Query 004370
Match_columns 758
No_of_seqs 405 out of 1231
Neff 5.8
Searched_HMMs 46136
Date Thu Mar 28 22:17:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004370.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004370hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0446 Vacuolar sorting prote 100.0 2.2E-74 4.8E-79 668.3 36.8 481 2-663 158-651 (657)
2 PF01031 Dynamin_M: Dynamin ce 100.0 5.1E-53 1.1E-57 451.8 21.0 272 69-352 2-286 (295)
3 cd01256 PH_dynamin Dynamin ple 99.9 4.8E-26 1E-30 201.8 4.9 105 422-542 2-109 (110)
4 smart00302 GED Dynamin GTPase 99.8 2.4E-20 5.2E-25 167.5 11.6 87 575-663 4-90 (92)
5 smart00053 DYNc Dynamin, GTPas 99.7 2E-18 4.3E-23 180.2 8.3 87 3-105 152-239 (240)
6 cd01251 PH_centaurin_alpha Cen 99.7 1E-18 2.2E-23 159.9 5.3 96 423-540 1-101 (103)
7 cd01233 Unc104 Unc-104 pleckst 99.7 3.4E-18 7.5E-23 155.5 4.8 96 422-539 3-98 (100)
8 cd01265 PH_PARIS-1 PARIS-1 ple 99.7 7.3E-18 1.6E-22 152.1 5.4 89 424-537 2-92 (95)
9 cd01235 PH_SETbf Set binding f 99.7 8.8E-18 1.9E-22 151.5 5.8 99 423-539 1-101 (101)
10 PF02212 GED: Dynamin GTPase e 99.7 4.9E-17 1.1E-21 146.0 9.4 88 574-663 3-90 (92)
11 cd01252 PH_cytohesin Cytohesin 99.7 9.8E-18 2.1E-22 158.2 5.1 103 422-541 1-115 (125)
12 cd01260 PH_CNK Connector enhan 99.7 1.1E-17 2.3E-22 150.4 4.3 91 423-538 2-96 (96)
13 KOG0447 Dynamin-like GTP bindi 99.7 5.1E-15 1.1E-19 164.0 22.9 267 4-292 440-725 (980)
14 KOG0930 Guanine nucleotide exc 99.7 2.2E-17 4.9E-22 170.2 4.2 115 422-540 261-376 (395)
15 cd01238 PH_Tec Tec pleckstrin 99.7 4E-17 8.8E-22 150.2 4.5 98 422-538 1-106 (106)
16 cd01247 PH_GPBP Goodpasture an 99.6 7.4E-17 1.6E-21 144.6 4.5 87 423-536 1-89 (91)
17 cd01266 PH_Gab Gab (Grb2-assoc 99.6 2.6E-16 5.7E-21 145.0 5.5 98 423-538 1-107 (108)
18 cd01264 PH_melted Melted pleck 99.6 2.3E-16 5E-21 143.8 4.3 95 423-538 2-100 (101)
19 cd01257 PH_IRS Insulin recepto 99.6 8.3E-16 1.8E-20 140.4 4.8 88 422-536 3-99 (101)
20 cd01245 PH_RasGAP_CG5898 RAS G 99.6 8.5E-16 1.9E-20 139.4 4.5 94 423-537 1-97 (98)
21 cd01236 PH_outspread Outspread 99.6 1.3E-15 2.8E-20 139.8 4.7 90 423-536 1-101 (104)
22 cd01246 PH_oxysterol_bp Oxyste 99.5 7.1E-15 1.5E-19 129.2 4.0 89 423-538 1-91 (91)
23 cd01250 PH_centaurin Centaurin 99.5 2.9E-14 6.3E-19 126.0 4.7 90 423-537 1-93 (94)
24 cd01241 PH_Akt Akt pleckstrin 99.5 3.6E-14 7.8E-19 129.7 4.8 100 422-538 2-101 (102)
25 PF00169 PH: PH domain; Inter 99.4 7.8E-14 1.7E-18 123.0 4.4 99 422-539 2-103 (104)
26 cd01244 PH_RasGAP_CG9209 RAS_G 99.4 1.4E-13 2.9E-18 125.3 4.4 79 434-537 18-97 (98)
27 cd01263 PH_anillin Anillin Ple 99.3 1.3E-12 2.9E-17 123.1 3.3 101 423-537 3-121 (122)
28 PF15409 PH_8: Pleckstrin homo 99.3 2.4E-12 5.2E-17 114.7 4.4 87 425-538 1-88 (89)
29 cd01219 PH_FGD FGD (faciogenit 99.3 4.2E-12 9.2E-17 115.9 4.4 93 422-540 3-100 (101)
30 cd01254 PH_PLD Phospholipase D 99.2 4.8E-12 1E-16 119.3 4.6 88 435-537 31-120 (121)
31 cd01220 PH_CDEP Chondrocyte-de 99.2 1.3E-11 2.8E-16 112.5 4.3 92 422-540 3-98 (99)
32 PF15413 PH_11: Pleckstrin hom 99.2 2.2E-11 4.8E-16 113.3 4.9 105 423-538 1-112 (112)
33 cd01253 PH_beta_spectrin Beta- 99.2 2.2E-11 4.7E-16 111.0 4.5 80 434-537 20-103 (104)
34 cd01237 Unc112 Unc-112 pleckst 99.1 1.1E-10 2.3E-15 107.0 4.5 86 433-539 16-103 (106)
35 smart00233 PH Pleckstrin homol 99.0 2.7E-10 5.8E-15 98.5 4.9 96 422-539 2-101 (102)
36 cd00821 PH Pleckstrin homology 98.9 1.1E-09 2.4E-14 93.8 4.5 91 423-537 1-95 (96)
37 cd01230 PH_EFA6 EFA6 Pleckstri 98.8 4E-09 8.7E-14 99.1 5.2 83 434-540 23-112 (117)
38 cd00900 PH-like Pleckstrin hom 98.8 4.3E-09 9.2E-14 90.9 4.3 92 424-537 2-98 (99)
39 COG0699 Predicted GTPases (dyn 98.7 1.4E-07 2.9E-12 108.5 13.6 290 3-351 80-372 (546)
40 KOG1090 Predicted dual-specifi 98.7 1.1E-08 2.5E-13 119.7 4.6 97 422-539 1635-1731(1732)
41 cd01234 PH_CADPS CADPS (Ca2+-d 98.5 5.5E-08 1.2E-12 88.2 1.9 95 422-538 3-110 (117)
42 PF15410 PH_9: Pleckstrin homo 98.3 4.6E-07 9.9E-12 85.3 3.7 81 433-537 22-116 (119)
43 cd01218 PH_phafin2 Phafin2 Pl 98.2 1.1E-06 2.3E-11 81.2 4.6 93 422-541 5-100 (104)
44 cd01242 PH_ROK Rok (Rho- assoc 98.0 4E-06 8.7E-11 77.4 4.3 100 423-539 2-110 (112)
45 cd01259 PH_Apbb1ip Apbb1ip (Am 98.0 6.6E-06 1.4E-10 76.1 4.0 104 423-540 2-109 (114)
46 KOG2059 Ras GTPase-activating 98.0 1.9E-05 4.1E-10 91.5 8.6 95 422-541 565-666 (800)
47 PF14593 PH_3: PH domain; PDB: 97.9 6.8E-06 1.5E-10 75.8 3.0 86 422-540 14-100 (104)
48 KOG0690 Serine/threonine prote 97.9 1.1E-05 2.3E-10 86.9 4.2 103 422-541 16-118 (516)
49 KOG3640 Actin binding protein 97.8 9.4E-06 2E-10 96.1 3.4 104 424-540 993-1107(1116)
50 cd01243 PH_MRCK MRCK (myotonic 97.8 1.5E-05 3.3E-10 74.7 3.9 103 422-536 3-116 (122)
51 KOG0521 Putative GTPase activa 97.8 0.00025 5.3E-09 85.8 14.5 97 420-541 273-370 (785)
52 cd01249 PH_oligophrenin Oligop 97.6 7E-05 1.5E-09 68.9 4.5 91 423-535 1-101 (104)
53 cd01261 PH_SOS Son of Sevenles 97.6 6.8E-05 1.5E-09 70.1 4.2 95 422-540 5-110 (112)
54 cd01239 PH_PKD Protein kinase 97.4 0.00014 2.9E-09 67.9 3.2 73 422-506 1-74 (117)
55 PF12814 Mcp5_PH: Meiotic cell 97.4 0.00027 5.9E-09 67.0 5.3 100 425-540 13-122 (123)
56 KOG1739 Serine/threonine prote 96.9 0.0011 2.3E-08 74.6 5.4 87 422-536 25-113 (611)
57 KOG3751 Growth factor receptor 96.9 0.00085 1.8E-08 76.0 4.4 105 422-541 318-426 (622)
58 KOG0248 Cytoplasmic protein Ma 96.9 0.00022 4.7E-09 82.5 -0.4 54 419-474 247-303 (936)
59 PTZ00267 NIMA-related protein 96.8 0.001 2.3E-08 76.3 4.1 98 422-539 378-476 (478)
60 PLN02866 phospholipase D 96.6 0.0019 4.2E-08 79.1 4.7 92 435-540 216-308 (1068)
61 KOG3531 Rho guanine nucleotide 96.5 0.0015 3.2E-08 77.3 3.2 96 422-540 925-1020(1036)
62 PLN00188 enhanced disease resi 96.4 0.0038 8.2E-08 74.0 5.1 98 422-541 5-111 (719)
63 cd01224 PH_Collybistin Collybi 96.3 0.0039 8.4E-08 58.1 3.9 97 422-535 3-103 (109)
64 cd01240 PH_beta-ARK Beta adren 96.0 0.0028 6E-08 58.6 1.2 96 421-540 3-99 (116)
65 cd01262 PH_PDK1 3-Phosphoinosi 95.8 0.0082 1.8E-07 53.9 3.3 84 422-538 2-87 (89)
66 KOG1117 Rho- and Arf-GTPase ac 95.3 0.008 1.7E-07 71.5 2.1 92 421-541 87-179 (1186)
67 cd01258 PH_syntrophin Syntroph 95.3 0.016 3.6E-07 53.9 3.6 95 425-536 3-106 (108)
68 PF15406 PH_6: Pleckstrin homo 95.0 0.015 3.2E-07 53.9 2.3 62 449-537 50-111 (112)
69 KOG0932 Guanine nucleotide exc 94.9 0.16 3.4E-06 58.7 10.6 94 422-536 507-614 (774)
70 KOG4424 Predicted Rho/Rac guan 94.8 0.023 4.9E-07 65.6 3.7 98 422-541 273-371 (623)
71 KOG1451 Oligophrenin-1 and rel 94.5 0.82 1.8E-05 53.3 14.8 93 421-535 265-363 (812)
72 cd01225 PH_Cool_Pix Cool (clon 94.4 0.044 9.5E-07 51.2 3.8 78 437-538 28-108 (111)
73 cd01222 PH_clg Clg (common-sit 94.4 0.049 1.1E-06 49.9 4.2 90 422-539 5-95 (97)
74 KOG1738 Membrane-associated gu 94.2 0.014 3E-07 67.9 0.4 54 422-477 563-619 (638)
75 KOG4807 F-actin binding protei 94.0 0.0098 2.1E-07 65.4 -1.5 79 436-541 34-116 (593)
76 KOG1737 Oxysterol-binding prot 93.1 0.052 1.1E-06 65.6 2.4 88 422-538 78-167 (799)
77 PTZ00283 serine/threonine prot 91.7 0.17 3.7E-06 58.7 4.3 37 495-539 453-489 (496)
78 cd01221 PH_ephexin Ephexin Ple 91.7 0.15 3.3E-06 48.8 3.2 37 496-535 82-118 (125)
79 KOG3543 Ca2+-dependent activat 91.7 0.04 8.7E-07 63.7 -0.8 97 422-540 465-567 (1218)
80 cd01226 PH_exo84 Exocyst compl 91.5 0.17 3.8E-06 46.6 3.2 74 440-539 23-98 (100)
81 KOG3723 PH domain protein Melt 91.3 0.094 2E-06 60.5 1.6 103 418-541 732-838 (851)
82 cd01232 PH_TRIO Trio pleckstri 91.0 0.22 4.8E-06 46.9 3.5 58 463-540 56-113 (114)
83 cd01248 PH_PLC Phospholipase C 90.7 0.34 7.4E-06 45.2 4.5 91 436-537 19-114 (115)
84 PF15404 PH_4: Pleckstrin homo 90.3 0.27 5.8E-06 50.1 3.7 50 423-474 1-61 (185)
85 cd05135 RasGAP_RASAL Ras GTPas 90.0 14 0.0003 41.2 17.0 75 251-337 211-285 (333)
86 KOG1117 Rho- and Arf-GTPase ac 87.6 0.56 1.2E-05 56.7 4.2 85 435-538 516-600 (1186)
87 cd01228 PH_BCR-related BCR (br 86.1 0.43 9.4E-06 43.5 1.8 82 422-537 4-92 (96)
88 KOG0248 Cytoplasmic protein Ma 85.7 1 2.2E-05 53.4 4.8 50 422-473 260-309 (936)
89 cd05128 RasGAP_GAP1_like The G 85.6 7.5 0.00016 43.0 11.5 24 422-445 287-315 (315)
90 KOG0705 GTPase-activating prot 85.4 1.2 2.7E-05 51.8 5.3 37 422-459 303-341 (749)
91 PF10662 PduV-EutP: Ethanolami 81.8 1.4 3E-05 43.3 3.4 54 14-74 64-117 (143)
92 TIGR03598 GTPase_YsxC ribosome 79.0 2.2 4.7E-05 42.2 3.8 55 4-61 89-145 (179)
93 cd01223 PH_Vav Vav pleckstrin 76.2 3.3 7.1E-05 39.3 3.9 65 461-540 48-112 (116)
94 cd05395 RasGAP_RASA4 Ras GTPas 74.7 58 0.0013 36.5 13.8 74 251-337 210-284 (337)
95 KOG4424 Predicted Rho/Rac guan 74.1 4.8 0.0001 47.2 5.3 97 424-541 500-597 (623)
96 cd01227 PH_Dbs Dbs (DBL's big 74.1 3.8 8.2E-05 39.8 3.8 39 496-541 79-117 (133)
97 cd01231 PH_Lnk LNK-family Plec 68.2 5.2 0.00011 37.1 3.1 84 436-538 20-107 (107)
98 cd00880 Era_like Era (E. coli 66.5 8.6 0.00019 35.2 4.5 55 4-62 67-121 (163)
99 cd01855 YqeH YqeH. YqeH is an 66.2 7.3 0.00016 39.0 4.2 53 3-61 25-77 (190)
100 cd01890 LepA LepA subfamily. 64.8 8.4 0.00018 37.4 4.2 53 4-60 82-134 (179)
101 cd01876 YihA_EngB The YihA (En 64.6 6.6 0.00014 36.8 3.4 56 4-62 70-127 (170)
102 cd05394 RasGAP_RASA2 RASA2 (or 64.4 3.9 8.6E-05 45.1 2.0 24 422-445 284-312 (313)
103 cd01859 MJ1464 MJ1464. This f 64.4 6.1 0.00013 38.1 3.1 54 3-60 3-56 (156)
104 cd01895 EngA2 EngA2 subfamily. 63.5 12 0.00026 35.4 4.9 62 8-73 80-141 (174)
105 PRK00089 era GTPase Era; Revie 62.6 80 0.0017 33.8 11.6 51 5-59 77-127 (292)
106 TIGR00436 era GTP-binding prot 62.1 93 0.002 33.1 11.9 50 6-60 73-122 (270)
107 cd01879 FeoB Ferrous iron tran 61.5 11 0.00025 35.4 4.3 52 3-60 63-116 (158)
108 TIGR03594 GTPase_EngA ribosome 61.2 44 0.00095 37.8 9.7 48 7-58 249-296 (429)
109 PF00009 GTP_EFTU: Elongation 61.0 18 0.00039 36.0 5.9 50 6-59 87-136 (188)
110 KOG1264 Phospholipase C [Lipid 59.2 8.3 0.00018 47.0 3.4 60 463-541 853-912 (1267)
111 cd01849 YlqF_related_GTPase Yl 58.9 8.1 0.00018 37.4 2.9 42 16-60 2-44 (155)
112 KOG3727 Mitogen inducible gene 57.8 6.9 0.00015 45.8 2.4 82 436-540 378-459 (664)
113 KOG4236 Serine/threonine prote 57.2 3.2 6.9E-05 48.5 -0.3 99 422-541 414-525 (888)
114 cd05134 RasGAP_RASA3 RASA3 (or 55.3 7.3 0.00016 43.0 2.1 24 422-445 281-309 (310)
115 cd01891 TypA_BipA TypA (tyrosi 55.2 42 0.0009 33.5 7.4 65 4-72 80-145 (194)
116 cd04165 GTPBP1_like GTPBP1-lik 53.8 28 0.00061 36.3 6.1 46 12-61 109-154 (224)
117 cd01255 PH_TIAM TIAM Pleckstri 51.8 20 0.00044 35.3 4.2 65 463-541 92-156 (160)
118 KOG3523 Putative guanine nucle 51.8 11 0.00024 44.6 2.8 40 495-537 553-592 (695)
119 PF15408 PH_7: Pleckstrin homo 51.4 9.9 0.00021 34.3 1.8 92 424-535 1-93 (104)
120 cd01856 YlqF YlqF. Proteins o 51.1 14 0.00031 36.3 3.2 51 4-60 11-61 (171)
121 cd01894 EngA1 EngA1 subfamily. 50.9 29 0.00064 32.3 5.2 51 7-61 71-121 (157)
122 COG4917 EutP Ethanolamine util 50.6 11 0.00024 36.6 2.2 38 16-59 67-104 (148)
123 cd04163 Era Era subfamily. Er 50.2 34 0.00073 31.8 5.5 51 5-59 75-125 (168)
124 PF15405 PH_5: Pleckstrin homo 49.6 19 0.00041 35.0 3.7 108 422-537 2-133 (135)
125 KOG3531 Rho guanine nucleotide 49.3 13 0.00028 45.5 2.9 102 412-541 741-846 (1036)
126 COG0486 ThdF Predicted GTPase 49.0 1.4E+02 0.003 34.8 11.0 49 9-62 293-341 (454)
127 cd05131 RasGAP_IQGAP2 IQGAP2 i 48.6 2.2E+02 0.0049 31.9 12.4 92 250-351 184-277 (339)
128 KOG3551 Syntrophins (type beta 48.3 16 0.00035 41.2 3.3 98 422-535 293-397 (506)
129 PF15011 CK2S: Casein Kinase 2 48.1 1.4E+02 0.0031 30.1 9.8 72 264-335 9-85 (168)
130 PRK13796 GTPase YqeH; Provisio 48.1 22 0.00048 40.0 4.5 51 6-61 62-112 (365)
131 cd01887 IF2_eIF5B IF2/eIF5B (i 47.1 48 0.001 31.5 6.1 54 4-61 65-118 (168)
132 KOG0446 Vacuolar sorting prote 47.1 28 0.00062 42.3 5.4 172 3-204 303-477 (657)
133 cd01886 EF-G Elongation factor 46.3 87 0.0019 33.7 8.5 51 6-60 81-131 (270)
134 cd01882 BMS1 Bms1. Bms1 is an 46.3 42 0.00091 34.9 5.9 48 10-60 101-148 (225)
135 cd04167 Snu114p Snu114p subfam 44.8 42 0.0009 34.3 5.6 51 4-58 86-136 (213)
136 PF08429 PLU-1: PLU-1-like pro 44.3 4.7E+02 0.01 28.7 14.2 61 234-294 179-242 (335)
137 PRK00454 engB GTP-binding prot 43.8 26 0.00057 34.5 3.9 56 4-62 95-152 (196)
138 COG0218 Predicted GTPase [Gene 43.2 77 0.0017 33.0 7.1 58 3-63 94-153 (200)
139 cd01885 EF2 EF2 (for archaea a 43.1 65 0.0014 33.7 6.8 51 4-58 88-138 (222)
140 PRK00093 GTP-binding protein D 43.0 1E+02 0.0023 35.0 9.0 49 8-60 251-299 (435)
141 cd01857 HSR1_MMR1 HSR1/MMR1. 42.9 21 0.00045 34.0 2.8 62 6-73 5-68 (141)
142 TIGR03596 GTPase_YlqF ribosome 41.8 25 0.00054 37.8 3.5 60 5-72 14-73 (276)
143 COG0699 Predicted GTPases (dyn 41.6 1.7E+02 0.0038 33.7 10.7 76 577-660 462-542 (546)
144 PRK09518 bifunctional cytidyla 41.1 1.1E+02 0.0023 37.8 9.1 50 7-60 527-576 (712)
145 cd04168 TetM_like Tet(M)-like 40.4 77 0.0017 33.3 6.9 71 5-79 80-152 (237)
146 cd01858 NGP_1 NGP-1. Autoanti 40.2 37 0.00081 32.8 4.2 53 16-73 11-65 (157)
147 cd00881 GTP_translation_factor 40.2 96 0.0021 29.9 7.1 52 4-59 77-128 (189)
148 cd04171 SelB SelB subfamily. 39.6 62 0.0013 30.4 5.5 51 6-60 68-119 (164)
149 cd04164 trmE TrmE (MnmE, ThdF, 39.5 49 0.0011 30.7 4.8 49 6-60 74-122 (157)
150 PRK15494 era GTPase Era; Provi 39.4 2.4E+02 0.0052 31.4 10.9 49 8-60 127-175 (339)
151 PRK12289 GTPase RsgA; Reviewed 38.9 41 0.0009 37.8 4.8 62 5-73 82-146 (352)
152 cd04178 Nucleostemin_like Nucl 38.5 35 0.00075 34.2 3.8 52 16-73 2-56 (172)
153 cd04145 M_R_Ras_like M-Ras/R-R 36.9 94 0.002 29.3 6.4 54 3-60 64-122 (164)
154 cd04112 Rab26 Rab26 subfamily. 36.4 84 0.0018 31.2 6.2 55 4-59 65-120 (191)
155 cd04169 RF3 RF3 subfamily. Pe 36.1 1.9E+02 0.0041 31.0 9.2 67 5-75 87-154 (267)
156 cd04119 RJL RJL (RabJ-Like) su 36.1 91 0.002 29.3 6.1 52 4-59 64-124 (168)
157 KOG3520 Predicted guanine nucl 35.9 21 0.00046 45.4 2.0 58 462-541 666-723 (1167)
158 PF02421 FeoB_N: Ferrous iron 35.5 14 0.00031 36.7 0.4 53 2-60 66-120 (156)
159 KOG0592 3-phosphoinositide-dep 35.3 53 0.0012 38.9 5.0 84 422-538 452-536 (604)
160 cd00882 Ras_like_GTPase Ras-li 35.0 61 0.0013 28.9 4.5 53 7-62 63-119 (157)
161 PRK09563 rbgA GTPase YlqF; Rev 34.9 58 0.0013 35.2 5.0 61 5-73 17-77 (287)
162 KOG0517 Beta-spectrin [Cytoske 34.5 8.3 0.00018 50.6 -1.7 94 422-539 2300-2409(2473)
163 PRK03003 GTP-binding protein D 34.1 1.5E+02 0.0032 34.5 8.5 49 8-60 289-337 (472)
164 cd04157 Arl6 Arl6 subfamily. 34.1 92 0.002 29.3 5.8 53 4-60 60-119 (162)
165 cd05133 RasGAP_IQGAP1 IQGAP1 i 33.9 6.1E+02 0.013 28.8 13.0 92 250-351 184-277 (360)
166 cd04170 EF-G_bact Elongation f 33.0 2.2E+02 0.0049 30.1 9.1 53 5-61 80-132 (268)
167 cd04138 H_N_K_Ras_like H-Ras/N 32.5 82 0.0018 29.4 5.1 57 3-60 63-121 (162)
168 COG1162 Predicted GTPases [Gen 32.3 1.2E+02 0.0026 33.5 6.8 107 11-142 78-185 (301)
169 cd01868 Rab11_like Rab11-like. 32.0 1.4E+02 0.0031 28.3 6.7 54 3-60 66-123 (165)
170 cd00154 Rab Rab family. Rab G 31.9 99 0.0022 28.4 5.5 54 4-58 64-118 (159)
171 TIGR03597 GTPase_YqeH ribosome 31.7 52 0.0011 36.9 4.2 53 4-62 55-107 (360)
172 cd01865 Rab3 Rab3 subfamily. 31.2 1E+02 0.0023 29.5 5.7 54 4-61 65-122 (165)
173 cd04104 p47_IIGP_like p47 (47- 31.0 4E+02 0.0086 26.8 10.1 22 35-59 100-121 (197)
174 PRK09866 hypothetical protein; 30.6 95 0.0021 38.0 6.1 55 6-62 252-306 (741)
175 KOG2070 Guanine nucleotide exc 30.2 34 0.00074 39.8 2.3 77 437-537 325-404 (661)
176 cd01893 Miro1 Miro1 subfamily. 30.1 87 0.0019 30.1 4.9 53 4-61 62-119 (166)
177 cd04101 RabL4 RabL4 (Rab-like4 29.8 1.1E+02 0.0023 29.0 5.5 53 3-60 66-122 (164)
178 COG1160 Predicted GTPases [Gen 29.6 2.2E+02 0.0049 33.1 8.7 75 10-92 258-332 (444)
179 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 29.5 80 0.0017 30.1 4.6 55 4-60 66-122 (166)
180 TIGR03594 GTPase_EngA ribosome 29.1 66 0.0014 36.4 4.5 55 4-62 70-124 (429)
181 PRK01889 GTPase RsgA; Reviewed 29.1 71 0.0015 35.8 4.7 39 17-60 116-157 (356)
182 cd04151 Arl1 Arl1 subfamily. 28.7 90 0.0019 29.6 4.7 54 3-60 57-115 (158)
183 TIGR01394 TypA_BipA GTP-bindin 28.6 1.4E+02 0.0031 35.9 7.3 64 5-72 80-144 (594)
184 cd01884 EF_Tu EF-Tu subfamily. 28.0 62 0.0013 33.0 3.6 46 10-59 86-132 (195)
185 cd01862 Rab7 Rab7 subfamily. 27.9 1.5E+02 0.0033 28.1 6.2 56 3-59 63-123 (172)
186 cd01878 HflX HflX subfamily. 27.9 1.4E+02 0.003 29.9 6.1 47 10-60 118-168 (204)
187 TIGR01425 SRP54_euk signal rec 27.7 75 0.0016 36.8 4.5 48 12-65 212-259 (429)
188 PRK10218 GTP-binding protein; 27.7 1.5E+02 0.0032 36.0 7.1 65 4-72 83-148 (607)
189 PRK09343 prefoldin subunit bet 27.6 2.2E+02 0.0048 27.1 7.0 56 148-211 64-119 (121)
190 cd04155 Arl3 Arl3 subfamily. 27.5 99 0.0021 29.6 4.8 56 4-60 73-130 (173)
191 KOG3549 Syntrophins (type gamm 26.8 54 0.0012 36.7 3.0 97 422-541 282-388 (505)
192 KOG2484 GTPase [General functi 26.7 79 0.0017 36.2 4.4 72 8-92 142-215 (435)
193 CHL00189 infB translation init 26.6 73 0.0016 39.4 4.4 53 4-60 310-362 (742)
194 cd04161 Arl2l1_Arl13_like Arl2 26.2 3.2E+02 0.0068 26.4 8.1 57 3-61 57-116 (167)
195 cd04176 Rap2 Rap2 subgroup. T 26.0 94 0.002 29.5 4.3 52 4-59 64-120 (163)
196 cd04166 CysN_ATPS CysN_ATPS su 26.0 1.9E+02 0.0041 29.4 6.8 51 7-60 95-145 (208)
197 cd04123 Rab21 Rab21 subfamily. 25.9 1.3E+02 0.0029 27.9 5.4 53 4-60 64-120 (162)
198 PF09691 PulS_OutS: Bacterial 25.8 2.3E+02 0.005 26.8 6.6 78 574-651 20-102 (109)
199 PRK00741 prfC peptide chain re 25.4 2.8E+02 0.006 33.0 8.8 65 5-73 95-160 (526)
200 cd04113 Rab4 Rab4 subfamily. 25.1 1.5E+02 0.0034 27.9 5.6 54 4-60 64-120 (161)
201 PRK11058 GTPase HflX; Provisio 24.6 1.1E+02 0.0024 35.3 5.2 48 9-60 273-324 (426)
202 PRK15467 ethanolamine utilizat 24.4 1.8E+02 0.0038 28.3 6.0 47 8-60 60-106 (158)
203 cd00878 Arf_Arl Arf (ADP-ribos 24.1 1.2E+02 0.0025 28.6 4.6 57 3-61 57-116 (158)
204 cd04124 RabL2 RabL2 subfamily. 24.0 1E+02 0.0022 29.5 4.2 55 3-59 63-118 (161)
205 TIGR00475 selB selenocysteine- 23.9 1.3E+02 0.0029 36.0 5.9 51 7-61 68-119 (581)
206 cd04127 Rab27A Rab27a subfamil 23.9 6.4E+02 0.014 24.1 9.9 52 4-59 78-134 (180)
207 cd01864 Rab19 Rab19 subfamily. 23.8 2E+02 0.0042 27.4 6.1 56 4-60 67-123 (165)
208 cd04152 Arl4_Arl7 Arl4/Arl7 su 23.4 1.3E+02 0.0028 29.7 4.9 52 4-59 67-123 (183)
209 cd04162 Arl9_Arfrp2_like Arl9/ 23.3 1.6E+02 0.0035 28.4 5.5 53 4-60 59-114 (164)
210 cd04159 Arl10_like Arl10-like 23.2 1.8E+02 0.0039 26.7 5.6 54 4-61 59-117 (159)
211 KOG2423 Nucleolar GTPase [Gene 23.1 66 0.0014 36.9 2.9 67 16-92 216-285 (572)
212 smart00175 RAB Rab subfamily o 22.9 1.7E+02 0.0037 27.4 5.4 52 4-59 64-119 (164)
213 PF13256 DUF4047: Domain of un 22.8 3.5E+02 0.0076 26.1 7.1 64 599-663 25-91 (125)
214 PF05823 Gp-FAR-1: Nematode fa 22.6 2.9E+02 0.0063 27.4 7.1 59 144-209 44-102 (154)
215 PRK09554 feoB ferrous iron tra 22.5 75 0.0016 39.5 3.6 53 2-60 73-127 (772)
216 smart00178 SAR Sar1p-like memb 22.3 1.3E+02 0.0029 29.7 4.8 55 3-59 75-132 (184)
217 PRK00093 GTP-binding protein D 22.2 1.5E+02 0.0032 33.7 5.7 51 5-59 73-123 (435)
218 TIGR03156 GTP_HflX GTP-binding 22.0 1.4E+02 0.0031 33.4 5.3 48 9-60 265-316 (351)
219 cd04141 Rit_Rin_Ric Rit/Rin/Ri 22.0 1.7E+02 0.0036 28.7 5.3 53 3-59 64-121 (172)
220 cd04154 Arl2 Arl2 subfamily. 21.6 1.8E+02 0.0039 28.1 5.5 56 3-60 72-130 (173)
221 cd01863 Rab18 Rab18 subfamily. 21.6 1.5E+02 0.0033 27.8 4.8 52 4-59 64-120 (161)
222 cd04160 Arfrp1 Arfrp1 subfamil 21.3 1.4E+02 0.003 28.4 4.4 55 4-60 65-122 (167)
223 PF10035 DUF2179: Uncharacteri 21.2 1E+02 0.0023 24.7 3.0 31 9-44 12-42 (55)
224 cd01889 SelB_euk SelB subfamil 20.8 1.8E+02 0.0038 28.9 5.3 53 4-60 80-135 (192)
225 cd04136 Rap_like Rap-like subf 20.6 1.9E+02 0.0041 27.2 5.2 55 4-59 64-120 (163)
226 cd04139 RalA_RalB RalA/RalB su 20.4 2.9E+02 0.0062 25.8 6.4 54 4-59 63-119 (164)
227 cd01888 eIF2_gamma eIF2-gamma 20.4 1.9E+02 0.0041 29.3 5.4 49 10-60 104-152 (203)
228 COG1161 Predicted GTPases [Gen 20.4 1.2E+02 0.0026 33.6 4.3 65 4-76 26-90 (322)
229 cd04118 Rab24 Rab24 subfamily. 20.1 1.5E+02 0.0033 29.1 4.6 53 3-60 64-120 (193)
230 cd04125 RabA_like RabA-like su 20.1 2E+02 0.0043 28.3 5.5 52 4-59 64-119 (188)
231 cd01883 EF1_alpha Eukaryotic e 20.0 2.9E+02 0.0064 28.3 6.8 49 8-59 96-151 (219)
No 1
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=100.00 E-value=2.2e-74 Score=668.34 Aligned_cols=481 Identities=28% Similarity=0.410 Sum_probs=395.2
Q ss_pred cHHHHHHhcCCCCeEEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCCcchhHHHHHHHHHcCCC-CCCC
Q 004370 2 DDAMISKYVERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAEGDSKALAAVRALLLNQG-PPKT 80 (758)
Q Consensus 2 ~~~mV~~YI~~~ntIILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd~gt~~~~~~~~iL~nk~-pl~~ 80 (758)
.++||+.||++|+||||||+|||+ |++||+||++||+|||+|.||||||||+|+||+||++. .+|.|+. |++
T Consensus 158 I~~mi~~yi~~~~~iILav~~an~--d~ats~alkiarevDp~g~RTigvitK~DlmdkGt~~~----~~L~g~~~~l~- 230 (657)
T KOG0446|consen 158 IKSMIEEYIEKPNRIILAVTPANS--DIATSPALVVAREVDPGGSRTLEVITKFDFMDKGTNAV----TRLVGRPITLK- 230 (657)
T ss_pred HHHHHHHhccccchhhhhccchhh--hhhcCHHHHHHHhhCCCccchhHHhhhHHhhhcCCcce----eeecCCccccc-
Confidence 468999999999999999999996 99999999999999999999999999999999999974 4799998 888
Q ss_pred CCCCEEEEEcCCcccccccccCcccCCCHHHHHHHHHHHHhhcC-CCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004370 81 SDIPWVAVIGQSVAISSVTSSGAAADSSLEAAWRAEVETLKRLL-SGAPQNKLGRVALVDTIAGQIRNRMSLRVPKLLSG 159 (758)
Q Consensus 81 ~~lGy~~V~nRs~~~~~~Q~d~i~~~~s~~~a~~~E~~FF~s~~-~~~~~~r~G~~~L~~~Ls~~L~~hI~~~LP~l~~~ 159 (758)
+||++|+||+ |+| |+.++++.+|+.+|+.||.+|| |++...++|+++|+++|+.+|..||+++||.|+..
T Consensus 231 --~g~v~vvnR~------q~d-i~~~k~~~~al~~e~~~f~~~p~y~~~~~~~g~p~La~~L~~~l~~hi~~~lP~l~~~ 301 (657)
T KOG0446|consen 231 --VGYVGVVNRS------QSI-IDFKKSILEALNDEVPSFESVPSYPILLTISGVPYLALLLPGYLQSHIRDQLPELKTK 301 (657)
T ss_pred --cceeeeeccc------hhh-hhhhhhHHHHHHhhhhhhhccccccccccccCcchHHHHHHHHHHHHHHhcCcHHHHH
Confidence 8999999999 777 9999999999999999999999 78778889999999999999999999999999999
Q ss_pred HHHhHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHHHHHhhcCCC--------CCcchHHHHHhcchhhhhccCCC
Q 004370 160 LQGKSQIVQDELLKLGDQILENTEGTKALALQLCREFEDKFLQHITGGE--------GNGWKVVASFEGNFPNRMKQLPL 231 (758)
Q Consensus 160 I~~~l~~~e~eL~~LG~~~~~~~e~~~~~ll~li~~F~~~f~~~I~G~~--------~gGarI~~if~e~F~~~i~~lp~ 231 (758)
|+.++.+.++||.+||. +++.......++.++++|+..|...+.|.. +||+||+++||+.|+..+.++++
T Consensus 302 i~~~~~~~~~el~~~g~--~~~~~~~~~~ll~~i~~~~~~~~~~v~g~~~~~~~~elsggari~~~F~~~f~~~i~~i~~ 379 (657)
T KOG0446|consen 302 INKLLEKYQDELNRIGA--VDVDLANSAALLAIIREDPRGLRTGVIGKLDLVPTKALSGGARINYPFHGGFPGVIKKLPP 379 (657)
T ss_pred HHHHHHHHHHHHHHhcc--cCCccchhhHHHHHHHHHHHHHHHhhcccccccchhcccchhhhhhhhhhccchhhhcCCc
Confidence 99999999999999997 222222344578899999999999888862 58999999999999999999999
Q ss_pred CcccChhhHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcchHHHH
Q 004370 232 DRHFDMKNVKRVVLEADGYQPYLISPEKGLRSLIKSVLEMAKEPSRLCVDEVHRVLVDIVSAAANATPGLGRYPPFKREV 311 (758)
Q Consensus 232 ~~~~~~~~Vr~~I~~~~G~~~~lf~P~~afe~Lik~qi~~~~~Pa~~cvd~V~~~L~~iv~~~~~~t~~l~rfP~L~~~i 311 (758)
++.+...+|++++.+++|+++++|.|+.+||.+|+.||+.+++|+++||+.||++|.+++.+|...+ .|.|||.|+.++
T Consensus 380 ~~~~~~~~i~~~i~~~~G~~~~lf~p~~afe~lvk~~i~~l~~p~l~~v~~v~~el~~~~~~~~~~~-~l~rfp~l~~~~ 458 (657)
T KOG0446|consen 380 DRKLLGQNIEKLVSEASGIRPSLFVPESSFESLVKGQIQSLRDPSLKCVEEVHRELVRIVADSIRAT-ELKRFPVLYSEL 458 (657)
T ss_pred chhhhHHHHHHHHHhccCCCccccCChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhH-HHHHhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999997633 899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchh--hHHHHH-HHHhhHHHHHhhhhhhhhhHHHhhhhccCCCCCCCCC
Q 004370 312 VEIASAALDRFKSDAKKMVVALVDMERVFVPPQH--FIRLVQ-RRQRREEEQKYRSSKKAADAEQSILNRATSPQTGGPE 388 (758)
Q Consensus 312 ~~iv~~~L~~~~~~a~~~v~~Lid~E~~yi~tnh--F~~~~q-~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~ 388 (758)
.+++.++++++.++++++|..+|+||.+||||+| |+.... +.+. ..++.
T Consensus 459 ~~~~~~~~~~~~~~t~~~v~~~i~~e~~yinT~h~df~~~~~~al~~-----------------------~~~~~----- 510 (657)
T KOG0446|consen 459 VEIASSLIAEGLDETKKAVKNLIDLEQSYLNTDHPDFRSLTDSALSS-----------------------VTSPS----- 510 (657)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcCcChhhhhhHHHHHHH-----------------------hhccc-----
Confidence 9999999999999999999999999999999999 887652 2100 00000
Q ss_pred CCCCcccccCCCCCCccccccCCCcccCCCCCccccchhhcccCCCCCcccceeeeecCCcccccccchhhhhccceeec
Q 004370 389 SGGSLKSMKDKSSPQDKDVQEGSTLKTAGPGGEITAGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQEERHFRGVVTL 468 (758)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~GwL~K~g~~~~~WkkRWFVL~~~sg~L~YyK~~~ek~~kG~I~L 468 (758)
. .+ ..||. +. ..
T Consensus 511 ---------------------------------~------------------------~~--~~~~~-~~--------~~ 522 (657)
T KOG0446|consen 511 ---------------------------------I------------------------AA--MKLIS-AQ--------LL 522 (657)
T ss_pred ---------------------------------c------------------------cc--ccccc-cc--------cc
Confidence 0 00 11111 00 00
Q ss_pred CccccccccccccccCchhhhhcccCCCceEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHhhcCCcccc
Q 004370 469 EECYIEEVVEDEDAKSSKDKKKQAEKGPSLIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQARGGDVRR 548 (758)
Q Consensus 469 ~~~~v~~~~~~~~~~s~k~~~~np~~~~~~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~~~~~~~~~ 548 (758)
..+... ...+++.++.-... + -..+.
T Consensus 523 ~~~~~~---------------------------------~~~~~~~~~~~~~~-------------~--~~~~~------ 548 (657)
T KOG0446|consen 523 KEELGE---------------------------------CNSALKAIKNAVGS-------------I--RLDPS------ 548 (657)
T ss_pred cccccc---------------------------------ccchhhhhcchhhh-------------h--hhccc------
Confidence 000000 00011111100000 0 00000
Q ss_pred CCCCCCccCCCCCCCCcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhhhhhccH
Q 004370 549 DSIHPMRQSHSDGSLDTMARKPADPEEELRWMAQEVRGYVEAVLNSLNANVPKAVVLCQVEKAKEDMLNQLYSSISAQST 628 (758)
Q Consensus 549 ~~~~~~~~~~~~~slDpq~~~~~~~~~~~~~i~~~V~sY~~iV~k~i~d~VPKai~h~~V~~~k~~Ll~~LY~~~~~~~~ 628 (758)
.+ .-..++++..+ .+.++++|++++.+|++||+++|+|+|||+|||||||.+|+.|+..||..+.. ..
T Consensus 549 ---~~-----~~~~~~~~~~~---~~~~~~~i~~~~~sY~~iv~~~i~d~vpk~i~~~lv~~~k~~l~~~l~~~L~~-~~ 616 (657)
T KOG0446|consen 549 ---DI-----VLSRALVLKKR---ECKETEEISSCPESYLNIVSDKLVDTVPKALNHELLNEFKDDLPNELDQRLYA-GD 616 (657)
T ss_pred ---ch-----hhhhhhhcchh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ch
Confidence 00 00011111222 35679999999999999999999999999999999999999888887777766 36
Q ss_pred HHHHHhhhcCHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004370 629 ERIGELLQEDKNAKSRRELCQKQSTLLSKLIRQLG 663 (758)
Q Consensus 629 ~~~~~Ll~E~~~~~~rR~~~~~~~~~l~~~~~~l~ 663 (758)
++++.||+|+|.+++||+.|++|+++|++|.+.++
T Consensus 617 ~~~~~ll~E~~~i~~~R~~~~~~l~~L~~a~~ii~ 651 (657)
T KOG0446|consen 617 EQLESLLKEDPRIKRRRELQQKRLLALQKALSILA 651 (657)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999877664
No 2
>PF01031 Dynamin_M: Dynamin central region; InterPro: IPR000375 Dynamin is a microtubule-associated force-producing protein of 100 Kd which is involved in the production of microtubule bundles. At the N terminus of dynamin is a GTPase domain (see IPR001401 from INTERPRO), and at the C terminus is a PH domain (see IPR001849 from INTERPRO). Between these two domains lies a central region of unknown function, which this entry represents.; GO: 0005525 GTP binding; PDB: 3ZVR_A 2AKA_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D 1JWY_B 1JX2_B 3SZR_A ....
Probab=100.00 E-value=5.1e-53 Score=451.78 Aligned_cols=272 Identities=26% Similarity=0.392 Sum_probs=241.5
Q ss_pred HHHHcCCC-CCCCCCCCEEEEEcCCcccccccccCcccCCCHHHHHHHHHHHHhhcC-CCCCCCCcchHHHHHHHHHHHH
Q 004370 69 RALLLNQG-PPKTSDIPWVAVIGQSVAISSVTSSGAAADSSLEAAWRAEVETLKRLL-SGAPQNKLGRVALVDTIAGQIR 146 (758)
Q Consensus 69 ~~iL~nk~-pl~~~~lGy~~V~nRs~~~~~~Q~d~i~~~~s~~~a~~~E~~FF~s~~-~~~~~~r~G~~~L~~~Ls~~L~ 146 (758)
++||.|+. ||+ ||||||+||| |+| |+.+.|+++|++.|++||++|| |+.++++|||++|+.+|+++|.
T Consensus 2 ~~iL~n~~~pLk---lGy~~V~nrs------q~d-i~~~~s~~~a~~~E~~fF~~~~~~~~~~~~~G~~~L~~~L~~~L~ 71 (295)
T PF01031_consen 2 MDILRNKVIPLK---LGYVGVKNRS------QQD-INDGKSIEEARQKEKEFFSNHPWYSSPADRCGTPALRKRLSELLV 71 (295)
T ss_dssp HHHHTTSSS--T---T-EEEE--S-------HHH-HHTTEEHHHHHHHHHHHHHHSTTTGGGGGGSSHHHHHHHHHHHHH
T ss_pred hHHhCCCeeccC---CCeEEEecCC------ccc-cccCCCHHHHHHHHHHHHhcccccCCcccccchHHHHHHHHHHHH
Confidence 57999999 999 8999999999 777 9999999999999999999998 7678899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHHHHHhhcCCCC---------CcchHHHH
Q 004370 147 NRMSLRVPKLLSGLQGKSQIVQDELLKLGDQILENTEGTKALALQLCREFEDKFLQHITGGEG---------NGWKVVAS 217 (758)
Q Consensus 147 ~hI~~~LP~l~~~I~~~l~~~e~eL~~LG~~~~~~~e~~~~~ll~li~~F~~~f~~~I~G~~~---------gGarI~~i 217 (758)
+||+++||.|+.+|+.+|.+++.||..||++++++.+.++.+|++++.+|++.|.++|+|.+. +|+||+++
T Consensus 72 ~~I~~~LP~l~~~I~~~l~~~~~eL~~lG~~~~~~~~~~~~~l~~~~~~f~~~~~~~i~G~~~~~~~~~~l~~~ari~~~ 151 (295)
T PF01031_consen 72 EHIRKSLPSLKSEIQKKLQEAEKELKRLGPPRPETPEEQRAYLLQIISKFSRIFKDAIDGEYSDEFSTNELRGGARIRYI 151 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHCSSSCHHHHHHHHHHHHHHHHHHHHHHHTT-------TTS--HHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccchhhHHHHH
Confidence 999999999999999999999999999999999677888999999999999999999999985 68999999
Q ss_pred HhcchhhhhccCCCCcccChhhHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhc
Q 004370 218 FEGNFPNRMKQLPLDRHFDMKNVKRVVLEADGYQPYLISPEKGLRSLIKSVLEMAKEPSRLCVDEVHRVLVDIVSAAANA 297 (758)
Q Consensus 218 f~e~F~~~i~~lp~~~~~~~~~Vr~~I~~~~G~~~~lf~P~~afe~Lik~qi~~~~~Pa~~cvd~V~~~L~~iv~~~~~~ 297 (758)
|++.|...+..+++.+.++.++|+++|++++|+++|+|+|+.+|+.||+++|++|++||..||+.|+++|.+++.+++.
T Consensus 152 f~~~~~~~~~~~~~~~~~~~~eI~~~i~~~~G~elp~f~p~~afe~Li~~~i~~l~~Pa~~cv~~V~~~l~~i~~~~~~- 230 (295)
T PF01031_consen 152 FNEWFDKFLEKIDPFEDLSDEEIRTAIRNSRGRELPGFVPESAFESLIRKQIEKLEEPALQCVEEVHEELQRIVEQVLE- 230 (295)
T ss_dssp HHHHHHHHHHHTSHHHHHHHHHHHHHHHH--S-SSS-SCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHhhhhhhhhhhccccchhHHHHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcc-
Confidence 9999999998887766677899999999999999999999999999999999999999999999999999999999975
Q ss_pred CCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchh--hHHHHHH
Q 004370 298 TPGLGRYPPFKREVVEIASAALDRFKSDAKKMVVALVDMERVFVPPQH--FIRLVQR 352 (758)
Q Consensus 298 t~~l~rfP~L~~~i~~iv~~~L~~~~~~a~~~v~~Lid~E~~yi~tnh--F~~~~q~ 352 (758)
.+|.+||.|++++.+++.++|+++..+|+++|..||+||++||||+| |.+..++
T Consensus 231 -~~~~~fp~L~~~i~~~v~~~l~~~~~~a~~~i~~li~~E~~~i~T~~~~f~~~~~~ 286 (295)
T PF01031_consen 231 -KEFERFPNLKEAIKEAVQQLLEECREPAKEMIENLIDMELSYINTQHPDFLGELQA 286 (295)
T ss_dssp -HHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--TTSTT--TTS--
T ss_pred -hhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999 8876554
No 3
>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain. Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.92 E-value=4.8e-26 Score=201.76 Aligned_cols=105 Identities=22% Similarity=0.310 Sum_probs=98.1
Q ss_pred cccchhhcc--cCCCCCcccceeeeecCCcccccccchhhhhccceeecCccccccccccccccCchhhhhcccCCCceE
Q 004370 422 ITAGFLLKK--SSKTNGWSKRWFVLNEKTGKLGYTKKQEERHFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPSLI 499 (758)
Q Consensus 422 i~~GwL~K~--g~~~~~WkkRWFVL~~~sg~L~YyK~~~ek~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~~~ 499 (758)
|++|||... |.++++-|+|||||+.++ |+|||+.+|++++|+|||+++++++++++++ + ++|+
T Consensus 2 irkgwl~~~n~~~m~ggsK~~WFVLt~~~--L~wykd~eeKE~kyilpLdnLk~Rdve~gf~--s-----------k~~~ 66 (110)
T cd01256 2 IRKGWLSISNVGIMKGGSKDYWFVLTSES--LSWYKDDEEKEKKYMLPLDGLKLRDIEGGFM--S-----------RNHK 66 (110)
T ss_pred eeeeeEEeeccceecCCCcceEEEEecce--eeeecccccccccceeeccccEEEeeccccc--C-----------CCcE
Confidence 899999988 667889999999999986 9999999999999999999999999998874 2 5799
Q ss_pred EEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhh-HHHHhhc
Q 004370 500 FKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKL-RVVIQAR 542 (758)
Q Consensus 500 F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~ai-Ra~i~~~ 542 (758)
|.+.+++ .+||||+|++++|+|+|++|+++|+++| ||+|+|+
T Consensus 67 FeLfnpd-~rnvykd~k~lel~~~~~e~vdswkasflragvype 109 (110)
T cd01256 67 FALFYPD-GRNVYKDYKQLELGCETLEEVDSWKASFLRAGVYPE 109 (110)
T ss_pred EEEEcCc-ccccccchheeeecCCCHHHHHHHHHHHHhccccCC
Confidence 9999998 8999999999999999999999999998 9999984
No 4
>smart00302 GED Dynamin GTPase effector domain.
Probab=99.83 E-value=2.4e-20 Score=167.45 Aligned_cols=87 Identities=30% Similarity=0.437 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhhhhhccHHHHHHhhhcCHHHHHHHHHHHHHHHH
Q 004370 575 EELRWMAQEVRGYVEAVLNSLNANVPKAVVLCQVEKAKEDMLNQLYSSISAQSTERIGELLQEDKNAKSRRELCQKQSTL 654 (758)
Q Consensus 575 ~~~~~i~~~V~sY~~iV~k~i~d~VPKai~h~~V~~~k~~Ll~~LY~~~~~~~~~~~~~Ll~E~~~~~~rR~~~~~~~~~ 654 (758)
.++++|+++|.|||+||+++|+|+|||+|||||||++++.|..+||+.+.+. +.+++||+|||++++||++|.+++++
T Consensus 4 ~~~~~i~~lv~sYf~iv~k~i~D~VPKaI~~~lv~~~~~~lq~~L~~~L~~~--~~~~~LL~E~~~i~~kR~~~~~~l~~ 81 (92)
T smart00302 4 SELEEIKSLVKSYFTIVSKTLADQVPKAIMYLLVNESKDSLQNELLALLYKE--ELLDELLEEDPEIASKRKELKKRLEL 81 (92)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCc--ccHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 5799999999999999999999999999999999999998888888877543 47999999999999999999999999
Q ss_pred HHHHHHHhc
Q 004370 655 LSKLIRQLG 663 (758)
Q Consensus 655 l~~~~~~l~ 663 (758)
|++|.+.|+
T Consensus 82 L~~A~~~l~ 90 (92)
T smart00302 82 LKKARQIIA 90 (92)
T ss_pred HHHHHHHHh
Confidence 999999885
No 5
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.74 E-value=2e-18 Score=180.24 Aligned_cols=87 Identities=28% Similarity=0.561 Sum_probs=80.8
Q ss_pred HHHHHHhcCCCCeEEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCCcchhHHHHHHHHHcCCC-CCCCC
Q 004370 3 DAMISKYVERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAEGDSKALAAVRALLLNQG-PPKTS 81 (758)
Q Consensus 3 ~~mV~~YI~~~ntIILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd~gt~~~~~~~~iL~nk~-pl~~~ 81 (758)
++|+..||+++++|||+|++|+. |+++++++++|+++||.|.|||||+||+|.+++|++ |.++|.|+. +|+
T Consensus 152 ~~lv~~yi~~~~~IIL~Vvda~~--d~~~~d~l~ia~~ld~~~~rti~ViTK~D~~~~~~~----~~~~~~~~~~~l~-- 223 (240)
T smart00053 152 KDMIKQFISKEECLILAVTPANV--DLANSDALKLAKEVDPQGERTIGVITKLDLMDEGTD----ARDILENKLLPLR-- 223 (240)
T ss_pred HHHHHHHHhCccCeEEEEEECCC--CCCchhHHHHHHHHHHcCCcEEEEEECCCCCCccHH----HHHHHhCCccccC--
Confidence 57999999999999999999997 999999999999999999999999999999999987 678999998 888
Q ss_pred CCCEEEEEcCCcccccccccCccc
Q 004370 82 DIPWVAVIGQSVAISSVTSSGAAA 105 (758)
Q Consensus 82 ~lGy~~V~nRs~~~~~~Q~d~i~~ 105 (758)
||||+|+||+ |+| |+.
T Consensus 224 -~g~~~v~nr~------~~d-~~~ 239 (240)
T smart00053 224 -RGYIGVVNRS------QKD-IEG 239 (240)
T ss_pred -CCEEEEECCC------hHH-hhc
Confidence 8999999999 666 653
No 6
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=99.74 E-value=1e-18 Score=159.90 Aligned_cols=96 Identities=24% Similarity=0.449 Sum_probs=77.2
Q ss_pred ccchhhcccCC-CCCcccceeeeecCCcccccccchhhhhccceeecCcc----ccccccccccccCchhhhhcccCCCc
Q 004370 423 TAGFLLKKSSK-TNGWSKRWFVLNEKTGKLGYTKKQEERHFRGVVTLEEC----YIEEVVEDEDAKSSKDKKKQAEKGPS 497 (758)
Q Consensus 423 ~~GwL~K~g~~-~~~WkkRWFVL~~~sg~L~YyK~~~ek~~kG~I~L~~~----~v~~~~~~~~~~s~k~~~~np~~~~~ 497 (758)
++|||.|+|+. .++||+|||||++. .|+||+++.+..++|.|+|..+ .|....... .+....
T Consensus 1 KeG~L~K~g~~~~k~wkkRwFvL~~~--~L~Yyk~~~d~~~~G~I~L~~~~~~~~v~~~~~~~-----------~~~~~~ 67 (103)
T cd01251 1 KEGFMEKTGPKHTEGFKKRWFTLDDR--RLMYFKDPLDAFAKGEVFLGSQEDGYEVREGLPPG-----------TQGNHW 67 (103)
T ss_pred CceeEEecCCCCCCCceeEEEEEeCC--EEEEECCCCCcCcCcEEEeeccccceeEeccCCcc-----------cccccc
Confidence 57999999987 58999999999976 5999999999999999999654 343211110 011234
Q ss_pred eEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHh
Q 004370 498 LIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQ 540 (758)
Q Consensus 498 ~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~ 540 (758)
+.|.|.+++ |+|+|+|+|++|+++|+++|+.++.
T Consensus 68 ~~F~i~t~~---------Rty~l~a~s~~e~~~Wi~ai~~v~~ 101 (103)
T cd01251 68 YGVTLVTPE---------RKFLFACETEQDRREWIAAFQNVLS 101 (103)
T ss_pred ceEEEEeCC---------eEEEEECCCHHHHHHHHHHHHHHhc
Confidence 599999985 9999999999999999999998875
No 7
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=99.72 E-value=3.4e-18 Score=155.47 Aligned_cols=96 Identities=21% Similarity=0.375 Sum_probs=82.0
Q ss_pred cccchhhcccCCCCCcccceeeeecCCcccccccchhhhhccceeecCccccccccccccccCchhhhhcccCCCceEEE
Q 004370 422 ITAGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQEERHFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPSLIFK 501 (758)
Q Consensus 422 i~~GwL~K~g~~~~~WkkRWFVL~~~sg~L~YyK~~~ek~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~~~F~ 501 (758)
+++|||.|+|+..+.|++|||||++. .|+|||++.+..+.|.|+|.+|.|...++... ..+++++|.
T Consensus 3 ~k~G~L~Kkg~~~k~WkkRwfvL~~~--~L~yyk~~~~~~~~~~I~L~~~~v~~~~~~~~-----------~~~~~~~F~ 69 (100)
T cd01233 3 SKKGYLNFPEETNSGWTRRFVVVRRP--YLHIYRSDKDPVERGVINLSTARVEHSEDQAA-----------MVKGPNTFA 69 (100)
T ss_pred ceeEEEEeeCCCCCCcEEEEEEEECC--EEEEEccCCCccEeeEEEecccEEEEccchhh-----------hcCCCcEEE
Confidence 78999999999999999999999986 49999999999999999999998765443210 012578999
Q ss_pred EeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHH
Q 004370 502 ITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVI 539 (758)
Q Consensus 502 I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i 539 (758)
|.+++ |+|+|+|+|++|+.+|+.+|+...
T Consensus 70 I~t~~---------rt~~~~A~s~~e~~~Wi~ai~~~~ 98 (100)
T cd01233 70 VCTKH---------RGYLFQALSDKEMIDWLYALNPLY 98 (100)
T ss_pred EECCC---------CEEEEEcCCHHHHHHHHHHhhhhh
Confidence 99885 999999999999999999998754
No 8
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.71 E-value=7.3e-18 Score=152.08 Aligned_cols=89 Identities=28% Similarity=0.384 Sum_probs=75.4
Q ss_pred cchhhcccCC--CCCcccceeeeecCCcccccccchhhhhccceeecCccccccccccccccCchhhhhcccCCCceEEE
Q 004370 424 AGFLLKKSSK--TNGWSKRWFVLNEKTGKLGYTKKQEERHFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPSLIFK 501 (758)
Q Consensus 424 ~GwL~K~g~~--~~~WkkRWFVL~~~sg~L~YyK~~~ek~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~~~F~ 501 (758)
.|||.|.|++ .++||+|||||++..+.|+|||++.+..++|.|+|.++.+...++ ...+.|.
T Consensus 2 ~GyL~K~g~~~~~K~WkkRWFvL~~~~~~L~Yyk~~~d~~p~G~I~L~~~~~~~~~~----------------~~~~~F~ 65 (95)
T cd01265 2 CGYLHKIEGKGPLRGRRSRWFALDDRTCYLYYYKDSQDAKPLGRVDLSGAAFTYDPR----------------EEKGRFE 65 (95)
T ss_pred cccEEEecCCCCCcCceeEEEEEcCCCcEEEEECCCCcccccceEECCccEEEcCCC----------------CCCCEEE
Confidence 5999999864 689999999998655679999999999999999999877643211 1357899
Q ss_pred EeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHH
Q 004370 502 ITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRV 537 (758)
Q Consensus 502 I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa 537 (758)
|.++. |+|+|.|+|++|+++||.+|+.
T Consensus 66 i~t~~---------r~y~l~A~s~~e~~~Wi~al~~ 92 (95)
T cd01265 66 IHSNN---------EVIALKASSDKQMNYWLQALQS 92 (95)
T ss_pred EEcCC---------cEEEEECCCHHHHHHHHHHHHh
Confidence 99874 9999999999999999999965
No 9
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=99.71 E-value=8.8e-18 Score=151.55 Aligned_cols=99 Identities=24% Similarity=0.478 Sum_probs=78.8
Q ss_pred ccchhhcccCCCCCcccceeeeecCCcccccccchhhhhccceeecCccc-cccccccccccCchhhhhccc-CCCceEE
Q 004370 423 TAGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQEERHFRGVVTLEECY-IEEVVEDEDAKSSKDKKKQAE-KGPSLIF 500 (758)
Q Consensus 423 ~~GwL~K~g~~~~~WkkRWFVL~~~sg~L~YyK~~~ek~~kG~I~L~~~~-v~~~~~~~~~~s~k~~~~np~-~~~~~~F 500 (758)
++|||.|+|+..+.|++|||||.++.+.|+||+++.+..++|.|+|..+. |....+.. . .|. ....+.|
T Consensus 1 ~~G~L~K~g~~~k~WkkRwFvL~~~~~~L~Yy~~~~~~~~~g~I~L~~~~~v~~~~~~~---~------~~~~~~~~~~f 71 (101)
T cd01235 1 CEGYLYKRGALLKGWKPRWFVLDPDKHQLRYYDDFEDTAEKGCIDLAEVKSVNLAQPGM---G------APKHTSRKGFF 71 (101)
T ss_pred CeEEEEEcCCCCCCccceEEEEECCCCEEEEecCCCCCccceEEEcceeEEEeecCCCC---C------CCCCCCCceEE
Confidence 47999999999999999999999766679999999999999999998765 33212110 0 011 1245678
Q ss_pred EEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHH
Q 004370 501 KITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVI 539 (758)
Q Consensus 501 ~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i 539 (758)
.|.++. |+|+|.|+|.+|+++|+.+||++|
T Consensus 72 ~i~t~~---------r~~~~~a~s~~e~~~Wi~ai~~~i 101 (101)
T cd01235 72 DLKTSK---------RTYNFLAENINEAQRWKEKIQQCI 101 (101)
T ss_pred EEEeCC---------ceEEEECCCHHHHHHHHHHHHhhC
Confidence 887764 999999999999999999999875
No 10
>PF02212 GED: Dynamin GTPase effector domain; InterPro: IPR003130 Dynamin GTPase effector domain found in proteins related to dynamin. Dynamin is a GTP-hydrolysing protein that is an essential participant in clathrin-mediated endocytosis by cells. It self-assembles into 'collars' in vivo at the necks of invaginated coated pits; the self-assembly of dynamin being coordinated by the GTPase domain. Mutation studies indicate that dynamin functions as a molecular regulator of receptor-mediated endocytosis [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3ZYS_B 3SZR_A 3LJB_B 3T35_C 3T34_A 2X2F_D 2X2E_D 3SNH_A 3ZYC_D 3ZVR_A.
Probab=99.70 E-value=4.9e-17 Score=145.99 Aligned_cols=88 Identities=28% Similarity=0.394 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhhhhhccHHHHHHhhhcCHHHHHHHHHHHHHHH
Q 004370 574 EEELRWMAQEVRGYVEAVLNSLNANVPKAVVLCQVEKAKEDMLNQLYSSISAQSTERIGELLQEDKNAKSRRELCQKQST 653 (758)
Q Consensus 574 ~~~~~~i~~~V~sY~~iV~k~i~d~VPKai~h~~V~~~k~~Ll~~LY~~~~~~~~~~~~~Ll~E~~~~~~rR~~~~~~~~ 653 (758)
+.+++.|..+|.+|++||++++.|+|||+|+||||+.+++.|+.+|+..+...+ .+..||.|||+++++|++|.++++
T Consensus 3 ~~~~~~i~~~l~aY~~ia~kr~~D~Vpk~I~~~lv~~~~~~L~~~l~~~l~~~~--~~~~Ll~Ed~~i~~kR~~l~~~~~ 80 (92)
T PF02212_consen 3 QREVEEIKALLRAYFEIARKRFIDSVPKAIMHFLVNKSKEQLQSELLNELYDEE--DLEELLQEDPEIAEKREELKKKLE 80 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCG--GCCCCT--GHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHhccchH--HHHHHHCCCHHHHHHHHHHHHHHH
Confidence 357899999999999999999999999999999999999999998888886554 388999999999999999999999
Q ss_pred HHHHHHHHhc
Q 004370 654 LLSKLIRQLG 663 (758)
Q Consensus 654 ~l~~~~~~l~ 663 (758)
.|++|.+.|+
T Consensus 81 ~L~~A~~~L~ 90 (92)
T PF02212_consen 81 RLKKAQQILS 90 (92)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999885
No 11
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.70 E-value=9.8e-18 Score=158.21 Aligned_cols=103 Identities=28% Similarity=0.531 Sum_probs=85.8
Q ss_pred cccchhhcccCCCCCcccceeeeecCCcccccccchhhhhccceeecCccccccccccccccCchhhhhcccCCCceEEE
Q 004370 422 ITAGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQEERHFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPSLIFK 501 (758)
Q Consensus 422 i~~GwL~K~g~~~~~WkkRWFVL~~~sg~L~YyK~~~ek~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~~~F~ 501 (758)
.++|||.|+|+..+.|++|||||++. .|+||+++++.+++|+|+|.+|.|..+++. .++++|.
T Consensus 1 ~k~G~L~K~~~~~~~WkkRwfvL~~~--~L~yyk~~~~~~~~g~I~L~~~~v~~~~~~---------------~~~~~F~ 63 (125)
T cd01252 1 DREGWLLKQGGRVKTWKRRWFILTDN--CLYYFEYTTDKEPRGIIPLENVSIREVEDP---------------SKPFCFE 63 (125)
T ss_pred CcEEEEEEeCCCCCCeEeEEEEEECC--EEEEEcCCCCCCceEEEECCCcEEEEcccC---------------CCCeeEE
Confidence 36899999998889999999999976 499999999999999999999988765432 2567899
Q ss_pred EeccCc------------chhhhhhhhhhhhhccChHHHHHHHHhhHHHHhh
Q 004370 502 ITSKVP------------YKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 502 I~t~~~------------~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~~ 541 (758)
|.+++. +.++.+.++.|+|+|+|.+|+.+|+.+|+.++.+
T Consensus 64 i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~A~s~~e~~~Wi~al~~~~~~ 115 (125)
T cd01252 64 LFSPSDKQQIKACKTESDGRVVEGNHSVYRISAANDEEMDEWIKSIKASISP 115 (125)
T ss_pred EECCccccccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHHHhc
Confidence 887752 1123345688999999999999999999999886
No 12
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=99.69 E-value=1.1e-17 Score=150.41 Aligned_cols=91 Identities=25% Similarity=0.517 Sum_probs=77.6
Q ss_pred ccchhhcccCCCC----CcccceeeeecCCcccccccchhhhhccceeecCccccccccccccccCchhhhhcccCCCce
Q 004370 423 TAGFLLKKSSKTN----GWSKRWFVLNEKTGKLGYTKKQEERHFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPSL 498 (758)
Q Consensus 423 ~~GwL~K~g~~~~----~WkkRWFVL~~~sg~L~YyK~~~ek~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~~ 498 (758)
++|||.|++...+ .|++|||||.++ .|+||+++.+..+.|+|+|.+++|....+. ++.+
T Consensus 2 ~~GwL~kk~~~~g~~~k~WkkrwfvL~~~--~L~yyk~~~~~~~~~~I~L~~~~v~~~~~~---------------~k~~ 64 (96)
T cd01260 2 CDGWLWKRKKPGGFMGQKWARRWFVLKGT--TLYWYRSKQDEKAEGLIFLSGFTIESAKEV---------------KKKY 64 (96)
T ss_pred ceeEEEEecCCCCccccCceeEEEEEECC--EEEEECCCCCCccceEEEccCCEEEEchhc---------------CCce
Confidence 6899999965544 899999999976 599999999999999999999987654321 2678
Q ss_pred EEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHH
Q 004370 499 IFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVV 538 (758)
Q Consensus 499 ~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~ 538 (758)
+|.|.+++ .++|+|+|+|.+|+..|+.+|+.+
T Consensus 65 ~F~I~~~~--------~~~~~f~a~s~~e~~~Wi~ai~~~ 96 (96)
T cd01260 65 AFKVCHPV--------YKSFYFAAETLDDLSQWVNHLITA 96 (96)
T ss_pred EEEECCCC--------CcEEEEEeCCHHHHHHHHHHHHhC
Confidence 99999874 489999999999999999999763
No 13
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=99.67 E-value=5.1e-15 Score=164.01 Aligned_cols=267 Identities=15% Similarity=0.154 Sum_probs=177.2
Q ss_pred HHHHHhcCCCCeEEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCCcchhHHHHHHHHHcCCC-CCCCCC
Q 004370 4 AMISKYVERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAEGDSKALAAVRALLLNQG-PPKTSD 82 (758)
Q Consensus 4 ~mV~~YI~~~ntIILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd~gt~~~~~~~~iL~nk~-pl~~~~ 82 (758)
.|.+.||++||+||||+-... ||.+.|-.-.|.-+.||.|.|||-||||+|+.++.--..+.+..||+|+. |.+.
T Consensus 440 ~msKayM~NPNAIILCIQDGS--VDAERSnVTDLVsq~DP~GrRTIfVLTKVDlAEknlA~PdRI~kIleGKLFPMKA-- 515 (980)
T KOG0447|consen 440 SISKAYMQNPNAIILCIQDGS--VDAERSIVTDLVSQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQIIEGKLFPMKA-- 515 (980)
T ss_pred HHHHHHhcCCCeEEEEeccCC--cchhhhhHHHHHHhcCCCCCeeEEEEeecchhhhccCCHHHHHHHHhcCccchhh--
Confidence 588999999999999999988 69999999999999999999999999999999875444567899999999 9997
Q ss_pred CCEEEEEcCCcccccccccCcccCCCHHHHHHHHHHHHhhcC-C--C-CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 004370 83 IPWVAVIGQSVAISSVTSSGAAADSSLEAAWRAEVETLKRLL-S--G-APQNKLGRVALVDTIAGQIRNRMSLRVPKLLS 158 (758)
Q Consensus 83 lGy~~V~nRs~~~~~~Q~d~i~~~~s~~~a~~~E~~FF~s~~-~--~-~~~~r~G~~~L~~~Ls~~L~~hI~~~LP~l~~ 158 (758)
||||+|+.-. .+...||++.++-|++||.++. . + +.++.+.+.+|.-.+|.-....+|.++-.-..
T Consensus 516 LGYfaVVTGr----------GnssdSIdaIR~YEE~FF~nSkLl~~~vlkphQvTtRNlSLAVSDcFWkMVResiEqQaD 585 (980)
T KOG0447|consen 516 LGYFAVVTGK----------GNSSESIEAIREYEEEFFQNSKLLKTSMLKAHQVTTRNLSLAVSDCFWKMVRESVEQQAD 585 (980)
T ss_pred cceeEEEecC----------CCcchhHHHHHHHHHHHhhhhHHHHhhccchhhhcccchhHHHHHHHHHHHHHHHHHHHH
Confidence 8999987543 2466799999999999999974 2 2 45789999999999999999999998887777
Q ss_pred HHHHhHHHHHHHHHH-cCCCCCCC----hHHHHHHHHHHHH--------HHHHHHHHhhcCCCCCcchHH-HHHhcchhh
Q 004370 159 GLQGKSQIVQDELLK-LGDQILEN----TEGTKALALQLCR--------EFEDKFLQHITGGEGNGWKVV-ASFEGNFPN 224 (758)
Q Consensus 159 ~I~~~l~~~e~eL~~-LG~~~~~~----~e~~~~~ll~li~--------~F~~~f~~~I~G~~~gGarI~-~if~e~F~~ 224 (758)
.....--.++.|... |+.-+... -+..+..+|.-+- ...+.+.+.+- .+|. .+|+..++.
T Consensus 586 aFkAtrFNLEtEWKNnfpRlRel~RdELfdKAkgEILDEvi~lsqv~~k~w~e~l~~~~~------e~vs~~~~~~~~lp 659 (980)
T KOG0447|consen 586 SFKATRFNLETEWKNNYPRLRELDRNELFEKAKNEILDEVISLSQVTPKHWEEILQQSLW------ERVSTHVIENIYLP 659 (980)
T ss_pred HHHHhhhhhhhhhhhcChHhhhcChHHHHHHhhhhHHHHHHhhhhcChhhHHHHHHHHHH------HHhhhhhhhhccch
Confidence 777777777776542 22111110 1111222222111 11111111110 0111 112222221
Q ss_pred hhccCCCCcccChhhHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 004370 225 RMKQLPLDRHFDMKNVKRVVLEADGYQPYLISPEKGLRSLIKSVLEMAKEPSRLCVDEVHRVLVDIVS 292 (758)
Q Consensus 225 ~i~~lp~~~~~~~~~Vr~~I~~~~G~~~~lf~P~~afe~Lik~qi~~~~~Pa~~cvd~V~~~L~~iv~ 292 (758)
.-..+......+.-+|+ +..-...+++.-.-+.+++.|-..+.....+|+-+--|.|++.|...|.
T Consensus 660 aA~~~~sg~FnttvdIk--lk~w~DKqL~~k~ve~~w~tl~e~f~r~~~~~~~k~hd~ifd~lkeav~ 725 (980)
T KOG0447|consen 660 AAQTMNSGTFNTTVDIK--LKQWTDKQLPNKAVEVAWETLQEEFSRFMTEPKGKEHDDIFDKLKEAVK 725 (980)
T ss_pred hhhcccccccceeehhh--hhhhhhhhcchhhhHHHHHHHHHHHHHHhccccccccchHHHHHHHHHH
Confidence 11111111111122332 1112223455556677888888888888888887777777777777663
No 14
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=2.2e-17 Score=170.18 Aligned_cols=115 Identities=25% Similarity=0.428 Sum_probs=91.8
Q ss_pred cccchhhcccC-CCCCcccceeeeecCCcccccccchhhhhccceeecCccccccccccccccCchhhhhcccCCCceEE
Q 004370 422 ITAGFLLKKSS-KTNGWSKRWFVLNEKTGKLGYTKKQEERHFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPSLIF 500 (758)
Q Consensus 422 i~~GwL~K~g~-~~~~WkkRWFVL~~~sg~L~YyK~~~ek~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~~~F 500 (758)
.++|||.|.|+ ..++||||||||++++ ||||.-.+|++|+|+|+|+++.|+.+++. .+..+.+.++|..+...+=
T Consensus 261 dREGWLlKlgg~rvktWKrRWFiLtdNC--LYYFe~tTDKEPrGIIpLeNlsir~VedP--~kP~cfEly~ps~~gq~IK 336 (395)
T KOG0930|consen 261 DREGWLLKLGGNRVKTWKRRWFILTDNC--LYYFEYTTDKEPRGIIPLENLSIREVEDP--KKPNCFELYIPSNKGQVIK 336 (395)
T ss_pred cccceeeeecCCcccchhheeEEeecce--eeeeeeccCCCCCcceeccccceeeccCC--CCCCeEEEecCCCCcCeee
Confidence 78999999977 6889999999999986 99999999999999999999999998864 2333334455443333222
Q ss_pred EEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHh
Q 004370 501 KITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQ 540 (758)
Q Consensus 501 ~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~ 540 (758)
...|...++.|...|..|.++|.|.+|+++|+.+|++.+.
T Consensus 337 ACKTe~DGRvVEG~H~vYrIsA~~~Ee~~~Wi~sI~a~is 376 (395)
T KOG0930|consen 337 ACKTEADGRVVEGNHSVYRISAPTPEEKDEWIKSIKAAIS 376 (395)
T ss_pred eecccCCceeEeccceEEEeeCCCHHHHHHHHHHHHHHhc
Confidence 2223223678888999999999999999999999999886
No 15
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=99.66 E-value=4e-17 Score=150.16 Aligned_cols=98 Identities=22% Similarity=0.362 Sum_probs=74.4
Q ss_pred cccchhhcccCC-----CCCcccceeeeecCCcccccccchhhh--hccceeecCcccccc-ccccccccCchhhhhccc
Q 004370 422 ITAGFLLKKSSK-----TNGWSKRWFVLNEKTGKLGYTKKQEER--HFRGVVTLEECYIEE-VVEDEDAKSSKDKKKQAE 493 (758)
Q Consensus 422 i~~GwL~K~g~~-----~~~WkkRWFVL~~~sg~L~YyK~~~ek--~~kG~I~L~~~~v~~-~~~~~~~~s~k~~~~np~ 493 (758)
|++|||.|++.. ..+||+|||||++. .|+||+++.+. .++|.|+|.++.+.. +.+... .. . .
T Consensus 1 ~k~g~l~Kr~~~~~~~~~~nwKkRwFvL~~~--~L~Yyk~~~~~~~~~kG~I~L~~~~~ve~~~~~~~-~~------~-~ 70 (106)
T cd01238 1 ILESILVKRSQQKKKTSPLNYKERLFVLTKS--KLSYYEGDFEKRGSKKGSIDLSKIKCVETVKPEKN-PP------I-P 70 (106)
T ss_pred CcceeeeeeccCCCCCCCCCceeEEEEEcCC--EEEEECCCcccccCcceeEECCcceEEEEecCCcC-cc------c-c
Confidence 578999999633 24999999999865 59999998874 899999998876433 222110 00 0 0
Q ss_pred CCCceEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHH
Q 004370 494 KGPSLIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVV 538 (758)
Q Consensus 494 ~~~~~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~ 538 (758)
....++|.|.+++ ++|+|.|+|++|+++|+.+|+.+
T Consensus 71 ~~~~~~F~i~t~~---------r~~yl~A~s~~er~~WI~ai~~~ 106 (106)
T cd01238 71 ERFKYPFQVVHDE---------GTLYVFAPTEELRKRWIKALKQV 106 (106)
T ss_pred cccCccEEEEeCC---------CeEEEEcCCHHHHHHHHHHHHhC
Confidence 1246899999985 89999999999999999999763
No 16
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=99.65 E-value=7.4e-17 Score=144.58 Aligned_cols=87 Identities=32% Similarity=0.548 Sum_probs=72.9
Q ss_pred ccchhhcccCCCCCcccceeeeecCCcccccccchhhh--hccceeecCccccccccccccccCchhhhhcccCCCceEE
Q 004370 423 TAGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQEER--HFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPSLIF 500 (758)
Q Consensus 423 ~~GwL~K~g~~~~~WkkRWFVL~~~sg~L~YyK~~~ek--~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~~~F 500 (758)
.+|||.|.|...++||+|||||.+ |.|+|||++.+. .++|.|+|.+|.+...+ ..++.|
T Consensus 1 ~~G~L~K~~~~~k~Wk~RwFvL~~--g~L~Yyk~~~~~~~~~~G~I~L~~~~i~~~~-----------------~~~~~F 61 (91)
T cd01247 1 TNGVLSKWTNYINGWQDRYFVLKE--GNLSYYKSEAEKSHGCRGSIFLKKAIIAAHE-----------------FDENRF 61 (91)
T ss_pred CceEEEEeccccCCCceEEEEEEC--CEEEEEecCccCcCCCcEEEECcccEEEcCC-----------------CCCCEE
Confidence 379999999999999999999974 579999998874 47999999998765321 135789
Q ss_pred EEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhH
Q 004370 501 KITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLR 536 (758)
Q Consensus 501 ~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiR 536 (758)
.|.+.. .++|+|.|+|++|+++|+.+|+
T Consensus 62 ~i~~~~--------~r~~~L~A~s~~e~~~Wi~al~ 89 (91)
T cd01247 62 DISVNE--------NVVWYLRAENSQSRLLWMDSVV 89 (91)
T ss_pred EEEeCC--------CeEEEEEeCCHHHHHHHHHHHh
Confidence 997653 4999999999999999999995
No 17
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=99.63 E-value=2.6e-16 Score=145.00 Aligned_cols=98 Identities=26% Similarity=0.292 Sum_probs=75.4
Q ss_pred ccchhhcccCC----CCCcccceeeeecCC-----cccccccchhhhhccceeecCccccccccccccccCchhhhhccc
Q 004370 423 TAGFLLKKSSK----TNGWSKRWFVLNEKT-----GKLGYTKKQEERHFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAE 493 (758)
Q Consensus 423 ~~GwL~K~g~~----~~~WkkRWFVL~~~s-----g~L~YyK~~~ek~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~ 493 (758)
++|||.|+|+. .++||+|||||.+.+ ..|+|||++.+..++|+|+|..|.+.+...... .. .
T Consensus 1 ~eGwL~K~~~~~~~~~~~WkrRwFvL~~~~l~~~~~~L~Yyk~~~~~k~~g~I~L~~~~~v~~~~~~~-~~--------~ 71 (108)
T cd01266 1 LEGWLKKSPPYKLLFRTKWVRRYFVLHCGDRERNLFALEYYKTSRKFKLEFVIDLESCSQVDPGLLCT-AG--------N 71 (108)
T ss_pred CceeeeeCCccccccccCcEEEEEEEeccccCCCcceEEEECCCCCCccceEEECCccEEEccccccc-cc--------C
Confidence 47999999874 359999999999653 236999999999999999999876543211000 00 0
Q ss_pred CCCceEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHH
Q 004370 494 KGPSLIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVV 538 (758)
Q Consensus 494 ~~~~~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~ 538 (758)
....+.|.|.++. |+|+|.|+|++|+++|+.+|+.+
T Consensus 72 ~~~~~~f~i~t~~---------r~y~l~A~s~ee~~~Wi~~I~~~ 107 (108)
T cd01266 72 CIFGYGFDIETIV---------RDLYLVAKNEEEMTLWVNCICKL 107 (108)
T ss_pred cccceEEEEEeCC---------ccEEEEECCHHHHHHHHHHHHhh
Confidence 1245789999874 99999999999999999999764
No 18
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.62 E-value=2.3e-16 Score=143.80 Aligned_cols=95 Identities=21% Similarity=0.354 Sum_probs=75.9
Q ss_pred ccchhhcccC---CCCCcccceeeeecCCcccccccchhhhhcc-ceeecCccccccccccccccCchhhhhcccCCCce
Q 004370 423 TAGFLLKKSS---KTNGWSKRWFVLNEKTGKLGYTKKQEERHFR-GVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPSL 498 (758)
Q Consensus 423 ~~GwL~K~g~---~~~~WkkRWFVL~~~sg~L~YyK~~~ek~~k-G~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~~ 498 (758)
.+|||.|+|+ ..++|++|||||+++. |+|||+..+..+. |+|+|..|.....+... .. ..+..+
T Consensus 2 ~~G~l~k~~g~~r~~K~WkrRwF~L~~~~--L~y~K~~~~~~~~~g~IdL~~~~sVk~~~~~--~~--------~~~~~~ 69 (101)
T cd01264 2 IEGQLKEKKGRWRFIKRWKTRYFTLSGAQ--LLFQKGKSKDDPDDCSIDLSKIRSVKAVAKK--RR--------DRSLPK 69 (101)
T ss_pred cceEEeecCccceeeecceeEEEEEeCCE--EEEEeccCccCCCCceEEcccceEEeecccc--cc--------ccccCc
Confidence 5899999998 6899999999999775 9999998765555 99999998743322211 00 012468
Q ss_pred EEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHH
Q 004370 499 IFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVV 538 (758)
Q Consensus 499 ~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~ 538 (758)
+|.|.++. |+|+|+|+|++|+++|+.+|..+
T Consensus 70 ~Fei~tp~---------rt~~l~A~se~e~e~WI~~i~~a 100 (101)
T cd01264 70 AFEIFTAD---------KTYILKAKDEKNAEEWLQCLNIA 100 (101)
T ss_pred EEEEEcCC---------ceEEEEeCCHHHHHHHHHHHHhh
Confidence 99999996 99999999999999999999544
No 19
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=99.59 E-value=8.3e-16 Score=140.41 Aligned_cols=88 Identities=25% Similarity=0.446 Sum_probs=72.8
Q ss_pred cccchhhcccCCCCCcccceeeeecCC----cccccccchhh-----hhccceeecCccccccccccccccCchhhhhcc
Q 004370 422 ITAGFLLKKSSKTNGWSKRWFVLNEKT----GKLGYTKKQEE-----RHFRGVVTLEECYIEEVVEDEDAKSSKDKKKQA 492 (758)
Q Consensus 422 i~~GwL~K~g~~~~~WkkRWFVL~~~s----g~L~YyK~~~e-----k~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np 492 (758)
+++|||.|+ +.||||||||...+ ..|.||+++.+ ..|+|+|+|.+|....-. +
T Consensus 3 ~k~GyL~K~----K~~kkRwFVLr~~~~~~p~~Leyyk~ek~~~~~~~~p~~vI~L~~c~~v~~~--------------~ 64 (101)
T cd01257 3 RKSGYLRKQ----KSMHKRFFVLRAESSGGPARLEYYENEKKFLQKGSAPKRVIPLESCFNINKR--------------A 64 (101)
T ss_pred cEEEEEeEe----cCcEeEEEEEecCCCCCCceEEEECChhhccccCCCceEEEEccceEEEeec--------------c
Confidence 789999997 78999999999762 26999999975 789999999999742111 1
Q ss_pred cCCCceEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhH
Q 004370 493 EKGPSLIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLR 536 (758)
Q Consensus 493 ~~~~~~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiR 536 (758)
+....++|.|.+++ ++|+|.|+|++|+++|+.+|-
T Consensus 65 d~k~~~~f~i~t~d---------r~f~l~aese~E~~~Wi~~i~ 99 (101)
T cd01257 65 DAKHRHLIALYTRD---------EYFAVAAENEAEQDSWYQALL 99 (101)
T ss_pred ccccCeEEEEEeCC---------ceEEEEeCCHHHHHHHHHHHh
Confidence 22246899999986 899999999999999999983
No 20
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.59 E-value=8.5e-16 Score=139.45 Aligned_cols=94 Identities=19% Similarity=0.346 Sum_probs=79.2
Q ss_pred ccchhhcccCC-CCCcccceeeeec--CCcccccccchhhhhccceeecCccccccccccccccCchhhhhcccCCCceE
Q 004370 423 TAGFLLKKSSK-TNGWSKRWFVLNE--KTGKLGYTKKQEERHFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPSLI 499 (758)
Q Consensus 423 ~~GwL~K~g~~-~~~WkkRWFVL~~--~sg~L~YyK~~~ek~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~~~ 499 (758)
+.|||.|+|+. .+.||+|||||.. ....|+||+++.+++++|.|+|+++.|..+.+.. .+++++
T Consensus 1 ~~G~l~K~g~~~~K~wK~rwF~l~~~~s~~~l~yf~~~~~~~p~gli~l~~~~V~~v~ds~-------------~~r~~c 67 (98)
T cd01245 1 KKGNLLKRTKSVTKLWKTLYFALILDGSRSHESLLSSPKKTKPIGLIDLSDAYLYPVHDSL-------------FGRPNC 67 (98)
T ss_pred CCCccccCCCCcccccceeEEEEecCCCCceEEEEcCCCCCCccceeeccccEEEEccccc-------------cCCCeE
Confidence 46999999887 8999999999974 2236999999999999999999999888776541 136799
Q ss_pred EEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHH
Q 004370 500 FKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRV 537 (758)
Q Consensus 500 F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa 537 (758)
|.|.++. .|..|+++|++ +|+++||.+|++
T Consensus 68 Fel~~~~-------~~~~y~~~a~~-~er~~Wi~~l~~ 97 (98)
T cd01245 68 FQIVERA-------LPTVYYSCRSS-EERDKWIESLQA 97 (98)
T ss_pred EEEecCC-------CCeEEEEeCCH-HHHHHHHHHHhc
Confidence 9999885 24689999999 999999999975
No 21
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.57 E-value=1.3e-15 Score=139.79 Aligned_cols=90 Identities=26% Similarity=0.506 Sum_probs=70.6
Q ss_pred ccchhhcccC---------CCCCcccceeeeecCCcccccccch-hhhhccceeecCcccc-ccccccccccCchhhhhc
Q 004370 423 TAGFLLKKSS---------KTNGWSKRWFVLNEKTGKLGYTKKQ-EERHFRGVVTLEECYI-EEVVEDEDAKSSKDKKKQ 491 (758)
Q Consensus 423 ~~GwL~K~g~---------~~~~WkkRWFVL~~~sg~L~YyK~~-~ek~~kG~I~L~~~~v-~~~~~~~~~~s~k~~~~n 491 (758)
+.|||.|.++ ..++||||||||++. |.|+||+++ .+..++|+|+|..|.. ...++.
T Consensus 1 ~~g~l~~~~~~~~~~~~~~~~K~WkrRWFvL~~~-~~L~y~~d~~~~~~p~G~IdL~~~~~V~~~~~~------------ 67 (104)
T cd01236 1 YCGWLLVAPDGTDFDNPVHRSKRWQRRWFILYDH-GLLTYALDEMPTTLPQGTIDMNQCTDVVDAEAR------------ 67 (104)
T ss_pred CcceeEEcCCCCcccccceeeccccceEEEEeCC-CEEEEeeCCCCCcccceEEEccceEEEeecccc------------
Confidence 3699999842 267999999999854 468888776 4789999999988764 222211
Q ss_pred ccCCCceEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhH
Q 004370 492 AEKGPSLIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLR 536 (758)
Q Consensus 492 p~~~~~~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiR 536 (758)
.+..++|.|.+++ |+|+|.|+|++|+++|+.+|.
T Consensus 68 --~~~~~~f~I~tp~---------R~f~l~Aete~E~~~Wi~~l~ 101 (104)
T cd01236 68 --TGQKFSICILTPD---------KEHFIKAETKEEISWWLNMLM 101 (104)
T ss_pred --cCCccEEEEECCC---------ceEEEEeCCHHHHHHHHHHHH
Confidence 1246899999996 999999999999999999984
No 22
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.51 E-value=7.1e-15 Score=129.16 Aligned_cols=89 Identities=31% Similarity=0.562 Sum_probs=75.9
Q ss_pred ccchhhcccCCCCCcccceeeeecCCcccccccchhhh--hccceeecCccccccccccccccCchhhhhcccCCCceEE
Q 004370 423 TAGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQEER--HFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPSLIF 500 (758)
Q Consensus 423 ~~GwL~K~g~~~~~WkkRWFVL~~~sg~L~YyK~~~ek--~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~~~F 500 (758)
.+|||.|+++..+.|++|||||.+. .|+||+++.+. .+.|.|+|.+|.+.... ...+.|
T Consensus 1 ~~G~L~k~~~~~~~W~~r~~vl~~~--~L~~~~~~~~~~~~~~~~i~l~~~~~~~~~-----------------~~~~~F 61 (91)
T cd01246 1 VEGWLLKWTNYLKGWQKRWFVLDNG--LLSYYKNKSSMRGKPRGTILLSGAVISEDD-----------------SDDKCF 61 (91)
T ss_pred CeEEEEEecccCCCceeeEEEEECC--EEEEEecCccCCCCceEEEEeceEEEEECC-----------------CCCcEE
Confidence 3799999998889999999999965 59999999988 89999999998764311 136899
Q ss_pred EEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHH
Q 004370 501 KITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVV 538 (758)
Q Consensus 501 ~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~ 538 (758)
.|.+++ .++|+|+|+|.+|+.+|+.+|+.+
T Consensus 62 ~i~~~~--------~~~~~~~a~s~~e~~~Wi~al~~a 91 (91)
T cd01246 62 TIDTGG--------DKTLHLRANSEEERQRWVDALELA 91 (91)
T ss_pred EEEcCC--------CCEEEEECCCHHHHHHHHHHHHhC
Confidence 999874 489999999999999999999763
No 23
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.47 E-value=2.9e-14 Score=126.01 Aligned_cols=90 Identities=24% Similarity=0.565 Sum_probs=75.2
Q ss_pred ccchhhcccCC-CCCcccceeeeecCCcccccccchhh--hhccceeecCccccccccccccccCchhhhhcccCCCceE
Q 004370 423 TAGFLLKKSSK-TNGWSKRWFVLNEKTGKLGYTKKQEE--RHFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPSLI 499 (758)
Q Consensus 423 ~~GwL~K~g~~-~~~WkkRWFVL~~~sg~L~YyK~~~e--k~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~~~ 499 (758)
++|||.|+++. .+.|++|||||.+. .|.||+++.+ ..+.+.|+|..|.|...... .++.++
T Consensus 1 k~G~L~kk~~~~~~~W~kr~~~L~~~--~l~~y~~~~~~~~~~~~~i~l~~~~v~~~~~~--------------~~~~~~ 64 (94)
T cd01250 1 KQGYLYKRSSKSNKEWKKRWFVLKNG--QLTYHHRLKDYDNAHVKEIDLRRCTVRHNGKQ--------------PDRRFC 64 (94)
T ss_pred CcceEEEECCCcCCCceEEEEEEeCC--eEEEEcCCcccccccceEEeccceEEecCccc--------------cCCceE
Confidence 47999999865 78899999999955 5999999887 67789999998887654322 125789
Q ss_pred EEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHH
Q 004370 500 FKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRV 537 (758)
Q Consensus 500 F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa 537 (758)
|.|.+++ ++|+|+|+|.+|+.+|+.+|+.
T Consensus 65 f~i~~~~---------~~~~f~a~s~~~~~~Wi~al~~ 93 (94)
T cd01250 65 FEVISPT---------KTWHFQADSEEERDDWISAIQE 93 (94)
T ss_pred EEEEcCC---------cEEEEECCCHHHHHHHHHHHhc
Confidence 9999874 8999999999999999999965
No 24
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.47 E-value=3.6e-14 Score=129.69 Aligned_cols=100 Identities=22% Similarity=0.321 Sum_probs=70.1
Q ss_pred cccchhhcccCCCCCcccceeeeecCCcccccccchhhhhccceeecCccccccccccccccCchhhhhcccCCCceEEE
Q 004370 422 ITAGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQEERHFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPSLIFK 501 (758)
Q Consensus 422 i~~GwL~K~g~~~~~WkkRWFVL~~~sg~L~YyK~~~ek~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~~~F~ 501 (758)
+++|||.|+|+..+.|++|||||+.+ |.|.||++..+....|.|+|.+..|....... .+..+.+.|.
T Consensus 2 ~k~G~L~K~g~~~~~Wk~R~f~L~~~-~~l~~yk~~~~~~~~~~i~l~~~~v~~~~~~~-----------~~~~~~~~F~ 69 (102)
T cd01241 2 VKEGWLHKRGEYIKTWRPRYFLLKSD-GSFIGYKEKPEDGDPFLPPLNNFSVAECQLMK-----------TERPRPNTFI 69 (102)
T ss_pred cEEEEEEeecCCCCCCeeEEEEEeCC-CeEEEEecCCCccCccccccCCeEEeeeeeee-----------ccCCCcceEE
Confidence 78999999999999999999999943 35888887655555689999887765432110 0122557888
Q ss_pred EeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHH
Q 004370 502 ITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVV 538 (758)
Q Consensus 502 I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~ 538 (758)
|.+.... .+ -.|+| .|+|.+|+++|+.+|+.+
T Consensus 70 i~~~~~~-~~--~~r~f--~a~s~ee~~eWi~ai~~v 101 (102)
T cd01241 70 IRCLQWT-TV--IERTF--HVESPEEREEWIHAIQTV 101 (102)
T ss_pred EEeccCC-cc--cCEEE--EeCCHHHHHHHHHHHHhh
Confidence 8721100 00 02444 699999999999999876
No 25
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=99.43 E-value=7.8e-14 Score=123.01 Aligned_cols=99 Identities=30% Similarity=0.540 Sum_probs=83.5
Q ss_pred cccchhhcccCCCCCcccceeeeecCCcccccccchh---hhhccceeecCccccccccccccccCchhhhhcccCCCce
Q 004370 422 ITAGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQE---ERHFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPSL 498 (758)
Q Consensus 422 i~~GwL~K~g~~~~~WkkRWFVL~~~sg~L~YyK~~~---ek~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~~ 498 (758)
+++|||.|++...+.|++|||||.+. .|+||+++. ...+.+.|+|.++.|........ . +.....+
T Consensus 2 ~~~G~L~~~~~~~~~wk~r~~vL~~~--~L~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~~~~-~--------~~~~~~~ 70 (104)
T PF00169_consen 2 IKEGWLLKKSSSRKKWKKRYFVLRDS--YLLYYKSSKDKSDSKPKGSIPLDDCTVRPDPSSDF-L--------SNKKRKN 70 (104)
T ss_dssp EEEEEEEEEESSSSSEEEEEEEEETT--EEEEESSTTTTTESSESEEEEGTTEEEEEETSSTS-T--------STSSSSS
T ss_pred EEEEEEEEECCCCCCeEEEEEEEECC--EEEEEecCccccceeeeEEEEecCceEEEcCcccc-c--------cccCCCc
Confidence 68999999998889999999999986 499999998 68899999999998876654310 0 1124789
Q ss_pred EEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHH
Q 004370 499 IFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVI 539 (758)
Q Consensus 499 ~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i 539 (758)
+|.|.++. .++|+|.|+|.+++..|+.+|+.++
T Consensus 71 ~f~i~~~~--------~~~~~~~~~s~~~~~~W~~~i~~~~ 103 (104)
T PF00169_consen 71 CFEITTPN--------GKSYLFSAESEEERKRWIQAIQKAI 103 (104)
T ss_dssp EEEEEETT--------SEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred EEEEEeCC--------CcEEEEEcCCHHHHHHHHHHHHHHh
Confidence 99999985 3699999999999999999998875
No 26
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.41 E-value=1.4e-13 Score=125.26 Aligned_cols=79 Identities=20% Similarity=0.275 Sum_probs=64.6
Q ss_pred CCCcccceeeeecCCcccccccchhhhhccceeecCccccc-cccccccccCchhhhhcccCCCceEEEEeccCcchhhh
Q 004370 434 TNGWSKRWFVLNEKTGKLGYTKKQEERHFRGVVTLEECYIE-EVVEDEDAKSSKDKKKQAEKGPSLIFKITSKVPYKTVL 512 (758)
Q Consensus 434 ~~~WkkRWFVL~~~sg~L~YyK~~~ek~~kG~I~L~~~~v~-~~~~~~~~~s~k~~~~np~~~~~~~F~I~t~~~~k~v~ 512 (758)
..+||+|||||++. .|+|||++. ..++|.|+|..+... .+.++. .+..++|.|.+++
T Consensus 18 ~~n~KkRwF~Lt~~--~L~Y~k~~~-~~~~g~I~L~~i~~ve~v~~~~-------------~~~~~~fqivt~~------ 75 (98)
T cd01244 18 VLHFKKRYFQLTTT--HLSWAKDVQ-CKKSALIKLAAIKGTEPLSDKS-------------FVNVDIITIVCED------ 75 (98)
T ss_pred CcCCceeEEEECCC--EEEEECCCC-CceeeeEEccceEEEEEcCCcc-------------cCCCceEEEEeCC------
Confidence 36899999999976 499999886 789999999887643 333221 1246899999986
Q ss_pred hhhhhhhhhccChHHHHHHHHhhHH
Q 004370 513 KAHSALLLKAENMAEKFEWLNKLRV 537 (758)
Q Consensus 513 k~~r~~~L~AeS~eE~~~Wv~aiRa 537 (758)
++|+|.|+|.+|+++|+.+|+.
T Consensus 76 ---r~~yi~a~s~~E~~~Wi~al~k 97 (98)
T cd01244 76 ---DTMQLQFEAPVEATDWLNALEK 97 (98)
T ss_pred ---CeEEEECCCHHHHHHHHHHHhc
Confidence 8999999999999999999975
No 27
>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain. Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.29 E-value=1.3e-12 Score=123.13 Aligned_cols=101 Identities=22% Similarity=0.413 Sum_probs=72.7
Q ss_pred ccchhhc-c-cCCCCCcccceeeeecCCcccccccchhh---hhccceeecCccccccccccccccCchhhhhcccCCCc
Q 004370 423 TAGFLLK-K-SSKTNGWSKRWFVLNEKTGKLGYTKKQEE---RHFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPS 497 (758)
Q Consensus 423 ~~GwL~K-~-g~~~~~WkkRWFVL~~~sg~L~YyK~~~e---k~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~ 497 (758)
-.|||.- + .+..++|++|||||.+. .|+||+.+++ +.|.|.|+|.+|.+..++... + +...++
T Consensus 3 ~~GfL~~~q~~~~~k~W~RRWFvL~g~--~L~y~k~p~d~~~~~Plg~I~L~~c~~~~v~~~~-----r-----~~c~Rp 70 (122)
T cd01263 3 YHGFLTMFEDTSGFGAWHRRWCALEGG--EIKYWKYPDDEKRKGPTGLIDLSTCTSSEGASAV-----R-----DICARP 70 (122)
T ss_pred cceeEEEEeccCCCCCceEEEEEEeCC--EEEEEcCCCccccCCceEEEEhhhCcccccccCC-----h-----hhcCCC
Confidence 4689975 3 45678999999999965 5999998876 778999999999987765321 0 123467
Q ss_pred eEEEEeccCcc-------------hhhhhhhhhhhhhccChHHHHHHHHhhHH
Q 004370 498 LIFKITSKVPY-------------KTVLKAHSALLLKAENMAEKFEWLNKLRV 537 (758)
Q Consensus 498 ~~F~I~t~~~~-------------k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa 537 (758)
+.|.|....+. ..+. ..-++|+|+|.+|+++|+++|..
T Consensus 71 ~tF~i~~~~~~~~~~~~~~~~~~~~~~~--r~~~~lsaDt~eer~~W~~ain~ 121 (122)
T cd01263 71 NTFHLDVWRPKMETDDETLVSQCRRGIE--RLRVMLSADTKEERQTWLSLLNS 121 (122)
T ss_pred CeEEEEEecccccccccceeeccCCcee--EEEEEEecCCHHHHHHHHHHHhc
Confidence 78888643211 0111 11268999999999999999954
No 28
>PF15409 PH_8: Pleckstrin homology domain
Probab=99.28 E-value=2.4e-12 Score=114.70 Aligned_cols=87 Identities=31% Similarity=0.516 Sum_probs=72.7
Q ss_pred chhhccc-CCCCCcccceeeeecCCcccccccchhhhhccceeecCccccccccccccccCchhhhhcccCCCceEEEEe
Q 004370 425 GFLLKKS-SKTNGWSKRWFVLNEKTGKLGYTKKQEERHFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPSLIFKIT 503 (758)
Q Consensus 425 GwL~K~g-~~~~~WkkRWFVL~~~sg~L~YyK~~~ek~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~~~F~I~ 503 (758)
|||.|+. -...+|++|||||+-+.|.|.||+++.+...+|.|+|..+.|..- .....|.|.
T Consensus 1 G~llKkrr~~lqG~~kRyFvL~~~~G~LsYy~~~~~~~~rGsi~v~~a~is~~------------------~~~~~I~id 62 (89)
T PF15409_consen 1 GWLLKKRRKPLQGWHKRYFVLDFEKGTLSYYRNQNSGKLRGSIDVSLAVISAN------------------KKSRRIDID 62 (89)
T ss_pred CcceeeccccCCCceeEEEEEEcCCcEEEEEecCCCCeeEeEEEccceEEEec------------------CCCCEEEEE
Confidence 8998884 457899999999987778999999999989999999988765321 145678888
Q ss_pred ccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHH
Q 004370 504 SKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVV 538 (758)
Q Consensus 504 t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~ 538 (758)
+.+ ..|.|+|.|++|.+.|+++|+.+
T Consensus 63 sg~---------~i~hLKa~s~~~f~~Wv~aL~~a 88 (89)
T PF15409_consen 63 SGD---------EIWHLKAKSQEDFQRWVSALQKA 88 (89)
T ss_pred cCC---------eEEEEEcCCHHHHHHHHHHHHhc
Confidence 875 78999999999999999999763
No 29
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.25 E-value=4.2e-12 Score=115.89 Aligned_cols=93 Identities=23% Similarity=0.296 Sum_probs=77.1
Q ss_pred cccchhhcccCCCCCcccceeeeecCCcccccccchh-----hhhccceeecCccccccccccccccCchhhhhcccCCC
Q 004370 422 ITAGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQE-----ERHFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGP 496 (758)
Q Consensus 422 i~~GwL~K~g~~~~~WkkRWFVL~~~sg~L~YyK~~~-----ek~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~ 496 (758)
+++|||.|.|.+.++|+.|||+|-++. |.|++... .-.+++.|+|.++.|.+.++ ...
T Consensus 3 ikeG~L~K~~~~~~~~k~RyffLFnd~--Ll~~~~~~~~~~~~y~~~~~i~l~~~~v~~~~~---------------~~~ 65 (101)
T cd01219 3 LKEGSVLKISSTTEKTEERYLFLFNDL--LLYCVPRKMIGGSKFKVRARIDVSGMQVCEGDN---------------LER 65 (101)
T ss_pred ccceEEEEEecCCCCceeEEEEEeCCE--EEEEEcccccCCCcEEEEEEEecccEEEEeCCC---------------CCc
Confidence 789999999999999999999998764 89998531 22457889999998875431 126
Q ss_pred ceEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHh
Q 004370 497 SLIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQ 540 (758)
Q Consensus 497 ~~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~ 540 (758)
++.|.|.++. |+|+|+|+|++|+++|+++|+.++.
T Consensus 66 ~~~F~I~~~~---------rsf~l~A~s~eEk~~W~~ai~~~i~ 100 (101)
T cd01219 66 PHSFLVSGKQ---------RCLELQARTQKEKNDWVQAIFSIID 100 (101)
T ss_pred CceEEEecCC---------cEEEEEcCCHHHHHHHHHHHHHHhh
Confidence 7899999884 9999999999999999999988875
No 30
>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain. Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.24 E-value=4.8e-12 Score=119.30 Aligned_cols=88 Identities=20% Similarity=0.384 Sum_probs=66.2
Q ss_pred CCcccceeeeecCCcccccccchhhhhccceeec-CccccccccccccccCchhhhhccc-CCCceEEEEeccCcchhhh
Q 004370 435 NGWSKRWFVLNEKTGKLGYTKKQEERHFRGVVTL-EECYIEEVVEDEDAKSSKDKKKQAE-KGPSLIFKITSKVPYKTVL 512 (758)
Q Consensus 435 ~~WkkRWFVL~~~sg~L~YyK~~~ek~~kG~I~L-~~~~v~~~~~~~~~~s~k~~~~np~-~~~~~~F~I~t~~~~k~v~ 512 (758)
..|++|||||++. .|.||+++.+..++|+|.| .++.|+....... .. ...+++ ....+.|+|.+++
T Consensus 31 ~~w~kRWFvlr~s--~L~Y~~~~~~~~~~~vil~D~~f~v~~~~~~~~--~~--~~~~~~~~~~~~~~~i~t~~------ 98 (121)
T cd01254 31 DRWQKRWFIVKES--FLAYMDDPSSAQILDVILFDVDFKVNGGGKEDI--SL--AVELKDITGLRHGLKITNSN------ 98 (121)
T ss_pred cCCcceeEEEeCC--EEEEEcCCCCCceeeEEEEcCCccEEeCCcccc--cc--cccccccCCCceEEEEEcCC------
Confidence 3799999999965 5999999999999999999 4555553221100 00 001122 2357899999986
Q ss_pred hhhhhhhhhccChHHHHHHHHhhHH
Q 004370 513 KAHSALLLKAENMAEKFEWLNKLRV 537 (758)
Q Consensus 513 k~~r~~~L~AeS~eE~~~Wv~aiRa 537 (758)
|+|.|.|+|+.++.+|+++|+.
T Consensus 99 ---R~~~l~a~s~~~~~~Wi~~i~~ 120 (121)
T cd01254 99 ---RSLKLKCKSSRKLKQWMASIED 120 (121)
T ss_pred ---cEEEEEeCCHHHHHHHHHHHHh
Confidence 9999999999999999999964
No 31
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.19 E-value=1.3e-11 Score=112.51 Aligned_cols=92 Identities=29% Similarity=0.389 Sum_probs=75.2
Q ss_pred cccchhhcccCCCCCcccceeeeecCCccccccc-chhhh---hccceeecCccccccccccccccCchhhhhcccCCCc
Q 004370 422 ITAGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTK-KQEER---HFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPS 497 (758)
Q Consensus 422 i~~GwL~K~g~~~~~WkkRWFVL~~~sg~L~YyK-~~~ek---~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~ 497 (758)
|++|||.|.+.+ +.|+|+||.+++- |.|+. ....+ .++|.|+|+++.|++++++ .+.+
T Consensus 3 ikEG~L~K~~~k-~~~~R~~FLFnD~---LlY~~~~~~~~~~y~~~~~i~L~~~~V~~~~~~--------------~~~~ 64 (99)
T cd01220 3 IRQGCLLKLSKK-GLQQRMFFLFSDL---LLYTSKSPTDQNSFRILGHLPLRGMLTEESEHE--------------WGVP 64 (99)
T ss_pred eeEEEEEEEeCC-CCceEEEEEccce---EEEEEeecCCCceEEEEEEEEcCceEEeeccCC--------------cCCc
Confidence 789999999875 5799999999976 55554 44433 4799999999999887653 1257
Q ss_pred eEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHh
Q 004370 498 LIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQ 540 (758)
Q Consensus 498 ~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~ 540 (758)
++|.|.++. ++|.|+|+|++|+++|+.+|.++|+
T Consensus 65 ~~F~I~~~~---------ks~~l~A~s~~Ek~~Wi~~i~~aI~ 98 (99)
T cd01220 65 HCFTIFGGQ---------CAITVAASTRAEKEKWLADLSKAIA 98 (99)
T ss_pred eeEEEEcCC---------eEEEEECCCHHHHHHHHHHHHHHhh
Confidence 899999885 8999999999999999999988875
No 32
>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C.
Probab=99.17 E-value=2.2e-11 Score=113.33 Aligned_cols=105 Identities=24% Similarity=0.476 Sum_probs=53.1
Q ss_pred ccchhhcccCC-CCCcccceeeeecCCcccccccchhhhhccceeecCc---cccc-cccccccccCchh-hhhccc-CC
Q 004370 423 TAGFLLKKSSK-TNGWSKRWFVLNEKTGKLGYTKKQEERHFRGVVTLEE---CYIE-EVVEDEDAKSSKD-KKKQAE-KG 495 (758)
Q Consensus 423 ~~GwL~K~g~~-~~~WkkRWFVL~~~sg~L~YyK~~~ek~~kG~I~L~~---~~v~-~~~~~~~~~s~k~-~~~np~-~~ 495 (758)
++|||.|++.+ .++||+|||||.. .|.|.|||.+.+.. .+.|..+. +... ++........... ...++. ..
T Consensus 1 k~G~l~K~~~~~~kgWk~RwFiL~k-~~~L~YyK~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (112)
T PF15413_consen 1 KEGYLYKWGNKFGKGWKKRWFILRK-DGVLSYYKIPRDKK-DVRIIGEESSRVIRKGDWSISRRSSRIQGIKDKNPFGEI 78 (112)
T ss_dssp EEEEEEE--TTS-S--EEEEEEEE--TTEEEEESS--------------TT-SB-SEEEE---GGGT-EEEES-T--SS-
T ss_pred CCceEEEecCCCCcCccccEEEEEe-CCEEEEeecccccc-cccccccchhceEeecccCcccccccccccccCCcccCc
Confidence 47999999998 8999999999995 46899999954321 11221110 0000 0000000000000 000111 23
Q ss_pred CceEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHH
Q 004370 496 PSLIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVV 538 (758)
Q Consensus 496 ~~~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~ 538 (758)
....|.|.|+. ++|+|.|+|.+|+..|+.+|+++
T Consensus 79 ~~~~~~i~T~~---------kt~~l~~~t~~d~~~Wi~aL~~~ 112 (112)
T PF15413_consen 79 HLKVFSIFTPT---------KTFHLRCETREDRYDWIEALQEA 112 (112)
T ss_dssp SSEEEEEE-SS----------EEEEEESSHHHHHHHHHHHHH-
T ss_pred CCCCcEEECCC---------cEEEEEECCHHHHHHHHHHHHhC
Confidence 45678888885 99999999999999999999753
No 33
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.16 E-value=2.2e-11 Score=111.02 Aligned_cols=80 Identities=19% Similarity=0.349 Sum_probs=61.7
Q ss_pred CCCcccceeeeecCCcccccccchhhh--hccc--eeecCccccccccccccccCchhhhhcccCCCceEEEEeccCcch
Q 004370 434 TNGWSKRWFVLNEKTGKLGYTKKQEER--HFRG--VVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPSLIFKITSKVPYK 509 (758)
Q Consensus 434 ~~~WkkRWFVL~~~sg~L~YyK~~~ek--~~kG--~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~~~F~I~t~~~~k 509 (758)
.+.|++|||||++.. |+||+++... ...+ .|+|.++.|+..++. .+++++|.|.++.
T Consensus 20 ~~~Wk~r~~vL~~~~--L~~ykd~~~~~~~~~~~~~i~l~~~~i~~~~~~--------------~k~~~~F~l~~~~--- 80 (104)
T cd01253 20 NRSWDNVYGVLCGQS--LSFYKDEKMAAENVHGEPPVDLTGAQCEVASDY--------------TKKKHVFRLRLPD--- 80 (104)
T ss_pred CCCcceEEEEEeCCE--EEEEecCcccccCCCCCCcEeccCCEEEecCCc--------------ccCceEEEEEecC---
Confidence 568999999999875 9999988644 3345 566677776543321 1367899998764
Q ss_pred hhhhhhhhhhhhccChHHHHHHHHhhHH
Q 004370 510 TVLKAHSALLLKAENMAEKFEWLNKLRV 537 (758)
Q Consensus 510 ~v~k~~r~~~L~AeS~eE~~~Wv~aiRa 537 (758)
.++|.|.|+|++++..|+.+|++
T Consensus 81 -----~~~~~f~a~s~e~~~~Wi~aL~~ 103 (104)
T cd01253 81 -----GAEFLFQAPDEEEMSSWVRALKS 103 (104)
T ss_pred -----CCEEEEECCCHHHHHHHHHHHhc
Confidence 58999999999999999999975
No 34
>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain. Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.07 E-value=1.1e-10 Score=107.01 Aligned_cols=86 Identities=16% Similarity=0.388 Sum_probs=63.5
Q ss_pred CCCCcccceeeeecCCcccccccchhhhhcccee--ecCccccccccccccccCchhhhhcccCCCceEEEEeccCcchh
Q 004370 433 KTNGWSKRWFVLNEKTGKLGYTKKQEERHFRGVV--TLEECYIEEVVEDEDAKSSKDKKKQAEKGPSLIFKITSKVPYKT 510 (758)
Q Consensus 433 ~~~~WkkRWFVL~~~sg~L~YyK~~~ek~~kG~I--~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~~~F~I~t~~~~k~ 510 (758)
..++||+|||||.+.. |+|||++++....|+| +|.+|.|..-..- ....+.|++.+|.+
T Consensus 16 ~~K~~KrrwF~lk~~~--L~YyK~kee~~~~p~i~lnl~gcev~~dv~~--------------~~~kf~I~l~~ps~--- 76 (106)
T cd01237 16 TLKGYKQYWFTFRDTS--ISYYKSKEDSNGAPIGQLNLKGCEVTPDVNV--------------AQQKFHIKLLIPTA--- 76 (106)
T ss_pred hhhhheeEEEEEeCCE--EEEEccchhcCCCCeEEEecCceEEcccccc--------------cccceEEEEecCCc---
Confidence 3567999999999765 9999999886665554 5588887522100 02457888876631
Q ss_pred hhhhhhhhhhhccChHHHHHHHHhhHHHH
Q 004370 511 VLKAHSALLLKAENMAEKFEWLNKLRVVI 539 (758)
Q Consensus 511 v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i 539 (758)
...+.|+|+|+|+++...|++++|-+.
T Consensus 77 --~~~r~y~l~cdsEeqya~Wmaa~rlas 103 (106)
T cd01237 77 --EGMNEVWLRCDNEKQYAKWMAACRLAS 103 (106)
T ss_pred --cCCeEEEEECCCHHHHHHHHHHHHHhh
Confidence 134899999999999999999998654
No 35
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=99.02 E-value=2.7e-10 Score=98.50 Aligned_cols=96 Identities=32% Similarity=0.543 Sum_probs=78.0
Q ss_pred cccchhhcccC-CCCCcccceeeeecCCcccccccchhh---hhccceeecCccccccccccccccCchhhhhcccCCCc
Q 004370 422 ITAGFLLKKSS-KTNGWSKRWFVLNEKTGKLGYTKKQEE---RHFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPS 497 (758)
Q Consensus 422 i~~GwL~K~g~-~~~~WkkRWFVL~~~sg~L~YyK~~~e---k~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~ 497 (758)
+++|||.+++. ....|++|||+|.+. .|.||+++.. ..+.+.|+|.++.+........ ....
T Consensus 2 ~~~G~l~~~~~~~~~~~~~~~~~L~~~--~l~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~~~~------------~~~~ 67 (102)
T smart00233 2 IKEGWLYKKSGGKKKSWKKRYFVLFNS--TLLYYKSEKAKKDYKPKGSIDLSGITVREAPDPDS------------AKKP 67 (102)
T ss_pred ceeEEEEEeCCCccCCceEEEEEEECC--EEEEEeCCCccccCCCceEEECCcCEEEeCCCCcc------------CCCc
Confidence 57899999876 567899999999986 5999998876 5779999999998765543210 1256
Q ss_pred eEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHH
Q 004370 498 LIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVI 539 (758)
Q Consensus 498 ~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i 539 (758)
+.|.|.++. ...|+|.|+|.+|+..|+.+|+.++
T Consensus 68 ~~f~l~~~~--------~~~~~f~~~s~~~~~~W~~~i~~~~ 101 (102)
T smart00233 68 HCFEIKTAD--------RRSYLLQAESEEEREEWVDALRKAI 101 (102)
T ss_pred eEEEEEecC--------CceEEEEcCCHHHHHHHHHHHHHhh
Confidence 899999875 2589999999999999999998765
No 36
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.91 E-value=1.1e-09 Score=93.76 Aligned_cols=91 Identities=36% Similarity=0.641 Sum_probs=74.5
Q ss_pred ccchhhcccCCC-CCcccceeeeecCCcccccccchhh---hhccceeecCccccccccccccccCchhhhhcccCCCce
Q 004370 423 TAGFLLKKSSKT-NGWSKRWFVLNEKTGKLGYTKKQEE---RHFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPSL 498 (758)
Q Consensus 423 ~~GwL~K~g~~~-~~WkkRWFVL~~~sg~L~YyK~~~e---k~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~~ 498 (758)
+.|||.+++... ..|++|||+|.+.. |.+|+.... ..+.+.|+|.++.|....... +..+
T Consensus 1 ~~G~l~~~~~~~~~~w~~~~~~L~~~~--l~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~~~--------------~~~~ 64 (96)
T cd00821 1 KEGYLLKKTGKLRKGWKRRWFVLFNDL--LLYYKKKSSKKSYKPKGSIPLSGAEVEESPDDS--------------GRKN 64 (96)
T ss_pred CcchhhhhhChhhCCccEEEEEEECCE--EEEEECCCCCcCCCCcceEEcCCCEEEECCCcC--------------CCCc
Confidence 369999887554 78999999999764 999988876 688999999998887654321 2468
Q ss_pred EEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHH
Q 004370 499 IFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRV 537 (758)
Q Consensus 499 ~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa 537 (758)
.|.|.+.. .+.|+|.|+|.+|+..|+.+|+.
T Consensus 65 ~f~i~~~~--------~~~~~~~~~s~~~~~~W~~~l~~ 95 (96)
T cd00821 65 CFEIRTPD--------GRSYLLQAESEEEREEWIEALQS 95 (96)
T ss_pred EEEEecCC--------CcEEEEEeCCHHHHHHHHHHHhc
Confidence 99999773 28999999999999999999975
No 37
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.82 E-value=4e-09 Score=99.05 Aligned_cols=83 Identities=12% Similarity=0.337 Sum_probs=65.7
Q ss_pred CCCcccceeeeecCCcccccccchhh-------hhccceeecCccccccccccccccCchhhhhcccCCCceEEEEeccC
Q 004370 434 TNGWSKRWFVLNEKTGKLGYTKKQEE-------RHFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPSLIFKITSKV 506 (758)
Q Consensus 434 ~~~WkkRWFVL~~~sg~L~YyK~~~e-------k~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~~~F~I~t~~ 506 (758)
...|+++|+||.+. .|+.|||+.. ....-.|.|.++.+....+- .++.++|+|.+++
T Consensus 23 ~R~Wk~~y~vL~g~--~L~~yKDe~~~~~~~~~~~~~~~Isi~~a~~~ia~dy--------------~Kr~~VF~L~~~~ 86 (117)
T cd01230 23 KRSWKMFYGILRGL--VLYLQKDEHKPGKSLSETELKNAISIHHALATRASDY--------------SKKPHVFRLRTAD 86 (117)
T ss_pred CCcceEEEEEEECC--EEEEEccCcccccccccccccceEEeccceeEeeccc--------------cCCCcEEEEEcCC
Confidence 35799999999987 4999999964 34567788877654432211 3478999999985
Q ss_pred cchhhhhhhhhhhhhccChHHHHHHHHhhHHHHh
Q 004370 507 PYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQ 540 (758)
Q Consensus 507 ~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~ 540 (758)
.+.|.|.|.+.+|++.|+.+|+.+..
T Consensus 87 --------g~~~lfqA~~~ee~~~Wi~~I~~~~~ 112 (117)
T cd01230 87 --------WREFLFQTSSLKELQSWIERINVVAA 112 (117)
T ss_pred --------CCEEEEECCCHHHHHHHHHHHHHHHH
Confidence 68999999999999999999977664
No 38
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=98.80 E-value=4.3e-09 Score=90.85 Aligned_cols=92 Identities=27% Similarity=0.539 Sum_probs=73.4
Q ss_pred cchhhcccCCC----CCcccceeeeecCCcccccccchhhhhcc-ceeecCccccccccccccccCchhhhhcccCCCce
Q 004370 424 AGFLLKKSSKT----NGWSKRWFVLNEKTGKLGYTKKQEERHFR-GVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPSL 498 (758)
Q Consensus 424 ~GwL~K~g~~~----~~WkkRWFVL~~~sg~L~YyK~~~ek~~k-G~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~~ 498 (758)
.|||.+.+... +.|++|||+|.+.. |.||+++.+..+. +.+++.+..|...... .+..+
T Consensus 2 ~g~l~~~~~~~~~~~~~w~~~~~~l~~~~--l~~~~~~~~~~~~~~~~~l~~~~v~~~~~~--------------~~~~~ 65 (99)
T cd00900 2 EGYLLKLGSDDVSKGKRWKRRWFFLFDDG--LLLYKSDDKKEIKPGSIPLSEISVEEDPDG--------------SDDPN 65 (99)
T ss_pred ccEEEEeCCCccccccCceeeEEEEECCE--EEEEEcCCCCcCCCCEEEccceEEEECCCC--------------CCCCc
Confidence 58888886553 78999999999764 9999999988887 8999988776544321 12568
Q ss_pred EEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHH
Q 004370 499 IFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRV 537 (758)
Q Consensus 499 ~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa 537 (758)
+|.|.+..+ ..+.++|.|+|.+|+..|+.+|+.
T Consensus 66 ~F~i~~~~~------~~~~~~~~~~~~~~~~~W~~al~~ 98 (99)
T cd00900 66 CFAIVTKDR------GRRVFVFQADSEEEAQEWVEALQQ 98 (99)
T ss_pred eEEEECCCC------CcEEEEEEcCCHHHHHHHHHHHhc
Confidence 999998731 358999999999999999999964
No 39
>COG0699 Predicted GTPases (dynamin-related) [General function prediction only]
Probab=98.69 E-value=1.4e-07 Score=108.46 Aligned_cols=290 Identities=14% Similarity=0.142 Sum_probs=220.2
Q ss_pred HHHHHHhcCCCCeEEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCCcchhHHHHHHHHHcCCCCCCCCC
Q 004370 3 DAMISKYVERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAEGDSKALAAVRALLLNQGPPKTSD 82 (758)
Q Consensus 3 ~~mV~~YI~~~ntIILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd~gt~~~~~~~~iL~nk~pl~~~~ 82 (758)
..|...|+..++++|+..+.++. |.++..+.+.+++.++ |+||.++|+.+++... + +.
T Consensus 80 ~~~~~~~~~~~~~li~~~~~~~~--~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~----~------~~--- 137 (546)
T COG0699 80 ELLDLGKIEIENALILLGIAPNA--DEEAELSIEVIREADR-------VPTKINFLNGGTNLTL----I------LG--- 137 (546)
T ss_pred HHHHhhHHHHHHHHHhcchhhhh--hhccchhhHhhhhhcc-------hhHHHHHHhcCCceee----e------ec---
Confidence 36778899999999999999997 9999999999999998 9999999998886410 0 22
Q ss_pred CCEEEEEcCCcccccccccCcccCCCHHHHHHHHHHHHhhcC-CCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004370 83 IPWVAVIGQSVAISSVTSSGAAADSSLEAAWRAEVETLKRLL-SGAPQNKLGRVALVDTIAGQIRNRMSLRVPKLLSGLQ 161 (758)
Q Consensus 83 lGy~~V~nRs~~~~~~Q~d~i~~~~s~~~a~~~E~~FF~s~~-~~~~~~r~G~~~L~~~Ls~~L~~hI~~~LP~l~~~I~ 161 (758)
.|++.++|.. +.+ +....+...+...|.++|..++ +......++++++...+++.+..|++...|.......
T Consensus 138 ~~~~~~~~~~------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (546)
T COG0699 138 NGDVLVVDAL------ETD-IQLLKTALEALVKELEYFAEHPLLEDNEKLVLLPYLKKLLSKILELHLRLLPKYDKLQDV 210 (546)
T ss_pred cccccccCch------hHH-HHhcccchHHHHHHHHHhhcCccccccccccCChhhhhhhhhhHHHHHHhcChhhhhHhh
Confidence 5777777887 545 7778888888899999999998 5555678999999999999999999999998777666
Q ss_pred HhHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHhcchhhhhccCCCCcccChhhHH
Q 004370 162 GKSQIVQDELLKLGDQILENTEGTKALALQLCREFEDKFLQHITGGEGNGWKVVASFEGNFPNRMKQLPLDRHFDMKNVK 241 (758)
Q Consensus 162 ~~l~~~e~eL~~LG~~~~~~~e~~~~~ll~li~~F~~~f~~~I~G~~~gGarI~~if~e~F~~~i~~lp~~~~~~~~~Vr 241 (758)
..... .+++. .++.....|...+..... |.++... ...|. ++++.. ...+.
T Consensus 211 ~~~~~------~~~~~----------~~~~~~~~~~~~~~~~~~-----~~~~~~~-~~~~~------~l~~~~-~~~~~ 261 (546)
T COG0699 211 IQLSQ------DLFEN----------EVLAVIQTLLKRLSELVR-----GARIRLN-IILFS------DLEEVS-DSPVL 261 (546)
T ss_pred hcccc------cccch----------HHHHHHHHHHHHHHHHhc-----cchhhhh-hcccc------hHHHhh-hhhhH
Confidence 65543 22221 346666667666663333 3344333 00111 111111 13455
Q ss_pred HHHHhhcCCCCCCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcchHHHHHHHHHHHHHH
Q 004370 242 RVVLEADGYQPYLISPEKGLRSLIKSVLEMAKEPSRLCVDEVHRVLVDIVSAAANATPGLGRYPPFKREVVEIASAALDR 321 (758)
Q Consensus 242 ~~I~~~~G~~~~lf~P~~afe~Lik~qi~~~~~Pa~~cvd~V~~~L~~iv~~~~~~t~~l~rfP~L~~~i~~iv~~~L~~ 321 (758)
....+..|.++-.|....++..++..++..+..+...|+..+...+..+...... ......||.+...+...+.+....
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 340 (546)
T COG0699 262 LKELASKGERPSLLSGLTLLDTLVETPIGQFDTQINQLLRKLISELVRILLKELE-SASSSPFPKLSEALEEVVNQLKNK 340 (546)
T ss_pred HHHHcccCCCccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-ccccccchhhHHHHHHHHHHHHHH
Confidence 5566667777778899999999999999999999988888888888887555443 356789999999999999998899
Q ss_pred HHHHHHHHHHHHHHHhcCCCCchh--hHHHHH
Q 004370 322 FKSDAKKMVVALVDMERVFVPPQH--FIRLVQ 351 (758)
Q Consensus 322 ~~~~a~~~v~~Lid~E~~yi~tnh--F~~~~q 351 (758)
........+...++.+..|+++.| |....+
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (546)
T COG0699 341 VDSGLESGLLAIIDIEERYINTKHPLFLSLRQ 372 (546)
T ss_pred hhhhHHHHHHHHHHHHHHHHhhcCcchHHHHH
Confidence 999999999999999999999777 555444
No 40
>KOG1090 consensus Predicted dual-specificity phosphatase [General function prediction only]
Probab=98.69 E-value=1.1e-08 Score=119.66 Aligned_cols=97 Identities=23% Similarity=0.431 Sum_probs=78.8
Q ss_pred cccchhhcccCCCCCcccceeeeecCCcccccccchhhhhccceeecCccccccccccccccCchhhhhcccCCCceEEE
Q 004370 422 ITAGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQEERHFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPSLIFK 501 (758)
Q Consensus 422 i~~GwL~K~g~~~~~WkkRWFVL~~~sg~L~YyK~~~ek~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~~~F~ 501 (758)
+.+|||+|+|.+.+.|+.|||||...+-+|+||.+-++.+++|+|.|-+..--.. .++ + .-+.+-.|.
T Consensus 1635 ~~eG~LyKrGA~lK~Wk~RwFVLd~~khqlrYYd~~edt~pkG~IdLaevesv~~--~~~-k---------~vdekgffd 1702 (1732)
T KOG1090|consen 1635 IPEGYLYKRGAKLKLWKPRWFVLDPDKHQLRYYDDFEDTKPKGCIDLAEVESVAL--IGP-K---------TVDEKGFFD 1702 (1732)
T ss_pred CcccchhhcchhhcccccceeEecCCccceeeecccccccccchhhhhhhhhhcc--cCc-c---------ccCccceee
Confidence 7799999999999999999999998888999999999999999999966432111 110 0 012345678
Q ss_pred EeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHH
Q 004370 502 ITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVI 539 (758)
Q Consensus 502 I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i 539 (758)
+.++. |.|-|.|.+.-...+|+..|.+|+
T Consensus 1703 lktt~---------rvynf~a~nin~AqqWve~iqscl 1731 (1732)
T KOG1090|consen 1703 LKTTN---------RVYNFCAQNINLAQQWVECIQSCL 1731 (1732)
T ss_pred eehhh---------HHHHHHhccchHHHHHHHHHHHhh
Confidence 87764 899999999999999999999886
No 41
>cd01234 PH_CADPS CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS is a calcium-dependent activator involved in secretion. It contains a central PH domain that binds to phosphoinositide 4,5 bisphosphate containing liposomes. However, membrane association may also be mediated by binding to phosphatidlyserine via general electrostatic interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.47 E-value=5.5e-08 Score=88.17 Aligned_cols=95 Identities=18% Similarity=0.369 Sum_probs=67.2
Q ss_pred cccchhhcccC-CCCCcccceeeeecCCcccccccc------hhhhhccceeecCccccccccccccccCchhhhhccc-
Q 004370 422 ITAGFLLKKSS-KTNGWSKRWFVLNEKTGKLGYTKK------QEERHFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAE- 493 (758)
Q Consensus 422 i~~GwL~K~g~-~~~~WkkRWFVL~~~sg~L~YyK~------~~ek~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~- 493 (758)
.+.|||.|.|+ ..+.||||||||..-+ -|-. +....|.-+|.|+|++|.-.++.. .||.
T Consensus 3 k~sGyL~k~Gg~~~KkWKKRwFvL~qvs----QYtfamcsy~ekks~P~e~~qldGyTvDy~~~~~---------~~~~~ 69 (117)
T cd01234 3 KHCGYLYAIGKNVWKKWKKRFFVLVQVS----QYTFAMCSYREKKAEPTEFIQLDGYTVDYMPESD---------PDPNS 69 (117)
T ss_pred ceeEEEEeccchhhhhhheeEEEEEchh----HHHHHHHhhhhhcCCchhheeecceEEeccCCCC---------CCccc
Confidence 47899999988 7899999999999643 3322 223467789999999986444321 0111
Q ss_pred ----CCCceEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhh-HHH
Q 004370 494 ----KGPSLIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKL-RVV 538 (758)
Q Consensus 494 ----~~~~~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~ai-Ra~ 538 (758)
.+..+-|+.. |...++.|+++++-|+.-||.++ ||.
T Consensus 70 ~~~~~gg~~ff~av---------kegd~~~fa~~de~~r~lwvqa~yrat 110 (117)
T cd01234 70 ELSLQGGRHFFNAV---------KEGDELKFATDDENERHLWVQAMYRAT 110 (117)
T ss_pred ccccccchhhhhee---------ccCcEEEEeccchHHHHHHHHHHHHHc
Confidence 2334445443 34578999999999999999999 663
No 42
>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A.
Probab=98.30 E-value=4.6e-07 Score=85.30 Aligned_cols=81 Identities=17% Similarity=0.331 Sum_probs=53.7
Q ss_pred CCCCcccceeeeecCCcccccccchhhh--------------hccceeecCccccccccccccccCchhhhhcccCCCce
Q 004370 433 KTNGWSKRWFVLNEKTGKLGYTKKQEER--------------HFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPSL 498 (758)
Q Consensus 433 ~~~~WkkRWFVL~~~sg~L~YyK~~~ek--------------~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~~ 498 (758)
....|+..|+||++.. |+.||+.... .+.+.|.|.++.+....+ . .++++
T Consensus 22 ~~R~Wk~~y~vL~g~~--L~~~k~~~~~~~~~~~~~~~~~~~~p~~~i~L~~a~a~~a~d-Y-------------~Kr~~ 85 (119)
T PF15410_consen 22 SKRSWKQVYAVLQGGQ--LYFYKDEKSPASSTPPDIQSVENAKPDSSISLHHALAEIASD-Y-------------TKRKN 85 (119)
T ss_dssp S---EEEEEEEEETTE--EEEESSHHHHCCT-BS---SS--E-----EE-TT-EEEEETT-B-------------TTCSS
T ss_pred CCCCccEEeEEEECCE--EEEEccCcccccCCcccccccccCcceeEEEecceEEEeCcc-c-------------ccCCe
Confidence 3458999999999864 9999996431 234568887776654221 1 24789
Q ss_pred EEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHH
Q 004370 499 IFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRV 537 (758)
Q Consensus 499 ~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa 537 (758)
+|.|.+++ ...|.|.|.|.+||.+||.+|.-
T Consensus 86 VFrL~~~d--------g~e~Lfqa~~~~~m~~Wi~~IN~ 116 (119)
T PF15410_consen 86 VFRLRTAD--------GSEYLFQASDEEEMNEWIDAINY 116 (119)
T ss_dssp EEEEE-TT--------S-EEEEE-SSHHHHHHHHHHHHH
T ss_pred EEEEEeCC--------CCEEEEECCCHHHHHHHHHHHhh
Confidence 99999885 68999999999999999999943
No 43
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.24 E-value=1.1e-06 Score=81.16 Aligned_cols=93 Identities=19% Similarity=0.253 Sum_probs=72.9
Q ss_pred cccchhhcccCCCCCcccceeeeecCCcccccccch-hh--hhccceeecCccccccccccccccCchhhhhcccCCCce
Q 004370 422 ITAGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQ-EE--RHFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPSL 498 (758)
Q Consensus 422 i~~GwL~K~g~~~~~WkkRWFVL~~~sg~L~YyK~~-~e--k~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~~ 498 (758)
+++|-|.|.. .++-+.|||.|=.+- |.|=+-- .. -...+.|+|+++.|+++.++. ...+
T Consensus 5 i~eG~L~K~~--rk~~~~R~ffLFnD~--LvY~~~~~~~~~~~~~~~i~L~~~~v~~~~d~~--------------~~~n 66 (104)
T cd01218 5 VGEGVLTKMC--RKKPKQRQFFLFNDI--LVYGNIVISKKKYNKQHILPLEGVQVESIEDDG--------------IERN 66 (104)
T ss_pred EecCcEEEee--cCCCceEEEEEecCE--EEEEEeecCCceeeEeeEEEccceEEEecCCcc--------------cccc
Confidence 7889999987 445778999997774 8884321 11 234689999999998876542 2468
Q ss_pred EEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHhh
Q 004370 499 IFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 499 ~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~~ 541 (758)
.|.|.++. ++|++.|+|.+|+.+|+.+|..++..
T Consensus 67 ~f~I~~~~---------kSf~v~A~s~~eK~eWl~~i~~ai~~ 100 (104)
T cd01218 67 GWIIKTPT---------KSFAVYAATETEKREWMLHINKCVTD 100 (104)
T ss_pred eEEEecCC---------eEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 99999985 89999999999999999999887764
No 44
>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.05 E-value=4e-06 Score=77.39 Aligned_cols=100 Identities=22% Similarity=0.411 Sum_probs=70.4
Q ss_pred ccchhhcc--cCC--CCCcccceeeeecCCcccccccchhhhh---ccceeecC-ccccccccccccccCchhhhhccc-
Q 004370 423 TAGFLLKK--SSK--TNGWSKRWFVLNEKTGKLGYTKKQEERH---FRGVVTLE-ECYIEEVVEDEDAKSSKDKKKQAE- 493 (758)
Q Consensus 423 ~~GwL~K~--g~~--~~~WkkRWFVL~~~sg~L~YyK~~~ek~---~kG~I~L~-~~~v~~~~~~~~~~s~k~~~~np~- 493 (758)
.+|||.-- ++. +.+|+++|.||.+. +|+.|..+.++. +--+|.|+ .+.|..+-.+. ..|.+
T Consensus 2 lEGwlsvP~~~~~~~k~gW~r~yvVv~~~--Kl~lYd~e~~~~~~~p~~vldl~~~fhv~~V~asD--------Vi~a~~ 71 (112)
T cd01242 2 MEGWLSLPNRTNKSRKPGWKKQYVVVSSR--KILFYNDEQDKENSTPSMILDIDKLFHVRPVTQGD--------VYRADA 71 (112)
T ss_pred cceeEEccCCCCccccCCceEEEEEEeCC--EEEEEecCccccCCCcEEEEEccceeeeecccHHH--------eeecCc
Confidence 47999533 444 46899999999976 599999877653 45566663 33444443322 11212
Q ss_pred CCCceEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHH
Q 004370 494 KGPSLIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVI 539 (758)
Q Consensus 494 ~~~~~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i 539 (758)
+.-+++|+|.... ..++++|-|+|+.|+..|+.+|+.-|
T Consensus 72 kDiP~IF~I~~~~-------~~~~lllLA~s~~ek~kWV~~L~~~~ 110 (112)
T cd01242 72 KEIPKIFQILYAN-------EARDLLLLAPQTDEQNKWVSRLVKKI 110 (112)
T ss_pred ccCCeEEEEEeCC-------ccceEEEEeCCchHHHHHHHHHHHhc
Confidence 3478999999764 25899999999999999999997654
No 45
>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.97 E-value=6.6e-06 Score=76.15 Aligned_cols=104 Identities=22% Similarity=0.292 Sum_probs=70.9
Q ss_pred ccchhhcccCCCCCcccceeeeecCCcccccccchhhhhcc---ceeecCccccccccccccccCchhhhhc-ccCCCce
Q 004370 423 TAGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQEERHFR---GVVTLEECYIEEVVEDEDAKSSKDKKKQ-AEKGPSL 498 (758)
Q Consensus 423 ~~GwL~K~g~~~~~WkkRWFVL~~~sg~L~YyK~~~ek~~k---G~I~L~~~~v~~~~~~~~~~s~k~~~~n-p~~~~~~ 498 (758)
.+|||+-+...++.|||+||||.... |+|+-...-++++ ....+++++|=.+-.. + ++.. | ..+
T Consensus 2 ~~g~LylK~~gkKsWKk~~f~LR~SG--LYy~~Kgksk~srdL~cl~~f~~~nvY~~~~~------k-Kk~kAP---Td~ 69 (114)
T cd01259 2 MEGPLYLKADGKKSWKKYYFVLRSSG--LYYFPKEKTKNTRDLACLNLLHGHNVYTGLGW------R-KKYKSP---TDY 69 (114)
T ss_pred ccceEEEccCCCccceEEEEEEeCCe--eEEccCCCcCCHHHHHHHHhcccCcEEEEech------h-hccCCC---CCc
Confidence 46999988777788999999999987 8888766655544 5566677665332211 1 1121 3 467
Q ss_pred EEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHh
Q 004370 499 IFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQ 540 (758)
Q Consensus 499 ~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~ 540 (758)
.|.|.++... + .....--.|+||+++.+..|+++||-+-+
T Consensus 70 ~F~~K~~~~q-~-~~s~~ik~lCaeDe~t~~~W~ta~Ri~Ky 109 (114)
T cd01259 70 CFGFKAVGDQ-S-KGSQSIKYLCAEDLPTLDRWLTAIRIAKY 109 (114)
T ss_pred eEEEeccccC-c-ccchhheeeccCCHHHHHHHHHHHHHHhh
Confidence 8888776421 1 01234568999999999999999987655
No 46
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=97.96 E-value=1.9e-05 Score=91.52 Aligned_cols=95 Identities=23% Similarity=0.350 Sum_probs=73.1
Q ss_pred cccchhhcc---c---CCCCCcccceeeeecCCcccccccchhhhhccceeecCccc-cccccccccccCchhhhhcccC
Q 004370 422 ITAGFLLKK---S---SKTNGWSKRWFVLNEKTGKLGYTKKQEERHFRGVVTLEECY-IEEVVEDEDAKSSKDKKKQAEK 494 (758)
Q Consensus 422 i~~GwL~K~---g---~~~~~WkkRWFVL~~~sg~L~YyK~~~ek~~kG~I~L~~~~-v~~~~~~~~~~s~k~~~~np~~ 494 (758)
+++|+|.++ | .+...+|||||-|+.+. |.|-|++. ..+.+.|||.++. |+.+++.. -
T Consensus 565 v~k~glm~kr~~gr~~~~~~~FKKryf~LT~~~--Ls~~Ksp~-~q~~~~Ipl~nI~avEklee~s-------------F 628 (800)
T KOG2059|consen 565 VLKEGLMIKRAQGRGRFGKKNFKKRYFRLTTEE--LSYAKSPG-KQPIYTIPLSNIRAVEKLEEKS-------------F 628 (800)
T ss_pred eecccceEeccccccchhhhhhhheEEEeccce--eEEecCCc-cCcccceeHHHHHHHHHhhhhc-------------c
Confidence 555555444 2 12467999999999886 99999986 4688999998876 45555431 1
Q ss_pred CCceEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHhh
Q 004370 495 GPSLIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 495 ~~~~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~~ 541 (758)
+.+++|+|.+++ |+++|.|.+..|...|+.+|+.+...
T Consensus 629 ~~knv~qVV~~d---------rtly~Q~~n~vEandWldaL~kvs~~ 666 (800)
T KOG2059|consen 629 KMKNVFQVVHTD---------RTLYVQAKNCVEANDWLDALRKVSCC 666 (800)
T ss_pred CCCceEEEEecC---------cceeEecCCchHHHHHHHHHHHHhcc
Confidence 368899999986 89999999999999999999665443
No 47
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=97.90 E-value=6.8e-06 Score=75.82 Aligned_cols=86 Identities=16% Similarity=0.305 Sum_probs=61.0
Q ss_pred cccchhhcccCCCCCcccceeeeecCCcccccccchhhhhccceeecCc-cccccccccccccCchhhhhcccCCCceEE
Q 004370 422 ITAGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQEERHFRGVVTLEE-CYIEEVVEDEDAKSSKDKKKQAEKGPSLIF 500 (758)
Q Consensus 422 i~~GwL~K~g~~~~~WkkRWFVL~~~sg~L~YyK~~~ek~~kG~I~L~~-~~v~~~~~~~~~~s~k~~~~np~~~~~~~F 500 (758)
++.|++.|+.+.. +|+|||+|++.. +|+|+... ....+|.|++.. ++++.. ..-.|
T Consensus 14 l~~g~v~K~kgl~--~kkR~liLTd~P-rL~Yvdp~-~~~~KGeI~~~~~l~v~~k-------------------~~~~F 70 (104)
T PF14593_consen 14 LKQGYVKKRKGLF--AKKRQLILTDGP-RLFYVDPK-KMVLKGEIPWSKELSVEVK-------------------SFKTF 70 (104)
T ss_dssp EEEEEEEEEETTE--EEEEEEEEETTT-EEEEEETT-TTEEEEEE--STT-EEEEC-------------------SSSEE
T ss_pred EEEEEEEEeeceE--EEEEEEEEccCC-EEEEEECC-CCeECcEEecCCceEEEEc-------------------cCCEE
Confidence 8999999997665 999999999763 67776544 557789999964 344421 23479
Q ss_pred EEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHh
Q 004370 501 KITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQ 540 (758)
Q Consensus 501 ~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~ 540 (758)
.|.+|. |+|+|...+ .+...|+.+|..+..
T Consensus 71 ~I~tp~---------RtY~l~d~~-~~A~~W~~~I~~~~~ 100 (104)
T PF14593_consen 71 FIHTPK---------RTYYLEDPE-GNAQQWVEAIEEVKK 100 (104)
T ss_dssp EEEETT---------EEEEEE-TT-S-HHHHHHHHHHHHH
T ss_pred EEECCC---------cEEEEECCC-CCHHHHHHHHHHHHH
Confidence 999985 999988744 446789999977654
No 48
>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=97.87 E-value=1.1e-05 Score=86.94 Aligned_cols=103 Identities=22% Similarity=0.426 Sum_probs=70.8
Q ss_pred cccchhhcccCCCCCcccceeeeecCCcccccccchhhhhccceeecCccccccccccccccCchhhhhcccCCCceEEE
Q 004370 422 ITAGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQEERHFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPSLIFK 501 (758)
Q Consensus 422 i~~GwL~K~g~~~~~WkkRWFVL~~~sg~L~YyK~~~ek~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~~~F~ 501 (758)
+++|||+|+|-..++|+.|+|+|..+...|.|=..|.+..+. --||.+..|.+..-- - -+..+++.|-
T Consensus 16 vkEgWlhKrGE~IknWRpRYF~l~~DG~~~Gyr~kP~~~~~~-p~pLNnF~v~~cq~m----~-------~erPrPntFi 83 (516)
T KOG0690|consen 16 VKEGWLHKRGEHIKNWRPRYFLLFNDGTLLGYRSKPKEVQPT-PEPLNNFMVRDCQTM----K-------TERPRPNTFI 83 (516)
T ss_pred HHhhhHhhcchhhhcccceEEEEeeCCceEeeccCCccCCCC-cccccchhhhhhhhh----h-------ccCCCCceEE
Confidence 899999999999999999999999875445555555544332 256777766644311 0 0123677888
Q ss_pred EeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHhh
Q 004370 502 ITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 502 I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~~ 541 (758)
|.+-. ..+|. .|+ |.++|.+++++|+.+|+++...
T Consensus 84 iRcLQ-WTTVI--ERT--F~ves~~eRq~W~~AIq~vsn~ 118 (516)
T KOG0690|consen 84 IRCLQ-WTTVI--ERT--FYVESAEERQEWIEAIQAVSNR 118 (516)
T ss_pred EEeee-eeeee--eee--eecCCHHHHHHHHHHHHHHhhh
Confidence 87642 22222 243 5699999999999999998764
No 49
>KOG3640 consensus Actin binding protein Anillin [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.84 E-value=9.4e-06 Score=96.13 Aligned_cols=104 Identities=20% Similarity=0.393 Sum_probs=72.4
Q ss_pred cchhhcc--cCCCCCcccceeeeecCCcccccccchhh---hhccceeecCccccccccccccccCchhhhhccc-CCCc
Q 004370 424 AGFLLKK--SSKTNGWSKRWFVLNEKTGKLGYTKKQEE---RHFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAE-KGPS 497 (758)
Q Consensus 424 ~GwL~K~--g~~~~~WkkRWFVL~~~sg~L~YyK~~~e---k~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~-~~~~ 497 (758)
.|||+.. +..++.|.||||+|.+. .+.|+|.|.| +.|.|.|+|..|+-..++..- -+ +.+.
T Consensus 993 rGFLtmfed~sgfGaWhRyWc~L~gg--~I~fWk~PdDEkrK~Pig~IDLt~CTsq~ie~a~-----------rdicar~ 1059 (1116)
T KOG3640|consen 993 RGFLTMFEDGSGFGAWHRYWCALHGG--EIKFWKYPDDEKRKVPIGQIDLTKCTSQSIEEAR-----------RDICARP 1059 (1116)
T ss_pred eeeeeeeeccCCCchhhhhhHHhcCC--eeeeecCcchhcccCcceeeehhhhhccccccch-----------hhhccCC
Confidence 5898766 56678899999999975 5999997765 567899999999866555321 01 3356
Q ss_pred eEEEEeccCc----chhhhhhhh-hhhhhccChHHHHHHHHhhHHHHh
Q 004370 498 LIFKITSKVP----YKTVLKAHS-ALLLKAENMAEKFEWLNKLRVVIQ 540 (758)
Q Consensus 498 ~~F~I~t~~~----~k~v~k~~r-~~~L~AeS~eE~~~Wv~aiRa~i~ 540 (758)
+.|.|.+--| .-..+-..| .+.|+|+|.+|++.|+.+|-....
T Consensus 1060 ntFhie~~rPl~~Dqep~~ie~r~Rv~LaADTkeel~~Wls~iN~tL~ 1107 (1116)
T KOG3640|consen 1060 NTFHIEVWRPLEDDQEPLLIEKRLRVMLAADTKEELQSWLSAINDTLK 1107 (1116)
T ss_pred ceeEEEeecccccccCcchhhhcceeeeecccHHHHHHHHHHHHHHHH
Confidence 7777773221 001111123 678999999999999999955443
No 50
>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.82 E-value=1.5e-05 Score=74.65 Aligned_cols=103 Identities=23% Similarity=0.374 Sum_probs=70.6
Q ss_pred cccchhh--cccCCCCCcccceeeeecCCcccccccchhhhh------ccceeec--CccccccccccccccCchhhhhc
Q 004370 422 ITAGFLL--KKSSKTNGWSKRWFVLNEKTGKLGYTKKQEERH------FRGVVTL--EECYIEEVVEDEDAKSSKDKKKQ 491 (758)
Q Consensus 422 i~~GwL~--K~g~~~~~WkkRWFVL~~~sg~L~YyK~~~ek~------~kG~I~L--~~~~v~~~~~~~~~~s~k~~~~n 491 (758)
..+|||. +.++.+++|+++|.||.+. +|+.|..+.++. +.-+|.| ..+.|..+-.+.. .|
T Consensus 3 ~~EGwvkvP~~~~~krGW~r~~vVv~~~--Kl~lYd~e~~k~~~p~~~~~~vLdlrD~~fsV~~VtasDv--------i~ 72 (122)
T cd01243 3 AYEGHVKIPKPGGVKKGWQRALVVVCDF--KLFLYDIAEDRASQPSVVISQVLDMRDPEFSVSSVLESDV--------IH 72 (122)
T ss_pred cceeeEeccCCCCcccCceEEEEEEeCC--EEEEEeCCccccCCccCceeEEEEcCCCCEEEEEecHHHc--------cc
Confidence 5689995 4456667999999999976 599999777652 3345666 3455655543321 12
Q ss_pred cc-CCCceEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhH
Q 004370 492 AE-KGPSLIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLR 536 (758)
Q Consensus 492 p~-~~~~~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiR 536 (758)
.+ +.-+++|+|++.. . ..-....+++|-|+|+.|+..|+.+|.
T Consensus 73 a~~kDiP~If~I~~~~-~-~~~~~~~~~~~lA~s~~eK~kWV~aL~ 116 (122)
T cd01243 73 ASKKDIPCIFRVTTSQ-I-SASSSKCSTLMLADTEEEKSKWVGALS 116 (122)
T ss_pred cCcccCCeEEEEEEec-c-cCCCCccEEEEEeCCchHHHHHHHHHH
Confidence 11 3478999999752 1 111234788999999999999999984
No 51
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=97.79 E-value=0.00025 Score=85.83 Aligned_cols=97 Identities=27% Similarity=0.561 Sum_probs=79.8
Q ss_pred CccccchhhcccCC-CCCcccceeeeecCCcccccccchhhhhccceeecCccccccccccccccCchhhhhcccCCCce
Q 004370 420 GEITAGFLLKKSSK-TNGWSKRWFVLNEKTGKLGYTKKQEERHFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPSL 498 (758)
Q Consensus 420 ~~i~~GwL~K~g~~-~~~WkkRWFVL~~~sg~L~YyK~~~ek~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~~ 498 (758)
+-...|||.|+.+. ...|.||||-..+. .|.|++.-.......+++|..|.|..++.. ....+
T Consensus 273 ~~~~~~~l~~k~~~~~~tw~r~~f~~q~~--~l~~~~r~~~~~~~~~~dL~~csvk~~~~~--------------~drr~ 336 (785)
T KOG0521|consen 273 GYRMEGYLRKKASNASKTWKRRWFSIQDG--QLGYQHRGADAENVLIEDLRTCSVKPDAEQ--------------RDRRF 336 (785)
T ss_pred hhhhhhhhhhhcccchhhHHhhhhhhhcc--ccccccccccccccccccchhccccCCccc--------------cccee
Confidence 33677899988544 88999999999854 499998888777778888899998866543 12689
Q ss_pred EEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHhh
Q 004370 499 IFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 499 ~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~~ 541 (758)
+|.|.++. ++|.|.|+|..+...|+.+|++.+.+
T Consensus 337 CF~iiS~t---------ks~~lQAes~~d~~~Wi~~i~nsi~s 370 (785)
T KOG0521|consen 337 CFEIISPT---------KSYLLQAESEKDCQDWISALQNSILS 370 (785)
T ss_pred eEEEecCC---------cceEEecCchhHHHHHHHHHHHHHHH
Confidence 99999975 99999999999999999999887765
No 52
>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.59 E-value=7e-05 Score=68.91 Aligned_cols=91 Identities=13% Similarity=0.315 Sum_probs=60.3
Q ss_pred ccchhhccc--CCCCCcccceeeeecCCcccc---cccc-----hhhhhccceeecCccccccccccccccCchhhhhcc
Q 004370 423 TAGFLLKKS--SKTNGWSKRWFVLNEKTGKLG---YTKK-----QEERHFRGVVTLEECYIEEVVEDEDAKSSKDKKKQA 492 (758)
Q Consensus 423 ~~GwL~K~g--~~~~~WkkRWFVL~~~sg~L~---YyK~-----~~ek~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np 492 (758)
++|||+.+. +....|-+.||.....++.+. +... .....---.|.|..|.++..+..
T Consensus 1 k~GYLy~~~k~~~~~~Wvk~y~~~~~~~~~f~m~~~~q~s~~~~~g~v~~~e~~~l~sc~~r~~~~~------------- 67 (104)
T cd01249 1 KEGYLYMQEKSKFGGSWTKYYCTYSKETRIFTMVPFNQKTKTDMKGAVAQDETLTLKSCSRRKTESI------------- 67 (104)
T ss_pred CCceEEEEcCCCCCCeEEEEEEEEEcCCcEEEEEecccccccccCcccccceEEeeeeccccccCCc-------------
Confidence 479998774 234579999999887654432 2221 11111112355566766654432
Q ss_pred cCCCceEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhh
Q 004370 493 EKGPSLIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKL 535 (758)
Q Consensus 493 ~~~~~~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~ai 535 (758)
.+.++|.|.+++ .+.++.|.|+|+.++..|+.++
T Consensus 68 --dRRFCFei~~~~-------~~~~~~lQA~Se~~~~~Wi~A~ 101 (104)
T cd01249 68 --DKRFCFDVEVEE-------KPGVITMQALSEKDRRLWIEAM 101 (104)
T ss_pred --cceeeEeeeecC-------CCCeEEEEecCHHHHHHHHHhh
Confidence 378999998885 1347999999999999999987
No 53
>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain. Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.57 E-value=6.8e-05 Score=70.13 Aligned_cols=95 Identities=18% Similarity=0.235 Sum_probs=73.4
Q ss_pred cccchhhcccCCCCCcccceeeeecCCcccccccchhh-----------hhccceeecCccccccccccccccCchhhhh
Q 004370 422 ITAGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQEE-----------RHFRGVVTLEECYIEEVVEDEDAKSSKDKKK 490 (758)
Q Consensus 422 i~~GwL~K~g~~~~~WkkRWFVL~~~sg~L~YyK~~~e-----------k~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~ 490 (758)
|++|=|.|-+...+.++.|.|-|=++. |.|=|.... -..++.|+|+.+.|.+.+++.
T Consensus 5 I~EG~L~ki~~~~~~~q~R~~FLFd~~--Li~CK~~~~~~~~~g~~~~~y~~k~~~~l~~~~V~d~~d~~---------- 72 (112)
T cd01261 5 IMEGTLTRVGPSKKAKHERHVFLFDGL--MVLCKSNHGQPRLPGASSAEYRLKEKFFMRKVDINDKPDSS---------- 72 (112)
T ss_pred cccCcEEEEecccCCcceEEEEEecCe--EEEEEeccCcccccccccceEEEEEEEeeeeeEEEEcCCCc----------
Confidence 788999988877778888988886653 777664332 234677999999888766542
Q ss_pred cccCCCceEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHh
Q 004370 491 QAEKGPSLIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQ 540 (758)
Q Consensus 491 np~~~~~~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~ 540 (758)
..++.|.|.+.+ .+.|+|.|.|++|+.+|+++|-.+++
T Consensus 73 ----~~knaF~I~~~~--------~~s~~l~Akt~eeK~~Wm~~l~~~~~ 110 (112)
T cd01261 73 ----EYKNAFEIILKD--------GNSVIFSAKNAEEKNNWMAALISVQT 110 (112)
T ss_pred ----ccCceEEEEcCC--------CCEEEEEECCHHHHHHHHHHHHHHhc
Confidence 247899999863 47899999999999999999977765
No 54
>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.35 E-value=0.00014 Score=67.88 Aligned_cols=73 Identities=16% Similarity=0.350 Sum_probs=56.1
Q ss_pred cccchhhcccCCCCCcccceeeeecCCcccccccchhhhhccceeecCcc-ccccccccccccCchhhhhcccCCCceEE
Q 004370 422 ITAGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQEERHFRGVVTLEEC-YIEEVVEDEDAKSSKDKKKQAEKGPSLIF 500 (758)
Q Consensus 422 i~~GwL~K~g~~~~~WkkRWFVL~~~sg~L~YyK~~~ek~~kG~I~L~~~-~v~~~~~~~~~~s~k~~~~np~~~~~~~F 500 (758)
+++|||.-...+-+.|||++|+|+.++ |.+|+++...++--.|||.++ .|+.. .+.+ .+.+...|+|
T Consensus 1 lkEGWmVHyT~~d~~rKRhYWrLDsK~--Itlf~~e~~skyyKeIPLsEIl~V~~~-~~~~---------~~~~~~~hcF 68 (117)
T cd01239 1 LKEGWMVHYTSSDNRRKKHYWRLDSKA--ITLYQEESGSRYYKEIPLAEILSVSSN-NGDS---------VLAKHPPHCF 68 (117)
T ss_pred CccceEEEEecCccceeeeEEEecCCe--EEEEEcCCCCeeeEEeehHHheEEecc-CCCc---------CCCCCCCcEE
Confidence 478999888777788999999999886 999999999999999999654 44421 1110 1224578999
Q ss_pred EEeccC
Q 004370 501 KITSKV 506 (758)
Q Consensus 501 ~I~t~~ 506 (758)
.|.|..
T Consensus 69 Ei~T~~ 74 (117)
T cd01239 69 EIRTTT 74 (117)
T ss_pred EEEecC
Confidence 999974
No 55
>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis. During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex
Probab=97.35 E-value=0.00027 Score=67.04 Aligned_cols=100 Identities=19% Similarity=0.248 Sum_probs=66.2
Q ss_pred chhhcccCCC-----CCcccceeeeecCCcccccccchhh-----hhccceeecCccccccccccccccCchhhhhcccC
Q 004370 425 GFLLKKSSKT-----NGWSKRWFVLNEKTGKLGYTKKQEE-----RHFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEK 494 (758)
Q Consensus 425 GwL~K~g~~~-----~~WkkRWFVL~~~sg~L~YyK~~~e-----k~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~ 494 (758)
.||.|.+... +..++|||-|+..++.|+|+..... ....+.|.|.... .+.++.+.... .++.
T Consensus 13 ~~l~Ky~r~~~~~~~~~~h~R~fwv~~~~~~L~Ws~~~p~~~~~~~~~~~~i~I~~v~--~V~~~~~~~~~----~~~~- 85 (123)
T PF12814_consen 13 EWLYKYTRKGRSGISEKPHRRYFWVDPYTRTLYWSSSNPKSENPSESKAKSIRIESVT--EVKDGNPSPPG----LKKP- 85 (123)
T ss_pred cEEEEEcccccCccCCCcEEEEEEEeCCCCEEEecCCCCCccccccccccceEEeeeE--EecCCCCCCcc----cccc-
Confidence 4888875443 6899999999999999999985421 1223456665433 22222110000 0000
Q ss_pred CCceEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHh
Q 004370 495 GPSLIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQ 540 (758)
Q Consensus 495 ~~~~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~ 540 (758)
...+.|.|.+++ |++.|.|+|.++.+.|+++|+..++
T Consensus 86 ~~~~si~i~t~~---------R~L~l~a~s~~~~~~W~~aL~~L~~ 122 (123)
T PF12814_consen 86 DHNKSIIIVTPD---------RSLDLTAPSRERHEIWFNALRYLLQ 122 (123)
T ss_pred ccceEEEEEcCC---------eEEEEEeCCHHHHHHHHHHHHHHhh
Confidence 145677788875 9999999999999999999987664
No 56
>KOG1739 consensus Serine/threonine protein kinase GPBP [Signal transduction mechanisms; Defense mechanisms]
Probab=96.93 E-value=0.0011 Score=74.57 Aligned_cols=87 Identities=25% Similarity=0.471 Sum_probs=66.7
Q ss_pred cccchhhcccCCCCCcccceeeeecCCcccccccchhhhhc--cceeecCccccccccccccccCchhhhhcccCCCceE
Q 004370 422 ITAGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQEERHF--RGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPSLI 499 (758)
Q Consensus 422 i~~GwL~K~g~~~~~WkkRWFVL~~~sg~L~YyK~~~ek~~--kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~~~ 499 (758)
-+.|+|.|.-....+|+.|||||.... |.|||+..++.. +|.|.|....|.-.+. ..+.
T Consensus 25 e~~G~lskwtnyi~gwqdRyv~lk~g~--Lsyykse~E~~hGcRgsi~l~ka~i~ahEf-----------------De~r 85 (611)
T KOG1739|consen 25 ERCGVLSKWTNYIHGWQDRYVVLKNGA--LSYYKSEDETEHGCRGSICLSKAVITAHEF-----------------DECR 85 (611)
T ss_pred hhcceeeeeecccccccceEEEEcccc--hhhhhhhhhhhcccceeeEeccCCcccccc-----------------hhhe
Confidence 466777887777789999999999765 999998887655 8999997655532221 3467
Q ss_pred EEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhH
Q 004370 500 FKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLR 536 (758)
Q Consensus 500 F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiR 536 (758)
|-|.... ....|.|.+.+..+.|+.+|.
T Consensus 86 fdIsvn~---------nv~~lra~~~~hr~~w~d~L~ 113 (611)
T KOG1739|consen 86 FDISVND---------NVWYLRAQDPDHRQQWIDALE 113 (611)
T ss_pred eeeEecc---------ceeeehhcCcHHHHHHHHHHH
Confidence 7777654 567788899999999999983
No 57
>KOG3751 consensus Growth factor receptor-bound proteins (GRB7, GRB10, GRB14) [Signal transduction mechanisms]
Probab=96.90 E-value=0.00085 Score=76.01 Aligned_cols=105 Identities=23% Similarity=0.348 Sum_probs=68.3
Q ss_pred cccchhhcccCCCCCcccceeeeecCCcccccccchhhhhcc---ceeecCccccccccccccccCchhhhhc-ccCCCc
Q 004370 422 ITAGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQEERHFR---GVVTLEECYIEEVVEDEDAKSSKDKKKQ-AEKGPS 497 (758)
Q Consensus 422 i~~GwL~K~g~~~~~WkkRWFVL~~~sg~L~YyK~~~ek~~k---G~I~L~~~~v~~~~~~~~~~s~k~~~~n-p~~~~~ 497 (758)
...|||+-++-.++.|||.+|||.... |||+-+.+.++++ ..-.+.+-+|-.+-.+ + ||++ |+ .
T Consensus 318 ei~GfL~~K~dgkKsWKk~yf~LR~SG--LYys~K~tsk~~r~Lq~l~~~~~snVYt~i~~-----r--KkyksPT---d 385 (622)
T KOG3751|consen 318 EIQGFLYLKEDGKKSWKKHYFVLRRSG--LYYSTKGTSKEPRHLQCLADLHSSNVYTGIGG-----R--KKYKSPT---D 385 (622)
T ss_pred cccceeeecccccccceeEEEEEecCc--ceEccCCCCCCchhhHHHHhcccCceEEeecc-----h--hccCCCC---C
Confidence 678999999877889999999999887 9999877766655 4444444444322221 1 2333 33 3
Q ss_pred eEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHhh
Q 004370 498 LIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 498 ~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~~ 541 (758)
++|.|.... -++- ..---+|+||++..++.|++|||-+-|.
T Consensus 386 ~~f~~K~~~-~~~~--~r~lk~lCAEDe~t~~~WltAiRl~KyG 426 (622)
T KOG3751|consen 386 YGFCIKPNK-LRNK--RRFLKMLCAEDEQTRTCWLTAIRLLKYG 426 (622)
T ss_pred ceEEeeecc-ccCc--ccceeeeecccchhHHHHHHHHHHHHHH
Confidence 444444221 0110 0112378999999999999999987664
No 58
>KOG0248 consensus Cytoplasmic protein Max-1, contains PH, MyTH4 and FERM domains [Cytoskeleton]
Probab=96.88 E-value=0.00022 Score=82.45 Aligned_cols=54 Identities=13% Similarity=0.351 Sum_probs=44.2
Q ss_pred CCccccchhhcccCCCCCcccceeeeecCCcccccccchh--hhhccceeec-Cccccc
Q 004370 419 GGEITAGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQE--ERHFRGVVTL-EECYIE 474 (758)
Q Consensus 419 ~~~i~~GwL~K~g~~~~~WkkRWFVL~~~sg~L~YyK~~~--ek~~kG~I~L-~~~~v~ 474 (758)
++.-+.||+.+.+.+.+.|+||||||. +|++.||+.+. ..+++|.|.+ .+|.+.
T Consensus 247 e~~ekSgy~~~~~s~~k~lkrr~~v~k--~gqi~~y~~~~~~~~~p~s~~d~~s~~~~~ 303 (936)
T KOG0248|consen 247 ETMEKSGYWTQLTSRIKSLKRRYVVFK--NGQISFYRKHNNRDEEPASKIDIRSVTKLE 303 (936)
T ss_pred chhhcccchhcchHHHHHHHhHheeec--cceEEEEEcCCCccccccCcccccccceee
Confidence 555788999999999999999999998 45799999876 5678888888 455544
No 59
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=96.78 E-value=0.001 Score=76.28 Aligned_cols=98 Identities=17% Similarity=0.303 Sum_probs=60.9
Q ss_pred cccchhhcccCCCCCcccceeeeecCCcccccccchhhh-hccceeecCccccccccccccccCchhhhhcccCCCceEE
Q 004370 422 ITAGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQEER-HFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPSLIF 500 (758)
Q Consensus 422 i~~GwL~K~g~~~~~WkkRWFVL~~~sg~L~YyK~~~ek-~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~~~F 500 (758)
...|||.|.+.... |++|||.+......+.|...++.. .....++++ .+.++... .. . ...+.++.|
T Consensus 378 ~~~G~l~k~~~~~~-wk~ry~~l~~~~l~~~~~~~~~~~~~~~~~~~l~--~~~~v~pv---~~-----~-~~~~~~~~~ 445 (478)
T PTZ00267 378 THGGYLYKYSSDMR-WKKRYFYIGNGQLRISLSENPENDGVAPKSVNLE--TVNDVFPV---PE-----V-YSQKHPNQL 445 (478)
T ss_pred ccceEEeccCCCcc-hhhheEEecCCceEEEeccccccCCCCCccccHH--Hhcccccc---cH-----H-hcCCCCceE
Confidence 77899999987654 999999998765344444344321 111222221 11111111 00 0 012357888
Q ss_pred EEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHH
Q 004370 501 KITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVI 539 (758)
Q Consensus 501 ~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i 539 (758)
.|.+.. .+.+++.|+|.+|+++|+.+|+.++
T Consensus 446 ~i~~~~--------~~~~~~~~~~~~~~~~W~~~~~~~~ 476 (478)
T PTZ00267 446 VLWFNN--------GQKIIAYAKTAEDRDQWISKFQRAC 476 (478)
T ss_pred EEEecC--------CcEEEEecCChHHHHHHHHHHHHHh
Confidence 886653 4788888999999999999998865
No 60
>PLN02866 phospholipase D
Probab=96.60 E-value=0.0019 Score=79.13 Aligned_cols=92 Identities=14% Similarity=0.233 Sum_probs=62.5
Q ss_pred CCcccceeeeecCCcccccccchhhhhccceeecCcccccccccccc-ccCchhhhhcccCCCceEEEEeccCcchhhhh
Q 004370 435 NGWSKRWFVLNEKTGKLGYTKKQEERHFRGVVTLEECYIEEVVEDED-AKSSKDKKKQAEKGPSLIFKITSKVPYKTVLK 513 (758)
Q Consensus 435 ~~WkkRWFVL~~~sg~L~YyK~~~ek~~kG~I~L~~~~v~~~~~~~~-~~s~k~~~~np~~~~~~~F~I~t~~~~k~v~k 513 (758)
..|+||||||+.. .|.|.+++.+..+..+|-++-.--......+. ......|.-| ...+.|+|++..
T Consensus 216 ~~w~k~w~v~k~~--~l~~~~~p~~~~~~~v~lfD~~~~~~~~~~~~~~~~~~~k~~~---~~~~~~~i~~~~------- 283 (1068)
T PLN02866 216 DNWQKVWAVLKPG--FLALLEDPFDAKPLDIIVFDVLPASNGNGEGQISLAKEIKERN---PLRFGFKVTCGN------- 283 (1068)
T ss_pred CchheeEEEEecc--EEEEEecCCCCceeEEEEEecccccccCCCcceeecccccccC---CCcceEEEecCc-------
Confidence 4799999999976 59999999998888888776311000000000 0000000011 246789998874
Q ss_pred hhhhhhhhccChHHHHHHHHhhHHHHh
Q 004370 514 AHSALLLKAENMAEKFEWLNKLRVVIQ 540 (758)
Q Consensus 514 ~~r~~~L~AeS~eE~~~Wv~aiRa~i~ 540 (758)
|.+.|.|.|...+..|+.+|+.+..
T Consensus 284 --r~l~l~~~s~~~~~~w~~ai~~~~~ 308 (1068)
T PLN02866 284 --RSIRLRTKSSAKVKDWVAAINDAGL 308 (1068)
T ss_pred --eEEEEEECCHHHHHHHHHHHHHHHh
Confidence 8999999999999999999977663
No 61
>KOG3531 consensus Rho guanine nucleotide exchange factor CDEP [Signal transduction mechanisms]
Probab=96.54 E-value=0.0015 Score=77.33 Aligned_cols=96 Identities=20% Similarity=0.355 Sum_probs=77.2
Q ss_pred cccchhhcccCCCCCcccceeeeecCCcccccccchhhhhccceeecCccccccccccccccCchhhhhcccCCCceEEE
Q 004370 422 ITAGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQEERHFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPSLIFK 501 (758)
Q Consensus 422 i~~GwL~K~g~~~~~WkkRWFVL~~~sg~L~YyK~~~ek~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~~~F~ 501 (758)
+..|||..+-....+|+|-|.|++.-+ |++||+-.|.++.-.+||=|+++....... .-++.++|+
T Consensus 925 qLsg~LlrkfknssgwqkLwvvft~fc--l~fyKS~qD~~~laslPlLgysvs~P~~~d------------~i~K~~vfk 990 (1036)
T KOG3531|consen 925 QLSGYLLRKFKNSSGWQKLWVVFTNFC--LFFYKSHQDSEPLASLPLLGYSVSIPAEPD------------PIQKDYVFK 990 (1036)
T ss_pred hhhHHHHHHhhccccceeeeeeeccee--eEeecccccccccccccccccccCCCCCCC------------Ccchhheee
Confidence 678999877544558999999999864 999999999999999999888775322111 024789999
Q ss_pred EeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHh
Q 004370 502 ITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQ 540 (758)
Q Consensus 502 I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~ 540 (758)
+.-+. ..|+++|++.-....|+..||....
T Consensus 991 l~fk~---------hvyffraes~yt~~rw~evi~~a~~ 1020 (1036)
T KOG3531|consen 991 LKFKS---------HVYFFRAESYYTFERWMEVITDAPS 1020 (1036)
T ss_pred eehhh---------hHHHHhhhhhhhhhhHHHHhhcCCc
Confidence 98764 6899999999999999999977543
No 62
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=96.36 E-value=0.0038 Score=73.99 Aligned_cols=98 Identities=20% Similarity=0.391 Sum_probs=69.1
Q ss_pred cccchhhcccCC---CCCcccceeeeecCCcccccccchhhhhccceeec------CccccccccccccccCchhhhhcc
Q 004370 422 ITAGFLLKKSSK---TNGWSKRWFVLNEKTGKLGYTKKQEERHFRGVVTL------EECYIEEVVEDEDAKSSKDKKKQA 492 (758)
Q Consensus 422 i~~GwL~K~g~~---~~~WkkRWFVL~~~sg~L~YyK~~~ek~~kG~I~L------~~~~v~~~~~~~~~~s~k~~~~np 492 (758)
..+|||+..|.. ....++|+|||.+.. |.|||.+.... ++|| .+|.|++.--. ..
T Consensus 5 ~~eGW~y~~g~~kig~~~~~~Ry~vl~~~~--~~~yK~~P~~~---~~pirs~~id~~~rVed~Gr~---------~~-- 68 (719)
T PLN00188 5 VYEGWMVRYGRRKIGRSYIHMRYFVLESRL--LAYYKKKPQDN---QVPIKTLLIDGNCRVEDRGLK---------TH-- 68 (719)
T ss_pred eEeeEEEEEcccccccccceeEEEEEecch--hhhcccCCccc---cccceeeccCCCceEeecCce---------EE--
Confidence 689999988643 456899999999885 99999743222 4444 35566543110 00
Q ss_pred cCCCceEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHhh
Q 004370 493 EKGPSLIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 493 ~~~~~~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~~ 541 (758)
.++--++|+|.++. ...+.+.|.|-+.+|...|+.+|+.++..
T Consensus 69 ~g~~~yvl~~Yn~~------~~~~~~~~~a~~~eea~~W~~a~~~a~~q 111 (719)
T PLN00188 69 HGHMVYVLSVYNKK------EKYHRITMAAFNIQEALIWKEKIESVIDQ 111 (719)
T ss_pred cCceEEEEEEecCC------CccccEEEecCCHHHHHHHHHHHHHHHhh
Confidence 02245678887663 34589999999999999999999888874
No 63
>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain. Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.32 E-value=0.0039 Score=58.08 Aligned_cols=97 Identities=18% Similarity=0.249 Sum_probs=65.9
Q ss_pred cccchhhcccCCCCCcccceeeeecCCcccccccchh----hhhccceeecCccccccccccccccCchhhhhcccCCCc
Q 004370 422 ITAGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQE----ERHFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPS 497 (758)
Q Consensus 422 i~~GwL~K~g~~~~~WkkRWFVL~~~sg~L~YyK~~~----ek~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~ 497 (758)
|.+|=|.+.+...+.=+.|.|-|=+.. |.|=|... .-..+|.|.|+.|.|.+++++....+ | ....
T Consensus 3 i~~Gel~~~s~~~g~~q~R~~FLFD~~--LI~CKkd~~r~~~~~yKgri~l~~~~I~d~~Dg~~~~~------~--~~~k 72 (109)
T cd01224 3 FLQGEATRQKQNKGWNSSRVLFLFDHQ--MVLCKKDLIRRDHLYYKGRIDLDRCEVVNIRDGKMFSS------G--HTIK 72 (109)
T ss_pred eEeeeEEEEecccCCcccEEEEEecce--EEEEecccccCCcEEEEEEEEcccEEEEECCCCccccC------C--ceeE
Confidence 455666665533222345666655443 77777542 22458999999999999887631100 0 1267
Q ss_pred eEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhh
Q 004370 498 LIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKL 535 (758)
Q Consensus 498 ~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~ai 535 (758)
+.|+|.+.. ....|+|.|.|.+++..|+++|
T Consensus 73 nafkl~~~~-------~~~~~~f~~Kt~e~K~~Wm~a~ 103 (109)
T cd01224 73 NSLKIYSES-------TDEWYLFSFKSAERKHRWLSAF 103 (109)
T ss_pred EEEEEEEcC-------CCeEEEEEECCHHHHHHHHHHH
Confidence 899999874 2467999999999999999998
No 64
>cd01240 PH_beta-ARK Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta ARK1 is a G protein-coupled receptor kinase (GRK). It phosphorylates activated G-protein coupled receptors leading to the release of the previously bound heterotrimeric G protein agonist and thus signal termination. It consists of a domain found in regulators of G-protein signaling (RGS)(RH), a serine/threonine kinase domain and a C-terminal PH domain. The Beta-Ark 1 PH domain has an extended C-terminal helix, which mediates interactions with G beta gamma subunits. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or
Probab=95.99 E-value=0.0028 Score=58.62 Aligned_cols=96 Identities=18% Similarity=0.304 Sum_probs=64.7
Q ss_pred ccccchhhcccCC-CCCcccceeeeecCCcccccccchhhhhccceeecCccccccccccccccCchhhhhcccCCCceE
Q 004370 421 EITAGFLLKKSSK-TNGWSKRWFVLNEKTGKLGYTKKQEERHFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPSLI 499 (758)
Q Consensus 421 ~i~~GwL~K~g~~-~~~WkkRWFVL~~~sg~L~YyK~~~ek~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~~~ 499 (758)
+|..||+.|-|+. ...|++|+|-|-.+- |.||-...+ ...-.|.++.. ++++.++... +...+
T Consensus 3 cIvhGyi~KLGGPFls~WQ~Ry~~LfPNR--LE~~~~~~~-~~~eLi~M~~i--~~V~~e~~~i-----------K~~~C 66 (116)
T cd01240 3 CIVHGYIKKLGGPFLSQWQTRYFKLYPNR--LELYGESEA-NKPELITMDQI--EDVSVEFQQI-----------KEENC 66 (116)
T ss_pred eEEeeehhhhCCHHHHHHHHHHheeCcce--eeecccccc-cCCcEEEeehh--hhcchhheee-----------ccCce
Confidence 3889999999765 578999999999884 999754433 33445555443 2333222100 12334
Q ss_pred EEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHh
Q 004370 500 FKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQ 540 (758)
Q Consensus 500 F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~ 540 (758)
+.|.-+ +.+.|+|.+++.-+..+|+..||.+..
T Consensus 67 I~ik~k--------~~~k~vlt~~d~i~l~qW~~elr~a~r 99 (116)
T cd01240 67 ILLKIR--------DEKKIVLTNSDEIELKQWKKELRDAHR 99 (116)
T ss_pred EEEEEc--------CCceEEEecCCcHHHHHHHHHHHHHHH
Confidence 444433 357899999999999999999988764
No 65
>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=95.80 E-value=0.0082 Score=53.91 Aligned_cols=84 Identities=14% Similarity=0.222 Sum_probs=60.4
Q ss_pred cccchhhcccCCCCCcccceeeeecCCcccccccchhhhhccceeecCc--cccccccccccccCchhhhhcccCCCceE
Q 004370 422 ITAGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQEERHFRGVVTLEE--CYIEEVVEDEDAKSSKDKKKQAEKGPSLI 499 (758)
Q Consensus 422 i~~GwL~K~g~~~~~WkkRWFVL~~~sg~L~YyK~~~ek~~kG~I~L~~--~~v~~~~~~~~~~s~k~~~~np~~~~~~~ 499 (758)
+..|.+.|+.+. .+|+|=|+|++- .+|+|+ |+.....+|.||+.. +.++.. ....
T Consensus 2 l~~g~v~Kr~gl--f~kkR~LiLTd~-PrL~yv-dp~~~~~KgeIp~s~~~l~v~~~-------------------~~~~ 58 (89)
T cd01262 2 LKIGAVKKRKGL--FAKKRQLILTNG-PRLIYV-DPVKKVVKGEIPWSDVELRVEVK-------------------NSSH 58 (89)
T ss_pred ceeeeeeehhcc--ccceeeEEEecC-ceEEEE-cCCcCeEEeEecccccceEEEEe-------------------cCcc
Confidence 456777777664 579999999985 366666 566778899999965 333211 3457
Q ss_pred EEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHH
Q 004370 500 FKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVV 538 (758)
Q Consensus 500 F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~ 538 (758)
|.|.+|. |+|+|. +..-....|+.+|.++
T Consensus 59 F~I~Tp~---------rty~le-D~~~~a~~W~~~I~~~ 87 (89)
T cd01262 59 FFVHTPN---------KVYSFE-DPKGRASQWKKAIEDL 87 (89)
T ss_pred EEEECCC---------ceEEEE-CCCCCHHHHHHHHHHH
Confidence 9999985 899884 4456688899999654
No 66
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=95.35 E-value=0.008 Score=71.54 Aligned_cols=92 Identities=18% Similarity=0.400 Sum_probs=75.5
Q ss_pred ccccchhhcccCC-CCCcccceeeeecCCcccccccchhhhhccceeecCccccccccccccccCchhhhhcccCCCceE
Q 004370 421 EITAGFLLKKSSK-TNGWSKRWFVLNEKTGKLGYTKKQEERHFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPSLI 499 (758)
Q Consensus 421 ~i~~GwL~K~g~~-~~~WkkRWFVL~~~sg~L~YyK~~~ek~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~~~ 499 (758)
.++.|||.|.++. .--++|||.-+.+.+ |.||-.+.+..++|.|++........- +...
T Consensus 87 ~~~~gwldk~~pqg~~~~qkr~vkf~~~s--~~yf~~~k~py~k~~i~va~is~v~~~------------------gd~k 146 (1186)
T KOG1117|consen 87 VIKSGWLDKLSPQGEYPFQKRWVKFDGSS--LEYFLSPKDPYSKGPIPVAAISAVRNF------------------GDNK 146 (1186)
T ss_pred hhhcchhhccCcCcccccCccceecCCCC--ccccCCCCCCCCCCceeeehhhhhhhc------------------cCce
Confidence 4999999999654 456999999999886 999999999999999999765432111 3456
Q ss_pred EEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHhh
Q 004370 500 FKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 500 F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~~ 541 (758)
|.+.+. .|++++++++..+...|+..++.+..+
T Consensus 147 fevitn---------~r~fvfr~e~~~~r~~w~s~l~s~~~~ 179 (1186)
T KOG1117|consen 147 FEVITN---------QRTFVFRQESEGERFIWVSPLQSALKE 179 (1186)
T ss_pred EEEEec---------ceEEEEecCCcccceeeechhhhcchh
Confidence 788775 499999999999999999999887765
No 67
>cd01258 PH_syntrophin Syntrophin pleckstrin homology (PH) domain. Syntrophin pleckstrin homology (PH) domain. Syntrophins are peripheral membrane proteins, which associate with the Duchenne muscular dystrophy protein dystrophin and other proteins to form the dystrophin glycoprotein complex (DGC). There are five syntrophin isoforms, alpha1, beta1, beta2, gamma1, and gamma2. They all contain two PH domains, with the N-teminal PH domain interupted by a PDZ domain. The N-terminal PH domain of alpha1syntrophin binds phosphatidylinositol 4,5-bisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=95.30 E-value=0.016 Score=53.94 Aligned_cols=95 Identities=14% Similarity=0.213 Sum_probs=60.0
Q ss_pred chhhcc--c-C-CCCCcccceeeeecCCcccccccchhhh-----hccceeecCccccccccccccccCchhhhhcccCC
Q 004370 425 GFLLKK--S-S-KTNGWSKRWFVLNEKTGKLGYTKKQEER-----HFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKG 495 (758)
Q Consensus 425 GwL~K~--g-~-~~~~WkkRWFVL~~~sg~L~YyK~~~ek-----~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~ 495 (758)
||+..+ + + ....||.|+++|++.. |+.|+.+--. .+.-.-+|=+...+.+..+. ... ...+
T Consensus 3 GW~~E~~~~~~~~~~~wrP~F~aL~~~d--l~ly~s~P~s~e~w~~p~~~y~L~~~atrvv~~~~-~~~-------~~~~ 72 (108)
T cd01258 3 GWVNEQLSGDDESSQRWRPRFLALKGSE--FLFFETPPLSVEDWSRPLYVYKLYDVATRLVKNSS-TRR-------LNDQ 72 (108)
T ss_pred eecccccCCCCccccccceEEEEEcCCc--EEEEeCCCCCHHHHhChhhhChhHHhhhheeccCC-ccC-------cCCC
Confidence 788766 2 2 3578999999999865 9999877532 23333333211111111110 000 0124
Q ss_pred CceEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhH
Q 004370 496 PSLIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLR 536 (758)
Q Consensus 496 ~~~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiR 536 (758)
..++|.|.+.. + -.+.+|+.|+..|+..|..+|.
T Consensus 73 ~~~~F~irtg~--~-----vesh~fsVEt~~dL~~W~raiv 106 (108)
T cd01258 73 RDNCFLIRTGT--Q-----VENHYLRVETHRDLASWERALV 106 (108)
T ss_pred CceEEEEEcCC--c-----eeeEEEEecCHHHHHHHHHHHh
Confidence 67899999874 1 2678999999999999999984
No 68
>PF15406 PH_6: Pleckstrin homology domain
Probab=95.01 E-value=0.015 Score=53.93 Aligned_cols=62 Identities=24% Similarity=0.442 Sum_probs=43.2
Q ss_pred cccccccchhhhhccceeecCccccccccccccccCchhhhhcccCCCceEEEEeccCcchhhhhhhhhhhhhccChHHH
Q 004370 449 GKLGYTKKQEERHFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPSLIFKITSKVPYKTVLKAHSALLLKAENMAEK 528 (758)
Q Consensus 449 g~L~YyK~~~ek~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~ 528 (758)
|-|+|-|.+....|-|+|+|.+.. ++..+ +...+.|++.. +...|.|.|.+|+
T Consensus 50 GLLF~~K~~dka~P~GiinLadas--e~~~~--------------g~~kF~f~~~G-----------~khtF~A~s~aER 102 (112)
T PF15406_consen 50 GLLFFSKAEDKASPSGIINLADAS--EPEKD--------------GSNKFHFKIKG-----------HKHTFEAASAAER 102 (112)
T ss_pred eEEEEeccccccCCcceEehhhcc--ccccC--------------CCceEEEEeCC-----------ceeeeecCCHHHh
Confidence 568888856667899999995532 22211 22456666632 4567899999999
Q ss_pred HHHHHhhHH
Q 004370 529 FEWLNKLRV 537 (758)
Q Consensus 529 ~~Wv~aiRa 537 (758)
+.||..|.+
T Consensus 103 D~Wv~~lk~ 111 (112)
T PF15406_consen 103 DNWVAQLKA 111 (112)
T ss_pred ccHHHHhhc
Confidence 999999853
No 69
>KOG0932 consensus Guanine nucleotide exchange factor EFA6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.92 E-value=0.16 Score=58.65 Aligned_cols=94 Identities=20% Similarity=0.410 Sum_probs=61.4
Q ss_pred cccchhhcc------cCC----CCCcccceeeeecCCcccccccchhhhhcc--ceeecCc-cccccccccccccCchhh
Q 004370 422 ITAGFLLKK------SSK----TNGWSKRWFVLNEKTGKLGYTKKQEERHFR--GVVTLEE-CYIEEVVEDEDAKSSKDK 488 (758)
Q Consensus 422 i~~GwL~K~------g~~----~~~WkkRWFVL~~~sg~L~YyK~~~ek~~k--G~I~L~~-~~v~~~~~~~~~~s~k~~ 488 (758)
.+.|+|..+ |.+ +.+||..+-||.+- +.||..++.+.-+ ..-.|++ +.|......
T Consensus 507 Yk~G~L~RK~had~DgkKTPrGkRgWk~fya~LkG~---vLYlqkDey~p~kalse~~lknavsvHHALAt--------- 574 (774)
T KOG0932|consen 507 YKSGFLARKYHADMDGKKTPRGKRGWKMFYAVLKGM---VLYLQKDEYKPGKALSESDLKNAVSVHHALAT--------- 574 (774)
T ss_pred hhhhhhhhhhhccccCCcCCccchhHHHHHHHHhhh---eEEeeccccCcccchhhhhhhhhhhhhhhhcC---------
Confidence 788999766 322 45799999999864 6677665433221 1111222 112111111
Q ss_pred hhccc-CCCceEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhH
Q 004370 489 KKQAE-KGPSLIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLR 536 (758)
Q Consensus 489 ~~np~-~~~~~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiR 536 (758)
..+| .+++++|++.+.+ -|.|.|.|.|++||.+|+..|.
T Consensus 575 -~AtdY~KKp~Vf~lrtAd--------wrv~LFQaps~eEmqsWi~rIN 614 (774)
T KOG0932|consen 575 -PATDYSKKPHVFKLRTAD--------WRVFLFQAPSQEEMQSWIERIN 614 (774)
T ss_pred -CCcccccCCceEEEEecc--------ceeEEEeCCCHHHHHHHHHHHH
Confidence 0123 4689999999985 7999999999999999999993
No 70
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=94.83 E-value=0.023 Score=65.62 Aligned_cols=98 Identities=21% Similarity=0.275 Sum_probs=65.7
Q ss_pred cccchhhcccCCCCCcccceeeeecCCcccccccchhhhhccceeecCccccccccc-cccccCchhhhhcccCCCceEE
Q 004370 422 ITAGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQEERHFRGVVTLEECYIEEVVE-DEDAKSSKDKKKQAEKGPSLIF 500 (758)
Q Consensus 422 i~~GwL~K~g~~~~~WkkRWFVL~~~sg~L~YyK~~~ek~~kG~I~L~~~~v~~~~~-~~~~~s~k~~~~np~~~~~~~F 500 (758)
|++|-+.|-+.+.++.++|+.+|=.+- |.|-+... ++++.-+.+..... .++. .+ ..-| ....+.|
T Consensus 273 iKEG~l~Kis~k~~~~qeRylfLFNd~--~lyc~~r~------~~~~~k~~~r~~~s~~~~~--v~-~~~~--~~~~~tF 339 (623)
T KOG4424|consen 273 IKEGQLQKISAKNGTTQERYLFLFNDI--LLYCKPRK------RLPGSKYEVRARCSISHMQ--VQ-EDDN--EELPHTF 339 (623)
T ss_pred hhccceeeeeccCCCcceeEEEEehhH--HHhhhhhh------hcccceeccceeeccCcch--hc-cccc--ccCCceE
Confidence 999999999999999999999987652 44443221 22222222221110 0000 00 0011 2357899
Q ss_pred EEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHhh
Q 004370 501 KITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 501 ~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~~ 541 (758)
.++.++ |.++|.|.|++++.+|+.+|+.+|+.
T Consensus 340 ~~~G~~---------r~vel~a~t~~ek~eWv~~I~~~Id~ 371 (623)
T KOG4424|consen 340 ILTGKK---------RGVELQARTEQEKKEWVQAIQDAIDK 371 (623)
T ss_pred EEeccc---------ceEEeecCchhhHHHHHHHHHHHHHH
Confidence 999975 99999999999999999999999985
No 71
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]
Probab=94.47 E-value=0.82 Score=53.29 Aligned_cols=93 Identities=14% Similarity=0.301 Sum_probs=57.6
Q ss_pred ccccchhhcc--cCCCCCcccceeeeecCCcccccccchh-hhhccc---eeecCccccccccccccccCchhhhhcccC
Q 004370 421 EITAGFLLKK--SSKTNGWSKRWFVLNEKTGKLGYTKKQE-ERHFRG---VVTLEECYIEEVVEDEDAKSSKDKKKQAEK 494 (758)
Q Consensus 421 ~i~~GwL~K~--g~~~~~WkkRWFVL~~~sg~L~YyK~~~-ek~~kG---~I~L~~~~v~~~~~~~~~~s~k~~~~np~~ 494 (758)
.+++|||+-+ +.....|-|+|||-..++..+...--.. -....| .+.|.-|.=+..+. -
T Consensus 265 ~t~eGYlY~QEK~~~g~sWvKyYC~Y~retk~~TMvp~~qk~g~k~g~~~~~~lKsC~RRktdS-------------I-- 329 (812)
T KOG1451|consen 265 STKEGYLYMQEKSKIGKSWVKYYCVYSRETKIFTMVPANQKTGTKMGQTATFKLKSCSRRKTDS-------------I-- 329 (812)
T ss_pred cccceeeeehhhhhccchhhhheeEeecccceEEEeecccCCCCcCCCcceEEehhhccCcccc-------------c--
Confidence 3899999876 4445689999999987763332211111 111112 22233333221111 1
Q ss_pred CCceEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhh
Q 004370 495 GPSLIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKL 535 (758)
Q Consensus 495 ~~~~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~ai 535 (758)
.+.++|-|...+ .--++.+.|=|++++..|+.++
T Consensus 330 dKRFCFDve~~e-------rpgviTmQALSE~drrlWmeAM 363 (812)
T KOG1451|consen 330 DKRFCFDVEVEE-------RPGVITMQALSEKDRRLWMEAM 363 (812)
T ss_pred ccceeeeeeecc-------cCCeeehHhhhhhHHHHHHHHh
Confidence 267999998765 1357899999999999999997
No 72
>cd01225 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool/Pix contains an N-terminal SH3 domain followed by a RhoGEF (DH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=94.39 E-value=0.044 Score=51.15 Aligned_cols=78 Identities=17% Similarity=0.271 Sum_probs=59.6
Q ss_pred cccceeeeecCCccccccc-chhh--hhccceeecCccccccccccccccCchhhhhcccCCCceEEEEeccCcchhhhh
Q 004370 437 WSKRWFVLNEKTGKLGYTK-KQEE--RHFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPSLIFKITSKVPYKTVLK 513 (758)
Q Consensus 437 WkkRWFVL~~~sg~L~YyK-~~~e--k~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~~~F~I~t~~~~k~v~k 513 (758)
=+.|+|||=... |.... ++.. --.+|.+||.+.+|..+++.. +..+.|.|..+.
T Consensus 28 ~~eRyLvLFp~~--LlilS~s~r~sGf~yqGkLPL~~i~v~~lEd~e--------------~~~~aFeI~G~l------- 84 (111)
T cd01225 28 KRERYLVLFPNV--LLMLSASPRMSGFIYQGKLPLTGIIVTRLEDTE--------------ALKNAFEISGPL------- 84 (111)
T ss_pred cceeEEEEcCce--EEEEEcCCCccceEEeeeecccccEEechHhcc--------------CccceEEEeccC-------
Confidence 457999998764 65555 3333 345899999999998776542 257899999875
Q ss_pred hhhhhhhhccChHHHHHHHHhhHHH
Q 004370 514 AHSALLLKAENMAEKFEWLNKLRVV 538 (758)
Q Consensus 514 ~~r~~~L~AeS~eE~~~Wv~aiRa~ 538 (758)
-..+.+.|.+++|..+|+..|++-
T Consensus 85 -i~~i~v~C~~~~e~~~Wl~hL~~~ 108 (111)
T cd01225 85 -IERIVVVCNNPQDAQEWVELLNAN 108 (111)
T ss_pred -cCcEEEEeCCHHHHHHHHHHHHhh
Confidence 378899999999999999999664
No 73
>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=94.39 E-value=0.049 Score=49.86 Aligned_cols=90 Identities=19% Similarity=0.327 Sum_probs=57.2
Q ss_pred cccchhhcccCCCCCcccceeeeecCCcccccccchhhh-hccceeecCccccccccccccccCchhhhhcccCCCceEE
Q 004370 422 ITAGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQEER-HFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPSLIF 500 (758)
Q Consensus 422 i~~GwL~K~g~~~~~WkkRWFVL~~~sg~L~YyK~~~ek-~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~~~F 500 (758)
+.+|.|.-.+.+.. |+=|.++. .|.|-|...++ ..|..|.+.+..|.+..++ .++.|
T Consensus 5 lleg~l~~~~~~~e---R~vFLFe~---~ll~~K~~~~~y~~K~~i~~~~l~i~e~~~~----------------d~~~F 62 (97)
T cd01222 5 LLEGRFREHGGGKP---RLLFLFQT---MLLIAKPRGDKYQFKAYIPCKNLMLVEHLPG----------------EPLCF 62 (97)
T ss_pred eeeceEEeecCCCc---eEEEEecc---cEEEEEecCCeeEEEEEEEecceEEecCCCC----------------CCcEE
Confidence 45566653333221 34444442 26665544432 3367788888777643322 36899
Q ss_pred EEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHH
Q 004370 501 KITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVI 539 (758)
Q Consensus 501 ~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i 539 (758)
.|.+.+ ...++|+|.|.|.++++.|+.+|+.++
T Consensus 63 ~v~~~~------~p~~~~~l~A~s~e~K~~W~~~i~~~i 95 (97)
T cd01222 63 RVIPFD------DPKGALQLTARNREEKRIWTQQLKRAM 95 (97)
T ss_pred EEEecC------CCceEEEEEecCHHHHHHHHHHHHHHh
Confidence 997763 123689999999999999999998765
No 74
>KOG1738 consensus Membrane-associated guanylate kinase-interacting protein/connector enhancer of KSR-like [Nucleotide transport and metabolism]
Probab=94.25 E-value=0.014 Score=67.93 Aligned_cols=54 Identities=24% Similarity=0.372 Sum_probs=46.2
Q ss_pred cccchhhcccCC---CCCcccceeeeecCCcccccccchhhhhccceeecCcccccccc
Q 004370 422 ITAGFLLKKSSK---TNGWSKRWFVLNEKTGKLGYTKKQEERHFRGVVTLEECYIEEVV 477 (758)
Q Consensus 422 i~~GwL~K~g~~---~~~WkkRWFVL~~~sg~L~YyK~~~ek~~kG~I~L~~~~v~~~~ 477 (758)
.+.|||++.+-. ...|++.||||++.. |+||.+++.+.+.++|.|...+|....
T Consensus 563 ~~qg~~~r~k~~~~~~~kW~k~~~~l~~~~--l~~y~n~~~~~~e~~i~l~~~~i~~a~ 619 (638)
T KOG1738|consen 563 DRQGWLTRLKLNHLTQEKWRKIWMVLNDDP--LLNYRNHRVRAAESVIKLPLFTISVAE 619 (638)
T ss_pred hhhccchhhccchHHHHHhhhheeeecCch--hhhhhhhhhhchhheeeccchhhhhHH
Confidence 678999877422 457999999999987 999999999999999999999886544
No 75
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=93.95 E-value=0.0098 Score=65.37 Aligned_cols=79 Identities=25% Similarity=0.551 Sum_probs=62.9
Q ss_pred CcccceeeeecCCcccccccchhhh---hccceeecCccc-cccccccccccCchhhhhcccCCCceEEEEeccCcchhh
Q 004370 436 GWSKRWFVLNEKTGKLGYTKKQEER---HFRGVVTLEECY-IEEVVEDEDAKSSKDKKKQAEKGPSLIFKITSKVPYKTV 511 (758)
Q Consensus 436 ~WkkRWFVL~~~sg~L~YyK~~~ek---~~kG~I~L~~~~-v~~~~~~~~~~s~k~~~~np~~~~~~~F~I~t~~~~k~v 511 (758)
.|++-||||+..+ |.||.+..-. ...|+|.|..|. |..+.. ..++.|.|.+.+
T Consensus 34 ~~~k~~~~~~~~~--~~~~~d~~A~~~~~L~~~~~LR~C~~v~e~a~----------------q~nY~~~i~~~~----- 90 (593)
T KOG4807|consen 34 QWKKHWFVLTDSS--LKYYRDSTAEEADELDGEIDLRSCTDVTEYAV----------------QRNYGFQIHTKD----- 90 (593)
T ss_pred HHHHHHHHHhHHH--HHHHHHHHHHhcccCCccccHHHHHHHHHHHH----------------Hhccceeecccc-----
Confidence 4999999999886 9999987643 457999998885 333321 157889999886
Q ss_pred hhhhhhhhhhccChHHHHHHHHhhHHHHhh
Q 004370 512 LKAHSALLLKAENMAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 512 ~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~~ 541 (758)
-.|.|.|-+.--...|+.++|..+.|
T Consensus 91 ----~~~tL~~~~s~Ir~~~~~A~~kT~~P 116 (593)
T KOG4807|consen 91 ----AVYTLSAMTSGIRRNWIEALRKTVRP 116 (593)
T ss_pred ----hhhhhHHHHHHHHHHHHHHHHhccCC
Confidence 56888898888899999999988877
No 76
>KOG1737 consensus Oxysterol-binding protein [Lipid transport and metabolism]
Probab=93.05 E-value=0.052 Score=65.60 Aligned_cols=88 Identities=24% Similarity=0.367 Sum_probs=62.1
Q ss_pred cccchhhcccCCCCCcccceeeeecCCcccccccchhh--hhccceeecCccccccccccccccCchhhhhcccCCCceE
Q 004370 422 ITAGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQEE--RHFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPSLI 499 (758)
Q Consensus 422 i~~GwL~K~g~~~~~WkkRWFVL~~~sg~L~YyK~~~e--k~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~~~ 499 (758)
-.+|||.|...+.++|++|||||. .|.|.||++... ...+|.|++....+...+. ..
T Consensus 78 ~~~g~l~k~~n~~~~~~~r~f~l~--~g~ls~~~~~~~~~~~~~~~~~~~~a~i~~~~~-------------------~~ 136 (799)
T KOG1737|consen 78 SLEGILLKWRNYSKGPSSRWFVLS--GGLLSYYFDNSFSKTTCGGGINLVTAWIQNGER-------------------MD 136 (799)
T ss_pred cccceeeccccccCCcccceEEec--CcceeeeccCCccccCCCCcccccccccccCCC-------------------cc
Confidence 467999999999999999999999 468999987763 4557788775544432221 11
Q ss_pred EEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHH
Q 004370 500 FKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVV 538 (758)
Q Consensus 500 F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~ 538 (758)
+.+... ..+.+.+.+.+..+...|+.+++-+
T Consensus 137 ~~~~~~--------~~q~~~~~~~~~~~~~~~~~~~~l~ 167 (799)
T KOG1737|consen 137 ICSVDG--------SCQIYLVELSKKLQRQGWLHALELA 167 (799)
T ss_pred cchhhc--------ccchhhhhhhHHHhhcchhhhhhhc
Confidence 111111 1256788888999999999998655
No 77
>PTZ00283 serine/threonine protein kinase; Provisional
Probab=91.71 E-value=0.17 Score=58.74 Aligned_cols=37 Identities=24% Similarity=0.507 Sum_probs=32.4
Q ss_pred CCceEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHH
Q 004370 495 GPSLIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVI 539 (758)
Q Consensus 495 ~~~~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i 539 (758)
+.+++|.+.... .|.+-|.|.+.+|++.|+.+|+.++
T Consensus 453 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (496)
T PTZ00283 453 NAAHVFAVAFKT--------GRRLLFQARSDPERDAWMQKIQSVL 489 (496)
T ss_pred CCCcEEEEEecC--------CcEEEEecCCchhHHHHHHHHHHhc
Confidence 368999998764 6999999999999999999997765
No 78
>cd01221 PH_ephexin Ephexin Pleckstrin homology (PH) domain. Ephexin Pleckstrin homology (PH) domain. Ephexin contains a RhoGEF (DH) followed by a PH domain and an SH3 domain. The ephexin PH domain is believed to act with the DH domain in mediating protein-protein interactions with the Eph receptor. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=91.71 E-value=0.15 Score=48.83 Aligned_cols=37 Identities=24% Similarity=0.407 Sum_probs=27.8
Q ss_pred CceEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhh
Q 004370 496 PSLIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKL 535 (758)
Q Consensus 496 ~~~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~ai 535 (758)
.++.|.|+--. |--...+.++|+|+|++|+..|+.+|
T Consensus 82 ~~~~F~ltLl~---N~~gk~~el~L~a~S~sdr~rWi~Al 118 (125)
T cd01221 82 RPNLFLLTLLR---NADDKQAELLLSADSQSDRERWLSAL 118 (125)
T ss_pred CCceEEEEeec---cCCCCEEEEEEECCCHHHHHHHHHhc
Confidence 57889996321 11122478999999999999999998
No 79
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=91.68 E-value=0.04 Score=63.74 Aligned_cols=97 Identities=15% Similarity=0.349 Sum_probs=64.2
Q ss_pred cccchhhcccCC-CCCcccceeeeecCCccccccc----chhhhhccceeecCccccccccccccccCchhhhhcccCCC
Q 004370 422 ITAGFLLKKSSK-TNGWSKRWFVLNEKTGKLGYTK----KQEERHFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGP 496 (758)
Q Consensus 422 i~~GwL~K~g~~-~~~WkkRWFVL~~~sg~L~YyK----~~~ek~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~ 496 (758)
-..|||+--|.. ++.||||+|||-.-+ -|-|. -+...+|.-.|.|+|++|.-.++.. .. .+.
T Consensus 465 khsgylyaig~nvwkrwkkrffvlvqvs--qytfamcsyrekkaepqel~qldgytvdytdp~p-gl----------qgg 531 (1218)
T KOG3543|consen 465 KHSGYLYAIGRNVWKRWKKRFFVLVQVS--QYTFAMCSYREKKAEPQELIQLDGYTVDYTDPSP-GL----------QGG 531 (1218)
T ss_pred ccceeehhhhhHHHHHhHhhEEEEEEhh--hhhhHhhhhhhcccChHHHhhccCeeeccCCCCC-cc----------ccc
Confidence 457898877654 678999999997533 12121 1223466778999999986443220 00 122
Q ss_pred ceEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhh-HHHHh
Q 004370 497 SLIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKL-RVVIQ 540 (758)
Q Consensus 497 ~~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~ai-Ra~i~ 540 (758)
.+-| |.+|...++.|..+++.|+.-|+.++ |+.-+
T Consensus 532 ~~ff---------navkegdtvifasddeqdr~lwvqamyratgq 567 (1218)
T KOG3543|consen 532 KHFF---------NAVKEGDTVIFASDDEQDRHLWVQAMYRATGQ 567 (1218)
T ss_pred hHHH---------HHhccCceEEeccCchhhhhHHHHHHHHhhCC
Confidence 3333 34556789999999999999999999 77543
No 80
>cd01226 PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exo84 is a subunit of the exocyt complex, which is important in intracellular trafficking. In metazoa, Exo84 has a PH domain towards its N-terminus. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=91.48 E-value=0.17 Score=46.58 Aligned_cols=74 Identities=18% Similarity=0.267 Sum_probs=54.6
Q ss_pred ceeeeecCCccccccc--chhhhhccceeecCccccccccccccccCchhhhhcccCCCceEEEEeccCcchhhhhhhhh
Q 004370 440 RWFVLNEKTGKLGYTK--KQEERHFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPSLIFKITSKVPYKTVLKAHSA 517 (758)
Q Consensus 440 RWFVL~~~sg~L~YyK--~~~ek~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~~~F~I~t~~~~k~v~k~~r~ 517 (758)
+.|.|++- |.|=. ....-.+..+++|++..|.++.+.. +-+.+|+|.++. ++
T Consensus 23 ~~FLfND~---Lvva~~~~~~ky~~~~~~~L~~i~V~ni~D~~--------------~~kNafki~t~~---------~s 76 (100)
T cd01226 23 MLFLLNDR---LIVGNINAAGKYVMESTYSLNSVAVVNVKDRE--------------NAKKVLKLLIFP---------ES 76 (100)
T ss_pred EEEEeccE---EEEEEecccceEEEEEEEehHHeEEEecCCCc--------------CcCceEEEEeCC---------cc
Confidence 46777753 55532 2222244578999999998887653 256799999885 88
Q ss_pred hhhhccChHHHHHHHHhhHHHH
Q 004370 518 LLLKAENMAEKFEWLNKLRVVI 539 (758)
Q Consensus 518 ~~L~AeS~eE~~~Wv~aiRa~i 539 (758)
+.+.|+|.+++.+|++.|..+.
T Consensus 77 ~i~qaes~~~K~eWl~~le~a~ 98 (100)
T cd01226 77 RIYQCESARIKTEWFEELEQAK 98 (100)
T ss_pred EEEEeCCHHHHHHHHHHHHHHh
Confidence 9999999999999999996653
No 81
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=91.33 E-value=0.094 Score=60.48 Aligned_cols=103 Identities=22% Similarity=0.412 Sum_probs=64.7
Q ss_pred CCCccccchhhcccCC---CCCcccceeeeecCCcccccccchhhhhc-cceeecCccccccccccccccCchhhhhccc
Q 004370 418 PGGEITAGFLLKKSSK---TNGWSKRWFVLNEKTGKLGYTKKQEERHF-RGVVTLEECYIEEVVEDEDAKSSKDKKKQAE 493 (758)
Q Consensus 418 ~~~~i~~GwL~K~g~~---~~~WkkRWFVL~~~sg~L~YyK~~~ek~~-kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~ 493 (758)
.+-.+.+|-|.-+-++ .+.|+-|||.|.+-. |.|-|......- ...|.|.. |+.+..- ++ |+. +
T Consensus 732 ~gqp~iEGQLKEKKGrWRf~kRW~TrYFTLSgA~--L~~~kg~s~~dS~~~~IDl~~--IRSVk~v----~~--kr~--~ 799 (851)
T KOG3723|consen 732 DGQPLIEGQLKEKKGRWRFIKRWKTRYFTLSGAQ--LLFQKGKSKDDSDDCPIDLSK--IRSVKAV----AK--KRR--D 799 (851)
T ss_pred CCCchhcchhhhhccchhhhhhhccceEEecchh--hhcccCCCCCCCCCCCccHHH--hhhHHHH----Hh--hhh--h
Confidence 3334888999754333 578999999999875 888664331111 13344432 2222211 00 010 1
Q ss_pred CCCceEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHhh
Q 004370 494 KGPSLIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 494 ~~~~~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~~ 541 (758)
..-+-.|.|++.+ ++|+|+|.++...++|+..|.-++..
T Consensus 800 rslpKAFEIFTAD---------~T~ILKaKDeKNAEEWlqCL~IavAH 838 (851)
T KOG3723|consen 800 RSLPKAFEIFTAD---------KTYILKAKDEKNAEEWLQCLNIAVAH 838 (851)
T ss_pred cccchhhheeecC---------ceEEeecccccCHHHHHHHHHHHHHH
Confidence 1234469999986 78999999999999999999665554
No 82
>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain. Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=90.96 E-value=0.22 Score=46.92 Aligned_cols=58 Identities=26% Similarity=0.411 Sum_probs=43.1
Q ss_pred cceeecCccccccccccccccCchhhhhcccCCCceEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHh
Q 004370 463 RGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPSLIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQ 540 (758)
Q Consensus 463 kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~ 540 (758)
|..|.+.++.+++..++ .++.|.|.+..+.+ ...+|.|.|.|.++++.|+..|+.+..
T Consensus 56 K~~ikls~l~l~e~v~g----------------d~~kF~i~~~~~~~----~~~~~ilqA~s~e~K~~W~~~I~~il~ 113 (114)
T cd01232 56 KSKLQVSKMGLTEHVEG----------------DPCRFALWSGDPPI----SDNRIILKANSQETKQEWVKKIREILQ 113 (114)
T ss_pred ecceeeeeeEeEEccCC----------------CCceEEEEeCCCCC----CceEEEEECCCHHHHHHHHHHHHHHhh
Confidence 57788888877665443 35678887664211 236899999999999999999998764
No 83
>cd01248 PH_PLC Phospholipase C (PLC) pleckstrin homology (PH) domain. Phospholipase C (PLC) pleckstrin homology (PH) domain. There are several isozymes of PLC (beta, gamma, delta, epsilon. zeta). While, PLC beta, gamma and delta all have N-terminal PH domains, lipid binding specificity is not conserved between them. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=90.73 E-value=0.34 Score=45.20 Aligned_cols=91 Identities=22% Similarity=0.210 Sum_probs=56.0
Q ss_pred Ccc-cceeeeecCCcccccccchhhhhccceeecCccc-cccccccccccCchhhhhccc---CCCceEEEEeccCcchh
Q 004370 436 GWS-KRWFVLNEKTGKLGYTKKQEERHFRGVVTLEECY-IEEVVEDEDAKSSKDKKKQAE---KGPSLIFKITSKVPYKT 510 (758)
Q Consensus 436 ~Wk-kRWFVL~~~sg~L~YyK~~~ek~~kG~I~L~~~~-v~~~~~~~~~~s~k~~~~np~---~~~~~~F~I~t~~~~k~ 510 (758)
.+. +|-|.|+.+.+.|+|..... ...+.|+|+..+ |+..... +..+. ..... .....+|+|.....
T Consensus 19 ~~~~~~~f~ld~~~~~l~W~~~~~--~~~~~l~i~~IkeIR~G~~~---k~~~~-~~~~~~~~~~e~~~fTIiy~~~--- 89 (115)
T cd01248 19 SRERRRLFRLDEKGFFLYWKDEGK--KEKKVLDISSIKEIRTGKQP---KDLKL-RAELNQGNSLEERCFTIVYGTD--- 89 (115)
T ss_pred CceeeEEEEEcCCCcEEEEeCCCC--ccccEEEehhhhhhhCCCCC---cchHH-hhhhhcCCCccccEEEEEECCC---
Confidence 354 46688988887888875322 145567776543 3332211 11111 01111 13467899987641
Q ss_pred hhhhhhhhhhhccChHHHHHHHHhhHH
Q 004370 511 VLKAHSALLLKAENMAEKFEWLNKLRV 537 (758)
Q Consensus 511 v~k~~r~~~L~AeS~eE~~~Wv~aiRa 537 (758)
. +.+++.|.|+|.++.+.|+..|++
T Consensus 90 -~-~~k~L~lVA~s~~~a~~W~~gL~~ 114 (115)
T cd01248 90 -L-NLKSLDLVAPSEEEAKTWVSGLRK 114 (115)
T ss_pred -C-CeeEEEEEECCHHHHHHHHHHHhh
Confidence 1 368899999999999999999875
No 84
>PF15404 PH_4: Pleckstrin homology domain
Probab=90.31 E-value=0.27 Score=50.14 Aligned_cols=50 Identities=24% Similarity=0.388 Sum_probs=38.7
Q ss_pred ccchhhcccCCCCCcccceeeeecCCcccccccchh-----------hhhccceeecCccccc
Q 004370 423 TAGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQE-----------ERHFRGVVTLEECYIE 474 (758)
Q Consensus 423 ~~GwL~K~g~~~~~WkkRWFVL~~~sg~L~YyK~~~-----------ek~~kG~I~L~~~~v~ 474 (758)
.+|+|+.+..+...|+++++||.. |.|.-|+.-. ..+..-+|+|.+|-|=
T Consensus 1 ~sG~LY~K~~khs~F~~~~vvL~~--G~Li~f~~~~Rs~tG~~~~~~~~~~~~tI~L~dcYvY 61 (185)
T PF15404_consen 1 MSGYLYQKPRKHSTFKKYFVVLIP--GFLILFQLFKRSRTGFAKPTVHYEHYLTIPLRDCYVY 61 (185)
T ss_pred CCceeeecCCCCCCceEEEEEEeC--CEEEEEEEEeeccCCcccceEEeEeeeeeccCCceEE
Confidence 369999998888999999999995 5688887632 2233578999888763
No 85
>cd05135 RasGAP_RASAL Ras GTPase activating-like protein (RASAL) or RASAL1 is a member of the GAP1 family, and a Ca2+ sensor responding in-phase to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. It contains a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. RASAL, like Ca2+ -promoted Ras inactivator (CAPRI, or RASAL4), is a cytosolic protein that undergoes a rapid translocation to the plasma membrane in response to receptor-mediated elevation in the concentration of intracellular free Ca2+, a translocation that activates its ability to function as a RasGAP. However, unlike RASAL4, RASAL undergoes an oscillatory translocation to the plasma membrane that occurs in synchrony with repetitive Ca2+ spikes.
Probab=89.98 E-value=14 Score=41.23 Aligned_cols=75 Identities=12% Similarity=0.157 Sum_probs=43.0
Q ss_pred CCCCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 004370 251 QPYLISPEKGLRSLIKSVLEMAKEPSRLCVDEVHRVLVDIVSAAANATPGLGRYPPFKREVVEIASAALDRFKSDAKKMV 330 (758)
Q Consensus 251 ~~~lf~P~~afe~Lik~qi~~~~~Pa~~cvd~V~~~L~~iv~~~~~~t~~l~rfP~L~~~i~~iv~~~L~~~~~~a~~~v 330 (758)
.|...+|+ .|. |+..+ ...-+.+.+..|...|.++.+. ...| ..-++.-..-+++++.+.....++.+
T Consensus 211 ~PAIvsP~-~f~-l~~~~---~~~~~rR~L~lIAKvLQnlAN~----~~~f---~~~KE~~M~pln~Fi~~~~~~v~~FL 278 (333)
T cd05135 211 APAILTPK-LFQ-LREQH---ADPRTSRTLLLLAKAVQSIGNL----GQQL---GQGKEQWMAPLHPFIRQSVARVRDFL 278 (333)
T ss_pred ccccCCcc-ccC-ccCCC---CCHHHHHHHHHHHHHHHHHHcc----CCcC---CCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 57777775 443 23222 2233556666666666666541 1112 22345556667788888888777777
Q ss_pred HHHHHHh
Q 004370 331 VALVDME 337 (758)
Q Consensus 331 ~~Lid~E 337 (758)
..+++.+
T Consensus 279 ~~l~~V~ 285 (333)
T cd05135 279 DRLIDID 285 (333)
T ss_pred HHHcCCC
Confidence 7776543
No 86
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=87.61 E-value=0.56 Score=56.67 Aligned_cols=85 Identities=19% Similarity=0.322 Sum_probs=63.7
Q ss_pred CCcccceeeeecCCcccccccchhhhhccceeecCccccccccccccccCchhhhhcccCCCceEEEEeccCcchhhhhh
Q 004370 435 NGWSKRWFVLNEKTGKLGYTKKQEERHFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPSLIFKITSKVPYKTVLKA 514 (758)
Q Consensus 435 ~~WkkRWFVL~~~sg~L~YyK~~~ek~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~~~F~I~t~~~~k~v~k~ 514 (758)
.-..++|+||-+ |.|+||.++....|-|.|++.+...-.+.... ..|.....|+|.|..+.
T Consensus 516 Ee~nr~wcVlg~--g~ls~fen~~S~tP~~lI~~~Eivclav~~pd---------~~pn~~~~f~fE~~l~~-------- 576 (1186)
T KOG1117|consen 516 EETNRKWCVLGG--GFLSYFENEKSTTPNGLININEIVCLAVHPPD---------TYPNTGFIFIFEIYLPG-------- 576 (1186)
T ss_pred ccCCCceEEcCc--chhhhhhhcCCCCCCceeeccceEEEeecCCC---------CCCCcCceeEEEEeecc--------
Confidence 346689999985 46999999999999999999764432221110 01233567899999875
Q ss_pred hhhhhhhccChHHHHHHHHhhHHH
Q 004370 515 HSALLLKAENMAEKFEWLNKLRVV 538 (758)
Q Consensus 515 ~r~~~L~AeS~eE~~~Wv~aiRa~ 538 (758)
.|.|.+.+++.++...|..++-+.
T Consensus 577 er~~~fgle~ad~l~~wt~aiaKh 600 (1186)
T KOG1117|consen 577 ERVFLFGLETADALRKWTEAIAKH 600 (1186)
T ss_pred cceEEeecccHHHHHHHHHHHHHh
Confidence 689999999999999999998443
No 87
>cd01228 PH_BCR-related BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. The BCR-related protein has a RhoGEF(DH) domain followed by a PH domain, a C2 domain and a RhoGAP domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=86.08 E-value=0.43 Score=43.50 Aligned_cols=82 Identities=15% Similarity=0.249 Sum_probs=50.6
Q ss_pred cccchhhcccCCCCCcccceeeeecCCcccccccch---hhh----hccceeecCccccccccccccccCchhhhhcccC
Q 004370 422 ITAGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQ---EER----HFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEK 494 (758)
Q Consensus 422 i~~GwL~K~g~~~~~WkkRWFVL~~~sg~L~YyK~~---~ek----~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~ 494 (758)
+++|+|.|-.-. ..=-|..|-+++- |.|-+=. ..+ +.+-.|||+++.+..++
T Consensus 4 v~eg~lvel~~~-~rK~R~~FLFnDl---Lvc~~ik~~~~~k~~kY~~~w~IPL~dl~~~~~~----------------- 62 (96)
T cd01228 4 VKDSFLVELVEG-SRKLRHLFLFTDV---LLCAKLKKTSRGKHQQYDCKWYIPLADLSFPSEP----------------- 62 (96)
T ss_pred cccceeeeehhC-CCcceEEEeeccE---EEEEEeeeccCccccccceeEEEEhHHheecchh-----------------
Confidence 567888777421 1122455555542 6554421 112 23458999888776542
Q ss_pred CCceEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHH
Q 004370 495 GPSLIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRV 537 (758)
Q Consensus 495 ~~~~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa 537 (758)
|.+.++ +.++|.+.|.|..|+.+|+.+|+.
T Consensus 63 -----~~~~~~--------~~KSf~~~asS~~Er~eW~~hI~~ 92 (96)
T cd01228 63 -----FRIHNK--------NGKSYTFLLSSDYERSEWRESIQK 92 (96)
T ss_pred -----hhcccc--------CCceEEEEecCHHHHHHHHHHHHH
Confidence 222222 258999999999999999999965
No 88
>KOG0248 consensus Cytoplasmic protein Max-1, contains PH, MyTH4 and FERM domains [Cytoskeleton]
Probab=85.67 E-value=1 Score=53.43 Aligned_cols=50 Identities=2% Similarity=-0.116 Sum_probs=39.4
Q ss_pred cccchhhcccCCCCCcccceeeeecCCcccccccchhhhhccceeecCcccc
Q 004370 422 ITAGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQEERHFRGVVTLEECYI 473 (758)
Q Consensus 422 i~~GwL~K~g~~~~~WkkRWFVL~~~sg~L~YyK~~~ek~~kG~I~L~~~~v 473 (758)
-+-|||.|..++.+.||.|||++.++ .+.||+.+-+....-.|.-.+|.+
T Consensus 260 s~~k~lkrr~~v~k~gqi~~y~~~~~--~~~~p~s~~d~~s~~~~~~~~~s~ 309 (936)
T KOG0248|consen 260 SRIKSLKRRYVVFKNGQISFYRKHNN--RDEEPASKIDIRSVTKLEQQGAAY 309 (936)
T ss_pred HHHHHHHhHheeeccceEEEEEcCCC--ccccccCcccccccceeeccchhH
Confidence 67799999999999999999999876 599999998654444443366654
No 89
>cd05128 RasGAP_GAP1_like The GAP1 family of Ras GTPase-activating proteins includes GAP1(m) (or RASA2), GAP1_IP4BP (or RASA3), Ca2+ -promoted Ras inactivator (CAPRI, or RASAL4), and Ras GTPase activating-like proteins (RASAL) or RASAL1. The members are characterized by a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin homology domain that is associated with a Bruton's tyrosine kinase motif. While this domain structure is conserved, a small change in the function of each individual domain and the interaction between domains has a marked effect on the regulation of each protein.
Probab=85.62 E-value=7.5 Score=42.97 Aligned_cols=24 Identities=29% Similarity=0.724 Sum_probs=19.1
Q ss_pred cccchhhccc-----CCCCCcccceeeee
Q 004370 422 ITAGFLLKKS-----SKTNGWSKRWFVLN 445 (758)
Q Consensus 422 i~~GwL~K~g-----~~~~~WkkRWFVL~ 445 (758)
+++|+|.|+. ....+||||||.|+
T Consensus 287 ~k~g~~~~~~~~~~~~~~~~~k~r~~~lt 315 (315)
T cd05128 287 LKEGFMIKRAQGRGRLGRKNFKKRYFRLT 315 (315)
T ss_pred hhhhhhHhhcccCCCccccchhheeeecC
Confidence 8999998873 12468999999985
No 90
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=85.37 E-value=1.2 Score=51.83 Aligned_cols=37 Identities=35% Similarity=0.676 Sum_probs=31.7
Q ss_pred cccchhhcccCC--CCCcccceeeeecCCcccccccchhh
Q 004370 422 ITAGFLLKKSSK--TNGWSKRWFVLNEKTGKLGYTKKQEE 459 (758)
Q Consensus 422 i~~GwL~K~g~~--~~~WkkRWFVL~~~sg~L~YyK~~~e 459 (758)
|++|.|.|++++ .+.|||.+..|..+ |+|.||-+-.|
T Consensus 303 IKQg~LlKrSgk~L~keWKKKYVtlcsn-G~LtYh~sL~d 341 (749)
T KOG0705|consen 303 IKQGMLLKRSGKSLNKEWKKKYVTLCSN-GVLTYHPSLGD 341 (749)
T ss_pred hhhhhHHHhcchHHHHHHhhhheeeccC-cceeecccHHH
Confidence 999999999876 37899999999876 69999976654
No 91
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=81.82 E-value=1.4 Score=43.32 Aligned_cols=54 Identities=24% Similarity=0.328 Sum_probs=35.3
Q ss_pred CeEEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCCcchhHHHHHHHHHcC
Q 004370 14 DAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAEGDSKALAAVRALLLN 74 (758)
Q Consensus 14 ntIILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd~gt~~~~~~~~iL~n 74 (758)
-.+||.|.+|+ +-.+.-.-..|+-+ ..+.||||||+|+.....+. +...+.|..
T Consensus 64 ad~V~ll~dat---~~~~~~pP~fa~~f---~~pvIGVITK~Dl~~~~~~i-~~a~~~L~~ 117 (143)
T PF10662_consen 64 ADVVLLLQDAT---EPRSVFPPGFASMF---NKPVIGVITKIDLPSDDANI-ERAKKWLKN 117 (143)
T ss_pred CCEEEEEecCC---CCCccCCchhhccc---CCCEEEEEECccCccchhhH-HHHHHHHHH
Confidence 35778888888 55555555666666 36899999999999433332 234445554
No 92
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=79.00 E-value=2.2 Score=42.22 Aligned_cols=55 Identities=9% Similarity=0.247 Sum_probs=35.6
Q ss_pred HHHHHhcCCCC--eEEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCCcc
Q 004370 4 AMISKYVERSD--AVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAEGD 61 (758)
Q Consensus 4 ~mV~~YI~~~n--tIILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd~g 61 (758)
.|+..|+.... ..||.|+.+++ .+..++. .+.+.++..|...|.|+||+|+++..
T Consensus 89 ~~~~~~l~~~~~~~~ii~vvd~~~--~~~~~~~-~~~~~~~~~~~pviiv~nK~D~~~~~ 145 (179)
T TIGR03598 89 KLIEEYLEKRENLKGVVLLMDIRH--PLKELDL-EMLEWLRERGIPVLIVLTKADKLKKS 145 (179)
T ss_pred HHHHHHHHhChhhcEEEEEecCCC--CCCHHHH-HHHHHHHHcCCCEEEEEECcccCCHH
Confidence 35667886532 23444556664 4544443 44555666789999999999999643
No 93
>cd01223 PH_Vav Vav pleckstrin homology (PH) domain. Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=76.22 E-value=3.3 Score=39.31 Aligned_cols=65 Identities=12% Similarity=0.251 Sum_probs=44.6
Q ss_pred hccceeecCccccccccccccccCchhhhhcccCCCceEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHh
Q 004370 461 HFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPSLIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQ 540 (758)
Q Consensus 461 ~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~ 540 (758)
.++-.+.|..+.|++...... .+ .++..++.|.|.+.+ ....|.|.|-|++++..|+++|-.++.
T Consensus 48 ~~Ke~~~l~~~~I~~~~~~d~-~~-------~~~~~~~~f~L~~~~-------~~~~~~f~~Ktee~K~kWm~al~~a~s 112 (116)
T cd01223 48 TYKDIHDLADYKIENNPSRDT-EG-------RDTRWKYGFYLAHKQ-------GKTGFTFYFKTEHLRKKWLKALEMAMS 112 (116)
T ss_pred EhHHhhhhheeeeEecCccCc-cc-------CCcceEEEEEEEecC-------CCccEEEEeCCHHHHHHHHHHHHHHHh
Confidence 345567777777765432210 00 123478899999875 246799999999999999999976654
No 94
>cd05395 RasGAP_RASA4 Ras GTPase activating-like 4 protein (RASAL4), also known as Ca2+ -promoted Ras inactivator (CAPRI), is a member of the GAP1 family. Members of the GAP1 family are characterized by a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. RASAL4, like RASAL, is a cytosolic protein that undergoes a rapid translocation to the plasma membrane in response to a receptor-mediated elevation in the concentration of intracellular free Ca2+ ([Ca2+]i). However, unlike RASAL, RASAL4 does not sense oscillations in [Ca2+]i.
Probab=74.68 E-value=58 Score=36.47 Aligned_cols=74 Identities=15% Similarity=0.168 Sum_probs=45.9
Q ss_pred CCCCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCc-chHHHHHHHHHHHHHHHHHHHHHH
Q 004370 251 QPYLISPEKGLRSLIKSVLEMAKEPSRLCVDEVHRVLVDIVSAAANATPGLGRYP-PFKREVVEIASAALDRFKSDAKKM 329 (758)
Q Consensus 251 ~~~lf~P~~afe~Lik~qi~~~~~Pa~~cvd~V~~~L~~iv~~~~~~t~~l~rfP-~L~~~i~~iv~~~L~~~~~~a~~~ 329 (758)
.|...+|+ .|. |+.. .....+.+-+..|...|.++.+. ..|. .-++.-..-++.+|++.....+++
T Consensus 210 cPAIvSP~-~f~-L~~~---~p~~~~rR~LtLIAKvLQnLAN~--------~~f~~~~KE~~M~plN~FI~~~~~~~~~F 276 (337)
T cd05395 210 SPAIMSPK-LFH-LREK---HADARTSRTLLLLAKAVQTVGNM--------DTLACRAKEPWMVPLQPAIQQGITQLKDF 276 (337)
T ss_pred ccccCCch-hcC-ccCC---CCCHHHHhHHHHHHHHHHHHhCc--------CccCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 57777775 443 3322 22334556677776666666542 2232 346667778888998888888888
Q ss_pred HHHHHHHh
Q 004370 330 VVALVDME 337 (758)
Q Consensus 330 v~~Lid~E 337 (758)
+..|++.+
T Consensus 277 L~~i~~v~ 284 (337)
T cd05395 277 ITRLVNCE 284 (337)
T ss_pred HHHHhCCC
Confidence 88776544
No 95
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=74.08 E-value=4.8 Score=47.24 Aligned_cols=97 Identities=12% Similarity=0.101 Sum_probs=69.4
Q ss_pred cchhhcccCCCCCcccceeeeec-CCcccccccchhhhhccceeecCccccccccccccccCchhhhhcccCCCceEEEE
Q 004370 424 AGFLLKKSSKTNGWSKRWFVLNE-KTGKLGYTKKQEERHFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPSLIFKI 502 (758)
Q Consensus 424 ~GwL~K~g~~~~~WkkRWFVL~~-~sg~L~YyK~~~ek~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~~~F~I 502 (758)
-+.|.+.-.....|+.-|+|.-. +.-.++-|-.+.|-...-+|||.+|.+...+... . ....+.|++
T Consensus 500 ~s~l~~~~~~~~~g~~a~~~vP~~d~~~~~~Yg~~qDv~a~~~iPl~~~~v~~pe~~~---~---------~D~~~~~k~ 567 (623)
T KOG4424|consen 500 CSHLKYMEAAGKTGILAWSVVPKSDPLVDYSYGSPQDVRAQATIPLPGVEVTIPEFVR---R---------EDLFHVFKL 567 (623)
T ss_pred hhhHHHHhhcCccceeeeeeccCCCCccccccCCccccccccccccCccccCCCcccc---c---------chhcchhhh
Confidence 34444443355679999999852 3346889999999989999999999886443321 1 124556665
Q ss_pred eccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHhh
Q 004370 503 TSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 503 ~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~~ 541 (758)
+. .|..++|.|++++-...|++-|--++.+
T Consensus 568 ~~---------s~~~~~~~a~~~q~qq~wl~~l~~A~~~ 597 (623)
T KOG4424|consen 568 VQ---------SHLSWHLAADDEQLQQRWLEVLLLAVSG 597 (623)
T ss_pred hh---------hcceeeeccCCHHHHHHHHHHHHhhhcc
Confidence 54 3688999999999999999999555544
No 96
>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=74.06 E-value=3.8 Score=39.81 Aligned_cols=39 Identities=23% Similarity=0.386 Sum_probs=32.5
Q ss_pred CceEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHhh
Q 004370 496 PSLIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 496 ~~~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~~ 541 (758)
..+.|.|.+.. ....|+|.|.|.+.++.|+..|+.++..
T Consensus 79 d~~kFeiw~~~-------~~~~yilqA~t~e~K~~Wv~~I~~iL~~ 117 (133)
T cd01227 79 DTKKFEIWYNA-------REEVYILQAPTPEIKAAWVNEIRKVLTS 117 (133)
T ss_pred CccEEEEEeCC-------CCcEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 35678888764 1368999999999999999999988875
No 97
>cd01231 PH_Lnk LNK-family Pleckstrin homology (PH) domain. LNK-family Pleckstrin homology (PH) domain. The Lnk family of proteins consists of Lnk, APS and SH2B. They are adaptor proteins consisting of a PH domain and an SH2 domain, which mediates signaling through growth factor receptors. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. The lnk family PH domain is likely involved in targeting of the adaptor proteins to the plasma membrane.
Probab=68.25 E-value=5.2 Score=37.10 Aligned_cols=84 Identities=18% Similarity=0.314 Sum_probs=49.5
Q ss_pred CcccceeeeecCCc--ccccccc--hhhhhccceeecCccccccccccccccCchhhhhcccCCCceEEEEeccCcchhh
Q 004370 436 GWSKRWFVLNEKTG--KLGYTKK--QEERHFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPSLIFKITSKVPYKTV 511 (758)
Q Consensus 436 ~WkkRWFVL~~~sg--~L~YyK~--~~ek~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~~~F~I~t~~~~k~v 511 (758)
.|+|.=.||....| .|.+|-. |+...|+-.|+... |.++-... .+-.|| +.+.|.+.-.+
T Consensus 20 ~WqkcRl~L~~~~gg~~le~~~~~pPKssrpk~~v~C~~--I~EvR~tt-------~LEmPD--~~nTFvLK~~~----- 83 (107)
T cd01231 20 RWQRGRLVLRKAVGGYMLEFYLPLPPKSSKPKLQVACSS--ISEVRECT-------RLEMPD--NLYTFVLKVDD----- 83 (107)
T ss_pred ccceeeEEEEecCCCceEEEEccCCCCCCCCccccchhh--hhhhhhcc-------cccccC--cccEEEEEecC-----
Confidence 48887777753221 2444444 56666666665532 22221110 011244 45566665432
Q ss_pred hhhhhhhhhhccChHHHHHHHHhhHHH
Q 004370 512 LKAHSALLLKAENMAEKFEWLNKLRVV 538 (758)
Q Consensus 512 ~k~~r~~~L~AeS~eE~~~Wv~aiRa~ 538 (758)
.-.|+|-|.+.+++.+|++.||.|
T Consensus 84 ---~~eyI~Ea~d~~q~~SWla~Ir~C 107 (107)
T cd01231 84 ---NTDIIFEVGDEQQLNSWLAELRYC 107 (107)
T ss_pred ---CceEEEEcCCHHHHHHHHHHHhcC
Confidence 357999999999999999999854
No 98
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=66.50 E-value=8.6 Score=35.18 Aligned_cols=55 Identities=13% Similarity=0.233 Sum_probs=36.1
Q ss_pred HHHHHhcCCCCeEEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCCcch
Q 004370 4 AMISKYVERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAEGDS 62 (758)
Q Consensus 4 ~mV~~YI~~~ntIILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd~gt 62 (758)
.+...++...+.|++++-+.+. +..... .+.......+...|.|+||.|++....
T Consensus 67 ~~~~~~~~~~d~il~v~~~~~~--~~~~~~--~~~~~~~~~~~~~ivv~nK~D~~~~~~ 121 (163)
T cd00880 67 ELARRVLERADLILFVVDADLR--ADEEEE--KLLELLRERGKPVLLVLNKIDLLPEEE 121 (163)
T ss_pred HHHHHHHHhCCEEEEEEeCCCC--CCHHHH--HHHHHHHhcCCeEEEEEEccccCChhh
Confidence 4667788889877776666553 222222 233333345688999999999997544
No 99
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=66.20 E-value=7.3 Score=38.97 Aligned_cols=53 Identities=11% Similarity=0.110 Sum_probs=34.1
Q ss_pred HHHHHHhcCCCCeEEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCCcc
Q 004370 3 DAMISKYVERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAEGD 61 (758)
Q Consensus 3 ~~mV~~YI~~~ntIILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd~g 61 (758)
++++..|+.+-+ +||.|+.+. |...+....+.... .+...|-|+||.|+.++.
T Consensus 25 ~~~l~~~~~~ad-~il~VvD~~---~~~~~~~~~l~~~~--~~~~~ilV~NK~Dl~~~~ 77 (190)
T cd01855 25 LNLLSSISPKKA-LVVHVVDIF---DFPGSLIPRLRLFG--GNNPVILVGNKIDLLPKD 77 (190)
T ss_pred HHHHHhcccCCc-EEEEEEECc---cCCCccchhHHHhc--CCCcEEEEEEchhcCCCC
Confidence 678889987777 555556665 44333333332222 457899999999998643
No 100
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=64.77 E-value=8.4 Score=37.39 Aligned_cols=53 Identities=15% Similarity=0.188 Sum_probs=34.7
Q ss_pred HHHHHhcCCCCeEEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCCc
Q 004370 4 AMISKYVERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 4 ~mV~~YI~~~ntIILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd~ 60 (758)
.++..|+..-+++||++-+.+ .. ....+.........|...|.|+||+|+.+.
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~---~~-~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~ 134 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQ---GV-EAQTLANFYLALENNLEIIPVINKIDLPSA 134 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCC---Cc-cHhhHHHHHHHHHcCCCEEEEEECCCCCcC
Confidence 567889999998888775443 22 222233333333457789999999999753
No 101
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=64.64 E-value=6.6 Score=36.82 Aligned_cols=56 Identities=13% Similarity=0.250 Sum_probs=36.1
Q ss_pred HHHHHhcCCCCeE--EEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCCcch
Q 004370 4 AMISKYVERSDAV--LLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAEGDS 62 (758)
Q Consensus 4 ~mV~~YI~~~ntI--ILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd~gt 62 (758)
.++..|+...+.+ ++.|+.+.. ..+..-..+.+.++..+...|-|+||+|++.++.
T Consensus 70 ~~~~~~~~~~~~~~~~~~v~d~~~---~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~~~ 127 (170)
T cd01876 70 KLIEEYLENRENLKGVVLLIDSRH---GPTEIDLEMLDWLEELGIPFLVVLTKADKLKKSE 127 (170)
T ss_pred HHHHHHHHhChhhhEEEEEEEcCc---CCCHhHHHHHHHHHHcCCCEEEEEEchhcCChHH
Confidence 4667788776543 445555552 2233444555566656678899999999987654
No 102
>cd05394 RasGAP_RASA2 RASA2 (or GAP1(m)) is a member of the GAP1 family of Ras GTPase-activating proteins that includes GAP1_IP4BP (or RASA3), CAPRI, and RASAL. In vitro, RASA2 has been shown to bind inositol 1,3,4,5-tetrakisphosphate (IP4), the water soluble inositol head group of the lipid second messenger phosphatidylinositol 3,4,5-trisphosphate (PIP3). In vivo studies also demonstrated that RASA2 binds PIP3, and it is recruited to the plasma membrane following agonist stimulation of PI 3-kinase. Furthermore, the membrane translocation is a consequence of the ability of its pleckstrin homology (PH) domain to bind PIP3.
Probab=64.45 E-value=3.9 Score=45.06 Aligned_cols=24 Identities=29% Similarity=0.749 Sum_probs=19.4
Q ss_pred cccchhhccc--CC---CCCcccceeeee
Q 004370 422 ITAGFLLKKS--SK---TNGWSKRWFVLN 445 (758)
Q Consensus 422 i~~GwL~K~g--~~---~~~WkkRWFVL~ 445 (758)
+++|+|.|+. .. .++||||||.|+
T Consensus 284 ~~e~~~~~r~~~~~~~~~~~~kkr~~~l~ 312 (313)
T cd05394 284 LKEGEMYKRAQGRTRIGKKNFKKRWFCLT 312 (313)
T ss_pred hHHHHHHhhccCCCccccccchhheeecC
Confidence 8999999883 21 457999999997
No 103
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=64.41 E-value=6.1 Score=38.10 Aligned_cols=54 Identities=17% Similarity=0.252 Sum_probs=34.8
Q ss_pred HHHHHHhcCCCCeEEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCCc
Q 004370 3 DAMISKYVERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 3 ~~mV~~YI~~~ntIILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd~ 60 (758)
+.|++.++.+-+.|| .|+.+. +..++.-..+.+.+...|...|-|+||.|+.+.
T Consensus 3 ~~~~~~i~~~aD~vl-~V~D~~---~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~ 56 (156)
T cd01859 3 KRLVRRIIKESDVVL-EVLDAR---DPELTRSRKLERYVLELGKKLLIVLNKADLVPK 56 (156)
T ss_pred HHHHHHHHhhCCEEE-EEeeCC---CCcccCCHHHHHHHHhCCCcEEEEEEhHHhCCH
Confidence 568888888777555 456665 332222234444444457889999999999753
No 104
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=63.49 E-value=12 Score=35.43 Aligned_cols=62 Identities=35% Similarity=0.391 Sum_probs=37.4
Q ss_pred HhcCCCCeEEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCCcchhHHHHHHHHHc
Q 004370 8 KYVERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAEGDSKALAAVRALLL 73 (758)
Q Consensus 8 ~YI~~~ntIILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd~gt~~~~~~~~iL~ 73 (758)
.++...+.+|+++ .++ +..+...+.+.+.+...+...|-|+||+|+++......+.+.+.+.
T Consensus 80 ~~~~~~d~vi~v~-d~~---~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~ 141 (174)
T cd01895 80 KAIERADVVLLVI-DAT---EGITEQDLRIAGLILEEGKALVIVVNKWDLVEKDSKTMKEFKKEIR 141 (174)
T ss_pred HHHhhcCeEEEEE-eCC---CCcchhHHHHHHHHHhcCCCEEEEEeccccCCccHHHHHHHHHHHH
Confidence 3455666666665 455 3334455566666555678899999999999764222233344443
No 105
>PRK00089 era GTPase Era; Reviewed
Probab=62.60 E-value=80 Score=33.81 Aligned_cols=51 Identities=18% Similarity=0.216 Sum_probs=30.9
Q ss_pred HHHHhcCCCCeEEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCC
Q 004370 5 MISKYVERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAE 59 (758)
Q Consensus 5 mV~~YI~~~ntIILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd 59 (758)
.+..++..-++|+++| +++. .+.. ....+.+.+-..+...|-|+||+|+.+
T Consensus 77 ~~~~~~~~~D~il~vv-d~~~--~~~~-~~~~i~~~l~~~~~pvilVlNKiDl~~ 127 (292)
T PRK00089 77 AAWSSLKDVDLVLFVV-DADE--KIGP-GDEFILEKLKKVKTPVILVLNKIDLVK 127 (292)
T ss_pred HHHHHHhcCCEEEEEE-eCCC--CCCh-hHHHHHHHHhhcCCCEEEEEECCcCCC
Confidence 3455777888777665 4442 2222 223333333334678999999999984
No 106
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=62.07 E-value=93 Score=33.13 Aligned_cols=50 Identities=14% Similarity=0.056 Sum_probs=30.2
Q ss_pred HHHhcCCCCeEEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCCc
Q 004370 6 ISKYVERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 6 V~~YI~~~ntIILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd~ 60 (758)
+..++...+.||++ +.++. ....+ ..+...+...+...|-|+||+|+.++
T Consensus 73 ~~~~l~~aDvvl~V-vD~~~---~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~~~ 122 (270)
T TIGR00436 73 ARSAIGGVDLILFV-VDSDQ---WNGDG-EFVLTKLQNLKRPVVLTRNKLDNKFK 122 (270)
T ss_pred HHHHHhhCCEEEEE-EECCC---CCchH-HHHHHHHHhcCCCEEEEEECeeCCCH
Confidence 45678877866665 55552 22211 22333333346789999999999853
No 107
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=61.48 E-value=11 Score=35.35 Aligned_cols=52 Identities=17% Similarity=0.254 Sum_probs=33.2
Q ss_pred HHHHHHhcC--CCCeEEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCCc
Q 004370 3 DAMISKYVE--RSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 3 ~~mV~~YI~--~~ntIILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd~ 60 (758)
..|...|+. +.+++|+++ .+. +..+ ...+..++...+...|.|+||.|+.+.
T Consensus 63 ~~~~~~~~~~~~~d~vi~v~-d~~---~~~~--~~~~~~~~~~~~~~~iiv~NK~Dl~~~ 116 (158)
T cd01879 63 EKVARDFLLGEKPDLIVNVV-DAT---NLER--NLYLTLQLLELGLPVVVALNMIDEAEK 116 (158)
T ss_pred HHHHHHHhcCCCCcEEEEEe-eCC---cchh--HHHHHHHHHHcCCCEEEEEehhhhccc
Confidence 356778886 667666654 445 3332 123343444457889999999999864
No 108
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=61.23 E-value=44 Score=37.82 Aligned_cols=48 Identities=31% Similarity=0.282 Sum_probs=34.2
Q ss_pred HHhcCCCCeEEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCC
Q 004370 7 SKYVERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQA 58 (758)
Q Consensus 7 ~~YI~~~ntIILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlm 58 (758)
..++..-+.+||++-... -.+..-+++++.+.-.|...|-|++|.|+.
T Consensus 249 ~~~~~~ad~~ilV~D~~~----~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~ 296 (429)
T TIGR03594 249 LKAIERADVVLLVLDATE----GITEQDLRIAGLILEAGKALVIVVNKWDLV 296 (429)
T ss_pred HHHHHhCCEEEEEEECCC----CccHHHHHHHHHHHHcCCcEEEEEECcccC
Confidence 457888887777665433 233344566666666789999999999999
No 109
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=61.04 E-value=18 Score=36.03 Aligned_cols=50 Identities=20% Similarity=0.293 Sum_probs=35.6
Q ss_pred HHHhcCCCCeEEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCC
Q 004370 6 ISKYVERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAE 59 (758)
Q Consensus 6 V~~YI~~~ntIILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd 59 (758)
+..-+...+++||+|-+... +...+.+.+++++... ...|-||||+|+..
T Consensus 87 ~~~~~~~~D~ailvVda~~g-~~~~~~~~l~~~~~~~---~p~ivvlNK~D~~~ 136 (188)
T PF00009_consen 87 MIRGLRQADIAILVVDANDG-IQPQTEEHLKILRELG---IPIIVVLNKMDLIE 136 (188)
T ss_dssp HHHHHTTSSEEEEEEETTTB-STHHHHHHHHHHHHTT----SEEEEEETCTSSH
T ss_pred ccceecccccceeeeecccc-cccccccccccccccc---cceEEeeeeccchh
Confidence 33447788877776655442 5666777788888875 45999999999994
No 110
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=59.19 E-value=8.3 Score=46.98 Aligned_cols=60 Identities=20% Similarity=0.451 Sum_probs=42.9
Q ss_pred cceeecCccccccccccccccCchhhhhcccCCCceEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHhh
Q 004370 463 RGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPSLIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 463 kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~~ 541 (758)
+|+..++.|.|...+.+- ..+.++|.|...- .++..|.|.|+++||..+|+++||.+...
T Consensus 853 rgi~d~~~~nvv~~~q~~-------------n~~~~vf~l~~~~------~~~~~~~~aadsqEe~~eW~k~i~E~t~~ 912 (1267)
T KOG1264|consen 853 RGILDLNTYNVVKAPQGK-------------NQKSFVFILEPKW------QGKPPVEFAADSQEELFEWFKSIREITWK 912 (1267)
T ss_pred hccccccccceeeccccc-------------CCcceEEEechhh------hcCCceEEecCchHHHHHHHHHHHHHHHH
Confidence 456666666654433221 2477899997542 25678999999999999999999887764
No 111
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=58.94 E-value=8.1 Score=37.40 Aligned_cols=42 Identities=19% Similarity=0.224 Sum_probs=29.3
Q ss_pred EEEEEecCCCCCchhchHHHHHH-HhcCCCCCceeeecCCCCCCCc
Q 004370 16 VLLVIIPATQTPDVSSYRALRIA-KEHDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 16 IILaVvpAn~~vDlans~aLklA-revDP~G~RTIGVlTK~Dlmd~ 60 (758)
+||.|+.+. |...+....+. ..+-..+...|-|+||+|+.++
T Consensus 2 vvl~VvD~~---~p~~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~~~ 44 (155)
T cd01849 2 VILEVLDAR---DPLGTRSPDIERVLIKEKGKKLILVLNKADLVPK 44 (155)
T ss_pred EEEEEEecc---CCccccCHHHHHHHHhcCCCCEEEEEechhcCCH
Confidence 577778887 44444444444 4444567899999999999864
No 112
>KOG3727 consensus Mitogen inducible gene product (contains ERM and PH domains) [Cell cycle control, cell division, chromosome partitioning]
Probab=57.82 E-value=6.9 Score=45.82 Aligned_cols=82 Identities=11% Similarity=0.069 Sum_probs=54.0
Q ss_pred CcccceeeeecCCcccccccchhhhhccceeecCccccccccccccccCchhhhhcccCCCceEEEEeccCcchhhhhhh
Q 004370 436 GWSKRWFVLNEKTGKLGYTKKQEERHFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPSLIFKITSKVPYKTVLKAH 515 (758)
Q Consensus 436 ~WkkRWFVL~~~sg~L~YyK~~~ek~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~~~F~I~t~~~~k~v~k~~ 515 (758)
.|+..||+...-. +.||++. -.|-+.|++-||++.++.... ..+-.+|-|....+ ..
T Consensus 378 ~f~t~~dl~~~~~--~s~~~s~--~ap~~~i~l~gcev~~dV~~~-------------~~k~~i~l~~~~~~------~m 434 (664)
T KOG3727|consen 378 YFFTFRDLHLSLY--KSSEDSR--GAPAISINLKGCEVTPDVNLS-------------QQKYAIKLLVPTAE------GM 434 (664)
T ss_pred HHHHHHHHHHHHH--hhHhhhc--CCCCCchhhcCcccCCccccc-------------cccceEEEEeecCC------cc
Confidence 3555555554332 6666666 577889999999886443221 12344555555442 24
Q ss_pred hhhhhhccChHHHHHHHHhhHHHHh
Q 004370 516 SALLLKAENMAEKFEWLNKLRVVIQ 540 (758)
Q Consensus 516 r~~~L~AeS~eE~~~Wv~aiRa~i~ 540 (758)
..++|+|+++..--.|+++-|-+..
T Consensus 435 sEi~LRCd~E~QYA~WMAaCrLASK 459 (664)
T KOG3727|consen 435 SEIWLRCDNEQQYARWMAACRLASK 459 (664)
T ss_pred ceeEEecCCHHHHHHHHHHhhHhhc
Confidence 6799999999999999999876543
No 113
>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=57.22 E-value=3.2 Score=48.49 Aligned_cols=99 Identities=13% Similarity=0.262 Sum_probs=64.3
Q ss_pred cccchhhcccCCCCCcccceeeeecCCcccccccchhhhhccceeecCcc-ccccccccccccCchhhhhcccCCCceEE
Q 004370 422 ITAGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQEERHFRGVVTLEEC-YIEEVVEDEDAKSSKDKKKQAEKGPSLIF 500 (758)
Q Consensus 422 i~~GwL~K~g~~~~~WkkRWFVL~~~sg~L~YyK~~~ek~~kG~I~L~~~-~v~~~~~~~~~~s~k~~~~np~~~~~~~F 500 (758)
.++||+.-...+-+--||-|.-|+.+. +..|.+......--.|||.+. +|+... ++ ...|++..+|+|
T Consensus 414 ~kEGWmvHyt~~d~lRkrHYWrldsk~--itlfqn~s~~ryYkeIPLsEIl~v~~~~-~~--------~~vp~~~~phcF 482 (888)
T KOG4236|consen 414 LKEGWMVHYTSKDNLRKRHYWRLDSKC--ITLFQNESTNRYYKEIPLSEILSVSSNN-GF--------SLVPAGTNPHCF 482 (888)
T ss_pred hhcceEEEEechhhhhhhhhheeccce--eEeeecCCCceeEEeecHHHhheeeccC-Cc--------ccCCCCCCCceE
Confidence 678998766544333334444577664 888888777777778999553 343221 11 122667789999
Q ss_pred EEeccCcchhhhhhhhhhhhhccC------------hHHHHHHHHhhHHHHhh
Q 004370 501 KITSKVPYKTVLKAHSALLLKAEN------------MAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 501 ~I~t~~~~k~v~k~~r~~~L~AeS------------~eE~~~Wv~aiRa~i~~ 541 (758)
.|.|.. ++++.-++ .+-...|-.+|+.+..|
T Consensus 483 EI~T~~----------~vyfVge~p~~~~~~~~g~g~d~a~~w~~ai~~alMp 525 (888)
T KOG4236|consen 483 EIRTAT----------TVYFVGENPSSTPGGESGVGLDAAQGWETAIQQALMP 525 (888)
T ss_pred EEEeee----------EEEEecCCCCCCccccccccchhhccCchhhhhcccc
Confidence 999873 45555555 34478999999887776
No 114
>cd05134 RasGAP_RASA3 RASA3 (or GAP1_IP4BP) is a member of the GAP1 family and has been shown to specifically bind 1,3,4,5-tetrakisphosphate (IP4). Thus, RASA3 may function as an IP4 receptor. The members of GAP1 family are characterized by a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. Purified RASA3 stimulates GAP activity on Ras with about a five-fold lower potency than p120RasGAP, but shows no GAP-stimulating activity at all against Rac or Rab3A.
Probab=55.31 E-value=7.3 Score=43.01 Aligned_cols=24 Identities=38% Similarity=0.934 Sum_probs=18.9
Q ss_pred cccchhhcc--cCC---CCCcccceeeee
Q 004370 422 ITAGFLLKK--SSK---TNGWSKRWFVLN 445 (758)
Q Consensus 422 i~~GwL~K~--g~~---~~~WkkRWFVL~ 445 (758)
+++|+|.|+ |.. +++||||||.|+
T Consensus 281 ~~~~~~~~r~~~~~~~~~~~~k~r~~~lt 309 (310)
T cd05134 281 LKEGFMIKRAQGRKRFGMKNFKKRWFRLT 309 (310)
T ss_pred hhhhhHHHhcccCCcccccchhheeeecC
Confidence 899999985 322 357999999997
No 115
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=55.24 E-value=42 Score=33.50 Aligned_cols=65 Identities=15% Similarity=0.227 Sum_probs=39.6
Q ss_pred HHHHHhcCCCCeEEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCCcchh-HHHHHHHHH
Q 004370 4 AMISKYVERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAEGDSK-ALAAVRALL 72 (758)
Q Consensus 4 ~mV~~YI~~~ntIILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd~gt~-~~~~~~~iL 72 (758)
.++..|+...+++|+++-..+ ....+ ...+.+.+...|...|-|+||+|+.+.... ..+.+.+++
T Consensus 80 ~~~~~~~~~~d~~ilV~d~~~---~~~~~-~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~ 145 (194)
T cd01891 80 GEVERVLSMVDGVLLLVDASE---GPMPQ-TRFVLKKALELGLKPIVVINKIDRPDARPEEVVDEVFDLF 145 (194)
T ss_pred HHHHHHHHhcCEEEEEEECCC---CccHH-HHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHH
Confidence 577889999998888766544 22221 122223333357889999999999864332 233344454
No 116
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=53.80 E-value=28 Score=36.33 Aligned_cols=46 Identities=15% Similarity=0.122 Sum_probs=29.5
Q ss_pred CCCeEEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCCcc
Q 004370 12 RSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAEGD 61 (758)
Q Consensus 12 ~~ntIILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd~g 61 (758)
.++.+|| |+.|.. .+. .....+.+.+...|...|.||||+|++++.
T Consensus 109 ~~D~~ll-Vvda~~--g~~-~~d~~~l~~l~~~~ip~ivvvNK~D~~~~~ 154 (224)
T cd04165 109 APDYAML-VVAANA--GII-GMTKEHLGLALALNIPVFVVVTKIDLAPAN 154 (224)
T ss_pred CCCEEEE-EEECCC--CCc-HHHHHHHHHHHHcCCCEEEEEECccccCHH
Confidence 4565554 556664 443 334444455555678899999999998643
No 117
>cd01255 PH_TIAM TIAM Pleckstrin homology (PH) domain. TIAM Pleckstrin homology (PH) domain. TIAM (T-cell invasion and metastasis) is a guanine nucleotide exchange factor specific for RAC1. It consists of an N-terminal PH domain followed by Raf-like ras binding domain(RDB), a PDZ domain, a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. This subfamily contains the alignment of the PH domain that follows the DH domain.
Probab=51.83 E-value=20 Score=35.26 Aligned_cols=65 Identities=6% Similarity=0.192 Sum_probs=43.9
Q ss_pred cceeecCccccccccccccccCchhhhhcccCCCceEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHhh
Q 004370 463 RGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPSLIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 463 kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~~ 541 (758)
+-+||++.+.|+..... +....++|.|.|.... .----.+.|.|+|.+.|.+...+..||.++..
T Consensus 92 r~miP~~alQVR~~n~a-------------d~e~~~vwEliH~kSe-~egRpE~vfqLCcS~~E~k~~flK~Irsilre 156 (160)
T cd01255 92 RVLIPVTALQVRASSAA-------------DMESNFLWELIHLKSE-LEGRPEKVFVLCCSTAESRNAFLKTIRSILRE 156 (160)
T ss_pred EEeeceeeeeeecCCCc-------------CcccceEEEEEeeccc-ccCCCcceEEEecCCHHHHHHHHHHHHHHHHH
Confidence 34788877777644321 1236788999876310 00001268999999999999999999998753
No 118
>KOG3523 consensus Putative guanine nucleotide exchange factor TIM [Signal transduction mechanisms]
Probab=51.79 E-value=11 Score=44.65 Aligned_cols=40 Identities=25% Similarity=0.421 Sum_probs=29.3
Q ss_pred CCceEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHH
Q 004370 495 GPSLIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRV 537 (758)
Q Consensus 495 ~~~~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa 537 (758)
..+|.|.++--. |.-...-.|.|+|+|+.|+..|+.||+-
T Consensus 553 ~~~hlF~ltLl~---N~~~~~~e~lL~a~s~Sd~~RWi~Al~p 592 (695)
T KOG3523|consen 553 SRPHLFLLTLLS---NHQGRQTELLLSAESQSDRQRWISALRP 592 (695)
T ss_pred cccceEEEehhh---ccCCCceeeeecCCchHHHHHHHHhcCC
Confidence 467888887321 2222235799999999999999999973
No 119
>PF15408 PH_7: Pleckstrin homology domain
Probab=51.37 E-value=9.9 Score=34.26 Aligned_cols=92 Identities=11% Similarity=0.184 Sum_probs=49.4
Q ss_pred cchhhcccCCCCCcccceeeeecCCcccccccchhhhhccceeecCccccccccccccccCchhhhhccc-CCCceEEEE
Q 004370 424 AGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQEERHFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAE-KGPSLIFKI 502 (758)
Q Consensus 424 ~GwL~K~g~~~~~WkkRWFVL~~~sg~L~YyK~~~ek~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~-~~~~~~F~I 502 (758)
+|||+.-- .+.-+||+.||+++. |.+|.+..-... ....|....+...-..+ +.+.|+ +-..+.|-.
T Consensus 1 EGYLY~~E--~~si~rRF~~L~~K~--~~~~~~KGG~~L-~sF~L~~s~~s~Pm~~~-------~~A~~N~Gi~A~G~L~ 68 (104)
T PF15408_consen 1 EGYLYRDE--DSSIQRRFVMLRSKQ--FNMYEDKGGQYL-CSFQLSSSVVSHPMVNF-------SQAVPNLGINAFGFLM 68 (104)
T ss_pred CCeEEEec--cchHHHHHHhhhhce--eEEecccCCcee-eeeehhhhhhhcccccc-------cccCCCCCeeEEEEEE
Confidence 46775431 223679999999875 667765432211 11111111111000000 011122 112345666
Q ss_pred eccCcchhhhhhhhhhhhhccChHHHHHHHHhh
Q 004370 503 TSKVPYKTVLKAHSALLLKAENMAEKFEWLNKL 535 (758)
Q Consensus 503 ~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~ai 535 (758)
+.++ .+.+.+-|+|.+-+..|+.++
T Consensus 69 ~~~~--------~~~~~~FA~S~~~~~~Wi~~m 93 (104)
T PF15408_consen 69 YSPS--------RRHVQCFASSKKVCQSWIQVM 93 (104)
T ss_pred ecCC--------cchhhhhhhHHHHHHHHHHHh
Confidence 6664 577888999999999999998
No 120
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=51.12 E-value=14 Score=36.34 Aligned_cols=51 Identities=18% Similarity=0.141 Sum_probs=32.7
Q ss_pred HHHHHhcCCCCeEEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCCc
Q 004370 4 AMISKYVERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 4 ~mV~~YI~~~ntIILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd~ 60 (758)
+.+.+.|++-+ +||.|+.+. +........+.... .+...|-|+||.|+.++
T Consensus 11 ~~~~~~i~~aD-~il~v~D~~---~~~~~~~~~i~~~~--~~k~~ilVlNK~Dl~~~ 61 (171)
T cd01856 11 RQIKEKLKLVD-LVIEVRDAR---IPLSSRNPLLEKIL--GNKPRIIVLNKADLADP 61 (171)
T ss_pred HHHHHHHhhCC-EEEEEeecc---CccCcCChhhHhHh--cCCCEEEEEehhhcCCh
Confidence 45678888888 666667665 33222222233333 24689999999999854
No 121
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=50.95 E-value=29 Score=32.30 Aligned_cols=51 Identities=12% Similarity=0.216 Sum_probs=32.0
Q ss_pred HHhcCCCCeEEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCCcc
Q 004370 7 SKYVERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAEGD 61 (758)
Q Consensus 7 ~~YI~~~ntIILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd~g 61 (758)
..++..-+.+|+++-+... ....+...++++++. +...|.|+||+|+.+..
T Consensus 71 ~~~~~~~d~ii~v~d~~~~-~~~~~~~~~~~~~~~---~~piiiv~nK~D~~~~~ 121 (157)
T cd01894 71 ELAIEEADVILFVVDGREG-LTPADEEIAKYLRKS---KKPVILVVNKVDNIKEE 121 (157)
T ss_pred HHHHHhCCEEEEEEecccc-CCccHHHHHHHHHhc---CCCEEEEEECcccCChH
Confidence 4566677766666554332 122333345555554 68899999999998753
No 122
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=50.60 E-value=11 Score=36.58 Aligned_cols=38 Identities=26% Similarity=0.337 Sum_probs=22.5
Q ss_pred EEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCC
Q 004370 16 VLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAE 59 (758)
Q Consensus 16 IILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd 59 (758)
+|.-|-.|| |-++--.-. =.|+--.-+||||||.||..
T Consensus 67 vi~~v~~an---d~~s~f~p~---f~~~~~k~vIgvVTK~DLae 104 (148)
T COG4917 67 VIIYVHAAN---DPESRFPPG---FLDIGVKKVIGVVTKADLAE 104 (148)
T ss_pred eeeeeeccc---CccccCCcc---cccccccceEEEEecccccc
Confidence 555566777 443322211 12333344999999999994
No 123
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=50.24 E-value=34 Score=31.82 Aligned_cols=51 Identities=16% Similarity=0.105 Sum_probs=33.5
Q ss_pred HHHHhcCCCCeEEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCC
Q 004370 5 MISKYVERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAE 59 (758)
Q Consensus 5 mV~~YI~~~ntIILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd 59 (758)
+...++...+.|++++.+.+ ..++....+.+.+...+...|-|+||.|+++
T Consensus 75 ~~~~~~~~~d~i~~v~d~~~----~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~ 125 (168)
T cd04163 75 AAWSALKDVDLVLFVVDASE----PIGEGDEFILELLKKSKTPVILVLNKIDLVK 125 (168)
T ss_pred HHHHHHHhCCEEEEEEECCC----ccCchHHHHHHHHHHhCCCEEEEEEchhccc
Confidence 45667888887777665544 2233333444444444678999999999994
No 124
>PF15405 PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A.
Probab=49.64 E-value=19 Score=34.98 Aligned_cols=108 Identities=19% Similarity=0.253 Sum_probs=42.3
Q ss_pred cccchhhcccCCCCCcccceeeeecCCcccccccchh------hhhccceeecCccccccccccccccCc----------
Q 004370 422 ITAGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQE------ERHFRGVVTLEECYIEEVVEDEDAKSS---------- 485 (758)
Q Consensus 422 i~~GwL~K~g~~~~~WkkRWFVL~~~sg~L~YyK~~~------ek~~kG~I~L~~~~v~~~~~~~~~~s~---------- 485 (758)
|.+|=|.+++.....|-.=-+.|=++- |..-|... -+-.+--|||+-+.|+..++....++.
T Consensus 2 i~~G~L~Rk~~~~~~~~di~~~LFDh~--Lll~K~k~~~k~e~ykV~r~PIPLeLL~l~~~~d~~~~~~~~~r~s~s~~~ 79 (135)
T PF15405_consen 2 IYKGDLKRKGDNSFNWVDIHVYLFDHY--LLLTKPKKVNKREQYKVYRRPIPLELLVLESMDDPPPQRSIAKRPSSSLIS 79 (135)
T ss_dssp ---------------S-EEEEEEESSE--EEEEEEEEETTEEEEEESS--EEGGG-EEEE--TTTS---------S----
T ss_pred ccccccccccccccccceeEEEeeccE--EEEEEEEecCCeEEEEEEECCcCHHHeeeecccCCCcccCcccccccCccC
Confidence 456777777776666765433333332 33333221 123356788888887755443222110
Q ss_pred -hh---hh---hc-ccCCCceEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHH
Q 004370 486 -KD---KK---KQ-AEKGPSLIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRV 537 (758)
Q Consensus 486 -k~---~~---~n-p~~~~~~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa 537 (758)
.. .. .+ ++.+..+-|++.+-+ +.+..|.|.|+|..+++.|+++|..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~yp~~~~hlG------~~~~~~TLyA~s~~~R~~W~e~I~~ 133 (135)
T PF15405_consen 80 SSSSNSNSPSNPNSSDSKSLYPFTFRHLG------RKGYSYTLYASSAQARQKWLEKIEE 133 (135)
T ss_dssp ---SHHHH--------TSSEEEEEE---G------GG-EEEEEE-SSHHHHHHHHHHHHH
T ss_pred CccCCCCccceeeeccCCCccCEEEEEcC------CCceEEEEEeCCHHHHHHHHHHHHh
Confidence 00 00 00 223456677877653 1234589999999999999999954
No 125
>KOG3531 consensus Rho guanine nucleotide exchange factor CDEP [Signal transduction mechanisms]
Probab=49.29 E-value=13 Score=45.53 Aligned_cols=102 Identities=25% Similarity=0.283 Sum_probs=70.9
Q ss_pred CcccCCCCCccccchhhcccCCCCCcccceeeeecCCcccccccch--hhh--hccceeecCccccccccccccccCchh
Q 004370 412 TLKTAGPGGEITAGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQ--EER--HFRGVVTLEECYIEEVVEDEDAKSSKD 487 (758)
Q Consensus 412 ~~~v~~~~~~i~~GwL~K~g~~~~~WkkRWFVL~~~sg~L~YyK~~--~ek--~~kG~I~L~~~~v~~~~~~~~~~s~k~ 487 (758)
.+.|.-....|+.|-|.|.+.+ +-++|-|-|-.+- |.|-.+- -++ ...|.||+. ..+++++...
T Consensus 741 e~LV~p~rE~ir~g~llK~skk--gLqqrmfFLfsdi--llytsk~~~~~~~fri~g~lP~~-l~~en~en~~------- 808 (1036)
T KOG3531|consen 741 ENLVHPGREFIRSGCLLKLSKK--GLQQRMFFLFSDI--LLYTSKGPDVQKCFRINGDLPLT-LTMENSENEW------- 808 (1036)
T ss_pred ccccCcchhhhhcCCchhhccc--cchhhhhhhhhhh--heeccCCCChhheeEeccCCceE-eeeecccccc-------
Confidence 3444322233888999988643 4667777776552 4444432 233 347999998 8888776542
Q ss_pred hhhcccCCCceEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHhh
Q 004370 488 KKKQAEKGPSLIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 488 ~~~np~~~~~~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~~ 541 (758)
..+++|.|.+. .++.+.+|.+.+++..|...++..++-
T Consensus 809 -------s~p~~~ti~~~---------qk~i~vsast~~~sk~~~~~r~~~i~~ 846 (1036)
T KOG3531|consen 809 -------SVPHCFTISGA---------QKQIYVSASTRRESKKWEFDRRKAIDL 846 (1036)
T ss_pred -------cCCceEEEecc---------ceEEEEeccchhhhhhhhhccchhhhh
Confidence 25789998876 488999999999999999999888764
No 126
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=49.01 E-value=1.4e+02 Score=34.83 Aligned_cols=49 Identities=16% Similarity=0.204 Sum_probs=33.1
Q ss_pred hcCCCCeEEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCCcch
Q 004370 9 YVERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAEGDS 62 (758)
Q Consensus 9 YI~~~ntIILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd~gt 62 (758)
-|++-+ +||.|+.+++ .+...+-.-+. .=|.+..+|-|+||.||..+..
T Consensus 293 ~i~~AD-lvL~v~D~~~--~~~~~d~~~~~--~~~~~~~~i~v~NK~DL~~~~~ 341 (454)
T COG0486 293 AIEEAD-LVLFVLDASQ--PLDKEDLALIE--LLPKKKPIIVVLNKADLVSKIE 341 (454)
T ss_pred HHHhCC-EEEEEEeCCC--CCchhhHHHHH--hcccCCCEEEEEechhcccccc
Confidence 344444 8888999996 33333332222 4467799999999999998654
No 127
>cd05131 RasGAP_IQGAP2 IQGAP2 is a member of the IQGAP family that contains a calponin-homology (CH) domain which binds F-actin, IQGAP-specific repeat, a single WW domain, four IQ motifs which mediate interactions with calmodulin, and a Ras-GTPase-activating protein (GAP)-related domain that binds Rho family GTPases. IQGAP2 and IQGAP3 play important roles in the regulation of the cytoskeleton for axon outgrowth in hippocampal neurons and are thought to stay in a common regulatory pathway. The results of RNA interference studies indicated that IQGAP3 partially compensates functions of IQGAP2, but has lesser ability than IQGAP2 to promote axon outgrowth in hippocampal neuron. Morevover, IQGAP2 is required for the cadherin-mediated cell-to-cell adhesion in Xenopus laevis embryos.
Probab=48.61 E-value=2.2e+02 Score=31.87 Aligned_cols=92 Identities=15% Similarity=0.190 Sum_probs=54.0
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 004370 250 YQPYLISPEKGLRSLIKSVLEMAKEPSRLCVDEVHRVLVDIVSAAANATPGLGRYPPFKREVVEIASAALDRFKSDAKKM 329 (758)
Q Consensus 250 ~~~~lf~P~~afe~Lik~qi~~~~~Pa~~cvd~V~~~L~~iv~~~~~~t~~l~rfP~L~~~i~~iv~~~L~~~~~~a~~~ 329 (758)
..|..++|+ +|..+-...-.....-+...+..+...|.++... ..|+. ++.-..-++.++.+.....++.
T Consensus 184 i~PAIvsPe-~f~ii~~~~~~~~~~~~rrnL~~iaKvLq~lan~-----~~F~~----~e~~m~pLN~fi~~~~~~~~~f 253 (339)
T cd05131 184 MNPAIVAPD-GFDIIDMTAGGQIHSDQRRNLGSVAKVLQHAASN-----KLFEG----ENDHLSSMNSYLSQTYQKFRKF 253 (339)
T ss_pred ccchhcCch-hcCccccccCCCCCHHHHhhHHHHHHHHHHHHCC-----CCCCC----cChHHHhHHHHHHHHHHHHHHH
Confidence 468888886 5542211000112223455677777667766642 23331 2233556788888889999999
Q ss_pred HHHHHHHhc--CCCCchhhHHHHH
Q 004370 330 VVALVDMER--VFVPPQHFIRLVQ 351 (758)
Q Consensus 330 v~~Lid~E~--~yi~tnhF~~~~q 351 (758)
+..+++.+- .++..+.|.+++.
T Consensus 254 l~~l~~V~d~e~~~~~d~Y~dl~~ 277 (339)
T cd05131 254 FQAACDVPEPEEKFNVDEYSDLVT 277 (339)
T ss_pred HHHHhcCCCHHHHcChhHHHHHHh
Confidence 999988764 2555555666654
No 128
>KOG3551 consensus Syntrophins (type beta) [Extracellular structures]
Probab=48.26 E-value=16 Score=41.19 Aligned_cols=98 Identities=19% Similarity=0.267 Sum_probs=63.4
Q ss_pred cccchhhcc--cCCCCCcccceeeeecCCcccccccchhhh-----hccceeecCccccccccccccccCchhhhhcccC
Q 004370 422 ITAGFLLKK--SSKTNGWSKRWFVLNEKTGKLGYTKKQEER-----HFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEK 494 (758)
Q Consensus 422 i~~GwL~K~--g~~~~~WkkRWFVL~~~sg~L~YyK~~~ek-----~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~ 494 (758)
-.-|||.++ ++....|+.-+.+|+++. |..|.+-... .|.-+-+|--..+.. .+ +.++ . +..
T Consensus 293 kHiGWLaeq~~~~G~~~w~P~l~~lTeke--lliYes~P~~keaws~P~~~ypLvaTRLvh--sg-~~~~-----s-~~~ 361 (506)
T KOG3551|consen 293 KHIGWLAEQVSGGGISQWKPKLMALTEKE--LLIYESMPWTKEAWSRPRHTYPLVATRLVH--SG-SGKG-----S-VIK 361 (506)
T ss_pred hhhhhHHhhccCCChhhhhhheeeechhh--hhhhhcChhhHHHhcChhhhhhhhhhhhee--cC-CCCC-----C-CcC
Confidence 345999988 444667999999999875 6666654322 344555553333221 11 1111 1 223
Q ss_pred CCceEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhh
Q 004370 495 GPSLIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKL 535 (758)
Q Consensus 495 ~~~~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~ai 535 (758)
+..+.|.+.|... ..-+++.|+.||..|+-.|..+|
T Consensus 362 g~~lsFa~RtGTr-----qGV~thlfrvEThrdLa~WtRsl 397 (506)
T KOG3551|consen 362 GLTLSFATRTGTR-----QGVETHLFRVETHRELAAWTRSL 397 (506)
T ss_pred CceEEEEEecccc-----cceEEEEEEeccHHHHHHHHHHH
Confidence 4557899988752 23478999999999999999988
No 129
>PF15011 CK2S: Casein Kinase 2 substrate
Probab=48.12 E-value=1.4e+02 Score=30.08 Aligned_cols=72 Identities=13% Similarity=0.218 Sum_probs=49.4
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHH--HHH---HHHHHhhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004370 264 LIKSVLEMAKEPSRLCVDEVHRV--LVD---IVSAAANATPGLGRYPPFKREVVEIASAALDRFKSDAKKMVVALVD 335 (758)
Q Consensus 264 Lik~qi~~~~~Pa~~cvd~V~~~--L~~---iv~~~~~~t~~l~rfP~L~~~i~~iv~~~L~~~~~~a~~~v~~Lid 335 (758)
=++++..+|++--..|...+... |.+ .+..+-.+...|..||.|++++.......++.-.....+.+..|-+
T Consensus 9 ~~~~~~~~W~~~~~~~~~~l~sl~nL~eqL~al~~~~~~~~pL~~fpdl~~rL~~Kq~~ale~vl~~L~e~l~~l~~ 85 (168)
T PF15011_consen 9 KVEEQMEKWDSALSRCLPLLSSLANLAEQLQALQNVKNYGTPLRSFPDLQERLRRKQLEALETVLAKLRETLEELQK 85 (168)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999887776555321 111 1222212222399999999999988888888888887777777654
No 130
>PRK13796 GTPase YqeH; Provisional
Probab=48.10 E-value=22 Score=39.96 Aligned_cols=51 Identities=12% Similarity=0.087 Sum_probs=37.4
Q ss_pred HHHhcCCCCeEEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCCcc
Q 004370 6 ISKYVERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAEGD 61 (758)
Q Consensus 6 V~~YI~~~ntIILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd~g 61 (758)
+.+-|...+++|+.|+++. |+..+-.-.+.+-+ . +...|-|+||.||+++.
T Consensus 62 ~l~~i~~~~~lIv~VVD~~---D~~~s~~~~L~~~~-~-~kpviLViNK~DLl~~~ 112 (365)
T PRK13796 62 LLNGIGDSDALVVNVVDIF---DFNGSWIPGLHRFV-G-NNPVLLVGNKADLLPKS 112 (365)
T ss_pred HHHhhcccCcEEEEEEECc---cCCCchhHHHHHHh-C-CCCEEEEEEchhhCCCc
Confidence 4566777888999999988 77766544444333 2 56789999999998753
No 131
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=47.14 E-value=48 Score=31.47 Aligned_cols=54 Identities=17% Similarity=0.271 Sum_probs=34.1
Q ss_pred HHHHHhcCCCCeEEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCCcc
Q 004370 4 AMISKYVERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAEGD 61 (758)
Q Consensus 4 ~mV~~YI~~~ntIILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd~g 61 (758)
.|...++..-+++|+++-+... ....+...+.+++. .|...|-|+||+|+.+..
T Consensus 65 ~~~~~~~~~~d~il~v~d~~~~-~~~~~~~~~~~~~~---~~~p~ivv~NK~Dl~~~~ 118 (168)
T cd01887 65 NMRARGASLTDIAILVVAADDG-VMPQTIEAIKLAKA---ANVPFIVALNKIDKPNAN 118 (168)
T ss_pred HHHHHHHhhcCEEEEEEECCCC-ccHHHHHHHHHHHH---cCCCEEEEEEceeccccc
Confidence 4566677777777666655432 11233344555555 467899999999998643
No 132
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=47.08 E-value=28 Score=42.30 Aligned_cols=172 Identities=17% Similarity=0.081 Sum_probs=103.5
Q ss_pred HHHHHHhcCCCCeEEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCCcchhHHHHHHHHHcCCC-CCCCC
Q 004370 3 DAMISKYVERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAEGDSKALAAVRALLLNQG-PPKTS 81 (758)
Q Consensus 3 ~~mV~~YI~~~ntIILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd~gt~~~~~~~~iL~nk~-pl~~~ 81 (758)
+.++.+|.+..| .+.+ |.. |.+++.++......++.+-++ +|+++.|.++ +.+ +. ...+-. ++.
T Consensus 303 ~~~~~~~~~el~-~~g~---~~~--~~~~~~~ll~~i~~~~~~~~~-~v~g~~~~~~-~~e-ls----ggari~~~F~-- 367 (657)
T KOG0446|consen 303 NKLLEKYQDELN-RIGA---VDV--DLANSAALLAIIREDPRGLRT-GVIGKLDLVP-TKA-LS----GGARINYPFH-- 367 (657)
T ss_pred HHHHHHHHHHHH-Hhcc---cCC--ccchhhHHHHHHHHHHHHHHH-hhcccccccc-hhc-cc----chhhhhhhhh--
Confidence 345666666666 3333 554 899999999888888999999 9999999996 332 00 111011 444
Q ss_pred CCCEEEEEcCCcccccccccCcccCCCHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004370 82 DIPWVAVIGQSVAISSVTSSGAAADSSLEAAWRAEVETLKRLLSGAPQNKLGRVALVDTIAGQIRNRMSLRVPKLLSGLQ 161 (758)
Q Consensus 82 ~lGy~~V~nRs~~~~~~Q~d~i~~~~s~~~a~~~E~~FF~s~~~~~~~~r~G~~~L~~~Ls~~L~~hI~~~LP~l~~~I~ 161 (758)
.+|.++..+-++ + ...+..+-.+ ...-+..+.+.......+-..|++..=+.|.+.-.+++=.+-+++.
T Consensus 368 -~~f~~~i~~i~~------~---~~~~~~~i~~-~i~~~~G~~~~lf~p~~afe~lvk~~i~~l~~p~l~~v~~v~~el~ 436 (657)
T KOG0446|consen 368 -GGFPGVIKKLPP------D---RKLLGQNIEK-LVSEASGIRPSLFVPESSFESLVKGQIQSLRDPSLKCVEEVHRELV 436 (657)
T ss_pred -hccchhhhcCCc------c---hhhhHHHHHH-HHHhccCCCccccCChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 467777666522 1 2222222222 2222222223344566777777777777777777888888888888
Q ss_pred HhHHHHHH--HHHHcCCCCCCChHHHHHHHHHHHHHHHHHHHHhh
Q 004370 162 GKSQIVQD--ELLKLGDQILENTEGTKALALQLCREFEDKFLQHI 204 (758)
Q Consensus 162 ~~l~~~e~--eL~~LG~~~~~~~e~~~~~ll~li~~F~~~f~~~I 204 (758)
..+..+-. ++.+|+....... ..+...+.++.+..++.+
T Consensus 437 ~~~~~~~~~~~l~rfp~l~~~~~----~~~~~~~~~~~~~t~~~v 477 (657)
T KOG0446|consen 437 RIVADSIRATELKRFPVLYSELV----EIASSLIAEGLDETKKAV 477 (657)
T ss_pred HHHHHHhhhHHHHHhHHHHHHHH----HHHHHHHHHhhhHHHHHH
Confidence 88888888 6888876553322 223444444444444433
No 133
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=46.31 E-value=87 Score=33.73 Aligned_cols=51 Identities=16% Similarity=0.236 Sum_probs=33.3
Q ss_pred HHHhcCCCCeEEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCCc
Q 004370 6 ISKYVERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 6 V~~YI~~~ntIILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd~ 60 (758)
+..++..-+++||+| .|..-+...+...++++++ .|...|.||+|+|+.+.
T Consensus 81 ~~~~l~~aD~ailVV-Da~~g~~~~t~~~~~~~~~---~~~p~ivviNK~D~~~a 131 (270)
T cd01886 81 VERSLRVLDGAVAVF-DAVAGVEPQTETVWRQADR---YNVPRIAFVNKMDRTGA 131 (270)
T ss_pred HHHHHHHcCEEEEEE-ECCCCCCHHHHHHHHHHHH---cCCCEEEEEECCCCCCC
Confidence 456777778777765 4443133334455555554 56789999999999853
No 134
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=46.25 E-value=42 Score=34.91 Aligned_cols=48 Identities=21% Similarity=0.403 Sum_probs=27.4
Q ss_pred cCCCCeEEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCCc
Q 004370 10 VERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 10 I~~~ntIILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd~ 60 (758)
++.-++ +|.|++++...+......+.+.++.. ..+.|+|+||+|++++
T Consensus 101 ak~aDv-VllviDa~~~~~~~~~~i~~~l~~~g--~p~vi~VvnK~D~~~~ 148 (225)
T cd01882 101 AKVADL-VLLLIDASFGFEMETFEFLNILQVHG--FPRVMGVLTHLDLFKK 148 (225)
T ss_pred HHhcCE-EEEEEecCcCCCHHHHHHHHHHHHcC--CCeEEEEEeccccCCc
Confidence 444454 45556666412223334555555442 2357899999999954
No 135
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=44.77 E-value=42 Score=34.26 Aligned_cols=51 Identities=22% Similarity=0.256 Sum_probs=33.8
Q ss_pred HHHHHhcCCCCeEEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCC
Q 004370 4 AMISKYVERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQA 58 (758)
Q Consensus 4 ~mV~~YI~~~ntIILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlm 58 (758)
.++..|+..-+++|++|-.... . .....++.+.+...|.-.|-|+||+|+.
T Consensus 86 ~~~~~~~~~aD~~llVvD~~~~---~-~~~~~~~~~~~~~~~~p~iiviNK~D~~ 136 (213)
T cd04167 86 DEVAAALRLSDGVVLVVDVVEG---V-TSNTERLIRHAILEGLPIVLVINKIDRL 136 (213)
T ss_pred HHHHHHHHhCCEEEEEEECCCC---C-CHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence 4567888888988888765442 2 1222333344444567899999999987
No 136
>PF08429 PLU-1: PLU-1-like protein; InterPro: IPR013637 This domain is found in the central region of lysine-specific demethylases, which are nuclear proteins that may have a role in DNA-binding and transcription, and are associated with malignant cancer phenotypes []. The domain is also found in various other Jumonji/ARID domain-containing proteins (see IPR013129 from INTERPRO, IPR001606 from INTERPRO). ; GO: 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process
Probab=44.27 E-value=4.7e+02 Score=28.70 Aligned_cols=61 Identities=8% Similarity=-0.026 Sum_probs=43.8
Q ss_pred ccChhhHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHhhhhHHHHHHH---HHHHHHHHHHHHH
Q 004370 234 HFDMKNVKRVVLEADGYQPYLISPEKGLRSLIKSVLEMAKEPSRLCVD---EVHRVLVDIVSAA 294 (758)
Q Consensus 234 ~~~~~~Vr~~I~~~~G~~~~lf~P~~afe~Lik~qi~~~~~Pa~~cvd---~V~~~L~~iv~~~ 294 (758)
.+++++|+.+|.+..+..++-..+..++-.-+......|..=+..|+. .-...|..++...
T Consensus 179 ~~tL~~l~~Ll~~g~~l~~~~~~~~~~~L~~~l~~~~~We~ka~~~L~~~~~~l~~Le~l~~~~ 242 (335)
T PF08429_consen 179 RLTLDELRELLDEGERLGIPSDEKLMAELQELLKQGEEWEEKAKELLSRPRVSLEQLEALLEEA 242 (335)
T ss_pred CCcHHHHHHHHHhhhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 378899999999777766666666665545566688899999999988 2255566666544
No 137
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=43.80 E-value=26 Score=34.47 Aligned_cols=56 Identities=11% Similarity=0.255 Sum_probs=32.6
Q ss_pred HHHHHhcCCCCeE--EEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCCcch
Q 004370 4 AMISKYVERSDAV--LLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAEGDS 62 (758)
Q Consensus 4 ~mV~~YI~~~ntI--ILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd~gt 62 (758)
.++..|+.....+ ++.|+.+.. .+ +.....+.+.++..|...+-|+||+|+++.+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~v~d~~~--~~-~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~~~ 152 (196)
T PRK00454 95 KLIEEYLRTRENLKGVVLLIDSRH--PL-KELDLQMIEWLKEYGIPVLIVLTKADKLKKGE 152 (196)
T ss_pred HHHHHHHHhCccceEEEEEEecCC--CC-CHHHHHHHHHHHHcCCcEEEEEECcccCCHHH
Confidence 4667788766433 334444442 12 12222333444455778899999999987654
No 138
>COG0218 Predicted GTPase [General function prediction only]
Probab=43.17 E-value=77 Score=32.99 Aligned_cols=58 Identities=16% Similarity=0.300 Sum_probs=39.2
Q ss_pred HHHHHHhcCCCCeEEEEEe--cCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCCcchh
Q 004370 3 DAMISKYVERSDAVLLVII--PATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAEGDSK 63 (758)
Q Consensus 3 ~~mV~~YI~~~ntIILaVv--pAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd~gt~ 63 (758)
.+||.+|++...+|-++|+ .+.........+-+..++++ |..++=|+||+|.+..+..
T Consensus 94 ~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~---~i~~~vv~tK~DKi~~~~~ 153 (200)
T COG0218 94 KKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLEL---GIPVIVVLTKADKLKKSER 153 (200)
T ss_pred HHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHc---CCCeEEEEEccccCChhHH
Confidence 4799999999877776665 33321122233445555555 7889999999999986554
No 139
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=43.15 E-value=65 Score=33.70 Aligned_cols=51 Identities=22% Similarity=0.272 Sum_probs=34.4
Q ss_pred HHHHHhcCCCCeEEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCC
Q 004370 4 AMISKYVERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQA 58 (758)
Q Consensus 4 ~mV~~YI~~~ntIILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlm 58 (758)
..+..++..-+++||+|-.... +...+...++.+. ..|...|-|++|+|+.
T Consensus 88 ~~~~~~l~~aD~~ilVvD~~~g-~~~~t~~~l~~~~---~~~~p~ilviNKiD~~ 138 (222)
T cd01885 88 SEVTAALRLCDGALVVVDAVEG-VCVQTETVLRQAL---KERVKPVLVINKIDRL 138 (222)
T ss_pred HHHHHHHHhcCeeEEEEECCCC-CCHHHHHHHHHHH---HcCCCEEEEEECCCcc
Confidence 3567788888888886654442 3333434444444 4578899999999987
No 140
>PRK00093 GTP-binding protein Der; Reviewed
Probab=43.02 E-value=1e+02 Score=34.98 Aligned_cols=49 Identities=37% Similarity=0.436 Sum_probs=34.0
Q ss_pred HhcCCCCeEEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCCc
Q 004370 8 KYVERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 8 ~YI~~~ntIILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd~ 60 (758)
+++..-+.+||++ .|.. .+. ....++++.+.-.|...|-|+||+|+.++
T Consensus 251 ~~~~~ad~~ilVi-D~~~--~~~-~~~~~i~~~~~~~~~~~ivv~NK~Dl~~~ 299 (435)
T PRK00093 251 KAIERADVVLLVI-DATE--GIT-EQDLRIAGLALEAGRALVIVVNKWDLVDE 299 (435)
T ss_pred HHHHHCCEEEEEE-eCCC--CCC-HHHHHHHHHHHHcCCcEEEEEECccCCCH
Confidence 4677777666654 4553 333 44456777776678999999999999854
No 141
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=42.89 E-value=21 Score=34.04 Aligned_cols=62 Identities=24% Similarity=0.250 Sum_probs=36.4
Q ss_pred HHHhcCCCCeEEEEEecCCCCCchhch--HHHHHHHhcCCCCCceeeecCCCCCCCcchhHHHHHHHHHc
Q 004370 6 ISKYVERSDAVLLVIIPATQTPDVSSY--RALRIAKEHDADSTRTVGIISKMDQAEGDSKALAAVRALLL 73 (758)
Q Consensus 6 V~~YI~~~ntIILaVvpAn~~vDlans--~aLklArevDP~G~RTIGVlTK~Dlmd~gt~~~~~~~~iL~ 73 (758)
+.+.|++-+.| |.|+.+.. -+.+. ...+..++.. .+...|-|+||.|+.++.. ...|.+.++
T Consensus 5 ~~~~i~~aD~v-l~ViD~~~--p~~~~~~~l~~~l~~~~-~~k~~iivlNK~DL~~~~~--~~~~~~~~~ 68 (141)
T cd01857 5 LWRVVERSDIV-VQIVDARN--PLLFRPPDLERYVKEVD-PRKKNILLLNKADLLTEEQ--RKAWAEYFK 68 (141)
T ss_pred HHHHHhhCCEE-EEEEEccC--CcccCCHHHHHHHHhcc-CCCcEEEEEechhcCCHHH--HHHHHHHHH
Confidence 55667777744 45566663 23323 3444444443 3678999999999986432 233444443
No 142
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=41.84 E-value=25 Score=37.78 Aligned_cols=60 Identities=17% Similarity=0.123 Sum_probs=37.1
Q ss_pred HHHHhcCCCCeEEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCCcchhHHHHHHHHH
Q 004370 5 MISKYVERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAEGDSKALAAVRALL 72 (758)
Q Consensus 5 mV~~YI~~~ntIILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd~gt~~~~~~~~iL 72 (758)
-+.+.|+.-+ +||.|+.|. +.-+++...+.+.+ .+...|.|+||.|++++.. ...|.+.+
T Consensus 14 ~~~~~l~~aD-vVl~V~Dar---~p~~~~~~~i~~~l--~~kp~IiVlNK~DL~~~~~--~~~~~~~~ 73 (276)
T TIGR03596 14 EIKEKLKLVD-VVIEVLDAR---IPLSSRNPMIDEIR--GNKPRLIVLNKADLADPAV--TKQWLKYF 73 (276)
T ss_pred HHHHHHhhCC-EEEEEEeCC---CCCCCCChhHHHHH--CCCCEEEEEEccccCCHHH--HHHHHHHH
Confidence 3567777777 666667776 44344444444444 2578899999999986432 23455444
No 143
>COG0699 Predicted GTPases (dynamin-related) [General function prediction only]
Probab=41.59 E-value=1.7e+02 Score=33.70 Aligned_cols=76 Identities=16% Similarity=0.123 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHH-----HHHHHHHhhhhhccHHHHHHhhhcCHHHHHHHHHHHHH
Q 004370 577 LRWMAQEVRGYVEAVLNSLNANVPKAVVLCQVEKAKE-----DMLNQLYSSISAQSTERIGELLQEDKNAKSRRELCQKQ 651 (758)
Q Consensus 577 ~~~i~~~V~sY~~iV~k~i~d~VPKai~h~~V~~~k~-----~Ll~~LY~~~~~~~~~~~~~Ll~E~~~~~~rR~~~~~~ 651 (758)
.+.|..++.+| .++...+++.|++++++...+..++ ......+... ...|..+.+...+.+..+.+.
T Consensus 462 ~~~i~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~~~~~~~ 533 (546)
T COG0699 462 KQLIKSLLESL-LILAQKIRDSVLKAIFELLKNKRKRLAQKQRLKRLYLEQL-------EDELLRTAEEILELRLLLEQF 533 (546)
T ss_pred hHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhHHHHHHHHHHHHH
Confidence 45568999999 9999999999999999998665554 2233333333 567777788999999999999
Q ss_pred HHHHHHHHH
Q 004370 652 STLLSKLIR 660 (758)
Q Consensus 652 ~~~l~~~~~ 660 (758)
+..+..+..
T Consensus 534 ~~~~~~~~~ 542 (546)
T COG0699 534 LEALKLAAR 542 (546)
T ss_pred HHHHHHHHH
Confidence 998888765
No 144
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=41.09 E-value=1.1e+02 Score=37.76 Aligned_cols=50 Identities=22% Similarity=0.251 Sum_probs=34.4
Q ss_pred HHhcCCCCeEEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCCc
Q 004370 7 SKYVERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 7 ~~YI~~~ntIILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd~ 60 (758)
..++..-+.+||+ +.+.. . .+..-+++++.+...|.-.|-|+||.|+++.
T Consensus 527 ~~~i~~advvilV-iDat~--~-~s~~~~~i~~~~~~~~~piIiV~NK~DL~~~ 576 (712)
T PRK09518 527 QAAIERSELALFL-FDASQ--P-ISEQDLKVMSMAVDAGRALVLVFNKWDLMDE 576 (712)
T ss_pred HHHhhcCCEEEEE-EECCC--C-CCHHHHHHHHHHHHcCCCEEEEEEchhcCCh
Confidence 3456777766654 55553 3 3334456777776678899999999999874
No 145
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=40.38 E-value=77 Score=33.35 Aligned_cols=71 Identities=18% Similarity=0.250 Sum_probs=44.1
Q ss_pred HHHHhcCCCCeEEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCCcch-hHHHHHHHHHcCCC-CCC
Q 004370 5 MISKYVERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAEGDS-KALAAVRALLLNQG-PPK 79 (758)
Q Consensus 5 mV~~YI~~~ntIILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd~gt-~~~~~~~~iL~nk~-pl~ 79 (758)
.+..|+..-+++||+|..... +...+...++++++ .|...|-|++|+|+....- ...+.+.+.+..+. |+.
T Consensus 80 ~~~~~l~~aD~~IlVvd~~~g-~~~~~~~~~~~~~~---~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~ 152 (237)
T cd04168 80 EVERSLSVLDGAILVISAVEG-VQAQTRILWRLLRK---LNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQ 152 (237)
T ss_pred HHHHHHHHhCeEEEEEeCCCC-CCHHHHHHHHHHHH---cCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEE
Confidence 456788888888887665442 22233345555554 4788999999999985322 23445555665444 544
No 146
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=40.25 E-value=37 Score=32.79 Aligned_cols=53 Identities=13% Similarity=0.103 Sum_probs=33.6
Q ss_pred EEEEEecCCCCCchh--chHHHHHHHhcCCCCCceeeecCCCCCCCcchhHHHHHHHHHc
Q 004370 16 VLLVIIPATQTPDVS--SYRALRIAKEHDADSTRTVGIISKMDQAEGDSKALAAVRALLL 73 (758)
Q Consensus 16 IILaVvpAn~~vDla--ns~aLklArevDP~G~RTIGVlTK~Dlmd~gt~~~~~~~~iL~ 73 (758)
+||.|+++.. -+. +....+..+.. ..+...|-||||+|++++.. ...|...+.
T Consensus 11 ~il~VvD~~~--p~~~~~~~i~~~l~~~-~~~~p~ilVlNKiDl~~~~~--~~~~~~~~~ 65 (157)
T cd01858 11 VVIQVLDARD--PMGTRCKHVEEYLKKE-KPHKHLIFVLNKCDLVPTWV--TARWVKILS 65 (157)
T ss_pred EEEEEEECCC--CccccCHHHHHHHHhc-cCCCCEEEEEEchhcCCHHH--HHHHHHHHh
Confidence 7788888773 222 44456655554 33578999999999986532 234555554
No 147
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=40.23 E-value=96 Score=29.87 Aligned_cols=52 Identities=23% Similarity=0.296 Sum_probs=34.1
Q ss_pred HHHHHhcCCCCeEEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCC
Q 004370 4 AMISKYVERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAE 59 (758)
Q Consensus 4 ~mV~~YI~~~ntIILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd 59 (758)
++...|+...+++|++|-+... .+...-+.+..+++ .+.-.+-|+||.|+++
T Consensus 77 ~~~~~~~~~~d~~i~v~d~~~~-~~~~~~~~~~~~~~---~~~~i~iv~nK~D~~~ 128 (189)
T cd00881 77 SEVIRGLSVSDGAILVVDANEG-VQPQTREHLRIARE---GGLPIIVAINKIDRVG 128 (189)
T ss_pred HHHHHHHHhcCEEEEEEECCCC-CcHHHHHHHHHHHH---CCCCeEEEEECCCCcc
Confidence 4567788888888876544331 12222334445554 5678999999999997
No 148
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=39.58 E-value=62 Score=30.41 Aligned_cols=51 Identities=22% Similarity=0.190 Sum_probs=31.1
Q ss_pred HHHhcCCCCeEEEEEecCCCCCchhchHHHHHHHhcCCCCC-ceeeecCCCCCCCc
Q 004370 6 ISKYVERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADST-RTVGIISKMDQAEG 60 (758)
Q Consensus 6 V~~YI~~~ntIILaVvpAn~~vDlans~aLklArevDP~G~-RTIGVlTK~Dlmd~ 60 (758)
+..|+..-++||+++- ++........+.+.+++.. |. ..|-|+||.|+.+.
T Consensus 68 ~~~~~~~ad~ii~V~d-~~~~~~~~~~~~~~~~~~~---~~~~~ilv~NK~Dl~~~ 119 (164)
T cd04171 68 MLAGAGGIDLVLLVVA-ADEGIMPQTREHLEILELL---GIKRGLVVLTKADLVDE 119 (164)
T ss_pred HHhhhhcCCEEEEEEE-CCCCccHhHHHHHHHHHHh---CCCcEEEEEECccccCH
Confidence 4467778887777655 4420112333445555544 33 78999999999864
No 149
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=39.48 E-value=49 Score=30.70 Aligned_cols=49 Identities=22% Similarity=0.250 Sum_probs=31.0
Q ss_pred HHHhcCCCCeEEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCCc
Q 004370 6 ISKYVERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 6 V~~YI~~~ntIILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd~ 60 (758)
+..++.+.++++++ +.+. +..+..-.++.+. ..+...|-|+||.|+++.
T Consensus 74 ~~~~~~~~~~~v~v-~d~~---~~~~~~~~~~~~~--~~~~~vi~v~nK~D~~~~ 122 (157)
T cd04164 74 AREAIEEADLVLFV-IDAS---RGLDEEDLEILEL--PADKPIIVVLNKSDLLPD 122 (157)
T ss_pred HHHHHhhCCEEEEE-EECC---CCCCHHHHHHHHh--hcCCCEEEEEEchhcCCc
Confidence 44566677766555 4555 2333333444443 446889999999999974
No 150
>PRK15494 era GTPase Era; Provisional
Probab=39.36 E-value=2.4e+02 Score=31.37 Aligned_cols=49 Identities=18% Similarity=0.221 Sum_probs=28.4
Q ss_pred HhcCCCCeEEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCCc
Q 004370 8 KYVERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 8 ~YI~~~ntIILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd~ 60 (758)
.++..-+.||++| .+....+-.....+...++. +...|-|+||+|+.+.
T Consensus 127 ~~l~~aDvil~Vv-D~~~s~~~~~~~il~~l~~~---~~p~IlViNKiDl~~~ 175 (339)
T PRK15494 127 SSLHSADLVLLII-DSLKSFDDITHNILDKLRSL---NIVPIFLLNKIDIESK 175 (339)
T ss_pred HHhhhCCEEEEEE-ECCCCCCHHHHHHHHHHHhc---CCCEEEEEEhhcCccc
Confidence 3567777777765 44420121222334444443 4567889999999764
No 151
>PRK12289 GTPase RsgA; Reviewed
Probab=38.93 E-value=41 Score=37.78 Aligned_cols=62 Identities=21% Similarity=0.239 Sum_probs=36.0
Q ss_pred HHHHhcCCCCeEEEEEecCCCCCchhch---HHHHHHHhcCCCCCceeeecCCCCCCCcchhHHHHHHHHHc
Q 004370 5 MISKYVERSDAVLLVIIPATQTPDVSSY---RALRIAKEHDADSTRTVGIISKMDQAEGDSKALAAVRALLL 73 (758)
Q Consensus 5 mV~~YI~~~ntIILaVvpAn~~vDlans---~aLklArevDP~G~RTIGVlTK~Dlmd~gt~~~~~~~~iL~ 73 (758)
|.+.++.+-+.|+|++. +.. .++... .-|..| -..|...|=|+||+||+++.. ...|.+.+.
T Consensus 82 L~R~~~aNvD~vLlV~d-~~~-p~~~~~~LdR~L~~a---~~~~ip~ILVlNK~DLv~~~~--~~~~~~~~~ 146 (352)
T PRK12289 82 LDRPPVANADQILLVFA-LAE-PPLDPWQLSRFLVKA---ESTGLEIVLCLNKADLVSPTE--QQQWQDRLQ 146 (352)
T ss_pred eechhhhcCCEEEEEEE-CCC-CCCCHHHHHHHHHHH---HHCCCCEEEEEEchhcCChHH--HHHHHHHHH
Confidence 44556777775555554 442 244332 233334 235789999999999986422 234555553
No 152
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=38.51 E-value=35 Score=34.22 Aligned_cols=52 Identities=15% Similarity=0.203 Sum_probs=32.8
Q ss_pred EEEEEecCCCCCchhch---HHHHHHHhcCCCCCceeeecCCCCCCCcchhHHHHHHHHHc
Q 004370 16 VLLVIIPATQTPDVSSY---RALRIAKEHDADSTRTVGIISKMDQAEGDSKALAAVRALLL 73 (758)
Q Consensus 16 IILaVvpAn~~vDlans---~aLklArevDP~G~RTIGVlTK~Dlmd~gt~~~~~~~~iL~ 73 (758)
+||-|+.|. +.-.+ +.++++. +-..+...|-||+|.|++++.. ...|.+-+.
T Consensus 2 vVl~VvDar---~p~~~~~~~i~~~~~-l~~~~kp~IlVlNK~DL~~~~~--l~~~~~~~~ 56 (172)
T cd04178 2 VILEVLDAR---DPLGCRCPQVEEAVL-QAGGNKKLVLVLNKIDLVPKEN--VEKWLKYLR 56 (172)
T ss_pred EEEEEEECC---CCCCCCCHHHHHHHH-hccCCCCEEEEEehhhcCCHHH--HHHHHHHHH
Confidence 678888887 33333 4455532 2123478999999999997533 345666664
No 153
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=36.95 E-value=94 Score=29.27 Aligned_cols=54 Identities=22% Similarity=0.299 Sum_probs=36.3
Q ss_pred HHHHHHhcCCCCeEEEEEecCCCCCchhchHH-----HHHHHhcCCCCCceeeecCCCCCCCc
Q 004370 3 DAMISKYVERSDAVLLVIIPATQTPDVSSYRA-----LRIAKEHDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 3 ~~mV~~YI~~~ntIILaVvpAn~~vDlans~a-----LklArevDP~G~RTIGVlTK~Dlmd~ 60 (758)
+.|...|+..-+++|+++...+ ..+-+. ..+.+..+..+.-.|-|+||+|+.+.
T Consensus 64 ~~~~~~~~~~~~~~ilv~d~~~----~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~ 122 (164)
T cd04145 64 SAMREQYMRTGEGFLLVFSVTD----RGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQ 122 (164)
T ss_pred hHHHHHHHhhCCEEEEEEECCC----HHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCcccccc
Confidence 4578899999998888875543 222111 12334345556789999999999764
No 154
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=36.43 E-value=84 Score=31.22 Aligned_cols=55 Identities=16% Similarity=0.144 Sum_probs=36.0
Q ss_pred HHHHHhcCCCCeEEEEEecCCCCCchhc-hHHHHHHHhcCCCCCceeeecCCCCCCC
Q 004370 4 AMISKYVERSDAVLLVIIPATQTPDVSS-YRALRIAKEHDADSTRTVGIISKMDQAE 59 (758)
Q Consensus 4 ~mV~~YI~~~ntIILaVvpAn~~vDlan-s~aLklArevDP~G~RTIGVlTK~Dlmd 59 (758)
.+...|+..-+++|+++-..+. -.+.+ ..-+...++..+.+.-.|-|+||.|+..
T Consensus 65 ~~~~~~~~~ad~~i~v~D~~~~-~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~ 120 (191)
T cd04112 65 SVTHAYYRDAHALLLLYDITNK-ASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSG 120 (191)
T ss_pred HhhHHHccCCCEEEEEEECCCH-HHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchh
Confidence 3567888888887777644331 00111 1124566777777788999999999974
No 155
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=36.10 E-value=1.9e+02 Score=31.03 Aligned_cols=67 Identities=15% Similarity=0.207 Sum_probs=41.1
Q ss_pred HHHHhcCCCCeEEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCCcch-hHHHHHHHHHcCC
Q 004370 5 MISKYVERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAEGDS-KALAAVRALLLNQ 75 (758)
Q Consensus 5 mV~~YI~~~ntIILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd~gt-~~~~~~~~iL~nk 75 (758)
.+..++..-+++|++|-+.+. +...+...+++++. .|...|.|++|+|+..... ...+.+.+.+...
T Consensus 87 ~~~~~l~~aD~~IlVvda~~g-~~~~~~~i~~~~~~---~~~P~iivvNK~D~~~a~~~~~~~~l~~~l~~~ 154 (267)
T cd04169 87 DTYRTLTAVDSAVMVIDAAKG-VEPQTRKLFEVCRL---RGIPIITFINKLDREGRDPLELLDEIEEELGID 154 (267)
T ss_pred HHHHHHHHCCEEEEEEECCCC-ccHHHHHHHHHHHh---cCCCEEEEEECCccCCCCHHHHHHHHHHHHCCC
Confidence 356778888888887655442 23334445555544 4678999999999875433 2234455555443
No 156
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=36.08 E-value=91 Score=29.31 Aligned_cols=52 Identities=19% Similarity=0.208 Sum_probs=33.0
Q ss_pred HHHHHhcCCCCeEEEEEecCCCCCchhc-hHH---HHHH-HhcCC----CCCceeeecCCCCCCC
Q 004370 4 AMISKYVERSDAVLLVIIPATQTPDVSS-YRA---LRIA-KEHDA----DSTRTVGIISKMDQAE 59 (758)
Q Consensus 4 ~mV~~YI~~~ntIILaVvpAn~~vDlan-s~a---LklA-revDP----~G~RTIGVlTK~Dlmd 59 (758)
.|...|....+++||++-+.+ ..+ +.. +... +...+ .+...|.|.||.|+.+
T Consensus 64 ~~~~~~~~~~d~~ilv~D~~~----~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 124 (168)
T cd04119 64 EVRNEFYKDTQGVLLVYDVTD----RQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTK 124 (168)
T ss_pred HHHHHHhccCCEEEEEEECCC----HHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhccc
Confidence 467788889998888764433 221 111 2222 22333 5678999999999984
No 157
>KOG3520 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=35.89 E-value=21 Score=45.42 Aligned_cols=58 Identities=19% Similarity=0.320 Sum_probs=42.2
Q ss_pred ccceeecCccccccccccccccCchhhhhcccCCCceEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHhh
Q 004370 462 FRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPSLIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 462 ~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~~ 541 (758)
+..+|+|..+.|+++..+ ..-.|-|.+... .-.-|+|.|.|.+|+..|+.-|+.+|..
T Consensus 666 ~spVisL~~livRevAtd----------------~ka~FlIs~s~~------~pqmYEL~a~T~serntW~~li~~~v~s 723 (1167)
T KOG3520|consen 666 KSPVISLQKLIVREVATD----------------EKAFFLISMSDQ------GPEMYELVAQSKSERNTWIQLIQDAVAS 723 (1167)
T ss_pred CCCceehHHHHHHHHhcc----------------ccceEEEecCCC------CCeeEEEecCCHHHHHHHHHHHHHHHHh
Confidence 678999988877766533 334566665421 2367999999999999999999766654
No 158
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=35.55 E-value=14 Score=36.74 Aligned_cols=53 Identities=25% Similarity=0.443 Sum_probs=40.6
Q ss_pred cHHHHHHhcC--CCCeEEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCCc
Q 004370 2 DDAMISKYVE--RSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 2 ~~~mV~~YI~--~~ntIILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd~ 60 (758)
+|.+..+|+. +++ +|+.|+.|+ -++ +-|.|+.++-.-|..+|=||||+|++.+
T Consensus 66 ee~v~~~~l~~~~~D-~ii~VvDa~---~l~--r~l~l~~ql~e~g~P~vvvlN~~D~a~~ 120 (156)
T PF02421_consen 66 EERVARDYLLSEKPD-LIIVVVDAT---NLE--RNLYLTLQLLELGIPVVVVLNKMDEAER 120 (156)
T ss_dssp HHHHHHHHHHHTSSS-EEEEEEEGG---GHH--HHHHHHHHHHHTTSSEEEEEETHHHHHH
T ss_pred HHHHHHHHHhhcCCC-EEEEECCCC---CHH--HHHHHHHHHHHcCCCEEEEEeCHHHHHH
Confidence 5678889984 566 556666666 343 5577888888889999999999999964
No 159
>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]
Probab=35.27 E-value=53 Score=38.94 Aligned_cols=84 Identities=19% Similarity=0.248 Sum_probs=57.0
Q ss_pred cccchhhcccCCCCCcccceeeeecCCcccccccchhhhhccceeecCc-cccccccccccccCchhhhhcccCCCceEE
Q 004370 422 ITAGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQEERHFRGVVTLEE-CYIEEVVEDEDAKSSKDKKKQAEKGPSLIF 500 (758)
Q Consensus 422 i~~GwL~K~g~~~~~WkkRWFVL~~~sg~L~YyK~~~ek~~kG~I~L~~-~~v~~~~~~~~~~s~k~~~~np~~~~~~~F 500 (758)
.+.|+|.|+.+.+ -+||-|+|+.. +.|.||. +.....+|.|++.. +.++. +....|
T Consensus 452 ~k~~~l~k~~~lf--~rkr~lllTn~-~rll~~~-~~~~~lk~eip~~~~~~~e~-------------------~n~~~~ 508 (604)
T KOG0592|consen 452 LKEGALEKRQGLF--ARKRMLLLTNG-PRLLYVD-PQNLVLKGEIPWSPDLRVEL-------------------KNSSTF 508 (604)
T ss_pred HhHHHHHhhhhhh--hceeEEEecCC-CeEEEEe-cccceeccccccCcccceee-------------------ccCcce
Confidence 5678888875443 46799999975 4677776 66778899999954 33221 245678
Q ss_pred EEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHH
Q 004370 501 KITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVV 538 (758)
Q Consensus 501 ~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~ 538 (758)
.|.||. |+|+|.-. ......|..+|-..
T Consensus 509 ~i~TP~---------k~~~l~d~-~~~as~w~~ai~~~ 536 (604)
T KOG0592|consen 509 FIHTPN---------KVYYLEDP-EQRASVWCKAIETV 536 (604)
T ss_pred EEECCc---------cceeccCc-ccchhHHHHhhhhh
Confidence 899984 66655442 22356899999665
No 160
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=34.96 E-value=61 Score=28.87 Aligned_cols=53 Identities=17% Similarity=0.153 Sum_probs=34.4
Q ss_pred HHhcCCCCeEEEEEecCCCCCchhchHHH----HHHHhcCCCCCceeeecCCCCCCCcch
Q 004370 7 SKYVERSDAVLLVIIPATQTPDVSSYRAL----RIAKEHDADSTRTVGIISKMDQAEGDS 62 (758)
Q Consensus 7 ~~YI~~~ntIILaVvpAn~~vDlans~aL----klArevDP~G~RTIGVlTK~Dlmd~gt 62 (758)
..++.+.+++|+++...+ ........ .........+...|.|+||.|+.+...
T Consensus 63 ~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~ 119 (157)
T cd00882 63 RLYYRGADGIILVYDVTD---RESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERV 119 (157)
T ss_pred HHHhcCCCEEEEEEECcC---HHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccc
Confidence 457777887777765544 23222222 344455566799999999999987544
No 161
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=34.87 E-value=58 Score=35.24 Aligned_cols=61 Identities=18% Similarity=0.116 Sum_probs=36.7
Q ss_pred HHHHhcCCCCeEEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCCcchhHHHHHHHHHc
Q 004370 5 MISKYVERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAEGDSKALAAVRALLL 73 (758)
Q Consensus 5 mV~~YI~~~ntIILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd~gt~~~~~~~~iL~ 73 (758)
.+.+-++.-+ +||.|+.|.. .-+++...+.+.+- +...|-|+||.||+++. ....|.+.+.
T Consensus 17 ~l~~~l~~aD-vIL~VvDar~---p~~~~~~~l~~~~~--~kp~iiVlNK~DL~~~~--~~~~~~~~~~ 77 (287)
T PRK09563 17 EIKENLKLVD-VVIEVLDARI---PLSSENPMIDKIIG--NKPRLLILNKSDLADPE--VTKKWIEYFE 77 (287)
T ss_pred HHHHHhhhCC-EEEEEEECCC---CCCCCChhHHHHhC--CCCEEEEEEchhcCCHH--HHHHHHHHHH
Confidence 4567777777 6677777763 33332223333331 67899999999998642 2234555443
No 162
>KOG0517 consensus Beta-spectrin [Cytoskeleton]
Probab=34.54 E-value=8.3 Score=50.63 Aligned_cols=94 Identities=26% Similarity=0.399 Sum_probs=63.8
Q ss_pred cccchhhcc---cCC-----CCCcccceeeeecCCcccccccchhhh------hccceeec--CccccccccccccccCc
Q 004370 422 ITAGFLLKK---SSK-----TNGWSKRWFVLNEKTGKLGYTKKQEER------HFRGVVTL--EECYIEEVVEDEDAKSS 485 (758)
Q Consensus 422 i~~GwL~K~---g~~-----~~~WkkRWFVL~~~sg~L~YyK~~~ek------~~kG~I~L--~~~~v~~~~~~~~~~s~ 485 (758)
...|+|+.+ +.. ...|-.-++|+..+. |.+|||.... -.+|.-+| +.+.|+-..+-
T Consensus 2300 ~~eG~L~Rk~~~~A~e~k~~nRsw~~vy~~i~e~e--l~fykD~k~~~a~ve~~~r~e~~lel~~a~i~~a~dy------ 2371 (2473)
T KOG0517|consen 2300 QLEGFLYRKHLLGALEIKASNRSWDNVYCRIREKE--LGFYKDAKKDLASVELLVRGEPPLELDMAAIEVASDY------ 2371 (2473)
T ss_pred HHHhHHHHHHHHhhhhhhhhcccHHHHHHHHHhcc--chhhcccCcccccchhhccCCcchhcchhHHHHHHHH------
Confidence 567999766 222 457999999999775 8889988632 23455444 33333311110
Q ss_pred hhhhhcccCCCceEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHH
Q 004370 486 KDKKKQAEKGPSLIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVI 539 (758)
Q Consensus 486 k~~~~np~~~~~~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i 539 (758)
.++.+.|.+..+. ...|.|.|.+.++|.+|+.++-..+
T Consensus 2372 --------~kkk~v~~l~~~~--------gae~llq~k~ee~m~sWL~~~a~~~ 2409 (2473)
T KOG0517|consen 2372 --------HKKKHVFLLQLPP--------GAEHLLQAKDEEEMESWLRALAVKR 2409 (2473)
T ss_pred --------HHHhHhhhhcCCc--------hHHHHHhhccHHHHHHHHHHHHHHH
Confidence 2367888888653 6899999999999999988874433
No 163
>PRK03003 GTP-binding protein Der; Reviewed
Probab=34.12 E-value=1.5e+02 Score=34.54 Aligned_cols=49 Identities=16% Similarity=0.135 Sum_probs=34.0
Q ss_pred HhcCCCCeEEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCCc
Q 004370 8 KYVERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 8 ~YI~~~ntIILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd~ 60 (758)
.++.+-+.+||++- +. +-.+..-++++..+-..|.-.|-|+||.|+.+.
T Consensus 289 ~~i~~ad~vilV~D-a~---~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl~~~ 337 (472)
T PRK03003 289 AAIEAAEVAVVLID-AS---EPISEQDQRVLSMVIEAGRALVLAFNKWDLVDE 337 (472)
T ss_pred HHHhcCCEEEEEEe-CC---CCCCHHHHHHHHHHHHcCCCEEEEEECcccCCh
Confidence 46777787776654 44 333444456666666678899999999999863
No 164
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=34.11 E-value=92 Score=29.28 Aligned_cols=53 Identities=13% Similarity=0.194 Sum_probs=34.0
Q ss_pred HHHHHhcCCCCeEEEEEecCCCCCchhch----HHHHHHHh---cCCCCCceeeecCCCCCCCc
Q 004370 4 AMISKYVERSDAVLLVIIPATQTPDVSSY----RALRIAKE---HDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 4 ~mV~~YI~~~ntIILaVvpAn~~vDlans----~aLklAre---vDP~G~RTIGVlTK~Dlmd~ 60 (758)
.+...|+.+-+++|+++-..+ ..+- .-+....+ +...+...|-|+||.|+.+.
T Consensus 60 ~~~~~~~~~~d~ii~v~D~~~----~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~ 119 (162)
T cd04157 60 GLWEHYYKNIQGIIFVIDSSD----RLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDA 119 (162)
T ss_pred HHHHHHHccCCEEEEEEeCCc----HHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCC
Confidence 577889999998888765433 2211 11222222 22357889999999999864
No 165
>cd05133 RasGAP_IQGAP1 IQGAP1 is a homodimeric protein that is widely expressed among vertebrate cell types from early embryogenesis. Mammalian IQGAP1 protein is the best characterized member of the IQGAP family, and contains several protein-interacting domains. Human IQGAP1 is most similar to mouse Iqgap1 (94% identity) and has 62% identity to human IQGAP2. IQGAP1 binds and cross-links actin filaments in vitro and has been implicated in Ca2+/calmodulin signaling, E-cadherin-dependent cell adhesion, cell motility, and invasion. Yeast IQGAP homologues have a role in the recruitment of actin filaments, are components of the spindle pole body, and are required for actomyosin ring assembly and cytokinesis. Furthermore, IQGAP1 over-expression has also been detected in gastric and colorectal carcinomas and gastric cancer cell lines.
Probab=33.94 E-value=6.1e+02 Score=28.79 Aligned_cols=92 Identities=11% Similarity=0.148 Sum_probs=55.7
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 004370 250 YQPYLISPEKGLRSLIKSVLEMAKEPSRLCVDEVHRVLVDIVSAAANATPGLGRYPPFKREVVEIASAALDRFKSDAKKM 329 (758)
Q Consensus 250 ~~~~lf~P~~afe~Lik~qi~~~~~Pa~~cvd~V~~~L~~iv~~~~~~t~~l~rfP~L~~~i~~iv~~~L~~~~~~a~~~ 329 (758)
..|...+|+ +|-.+-...=.....-+...+-.|..+|.++... ..|+. ++.-..-++.++.+.....++.
T Consensus 184 i~PAIvsPe-~~~ii~~~~~~~~~~~~rrnL~~iaKvLQ~lan~-----~~f~~----~e~~m~pLN~fI~~~~~~~~~f 253 (360)
T cd05133 184 MNPAIVAPD-AFDIIDLSAGGQLTTDQRRNLGSIAKMLQHAASN-----KMFLG----DNAHLSIINEYLSQSYQKFRRF 253 (360)
T ss_pred ccccccCch-hcCccccccCCCCCHHHHhhHHHHHHHHHHHHcC-----CCCCC----CccHHHHHHHHHHHHHHHHHHH
Confidence 468888886 5442221101223444667777777777776652 23331 2223446778888888889999
Q ss_pred HHHHHHHhcC--CCCchhhHHHHH
Q 004370 330 VVALVDMERV--FVPPQHFIRLVQ 351 (758)
Q Consensus 330 v~~Lid~E~~--yi~tnhF~~~~q 351 (758)
+..+++.+-. ++..+.|.+++.
T Consensus 254 l~~~~~V~d~ee~~~~dey~dl~~ 277 (360)
T cd05133 254 FQSACEVPELQDKFNVDEYSDLVT 277 (360)
T ss_pred HHHhCCCCCHHHhcChhHHHHHHh
Confidence 9998887742 556666666544
No 166
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=33.03 E-value=2.2e+02 Score=30.09 Aligned_cols=53 Identities=21% Similarity=0.293 Sum_probs=34.7
Q ss_pred HHHHhcCCCCeEEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCCcc
Q 004370 5 MISKYVERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAEGD 61 (758)
Q Consensus 5 mV~~YI~~~ntIILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd~g 61 (758)
.+..++..-+++|++|-+... +...+...++.++ -.|...|-|+||+|+....
T Consensus 80 ~~~~~l~~aD~~i~Vvd~~~g-~~~~~~~~~~~~~---~~~~p~iivvNK~D~~~~~ 132 (268)
T cd04170 80 ETRAALRAADAALVVVSAQSG-VEVGTEKLWEFAD---EAGIPRIIFINKMDRERAD 132 (268)
T ss_pred HHHHHHHHCCEEEEEEeCCCC-CCHHHHHHHHHHH---HcCCCEEEEEECCccCCCC
Confidence 456777777877776655443 3333444455444 4577888999999998653
No 167
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=32.53 E-value=82 Score=29.40 Aligned_cols=57 Identities=21% Similarity=0.264 Sum_probs=37.1
Q ss_pred HHHHHHhcCCCCeEEEEEecCCCCCchhchH--HHHHHHhcCCCCCceeeecCCCCCCCc
Q 004370 3 DAMISKYVERSDAVLLVIIPATQTPDVSSYR--ALRIAKEHDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 3 ~~mV~~YI~~~ntIILaVvpAn~~vDlans~--aLklArevDP~G~RTIGVlTK~Dlmd~ 60 (758)
..|...|+..-+++|+++...+. ..+.+-. ...+.+..+..+...|-|.||.|+.+.
T Consensus 63 ~~l~~~~~~~~~~~i~v~~~~~~-~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~ 121 (162)
T cd04138 63 SAMRDQYMRTGEGFLCVFAINSR-KSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAAR 121 (162)
T ss_pred HHHHHHHHhcCCEEEEEEECCCH-HHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 35788899999988888765432 1122211 123444445667788999999999863
No 168
>COG1162 Predicted GTPases [General function prediction only]
Probab=32.27 E-value=1.2e+02 Score=33.55 Aligned_cols=107 Identities=17% Similarity=0.248 Sum_probs=61.2
Q ss_pred CCCCeEEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCCcchhHHHHHHHHHcCCCCCCCCCCCEEEEEc
Q 004370 11 ERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAEGDSKALAAVRALLLNQGPPKTSDIPWVAVIG 90 (758)
Q Consensus 11 ~~~ntIILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd~gt~~~~~~~~iL~nk~pl~~~~lGy~~V~n 90 (758)
.+..-+||.|+.++ .|+.+--.-+.-=-+-..|..-|=||||+||.+......+++..+..+ +||-.+.-
T Consensus 78 ~n~d~~iiIvs~~~--P~~~~~~ldR~Lv~ae~~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~--------~gy~v~~~ 147 (301)
T COG1162 78 ANNDQAIIVVSLVD--PDFNTNLLDRYLVLAEAGGIEPVIVLNKIDLLDDEEAAVKELLREYED--------IGYPVLFV 147 (301)
T ss_pred cccceEEEEEeccC--CCCCHHHHHHHHHHHHHcCCcEEEEEEccccCcchHHHHHHHHHHHHh--------CCeeEEEe
Confidence 34444566666666 488887765544444456899999999999998654432334545542 68876543
Q ss_pred CCcccccccccCcccCCCHHHHHHHHHHHHhhcCCC-CCCCCcchHHHHHHHH
Q 004370 91 QSVAISSVTSSGAAADSSLEAAWRAEVETLKRLLSG-APQNKLGRVALVDTIA 142 (758)
Q Consensus 91 Rs~~~~~~Q~d~i~~~~s~~~a~~~E~~FF~s~~~~-~~~~r~G~~~L~~~Ls 142 (758)
.. ..+..+++. .++|..+-.- .-++=+|-..|..+|.
T Consensus 148 s~-----------~~~~~~~~l----~~~l~~~~svl~GqSGVGKSSLiN~L~ 185 (301)
T COG1162 148 SA-----------KNGDGLEEL----AELLAGKITVLLGQSGVGKSTLINALL 185 (301)
T ss_pred cC-----------cCcccHHHH----HHHhcCCeEEEECCCCCcHHHHHHhhC
Confidence 32 112233332 3455554210 1246688777766554
No 169
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=31.96 E-value=1.4e+02 Score=28.27 Aligned_cols=54 Identities=19% Similarity=0.165 Sum_probs=36.5
Q ss_pred HHHHHHhcCCCCeEEEEEecCCCCCchhchH----HHHHHHhcCCCCCceeeecCCCCCCCc
Q 004370 3 DAMISKYVERSDAVLLVIIPATQTPDVSSYR----ALRIAKEHDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 3 ~~mV~~YI~~~ntIILaVvpAn~~vDlans~----aLklArevDP~G~RTIGVlTK~Dlmd~ 60 (758)
..+...|+..-.++|+++-..+ ..+-+ -+...++.-+.+.-.|-|.||.|+.+.
T Consensus 66 ~~~~~~~~~~~~~~i~v~d~~~----~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~ 123 (165)
T cd01868 66 RAITSAYYRGAVGALLVYDITK----KQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHL 123 (165)
T ss_pred HHHHHHHHCCCCEEEEEEECcC----HHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc
Confidence 3567788888888888776543 22222 244555666666778899999999763
No 170
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=31.93 E-value=99 Score=28.36 Aligned_cols=54 Identities=15% Similarity=0.192 Sum_probs=33.0
Q ss_pred HHHHHhcCCCCeEEEEEecCCCCCchhc-hHHHHHHHhcCCCCCceeeecCCCCCC
Q 004370 4 AMISKYVERSDAVLLVIIPATQTPDVSS-YRALRIAKEHDADSTRTVGIISKMDQA 58 (758)
Q Consensus 4 ~mV~~YI~~~ntIILaVvpAn~~vDlan-s~aLklArevDP~G~RTIGVlTK~Dlm 58 (758)
.+...|+++.+++|+++.+.+. ..+.. ..-+......-..+.-+|-|+||.|+.
T Consensus 64 ~~~~~~~~~~d~ii~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 118 (159)
T cd00154 64 SITPSYYRGAHGAILVYDITNR-ESFENLDKWLKELKEYAPENIPIILVGNKIDLE 118 (159)
T ss_pred HHHHHHhcCCCEEEEEEECCCH-HHHHHHHHHHHHHHHhCCCCCcEEEEEEccccc
Confidence 4678899888877777655331 00111 112333333333457899999999997
No 171
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=31.74 E-value=52 Score=36.90 Aligned_cols=53 Identities=8% Similarity=0.117 Sum_probs=36.8
Q ss_pred HHHHHhcCCCCeEEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCCcch
Q 004370 4 AMISKYVERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAEGDS 62 (758)
Q Consensus 4 ~mV~~YI~~~ntIILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd~gt 62 (758)
+|+..|... ..+||.|+.+. |...+-.-.+.+.+. +...|-|+||+||.++..
T Consensus 55 ~~l~~~~~~-~~~Il~VvD~~---d~~~s~~~~l~~~~~--~~piilV~NK~DLl~k~~ 107 (360)
T TIGR03597 55 NLLNSLGDS-NALIVYVVDIF---DFEGSLIPELKRFVG--GNPVLLVGNKIDLLPKSV 107 (360)
T ss_pred HHHhhcccC-CcEEEEEEECc---CCCCCccHHHHHHhC--CCCEEEEEEchhhCCCCC
Confidence 566677654 45777788876 777665555555543 467899999999997543
No 172
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=31.22 E-value=1e+02 Score=29.46 Aligned_cols=54 Identities=13% Similarity=0.132 Sum_probs=36.2
Q ss_pred HHHHHhcCCCCeEEEEEecCCCCCchhchH----HHHHHHhcCCCCCceeeecCCCCCCCcc
Q 004370 4 AMISKYVERSDAVLLVIIPATQTPDVSSYR----ALRIAKEHDADSTRTVGIISKMDQAEGD 61 (758)
Q Consensus 4 ~mV~~YI~~~ntIILaVvpAn~~vDlans~----aLklArevDP~G~RTIGVlTK~Dlmd~g 61 (758)
.+...|++.-+++|+++-.. |..+-+ .++..++..+.....|-|.||+|+.+..
T Consensus 65 ~~~~~~~~~~~~~l~v~d~~----~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~ 122 (165)
T cd01865 65 TITTAYYRGAMGFILMYDIT----NEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDER 122 (165)
T ss_pred HHHHHHccCCcEEEEEEECC----CHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCccc
Confidence 46678888888888876543 333322 2334455556667799999999998643
No 173
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=31.04 E-value=4e+02 Score=26.79 Aligned_cols=22 Identities=9% Similarity=0.005 Sum_probs=17.0
Q ss_pred HHHHHhcCCCCCceeeecCCCCCCC
Q 004370 35 LRIAKEHDADSTRTVGIISKMDQAE 59 (758)
Q Consensus 35 LklArevDP~G~RTIGVlTK~Dlmd 59 (758)
+++.++ .|.+.|-|+||+|+..
T Consensus 100 ~~~l~~---~~~~~ilV~nK~D~~~ 121 (197)
T cd04104 100 AKAIQC---MGKKFYFVRTKVDRDL 121 (197)
T ss_pred HHHHHH---hCCCEEEEEecccchh
Confidence 444555 4789999999999964
No 174
>PRK09866 hypothetical protein; Provisional
Probab=30.59 E-value=95 Score=37.96 Aligned_cols=55 Identities=18% Similarity=0.250 Sum_probs=34.5
Q ss_pred HHHhcCCCCeEEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCCcch
Q 004370 6 ISKYVERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAEGDS 62 (758)
Q Consensus 6 V~~YI~~~ntIILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd~gt 62 (758)
+.+.|..-+ +||.|++++..........++.-++... ....|-||+|+|++++..
T Consensus 252 M~eqL~eAD-vVLFVVDat~~~s~~DeeIlk~Lkk~~K-~~PVILVVNKIDl~dree 306 (741)
T PRK09866 252 LNQQLARAS-AVLAVLDYTQLKSISDEEVREAILAVGQ-SVPLYVLVNKFDQQDRNS 306 (741)
T ss_pred HHHHHhhCC-EEEEEEeCCCCCChhHHHHHHHHHhcCC-CCCEEEEEEcccCCCccc
Confidence 334677776 6777777774233444455555554431 137999999999987554
No 175
>KOG2070 consensus Guanine nucleotide exchange factor [Nucleotide transport and metabolism]
Probab=30.25 E-value=34 Score=39.79 Aligned_cols=77 Identities=16% Similarity=0.305 Sum_probs=55.4
Q ss_pred cccceeeeecCCccccccc-chhhhhc--cceeecCccccccccccccccCchhhhhcccCCCceEEEEeccCcchhhhh
Q 004370 437 WSKRWFVLNEKTGKLGYTK-KQEERHF--RGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPSLIFKITSKVPYKTVLK 513 (758)
Q Consensus 437 WkkRWFVL~~~sg~L~YyK-~~~ek~~--kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~~~F~I~t~~~~k~v~k 513 (758)
-+.|||+|=.+. |.++. ++....+ .|-+++.|..|...++.+ .....|.|....
T Consensus 325 ~~dRy~~LF~~~--llflsvs~rMs~fIyegKlp~tG~iV~klEdte--------------~~~nafeis~~t------- 381 (661)
T KOG2070|consen 325 EKDRYLLLFPNV--LLFLSVSPRMSGFIYEGKLPTTGMIVTKLEDTE--------------NHRNAFEISGST------- 381 (661)
T ss_pred hhhheeeeccce--eeeeEeccccchhhhccccccceeEEeehhhhh--------------cccccccccccc-------
Confidence 348999997664 55554 4545544 577999999888777653 245677777653
Q ss_pred hhhhhhhhccChHHHHHHHHhhHH
Q 004370 514 AHSALLLKAENMAEKFEWLNKLRV 537 (758)
Q Consensus 514 ~~r~~~L~AeS~eE~~~Wv~aiRa 537 (758)
-..+...|+.+.+..+|+.++.+
T Consensus 382 -i~rIv~~c~~~~~l~~wve~ln~ 404 (661)
T KOG2070|consen 382 -IERIVVSCNNQQDLQEWVEHLNK 404 (661)
T ss_pred -hhheeeccCChHHHHHHHHHhhh
Confidence 24567789999999999999964
No 176
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=30.10 E-value=87 Score=30.11 Aligned_cols=53 Identities=15% Similarity=0.228 Sum_probs=34.9
Q ss_pred HHHHHhcCCCCeEEEEEecCCCCCchhchHH-----HHHHHhcCCCCCceeeecCCCCCCCcc
Q 004370 4 AMISKYVERSDAVLLVIIPATQTPDVSSYRA-----LRIAKEHDADSTRTVGIISKMDQAEGD 61 (758)
Q Consensus 4 ~mV~~YI~~~ntIILaVvpAn~~vDlans~a-----LklArevDP~G~RTIGVlTK~Dlmd~g 61 (758)
.+...|+..-+.+||++. ++ |..+-+. +...++.-+ +.-.|-|.||+|+.+..
T Consensus 62 ~~~~~~~~~ad~~ilv~d-~~---~~~s~~~~~~~~~~~i~~~~~-~~pviiv~nK~Dl~~~~ 119 (166)
T cd01893 62 ANLAAEIRKANVICLVYS-VD---RPSTLERIRTKWLPLIRRLGV-KVPIILVGNKSDLRDGS 119 (166)
T ss_pred HHHhhhcccCCEEEEEEE-CC---CHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEchhccccc
Confidence 467788888888877664 44 3222222 244555544 67889999999998644
No 177
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=29.81 E-value=1.1e+02 Score=29.01 Aligned_cols=53 Identities=25% Similarity=0.309 Sum_probs=34.9
Q ss_pred HHHHHHhcCCCCeEEEEEecCCCCCchhch----HHHHHHHhcCCCCCceeeecCCCCCCCc
Q 004370 3 DAMISKYVERSDAVLLVIIPATQTPDVSSY----RALRIAKEHDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 3 ~~mV~~YI~~~ntIILaVvpAn~~vDlans----~aLklArevDP~G~RTIGVlTK~Dlmd~ 60 (758)
+.|+..|+...++||+++-. + |..+- .-+...++.+ .+.-.|-|+||.|+.+.
T Consensus 66 ~~~~~~~~~~~d~ii~v~d~-~---~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~ 122 (164)
T cd04101 66 SDMVSNYWESPSVFILVYDV-S---NKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLADK 122 (164)
T ss_pred HHHHHHHhCCCCEEEEEEEC-c---CHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccc
Confidence 46889999999988887754 3 33221 1233344444 34778999999999754
No 178
>COG1160 Predicted GTPases [General function prediction only]
Probab=29.56 E-value=2.2e+02 Score=33.12 Aligned_cols=75 Identities=28% Similarity=0.377 Sum_probs=51.7
Q ss_pred cCCCCeEEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCCcchhHHHHHHHHHcCCCCCCCCCCCEEEEE
Q 004370 10 VERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAEGDSKALAAVRALLLNQGPPKTSDIPWVAVI 89 (758)
Q Consensus 10 I~~~ntIILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd~gt~~~~~~~~iL~nk~pl~~~~lGy~~V~ 89 (758)
|..-+ ++|.|+.|.. .+.-|| +++|.-+--.|.=.|=|+.|-|++++.....+.+..-|.- +...++|--++
T Consensus 258 I~~a~-vvllviDa~~--~~~~qD-~~ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~----~l~~l~~a~i~ 329 (444)
T COG1160 258 IERAD-VVLLVIDATE--GISEQD-LRIAGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRR----KLPFLDFAPIV 329 (444)
T ss_pred HhhcC-EEEEEEECCC--CchHHH-HHHHHHHHHcCCCeEEEEEccccCCchhhHHHHHHHHHHH----HhccccCCeEE
Confidence 44444 6677788885 666665 5677777777999999999999999854444445444432 22236888887
Q ss_pred cCC
Q 004370 90 GQS 92 (758)
Q Consensus 90 nRs 92 (758)
.-|
T Consensus 330 ~iS 332 (444)
T COG1160 330 FIS 332 (444)
T ss_pred EEE
Confidence 777
No 179
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=29.54 E-value=80 Score=30.10 Aligned_cols=55 Identities=13% Similarity=0.198 Sum_probs=34.9
Q ss_pred HHHHHhcCCCCeEEEEEecCCCCCc-hhc-hHHHHHHHhcCCCCCceeeecCCCCCCCc
Q 004370 4 AMISKYVERSDAVLLVIIPATQTPD-VSS-YRALRIAKEHDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 4 ~mV~~YI~~~ntIILaVvpAn~~vD-lan-s~aLklArevDP~G~RTIGVlTK~Dlmd~ 60 (758)
.+...|+.+.++||+++-..+. + +.+ ..-+...++....+.--|-|.||.|+...
T Consensus 66 ~~~~~~~~~~~~ii~v~d~~~~--~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~ 122 (166)
T cd01869 66 TITSSYYRGAHGIIIVYDVTDQ--ESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDK 122 (166)
T ss_pred HHHHHHhCcCCEEEEEEECcCH--HHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccc
Confidence 5678899999999988765442 1 111 11233344444456778899999998753
No 180
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=29.10 E-value=66 Score=36.39 Aligned_cols=55 Identities=18% Similarity=0.212 Sum_probs=35.2
Q ss_pred HHHHHhcCCCCeEEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCCcch
Q 004370 4 AMISKYVERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAEGDS 62 (758)
Q Consensus 4 ~mV~~YI~~~ntIILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd~gt 62 (758)
+++..+++..+.||++| .+.. -.+.....+++.+...+...|-|+||+|+.+...
T Consensus 70 ~~~~~~~~~ad~vl~vv-D~~~---~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~~ 124 (429)
T TIGR03594 70 EQAEIAIEEADVILFVV-DGRE---GLTPEDEEIAKWLRKSGKPVILVANKIDGKKEDA 124 (429)
T ss_pred HHHHHHHhhCCEEEEEE-eCCC---CCCHHHHHHHHHHHHhCCCEEEEEECccCCcccc
Confidence 45677888888666665 4442 2233333444444445788999999999986543
No 181
>PRK01889 GTPase RsgA; Reviewed
Probab=29.07 E-value=71 Score=35.82 Aligned_cols=39 Identities=23% Similarity=0.357 Sum_probs=26.4
Q ss_pred EEEEecCCCCCchhchHH---HHHHHhcCCCCCceeeecCCCCCCCc
Q 004370 17 LLVIIPATQTPDVSSYRA---LRIAKEHDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 17 ILaVvpAn~~vDlans~a---LklArevDP~G~RTIGVlTK~Dlmd~ 60 (758)
+|.|++++. |+..... |-+|... |..-|=||||.||+++
T Consensus 116 vliV~s~~p--~~~~~~ldr~L~~a~~~---~i~piIVLNK~DL~~~ 157 (356)
T PRK01889 116 VFIVCSLNH--DFNLRRIERYLALAWES---GAEPVIVLTKADLCED 157 (356)
T ss_pred EEEEEecCC--CCChhHHHHHHHHHHHc---CCCEEEEEEChhcCCC
Confidence 555566664 6766444 5556665 5666779999999975
No 182
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=28.66 E-value=90 Score=29.62 Aligned_cols=54 Identities=17% Similarity=0.198 Sum_probs=34.0
Q ss_pred HHHHHHhcCCCCeEEEEEecCCCCCchhc-----hHHHHHHHhcCCCCCceeeecCCCCCCCc
Q 004370 3 DAMISKYVERSDAVLLVIIPATQTPDVSS-----YRALRIAKEHDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 3 ~~mV~~YI~~~ntIILaVvpAn~~vDlan-----s~aLklArevDP~G~RTIGVlTK~Dlmd~ 60 (758)
+.|...|+...++||+++- +. |..+ .....+.++..-.+.-.|-|+||.|+.+.
T Consensus 57 ~~~~~~~~~~~~~ii~v~d-~~---~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~ 115 (158)
T cd04151 57 RPYWRCYYSNTDAIIYVVD-ST---DRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGA 115 (158)
T ss_pred HHHHHHHhcCCCEEEEEEE-CC---CHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCC
Confidence 3567789999998888764 33 2211 11222333333346788999999999754
No 183
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=28.64 E-value=1.4e+02 Score=35.94 Aligned_cols=64 Identities=20% Similarity=0.294 Sum_probs=42.3
Q ss_pred HHHHhcCCCCeEEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCCcchh-HHHHHHHHH
Q 004370 5 MISKYVERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAEGDSK-ALAAVRALL 72 (758)
Q Consensus 5 mV~~YI~~~ntIILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd~gt~-~~~~~~~iL 72 (758)
.+..|+..-+++||+|-+.+. +-..+...++++++. |...|-|+||+|+.+...+ ..+.+.+++
T Consensus 80 ev~~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~~---~ip~IVviNKiD~~~a~~~~v~~ei~~l~ 144 (594)
T TIGR01394 80 EVERVLGMVDGVLLLVDASEG-PMPQTRFVLKKALEL---GLKPIVVINKIDRPSARPDEVVDEVFDLF 144 (594)
T ss_pred HHHHHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHHC---CCCEEEEEECCCCCCcCHHHHHHHHHHHH
Confidence 567888999988887765442 223445667777764 6788999999999754332 223344444
No 184
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=27.96 E-value=62 Score=32.98 Aligned_cols=46 Identities=24% Similarity=0.345 Sum_probs=27.5
Q ss_pred cCCCCeEEEEEecCCCCCchhchHHHHHHHhcCCCCC-ceeeecCCCCCCC
Q 004370 10 VERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADST-RTVGIISKMDQAE 59 (758)
Q Consensus 10 I~~~ntIILaVvpAn~~vDlans~aLklArevDP~G~-RTIGVlTK~Dlmd 59 (758)
+..-+++||+ +.|...+...+-..+.++++. |. +-|.||||+|+++
T Consensus 86 ~~~~D~~ilV-vda~~g~~~~~~~~~~~~~~~---~~~~iIvviNK~D~~~ 132 (195)
T cd01884 86 AAQMDGAILV-VSATDGPMPQTREHLLLARQV---GVPYIVVFLNKADMVD 132 (195)
T ss_pred hhhCCEEEEE-EECCCCCcHHHHHHHHHHHHc---CCCcEEEEEeCCCCCC
Confidence 4456666664 555531222333445555554 55 4789999999985
No 185
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=27.90 E-value=1.5e+02 Score=28.09 Aligned_cols=56 Identities=14% Similarity=0.149 Sum_probs=34.8
Q ss_pred HHHHHHhcCCCCeEEEEEecCCCCCchhchHHH--HHHHhcC---CCCCceeeecCCCCCCC
Q 004370 3 DAMISKYVERSDAVLLVIIPATQTPDVSSYRAL--RIAKEHD---ADSTRTVGIISKMDQAE 59 (758)
Q Consensus 3 ~~mV~~YI~~~ntIILaVvpAn~~vDlans~aL--klArevD---P~G~RTIGVlTK~Dlmd 59 (758)
..+...|+++-+++|+++-+.+. ..+.+...+ .+.+... +.+.-.|-|+||.|+.+
T Consensus 63 ~~~~~~~~~~~d~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 123 (172)
T cd01862 63 QSLGVAFYRGADCCVLVYDVTNP-KSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEE 123 (172)
T ss_pred HhHHHHHhcCCCEEEEEEECCCH-HHHHHHHHHHHHHHHhcCccCCCCceEEEEEECccccc
Confidence 35678899999988888765432 111222111 1233333 44777899999999985
No 186
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=27.86 E-value=1.4e+02 Score=29.87 Aligned_cols=47 Identities=23% Similarity=0.334 Sum_probs=29.8
Q ss_pred cCCCCeEEEEEecCCCCCchhch----HHHHHHHhcCCCCCceeeecCCCCCCCc
Q 004370 10 VERSDAVLLVIIPATQTPDVSSY----RALRIAKEHDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 10 I~~~ntIILaVvpAn~~vDlans----~aLklArevDP~G~RTIGVlTK~Dlmd~ 60 (758)
+.+-+.||+++ .+. |.... ....+-+.+...+...|.|+||.|+.+.
T Consensus 118 ~~~~d~ii~v~-D~~---~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~ 168 (204)
T cd01878 118 VAEADLLLHVV-DAS---DPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDD 168 (204)
T ss_pred HhcCCeEEEEE-ECC---CCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCCh
Confidence 45566555554 444 22222 2345666666667889999999999864
No 187
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=27.68 E-value=75 Score=36.81 Aligned_cols=48 Identities=23% Similarity=0.228 Sum_probs=31.6
Q ss_pred CCCeEEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCCcchhHH
Q 004370 12 RSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAEGDSKAL 65 (758)
Q Consensus 12 ~~ntIILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd~gt~~~ 65 (758)
+|..++|++- |.. -++|...|+.+...-.-|--||||+|-...|..++
T Consensus 212 ~p~e~lLVld-a~~-----Gq~a~~~a~~F~~~~~~~g~IlTKlD~~argG~aL 259 (429)
T TIGR01425 212 QPDNIIFVMD-GSI-----GQAAEAQAKAFKDSVDVGSVIITKLDGHAKGGGAL 259 (429)
T ss_pred CCcEEEEEec-ccc-----ChhHHHHHHHHHhccCCcEEEEECccCCCCccHHh
Confidence 5666666654 442 15667777776543345668999999998887654
No 188
>PRK10218 GTP-binding protein; Provisional
Probab=27.66 E-value=1.5e+02 Score=36.01 Aligned_cols=65 Identities=18% Similarity=0.226 Sum_probs=42.5
Q ss_pred HHHHHhcCCCCeEEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCCcchh-HHHHHHHHH
Q 004370 4 AMISKYVERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAEGDSK-ALAAVRALL 72 (758)
Q Consensus 4 ~mV~~YI~~~ntIILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd~gt~-~~~~~~~iL 72 (758)
.++..|++.-+++||+|-+... +-..+...++.|.+. |...|-||||+|+.+...+ ..+.+.+++
T Consensus 83 ~~v~~~l~~aDg~ILVVDa~~G-~~~qt~~~l~~a~~~---gip~IVviNKiD~~~a~~~~vl~ei~~l~ 148 (607)
T PRK10218 83 GEVERVMSMVDSVLLVVDAFDG-PMPQTRFVTKKAFAY---GLKPIVVINKVDRPGARPDWVVDQVFDLF 148 (607)
T ss_pred HHHHHHHHhCCEEEEEEecccC-ccHHHHHHHHHHHHc---CCCEEEEEECcCCCCCchhHHHHHHHHHH
Confidence 3567889999988887755442 223344566666664 7888999999999754332 233444554
No 189
>PRK09343 prefoldin subunit beta; Provisional
Probab=27.61 E-value=2.2e+02 Score=27.07 Aligned_cols=56 Identities=11% Similarity=0.107 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHHHHHhhcCCCCCc
Q 004370 148 RMSLRVPKLLSGLQGKSQIVQDELLKLGDQILENTEGTKALALQLCREFEDKFLQHITGGEGNG 211 (758)
Q Consensus 148 hI~~~LP~l~~~I~~~l~~~e~eL~~LG~~~~~~~e~~~~~ll~li~~F~~~f~~~I~G~~~gG 211 (758)
.|+...+.++..|.+++..++.++..|- .+..++-.-+.+-+..+..++.+.+.+|
T Consensus 64 lv~qd~~e~~~~l~~r~E~ie~~ik~le--------kq~~~l~~~l~e~q~~l~~ll~~~~~~~ 119 (121)
T PRK09343 64 LVKVDKTKVEKELKERKELLELRSRTLE--------KQEKKLREKLKELQAKINEMLSKYYPQG 119 (121)
T ss_pred HhhccHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 4677889999999999999999998883 4456678888888999999998877655
No 190
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=27.46 E-value=99 Score=29.62 Aligned_cols=56 Identities=20% Similarity=0.264 Sum_probs=32.7
Q ss_pred HHHHHhcCCCCeEEEEEecCCCCCchhc-hHHH-HHHHhcCCCCCceeeecCCCCCCCc
Q 004370 4 AMISKYVERSDAVLLVIIPATQTPDVSS-YRAL-RIAKEHDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 4 ~mV~~YI~~~ntIILaVvpAn~~vDlan-s~aL-klArevDP~G~RTIGVlTK~Dlmd~ 60 (758)
.++..|+++.+++|+++-..+. .-+.. ...+ .+.+.....+.-.|.|+||.|+.+.
T Consensus 73 ~~~~~~~~~~~~ii~v~D~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 130 (173)
T cd04155 73 PYWRNYFENTDCLIYVIDSADK-KRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATA 130 (173)
T ss_pred HHHHHHhcCCCEEEEEEeCCCH-HHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccC
Confidence 4677888888888887644331 00111 1111 2222223346778999999999764
No 191
>KOG3549 consensus Syntrophins (type gamma) [Extracellular structures]
Probab=26.85 E-value=54 Score=36.68 Aligned_cols=97 Identities=13% Similarity=0.161 Sum_probs=61.9
Q ss_pred cccchhhcc--c-CCCCCcccceeeeecCCcccccccchhhhhcc---ceeecC----ccccccccccccccCchhhhhc
Q 004370 422 ITAGFLLKK--S-SKTNGWSKRWFVLNEKTGKLGYTKKQEERHFR---GVVTLE----ECYIEEVVEDEDAKSSKDKKKQ 491 (758)
Q Consensus 422 i~~GwL~K~--g-~~~~~WkkRWFVL~~~sg~L~YyK~~~ek~~k---G~I~L~----~~~v~~~~~~~~~~s~k~~~~n 491 (758)
..-||..-+ + .....++.|+..|.+.. +|-|..|.-.... -..... =|+| +.+..
T Consensus 282 vyMGWvne~~q~~~s~q~y~P~FLaLkG~~--~y~F~tPPv~t~dw~rAe~ty~vye~mfki--~Kdsd----------- 346 (505)
T KOG3549|consen 282 VYMGWVNEGVQNNISWQSYKPRFLALKGTE--VYLFETPPVNTADWSRAEVTYKVYETMFKI--VKDSD----------- 346 (505)
T ss_pred EEeeeccccccCcccccccCceeEEecCcE--EEEEcCCCcchhhhhhhhhhHHHHHHHHHH--hcccc-----------
Confidence 778998655 2 23456888999999875 8877766421110 000000 0111 11110
Q ss_pred ccCCCceEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHhh
Q 004370 492 AEKGPSLIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 492 p~~~~~~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~~ 541 (758)
-.+.++++|.|.... +...+|+.|...|.-.|-+++.+++.-
T Consensus 347 ~~D~R~~CF~~qs~~--------ge~~yfsVEl~seLa~wE~sfq~Atf~ 388 (505)
T KOG3549|consen 347 TVDSRQHCFLLQSSG--------GEPRYFSVELRSELARWENSFQAATFT 388 (505)
T ss_pred ccccccceEEEEcCC--------CCceEEEEehhhHHHHHHHHHhhHHhH
Confidence 013478999999874 788999999999999999999666553
No 192
>KOG2484 consensus GTPase [General function prediction only]
Probab=26.70 E-value=79 Score=36.24 Aligned_cols=72 Identities=25% Similarity=0.329 Sum_probs=54.6
Q ss_pred HhcCCCCeEEEEEecCCCCCchhchHHHHHHHhcC-CCC-CceeeecCCCCCCCcchhHHHHHHHHHcCCCCCCCCCCCE
Q 004370 8 KYVERSDAVLLVIIPATQTPDVSSYRALRIAKEHD-ADS-TRTVGIISKMDQAEGDSKALAAVRALLLNQGPPKTSDIPW 85 (758)
Q Consensus 8 ~YI~~~ntIILaVvpAn~~vDlans~aLklArevD-P~G-~RTIGVlTK~Dlmd~gt~~~~~~~~iL~nk~pl~~~~lGy 85 (758)
+-|+..+ +||=|..|- |.--+..-++-+.|= ..| .|-|=||.|+||++. +..+.|..-|.++.|-
T Consensus 142 kvve~sD-VVleVlDAR---DPlgtR~~~vE~~V~~~~gnKkLILVLNK~DLVPr--Ev~e~Wl~YLr~~~pt------- 208 (435)
T KOG2484|consen 142 KVVEASD-VVLEVLDAR---DPLGTRCPEVEEAVLQAHGNKKLILVLNKIDLVPR--EVVEKWLVYLRREGPT------- 208 (435)
T ss_pred HHHhhhh-eEEEeeecc---CCCCCCChhHHHHHHhccCCceEEEEeehhccCCH--HHHHHHHHHHHhhCCc-------
Confidence 3344445 788999998 888888888888883 334 999999999999995 4457799999887643
Q ss_pred EEEEcCC
Q 004370 86 VAVIGQS 92 (758)
Q Consensus 86 ~~V~nRs 92 (758)
++.++-.
T Consensus 209 v~fkast 215 (435)
T KOG2484|consen 209 VAFKAST 215 (435)
T ss_pred ceeeccc
Confidence 3556665
No 193
>CHL00189 infB translation initiation factor 2; Provisional
Probab=26.55 E-value=73 Score=39.45 Aligned_cols=53 Identities=21% Similarity=0.292 Sum_probs=37.6
Q ss_pred HHHHHhcCCCCeEEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCCc
Q 004370 4 AMISKYVERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 4 ~mV~~YI~~~ntIILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd~ 60 (758)
.|...|+..-+.+||+|. |...+...+-++++.++. .|...|-|+||+|+.+.
T Consensus 310 ~mr~rg~~~aDiaILVVD-A~dGv~~QT~E~I~~~k~---~~iPiIVViNKiDl~~~ 362 (742)
T CHL00189 310 SMRSRGANVTDIAILIIA-ADDGVKPQTIEAINYIQA---ANVPIIVAINKIDKANA 362 (742)
T ss_pred HHHHHHHHHCCEEEEEEE-CcCCCChhhHHHHHHHHh---cCceEEEEEECCCcccc
Confidence 467788888888888774 442123455566666654 46889999999999864
No 194
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=26.17 E-value=3.2e+02 Score=26.42 Aligned_cols=57 Identities=14% Similarity=0.263 Sum_probs=35.4
Q ss_pred HHHHHHhcCCCCeEEEEEecCCCCCc-hhch-HHHH-HHHhcCCCCCceeeecCCCCCCCcc
Q 004370 3 DAMISKYVERSDAVLLVIIPATQTPD-VSSY-RALR-IAKEHDADSTRTVGIISKMDQAEGD 61 (758)
Q Consensus 3 ~~mV~~YI~~~ntIILaVvpAn~~vD-lans-~aLk-lArevDP~G~RTIGVlTK~Dlmd~g 61 (758)
+.|...|+.+-++||++|-+.+. + +.+. ..++ +.+.....+.--|-|++|.|+.+.-
T Consensus 57 ~~~~~~~~~~a~~ii~V~D~s~~--~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~ 116 (167)
T cd04161 57 RGIWVNYYAEAHGLVFVVDSSDD--DRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNAL 116 (167)
T ss_pred HHHHHHHHcCCCEEEEEEECCch--hHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCC
Confidence 45778999999999887755442 1 1111 1111 2222233567789999999997644
No 195
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=26.02 E-value=94 Score=29.45 Aligned_cols=52 Identities=12% Similarity=0.232 Sum_probs=33.6
Q ss_pred HHHHHhcCCCCeEEEEEecCCCCCchhchH-HH----HHHHhcCCCCCceeeecCCCCCCC
Q 004370 4 AMISKYVERSDAVLLVIIPATQTPDVSSYR-AL----RIAKEHDADSTRTVGIISKMDQAE 59 (758)
Q Consensus 4 ~mV~~YI~~~ntIILaVvpAn~~vDlans~-aL----klArevDP~G~RTIGVlTK~Dlmd 59 (758)
.|...|+.+-+++|+++...+ ..+-+ +. .+.+.....+...|-|.||.|+.+
T Consensus 64 ~~~~~~~~~ad~~i~v~d~~~----~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~ 120 (163)
T cd04176 64 SMRDLYIKNGQGFIVVYSLVN----QQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLES 120 (163)
T ss_pred chHHHHHhhCCEEEEEEECCC----HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchh
Confidence 477889999998888875543 22111 11 123323446778999999999865
No 196
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=26.02 E-value=1.9e+02 Score=29.43 Aligned_cols=51 Identities=18% Similarity=0.089 Sum_probs=29.4
Q ss_pred HHhcCCCCeEEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCCc
Q 004370 7 SKYVERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 7 ~~YI~~~ntIILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd~ 60 (758)
..++...+.+||+|- +.....-.+...+.+++.... .+.|.|+||+|+.+.
T Consensus 95 ~~~~~~ad~~llVvD-~~~~~~~~~~~~~~~~~~~~~--~~iIvviNK~D~~~~ 145 (208)
T cd04166 95 VTGASTADLAILLVD-ARKGVLEQTRRHSYILSLLGI--RHVVVAVNKMDLVDY 145 (208)
T ss_pred HHhhhhCCEEEEEEE-CCCCccHhHHHHHHHHHHcCC--CcEEEEEEchhcccC
Confidence 346677777766655 442111122234556655521 357889999999863
No 197
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=25.94 E-value=1.3e+02 Score=27.93 Aligned_cols=53 Identities=19% Similarity=0.240 Sum_probs=33.8
Q ss_pred HHHHHhcCCCCeEEEEEecCCCCCchhchHH----HHHHHhcCCCCCceeeecCCCCCCCc
Q 004370 4 AMISKYVERSDAVLLVIIPATQTPDVSSYRA----LRIAKEHDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 4 ~mV~~YI~~~ntIILaVvpAn~~vDlans~a----LklArevDP~G~RTIGVlTK~Dlmd~ 60 (758)
.+...|+.+-+++|+++...+ ..+-.. ++..+...+.+.-.|.|+||.|+.+.
T Consensus 64 ~~~~~~~~~~~~~i~v~d~~~----~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~ 120 (162)
T cd04123 64 ALGPIYYRDADGAILVYDITD----ADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQ 120 (162)
T ss_pred HhhHHHhccCCEEEEEEECCC----HHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc
Confidence 466778888887777775533 222111 22334455556789999999999853
No 198
>PF09691 PulS_OutS: Bacterial chaperone lipoprotein (PulS_OutS); InterPro: IPR019114 This family comprises lipoproteins from gamma proteobacterial species: pullulanase secretion protein PulS protein of Klebsiella pneumoniae (P20440 from SWISSPROT), the lipoprotein OutS protein of Erwinia chrysanthemi (Q01567 from SWISSPROT) and the functionally uncharacterised type II secretion protein EtpO (Q7BSV3 from SWISSPROT) from Escherichia coli O157:H7. PulS and OutS have been shown to interact with and facilitate insertion of secretins into the outer membrane, suggesting a chaperone-like, or piloting function for members of this family. In addition to the PulS/OutS proteins this entry also includes other functionally uncharacterised proteins, such as YacC from Escherischia coli (P0AA95 from SWISSPROT).; PDB: 3SOL_A 3UYM_A 3UTK_A 4A56_A.
Probab=25.77 E-value=2.3e+02 Score=26.79 Aligned_cols=78 Identities=17% Similarity=0.218 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhch--hHHHHHHHHHHHH---HHHHHHHhhhhhccHHHHHHhhhcCHHHHHHHHHH
Q 004370 574 EEELRWMAQEVRGYVEAVLNSLNANVP--KAVVLCQVEKAKE---DMLNQLYSSISAQSTERIGELLQEDKNAKSRRELC 648 (758)
Q Consensus 574 ~~~~~~i~~~V~sY~~iV~k~i~d~VP--Kai~h~~V~~~k~---~Ll~~LY~~~~~~~~~~~~~Ll~E~~~~~~rR~~~ 648 (758)
+++++-++.++.++.=--.+.=+.-+| +.|.--.|.-|++ .+-+..|..+...+.+.-..|..+.+.....-.++
T Consensus 20 ~~q~eqLasL~A~~~yLK~~C~~~dlP~~~~I~~~a~~~A~~~gWd~~~~~~~~l~~~se~~Y~~L~~d~~~~~~kC~~L 99 (109)
T PF09691_consen 20 SEQIEQLASLTAGARYLKNDCGRSDLPDEQEIIRAAVIFAQQRGWDTSNYNYQQLSQLSEESYQDLKKDNTPEATKCQEL 99 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHTT--CGG--HHHHHHHHHHHHHHHHHSSS-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCccCCCHHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHhccCCCcchHHHHH
Confidence 478999999999988877787888899 5788888888886 77777888887777777888888888888877776
Q ss_pred HHH
Q 004370 649 QKQ 651 (758)
Q Consensus 649 ~~~ 651 (758)
-+.
T Consensus 100 nr~ 102 (109)
T PF09691_consen 100 NRS 102 (109)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 199
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=25.39 E-value=2.8e+02 Score=33.00 Aligned_cols=65 Identities=17% Similarity=0.234 Sum_probs=41.3
Q ss_pred HHHHhcCCCCeEEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCCcchh-HHHHHHHHHc
Q 004370 5 MISKYVERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAEGDSK-ALAAVRALLL 73 (758)
Q Consensus 5 mV~~YI~~~ntIILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd~gt~-~~~~~~~iL~ 73 (758)
.+..++..-+++|++|-+.+. +...+...+++++. .|...|.|++|+|+...... ..+.+.+.|.
T Consensus 95 ~~~~~l~~aD~aIlVvDa~~g-v~~~t~~l~~~~~~---~~iPiiv~iNK~D~~~a~~~~~l~~i~~~l~ 160 (526)
T PRK00741 95 DTYRTLTAVDSALMVIDAAKG-VEPQTRKLMEVCRL---RDTPIFTFINKLDRDGREPLELLDEIEEVLG 160 (526)
T ss_pred HHHHHHHHCCEEEEEEecCCC-CCHHHHHHHHHHHh---cCCCEEEEEECCcccccCHHHHHHHHHHHhC
Confidence 466788888988888766553 23333355555554 57889999999998764332 2233444454
No 200
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=25.10 E-value=1.5e+02 Score=27.88 Aligned_cols=54 Identities=19% Similarity=0.126 Sum_probs=34.4
Q ss_pred HHHHHhcCCCCeEEEEEecCCCCCchhchHH---HHHHHhcCCCCCceeeecCCCCCCCc
Q 004370 4 AMISKYVERSDAVLLVIIPATQTPDVSSYRA---LRIAKEHDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 4 ~mV~~YI~~~ntIILaVvpAn~~vDlans~a---LklArevDP~G~RTIGVlTK~Dlmd~ 60 (758)
.+...|+.+..++|+++-+.+. -.-..+ +...+.+-..+.-.|-|.||.|+.+.
T Consensus 64 ~~~~~~~~~~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 120 (161)
T cd04113 64 SVTRSYYRGAAGALLVYDITNR---TSFEALPTWLSDARALASPNIVVILVGNKSDLADQ 120 (161)
T ss_pred HhHHHHhcCCCEEEEEEECCCH---HHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchh
Confidence 4678899999988888766552 111122 23334343345668889999999764
No 201
>PRK11058 GTPase HflX; Provisional
Probab=24.58 E-value=1.1e+02 Score=35.34 Aligned_cols=48 Identities=21% Similarity=0.290 Sum_probs=30.9
Q ss_pred hcCCCCeEEEEEecCCCCCchhchHH----HHHHHhcCCCCCceeeecCCCCCCCc
Q 004370 9 YVERSDAVLLVIIPATQTPDVSSYRA----LRIAKEHDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 9 YI~~~ntIILaVvpAn~~vDlans~a----LklArevDP~G~RTIGVlTK~Dlmd~ 60 (758)
++...+.|| .|+.++ |....+. .++.+++...+...|-|+||+|+.+.
T Consensus 273 ~~~~ADlIL-~VvDaS---~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~ 324 (426)
T PRK11058 273 ETRQATLLL-HVVDAA---DVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDD 324 (426)
T ss_pred HhhcCCEEE-EEEeCC---CccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCc
Confidence 466667554 455555 3332222 35566776667889999999999853
No 202
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=24.41 E-value=1.8e+02 Score=28.27 Aligned_cols=47 Identities=19% Similarity=0.261 Sum_probs=26.9
Q ss_pred HhcCCCCeEEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCCc
Q 004370 8 KYVERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 8 ~YI~~~ntIILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd~ 60 (758)
.++...++||++|-+.+. + ......+. ++.+ +.-.|+|+||+|+.+.
T Consensus 60 ~~~~~ad~il~v~d~~~~--~--s~~~~~~~-~~~~-~~~ii~v~nK~Dl~~~ 106 (158)
T PRK15467 60 TTLQDVDMLIYVHGANDP--E--SRLPAGLL-DIGV-SKRQIAVISKTDMPDA 106 (158)
T ss_pred HHHhcCCEEEEEEeCCCc--c--cccCHHHH-hccC-CCCeEEEEEccccCcc
Confidence 346788877776544332 2 11112222 2332 4568999999999763
No 203
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=24.07 E-value=1.2e+02 Score=28.61 Aligned_cols=57 Identities=11% Similarity=0.235 Sum_probs=36.9
Q ss_pred HHHHHHhcCCCCeEEEEEecCCCCCc-hhc--hHHHHHHHhcCCCCCceeeecCCCCCCCcc
Q 004370 3 DAMISKYVERSDAVLLVIIPATQTPD-VSS--YRALRIAKEHDADSTRTVGIISKMDQAEGD 61 (758)
Q Consensus 3 ~~mV~~YI~~~ntIILaVvpAn~~vD-lan--s~aLklArevDP~G~RTIGVlTK~Dlmd~g 61 (758)
..+...|+..-.++|+++-+.+. + +.. ..-.++.+.....+...|-|+||.|+....
T Consensus 57 ~~~~~~~~~~~~~~i~v~D~~~~--~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~ 116 (158)
T cd00878 57 RPLWKHYYENTNGIIFVVDSSDR--ERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL 116 (158)
T ss_pred HHHHHHHhccCCEEEEEEECCCH--HHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc
Confidence 34677888888888887655442 1 111 112234444556678899999999998644
No 204
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=24.01 E-value=1e+02 Score=29.53 Aligned_cols=55 Identities=15% Similarity=0.186 Sum_probs=34.7
Q ss_pred HHHHHHhcCCCCeEEEEEecCCCCCchhc-hHHHHHHHhcCCCCCceeeecCCCCCCC
Q 004370 3 DAMISKYVERSDAVLLVIIPATQTPDVSS-YRALRIAKEHDADSTRTVGIISKMDQAE 59 (758)
Q Consensus 3 ~~mV~~YI~~~ntIILaVvpAn~~vDlan-s~aLklArevDP~G~RTIGVlTK~Dlmd 59 (758)
..|...|+.+-+++||++-+.+. ..+.+ ..-+...++..| +...|-|+||.|+..
T Consensus 63 ~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~-~~p~ivv~nK~Dl~~ 118 (161)
T cd04124 63 QTMHASYYHKAHACILVFDVTRK-ITYKNLSKWYEELREYRP-EIPCIVVANKIDLDP 118 (161)
T ss_pred hhhhHHHhCCCCEEEEEEECCCH-HHHHHHHHHHHHHHHhCC-CCcEEEEEECccCch
Confidence 35788899999988887754332 11111 122344455444 478899999999854
No 205
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=23.94 E-value=1.3e+02 Score=36.04 Aligned_cols=51 Identities=22% Similarity=0.171 Sum_probs=34.1
Q ss_pred HHhcCCCCeEEEEEecCCCCCchhchHHHHHHHhcCCCCCc-eeeecCCCCCCCcc
Q 004370 7 SKYVERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTR-TVGIISKMDQAEGD 61 (758)
Q Consensus 7 ~~YI~~~ntIILaVvpAn~~vDlans~aLklArevDP~G~R-TIGVlTK~Dlmd~g 61 (758)
..++.+-+++||+| .|+.-+...+.+-+.+++.. |.. .|-|+||+|+++..
T Consensus 68 ~~g~~~aD~aILVV-Da~~G~~~qT~ehl~il~~l---gi~~iIVVlNK~Dlv~~~ 119 (581)
T TIGR00475 68 IAGGGGIDAALLVV-DADEGVMTQTGEHLAVLDLL---GIPHTIVVITKADRVNEE 119 (581)
T ss_pred HhhhccCCEEEEEE-ECCCCCcHHHHHHHHHHHHc---CCCeEEEEEECCCCCCHH
Confidence 35567788777755 45521224555667777665 555 99999999999754
No 206
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=23.89 E-value=6.4e+02 Score=24.15 Aligned_cols=52 Identities=13% Similarity=0.167 Sum_probs=28.2
Q ss_pred HHHHHhcCCCCeEEEEEecCCCCCchhchHHHH----HHHh-cCCCCCceeeecCCCCCCC
Q 004370 4 AMISKYVERSDAVLLVIIPATQTPDVSSYRALR----IAKE-HDADSTRTVGIISKMDQAE 59 (758)
Q Consensus 4 ~mV~~YI~~~ntIILaVvpAn~~vDlans~aLk----lAre-vDP~G~RTIGVlTK~Dlmd 59 (758)
.+...|+.+-+++|+++-..+ ..+-..++ ..+. ....+.-.|-|.||.|+.+
T Consensus 78 ~~~~~~~~~~~~~i~v~d~~~----~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~ 134 (180)
T cd04127 78 SLTTAFFRDAMGFLLIFDLTN----EQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLED 134 (180)
T ss_pred HHHHHHhCCCCEEEEEEECCC----HHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchh
Confidence 467788888887777765432 22222211 1111 1122345677778888764
No 207
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=23.79 E-value=2e+02 Score=27.43 Aligned_cols=56 Identities=13% Similarity=0.113 Sum_probs=35.3
Q ss_pred HHHHHhcCCCCeEEEEEecCCCCCchhc-hHHHHHHHhcCCCCCceeeecCCCCCCCc
Q 004370 4 AMISKYVERSDAVLLVIIPATQTPDVSS-YRALRIAKEHDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 4 ~mV~~YI~~~ntIILaVvpAn~~vDlan-s~aLklArevDP~G~RTIGVlTK~Dlmd~ 60 (758)
.+...|+..-+++||++-+.+. .-+.. ..-+...+...+.+.=-|-|.||.|+.+.
T Consensus 67 ~~~~~~~~~~d~~llv~d~~~~-~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 123 (165)
T cd01864 67 TITQSYYRSANGAIIAYDITRR-SSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQ 123 (165)
T ss_pred HHHHHHhccCCEEEEEEECcCH-HHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccc
Confidence 4678899999988887765442 01111 11233334444555668999999999864
No 208
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=23.38 E-value=1.3e+02 Score=29.70 Aligned_cols=52 Identities=17% Similarity=0.324 Sum_probs=32.8
Q ss_pred HHHHHhcCCCCeEEEEEecCCCCCchhchH-H----HHHHHhcCCCCCceeeecCCCCCCC
Q 004370 4 AMISKYVERSDAVLLVIIPATQTPDVSSYR-A----LRIAKEHDADSTRTVGIISKMDQAE 59 (758)
Q Consensus 4 ~mV~~YI~~~ntIILaVvpAn~~vDlans~-a----LklArevDP~G~RTIGVlTK~Dlmd 59 (758)
.|...|+..-+.||+++- +. |..+-+ + ..+.+.....+.-.|-|+||.|+.+
T Consensus 67 ~~~~~~~~~~d~ii~v~D-~~---~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~ 123 (183)
T cd04152 67 PLWKSYTRCTDGIVFVVD-SV---DVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN 123 (183)
T ss_pred HHHHHHhccCCEEEEEEE-CC---CHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc
Confidence 466788888887777654 44 332211 1 1233333445788999999999975
No 209
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=23.31 E-value=1.6e+02 Score=28.43 Aligned_cols=53 Identities=15% Similarity=0.166 Sum_probs=33.0
Q ss_pred HHHHHhcCCCCeEEEEEecCCCCCchhch-HHHHHHHhc--CCCCCceeeecCCCCCCCc
Q 004370 4 AMISKYVERSDAVLLVIIPATQTPDVSSY-RALRIAKEH--DADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 4 ~mV~~YI~~~ntIILaVvpAn~~vDlans-~aLklArev--DP~G~RTIGVlTK~Dlmd~ 60 (758)
.|...|+..-+++|+++-..+ ..+- .+.....++ +..+...|-|.+|.|+.+.
T Consensus 59 ~~~~~~~~~ad~ii~V~D~t~----~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~ 114 (164)
T cd04162 59 KYWKRYLSGSQGLIFVVDSAD----SERLPLARQELHQLLQHPPDLPLVVLANKQDLPAA 114 (164)
T ss_pred HHHHHHHhhCCEEEEEEECCC----HHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCC
Confidence 566789999999988875433 2211 111111111 2256889999999999753
No 210
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=23.19 E-value=1.8e+02 Score=26.69 Aligned_cols=54 Identities=17% Similarity=0.206 Sum_probs=32.0
Q ss_pred HHHHHhcCCCCeEEEEEecCCCCCchhch-HH----HHHHHhcCCCCCceeeecCCCCCCCcc
Q 004370 4 AMISKYVERSDAVLLVIIPATQTPDVSSY-RA----LRIAKEHDADSTRTVGIISKMDQAEGD 61 (758)
Q Consensus 4 ~mV~~YI~~~ntIILaVvpAn~~vDlans-~a----LklArevDP~G~RTIGVlTK~Dlmd~g 61 (758)
.+...|+...++||+++- +. |...- .+ ..+.+.....+...|-|+||.|+.+..
T Consensus 59 ~~~~~~~~~~d~ii~v~d-~~---~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~ 117 (159)
T cd04159 59 SMWERYCRGVNAIVYVVD-AA---DRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGAL 117 (159)
T ss_pred HHHHHHHhcCCEEEEEEE-CC---CHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCc
Confidence 467789999998777664 33 22111 11 111121122456789999999998653
No 211
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=23.12 E-value=66 Score=36.91 Aligned_cols=67 Identities=21% Similarity=0.239 Sum_probs=41.3
Q ss_pred EEEEEecCCCCCchhchHHHHH---HHhcCCCCCceeeecCCCCCCCcchhHHHHHHHHHcCCCCCCCCCCCEEEEEcCC
Q 004370 16 VLLVIIPATQTPDVSSYRALRI---AKEHDADSTRTVGIISKMDQAEGDSKALAAVRALLLNQGPPKTSDIPWVAVIGQS 92 (758)
Q Consensus 16 IILaVvpAn~~vDlans~aLkl---ArevDP~G~RTIGVlTK~Dlmd~gt~~~~~~~~iL~nk~pl~~~~lGy~~V~nRs 92 (758)
+|+-|+.|- |.--..+-.+ -|+--|. .--|-||.|+||++.... ..|+.+|.-+-|- +-||+-+|-+
T Consensus 216 VvvqVlDAR---DPmGTrc~~ve~ylkke~ph-KHli~vLNKvDLVPtwvt--~~Wv~~lSkeyPT----iAfHAsi~ns 285 (572)
T KOG2423|consen 216 VVVQVLDAR---DPMGTRCKHVEEYLKKEKPH-KHLIYVLNKVDLVPTWVT--AKWVRHLSKEYPT----IAFHASINNS 285 (572)
T ss_pred eeEEeeecc---CCcccccHHHHHHHhhcCCc-ceeEEEeeccccccHHHH--HHHHHHHhhhCcc----eeeehhhcCc
Confidence 566667666 4433333222 2333333 457999999999996554 5699999854443 3578765555
No 212
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=22.93 E-value=1.7e+02 Score=27.43 Aligned_cols=52 Identities=19% Similarity=0.190 Sum_probs=34.6
Q ss_pred HHHHHhcCCCCeEEEEEecCCCCCchhchHHH----HHHHhcCCCCCceeeecCCCCCCC
Q 004370 4 AMISKYVERSDAVLLVIIPATQTPDVSSYRAL----RIAKEHDADSTRTVGIISKMDQAE 59 (758)
Q Consensus 4 ~mV~~YI~~~ntIILaVvpAn~~vDlans~aL----klArevDP~G~RTIGVlTK~Dlmd 59 (758)
.+...|+.+-+.+||++-+.+ ..+-+.+ ......-..+.-.|.|.||.|+..
T Consensus 64 ~~~~~~~~~~d~~ilv~d~~~----~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~ 119 (164)
T smart00175 64 SITSSYYRGAVGALLVYDITN----RESFENLKNWLKELREYADPNVVIMLVGNKSDLED 119 (164)
T ss_pred HHHHHHhCCCCEEEEEEECCC----HHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhccc
Confidence 577889999998888876543 3333332 222222224688999999999876
No 213
>PF13256 DUF4047: Domain of unknown function (DUF4047)
Probab=22.80 E-value=3.5e+02 Score=26.08 Aligned_cols=64 Identities=20% Similarity=0.246 Sum_probs=42.1
Q ss_pred chhHHHHHHHHHHHH--HHHHHHHhhhhhcc-HHHHHHhhhcCHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004370 599 VPKAVVLCQVEKAKE--DMLNQLYSSISAQS-TERIGELLQEDKNAKSRRELCQKQSTLLSKLIRQLG 663 (758)
Q Consensus 599 VPKai~h~~V~~~k~--~Ll~~LY~~~~~~~-~~~~~~Ll~E~~~~~~rR~~~~~~~~~l~~~~~~l~ 663 (758)
.||+| |.|+.+|+. +..-+-|..+.+.- ...++.|=+-.-...+.|+++....++|++++.-|.
T Consensus 25 FPkTI-~~L~e~A~qh~~~Il~eye~mk~~~~~~Sie~leq~~~~w~~~rEki~~e~eaLQ~IY~eie 91 (125)
T PF13256_consen 25 FPKTI-DTLKEQAEQHKEQILHEYEGMKKKVKVTSIEELEQAIVEWKQGREKIVAEREALQNIYTEIE 91 (125)
T ss_pred cHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48987 788999985 66666676654321 112333434445567778888888888888777664
No 214
>PF05823 Gp-FAR-1: Nematode fatty acid retinoid binding protein (Gp-FAR-1); InterPro: IPR008632 Parasitic nematodes produce at least two structurally novel classes of small helix-rich retinol- and fatty-acid-binding proteins that have no counterparts in their plant or animal hosts and thus represent potential targets for new nematicides. Gp-FAR-1 is a member of the nematode-specific fatty-acid- and retinol-binding (FAR) family of proteins but localises to the surface of the organism, placing it in a strategic position for interaction with the host. Gp-FAR-1 functions as a broad-spectrum retinol- and fatty-acid-binding protein, and it is thought that it is involved in the evasion of primary host plant defence systems [].; GO: 0008289 lipid binding; PDB: 2W9Y_A.
Probab=22.57 E-value=2.9e+02 Score=27.43 Aligned_cols=59 Identities=17% Similarity=0.233 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 004370 144 QIRNRMSLRVPKLLSGLQGKSQIVQDELLKLGDQILENTEGTKALALQLCREFEDKFLQHITGGEG 209 (758)
Q Consensus 144 ~L~~hI~~~LP~l~~~I~~~l~~~e~eL~~LG~~~~~~~e~~~~~ll~li~~F~~~f~~~I~G~~~ 209 (758)
-+.+-++...|.|-..+..........++.|+ ++ .+.|+-+++..+...+.+.+.|...
T Consensus 44 e~i~~LK~ksP~L~~k~~~l~~~~k~ki~~L~------pe-ak~Fv~~li~~~~~l~~~~~~G~~~ 102 (154)
T PF05823_consen 44 EMIAALKEKSPSLYEKAEKLRDKLKKKIDKLS------PE-AKAFVKELIAKARSLYAQYSAGEKP 102 (154)
T ss_dssp THHHHHHHH-HHHHHHHHHHHHHHHHTTTT--------HH-HHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHHHcCC------HH-HHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 45678899999999999999999999999995 33 4788899999998899888888754
No 215
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=22.54 E-value=75 Score=39.52 Aligned_cols=53 Identities=15% Similarity=0.272 Sum_probs=36.4
Q ss_pred cHHHHHHhcC--CCCeEEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCCc
Q 004370 2 DDAMISKYVE--RSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 2 ~~~mV~~YI~--~~ntIILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd~ 60 (758)
||.+...|+. +++.| +.|+.|+ ++.. .+.+..++...|..+|-|+||+|+.++
T Consensus 73 ~E~i~~~~l~~~~aD~v-I~VvDat---~ler--~l~l~~ql~e~giPvIvVlNK~Dl~~~ 127 (772)
T PRK09554 73 DEQIACHYILSGDADLL-INVVDAS---NLER--NLYLTLQLLELGIPCIVALNMLDIAEK 127 (772)
T ss_pred HHHHHHHHHhccCCCEE-EEEecCC---cchh--hHHHHHHHHHcCCCEEEEEEchhhhhc
Confidence 4566777865 66655 4556666 4433 345556666678999999999999853
No 216
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=22.31 E-value=1.3e+02 Score=29.67 Aligned_cols=55 Identities=5% Similarity=0.131 Sum_probs=34.4
Q ss_pred HHHHHHhcCCCCeEEEEEecCCCCCc-hhch--HHHHHHHhcCCCCCceeeecCCCCCCC
Q 004370 3 DAMISKYVERSDAVLLVIIPATQTPD-VSSY--RALRIAKEHDADSTRTVGIISKMDQAE 59 (758)
Q Consensus 3 ~~mV~~YI~~~ntIILaVvpAn~~vD-lans--~aLklArevDP~G~RTIGVlTK~Dlmd 59 (758)
+.+...|+.+-++||++|-..+. + ++.. ...++.+...-.+...|-|+||.|+..
T Consensus 75 ~~~~~~~~~~ad~ii~vvD~~~~--~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~ 132 (184)
T smart00178 75 RRLWKDYFPEVNGIVYLVDAYDK--ERFAESKRELDALLSDEELATVPFLILGNKIDAPY 132 (184)
T ss_pred HHHHHHHhCCCCEEEEEEECCcH--HHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC
Confidence 35677899999988888755442 2 2222 112233222235678999999999864
No 217
>PRK00093 GTP-binding protein Der; Reviewed
Probab=22.24 E-value=1.5e+02 Score=33.72 Aligned_cols=51 Identities=14% Similarity=0.238 Sum_probs=33.4
Q ss_pred HHHHhcCCCCeEEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCC
Q 004370 5 MISKYVERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAE 59 (758)
Q Consensus 5 mV~~YI~~~ntIILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd 59 (758)
.+..|+...+.||++|-+-+. .........++.++. |...|-|+||+|+.+
T Consensus 73 ~~~~~~~~ad~il~vvd~~~~-~~~~~~~~~~~l~~~---~~piilv~NK~D~~~ 123 (435)
T PRK00093 73 QAELAIEEADVILFVVDGRAG-LTPADEEIAKILRKS---NKPVILVVNKVDGPD 123 (435)
T ss_pred HHHHHHHhCCEEEEEEECCCC-CCHHHHHHHHHHHHc---CCcEEEEEECccCcc
Confidence 456788888877777655432 122223344555554 789999999999765
No 218
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=21.98 E-value=1.4e+02 Score=33.44 Aligned_cols=48 Identities=19% Similarity=0.273 Sum_probs=30.0
Q ss_pred hcCCCCeEEEEEecCCCCCchhchHH----HHHHHhcCCCCCceeeecCCCCCCCc
Q 004370 9 YVERSDAVLLVIIPATQTPDVSSYRA----LRIAKEHDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 9 YI~~~ntIILaVvpAn~~vDlans~a----LklArevDP~G~RTIGVlTK~Dlmd~ 60 (758)
++.+-+.|| .|+.++ |....+- ..+.+++.-.+...|-|++|+|+.+.
T Consensus 265 ~~~~ADlil-~VvD~s---~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~ 316 (351)
T TIGR03156 265 EVREADLLL-HVVDAS---DPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDE 316 (351)
T ss_pred HHHhCCEEE-EEEECC---CCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCCh
Confidence 366677554 455555 2222222 35566665556789999999999863
No 219
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=21.96 E-value=1.7e+02 Score=28.66 Aligned_cols=53 Identities=15% Similarity=0.218 Sum_probs=35.0
Q ss_pred HHHHHHhcCCCCeEEEEEecCCCCCchhchHHHH-----HHHhcCCCCCceeeecCCCCCCC
Q 004370 3 DAMISKYVERSDAVLLVIIPATQTPDVSSYRALR-----IAKEHDADSTRTVGIISKMDQAE 59 (758)
Q Consensus 3 ~~mV~~YI~~~ntIILaVvpAn~~vDlans~aLk-----lArevDP~G~RTIGVlTK~Dlmd 59 (758)
+.|...|+..-+++||++...+ ..+-+.++ +.+.....+...|-|.||.|+.+
T Consensus 64 ~~l~~~~~~~~d~~ilv~d~~~----~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~ 121 (172)
T cd04141 64 TAMRDQYMRCGEGFIICYSVTD----RHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLES 121 (172)
T ss_pred HHHhHHHhhcCCEEEEEEECCc----hhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhh
Confidence 3577889999999998876644 22222222 22322345678899999999864
No 220
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=21.62 E-value=1.8e+02 Score=28.06 Aligned_cols=56 Identities=14% Similarity=0.205 Sum_probs=33.9
Q ss_pred HHHHHHhcCCCCeEEEEEecCCCCCc-hhch--HHHHHHHhcCCCCCceeeecCCCCCCCc
Q 004370 3 DAMISKYVERSDAVLLVIIPATQTPD-VSSY--RALRIAKEHDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 3 ~~mV~~YI~~~ntIILaVvpAn~~vD-lans--~aLklArevDP~G~RTIGVlTK~Dlmd~ 60 (758)
+.|...|+...++||+++-..+. + +.+. ....+.+.....+...|-|+||.|+.+.
T Consensus 72 ~~~~~~~~~~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 130 (173)
T cd04154 72 RPYWRNYFESTDALIWVVDSSDR--LRLDDCKRELKELLQEERLAGATLLILANKQDLPGA 130 (173)
T ss_pred HHHHHHHhCCCCEEEEEEECCCH--HHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccC
Confidence 35778899999988887654332 1 1111 1111222222346789999999999764
No 221
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=21.60 E-value=1.5e+02 Score=27.84 Aligned_cols=52 Identities=15% Similarity=0.256 Sum_probs=33.1
Q ss_pred HHHHHhcCCCCeEEEEEecCCCCCchhchHH----HH-HHHhcCCCCCceeeecCCCCCCC
Q 004370 4 AMISKYVERSDAVLLVIIPATQTPDVSSYRA----LR-IAKEHDADSTRTVGIISKMDQAE 59 (758)
Q Consensus 4 ~mV~~YI~~~ntIILaVvpAn~~vDlans~a----Lk-lArevDP~G~RTIGVlTK~Dlmd 59 (758)
.+...|++.-+++|+++...+ ..+-+. +. +.+..+..+...+-|.||.|+..
T Consensus 64 ~~~~~~~~~~d~~i~v~d~~~----~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~ 120 (161)
T cd01863 64 TLTSSYYRGAQGVILVYDVTR----RDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKEN 120 (161)
T ss_pred hhhHHHhCCCCEEEEEEECCC----HHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccc
Confidence 456778888888777766433 322222 11 22334566777899999999984
No 222
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=21.25 E-value=1.4e+02 Score=28.39 Aligned_cols=55 Identities=13% Similarity=0.253 Sum_probs=33.8
Q ss_pred HHHHHhcCCCCeEEEEEecCCCCCc-hh--chHHHHHHHhcCCCCCceeeecCCCCCCCc
Q 004370 4 AMISKYVERSDAVLLVIIPATQTPD-VS--SYRALRIAKEHDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 4 ~mV~~YI~~~ntIILaVvpAn~~vD-la--ns~aLklArevDP~G~RTIGVlTK~Dlmd~ 60 (758)
.|...|+...+++|++|-+.+. + +. ......+.+.....+...|-|+||+|+.+.
T Consensus 65 ~~~~~~~~~~~~~v~vvd~~~~--~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~ 122 (167)
T cd04160 65 SLWDKYYAECHAIIYVIDSTDR--ERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA 122 (167)
T ss_pred HHHHHHhCCCCEEEEEEECchH--HHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC
Confidence 4677899999988887654331 1 11 111122223233457889999999998764
No 223
>PF10035 DUF2179: Uncharacterized protein conserved in bacteria (DUF2179); InterPro: IPR019264 This entry, found mostly in hypothetical bacterial proteins, has no known function. ; PDB: 3HLU_B.
Probab=21.20 E-value=1e+02 Score=24.72 Aligned_cols=31 Identities=23% Similarity=0.338 Sum_probs=22.5
Q ss_pred hcCCCCeEEEEEecCCCCCchhchHHHHHHHhcCCC
Q 004370 9 YVERSDAVLLVIIPATQTPDVSSYRALRIAKEHDAD 44 (758)
Q Consensus 9 YI~~~ntIILaVvpAn~~vDlans~aLklArevDP~ 44 (758)
|-..+..+|++|++-. .-....++.+++||+
T Consensus 12 ys~~~~~~l~~v~~r~-----e~~~l~~~I~~~Dp~ 42 (55)
T PF10035_consen 12 YSGEEKTVLYTVVSRR-----ELPKLKKIIKEIDPK 42 (55)
T ss_dssp SSSS--EEEEEEEECC-----HHHHHHHHHHCC-TT
T ss_pred ecCCCeEEEEEEEeHH-----HHHHHHHHHHHhCCC
Confidence 5567888999998855 346789999999997
No 224
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=20.79 E-value=1.8e+02 Score=28.90 Aligned_cols=53 Identities=21% Similarity=0.291 Sum_probs=30.2
Q ss_pred HHHHHhcC---CCCeEEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCCc
Q 004370 4 AMISKYVE---RSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 4 ~mV~~YI~---~~ntIILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd~ 60 (758)
+|+..|+. ..+++|++ +.+.......+.+.+.+++.. |...|.|+||.|+++.
T Consensus 80 ~~~~~~~~~~~~~d~vi~V-vD~~~~~~~~~~~~~~~~~~~---~~~~iiv~NK~Dl~~~ 135 (192)
T cd01889 80 SLIRTIIGGAQIIDLMLLV-VDATKGIQTQTAECLVIGEIL---CKKLIVVLNKIDLIPE 135 (192)
T ss_pred HHHHHHHHHHhhCCEEEEE-EECCCCccHHHHHHHHHHHHc---CCCEEEEEECcccCCH
Confidence 34555543 34566665 445421112233445555554 5678899999999853
No 225
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=20.64 E-value=1.9e+02 Score=27.17 Aligned_cols=55 Identities=18% Similarity=0.231 Sum_probs=32.9
Q ss_pred HHHHHhcCCCCeEEEEEecCCCCCchhchHH-HHHHHh-cCCCCCceeeecCCCCCCC
Q 004370 4 AMISKYVERSDAVLLVIIPATQTPDVSSYRA-LRIAKE-HDADSTRTVGIISKMDQAE 59 (758)
Q Consensus 4 ~mV~~YI~~~ntIILaVvpAn~~vDlans~a-LklAre-vDP~G~RTIGVlTK~Dlmd 59 (758)
.|...|+..-+++||++...+. .-+.+... +....+ ....+.-.|-|.||.|+.+
T Consensus 64 ~~~~~~~~~~~~~ilv~d~~~~-~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 120 (163)
T cd04136 64 AMRDLYIKNGQGFVLVYSITSQ-SSFNDLQDLREQILRVKDTENVPMVLVGNKCDLED 120 (163)
T ss_pred hHHHHHhhcCCEEEEEEECCCH-HHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 4677899999988888765432 01111111 122222 2345667888999999975
No 226
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=20.43 E-value=2.9e+02 Score=25.79 Aligned_cols=54 Identities=19% Similarity=0.222 Sum_probs=34.7
Q ss_pred HHHHHhcCCCCeEEEEEecCCCCCc-h--hchHHHHHHHhcCCCCCceeeecCCCCCCC
Q 004370 4 AMISKYVERSDAVLLVIIPATQTPD-V--SSYRALRIAKEHDADSTRTVGIISKMDQAE 59 (758)
Q Consensus 4 ~mV~~YI~~~ntIILaVvpAn~~vD-l--ans~aLklArevDP~G~RTIGVlTK~Dlmd 59 (758)
.+...|++.-+++|+++...+. + + ...-...+.+..++....-|-|+||.|+.+
T Consensus 63 ~~~~~~~~~~~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~ 119 (164)
T cd04139 63 AIRDNYHRSGEGFLLVFSITDM--ESFTATAEFREQILRVKDDDNVPLLLVGNKCDLED 119 (164)
T ss_pred HHHHHHhhcCCEEEEEEECCCH--HHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccc
Confidence 4667788999998888754321 1 0 111222333333456788999999999987
No 227
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=20.38 E-value=1.9e+02 Score=29.31 Aligned_cols=49 Identities=16% Similarity=0.186 Sum_probs=27.7
Q ss_pred cCCCCeEEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCCc
Q 004370 10 VERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 10 I~~~ntIILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd~ 60 (758)
+..-+.+||+|.+..-.+...+-+.+..++... ....|-|+||.|+.+.
T Consensus 104 ~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~--~~~iiivvNK~Dl~~~ 152 (203)
T cd01888 104 AAVMDGALLLIAANEPCPQPQTSEHLAALEIMG--LKHIIIVQNKIDLVKE 152 (203)
T ss_pred hhcCCEEEEEEECCCCCCCcchHHHHHHHHHcC--CCcEEEEEEchhccCH
Confidence 444466666655433101223345566665442 2357889999999864
No 228
>COG1161 Predicted GTPases [General function prediction only]
Probab=20.36 E-value=1.2e+02 Score=33.58 Aligned_cols=65 Identities=12% Similarity=0.188 Sum_probs=52.1
Q ss_pred HHHHHhcCCCCeEEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCCcchhHHHHHHHHHcCCC
Q 004370 4 AMISKYVERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAEGDSKALAAVRALLLNQG 76 (758)
Q Consensus 4 ~mV~~YI~~~ntIILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd~gt~~~~~~~~iL~nk~ 76 (758)
..+.+++...+ +|+-|+.|- |+..+..-.+.+-+-.... |=|+.|.||++... ...|...+..+.
T Consensus 26 ~~~~~~~~~~d-~vvevvDar---~P~~s~~~~l~~~v~~k~~--i~vlNK~DL~~~~~--~~~W~~~~~~~~ 90 (322)
T COG1161 26 RQLKEVLKSVD-VVVEVVDAR---DPLGTRNPELERIVKEKPK--LLVLNKADLAPKEV--TKKWKKYFKKEE 90 (322)
T ss_pred HHHHHhcccCC-EEEEEEecc---ccccccCccHHHHHccCCc--EEEEehhhcCCHHH--HHHHHHHHHhcC
Confidence 46778887777 777888888 8998988888888877655 99999999999655 456888887664
No 229
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=20.08 E-value=1.5e+02 Score=29.14 Aligned_cols=53 Identities=21% Similarity=0.186 Sum_probs=33.3
Q ss_pred HHHHHHhcCCCCeEEEEEecCCCCCchhchH----HHHHHHhcCCCCCceeeecCCCCCCCc
Q 004370 3 DAMISKYVERSDAVLLVIIPATQTPDVSSYR----ALRIAKEHDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 3 ~~mV~~YI~~~ntIILaVvpAn~~vDlans~----aLklArevDP~G~RTIGVlTK~Dlmd~ 60 (758)
+.|...|+.+-+++||++. .+ |..+-+ -+...+...+ +...|-|.||.|+.+.
T Consensus 64 ~~~~~~~~~~~d~iilv~d-~~---~~~s~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~ 120 (193)
T cd04118 64 EAMSRIYYRGAKAAIVCYD-LT---DSSSFERAKFWVKELQNLEE-HCKIYLCGTKSDLIEQ 120 (193)
T ss_pred hhhhHhhcCCCCEEEEEEE-CC---CHHHHHHHHHHHHHHHhcCC-CCCEEEEEEccccccc
Confidence 3466778888887777664 34 333222 2334444444 5778999999999753
No 230
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=20.08 E-value=2e+02 Score=28.25 Aligned_cols=52 Identities=17% Similarity=0.187 Sum_probs=33.6
Q ss_pred HHHHHhcCCCCeEEEEEecCCCCCchhchH----HHHHHHhcCCCCCceeeecCCCCCCC
Q 004370 4 AMISKYVERSDAVLLVIIPATQTPDVSSYR----ALRIAKEHDADSTRTVGIISKMDQAE 59 (758)
Q Consensus 4 ~mV~~YI~~~ntIILaVvpAn~~vDlans~----aLklArevDP~G~RTIGVlTK~Dlmd 59 (758)
.+...|+.+-++|||++-..+. .+-+ -+...+..-+...-.|.|.||.|+.+
T Consensus 64 ~~~~~~~~~~d~iilv~d~~~~----~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~ 119 (188)
T cd04125 64 SLNNSYYRGAHGYLLVYDVTDQ----ESFENLKFWINEINRYARENVIKVIVANKSDLVN 119 (188)
T ss_pred hhHHHHccCCCEEEEEEECcCH----HHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcc
Confidence 4677889999988888765432 2111 12234444455566799999999984
No 231
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=20.02 E-value=2.9e+02 Score=28.29 Aligned_cols=49 Identities=16% Similarity=0.218 Sum_probs=28.1
Q ss_pred HhcCCCCeEEEEEecCCCC-------CchhchHHHHHHHhcCCCCCceeeecCCCCCCC
Q 004370 8 KYVERSDAVLLVIIPATQT-------PDVSSYRALRIAKEHDADSTRTVGIISKMDQAE 59 (758)
Q Consensus 8 ~YI~~~ntIILaVvpAn~~-------vDlans~aLklArevDP~G~RTIGVlTK~Dlmd 59 (758)
.++...+++|++ +.|... +...+-..+.+++... ..+.|.|++|+|+..
T Consensus 96 ~~~~~~d~~i~V-vDa~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~iiivvNK~Dl~~ 151 (219)
T cd01883 96 TGASQADVAVLV-VDARKGEFEAGFEKGGQTREHALLARTLG--VKQLIVAVNKMDDVT 151 (219)
T ss_pred HHhhhCCEEEEE-EECCCCccccccccccchHHHHHHHHHcC--CCeEEEEEEcccccc
Confidence 445567766665 555520 1112334445555442 257889999999983
Done!