~A~~~~~~m~~--~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 534 (758)
+..+....++++|++++++..+ .++++ +.......+..-.....-.-+..+.+.+.. .++.......+..
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~----~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS----SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT----CSSHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHH
Confidence 4455666677777777665543 12222 111112222222222222223333344421 3445556667788
Q ss_pred HHHcCCHHHHHHHHHHc
Q 004369 535 FVRLGCIEEAFDFIKKM 551 (758)
Q Consensus 535 ~~~~g~~~~A~~~~~~m 551 (758)
+.|.|+.++|.++|-+.
T Consensus 101 L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHH
Confidence 88999999998887554
No 312
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=28.99 E-value=1.5e+02 Score=29.25 Aligned_cols=19 Identities=5% Similarity=0.067 Sum_probs=10.8
Q ss_pred HHHHHhcCCHHHHHHHHcc
Q 004369 318 MYLYLKCGLVDEAQKLFDG 336 (758)
Q Consensus 318 i~~~~~~g~~~~A~~~~~~ 336 (758)
+...+..|+.+-+..+++.
T Consensus 177 L~~A~~~g~~~~v~~Ll~~ 195 (364)
T 3ljn_A 177 LMRAMEFRNREALDLMMDT 195 (364)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhc
Confidence 3334455666666666654
No 313
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=28.98 E-value=3.6e+02 Score=25.12 Aligned_cols=18 Identities=17% Similarity=-0.177 Sum_probs=8.1
Q ss_pred chhHHHHHHHHHHhcCCH
Q 004369 310 NLRVRNSIMYLYLKCGLV 327 (758)
Q Consensus 310 ~~~~~~~li~~~~~~g~~ 327 (758)
+..+....+.++.+.|+.
T Consensus 205 ~~~vR~~A~~aL~~~~~~ 222 (280)
T 1oyz_A 205 NEEVRIEAIIGLSYRKDK 222 (280)
T ss_dssp CHHHHHHHHHHHHHTTCG
T ss_pred CHHHHHHHHHHHHHhCCH
Confidence 344444444444444443
No 314
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=28.90 E-value=1e+02 Score=28.60 Aligned_cols=90 Identities=8% Similarity=-0.030 Sum_probs=48.0
Q ss_pred HHhhCCChhhHHHHHHHHHHCCCCCChhh-------HHHHHHHHc--ccCChHHHHHHHHHHHHhC---------CCCch
Q 004369 250 ACGENGEAVQGLRFFSKMLSEGIQPNEFT-------LTSISSVCG--TMLSLRVGAQVHSLGIKLG---------YASNL 311 (758)
Q Consensus 250 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-------~~~ll~~~~--~~~~~~~a~~~~~~~~~~g---------~~~~~ 311 (758)
..++.|+.+....+++.+.+.|..++... .+.+..++. +.|+.+.++.+++.-...+ +....
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d 90 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVY 90 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSS
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccc
Confidence 34556777777777776666665555332 233443432 5566666666665543311 11000
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHccCCC
Q 004369 312 RVRNSIMYLYLKCGLVDEAQKLFDGMSH 339 (758)
Q Consensus 312 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 339 (758)
....+.+...+..|+.+-+..+++.-..
T Consensus 91 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~ 118 (260)
T 3jxi_A 91 YRGQTALHIAIERRCKHYVELLVEKGAD 118 (260)
T ss_dssp EESBCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHhCCCC
Confidence 0122344455667888888877776444
No 315
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=28.62 E-value=20 Score=22.49 Aligned_cols=10 Identities=20% Similarity=0.766 Sum_probs=8.6
Q ss_pred ccccCCchhH
Q 004369 711 STTMCRDCHN 720 (758)
Q Consensus 711 n~~~~~~~~~ 720 (758)
+.|+|.+|+.
T Consensus 16 ~YRvC~~Cgk 25 (44)
T 2lo3_A 16 QYRVCEKCGK 25 (44)
T ss_dssp CEEECTTTCC
T ss_pred cchhhcccCC
Confidence 7899999983
No 316
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=28.26 E-value=2.2e+02 Score=25.32 Aligned_cols=48 Identities=10% Similarity=0.135 Sum_probs=35.9
Q ss_pred HHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHhcccc
Q 004369 348 MIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVA 403 (758)
Q Consensus 348 li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 403 (758)
+|+++.++.+ ..+.+.|+-.+-+|++.|-.|....-..++.+....|.
T Consensus 10 ~ISAf~KSiR--------GSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGl 57 (201)
T 3bge_A 10 LISALHKSVR--------GSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGN 57 (201)
T ss_dssp HHHHHHHHHH--------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHh--------CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 5566655322 78899999999999999988887777777777655553
No 317
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=28.06 E-value=1.5e+02 Score=25.26 Aligned_cols=64 Identities=11% Similarity=0.169 Sum_probs=42.3
Q ss_pred HHHHHHHHhhcCChHHHHHHHhccCCCC---cchHHHHHHHHhhCCC--hhhHHHHHHHHHHCCCCCCh
Q 004369 213 GNSLCSLYSTCGSLNSAIKAFNRIREKN---VMSWTTVIGACGENGE--AVQGLRFFSKMLSEGIQPNE 276 (758)
Q Consensus 213 ~~~Li~~y~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~ 276 (758)
.+.++.-|...|+.++|.+.++++..|. .+...++..++-+.+. .+.+..++..+...|+-+..
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~ 80 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 80 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 3567778888899999999999987652 2234444455554322 45677888888777654433
No 318
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=25.84 E-value=2.1e+02 Score=28.13 Aligned_cols=82 Identities=16% Similarity=0.208 Sum_probs=51.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHc-------CC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHhcc-C------
Q 004369 523 PVMDHYMCLIDMFVRLGCIEEAFDFIKKM-------DF-EPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKL-K------ 587 (758)
Q Consensus 523 p~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~------ 587 (758)
..+.-|..+..-+.|.+++.||++.+.+. .. +-|..+|.-++..-- +.--.+++...+. +
T Consensus 294 ~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~reDeEIYKEf~eIAn-----eliP~~~k~a~~~~~~~G~~~ 368 (472)
T 3re2_A 294 HHIYPYTYLGGYYYRKKKYYEAIASWVDAGYVAGKYNYSKDDEEMYKEFHEIAN-----DLIPNILKDAVAKADPSGTGS 368 (472)
T ss_dssp CCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHH-----THHHHHHHHHHTCC-------
T ss_pred CCccchhhhhhhhhhcchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHH-----HHhhHHHHhhhhccCCCCcch
Confidence 34567888999999999999999998776 11 235666665554321 1111222222222 2
Q ss_pred ---CCCchhHHHHHHHhhhCCCchh
Q 004369 588 ---PKDCESYAMLLDIFVSAGRWED 609 (758)
Q Consensus 588 ---p~~~~~~~~l~~~~~~~g~~~~ 609 (758)
-.||..+..|...|--.-+|+|
T Consensus 369 ~siL~DpecfA~LLrFYDgIC~WEE 393 (472)
T 3re2_A 369 TNLTSDPKFFALVLQFYDGICLWEE 393 (472)
T ss_dssp -CGGGCHHHHHHHHHHHHHHHHHHT
T ss_pred hhhccChHHHHHHHHHhhcceeccc
Confidence 2378889999988877777766
No 319
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=25.35 E-value=3.3e+02 Score=23.47 Aligned_cols=81 Identities=7% Similarity=0.086 Sum_probs=0.0
Q ss_pred HHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhc--cCCCCchhHHHHHHHhhhCCCchhHHHHHHHh
Q 004369 541 IEEAFDFIKKM-DFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLK--LKPKDCESYAMLLDIFVSAGRWEDVAVVKNLT 617 (758)
Q Consensus 541 ~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 617 (758)
++.+...|..- ..+-|..-...-+.--...++ +..+|..+.. ++-.-+..|...+..+...|++.+|.++++.-
T Consensus 46 LErc~~~f~~~~~YknD~RyLklWl~ya~~~~~---p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~G 122 (164)
T 2wvi_A 46 LERAVEALQGEKRYYSDPRFLNLWLKLGRLCNE---PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEG 122 (164)
T ss_dssp HHHHHHHTTTCGGGTTCHHHHHHHHHHHHHCSC---HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhccCHHHHHHHHHHHHhcCC---HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q ss_pred hhCCCCC
Q 004369 618 REEKLSE 624 (758)
Q Consensus 618 ~~~~~~~ 624 (758)
.+++-++
T Consensus 123 i~~~A~P 129 (164)
T 2wvi_A 123 IQQKAEP 129 (164)
T ss_dssp HHTTCBS
T ss_pred HHcCCCc
No 320
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=25.01 E-value=3.7e+02 Score=23.99 Aligned_cols=44 Identities=18% Similarity=0.247 Sum_probs=32.2
Q ss_pred HHHHHH---hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccc
Q 004369 460 MITGFA---NHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGM 504 (758)
Q Consensus 460 li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 504 (758)
+|+++- +..+.+.|+-.+-+|++.| .|..+.-..++.+....|.
T Consensus 17 ~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGl 63 (204)
T 2r9g_A 17 VISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGL 63 (204)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccC
Confidence 445543 4678999999999999999 7776666666666666553
No 321
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=24.56 E-value=3.7e+02 Score=23.88 Aligned_cols=15 Identities=13% Similarity=0.224 Sum_probs=7.4
Q ss_pred hcCCChHHHHHHHcc
Q 004369 120 GKCGNMEEAQKVFDN 134 (758)
Q Consensus 120 ~~~g~~~~A~~~f~~ 134 (758)
++.|+.+....+++.
T Consensus 11 ~~~g~~~~v~~Ll~~ 25 (232)
T 2rfa_A 11 AKENDVQALSKLLKF 25 (232)
T ss_dssp HHTTCHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHh
Confidence 444555555555543
No 322
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=24.46 E-value=2.5e+02 Score=25.90 Aligned_cols=87 Identities=11% Similarity=0.053 Sum_probs=46.0
Q ss_pred HHHHHHcCCHHHHHHHHHHc-----CCCC----CHHHHHHHHHHHHHcCChhHHHHHHHHHhccCCCCchhHHHHHHHhh
Q 004369 532 IDMFVRLGCIEEAFDFIKKM-----DFEP----NEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKPKDCESYAMLLDIFV 602 (758)
Q Consensus 532 i~~~~~~g~~~~A~~~~~~m-----~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 602 (758)
+|.+....++++|.+++++. +.++ +.......+..-.....-..+..+.+.+ .. ..++......+..+.
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~-~~~~~~~r~~v~~L~ 102 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS-SNEIVHLKSGTENMI 102 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT-CSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh-cCCHHHHHHHHHHHH
Confidence 55666677777777776654 2221 1111122222222222233444444444 22 334555666677788
Q ss_pred hCCCchhHHHHHHHhhhC
Q 004369 603 SAGRWEDVAVVKNLTREE 620 (758)
Q Consensus 603 ~~g~~~~a~~~~~~m~~~ 620 (758)
+.|+-++|..++-..+..
T Consensus 103 rLg~~~~A~~lfL~~rs~ 120 (235)
T 2d2s_A 103 KLGLPEQALDLFLQNRSN 120 (235)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HCCChhHHHHHHHHHHHH
Confidence 888888888887666543
No 323
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=24.42 E-value=3.1e+02 Score=24.70 Aligned_cols=68 Identities=10% Similarity=0.190 Sum_probs=45.5
Q ss_pred echhHHHHHhhhchhhhchhhcCCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHhcccc-----hHHHHHHHHHHHHcC
Q 004369 344 TWNAMIAGHAQMMDLAKDDLSAHNGGTEALSIFSKLNSSGMKPDLYTFSSILTICSRLVA-----LEQGEQIHALTLKTG 418 (758)
Q Consensus 344 ~~~~li~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~-----~~~a~~i~~~~~~~~ 418 (758)
..--+|+++.++.+ ..+++.|+-.+-+|++.|-.|....-..++.+....|. +..+...++.....|
T Consensus 34 ~HYd~ISAf~KSiR--------GSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG 105 (213)
T 3ctd_A 34 NHFDVISAFIKSIR--------GSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVG 105 (213)
T ss_dssp CHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHh--------cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhC
Confidence 34446677666332 78999999999999999988888777777777765553 233334444444444
Q ss_pred C
Q 004369 419 F 419 (758)
Q Consensus 419 ~ 419 (758)
.
T Consensus 106 ~ 106 (213)
T 3ctd_A 106 F 106 (213)
T ss_dssp T
T ss_pred C
Confidence 3
No 324
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=24.41 E-value=4.3e+02 Score=24.53 Aligned_cols=62 Identities=6% Similarity=-0.053 Sum_probs=26.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhccCC
Q 004369 523 PVMDHYMCLIDMFVRLGCIEEAFDFIKKMDFEPNEVIWSVFIAGCRRHGNMELGFYAAEQLLKLKP 588 (758)
Q Consensus 523 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 588 (758)
++..+-...+.++++.|..+-.-.+.+.+. .|+ +-...+.+....|+ +.+...+.++++..+
T Consensus 204 ~~~~vR~~A~~aL~~~~~~~~~~~L~~~l~-d~~--vr~~a~~aL~~i~~-~~~~~~L~~~l~~~~ 265 (280)
T 1oyz_A 204 KNEEVRIEAIIGLSYRKDKRVLSVLCDELK-KNT--VYDDIIEAAGELGD-KTLLPVLDTMLYKFD 265 (280)
T ss_dssp SCHHHHHHHHHHHHHTTCGGGHHHHHHHHT-SSS--CCHHHHHHHHHHCC-GGGHHHHHHHHTTSS
T ss_pred CCHHHHHHHHHHHHHhCCHhhHHHHHHHhc-Ccc--HHHHHHHHHHhcCc-hhhhHHHHHHHhcCC
Confidence 344444455555555554322222222222 123 22233445555555 345555555554433
No 325
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=23.98 E-value=64 Score=25.03 Aligned_cols=38 Identities=18% Similarity=0.159 Sum_probs=31.6
Q ss_pred CChHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHH
Q 004369 123 GNMEEAQKVFDNLPRINVVSWTSLISGYVQNSQPELAI 160 (758)
Q Consensus 123 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~ 160 (758)
...+.|+++++.++.+...+|..++.++...|+..-|-
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 57889999999999999999999999997777665543
No 326
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=23.82 E-value=2e+02 Score=26.75 Aligned_cols=20 Identities=10% Similarity=0.099 Sum_probs=12.1
Q ss_pred HHHHHHhcCCHHHHHHHHcc
Q 004369 317 IMYLYLKCGLVDEAQKLFDG 336 (758)
Q Consensus 317 li~~~~~~g~~~~A~~~~~~ 336 (758)
-+...++.|+.+-+..+++.
T Consensus 236 pL~~A~~~g~~~iv~~Ll~~ 255 (273)
T 2pnn_A 236 PLALAASSGKIGVLAYILQR 255 (273)
T ss_dssp HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhChHHHHHHHHHC
Confidence 34455667777766666554
No 327
>2k0q_A Putative uncharacterized protein COPK; copper, heavy metal resistance, open barrel, plasmid- encoded, metal binding protein; NMR {Cupriavidus metallidurans} PDB: 2km0_A 2lel_A 3dso_A 3dsp_A 3n7d_A 3n7e_A
Probab=23.76 E-value=22 Score=25.33 Aligned_cols=23 Identities=17% Similarity=0.433 Sum_probs=18.9
Q ss_pred CeEEEecCCccccccCccccccc
Q 004369 731 REIIVRDSKRLHKFVNGHCTCRD 753 (758)
Q Consensus 731 ~~~~~~~~~~~h~~~~g~cs~~~ 753 (758)
..|-+.|.+..|+|+||+-+-.|
T Consensus 8 k~v~LkDGstvyiFKDGKMamEd 30 (74)
T 2k0q_A 8 KTYDLQDGSKVHVFKDGKMGMEN 30 (74)
T ss_dssp EEEEBTTSCEEEEETTSCEEEEC
T ss_pred eeEecCCCcEEEEEcCCceehhh
Confidence 45778899999999999976554
No 328
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=23.46 E-value=2e+02 Score=30.21 Aligned_cols=61 Identities=16% Similarity=0.117 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHhhhhcCC--CCCH--HHH-HHHHHHHHHcCCHHHHHHHHHHc
Q 004369 489 QVTFVGALAACSNAGMVYEALGYFEMMQKEYKI--KPVM--DHY-MCLIDMFVRLGCIEEAFDFIKKM 551 (758)
Q Consensus 489 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~p~~--~~~-~~li~~~~~~g~~~~A~~~~~~m 551 (758)
...++.+++.|.+.+.+++|..+..... +.. .++. ..| -.+...+.-.+++.+|.+.+..+
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 4567777888888888888888887663 111 1221 122 23456667778888888777765
No 329
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=22.94 E-value=2.7e+02 Score=24.82 Aligned_cols=20 Identities=10% Similarity=0.107 Sum_probs=13.4
Q ss_pred HHHhhcCCChHHHHHHHccC
Q 004369 116 VNVYGKCGNMEEAQKVFDNL 135 (758)
Q Consensus 116 i~~~~~~g~~~~A~~~f~~~ 135 (758)
+...++.|+++....+++.-
T Consensus 10 l~~A~~~g~~~~v~~ll~~~ 29 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILAD 29 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHHC
T ss_pred HHHHHHhCCHHHHHHHHHhc
Confidence 44456677888777777654
No 330
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=22.87 E-value=1.1e+02 Score=23.72 Aligned_cols=39 Identities=15% Similarity=0.222 Sum_probs=32.3
Q ss_pred CCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHH
Q 004369 437 GRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQALQ 475 (758)
Q Consensus 437 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 475 (758)
...+.|.++++.++.++...|..++.++...|+..-|..
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~l 89 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLASF 89 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHHH
Confidence 468899999999999999999999999987777665543
No 331
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4
Probab=22.86 E-value=27 Score=29.07 Aligned_cols=41 Identities=12% Similarity=0.135 Sum_probs=30.0
Q ss_pred CCcEEEEe----ccccCCchhHHHHHHhhhcCCeEEEecCCccccccCccccc
Q 004369 703 VSPILVVK----STTMCRDCHNFIKIITSLTAREIIVRDSKRLHKFVNGHCTC 751 (758)
Q Consensus 703 ~~~~~~~~----n~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~h~~~~g~cs~ 751 (758)
...+||+. +.++|-+| .+...-..-.+.-+||+|+++.|-.
T Consensus 44 ~~~~Riv~~~~~~~~vi~n~--------~i~~~~~y~~~~~~Fh~w~~~~~~~ 88 (130)
T 1qc6_A 44 SSTFRVVGVKLQDQQVVINY--------SIVKGLKYNQATPTFHQWRDARQVY 88 (130)
T ss_dssp TTEEEEEEECTTTCCEEEEE--------ECCTTCEEEEEETTEEEEECSSCEE
T ss_pred CcEEEEEEEeCCCCeEEEee--------EEeCCcEEeccCCeeEEEEcCCEEE
Confidence 55678774 57777777 4555555567999999999998754
No 332
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=22.30 E-value=2.4e+02 Score=27.37 Aligned_cols=27 Identities=11% Similarity=0.191 Sum_probs=20.7
Q ss_pred HHHHHHHhhcCChHHHHHHHhccCCCC
Q 004369 214 NSLCSLYSTCGSLNSAIKAFNRIREKN 240 (758)
Q Consensus 214 ~~Li~~y~~~g~~~~A~~~f~~~~~~~ 240 (758)
..++.-|...|+.++|...++++..|.
T Consensus 7 ~~ii~EYf~~~d~~Ea~~~l~el~~p~ 33 (307)
T 2zu6_B 7 TPIIQEYFEHGDTNEVAEMLRDLNLGE 33 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCcc
Confidence 456777778888888888888887654
No 333
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=22.29 E-value=3.3e+02 Score=24.61 Aligned_cols=47 Identities=17% Similarity=0.306 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhhhhcCCCCCH-HH-----HHHHHHHHHHcCCHHHHHHHHHHc
Q 004369 505 VYEALGYFEMMQKEYKIKPVM-DH-----YMCLIDMFVRLGCIEEAFDFIKKM 551 (758)
Q Consensus 505 ~~~a~~~~~~~~~~~~~~p~~-~~-----~~~li~~~~~~g~~~~A~~~~~~m 551 (758)
++.|..+|+.+.+...+..+. +. --..+-.|.+.|.+++|.+++++.
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~ 140 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKH 140 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 456666666666543222111 11 112344566777777777777766
No 334
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=21.58 E-value=2.9e+02 Score=25.95 Aligned_cols=21 Identities=19% Similarity=0.023 Sum_probs=13.0
Q ss_pred HHHHHHHhcCCHHHHHHHHcc
Q 004369 316 SIMYLYLKCGLVDEAQKLFDG 336 (758)
Q Consensus 316 ~li~~~~~~g~~~~A~~~~~~ 336 (758)
+.+...++.|+.+-+.-+++.
T Consensus 224 t~L~~A~~~~~~~~v~~Ll~~ 244 (285)
T 3d9h_A 224 SPLHAVVRTASEELACLLMDF 244 (285)
T ss_dssp CHHHHHHHTTCHHHHHHHHHT
T ss_pred CHHHHHHHcCCHHHHHHHHHC
Confidence 344455667777776666654
No 335
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=20.99 E-value=5.5e+02 Score=24.54 Aligned_cols=80 Identities=8% Similarity=-0.029 Sum_probs=33.7
Q ss_pred HHhcCCHHHHHHHHHhcC----CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccHHHH
Q 004369 433 YKKCGRIERASRVFVEMS----TRTLISWTSMITGFANHSLSHQALQLFEDMLLAGVRPNQVTFVGALAACSNAGMVYEA 508 (758)
Q Consensus 433 y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 508 (758)
.+..|..+.+..+++.-. .+|..-++.|..+ ++.|+.+ +.+.+++.|..||..+ .+. ...+.|..+-+
T Consensus 246 a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A-~~~g~~~----iv~~Ll~~GAd~n~~~--~L~-~A~~~~~~~iv 317 (337)
T 4g8k_A 246 AVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLA-VELKLKK----IAELLCKRGASTDCGD--LVM-TARRNYDHSLV 317 (337)
T ss_dssp HHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHH-HHTTCHH----HHHHHHTTSCSSTTCC--HHH-HHHHTTCHHHH
T ss_pred HHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHH-HHcCCHH----HHHHHHHCCCCCCCCC--HHH-HHHHcCCHHHH
Confidence 344555555555544211 1222223333332 3445543 3444456676666543 222 22344554433
Q ss_pred HHHHHHhhhhcCCCCCH
Q 004369 509 LGYFEMMQKEYKIKPVM 525 (758)
Q Consensus 509 ~~~~~~~~~~~~~~p~~ 525 (758)
+.+.+ +|-.||.
T Consensus 318 ----~~Ll~-~GA~~d~ 329 (337)
T 4g8k_A 318 ----KVLLS-HGAKEDF 329 (337)
T ss_dssp ----HHHHH-TTCCC--
T ss_pred ----HHHHH-CcCCCCC
Confidence 33333 3655553
No 336
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=20.72 E-value=2.1e+02 Score=23.55 Aligned_cols=16 Identities=0% Similarity=-0.074 Sum_probs=8.1
Q ss_pred HHhCCCchHHHHHHHH
Q 004369 150 YVQNSQPELAIHVFLD 165 (758)
Q Consensus 150 ~~~~g~~~~A~~~~~~ 165 (758)
.++.|+.+.+..+++.
T Consensus 9 A~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 9 AAARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHHTCHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHh
Confidence 3445555555555444
No 337
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=20.60 E-value=2.8e+02 Score=20.95 Aligned_cols=61 Identities=15% Similarity=0.146 Sum_probs=40.5
Q ss_pred HHHHHHHHcCCCChHHHHhHHhhhHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHH
Q 004369 409 QIHALTLKTGFLSDVVVGTALVNMYKKCGRIERASRVFVEMSTRTLISWTSMITGFANHSLSHQA 473 (758)
Q Consensus 409 ~i~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 473 (758)
.++..+.+.|+-.....-. +- ......++|.++++.+..++...|..++.++.+.+...-|
T Consensus 26 ~lld~L~~~~vlt~~~~e~-I~---~~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 26 YIMDHMISDGFLTISEEEK-VR---NEPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp HHHHHHHHHTSSCHHHHHH-HH---TSSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHCCCCCHHHHHH-HH---cCCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHH
Confidence 4555555555433322221 11 1356788999999999999999999999998887765444
Done!