BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004370
(758 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SNH|A Chain A, Crystal Structure Of Nucleotide-Free Human Dynamin1
Length = 743
Score = 79.0 bits (193), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 78/357 (21%), Positives = 159/357 (44%), Gaps = 41/357 (11%)
Query: 5 MISKYVERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMD-QAEG-DS 62
M+ ++V + + ++L + PA D+++ AL++AKE D RT+G+I+K+D EG D+
Sbjct: 156 MLMQFVTKENCLILAVSPANS--DLANSDALKVAKEVDPQGQRTIGVITKLDLMDEGTDA 213
Query: 63 KALAAVRALLLNQGPPKTSDIPWVAVIGQSVAISSVTSSGAAADSSLEAAWRAEVETLKR 122
+ + + L L +G ++ V+ +S + AA AE ++
Sbjct: 214 RDVLENKLLPLRRG--------YIGVVNRS-------QKDIDGKKDITAALAAE----RK 254
Query: 123 LLSGAPQ-----NKLGRVALVDTIAGQIRNRMSLRVPKLLSGLQGKSQIVQDELLKLGDQ 177
P +++G L + Q+ N + +P L + LQ + ++ E+ + +
Sbjct: 255 FFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVEEYKNF 314
Query: 178 ILEN-TEGTKALALQLCREFEDKFLQHITGGE--------GNGWKVVASFEGNFPNRMKQ 228
++ TKAL LQ+ ++F F + I G G ++ F FP + +
Sbjct: 315 RPDDPARKTKAL-LQMVQQFAVDFEKRIEGSGDQIDTYELSGGARINRIFHERFPFELVK 373
Query: 229 LPLDRHFDMKNVKRVVLEADGYQPYLISPEKGLRSLIKSVLEMAKEPSRLCVDEVHRVLV 288
+ D + + + A L +P+ +++K ++ +EP CVD V+
Sbjct: 374 MEFDEKELRREISYAIKNAAAAATGLFTPDMAFETIVKKQVKKIREPCLKCVD---MVIS 430
Query: 289 DIVSAAANATPGLGRYPPFKREVVEIASAALDRFKSDAKKMVVALVDMERVFVPPQH 345
+++S T L +YP + E+ I + + + K+ V+ L+D+E ++ H
Sbjct: 431 ELISTVRQCTKKLQQYPRLREEMERIVTTHIREREGRTKEQVMLLIDIELAYMNTNH 487
>pdb|3ZVR|A Chain A, Crystal Structure Of Dynamin
Length = 772
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 79/357 (22%), Positives = 158/357 (44%), Gaps = 41/357 (11%)
Query: 5 MISKYVERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMD-QAEG-DS 62
M+ ++V + + ++L + PA D+++ AL+IAKE D RT+G+I+K+D EG D+
Sbjct: 179 MLMQFVTKENCLILAVSPANS--DLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDA 236
Query: 63 KALAAVRALLLNQGPPKTSDIPWVAVIGQSVAISSVTSSGAAADSSLEAAWRAEVETLKR 122
+ + + L L +G ++ V+ +S + AA AE ++
Sbjct: 237 RDVLENKLLPLRRG--------YIGVVNRS-------QKDIDGKKDITAALAAE----RK 277
Query: 123 LLSGAPQ-----NKLGRVALVDTIAGQIRNRMSLRVPKLLSGLQGKSQIVQDELLKLGDQ 177
P +++G L + Q+ N + +P L + LQ + ++ E+ + +
Sbjct: 278 FFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVDEYKNF 337
Query: 178 ILEN-TEGTKALALQLCREFEDKFLQHITGGE--------GNGWKVVASFEGNFPNRMKQ 228
++ TKAL LQ+ ++F F + I G G ++ F FP + +
Sbjct: 338 RPDDPARKTKAL-LQMVQQFAVDFEKRIEGSGDQIDTYELSGGARINRIFHERFPFELVK 396
Query: 229 LPLDRHFDMKNVKRVVLEADGYQPYLISPEKGLRSLIKSVLEMAKEPSRLCVDEVHRVLV 288
+ D + + + + L +P+ + +K ++ KEPS CVD V+
Sbjct: 397 MEFDEKELRREISYAIKNIHDIRTGLFTPDLAFEATVKKQVQKLKEPSIKCVD---MVVS 453
Query: 289 DIVSAAANATPGLGRYPPFKREVVEIASAALDRFKSDAKKMVVALVDMERVFVPPQH 345
++ S + L +YP + E+ I + + + K+ V+ L+D+E ++ H
Sbjct: 454 ELTSTIRKCSEKLQQYPRLREEMERIVTTHIREREGRTKEQVMLLIDIELAYMNTNH 510
>pdb|3T34|A Chain A, Arabidopsis Thaliana Dynamin-Related Protein 1a (Atdrp1a)
In Prefission State
pdb|3T34|B Chain B, Arabidopsis Thaliana Dynamin-Related Protein 1a (Atdrp1a)
In Prefission State
pdb|3T35|A Chain A, Arabidopsis Thaliana Dynamin-Related Protein 1a In
Postfission State
pdb|3T35|B Chain B, Arabidopsis Thaliana Dynamin-Related Protein 1a In
Postfission State
pdb|3T35|C Chain C, Arabidopsis Thaliana Dynamin-Related Protein 1a In
Postfission State
pdb|3T35|D Chain D, Arabidopsis Thaliana Dynamin-Related Protein 1a In
Postfission State
Length = 360
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 83/179 (46%), Gaps = 14/179 (7%)
Query: 5 MISKYVERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAEGDSKA 64
M+ Y+E+ + ++L I PA Q D+++ A++I++E D RT G+++K+D + K
Sbjct: 165 MVRSYIEKPNCIILAISPANQ--DLATSDAIKISREVDPSGDRTFGVLTKIDLMD---KG 219
Query: 65 LAAVRALLLNQGPPKTSDIPWVAVIGQSVAISSVTSSGAAADSSLEAAWRAEVETLKRLL 124
AV L +G PWV V+ +S A + AA E + + + L
Sbjct: 220 TDAVEIL---EGRSFKLKYPWVGVVNRSQADINKNVDMIAARKR-EREYFSNTTEYRHL- 274
Query: 125 SGAPQNKLGRVALVDTIAGQIRNRMSLRVPKLLSGLQGKSQIVQDELLKLGDQILENTE 183
NK+G L ++ + + R+P + S + ++ EL +LG I T+
Sbjct: 275 ----ANKMGSEHLAKMLSKHLERVIKSRIPGIQSLINKTVLELETELSRLGKPIAHGTD 329
>pdb|1JWY|B Chain B, Crystal Structure Of The Dynamin A Gtpase Domain Complexed
With Gdp, Determined As Myosin Fusion
pdb|1JX2|B Chain B, Crystal Structure Of The Nucleotide-Free Dynamin A Gtpase
Domain, Determined As Myosin Fusion
Length = 315
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 84/169 (49%), Gaps = 27/169 (15%)
Query: 5 MISKYVERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAEGDSKA 64
M+ Y+++ +A+++ + PA D+++ AL++AKE D + RT+G+I+K+D + + A
Sbjct: 160 MVMAYIKKQNAIIVAVTPANT--DLANSDALQLAKEVDPEGKRTIGVITKLDLMDKGTDA 217
Query: 65 LAAV--RALLLNQGPPKTSDIPWVAVIGQSVAISSVTSSGAAADSSLEAAWRAEVETLK- 121
+ + R + L G ++ VI +S A S+ + ++E+ K
Sbjct: 218 MEVLTGRVIPLTLG--------FIGVINRS-------QEDIIAKKSIRESLKSEILYFKN 262
Query: 122 RLLSGAPQNKLGRVALVDT----IAGQIRNR---MSLRVPKLLSGLQGK 163
+ + N+ G L T + IR+ + ++V K+LS +QG+
Sbjct: 263 HPIYKSIANRSGTAYLSKTLNKLLMFHIRDTLPDLKVKVSKMLSDVQGE 311
>pdb|3ZYS|B Chain B, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
pdb|3ZYS|E Chain E, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
Length = 662
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 45/73 (61%), Gaps = 4/73 (5%)
Query: 4 AMISKYVERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAE--GD 61
+I KY++R + + LV++P+ D+++ AL +A+E D + RT+GI++K D + +
Sbjct: 200 TLIKKYIQRQETISLVVVPSN--VDIATTEALSMAQEVDPEGDRTIGILTKPDLVDKGTE 257
Query: 62 SKALAAVRALLLN 74
K + VR L+ +
Sbjct: 258 DKVVDVVRNLVFH 270
>pdb|3SZR|A Chain A, Crystal Structure Of Modified Nucleotide-Free Human Mxa
Length = 608
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 45/73 (61%), Gaps = 4/73 (5%)
Query: 4 AMISKYVERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAE--GD 61
+I KY++R + + LV++P+ D+++ AL +A+E D + RT+GI++K D + +
Sbjct: 175 TLIKKYIQRQETISLVVVPSN--VDIATTEALSMAQEVDPEGDRTIGILTKPDLVDKGTE 232
Query: 62 SKALAAVRALLLN 74
K + VR L+ +
Sbjct: 233 DKVVDVVRNLVFH 245
>pdb|3L43|A Chain A, Crystal Structure Of The Dynamin 3 Gtpase Domain Bound
With Gdp
pdb|3L43|B Chain B, Crystal Structure Of The Dynamin 3 Gtpase Domain Bound
With Gdp
pdb|3L43|C Chain C, Crystal Structure Of The Dynamin 3 Gtpase Domain Bound
With Gdp
pdb|3L43|D Chain D, Crystal Structure Of The Dynamin 3 Gtpase Domain Bound
With Gdp
Length = 319
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 78/166 (46%), Gaps = 28/166 (16%)
Query: 5 MISKYVERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMD-QAEG-DS 62
MI +++ R + ++L + PA D+++ AL++AKE D RT+G+I+K+D EG D+
Sbjct: 172 MIMQFITRENCLILAVTPANT--DLANSDALKLAKEVDPQGLRTIGVITKLDLMDEGTDA 229
Query: 63 KALAAVRALLLNQGPPKTSDIPWVAVIGQSVAISSVTSSGAAADSSLEAAWRAEVETLKR 122
+ + + L L +G +V V+ +S ++AA AE ++
Sbjct: 230 RDVLENKLLPLRRG--------YVGVVNRS-------QKDIDGKKDIKAAMLAE----RK 270
Query: 123 LLSGAP-----QNKLGRVALVDTIAGQIRNRMSLRVPKLLSGLQGK 163
P +++G L + Q+ N + +P + LQG+
Sbjct: 271 FFLSHPAYRHIADRMGTPHLQKVLNQQLTNHIRDTLPNFRNKLQGQ 316
>pdb|2AKA|B Chain B, Structure Of The Nucleotide-Free Myosin Ii Motor Domain
From Dictyostelium Discoideum Fused To The Gtpase Domain
Of Dynamin 1 From Rattus Norvegicus
Length = 299
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 35/52 (67%), Gaps = 2/52 (3%)
Query: 5 MISKYVERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMD 56
M+ ++V + + ++L + PA D+++ AL+IAKE D RT+G+I+K+D
Sbjct: 154 MLMQFVTKENCLILAVSPANS--DLANSDALKIAKEVDPQGQRTIGVITKLD 203
>pdb|3ZYC|A Chain A, Dynamin 1 Gtpase Ged Fusion Dimer Complexed With Gmppcp
pdb|3ZYC|D Chain D, Dynamin 1 Gtpase Ged Fusion Dimer Complexed With Gmppcp
pdb|3ZYS|A Chain A, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
pdb|3ZYS|D Chain D, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
Length = 353
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 35/52 (67%), Gaps = 2/52 (3%)
Query: 5 MISKYVERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMD 56
M+ ++V + + ++L + PA D+++ AL++AKE D RT+G+I+K+D
Sbjct: 159 MLMQFVTKENCLILAVSPANS--DLANSDALKVAKEVDPQGQRTIGVITKLD 208
>pdb|2X2E|A Chain A, Dynamin Gtpase Dimer, Long Axis Form
pdb|2X2E|D Chain D, Dynamin Gtpase Dimer, Long Axis Form
pdb|2X2F|A Chain A, Dynamin 1 Gtpase Dimer, Short Axis Form
pdb|2X2F|D Chain D, Dynamin 1 Gtpase Dimer, Short Axis Form
Length = 353
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 34/51 (66%), Gaps = 2/51 (3%)
Query: 6 ISKYVERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMD 56
+ ++V + + ++L + PA D+++ AL++AKE D RT+G+I+K+D
Sbjct: 160 LXQFVTKENCLILAVSPANS--DLANSDALKVAKEVDPQGQRTIGVITKLD 208
>pdb|2D9X|A Chain A, Solution Structure Of The Ph Domain Of Oxysterol Binding
Protein-Related Protein 11 From Human
Length = 120
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 415 TAGPGGEITAGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQEERH 461
++G GE G+L+K ++ GW R+FVLN + G L Y ++ R+
Sbjct: 2 SSGSSGENVYGYLMKYTNLVTGWQYRFFVLNNEAGLLEYFVNEQSRN 48
>pdb|2DN6|A Chain A, Solution Structure Of The Ph Domain Of Kiaa0640 Protein
From Human
Length = 115
Score = 37.0 bits (84), Expect = 0.043, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 415 TAGPGGEITAGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQEERHFRGVVTLEE 470
++G G + G+++KK + W++RWFVL K + Y ++ + +G + L+E
Sbjct: 2 SSGSSGVLKQGYMMKKGHRRKNWTERWFVL--KPNIISYYVSEDLKDKKGDILLDE 55
>pdb|1V89|A Chain A, Solution Structure Of The Pleckstrin Homology Domain Of
Human Kiaa0053 Protein
Length = 118
Score = 35.8 bits (81), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 415 TAGPGGEITAGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQEERHFRGVVTLEECYI 473
++G G I G+L K+ S W +R+FVL + +L Y K +E+ +G + L C I
Sbjct: 2 SSGSSGPIKMGWLKKQRSIVKNWQQRYFVL--RAQQLYYYKDEEDTKPQGCMYLPGCTI 58
>pdb|1V5U|A Chain A, Solution Structure Of The C-Terminal Pleckstrin Homology
Domain Of Sbf1 From Mouse
Length = 117
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 425 GFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQEERHFRGVVTLEE 470
G L KK + W RWFVL++ +L Y + + +GV+ L E
Sbjct: 12 GILYKKGAFMKPWKARWFVLDKTKHQLRYYDHRMDTECKGVIDLAE 57
>pdb|1EAZ|A Chain A, Crystal Structure Of The Phosphoinositol
(3,4)-Bisphosphate Binding Ph Domain Of Tapp1 From Human
Length = 125
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 422 ITAGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQEERHFRGVVTLEECY 472
I AG+ +K+ + W +R+F L+E T +GY K + E+ V+ L+E +
Sbjct: 15 IKAGYCVKQGAVMKNWKRRYFQLDENT--IGYFKSELEKEPLRVIPLKEVH 63
>pdb|2R0D|A Chain A, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
pdb|2R0D|B Chain B, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
Length = 347
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 425 GFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQEERHFRGVVTLEECYI 473
G+LLK + W +RWF+L + L Y + ++ RG++ LE I
Sbjct: 217 GWLLKLGGRVKTWKRRWFILTDNC--LYYFEYTTDKEPRGIIPLENLSI 263
>pdb|2R09|A Chain A, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
pdb|2R09|B Chain B, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
Length = 347
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 425 GFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQEERHFRGVVTLEECYI 473
G+LLK + W +RWF+L + L Y + ++ RG++ LE I
Sbjct: 217 GWLLKLGGRVKTWKRRWFILTDNC--LYYFEYTTDKEPRGIIPLENLSI 263
>pdb|1FGY|A Chain A, Grp1 Ph Domain With Ins(1,3,4,5)p4
pdb|1FGZ|A Chain A, Grp1 Ph Domain (Unliganded)
Length = 127
Score = 34.3 bits (77), Expect = 0.27, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 425 GFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQEERHFRGVVTLEECYI 473
G+LLK + W +RWF+L + L Y + ++ RG++ LE I
Sbjct: 9 GWLLKLGGRVKTWKRRWFILTDNC--LYYFEYTTDKEPRGIIPLENLSI 55
>pdb|1FHW|A Chain A, Structure Of The Pleckstrin Homology Domain From Grp1 In
Complex With Inositol(1,3,4,5,6)pentakisphosphate
pdb|1FHW|B Chain B, Structure Of The Pleckstrin Homology Domain From Grp1 In
Complex With Inositol(1,3,4,5,6)pentakisphosphate
Length = 129
Score = 33.9 bits (76), Expect = 0.34, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 425 GFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQEERHFRGVVTLEECYI 473
G+LLK + W +RWF+L + L Y + ++ RG++ LE I
Sbjct: 7 GWLLKLGGRVKTWKRRWFILTDNC--LYYFEYTTDKEPRGIIPLENLSI 53
>pdb|2YRY|A Chain A, Solution Structure Of The Ph Domain Of Pleckstrin Homology
Domain-Containing Family A Member 6 From Human
Length = 122
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 417 GPGGEIT-AGFLLKK-SSKTNGWSKRWFVLNEKTGKLGYTKKQEERHFRGVVTL 468
P +T AG+L K+ SS W+KRWFVL ++ L Y K ++E G + L
Sbjct: 17 NPNAPVTKAGWLFKQASSGVKQWNKRWFVLVDRC--LFYYKDEKEESILGSIPL 68
>pdb|1FHX|A Chain A, Structure Of The Pleckstrin Homology Domain From Grp1 In
Complex With Inositol 1,3,4,5-Tetrakisphosphate
pdb|1FHX|B Chain B, Structure Of The Pleckstrin Homology Domain From Grp1 In
Complex With Inositol 1,3,4,5-Tetrakisphosphate
Length = 129
Score = 33.9 bits (76), Expect = 0.38, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 425 GFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQEERHFRGVVTLEECYI 473
G+LLK + W +RWF+L + L Y + ++ RG++ LE I
Sbjct: 7 GWLLKLGGRVKTWKRRWFILTDNC--LYYFEYTTDKEPRGIIPLENLSI 53
>pdb|2KCJ|A Chain A, Solution Structure Of Fapp1 Ph Domain
Length = 108
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Query: 417 GPGG--EITAGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQEE--RHFRGVVTLEECY 472
GP G E G L K ++ GW RWFVL+ G L Y Q++ + +G + + C
Sbjct: 1 GPLGSPEFMEGVLYKWTNYLTGWQPRWFVLD--NGILSYYDSQDDVCKGSKGSIKMAVCE 58
Query: 473 I 473
I
Sbjct: 59 I 59
>pdb|2D9Y|A Chain A, Solution Structure Of The Ph Domain Of Pepp-3 From Human
Length = 117
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 424 AGFLLKK-SSKTNGWSKRWFVLNEKTGKLGYTKKQEERHFRGVVTL 468
AG+L K+ SS W+KRWFVL ++ L Y K ++E G + L
Sbjct: 14 AGWLFKQASSGVKQWNKRWFVLVDRC--LFYYKDEKEESILGSIPL 57
>pdb|2RSG|A Chain A, Solution Structure Of The Cert Ph Domain
Length = 94
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 425 GFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQEERHF--RGVVTLEECYI 473
G L K ++ +GW RW VL K L Y K ++E + RG + L + I
Sbjct: 5 GVLSKWTNYIHGWQDRWVVL--KNNALSYYKSEDETEYGCRGSICLSKAVI 53
>pdb|3TFM|A Chain A, Myosin X Ph1n-Ph2-Ph1c Tandem
Length = 228
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 417 GPGGEITAGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQE 458
GPG FL N W +RW VL ++T L + KQE
Sbjct: 17 GPGSPYFHSFLYMNGGLMNSWKRRWCVLKDETF-LWFRSKQE 57
>pdb|2DHK|A Chain A, Solution Structure Of The Ph Domain Of Tbc1 Domain Family
Member 2 Protein From Human
Length = 119
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 415 TAGPGGEITAGFLLKKSSK--TNGWSKRWFVLNEKTGKLGYTKKQEE 459
++G G+ G+L K K GW RWF +E+ +L Y++ ++
Sbjct: 2 SSGSSGKKLCGYLSKFGGKGPIRGWKSRWFFYDERKCQLYYSRTAQD 48
>pdb|3PCS|A Chain A, Structure Of Espg-Pak2 Autoinhibitory Ialpha3 Helix
Complex
pdb|3PCS|B Chain B, Structure Of Espg-Pak2 Autoinhibitory Ialpha3 Helix
Complex
pdb|3PCS|C Chain C, Structure Of Espg-Pak2 Autoinhibitory Ialpha3 Helix
Complex
pdb|3PCS|D Chain D, Structure Of Espg-Pak2 Autoinhibitory Ialpha3 Helix
Complex
Length = 357
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 209 GNGWKVVASFEGNFPNRMKQ-LPLDRHFDMKNVKRVVLEAD 248
N K+ E N NR+ Q LP+DRH V R + E D
Sbjct: 81 ANNEKITVLLESNEQNRLLQSLPIDRHMPYIQVHRALSEMD 121
>pdb|4FMD|A Chain A, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|C Chain C, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|E Chain E, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|A Chain A, Espg-Rab1-Arf6 Complex
pdb|4FME|D Chain D, Espg-Rab1-Arf6 Complex
Length = 351
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 210 NGWKVVASFEGNFPNRMKQ-LPLDRHFDMKNVKRVVLEAD 248
N K+ E N NR+ Q LP+DRH V R + E D
Sbjct: 77 NNEKITVLLESNEQNRLLQSLPIDRHMPYIQVHRALSEMD 116
>pdb|4FMC|A Chain A, Espg-Rab1 Complex
pdb|4FMC|C Chain C, Espg-Rab1 Complex
pdb|4FMC|E Chain E, Espg-Rab1 Complex
Length = 351
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 210 NGWKVVASFEGNFPNRMKQ-LPLDRHFDMKNVKRVVLEAD 248
N K+ E N NR+ Q LP+DRH V R + E D
Sbjct: 77 NNEKITVLLESNEQNRLLQSLPIDRHMPYIQVHRALSEMD 116
>pdb|2D9V|A Chain A, Solution Structure Of The Ph Domain Of Pleckstrin Homology
Domain-Containing Protein Family B Member 1 From Mouse
Length = 130
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 11/67 (16%)
Query: 415 TAGPGGEITAGFLLKKSSKTNGWSKRWFVLNEKTGKLGY-----TKKQEER---HF--RG 464
++G G + G+L ++SS W + WF L G LGY + +E+R HF R
Sbjct: 2 SSGSSGLVRGGWLWRQSSILRRWKRNWFAL-WLDGTLGYYHDETAQDEEDRVVIHFNVRD 60
Query: 465 VVTLEEC 471
+ +EC
Sbjct: 61 IKVGQEC 67
>pdb|1U2B|A Chain A, Triglycine Variant Of The Grp1 Pleckstrin Homology Domain
Unliganded
Length = 138
Score = 30.0 bits (66), Expect = 5.4, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 425 GFLLK-KSSKTNGWSKRWFVLNEKTGKLGYTKKQEERHFRGVVTLEECYI 473
G+LLK + W +RWF+L + L Y + ++ RG++ LE I
Sbjct: 19 GWLLKLGGGRVKTWKRRWFILTDNC--LYYFEYTTDKEPRGIIPLENLSI 66
>pdb|1PLS|A Chain A, Solution Structure Of A Pleckstrin Homology Domain
Length = 113
Score = 30.0 bits (66), Expect = 5.5, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 422 ITAGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQEERHFRGVVTLE 469
I G+L+KK S N W W VL E + + KK+ + +G++ L+
Sbjct: 6 IREGYLVKKGSVFNTWKPMWVVLLED--GIEFYKKKSDNSPKGMIPLK 51
>pdb|1U27|A Chain A, Triglycine Variant Of The Arno Pleckstrin Homology Domain
In Complex With Ins(1,3,4,5)p4
pdb|1U29|A Chain A, Triglycine Variant Of The Arno Pleckstrin Homology Domain
In Complex With Ins(1,4,5)p3
Length = 129
Score = 29.6 bits (65), Expect = 6.3, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 425 GFLLK-KSSKTNGWSKRWFVLNEKTGKLGYTKKQEERHFRGVVTLEECYI 473
G+LLK + W +RWF+L + L Y + ++ RG++ LE I
Sbjct: 15 GWLLKLGGGRVKTWKRRWFILTDNC--LYYFEYTTDKEPRGIIPLENLSI 62
>pdb|2DHI|A Chain A, Solution Structure Of The Ph Domain Of Evectin-2 From
Mouse
Length = 120
Score = 29.3 bits (64), Expect = 7.7, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 415 TAGPGGEITAGFLLKKSSKTNGWSKRWFVL 444
++G G + +G+LL++S+ W K WF L
Sbjct: 2 SSGSSGFVKSGWLLRQSTILKRWKKNWFDL 31
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 28.9 bits (63), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 141 IAGQIRNRMSLRVPKLLSGLQGKSQIVQDELLKLGDQILENTEGTKALALQLCR------ 194
IA +R + + L S L+G+ +VQ + ++ D L N EG AL +C
Sbjct: 27 IAHGMRVKFNPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIV 86
Query: 195 EFEDKFLQHITGGEGNGW 212
+F +F ++ + +GW
Sbjct: 87 KFLVQFGVNVNAADSDGW 104
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.130 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,122,490
Number of Sequences: 62578
Number of extensions: 788541
Number of successful extensions: 1723
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 1692
Number of HSP's gapped (non-prelim): 51
length of query: 758
length of database: 14,973,337
effective HSP length: 106
effective length of query: 652
effective length of database: 8,340,069
effective search space: 5437724988
effective search space used: 5437724988
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)